chr	start	end	name	score	strand	gc	gc_bin	chrom	feature_id	feature_bin	feature_type_top	feature_types	gene_name	gene_id	transcript_ids	gene_type_top	transcript_type_top	gene_types	transcript_types	input_sum	clip_sum	enrichment_n	enrichment_l2or_min	enrichment_l2or_mean	enrichment_l2or_max	p_max	p_min	q_max	q_min
chr16	53872285	53872385	15670180	0	+	0.49	(0.455,0.49]	chr16	1245515	276	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000636218.1:ENST00000637001.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000636030.1:ENST00000464071.1:ENST00000563011.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	7194	2	10.483	11.93955	13.3961	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	128321077	128321177	13148475	0	+	0.33	(0.29,0.33]	chr12	1027585	265	INTRON	INTRON	TMEM132C	ENSG00000181234.10	ENST00000435159.3	protein_coding	protein_coding	protein_coding	protein_coding	0	1520	2	10.1016	10.726199999999999	11.3508	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	58355818	58355918	16288576	0	+	0.55	(0.53,0.59]	chr17	1321146	22	INTRON	INTRON	TSPOAP1-AS1	ENSG00000265148.6	ENST00000583841.1	lncRNA	lncRNA	lncRNA	lncRNA	1	3429	2	10.54	10.65495	10.7699	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	21025615	21025715	9746386	0	-	0.45	(0.42,0.455]	chr8	736888	139	INTRON	INTRON	RP11-369E15.3	ENSG00000254092.2	ENST00000662185.1:ENST00000662848.1:ENST00000657283.1:ENST00000659453.1:ENST00000657734.1:ENST00000656144.1	lncRNA	lncRNA	lncRNA	lncRNA	0	1290	2	9.99093	10.350815	10.7107	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	45474281	45474381	18145522	0	+	0.49	(0.455,0.49]	chr21	1539684	3	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1037	2	9.91833	10.085014999999999	10.2517	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	103873884	103873983	14797073	0	-	0.50505	(0.49,0.53]	chr14	1159798	35	INTRON	INTRON	CTD-2134A5.4	ENSG00000258534.1	ENST00000555967.1	lncRNA	lncRNA	lncRNA	lncRNA	2	3743	2	9.25377	10.067834999999999	10.8819	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	45835985	45836085	18280073	0	-	0.53	(0.49,0.53]	chr21	1550683	3	SS5_PROX	SS5_PROX:INTRON	PCBP3-AS1	ENSG00000205424.2	ENST00000380008.2	lncRNA	lncRNA	lncRNA	lncRNA	0	1159	2	9.27807	10.005585	10.7331	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	26605187	26605285	7102964	0	+	0.285714	[0,0.29]	chr6	543236	26	EXON_LNCRNA	EXON_LNCRNA	RP11-457M11.7	ENSG00000275846.1	ENST00000611708.1:ENST00000616994.1	lncRNA	lncRNA	lncRNA	lncRNA	0	773	2	9.78339	9.987945	10.1925	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	159722781	159722880	6943328	0	-	0.222222	[0,0.29]	chr5	531728	142	INTRON	INTRON	LINC01847	ENSG00000253311.3	ENST00000641163.1:ENST00000523311.3	lncRNA	lncRNA	lncRNA	lncRNA	0	689	2	9.46852	9.78471	10.1009	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	67733400	67733499	14683604	0	-	0.343434	(0.33,0.36]	chr14	1149672	32	INTRON	INTRON	ZFYVE26	ENSG00000072121.17	ENST00000394455.6	protein_coding	retained_intron	protein_coding	retained_intron	0	707	2	9.12641	9.616155	10.1059	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	92608854	92608953	10358222	0	+	0.626263	(0.59,1]	chr9	779574	80	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8:ENST00000375579.7	protein_coding	protein_coding	protein_coding	protein_coding	0	1210	2	8.78436	9.611429999999999	10.4385	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	61270272	61270371	12403605	0	-	0.525253	(0.49,0.53]	chr11	960090	8	INTRON	INTRON	VWCE	ENSG00000167992.13	ENST00000335613.10:ENST00000301770.10:ENST00000613271.4:ENST00000535710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	885	2	8.81533	9.592465	10.3696	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	49578529	49578628	7729574	0	-	0.363636	(0.36,0.39]	chr6	592924	5	INTRON	INTRON	CYP2AC1P	ENSG00000216998.1	ENST00000407830.1	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	0	678	2	9.08002	9.513615	9.94721	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	33934450	33934550	1727050	0	+	0.37	(0.36,0.39]	chr2	169046	71	INTRON	INTRON	LINC01320	ENSG00000228262.10	ENST00000366209.6:ENST00000442026.1:ENST00000671333.1:ENST00000667658.1:ENST00000664138.1:ENST00000661209.1:ENST00000666112.1	lncRNA	lncRNA	lncRNA	lncRNA	0	871	2	8.2916	9.459900000000001	10.6282	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	70817571	70817667	11102392	0	+	0.458333	(0.455,0.49]	chr10	844583	3	INTRON	INTRON	SGPL1	ENSG00000166224.17	ENST00000373202.8:ENST00000486993.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1855	2	7.17105	9.391475	11.6119	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	10014879	10014978	18159223	0	-	0.424242	(0.42,0.455]	chr21	1541944	114	INTRON	INTRON	bP-21201H5.1	ENSG00000270533.2	ENST00000625012.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	22	14343	2	9.24915	9.385760000000001	9.52237	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	79912167	79912267	8355307	0	+	0.39	(0.36,0.39]	chr7	637367	1000	INTRON	INTRON	GNAI1	ENSG00000127955.17	ENST00000650351.1:ENST00000649225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	943	2	7.96196	9.38288	10.8038	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	32484813	32484912	14209657	0	+	0.383838	(0.36,0.39]	chr14	1113273	99	INTRON	INTRON	AKAP6	ENSG00000151320.11	ENST00000280979.9:ENST00000557354.5:ENST00000557272.1:ENST00000553547.5	protein_coding	protein_coding	protein_coding	protein_coding	0	707	2	8.40491	9.326004999999999	10.2471	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	11173740	11173838	12732787	0	+	0.346939	(0.33,0.36]	chr12	989994	23	UTR3	UTR3:EXON_MRNA	SMIM10L1	ENSG00000256537.5	ENST00000622602.2	protein_coding	protein_coding	protein_coding	protein_coding	0	773	2	7.87404	9.21427	10.5545	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62252210	62252310	12407567	0	-	0.51	(0.49,0.53]	chr11	960848	373	INTRON	INTRON	RP11-703H8.9	ENSG00000254404.1	ENST00000529875.1	lncRNA	lncRNA	lncRNA	lncRNA	5	3101	2	7.71748	9.10859	10.4997	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	17082470	17082570	17251254	0	+	0.58	(0.53,0.59]	chr19	1423640	62	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5	protein_coding	protein_coding	protein_coding	protein_coding	0	580	2	8.8971	9.07878	9.26046	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	15201916	15202016	4051167	0	-	0.4	(0.39,0.42]	chr3	340328	211	INTRON	INTRON	COL6A4P1	ENSG00000230524.8	ENST00000446690.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	498	2	8.45175	8.97418	9.49661	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	17213898	17213998	76409	0	+	0.6	(0.59,1]	chr1	8870	82	INTRON	INTRON	PADI1	ENSG00000142623.11	ENST00000375471.5	protein_coding	protein_coding	protein_coding	protein_coding	0	651	2	8.68887	8.919875000000001	9.15088	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	19747722	19747822	10954409	0	+	0.47	(0.455,0.49]	chr10	833877	134	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000480707.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	580	2	7.85545	8.882345	9.90924	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	630930	631030	823338	0	-	0.42	(0.39,0.42]	chr1	81476	4	SS5_PROX	SS5_PROX:INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	35	14414	2	8.62349	8.860949999999999	9.09841	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	71831188	71831251	11563372	0	-	0.492063	(0.49,0.53]	chr10	880015	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	2	1507	2	8.1993	8.840115	9.48093	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	73588841	73588940	14701810	0	-	0.343434	(0.33,0.36]	chr14	1151231	173	INTRON	INTRON	RP3-414A15.10	ENSG00000258603.4	ENST00000664243.1	lncRNA	lncRNA	lncRNA	lncRNA	1	594	2	8.47655	8.817129999999999	9.15771	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	7926885	7926985	18943047	0	-	0.56	(0.53,0.59]	chrX	1613781	2	SS5_PROX	SS5_PROX:INTRON	PNPLA4	ENSG00000006757.12	ENST00000381042.9:ENST00000537427.5:ENST00000444736.5:ENST00000442940.1	protein_coding	protein_coding	protein_coding	protein_coding	2	1690	2	8.05515	8.795694999999998	9.53624	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	57387753	57387809	12394220	0	-	0.714286	(0.59,1]	chr11	958603	1	CDS	CDS:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	667	2	7.90211	8.735	9.56789	3.54546e-11	1e-12	5.39916e-9	2.46312e-10
chr6	158766913	158767013	8043903	0	-	0.6	(0.59,1]	chr6	614904	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	9	3213	2	6.94922	8.73071	10.5122	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	45474481	45474579	18145524	0	+	0.510204	(0.49,0.53]	chr21	1539685	1	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	419	2	8.55687	8.715835	8.8748	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	20140845	20140945	8714884	0	-	0.46	(0.455,0.49]	chr7	665363	63	UTR3	UTR3:EXON_MRNA	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000589011.1	protein_coding	protein_coding	protein_coding	protein_coding	1	723	2	7.17097	8.646785	10.1226	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	77196325	77196425	15389487	0	-	0.37	(0.36,0.39]	chr15	1216714	139	INTRON	INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5:ENST00000558305.5:ENST00000564328.5:ENST00000565820.5:ENST00000567808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	570	2	7.12154	8.60627	10.091	1.31772e-12	1e-12	3.14916e-10	2.25522e-10
chr10	42997621	42997681	11018735	0	+	0.6	(0.59,1]	chr10	838269	2	EXON_SMALL	EXON_SMALL:PRIMIRNA	MIR5100	ENSG00000263795.1	ENST00000579544.1	miRNA	miRNA	miRNA	miRNA:primary_miRNA	2	1790	2	6.075	8.59835	11.1217	2.46381e-12	1e-12	5.45852e-10	2.25522e-10
chrX	315974	316062	18924688	0	-	0.477273	(0.455,0.49]	chrX	1612796	3	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	370	2	8.39832	8.59764	8.79696	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	17553152	17553252	4063082	0	-	0.43	(0.42,0.455]	chr3	341282	57	INTRON	INTRON	TBC1D5	ENSG00000131374.14	ENST00000253692.11:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	852	2	6.65632	8.58181	10.5073	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	134924022	134924122	6232557	0	+	0.39	(0.36,0.39]	chr5	485525	132	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	6607	2	8.00048	8.57504	9.1496	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	316237	316325	18924691	0	-	0.5	(0.49,0.53]	chrX	1612796	6	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	367	2	8.36849	8.530185	8.69188	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	85400637	85400737	15795324	0	+	0.44	(0.42,0.455]	chr16	1256986	413	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	388	2	7.70983	8.5124	9.31497	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	94569470	94569569	6710404	0	-	0.424242	(0.42,0.455]	chr5	516594	1	INTRON	INTRON	KIAA0825	ENSG00000185261.15	ENST00000682413.1:ENST00000513200.7:ENST00000329378.7	protein_coding	protein_coding	protein_coding	protein_coding	18	6168	2	7.61824	8.475670000000001	9.3331	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	80432240	80432340	12986558	0	+	0.44	(0.42,0.455]	chr12	1011603	43	INTRON	INTRON	PTPRQ	ENSG00000139304.16	ENST00000551042.5:ENST00000547376.5:ENST00000551573.5	protein_coding	protein_coding	protein_coding	protein_coding	0	450	2	7.38109	8.470040000000001	9.55899	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	24889233	24889333	11418001	0	-	0.57	(0.53,0.59]	chr10	870301	168	INTRON	INTRON	PRTFDC1	ENSG00000099256.19	ENST00000320152.11:ENST00000376378.5	protein_coding	protein_coding	protein_coding	protein_coding	1	676	2	7.84956	8.46911	9.08866	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62629885	62629957	12409752	0	-	0.513889	(0.49,0.53]	chr11	961265	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	351	2	8.25153	8.45476	8.65799	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	39116008	39116108	14242977	0	+	0.46	(0.455,0.49]	chr14	1114622	7	INTRON	INTRON	GEMIN2	ENSG00000092208.19	ENST00000525153.6:ENST00000250379.13:ENST00000412033.7:ENST00000396249.7:ENST00000650481.1:ENST00000531684.6:ENST00000308317.12:ENST00000534684.7:ENST00000525430.1:ENST00000527381.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	360	2	7.92166	8.451755	8.98185	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	8886441	8886509	17452020	0	-	0.558824	(0.53,0.59]	chr19	1459221	1	CDS	CDS:EXON_MRNA	MUC16	ENSG00000181143.15	ENST00000397910.8:ENST00000601404.5:ENST00000599436.1:ENST00000596768.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	395	2	7.93934	8.44853	8.95772	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	78370130	78370230	13796833	0	+	0.35	(0.33,0.36]	chr13	1085419	60	INTRON	INTRON	OBI1-AS1	ENSG00000234377.7	ENST00000607862.5:ENST00000605996.5:ENST00000606429.5:ENST00000606124.5:ENST00000607205.5:ENST00000607860.5:ENST00000607220.5:ENST00000560209.6:ENST00000606376.5:ENST00000430549.6:ENST00000444769.7:ENST00000606803.1	lncRNA	lncRNA	lncRNA	lncRNA	0	289	2	8.27053	8.43457	8.59861	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	143990229	143990326	3794149	0	+	0.319588	(0.29,0.33]	chr3	324065	5	UTR3	UTR3:EXON_MRNA:INTRON	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000495414.5:ENST00000441925.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	605	2	7.68165	8.41736	9.15307	1e-12	1e-12	2.46312e-10	2.25522e-10
chrY	12622887	12622987	19312507	0	+	0.38	(0.36,0.39]	chrY	1641410	763	INTRON	INTRON	USP9Y	ENSG00000114374.13	ENST00000457658.6	protein_coding	processed_transcript	protein_coding	processed_transcript	0	361	2	7.59257	8.416644999999999	9.24072	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	94447091	94447179	7849312	0	-	0.397727	(0.39,0.42]	chr6	601304	5	EXON_PSEUDO	EXON_PSEUDO	MTCYBP36	ENSG00000216853.1	ENST00000404146.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	33	12921	2	7.67524	8.376255	9.07727	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	21333448	21333548	13926218	0	-	0.36	(0.33,0.36]	chr13	1092547	24	INTRON	INTRON	LINC00539	ENSG00000224429.8	ENST00000661173.1:ENST00000659153.1:ENST00000664989.1:ENST00000655569.1:ENST00000434601.7:ENST00000608957.5:ENST00000664392.1:ENST00000423575.5:ENST00000411525.1:ENST00000659380.1	lncRNA	lncRNA	lncRNA	lncRNA	1	496	2	8.05992	8.37055	8.68118	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	58161507	58161605	15965640	0	-	0.459184	(0.455,0.49]	chr16	1280935	21	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	684	2	7.53005	8.35318	9.17631	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	315599	315699	18924684	0	-	0.5	(0.49,0.53]	chrX	1612795	3	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	4	1473	2	8.02182	8.331485	8.64115	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62626859	62626934	12409713	0	-	0.493333	(0.49,0.53]	chr11	961241	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000531563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	335	2	7.88893	8.331335	8.77374	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	112917369	112917466	1232351	0	-	0.443299	(0.42,0.455]	chr1	120462	3	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	707	2	7.51701	8.32704	9.13707	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	42428236	42428336	18523543	0	-	0.63	(0.59,1]	chr22	1581779	161	INTRON	INTRON	NFAM1	ENSG00000235568.7	ENST00000329021.10:ENST00000355469.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	503	2	7.42554	8.31467	9.2038	2.71796e-9	1e-12	2.73726e-7	2.25522e-10
chrX	47586520	47586591	18687924	0	+	0.535211	(0.53,0.59]	chrX	1593571	1	CDS	CDS:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000218388.9:ENST00000377017.5:ENST00000445623.1	protein_coding	protein_coding	protein_coding	protein_coding	2	1080	2	8.00888	8.30398	8.59908	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	59720320	59720420	3512906	0	+	0.39	(0.36,0.39]	chr3	307303	1360	INTRON	INTRON	CTD-2185K10.1	ENSG00000243295.2	ENST00000668131.1	lncRNA	lncRNA	lncRNA	lncRNA	0	263	2	8.23143	8.252195	8.27296	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	125606300	125606382	12194386	0	+	0.512195	(0.49,0.53]	chr11	940749	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526213.5:ENST00000527456.1:ENST00000525431.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	304	2	7.95007	8.23333	8.51659	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	49758432	49758483	12869221	0	+	0.588235	(0.53,0.59]	chr12	999627	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000547832.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1:ENST00000547013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	557	2	7.4298400000000004	8.207235	8.98463	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	316062	316149	18924689	0	-	0.494253	(0.49,0.53]	chrX	1612796	4	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	519	2	7.07276	8.205765	9.33877	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	41568048	41568147	17968465	0	-	0.323232	(0.29,0.33]	chr20	1522956	35	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	2813	2	7.10046	8.204284999999999	9.30811	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	54295686	54295786	11500686	0	-	0.47	(0.455,0.49]	chr10	877347	584	INTRON	INTRON	PCDH15	ENSG00000150275.20	ENST00000373965.6:ENST00000644397.2:ENST00000616114.4:ENST00000621708.4:ENST00000495484.5:ENST00000395440.5:ENST00000395442.5:ENST00000617271.4:ENST00000395445.6:ENST00000395446.5:ENST00000409834.5:ENST00000414367.5:ENST00000613657.5:ENST00000320301.11:ENST00000361849.7:ENST00000373956.7:ENST00000373957.7:ENST00000395430.5:ENST00000395433.5:ENST00000437009.5:ENST00000448885.5:ENST00000373955.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	2478	2	6.77755	8.17863	9.57971	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	112921989	112922061	1232398	0	-	0.458333	(0.455,0.49]	chr1	120468	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000481750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	289	2	7.56579	8.15258	8.73937	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	46822399	46822499	18401746	0	+	0.43	(0.42,0.455]	chr22	1567380	244	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	276	2	7.84169	8.145624999999999	8.44956	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	114209574	114209674	10430129	0	+	0.63	(0.59,1]	chr9	785297	1	SS3_ADJ	SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	COL27A1:MIR455	ENSG00000196739.15:ENSG00000207726.3	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6:ENST00000384993.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	2	1494	2	5.31603	8.133465000000001	10.9509	9.50266e-10	1e-12	1.09358e-7	2.25522e-10
chr12	48022634	48022734	12860764	0	+	0.43	(0.42,0.455]	chr12	998431	4	SS3_PROX	SS3_PROX:INTRON	RP1-228P16.4	ENSG00000257985.1	ENST00000546738.1	lncRNA	lncRNA	lncRNA	lncRNA	0	411	2	6.73119	8.12172	9.51225	2.53502e-10	1e-12	3.43829e-8	2.25522e-10
chr11	16975013	16975112	12294614	0	-	0.393939	(0.39,0.42]	chr11	950269	1	INTRON	INTRON	PLEKHA7	ENSG00000166689.16	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	315	2	7.22169	8.121319999999999	9.02095	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	25836912	25837012	904729	0	-	0.45	(0.42,0.455]	chr1	94109	1	SS5_PROX	SS5_PROX:INTRON	AUNIP	ENSG00000127423.11	ENST00000538789.5:ENST00000374298.4:ENST00000481602.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	286	2	7.56293	8.113589999999999	8.66425	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	32023129	32023229	7118160	0	+	0.47	(0.455,0.49]	chr6	546752	56	INTRON	INTRON	C4B	ENSG00000224389.9	ENST00000435363.7:ENST00000425700.3	protein_coding	protein_coding	protein_coding	protein_coding	33	8589	2	6.99433	8.099174999999999	9.20402	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	105712410	105712509	13882671	0	+	0.333333	(0.33,0.36]	chr13	1088222	42	INTRON	INTRON	LINC00343	ENSG00000226620.8	ENST00000599179.2:ENST00000667582.1:ENST00000671026.1:ENST00000596398.6:ENST00000656290.1:ENST00000601607.6:ENST00000663594.1:ENST00000667429.1:ENST00000653178.1:ENST00000660821.1:ENST00000598478.2:ENST00000454555.2:ENST00000667492.1:ENST00000669807.1:ENST00000655625.1:ENST00000671060.1:ENST00000653504.1:ENST00000659258.1:ENST00000656920.1:ENST00000670771.1:ENST00000655201.1:ENST00000670433.1:ENST00000668581.1:ENST00000668362.1:ENST00000667217.1:ENST00000608426.2:ENST00000663744.1:ENST00000660976.1:ENST00000658308.1:ENST00000661872.1:ENST00000663287.1:ENST00000655741.1:ENST00000665747.1:ENST00000669706.1:ENST00000656267.1:ENST00000670308.1:ENST00000660236.1:ENST00000659016.1:ENST00000665309.1:ENST00000670977.1:ENST00000661301.1:ENST00000660560.1:ENST00000660294.1:ENST00000659909.1:ENST00000662500.1:ENST00000663045.1:ENST00000667987.1:ENST00000668272.1:ENST00000666696.1:ENST00000658024.1:ENST00000670430.1:ENST00000666948.1:ENST00000663761.1:ENST00000670555.1:ENST00000661817.1:ENST00000669887.1:ENST00000667685.1:ENST00000667106.1:ENST00000664201.1:ENST00000669675.1:ENST00000655062.1:ENST00000658095.1:ENST00000658711.1:ENST00000654132.1:ENST00000658692.1:ENST00000661079.1:ENST00000671053.1:ENST00000666322.1:ENST00000656646.1:ENST00000669035.1:ENST00000663194.1:ENST00000669655.1:ENST00000664695.1:ENST00000659496.1:ENST00000658169.1:ENST00000664522.1:ENST00000669540.1:ENST00000655448.1:ENST00000671561.1:ENST00000663969.1:ENST00000668396.1:ENST00000656539.1:ENST00000657599.1:ENST00000599264.2:ENST00000668939.1:ENST00000653600.1:ENST00000670303.1:ENST00000670821.1:ENST00000670530.1:ENST00000656615.1:ENST00000670114.1:ENST00000664140.1:ENST00000669886.1:ENST00000654919.1:ENST00000655173.1:ENST00000666040.1:ENST00000669959.1:ENST00000661976.1:ENST00000669507.1:ENST00000659165.1:ENST00000654352.1:ENST00000669144.1:ENST00000654086.1:ENST00000654904.1:ENST00000671516.1:ENST00000661782.1:ENST00000670546.1:ENST00000669264.1:ENST00000664090.1:ENST00000668080.1:ENST00000664796.1:ENST00000656479.1:ENST00000671402.1:ENST00000669497.1:ENST00000668279.1:ENST00000653082.1:ENST00000657690.1:ENST00000415294.3:ENST00000655206.1:ENST00000657324.1:ENST00000669840.1:ENST00000670429.1:ENST00000658151.1:ENST00000667534.1:ENST00000668966.1	lncRNA	lncRNA	lncRNA	lncRNA	0	228	2	7.83984	8.07579	8.31174	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	49759270	49759321	12869232	0	+	0.352941	(0.33,0.36]	chr12	999632	2	CDS	CDS:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000547013.1:ENST00000550040.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	564	2	7.68754	8.04053	8.39352	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	149005896	149005976	9124757	0	-	0.5375	(0.53,0.59]	chr7	696964	1	CDS	CDS:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000466592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	316	2	7.29533	8.03389	8.77245	1.31833e-11	1e-12	2.43685e-9	2.25522e-10
chr2	228913020	228913120	3215259	0	-	0.39	(0.36,0.39]	chr2	283130	620	INTRON	INTRON	PID1	ENSG00000153823.19	ENST00000482518.6	protein_coding	processed_transcript	protein_coding	processed_transcript	1	379	2	7.0678	8.030995	8.99419	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	20154098	20154198	17506367	0	-	0.46	(0.455,0.49]	chr19	1469470	23	INTRON	INTRON	CTC-260E6.6	ENSG00000267383.7	ENST00000593655.5:ENST00000586657.1	lncRNA	lncRNA	lncRNA	lncRNA	1	504	2	6.41031	8.02475	9.63919	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	75503986	75504083	16037949	0	-	0.525773	(0.49,0.53]	chr16	1288128	10	INTRON	INTRON	TMEM231P1	ENSG00000262583.1	ENST00000575421.1	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	267	2	7.59938	8.013645	8.42791	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	28099606	28099706	7650552	0	-	0.42	(0.39,0.42]	chr6	582882	186	INTRON	INTRON	ZSCAN16-AS1	ENSG00000269293.3	ENST00000660873.1	lncRNA	lncRNA	lncRNA	lncRNA	0	246	2	7.56919	7.9961400000000005	8.42309	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	38709616	38709714	144545	0	+	0.44898	(0.42,0.455]	chr1	18021	8	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	502	2	7.9238	7.9834249999999995	8.04305	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	31990391	31990491	7117851	0	+	0.47	(0.455,0.49]	chr6	546576	56	INTRON	INTRON	C4A	ENSG00000244731.8	ENST00000428956.7:ENST00000498271.1	protein_coding	protein_coding	protein_coding	protein_coding	35	8369	2	6.76453	7.980805	9.19708	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	93669909	93669993	8929518	0	-	0.416667	(0.39,0.42]	chr7	681407	2	EXON_PSEUDO	EXON_PSEUDO	AC002075.4	ENSG00000237729.2	ENST00000425207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	644	2	7.81948	7.976815	8.13415	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	52331885	52331985	17619675	0	-	0.54	(0.53,0.59]	chr19	1486755	11	INTRON	INTRON	CTD-2525I3.6	ENSG00000269535.1	ENST00000594379.1	lncRNA	lncRNA	lncRNA	lncRNA	5	1840	2	7.58574	7.971405000000001	8.35707	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	101213106	101213204	8953711	0	-	0.520408	(0.49,0.53]	chr7	684697	1	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000478264.1:ENST00000424135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	248	2	7.81568	7.967515000000001	8.11935	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	136042844	136042944	10888102	0	-	0.47	(0.455,0.49]	chr9	826903	235	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	7.23804	7.95488	8.67172	5.82945e-12	1e-12	1.07608e-9	2.46312e-10
chr15	58402181	58402281	15309617	0	-	0.54	(0.53,0.59]	chr15	1208244	707	INTRON	INTRON	ALDH1A2	ENSG00000128918.15	ENST00000558239.5:ENST00000560863.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	1875	2	7.86008	7.919205	7.97833	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	44351549	44351631	16234925	0	+	0.597561	(0.59,1]	chr17	1314579	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000589923.1:ENST00000585348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	338	2	7.43796	7.9190450000000006	8.40013	2.48868e-9	1e-12	2.53076e-7	2.25522e-10
chr21	24411832	24411932	18076168	0	+	0.39	(0.36,0.39]	chr21	1532805	702	INTRON	INTRON	LINC01684	ENSG00000237484.6	ENST00000656088.1	lncRNA	lncRNA	lncRNA	lncRNA	0	218	2	7.59257	7.91784	8.24311	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	57387809	57387865	12394221	0	-	0.589286	(0.53,0.59]	chr11	958603	2	CDS	CDS:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	1003	2	7.32468	7.901775000000001	8.47887	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	28861368	28861440	16488300	0	-	0.416667	(0.39,0.42]	chr17	1348319	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:PRIMIRNA	MIR451A:MIR144:RP11-20B24.2:MIR4732	ENSG00000284565.1:ENSG00000283819.1:ENSG00000264066.6:ENSG00000284085.1	ENST00000385059.1:ENST00000384886.3:ENST00000582320.2:ENST00000581873.1	miRNA	miRNA	miRNA:lncRNA	miRNA:lncRNA:primary_miRNA	0	222	2	7.38369	7.8926549999999995	8.40162	1.07359e-12	1e-12	2.46312e-10	2.40099e-10
chrX	315799	315886	18924686	0	-	0.494253	(0.49,0.53]	chrX	1612796	1	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	7.86565	7.87729	7.88893	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	112917273	112917369	1232350	0	-	0.447917	(0.42,0.455]	chr1	120462	2	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	790	2	7.45059	7.809815	8.16904	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	87728584	87728675	10347561	0	+	0.494505	(0.49,0.53]	chr9	778725	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	222	2	7.67378	7.8056350000000005	7.93749	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	18279936	18280018	17499038	0	-	0.378049	(0.36,0.39]	chr19	1468044	4	UTR3	UTR3:EXON_MRNA	JUND	ENSG00000130522.6	ENST00000252818.5	protein_coding	protein_coding	protein_coding	protein_coding	1	333	2	7.18274	7.804639999999999	8.42654	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62632564	62632654	12409785	0	-	0.544444	(0.53,0.59]	chr11	961285	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000526732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	968	2	7.33473	7.799415	8.2641	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	143575102	143575201	6271870	0	+	0.484848	(0.455,0.49]	chr5	489134	127	INTRON	INTRON	CTD-2050E21.2	ENSG00000251205.3	ENST00000661617.1	lncRNA	lncRNA	lncRNA	lncRNA	0	223	2	7.35892	7.796085	8.23325	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	107386439	107386539	8984815	0	-	0.57	(0.53,0.59]	chr7	687372	133	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	476	2	7.72522	7.780745	7.83627	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	216879737	216879837	2384955	0	+	0.31	(0.29,0.33]	chr2	214156	82	INTRON	INTRON	AC007563.5	ENSG00000236886.2	ENST00000447289.1:ENST00000607591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	235	2	6.72368	7.7749	8.82612	5.50058e-11	1e-12	8.7771e-9	2.25522e-10
chr9	91905381	91905481	10734854	0	-	0.4	(0.39,0.42]	chr9	812027	183	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	198	2	7.72407	7.7735	7.82293	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	316149	316237	18924690	0	-	0.477273	(0.455,0.49]	chrX	1612796	5	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	366	2	6.57056	7.760655	8.95075	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	58315076	58315174	17412349	0	+	0.418367	(0.39,0.42]	chr19	1450968	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CTD-3138B18.4:ZNF8-ERVK3-1:ERVK3-1	ENSG00000283515.1:ENSG00000267216.1:ENSG00000142396.10	ENST00000637233.1:ENST00000591325.1:ENST00000413518.5:ENST00000427361.5:ENST00000590505.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	215	2	7.19839	7.75246	8.30653	1.01197e-12	1e-12	2.48967e-10	2.25522e-10
chr21	45474381	45474481	18145523	0	+	0.5	(0.49,0.53]	chr21	1539684	4	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	4	1052	2	7.60819	7.73901	7.86983	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	96860261	96860352	2792223	0	-	0.483516	(0.455,0.49]	chr2	249221	7	UTR3	UTR3:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	528	2	6.28565	7.72144	9.15723	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	49607149	49607220	7729617	0	-	0.549296	(0.53,0.59]	chr6	592944	1	CDS	CDS:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	3	642	2	6.74162	7.718985	8.69635	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	69103945	69104020	11094163	0	+	0.506667	(0.49,0.53]	chr10	843404	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	209	2	7.50484	7.71538	7.92592	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	111397173	111397273	13091579	0	+	0.69	(0.59,1]	chr12	1021069	3	SS5_PROX	SS5_PROX:INTRON	LINC02356	ENSG00000257595.3	ENST00000552663.2:ENST00000548846.1	lncRNA	lncRNA	lncRNA	lncRNA	0	326	2	6.83228	7.701650000000001	8.57102	1.49032e-7	1e-12	8.86859e-6	2.25522e-10
chr11	6614865	6614928	12249925	0	-	0.587302	(0.53,0.59]	chr11	946838	1	CDS	CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	234	2	7.20629	7.700794999999999	8.1953	3.07772e-11	1e-12	5.24777e-9	2.25522e-10
chr2	20034316	20034415	2539738	0	-	0.444444	(0.42,0.455]	chr2	228413	1	CDS	CDS:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5:ENST00000483117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	409	2	7.66195	7.700395	7.73884	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	14565617	14565663	17243475	0	+	0.608696	(0.59,1]	chr19	1422064	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000598333.5:ENST00000597607.5:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	279	2	7.42554	7.6951599999999996	7.96478	2.71796e-9	2.1634e-11	2.73726e-7	3.47341e-9
chr11	1753802	1753901	12230425	0	-	0.575758	(0.53,0.59]	chr11	944381	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636579.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000497544.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	435	2	6.18745	7.69474	9.20203	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	59551251	59551350	11958570	0	+	0.515152	(0.49,0.53]	chr11	915353	49	INTRON	INTRON	CMB9-60A24.1	ENSG00000287264.1	ENST00000659845.1	lncRNA	lncRNA	lncRNA	lncRNA	42	7467	2	6.96723	7.684150000000001	8.40107	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	102854216	102854287	13881025	0	+	0.464789	(0.455,0.49]	chr13	1087991	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BIVM-ERCC5:ERCC5	ENSG00000270181.3:ENSG00000134899.24	ENST00000639435.1:ENST00000639132.1:ENST00000638434.1:ENST00000651002.1:ENST00000535557.5:ENST00000652613.1:ENST00000683246.1:ENST00000682632.1:ENST00000652225.2:ENST00000682869.1:ENST00000684184.1:ENST00000651470.1:ENST00000651055.1:ENST00000651281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	207	2	7.19724	7.675295	8.15335	3.07387e-12	1e-12	6.63274e-10	2.25522e-10
chr3	42117528	42117628	3433893	0	+	0.52	(0.49,0.53]	chr3	298614	256	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	7.29448	7.67215	8.04982	2.64955e-12	1e-12	5.82546e-10	2.25522e-10
chr10	98696838	98696938	11652018	0	-	0.53	(0.49,0.53]	chr10	887974	25	INTRON	INTRON	HPSE2	ENSG00000172987.13	ENST00000370552.8:ENST00000404542.5:ENST00000370549.5:ENST00000628193.2:ENST00000370546.5	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	7.17663	7.660285	8.14394	8.8568e-12	1e-12	1.70817e-9	2.25522e-10
chr1	161000280	161000348	1331452	0	-	0.573529	(0.53,0.59]	chr1	136447	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1:ENST00000335772.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	388	2	6.48657	7.64781	8.80905	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	54732740	54732840	14297058	0	+	0.39	(0.36,0.39]	chr14	1117430	290	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000557013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	248	2	6.4602	7.64166	8.82312	1.37652e-9	1e-12	1.50612e-7	2.25522e-10
chr22	49527395	49527495	18543138	0	-	0.42	(0.39,0.42]	chr22	1583944	858	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	311	2	7.49023	7.63672	7.78321	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	18388743	18388835	17258401	0	+	0.684783	(0.59,1]	chr19	1425388	6	CDS	CDS:EXON_MRNA	GDF15	ENSG00000130513.6	ENST00000252809.3	protein_coding	protein_coding	protein_coding	protein_coding	0	309	2	6.77469	7.6314	8.48811	2.14798e-7	1e-12	1.21029e-5	2.25522e-10
chr19	6532485	6532585	17213500	0	+	0.47	(0.455,0.49]	chr19	1415914	3	SS3_PROX	SS3_PROX:INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	2	421	2	6.27042	7.629365	8.98831	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	120446365	120446427	19196228	0	-	0.467742	(0.455,0.49]	chrX	1631991	2	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	197	2	7.19724	7.622035	8.04683	3.07387e-12	1e-12	6.63274e-10	2.25522e-10
chr4	164188701	164188799	5204337	0	+	0.408163	(0.39,0.42]	chr4	420030	5	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	436	2	7.22169	7.621745000000001	8.0218	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	20655439	20655534	882283	0	-	0.515789	(0.49,0.53]	chr1	91138	1	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1	protein_coding	protein_coding	protein_coding	protein_coding	1	333	2	6.63122	7.600764999999999	8.57031	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	91322583	91322683	8393182	0	+	0.46	(0.455,0.49]	chr7	639160	12	INTRON	INTRON	RP11-115N4.1	ENSG00000243144.7	ENST00000449361.5:ENST00000418395.1:ENST00000419226.5	lncRNA	lncRNA	lncRNA	lncRNA	0	226	2	6.68991	7.598345	8.50678	5.0034e-10	1e-12	6.24299e-8	2.25522e-10
chr5	169895911	169896011	6976074	0	-	0.5	(0.49,0.53]	chr5	533091	107	INTRON	INTRON	INSYN2B	ENSG00000204767.4	ENST00000377365.4:ENST00000523970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	369	2	7.46019	7.5884149999999995	7.71664	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	75571780	75571847	12023387	0	+	0.567164	(0.53,0.59]	chr11	927025	1	CDS	CDS:UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000533449.6:ENST00000525876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	204	2	7.5565	7.58769	7.61888	1.12177e-12	1e-12	2.49277e-10	2.46312e-10
chr1	226071929	226072019	738423	0	+	0.311111	(0.29,0.33]	chr1	74476	6	UTR3	UTR3:EXON_MRNA	H3-3A	ENSG00000163041.13	ENST00000366815.10:ENST00000655399.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	7.49558	7.586790000000001	7.678	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	67585501	67585601	9871525	0	-	0.36	(0.33,0.36]	chr8	746465	671	INTRON	INTRON	CPA6	ENSG00000165078.13	ENST00000297770.10:ENST00000638254.1:ENST00000479862.6:ENST00000518549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	1525	2	7.01565	7.58644	8.15723	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	91905481	91905581	10734855	0	-	0.39	(0.36,0.39]	chr9	812027	184	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	359	2	6.3114	7.577304999999999	8.84321	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	78762429	78762529	16696531	0	-	0.41	(0.39,0.42]	chr17	1376000	256	INTRON	INTRON	CYTH1	ENSG00000108669.16	ENST00000589296.5:ENST00000446868.7:ENST00000361101.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	670	2	7.01335	7.560935000000001	8.10852	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	34657835	34657929	5928096	0	+	0.478723	(0.455,0.49]	chr5	464492	5	INTRON	INTRON	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000514527.5:ENST00000510319.5:ENST00000514931.5:ENST00000513974.5:ENST00000512629.5:ENST00000428746.6:ENST00000514873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	309	2	6.52234	7.55367	8.585	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	44233791	44233878	7161528	0	+	0.574713	(0.53,0.59]	chr6	553816	4	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding	3	806	2	7.16581	7.538655	7.9115	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	1759577	1759639	12230492	0	-	0.629032	(0.59,1]	chr11	944409	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000677300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	249	2	7.30868	7.538315	7.76795	6.17803e-9	1.00804e-10	5.579e-7	1.36949e-8
chr1	202471947	202472032	1450453	0	-	0.423529	(0.42,0.455]	chr1	145717	2	EXON_PSEUDO	EXON_PSEUDO	RP11-175B9.3	ENSG00000236439.4	ENST00000422457.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	647	2	7.32085	7.527585	7.73432	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	123735130	123735230	13128370	0	+	0.42	(0.39,0.42]	chr12	1026084	2	SS3_PROX	SS3_PROX:INTRON	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000613625.5:ENST00000675344.1:ENST00000540368.6:ENST00000504192.2:ENST00000674794.1:ENST00000545059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	174	2	6.95376	7.524865	8.09597	8.21028e-11	1e-12	1.14209e-8	2.46312e-10
chr9	136042644	136042744	10888100	0	-	0.48	(0.455,0.49]	chr9	826903	233	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	203	2	6.64816	7.520265	8.39237	1.62448e-9	1e-12	1.61468e-7	2.46312e-10
chr5	141298134	141298234	6874779	0	-	0.58	(0.53,0.59]	chr5	526336	338	INTRON	INTRON	TAF7	ENSG00000178913.8	ENST00000624699.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	1966	2	6.45924	7.519785000000001	8.58033	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	177593649	177593712	6407876	0	+	0.603175	(0.59,1]	chr5	498322	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000505521.1:ENST00000507723.1:ENST00000513799.5:ENST00000507578.1:ENST00000510499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	995	2	6.984	7.518405	8.05281	2.62698e-11	1e-12	4.55356e-9	2.25522e-10
chr19	11441239	11441298	17231176	0	+	0.627119	(0.59,1]	chr19	1419895	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000589126.5:ENST00000587509.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	251	2	7.12119	7.51621	7.91123	2.23396e-8	3.30029e-11	1.68818e-6	5.05449e-9
chr6	162702347	162702447	8068523	0	-	0.31	(0.29,0.33]	chr6	616047	69	INTRON	INTRON	PRKN	ENSG00000185345.23	ENST00000366898.6:ENST00000366897.5:ENST00000366896.5:ENST00000366894.6:ENST00000338468.8:ENST00000479615.5:ENST00000674501.1:ENST00000366892.5:ENST00000674232.1:ENST00000674493.1:ENST00000674395.1:ENST00000674176.1:ENST00000674250.1:ENST00000647006.2:ENST00000642604.1:ENST00000674224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	252	2	6.30914	7.5154	8.72166	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	1831265	1831364	13170570	0	-	0.686869	(0.59,1]	chr12	1030273	192	INTRON	INTRON	CACNA2D4	ENSG00000151062.15	ENST00000280663.12:ENST00000382722.10:ENST00000537784.5:ENST00000444595.6:ENST00000587995.5:ENST00000588077.5:ENST00000586184.5:ENST00000585708.5:ENST00000585732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	268	2	6.81334	7.50608	8.19882	1.68153e-7	3.32379e-12	9.86589e-6	6.55146e-10
chr11	2395415	2395467	11764963	0	+	0.576923	(0.53,0.59]	chr11	900172	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000530239.1:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	200	2	7.09162	7.501295	7.91097	8.98392e-11	1e-12	1.36373e-8	2.25522e-10
chr3	73648398	73648479	4283658	0	-	0.592593	(0.59,1]	chr3	358597	1	EXON_PSEUDO	EXON_PSEUDO	RP11-451J24.1	ENSG00000242364.1	ENST00000495472.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	247	2	7.13651	7.50077	7.86503	2.01432e-8	4.7406500000000003e-11	1.54569e-6	6.99927e-9
chr13	52177934	52178032	14033146	0	-	0.346939	(0.33,0.36]	chr13	1100727	18	INTRON	INTRON	RP11-248G5.8:MRPS31P5	ENSG00000217576.7:ENSG00000243406.6	ENST00000451298.1:ENST00000416599.5:ENST00000606974.5:ENST00000423686.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	0	209	2	6.33446	7.47863	8.6228	3.50098e-9	1e-12	3.39963e-7	2.25522e-10
chr6	11502512	11502611	7053634	0	+	0.282828	[0,0.29]	chr6	540155	117	INTRON	INTRON	RP11-716O23.2	ENSG00000242753.2	ENST00000665550.1:ENST00000423149.1	lncRNA	lncRNA	lncRNA	lncRNA	0	135	2	7.23808	7.468835	7.69959	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	20652850	20652910	882250	0	-	0.45	(0.42,0.455]	chr1	91118	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000475210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	192	2	6.73119	7.45927	8.18735	2.53502e-10	1e-12	3.43829e-8	2.25522e-10
chr2	203190672	203190767	2321857	0	+	0.526316	(0.49,0.53]	chr2	210348	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NBEAL1	ENSG00000144426.19	ENST00000683969.1:ENST00000449802.5:ENST00000681967.1:ENST00000683338.1:ENST00000683001.1:ENST00000682108.1:ENST00000414576.6:ENST00000460355.1:ENST00000683650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	174	2	7.34999	7.45828	7.56657	1.4857e-12	1e-12	3.50251e-10	2.25522e-10
chr11	62630757	62630836	12409765	0	-	0.632911	(0.59,1]	chr11	961275	3	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	1219	2	5.08662	7.451515	9.81641	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62631029	62631106	12409769	0	-	0.532468	(0.53,0.59]	chr11	961279	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	1381	2	7.40266	7.44775	7.49284	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	44351713	44351795	16234927	0	+	0.585366	(0.53,0.59]	chr17	1314579	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000589923.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	185	2	7.32947	7.442985	7.5565	9.48908e-12	1.12177e-12	1.81669e-9	2.49277e-10
chr21	10014978	10015078	18159224	0	-	0.32	(0.29,0.33]	chr21	1541944	115	INTRON	INTRON	bP-21201H5.1	ENSG00000270533.2	ENST00000625012.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	152	2	6.87839	7.44164	8.00489	9.94593e-12	1e-12	1.90067e-9	2.25522e-10
chr12	88183971	88184070	13006029	0	+	0.555556	(0.53,0.59]	chr12	1012767	73	INTRON	INTRON	TMTC3	ENSG00000139324.12	ENST00000547034.5:ENST00000266712.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	392	2	7.36282	7.434695	7.50657	6.87184e-12	1e-12	1.35666e-9	2.25522e-10
chrX	315699	315799	18924685	0	-	0.47	(0.455,0.49]	chrX	1612795	4	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	280	2	6.97152	7.42731	7.8831	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	55052277	55052344	203725	0	+	0.567164	(0.53,0.59]	chr1	26136	1	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	191	2	6.9452	7.41677	7.88834	3.40615e-10	1e-12	4.47455e-8	2.25522e-10
chr11	6616660	6616717	12249952	0	-	0.561404	(0.53,0.59]	chr11	946855	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	181	2	7.39541	7.41614	7.43687	4.99978e-12	3.6614e-12	1.02184e-9	7.14029e-10
chr9	125466672	125466772	10856587	0	-	0.62	(0.59,1]	chr9	822423	157	INTRON	INTRON	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000373498.5:ENST00000444226.1:ENST00000483937.5:ENST00000497932.5:ENST00000496063.1:ENST00000420643.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	289	2	6.34438	7.41319	8.482	2.85814e-6	1e-12	1.07102e-4	2.25522e-10
chr14	54650782	54650882	14296228	0	+	0.46	(0.455,0.49]	chr14	1117386	823	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	315	2	7.30133	7.4114	7.52147	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	6617300	6617364	12249962	0	-	0.578125	(0.53,0.59]	chr11	946863	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	180	2	7.38933	7.408305	7.42728	5.81502e-12	3.65896e-12	1.07598e-9	7.74293e-10
chr11	62888417	62888505	11974495	0	+	0.545455	(0.53,0.59]	chr11	918078	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000542922.5:ENST00000539507.1:ENST00000542793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	582	2	7.06659	7.40398	7.74137	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	40089460	40089512	954842	0	-	0.519231	(0.49,0.53]	chr1	100892	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	335	2	7.37694	7.39888	7.42082	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	29664192	29664283	15626151	0	+	0.582418	(0.53,0.59]	chr16	1239195	5	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	343	2	6.00003	7.3985	8.79697	6.13221e-12	1e-12	1.12542e-9	2.46312e-10
chr13	25097794	25097894	13647301	0	+	0.47	(0.455,0.49]	chr13	1075795	16	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	0	201	2	6.42359	7.393409999999999	8.36323	5.69021e-9	1e-12	5.19009e-7	2.25522e-10
chr7	101212592	101212655	8953703	0	-	0.634921	(0.59,1]	chr7	684691	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000460475.1:ENST00000478264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	223	2	7.26753	7.3918800000000005	7.51623	8.22018e-9	6.8268e-10	7.18399e-7	7.4503e-8
chr10	71828085	71828157	11563337	0	-	0.527778	(0.49,0.53]	chr10	880003	2	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	5	1020	2	6.75092	7.389435000000001	8.02795	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	112917755	112917851	1232355	0	-	0.520833	(0.49,0.53]	chr1	120462	7	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	498	2	7.24794	7.388294999999999	7.52865	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	8226199	8226298	16432239	0	-	0.454545	(0.42,0.455]	chr17	1340380	15	UTR3	UTR3:EXON_MRNA	CTC1	ENSG00000178971.16	ENST00000651323.1	protein_coding	protein_coding	protein_coding	protein_coding	18	2847	2	7.32515	7.38772	7.45029	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	869663	869761	5276279	0	-	0.469388	(0.455,0.49]	chr4	424387	11	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	159	2	7.15841	7.38143	7.60445	1.29933e-11	1e-12	2.19315e-9	2.46312e-10
chr1	25389044	25389113	904060	0	-	0.57971	(0.53,0.59]	chr1	94020	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	176	2	7.36282	7.376075	7.38933	6.87184e-12	5.81502e-12	1.35666e-9	1.07598e-9
chr21	34843299	34843399	18227297	0	-	0.42	(0.39,0.42]	chr21	1546914	83	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	149	2	7.32958	7.372795	7.41601	1.88516e-12	1e-12	3.97641e-10	2.46312e-10
chr22	49527295	49527395	18543137	0	-	0.45	(0.42,0.455]	chr22	1583944	857	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	353	2	6.8177	7.37249	7.92728	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	57387474	57387533	12394216	0	-	0.559322	(0.53,0.59]	chr11	958599	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	190	2	6.77617	7.3687249999999995	7.96128	1.61388e-9	1e-12	1.60735e-7	2.46312e-10
chr19	48911148	48911200	17367728	0	+	0.461538	(0.455,0.49]	chr19	1442124	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	321	2	7.33967	7.36871	7.39775	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	128064876	128064956	3725134	0	+	0.5375	(0.53,0.59]	chr3	318488	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	186	2	6.85434	7.36562	7.8769	7.63084e-10	1e-12	9.03558e-8	2.25522e-10
chr8	66114022	66114096	9375218	0	+	0.675676	(0.59,1]	chr8	716189	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AC084082.3	ENSG00000253190.4	ENST00000520930.1:ENST00000671118.1:ENST00000659894.1:ENST00000660814.1:ENST00000655427.1:ENST00000652875.1:ENST00000517961.3:ENST00000653437.1:ENST00000663048.1	lncRNA	lncRNA	lncRNA	lncRNA	10	3246	2	6.78133	7.36224	7.94315	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	30313168	30313268	17285139	0	+	0.63	(0.59,1]	chr19	1428550	126	INTRON	INTRON	ZNF536	ENSG00000198597.9	ENST00000585628.5:ENST00000591488.1	protein_coding	protein_coding	protein_coding	protein_coding	1	483	2	5.69773	7.3599	9.02207	3.65718e-9	1e-12	3.52173e-7	2.25522e-10
chr6	98399669	98399769	7295768	0	+	0.33	(0.29,0.33]	chr6	561669	13	EXON_LNCRNA	EXON_LNCRNA	RP11-436D23.1	ENSG00000271860.7	ENST00000667070.1:ENST00000607823.5:ENST00000657672.1	lncRNA	lncRNA	lncRNA	lncRNA	0	187	2	6.1856	7.358655000000001	8.53171	1.19342e-8	1e-12	9.89575e-7	2.25522e-10
chr12	7827494	7827588	13192488	0	-	0.531915	(0.53,0.59]	chr12	1033400	1	CDS	CDS:EXON_MRNA:INTRON	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	7.13086	7.35789	7.58492	6.24339e-11	1e-12	9.79036e-9	2.25522e-10
chr5	176585284	176585368	6403168	0	+	0.392857	(0.39,0.42]	chr5	497487	3	SS5_PROX	SS5_PROX:INTRON	CDHR2	ENSG00000074276.10	ENST00000510636.5:ENST00000261944.9:ENST00000506348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	327	2	5.86851	7.340845	8.81318	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	110874186	110874286	1992132	0	+	0.63	(0.59,1]	chr2	189124	324	INTRON	INTRON	ACOXL	ENSG00000153093.20	ENST00000676595.1:ENST00000439055.6:ENST00000389811.8:ENST00000340561.8:ENST00000417074.5:ENST00000433706.5	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	6.42145	7.335745	8.25004	1.83275e-6	2.19935e-12	7.37353e-5	4.57007e-10
chr19	580721	580782	17188311	0	+	0.557377	(0.53,0.59]	chr19	1410772	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	1223	2	6.82723	7.33446	7.84169	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	12880801	12880880	17471789	0	-	0.594937	(0.59,1]	chr19	1463263	1	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000592506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	276	2	6.23477	7.330295	8.42582	5.29741e-6	1e-12	1.78149e-4	2.25522e-10
chr17	44075787	44075865	16234049	0	+	0.589744	(0.53,0.59]	chr17	1314332	2	CDS	CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	177	2	6.92302	7.3274799999999995	7.73194	4.15369e-10	1e-12	5.31939e-8	2.25522e-10
chrY	20764252	20764351	19325537	0	+	0.434343	(0.42,0.455]	chrY	1642740	25	INTRON	INTRON	RPS4Y2	ENSG00000280969.2	ENST00000629237.2	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.98178	7.31765	7.65352	2.06106e-11	1e-12	3.6514e-9	2.25522e-10
chr9	133124139	133124239	10879219	0	-	0.48	(0.455,0.49]	chr9	825573	30	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.35861	7.31715	8.27569	1.95116e-8	1e-12	1.37715e-6	2.46312e-10
chr6	49619270	49619362	7729746	0	-	0.413043	(0.39,0.42]	chr6	592980	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	1274	2	6.61312	7.3156550000000005	8.01819	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	23633915	23633999	17930487	0	-	0.52381	(0.49,0.53]	chr20	1517746	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	1	305	2	5.80722	7.306654999999999	8.80609	1.80427e-11	1e-12	3.21406e-9	2.25522e-10
chr1	23519015	23519072	896363	0	-	0.631579	(0.59,1]	chr1	93119	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	E2F2	ENSG00000007968.7	ENST00000361729.3:ENST00000487237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	210	2	7.18152	7.305765	7.43001	1.48385e-8	1.29452e-9	1.18753e-6	1.3204e-7
chr16	3191437	3191537	15497133	0	+	0.49	(0.455,0.49]	chr16	1228504	1	SS5_PROX	SS5_PROX:INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	26	3951	2	7.08179	7.3028949999999995	7.524	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	74997316	74997415	12021675	0	+	0.434343	(0.42,0.455]	chr11	926829	22	INTRON	INTRON	NEU3	ENSG00000162139.10	ENST00000531509.5:ENST00000529024.1:ENST00000294064.9:ENST00000532963.1:ENST00000531619.1	protein_coding	protein_coding	protein_coding	protein_coding	11	2085	2	5.63681	7.3004999999999995	8.96419	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	6614928	6614991	12249926	0	-	0.52381	(0.49,0.53]	chr11	946838	2	CDS	CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	164	2	6.83142	7.29767	7.76392	2.582e-10	1e-12	3.48617e-8	2.25522e-10
chr13	111182142	111182242	13898375	0	+	0.61	(0.59,1]	chr13	1089221	227	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	220	2	6.77469	7.29113	7.80757	2.14798e-7	7.41744e-11	1.21029e-5	1.04474e-8
chr2	166609636	166609736	2997553	0	-	0.57	(0.53,0.59]	chr2	265421	356	INTRON	INTRON	SCN7A	ENSG00000136546.16	ENST00000650747.1	protein_coding	protein_coding	protein_coding	protein_coding	9	2027	2	6.66654	7.29102	7.9155	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	106097758	106097827	8977686	0	-	0.42029	(0.42,0.455]	chr7	687040	2	CDS	CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	151	2	7.03201	7.290685	7.54936	1.22439e-11	1e-12	2.27934e-9	2.25522e-10
chr11	62630678	62630757	12409764	0	-	0.493671	(0.49,0.53]	chr11	961275	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	766	2	7.23023	7.28139	7.33255	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	133124039	133124139	10879218	0	-	0.47	(0.455,0.49]	chr9	825573	29	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	165	2	6.52658	7.280135	8.03369	4.72215e-9	1e-12	4.04884e-7	2.46312e-10
chr1	20652620	20652673	882245	0	-	0.471698	(0.455,0.49]	chr1	91114	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000475210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	148	2	7.08614	7.269825	7.45351	9.85012e-12	1e-12	1.88409e-9	2.25522e-10
chr13	23734344	23734444	13930671	0	-	0.5	(0.49,0.53]	chr13	1092907	35	INTRON	INTRON	MIPEP	ENSG00000027001.10	ENST00000382172.4:ENST00000433710.2:ENST00000464194.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	678	2	6.14948	7.269605	8.38973	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	630830	630930	823337	0	-	0.49	(0.455,0.49]	chr1	81476	3	SS5_PROX	SS5_PROX:INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	78	11035	2	6.706	7.263955	7.82191	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	125613082	125613177	12194462	0	+	0.452632	(0.42,0.455]	chr11	940778	2	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	1123	2	6.43629	7.259234999999999	8.08218	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	91642710	91642808	350537	0	+	0.285714	[0,0.29]	chr1	34388	3	EXON_PSEUDO	EXON_PSEUDO	HSP90B3P	ENSG00000203914.4	ENST00000415545.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	186	2	5.89924	7.256069999999999	8.6129	1.43969e-7	1e-12	8.58934e-6	2.25522e-10
chrX	153703958	153704026	19273647	0	-	0.529412	(0.49,0.53]	chrX	1637365	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.51266	7.253705	7.99475	4.62014e-9	1e-12	4.31971e-7	2.25522e-10
chr19	46787399	46787492	17595591	0	-	0.655914	(0.59,1]	chr19	1481428	1	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	2	559	2	5.43228	7.24997	9.06766	3.93552e-10	1e-12	5.0805e-8	2.25522e-10
chrX	47585204	47585259	18687908	0	+	0.509091	(0.49,0.53]	chrX	1593564	1	CDS	CDS:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000441738.1	protein_coding	protein_coding	protein_coding	protein_coding	4	764	2	6.88959	7.246765	7.60394	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	73373263	73373362	7795159	0	-	0.50505	(0.49,0.53]	chr6	597081	1	INTRON	INTRON	OOEP	ENSG00000203907.10	ENST00000370363.5:ENST00000441145.1	protein_coding	protein_coding	protein_coding	protein_coding	5	914	2	7.14741	7.245445	7.34348	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	23065659	23065759	97600	0	+	0.34	(0.33,0.36]	chr1	11251	2	SS3_PROX	SS3_PROX:INTRON	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding	1	204	2	6.35041	7.24142	8.13243	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	85400437	85400537	15795322	0	+	0.45	(0.42,0.455]	chr16	1256986	411	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.4454	7.235945000000001	8.02649	1.07351e-8	1e-12	8.24229e-7	2.46312e-10
chr5	134780054	134780150	6231249	0	+	0.385417	(0.36,0.39]	chr5	485342	20	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.89201	7.2349499999999995	7.57789	1.68364e-11	1e-12	3.0238e-9	2.25522e-10
chr17	20785135	20785233	16163492	0	+	0.469388	(0.455,0.49]	chr17	1303908	6	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	318	2	5.4033	7.23196	9.06062	7.61238e-10	1e-12	9.03421e-8	2.25522e-10
chr9	26100001	26100100	10228405	0	+	0.373737	(0.36,0.39]	chr9	768651	50	INTRON	INTRON	RP11-80I3.1	ENSG00000276759.2	ENST00000612217.2	lncRNA	lncRNA	lncRNA	lncRNA	0	189	2	6.02248	7.23133	8.44018	7.00159e-8	1e-12	4.55874e-6	2.25522e-10
chr1	160352053	160352129	496738	0	+	0.565789	(0.53,0.59]	chr1	53469	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	161	2	7.00978	7.23108	7.45238	1.90163e-10	3.1426e-12	2.66398e-8	6.23306e-10
chr4	869272	869369	5276275	0	-	0.484536	(0.455,0.49]	chr4	424387	7	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	143	2	7.00753	7.229505	7.45148	5.73416e-11	1e-12	8.29069e-9	2.46312e-10
chr11	1754901	1755001	12230438	0	-	0.56	(0.53,0.59]	chr11	944389	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000497544.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	459	2	6.26516	7.224	8.18284	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	80652040	80652138	6667616	0	-	0.397959	(0.39,0.42]	chr5	514741	21	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	166	2	6.36289	7.223895	8.0849	4.91294e-9	1e-12	4.54263e-7	2.25522e-10
chr11	117035881	117035966	12616184	0	-	0.423529	(0.42,0.455]	chr11	978515	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	SIK3:AP000936.1	ENSG00000160584.17:ENSG00000234268.1	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1:ENST00000438127.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	4	679	2	6.93756	7.22156	7.50556	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	6614545	6614645	12249921	0	-	0.57	(0.53,0.59]	chr11	946835	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	1	282	2	6.52316	7.22011	7.91706	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	125605681	125605735	12194378	0	+	0.462963	(0.455,0.49]	chr11	940744	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526213.5:ENST00000527456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	146	2	6.8884	7.219335	7.55027	7.31774e-11	1e-12	1.12969e-8	2.25522e-10
chr21	45474181	45474281	18145521	0	+	0.51	(0.49,0.53]	chr21	1539684	2	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.88399	7.210485	7.53698	2.51067e-10	1e-12	3.07559e-8	2.46312e-10
chrX	120448969	120449048	19196257	0	-	0.405063	(0.39,0.42]	chrX	1632003	1	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	180	2	6.13643	7.2073350000000005	8.27824	3.57957e-8	1e-12	2.56228e-6	2.25522e-10
chrX	153798070	153798136	18916210	0	+	0.530303	(0.53,0.59]	chrX	1611457	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5:ENST00000447375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	612	2	5.74166	7.205590000000001	8.66952	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	120455427	120455498	19196323	0	-	0.464789	(0.455,0.49]	chrX	1632009	2	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.99065	7.205204999999999	7.41976	2.62328e-11	1e-12	4.55093e-9	2.25522e-10
chr1	148302747	148302846	1279915	0	-	0.59596	(0.59,1]	chr1	126905	56	INTRON	INTRON	LINC01138	ENSG00000274020.4	ENST00000640832.1:ENST00000638958.1:ENST00000652758.1	lncRNA	lncRNA	lncRNA	lncRNA	20	6133	2	7.16152	7.19944	7.23736	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	65172683	65172765	11982588	0	+	0.646341	(0.59,1]	chr11	919945	1	CDS	CDS:EXON_MRNA	SPDYC	ENSG00000204710.2	ENST00000377185.2	protein_coding	protein_coding	protein_coding	protein_coding	0	214	2	6.5414	7.198505000000001	7.85561	9.02377e-7	5.10195e-11	4.05425e-5	7.4789e-9
chr10	45073541	45073638	11465648	0	-	0.381443	(0.36,0.39]	chr10	874296	1	INTRON	INTRON	RP11-285G1.15:CEP164P1	ENSG00000277757.4:ENSG00000226937.9	ENST00000602156.5:ENST00000599308.3:ENST00000625472.1:ENST00000608660.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript	0	187	2	5.96451	7.197945000000001	8.43138	1.13061e-7	1e-12	6.97642e-6	2.25522e-10
chr19	40378073	40378173	17328738	0	+	0.62	(0.59,1]	chr19	1435588	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000488311.1:ENST00000486134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	279	2	5.88171	7.197	8.51229	3.41939e-5	1e-12	8.3505e-4	2.25522e-10
chr17	82717851	82717943	16385052	0	+	0.369565	(0.36,0.39]	chr17	1332775	6	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	204	2	6.6748	7.194755000000001	7.71471	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	49527495	49527595	18543139	0	-	0.49	(0.455,0.49]	chr22	1583944	859	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	417	2	6.71791	7.18464	7.65137	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	55595228	55595319	5433375	0	-	0.252747	[0,0.29]	chr4	434873	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	258	2	5.42813	7.170755	8.91338	2.45903e-12	1e-12	5.4583e-10	2.25522e-10
chr11	71437858	71437943	12444427	0	-	0.505882	(0.49,0.53]	chr11	966980	2	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1:ENST00000682880.1:ENST00000527316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	437	2	6.86444	7.1703600000000005	7.47628	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	42927672	42927740	966988	0	-	0.632353	(0.59,1]	chr1	101874	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	664	2	6.20546	7.16842	8.13138	1.43413e-11	1e-12	2.62534e-9	2.25522e-10
chr1	20654613	20654707	882273	0	-	0.56383	(0.53,0.59]	chr1	91132	1	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.75737	7.164075	7.57078	1.77309e-9	1e-12	1.87805e-7	2.25522e-10
chr11	63753661	63753708	11976801	0	+	0.425532	(0.42,0.455]	chr11	918370	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	145	2	6.66906	7.16129	7.65352	4.61389e-10	1e-12	5.82658e-8	2.25522e-10
chr1	181090080	181090177	587432	0	+	0.391753	(0.39,0.42]	chr1	60876	3	UTR3	UTR3:EXON_MRNA	IER5	ENSG00000162783.11	ENST00000367577.7	protein_coding	protein_coding	protein_coding	protein_coding	1	232	2	5.91116	7.15409	8.39702	2.67841e-12	1e-12	5.87656e-10	2.25522e-10
chr7	106093075	106093137	8977636	0	-	0.451613	(0.42,0.455]	chr7	687028	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1:ENST00000460770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	139	2	6.81965	7.152965	7.48628	1.06334e-10	1e-12	1.58306e-8	2.25522e-10
chr14	22575102	22575167	14526014	0	-	0.461538	(0.455,0.49]	chr14	1137870	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	141	2	6.74946	7.149865	7.55027	2.83793e-10	1e-12	3.79736e-8	2.25522e-10
chr1	25375348	25375428	903920	0	-	0.5625	(0.53,0.59]	chr1	94008	1	CDS	CDS:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.75737	7.142440000000001	7.52751	1.77309e-9	1.50013e-12	1.87805e-7	3.22669e-10
chr17	44352340	44352410	16234935	0	+	0.642857	(0.59,1]	chr17	1314585	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	196	2	6.6733	7.141075000000001	7.60885	4.04492e-7	3.40285e-10	2.05866e-5	4.0269e-8
chr6	44230346	44230413	7161485	0	+	0.626866	(0.59,1]	chr6	553789	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000647460.1:ENST00000646582.1:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	187	2	7.02569	7.1402350000000006	7.25478	4.23152e-8	4.63073e-9	2.95285e-6	3.98319e-7
chr11	18402839	18402851	11831510	0	+	0.333333	(0.33,0.36]	chr11	906016	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	117	2	6.99342	7.1398600000000005	7.2863	3.68083e-12	1.12599e-12	7.74293e-10	2.50055e-10
chr17	20785037	20785135	16163491	0	+	0.530612	(0.53,0.59]	chr17	1303908	5	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	205	2	5.93486	7.13945	8.34404	1.0295e-6	1e-12	4.52516e-5	2.25522e-10
chr8	30352452	30352549	9253457	0	+	0.484536	(0.455,0.49]	chr8	708964	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	302	2	6.19177	7.136295	8.08082	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	49614769	49614853	7729697	0	-	0.5	(0.49,0.53]	chr6	592962	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000646874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	1810	2	6.69291	7.1303	7.56769	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	20785233	20785331	16163493	0	+	0.510204	(0.49,0.53]	chr17	1303908	7	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	162	2	6.30364	7.126385	7.94913	2.6977e-8	1e-12	1.98827e-6	2.25522e-10
chr11	62638982	62639071	12409856	0	-	0.561798	(0.53,0.59]	chr11	961313	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	980	2	5.58215	7.1252	8.66825	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	50925138	50925237	12875781	0	+	0.494949	(0.49,0.53]	chr12	1000522	1	CDS	CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000550502.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	137	2	7.06598	7.1213049999999996	7.17663	4.48874e-11	8.8568e-12	6.67252e-9	1.70817e-9
chr1	206100098	206100198	678313	0	+	0.5	(0.49,0.53]	chr1	68596	3	SS5_PROX	SS5_PROX:INTRON	RHEX	ENSG00000263961.8	ENST00000331555.10:ENST00000603378.5:ENST00000603488.5:ENST00000582070.3	protein_coding	protein_coding	protein_coding	protein_coding	1	363	2	4.91905	7.1161650000000005	9.31328	7.12966e-8	1e-12	4.62482e-6	2.25522e-10
chr2	235521729	235521829	2443792	0	+	0.34	(0.33,0.36]	chr2	220916	143	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	245	2	5.95838	7.114455	8.27053	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62631106	62631183	12409770	0	-	0.558442	(0.53,0.59]	chr11	961279	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	1096	2	7.03659	7.113735	7.19088	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	21838911	21838998	890790	0	-	0.678161	(0.59,1]	chr1	92294	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.93521	7.108295	7.28138	4.30026e-8	7.46854e-9	2.69981e-6	6.61287e-7
chr11	48169449	48169548	11942514	0	+	0.565657	(0.53,0.59]	chr11	913473	22	UTR3	UTR3:EXON_MRNA	PTPRJ	ENSG00000149177.13	ENST00000613246.4:ENST00000418331.7	protein_coding	protein_coding	protein_coding	protein_coding	1	299	2	5.46255	7.09555	8.72855	9.79539e-10	1e-12	1.12603e-7	2.25522e-10
chr10	71819030	71819111	11563239	0	-	0.54321	(0.53,0.59]	chr10	879969	1	CDS	CDS:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000495196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	815	2	6.6	7.091035	7.58207	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	154367786	154367886	4532141	0	-	0.5	(0.49,0.53]	chr3	375707	131	INTRON	INTRON	GPR149	ENSG00000174948.6	ENST00000389740.3	protein_coding	protein_coding	protein_coding	protein_coding	6	850	2	6.75925	7.090574999999999	7.4219	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	44231363	44231461	7161499	0	+	0.479592	(0.455,0.49]	chr6	553800	1	CDS	CDS:UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000472176.2:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	189	2	5.79143	7.086155	8.38088	8.96581e-7	1e-12	4.03386e-5	2.25522e-10
chr8	97825057	97825153	9506950	0	+	0.4375	(0.42,0.455]	chr8	722762	1	CDS	CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.73119	7.0841449999999995	7.4371	2.53502e-10	1e-12	3.43829e-8	2.25522e-10
chr19	18175130	18175222	17257685	0	+	0.586957	(0.53,0.59]	chr19	1425235	2	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000597802.2:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	279	2	6.87002	7.082675	7.29533	1.31833e-11	1e-12	2.43685e-9	2.25522e-10
chr18	26422096	26422195	16797165	0	+	0.656566	(0.59,1]	chr18	1385790	5	INTRON	INTRON	LINC01543	ENSG00000263862.2	ENST00000660990.1	lncRNA	lncRNA	lncRNA	lncRNA	0	187	2	6.63066	7.0794	7.52814	5.25661e-7	6.24547e-10	2.57927e-5	6.87794e-8
chr17	63533287	63533385	16316977	0	+	0.612245	(0.59,1]	chr17	1323572	24	INTRON	INTRON	KCNH6	ENSG00000173826.15	ENST00000581784.5:ENST00000456941.6:ENST00000580652.5:ENST00000314672.10:ENST00000583465.1:ENST00000583023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	457	2	5.02173	7.07661	9.13149	3.79201e-7	1e-12	1.95857e-5	2.25522e-10
chr17	82718043	82718143	16385054	0	+	0.47	(0.455,0.49]	chr17	1332776	2	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	227	2	5.86425	7.0699700000000005	8.27569	1.10437e-11	1e-12	1.89988e-9	2.46312e-10
chr20	37207272	37207360	17777646	0	+	0.545455	(0.53,0.59]	chr20	1502030	1	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	508	2	5.69941	7.06519	8.43097	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	49527595	49527695	18543140	0	-	0.48	(0.455,0.49]	chr22	1583944	860	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	284	2	6.3595	7.0633	7.7671	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	44352481	44352552	16234937	0	+	0.605634	(0.59,1]	chr17	1314585	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.71472	7.05307	7.39142	3.12863e-7	1.7192e-9	1.66791e-5	1.69434e-7
chr6	126050426	126050526	7387034	0	+	0.57	(0.53,0.59]	chr6	566326	92	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	344	2	6.6534	7.046150000000001	7.4389	4.28786e-9	1e-12	4.06176e-7	2.25522e-10
chr1	161000212	161000280	1331451	0	-	0.470588	(0.455,0.49]	chr1	136447	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	142	2	6.34855	7.0442800000000005	7.74001	1.09383e-8	1e-12	9.21346e-7	2.25522e-10
chr5	75347256	75347309	6037013	0	+	0.45283	(0.42,0.455]	chr5	473607	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	128	2	6.73119	7.041195	7.3512	2.53502e-10	2.2361e-12	3.43829e-8	4.62988e-10
chr12	84894002	84894102	13444488	0	-	0.37	(0.36,0.39]	chr12	1057886	13	INTRON	INTRON	SLC6A15	ENSG00000072041.18	ENST00000266682.10:ENST00000681721.1:ENST00000679989.1:ENST00000681106.1:ENST00000679920.1:ENST00000680469.1:ENST00000681953.1:ENST00000680780.1:ENST00000679430.1:ENST00000681220.1:ENST00000680187.1:ENST00000680892.1:ENST00000681418.1:ENST00000680207.1:ENST00000680963.1:ENST00000552192.5:ENST00000679956.1:ENST00000679414.1:ENST00000680676.1:ENST00000551388.1:ENST00000679652.1:ENST00000681688.1:ENST00000680714.1:ENST00000450363.4:ENST00000679453.1:ENST00000681281.1:ENST00000547240.1:ENST00000681628.1:ENST00000679933.1:ENST00000680260.1:ENST00000551010.2:ENST00000549540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	114	2	6.64752	7.039125	7.43073	1.01488e-9	1e-12	1.06338e-7	2.46312e-10
chr19	38920649	38920729	17561720	0	-	0.475	(0.455,0.49]	chr19	1475319	1	INTRON	INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	141	2	6.24756	7.037825	7.82809	4.80845e-8	1e-12	2.97443e-6	2.46312e-10
chr6	49614686	49614769	7729696	0	-	0.566265	(0.53,0.59]	chr6	592962	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000646874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	1250	2	6.33611	7.03412	7.73213	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	33058175	33058264	4111573	0	-	0.505618	(0.49,0.53]	chr3	343511	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	136	2	6.5761	7.032545000000001	7.48899	2.65032e-9	1e-12	2.6743e-7	2.25522e-10
chr7	100580574	100580674	8951930	0	-	0.42	(0.39,0.42]	chr7	684087	19	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	123	2	6.47772	7.03248	7.58724	6.35056e-9	1e-12	5.21562e-7	2.46312e-10
chr6	49615697	49615771	7729708	0	-	0.527027	(0.49,0.53]	chr6	592968	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	1700	2	6.80193	7.030635	7.25934	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	119997263	119997352	11719748	0	-	0.348315	(0.33,0.36]	chr10	894246	3	EXON_PSEUDO	EXON_PSEUDO	NACAP2	ENSG00000180230.6	ENST00000318548.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	172	2	5.65729	7.02782	8.39835	1.06014e-6	1e-12	4.64027e-5	2.25522e-10
chr16	29664375	29664466	15626153	0	+	0.571429	(0.53,0.59]	chr16	1239195	7	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	249	2	5.95921	7.02774	8.09627	9.20231e-12	1e-12	1.61333e-9	2.46312e-10
chr11	125608198	125608289	12194406	0	+	0.494505	(0.49,0.53]	chr11	940755	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525431.1:ENST00000526726.1:ENST00000531001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	427	2	6.38927	7.025255	7.66124	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	42715397	42715496	12841077	0	+	0.313131	(0.29,0.33]	chr12	997521	71	INTRON	INTRON	LINC02450	ENSG00000257114.3	ENST00000660815.1:ENST00000662561.1:ENST00000660010.1:ENST00000550177.2:ENST00000667161.1:ENST00000655825.1:ENST00000655248.1	lncRNA	lncRNA	lncRNA	lncRNA	0	109	2	6.59567	7.024895	7.45412	2.14465e-10	1e-12	2.9627e-8	2.25522e-10
chr17	19446852	19446948	16472804	0	-	0.34375	(0.33,0.36]	chr17	1345837	1	INTRON	INTRON	AC004448.5	ENSG00000235979.9	ENST00000658570.1:ENST00000627753.1:ENST00000668984.1:ENST00000629630.1:ENST00000655270.1:ENST00000456537.6	lncRNA	lncRNA	lncRNA	lncRNA	0	179	2	5.57651	7.023854999999999	8.4712	1.91451e-6	1e-12	7.60536e-5	2.25522e-10
chr11	6615249	6615329	12249931	0	-	0.5625	(0.53,0.59]	chr11	946842	2	CDS	CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2:ENST00000436873.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	341	2	6.3685600000000004	7.020805	7.67305	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	160357040	160357111	496800	0	+	0.577465	(0.53,0.59]	chr1	53507	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	168	2	6.06212	7.014075	7.96603	4.23179e-7	1e-12	2.1371e-5	2.25522e-10
chr19	581406	581498	17188319	0	+	0.717391	(0.59,1]	chr19	1410776	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	2929	2	6.87567	7.012650000000001	7.14963	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62628849	62628930	12409737	0	-	0.555556	(0.53,0.59]	chr11	961253	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	433	2	5.65846	7.0125649999999995	8.36667	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	6532585	6532685	17213501	0	+	0.49	(0.455,0.49]	chr19	1415914	4	SS3_PROX	SS3_PROX:INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	2	272	2	5.76182	7.00856	8.2553	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	33409690	33409758	7121940	0	+	0.514706	(0.49,0.53]	chr6	547601	1	UTR3	UTR3:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	2	379	2	6.96427	7.004265	7.04426	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	40092108	40092172	954873	0	-	0.453125	(0.42,0.455]	chr1	100906	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2:ENST00000641548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	140	2	6.26925	7.003215000000001	7.73718	1.72732e-8	1e-12	1.35789e-6	2.25522e-10
chr11	62626390	62626447	12409704	0	-	0.491228	(0.49,0.53]	chr11	961233	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5:ENST00000531563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	238	2	5.61582	7.000769999999999	8.38572	1.24354e-10	1e-12	1.82531e-8	2.25522e-10
chr20	37210046	37210105	17777674	0	+	0.457627	(0.455,0.49]	chr20	1502036	1	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	1	248	2	5.37705	6.99981	8.62257	9.81265e-10	1e-12	1.12615e-7	2.25522e-10
chr19	53200703	53200803	17385459	0	+	0.43	(0.42,0.455]	chr19	1446237	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF818P	ENSG00000269001.2	ENST00000597550.5:ENST00000601072.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	128	2	6.53614	6.99491	7.45368	1.60905e-9	1e-12	1.7333e-7	2.25522e-10
chr14	74484498	74484587	14705330	0	-	0.52809	(0.49,0.53]	chr14	1151745	2	CDS	CDS:EXON_MRNA:INTRON	NPC2	ENSG00000119655.11	ENST00000434013.6:ENST00000541064.5:ENST00000555619.6:ENST00000238633.6:ENST00000554482.1:ENST00000553490.5:ENST00000556009.5:ENST00000557510.5:ENST00000555592.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	132	2	6.54473	6.992545	7.44036	3.49263e-9	1.06848e-12	3.39468e-7	2.39417e-10
chr6	122446850	122446927	7923749	0	-	0.493506	(0.49,0.53]	chr6	606810	2	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.44629	6.9911650000000005	7.53604	8.18066e-9	1e-12	7.15844e-7	2.25522e-10
chr9	87728675	87728766	10347562	0	+	0.472527	(0.455,0.49]	chr9	778725	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	211	2	6.42942	6.983935000000001	7.53845	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	128629950	128630046	4441409	0	-	0.510417	(0.49,0.53]	chr3	369013	1	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.05914	6.98058	7.90202	1.86307e-7	1e-12	1.07114e-5	2.25522e-10
chr16	75544360	75544458	16038245	0	-	0.530612	(0.53,0.59]	chr16	1288186	13	INTRON	INTRON	RP11-77K12.7:TMEM231:RP11-77K12.8	ENSG00000260092.1:ENSG00000205084.11:ENSG00000259992.1	ENST00000460606.1:ENST00000258173.11:ENST00000562410.5:ENST00000568377.5:ENST00000565067.5:ENST00000570006.5:ENST00000569294.1:ENST00000564576.1:ENST00000564489.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	250	2	6.61362	6.9799299999999995	7.34624	8.06644e-12	1e-12	1.56877e-9	2.25522e-10
chr4	41615243	41615341	4807632	0	+	0.357143	(0.33,0.36]	chr4	396707	12	INTRON	INTRON	LIMCH1	ENSG00000064042.18	ENST00000513024.5:ENST00000509638.5:ENST00000508501.5:ENST00000512946.5:ENST00000313860.11:ENST00000512632.5:ENST00000512820.5:ENST00000446625.6:ENST00000503057.6:ENST00000511496.5:ENST00000514096.5:ENST00000509277.5:ENST00000381753.8:ENST00000396595.7:ENST00000509454.5:ENST00000508466.1	protein_coding	protein_coding	protein_coding	protein_coding	5	360	2	4.72673	6.97985	9.23297	1.57874e-12	1e-12	3.68442e-10	2.25522e-10
chr11	2395868	2395919	11764969	0	+	0.568627	(0.53,0.59]	chr11	900174	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000263645.10:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	134	2	6.85434	6.97982	7.1053	7.63084e-10	8.57402e-11	9.03558e-8	1.18534e-8
chr9	18351431	18351531	10208995	0	+	0.36	(0.33,0.36]	chr9	767443	1871	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	6.60164	6.97582	7.35	1.09692e-9	1e-12	1.13492e-7	2.46312e-10
chrX	48526988	48527025	18691839	0	+	0.513514	(0.49,0.53]	chrX	1594138	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1:ENST00000466461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	128	2	6.6068	6.97234	7.33788	2.01858e-9	3.04134e-12	2.10919e-7	6.09111e-10
chr14	20801772	20801848	14518860	0	-	0.539474	(0.53,0.59]	chr14	1136981	2	CDS	CDS:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.28722	6.970414999999999	7.65361	8.04768e-8	1e-12	5.1468e-6	2.25522e-10
chr14	20801848	20801948	14518861	0	-	0.55	(0.53,0.59]	chr14	1136982	1	CDS_START	CDS_START:CDS:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.4819	6.9671400000000006	7.45238	1.75351e-8	3.1426e-12	1.37331e-6	6.23306e-10
chr6	147660702	147660760	7469862	0	+	0.534483	(0.53,0.59]	chr6	571304	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SAMD5:RP11-307P5.1	ENSG00000203727.4:ENSG00000227681.5	ENST00000566741.1:ENST00000427015.1:ENST00000432506.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	140	2	6.4819	6.9671400000000006	7.45238	1.75351e-8	3.1426e-12	1.37331e-6	6.23306e-10
chr1	155138181	155138281	483040	0	+	0.52	(0.49,0.53]	chr1	50531	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC50A1	ENSG00000169241.19	ENST00000484157.5:ENST00000490770.5:ENST00000475824.6:ENST00000368401.6:ENST00000622581.4:ENST00000490276.5:ENST00000303343.12:ENST00000368404.9:ENST00000650403.1:ENST00000368405.7:ENST00000488609.5:ENST00000484027.1:ENST00000479579.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	139	2	6.26566	6.96714	7.66862	3.67654e-8	1e-12	2.61023e-6	2.25522e-10
chr1	207768210	207768307	689952	0	+	0.278351	[0,0.29]	chr1	70087	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1:ENST00000636114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	839	2	6.3707	6.9558	7.5409	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	66065359	66065459	4865498	0	+	0.29	[0,0.29]	chr4	400368	487	INTRON	INTRON	RP11-25H12.1	ENSG00000249413.2	ENST00000508572.1	lncRNA	lncRNA	lncRNA	lncRNA	0	134	2	5.81819	6.955375	8.09256	2.80285e-7	1e-12	1.51316e-5	2.25522e-10
chr12	7931404	7931485	13193289	0	-	0.481481	(0.455,0.49]	chr12	1033515	3	CDS	CDS:UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1:ENST00000544936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	215	2	6.83354	6.95384	7.07414	2.99496e-11	1e-12	4.62749e-9	2.46312e-10
chr17	73224874	73224973	16673953	0	-	0.59596	(0.59,1]	chr17	1371851	118	INTRON	INTRON	FAM104A	ENSG00000133193.12	ENST00000405159.7:ENST00000403627.7:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	164	2	6.85097	6.95312	7.05527	1.32232e-7	1.8899e-8	7.98716e-6	1.34479e-6
chr19	38920810	38920891	17561722	0	-	0.419753	(0.39,0.42]	chr19	1475319	3	INTRON	INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	116	2	6.4098	6.952215	7.49463	1.13257e-8	1e-12	8.6123e-7	2.46312e-10
chr20	58826437	58826537	18024800	0	-	0.53	(0.49,0.53]	chr20	1527819	3	SS3_PROX	SS3_PROX:INTRON	GNAS-AS1	ENSG00000235590.7	ENST00000424094.6:ENST00000631314.2:ENST00000598163.1	lncRNA	lncRNA	lncRNA	lncRNA	1	226	2	5.61582	6.9474800000000005	8.27914	1.24354e-10	1e-12	1.82531e-8	2.25522e-10
chr1	40091328	40091399	954863	0	-	0.549296	(0.53,0.59]	chr1	100900	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2:ENST00000641548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	239	2	5.76261	6.94595	8.12929	5.96799e-11	1e-12	9.42217e-9	2.25522e-10
chrX	153715541	153715615	19273768	0	-	0.5	(0.49,0.53]	chrX	1637379	1	CDS	CDS:EXON_MRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1:ENST00000645802.1:ENST00000468947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	402	2	5.44692	6.94156	8.4362	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	43831467	43831565	18532580	0	-	0.55102	(0.53,0.59]	chr22	1582795	19	INTRON	INTRON	SULT4A1	ENSG00000130540.14	ENST00000330884.9:ENST00000422525.1:ENST00000432404.5:ENST00000475131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	145	2	6.25206	6.9392949999999995	7.62653	1.05059e-7	1e-12	6.55238e-6	2.25522e-10
chr6	49619178	49619270	7729745	0	-	0.467391	(0.455,0.49]	chr6	592980	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	801	2	6.6968	6.929819999999999	7.16284	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	66192129	66192213	18717535	0	+	0.547619	(0.53,0.59]	chrX	1596977	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	129	2	6.8066700000000004	6.925940000000001	7.04521	1.15766e-9	1.48757e-10	1.30002e-7	1.92788e-8
chr11	6616004	6616074	12249944	0	-	0.628571	(0.59,1]	chr11	946851	1	CDS	CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2:ENST00000436873.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	171	2	6.39622	6.9257	7.45518	2.12179e-6	1.07491e-9	8.29002e-5	1.11578e-7
chr22	20630512	20630612	18438186	0	-	0.42	(0.39,0.42]	chr22	1571764	23	INTRON	INTRON	SMPD4P1	ENSG00000223553.6	ENST00000443839.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	110	2	6.82516	6.924375	7.0235900000000004	5.56682e-11	4.16124e-11	8.8625e-9	6.25498e-9
chr19	44908708	44908796	17349675	0	+	0.715909	(0.59,1]	chr19	1439242	3	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000446996.5:ENST00000252486.9:ENST00000434152.5:ENST00000425718.1	protein_coding	protein_coding	protein_coding	protein_coding	1	384	2	5.04621	6.922545	8.79888	2.44158e-7	1e-12	1.20144e-5	2.46312e-10
chr12	112019823	112019894	13094228	0	+	0.535211	(0.53,0.59]	chr12	1021462	3	CDS	CDS:UTR5:EXON_MRNA:INTRON	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000552052.1:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	2	375	2	6.74679	6.919205	7.09162	8.98392e-11	1e-12	1.36373e-8	2.25522e-10
chr4	165340220	165340279	5206937	0	+	0.423729	(0.42,0.455]	chr4	420276	1	CDS	CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	2	255	2	5.55904	6.917595	8.27615	1.03906e-12	1e-12	2.46312e-10	2.33425e-10
chrX	23682395	23682460	18616030	0	+	0.369231	(0.36,0.39]	chrX	1589680	1	CDS	CDS:EXON_MRNA	PRDX4	ENSG00000123131.13	ENST00000379341.9:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.13186	6.915995	7.70013	2.76105e-8	1e-12	2.02995e-6	2.25522e-10
chr1	19237141	19237238	877328	0	-	0.505155	(0.49,0.53]	chr1	90489	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.18656	6.913375	7.64019	6.92844e-8	1e-12	4.51815e-6	2.25522e-10
chr11	75566623	75566710	12023328	0	+	0.701149	(0.59,1]	chr11	927007	3	CDS	CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	344	2	6.42581	6.908615	7.39142	1.7192e-9	1.47234e-11	1.69434e-7	2.68823e-9
chr18	23529390	23529482	16785107	0	+	0.445652	(0.42,0.455]	chr18	1384725	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RMC1	ENSG00000141452.10	ENST00000615148.4:ENST00000269221.8:ENST00000589215.5:ENST00000590868.5:ENST00000590870.5:ENST00000590387.1:ENST00000591367.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	125	2	6.31054	6.906425	7.50231	1.21087e-8	1e-12	1.00007e-6	2.25522e-10
chr9	87729657	87729735	10347574	0	+	0.461538	(0.455,0.49]	chr9	778731	1	CDS	CDS:UTR3:EXON_MRNA	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	123	2	6.34855	6.90103	7.45351	1.09383e-8	1e-12	9.21346e-7	2.25522e-10
chrX	104637706	104637806	18795728	0	+	0.43	(0.42,0.455]	chrX	1602490	703	INTRON	INTRON	IL1RAPL2	ENSG00000189108.13	ENST00000372582.6	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.54161	6.900740000000001	7.25987	4.74233e-9	1.06848e-12	4.06115e-7	2.61331e-10
chrX	47585498	47585582	18687912	0	+	0.547619	(0.53,0.59]	chrX	1593566	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000445623.1	protein_coding	protein_coding	protein_coding	protein_coding	3	517	2	6.49317	6.89865	7.30413	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	57388642	57388708	12394232	0	-	0.439394	(0.42,0.455]	chr11	958609	2	CDS	CDS:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	593	2	6.12132	6.8970199999999995	7.67272	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	37556330	37556414	142352	0	+	0.416667	(0.39,0.42]	chr1	17757	2	EXON_PSEUDO	EXON_PSEUDO	RP3-423B22.5	ENSG00000237749.4	ENST00000423216.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	111	2	6.59473	6.89477	7.19481	5.57275e-10	7.54108e-12	6.86723e-8	1.35198e-9
chr20	319613	319712	17870639	0	-	0.383838	(0.36,0.39]	chr20	1511878	29	EXON_LNCRNA	EXON_LNCRNA	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1:ENST00000414676.6	lncRNA	lncRNA	lncRNA	lncRNA	0	101	2	6.76422	6.887779999999999	7.01134	3.42424e-10	4.5608e-12	4.04831e-8	9.45067e-10
chr17	78171608	78171673	16367714	0	+	0.584615	(0.53,0.59]	chr17	1329562	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	290	2	5.79141	6.887145	7.98288	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62885176	62885266	11974457	0	+	0.5	(0.49,0.53]	chr11	918064	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	468	2	5.66436	6.88651	8.10866	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	85400337	85400437	15795321	0	+	0.46	(0.455,0.49]	chr16	1256986	410	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.0848	6.8838550000000005	7.68291	1.71103e-7	1e-12	8.87341e-6	2.46312e-10
chr8	30351968	30352065	9253452	0	+	0.443299	(0.42,0.455]	chr8	708964	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	111	2	6.79076	6.879505	6.96825	1.41511e-10	9.91354e-11	2.04978e-8	1.34998e-8
chr11	57389009	57389086	12394237	0	-	0.571429	(0.53,0.59]	chr11	958611	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1:ENST00000529411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	583	2	6.30345	6.877915	7.45238	3.1426e-12	1e-12	6.23306e-10	2.46312e-10
chr11	63750128	63750198	11976760	0	+	0.471429	(0.455,0.49]	chr11	918355	3	CDS	CDS:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	6.59571	6.87706	7.15841	1.2059e-9	1.29933e-11	1.33979e-7	2.19315e-9
chr1	161510840	161510899	500453	0	+	0.542373	(0.53,0.59]	chr1	54227	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	292	2	5.96844	6.875170000000001	7.7819	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	40680102	40680196	5950659	0	+	0.691489	(0.59,1]	chr5	466294	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PTGER4	ENSG00000171522.6	ENST00000302472.4:ENST00000514343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	156	2	6.69416	6.874715	7.05527	3.55514e-7	1.8899e-8	1.85736e-5	1.34479e-6
chr3	96617198	96617273	4316739	0	-	0.506667	(0.49,0.53]	chr3	360009	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.54473	6.86678	7.18883	3.49263e-9	1.35342e-11	3.39468e-7	2.27558e-9
chr20	32157793	32157881	17752552	0	+	0.602273	(0.59,1]	chr20	1498518	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.84288	6.865265	6.88765	1.04437e-7	7.98778e-8	6.52137e-6	4.61179e-6
chr22	30370303	30370403	18469920	0	-	0.56	(0.53,0.59]	chr22	1575903	16	UTR3	UTR3:EXON_MRNA	RNF215	ENSG00000099999.15	ENST00000332468.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	10	1618	2	6.18073	6.86198	7.54323	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	125612988	125613082	12194461	0	+	0.5	(0.49,0.53]	chr11	940778	1	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	966	2	6.71879	6.860625000000001	7.00246	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	581314	581406	17188318	0	+	0.586957	(0.53,0.59]	chr19	1410776	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	2020	2	6.32022	6.860605	7.40099	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	91351064	91351135	13817789	0	+	0.380282	(0.36,0.39]	chr13	1086072	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	MIR17HG:MIR17:MIR18A:MIR19A:MIR20A:MIR19B1:MIR92A1	ENSG00000215417.13:ENSG00000284536.1:ENSG00000283815.1:ENSG00000284204.1:ENSG00000283762.1:ENSG00000284375.1:ENSG00000283705.1	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000385012.1:ENST00000362310.3:ENST00000384878.1:ENST00000362279.1:ENST00000384829.1:ENST00000385233.3	miRNA	miRNA	miRNA:lncRNA	miRNA:retained_intron:lncRNA:primary_miRNA	0	120	2	6.07821	6.859255	7.6403	4.37694e-8	1e-12	3.03225e-6	2.25522e-10
chr1	116401553	116401604	423930	0	+	0.45098	(0.42,0.455]	chr1	41845	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1:ENST00000479960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	271	2	5.03262	6.855525	8.67843	1.56611e-10	1e-12	2.24824e-8	2.25522e-10
chr2	11507620	11507719	1633806	0	+	0.565657	(0.53,0.59]	chr2	162154	249	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.32155	6.85544	7.38933	6.18792e-8	5.81502e-12	4.08886e-6	1.07598e-9
chr7	149005976	149006056	9124758	0	-	0.65	(0.59,1]	chr7	696964	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000466592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	342	2	6.58949	6.85534	7.12119	2.23396e-8	2.06934e-12	1.68818e-6	4.32097e-10
chr9	87729576	87729657	10347573	0	+	0.469136	(0.455,0.49]	chr9	778730	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	205	2	6.60126	6.855155	7.10905	7.76257e-12	1e-12	1.51816e-9	2.25522e-10
chr22	49470906	49471006	18542573	0	-	0.43	(0.42,0.455]	chr22	1583944	293	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	123	2	6.0248100000000004	6.851315	7.67782	2.97136e-7	1e-12	1.42027e-5	2.46312e-10
chr12	31915619	31915719	13283716	0	-	0.42	(0.39,0.42]	chr12	1041545	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC02422	ENSG00000255760.2	ENST00000662662.1	lncRNA	lncRNA	lncRNA	lncRNA	1	213	2	6.8436	6.849435	6.85527	4.0786e-11	1e-12	6.71989e-9	2.25522e-10
chr4	145376075	145376164	5146234	0	+	0.41573	(0.39,0.42]	chr4	416391	7	EXON_PSEUDO	EXON_PSEUDO	RTN3P1	ENSG00000251333.3	ENST00000536295.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	192	2	5.52684	6.84816	8.16948	1.73069e-10	1e-12	2.45247e-8	2.25522e-10
chr15	94538713	94538812	15449228	0	-	0.363636	(0.36,0.39]	chr15	1221944	806	INTRON	INTRON	RP11-4F5.3	ENSG00000287950.1	ENST00000658115.1	lncRNA	lncRNA	lncRNA	lncRNA	0	112	2	6.23354	6.847625	7.46171	1.1274e-8	1e-12	9.43067e-7	2.25522e-10
chr18	32097877	32097977	16810554	0	+	0.34	(0.33,0.36]	chr18	1386583	46	INTRON	INTRON	RP11-53I6.2:RNF138	ENSG00000263917.1:ENSG00000134758.14	ENST00000583184.1:ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	0	96	2	6.31543	6.844765000000001	7.3741	1.40482e-8	1e-12	1.0408e-6	2.46312e-10
chr10	71819806	71819900	11563248	0	-	0.531915	(0.53,0.59]	chr10	879975	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000493143.1:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	1112	2	6.65055	6.844525	7.0385	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	87728326	87728396	10347558	0	+	0.485714	(0.455,0.49]	chr9	778723	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	219	2	6.82583	6.843745	6.86166	9.53212e-11	1e-12	1.44067e-8	2.25522e-10
chr13	113463788	113463887	14161394	0	-	0.424242	(0.42,0.455]	chr13	1107879	5	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000375403.6:ENST00000332592.7:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	6.4454	6.842015	7.23863	1.07351e-8	1.35281e-12	8.24229e-7	3.22195e-10
chr3	14080262	14080362	3319278	0	+	0.51	(0.49,0.53]	chr3	292020	144	INTRON	INTRON	TPRXL	ENSG00000180438.15	ENST00000532753.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	124	2	6.22666	6.841705	7.45675	5.03459e-8	1e-12	3.41647e-6	2.25522e-10
chr3	40761629	40761714	3431060	0	+	0.423529	(0.42,0.455]	chr3	298456	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-761N21.1:RP11-761N21.2	ENSG00000231873.2:ENSG00000234287.1	ENST00000665970.1:ENST00000457554.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	535	2	6.1747	6.836675	7.49865	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	50925237	50925337	12875782	0	+	0.62	(0.59,1]	chr12	1000522	2	CDS	CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000550502.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	151	2	6.76452	6.83508	6.90564	1.3389e-7	9.29604e-8	7.1964e-6	5.86968e-6
chrX	9568841	9568940	18567785	0	+	0.515152	(0.49,0.53]	chrX	1586476	79	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	193	2	6.1274	6.83172	7.53604	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	193655738	193655832	3982475	0	+	0.414894	(0.39,0.42]	chr3	335141	3	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000646544.1:ENST00000482865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	333	2	6.23132	6.830685	7.43005	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	18177215	18177292	17257708	0	+	0.623377	(0.59,1]	chr19	1425247	2	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	152	2	6.58672	6.82918	7.07164	6.86803e-7	1.68713e-8	3.23314e-5	1.21941e-6
chrX	70127362	70127462	19102304	0	-	0.32	(0.29,0.33]	chrX	1624930	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MTND4P31	ENSG00000235382.1	ENST00000425607.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	369	2	5.5914	6.826805	8.06221	9.43187e-11	1e-12	1.42862e-8	2.25522e-10
chr1	21857014	21857104	891007	0	-	0.588889	(0.53,0.59]	chr1	92416	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.21602	6.826445	7.43687	1.37682e-7	3.6614e-12	8.24248e-6	7.14029e-10
chr16	27694160	27694259	15613766	0	+	0.525253	(0.49,0.53]	chr16	1237938	68	INTRON	INTRON	KATNIP	ENSG00000047578.13	ENST00000261588.9:ENST00000567894.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	6.01403	6.819895	7.62576	2.61944e-7	1e-12	1.42854e-5	2.25522e-10
chr19	6532385	6532485	17213499	0	+	0.47	(0.455,0.49]	chr19	1415914	2	SS3_PROX	SS3_PROX:INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	1	183	2	6.34409	6.819545	7.295	3.26128e-12	1e-12	6.44282e-10	2.46312e-10
chr6	28488963	28489063	7651854	0	-	0.49	(0.455,0.49]	chr6	583052	2	SS5_PROX	SS5_PROX:INTRON	RP1-29K1.6	ENSG00000287804.1	ENST00000666335.1	lncRNA	lncRNA	lncRNA	lncRNA	19	2044	2	6.80792	6.81859	6.82926	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	122231653	122231753	12632585	0	-	0.45	(0.42,0.455]	chr11	980560	274	INTRON	INTRON	MIR100HG	ENSG00000255248.9	ENST00000660311.1:ENST00000649216.1:ENST00000662950.1:ENST00000670396.1:ENST00000649293.1:ENST00000648734.1:ENST00000655138.1:ENST00000661848.1:ENST00000669472.1:ENST00000655814.1:ENST00000637700.1:ENST00000654629.1:ENST00000658183.1:ENST00000533109.6:ENST00000670951.1:ENST00000660329.1:ENST00000527474.5:ENST00000661695.1:ENST00000529733.5	lncRNA	lncRNA	lncRNA	lncRNA	0	113	2	6.35067	6.81463	7.27859	8.53658e-9	4.69058e-12	7.38823e-7	8.8938e-10
chr8	108228328	108228391	10002572	0	-	0.460317	(0.455,0.49]	chr8	754193	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000677746.1:ENST00000523646.1:ENST00000676931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	184	2	6.11175	6.80802	7.50429	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	119097451	119097551	12626622	0	-	0.41	(0.39,0.42]	chr11	979856	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	216	2	5.57432	6.807495	8.04067	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	47585314	47585414	18687910	0	+	0.68	(0.59,1]	chrX	1593565	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000445623.1	protein_coding	protein_coding	protein_coding	protein_coding	1	312	2	5.35444	6.80583	8.25722	4.12823e-8	2.07112e-12	2.89549e-6	4.32163e-10
chr4	164189779	164189877	5204348	0	+	0.479592	(0.455,0.49]	chr4	420030	16	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	608	2	6.50446	6.803325	7.10219	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	76635661	76635760	14712547	0	-	0.424242	(0.42,0.455]	chr14	1152725	1	INTRON	INTRON	RP11-187O7.3	ENSG00000259124.1	ENST00000554926.1	lncRNA	lncRNA	lncRNA	lncRNA	0	119	2	6.09117	6.7887249999999995	7.48628	7.60033e-8	1e-12	4.89668e-6	2.25522e-10
chr11	74969631	74969699	12021482	0	+	0.470588	(0.455,0.49]	chr11	926800	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	188	2	5.57478	6.788345	8.00191	1.39255e-10	1e-12	2.0185e-8	2.25522e-10
chr17	44351362	44351460	16234923	0	+	0.602041	(0.59,1]	chr17	1314577	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000589923.1:ENST00000585348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	302	2	5.45426	6.788295	8.12233	2.06789e-8	6.16152e-12	1.58157e-6	1.12783e-9
chr9	100018255	100018313	10772896	0	-	0.431034	(0.42,0.455]	chr9	815451	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.13779	6.787445	7.4371	5.19796e-8	1e-12	3.50456e-6	2.25522e-10
chr11	62628768	62628849	12409736	0	-	0.530864	(0.53,0.59]	chr11	961253	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	570	2	6.31162	6.78562	7.25962	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	73373009	73373107	7795156	0	-	0.408163	(0.39,0.42]	chr6	597079	33	INTRON	INTRON	OOEP	ENSG00000203907.10	ENST00000370363.5:ENST00000441145.1	protein_coding	protein_coding	protein_coding	protein_coding	15	1433	2	6.16678	6.78365	7.40052	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	136670601	136670686	10512532	0	+	0.529412	(0.49,0.53]	chr9	796292	1	EXON_SMALL	EXON_SMALL:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	EGFL7:MIR126	ENSG00000172889.16:ENSG00000199161.1	ENST00000371699.5:ENST00000308874.12:ENST00000406555.7:ENST00000492002.1:ENST00000371698.3:ENST00000362291.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:processed_transcript:primary_miRNA	0	144	2	5.65129	6.776655	7.90202	3.38975e-6	1e-12	1.23071e-4	2.25522e-10
chr14	103873784	103873884	14797072	0	-	0.47	(0.455,0.49]	chr14	1159798	34	INTRON	INTRON	CTD-2134A5.4	ENSG00000258534.1	ENST00000555967.1	lncRNA	lncRNA	lncRNA	lncRNA	0	117	2	6.09672	6.7751149999999996	7.45351	8.84067e-8	1e-12	5.61099e-6	2.25522e-10
chr2	148881845	148881944	2932484	0	-	0.353535	(0.33,0.36]	chr2	259979	16	INTRON	INTRON	KIF5C-AS1	ENSG00000231079.7	ENST00000601658.5:ENST00000446781.3	lncRNA	lncRNA	lncRNA	lncRNA	34	2847	2	5.95343	6.773575	7.59372	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	88538564	88538663	15433765	0	-	0.494949	(0.49,0.53]	chr15	1220300	18	INTRON	INTRON	RP11-97O12.7:DET1	ENSG00000173867.10:ENSG00000140543.15	ENST00000649547.1:ENST00000557842.6:ENST00000268148.13:ENST00000557837.1:ENST00000564406.5:ENST00000558413.1:ENST00000559656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	214	2	5.21766	6.771085	8.32451	5.37161e-9	1e-12	4.92601e-7	2.25522e-10
chr12	49759220	49759270	12869231	0	+	0.5	(0.49,0.53]	chr12	999632	1	CDS	CDS:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000547013.1:ENST00000550040.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	444	2	6.65133	6.77046	6.88959	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	25284665	25284759	103585	0	+	0.574468	(0.53,0.59]	chr1	12132	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	6.3818	6.765945	7.15009	4.09818e-8	5.21796e-11	2.59819e-6	8.36447e-9
chr4	161895814	161895914	5761281	0	-	0.45	(0.42,0.455]	chr4	454673	1194	INTRON	INTRON	FSTL5	ENSG00000168843.14	ENST00000306100.10:ENST00000379164.8:ENST00000427802.2	protein_coding	protein_coding	protein_coding	protein_coding	1	213	2	6.73119	6.764865	6.79854	2.53502e-10	1e-12	3.43829e-8	2.25522e-10
chrX	315499	315599	18924683	0	-	0.5	(0.49,0.53]	chrX	1612795	2	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	4	545	2	6.42986	6.764799999999999	7.09974	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	9568241	9568341	18567779	0	+	0.49	(0.455,0.49]	chrX	1586476	73	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	174	2	6.10913	6.764445	7.41976	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	46428851	46428950	12381380	0	-	0.535354	(0.53,0.59]	chr11	955794	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	AMBRA1:RP11-425L10.1	ENSG00000110497.15:ENSG00000244313.3	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000467930.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	362	2	6.72333	6.760555	6.79778	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	300413	300511	18549166	0	+	0.295918	(0.29,0.33]	chrX	1585413	12	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	14	952	2	6.57961	6.7561350000000004	6.93266	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	22929679	22929752	14175260	0	+	0.534247	(0.53,0.59]	chr14	1110498	2	EXON_LNCRNA	EXON_LNCRNA	RP11-298I3.1	ENSG00000257285.6	ENST00000668190.1:ENST00000548819.5:ENST00000548322.1	lncRNA	lncRNA	lncRNA	lncRNA	44	5575	2	6.62511	6.7544	6.88369	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	32155102	32155186	17752524	0	+	0.488095	(0.455,0.49]	chr20	1498512	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	6.46172	6.75045	7.03918	8.23018e-9	1.59888e-11	6.55711e-7	2.88396e-9
chr14	49583666	49583675	14613957	0	-	0.333333	(0.33,0.36]	chr14	1144048	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	6.38277	6.748885	7.115	2.2105e-9	6.9279e-12	2.27943e-7	1.25364e-9
chr9	132475417	132475517	10500780	0	+	0.58	(0.53,0.59]	chr9	793850	539	INTRON	INTRON	CFAP77	ENSG00000188523.9	ENST00000393215.7:ENST00000393216.3:ENST00000343036.6	protein_coding	protein_coding	protein_coding	protein_coding	0	179	2	5.27087	6.746775	8.22268	5.9416e-5	1e-12	0.00130151	2.25522e-10
chr11	125620010	125620068	12194539	0	+	0.482759	(0.455,0.49]	chr11	940800	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	338	2	6.31777	6.74673	7.17569	3.86147e-12	1e-12	8.08172e-10	2.25522e-10
chr1	224190226	224190319	728459	0	+	0.376344	(0.36,0.39]	chr1	73579	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000498813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	6.32851	6.74161	7.15471	4.75446e-9	7.24432e-12	4.42746e-7	1.30346e-9
chr9	100020615	100020673	10772921	0	-	0.37931	(0.36,0.39]	chr9	815457	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	6.32851	6.74161	7.15471	4.75446e-9	7.24432e-12	4.42746e-7	1.30346e-9
chr19	38920991	38921091	17561724	0	-	0.42	(0.39,0.42]	chr19	1475320	2	SS5_PROX	SS5_PROX:INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	106	2	5.96535	6.739495	7.51364	3.80804e-7	1e-12	1.7481e-5	2.46312e-10
chr22	21789802	21789901	18442656	0	-	0.262626	[0,0.29]	chr22	1572534	6	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	272	2	5.11103	6.739275000000001	8.36752	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	27050822	27050922	1690773	0	+	0.44	(0.42,0.455]	chr2	165374	79	INTRON	INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5	protein_coding	protein_coding	protein_coding	protein_coding	653	62364	2	6.34915	6.735955000000001	7.12276	2.15161e-12	1e-12	4.84282e-10	2.25522e-10
chr5	8457966	8458066	5871547	0	+	0.69	(0.59,1]	chr5	461641	2	SS5_PROX	SS5_PROX:INTRON	MIR4458HG	ENSG00000247516.8	ENST00000667556.1:ENST00000605918.1:ENST00000669668.1:ENST00000502001.2:ENST00000664641.1:ENST00000606459.1:ENST00000670196.1:ENST00000652260.1	lncRNA	lncRNA	lncRNA	lncRNA	0	175	2	5.72839	6.732945	7.7375	7.24021e-5	1.27482e-10	0.0015254	1.68088e-8
chr6	122453838	122453907	7923825	0	-	0.376812	(0.36,0.39]	chr6	606830	2	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	2	235	2	6.3114	6.72961	7.14782	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	42370277	42370377	5395152	0	-	0.52	(0.49,0.53]	chr4	432236	170	INTRON	INTRON	RP11-63A11.1	ENSG00000250781.2	ENST00000503321.1:ENST00000508911.1:ENST00000515392.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	6.47986	6.728855	6.97785	6.13551e-9	1.04183e-10	5.54301e-7	1.40718e-8
chr6	49618067	49618142	7729732	0	-	0.306667	(0.29,0.33]	chr6	592974	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	978	2	6.51298	6.72803	6.94308	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	869467	869565	5276277	0	-	0.479592	(0.455,0.49]	chr4	424387	9	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	100	2	6.64816	6.727405	6.80665	1.62448e-9	1.63335e-10	1.61468e-7	2.33035e-8
chr10	60793975	60794072	11063689	0	+	0.237113	[0,0.29]	chr10	841962	1	UTR3	UTR3:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	5.81942	6.726495	7.63357	8.73135e-12	1e-12	1.69178e-9	2.25522e-10
chr3	193613026	193613125	3982007	0	+	0.30303	(0.29,0.33]	chr3	335002	91	INTRON	INTRON	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000419435.5:ENST00000645553.1:ENST00000642593.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	6.4552	6.726485	6.99777	9.01107e-10	1.5475e-11	1.04915e-7	2.57952e-9
chr17	67224727	67224805	16328256	0	+	0.5	(0.49,0.53]	chr17	1324677	1	EXON_PSEUDO	EXON_PSEUDO:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-401F2.4:RPL36AP48	ENSG00000264421.1:ENSG00000213180.4	ENST00000583452.1:ENST00000485521.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	113	2	6.14533	6.72368	7.30203	9.58343e-8	4.37028e-12	6.01659e-6	8.36835e-10
chrX	101163559	101163658	18785811	0	+	0.333333	(0.33,0.36]	chrX	1601263	7	UTR3	UTR3:EXON_MRNA	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000682095.1:ENST00000372927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	6.16547	6.720330000000001	7.27519	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	160349577	160349670	496708	0	+	0.548387	(0.53,0.59]	chr1	53450	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000467837.5:ENST00000491332.1:ENST00000459963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	117	2	6.25206	6.71689	7.18172	1.05059e-7	4.21413e-11	6.55238e-6	6.31002e-9
chrX	315886	315974	18924687	0	-	0.477273	(0.455,0.49]	chrX	1612796	2	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	175	2	5.58592	6.713875	7.84183	1.80441e-10	1e-12	2.29002e-8	2.46312e-10
chr12	865009	865109	12681203	0	+	0.32	(0.29,0.33]	chr12	984061	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	6.62009	6.711600000000001	6.80311	6.66423e-10	2.30598e-11	7.28393e-8	4.03736e-9
chr9	133124239	133124339	10879220	0	-	0.5	(0.49,0.53]	chr9	825573	31	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	6.21805	6.7075	7.19695	7.46967e-8	7.20801e-12	4.33833e-6	1.41633e-9
chr12	7932986	7933063	13193307	0	-	0.545455	(0.53,0.59]	chr12	1033521	1	CDS	CDS:UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1:ENST00000544936.1:ENST00000476634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	197	2	5.71954	6.702915	7.68629	9.39103e-11	1e-12	1.28737e-8	2.46312e-10
chr1	54871525	54871613	1030769	0	-	0.590909	(0.59,1]	chr1	107013	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	151	2	6.05296	6.702365	7.35177	1.41714e-5	2.29702e-9	4.01358e-4	2.17474e-7
chr13	67267610	67267706	14060016	0	-	0.5	(0.49,0.53]	chr13	1101789	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP53	ENSG00000214263.2	ENST00000433498.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	226	2	4.88549	6.701040000000001	8.51659	9.40767e-8	1e-12	5.92227e-6	2.25522e-10
chr1	21831035	21831090	890693	0	-	0.6	(0.59,1]	chr1	92242	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	5.94695	6.69861	7.45027	1.71208e-5	2.28008e-9	4.31898e-4	2.33913e-7
chr9	91905581	91905681	10734856	0	-	0.42	(0.39,0.42]	chr9	812027	185	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	6.51052	6.69764	6.88476	4.78431e-9	3.00047e-11	4.08907e-7	5.13281e-9
chr1	161000145	161000212	1331450	0	-	0.522388	(0.49,0.53]	chr1	136447	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	188	2	6.36836	6.697045	7.02573	3.98821e-11	1e-12	6.62185e-9	2.25522e-10
chr1	161513894	161513932	500487	0	+	0.5	(0.49,0.53]	chr1	54239	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5:ENST00000537821.2:ENST00000461298.1:ENST00000459885.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	106	2	6.30364	6.695415	7.08719	2.6977e-8	3.65634e-11	1.98827e-6	5.56073e-9
chr21	25362682	25362781	18080036	0	+	0.515152	(0.49,0.53]	chr21	1532967	7	EXON_LNCRNA	EXON_LNCRNA	RPL13AP7	ENSG00000213885.4	ENST00000672784.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	115	2	5.96747	6.687234999999999	7.407	3.70439e-7	1.50335e-12	1.92378e-5	3.22765e-10
chr21	34993748	34993848	18228809	0	-	0.51	(0.49,0.53]	chr21	1546951	1004	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	6.21805	6.68703	7.15601	7.46967e-8	1.09075e-11	4.33833e-6	2.06366e-9
chr16	68944707	68944807	15719922	0	+	0.34	(0.33,0.36]	chr16	1251692	71	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	5.35727	6.68639	8.01551	9.85137e-10	1e-12	1.12936e-7	2.25522e-10
chr15	74411948	74412012	15374447	0	-	0.59375	(0.59,1]	chr15	1215159	2	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.20602	6.686064999999999	7.16611	6.20993e-6	8.70428e-9	2.03021e-4	6.87362e-7
chr1	42929683	42929774	967012	0	-	0.571429	(0.53,0.59]	chr1	101880	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000669445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	549	2	5.6626	6.683695	7.70479	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	37849420	37849449	18364378	0	+	0.724138	(0.59,1]	chr22	1562138	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	142	2	6.20602	6.678405	7.15079	6.20993e-6	9.69784e-9	2.03021e-4	7.56913e-7
chr11	75571915	75571983	12023389	0	+	0.632353	(0.59,1]	chr11	927025	3	CDS	CDS:UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000533449.6:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	357	2	5.17637	6.676455	8.17654	1.76798e-9	1.0114e-11	1.738e-7	1.92751e-9
chr1	112917177	112917273	1232349	0	-	0.5625	(0.53,0.59]	chr1	120462	1	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	772	2	6.20089	6.672515000000001	7.14414	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	54032249	54032305	1027176	0	-	0.339286	(0.33,0.36]	chr1	106600	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000470395.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.94159	6.672105	7.40262	1.1372e-7	1e-12	7.00677e-6	2.25522e-10
chr5	151368451	151368550	6917937	0	-	0.444444	(0.42,0.455]	chr5	529933	14	INTRON	INTRON	CTB-23I7.1	ENSG00000253897.2	ENST00000647906.1:ENST00000517788.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	99	2	6.35067	6.67091	6.99115	8.53658e-9	7.96748e-11	7.38823e-7	1.1159e-8
chr19	2689190	2689290	17425221	0	-	0.3	(0.29,0.33]	chr19	1453622	56	INTRON	INTRON	GNG7	ENSG00000176533.13	ENST00000382159.8	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	6.12506	6.66814	7.21122	2.06649e-8	1.59261e-12	1.58157e-6	3.4088e-10
chr20	37213759	37213812	17777712	0	+	0.301887	(0.29,0.33]	chr20	1502042	1	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	6.41863	6.66662	6.91461	6.59506e-12	1e-12	1.31193e-9	2.25522e-10
chr10	71828943	71829010	11563348	0	-	0.552239	(0.53,0.59]	chr10	880009	2	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	4	599	2	6.20307	6.662245	7.12142	1e-12	1e-12	2.46312e-10	2.25522e-10
chr18	2292181	2292281	16980887	0	-	0.48	(0.455,0.49]	chr18	1396353	338	INTRON	INTRON	RP11-161I6.2	ENSG00000263745.7	ENST00000639316.2	lncRNA	lncRNA	lncRNA	lncRNA	9	997	2	6.02274	6.66102	7.2993	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	21447726	21447824	18302341	0	+	0.510204	(0.49,0.53]	chr22	1554129	11	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	8	802	2	5.90763	6.659605	7.41158	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	43116493	43116592	15244707	0	-	0.474747	(0.455,0.49]	chr15	1201033	1	INTRON	INTRON	RP11-473C18.6	ENSG00000285080.1	ENST00000570199.2	lncRNA	lncRNA	lncRNA	lncRNA	1	163	2	5.72803	6.654585000000001	7.58114	2.88216e-11	1e-12	4.9507e-9	2.25522e-10
chrX	300315	300413	18549165	0	+	0.408163	(0.39,0.42]	chrX	1585413	11	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	3	228	2	5.18137	6.649285000000001	8.1172	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	21829456	21829530	890675	0	-	0.662162	(0.59,1]	chr1	92236	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	275	2	5.95792	6.648115	7.33831	2.53347e-9	5.37208e-10	2.36966e-7	6.64741e-8
chr14	89792668	89792768	14755078	0	-	0.44	(0.42,0.455]	chr14	1155314	544	INTRON	INTRON	RP11-33N16.3	ENSG00000259053.1	ENST00000555070.1	lncRNA	lncRNA	lncRNA	lncRNA	0	125	2	5.58564	6.647735	7.70983	3.24669e-6	1e-12	1.18495e-4	2.25522e-10
chrX	9568641	9568741	18567783	0	+	0.5	(0.49,0.53]	chrX	1586476	77	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	170	2	5.99203	6.64703	7.30203	4.37028e-12	2.61291e-12	8.36835e-10	5.75703e-10
chr17	38760430	38760507	16217851	0	+	0.519481	(0.49,0.53]	chr17	1310750	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4:ENST00000614132.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	173	2	6.03346	6.6448599999999995	7.25626	3.93363e-12	2.29616e-12	8.20809e-10	4.72898e-10
chr6	49612465	49612534	7729673	0	-	0.521739	(0.49,0.53]	chr6	592956	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000646874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	1065	2	6.63298	6.643545	6.65411	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	146240228	146240328	6279822	0	+	0.42	(0.39,0.42]	chr5	489413	24	INTRON	INTRON	RP11-449H3.3:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	193	2	5.97122	6.64115	7.31108	2.28584e-12	1e-12	4.71328e-10	2.46312e-10
chrX	79361328	79361403	19130516	0	-	0.466667	(0.455,0.49]	chrX	1627053	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	6.18563	6.64065	7.09567	4.30535e-8	2.42271e-11	2.9886e-6	3.83676e-9
chr14	24254147	24254247	14534775	0	-	0.56	(0.53,0.59]	chr14	1139844	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TGM1	ENSG00000092295.12	ENST00000206765.11:ENST00000544573.5:ENST00000559669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.06212	6.64029	7.21846	4.23179e-7	2.98389e-11	2.1371e-5	4.62267e-9
chr19	20362574	20362674	17508283	0	-	0.61	(0.59,1]	chr19	1469522	211	INTRON	INTRON	ZNF826P	ENSG00000231205.11	ENST00000542380.5:ENST00000541160.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	1603	2	5.23513	6.63785	8.04057	8.66118e-12	1e-12	1.67975e-9	2.25522e-10
chr7	133035827	133035907	9078015	0	-	0.5875	(0.53,0.59]	chr7	693068	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	CHCHD3:RP11-371A22.1	ENSG00000106554.13:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000634247.1:ENST00000457942.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	195	2	6.22332	6.6373	7.05128	1.30216e-10	1e-12	1.90274e-8	2.25522e-10
chr20	1278155	1278255	17646620	0	+	0.48	(0.455,0.49]	chr20	1491668	110	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	6.35861	6.63663	6.91465	1.95116e-8	5.63631e-11	1.37715e-6	8.93906e-9
chr1	110894959	110895055	405590	0	+	0.520833	(0.49,0.53]	chr1	39823	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	293	2	6.58169	6.63621	6.69073	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	46782382	46782422	17595534	0	-	0.525	(0.49,0.53]	chr19	1481406	1	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	257	2	5.32168	6.635405	7.94913	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	126820909	126820984	6202689	0	+	0.52	(0.49,0.53]	chr5	483209	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	6.51266	6.635015	6.75737	4.62014e-9	7.98962e-10	4.31971e-7	8.57937e-8
chr1	160351221	160351296	496727	0	+	0.48	(0.455,0.49]	chr1	53460	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000459963.5:ENST00000424645.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	118	2	5.67339	6.63486	7.59633	2.05982e-6	1e-12	8.10246e-5	2.25522e-10
chr19	6532285	6532385	17213498	0	+	0.51	(0.49,0.53]	chr19	1415914	1	SS3_PROX	SS3_PROX:INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	5.74557	6.63326	7.52095	4.33673e-11	1e-12	6.47837e-9	2.46312e-10
chr10	19517814	19517914	10952099	0	+	0.47	(0.455,0.49]	chr10	833825	188	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7:ENST00000492202.1:ENST00000377265.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	5.95213	6.632815000000001	7.3135	2.72823e-7	2.69584e-12	1.4763e-5	5.44604e-10
chr9	133123839	133123939	10879216	0	-	0.45	(0.42,0.455]	chr9	825573	27	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	6.06853	6.63187	7.19521	2.14495e-7	2.16815e-12	1.07721e-5	4.86433e-10
chr3	129172667	129172766	4443921	0	-	0.474747	(0.455,0.49]	chr3	369332	5	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	6.42816	6.63129	6.83442	1.09292e-8	1.24566e-10	8.34724e-7	1.82586e-8
chr6	97145026	97145124	7854155	0	-	0.357143	(0.33,0.36]	chr6	601416	30	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	6.23404	6.629125	7.02421	2.79464e-8	2.59581e-12	1.8758e-6	5.73145e-10
chr14	102234153	102234231	14792828	0	-	0.551282	(0.53,0.59]	chr14	1159132	1	SS3_PROX	SS3_PROX:INTRON	MOK	ENSG00000080823.23	ENST00000559138.5:ENST00000559838.5:ENST00000557823.5:ENST00000561150.5:ENST00000521766.5:ENST00000523485.5:ENST00000517966.5:ENST00000519569.5:ENST00000361847.7:ENST00000518686.5:ENST00000522874.5:ENST00000524370.5:ENST00000523231.5:ENST00000522867.1:ENST00000520266.5:ENST00000519058.5:ENST00000524214.5:ENST00000522534.5:ENST00000522537.5:ENST00000519477.5:ENST00000520252.5:ENST00000524120.5:ENST00000521388.5:ENST00000562292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	1443	2	5.13741	6.6289549999999995	8.1205	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	119098402	119098487	12626633	0	-	0.423529	(0.42,0.455]	chr11	979860	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	166	2	5.4407	6.628475	7.81625	4.8168e-10	1e-12	6.04991e-8	2.25522e-10
chr11	1491777	1491877	12229826	0	-	0.41	(0.39,0.42]	chr11	944267	51	INTRON	INTRON	MOB2	ENSG00000182208.14	ENST00000526462.5:ENST00000529380.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	0	94	2	6.01191	6.628265000000001	7.24462	2.69432e-7	1e-12	1.30302e-5	2.46312e-10
chr6	26330358	26330454	7647445	0	-	0.4375	(0.42,0.455]	chr6	582609	9	INTRON	INTRON	RP1-45P21.8	ENSG00000287050.1	ENST00000655687.1	lncRNA	lncRNA	lncRNA	lncRNA	24	2324	2	6.20778	6.6266300000000005	7.04548	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	101274231	101274329	2814113	0	-	0.520408	(0.49,0.53]	chr2	251262	5	INTRON	INTRON	RNF149	ENSG00000163162.9	ENST00000424632.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	259	2	5.23303	6.626605	8.02018	1.18716e-12	1e-12	2.61973e-10	2.46312e-10
chr12	7931324	7931404	13193288	0	-	0.5125	(0.49,0.53]	chr12	1033515	2	CDS	CDS:UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1:ENST00000544936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	231	2	4.95304	6.626175	8.29931	5.49934e-10	1e-12	6.17835e-8	2.46312e-10
chr19	35654570	35654620	17306048	0	+	0.52	(0.49,0.53]	chr19	1431263	1	CDS	CDS:EXON_MRNA:INTRON	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000652250.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	6.5761	6.625895	6.67569	2.65032e-9	1.65563e-9	2.6743e-7	1.6405e-7
chr20	33581454	33581554	17759954	0	+	0.38	(0.36,0.39]	chr20	1499852	68	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6:ENST00000344201.7:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	6.54175	6.6244	6.70705	6.23366e-10	5.85361e-10	7.57002e-8	6.50388e-8
chr21	27421023	27421122	18195994	0	-	0.313131	(0.29,0.33]	chr21	1544320	1	INTRON	INTRON	AP001604.3	ENSG00000231236.2	ENST00000420186.2	lncRNA	lncRNA	lncRNA	lncRNA	1	142	2	6.40489	6.623065	6.84124	1.50921e-11	1e-12	2.74117e-9	2.25522e-10
chr19	54794870	54794969	17393313	0	+	0.414141	(0.39,0.42]	chr19	1447978	42	INTRON	INTRON	CTB-61M7.1	ENSG00000215765.3	ENST00000400864.3	lncRNA	lncRNA	lncRNA	lncRNA	0	151	2	5.10761	6.622975	8.13834	5.12039e-5	1e-12	0.00114668	2.25522e-10
chr11	119100703	119100778	12626658	0	-	0.52	(0.49,0.53]	chr11	979868	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1:ENST00000460183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	97	2	6.43215	6.618665	6.80518	1.33302e-8	3.30206e-10	9.93516e-7	4.346e-8
chr11	22901767	22901866	11861866	0	+	0.393939	(0.39,0.42]	chr11	907448	165	INTRON	INTRON	RP11-17A1.3	ENSG00000246225.7	ENST00000528701.6:ENST00000499625.1	lncRNA	lncRNA	lncRNA	lncRNA	0	116	2	5.60958	6.61852	7.62746	2.11003e-6	1e-12	8.25026e-5	2.25522e-10
chr4	79122295	79122394	4914584	0	+	0.636364	(0.59,1]	chr4	404440	353	INTRON	INTRON	LINC01088	ENSG00000249307.7	ENST00000671503.1:ENST00000509088.6:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5:ENST00000513153.5	lncRNA	lncRNA	lncRNA	lncRNA	0	146	2	5.88171	6.61674	7.35177	3.41939e-5	2.29702e-9	8.3505e-4	2.17474e-7
chr9	133123739	133123839	10879215	0	-	0.48	(0.455,0.49]	chr9	825573	26	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.74656	6.6167300000000004	7.4869	1.95355e-6	1e-12	7.00948e-5	2.46312e-10
chr19	48389631	48389711	17601738	0	-	0.4625	(0.455,0.49]	chr19	1482728	2	CDS	CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5:ENST00000600980.1:ENST00000599084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	388	2	6.39731	6.61543	6.83355	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	18795522	18795581	15877105	0	-	0.38983	(0.36,0.39]	chr16	1269310	2	CDS	CDS:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	237	2	5.71381	6.613865	7.51392	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62885266	62885357	11974458	0	+	0.494505	(0.49,0.53]	chr11	918064	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	463	2	5.55102	6.60613	7.66124	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	146140859	146140959	6891326	0	-	0.3	(0.29,0.33]	chr5	527511	7	EXON_MRNA	EXON_MRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	6.44368	6.603809999999999	6.76394	3.4237e-9	3.54888e-11	3.07456e-7	5.97795e-9
chr2	74462428	74462524	2742892	0	-	0.5625	(0.53,0.59]	chr2	244411	12	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	5.93486	6.60337	7.27188	1.0295e-6	1.79882e-11	4.52516e-5	2.95052e-9
chr7	149569295	149569395	9126285	0	-	0.33	(0.29,0.33]	chr7	697184	53	INTRON	INTRON	ZNF767P	ENSG00000133624.13	ENST00000463567.5:ENST00000472212.5:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	30	2003	2	5.59606	6.603275	7.61049	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	2394971	2395046	11764958	0	+	0.586667	(0.53,0.59]	chr11	900170	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000493525.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000530239.1:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	513	2	5.64075	6.60145	7.56215	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	82377203	82377301	4927072	0	+	0.489796	(0.455,0.49]	chr4	404827	21	INTRON	INTRON	HNRNPD-DT	ENSG00000272677.1	ENST00000609575.1	lncRNA	lncRNA	lncRNA	lncRNA	5	646	2	5.491	6.600809999999999	7.71062	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	100734425	100734518	14489605	0	+	0.623656	(0.59,1]	chr14	1132123	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	3	412	2	4.76972	6.597770000000001	8.42582	5.36516e-9	1e-12	4.92588e-7	2.25522e-10
chr3	128622327	128622409	4441326	0	-	0.536585	(0.53,0.59]	chr3	368991	3	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	6.51194	6.592995	6.67405	1.37625e-8	3.84457e-9	1.11679e-6	3.39055e-7
chr11	63752506	63752575	11976786	0	+	0.449275	(0.42,0.455]	chr11	918361	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	383	2	6.36668	6.590535	6.81439	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	86949757	86949846	5516771	0	-	0.606742	(0.59,1]	chr4	441809	2	EXON_PSEUDO	EXON_PSEUDO	TECRP1	ENSG00000235043.3	ENST00000513307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	128	2	6.37053	6.58738	6.8042299999999996	2.4605e-6	1.03163e-7	9.40752e-5	5.72568e-6
chr9	87728257	87728326	10347557	0	+	0.492754	(0.49,0.53]	chr9	778723	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	185	2	6.47897	6.5870750000000005	6.69518	9.10937e-10	1e-12	1.0553e-7	2.25522e-10
chr17	44352698	44352798	16234941	0	+	0.67	(0.59,1]	chr17	1314589	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.23477	6.5849899999999995	6.93521	5.29741e-6	4.30026e-8	1.78149e-4	2.69981e-6
chr11	62629193	62629244	12409742	0	-	0.54902	(0.53,0.59]	chr11	961257	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	417	2	6.32466	6.58418	6.8437	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	98819358	98819458	10381768	0	+	0.6	(0.59,1]	chr9	781948	109	INTRON	INTRON	GALNT12	ENSG00000119514.7	ENST00000375011.4:ENST00000610463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	356	2	4.70308	6.5833	8.46352	7.98278e-8	1e-12	5.11469e-6	2.25522e-10
chr1	150967066	150967134	1291381	0	-	0.529412	(0.49,0.53]	chr1	128682	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000559660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	169	2	6.11793	6.583105	7.04828	3.19488e-11	1e-12	5.43423e-9	2.25522e-10
chr19	40371672	40371739	17328668	0	+	0.567164	(0.53,0.59]	chr19	1435567	1	CDS	CDS:UTR3:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000492243.1:ENST00000475983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	6.5702	6.58131	6.59242	8.55645e-9	7.57932e-9	7.38823e-7	6.12104e-7
chr6	100546480	100546580	7861089	0	-	0.37	(0.36,0.39]	chr6	602161	57	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	6.08917	6.57833	7.06749	2.43428e-12	1e-12	5.4123e-10	2.25522e-10
chr5	10708271	10708371	6447831	0	-	0.47	(0.455,0.49]	chr5	502271	243	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	6.42359	6.5783249999999995	6.73306	5.69021e-9	7.56124e-10	5.19009e-7	8.17978e-8
chr5	10407151	10407202	5875254	0	+	0.372549	(0.36,0.39]	chr5	461995	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	6.02248	6.577825	7.13317	7.00159e-8	9.03866e-12	4.55874e-6	1.58863e-9
chr4	869076	869174	5276273	0	-	0.479592	(0.455,0.49]	chr4	424387	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	90	2	6.42816	6.57408	6.72	1.09292e-8	3.76113e-10	8.34724e-7	4.87344e-8
chr13	113463689	113463788	14161393	0	-	0.393939	(0.39,0.42]	chr13	1107879	4	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000375403.6:ENST00000332592.7:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	6.48346	6.573824999999999	6.66419	1.61258e-9	1.22831e-9	1.73353e-7	1.2604e-7
chr8	26411575	26411672	9238666	0	+	0.381443	(0.36,0.39]	chr8	707583	13	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	2	191	2	5.84337	6.5697849999999995	7.2962	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	119100332	119100408	12626653	0	-	0.447368	(0.42,0.455]	chr11	979866	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	154	2	5.54298	6.568955	7.59493	1.72546e-10	1e-12	2.45005e-8	2.25522e-10
chr6	43512439	43512501	7707991	0	-	0.516129	(0.49,0.53]	chr6	591418	1	CDS	CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	94	2	6.32907	6.567125	6.80518	3.09658e-8	3.30206e-10	2.04921e-6	4.346e-8
chr6	169801511	169801608	7554766	0	+	0.71134	(0.59,1]	chr6	576793	8	EXON_LNCRNA	EXON_LNCRNA	LINC00574	ENSG00000231690.3	ENST00000420557.3	lncRNA	lncRNA	lncRNA	lncRNA	0	170	2	5.36203	6.56499	7.76795	3.74697e-4	1.00804e-10	0.00560631	1.36949e-8
chr4	112612888	112612988	5601171	0	-	0.34	(0.33,0.36]	chr4	446826	3	SS3_PROX	SS3_PROX:INTRON	ZGRF1	ENSG00000138658.16	ENST00000445203.6:ENST00000505019.6:ENST00000473015.5:ENST00000309071.9:ENST00000264370.9:ENST00000514770.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	171	2	4.81608	6.56391	8.31174	1.61632e-7	1e-12	9.55034e-6	2.25522e-10
chr9	12972941	12973040	10572348	0	-	0.474747	(0.455,0.49]	chr9	800168	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187K14.1:PRDX1P1	ENSG00000285637.2:ENSG00000214121.4	ENST00000649120.1:ENST00000449329.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	109	2	5.67339	6.56345	7.45351	2.05982e-6	1e-12	8.10246e-5	2.25522e-10
chr1	227749705	227749805	742607	0	+	0.46	(0.455,0.49]	chr1	74944	4	SS5_PROX	SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000606873.1:ENST00000491439.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	6.09672	6.5634	7.03008	8.84067e-8	4.60763e-11	5.61099e-6	6.82387e-9
chrX	10160449	10160549	18572549	0	+	0.57	(0.53,0.59]	chrX	1586799	15	INTRON	INTRON	CLCN4	ENSG00000073464.13	ENST00000380833.9:ENST00000380829.5:ENST00000421085.7:ENST00000675769.1:ENST00000675144.1:ENST00000674669.1:ENST00000454850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	143	2	5.27087	6.5623000000000005	7.85373	5.9416e-5	1e-12	0.00130151	2.25522e-10
chr12	49758382	49758432	12869220	0	+	0.5	(0.49,0.53]	chr12	999627	1	CDS	CDS:UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000547832.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1:ENST00000547013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	551	2	6.19473	6.55877	6.92281	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	116388130	116388187	423775	0	+	0.491228	(0.49,0.53]	chr1	41771	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP1A1	ENSG00000163399.16	ENST00000418797.5:ENST00000295598.10:ENST00000537345.5:ENST00000369494.5:ENST00000369496.8:ENST00000463382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	5.46274	6.558605	7.65447	1.13094e-5	1e-12	3.3464e-4	2.25522e-10
chr6	49606757	49606857	7729611	0	-	0.37	(0.36,0.39]	chr6	592938	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	2	184	2	5.70418	6.5566700000000004	7.40916	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	71441368	71441440	12444469	0	-	0.541667	(0.53,0.59]	chr11	966993	3	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000683874.1:ENST00000526780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	272	2	5.18735	6.55475	7.92215	3.35143e-12	1e-12	7.16503e-10	2.25522e-10
chr8	37895876	37895975	9794544	0	-	0.383838	(0.36,0.39]	chr8	740428	179	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	6.34426	6.553095000000001	6.76193	1.47018e-8	6.69508e-11	1.07983e-6	1.0436e-8
chr17	9575391	9575491	16439763	0	-	0.49	(0.455,0.49]	chr17	1341208	2	SS5_PROX	SS5_PROX:INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000574431.5:ENST00000575294.6:ENST00000573016.2:ENST00000573373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	121	2	5.4037	6.55104	7.69838	1.20695e-5	1e-12	3.52389e-4	2.25522e-10
chr11	32387971	32388070	12340415	0	-	0.424242	(0.42,0.455]	chr11	953634	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WT1	ENSG00000184937.16	ENST00000379077.9:ENST00000452863.10:ENST00000379079.8:ENST00000530998.5:ENST00000332351.9:ENST00000651819.1:ENST00000652724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	6.06853	6.550269999999999	7.03201	2.14495e-7	1.22439e-11	1.07721e-5	2.27934e-9
chr17	78171509	78171608	16367713	0	+	0.585859	(0.53,0.59]	chr17	1329561	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000591770.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	178	2	5.50127	6.550095	7.59892	6.89133e-10	1e-12	8.24878e-8	2.25522e-10
chr1	25303321	25303390	103775	0	+	0.57971	(0.53,0.59]	chr1	12154	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	176	2	5.70315	6.5492799999999995	7.39541	1.09687e-10	4.99978e-12	1.47014e-8	1.02184e-9
chr16	18794673	18794683	15877094	0	-	0.3	(0.29,0.33]	chr16	1269305	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	114	2	6.28723	6.546984999999999	6.80674	1.08371e-10	1e-12	1.45549e-8	2.46312e-10
chr2	241668539	241668612	2469934	0	+	0.643836	(0.59,1]	chr2	223547	1	CDS	CDS:UTR3:EXON_MRNA	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000479941.1:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	141	2	5.76827	6.546495	7.32472	5.97759e-5	2.79623e-9	0.00130766	2.57422e-7
chr11	5254514	5254536	12240614	0	-	0.409091	(0.39,0.42]	chr11	946082	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2643I7.4:HBG2:CTD-2643I7.5	ENSG00000284931.1:ENSG00000196565.15:ENSG00000239920.2	ENST00000642908.1:ENST00000647543.1:ENST00000336906.6:ENST00000380252.6:ENST00000444587.1:ENST00000380259.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	147	2	6.45029	6.54251	6.63473	1.60065e-9	1e-12	1.59782e-7	2.46312e-10
chr2	205354164	205354264	2333480	0	+	0.45	(0.42,0.455]	chr2	210858	56	INTRON	INTRON	PARD3B	ENSG00000116117.18	ENST00000406610.7:ENST00000358768.6:ENST00000351153.5:ENST00000349953.7:ENST00000613457.4:ENST00000614500.3:ENST00000622699.2:ENST00000494482.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	147	2	6.02172	6.539735	7.05775	4.19493e-11	1.02018e-12	6.29726e-9	2.50398e-10
chr10	69103870	69103945	11094162	0	+	0.506667	(0.49,0.53]	chr10	843404	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	514	2	6.38549	6.53616	6.68683	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	177594211	177594285	6407883	0	+	0.554054	(0.53,0.59]	chr5	498324	2	CDS	CDS:EXON_MRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000507723.1:ENST00000513799.5:ENST00000510499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	283	2	5.55326	6.5360700000000005	7.51888	1.47815e-12	1e-12	3.48865e-10	2.25522e-10
chr22	41064342	41064439	18378067	0	+	0.56701	(0.53,0.59]	chr22	1564055	4	EXON_PSEUDO	EXON_PSEUDO	RP11-12M9.3	ENSG00000237214.3	ENST00000418783.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	98	2	6.41988	6.533615	6.64735	2.8743e-8	4.80744e-9	2.10359e-6	4.10382e-7
chr1	45515653	45515730	978345	0	-	0.428571	(0.42,0.455]	chr1	103101	1	CDS	CDS:EXON_MRNA:INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	3	235	2	5.3419	6.533144999999999	7.72439	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	88334936	88334998	12533490	0	-	0.354839	(0.33,0.36]	chr11	972575	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000676529.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	5.73379	6.529955	7.32612	5.95199e-7	1e-12	2.84227e-5	2.25522e-10
chrX	153715615	153715689	19273769	0	-	0.527027	(0.49,0.53]	chrX	1637379	2	CDS	CDS:EXON_MRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1:ENST00000645802.1:ENST00000468947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	207	2	5.57128	6.5298099999999994	7.48834	1.00309e-12	1e-12	2.46312e-10	2.25926e-10
chr17	75033932	75034032	16352978	0	+	0.47	(0.455,0.49]	chr17	1326897	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KCTD2	ENSG00000180901.11	ENST00000579242.5:ENST00000582840.5:ENST00000584767.5:ENST00000584570.5:ENST00000581589.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	70	5999	2	6.33009	6.529045	6.728	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	112917947	112918044	1232357	0	-	0.525773	(0.49,0.53]	chr1	120462	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000481750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	483	2	5.95759	6.52646	7.09533	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	100354494	100354563	11219403	0	+	0.521739	(0.49,0.53]	chr10	853916	2	CDS	CDS:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	12	1129	2	6.33899	6.524604999999999	6.71022	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	91643298	91643396	350543	0	+	0.459184	(0.455,0.49]	chr1	34388	9	EXON_PSEUDO	EXON_PSEUDO	HSP90B3P	ENSG00000203914.4	ENST00000415545.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	132	2	5.16215	6.522625	7.8831	5.04348e-5	1e-12	0.00113788	2.25522e-10
chr11	119055261	119055339	12626549	0	-	0.525641	(0.49,0.53]	chr11	979821	2	CDS	CDS:UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5:ENST00000534233.5:ENST00000526656.5:ENST00000531968.5:ENST00000532421.5:ENST00000533381.5:ENST00000527038.6:ENST00000622474.4:ENST00000529174.1:ENST00000530467.5:ENST00000610597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	161	2	6.01888	6.522305	7.02573	3.98821e-11	2.66986e-12	6.62185e-9	5.40608e-10
chr22	49527195	49527295	18543136	0	-	0.45	(0.42,0.455]	chr22	1583944	856	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	330	2	6.42479	6.521565	6.61834	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	26188709	26188764	7647178	0	-	0.527273	(0.49,0.53]	chr6	582534	1	UTR3	UTR3:EXON_MRNA	H4C4	ENSG00000277157.2	ENST00000614247.2	protein_coding	protein_coding	protein_coding	protein_coding	1	157	2	5.55308	6.5210349999999995	7.48899	2.30337e-10	1e-12	3.16302e-8	2.25522e-10
chr12	124013316	124013412	13130934	0	+	0.40625	(0.39,0.42]	chr12	1026671	5	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	84	2	6.32036	6.520849999999999	6.72134	7.2106e-9	7.30692e-10	6.4226e-7	7.92185e-8
chr9	125240240	125240309	10856267	0	-	0.362319	(0.36,0.39]	chr9	822391	2	CDS	CDS:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	711	2	5.53929	6.520020000000001	7.50075	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	106818933	106819032	12580623	0	-	0.40404	(0.39,0.42]	chr11	975685	81	INTRON	INTRON	GUCY1A2	ENSG00000152402.11	ENST00000526355.7:ENST00000282249.6:ENST00000347596.2	protein_coding	protein_coding	protein_coding	protein_coding	22	2122	2	6.00866	6.517905	7.02715	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	28717788	28717868	16487091	0	-	0.75	(0.59,1]	chr17	1348212	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB34	ENSG00000109113.20	ENST00000453384.7:ENST00000301043.10:ENST00000625712.2:ENST00000395245.9:ENST00000415040.6:ENST00000450529.5:ENST00000436730.7:ENST00000430132.6:ENST00000583538.5:ENST00000636772.1:ENST00000412625.5:ENST00000353676.9:ENST00000419712.7:ENST00000636534.2:ENST00000580843.6:ENST00000482688.5:ENST00000582934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	365	2	5.91277	6.51698	7.12119	2.23396e-8	4.93494e-12	1.68818e-6	9.31159e-10
chr11	5243253	5243328	12240526	0	-	0.44	(0.42,0.455]	chr11	946051	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_PROX:INTRON	HBD:HBBP1	ENSG00000223609.11:ENSG00000229988.2	ENST00000643122.1:ENST00000454892.2:ENST00000433329.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	2	285	2	5.87256	6.511525	7.15049	5.34073e-12	1e-12	1.08304e-9	2.25522e-10
chr12	7931244	7931324	13193287	0	-	0.6	(0.59,1]	chr12	1033515	1	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	326	2	5.28544	6.51147	7.7375	1.19596e-9	1.27482e-10	1.33158e-7	1.68088e-8
chr4	69782257	69782356	5460744	0	-	0.575758	(0.53,0.59]	chr4	437196	84	INTRON	INTRON	SULT1B1	ENSG00000173597.9	ENST00000512870.1	protein_coding	protein_coding	protein_coding	protein_coding	3	471	2	5.26147	6.51138	7.76129	4.02807e-11	1e-12	6.67212e-9	2.25522e-10
chr12	49269894	49269994	12865685	0	+	0.47	(0.455,0.49]	chr12	999057	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	188	2	5.3221	6.51024	7.69838	7.8817e-12	1e-12	1.53714e-9	2.25522e-10
chr1	112917562	112917658	1232353	0	-	0.416667	(0.39,0.42]	chr1	120462	5	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	460	2	5.78927	6.508525000000001	7.22778	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	49499529	49499535	17370826	0	+	0.5	(0.49,0.53]	chr19	1443167	1	CDS	CDS:UTR3:EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000270625.7:ENST00000594493.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	171	2	6.32163	6.508405	6.69518	9.10937e-10	1e-12	1.0553e-7	2.25522e-10
chr11	6615170	6615249	12249930	0	-	0.582278	(0.53,0.59]	chr11	946842	1	CDS	CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	226	2	5.5729	6.50793	7.44296	3.13982e-12	1.82321e-12	6.75411e-10	3.86208e-10
chrX	48527154	48527219	18691843	0	+	0.553846	(0.53,0.59]	chrX	1594142	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1:ENST00000466461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	303	2	6.48533	6.50499	6.52465	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	49606857	49606881	7729612	0	-	0.416667	(0.39,0.42]	chr6	592939	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	1	137	2	5.60714	6.504215	7.40129	7.4628e-11	1e-12	1.15039e-8	2.25522e-10
chr19	45478635	45478735	17588742	0	-	0.53	(0.49,0.53]	chr19	1480159	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ERCC1	ENSG00000012061.16	ENST00000423698.6	protein_coding	protein_coding	protein_coding	protein_coding	88	8431	2	6.07452	6.501355	6.92819	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	6616408	6616503	12249949	0	-	0.568421	(0.53,0.59]	chr11	946853	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000436873.7:ENST00000530040.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	303	2	6.37633	6.499345	6.62236	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	62271564	62271664	7763375	0	-	0.43	(0.42,0.455]	chr6	595826	939	INTRON	INTRON	KHDRBS2	ENSG00000112232.10	ENST00000675091.1:ENST00000281156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.77452	6.498075	7.22163	8.63204e-7	8.33278e-12	3.91474e-5	1.47872e-9
chr4	37604759	37604858	5377177	0	-	0.494949	(0.49,0.53]	chr4	430941	132	INTRON	INTRON	RELL1	ENSG00000181826.10	ENST00000314117.8	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	6.01162	6.495585	6.97955	3.55916e-7	6.262e-11	1.64926e-5	9.81218e-9
chr11	1491577	1491677	12229824	0	-	0.44	(0.42,0.455]	chr11	944267	49	INTRON	INTRON	MOB2	ENSG00000182208.14	ENST00000526462.5:ENST00000529380.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	0	86	2	6.11097	6.493355	6.87574	1.55657e-7	6.07006e-11	8.1934e-6	9.56162e-9
chr5	177338546	177338605	6991118	0	-	0.542373	(0.53,0.59]	chr5	534745	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.74558	6.491035	7.23649	3.61407e-6	2.51675e-11	1.29307e-4	3.96232e-9
chr8	67585401	67585501	9871524	0	-	0.41	(0.39,0.42]	chr8	746465	670	INTRON	INTRON	CPA6	ENSG00000165078.13	ENST00000297770.10:ENST00000638254.1:ENST00000479862.6:ENST00000518549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	1086	2	5.81121	6.49094	7.17067	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	46778752	46778830	17595497	0	-	0.576923	(0.53,0.59]	chr19	1481400	2	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	389	2	6.11235	6.489235	6.86612	1e-12	1e-12	2.46312e-10	2.25522e-10
chr18	1691774	1691874	16722388	0	+	0.53	(0.49,0.53]	chr18	1379489	7	INTRON	INTRON	RP11-476K15.1:CTD-2015H3.2	ENSG00000266602.2:ENSG00000266450.1	ENST00000668980.1:ENST00000661994.1:ENST00000660357.1:ENST00000657750.1:ENST00000662133.1:ENST00000671074.1:ENST00000653330.1:ENST00000655815.1:ENST00000653094.1:ENST00000662293.1:ENST00000669226.1:ENST00000668483.1:ENST00000653006.1:ENST00000663966.1:ENST00000665135.1:ENST00000660136.1:ENST00000580524.1	lncRNA	lncRNA	lncRNA	lncRNA	36	3596	2	4.92157	6.4881150000000005	8.05466	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	40089409	40089460	954841	0	-	0.490196	(0.49,0.53]	chr1	100892	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	171	2	5.0153	6.487985	7.96067	3.17103e-8	1e-12	2.29924e-6	2.25522e-10
chr19	580433	580461	17188306	0	+	0.642857	(0.59,1]	chr19	1410769	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	327	2	4.70308	6.487265	8.27145	7.98278e-8	1.85063e-12	5.11469e-6	3.91541e-10
chr20	32157881	32157969	17752553	0	+	0.579545	(0.53,0.59]	chr20	1498518	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	6.31551	6.4844550000000005	6.6534	6.83735e-8	4.28786e-9	4.03413e-6	4.06176e-7
chr17	63761229	63761290	16634824	0	-	0.52459	(0.49,0.53]	chr17	1367604	1	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	345	2	5.84326	6.48358	7.1239	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	156011809	156011886	1313088	0	-	0.558442	(0.53,0.59]	chr1	133086	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5:ENST00000368311.5:ENST00000472898.5:ENST00000466905.4:ENST00000474377.5:ENST00000531917.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	169	2	5.85519	6.480245	7.1053	8.57402e-11	2.43671e-11	1.18534e-8	4.25198e-9
chr11	125612591	125612669	12194456	0	+	0.512821	(0.49,0.53]	chr11	940774	1	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	490	2	6.19746	6.480180000000001	6.7629	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	11442450	11442515	17231190	0	+	0.553846	(0.53,0.59]	chr19	1419901	2	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000589990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	218	2	5.34071	6.479794999999999	7.61888	1.91781e-11	1e-12	3.11349e-9	2.46312e-10
chr1	225403402	225403463	1528069	0	-	0.360656	(0.36,0.39]	chr1	152777	1	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000441022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	175	2	5.65463	6.475415	7.2962	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	300511	300609	18549167	0	+	0.306122	(0.29,0.33]	chrX	1585413	13	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	6	394	2	5.54596	6.47367	7.40138	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	59551350	59551450	11958571	0	+	0.45	(0.42,0.455]	chr11	915353	50	INTRON	INTRON	CMB9-60A24.1	ENSG00000287264.1	ENST00000659845.1	lncRNA	lncRNA	lncRNA	lncRNA	17	1668	2	5.8904	6.47297	7.05554	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	119786593	119786683	19192772	0	-	0.411111	(0.39,0.42]	chrX	1631593	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000477403.1:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	1284	2	6.34789	6.469915	6.59194	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	49606881	49606921	7729613	0	-	0.45	(0.42,0.455]	chr6	592940	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	8	642	2	5.97844	6.467385	6.95633	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	869369	869467	5276276	0	-	0.489796	(0.455,0.49]	chr4	424387	8	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	145	2	5.45759	6.463445	7.4693	6.20166e-10	1e-12	6.84699e-8	2.46312e-10
chr5	177595316	177595416	6407896	0	+	0.56	(0.53,0.59]	chr5	498331	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000507723.1:ENST00000513799.5:ENST00000510499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	461	2	6.10554	6.46323	6.82092	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	43769581	43769646	14896532	0	+	0.476923	(0.455,0.49]	chr15	1171308	2	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	286	2	5.60377	6.461964999999999	7.3201599999999996	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	46782422	46782522	17595535	0	-	0.56	(0.53,0.59]	chr19	1481407	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	7	792	2	6.37738	6.460615	6.54385	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	120888777	120888877	11290315	0	+	0.32	(0.29,0.33]	chr10	860241	3	SS3_PROX	SS3_PROX:INTRON	WDR11	ENSG00000120008.16	ENST00000263461.11:ENST00000605543.5:ENST00000497136.6:ENST00000604509.5:ENST00000605376.5:ENST00000478567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.77715	6.460335	7.14352	3.88822e-7	3.3088e-12	1.99593e-5	6.52561e-10
chr19	6117856	6117955	17212349	0	+	0.414141	(0.39,0.42]	chr19	1415672	81	INTRON	INTRON	CTB-66B24.1	ENSG00000267299.1	ENST00000588342.1	lncRNA	lncRNA	lncRNA	lncRNA	0	97	2	5.60958	6.46033	7.31108	2.11003e-6	2.28584e-12	8.25026e-5	4.71328e-10
chr1	40092044	40092108	954872	0	-	0.46875	(0.455,0.49]	chr1	100906	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2:ENST00000641548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	332	2	5.67552	6.45982	7.24412	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	44350441	44350469	16234907	0	+	0.571429	(0.53,0.59]	chr17	1314565	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000588143.5:ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	93	2	6.35508	6.459614999999999	6.56415	4.77539e-8	9.5574e-9	3.2714e-6	7.4729e-7
chr13	113321641	113321727	13908399	0	+	0.511628	(0.49,0.53]	chr13	1090357	2	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	99	2	5.70904	6.458679999999999	7.20832	2.30382e-6	1.11589e-11	8.86852e-5	1.91591e-9
chr12	124811869	124811965	13600495	0	-	0.583333	(0.53,0.59]	chr12	1071723	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	6.14112	6.458645	6.77617	2.39342e-7	1.61388e-9	1.32863e-5	1.60735e-7
chr5	60761533	60761633	6607950	0	-	0.33	(0.29,0.33]	chr5	510711	35	INTRON	INTRON	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000504455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	224	2	6.29955	6.45763	6.61571	4.11653e-9	1e-12	3.92438e-7	2.25522e-10
chr19	46775678	46775747	17595462	0	-	0.565217	(0.53,0.59]	chr19	1481384	2	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	5	399	2	5.67257	6.4575700000000005	7.24257	2.18214e-11	1e-12	3.84309e-9	2.25522e-10
chr15	95784658	95784757	15131228	0	+	0.606061	(0.59,1]	chr15	1190251	27	INTRON	INTRON	RP11-61O11.1	ENSG00000275016.5	ENST00000612595.2:ENST00000667774.1:ENST00000616588.4:ENST00000656202.1:ENST00000666386.1	lncRNA	lncRNA	lncRNA	lncRNA	27	4778	2	6.25724	6.45646	6.65568	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	33710225	33710274	12344215	0	-	0.44898	(0.42,0.455]	chr11	953996	1	CDS	CDS:UTR3:EXON_MRNA	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	6.31054	6.456455	6.60237	1.21087e-8	2.80087e-9	1.00007e-6	2.57422e-7
chr9	91904981	91905081	10734850	0	-	0.37	(0.36,0.39]	chr9	812027	179	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	128	2	5.64016	6.456334999999999	7.27251	8.28589e-11	1e-12	1.15034e-8	2.46312e-10
chr20	23637619	23637690	17930526	0	-	0.647887	(0.59,1]	chr20	1517758	1	CDS	CDS:EXON_MRNA	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.31775	6.455745	6.59374	3.32583e-6	4.0058e-7	1.2115e-4	1.83141e-5
chr11	75566884	75566971	12023331	0	+	0.643678	(0.59,1]	chr11	927007	6	CDS	CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	338	2	5.7446	6.455635	7.16667	1.64169e-8	1.96522e-11	1.30036e-6	3.18305e-9
chr1	183477390	183477489	597228	0	+	0.313131	(0.29,0.33]	chr1	61990	31	INTRON	INTRON	SMG7	ENSG00000116698.21	ENST00000440812.7:ENST00000367537.7:ENST00000508461.5:ENST00000507691.6:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000638826.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	6.10705	6.455080000000001	6.80311	6.22381e-8	2.30598e-11	3.71811e-6	4.03736e-9
chr8	125987600	125987700	10067238	0	-	0.54	(0.53,0.59]	chr8	757555	156	INTRON	INTRON	LINC00861	ENSG00000245164.8	ENST00000651482.1	lncRNA	lncRNA	lncRNA	lncRNA	10	1205	2	5.04242	6.454045	7.86567	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	165728022	165728121	1341348	0	-	0.555556	(0.53,0.59]	chr1	137597	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	254	2	4.89903	6.4538199999999994	8.00861	6.20006e-11	1e-12	9.72972e-9	2.25522e-10
chr1	35609245	35609342	938398	0	-	0.57732000000000006	(0.53,0.59]	chr1	98706	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	217	2	4.96459	6.4489149999999995	7.93324	6.91956e-10	1e-12	8.27309e-8	2.25522e-10
chr21	34993648	34993748	18228808	0	-	0.53	(0.49,0.53]	chr21	1546951	1003	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	5.87191	6.4488199999999996	7.02573	9.67449e-7	3.98821e-11	3.88631e-5	6.62185e-9
chr11	61311255	61311349	12404007	0	-	0.212766	[0,0.29]	chr11	960205	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	5.88606	6.44778	7.0095	1.04493e-11	3.93141e-12	1.80922e-9	8.20809e-10
chr9	35066674	35066745	10638184	0	-	0.478873	(0.455,0.49]	chr9	804561	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680731.1:ENST00000681562.1:ENST00000681845.1:ENST00000680079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	6.18563	6.44547	6.70531	4.30535e-8	9.72532e-10	2.9886e-6	1.02291e-7
chr3	32997244	32997344	4110940	0	-	0.59	(0.53,0.59]	chr3	343426	2	CDS	CDS:EXON_MRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12	protein_coding	protein_coding	protein_coding	protein_coding	1	171	2	5.18188	6.444089999999999	7.7063	1.14815e-8	1e-12	9.54306e-7	2.25522e-10
chr1	154378990	154379089	1302980	0	-	0.494949	(0.49,0.53]	chr1	131245	9	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	RP11-350G8.4:RPSAP17	ENSG00000237920.2:ENSG00000226855.1	ENST00000449634.2:ENST00000437336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	0	118	2	5.24579	6.44299	7.64019	4.073e-5	1e-12	9.64741e-4	2.25522e-10
chr16	30723976	30724074	15631065	0	+	0.581633	(0.53,0.59]	chr16	1240525	5	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	6.17906	6.43966	6.70026	1.81157e-7	3.08274e-9	1.05195e-5	2.80081e-7
chr11	130120765	130120810	12206883	0	+	0.577778	(0.53,0.59]	chr11	942011	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000529483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.64073	6.43861	7.23649	7.00135e-6	2.51675e-11	2.25852e-4	3.96232e-9
chr1	149887468	149887523	1287111	0	-	0.454545	(0.42,0.455]	chr1	127856	1	UTR3	UTR3:EXON_MRNA	H2AC21	ENSG00000184270.6	ENST00000331128.6	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	6.41184	6.438314999999999	6.46479	1.42035e-8	3.08935e-9	1.0503e-6	3.05676e-7
chr12	49129241	49129315	13323982	0	-	0.5	(0.49,0.53]	chr12	1045749	1	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000549870.5:ENST00000547476.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	504	2	6.20298	6.437565	6.67215	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	160357111	160357182	496801	0	+	0.492958	(0.49,0.53]	chr1	53507	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	6.01403	6.436785	6.85954	2.61944e-7	3.1478e-10	1.42854e-5	3.76745e-8
chr12	1839041	1839141	13170648	0	-	0.64	(0.59,1]	chr12	1030273	270	INTRON	INTRON	CACNA2D4	ENSG00000151062.15	ENST00000280663.12:ENST00000382722.10:ENST00000537784.5:ENST00000444595.6:ENST00000587995.5:ENST00000588077.5:ENST00000586184.5:ENST00000585708.5:ENST00000585732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	867	2	6.17096	6.435595	6.70023	1.06691e-10	1e-12	1.58498e-8	2.25522e-10
chr17	44352092	44352170	16234932	0	+	0.628205	(0.59,1]	chr17	1314583	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.37053	6.43532	6.50011	2.4605e-6	7.17564e-7	9.40752e-5	3.01149e-5
chr2	187488336	187488375	3070390	0	-	0.307692	(0.29,0.33]	chr2	271855	1	CDS	CDS:EXON_MRNA:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8:ENST00000481389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	6.06187	6.434305	6.80674	3.62101e-8	1.08371e-10	2.57694e-6	1.45549e-8
chr12	50930050	50930150	12875831	0	+	0.56	(0.53,0.59]	chr12	1000529	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	6.13509	6.43358	6.73207	2.62487e-7	2.20251e-9	1.27527e-5	2.2752e-7
chr5	72910806	72910905	6029411	0	+	0.30303	(0.29,0.33]	chr5	472817	22	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	178	2	5.41934	6.433145	7.44695	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	7148129	7148229	9181994	0	+	0.51	(0.49,0.53]	chr8	701147	246	INTRON	INTRON	AF228730.14	ENSG00000284620.2	ENST00000641821.1:ENST00000641436.1:ENST00000649959.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	193	2	6.14533	6.429775	6.71422	9.58343e-8	1e-12	6.01659e-6	2.25522e-10
chr16	85400737	85400837	15795325	0	+	0.45	(0.42,0.455]	chr16	1256986	414	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.97972	6.42773	6.87574	4.13864e-7	6.07006e-11	1.88179e-5	9.56162e-9
chr6	26250194	26250294	7647259	0	-	0.57	(0.53,0.59]	chr6	582572	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C7	ENSG00000277775.2	ENST00000618052.2	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	6.10216	6.426735	6.75131	3.17557e-7	1.99745e-9	1.68263e-5	1.9363e-7
chr21	18111356	18111456	18063015	0	+	0.41	(0.39,0.42]	chr21	1532407	830	INTRON	INTRON	CHODL	ENSG00000154645.14	ENST00000400128.5:ENST00000400131.5:ENST00000400135.5:ENST00000400127.5	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	6.15233	6.425174999999999	6.69802	2.01827e-10	1e-12	2.80668e-8	2.25522e-10
chr19	20471185	20471285	17267819	0	+	0.54	(0.53,0.59]	chr19	1426891	185	INTRON	INTRON	CTC-513N18.6	ENSG00000269043.2	ENST00000598131.1	lncRNA	lncRNA	lncRNA	lncRNA	4	650	2	5.26147	6.424385	7.5873	4.02807e-11	1e-12	6.67212e-9	2.25522e-10
chr1	30738939	30739000	915613	0	-	0.508197	(0.49,0.53]	chr1	95880	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	LAPTM5:MIR4420	ENSG00000162511.8:ENSG00000264773.1	ENST00000294507.4:ENST00000464569.1:ENST00000583944.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	182	2	6.26566	6.423674999999999	6.58169	3.67654e-8	1e-12	2.61023e-6	2.25522e-10
chr7	101215909	101216009	8953743	0	-	0.55	(0.53,0.59]	chr7	684710	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000424135.5:ENST00000489927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	300	2	5.98379	6.423225	6.86266	6.86229e-12	1e-12	1.35666e-9	2.25522e-10
chr16	24771539	24771639	15602532	0	+	0.23	[0,0.29]	chr16	1237101	128	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	6.11817	6.420325	6.72248	2.14362e-8	1.97857e-10	1.62968e-6	2.49021e-8
chr11	62639094	62639110	12409858	0	-	0.5625	(0.53,0.59]	chr11	961315	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	99	2	5.79528	6.4202449999999995	7.04521	2.61912e-6	1.48757e-10	9.89086e-5	1.92788e-8
chr22	21789901	21790000	18442657	0	-	0.191919	[0,0.29]	chr22	1572534	7	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	6.3638	6.41996	6.47612	5.82594e-9	6.82863e-10	4.88601e-7	8.19252e-8
chrX	9569340	9569440	18567790	0	+	0.52	(0.49,0.53]	chrX	1586476	84	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	6.10288	6.416765	6.73065	1.33258e-7	1.01558e-9	8.01671e-6	1.06338e-7
chr7	125457985	125458085	8513211	0	+	0.4	(0.39,0.42]	chr7	649419	118	INTRON	INTRON	POT1-AS1	ENSG00000224897.8	ENST00000657243.1:ENST00000458437.2:ENST00000651909.1:ENST00000667489.1:ENST00000453278.1:ENST00000415896.1	lncRNA	lncRNA	lncRNA	lncRNA	1	136	2	5.89067	6.416335	6.942	1.64404e-11	7.68741e-12	2.96031e-9	1.37538e-9
chr11	125605628	125605681	12194377	0	+	0.45283	(0.42,0.455]	chr11	940744	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526213.5:ENST00000527456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	156	2	6.25836	6.41445	6.57054	1.16955e-9	1e-12	1.307e-7	2.25522e-10
chr7	106097689	106097758	8977685	0	-	0.42029	(0.42,0.455]	chr7	687040	1	CDS	CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	6.13779	6.413375	6.68896	5.19796e-8	1.30378e-9	3.50456e-6	1.32846e-7
chr1	66912766	66912865	1076982	0	-	0.434343	(0.42,0.455]	chr1	109988	59	INTRON	INTRON	DNAI4	ENSG00000152763.17	ENST00000371026.8:ENST00000371023.7:ENST00000531980.5:ENST00000371022.3:ENST00000532629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	171	2	6.31054	6.41123	6.51192	1.21087e-8	1e-12	1.00007e-6	2.25522e-10
chr7	65974614	65974704	8834517	0	-	0.611111	(0.59,1]	chr7	674588	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1:ENST00000465785.5:ENST00000479038.1:ENST00000489482.1:ENST00000475316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	115	2	6.05296	6.40874	6.76452	1.41714e-5	1.3389e-7	4.01358e-4	7.1964e-6
chr1	165651013	165651087	515855	0	+	0.5	(0.49,0.53]	chr1	55473	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000488688.1:ENST00000367883.3:ENST00000627653.1:ENST00000609263.1:ENST00000477450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	94	2	5.70904	6.40857	7.1081	2.30382e-6	2.98546e-11	8.86852e-5	4.62304e-9
chr11	57414932	57415019	12394508	0	-	0.54023	(0.53,0.59]	chr11	958651	1	CDS	CDS:EXON_MRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5:ENST00000530005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	215	2	5.61647	6.40834	7.20021	3.54305e-11	1.108e-12	5.39785e-9	2.70364e-10
chr1	28982525	28982608	913990	0	-	0.542169	(0.53,0.59]	chr1	95582	4	EXON_PSEUDO	EXON_PSEUDO	RP4-604A21.1	ENSG00000225616.2	ENST00000425821.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	160	2	5.70315	6.407265	7.11138	1.09687e-10	7.48299e-11	1.47014e-8	1.15265e-8
chr11	62572662	62572742	12409147	0	-	0.5875	(0.53,0.59]	chr11	960977	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000524420.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	676	2	6.20964	6.40516	6.60068	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	75569015	75569092	12023357	0	+	0.532468	(0.53,0.59]	chr11	927017	2	CDS	CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000530284.5:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000525876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	411	2	6.07645	6.40205	6.72765	2.69806e-12	1e-12	5.91346e-10	2.25522e-10
chrX	9568741	9568841	18567784	0	+	0.48	(0.455,0.49]	chrX	1586476	78	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.99598	6.401315	6.80665	3.33072e-7	1.63335e-10	1.56608e-5	2.33035e-8
chr17	80927669	80927769	16377718	0	+	0.44	(0.42,0.455]	chr17	1331197	18	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	6.23127	6.400905	6.57054	6.12952e-8	1.16955e-9	3.67043e-6	1.307e-7
chr20	52110872	52110960	18011835	0	-	0.522727	(0.49,0.53]	chr20	1526706	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZFP64:ERP29P1	ENSG00000020256.20:ENSG00000233347.1	ENST00000371518.6:ENST00000361387.6:ENST00000477786.5:ENST00000442902.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	4	325	2	5.86739	6.399615000000001	6.93184	9.9329e-11	1e-12	1.4926e-8	2.25522e-10
chr1	630730	630830	823336	0	-	0.41	(0.39,0.42]	chr1	81476	2	SS5_PROX	SS5_PROX:INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	661	46181	2	6.18004	6.39828	6.61652	1.40743e-12	1e-12	3.05175e-10	2.46312e-10
chr14	22575167	22575233	14526015	0	-	0.5	(0.49,0.53]	chr14	1137870	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	6.14533	6.396365	6.6474	9.58343e-8	2.1237e-9	6.01659e-6	2.03271e-7
chr14	32485012	32485111	14209659	0	+	0.414141	(0.39,0.42]	chr14	1113273	101	INTRON	INTRON	AKAP6	ENSG00000151320.11	ENST00000280979.9:ENST00000557354.5:ENST00000557272.1:ENST00000553547.5	protein_coding	protein_coding	protein_coding	protein_coding	665	46271	2	6.13667	6.396129999999999	6.65559	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	37849320	37849420	18364377	0	+	0.68	(0.59,1]	chr22	1562137	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	111	2	6.26297	6.39353	6.52409	4.52763e-6	6.1879e-7	1.57276e-4	2.65084e-5
chr11	119051531	119051625	12626501	0	-	0.585106	(0.53,0.59]	chr11	979795	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	339	2	5.48204	6.393084999999999	7.30413	8.20924e-10	1e-12	9.63308e-8	2.25522e-10
chr1	161506401	161506471	500404	0	+	0.571429	(0.53,0.59]	chr1	54213	2	CDS	CDS:EXON_MRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000497474.1:ENST00000482233.1:ENST00000467525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	91	2	6.02093	6.38612	6.75131	5.66478e-7	1.99745e-9	2.7364e-5	1.9363e-7
chr22	49449110	49449210	18542355	0	-	0.46	(0.455,0.49]	chr22	1583944	75	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	92	2	5.51043	6.38522	7.26001	9.08728e-6	1.56997e-12	2.53877e-4	3.66805e-10
chr22	49527794	49527894	18543142	0	-	0.53	(0.49,0.53]	chr22	1583944	862	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	82	2	6.25601	6.384335	6.51266	5.54522e-8	4.62014e-9	3.37102e-6	4.31971e-7
chr4	110051680	110051762	5595070	0	-	0.439024	(0.42,0.455]	chr4	446475	4	CDS	CDS:UTR3:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000507451.1:ENST00000506625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	6.23127	6.383705	6.53614	6.12952e-8	1.60905e-9	3.67043e-6	1.7333e-7
chr6	49636655	49636712	7729921	0	-	0.438596	(0.42,0.455]	chr6	592992	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	240	2	6.03932	6.38341	6.7275	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	184242884	184242957	4622923	0	-	0.506849	(0.49,0.53]	chr3	381719	2	CDS	CDS:UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000485912.1:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	185	2	5.0016	6.382759999999999	7.76392	2.89749e-10	1e-12	3.86714e-8	2.25522e-10
chr17	63760913	63760979	16634820	0	-	0.5	(0.49,0.53]	chr17	1367600	1	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	144	2	5.3217	6.38103	7.44036	2.07746e-9	1.06848e-12	2.15776e-7	2.39417e-10
chr17	22524487	22524575	16169263	0	+	0.409091	(0.39,0.42]	chr17	1304369	5	UTR3	UTR3:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.80735	6.380554999999999	6.95376	4.99312e-7	8.21028e-11	2.4714e-5	1.14209e-8
chr1	21828340	21828426	890661	0	-	0.55814	(0.53,0.59]	chr1	92228	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.8373100000000004	6.380165	6.92302	2.06883e-6	4.15369e-10	7.35008e-5	5.31939e-8
chrX	9568541	9568641	18567782	0	+	0.5	(0.49,0.53]	chrX	1586476	76	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	145	2	5.97618	6.37989	6.7836	6.30366e-10	3.08931e-12	6.93109e-8	6.6523e-10
chr1	112917466	112917562	1232352	0	-	0.427083	(0.42,0.455]	chr1	120462	4	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	558	2	5.82153	6.379545	6.93756	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	122451887	122451972	7923804	0	-	0.423529	(0.42,0.455]	chr6	606824	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	5.14793	6.378864999999999	7.6098	7.88508e-9	1e-12	6.93758e-7	2.25522e-10
chr3	10634800	10634900	4035656	0	-	0.46	(0.455,0.49]	chr3	338816	56	INTRON	INTRON	ATP2B2	ENSG00000157087.20	ENST00000646379.1	protein_coding	protein_coding	protein_coding	protein_coding	1	176	2	4.53876	6.376225	8.21369	1.31171e-6	1e-12	5.53834e-5	2.25522e-10
chr6	44230413	44230481	7161486	0	+	0.602941	(0.59,1]	chr6	553789	2	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	229	2	5.86082	6.3742350000000005	6.88765	1.04437e-7	6.9572e-10	6.52137e-6	7.5804e-8
chr19	18388285	18388376	17258396	0	+	0.758242	(0.59,1]	chr19	1425388	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GDF15	ENSG00000130513.6	ENST00000595973.2:ENST00000252809.3:ENST00000594925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	804	2	5.80943	6.373675	6.93792	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	63604783	63604872	1850117	0	+	0.449438	(0.42,0.455]	chr2	175428	2	CDS	CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	133	2	5.41396	6.373670000000001	7.33338	6.27361e-10	2.68052e-12	7.59962e-8	5.42137e-10
chr1	28095838	28095935	912443	0	-	0.453608	(0.42,0.455]	chr1	95414	2	EXON_PSEUDO	EXON_PSEUDO	SPCS2P4	ENSG00000228589.3	ENST00000436160.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	132	2	5.46696	6.372775000000001	7.27859	3.70981e-10	4.69058e-12	4.82791e-8	8.8938e-10
chr1	21445086	21445186	90532	0	+	0.58	(0.53,0.59]	chr1	10354	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NBPF3	ENSG00000142794.19	ENST00000454000.6:ENST00000318220.10:ENST00000318249.10:ENST00000478653.6:ENST00000485941.2:ENST00000342104.9:ENST00000486229.5:ENST00000434838.6:ENST00000467103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	6.17906	6.371605	6.56415	1.81157e-7	9.5574e-9	1.05195e-5	7.4729e-7
chrX	42098837	42098921	19051815	0	-	0.535714	(0.53,0.59]	chrX	1619238	2	EXON_PSEUDO	EXON_PSEUDO	ATP5MC2P4	ENSG00000228847.1	ENST00000442175.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	88	2	6.17906	6.371605	6.56415	1.81157e-7	9.5574e-9	1.05195e-5	7.4729e-7
chr11	68900543	68900605	12433632	0	-	0.467742	(0.455,0.49]	chr11	966417	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL21	ENSG00000197345.13	ENST00000450904.6:ENST00000362034.7:ENST00000565125.5:ENST00000541279.1:ENST00000567045.5:ENST00000544567.5:ENST00000541265.1:ENST00000536637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.95213	6.36957	6.78701	2.72823e-7	4.61296e-10	1.4763e-5	5.28185e-8
chr12	49272446	49272543	12865712	0	+	0.525773	(0.49,0.53]	chr12	999063	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	1246	2	6.16839	6.36936	6.57033	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	154429047	154429119	18917837	0	+	0.583333	(0.53,0.59]	chrX	1611890	1	CDS	CDS:EXON_MRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000446552.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	6.06212	6.368085000000001	6.67405	4.23179e-7	3.84457e-9	2.1371e-5	3.39055e-7
chrX	98593064	98593164	18780957	0	+	0.47	(0.455,0.49]	chrX	1600845	136	INTRON	INTRON	RP11-485F13.1	ENSG00000281566.3	ENST00000649508.1:ENST00000650384.1:ENST00000626665.3:ENST00000627700.2	lncRNA	lncRNA	lncRNA	lncRNA	0	98	2	5.4037	6.36773	7.33176	1.20695e-5	2.23332e-12	3.52389e-4	4.62988e-10
chr14	75152031	75152087	14709254	0	-	0.375	(0.36,0.39]	chr14	1152555	1	CDS	CDS:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000555873.1:ENST00000555085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	86	2	5.55715	6.366545	7.17594	2.50226e-6	5.81657e-12	9.53193e-5	1.07598e-9
chr8	140343457	140343557	10130857	0	-	0.54	(0.53,0.59]	chr8	760895	317	INTRON	INTRON	TRAPPC9	ENSG00000167632.18	ENST00000648948.2:ENST00000438773.4:ENST00000520857.5	protein_coding	protein_coding	protein_coding	protein_coding	1	176	2	6.27966	6.365444999999999	6.45123	2.24134e-8	1e-12	1.68827e-6	2.25522e-10
chrX	23679164	23679225	18615996	0	+	0.442623	(0.42,0.455]	chrX	1589674	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000495599.1:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.65139	6.365335	7.07928	2.06893e-6	3.40258e-11	8.11386e-5	5.19745e-9
chr9	125240675	125240752	10856272	0	-	0.584416	(0.53,0.59]	chr9	822393	1	CDS	CDS:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	1885	2	5.86839	6.3627	6.85701	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	45904941	45905029	17987702	0	-	0.613636	(0.59,1]	chr20	1524203	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.88171	6.362295	6.84288	3.41939e-5	7.98778e-8	8.3505e-4	4.61179e-6
chr12	49128350	49128448	13323972	0	-	0.510204	(0.49,0.53]	chr12	1045746	4	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	406	2	6.24817	6.361765	6.47536	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	25388975	25389044	904059	0	-	0.666667	(0.59,1]	chr1	94020	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	6.0849	6.36163	6.63836	1.19649e-5	3.02038e-7	3.513e-4	1.44093e-5
chr19	1383526	1383608	17192825	0	+	0.597561	(0.59,1]	chr19	1412070	1	UTR5	UTR5:EXON_MRNA	NDUFS7	ENSG00000115286.20	ENST00000546283.5	protein_coding	protein_coding	protein_coding	protein_coding	76	12732	2	6.20819	6.36142	6.51465	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	61311349	61311432	12404008	0	-	0.26506	[0,0.29]	chr11	960206	1	SS5_PROX	SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	6.09612	6.36131	6.6265	5.83277e-8	1.41886e-10	3.51156e-6	2.05378e-8
chr7	159018146	159018243	8639474	0	+	0.56701	(0.53,0.59]	chr7	660126	1	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	0	88	2	6.10216	6.36115	6.62014	3.17557e-7	6.02789e-9	1.68263e-5	5.00481e-7
chrX	47585582	47585667	18687913	0	+	0.564706	(0.53,0.59]	chrX	1593566	3	CDS	CDS:UTR3:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000445623.1	protein_coding	protein_coding	protein_coding	protein_coding	7	737	2	6.17047	6.360835	6.5512	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	193302201	193302299	4649321	0	-	0.459184	(0.455,0.49]	chr3	383738	5	INTRON	INTRON	ATP13A5	ENSG00000187527.11	ENST00000342358.9:ENST00000495496.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.90053	6.356885	6.81324	4.02654e-7	3.61927e-10	2.05231e-5	4.26011e-8
chr8	124561789	124561887	10062926	0	-	0.55102	(0.53,0.59]	chr8	757146	26	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000519168.5:ENST00000325064.9:ENST00000431961.6:ENST00000523587.5:ENST00000524090.5:ENST00000523179.5:ENST00000522722.1:ENST00000522118.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	464	2	6.33406	6.356339999999999	6.37862	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	153797724	153797814	18916206	0	+	0.588889	(0.53,0.59]	chrX	1611453	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5:ENST00000447375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	356	2	6.10495	6.355895	6.60684	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	44963488	44963588	18678902	0	+	0.39	(0.36,0.39]	chrX	1592601	17	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	6.32851	6.354895	6.38128	1.07346e-8	4.75446e-9	8.24229e-7	4.42746e-7
chr11	6617044	6617114	12249958	0	-	0.642857	(0.59,1]	chr11	946859	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	108	2	6.20608	6.350345	6.49461	4.1102e-6	1.19255e-6	1.31763e-4	5.10538e-5
chr6	32155511	32155587	7118446	0	+	0.513158	(0.49,0.53]	chr6	546919	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	6.26566	6.348905	6.43215	3.67654e-8	1.33302e-8	2.61023e-6	9.93516e-7
chr16	29664466	29664557	15626154	0	+	0.604396	(0.59,1]	chr16	1239195	8	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	1232	2	6.2651	6.34834	6.43158	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	12260125	12260207	17236512	0	+	0.52439	(0.49,0.53]	chr19	1420532	1	EXON_PSEUDO	EXON_PSEUDO	CTD-2666L21.3	ENSG00000213293.4	ENST00000461223.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	133	2	4.79086	6.34644	7.90202	4.20783e-4	1e-12	0.00611538	2.25522e-10
chr11	119097948	119098043	12626628	0	-	0.526316	(0.49,0.53]	chr11	979858	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	181	2	4.93454	6.33953	7.74452	6.56872e-10	1e-12	7.19532e-8	2.46312e-10
chr3	58965759	58965859	3505655	0	+	0.31	(0.29,0.33]	chr3	307238	345	INTRON	INTRON	CFAP20DC-AS1	ENSG00000242428.6	ENST00000493123.1:ENST00000492031.6:ENST00000662588.1:ENST00000666146.1:ENST00000482372.1:ENST00000463703.6	lncRNA	lncRNA	lncRNA	lncRNA	0	90	2	5.20528	6.338955	7.47263	2.18753e-5	1e-12	5.75389e-4	2.25522e-10
chr1	161001019	161001073	1331461	0	-	0.425926	(0.42,0.455]	chr1	136455	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	152	2	4.78022	6.33572	7.89122	1.92868e-7	1e-12	1.1037e-5	2.25522e-10
chr9	105608922	105609019	10399668	0	+	0.412371	(0.39,0.42]	chr9	783577	11	UTR3	UTR3:EXON_MRNA:INTRON	FKTN	ENSG00000106692.15	ENST00000675443.1:ENST00000223528.6:ENST00000675695.1:ENST00000357998.10:ENST00000675668.1:ENST00000448551.6:ENST00000675736.1:ENST00000674563.1:ENST00000602661.6:ENST00000675232.1:ENST00000676192.1:ENST00000602526.1:ENST00000674633.1:ENST00000642537.1:ENST00000645933.1:ENST00000642177.1:ENST00000642644.1:ENST00000676371.1:ENST00000676310.1:ENST00000642952.1:ENST00000676011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	127	2	4.77106	6.33514	7.89922	3.03764e-4	1e-12	0.00472028	2.25522e-10
chr18	12986766	12986861	16764014	0	+	0.284211	[0,0.29]	chr18	1382771	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	124	2	4.9124	6.334210000000001	7.75602	5.09846e-10	1e-12	5.76958e-8	2.46312e-10
chr1	112922061	112922133	1232399	0	-	0.430556	(0.42,0.455]	chr1	120468	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000481750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	351	2	5.57903	6.333780000000001	7.08853	2.07715e-10	1e-12	2.59928e-8	2.46312e-10
chr11	75566536	75566623	12023327	0	+	0.689655	(0.59,1]	chr11	927007	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	345	2	4.8596	6.333585	7.80757	2.74952e-9	7.41744e-11	2.7589e-7	1.04474e-8
chr11	5249590	5249612	12240558	0	-	0.409091	(0.39,0.42]	chr11	946063	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBG1:CTD-2643I7.4	ENSG00000213934.9:ENSG00000284931.1	ENST00000330597.5:ENST00000642908.1:ENST00000647543.1:ENST00000648735.1:ENST00000632727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	163	2	4.81722	6.333125	7.84903	1.74741e-9	1e-12	1.71923e-7	2.46312e-10
chr14	20801697	20801772	14518859	0	-	0.573333	(0.53,0.59]	chr14	1136981	1	CDS	CDS:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	2	210	2	5.65624	6.33301	7.00978	1.90163e-10	1e-12	2.66398e-8	2.25522e-10
chr7	106092948	106093011	8977634	0	-	0.428571	(0.42,0.455]	chr7	687027	1	CDS	CDS:UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1:ENST00000460770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	170	2	4.87453	6.33245	7.79037	7.87346e-10	1e-12	9.31758e-8	2.25522e-10
chr4	7704176	7704230	4712092	0	+	0.611111	(0.59,1]	chr4	390860	1	CDS	CDS:EXON_MRNA	SORCS2	ENSG00000184985.16	ENST00000507866.6:ENST00000329016.10	protein_coding	protein_coding	protein_coding	protein_coding	16	3162	2	5.00208	6.331975	7.66187	2.29128e-12	1e-12	5.1131e-10	2.25522e-10
chr1	160357182	160357253	496802	0	+	0.521127	(0.49,0.53]	chr1	53507	3	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	6.01403	6.330715	6.6474	2.61944e-7	2.1237e-9	1.42854e-5	2.03271e-7
chr1	160999639	160999693	1331440	0	-	0.481481	(0.455,0.49]	chr1	136439	1	CDS	CDS:UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.67339	6.32901	6.98463	2.05982e-6	7.15493e-11	8.10246e-5	1.01185e-8
chr11	57389086	57389163	12394238	0	-	0.480519	(0.455,0.49]	chr11	958611	2	CDS	CDS:UTR3:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1:ENST00000529411.1:ENST00000528835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	328	2	5.8301	6.3287949999999995	6.82749	1.56882e-11	1e-12	2.60884e-9	2.46312e-10
chr12	46198683	46198743	13313543	0	-	0.433333	(0.42,0.455]	chr12	1043486	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	6.30623	6.32845	6.35067	3.37116e-8	8.53658e-9	2.19621e-6	7.38823e-7
chr4	41944859	41944926	4809391	0	+	0.328358	(0.29,0.33]	chr4	396940	2	CDS	CDS:UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6:ENST00000506794.1:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	104	2	5.3164	6.327085	7.33777	1.76169e-9	1e-12	1.8729e-7	2.25522e-10
chr19	18177139	18177215	17257707	0	+	0.644737	(0.59,1]	chr19	1425247	1	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	215	2	5.64426	6.326700000000001	7.00914	4.72152e-8	3.56464e-9	3.24728e-6	3.18066e-7
chr16	54852121	54852217	15953297	0	-	0.541667	(0.53,0.59]	chr16	1279489	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.10	ENST00000637011.1:ENST00000613942.2:ENST00000658082.1	lncRNA	lncRNA	lncRNA	lncRNA	0	87	2	5.97854	6.326295	6.67405	7.61837e-7	3.84457e-9	3.51585e-5	3.39055e-7
chr11	62630378	62630441	12409760	0	-	0.587302	(0.53,0.59]	chr11	961273	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	420	2	6.00245	6.325365	6.64828	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	225403302	225403402	1528068	0	-	0.46	(0.455,0.49]	chr1	152776	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000441022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	137	2	5.08436	6.325075	7.56579	1.48503e-8	1e-12	1.18753e-6	2.25522e-10
chr19	38920549	38920649	17561719	0	-	0.45	(0.42,0.455]	chr19	1475318	4	SS3_PROX	SS3_PROX:INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.97972	6.32439	6.66906	4.13864e-7	4.61389e-10	1.88179e-5	5.82658e-8
chr11	62634820	62634910	12409814	0	-	0.533333	(0.53,0.59]	chr11	961307	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	937	2	6.1897	6.32277	6.45584	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	125614086	125614144	12194475	0	+	0.482759	(0.455,0.49]	chr11	940784	1	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	149	2	4.79816	6.32181	7.84546	1.71652e-7	1e-12	1.00318e-5	2.25522e-10
chr11	119048308	119048370	12626459	0	-	0.580645	(0.53,0.59]	chr11	979766	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000531682.1:ENST00000543287.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	102	2	5.40497	6.320729999999999	7.23649	2.83308e-5	2.51675e-11	7.12614e-4	3.96232e-9
chrX	23679225	23679287	18615997	0	+	0.467742	(0.455,0.49]	chrX	1589674	2	CDS	CDS:EXON_MRNA	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.54484	6.3202549999999995	7.09567	4.89523e-6	2.42271e-11	1.67428e-4	3.83676e-9
chr6	30619708	30619806	7111668	0	+	0.581633	(0.53,0.59]	chr6	544912	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	85	2	6.10216	6.318735	6.53531	3.17557e-7	1.20872e-8	1.68263e-5	9.09817e-7
chr20	31549206	31549269	17748602	0	+	0.52381	(0.49,0.53]	chr20	1497864	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000464661.5:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000464173.5:ENST00000472128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	6.10288	6.31562	6.52836	1.33258e-7	5.94027e-9	8.01671e-6	4.95921e-7
chr22	26887463	26887548	18454499	0	-	0.517647	(0.49,0.53]	chr22	1574448	2	EXON_PSEUDO	EXON_PSEUDO	RP1-40G4P.1	ENSG00000231369.1	ENST00000422915.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	79	2	6.10288	6.31562	6.52836	1.33258e-7	5.94027e-9	8.01671e-6	4.95921e-7
chr17	50381625	50381723	16585109	0	-	0.510204	(0.49,0.53]	chr17	1363112	5	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.86958	6.313475	6.75737	7.54524e-7	7.98962e-10	3.49213e-5	8.57937e-8
chr14	100734703	100734796	14489608	0	+	0.548387	(0.53,0.59]	chr14	1132123	7	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	7	887	2	5.74678	6.313045000000001	6.87931	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62632654	62632745	12409786	0	-	0.527473	(0.49,0.53]	chr11	961285	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000526732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	781	2	5.97293	6.3129100000000005	6.65289	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	101212892	101212943	8953708	0	-	0.568627	(0.53,0.59]	chr7	684695	2	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000460475.1:ENST00000478264.1:ENST00000424135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	270	2	6.02662	6.312275	6.59793	4.69857e-12	1e-12	8.89928e-10	2.46312e-10
chr19	32799666	32799766	17294757	0	+	0.27	[0,0.29]	chr19	1429140	1	SS3_PROX	SS3_PROX:INTRON	TDRD12	ENSG00000173809.18	ENST00000444215.6:ENST00000647536.1	protein_coding	protein_coding	protein_coding	protein_coding	5	374	2	6.06928	6.31216	6.55504	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	44352660	44352698	16234940	0	+	0.657895	(0.59,1]	chr17	1314588	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.08232	6.31186	6.5414	8.23309e-6	9.02377e-7	2.34786e-4	4.05425e-5
chr11	57388576	57388642	12394231	0	-	0.575758	(0.53,0.59]	chr11	958609	1	CDS	CDS:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	633	2	6.27966	6.310425	6.34119	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	100580674	100580773	8951931	0	-	0.393939	(0.39,0.42]	chr7	684087	20	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	132	2	4.84764	6.30992	7.7722	1.2868e-7	1e-12	6.93987e-6	2.46312e-10
chr6	122451972	122452057	7923805	0	-	0.435294	(0.42,0.455]	chr6	606824	2	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	2	172	2	5.44408	6.308535	7.17299	3.55727e-12	2.75113e-12	6.9762e-10	6.01085e-10
chrX	300609	300708	18549168	0	+	0.333333	(0.33,0.36]	chrX	1585413	14	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	5.65172	6.30684	6.96196	6.2405e-11	5.25191e-12	8.94861e-9	1.0671e-9
chrX	65729528	65729620	18716253	0	+	0.51087	(0.49,0.53]	chrX	1596835	2	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	3	204	2	4.99566	6.303425	7.61119	1.17828e-11	1e-12	2.21522e-9	2.25522e-10
chr1	143905725	143905795	1261697	0	-	0.6	(0.59,1]	chr1	123677	2	CDS	CDS:EXON_MRNA	H3-2	ENSG00000273213.4	ENST00000650532.1:ENST00000609879.2:ENST00000392948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	126	2	5.39112	6.30094	7.21076	2.53595e-4	1.21504e-8	0.00381472	1.00312e-6
chr1	42930625	42930705	967024	0	-	0.675	(0.59,1]	chr1	101887	1	CDS	CDS:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	755	2	5.38892	6.30042	7.21192	4.51206e-12	1e-12	8.60676e-10	2.46312e-10
chr1	212309518	212309617	1481077	0	-	0.262626	[0,0.29]	chr1	149495	1	INTRON	INTRON	RP11-384C4.7	ENSG00000234915.1	ENST00000442146.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.07045	6.29948	7.52851	5.08054e-5	1e-12	0.00114377	2.25522e-10
chr17	39153766	39153866	16533725	0	-	0.57	(0.53,0.59]	chr17	1353747	1	SS5_PROX	SS5_PROX:INTRON	PLXDC1	ENSG00000161381.14	ENST00000579190.1	protein_coding	protein_coding	protein_coding	protein_coding	23	2156	2	6.1066	6.29938	6.49216	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	48058965	48059061	16253365	0	+	0.572917	(0.53,0.59]	chr17	1317132	8	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000581319.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.52766	6.29659	7.06552	1.38993e-5	1.23572e-10	3.94563e-4	1.63613e-8
chr11	75569092	75569192	12023358	0	+	0.6	(0.59,1]	chr11	927018	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000530284.5:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000525876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	552	2	5.84789	6.29537	6.74285	1.53719e-11	1e-12	2.78231e-9	2.25522e-10
chr3	128622163	128622245	4441324	0	-	0.548781	(0.53,0.59]	chr3	368991	1	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.69411	6.294265	6.89442	5.01544e-6	5.75684e-10	1.7067e-4	6.40452e-8
chr1	25301019	25301093	103750	0	+	0.540541	(0.53,0.59]	chr1	12144	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	154	2	5.90292	6.291515	6.68011	3.42488e-9	1.60154e-11	3.34439e-7	2.65691e-9
chr21	34096570	34096667	18104982	0	+	0.494845	(0.49,0.53]	chr21	1534981	14	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	155	2	4.70486	6.291365	7.87787	3.98937e-7	1e-12	2.04083e-5	2.25522e-10
chr12	132825990	132826087	13163187	0	+	0.536082	(0.53,0.59]	chr12	1029271	4	EXON_PSEUDO	EXON_PSEUDO	RPS11P5	ENSG00000232888.4	ENST00000488441.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	308	2	5.54834	6.28951	7.03068	1.57208e-10	1e-12	2.25215e-8	2.25522e-10
chr8	128040775	128040873	9615214	0	+	0.377551	(0.36,0.39]	chr8	728683	5	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.95981	6.289375	6.61894	3.15714e-7	2.89518e-10	1.49311e-5	3.86653e-8
chr13	29516191	29516246	13945237	0	-	0.545455	(0.53,0.59]	chr13	1094556	2	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	6.09613	6.289015	6.4819	3.47717e-7	1.75351e-8	1.62117e-5	1.37331e-6
chr1	40078559	40078628	954726	0	-	0.449275	(0.42,0.455]	chr1	100871	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1:ENST00000527311.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	149	2	4.69393	6.28646	7.87899	3.8764e-7	1e-12	1.99378e-5	2.25522e-10
chr1	25390831	25390915	904079	0	-	0.5	(0.49,0.53]	chr1	94026	2	CDS	CDS:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	102	2	5.16557	6.2862849999999995	7.407	6.36135e-5	1.50335e-12	0.00136069	3.22765e-10
chr5	177593712	177593775	6407877	0	+	0.52381	(0.49,0.53]	chr5	498322	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000505521.1:ENST00000507723.1:ENST00000513799.5:ENST00000507578.1:ENST00000510499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	578	2	5.76484	6.28598	6.80712	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	581498	581591	17188320	0	+	0.623656	(0.59,1]	chr19	1410776	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	4169	2	5.85511	6.284495	6.71388	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	44229906	44229976	7161480	0	+	0.614286	(0.59,1]	chr6	553787	1	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000645692.1:ENST00000647460.1:ENST00000646582.1:ENST00000645607.1:ENST00000643152.1:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	105	2	5.982	6.2843599999999995	6.58672	1.42041e-5	6.86803e-7	3.66887e-4	3.23314e-5
chr1	112917851	112917947	1232356	0	-	0.510417	(0.49,0.53]	chr1	120462	8	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	516	2	5.67049	6.283580000000001	6.89667	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	20785528	20785626	16163496	0	+	0.479592	(0.455,0.49]	chr17	1303908	10	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	471	2	5.92662	6.2829	6.63918	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	119051437	119051531	12626500	0	-	0.510638	(0.49,0.53]	chr11	979795	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	619	2	5.83707	6.281915	6.72676	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	50652937	50653037	16264444	0	+	0.5	(0.49,0.53]	chr17	1319229	89	INTRON	INTRON	ABCC3	ENSG00000108846.16	ENST00000513511.5:ENST00000427699.5:ENST00000285238.13:ENST00000502426.5:ENST00000505699.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	5.39399	6.28153	7.16907	1.71804e-5	1.64442e-11	4.72485e-4	2.71899e-9
chr11	75568730	75568759	12023351	0	+	0.482759	(0.455,0.49]	chr11	927012	1	CDS	CDS:UTR5:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000525611.5:ENST00000525876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	131	2	5.81271	6.281085	6.74946	2.83793e-10	1.87395e-11	3.79736e-8	3.04937e-9
chr3	196052112	196052184	4663162	0	-	0.513889	(0.49,0.53]	chr3	385552	2	CDS	CDS:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	12	981	2	6.0535	6.280374999999999	6.50725	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	110894326	110894401	405583	0	+	0.466667	(0.455,0.49]	chr1	39819	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	356	2	6.23163	6.279115	6.3266	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	196051941	196052041	4663160	0	-	0.46	(0.455,0.49]	chr3	385551	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	7	528	2	5.99939	6.2786100000000005	6.55783	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	9568341	9568441	18567780	0	+	0.49	(0.455,0.49]	chrX	1586476	74	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	124	2	5.66434	6.27677	6.8892	1.77804e-10	5.58293e-11	2.25984e-8	8.88137e-9
chr12	7925843	7925895	13193227	0	-	0.480769	(0.455,0.49]	chr12	1033501	1	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000479059.3:ENST00000490763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.84701	6.27616	6.70531	5.98588e-7	9.72532e-10	2.85128e-5	1.02291e-7
chr1	42930705	42930785	967025	0	-	0.5875	(0.53,0.59]	chr1	101887	2	CDS	CDS:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	613	2	6.18756	6.27595	6.36434	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	128625873	128625942	4441364	0	-	0.449275	(0.42,0.455]	chr3	369001	1	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	5.04712	6.274715	7.50231	1.96283e-8	1e-12	1.51544e-6	2.25522e-10
chr8	22412110	22412206	9224935	0	+	0.520833	(0.49,0.53]	chr8	705679	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000517370.1	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.24579	6.273910000000001	7.30203	4.073e-5	4.37028e-12	9.64741e-4	8.36835e-10
chr12	63823204	63823302	12916678	0	+	0.520408	(0.49,0.53]	chr12	1006815	13	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	657	2	5.89402	6.273665	6.65331	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	140655579	140655679	9109667	0	-	0.59	(0.53,0.59]	chr7	695259	142	INTRON	INTRON	DENND2A	ENSG00000146966.13	ENST00000489552.1	protein_coding	protein_coding	protein_coding	protein_coding	10	985	2	6.17963	6.267415	6.3552	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	21351574	21351674	14521124	0	-	0.54	(0.53,0.59]	chr14	1137303	2	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	6.17302	6.26405	6.35508	1.98983e-7	4.77539e-8	1.01095e-5	3.2714e-6
chr4	87382308	87382362	5518462	0	-	0.537037	(0.53,0.59]	chr4	441970	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.93486	6.26364	6.59242	1.0295e-6	7.57932e-9	4.52516e-5	6.12104e-7
chr11	71441297	71441368	12444468	0	-	0.577465	(0.53,0.59]	chr11	966993	2	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000534701.1:ENST00000683874.1:ENST00000526780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	304	2	4.43709	6.261705000000001	8.08632	4.39632e-11	1e-12	6.56029e-9	2.46312e-10
chr5	69470051	69470136	6020975	0	+	0.494118	(0.49,0.53]	chr5	471566	3	EXON_PSEUDO	EXON_PSEUDO	RPS27P14	ENSG00000244717.1	ENST00000496370.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	80	2	5.76456	6.260965000000001	6.75737	1.57714e-6	7.98962e-10	6.4504e-5	8.57937e-8
chr17	20785331	20785430	16163494	0	+	0.515152	(0.49,0.53]	chr17	1303908	8	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	177	2	4.30878	6.260949999999999	8.21312	7.12421e-6	1e-12	2.28404e-4	2.25522e-10
chr20	1277656	1277756	17646615	0	+	0.51	(0.49,0.53]	chr20	1491668	105	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.77064	6.260935	6.75123	1.94063e-6	5.44997e-10	6.9799e-5	6.72785e-8
chr1	38710204	38710302	144551	0	+	0.408163	(0.39,0.42]	chr1	18021	14	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	75	2	5.74439	6.260355000000001	6.77632	7.99187e-7	4.40326e-10	3.66071e-5	5.06835e-8
chr2	46907862	46907962	2629868	0	-	0.43	(0.42,0.455]	chr2	236801	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1:ENST00000409207.5:ENST00000470873.1:ENST00000409973.5:ENST00000409147.1:ENST00000409218.5:ENST00000412438.5:ENST00000434262.1:ENST00000477791.5:ENST00000479225.1:ENST00000417180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	129	2	5.04712	6.258595	7.47007	1.96283e-8	1e-12	1.51544e-6	2.25522e-10
chr2	47691069	47691157	2633794	0	-	0.477273	(0.455,0.49]	chr2	237030	5	EXON_PSEUDO	EXON_PSEUDO	AC079250.1	ENSG00000230979.3	ENST00000456046.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	170	2	5.52574	6.258195	6.99065	2.62328e-11	1.35525e-12	4.55093e-9	2.95329e-10
chr5	139578387	139578487	6250074	0	+	0.45	(0.42,0.455]	chr5	487080	156	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	120	2	5.59152	6.256425	6.92133	1.546e-10	1.0507e-10	1.99104e-8	1.56759e-8
chr12	124814269	124814337	13600520	0	-	0.602941	(0.59,1]	chr12	1071729	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.76827	6.25626	6.74425	5.97759e-5	1.52822e-7	0.00130766	8.06807e-6
chr17	18039407	18039464	16148540	0	+	0.473684	(0.455,0.49]	chr17	1301467	1	UTR5	UTR5:EXON_MRNA	GID4	ENSG00000141034.10	ENST00000268719.9:ENST00000376345.3	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.95213	6.25504	6.55795	2.72823e-7	3.59716e-9	1.4763e-5	3.19904e-7
chr17	1777266	1777346	16083833	0	+	0.6875	(0.59,1]	chr17	1293258	2	CDS	CDS:EXON_MRNA	SERPINF1	ENSG00000132386.11	ENST00000254722.9:ENST00000572517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	112	2	5.55681	6.254894999999999	6.95298	1.60495e-4	3.81194e-8	0.00286914	2.44336e-6
chr1	161469769	161469869	1333894	0	-	0.7	(0.59,1]	chr1	136938	289	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	61	9385	2	6.20755	6.254580000000001	6.30161	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	14375735	14375819	18163712	0	-	0.488095	(0.455,0.49]	chr21	1542405	2	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	6.18563	6.254085	6.32254	4.30535e-8	2.62373e-8	2.9886e-6	1.77777e-6
chrX	47208275	47208370	18686848	0	+	0.526316	(0.49,0.53]	chrX	1593238	15	INTRON	INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.46274	6.253595000000001	7.04445	1.13094e-5	5.5223e-11	3.3464e-4	8.02095e-9
chr5	168616903	168616996	6369410	0	+	0.602151	(0.59,1]	chr5	494770	7	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	327	2	4.99276	6.25153	7.5103	1.48455e-9	6.33772e-10	1.6125e-7	6.96634e-8
chr19	14565771	14565871	17243478	0	+	0.63	(0.59,1]	chr19	1422067	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000597607.5:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	249	2	6.23477	6.250920000000001	6.26707	5.29741e-6	2.86614e-11	1.78149e-4	4.4541e-9
chr2	61355575	61355675	2689148	0	-	0.28	[0,0.29]	chr2	240257	45	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	5.29182	6.249205	7.20659	1.90942e-9	1e-12	1.86131e-7	2.46312e-10
chr11	60920936	60920988	11967036	0	+	0.576923	(0.53,0.59]	chr11	916460	2	CDS	CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	6.01491	6.248405	6.4819	6.18274e-7	1.75351e-8	2.65059e-5	1.37331e-6
chr7	101216409	101216477	8953751	0	-	0.441176	(0.42,0.455]	chr7	684717	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000478082.5:ENST00000424135.5:ENST00000489927.1:ENST00000414785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	6.22675	6.2479949999999995	6.26924	4.53551e-8	2.47854e-8	2.82715e-6	1.84654e-6
chr8	86504080	86504178	9457232	0	+	0.459184	(0.455,0.49]	chr8	720187	6	EXON_PSEUDO	EXON_PSEUDO	SLC2A3P4	ENSG00000254088.1	ENST00000521259.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	75	2	5.84701	6.247585	6.64816	5.98588e-7	1.62448e-9	2.85128e-5	1.61468e-7
chr11	71435819	71435896	12444405	0	-	0.636364	(0.59,1]	chr11	966974	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	201	2	5.07951	6.2462599999999995	7.41301	1.95312e-7	2.97012e-9	9.96651e-6	2.94996e-7
chr19	44908620	44908708	17349674	0	+	0.75	(0.59,1]	chr19	1439242	2	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000446996.5:ENST00000252486.9:ENST00000434152.5:ENST00000425718.1	protein_coding	protein_coding	protein_coding	protein_coding	2	321	2	5.70497	6.24474	6.78451	1.17453e-7	4.76165e-11	6.41673e-6	7.72189e-9
chr11	62629813	62629885	12409751	0	-	0.527778	(0.49,0.53]	chr11	961265	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	342	2	5.54177	6.24466	6.94755	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	71818616	71818670	11563233	0	-	0.555556	(0.53,0.59]	chr10	879965	1	CDS	CDS:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000495196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	532	2	5.19535	6.244225	7.2931	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	102240251	102240351	14792897	0	-	0.55	(0.53,0.59]	chr14	1159152	4	SS5_PROX	SS5_PROX:INTRON	MOK	ENSG00000080823.23	ENST00000559138.5:ENST00000559838.5:ENST00000557823.5:ENST00000521766.5:ENST00000523485.5:ENST00000517966.5:ENST00000519569.5:ENST00000361847.7:ENST00000518686.5:ENST00000522874.5:ENST00000524370.5:ENST00000523231.5:ENST00000520266.5:ENST00000519058.5:ENST00000524214.5:ENST00000524120.5:ENST00000521388.5:ENST00000562292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	3433	2	5.37534	6.243639999999999	7.11194	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	75566710	75566797	12023329	0	+	0.643678	(0.59,1]	chr11	927007	4	CDS	CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	268	2	4.86698	6.2435	7.62002	2.53802e-8	3.12679e-10	1.88455e-6	3.74873e-8
chr14	67685014	67685109	14683423	0	-	0.484211	(0.455,0.49]	chr14	1149631	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000553582.5:ENST00000554493.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	127	2	5.08436	6.243475	7.40259	1.48503e-8	1.06704e-12	1.18753e-6	2.39402e-10
chrX	48528295	48528357	18691857	0	+	0.516129	(0.49,0.53]	chrX	1594148	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	223	2	6.14502	6.242789999999999	6.34056	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	101204103	101204201	8953612	0	-	0.581633	(0.53,0.59]	chr7	684645	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP46	ENSG00000213394.3	ENST00000428316.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	80	2	6.10216	6.24198	6.3818	3.17557e-7	4.09818e-8	1.68263e-5	2.59819e-6
chr4	139698389	139698471	5671437	0	-	0.536585	(0.53,0.59]	chr4	450574	4	EXON_PSEUDO	EXON_PSEUDO	H3P16	ENSG00000178458.5	ENST00000230495.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	82	2	5.8838	6.241135	6.59847	1.51824e-6	6.77695e-9	5.67784e-5	6.05701e-7
chr11	71437773	71437858	12444426	0	-	0.635294	(0.59,1]	chr11	966980	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1:ENST00000682880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	202	2	5.54047	6.24072	6.94097	7.38789e-8	7.65892e-9	4.77306e-6	6.17817e-7
chr19	53874301	53874398	17388667	0	+	0.618557	(0.59,1]	chr19	1446781	8	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000391769.2:ENST00000391768.2	protein_coding	protein_coding	protein_coding	protein_coding	1	205	2	5.48998	6.238935	6.98789	3.00484e-8	1.61025e-8	1.99911e-6	1.27882e-6
chr1	38710302	38710400	144552	0	+	0.428571	(0.42,0.455]	chr1	18021	15	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	144	2	4.64877	6.238894999999999	7.82902	5.54135e-7	1e-12	2.69297e-5	2.25522e-10
chr1	38710106	38710204	144550	0	+	0.5	(0.49,0.53]	chr1	18021	13	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	189	2	5.78251	6.2388449999999995	6.69518	9.10937e-10	1e-12	1.0553e-7	2.25522e-10
chr11	107791372	107791467	12584845	0	-	0.357895	(0.33,0.36]	chr11	975961	5	UTR3	UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	6.12319	6.23883	6.35447	2.40967e-8	1.00411e-8	1.80206e-6	7.78481e-7
chr11	57420971	57421064	12394571	0	-	0.44086	(0.42,0.455]	chr11	958672	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	264	2	6.00621	6.23761	6.46901	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	2396627	2396677	11764978	0	+	0.56	(0.53,0.59]	chr11	900176	1	CDS	CDS:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	143	2	5.6183	6.236319999999999	6.85434	7.63084e-10	2.43197e-10	9.03558e-8	2.99496e-8
chr1	224371282	224371352	728743	0	+	0.457143	(0.455,0.49]	chr1	73639	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	127	2	5.05154	6.23565	7.41976	1.98728e-8	1e-12	1.52826e-6	2.25522e-10
chr21	37486614	37486708	18117134	0	+	0.351064	(0.33,0.36]	chr21	1536268	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643355.1:ENST00000643808.1:ENST00000644367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	150	2	4.29439	6.23553	8.17667	9.429e-6	1e-12	2.89287e-4	2.25522e-10
chr20	1277556	1277656	17646614	0	+	0.52	(0.49,0.53]	chr20	1491668	104	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	6.05534	6.233635	6.41193	2.57847e-7	1.09526e-8	1.25763e-5	9.21346e-7
chr1	161447589	161447689	1333672	0	-	0.7	(0.59,1]	chr1	136938	67	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	73	10296	2	5.83105	6.232145	6.63324	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	7922956	7923024	13193194	0	-	0.382353	(0.36,0.39]	chr12	1033489	3	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	148	2	5.4227	6.231195	7.03969	3.32501e-12	3.08265e-12	7.11582e-10	6.15615e-10
chr10	46010222	46010320	11470972	0	-	0.520408	(0.49,0.53]	chr10	874843	1	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.65129	6.230325000000001	6.80936	3.38975e-6	4.98748e-10	1.23071e-4	5.66789e-8
chr10	71825836	71825893	11563313	0	-	0.385965	(0.36,0.39]	chr10	879997	1	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	7	528	2	5.86025	6.229265	6.59828	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	629506	629599	823323	0	-	0.462366	(0.455,0.49]	chr1	81475	1	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	253	17377	2	6.16688	6.228619999999999	6.29036	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	42125513	42125603	16545937	0	-	0.311111	(0.29,0.33]	chr17	1356948	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	98	2	5.6158	6.22852	6.84124	7.87047e-11	1.50921e-11	1.10364e-8	2.74117e-9
chr6	27810243	27810313	7105135	0	+	0.571429	(0.53,0.59]	chr6	543456	2	CDS	CDS:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	3	221	2	4.49433	6.227805	7.96128	3.01117e-9	1e-12	2.74652e-7	2.46312e-10
chr15	33043569	33043669	15198699	0	-	0.4	(0.39,0.42]	chr15	1196354	351	INTRON	INTRON	FMN1	ENSG00000248905.10	ENST00000616417.5:ENST00000334528.13:ENST00000561249.5:ENST00000672206.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.67856	6.22744	6.77632	1.29189e-6	4.40326e-10	5.48279e-5	5.06835e-8
chr9	133123939	133124039	10879217	0	-	0.47	(0.455,0.49]	chr9	825573	28	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	4.59599	6.22572	7.85545	9.38471e-7	1e-12	3.79261e-5	2.46312e-10
chr11	62888169	62888239	11974492	0	+	0.514286	(0.49,0.53]	chr11	918076	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000542922.5:ENST00000539507.1:ENST00000542793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	543	2	5.7885	6.22533	6.66216	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	29056801	29056901	3380715	0	+	0.33	(0.29,0.33]	chr3	294770	807	INTRON	INTRON	RP11-9J18.1:RBMS3	ENSG00000283563.1:ENSG00000144642.22	ENST00000635992.1:ENST00000636680.2:ENST00000636900.1:ENST00000636582.1:ENST00000637842.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.61051	6.223065	6.83562	1.39039e-6	8.11906e-11	5.80782e-5	1.13168e-8
chr3	119635525	119635614	4399825	0	-	0.58427	(0.53,0.59]	chr3	364814	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P7	ENSG00000242052.1	ENST00000495649.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	83	2	5.74558	6.22292	6.70026	3.61407e-6	3.08274e-9	1.29307e-4	2.80081e-7
chrX	119240386	119240464	18840441	0	+	0.525641	(0.49,0.53]	chrX	1605471	2	CDS	CDS:EXON_MRNA:INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	2	168	2	5.30945	6.222275	7.1351	1.57069e-11	1.34585e-11	2.61069e-9	2.47893e-9
chr12	287500	287599	13166626	0	-	0.333333	(0.33,0.36]	chr12	1029842	9	INTRON	INTRON	KDM5A	ENSG00000073614.13	ENST00000399788.7:ENST00000540838.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	123	2	6.21105	6.22187	6.23269	9.01516e-9	1e-12	7.74588e-7	2.25522e-10
chrX	154435149	154435186	18917908	0	+	0.432432	(0.42,0.455]	chrX	1611921	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.20268	6.221775	7.24087	3.59669e-5	6.86562e-12	8.71318e-4	1.24302e-9
chr14	46651369	46651458	14603888	0	-	0.550562	(0.53,0.59]	chr14	1143802	3	CDS	CDS:EXON_MRNA	RPL10L	ENSG00000165496.5	ENST00000298283.5	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.64073	6.22067	6.80061	7.00135e-6	1.30714e-9	2.25852e-4	1.32956e-7
chr1	112917658	112917755	1232354	0	-	0.360825	(0.36,0.39]	chr1	120462	6	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	301	2	5.10086	6.220515	7.34017	1.77225e-12	1e-12	4.07682e-10	2.25522e-10
chr2	62146297	62146392	1844797	0	+	0.515789	(0.49,0.53]	chr2	175130	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COMMD1	ENSG00000173163.10	ENST00000427417.1:ENST00000458337.5:ENST00000444166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.76456	6.220125	6.67569	1.57714e-6	1.65563e-9	6.4504e-5	1.6405e-7
chr15	82540428	82540459	15412573	0	-	0.516129	(0.49,0.53]	chr15	1218672	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPS17:RP11-152F13.10	ENSG00000182774.13:ENSG00000260836.2	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	24	1990	2	5.92055	6.220075	6.5196	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	25303390	25303459	103776	0	+	0.666667	(0.59,1]	chr1	12154	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	98	2	6.14553	6.218075	6.29062	5.79142e-6	3.87694e-6	1.75119e-4	1.37159e-4
chr19	44909061	44909150	17349679	0	+	0.696629	(0.59,1]	chr19	1439242	7	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000252486.9	protein_coding	protein_coding	protein_coding	protein_coding	1	201	2	4.88606	6.21561	7.54516	6.99048e-7	1.15518e-9	2.94405e-5	1.29794e-7
chr12	50925337	50925436	12875783	0	+	0.515152	(0.49,0.53]	chr12	1000522	3	CDS	CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000550502.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	162	2	5.14511	6.21444	7.28377	6.83449e-11	5.25036e-12	1.06227e-8	9.83374e-10
chr4	88090347	88090446	5521190	0	-	0.363636	(0.36,0.39]	chr4	442141	3	UTR3	UTR3:EXON_MRNA	ABCG2	ENSG00000118777.12	ENST00000650821.1:ENST00000515655.5:ENST00000237612.8	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	4.58747	6.213565	7.83966	6.55819e-4	1e-12	0.00860229	2.25522e-10
chr9	136007432	136007531	10887743	0	-	0.59596	(0.59,1]	chr9	826878	10	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	200	2	4.90476	6.21339	7.52202	6.19423e-7	1.36474e-9	2.65225e-5	1.49872e-7
chr1	632643	632743	823357	0	-	0.33	(0.29,0.33]	chr1	81483	2	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	RP11-206L10.17:ENSG00000278791	ENSG00000230021.10:ENSG00000278791.1	ENST00000419394.2:ENST00000440196.3:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000621981.1	miRNA	processed_transcript	miRNA:transcribed_processed_pseudogene	processed_transcript:primary_miRNA	208	9783	2	5.91695	6.212595	6.50824	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	35059711	35059801	10638092	0	-	0.566667	(0.53,0.59]	chr9	804509	4	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	6.17302	6.212540000000001	6.25206	1.98983e-7	1.05059e-7	1.01095e-5	6.55238e-6
chr4	128862846	128862945	5109885	0	+	0.535354	(0.53,0.59]	chr4	414266	7	UTR3	UTR3:EXON_MRNA:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	5.54663	6.212115000000001	6.8776	6.21674e-10	4.71653e-10	7.55826e-8	5.38983e-8
chr14	53278824	53278924	14288658	0	+	0.56	(0.53,0.59]	chr14	1117134	391	INTRON	INTRON	AL163953.3	ENSG00000237356.7	ENST00000663291.1:ENST00000666968.1:ENST00000656426.1:ENST00000454942.5:ENST00000666730.1:ENST00000659459.1:ENST00000667619.1:ENST00000663444.1:ENST00000456100.6:ENST00000435322.1:ENST00000661514.1:ENST00000665016.1:ENST00000668539.1:ENST00000668546.1:ENST00000663120.1:ENST00000655713.1:ENST00000653852.1:ENST00000648066.1	lncRNA	lncRNA	lncRNA	lncRNA	2	292	2	5.36096	6.211565	7.06217	2.43109e-9	1e-12	2.47944e-7	2.25522e-10
chr10	71829010	71829077	11563349	0	-	0.61194	(0.59,1]	chr10	880009	3	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	5	850	2	6.057	6.211355	6.36571	2.85816e-12	1e-12	6.19929e-10	2.25522e-10
chr20	37199137	37199225	17777560	0	+	0.568182	(0.53,0.59]	chr20	1502006	2	CDS	CDS:EXON_MRNA:INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	327	2	5.55212	6.21107	6.87002	2.16149e-12	1e-12	4.8546e-10	2.25522e-10
chr6	49612396	49612465	7729672	0	-	0.434783	(0.42,0.455]	chr6	592956	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000646874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	573	2	4.88552	6.210789999999999	7.53606	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	5545415	5545514	16422546	0	-	0.454545	(0.42,0.455]	chr17	1338400	30	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000572272.6:ENST00000571451.6:ENST00000269280.8:ENST00000619223.4:ENST00000617618.4:ENST00000345221.7:ENST00000354411.7:ENST00000577119.5:ENST00000571307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.88508	6.21061	6.53614	8.1674e-7	1.60905e-9	3.36299e-5	1.7333e-7
chr1	120571119	120571191	434528	0	+	0.388889	(0.36,0.39]	chr1	43013	1	EXON_SMALL	EXON_SMALL	U2	ENSG00000273694.1	ENST00000618978.1	snRNA	snRNA	snRNA	snRNA	1	105	2	5.96398	6.20828	6.45258	5.80288e-9	1.22968e-12	4.87132e-7	2.96934e-10
chr11	80653614	80653708	12489905	0	-	0.446809	(0.42,0.455]	chr11	971286	3	EXON_PSEUDO	EXON_PSEUDO	ARL6IP1P3	ENSG00000255014.1	ENST00000524544.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	81	2	5.44441	6.20633	6.96825	8.23077e-6	9.91354e-11	2.56136e-4	1.34998e-8
chr1	37556414	37556499	142353	0	+	0.529412	(0.49,0.53]	chr1	17757	3	EXON_PSEUDO	EXON_PSEUDO	RP3-423B22.5	ENSG00000237749.4	ENST00000423216.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	76	2	5.76456	6.20598	6.6474	1.57714e-6	2.1237e-9	6.4504e-5	2.03271e-7
chr1	25301602	25301686	103757	0	+	0.547619	(0.53,0.59]	chr1	12148	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	78	2	6.06212	6.205575	6.34903	4.23179e-7	5.2841e-8	2.1371e-5	3.2354e-6
chr6	44229723	44229791	7161476	0	+	0.529412	(0.49,0.53]	chr6	553783	3	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000645692.1:ENST00000642777.1:ENST00000647460.1:ENST00000646582.1:ENST00000645607.1:ENST00000643152.1:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	163	2	4.95304	6.204005	7.45497	5.49934e-10	1e-12	6.17835e-8	2.46312e-10
chr11	71438878	71438946	12444440	0	-	0.617647	(0.59,1]	chr11	966986	1	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1:ENST00000682880.1:ENST00000527316.5:ENST00000534701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	214	2	5.88927	6.203735	6.5182	1.03659e-6	5.59319e-10	4.55345e-5	6.2624e-8
chr1	161592185	161592242	501293	0	+	0.508772	(0.49,0.53]	chr1	54314	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000473530.6:ENST00000611236.1:ENST00000467903.5	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	0	75	2	5.81803	6.20357	6.58911	1.08721e-6	3.52807e-9	4.73591e-5	3.14964e-7
chr6	33305087	33305187	7669260	0	-	0.59	(0.53,0.59]	chr6	587575	2	CDS	CDS:EXON_MRNA:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	281	2	4.87265	6.203125	7.5336	1.75282e-12	1.27753e-12	3.72655e-10	3.06363e-10
chr1	146987702	146987785	453462	0	+	0.445783	(0.42,0.455]	chr1	45028	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF12	ENSG00000268043.7	ENST00000617931.4:ENST00000617844.4:ENST00000611443.4:ENST00000617614.4:ENST00000579935.8:ENST00000439206.6:ENST00000617864.3:ENST00000613714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.83533	6.202935	6.57054	1.15767e-6	1.16955e-9	4.52486e-5	1.307e-7
chr9	91905081	91905181	10734851	0	-	0.44	(0.42,0.455]	chr9	812027	180	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.83533	6.202935	6.57054	1.15767e-6	1.16955e-9	4.52486e-5	1.307e-7
chr3	128067420	128067516	3725162	0	+	0.541667	(0.53,0.59]	chr3	318503	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	291	2	5.33975	6.20096	7.06217	2.93156e-9	1e-12	2.91582e-7	2.25522e-10
chrX	120447932	120448025	19196245	0	-	0.451613	(0.42,0.455]	chrX	1631997	2	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	222	2	5.6614	6.19899	6.73658	5.09471e-11	1e-12	8.17946e-9	2.25522e-10
chr15	51282707	51282807	15279343	0	-	0.52	(0.49,0.53]	chr15	1205535	28	INTRON	INTRON	CYP19A1	ENSG00000137869.15	ENST00000396402.6:ENST00000396404.8:ENST00000439712.6:ENST00000557934.5:ENST00000561075.5:ENST00000558328.5:ENST00000453807.6:ENST00000557858.5:ENST00000559980.5:ENST00000405011.6:ENST00000559646.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	89	2	5.24579	6.19741	7.14903	4.073e-5	2.00208e-11	9.64741e-4	3.23824e-9
chr11	60921773	60921870	11967046	0	+	0.659794	(0.59,1]	chr11	916466	1	CDS	CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	2	284	2	5.38977	6.197405	7.00504	2.67195e-8	5.43952e-10	1.80483e-6	6.7229e-8
chr6	26196743	26196839	7647196	0	-	0.40625	(0.39,0.42]	chr6	582539	13	UTR3	UTR3:EXON_MRNA	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	130	2	4.69349	6.196915	7.70034	3.85767e-7	1e-12	1.98905e-5	2.25522e-10
chr1	40074121	40074183	954677	0	-	0.532258	(0.53,0.59]	chr1	100851	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1:ENST00000527311.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	141	2	5.68658	6.1964500000000005	6.70632	2.74292e-9	1.28277e-10	2.75444e-7	1.68881e-8
chr1	41155335	41155434	957840	0	-	0.383838	(0.36,0.39]	chr1	101317	22	INTRON	INTRON	SCMH1	ENSG00000010803.16	ENST00000397171.6:ENST00000361191.9:ENST00000361705.7:ENST00000402904.6:ENST00000372597.5:ENST00000372596.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000456518.3	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.77516	6.19598	6.6168	5.05798e-7	1.34372e-9	2.49522e-5	1.36438e-7
chr6	32168888	32168984	7664648	0	-	0.53125	(0.53,0.59]	chr6	586094	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.5853	6.1929549999999995	6.80061	9.83355e-6	1.30714e-9	2.98194e-4	1.32956e-7
chr15	71341619	71341712	15364362	0	-	0.451613	(0.42,0.455]	chr15	1213733	6	EXON_PSEUDO	EXON_PSEUDO	RP11-592N21.1	ENSG00000212664.5	ENST00000498103.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	82	2	5.36824	6.190965	7.01369	1.33083e-5	6.41929e-11	3.81624e-4	9.18234e-9
chr7	26212507	26212607	8183123	0	+	0.39	(0.36,0.39]	chr7	624437	4	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	7	447	2	5.81668	6.188705000000001	6.56073	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	38745747	38745811	18511672	0	-	0.546875	(0.53,0.59]	chr22	1580347	2	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000430185.5:ENST00000438058.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.12301	6.18865	7.25429	1.2852e-4	2.12673e-11	0.00241206	3.41926e-9
chr11	119097206	119097272	12626618	0	-	0.424242	(0.42,0.455]	chr11	979853	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	6.18296	6.187614999999999	6.19227	8.32224e-8	3.5781e-8	4.76997e-6	2.56228e-6
chr19	14565201	14565290	17243470	0	+	0.595506	(0.59,1]	chr19	1422060	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	265	2	4.40886	6.18682	7.96478	5.7599e-7	2.1634e-11	2.76954e-5	3.47341e-9
chr7	20140745	20140845	8714883	0	-	0.38	(0.36,0.39]	chr7	665363	62	UTR3	UTR3:EXON_MRNA	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	4.98475	6.18601	7.38727	3.80046e-8	1e-12	2.43689e-6	2.46312e-10
chr3	120601110	120601193	3693650	0	+	0.409639	(0.39,0.42]	chr3	315846	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NDUFB4	ENSG00000065518.8	ENST00000485064.1:ENST00000184266.3:ENST00000492739.1:ENST00000461682.1:ENST00000491335.1:ENST00000496588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.92558	6.18487	6.44416	2.00458e-7	8.46338e-9	1.13771e-5	6.69855e-7
chr1	91643788	91643886	350548	0	+	0.367347	(0.36,0.39]	chr1	34388	14	EXON_PSEUDO	EXON_PSEUDO	HSP90B3P	ENSG00000203914.4	ENST00000415545.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	124	2	4.42503	6.183674999999999	7.94232	0.00133228	1e-12	0.0144372	2.25522e-10
chr1	21839919	21840017	890801	0	-	0.510204	(0.49,0.53]	chr1	92302	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	172	2	5.53491	6.183165	6.83142	2.582e-10	1.47682e-12	3.48617e-8	3.1844e-10
chr2	20037376	20037438	2539771	0	-	0.435484	(0.42,0.455]	chr2	228423	2	CDS	CDS:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	3	199	2	4.13685	6.181665000000001	8.22648	4.83718e-8	1e-12	3.30939e-6	2.25522e-10
chr19	53874205	53874301	17388666	0	+	0.625	(0.59,1]	chr19	1446781	7	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000391769.2:ENST00000391768.2	protein_coding	protein_coding	protein_coding	protein_coding	2	258	2	4.90772	6.18145	7.45518	1.90013e-8	1.07491e-9	1.47322e-6	1.11578e-7
chrX	47586591	47586691	18687925	0	+	0.65	(0.59,1]	chrX	1593572	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000218388.9:ENST00000377017.5:ENST00000445623.1	protein_coding	protein_coding	protein_coding	protein_coding	8	1138	2	5.82436	6.181015	6.53767	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	51060127	51060226	12876172	0	+	0.515152	(0.49,0.53]	chr12	1000594	8	UTR3	UTR3:EXON_MRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000552645.5:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	2	174	2	5.58321	6.180835	6.77846	4.23567e-10	1e-12	5.39328e-8	2.25522e-10
chr8	97851396	97851474	9507214	0	+	0.576923	(0.53,0.59]	chr8	722768	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.79528	6.179715	6.56415	2.61912e-6	9.5574e-9	9.89086e-5	7.4729e-7
chr1	110892438	110892533	405562	0	+	0.473684	(0.455,0.49]	chr1	39812	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000471220.5:ENST00000476408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	259	2	5.72684	6.17908	6.63132	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	17056502	17056598	17494181	0	-	0.354167	(0.33,0.36]	chr19	1466904	1	INTRON	INTRON	HAUS8	ENSG00000131351.15	ENST00000253669.10:ENST00000448593.6:ENST00000593360.1:ENST00000598517.5:ENST00000601564.5:ENST00000595958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	6.12319	6.178615000000001	6.23404	2.79464e-8	2.40967e-8	1.8758e-6	1.80206e-6
chr19	14565743	14565771	17243477	0	+	0.642857	(0.59,1]	chr19	1422066	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000597607.5:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.95267	6.17633	6.39999	2.38682e-5	1.31939e-6	6.18922e-4	5.06228e-5
chr22	49449210	49449310	18542356	0	-	0.41	(0.39,0.42]	chr22	1583944	76	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.52626	6.1757100000000005	6.82516	7.67816e-6	5.56682e-11	2.20857e-4	8.8625e-9
chr6	27808602	27808701	7105131	0	+	0.414141	(0.39,0.42]	chr6	543453	1	UTR3	UTR3:EXON_MRNA	H2AC13	ENSG00000196747.4	ENST00000358739.4	protein_coding	protein_coding	protein_coding	protein_coding	3	177	2	5.08361	6.1754	7.26719	4.62219e-12	1e-12	8.78801e-10	2.46312e-10
chr6	27865747	27865798	7105347	0	+	0.431373	(0.42,0.455]	chr6	543490	1	UTR3	UTR3:EXON_MRNA	H2AC16	ENSG00000276903.2	ENST00000613174.2	protein_coding	protein_coding	protein_coding	protein_coding	1	183	2	5.58564	6.17455	6.76346	3.24669e-6	1e-12	1.18495e-4	2.25522e-10
chr6	122446773	122446850	7923748	0	-	0.38961	(0.36,0.39]	chr6	606810	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	223	2	5.72383	6.17419	6.62455	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	136042944	136043044	10888103	0	-	0.51	(0.49,0.53]	chr9	826903	236	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.4156	6.17372	6.93184	1.84143e-5	9.9329e-11	4.53637e-4	1.4926e-8
chr5	80500249	80500331	6057190	0	+	0.426829	(0.42,0.455]	chr5	475428	3	SS5_PROX	SS5_PROX:INTRON	FAM151B	ENSG00000152380.10	ENST00000502608.5:ENST00000511718.5:ENST00000282226.5:ENST00000507084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	142	2	4.50412	6.1729	7.84168	1.67683e-6	1e-12	6.81279e-5	2.25522e-10
chr19	38307427	38307521	17559395	0	-	0.574468	(0.53,0.59]	chr19	1474567	1	CDS	CDS:EXON_MRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	373	2	5.37555	6.17242	6.96929	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	111182877	111182957	406200	0	+	0.3375	(0.33,0.36]	chr1	39902	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1:ENST00000483427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.80643	6.170835	6.53524	3.38594e-7	2.01817e-9	1.77741e-5	1.95043e-7
chr4	118204213	118204313	5070850	0	+	0.43	(0.42,0.455]	chr4	411643	602	INTRON	INTRON	NDST3	ENSG00000164100.9	ENST00000296499.6	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.36824	6.168245000000001	6.96825	1.33083e-5	9.91354e-11	3.81624e-4	1.34998e-8
chrX	40591233	40591293	18667474	0	+	0.583333	(0.53,0.59]	chrX	1591844	1	CDS	CDS:UTR5:EXON_MRNA	ATP6AP2	ENSG00000182220.15	ENST00000436783.6:ENST00000636409.1:ENST00000487051.2:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000637954.1:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.88982	6.1675	6.44518	1.39814e-6	2.49042e-8	5.82056e-5	1.70299e-6
chr5	40834538	40834606	6552963	0	-	0.573529	(0.53,0.59]	chr5	507741	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000509877.5:ENST00000507642.5:ENST00000504562.1:ENST00000508493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	1615	2	5.88282	6.166285	6.44975	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	80651747	80651845	6667613	0	-	0.479592	(0.455,0.49]	chr5	514741	18	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	509	2	5.22638	6.1599699999999995	7.09356	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	87703342	87703437	19141897	0	-	0.568421	(0.53,0.59]	chrX	1627927	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	77	2	5.84332	6.159585	6.47585	1.90853e-6	1.951e-8	7.59317e-5	1.37715e-6
chr6	34744374	34744473	7125488	0	+	0.535354	(0.53,0.59]	chr6	548353	3	EXON_PSEUDO	EXON_PSEUDO	RP3-375P9.2	ENSG00000217130.1	ENST00000408001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	76	2	5.93486	6.158329999999999	6.3818	1.0295e-6	4.09818e-8	4.52516e-5	2.59819e-6
chr5	82276410	82276464	6672997	0	-	0.444444	(0.42,0.455]	chr5	515064	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5:ENST00000503605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	453	2	6.13442	6.155905000000001	6.17739	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	75134884	75134984	14709075	0	-	0.43	(0.42,0.455]	chr14	1152526	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1:ENST00000555873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	150	2	5.04884	6.154355000000001	7.25987	2.05334e-10	1.06848e-12	2.57596e-8	2.61331e-10
chr1	239052747	239052825	1569138	0	-	0.358974	(0.33,0.36]	chr1	157270	1	EXON_PSEUDO	EXON_PSEUDO	RP11-307O1.1	ENSG00000227854.1	ENST00000422215.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	61	2	5.80643	6.153639999999999	6.50085	3.38594e-7	2.75564e-9	1.77741e-5	2.54269e-7
chr19	34399936	34400036	17300566	0	+	0.54	(0.53,0.59]	chr19	1429896	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	271	2	4.81655	6.15277	7.48899	3.16991e-12	1.98863e-12	6.28185e-10	4.50511e-10
chr18	31547136	31547235	16809171	0	+	0.393939	(0.39,0.42]	chr18	1386482	5	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	1	118	2	5.82154	6.1525	6.48346	1.61258e-9	1.5735e-11	1.73353e-7	2.61287e-9
chr1	12578876	12578956	862198	0	-	0.6125	(0.59,1]	chr1	87515	3	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	DHRS3:MIR6730	ENSG00000162496.9:ENSG00000276830.1	ENST00000616661.5:ENST00000464917.5:ENST00000622213.1:ENST00000430996.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	0	94	2	5.982	6.149875	6.31775	1.42041e-5	3.32583e-6	3.66887e-4	1.2115e-4
chr3	52944291	52944390	4187077	0	-	0.444444	(0.42,0.455]	chr3	353627	3	INTRON	INTRON	SFMBT1	ENSG00000163935.14	ENST00000394752.8:ENST00000482396.5:ENST00000483069.5:ENST00000497586.5	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.86165	6.149375	7.4371	9.80024e-8	1e-12	6.13979e-6	2.25522e-10
chr1	20655675	20655727	882287	0	-	0.480769	(0.455,0.49]	chr1	91142	1	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	4.58536	6.148875	7.71239	9.22269e-7	1e-12	4.12764e-5	2.25522e-10
chr11	60921870	60921967	11967047	0	+	0.639175	(0.59,1]	chr11	916466	2	CDS	CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	2	258	2	5.06905	6.147435	7.22582	5.93404e-9	5.69647e-9	5.3796e-7	4.79122e-7
chr15	45200401	45200478	15257535	0	-	0.532468	(0.53,0.59]	chr15	1203198	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SHF:CTD-2651B20.6	ENSG00000138606.19:ENSG00000260035.1	ENST00000290894.12:ENST00000561278.1:ENST00000563103.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	100	8305	2	5.96188	6.14734	6.3328	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	4111980	4112062	11774191	0	+	0.463415	(0.455,0.49]	chr11	900971	2	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.90053	6.14717	6.39381	4.02654e-7	1.45725e-8	2.05231e-5	1.07259e-6
chr1	432646	432746	821955	0	-	0.55	(0.53,0.59]	chr1	81335	524	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	75	2	5.97252	6.147035000000001	6.32155	8.30115e-7	6.18792e-8	3.4056e-5	4.08886e-6
chr1	16889701	16889801	75078	0	+	0.47	(0.455,0.49]	chr1	8651	2	INTRON	INTRON	CROCC	ENSG00000058453.17	ENST00000466256.6	protein_coding	processed_transcript	protein_coding	processed_transcript	37	2737	2	4.98994	6.14532	7.3007	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	93083675	93083774	13470828	0	-	0.484848	(0.455,0.49]	chr12	1059325	1	INTRON	INTRON	RP11-511B23.2	ENSG00000257322.6	ENST00000550324.5:ENST00000549930.1	lncRNA	lncRNA	lncRNA	lncRNA	0	75	2	5.47599	6.144615	6.81324	7.64978e-6	3.61927e-10	2.4151e-4	4.26011e-8
chr11	6615441	6615502	12249934	0	-	0.47541	(0.455,0.49]	chr11	946844	1	CDS	CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2:ENST00000436873.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	243	2	5.23811	6.144095	7.05008	3.65875e-9	1e-12	3.52173e-7	2.25522e-10
chr9	87730380	87730451	10347582	0	+	0.464789	(0.455,0.49]	chr9	778733	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	143	2	6.00195	6.14379	6.28563	1.86149e-7	1e-12	1.07114e-5	2.25522e-10
chr11	88294105	88294185	12533063	0	-	0.5125	(0.49,0.53]	chr11	972520	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	121	2	5.21705	6.143765	7.07048	6.26966e-9	2.56515e-11	5.16133e-7	4.45749e-9
chr10	78339507	78339607	11142731	0	+	0.48	(0.455,0.49]	chr10	847188	88	INTRON	INTRON	RP11-90J7.3:LINC00856	ENSG00000282863.1:ENSG00000230417.12	ENST00000634930.1:ENST00000635422.1:ENST00000635180.1:ENST00000634389.1:ENST00000635545.1:ENST00000421324.4:ENST00000670962.1:ENST00000659477.1:ENST00000653428.1:ENST00000624665.3:ENST00000432742.1:ENST00000667413.1:ENST00000634452.1:ENST00000659842.1	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.79143	6.142975	6.49452	8.96581e-7	6.22217e-9	4.03386e-5	5.13192e-7
chr7	11629739	11629839	8680922	0	-	0.32	(0.29,0.33]	chr7	663881	359	INTRON	INTRON	THSD7A	ENSG00000005108.16	ENST00000423059.9:ENST00000617773.1	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	4.45534	6.142315	7.82929	0.00110984	1e-12	0.0127344	2.25522e-10
chr4	158228726	158228825	5192595	0	+	0.525253	(0.49,0.53]	chr4	419237	90	INTRON	INTRON	TMEM144	ENSG00000164124.11	ENST00000508243.5:ENST00000514558.5:ENST00000296529.11:ENST00000511532.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	148	2	4.40667	6.14227	7.87787	3.62526e-6	1e-12	1.29307e-4	2.25522e-10
chr13	39013682	39013781	13976235	0	-	0.50505	(0.49,0.53]	chr13	1096566	11	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.91935	6.1418	6.36425	5.27035e-7	2.32873e-8	2.57927e-5	1.60638e-6
chr20	41123094	41123194	17790166	0	+	0.49	(0.455,0.49]	chr20	1503536	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	189	2	5.97408	6.141795	6.30951	1.52819e-8	1e-12	1.21924e-6	2.25522e-10
chr6	70399349	70399417	7220390	0	+	0.25	[0,0.29]	chr6	557281	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-462G2.1	ENSG00000237643.2	ENST00000671572.1:ENST00000418403.2:ENST00000667898.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.32631	6.141395	6.95648	1.03299e-5	1.82686e-11	3.0965e-4	2.98529e-9
chr11	63753090	63753138	11976794	0	+	0.395833	(0.39,0.42]	chr11	918366	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	330	2	5.6803	6.14099	6.60168	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	196053487	196053558	4663177	0	-	0.492958	(0.49,0.53]	chr3	385558	2	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	648	2	5.77922	6.140174999999999	6.50113	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	225406747	225406832	1528108	0	-	0.482353	(0.455,0.49]	chr1	152792	2	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	129	2	6.00865	6.13902	6.26939	2.14641e-8	2.44449e-12	1.62968e-6	4.9932e-10
chr4	163093573	163093628	5764360	0	-	0.563636	(0.53,0.59]	chr4	454717	1	EXON_SMALL	EXON_SMALL:PRIMIRNA	MIR4454	ENSG00000283468.1	ENST00000638111.1	miRNA	miRNA	miRNA	miRNA:primary_miRNA	0	88	2	5.27087	6.13729	7.00371	5.9416e-5	2.168e-10	0.00130151	2.7023e-8
chr1	42928931	42928982	967002	0	-	0.607843	(0.59,1]	chr1	101876	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	503	2	5.42528	6.136654999999999	6.84803	4.15131e-10	1e-12	5.31939e-8	2.25522e-10
chr1	149813370	149813440	1286917	0	-	0.714286	(0.59,1]	chr1	127824	1	CDS	CDS:EXON_MRNA	H3C13	ENSG00000183598.4	ENST00000331491.2	protein_coding	protein_coding	protein_coding	protein_coding	2	247	2	4.54509	6.136645	7.7282	1.76874e-7	3.0336e-10	9.15009e-6	4.03591e-8
chr7	120988768	120988840	8493725	0	+	0.486111	(0.455,0.49]	chr7	648288	2	UTR5	UTR5:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	1	137	2	4.4906	6.135529999999999	7.78046	1.87629e-6	1e-12	7.52075e-5	2.25522e-10
chr6	26250364	26250434	7647261	0	-	0.528571	(0.49,0.53]	chr6	582573	2	CDS	CDS:EXON_MRNA	H3C7	ENSG00000277775.2	ENST00000618052.2	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	6.01403	6.13502	6.25601	2.61944e-7	5.54522e-8	1.42854e-5	3.37102e-6
chr5	76732709	76732808	6044917	0	+	0.464646	(0.455,0.49]	chr5	474229	5	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	6.04107	6.134595	6.22812	2.38066e-7	3.0313e-8	1.17461e-5	2.20766e-6
chrX	48461717	48461797	19062768	0	-	0.5375	(0.53,0.59]	chrX	1620397	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	140	2	4.7916	6.132705	7.47381	2.73039e-7	2.30949e-12	1.31828e-5	5.14823e-10
chr1	19232623	19232698	877276	0	-	0.52	(0.49,0.53]	chr1	90467	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.76456	6.13078	6.497	1.57714e-6	7.74861e-9	6.4504e-5	6.22462e-7
chr4	164189289	164189387	5204343	0	+	0.397959	(0.39,0.42]	chr4	420030	11	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	83	2	5.10761	6.13074	7.15387	5.12039e-5	1.14057e-11	0.00114668	1.94869e-9
chr16	76496766	76496866	15745335	0	+	0.29	[0,0.29]	chr16	1254401	13	INTRON	INTRON	CNTNAP4:RP11-58C22.1	ENSG00000152910.19:ENSG00000287694.1	ENST00000377504.8:ENST00000307431.12:ENST00000655556.1:ENST00000611870.5:ENST00000622250.4:ENST00000478060.5:ENST00000476707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	4.57416	6.12876	7.68336	6.75561e-4	1e-12	0.00873562	2.25522e-10
chr5	177334283	177334343	6991065	0	-	0.566667	(0.53,0.59]	chr5	534725	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000504071.1:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	180	2	5.74558	6.124975	6.50437	3.61407e-6	1e-12	1.29307e-4	2.25522e-10
chr3	42092659	42092759	3433644	0	+	0.26	[0,0.29]	chr3	298614	7	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.82749	6.124890000000001	6.42229	4.85228e-7	1.17732e-9	2.15406e-5	1.31363e-7
chr1	176999827	176999927	1384060	0	-	0.48	(0.455,0.49]	chr1	140660	177	INTRON	INTRON	ASTN1	ENSG00000152092.16	ENST00000367657.7:ENST00000361833.7:ENST00000424564.2:ENST00000281881.7:ENST00000473640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	320	2	4.63051	6.1247050000000005	7.6189	6.5205e-7	1e-12	3.08344e-5	2.25522e-10
chr5	134780150	134780246	6231250	0	+	0.28125	[0,0.29]	chr5	485342	21	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	157	2	5.55847	6.12456	6.69065	1.73717e-10	1e-12	2.45858e-8	2.25522e-10
chr4	144119685	144119781	5696640	0	-	0.447917	(0.42,0.455]	chr4	451549	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	9	705	2	5.68807	6.122999999999999	6.55793	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	20653626	20653700	882261	0	-	0.621622	(0.59,1]	chr1	91124	1	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	2	278	2	5.52682	6.12077	6.71472	3.12863e-7	1.1401e-10	1.66791e-5	1.52282e-8
chr1	55046584	55046646	203663	0	+	0.677419	(0.59,1]	chr1	26125	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000673662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	374	2	5.84292	6.120570000000001	6.39822	1.26414e-9	9.92073e-12	1.40225e-7	1.72541e-9
chr2	158496692	158496792	2156488	0	+	0.5	(0.49,0.53]	chr2	198753	380	INTRON	INTRON	PKP4	ENSG00000144283.22	ENST00000389759.8:ENST00000426248.7:ENST00000628904.2:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	124	2	4.87263	6.120324999999999	7.36802	1.15551e-7	1.22835e-12	6.3314e-6	2.96934e-10
chr4	143997558	143997634	5696297	0	-	0.355263	(0.33,0.36]	chr4	451472	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	201	2	5.83429	6.120145	6.406	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	26033275	26033371	7646934	0	-	0.583333	(0.53,0.59]	chr6	582493	1	CDS	CDS:EXON_MRNA	H2AC4	ENSG00000278463.2	ENST00000615868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.8838	6.11944	6.35508	1.51824e-6	4.77539e-8	5.67784e-5	3.2714e-6
chr4	73299768	73299868	4886226	0	+	0.59	(0.53,0.59]	chr4	402195	295	INTRON	INTRON	RP11-692D12.1	ENSG00000250220.1	ENST00000502790.1	lncRNA	lncRNA	lncRNA	lncRNA	9	778	2	4.55603	6.117925	7.67982	4.36418e-12	1e-12	9.08832e-10	2.25522e-10
chr4	133871941	133872041	5650557	0	-	0.38	(0.36,0.39]	chr4	449787	3	SS3_PROX	SS3_PROX:INTRON	RP11-427M20.1	ENSG00000251388.1	ENST00000507844.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	5.55715	6.11737	6.67759	2.50226e-6	7.69366e-10	9.53193e-5	8.30244e-8
chr12	49755695	49755756	12869189	0	+	0.42623	(0.42,0.455]	chr12	999616	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000549445.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	453	2	6.11321	6.117265	6.12132	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	10390437	10390500	5875072	0	+	0.555556	(0.53,0.59]	chr5	461937	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	304	2	5.96488	6.11656	6.26824	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62633183	62633271	12409792	0	-	0.545455	(0.53,0.59]	chr11	961291	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000526732.5:ENST00000534422.5:ENST00000534613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	644	2	5.55466	6.1159300000000005	6.6772	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	21841100	21841192	890813	0	-	0.641304	(0.59,1]	chr1	92308	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	6.0849	6.115215	6.14553	1.19649e-5	5.79142e-6	3.513e-4	1.75119e-4
chr2	239150160	239150259	3242100	0	-	0.373737	(0.36,0.39]	chr2	285860	51	INTRON	INTRON	HDAC4	ENSG00000068024.17	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000461113.5:ENST00000553145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.80494	6.111280000000001	6.41762	9.78955e-7	2.0661e-9	3.91899e-5	2.14917e-7
chr1	101787121	101787219	1200901	0	-	0.510204	(0.49,0.53]	chr1	117316	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	159	2	5.76456	6.111035	6.45751	1.57714e-6	1e-12	6.4504e-5	2.25522e-10
chr3	139677404	139677504	4481526	0	-	0.59	(0.53,0.59]	chr3	372448	3	SS5_PROX	SS5_PROX:INTRON	NMNAT3	ENSG00000163864.17	ENST00000506254.5:ENST00000339837.9:ENST00000643695.2:ENST00000413939.6:ENST00000646611.1:ENST00000642987.1:ENST00000645290.1:ENST00000296202.11:ENST00000511444.5:ENST00000512391.5:ENST00000645507.1:ENST00000647257.1:ENST00000509291.5:ENST00000514703.5:ENST00000511003.1:ENST00000509034.5:ENST00000509737.5:ENST00000505779.5:ENST00000645083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.74558	6.110715000000001	6.47585	3.61407e-6	1.951e-8	1.29307e-4	1.37715e-6
chr6	26322041	26322125	7647384	0	-	0.464286	(0.455,0.49]	chr6	582599	3	EXON_PSEUDO	EXON_PSEUDO	H3C9P	ENSG00000220875.1	ENST00000404612.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	67	2	5.79143	6.109795	6.42816	8.96581e-7	1.09292e-8	4.03386e-5	8.34724e-7
chr6	122445143	122445179	7923731	0	-	0.472222	(0.455,0.49]	chr6	606804	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.94942	6.109405	6.26939	4.68666e-7	2.14641e-8	2.08717e-5	1.62968e-6
chr3	49104633	49104733	4172529	0	-	0.65	(0.59,1]	chr3	350419	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000414533.5:ENST00000635443.1:ENST00000494767.2:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5:ENST00000482261.7:ENST00000634527.1:ENST00000634802.1:ENST00000634602.1:ENST00000635622.1:ENST00000635231.1:ENST00000635052.1:ENST00000635194.1:ENST00000479495.5:ENST00000418549.3:ENST00000417025.2:ENST00000634609.1:ENST00000635494.1:ENST00000634953.1:ENST00000634724.1:ENST00000635278.1:ENST00000634359.1:ENST00000482438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	5.84488	6.109355	6.37383	4.10826e-5	1.54311e-6	9.68079e-4	5.75816e-5
chr1	116389527	116389617	423795	0	+	0.466667	(0.455,0.49]	chr1	41783	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000491156.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	296	2	5.68297	6.108615	6.53426	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	21166302	21166400	17925236	0	-	0.469388	(0.455,0.49]	chr20	1517257	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	KIZ-AS1:RPS15AP1	ENSG00000232712.6:ENSG00000214535.3	ENST00000616177.4:ENST00000457423.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	74	2	5.4037	6.1084700000000005	6.81324	1.20695e-5	3.61927e-10	3.52389e-4	4.26011e-8
chr2	101308218	101308308	2814461	0	-	0.755556	(0.59,1]	chr2	251298	2	CDS	CDS:EXON_MRNA	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.58599	6.108325	6.63066	1.04372e-4	5.25661e-7	0.00186841	2.57927e-5
chr12	7925895	7925948	13193228	0	-	0.433962	(0.42,0.455]	chr12	1033501	2	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000479059.3:ENST00000490763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	115	2	5.57903	6.107995000000001	6.63696	6.2636e-10	2.07715e-10	7.59962e-8	2.59928e-8
chr2	47373887	47373967	1784354	0	+	0.525	(0.49,0.53]	chr2	172392	2	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000474691.1:ENST00000419334.1:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	99	2	4.79086	6.107315	7.42377	4.20783e-4	1.26299e-12	0.00611538	2.77129e-10
chr14	30617416	30617514	14199883	0	+	0.346939	(0.33,0.36]	chr14	1112694	10	UTR3	UTR3:EXON_MRNA	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000648008.1:ENST00000549159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.57651	6.105119999999999	6.63373	1.91451e-6	8.13851e-10	7.60536e-5	8.72045e-8
chr1	45014438	45014507	174345	0	+	0.536232	(0.53,0.59]	chr1	22550	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000462688.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000652514.1:ENST00000472254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.79528	6.10456	6.41384	2.61912e-6	3.18937e-8	9.89086e-5	2.10263e-6
chr1	159919273	159919324	1326681	0	-	0.54902	(0.53,0.59]	chr1	135583	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	131	2	5.52814	6.104125	6.68011	3.42488e-9	5.58677e-10	3.34439e-7	6.25722e-8
chr17	40019151	40019251	16538026	0	-	0.4	(0.39,0.42]	chr17	1354337	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MED24	ENSG00000008838.20	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000614384.4:ENST00000491466.5:ENST00000535508.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	506	2	5.70227	6.10239	6.50251	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	33120182	33120279	132551	0	+	0.659794	(0.59,1]	chr1	16358	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AZIN2	ENSG00000142920.17	ENST00000481886.5:ENST00000475935.5:ENST00000294517.11:ENST00000471119.5:ENST00000373443.7:ENST00000652171.1:ENST00000484656.5:ENST00000478204.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	2806	2	4.16806	6.102314999999999	8.03657	3.99493e-10	1e-12	5.14765e-8	2.25522e-10
chr22	49527695	49527794	18543141	0	-	0.484848	(0.455,0.49]	chr22	1583944	861	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	271	2	5.70377	6.101324999999999	6.49888	5.6348e-11	1e-12	8.16735e-9	2.46312e-10
chr1	145461142	145461238	446286	0	+	0.395833	(0.39,0.42]	chr1	43898	15	EXON_MRNA	EXON_MRNA	CH17-262O2.4	ENSG00000286620.1	ENST00000664012.1	TEC	TEC	TEC	TEC	0	74	2	5.29502	6.100135	6.90525	1.68146e-5	1.30822e-10	4.64895e-4	1.7152e-8
chr5	105383860	105383960	6743006	0	-	0.33	(0.29,0.33]	chr5	518593	1376	INTRON	INTRON	RP11-6N13.1	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	86	2	5.22713	6.0995550000000005	6.97198	4.3297e-9	2.02243e-11	4.08288e-7	3.26813e-9
chr20	44509959	44510028	17982101	0	-	0.521739	(0.49,0.53]	chr20	1523396	2	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	4.99034	6.09933	7.20832	1.6002e-4	1.11589e-11	0.00286408	1.91591e-9
chr22	46628359	46628458	18400594	0	+	0.616162	(0.59,1]	chr22	1567227	10	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000406902.6:ENST00000361034.7:ENST00000490378.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.76827	6.0969750000000005	6.42568	5.97759e-5	1.13013e-6	0.00130766	4.43062e-5
chr8	97816057	97816118	9506858	0	+	0.491803	(0.49,0.53]	chr8	722750	1	CDS	CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	5.92822	6.09694	6.26566	3.67654e-8	6.83531e-12	2.61023e-6	1.2401e-9
chr4	87390860	87390915	5518550	0	-	0.345455	(0.33,0.36]	chr4	441984	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	153	2	5.85766	6.09606	6.33446	3.50098e-9	1e-12	3.39963e-7	2.25522e-10
chr6	26217074	26217170	7101605	0	+	0.614583	(0.59,1]	chr6	542860	1	CDS	CDS:EXON_MRNA	H2AC8	ENSG00000277075.2	ENST00000303910.4	protein_coding	protein_coding	protein_coding	protein_coding	2	242	2	4.58245	6.09565	7.60885	1.81834e-7	3.40285e-10	1.05501e-5	4.0269e-8
chr1	25301519	25301602	103756	0	+	0.506024	(0.49,0.53]	chr1	12148	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	138	2	6.05914	6.09534	6.13154	1.86307e-7	1e-12	1.07114e-5	2.25522e-10
chr12	71495019	71495119	12949280	0	+	0.56	(0.53,0.59]	chr12	1009501	463	INTRON	INTRON	LGR5	ENSG00000139292.13	ENST00000266674.10:ENST00000550851.5:ENST00000536515.5:ENST00000540815.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.33948	6.09388	6.84828	4.08763e-5	8.63547e-10	9.64741e-4	9.22462e-8
chr4	165338714	165338778	5206921	0	+	0.3125	(0.29,0.33]	chr4	420270	2	CDS	CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	5	264	2	5.73061	6.092245	6.45388	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62881900	62881977	11974415	0	+	0.532468	(0.53,0.59]	chr11	918040	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000539458.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	175	2	5.35325	6.091975	6.8307	9.38801e-10	1.6917e-11	1.08218e-7	2.7853e-9
chr1	41155434	41155534	957841	0	-	0.32	(0.29,0.33]	chr1	101317	23	INTRON	INTRON	SCMH1	ENSG00000010803.16	ENST00000397171.6:ENST00000361191.9:ENST00000361705.7:ENST00000402904.6:ENST00000372597.5:ENST00000372596.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000456518.3	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.46016	6.09192	6.72368	7.10374e-6	5.50058e-11	2.0881e-4	8.7771e-9
chrX	47585259	47585314	18687909	0	+	0.636364	(0.59,1]	chrX	1593564	2	CDS	CDS:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5	protein_coding	protein_coding	protein_coding	protein_coding	3	481	2	5.8	6.089145	6.37829	2.25062e-11	1.16753e-11	3.95702e-9	1.99273e-9
chr17	28574951	28575006	16485934	0	-	0.545455	(0.53,0.59]	chr17	1347756	1	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5:ENST00000435638.5:ENST00000578590.1:ENST00000582381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.5853	6.08886	6.59242	9.83355e-6	7.57932e-9	2.98194e-4	6.12104e-7
chr11	5233990	5234064	12240426	0	-	0.527027	(0.49,0.53]	chr11	946032	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HBD	ENSG00000223609.11	ENST00000292901.7:ENST00000643122.1:ENST00000650601.1:ENST00000417377.1:ENST00000429817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.39399	6.088794999999999	6.7836	1.71804e-5	6.30366e-10	4.72485e-4	6.93109e-8
chr11	62634910	62635000	12409815	0	-	0.522222	(0.49,0.53]	chr11	961307	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	831	2	5.3955	6.08568	6.77586	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	12878381	12878480	17471764	0	-	0.525253	(0.49,0.53]	chr19	1463255	1	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1:ENST00000592506.1:ENST00000586547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	168	2	5.59503	6.085565000000001	6.5761	2.65032e-9	1e-12	2.6743e-7	2.25522e-10
chr17	28655286	28655384	16486837	0	-	0.55102	(0.53,0.59]	chr17	1348116	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SDF2	ENSG00000132581.10	ENST00000247020.9:ENST00000592250.5:ENST00000585749.5:ENST00000588472.6:ENST00000587788.1:ENST00000587629.5:ENST00000591903.1:ENST00000589788.1:ENST00000587338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.46762	6.08394	6.70026	1.97761e-5	3.08274e-9	5.29643e-4	2.80081e-7
chr11	119097854	119097948	12626627	0	-	0.553191	(0.53,0.59]	chr11	979858	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	294	2	5.81235	6.083690000000001	6.35503	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	10034886	10034986	17682515	0	+	0.83	(0.59,1]	chr20	1494341	89	INTRON	INTRON	ANKEF1	ENSG00000132623.16	ENST00000437504.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	97	2	5.4627	6.08276	6.70282	2.43542e-4	1.99877e-7	0.00399705	1.01475e-5
chr19	11448539	11448629	17231258	0	+	0.522222	(0.49,0.53]	chr19	1419929	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000587290.5:ENST00000590098.1:ENST00000592435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	264	2	5.42375	6.0824300000000004	6.74111	3.67972e-12	1e-12	7.74293e-10	2.25522e-10
chr20	56519545	56519642	17835559	0	+	0.381443	(0.36,0.39]	chr20	1508018	2	INTRON	INTRON	FAM209A	ENSG00000124103.10	ENST00000481560.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	105	2	5.70202	6.081110000000001	6.4602	1.37652e-9	4.41795e-11	1.50612e-7	6.57851e-9
chr5	87110898	87110997	6679981	0	-	0.434343	(0.42,0.455]	chr5	515315	82	INTRON	INTRON	MIR4280HG	ENSG00000233828.5	ENST00000662995.1:ENST00000666497.1	lncRNA	lncRNA	lncRNA	lncRNA	0	75	2	5.28783	6.08033	6.87283	2.17539e-5	2.43554e-10	5.73422e-4	2.99724e-8
chr11	119026023	119026080	12626345	0	-	0.596491	(0.59,1]	chr11	979713	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.95267	6.079375000000001	6.20608	2.38682e-5	4.1102e-6	6.18922e-4	1.31763e-4
chr18	26885697	26885797	16799647	0	+	0.47	(0.455,0.49]	chr18	1385848	172	INTRON	INTRON	AQP4-AS1	ENSG00000260372.7	ENST00000582605.5:ENST00000579964.6:ENST00000628174.2:ENST00000627963.2:ENST00000668155.1:ENST00000658581.1:ENST00000670815.1:ENST00000628325.2:ENST00000664268.1:ENST00000656601.1:ENST00000578701.5:ENST00000568797.3:ENST00000664897.1:ENST00000669364.1	lncRNA	lncRNA	lncRNA	lncRNA	0	85	2	4.97525	6.07699	7.17873	1.38474e-4	1.0606e-11	0.00254294	1.8327e-9
chr9	117180714	117180802	10824695	0	-	0.602273	(0.59,1]	chr9	820020	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	ASTN2:RPL10P3	ENSG00000148219.18:ENSG00000230734.1	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8:ENST00000431607.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	251	2	4.17858	6.07605	7.97352	2.50041e-6	2.0194e-11	9.53193e-5	3.26474e-9
chr7	20189658	20189758	8715383	0	-	0.45	(0.42,0.455]	chr7	665405	47	INTRON	INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	108	2	5.70618	6.07579	6.4454	1.07351e-8	3.18512e-11	8.24229e-7	5.42205e-9
chr13	29590358	29590457	13945995	0	-	0.414141	(0.39,0.42]	chr13	1094623	37	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.92558	6.075055	6.22453	2.00458e-7	5.19291e-8	1.13771e-5	3.1902e-6
chr17	20785430	20785528	16163495	0	+	0.510204	(0.49,0.53]	chr17	1303908	9	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	123	2	4.74284	6.0749200000000005	7.407	2.96405e-7	1.50335e-12	1.59277e-5	3.22765e-10
chr11	1757478	1757556	12230466	0	-	0.666667	(0.59,1]	chr11	944396	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000677300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	187	2	4.63181	6.07402	7.51623	4.23414e-6	6.8268e-10	1.4819e-4	7.4503e-8
chr7	97854579	97854629	8940631	0	-	0.5	(0.49,0.53]	chr7	682241	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	71	2	5.52837	6.07346	6.61855	7.50805e-6	2.73279e-9	2.3779e-4	2.53367e-7
chr1	156018251	156018351	1313158	0	-	0.48	(0.455,0.49]	chr1	133100	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5:ENST00000368311.5:ENST00000472898.5:ENST00000466905.4:ENST00000474377.5:ENST00000531917.5:ENST00000526212.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	317	2	6.07001	6.0734449999999995	6.07688	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	108249265	108249365	1979409	0	+	0.27	[0,0.29]	chr2	187823	15	INTRON	INTRON	SULT1C3	ENSG00000196228.5	ENST00000681802.2:ENST00000329106.3	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	4.3527	6.072984999999999	7.79327	9.58099e-6	1e-12	2.93255e-4	2.25522e-10
chr19	12643946	12644046	17469631	0	-	0.42	(0.39,0.42]	chr19	1462697	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CTD-2192J16.22	ENSG00000269242.1	ENST00000597692.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	62	2	5.80735	6.072934999999999	6.33852	4.99312e-7	2.05438e-8	2.4714e-5	1.43837e-6
chr12	112022169	112022269	13094254	0	+	0.52	(0.49,0.53]	chr12	1021470	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	4	303	2	5.3769	6.07167	6.76644	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	112884114	112884212	6153360	0	+	0.387755	(0.36,0.39]	chr5	480651	17	INTRON	INTRON	SRP19	ENSG00000153037.15	ENST00000503445.5:ENST00000506997.2:ENST00000391338.3:ENST00000509024.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	4.98743	6.07107	7.15471	8.82225e-5	7.24432e-12	0.00178337	1.30346e-9
chr11	130120720	130120765	12206882	0	+	0.444444	(0.42,0.455]	chr11	942010	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000529483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	117	2	4.73772	6.070535	7.40335	2.72689e-7	1.30251e-12	1.4763e-5	2.85084e-10
chr12	54459088	54459108	13344024	0	-	0.35	(0.33,0.36]	chr12	1049872	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000552336.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	5.06662	6.06771	7.0688	1.70355e-8	1.11999e-11	1.3397e-6	1.92107e-9
chr22	41370090	41370190	18379933	0	+	0.44	(0.42,0.455]	chr22	1564470	21	INTRON	INTRON	TEF	ENSG00000167074.15	ENST00000406644.7	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.64877	6.067525	7.48628	5.54135e-7	1e-12	2.69297e-5	2.25522e-10
chr1	159919324	159919376	1326682	0	-	0.596154	(0.59,1]	chr1	135583	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	6.01622	6.066179999999999	6.11614	1.18141e-5	1.0124e-5	3.14877e-4	3.04701e-4
chr5	134666822	134666909	6230244	0	+	0.574713	(0.53,0.59]	chr5	485164	1	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.40497	6.06549	6.72601	2.83308e-5	2.47831e-9	7.12614e-4	2.32242e-7
chr12	49185643	49185732	13324023	0	-	0.41573	(0.39,0.42]	chr12	1045766	7	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	423	2	4.96519	6.064985	7.16478	9.28679e-12	1e-12	1.78451e-9	2.25522e-10
chr19	580660	580721	17188310	0	+	0.57377	(0.53,0.59]	chr19	1410772	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	1478	2	5.76436	6.064909999999999	6.36546	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	86504374	86504472	9457235	0	+	0.438776	(0.42,0.455]	chr8	720187	9	EXON_PSEUDO	EXON_PSEUDO	SLC2A3P4	ENSG00000254088.1	ENST00000521259.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	66	2	5.65139	6.06479	6.47819	2.06893e-6	8.14533e-9	8.11386e-5	6.49842e-7
chr2	10784933	10785030	2510731	0	-	0.639175	(0.59,1]	chr2	226668	1	CDS	CDS:EXON_MRNA	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	7	1055	2	5.90936	6.06368	6.218	9.42257e-12	1e-12	1.80893e-9	2.25522e-10
chr1	52995902	52996000	197356	0	+	0.510204	(0.49,0.53]	chr1	25156	28	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	SCP2:TUBBP10	ENSG00000116171.19:ENSG00000226147.1	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000427668.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	138	2	5.96747	6.062925	6.15838	3.70439e-7	1e-12	1.92378e-5	2.25522e-10
chr1	20652673	20652727	882246	0	-	0.462963	(0.455,0.49]	chr1	91114	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000475210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.47599	6.062075	6.64816	7.64978e-6	1.62448e-9	2.4151e-4	1.61468e-7
chr19	18388376	18388468	17258397	0	+	0.695652	(0.59,1]	chr19	1425388	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GDF15	ENSG00000130513.6	ENST00000252809.3:ENST00000594925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	883	2	5.15307	6.061885	6.9707	5.68919e-11	1e-12	9.00242e-9	2.25522e-10
chr1	86880661	86880725	1144690	0	-	0.4375	(0.42,0.455]	chr1	113744	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	138	2	5.88797	6.060455	6.23294	3.72505e-7	1e-12	1.92638e-5	2.25522e-10
chr19	21440576	21440676	17272055	0	+	0.58	(0.53,0.59]	chr19	1427249	131	INTRON	INTRON	CTD-2561J22.3	ENSG00000269237.1	ENST00000600810.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	17	1345	2	4.9328	6.06043	7.18806	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	13322192	13322265	4046248	0	-	0.520548	(0.49,0.53]	chr3	339534	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.58452	6.0602800000000006	7.53604	9.98532e-7	1e-12	4.42534e-5	2.25522e-10
chr11	63753068	63753090	11976793	0	+	0.545455	(0.53,0.59]	chr11	918365	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	135	2	5.7988	6.060175	6.32155	6.18792e-8	4.40271e-11	4.08886e-6	6.56058e-9
chr9	133124539	133124639	10879223	0	-	0.44	(0.42,0.455]	chr9	825573	34	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.61714	6.059025	6.50091	4.98624e-6	2.22415e-9	1.54467e-4	2.28625e-7
chr5	168616627	168616719	6369407	0	+	0.565217	(0.53,0.59]	chr5	494770	4	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	299	2	6.05058	6.058985	6.06739	3.51341e-12	1e-12	7.47308e-10	2.25522e-10
chr3	132244265	132244364	4457729	0	-	0.353535	(0.33,0.36]	chr3	370294	1	INTRON	INTRON	CPNE4	ENSG00000196353.12	ENST00000512055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.30286	6.057729999999999	6.8126	1.23392e-5	1.47373e-10	3.58359e-4	1.91207e-8
chr1	42930785	42930866	967026	0	-	0.555556	(0.53,0.59]	chr1	101887	3	CDS	CDS:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	342	2	5.38095	6.05757	6.73419	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	68207947	68208043	15357785	0	-	0.520833	(0.49,0.53]	chr15	1212942	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-315D16.2:CLN6	ENSG00000260007.3:ENSG00000128973.13	ENST00000637888.1:ENST00000562767.2:ENST00000637054.1:ENST00000646164.1:ENST00000249806.11:ENST00000638076.1:ENST00000636964.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	6.05534	6.05724	6.05914	2.57847e-7	1.86307e-7	1.25763e-5	1.07114e-5
chr12	68553388	68553487	13394545	0	-	0.494949	(0.49,0.53]	chr12	1055115	5	EXON_PSEUDO	EXON_PSEUDO	RPSAP12	ENSG00000240087.3	ENST00000435879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	145	2	4.96337	6.0562000000000005	7.14903	4.22618e-10	2.00208e-11	5.39328e-8	3.23824e-9
chrX	53538834	53538916	19077217	0	-	0.560976	(0.53,0.59]	chrX	1622665	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.79528	6.055395	6.31551	2.61912e-6	6.83735e-8	9.89086e-5	4.03413e-6
chr4	56453681	56453761	4848665	0	+	0.525	(0.49,0.53]	chr4	399465	2	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	5.08338	6.054555000000001	7.02573	2.00613e-8	3.98821e-11	1.40889e-6	6.62185e-9
chr5	75351423	75351512	6037065	0	+	0.41573	(0.39,0.42]	chr5	473627	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	106	2	5.54958	6.05408	6.55858	7.89825e-10	2.40377e-10	9.33634e-8	2.97071e-8
chr16	2927626	2927725	15495684	0	+	0.494949	(0.49,0.53]	chr16	1227976	51	INTRON	INTRON	FLYWCH1	ENSG00000059122.17	ENST00000253928.14:ENST00000416288.6:ENST00000570425.5:ENST00000573525.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.66172	6.054005	6.44629	3.99372e-6	8.18066e-9	1.28691e-4	7.15844e-7
chr5	154821342	154821426	6929626	0	-	0.535714	(0.53,0.59]	chr5	530572	2	CDS	CDS:UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000524250.5:ENST00000517938.5:ENST00000520581.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.93486	6.05394	6.17302	1.0295e-6	1.98983e-7	4.52516e-5	1.01095e-5
chr4	56460229	56460328	4848732	0	+	0.414141	(0.39,0.42]	chr4	399473	8	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	7	431	2	5.71801	6.0530349999999995	6.38806	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	181222465	181222565	7008868	0	-	0.63	(0.59,1]	chr5	537291	5	PRIMIRNA	PRIMIRNA	MIR4638	ENSG00000264732.1	ENST00000581158.1	miRNA	primary_miRNA	miRNA	primary_miRNA	1	194	2	4.39807	6.05295	7.70783	1.36238e-5	3.52588e-10	3.54656e-4	4.60836e-8
chr6	112356616	112356714	7901690	0	-	0.510204	(0.49,0.53]	chr6	605281	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP45	ENSG00000219773.1	ENST00000401872.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	88	2	4.89405	6.051185	7.20832	2.57983e-4	1.11589e-11	0.00419998	1.91591e-9
chr20	58997677	58997753	18026101	0	-	0.473684	(0.455,0.49]	chr20	1527935	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000680156.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	79	2	5.07172	6.0509	7.03008	8.3067e-5	4.60763e-11	0.00171126	6.82387e-9
chr5	154823467	154823567	6929652	0	-	0.52	(0.49,0.53]	chr5	530587	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000524250.5:ENST00000517938.5:ENST00000520581.5:ENST00000521518.5:ENST00000524363.5:ENST00000522825.1:ENST00000519501.5:ENST00000519258.1:ENST00000523997.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	115	2	5.49489	6.050845	6.6068	2.01858e-9	4.93197e-10	2.10919e-7	5.61212e-8
chr15	99259121	99259220	15142853	0	+	0.40404	(0.39,0.42]	chr15	1190792	16	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	164	2	3.85207	6.050725	8.24938	1.28587e-4	1e-12	0.00241206	2.25522e-10
chrX	49173204	49173281	18693770	0	+	0.454545	(0.42,0.455]	chrX	1594665	2	CDS	CDS:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6:ENST00000376322.7	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	5.18003	6.05068	6.92133	5.86547e-9	1.546e-10	5.329e-7	1.99104e-8
chr4	164188799	164188897	5204338	0	+	0.387755	(0.36,0.39]	chr4	420030	6	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	77	2	4.98743	6.049365	7.1113	8.82225e-5	1.13e-11	0.00178337	1.93632e-9
chr3	39406715	39406719	3423773	0	+	0.5	(0.49,0.53]	chr3	297986	1	EXON_MRNA	EXON_MRNA	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1	protein_coding	retained_intron	protein_coding	retained_intron	0	65	2	5.91935	6.049205	6.17906	5.27035e-7	1.01082e-7	2.57927e-5	5.6272e-6
chr11	75568759	75568829	12023352	0	+	0.557143	(0.53,0.59]	chr11	927013	1	CDS_START	CDS_START:CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000525611.5:ENST00000525876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	403	2	5.80964	6.04911	6.28858	3.79275e-11	1e-12	6.33012e-9	2.25522e-10
chr9	125237061	125237154	10856231	0	-	0.483871	(0.455,0.49]	chr9	822381	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	664	2	5.94131	6.048685	6.15606	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	75135822	75135886	14709087	0	-	0.453125	(0.42,0.455]	chr14	1152534	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1:ENST00000555873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.65139	6.048395	6.4454	2.06893e-6	1.07351e-8	8.11386e-5	8.24229e-7
chr13	114173162	114173262	13912097	0	+	0.3	(0.29,0.33]	chr13	1090781	180	INTRON	INTRON	CFAP97D2	ENSG00000283361.2	ENST00000643687.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.85377	6.04821	6.24265	2.10378e-7	2.00502e-8	1.18923e-5	1.40889e-6
chr2	20331019	20331117	2541476	0	-	0.428571	(0.42,0.455]	chr2	228610	33	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.58564	6.047945	6.51025	3.24669e-6	6.20371e-9	1.18495e-4	5.13192e-7
chr11	62885464	62885536	11974461	0	+	0.541667	(0.53,0.59]	chr11	918066	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000457660.6:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	438	2	5.42707	6.04737	6.66767	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	869761	869859	5276280	0	-	0.479592	(0.455,0.49]	chr4	424387	12	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	63	2	5.84701	6.0472850000000005	6.24756	5.98588e-7	4.80845e-8	2.85128e-5	2.97443e-6
chr11	33710274	33710343	12344216	0	-	0.42029	(0.42,0.455]	chr11	953997	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	163	2	4.39775	6.046855000000001	7.69596	4.12205e-9	1e-12	3.92738e-7	2.25522e-10
chr15	44715522	44715562	14899956	0	+	0.35	(0.33,0.36]	chr15	1171703	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000560681.1:ENST00000559220.1:ENST00000561139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	445	2	5.82527	6.046455	6.26764	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	49185376	49185465	13324020	0	-	0.505618	(0.49,0.53]	chr12	1045766	4	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	251	2	5.79416	6.045925	6.29769	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	113374935	113375007	13101596	0	+	0.583333	(0.53,0.59]	chr12	1022405	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000547163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.84332	6.04467	6.24602	1.90853e-6	1.15746e-7	7.59317e-5	6.3314e-6
chr11	71441226	71441297	12444467	0	-	0.591549	(0.59,1]	chr11	966993	1	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000534701.1:ENST00000683874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	179	2	4.73465	6.04321	7.35177	2.2876e-6	2.29702e-9	8.86852e-5	2.17474e-7
chr10	31805691	31805790	11440486	0	-	0.313131	(0.29,0.33]	chr10	872250	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000492028.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.95738	6.04122	6.12506	2.05428e-7	2.06649e-8	1.04036e-5	1.58157e-6
chr19	56377510	56377609	17636522	0	-	0.40404	(0.39,0.42]	chr19	1490050	10	INTRON	INTRON	ZNF582	ENSG00000018869.17	ENST00000589143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	4.77106	6.0410699999999995	7.31108	3.03764e-4	2.28584e-12	0.00472028	4.71328e-10
chr5	115620434	115620516	6777053	0	-	0.402439	(0.39,0.42]	chr5	519923	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	5.98125	6.038075	6.0949	1.28715e-7	1e-12	7.78377e-6	2.25522e-10
chr15	45200478	45200555	15257536	0	-	0.61039	(0.59,1]	chr15	1203198	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SHF:CTD-2651B20.6	ENSG00000138606.19:ENSG00000260035.1	ENST00000290894.12:ENST00000561278.1:ENST00000563103.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	1140	2	6.01004	6.0367049999999995	6.06337	1.41642e-12	1e-12	3.06934e-10	2.46312e-10
chr1	161462376	161462475	1333820	0	-	0.686869	(0.59,1]	chr1	136938	215	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	80	10454	2	5.92396	6.035765	6.14757	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	49611023	49611084	7729657	0	-	0.590164	(0.59,1]	chr6	592950	1	CDS	CDS:EXON_MRNA:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	5	805	2	5.152	6.03234	6.91268	1.79112e-10	1e-12	2.2748e-8	2.46312e-10
chr6	26330261	26330358	7647444	0	-	0.525773	(0.49,0.53]	chr6	582609	8	INTRON	INTRON	RP1-45P21.8	ENSG00000287050.1	ENST00000655687.1	lncRNA	lncRNA	lncRNA	lncRNA	135	8706	2	6.00802	6.031375000000001	6.05473	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	44872050	44872149	17349313	0	+	0.59596	(0.59,1]	chr19	1439137	3	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.07453	6.03121	6.98789	0.00117617	3.00484e-8	0.0132131	1.99911e-6
chr19	48327534	48327634	17365228	0	+	0.54	(0.53,0.59]	chr19	1441692	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	159	2	4.80806	6.031175	7.25429	2.90361e-9	2.12673e-11	2.89216e-7	3.41926e-9
chr15	32104849	32104948	14850964	0	+	0.454545	(0.42,0.455]	chr15	1165957	17	INTRON	INTRON	CHRNA7	ENSG00000175344.19	ENST00000635978.1:ENST00000636603.1:ENST00000638106.1:ENST00000637183.1:ENST00000637033.1:ENST00000635884.1:ENST00000637519.1:ENST00000454250.7:ENST00000675428.1:ENST00000637552.1:ENST00000637350.1:ENST00000635722.1:ENST00000638031.1:ENST00000306901.9:ENST00000637971.1:ENST00000437966.3:ENST00000637786.2:ENST00000636044.1:ENST00000636850.1:ENST00000636440.1:ENST00000636647.1:ENST00000635759.1:ENST00000636271.1:ENST00000676380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	88	2	4.80064	6.030245	7.25985	3.0479e-4	5.66946e-12	0.00472028	1.0538e-9
chr16	29664283	29664375	15626152	0	+	0.586957	(0.53,0.59]	chr16	1239195	6	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	421	2	5.89279	6.028734999999999	6.16468	1.1654e-12	1e-12	2.57987e-10	2.46312e-10
chr9	87525201	87525301	10345642	0	+	0.44	(0.42,0.455]	chr9	778565	183	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.71427	6.028285	6.3423	1.33053e-6	2.51668e-8	5.6008e-5	1.71825e-6
chr17	59666102	59666171	16295286	0	+	0.362319	(0.36,0.39]	chr17	1321666	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	5.68169	6.027725	6.37376	3.12288e-9	5.43735e-11	3.08118e-7	7.91403e-9
chrX	35743985	35744084	18648091	0	+	0.424242	(0.42,0.455]	chrX	1590849	25	EXON_PSEUDO	EXON_PSEUDO	RP11-497J7.4	ENSG00000271088.1	ENST00000605789.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	83	2	4.91213	6.027075	7.14202	1.75074e-4	1.83911e-11	0.00306313	2.99968e-9
chr5	127552311	127552410	6205032	0	+	0.464646	(0.455,0.49]	chr5	483456	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2:ENST00000513427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	146	2	5.334	6.026999999999999	6.72	3.76113e-10	1.04478e-11	4.87344e-8	1.80922e-9
chr1	161791007	161791107	502122	0	+	0.4	(0.39,0.42]	chr1	54504	2	SS3_PROX	SS3_PROX:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.64918	6.026695	6.40421	3.47137e-6	3.36859e-9	1.13687e-4	3.30022e-7
chrX	120447840	120447932	19196244	0	-	0.456522	(0.455,0.49]	chrX	1631997	1	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	142	2	4.45678	6.026555	7.59633	4.23264e-8	1e-12	2.95285e-6	2.25522e-10
chr19	53873917	53874013	17388663	0	+	0.708333	(0.59,1]	chr19	1446781	4	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000448420.5:ENST00000391769.2:ENST00000391768.2:ENST00000414489.1	protein_coding	protein_coding	protein_coding	protein_coding	3	461	2	5.41118	6.025885000000001	6.64059	4.62214e-10	1.37212e-12	5.82996e-8	2.98261e-10
chr16	16018719	16018819	15567495	0	+	0.39	(0.36,0.39]	chr16	1232692	17	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.63354	6.025455	6.41737	1.45096e-6	7.87465e-9	6.01084e-5	6.30554e-7
chr5	10386993	10387066	5875036	0	+	0.506849	(0.49,0.53]	chr5	461930	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.65129	6.024945000000001	6.3986	3.38975e-6	1.75841e-8	1.23071e-4	1.26398e-6
chr4	143880410	143880509	5696019	0	-	0.424242	(0.42,0.455]	chr4	451454	1	CDS	CDS:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	185	2	5.72806	6.024045	6.32003	2.52757e-11	1e-12	4.3995e-9	2.25522e-10
chr1	161000703	161000777	1331457	0	-	0.554054	(0.53,0.59]	chr1	136451	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	202	2	5.12406	6.023540000000001	6.92302	4.15369e-10	6.72395e-12	5.31939e-8	1.22308e-9
chr14	46048564	46048664	14270490	0	+	0.4	(0.39,0.42]	chr14	1115744	1072	INTRON	INTRON	LINC00871	ENSG00000258700.6	ENST00000666179.1:ENST00000664642.1:ENST00000555246.5	lncRNA	lncRNA	lncRNA	lncRNA	0	81	2	4.89218	6.0230250000000005	7.15387	1.6518e-4	1.14057e-11	0.0029267300000000002	1.94869e-9
chr1	228097341	228097396	744020	0	+	0.509091	(0.49,0.53]	chr1	75088	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ARF1:MIR3620	ENSG00000143761.16:ENSG00000284163.1	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000482962.5:ENST00000497165.5:ENST00000490705.1:ENST00000584469.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	4	202	2	4.84834	6.022645000000001	7.19695	7.20801e-12	6.97309e-12	1.41633e-9	1.26116e-9
chr17	28575175	28575229	16485938	0	-	0.444444	(0.42,0.455]	chr17	1347758	2	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5:ENST00000435638.5:ENST00000578590.1:ENST00000582381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	113	2	4.69393	6.022565	7.3512	3.8764e-7	2.2361e-12	1.99378e-5	4.62988e-10
chr19	38307596	38307674	17559397	0	-	0.551282	(0.53,0.59]	chr19	1474569	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	131	2	4.6384	6.021875	7.40535	8.42977e-7	4.97868e-12	3.83773e-5	9.3677e-10
chr17	15465062	15465162	16456267	0	-	0.47	(0.455,0.49]	chr17	1343279	116	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.90132	6.02159	6.14186	6.63378e-7	6.15079e-8	2.82038e-5	4.07335e-6
chr5	76732412	76732511	6044914	0	+	0.383838	(0.36,0.39]	chr5	474229	2	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.77516	6.0212	6.26724	5.05798e-7	2.79819e-8	2.49522e-5	1.8758e-6
chr9	34318790	34318886	10238886	0	+	0.572917	(0.53,0.59]	chr9	769897	5	EXON_PSEUDO	EXON_PSEUDO	SERPINH1P1	ENSG00000229207.1	ENST00000419794.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	76	2	5.33948	6.01987	6.70026	4.08763e-5	3.08274e-9	9.64741e-4	2.80081e-7
chr8	54615466	54615566	9334456	0	+	0.46	(0.455,0.49]	chr8	714255	381	INTRON	INTRON	RP1	ENSG00000104237.11	ENST00000636932.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.54484	6.019679999999999	6.49452	4.89523e-6	6.22217e-9	1.67428e-4	5.13192e-7
chr20	31561633	31561684	17748733	0	+	0.45098	(0.42,0.455]	chr20	1497888	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5:ENST00000619859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	4.93872	6.01961	7.1005	5.07972e-8	2.76534e-11	3.4372e-6	4.32055e-9
chr4	112565069	112565151	5056864	0	+	0.512195	(0.49,0.53]	chr4	410931	2	EXON_PSEUDO	EXON_PSEUDO	H3P14	ENSG00000250966.2	ENST00000321285.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	65	2	5.66172	6.0192250000000005	6.37673	3.99372e-6	1.47262e-8	1.28691e-4	1.18213e-6
chr1	180186052	180186117	582799	0	+	0.523077	(0.49,0.53]	chr1	60556	1	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.70904	6.019055	6.32907	2.30382e-6	3.09658e-8	8.86852e-5	2.04921e-6
chr11	1491378	1491477	12229822	0	-	0.40404	(0.39,0.42]	chr11	944267	47	INTRON	INTRON	MOB2	ENSG00000182208.14	ENST00000526462.5:ENST00000529380.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	0	64	2	5.24369	6.01905	6.79441	4.15285e-5	7.63029e-11	8.8376e-4	1.17188e-8
chr22	19326398	19326498	18295242	0	+	0.41	(0.39,0.42]	chr22	1552681	337	INTRON	INTRON	AC000085.4	ENSG00000287146.1	ENST00000664918.1	lncRNA	lncRNA	lncRNA	lncRNA	1	122	2	4.36441	6.01802	7.67163	4.74002e-6	1e-12	1.63674e-4	2.25522e-10
chr12	57748424	57748524	13357732	0	-	0.52	(0.49,0.53]	chr12	1053000	8	UTR3	UTR3:EXON_MRNA:PRIMIRNA	CDK4:MIR6759	ENSG00000135446.17:ENSG00000283621.1	ENST00000312990.10:ENST00000257904.11:ENST00000638110.1:ENST00000552713.5:ENST00000549606.5:ENST00000553237.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	111	2	5.33938	6.0172799999999995	6.69518	2.08896e-9	9.10937e-10	2.01159e-7	1.0553e-7
chr8	98041800	98041850	9962815	0	-	0.42	(0.39,0.42]	chr8	751693	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000521534.1:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	207	2	3.89582	6.01708	8.13834	4.35752e-9	1e-12	4.10726e-7	2.25522e-10
chr2	169954151	169954251	2199122	0	+	0.33	(0.29,0.33]	chr2	201269	37	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000487689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	5.79035	6.017025	6.2437	7.26161e-7	6.97101e-9	3.03698e-5	6.22246e-7
chr6	26188864	26188920	7647180	0	-	0.482143	(0.455,0.49]	chr6	582536	1	CDS	CDS:EXON_MRNA	H4C4	ENSG00000277157.2	ENST00000614247.2	protein_coding	protein_coding	protein_coding	protein_coding	2	154	2	5.53851	6.016715	6.49492	3.01799e-9	1.18627e-12	2.9904e-7	2.61943e-10
chr5	146356899	146356999	6892277	0	-	0.35	(0.33,0.36]	chr5	527621	493	INTRON	INTRON	CTC-359M8.1	ENSG00000250025.2	ENST00000515598.1	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	5.08655	6.016465	6.9463800000000004	4.6453e-5	3.9089e-11	0.00106753	5.9011e-9
chr1	160999875	160999926	1331445	0	-	0.529412	(0.49,0.53]	chr1	136443	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	116	2	5.65424	6.015485	6.37673	1.47262e-8	1.06693e-10	1.18213e-6	1.43719e-8
chr17	83133230	83133327	16715340	0	-	0.536082	(0.53,0.59]	chr17	1379007	7	EXON_MRNA	EXON_MRNA	AC139099.7	ENSG00000279143.1	ENST00000625083.1	TEC	TEC	TEC	TEC	0	71	2	5.5853	6.01524	6.44518	9.83355e-6	2.49042e-8	2.98194e-4	1.70299e-6
chr6	26021890	26021990	7100990	0	+	0.58	(0.53,0.59]	chr6	542748	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C1	ENSG00000278637.2	ENST00000617569.2	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.5853	6.01524	6.44518	9.83355e-6	2.49042e-8	2.98194e-4	1.70299e-6
chr2	100040045	100040145	2808914	0	-	0.45	(0.42,0.455]	chr2	250865	281	INTRON	INTRON	AFF3	ENSG00000144218.21	ENST00000672756.2:ENST00000409236.6:ENST00000317233.8:ENST00000409579.5:ENST00000672204.1:ENST00000672269.1:ENST00000432037.5:ENST00000423966.6:ENST00000441400.5:ENST00000673328.1:ENST00000424600.5:ENST00000416492.5:ENST00000673232.1:ENST00000672197.1:ENST00000440445.6:ENST00000672857.1:ENST00000672047.1:ENST00000415384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	134	2	4.22524	6.014305	7.80337	1.2079e-5	1e-12	3.52389e-4	2.25522e-10
chr1	149740248	149740347	1286528	0	-	0.525253	(0.49,0.53]	chr1	127783	55	INTRON	INTRON	PDE4DIPP7	ENSG00000234232.7	ENST00000617878.2:ENST00000615436.2:ENST00000636086.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	167	2	4.55551	6.014234999999999	7.47296	1.06911e-9	1e-12	1.21429e-7	2.25522e-10
chrX	79362941	79363040	19130535	0	-	0.434343	(0.42,0.455]	chrX	1627063	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5:ENST00000482194.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	5.67654	6.013605	6.35067	8.53658e-9	8.00905e-11	7.38823e-7	1.11858e-8
chr7	127362669	127362769	9057406	0	-	0.29	[0,0.29]	chr7	691089	30	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:AC000123.2	ENSG00000048405.10:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	2	122	2	5.87232	6.012585	6.15285	4.5618e-12	1e-12	8.6953e-10	2.46312e-10
chr1	149860919	149860975	1287083	0	-	0.589286	(0.53,0.59]	chr1	127848	1	CDS	CDS:EXON_MRNA	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	222	2	4.84181	6.0117650000000005	7.18172	4.21413e-11	1.23607e-11	6.31002e-9	2.29494e-9
chr3	14458015	14458082	3320548	0	+	0.522388	(0.49,0.53]	chr3	292233	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.4156	6.0112000000000005	6.6068	1.84143e-5	2.01858e-9	4.53637e-4	2.10919e-7
chr19	41424816	41424909	17335275	0	+	0.612903	(0.59,1]	chr19	1436941	2	UTR3	UTR3:EXON_MRNA	CTC-435M10.3:BCKDHA	ENSG00000255730.5:ENSG00000248098.12	ENST00000540732.3:ENST00000269980.7:ENST00000457836.6:ENST00000544905.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.72839	6.01039	6.29239	7.24021e-5	2.49631e-6	0.0015254	8.6736e-5
chrX	44963388	44963488	18678901	0	+	0.53	(0.49,0.53]	chrX	1592601	16	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	112	2	4.90469	6.009285	7.11388	8.91237e-8	1.66522e-11	5.05835e-6	2.99587e-9
chr13	43263099	43263199	13995638	0	-	0.42	(0.39,0.42]	chr13	1097676	260	INTRON	INTRON	ENOX1	ENSG00000120658.13	ENST00000261488.10	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.29502	6.008179999999999	6.72134	1.68146e-5	7.30692e-10	4.64895e-4	7.92185e-8
chr2	218277365	218277453	3186668	0	-	0.443182	(0.42,0.455]	chr2	279916	1	CDS	CDS:UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	105	2	4.9583	6.00739	7.05648	5.55326e-8	9.47631e-12	3.37237e-6	1.81591e-9
chr6	30062278	30062333	7110009	0	+	0.490909	(0.49,0.53]	chr6	544473	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR1H	ENSG00000066379.15	ENST00000471008.5:ENST00000376782.6:ENST00000359374.8:ENST00000376785.2:ENST00000332435.10:ENST00000463141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.39399	6.00627	6.61855	1.71804e-5	2.73279e-9	4.72485e-4	2.53367e-7
chr15	84612756	84612853	15420424	0	-	0.360825	(0.36,0.39]	chr15	1219532	2	INTRON	INTRON	RP11-182J1.18:RP11-182J1.5	ENSG00000275120.3:ENSG00000256278.1	ENST00000618330.3:ENST00000658287.1:ENST00000542197.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.55715	6.004865000000001	6.45258	2.50226e-6	5.80288e-9	9.53193e-5	4.87132e-7
chr5	75350315	75350374	6037049	0	+	0.355932	(0.33,0.36]	chr5	473617	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	149	2	5.18057	6.0046800000000005	6.82879	2.2936e-11	1.06926e-12	4.02581e-9	2.39438e-10
chr17	44352410	44352481	16234936	0	+	0.647887	(0.59,1]	chr17	1314585	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	239	2	5.17637	6.004325	6.83228	1.49032e-7	1.76798e-9	8.86859e-6	1.738e-7
chr22	37851339	37851411	18364404	0	+	0.388889	(0.36,0.39]	chr22	1562153	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	132	2	4.27551	6.002325	7.72914	2.30819e-7	1e-12	1.2922e-5	2.25522e-10
chr2	62146677	62146772	1844801	0	+	0.621053	(0.59,1]	chr2	175130	5	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000458337.5:ENST00000444166.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	85	2	5.76827	6.00185	6.23543	5.97759e-5	3.47367e-6	0.00130766	1.13687e-4
chr12	120199476	120199485	13579763	0	-	0.333333	(0.33,0.36]	chr12	1068817	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.39996	6.0008	6.60164	6.52649e-6	1.09692e-9	2.12073e-4	1.13492e-7
chr3	9970581	9970661	4031246	0	-	0.4625	(0.455,0.49]	chr3	338388	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	5.79143	5.999995	6.20856	8.96581e-7	6.55518e-8	4.03386e-5	3.89009e-6
chr11	71444054	71444153	12444499	0	-	0.585859	(0.53,0.59]	chr11	967005	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000683874.1:ENST00000526780.5:ENST00000525346.5:ENST00000531364.5:ENST00000529990.5:ENST00000527452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	120	2	5.24084	5.999105	6.75737	7.13421e-9	1.77309e-9	5.80051e-7	1.87805e-7
chr11	49742738	49742838	11945701	0	+	0.44	(0.42,0.455]	chr11	913718	1655	INTRON	INTRON	RP11-707M1.1	ENSG00000205035.8	ENST00000534201.5:ENST00000527477.1:ENST00000530858.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	145	2	4.25877	5.997975	7.73718	2.31906e-7	1e-12	1.29516e-5	2.25522e-10
chr7	92614047	92614146	8924980	0	-	0.414141	(0.39,0.42]	chr7	681136	93	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	4.82004	5.99726	7.17448	1.28478e-9	9.26359e-12	1.41837e-7	1.62081e-9
chr1	112914077	112914165	1232317	0	-	0.420455	(0.42,0.455]	chr1	120457	2	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	5	346	2	5.85188	5.996585	6.14129	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	42929953	42930035	967016	0	-	0.621951	(0.59,1]	chr1	101883	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	712	2	5.55928	5.995430000000001	6.43158	1.19603e-11	1e-12	2.24254e-9	2.25522e-10
chr12	57715829	57715899	12904286	0	+	0.671429	(0.59,1]	chr12	1005875	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000549307.5:ENST00000550438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	93	2	5.338	5.99507	6.65214	3.196e-4	4.6081e-7	0.00457916	2.3043e-5
chr4	156913653	156913753	5747727	0	-	0.44	(0.42,0.455]	chr4	454316	398	INTRON	INTRON	PDGFC	ENSG00000145431.11	ENST00000502773.6:ENST00000274071.6:ENST00000422544.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	123	2	5.99314	5.994865000000001	5.99659	1.65844e-7	3.08076e-12	9.74137e-6	6.1559e-10
chr10	72161437	72161537	11564575	0	-	0.47	(0.455,0.49]	chr10	880155	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000530394.5:ENST00000672940.1:ENST00000317126.8:ENST00000394915.7:ENST00000525286.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	4.87186	5.994375	7.11689	2.33781e-4	1.96418e-11	0.00385436	3.18285e-9
chr1	40080396	40080452	954749	0	-	0.482143	(0.455,0.49]	chr1	100881	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	132	2	5.79143	5.99302	6.19461	8.96581e-7	1e-12	4.03386e-5	2.25522e-10
chr15	59114796	59114876	14959895	0	+	0.45	(0.42,0.455]	chr15	1175694	2	CDS	CDS:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.44441	5.99301	6.54161	8.23077e-6	4.74233e-9	2.56136e-4	4.06115e-7
chr11	119027798	119027872	12626367	0	-	0.581081	(0.53,0.59]	chr11	979723	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6:ENST00000525787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.88982	5.9929749999999995	6.09613	1.39814e-6	3.47717e-7	5.82056e-5	1.62117e-5
chr1	21854267	21854343	890972	0	-	0.605263	(0.59,1]	chr1	92394	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.41325	5.99207	6.57089	3.01546e-4	4.62351e-7	0.00472028	2.06661e-5
chr11	62629244	62629295	12409743	0	-	0.568627	(0.53,0.59]	chr11	961257	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	155	2	4.77783	5.99206	7.20629	3.90914e-9	3.07772e-11	3.44174e-7	5.24777e-9
chr12	11663745	11663845	12733802	0	+	0.4	(0.39,0.42]	chr12	990049	132	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.70692	5.991725000000001	6.27653	2.36087e-6	1.06521e-8	8.27472e-5	9.02974e-7
chr17	15464962	15465062	16456266	0	-	0.47	(0.455,0.49]	chr17	1343279	115	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.63332	5.990935	6.34855	4.15159e-6	1.09383e-8	1.32627e-4	9.21346e-7
chrX	134169670	134169766	19243372	0	-	0.34375	(0.33,0.36]	chrX	1634463	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:PRIMIRNA	MIR363:AC002407.3:MIR92A2:MIR19B2:MIR20B:MIR18B:MIR106A	ENSG00000284499.1:ENSG00000283638.2:ENSG00000284538.1:ENSG00000284107.1:ENSG00000284043.1:ENSG00000283931.1:ENSG00000284157.1	ENST00000384840.3:ENST00000636668.1:ENST00000385299.1:ENST00000385077.3:ENST00000384977.1:ENST00000454574.4:ENST00000384870.1	miRNA	miRNA	miRNA:lncRNA	miRNA:lncRNA:primary_miRNA	0	66	2	5.08655	5.99045	6.89435	4.6453e-5	6.58165e-11	0.00106753	9.37232e-9
chr6	36968330	36968425	7683193	0	-	0.484211	(0.455,0.49]	chr6	589200	3	UTR3	UTR3:EXON_MRNA	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	5.01795	5.989655	6.96136	2.66992e-8	8.94937e-11	1.97197e-6	1.23264e-8
chrX	9569040	9569140	18567787	0	+	0.5	(0.49,0.53]	chrX	1586476	81	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.92	5.9895700000000005	6.05914	6.89283e-7	1.86307e-7	2.91313e-5	1.07114e-5
chr6	39194252	39194337	7690404	0	-	0.576471	(0.53,0.59]	chr6	589675	2	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.84332	5.989205	6.13509	1.90853e-6	2.62487e-7	7.59317e-5	1.27527e-5
chr20	31550063	31550121	17748613	0	+	0.465517	(0.455,0.49]	chr20	1497870	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000464661.5:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000464173.5:ENST00000472128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	108	2	4.75804	5.98829	7.21854	2.37841e-7	7.10598e-12	1.32405e-5	1.2832e-9
chr6	28597323	28597423	7652399	0	-	0.54	(0.53,0.59]	chr6	583150	2	SS5_PROX	SS5_PROX:INTRON	ZBED9	ENSG00000232040.4	ENST00000646382.1:ENST00000530247.1:ENST00000524745.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	2182	2	5.6097	5.987745	6.36579	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	73677700	73677798	12457786	0	-	0.367347	(0.36,0.39]	chr11	968371	22	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.55715	5.98726	6.41737	2.50226e-6	7.87465e-9	9.53193e-5	6.30554e-7
chr11	119054493	119054584	12626539	0	-	0.538462	(0.53,0.59]	chr11	979815	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5:ENST00000534233.5:ENST00000526656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	127	2	5.68658	5.9869	6.28722	8.04768e-8	1.28277e-10	5.1468e-6	1.68881e-8
chr6	32116759	32116815	7664406	0	-	0.589286	(0.53,0.59]	chr6	585978	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	71	2	5.46762	5.9867550000000005	6.50589	1.97761e-5	1.53327e-8	5.29643e-4	1.12074e-6
chr6	26682497	26682597	7103034	0	+	0.47	(0.455,0.49]	chr6	543241	3	SS3_PROX	SS3_PROX:INTRON	RP11-457M11.8	ENSG00000285571.1	ENST00000647995.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.37609	5.9859	6.59571	2.05373e-5	1.2059e-9	4.97369e-4	1.33979e-7
chr5	80651063	80651161	6667606	0	-	0.418367	(0.39,0.42]	chr5	514741	11	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	1392	2	5.40379	5.98564	6.56749	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	41348374	41348455	17568668	0	-	0.419753	(0.39,0.42]	chr19	1476905	2	CDS	CDS:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding	3	165	2	5.14581	5.985485000000001	6.82516	5.56682e-11	2.35667e-12	8.8625e-9	4.83079e-10
chr15	43766727	43766818	14896500	0	+	0.450549	(0.42,0.455]	chr15	1171296	1	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	208	2	3.75358	5.9851849999999995	8.21679	5.81216e-8	1e-12	3.86625e-6	2.25522e-10
chr1	246766057	246766139	813419	0	+	0.52439	(0.49,0.53]	chr1	80447	1	CDS	CDS:EXON_MRNA	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.32179	5.9845950000000006	6.6474	2.63311e-5	2.1237e-9	6.73425e-4	2.03271e-7
chrX	40598680	40598734	18667556	0	+	0.407407	(0.39,0.42]	chrX	1591863	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637930.1:ENST00000479120.2:ENST00000637140.1:ENST00000637793.1:ENST00000638046.1:ENST00000637019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.74439	5.98446	6.22453	7.99187e-7	5.19291e-8	3.66071e-5	3.1902e-6
chr14	27442326	27442426	14547736	0	-	0.41	(0.39,0.42]	chr14	1140611	1198	INTRON	INTRON	CTD-3006G17.2	ENSG00000258932.5	ENST00000553392.5:ENST00000554904.5:ENST00000556890.1:ENST00000555797.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	57	2	5.86768	5.984215	6.10075	3.14934e-7	1.37224e-7	1.67595e-5	7.34618e-6
chr17	28556899	28556972	16485729	0	-	0.547945	(0.53,0.59]	chr17	1347692	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000484580.6:ENST00000582615.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.79528	5.98415	6.17302	2.61912e-6	1.98983e-7	9.89086e-5	1.01095e-5
chrX	119470958	119471058	18841531	0	+	0.42	(0.39,0.42]	chrX	1605569	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9:ENST00000463551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	128	2	4.99782	5.983805	6.96979	3.02871e-10	1.22388e-11	3.64116e-8	2.27934e-9
chr12	7921571	7921631	13193179	0	-	0.416667	(0.39,0.42]	chr12	1033483	2	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	101	2	5.48398	5.98372	6.48346	1.61258e-9	4.53356e-10	1.73353e-7	5.19925e-8
chr17	39243344	39243444	16219555	0	+	0.65	(0.59,1]	chr17	1310999	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-690G19.4	ENSG00000265460.6	ENST00000579400.6	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	0	85	2	5.64515	5.9826	6.32005	1.07144e-4	2.12246e-6	0.00206452	7.5146e-5
chr4	86949846	86949935	5516772	0	-	0.617977	(0.59,1]	chr4	441809	3	EXON_PSEUDO	EXON_PSEUDO	TECRP1	ENSG00000235043.3	ENST00000513307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	85	2	5.64515	5.9826	6.32005	1.07144e-4	2.12246e-6	0.00206452	7.5146e-5
chr1	149860722	149860819	1287081	0	-	0.556701	(0.53,0.59]	chr1	127846	9	UTR3	UTR3:EXON_MRNA	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	188	2	4.89903	5.982275	7.06552	1.23572e-10	6.20006e-11	1.63613e-8	9.72972e-9
chr17	59817711	59817773	16296752	0	+	0.33871	(0.33,0.36]	chr17	1321846	1	CDS	CDS:UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.95803	5.981365	6.0047	2.53891e-7	6.70662e-8	1.24442e-5	4.38033e-6
chr18	49491404	49491445	17119625	0	-	0.390244	(0.39,0.42]	chr18	1405595	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000581091.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	219	2	5.92542	5.978925	6.03243	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	100016379	100016438	10772876	0	-	0.40678	(0.39,0.42]	chr9	815445	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.38032	5.977145	6.57397	9.82886e-6	2.74698e-9	2.98194e-4	2.54234e-7
chr11	75571983	75572083	12023390	0	+	0.58	(0.53,0.59]	chr11	927026	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	278	2	5.88938	5.976475000000001	6.06357	3.08487e-12	1e-12	6.64959e-10	2.25522e-10
chr19	14515451	14515548	17480909	0	-	0.43299	(0.42,0.455]	chr19	1464580	8	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	5.05385	5.975565	6.89728	1.93794e-10	1.25501e-10	2.44791e-8	1.83699e-8
chr4	42491661	42491761	5396219	0	-	0.48	(0.455,0.49]	chr4	432323	56	INTRON	INTRON	ATP8A1	ENSG00000124406.16	ENST00000381668.9:ENST00000514372.5:ENST00000264449.14	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.95213	5.974055	5.99598	3.33072e-7	2.72823e-7	1.56608e-5	1.4763e-5
chrX	105714366	105714466	18806508	0	+	0.44	(0.42,0.455]	chrX	1602537	2296	INTRON	INTRON	IL1RAPL2	ENSG00000189108.13	ENST00000372582.6	protein_coding	protein_coding	protein_coding	protein_coding	2	147	2	4.14466	5.974015	7.80337	5.95085e-7	1e-12	2.84227e-5	2.25522e-10
chr1	167548061	167548121	1347899	0	-	0.433333	(0.42,0.455]	chr1	138005	2	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	1	106	2	5.51719	5.972465	6.42774	4.31262e-9	3.76325e-10	4.07413e-7	4.41173e-8
chr20	32136073	32136173	17752320	0	+	0.51	(0.49,0.53]	chr20	1498453	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.65129	5.972145	6.293	3.38975e-6	4.1349e-8	1.23071e-4	2.61265e-6
chr9	136042744	136042844	10888101	0	-	0.49	(0.455,0.49]	chr9	826903	234	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.6621	5.97122	7.28034	7.84472e-4	1.2611e-12	0.00927662	3.0277e-10
chr6	35892616	35892714	7678529	0	-	0.387755	(0.36,0.39]	chr6	588619	12	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.56862	5.97119	6.37376	4.90567e-6	3.12288e-9	1.526e-4	3.08118e-7
chr19	38920891	38920991	17561723	0	-	0.43	(0.42,0.455]	chr19	1475320	1	SS5_PROX	SS5_PROX:INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	112	2	5.88508	5.9709	6.05672	8.1674e-7	1e-12	3.36299e-5	2.46312e-10
chr5	177334343	177334403	6991066	0	-	0.533333	(0.53,0.59]	chr5	534725	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000504071.1:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	194	2	5.80059	5.970855	6.14112	2.39342e-7	1e-12	1.32863e-5	2.25522e-10
chr9	35060800	35060861	10638105	0	-	0.57377	(0.53,0.59]	chr9	804513	1	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.84332	5.969725	6.09613	1.90853e-6	3.47717e-7	7.59317e-5	1.62117e-5
chr3	150851292	150851391	3809378	0	+	0.50505	(0.49,0.53]	chr3	325137	75	INTRON	INTRON	SIAH2-AS1	ENSG00000244265.2	ENST00000663257.1	lncRNA	lncRNA	lncRNA	lncRNA	0	80	2	4.89405	5.969250000000001	7.04445	2.57983e-4	5.5223e-11	0.00419998	8.02095e-9
chr1	42929774	42929780	967013	0	-	0.333333	(0.33,0.36]	chr1	101881	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000669445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	89	2	5.46365	5.969225	6.4748	9.03216e-10	4.15679e-10	1.04985e-7	4.81804e-8
chr6	27505868	27505968	7649424	0	-	0.49	(0.455,0.49]	chr6	582784	94	INTRON	INTRON	XXbac-BPGBPG34I8.3	ENSG00000285703.1	ENST00000648816.1	lncRNA	lncRNA	lncRNA	lncRNA	52	3084	2	5.74738	5.968825	6.19027	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	67612371	67612458	11997093	0	+	0.666667	(0.59,1]	chr11	923231	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000526770.5:ENST00000533919.5:ENST00000527355.5:ENST00000531250.1:ENST00000534352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	86	2	5.51052	5.9681	6.42568	0.00019737500000000001	1.13013e-6	0.00336487	4.43062e-5
chr16	74496508	74496576	16031462	0	-	0.5	(0.49,0.53]	chr16	1287369	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.96654	5.967005	5.96747	4.9393e-7	3.70439e-7	2.18407e-5	1.92378e-5
chr5	37164420	37164513	6538995	0	-	0.247312	[0,0.29]	chr5	506287	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000509849.5:ENST00000514429.5:ENST00000675149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	4.92321	5.966355	7.0095	1.17014e-4	1.04493e-11	0.00222617	1.80922e-9
chr16	18794598	18794673	15877093	0	-	0.533333	(0.53,0.59]	chr16	1269304	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	432	2	5.82148	5.966145	6.11081	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	22621718	22621818	8721414	0	-	0.39	(0.36,0.39]	chr7	665771	486	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	4.73146	5.96523	7.199	3.06966e-7	1e-12	1.45846e-5	2.46312e-10
chr7	44799774	44799826	8261645	0	+	0.519231	(0.49,0.53]	chr7	629469	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	541	2	5.52077	5.96455	6.40833	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	45198601	45198686	15257513	0	-	0.564706	(0.53,0.59]	chr15	1203189	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SHF:CTD-2651B20.7	ENSG00000138606.19:ENSG00000259932.1	ENST00000290894.12:ENST00000561278.1:ENST00000568314.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	127	9315	2	5.40352	5.96411	6.5247	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	149832996	149833092	464749	0	+	0.552083	(0.53,0.59]	chr1	46792	1	UTR3	UTR3:EXON_MRNA	H4C14	ENSG00000270882.2	ENST00000578186.2:ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	187	2	4.92338	5.963545	7.00371	2.168e-10	4.87198e-11	2.7023e-8	7.88246e-9
chr14	20801597	20801697	14518858	0	-	0.53	(0.49,0.53]	chr14	1136980	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	4	324	2	5.82504	5.962565	6.10009	1.5013e-11	1e-12	2.73154e-9	2.25522e-10
chr19	18177710	18177764	17257714	0	+	0.518519	(0.49,0.53]	chr19	1425249	1	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	106	2	5.0153	5.96167	6.90804	3.17103e-8	2.00766e-10	2.29924e-6	2.52228e-8
chr17	28563817	28563907	16485809	0	-	0.522222	(0.49,0.53]	chr17	1347721	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000584080.5:ENST00000582721.5:ENST00000577594.5:ENST00000583631.1:ENST00000584413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.39399	5.961175	6.52836	1.71804e-5	5.94027e-9	4.72485e-4	4.95921e-7
chr15	65950570	65950670	15348960	0	-	0.44	(0.42,0.455]	chr15	1212376	193	INTRON	INTRON	MEGF11	ENSG00000157890.18	ENST00000409699.6:ENST00000288745.7:ENST00000422354.5:ENST00000395614.6:ENST00000490495.5:ENST00000455812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.49428	5.96101	6.42774	1.07978e-5	4.31262e-9	2.9314e-4	4.07413e-7
chr7	100580773	100580873	8951932	0	-	0.45	(0.42,0.455]	chr7	684087	21	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.49428	5.96101	6.42774	1.07978e-5	4.31262e-9	2.9314e-4	4.07413e-7
chr18	31541253	31541314	16809109	0	+	0.491803	(0.49,0.53]	chr18	1386468	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.08061	5.95764	6.83467	1.00361e-4	3.95701e-10	0.00196575	4.60945e-8
chr12	7924460	7924511	13193211	0	-	0.470588	(0.455,0.49]	chr12	1033495	2	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	106	2	5.56531	5.95693	6.34855	1.09383e-8	2.20525e-10	9.21346e-7	2.74579e-8
chrX	49173387	49173476	18693774	0	+	0.47191	(0.455,0.49]	chrX	1594669	1	CDS	CDS:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6:ENST00000376322.7	protein_coding	protein_coding	protein_coding	protein_coding	2	136	2	5.16315	5.956305	6.74946	2.83793e-10	6.11134e-11	3.79736e-8	8.78146e-9
chr11	57414672	57414731	12394504	0	-	0.559322	(0.53,0.59]	chr11	958647	2	CDS	CDS:EXON_MRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5:ENST00000530005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	118	2	4.88173	5.956205000000001	7.03068	1.36047e-7	1.57208e-10	7.30332e-6	2.25215e-8
chr6	44232906	44233006	7161517	0	+	0.58	(0.53,0.59]	chr6	553810	2	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	352	2	5.75633	5.9561399999999995	6.15595	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	80558869	80558967	9427545	0	+	0.510204	(0.49,0.53]	chr8	719144	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP47	ENSG00000188856.6	ENST00000479228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	178	2	5.85314	5.9561399999999995	6.05914	1.86307e-7	1e-12	1.07114e-5	2.25522e-10
chr18	46087148	46087232	17103828	0	-	0.571429	(0.53,0.59]	chr18	1404360	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	179	2	4.50645	5.9559	7.40535	2.62449e-9	4.97868e-12	2.65594e-7	9.3677e-10
chr9	136007332	136007432	10887742	0	-	0.61	(0.59,1]	chr9	826878	9	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	5.14635	5.955435	6.76452	1.67947e-7	1.3389e-7	9.85659e-6	7.1964e-6
chr7	100678469	100678541	8428132	0	+	0.541667	(0.53,0.59]	chr7	643347	2	CDS	CDS:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000393924.1:ENST00000469287.5:ENST00000470354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	5.92884	5.95369	5.97854	1.11987e-6	7.61837e-7	4.4003e-5	3.51585e-5
chr8	47967364	47967441	9316186	0	+	0.506494	(0.49,0.53]	chr8	713547	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.65129	5.95365	6.25601	3.38975e-6	5.54522e-8	1.23071e-4	3.37102e-6
chr1	230990186	230990263	751339	0	+	0.402597	(0.39,0.42]	chr1	76365	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.46085	5.952505	6.44416	5.81708e-6	8.46338e-9	1.921e-4	6.69855e-7
chr20	1277456	1277556	17646613	0	+	0.5	(0.49,0.53]	chr20	1491668	103	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.71721	5.951885	6.18656	2.77472e-6	6.92844e-8	9.47025e-5	4.51815e-6
chrX	26749389	26749489	18623796	0	+	0.54	(0.53,0.59]	chrX	1590348	4	INTRON	INTRON	VENTXP1	ENSG00000259849.2	ENST00000674719.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	71	2	5.33948	5.951815	6.56415	4.08763e-5	9.5574e-9	9.64741e-4	7.4729e-7
chr13	22696390	22696482	13928530	0	-	0.423913	(0.42,0.455]	chr13	1092772	5	EXON_PSEUDO	EXON_PSEUDO	FTH1P7	ENSG00000232187.1	ENST00000450676.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	249	2	5.68397	5.95089	6.21781	4.02344e-11	1e-12	6.67212e-9	2.25522e-10
chrX	74612481	74612581	19117731	0	-	0.33	(0.29,0.33]	chrX	1626344	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	4.60331	5.95006	7.29681	1.13994e-6	1e-12	4.91686e-5	2.25522e-10
chr6	8141621	8141721	7034630	0	+	0.4	(0.39,0.42]	chr6	539080	255	INTRON	INTRON	RP11-203H2.1	ENSG00000232234.4	ENST00000643749.1:ENST00000642149.1:ENST00000647315.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	5.29502	5.949845	6.60467	1.68146e-5	2.09314e-9	4.64895e-4	2.01229e-7
chr4	75749273	75749373	4892477	0	+	0.31	(0.29,0.33]	chr4	402979	240	INTRON	INTRON	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	2	180	2	4.92048	5.94952	6.97856	7.83331e-8	1e-12	5.03126e-6	2.25522e-10
chr11	125608108	125608198	12194405	0	+	0.533333	(0.53,0.59]	chr11	940755	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525431.1:ENST00000526726.1:ENST00000531001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	348	2	5.94218	5.948895	5.95561	1.03622e-11	1e-12	1.9694e-9	2.25522e-10
chr6	149771199	149771266	7481719	0	+	0.447761	(0.42,0.455]	chr6	571756	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	135	2	5.65139	5.94855	6.24571	2.06893e-6	1e-12	8.11386e-5	2.25522e-10
chr17	78170985	78171054	16367707	0	+	0.550725	(0.53,0.59]	chr17	1329559	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000591770.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.78927	5.945715	6.10216	2.83401e-6	3.17557e-7	9.62519e-5	1.68263e-5
chr11	62626334	62626390	12409703	0	-	0.553571	(0.53,0.59]	chr11	961233	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	456	2	5.7644	5.94562	6.12684	1.61049e-12	1e-12	3.75014e-10	2.25522e-10
chr9	126377268	126377368	10465762	0	+	0.5	(0.49,0.53]	chr9	788312	363	INTRON	INTRON	MVB12B	ENSG00000196814.15	ENST00000361171.8:ENST00000489637.3:ENST00000402437.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.39399	5.945494999999999	6.497	1.71804e-5	7.74861e-9	4.72485e-4	6.22462e-7
chr11	63752575	63752645	11976787	0	+	0.457143	(0.455,0.49]	chr11	918361	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	405	2	5.91561	5.943605	5.9716	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	100580475	100580574	8951929	0	-	0.414141	(0.39,0.42]	chr7	684087	18	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	95	2	4.91557	5.942679999999999	6.96979	7.36997e-8	1.22388e-11	4.29759e-6	2.27934e-9
chr3	128060507	128060584	3725089	0	+	0.428571	(0.42,0.455]	chr3	318482	1	CDS	CDS:EXON_MRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.65139	5.941330000000001	6.23127	2.06893e-6	6.12952e-8	8.11386e-5	3.67043e-6
chr20	44466749	44466842	17981954	0	-	0.505376	(0.49,0.53]	chr20	1523359	3	EXON_PSEUDO	EXON_PSEUDO	RPL37AP1	ENSG00000226243.1	ENST00000412502.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	119	2	4.40667	5.939814999999999	7.47296	3.62526e-6	1e-12	1.29307e-4	2.25522e-10
chr4	111527775	111527875	5050155	0	+	0.42	(0.39,0.42]	chr4	410549	111	INTRON	INTRON	RP11-255I10.2	ENSG00000248656.3	ENST00000681880.1	lncRNA	lncRNA	lncRNA	lncRNA	0	83	2	4.63883	5.936724999999999	7.23462	5.68159e-4	5.03186e-12	0.0077844	9.4516e-10
chrX	120438660	120438758	19196146	0	-	0.397959	(0.39,0.42]	chrX	1631971	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	449	2	5.43658	5.934725	6.43287	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	50925436	50925536	12875784	0	+	0.61	(0.59,1]	chr12	1000522	4	CDS	CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000550502.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	163	2	4.98882	5.93467	6.88052	4.68616e-7	6.21413e-8	2.33328e-5	3.71551e-6
chr8	106697523	106697621	9997306	0	-	0.540816	(0.53,0.59]	chr8	753977	2	EXON_PSEUDO	EXON_PSEUDO	TAGLN2P1	ENSG00000253676.1	ENST00000524097.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	77	2	5.04298	5.933809999999999	6.82464	1.91383e-4	1.06121e-9	0.0032874	1.10387e-7
chr11	62633004	62633101	12409790	0	-	0.556701	(0.53,0.59]	chr11	961289	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000526732.5:ENST00000534422.5:ENST00000534613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	1090	2	5.62531	5.932995	6.24068	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	100732112	100732183	14489581	0	+	0.605634	(0.59,1]	chr14	1132117	2	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	4	323	2	3.42626	5.93238	8.4385	1.24127e-5	1e-12	3.60444e-4	2.25522e-10
chr12	7817898	7817966	13192388	0	-	0.647059	(0.59,1]	chr12	1033381	2	CDS	CDS:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.90476	5.93154	6.95832	6.19423e-7	6.59602e-8	2.65225e-5	4.33113e-6
chrX	154433634	154433720	18917888	0	+	0.616279	(0.59,1]	chrX	1611909	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	185	2	4.15635	5.931375	7.7064	5.93256e-5	1.61886e-10	0.00130151	2.07034e-8
chr1	161506471	161506541	500405	0	+	0.585714	(0.53,0.59]	chr1	54213	3	CDS	CDS:EXON_MRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000482233.1:ENST00000467525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.88982	5.93117	5.97252	1.39814e-6	8.30115e-7	5.82056e-5	3.4056e-5
chr1	51761866	51761918	191415	0	+	0.5	(0.49,0.53]	chr1	24514	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	104	2	5.08338	5.93092	6.77846	2.00613e-8	4.23567e-10	1.40889e-6	5.39328e-8
chr2	216498824	216498843	2381770	0	+	0.684211	(0.59,1]	chr2	214014	1	EXON_MRNA	EXON_MRNA	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1	protein_coding	retained_intron	protein_coding	retained_intron	1	163	2	5.25006	5.929460000000001	6.60886	6.00443e-7	6.08177e-8	2.85621e-5	3.65138e-6
chr19	6532785	6532816	17213503	0	+	0.580645	(0.53,0.59]	chr19	1415916	1	CDS	CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.84332	5.929115	6.01491	1.90853e-6	6.18274e-7	7.59317e-5	2.65059e-5
chr1	116388901	116388960	423787	0	+	0.508475	(0.49,0.53]	chr1	41779	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000491156.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	141	2	3.96757	5.9287849999999995	7.89	6.21316e-5	1e-12	0.00134149	2.25522e-10
chr19	12876180	12876271	17471740	0	-	0.527473	(0.49,0.53]	chr19	1463249	2	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1:ENST00000592506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.52837	5.92872	6.32907	7.50805e-6	3.09658e-8	2.3779e-4	2.04921e-6
chr4	3352427	3352527	4691594	0	+	0.39	(0.36,0.39]	chr4	389490	90	INTRON	INTRON	RGS12	ENSG00000159788.19	ENST00000506631.5:ENST00000344733.9:ENST00000336727.7:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	105	2	5.89094	5.927725	5.96451	1.13061e-7	6.16085e-12	6.97642e-6	1.12783e-9
chr7	29943076	29943176	8747960	0	-	0.4	(0.39,0.42]	chr7	667416	18	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000409497.5:ENST00000434476.6:ENST00000421434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	4.63883	5.92684	7.21485	5.68159e-4	6.15075e-12	0.0077844	1.12704e-9
chr4	144118713	144118752	5696627	0	-	0.461538	(0.455,0.49]	chr4	451543	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	296	2	5.82832	5.926819999999999	6.02532	9.99512e-12	1e-12	1.90833e-9	2.25522e-10
chr19	23827555	23827654	17276789	0	+	0.494949	(0.49,0.53]	chr19	1427763	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	3	159	2	4.46698	5.926410000000001	7.38584	2.85894e-9	1.02651e-12	2.62069e-7	2.51656e-10
chr5	179609716	179609814	6413821	0	+	0.346939	(0.33,0.36]	chr5	499065	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393438.6:ENST00000437570.6:ENST00000508797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.57651	5.92591	6.27531	1.91451e-6	1.97595e-8	7.60536e-5	1.39155e-6
chr19	53874398	53874498	17388668	0	+	0.59	(0.53,0.59]	chr19	1446782	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000391769.2:ENST00000391768.2	protein_coding	protein_coding	protein_coding	protein_coding	2	148	2	4.66163	5.924715	7.1878	1.08822e-8	3.66411e-11	8.34238e-7	6.14726e-9
chr15	24911041	24911125	15161319	0	-	0.5	(0.49,0.53]	chr15	1193418	3	EXON_PSEUDO	EXON_PSEUDO	AC090602.2	ENSG00000242088.1	ENST00000469695.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	61	2	5.59114	5.923575	6.25601	5.02516e-6	5.54522e-8	1.7067e-4	3.37102e-6
chr2	63605938	63606028	1850132	0	+	0.455556	(0.455,0.49]	chr2	175436	1	CDS	CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6:ENST00000495083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	5.1878	5.923495	6.65919	7.39477e-9	6.68159e-10	5.99002e-7	8.04847e-8
chr19	10284864	10284946	17224640	0	+	0.548781	(0.53,0.59]	chr19	1418506	2	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	5.78329	5.9227050000000006	6.06212	4.23179e-7	5.11068e-11	2.1371e-5	7.48855e-9
chr17	81855141	81855223	16709622	0	-	0.451219	(0.42,0.455]	chr17	1377711	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	368	2	4.89821	5.922594999999999	6.94698	6.2061e-10	1e-12	7.55585e-8	2.25522e-10
chr7	6474183	6474233	8664795	0	-	0.28	[0,0.29]	chr7	662843	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	101	2	4.35034	5.92103	7.49172	2.4915e-7	1e-12	1.37456e-5	2.25522e-10
chrX	9568940	9569040	18567786	0	+	0.54	(0.53,0.59]	chrX	1586476	80	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.73957	5.920864999999999	6.10216	3.90343e-6	3.17557e-7	1.26306e-4	1.68263e-5
chr7	29072361	29072423	8745017	0	-	0.5	(0.49,0.53]	chr7	667271	2	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5:ENST00000458405.5:ENST00000447426.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.16557	5.92063	6.67569	6.36135e-5	1.65563e-9	0.00136069	1.6405e-7
chr1	160356259	160356347	496791	0	+	0.511364	(0.49,0.53]	chr1	53501	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000459963.5:ENST00000435149.1:ENST00000491390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	108	2	4.66371	5.920170000000001	7.17663	5.91374e-7	8.8568e-12	2.55031e-5	1.70817e-9
chr10	71819713	71819806	11563247	0	-	0.655914	(0.59,1]	chr10	879975	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000493143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	1646	2	5.83403	5.919825	6.00562	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	96350543	96350642	3612093	0	+	0.464646	(0.455,0.49]	chr3	310547	11	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	66	2	5.16215	5.919585	6.67702	5.04348e-5	1.25487e-9	0.00113788	1.28539e-7
chr19	580378	580433	17188305	0	+	0.672727	(0.59,1]	chr19	1410768	1	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	1798	2	5.74034	5.91855	6.09676	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	63589368	63589466	16317547	0	+	0.418367	(0.39,0.42]	chr17	1323671	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	199	2	5.52452	5.9182950000000005	6.31207	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	83746903	83746989	6674820	0	-	0.627907	(0.59,1]	chr5	515207	7	EXON_PSEUDO	EXON_PSEUDO	CTC-484M2.1	ENSG00000242858.1	ENST00000492855.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	83	2	5.4627	5.918265	6.37383	2.43542e-4	1.54311e-6	0.00399705	5.75816e-5
chr6	26250294	26250364	7647260	0	-	0.685714	(0.59,1]	chr6	582573	1	CDS	CDS:EXON_MRNA	H3C7	ENSG00000277775.2	ENST00000618052.2	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.4627	5.918265	6.37383	2.43542e-4	1.54311e-6	0.00399705	5.75816e-5
chr10	101364939	101365035	11664358	0	-	0.354167	(0.33,0.36]	chr10	889163	2	EXON_SMALL	EXON_SMALL	RNU2-59P	ENSG00000222414.1	ENST00000410482.1	snRNA	snRNA	snRNA	snRNA	0	50	2	5.73379	5.918205	6.10262	5.95199e-7	8.18754e-8	2.84227e-5	4.71056e-6
chr1	77129113	77129205	309374	0	+	0.456522	(0.455,0.49]	chr1	31621	1	EXON_PSEUDO	EXON_PSEUDO	RP4-706A16.3	ENSG00000226084.5	ENST00000471722.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	78	2	4.76048	5.9173100000000005	7.07414	3.99985e-4	2.99496e-11	0.00588767	4.62749e-9
chr1	193724400	193724500	635819	0	+	0.38	(0.36,0.39]	chr1	64356	450	INTRON	INTRON	RP11-563D10.1:RP11-21J7.1	ENSG00000227240.2:ENSG00000226640.2	ENST00000656143.1:ENST00000448412.2	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	4.98743	5.91669	6.84595	8.82225e-5	1.57072e-10	0.00178337	2.01477e-8
chr7	26213207	26213307	8183130	0	+	0.32	(0.29,0.33]	chr7	624437	11	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	5.70825	5.916655	6.12506	2.06649e-8	2.98388e-11	1.58157e-6	4.62267e-9
chr10	118932761	118932850	11716191	0	-	0.41573	(0.39,0.42]	chr10	893738	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-498J9.2:LDHAP5	ENSG00000229272.2:ENSG00000213574.2	ENST00000663084.1:ENST00000394996.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	91	2	5.00144	5.91536	6.82928	2.79286e-8	2.68628e-10	2.04912e-6	3.26662e-8
chr22	49527095	49527195	18543135	0	-	0.45	(0.42,0.455]	chr22	1583944	855	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	3	219	2	5.75007	5.915290000000001	6.08051	3.85527e-11	1e-12	5.83276e-9	2.46312e-10
chr13	23574116	23574215	13638797	0	+	0.343434	(0.33,0.36]	chr13	1075044	29	INTRON	INTRON	TNFRSF19	ENSG00000127863.16	ENST00000403372.6:ENST00000248484.9	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.39996	5.91474	6.42952	6.52649e-6	5.20927e-9	2.12073e-4	4.40801e-7
chr5	171366298	171366376	6384158	0	+	0.602564	(0.59,1]	chr5	495775	1	EXON_PSEUDO	EXON_PSEUDO:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPSAP71:RPL10P8	ENSG00000254256.1:ENSG00000254012.1	ENST00000522496.1:ENST00000522888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	79	2	5.88171	5.91433	5.94695	3.41939e-5	1.71208e-5	8.3505e-4	4.31898e-4
chr1	155667929	155668027	1310628	0	-	0.387755	(0.36,0.39]	chr1	132523	62	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	5.17127	5.9136500000000005	6.65603	7.36807e-9	1.99089e-10	5.97256e-7	2.7797e-8
chr1	42929209	42929261	967006	0	-	0.576923	(0.53,0.59]	chr1	101878	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	513	2	5.60321	5.913545	6.22388	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	10284487	10284572	17224634	0	+	0.670588	(0.59,1]	chr19	1418502	2	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.87418	5.913425	5.95267	2.5071e-5	2.38682e-5	6.18922e-4	5.82734e-4
chr7	10451504	10451601	8129132	0	+	0.43299	(0.42,0.455]	chr7	621313	3	EXON_PSEUDO	EXON_PSEUDO	HSPA8P8	ENSG00000229091.3	ENST00000419827.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	56	2	5.7838	5.9133949999999995	6.04299	1.6512e-6	1.1188e-7	6.0825e-5	6.92817e-6
chr21	34993548	34993648	18228807	0	-	0.55	(0.53,0.59]	chr21	1546951	1002	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.11707	5.911695	6.70632	1.35965e-4	2.74292e-9	0.00231202	2.75444e-7
chr11	18407116	18407132	11831562	0	+	0.375	(0.36,0.39]	chr11	906043	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.85844	5.911474999999999	5.96451	6.66729e-7	1.13061e-7	2.83187e-5	6.97642e-6
chr1	65592725	65592795	253227	0	+	0.457143	(0.455,0.49]	chr1	28815	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.32759	5.911054999999999	6.49452	1.92345e-5	6.22217e-9	5.18397e-4	5.13192e-7
chr10	9724121	9724219	11363858	0	-	0.44898	(0.42,0.455]	chr10	866616	23	EXON_PSEUDO	EXON_PSEUDO	HSP90AB7P	ENSG00000235838.1	ENST00000450068.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	5.44441	5.91095	6.37749	8.23077e-6	1.88677e-8	2.56136e-4	1.34393e-6
chr19	4492527	4492624	17206792	0	+	0.453608	(0.42,0.455]	chr19	1414889	3	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.88797	5.910575	5.93318	5.79703e-7	3.72505e-7	2.50873e-5	1.92638e-5
chr7	65974294	65974367	8834513	0	-	0.589041	(0.53,0.59]	chr7	674586	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1:ENST00000465785.5:ENST00000479038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	173	2	3.85383	5.90993	7.96603	5.99548e-6	1e-12	1.97492e-4	2.25522e-10
chr15	44715433	44715522	14899955	0	+	0.41573	(0.39,0.42]	chr15	1171702	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000560681.1:ENST00000559220.1:ENST00000561139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	440	2	5.71965	5.90957	6.09949	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	82850323	82850414	12499359	0	-	0.472527	(0.455,0.49]	chr11	971454	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.61055	5.909555	6.20856	3.16146e-6	6.55518e-8	1.16228e-4	3.89009e-6
chr11	62639358	62639375	12409862	0	-	0.529412	(0.49,0.53]	chr11	961319	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.32179	5.909395	6.497	2.63311e-5	7.74861e-9	6.73425e-4	6.22462e-7
chr19	16654034	16654125	17492637	0	-	0.450549	(0.42,0.455]	chr19	1466623	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTC-429P9.4:SMIM7	ENSG00000268790.5:ENSG00000214046.9	ENST00000593962.5:ENST00000601636.5:ENST00000595505.5:ENST00000593991.5:ENST00000593459.5:ENST00000594509.5:ENST00000600705.1:ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000463051.5:ENST00000461488.5:ENST00000358726.6:ENST00000594507.5:ENST00000461364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	99	2	5.70618	5.908575	6.11097	1.55657e-7	3.18512e-11	8.1934e-6	5.42205e-9
chr2	135848120	135848188	2897985	0	-	0.426471	(0.42,0.455]	chr2	258500	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1:ENST00000483902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	5.58564	5.908455	6.23127	3.24669e-6	6.12952e-8	1.18495e-4	3.67043e-6
chr1	84193332	84193432	332028	0	+	0.31	(0.29,0.33]	chr1	32668	78	INTRON	INTRON	PRKACB	ENSG00000142875.19	ENST00000370689.6:ENST00000370688.7:ENST00000370685.7:ENST00000470673.5:ENST00000370684.5:ENST00000436133.5:ENST00000610703.4:ENST00000370682.7:ENST00000394838.6:ENST00000446538.5:ENST00000432111.5:ENST00000450730.5:ENST00000370680.5:ENST00000413538.5:ENST00000417530.5:ENST00000394839.6:ENST00000614872.4:ENST00000610457.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	4.67256	5.90804	7.14352	6.52913e-7	3.3088e-12	3.08543e-5	6.52561e-10
chr13	25097395	25097495	13647297	0	+	0.5	(0.49,0.53]	chr13	1075795	12	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	4	310	2	5.47899	5.90666	6.33433	2.0226e-12	1e-12	4.57216e-10	2.25522e-10
chr15	88906625	88906701	15434362	0	-	0.407895	(0.39,0.42]	chr15	1220411	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000542878.5:ENST00000558029.5:ENST00000613965.1:ENST00000559259.1:ENST00000559997.5:ENST00000558352.5:ENST00000559770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	4.63883	5.906655	7.17448	5.68159e-4	9.26359e-12	0.0077844	1.62081e-9
chr11	6616817	6616859	12249954	0	-	0.5	(0.49,0.53]	chr11	946857	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	104	2	5.36265	5.90447	6.44629	8.18066e-9	1.68866e-9	7.15844e-7	1.66802e-7
chr11	62630600	62630678	12409763	0	-	0.615385	(0.59,1]	chr11	961275	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	1119	2	5.18723	5.90424	6.62125	2.4869e-12	1e-12	5.06796e-10	2.46312e-10
chr4	110051518	110051599	5595068	0	-	0.530864	(0.53,0.59]	chr4	446475	2	CDS	CDS:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	3	173	2	4.41143	5.9034200000000006	7.39541	6.37513e-9	4.99978e-12	5.2321e-7	1.02184e-9
chr21	5973142	5973233	18154292	0	-	0.549451	(0.53,0.59]	chr21	1541260	2	CDS	CDS:EXON_MRNA	CH507-42P11.1	ENSG00000274559.3	ENST00000464664.3	protein_coding	protein_coding	protein_coding	protein_coding	3	188	2	3.85631	5.90333	7.95035	6.71157e-7	1e-12	2.84686e-5	2.46312e-10
chr7	120988696	120988768	8493724	0	+	0.708333	(0.59,1]	chr7	648288	1	UTR5	UTR5:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	1	163	2	5.33523	5.90293	6.47063	1.37406e-6	3.34815e-8	5.74466e-5	2.18665e-6
chr20	5115448	5115510	17887788	0	-	0.483871	(0.455,0.49]	chr20	1514077	1	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	2	165	2	5.81271	5.902825	5.99294	1.87395e-11	1.67288e-12	3.04937e-9	3.87814e-10
chr2	54937903	54938003	1821654	0	+	0.42	(0.39,0.42]	chr2	173841	88	INTRON	INTRON	EML6	ENSG00000214595.12	ENST00000673912.1:ENST00000356458.7:ENST00000673695.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.29502	5.90277	6.51052	1.68146e-5	4.78431e-9	4.64895e-4	4.08907e-7
chr9	99982611	99982711	10772530	0	-	0.46	(0.455,0.49]	chr9	815418	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	2	140	2	4.07638	5.90132	7.72626	1.0208e-6	1e-12	4.50492e-5	2.25522e-10
chr22	37679602	37679649	18363212	0	+	0.595745	(0.59,1]	chr22	1561881	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LGALS1	ENSG00000100097.12	ENST00000215909.10:ENST00000425542.5:ENST00000454173.1:ENST00000489315.5:ENST00000472321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	282	2	5.71457	5.899735	6.0849	1.19649e-5	2.50867e-11	3.513e-4	3.95853e-9
chr1	109411061	109411113	1220464	0	-	0.461538	(0.455,0.49]	chr1	119079	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.4037	5.8987549999999995	6.39381	1.20695e-5	1.45725e-8	3.52389e-4	1.07259e-6
chr5	178055562	178055659	6410843	0	+	0.608247	(0.59,1]	chr5	498581	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	FAM153CP:RP11-889L3.1	ENSG00000204677.13:ENSG00000218227.3	ENST00000652765.1:ENST00000651508.1:ENST00000652706.2:ENST00000511189.3:ENST00000652372.1:ENST00000651413.2:ENST00000651496.2:ENST00000652760.2:ENST00000651248.2:ENST00000662167.1:ENST00000652262.2:ENST00000669380.1:ENST00000652571.2:ENST00000651447.2:ENST00000651969.2:ENST00000668044.1:ENST00000663123.1:ENST00000651697.2:ENST00000652167.1:ENST00000652694.2:ENST00000663505.1:ENST00000667131.1:ENST00000651398.2:ENST00000511511.6:ENST00000506096.6:ENST00000651406.1:ENST00000652057.1:ENST00000652464.2:ENST00000511819.6:ENST00000477964.1	lncRNA	retained_intron	lncRNA:transcribed_processed_pseudogene	retained_intron:lncRNA:transcribed_processed_pseudogene	2	333	2	5.39269	5.898745	6.4048	3.17187e-8	9.40581e-12	2.29924e-6	1.64076e-9
chr7	107752344	107752444	8457062	0	+	0.35	(0.33,0.36]	chr7	646224	4	SS3_PROX	SS3_PROX:INTRON	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000432748.5:ENST00000487517.1:ENST00000493361.5:ENST00000415884.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	5.61642	5.8977	6.17898	2.97369e-6	1.46676e-8	9.99199e-5	1.17924e-6
chr1	43364323	43364391	968545	0	-	0.514706	(0.49,0.53]	chr1	102054	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	0	61	2	5.46274	5.895905	6.32907	1.13094e-5	3.09658e-8	3.3464e-4	2.04921e-6
chrX	119236615	119236691	18840402	0	+	0.592105	(0.59,1]	chrX	1605465	3	CDS	CDS:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	1	158	2	4.68441	5.89506	7.10571	2.49298e-6	2.47959e-8	8.66637e-5	1.84654e-6
chr1	111449463	111449541	407233	0	+	0.538462	(0.53,0.59]	chr1	40159	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	5.21795	5.894075	6.5702	8.67811e-9	8.55645e-9	7.38823e-7	6.8555e-7
chr7	100580873	100580953	8951933	0	-	0.4875	(0.455,0.49]	chr7	684088	1	INTRON	INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.79143	5.893705000000001	5.99598	8.96581e-7	3.33072e-7	4.03386e-5	1.56608e-5
chr1	86903280	86903364	1144918	0	-	0.47619	(0.455,0.49]	chr1	113756	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	327	2	5.28736	5.89277	6.49818	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	29523265	29523339	13945316	0	-	0.648649	(0.59,1]	chr13	1094584	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.76827	5.892245	6.01622	5.97759e-5	1.18141e-5	0.00130766	3.14877e-4
chr11	1754080	1754167	12230428	0	-	0.689655	(0.59,1]	chr11	944383	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000497544.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	158	2	5.17502	5.89194	6.60886	6.00443e-7	1.02099e-7	2.85621e-5	5.67476e-6
chr18	3025227	3025307	16985757	0	-	0.5375	(0.53,0.59]	chr18	1396592	3	EXON_PSEUDO	EXON_PSEUDO	RP11-193E15.4	ENSG00000277447.1	ENST00000618479.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	65	2	5.46762	5.891565	6.31551	1.97761e-5	6.83735e-8	5.29643e-4	4.03413e-6
chr8	72104065	72104165	9400355	0	+	0.54	(0.53,0.59]	chr8	717874	271	INTRON	INTRON	MSC-AS1	ENSG00000235531.11	ENST00000518916.5	lncRNA	lncRNA	lncRNA	lncRNA	0	76	2	4.95825	5.891444999999999	6.82464	2.87508e-4	1.06121e-9	0.00457439	1.10387e-7
chr9	125241004	125241026	10856276	0	-	0.636364	(0.59,1]	chr9	822395	1	CDS	CDS:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	168	2	5.49183	5.891225	6.29062	3.87694e-6	1.09136e-8	1.37159e-4	8.34724e-7
chr17	63756519	63756570	16634775	0	-	0.333333	(0.33,0.36]	chr17	1367594	2	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	129	2	4.81974	5.89085	6.96196	5.74917e-11	5.25191e-12	8.30895e-9	1.0671e-9
chr11	125543743	125543842	12642709	0	-	0.484848	(0.455,0.49]	chr11	981525	476	INTRON	INTRON	FEZ1	ENSG00000149557.14	ENST00000648911.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.16215	5.89043	6.61871	5.04348e-5	2.11003e-9	0.00113788	2.02462e-7
chr1	207677478	207677568	689156	0	+	0.455556	(0.455,0.49]	chr1	69971	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CR1L	ENSG00000197721.17	ENST00000531844.5:ENST00000508064.7:ENST00000430248.5:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	109	2	5.7773	5.8896250000000006	6.00195	1.86149e-7	2.68753e-11	1.07114e-5	4.20839e-9
chr17	38767490	38767590	16531563	0	-	0.33	(0.29,0.33]	chr17	1353342	19	UTR3	UTR3:EXON_MRNA	PIP4K2B	ENSG00000276293.5	ENST00000619039.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	5.13934	5.889475	6.63961	8.37337e-9	1.3519e-10	6.64842e-7	1.96366e-8
chr8	74603516	74603607	9894970	0	-	0.461538	(0.455,0.49]	chr8	748013	4	EXON_PSEUDO	EXON_PSEUDO	PCBP2P2	ENSG00000253341.1	ENST00000517662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	66	2	5.07172	5.888515	6.70531	8.3067e-5	9.72532e-10	0.00171126	1.02291e-7
chr2	239914389	239914489	3244892	0	-	0.39	(0.36,0.39]	chr2	285963	10	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.12054	5.888285	6.65603	7.15553e-5	1.99089e-10	0.00137393	2.7797e-8
chr12	50929913	50929981	12875829	0	+	0.485294	(0.455,0.49]	chr12	1000528	1	CDS	CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000550502.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	96	2	4.91224	5.88828	6.86432	6.63701e-8	2.24717e-10	4.34166e-6	2.793e-8
chr1	161454982	161455082	1333746	0	-	0.72	(0.59,1]	chr1	136938	141	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	75	8764	2	5.72837	5.887805	6.04724	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	12939563	12939631	17238349	0	+	0.426471	(0.42,0.455]	chr19	1421047	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000587486.6:ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000590325.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	951	2	5.70863	5.8877950000000006	6.06696	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	37089574	37089672	16523357	0	-	0.561224	(0.53,0.59]	chr17	1352046	1	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4:ENST00000613776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	1291	2	4.62015	5.88713	7.15411	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	29524192	29524253	13945328	0	-	0.540984	(0.53,0.59]	chr13	1094590	2	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.52766	5.886839999999999	6.24602	1.38993e-5	1.15746e-7	3.94563e-4	6.3314e-6
chr6	26104047	26104103	7101126	0	+	0.571429	(0.53,0.59]	chr6	542788	1	CDS	CDS:EXON_MRNA	H4C3	ENSG00000197061.5	ENST00000377803.4	protein_coding	protein_coding	protein_coding	protein_coding	4	333	2	5.76349	5.886225	6.00896	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	6573754	6573852	9682916	0	-	0.44898	(0.42,0.455]	chr8	733421	13	EXON_LNCRNA	EXON_LNCRNA	RP11-16G12.1	ENSG00000288076.1	ENST00000670781.1	lncRNA	lncRNA	lncRNA	lncRNA	0	84	2	4.54792	5.884775	7.22163	9.66045e-4	8.33278e-12	0.0115185	1.47872e-9
chr4	869174	869272	5276274	0	-	0.489796	(0.455,0.49]	chr4	424387	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	5.20864	5.883295	6.55795	4.80749e-9	3.59716e-9	4.46041e-7	3.19904e-7
chr11	90282843	90282938	12059327	0	+	0.547368	(0.53,0.59]	chr11	929980	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	261	2	5.80972	5.882955000000001	5.95619	9.01745e-12	1e-12	1.73595e-9	2.25522e-10
chr19	18175604	18175697	17257691	0	+	0.505376	(0.49,0.53]	chr19	1425241	1	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	163	2	4.9339	5.8826599999999996	6.83142	2.582e-10	2.82293e-11	3.48617e-8	4.40264e-9
chr12	110346370	110346470	13085913	0	+	0.49	(0.455,0.49]	chr12	1020553	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	102	2	4.58536	5.882045	7.17873	9.22269e-7	1.0606e-11	4.12764e-5	1.8327e-9
chr2	69776402	69776502	1876905	0	+	0.37	(0.36,0.39]	chr2	177161	339	INTRON	INTRON	ANXA4	ENSG00000196975.16	ENST00000418066.2:ENST00000477632.5:ENST00000409920.5:ENST00000460439.5:ENST00000460942.5:ENST00000635311.1:ENST00000487351.6:ENST00000394295.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	4.86603	5.882	6.89797	1.68962e-4	9.49028e-11	0.00297945	1.29945e-8
chr20	1277356	1277456	17646612	0	+	0.47	(0.455,0.49]	chr20	1491668	102	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.30391	5.881805	6.4597	3.12735e-5	4.13431e-9	6.97306e-4	3.93595e-7
chr17	51166404	51166410	16266597	0	+	0.833333	(0.59,1]	chr17	1319603	1	SS3_PROX	SS3_PROX:INTRON	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.55681	5.881444999999999	6.20608	1.60495e-4	4.1102e-6	0.00286914	1.31763e-4
chr4	87893916	87894015	4942255	0	+	0.535354	(0.53,0.59]	chr4	406011	22	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	78	2	4.86823	5.881325	6.89442	4.35895e-4	5.75684e-10	0.00623608	6.40452e-8
chr1	173485433	173485507	548593	0	+	0.554054	(0.53,0.59]	chr1	58291	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	157	2	4.053	5.87965	7.7063	1.44202e-6	1e-12	5.98092e-5	2.25522e-10
chr20	32145367	32145423	17752422	0	+	0.446429	(0.42,0.455]	chr20	1498486	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.61714	5.877465	6.13779	4.98624e-6	5.19796e-8	1.54467e-4	3.50456e-6
chr5	96793802	96793879	6721291	0	-	0.467532	(0.455,0.49]	chr5	517457	1	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.85155	5.87604	5.90053	9.4476e-7	4.02654e-7	3.80876e-5	2.05231e-5
chr1	30739808	30739872	915624	0	-	0.65625	(0.59,1]	chr1	95887	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	163	2	4.42593	5.875325	7.32472	1.38583e-5	2.79623e-9	3.94563e-4	2.57422e-7
chr1	179966892	179966992	580947	0	+	0.42	(0.39,0.42]	chr1	60272	114	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	5.11564	5.875185	6.63473	9.85934e-9	1.60065e-9	8.41581e-7	1.59782e-7
chr6	49618142	49618218	7729733	0	-	0.486842	(0.455,0.49]	chr6	592974	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	1166	2	5.73273	5.874915	6.0171	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	20654296	20654371	882269	0	-	0.586667	(0.53,0.59]	chr1	91128	2	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	2	147	2	5.01731	5.87469	6.73207	2.20251e-9	4.36414e-10	2.2752e-7	5.03828e-8
chrX	77875427	77875512	19129454	0	-	0.482353	(0.455,0.49]	chrX	1626907	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1:ENST00000373336.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	99	2	5.43504	5.872275	6.30951	1.52819e-8	7.67585e-10	1.21924e-6	8.29092e-8
chr4	86950024	86950113	5516774	0	-	0.550562	(0.53,0.59]	chr4	441809	5	EXON_PSEUDO	EXON_PSEUDO	TECRP1	ENSG00000235043.3	ENST00000513307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	118	2	5.60071	5.870915	6.14112	2.39342e-7	2.86364e-10	1.32863e-5	3.46419e-8
chr17	42131406	42131506	16546007	0	-	0.42	(0.39,0.42]	chr17	1356980	4	SS5_PROX	SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000552162.5:ENST00000546881.1:ENST00000550504.5:ENST00000550406.1:ENST00000550013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.70692	5.87089	6.03486	2.36087e-6	8.33472e-8	8.27472e-5	5.31572e-6
chr10	71820239	71820335	11563253	0	-	0.479167	(0.455,0.49]	chr10	879979	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000493143.1:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	753	2	5.73534	5.868625	6.00191	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	7930560	7930642	13193278	0	-	0.487805	(0.455,0.49]	chr12	1033509	2	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	311	2	4.76836	5.867225	6.96609	1.47804e-12	1e-12	3.48865e-10	2.25522e-10
chr8	30117383	30117482	9780665	0	-	0.424242	(0.42,0.455]	chr8	739549	1	EXON_PSEUDO	EXON_PSEUDO	RPS15AP24	ENSG00000241511.1	ENST00000492525.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	5.28783	5.8666149999999995	6.4454	2.17539e-5	1.07351e-8	5.73422e-4	8.24229e-7
chr3	196072073	196072144	4663386	0	-	0.352113	(0.33,0.36]	chr3	385629	2	CDS	CDS:UTR3:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	224	2	5.12108	5.86511	6.60914	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	44075865	44075943	16234050	0	+	0.615385	(0.59,1]	chr17	1314332	3	CDS	CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.2538	5.86476	6.47572	5.85045e-4	8.33464e-7	0.00793559	3.41653e-5
chr9	5098266	5098340	10167585	0	+	0.283784	[0,0.29]	chr9	765718	2	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.07045	5.863985	6.65752	5.08054e-5	3.74154e-10	0.00114377	4.3907e-8
chr3	14457949	14458015	3320547	0	+	0.606061	(0.59,1]	chr3	292233	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.67437	5.863664999999999	6.05296	6.83706e-5	1.41714e-5	0.00132577	4.01358e-4
chr11	119052361	119052429	12626515	0	-	0.455882	(0.455,0.49]	chr11	979807	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	119	2	4.0992	5.862715	7.62623	2.73975e-5	1e-12	6.95757e-4	2.25522e-10
chr1	111493154	111493253	1225109	0	-	0.474747	(0.455,0.49]	chr1	120015	20	INTRON	INTRON	TMIGD3	ENSG00000121933.19	ENST00000369717.8:ENST00000369716.9:ENST00000443498.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.76048	5.86092	6.96136	3.99985e-4	8.94937e-11	0.00588767	1.23264e-8
chr1	147178651	147178746	453647	0	+	0.4	(0.39,0.42]	chr1	45093	9	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	1	115	2	4.09419	5.860825	7.62746	2.95839e-5	1e-12	7.34143e-4	2.25522e-10
chr19	23597424	23597508	17276123	0	+	0.416667	(0.39,0.42]	chr19	1427737	2	EXON_PSEUDO	EXON_PSEUDO:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-359H18.2:RPS27P29	ENSG00000268455.1:ENSG00000240231.1	ENST00000600110.1:ENST00000463110.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	0	54	2	5.53713	5.860785	6.18444	3.48373e-6	7.14249e-8	1.26023e-4	4.18382e-6
chr6	43054373	43054439	7706877	0	-	0.575758	(0.53,0.59]	chr6	591188	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP1-20C7.7:MRPL2	ENSG00000288564.1:ENSG00000112651.12	ENST00000673761.1:ENST00000388752.8:ENST00000230413.9:ENST00000485654.1:ENST00000489623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.5853	5.860195	6.13509	9.83355e-6	2.62487e-7	2.98194e-4	1.27527e-5
chr8	97815303	97815401	9506849	0	+	0.408163	(0.39,0.42]	chr8	722744	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.74171	5.85956	6.97741	2.6028e-7	6.52962e-11	1.4243e-5	9.30963e-9
chr19	54212040	54212140	17390508	0	+	0.42	(0.39,0.42]	chr19	1447221	45	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	115	2	4.44498	5.859165	7.27335	4.68328e-8	3.37319e-12	3.22522e-6	6.63759e-10
chr19	19132419	19132508	17502189	0	-	0.550562	(0.53,0.59]	chr19	1468676	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587096.5:ENST00000590216.6:ENST00000592369.1:ENST00000587915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.74558	5.85905	5.97252	3.61407e-6	8.30115e-7	1.29307e-4	3.4056e-5
chr5	86617940	86617997	6073028	0	+	0.508772	(0.49,0.53]	chr5	476379	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	COX7C	ENSG00000127184.13	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	777	2	5.025	5.857915	6.69083	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	83108384	83108484	15417379	0	-	0.59	(0.53,0.59]	chr15	1219243	4	SS5_PROX	SS5_PROX:INTRON	RP11-382A20.8	ENSG00000286872.1	ENST00000659954.1	lncRNA	lncRNA	lncRNA	lncRNA	4	427	2	4.75186	5.857275	6.96269	4.80296e-9	1e-12	4.45871e-7	2.25522e-10
chr4	108657449	108657548	5038465	0	+	0.393939	(0.39,0.42]	chr4	409862	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000510556.1:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	130	2	4.47918	5.8568999999999996	7.23462	1.78611e-9	5.03186e-12	1.88992e-7	9.4516e-10
chr8	69601929	69602029	9390047	0	+	0.37	(0.36,0.39]	chr8	717458	1	SS5_PROX	SS5_PROX:INTRON	SULF1	ENSG00000137573.14	ENST00000458141.6:ENST00000260128.8:ENST00000419716.7:ENST00000616868.1:ENST00000402687.9:ENST00000521946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.86603	5.85599	6.84595	1.68962e-4	1.57072e-10	0.00297945	2.01477e-8
chr16	30756354	30756437	15631414	0	+	0.638554	(0.59,1]	chr16	1240615	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHKG2	ENSG00000156873.16	ENST00000565924.5:ENST00000424889.7:ENST00000564838.5:ENST00000563588.6:ENST00000328273.11:ENST00000563913.5:ENST00000565897.5:ENST00000569684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	1209	2	5.05673	5.8557749999999995	6.65482	3.65893e-11	1e-12	6.1435e-9	2.25522e-10
chr11	125609433	125609511	12194421	0	+	0.487179	(0.455,0.49]	chr11	940762	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000531001.1:ENST00000524639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	343	2	5.56706	5.8553	6.14354	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	63752740	63752799	16634731	0	-	0.40678	(0.39,0.42]	chr17	1367576	1	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	87	2	4.96127	5.85518	6.74909	3.99353e-8	5.66329e-10	2.81235e-6	6.31253e-8
chr1	121118277	121118360	1259540	0	-	0.686747	(0.59,1]	chr1	123390	2	EXON_PSEUDO	EXON_PSEUDO	H3P4	ENSG00000213244.3	ENST00000401004.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	76	2	5.75764	5.855155	5.95267	4.53637e-5	2.38682e-5	9.4617e-4	6.18922e-4
chr1	161531089	161531189	500668	0	+	0.55	(0.53,0.59]	chr1	54270	43	INTRON	INTRON	RP11-25K21.6	ENSG00000273112.1	ENST00000537821.2	lncRNA	lncRNA	lncRNA	lncRNA	194	12916	2	5.80757	5.854765	5.90196	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	155870722	155870796	3823970	0	+	0.689189	(0.59,1]	chr3	326136	2	UTR5	UTR5:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	4.58853	5.85409	7.11965	5.46127e-6	1.20696e-8	1.8199e-4	9.09817e-7
chr1	241508669	241508736	1577483	0	-	0.373134	(0.36,0.39]	chr1	157531	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.84108	5.84976	5.85844	6.66729e-7	3.0375e-7	2.83187e-5	1.62555e-5
chr1	65605137	65605237	253356	0	+	0.44	(0.42,0.455]	chr1	28843	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	5.16062	5.84838	6.53614	9.87381e-9	1.60905e-9	7.68928e-7	1.7333e-7
chr1	11964643	11964714	45393	0	+	0.521127	(0.49,0.53]	chr1	5775	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000470133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	107	2	5.63525	5.847195	6.05914	1.86307e-7	1.28378e-10	1.07114e-5	1.68887e-8
chr9	133123639	133123739	10879214	0	-	0.48	(0.455,0.49]	chr9	825573	25	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.69105	5.8465	6.00195	2.83777e-6	1.86149e-7	9.62519e-5	1.07114e-5
chr2	180873231	180873322	3053605	0	-	0.417582	(0.39,0.42]	chr2	270960	5	EXON_PSEUDO	EXON_PSEUDO	FTH1P20	ENSG00000226564.1	ENST00000434913.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	101	2	5.7112	5.8462250000000004	5.98125	1.28715e-7	4.8443e-11	7.78377e-6	7.1372e-9
chr11	1753502	1753602	12230420	0	-	0.62	(0.59,1]	chr11	944376	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636579.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	367	2	4.90309	5.84598	6.78887	8.07901e-7	1e-12	3.69771e-5	2.25522e-10
chr1	52024509	52024579	1018100	0	-	0.457143	(0.455,0.49]	chr1	105403	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000648686.1:ENST00000472624.5:ENST00000471493.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.4037	5.84462	6.28554	1.20695e-5	3.54381e-8	3.52389e-4	2.29553e-6
chr3	132229133	132229233	4457577	0	-	0.4	(0.39,0.42]	chr3	370292	1885	INTRON	INTRON	CPNE4	ENSG00000196353.12	ENST00000512055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.70692	5.844085	5.98125	2.36087e-6	1.28715e-7	8.27472e-5	7.78377e-6
chr5	10410138	10410207	5875285	0	+	0.521739	(0.49,0.53]	chr5	462001	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	97	2	4.98392	5.843675	6.70343	4.13969e-8	1.29474e-9	2.89671e-6	1.3204e-7
chr14	100334974	100335036	14788505	0	-	0.548387	(0.53,0.59]	chr14	1158693	1	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.12301	5.843579999999999	6.56415	1.2852e-4	9.5574e-9	0.00241206	7.4729e-7
chr14	76635365	76635463	14712544	0	-	0.510204	(0.49,0.53]	chr14	1152724	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187O7.3:RPSAP3	ENSG00000259124.1:ENSG00000242952.1	ENST00000554926.1:ENST00000464073.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	0	59	2	5.39399	5.843495	6.293	1.71804e-5	4.1349e-8	4.72485e-4	2.61265e-6
chr2	8679948	8680047	2504442	0	-	0.454545	(0.42,0.455]	chr2	225859	9	INTRON	INTRON	ID2-AS1	ENSG00000235092.6	ENST00000455965.6:ENST00000453900.2	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	4.91213	5.841385000000001	6.77064	1.75074e-4	6.24308e-10	0.00306313	6.87794e-8
chr17	68046682	68046768	16333854	0	+	0.360465	(0.36,0.39]	chr17	1325141	2	UTR3	UTR3:EXON_MRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	219	2	4.90663	5.84134	6.77605	1.75123e-11	1e-12	3.13172e-9	2.25522e-10
chr16	74606825	74606909	16032570	0	-	0.654762	(0.59,1]	chr16	1287399	3	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.338	5.84119	6.34438	3.196e-4	2.85814e-6	0.00457916	1.07102e-4
chr8	30352162	30352259	9253454	0	+	0.515464	(0.49,0.53]	chr8	708964	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	104	2	5.53641	5.840870000000001	6.14533	9.58343e-8	3.32616e-10	6.01659e-6	3.95379e-8
chr6	122447192	122447265	7923755	0	-	0.410959	(0.39,0.42]	chr6	606814	2	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	151	2	3.78216	5.84069	7.89922	1.10025e-6	1e-12	4.77781e-5	2.25522e-10
chr1	161506541	161506641	500406	0	+	0.65	(0.59,1]	chr1	54214	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000482233.1:ENST00000467525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	151	2	4.70589	5.840675	6.97546	2.18349e-6	5.89478e-8	7.71032e-5	3.91747e-6
chr12	28214519	28214619	12804988	0	+	0.32	(0.29,0.33]	chr12	994517	151	INTRON	INTRON	CCDC91	ENSG00000123106.10	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000536442.5:ENST00000544649.5:ENST00000545336.5:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	44	2	5.77715	5.840484999999999	5.90382	3.88822e-7	3.10438e-7	1.99593e-5	1.47195e-5
chr16	15932194	15932294	15867426	0	-	0.55	(0.53,0.59]	chr16	1268290	6	EXON_PSEUDO	EXON_PSEUDO	RPL15P20	ENSG00000215003.4	ENST00000482912.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	5.8373100000000004	5.840315	5.84332	2.06883e-6	1.90853e-6	7.59317e-5	7.35008e-5
chrX	87703629	87703724	19141900	0	-	0.578947	(0.53,0.59]	chrX	1627927	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	5.8373100000000004	5.840315	5.84332	2.06883e-6	1.90853e-6	7.59317e-5	7.35008e-5
chr2	200780592	200780690	3119615	0	-	0.469388	(0.455,0.49]	chr2	275261	2	EXON_LNCRNA	EXON_LNCRNA	BZW1-AS1	ENSG00000230408.3	ENST00000447972.3	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	4.97525	5.84028	6.70531	1.38474e-4	9.72532e-10	0.00254294	1.02291e-7
chr1	42929261	42929314	967007	0	-	0.566038	(0.53,0.59]	chr1	101878	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	602	2	5.02011	5.839729999999999	6.65935	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	90266204	90266287	15098915	0	+	0.53012	(0.53,0.59]	chr15	1187922	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-697E2.6:NGRN	ENSG00000261147.1:ENSG00000182768.9	ENST00000561573.1:ENST00000331497.3:ENST00000379095.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.79528	5.8395399999999995	5.8838	2.61912e-6	1.51824e-6	9.89086e-5	5.67784e-5
chr3	133811116	133811199	3752417	0	+	0.493976	(0.49,0.53]	chr3	321388	1	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.24579	5.83897	6.43215	4.073e-5	1.33302e-8	9.64741e-4	9.93516e-7
chrX	66200686	66200752	18717630	0	+	0.515152	(0.49,0.53]	chrX	1597011	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.24579	5.83897	6.43215	4.073e-5	1.33302e-8	9.64741e-4	9.93516e-7
chr11	838132	838192	11759165	0	+	0.516667	(0.49,0.53]	chr11	898602	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CD151	ENSG00000177697.19	ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000532045.6:ENST00000530726.5:ENST00000528011.2:ENST00000525181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.66172	5.837875	6.01403	3.99372e-6	2.61944e-7	1.28691e-4	1.42854e-5
chr11	119026602	119026688	12626352	0	-	0.604651	(0.59,1]	chr11	979715	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.75764	5.837635000000001	5.91763	4.53637e-5	2.85329e-5	9.4617e-4	7.16403e-4
chr17	44350690	44350745	16234913	0	+	0.672727	(0.59,1]	chr17	1314571	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000588237.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1:ENST00000586443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.55681	5.83554	6.11427	1.60495e-4	6.89731e-6	0.00286914	0.00020353099999999999
chr1	161509904	161509989	500441	0	+	0.458824	(0.455,0.49]	chr1	54221	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	171	2	5.32307	5.83518	6.34729	1.64538e-9	1e-12	1.76334e-7	2.25522e-10
chr19	14565065	14565123	17243468	0	+	0.672414	(0.59,1]	chr19	1422058	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	203	2	4.58245	5.835134999999999	7.08782	1.81834e-7	1.50752e-8	1.05501e-5	1.1047e-6
chr8	30352743	30352840	9253460	0	+	0.525773	(0.49,0.53]	chr8	708964	10	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	170	2	4.35633	5.8347750000000005	7.31322	1.06794e-9	2.18203e-12	1.10954e-7	4.88497e-10
chr3	49359235	49359332	4174063	0	-	0.525773	(0.49,0.53]	chr3	350894	2	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	13	613	2	4.97268	5.83417	6.69566	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	8437341	8437440	18041917	0	+	0.525253	(0.49,0.53]	chr21	1530900	43	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	1365	76899	2	5.58755	5.833970000000001	6.08039	1.75115e-12	1e-12	3.72528e-10	2.46312e-10
chr5	177337362	177337443	6991102	0	-	0.691358	(0.59,1]	chr5	534735	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000502721.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	206	2	4.8734	5.8337699999999995	6.79414	1.89941e-7	1.7094e-8	1.08933e-5	1.23244e-6
chr1	111183461	111183524	406207	0	+	0.444444	(0.42,0.455]	chr1	39906	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1:ENST00000483427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.28783	5.83266	6.37749	2.17539e-5	1.88677e-8	5.73422e-4	1.34393e-6
chrX	74583472	74583572	19117437	0	-	0.47	(0.455,0.49]	chrX	1626323	6	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	RLIM:PABPC1P3	ENSG00000131263.13:ENSG00000230673.3	ENST00000332687.11:ENST00000469174.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	184	2	5.08436	5.832610000000001	6.58086	1.48503e-8	1e-12	1.18753e-6	2.25522e-10
chr12	57696274	57696297	12904088	0	+	0.521739	(0.49,0.53]	chr12	1005867	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000550848.5:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000549307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.16557	5.831284999999999	6.497	6.36135e-5	7.74861e-9	0.00136069	6.22462e-7
chr6	27814453	27814546	7649609	0	-	0.623656	(0.59,1]	chr6	582806	1	CDS	CDS:EXON_MRNA	H2AC14	ENSG00000276368.2	ENST00000333151.5	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	4.78875	5.829090000000001	6.86943	1.30092e-6	1.17453e-7	5.00075e-5	7.21761e-6
chr1	42928982	42929033	967003	0	-	0.666667	(0.59,1]	chr1	101876	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	726	2	5.62667	5.828125	6.02958	3.56748e-12	1e-12	7.57266e-10	2.25522e-10
chr3	133819552	133819609	3752504	0	+	0.578947	(0.53,0.59]	chr3	321406	1	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.64073	5.82782	6.01491	7.00135e-6	6.18274e-7	2.25852e-4	2.65059e-5
chr5	132217272	132217348	6833709	0	-	0.539474	(0.53,0.59]	chr5	522734	2	CDS	CDS:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5:ENST00000395164.5:ENST00000453286.5:ENST00000418055.5:ENST00000478055.1:ENST00000416053.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.33948	5.827495	6.31551	4.08763e-5	6.83735e-8	9.64741e-4	4.03413e-6
chr11	66348070	66348170	11989836	0	+	0.5	(0.49,0.53]	chr11	921672	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RP11-867G23.8	ENSG00000255468.7	ENST00000531602.1:ENST00000581155.5	lncRNA	lncRNA	lncRNA	lncRNA	248	14110	2	5.37694	5.826865	6.27679	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	19963565	19963658	18296468	0	+	0.655914	(0.59,1]	chr22	1553002	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	COMT:MIR4761	ENSG00000093010.15:ENSG00000284031.1	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000678240.1:ENST00000677675.1:ENST00000585066.1:ENST00000493893.1:ENST00000678945.1:ENST00000677564.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	3	240	2	4.05409	5.82584	7.59759	8.07233e-7	3.70508e-10	3.69595e-5	4.35231e-8
chr19	12875989	12876089	17471738	0	-	0.56	(0.53,0.59]	chr19	1463248	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.40497	5.825495	6.24602	2.83308e-5	1.15746e-7	7.12614e-4	6.3314e-6
chr8	87261294	87261394	9462805	0	+	0.5	(0.49,0.53]	chr8	720381	238	INTRON	INTRON	CNBD1	ENSG00000176571.12	ENST00000518476.6:ENST00000522427.1:ENST00000620844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.32179	5.82543	6.32907	2.63311e-5	3.09658e-8	6.73425e-4	2.04921e-6
chr12	49269827	49269894	12865684	0	+	0.537313	(0.53,0.59]	chr12	999056	1	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	411	2	5.47322	5.8253900000000005	6.17756	4.83291e-12	1e-12	9.93568e-10	2.25522e-10
chr21	45511110	45511168	18145939	0	+	0.62069	(0.59,1]	chr21	1539860	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.41325	5.824339999999999	6.23543	3.01546e-4	3.47367e-6	0.00472028	1.13687e-4
chr19	46778830	46778908	17595498	0	-	0.576923	(0.53,0.59]	chr19	1481400	3	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	6	450	2	5.66981	5.82432	5.97883	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	7819481	7819544	13192405	0	-	0.412698	(0.39,0.42]	chr12	1033387	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.20435	5.824255	6.44416	2.91423e-5	8.46338e-9	7.26551e-4	6.69855e-7
chr10	118932273	118932373	11716186	0	-	0.43	(0.42,0.455]	chr10	893737	598	INTRON	INTRON	RP11-498J9.2	ENSG00000229272.2	ENST00000663084.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.20268	5.82404	6.4454	3.59669e-5	1.07351e-8	8.71318e-4	8.24229e-7
chr18	4892386	4892486	16998585	0	-	0.45	(0.42,0.455]	chr18	1397022	840	INTRON	INTRON	RP11-172F10.1	ENSG00000266268.5	ENST00000585028.5:ENST00000584204.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	5.01562	5.823715	6.63181	1.01971e-4	2.16358e-9	0.0019861	2.06464e-7
chr11	65130314	65130379	12421664	0	-	0.692308	(0.59,1]	chr11	963744	2	CDS	CDS:EXON_MRNA:PRIMIRNA	SYVN1:MIR6751	ENSG00000162298.19:ENSG00000284489.1	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000610479.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	81	2	5.19648	5.8237000000000005	6.45092	7.35336e-4	9.69699e-7	0.00921643	3.89355e-5
chr16	85400837	85400937	15795326	0	+	0.51	(0.49,0.53]	chr16	1256986	415	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.5439	5.82339	6.10288	8.44877e-6	1.33258e-7	2.39255e-4	8.01671e-6
chr11	837538	837618	11759156	0	+	0.5875	(0.53,0.59]	chr11	898594	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000529810.5:ENST00000532045.6:ENST00000527341.5:ENST00000530726.5:ENST00000528011.2:ENST00000532075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	106	2	5.04668	5.8225750000000005	6.59847	3.63266e-8	6.77695e-9	2.34568e-6	6.05701e-7
chr6	31861274	31861362	7662797	0	-	0.511364	(0.49,0.53]	chr6	585398	2	CDS	CDS:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.24579	5.822195000000001	6.3986	4.073e-5	1.75841e-8	9.64741e-4	1.26398e-6
chr6	33428032	33428130	7122132	0	+	0.857143	(0.59,1]	chr6	547708	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SYNGAP1	ENSG00000197283.18	ENST00000638142.2:ENST00000646630.1:ENST00000629380.3:ENST00000479510.2:ENST00000644458.1:ENST00000449372.7:ENST00000418600.7:ENST00000628646.2:ENST00000293748.9:ENST00000636731.1:ENST00000638127.1:ENST00000637721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	304	2	5.27246	5.821495	6.37053	2.4605e-6	6.78619e-11	9.40752e-5	9.64784e-9
chr22	37862968	37863038	18364526	0	+	0.428571	(0.42,0.455]	chr22	1562174	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1:ENST00000464790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	167	2	4.60954	5.820774999999999	7.03201	7.99764e-11	1.22439e-11	1.11788e-8	2.27934e-9
chr10	42807011	42807111	11018411	0	+	0.39	(0.36,0.39]	chr10	838211	44	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.63354	5.8207450000000005	6.00795	1.45096e-6	2.19402e-7	6.01084e-5	1.09601e-5
chr19	44908796	44908885	17349676	0	+	0.764045	(0.59,1]	chr19	1439242	4	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000446996.5:ENST00000252486.9:ENST00000434152.5:ENST00000425718.1	protein_coding	protein_coding	protein_coding	protein_coding	5	559	2	4.615	5.818325	7.02165	2.37354e-9	1e-12	2.23686e-7	2.46312e-10
chr8	90537042	90537142	9476863	0	+	0.38	(0.36,0.39]	chr8	720846	170	INTRON	INTRON	LINC00534	ENSG00000253394.6	ENST00000655523.1:ENST00000658299.1:ENST00000662692.1:ENST00000667296.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000671657.1	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	4.24194	5.816405	7.39087	0.00276729	1e-12	0.0247437	2.25522e-10
chr6	112356422	112356519	7901688	0	-	0.536082	(0.53,0.59]	chr6	605281	7	EXON_PSEUDO	EXON_PSEUDO	RPSAP45	ENSG00000219773.1	ENST00000401872.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	59	2	5.79528	5.816295	5.8373100000000004	2.61912e-6	2.06883e-6	9.89086e-5	7.35008e-5
chr3	141907166	141907220	3789995	0	+	0.407407	(0.39,0.42]	chr3	323469	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	145	2	3.82233	5.81607	7.80981	7.89457e-7	1e-12	3.62648e-5	2.25522e-10
chr11	44197829	44197923	11927116	0	+	0.585106	(0.53,0.59]	chr11	911593	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000534048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	132	2	3.99191	5.81602	7.64013	5.86351e-5	1e-12	0.00129243	2.25522e-10
chr15	43769517	43769581	14896531	0	+	0.296875	(0.29,0.33]	chr15	1171308	1	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	92	2	5.69624	5.81593	5.93562	7.29486e-7	2.52631e-12	3.41021e-5	5.14527e-10
chr14	22771558	22771656	14174788	0	+	0.479592	(0.455,0.49]	chr14	1110340	1	UTR3	UTR3:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.54484	5.81482	6.0848	4.89523e-6	1.71103e-7	1.67428e-4	8.87341e-6
chr1	161595552	161595590	501329	0	+	0.5	(0.49,0.53]	chr1	54324	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000473530.6:ENST00000611236.1:ENST00000467903.5:ENST00000507374.5	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	1	100	2	4.58452	5.814485	7.04445	9.98532e-7	5.5223e-11	4.42534e-5	8.02095e-9
chr11	954494	954593	11759755	0	+	0.323232	(0.29,0.33]	chr11	898696	61	INTRON	INTRON	AP2A2	ENSG00000183020.14	ENST00000529818.5:ENST00000332231.9:ENST00000448903.7:ENST00000529858.5:ENST00000525796.5:ENST00000534328.5:ENST00000528815.5:ENST00000528195.5:ENST00000531548.5:ENST00000534485.5:ENST00000527024.1:ENST00000526753.5:ENST00000530801.5:ENST00000524559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	5.77715	5.8126750000000005	5.8482	4.72847e-7	3.88822e-7	2.10391e-5	1.99593e-5
chrX	153704026	153704094	19273648	0	-	0.573529	(0.53,0.59]	chrX	1637365	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	187	2	5.7988	5.811895	5.82499	4.40271e-11	3.26895e-11	6.56058e-9	5.53768e-9
chr3	61742547	61742640	4232426	0	-	0.462366	(0.455,0.49]	chr3	356045	2	EXON_PSEUDO	EXON_PSEUDO	RPL10AP6	ENSG00000226360.5	ENST00000472730.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	125	2	4.15342	5.81176	7.4701	5.52725e-7	1e-12	2.69113e-5	2.25522e-10
chr3	182944895	182944994	4615674	0	-	0.393939	(0.39,0.42]	chr3	380839	70	UTR3	UTR3:EXON_MRNA	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.80735	5.811629999999999	5.81591	1.11558e-6	4.99312e-7	4.4003e-5	2.4714e-5
chr7	117131884	117131960	8480026	0	+	0.460526	(0.455,0.49]	chr7	647646	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000465133.5:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.67339	5.811405000000001	5.94942	2.05982e-6	4.68666e-7	8.10246e-5	2.08717e-5
chr12	7922888	7922956	13193193	0	-	0.647059	(0.59,1]	chr12	1033489	2	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	147	2	4.82847	5.811305	6.79414	1.01132e-6	1.89941e-7	4.03099e-5	1.08933e-5
chr19	1495537	1495607	17193646	0	+	0.557143	(0.53,0.59]	chr19	1412285	2	CDS	CDS:EXON_MRNA	REEP6	ENSG00000115255.12	ENST00000591735.2:ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.33948	5.81033	6.28118	4.08763e-5	8.87941e-8	9.64741e-4	5.04867e-6
chr17	48899180	48899231	16255812	0	+	0.54902	(0.53,0.59]	chr17	1317524	2	EXON_PSEUDO	EXON_PSEUDO	RP11-501C14.9	ENSG00000270781.1	ENST00000603088.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	88	2	4.43863	5.810175	7.18172	0.00254763	4.21413e-11	0.0233955	6.31002e-9
chr7	132921558	132921658	9076865	0	-	0.29	[0,0.29]	chr7	693040	342	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	5.09219	5.8101	6.52801	1.24853e-8	4.00352e-10	9.37759e-7	5.15235e-8
chr2	64989999	64990084	1853044	0	+	0.635294	(0.59,1]	chr2	175806	4	CDS	CDS:EXON_MRNA:INTRON	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.41325	5.809665	6.20608	3.01546e-4	4.1102e-6	0.00472028	1.31763e-4
chr19	18285342	18285418	17499057	0	-	0.381579	(0.36,0.39]	chr19	1468051	1	EXON_PSEUDO	EXON_PSEUDO	RPL39P38	ENSG00000241464.3	ENST00000467018.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	51	2	5.39105	5.809095	6.22714	7.73826e-6	3.88985e-8	2.43421e-4	2.48416e-6
chr11	2919306	2919356	11769379	0	+	0.5	(0.49,0.53]	chr11	900399	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000467719.5:ENST00000463571.5:ENST00000498209.6:ENST00000441077.5:ENST00000449603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	5.65129	5.808915000000001	5.96654	3.38975e-6	4.9393e-7	1.23071e-4	2.18407e-5
chr11	119048475	119048563	12626462	0	-	0.5	(0.49,0.53]	chr11	979768	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000531682.1:ENST00000543287.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	160	2	5.69731	5.80833	5.91935	5.27035e-7	1e-12	2.57927e-5	2.25522e-10
chr19	12643274	12643366	17469623	0	-	0.576087	(0.53,0.59]	chr19	1462695	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P16	ENSG00000178464.6	ENST00000325000.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	169	2	4.7852	5.80795	6.8307	9.38801e-10	1.95634e-10	1.08218e-7	2.46491e-8
chr6	42664161	42664214	7152213	0	+	0.358491	(0.33,0.36]	chr6	552004	1	EXON_SMALL	EXON_SMALL:INTRON	UBR2:RNU6-890P	ENSG00000024048.11:ENSG00000206848.1	ENST00000372899.6:ENST00000372901.2:ENST00000384121.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	0	70	2	4.52266	5.807375	7.09209	8.34989e-4	8.79241e-12	0.0102956	1.55082e-9
chr19	35169792	35169881	17303900	0	+	0.550562	(0.53,0.59]	chr19	1430638	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FXYD5	ENSG00000089327.15	ENST00000392219.7:ENST00000590686.5:ENST00000541435.6:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	116	2	5.63567	5.807105	5.97854	7.61837e-7	2.06825e-10	3.51585e-5	2.59186e-8
chr11	57417817	57417887	12394539	0	-	0.485714	(0.455,0.49]	chr11	958666	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	524	2	5.2754	5.8071	6.3388	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	125612669	125612747	12194457	0	+	0.410256	(0.39,0.42]	chr11	940774	2	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	267	2	4.98361	5.8068	6.62999	3.95245e-10	1e-12	5.09605e-8	2.25522e-10
chr2	135846314	135846392	2897966	0	-	0.487179	(0.455,0.49]	chr2	258494	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.32759	5.806565	6.28554	1.92345e-5	3.54381e-8	5.18397e-4	2.29553e-6
chr19	40374550	40374620	17328699	0	+	0.557143	(0.53,0.59]	chr19	1435573	2	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000475983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	155	2	3.85383	5.805485	7.75714	5.99548e-6	1e-12	1.97492e-4	2.25522e-10
chr7	101212841	101212892	8953707	0	-	0.705882	(0.59,1]	chr7	684695	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000460475.1:ENST00000478264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	393	2	5.43924	5.80459	6.16994	3.73166e-10	6.22732e-11	4.84694e-8	8.93706e-9
chr1	173485360	173485433	548592	0	+	0.410959	(0.39,0.42]	chr1	58291	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	538	2	4.728	5.804525	6.88105	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	33058086	33058175	4111572	0	-	0.505618	(0.49,0.53]	chr3	343511	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.08061	5.804485	6.52836	1.00361e-4	5.94027e-9	0.00196575	4.95921e-7
chr3	72884411	72884500	3554894	0	+	0.404494	(0.39,0.42]	chr3	308938	3	EXON_PSEUDO	EXON_PSEUDO	LAPTM4BP2	ENSG00000271266.1	ENST00000604542.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	5.00391	5.80429	6.60467	9.12714e-5	2.09314e-9	0.00182992	2.01229e-7
chr9	8713752	8713841	10177841	0	+	0.595506	(0.59,1]	chr9	766509	6	EXON_PSEUDO	EXON_PSEUDO	RP11-134K1.2	ENSG00000212695.5	ENST00000391389.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	75	2	5.4627	5.8041149999999995	6.14553	2.43542e-4	5.79142e-6	0.00399705	1.75119e-4
chr16	81711369	81711467	15772103	0	+	0.336735	(0.33,0.36]	chr16	1255597	17	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	3	161	2	5.53708	5.80397	6.07086	2.0019e-10	1e-12	2.51594e-8	2.46312e-10
chr10	118932173	118932273	11716185	0	-	0.28	[0,0.29]	chr10	893737	597	INTRON	INTRON	RP11-498J9.2	ENSG00000229272.2	ENST00000663084.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	5.32631	5.803145000000001	6.27998	1.03299e-5	1.22353e-8	3.0965e-4	9.19778e-7
chr2	167971014	167971114	2999220	0	-	0.46	(0.455,0.49]	chr2	265490	59	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5:ENST00000461000.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.24724	5.802925	6.35861	3.09759e-5	1.95116e-8	7.62166e-4	1.37715e-6
chr14	22875724	22875816	14175060	0	+	0.565217	(0.53,0.59]	chr14	1110443	5	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000553002.1:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	4.95825	5.8027999999999995	6.64735	2.87508e-4	4.80744e-9	0.00457439	4.10382e-7
chr11	119025259	119025329	12626335	0	-	0.514286	(0.49,0.53]	chr11	979709	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	96	2	4.74284	5.80119	6.85954	2.96405e-7	3.1478e-10	1.59277e-5	3.76745e-8
chr11	44171642	44171742	11926849	0	+	0.48	(0.455,0.49]	chr11	911569	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000525559.1:ENST00000534048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.07172	5.79915	6.52658	8.3067e-5	4.72215e-9	0.00171126	4.04884e-7
chr1	20656100	20656187	882293	0	-	0.54023	(0.53,0.59]	chr1	91146	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1	protein_coding	protein_coding	protein_coding	protein_coding	5	339	2	5.42255	5.79904	6.17553	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	74469984	74470073	16031181	0	-	0.393258	(0.39,0.42]	chr16	1287299	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.29502	5.7982700000000005	6.30152	1.68146e-5	2.78542e-8	4.64895e-4	1.87494e-6
chr11	2395919	2395970	11764970	0	+	0.470588	(0.455,0.49]	chr11	900174	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	198	2	5.38735	5.7976600000000005	6.20797	3.84959e-12	1e-12	8.06494e-10	2.25522e-10
chr1	167546192	167546285	1347879	0	-	0.397849	(0.39,0.42]	chr1	137999	2	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	4	167	2	4.83224	5.797615	6.76299	1.05046e-10	6.52256e-12	1.56759e-8	1.19079e-9
chr16	88646754	88646838	16073969	0	-	0.559524	(0.53,0.59]	chr16	1291442	1	CDS	CDS:EXON_MRNA	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000565588.5:ENST00000566229.1:ENST00000567174.5:ENST00000569359.5:ENST00000563526.5:ENST00000568278.1:ENST00000562209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	506	2	5.11898	5.797454999999999	6.47593	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	57738353	57738430	11952411	0	+	0.415584	(0.39,0.42]	chr11	914728	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.53713	5.79707	6.05701	3.48373e-6	1.91744e-7	1.26023e-4	9.81202e-6
chr3	128625533	128625593	4441359	0	-	0.45	(0.42,0.455]	chr3	368997	1	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	3	138	2	4.23066	5.79612	7.36158	2.42233e-8	1e-12	1.66425e-6	2.46312e-10
chrX	100156674	100156773	19147542	0	-	0.484848	(0.455,0.49]	chrX	1628114	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP8	ENSG00000230592.2	ENST00000429844.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	121	2	3.89235	5.795365	7.69838	9.60445e-5	1e-12	0.00190731	2.25522e-10
chr1	228687578	228687661	746529	0	+	0.433735	(0.42,0.455]	chr1	75817	3	EXON_PSEUDO	EXON_PSEUDO	FTH1P2	ENSG00000234975.6	ENST00000466086.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	59	2	5.11218	5.795185	6.47819	6.01815e-5	8.14533e-9	0.00130886	6.49842e-7
chr6	44232342	44232428	7161511	0	+	0.453488	(0.42,0.455]	chr6	553808	1	CDS	CDS:UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000472176.2:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	466	2	5.55243	5.7946550000000006	6.03688	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	3518587	3518680	2492567	0	-	0.752688	(0.59,1]	chr2	224987	10	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11	protein_coding	protein_coding	protein_coding	protein_coding	2	219	2	5.16753	5.79449	6.42145	1.83275e-6	1.89166e-9	7.37353e-5	1.84451e-7
chrX	52656563	52656650	18701835	0	+	0.563218	(0.53,0.59]	chrX	1595745	3	EXON_PSEUDO	EXON_PSEUDO	RP11-552J9.9	ENSG00000228354.1	ENST00000450868.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	61	2	5.33948	5.79275	6.24602	4.08763e-5	1.15746e-7	9.64741e-4	6.3314e-6
chr16	88643452	88643516	16073932	0	-	0.78125	(0.59,1]	chr16	1291430	1	CDS	CDS:EXON_MRNA	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000565588.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	774	2	5.28428	5.79174	6.2992	1.06079e-10	1e-12	1.58039e-8	2.25522e-10
chr11	130135562	130135638	12207043	0	+	0.565789	(0.53,0.59]	chr11	942064	1	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	190	2	5.4428	5.79167	6.14054	1.17076e-9	1.48914e-12	1.307e-7	3.20796e-10
chr11	17077641	17077667	12295059	0	-	0.615385	(0.59,1]	chr11	950312	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1:ENST00000527571.1:ENST00000534329.1:ENST00000528074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	669	2	5.14461	5.791335	6.43806	1.33697e-11	3.5919e-12	2.46694e-9	7.03622e-10
chr3	196052041	196052112	4663161	0	-	0.43662	(0.42,0.455]	chr3	385552	1	CDS	CDS:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	5	343	2	4.88013	5.791125	6.70212	2.77285e-11	1e-12	4.77472e-9	2.25522e-10
chr16	10744663	10744762	15538575	0	+	0.444444	(0.42,0.455]	chr16	1230684	2	INTRON	INTRON	NUBP1	ENSG00000103274.11	ENST00000574334.5:ENST00000571790.5:ENST00000283027.10:ENST00000574137.1:ENST00000433392.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.20268	5.7900849999999995	6.37749	3.59669e-5	1.88677e-8	8.71318e-4	1.34393e-6
chr4	13337624	13337712	4721284	0	+	0.420455	(0.42,0.455]	chr4	391941	3	EXON_PSEUDO	EXON_PSEUDO:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	57	2	5.20268	5.7900849999999995	6.37749	3.59669e-5	1.88677e-8	8.71318e-4	1.34393e-6
chr1	74744565	74744665	297819	0	+	0.53	(0.49,0.53]	chr1	31048	54	INTRON	INTRON	TYW3	ENSG00000162623.16	ENST00000370867.8:ENST00000457880.6:ENST00000479111.5:ENST00000483990.1	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	5.76456	5.789625	5.81469	1.57714e-6	2.17082e-11	6.4504e-5	3.48211e-9
chr2	74461469	74461565	2742882	0	-	0.5625	(0.53,0.59]	chr2	244411	2	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	119	2	5.73575	5.789535000000001	5.84332	1.90853e-6	8.05113e-11	7.59317e-5	1.12266e-8
chr20	17678499	17678599	17916510	0	-	0.41	(0.39,0.42]	chr20	1516292	176	INTRON	INTRON	RRBP1	ENSG00000125844.16	ENST00000360807.8:ENST00000377807.6:ENST00000377813.6:ENST00000455029.3:ENST00000398782.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.00391	5.78894	6.57397	9.12714e-5	2.74698e-9	0.00182992	2.54234e-7
chrX	154434218	154434294	18917895	0	+	0.578947	(0.53,0.59]	chrX	1611914	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	4.6384	5.7887699999999995	6.93914	8.42977e-7	3.87124e-10	3.83773e-5	4.52619e-8
chr17	28326533	28326583	16175259	0	+	0.48	(0.455,0.49]	chr17	1304978	1	CDS	CDS:UTR5:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.32759	5.787575	6.24756	1.92345e-5	4.80845e-8	5.18397e-4	2.97443e-6
chr14	102946784	102946884	14794101	0	-	0.69	(0.59,1]	chr14	1159353	1	SS3_PROX	SS3_PROX:INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7:ENST00000559043.1	protein_coding	protein_coding	protein_coding	protein_coding	5	656	2	3.91953	5.787465	7.6554	5.25026e-7	1e-12	2.57927e-5	2.25522e-10
chr14	49586346	49586412	14613989	0	-	0.5	(0.49,0.53]	chr14	1144059	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	1771	2	5.35499	5.78634	6.21769	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	42831028	42831115	162120	0	+	0.517241	(0.49,0.53]	chr1	20383	4	CDS	CDS:EXON_MRNA:INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	5.65129	5.785645000000001	5.92	3.38975e-6	6.89283e-7	1.23071e-4	2.91313e-5
chr5	181243780	181243800	7009028	0	-	0.5	(0.49,0.53]	chr5	537355	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000507000.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1:ENST00000503170.1:ENST00000514318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	313	2	5.41875	5.785605	6.15246	8.37801e-10	1e-12	9.80358e-8	2.25522e-10
chr12	56117789	56117878	12898121	0	+	0.359551	(0.33,0.36]	chr12	1004183	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPL41	ENSG00000229117.9	ENST00000501597.3:ENST00000546591.6:ENST00000358888.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	5.62951	5.78555	5.94159	1.1372e-7	7.83955e-11	7.00677e-6	1.10019e-8
chr2	8877121	8877213	2505927	0	-	0.456522	(0.455,0.49]	chr2	226114	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000471753.5:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.07172	5.78312	6.49452	8.3067e-5	6.22217e-9	0.00171126	5.13192e-7
chr8	80682729	80682829	9911514	0	-	0.47	(0.455,0.49]	chr8	748635	95	INTRON	INTRON	ZNF704	ENSG00000164684.13	ENST00000327835.7:ENST00000520336.1:ENST00000519936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.07172	5.78312	6.49452	8.3067e-5	6.22217e-9	0.00171126	5.13192e-7
chr1	147179324	147179423	453654	0	+	0.474747	(0.455,0.49]	chr1	45094	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-337C18.10:PDIA3P1	ENSG00000237188.5:ENSG00000180867.11	ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	2	144	2	5.56371	5.782830000000001	6.00195	1.86149e-7	1e-12	1.07114e-5	2.25522e-10
chr14	52640506	52640605	14630035	0	-	0.444444	(0.42,0.455]	chr14	1145962	7	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.58564	5.78268	5.97972	3.24669e-6	4.13864e-7	1.18495e-4	1.88179e-5
chr15	72350517	72350591	15369501	0	-	0.594595	(0.59,1]	chr15	1214443	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	5.72839	5.78238	5.83637	7.24021e-5	3.04631e-5	0.0015254	6.83179e-4
chr1	161599703	161599803	501374	0	+	0.48	(0.455,0.49]	chr1	54332	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000611236.1:ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	1	107	2	5.73362	5.78186	5.8301	1.35346e-6	1.56882e-11	5.67444e-5	2.60884e-9
chr2	84777740	84777837	2769137	0	-	0.43299	(0.42,0.455]	chr2	245559	6	EXON_PSEUDO	EXON_PSEUDO	LDHAP7	ENSG00000235847.2	ENST00000398295.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	229	2	5.04899	5.780725	6.51246	7.88847e-12	1e-12	1.40847e-9	2.46312e-10
chr3	196058283	196058365	4663229	0	-	0.414634	(0.39,0.42]	chr3	385571	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5:ENST00000482479.1:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	400	2	4.85023	5.780645	6.71106	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	30489905	30489995	7111195	0	+	0.633333	(0.59,1]	chr6	544744	3	CDS	CDS:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5:ENST00000484194.1:ENST00000493699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	73	2	5.51052	5.780085	6.04965	0.00019737500000000001	9.85057e-6	0.00336487	2.72926e-4
chr11	1759515	1759577	12230491	0	-	0.612903	(0.59,1]	chr11	944409	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000677300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	145	2	4.99478	5.77951	6.56424	7.86684e-7	3.43637e-7	3.61693e-5	1.60752e-5
chrX	66197752	66197823	18717596	0	+	0.535211	(0.53,0.59]	chrX	1596996	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.5853	5.77891	5.97252	9.83355e-6	8.30115e-7	2.98194e-4	3.4056e-5
chr18	12986957	12987057	16764016	0	+	0.5	(0.49,0.53]	chr18	1382773	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.59114	5.778840000000001	5.96654	5.02516e-6	4.9393e-7	1.7067e-4	2.18407e-5
chr6	149789953	149790005	7481914	0	+	0.403846	(0.39,0.42]	chr6	571780	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	112	2	5.53713	5.77843	6.01973	3.48373e-6	1.96798e-12	1.26023e-4	4.12864e-10
chrX	48527219	48527285	18691844	0	+	0.590909	(0.59,1]	chrX	1594142	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1:ENST00000466461.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	267	2	3.70012	5.777865	7.85561	2.23493e-6	5.10195e-11	8.6801e-5	7.4789e-9
chr14	88223377	88223477	14744497	0	-	0.4	(0.39,0.42]	chr14	1154751	306	INTRON	INTRON	KCNK10	ENSG00000100433.16	ENST00000340700.9:ENST00000319231.10:ENST00000312350.9	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.10761	5.775885000000001	6.44416	5.12039e-5	8.46338e-9	0.00114668	6.69855e-7
chr1	91643102	91643200	350541	0	+	0.367347	(0.36,0.39]	chr1	34388	7	EXON_PSEUDO	EXON_PSEUDO	HSP90B3P	ENSG00000203914.4	ENST00000415545.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	178	2	5.39105	5.775435	6.15982	7.73826e-6	1e-12	2.43421e-4	2.25522e-10
chr1	180189612	180189674	582836	0	+	0.419355	(0.39,0.42]	chr1	60562	2	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.53713	5.774520000000001	6.01191	3.48373e-6	2.69432e-7	1.26023e-4	1.30302e-5
chr17	7587215	7587271	16105794	0	+	0.553571	(0.53,0.59]	chr17	1297030	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000579445.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000581380.1:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	103	2	5.09772	5.774475	6.45123	2.38604e-8	2.24134e-8	1.68827e-6	1.64029e-6
chr3	33068896	33068970	4111687	0	-	0.486486	(0.455,0.49]	chr3	343535	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	97	2	5.5444	5.773175	6.00195	1.86149e-7	2.70062e-10	1.07114e-5	3.28177e-8
chrX	40599591	40599666	18667568	0	+	0.44	(0.42,0.455]	chrX	1591868	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637930.1:ENST00000637140.1:ENST00000637793.1:ENST00000638046.1:ENST00000637019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	5.71378	5.773070000000001	5.83236	5.6476e-7	5.53809e-11	2.73442e-5	8.03719e-9
chr11	119028193	119028255	12626372	0	-	0.677419	(0.59,1]	chr11	979725	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6:ENST00000525787.1:ENST00000534384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	73	2	5.4627	5.7725100000000005	6.08232	2.43542e-4	8.23309e-6	0.00399705	2.34786e-4
chr16	28843795	28843855	15907764	0	-	0.55	(0.53,0.59]	chr16	1273887	2	CDS	CDS:EXON_MRNA:PRIMIRNA	TUFM:MIR4721	ENSG00000178952.11:ENSG00000283845.1	ENST00000313511.8:ENST00000569217.1:ENST00000577590.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	121	2	5.74558	5.77219	5.7988	3.61407e-6	4.40271e-11	1.29307e-4	6.56058e-9
chr14	58257751	58257846	14311329	0	+	0.410526	(0.39,0.42]	chr14	1118497	1	CDS	CDS:UTR3:EXON_MRNA	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000556321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	5.00144	5.772015	6.54259	2.79286e-8	3.6184e-9	2.04912e-6	3.21383e-7
chrX	23682460	23682526	18616031	0	+	0.454545	(0.42,0.455]	chrX	1589680	2	CDS	CDS:EXON_MRNA	PRDX4	ENSG00000123131.13	ENST00000379341.9:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.91213	5.77197	6.63181	1.75074e-4	2.16358e-9	0.00306313	2.06464e-7
chr5	132213984	132214053	6833675	0	-	0.550725	(0.53,0.59]	chr5	522728	2	CDS	CDS:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5:ENST00000395164.5:ENST00000453286.5:ENST00000418055.5	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	5.65284	5.771330000000001	5.88982	1.39814e-6	1.76142e-10	5.82056e-5	2.24198e-8
chr1	225418081	225418180	1528229	0	-	0.454545	(0.42,0.455]	chr1	152822	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000487054.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	86	2	4.93872	5.770545	6.60237	5.07972e-8	2.80087e-9	3.4372e-6	2.57422e-7
chr1	28095741	28095838	912442	0	-	0.42268	(0.42,0.455]	chr1	95414	1	EXON_PSEUDO	EXON_PSEUDO	SPCS2P4	ENSG00000228589.3	ENST00000436160.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	194	2	5.48343	5.770075	6.05672	2.33225e-12	1e-12	4.78916e-10	2.46312e-10
chr16	67228820	67228920	15708879	0	+	0.58	(0.53,0.59]	chr16	1249926	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM208	ENSG00000168701.19	ENST00000567193.5:ENST00000563168.1:ENST00000563953.5:ENST00000304800.14:ENST00000561586.5:ENST00000562235.5:ENST00000565201.1:ENST00000563426.5:ENST00000563271.5:ENST00000564649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.399	5.77006	6.14112	3.02387e-5	2.39342e-7	6.78876e-4	1.32863e-5
chr7	112206694	112206716	8459123	0	+	0.5	(0.49,0.53]	chr7	646467	1	UTR5	UTR5:EXON_MRNA	ZNF277	ENSG00000198839.10	ENST00000361822.8:ENST00000361946.8:ENST00000457808.5:ENST00000421043.5:ENST00000425229.5:ENST00000450657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.52837	5.769995	6.01162	7.50805e-6	3.55916e-7	2.3779e-4	1.64926e-5
chr1	110899376	110899467	405637	0	+	0.428571	(0.42,0.455]	chr1	39842	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	4.82151	5.769105	6.7167	1.37132e-7	1.01691e-9	8.22607e-6	1.0635e-7
chr1	91643200	91643298	350542	0	+	0.367347	(0.36,0.39]	chr1	34388	8	EXON_PSEUDO	EXON_PSEUDO	HSP90B3P	ENSG00000203914.4	ENST00000415545.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	304	2	5.39105	5.76892	6.14679	7.73826e-6	1e-12	2.43421e-4	2.25522e-10
chr6	27478834	27478934	7104710	0	+	0.52	(0.49,0.53]	chr6	543403	32	INTRON	INTRON	XXbac-BPGBPG34I8.5	ENSG00000286652.1	ENST00000663193.1	lncRNA	lncRNA	lncRNA	lncRNA	127	6785	2	5.63422	5.768515	5.90281	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	47142663	47142744	19059799	0	-	0.518519	(0.49,0.53]	chrX	1619805	2	CDS	CDS:EXON_MRNA	NDUFB11	ENSG00000147123.11	ENST00000377811.4:ENST00000276062.8	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	5.39509	5.767035	6.13898	1.37435e-7	1.04742e-9	7.34618e-6	1.19096e-7
chr2	20037537	20037614	2539773	0	-	0.350649	(0.33,0.36]	chr2	228425	1	CDS	CDS:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	4.51269	5.7668800000000005	7.02107	1.90304e-6	1.83035e-11	7.59317e-5	2.98958e-9
chr8	6730758	6730826	9180497	0	+	0.470588	(0.455,0.49]	chr8	701025	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.97525	5.7666	6.55795	1.38474e-4	3.59716e-9	0.00254294	3.19904e-7
chr9	34319078	34319174	10238889	0	+	0.489583	(0.455,0.49]	chr9	769897	8	EXON_PSEUDO	EXON_PSEUDO	SERPINH1P1	ENSG00000229207.1	ENST00000419794.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	4.97525	5.7666	6.55795	1.38474e-4	3.59716e-9	0.00254294	3.19904e-7
chr6	7798370	7798470	7033381	0	+	0.53	(0.49,0.53]	chr6	539040	704	INTRON	INTRON	BMP6	ENSG00000153162.9	ENST00000283147.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.39399	5.766484999999999	6.13898	1.71804e-5	1.37435e-7	4.72485e-4	7.34618e-6
chrX	40591293	40591365	18667475	0	+	0.5	(0.49,0.53]	chrX	1591845	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP6AP2	ENSG00000182220.15	ENST00000436783.6:ENST00000636409.1:ENST00000487051.2:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000637954.1:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.39399	5.766484999999999	6.13898	1.71804e-5	1.37435e-7	4.72485e-4	7.34618e-6
chr19	10283480	10283556	17224622	0	+	0.631579	(0.59,1]	chr19	1418496	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000588645.1:ENST00000585443.1:ENST00000592686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	81	2	5.03834	5.766475	6.49461	0.00108238	1.19255e-6	0.0118355	5.10538e-5
chr12	46362493	46362565	13314323	0	-	0.333333	(0.33,0.36]	chr12	1043587	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000552703.1:ENST00000612232.1:ENST00000546520.1:ENST00000548785.1:ENST00000548111.5:ENST00000548236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	5.40955	5.76637	6.12319	1.14206e-5	2.40967e-8	3.08108e-4	1.80206e-6
chr21	27420655	27420747	18195990	0	-	0.565217	(0.53,0.59]	chr21	1544319	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	AP001604.3:RPL10P1	ENSG00000231236.2:ENSG00000217026.3	ENST00000420186.2:ENST00000447844.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	143	2	3.69065	5.766325	7.842	3.04331e-4	1e-12	0.00472028	2.25522e-10
chr7	98881729	98881750	8419055	0	+	0.52381	(0.49,0.53]	chr7	641080	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	TRRAP:MIR3609	ENSG00000196367.14:ENSG00000266019.1	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000582661.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	0	53	2	5.66172	5.76565	5.86958	3.99372e-6	7.54524e-7	1.28691e-4	3.49213e-5
chrX	77870807	77870866	19129406	0	-	0.38983	(0.36,0.39]	chrX	1626901	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1:ENST00000373336.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	5.47649	5.76551	6.05453	4.3709e-6	1.53427e-7	1.52262e-4	8.08703e-6
chr4	82827456	82827544	5496508	0	-	0.568182	(0.53,0.59]	chr4	440177	2	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	166	2	4.79831	5.7651900000000005	6.73207	2.20251e-9	1.72328e-10	2.2752e-7	2.19584e-8
chr2	135169066	135169161	2080906	0	+	0.557895	(0.53,0.59]	chr2	195211	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2:ENST00000497080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	106	2	5.35013	5.764595	6.17906	1.81157e-7	2.75928e-9	1.05195e-5	2.54269e-7
chr2	20102245	20102345	2540302	0	-	0.31	(0.29,0.33]	chr2	228443	374	INTRON	INTRON	AC098828.2	ENSG00000234378.1	ENST00000430429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	5.51937	5.76419	6.00901	2.69449e-6	1.36977e-7	1.01443e-4	7.34618e-6
chr19	44907855	44907952	17349666	0	+	0.608247	(0.59,1]	chr19	1439238	2	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000446996.5:ENST00000252486.9:ENST00000434152.5:ENST00000425718.1	protein_coding	protein_coding	protein_coding	protein_coding	7	345	2	3.29264	5.764115	8.23559	3.67352e-6	2.46791e-12	1.30871e-4	5.03515e-10
chr7	135444832	135444925	8552387	0	+	0.462366	(0.455,0.49]	chr7	652676	5	EXON_PSEUDO	EXON_PSEUDO	SDHDP2	ENSG00000227073.1	ENST00000436937.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	51	2	5.57318	5.7626550000000005	5.95213	6.11867e-6	2.72823e-7	1.83393e-4	1.4763e-5
chr1	53050608	53050704	197912	0	+	0.447917	(0.42,0.455]	chr1	25185	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000430330.6:ENST00000408941.7:ENST00000533119.1:ENST00000484100.5:ENST00000435345.6:ENST00000488965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.11218	5.76201	6.41184	6.01815e-5	1.42035e-8	0.00130886	1.0503e-6
chrX	71669458	71669558	18733559	0	+	0.51	(0.49,0.53]	chrX	1598925	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-402P6.15	ENSG00000283599.2	ENST00000636797.2:ENST00000636096.2	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.99034	5.7593499999999995	6.52836	1.6002e-4	5.94027e-9	0.00286408	4.95921e-7
chr11	119101017	119101077	12626666	0	-	0.516667	(0.49,0.53]	chr11	979875	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000460183.1:ENST00000472016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.46274	5.759040000000001	6.05534	1.13094e-5	2.57847e-7	3.3464e-4	1.25763e-5
chr9	133364839	133364932	10880466	0	-	0.526882	(0.49,0.53]	chr9	825853	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5:ENST00000371991.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	122	2	4.25184	5.758559999999999	7.26528	2.59344e-7	6.32572e-12	1.42291e-5	1.15667e-9
chrX	152869016	152869116	18913011	0	+	0.57	(0.53,0.59]	chrX	1610619	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NSDHL	ENSG00000147383.11	ENST00000440023.5:ENST00000370274.8	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.27087	5.758445	6.24602	5.9416e-5	1.15746e-7	0.00130151	6.3314e-6
chr17	59680984	59681057	16295448	0	+	0.39726	(0.39,0.42]	chr17	1321715	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	4.30145	5.7581500000000005	7.21485	7.39643e-6	6.15075e-12	2.35326e-4	1.12704e-9
chr17	83026874	83026974	16715078	0	-	0.64	(0.59,1]	chr17	1378983	120	INTRON	INTRON	B3GNTL1	ENSG00000175711.8	ENST00000320865.3:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.22549	5.758055	6.29062	5.13843e-4	3.87694e-6	0.00665221	1.37159e-4
chr2	239915188	239915288	3244900	0	-	0.39	(0.36,0.39]	chr2	285963	18	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.71926	5.75741	6.79556	5.29682e-4	4.70566e-11	0.006804	7.63702e-9
chr1	37544850	37544939	142346	0	+	0.41573	(0.39,0.42]	chr1	17756	2	EXON_PSEUDO	EXON_PSEUDO	FTH1P1	ENSG00000232273.1	ENST00000437933.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	57	2	5.00391	5.757215	6.51052	9.12714e-5	4.78431e-9	0.00182992	4.08907e-7
chr5	43232394	43232492	6560124	0	-	0.44898	(0.42,0.455]	chr5	508331	7	EXON_PSEUDO	EXON_PSEUDO	TUBAP14	ENSG00000247763.2	ENST00000501221.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	52	2	5.44441	5.75647	6.06853	8.23077e-6	2.14495e-7	2.56136e-4	1.07721e-5
chr2	218277025	218277099	3186663	0	-	0.554054	(0.53,0.59]	chr2	279911	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	101	2	4.89254	5.75634	6.62014	1.22494e-7	6.02789e-9	7.48996e-6	5.00481e-7
chrX	101390935	101391035	18786332	0	+	0.54	(0.53,0.59]	chrX	1601403	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPL36A:RPL36A-HNRNPH2	ENSG00000241343.10:ENSG00000257529.5	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000409338.5:ENST00000553110.8:ENST00000465340.5:ENST00000491851.5:ENST00000409170.3:ENST00000372849.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	765	2	5.08962	5.75628	6.42294	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	46902911	46903011	18402554	0	+	0.57	(0.53,0.59]	chr22	1567399	77	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	110	2	4.32972	5.75572	7.18172	7.20871e-6	4.21413e-11	2.30406e-4	6.31002e-9
chr4	175458020	175458119	5806735	0	-	0.373737	(0.36,0.39]	chr4	456885	4	EXON_LNCRNA	EXON_LNCRNA	RP11-598D14.1	ENSG00000249945.2	ENST00000664617.1	lncRNA	lncRNA	lncRNA	lncRNA	0	90	2	4.0322	5.755545	7.47889	0.00588589	1e-12	0.0427941	2.25522e-10
chr6	69676449	69676541	7787756	0	-	0.445652	(0.42,0.455]	chr6	596295	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000651675.1:ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.20268	5.754455	6.30623	3.59669e-5	3.37116e-8	8.71318e-4	2.19621e-6
chr1	54865302	54865374	1030705	0	-	0.597222	(0.59,1]	chr1	107007	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	4.86977	5.754065	6.63836	0.00246014	3.02038e-7	0.0230058	1.44093e-5
chrX	120441729	120441811	19196178	0	-	0.390244	(0.39,0.42]	chrX	1631979	1	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	130	2	5.41997	5.753255	6.08654	5.44086e-8	3.87135e-12	3.65504e-6	7.52029e-10
chr4	112565151	112565233	5056865	0	+	0.451219	(0.42,0.455]	chr4	410931	3	EXON_PSEUDO	EXON_PSEUDO	H3P14	ENSG00000250966.2	ENST00000321285.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	50	2	5.73036	5.75244	5.77452	2.37045e-6	8.63204e-7	8.28831e-5	3.91474e-5
chr6	5811721	5811821	7028116	0	+	0.58	(0.53,0.59]	chr6	538550	403	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000648580.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	95	2	4.16383	5.751995	7.34016	0.00659193	9.3564e-12	0.0454205	1.63377e-9
chr4	47706547	47706635	4824051	0	+	0.511364	(0.49,0.53]	chr4	397622	3	EXON_PSEUDO	EXON_PSEUDO	RP11-100N21.1	ENSG00000242262.1	ENST00000487352.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	55	2	5.32179	5.750425	6.17906	2.63311e-5	1.01082e-7	6.73425e-4	5.6272e-6
chr22	41813263	41813354	18382999	0	+	0.549451	(0.53,0.59]	chr22	1564965	1	CDS	CDS:EXON_MRNA:INTRON	CCDC134	ENSG00000100147.14	ENST00000255784.6:ENST00000402061.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.52766	5.75009	5.97252	1.38993e-5	8.30115e-7	3.94563e-4	3.4056e-5
chr6	33201578	33201656	7121274	0	+	0.576923	(0.53,0.59]	chr6	547377	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	3	162	2	4.7178	5.750015	6.78223	1.43096e-9	3.73707e-10	1.55671e-7	4.38693e-8
chr1	153991575	153991625	479591	0	+	0.46	(0.455,0.49]	chr1	49572	1	CDS	CDS:UTR3:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000392558.4:ENST00000643794.1:ENST00000493224.5:ENST00000477151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	737	2	4.91863	5.749135000000001	6.57964	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	77856802	77856873	19129262	0	-	0.43662	(0.42,0.455]	chrX	1626886	2	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	5.71427	5.749035	5.7838	1.6512e-6	1.33053e-6	6.0825e-5	5.6008e-5
chr19	18388560	18388651	17258399	0	+	0.78022	(0.59,1]	chr19	1425388	4	CDS	CDS:EXON_MRNA	GDF15	ENSG00000130513.6	ENST00000252809.3	protein_coding	protein_coding	protein_coding	protein_coding	6	719	2	5.66987	5.748785	5.8277	6.26782e-11	1e-12	9.81393e-9	2.25522e-10
chr1	220144060	220144157	1511845	0	-	0.443299	(0.42,0.455]	chr1	151208	2	EXON_PSEUDO	EXON_PSEUDO	RPS15AP12	ENSG00000232134.1	ENST00000419498.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	87	2	4.92694	5.74874	6.57054	7.19661e-8	1.16955e-9	4.21199e-6	1.307e-7
chr1	25392067	25392141	904092	0	-	0.540541	(0.53,0.59]	chr1	94032	2	CDS	CDS:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	4.95825	5.746779999999999	6.53531	2.87508e-4	1.20872e-8	0.00457439	9.09817e-7
chr12	110343231	110343298	13085876	0	+	0.492537	(0.49,0.53]	chr12	1020538	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	167	2	5.18914	5.74639	6.30364	2.6977e-8	1.91014e-12	1.98827e-6	4.01696e-10
chrX	9568141	9568241	18567778	0	+	0.52	(0.49,0.53]	chrX	1586476	72	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.3469	5.746115	6.14533	2.75121e-5	9.58343e-8	6.30607e-4	6.01659e-6
chr11	78106920	78106946	12477780	0	-	0.346154	(0.33,0.36]	chr11	970713	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	5.61642	5.746005	5.87559	2.97369e-6	1.95052e-7	9.99199e-5	1.11133e-5
chr11	1491477	1491577	12229823	0	-	0.45	(0.42,0.455]	chr11	944267	48	INTRON	INTRON	MOB2	ENSG00000182208.14	ENST00000526462.5:ENST00000529380.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	0	60	2	4.75728	5.744235	6.73119	5.3817e-4	2.53502e-10	0.00686676	3.43829e-8
chr1	180183915	180183982	582776	0	+	0.567164	(0.53,0.59]	chr1	60550	1	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	4.86823	5.744185	6.62014	4.35895e-4	6.02789e-9	0.00623608	5.00481e-7
chrX	119786683	119786732	19192773	0	-	0.428571	(0.42,0.455]	chrX	1631594	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000477403.1:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	136	2	3.95417	5.74401	7.53385	2.4343e-7	1e-12	1.34798e-5	2.25522e-10
chr5	179723681	179723779	6414405	0	+	0.520408	(0.49,0.53]	chr5	499193	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	636	2	4.47985	5.743315	7.00678	1.61737e-12	1e-12	3.76198e-10	2.25522e-10
chr6	7301309	7301396	7587016	0	-	0.436782	(0.42,0.455]	chr6	578728	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5:ENST00000462112.1:ENST00000488834.5:ENST00000483409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	269	2	4.53937	5.743005	6.94664	1.05439e-10	1e-12	1.57197e-8	2.25522e-10
chr17	40388524	40388623	16538726	0	-	0.222222	[0,0.29]	chr17	1354547	1	UTR3	UTR3:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000577541.1	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	5.11908	5.74273	6.36638	2.0527e-9	5.807e-11	2.13842e-7	8.38906e-9
chr1	75252492	75252592	1104376	0	-	0.42	(0.39,0.42]	chr1	111424	8	INTRON	INTRON	SLC44A5	ENSG00000137968.16	ENST00000370859.7:ENST00000370855.5:ENST00000469525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	180	2	4.78838	5.7426449999999996	6.69691	1.7675e-7	1e-12	1.03066e-5	2.25522e-10
chr3	187074245	187074333	3960046	0	+	0.534091	(0.53,0.59]	chr3	334028	2	CDS	CDS:UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.73957	5.742575	5.74558	3.90343e-6	3.61407e-6	1.29307e-4	1.26306e-4
chr12	46365106	46365166	13314355	0	-	0.383333	(0.36,0.39]	chr12	1043607	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000612232.1:ENST00000548870.5:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	100	2	4.44434	5.742015	7.03969	4.89061e-8	3.32501e-12	3.02248e-6	7.11582e-10
chr2	27041122	27041217	1690682	0	+	0.463158	(0.455,0.49]	chr2	165370	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000460665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	115	2	4.22656	5.74192	7.25728	3.04208e-7	4.79283e-12	1.62675e-5	9.05722e-10
chr14	94726287	94726385	14470711	0	+	0.489796	(0.455,0.49]	chr14	1130296	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP4	ENSG00000239269.1	ENST00000488229.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	128	2	3.65079	5.74174	7.83269	3.61776e-4	1e-12	0.00544764	2.25522e-10
chr9	133363728	133363759	10880451	0	-	0.516129	(0.49,0.53]	chr9	825844	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.89405	5.74158	6.58911	2.57983e-4	3.52807e-9	0.00419998	3.14964e-7
chr20	56369868	56369964	18019684	0	-	0.510417	(0.49,0.53]	chr20	1527153	6	UTR3	UTR3:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.71721	5.7408850000000005	5.76456	2.77472e-6	1.57714e-6	9.47025e-5	6.4504e-5
chr2	25829212	25829312	2564523	0	-	0.48	(0.455,0.49]	chr2	230429	187	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.63332	5.740165	5.84701	4.15159e-6	5.98588e-7	1.32627e-4	2.85128e-5
chr15	77485115	77485212	15037371	0	+	0.484536	(0.455,0.49]	chr15	1182624	23	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	113	2	4.70058	5.73946	6.77834	5.41116e-9	2.14916e-10	4.56666e-7	2.96696e-8
chr8	38209109	38209206	9292315	0	+	0.546392	(0.53,0.59]	chr8	710687	2	CDS	CDS:EXON_MRNA	BAG4	ENSG00000156735.11	ENST00000432471.6:ENST00000287322.5:ENST00000521311.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.64073	5.73902	5.8373100000000004	7.00135e-6	2.06883e-6	2.25852e-4	7.35008e-5
chr3	75771421	75771521	4289016	0	-	0.45	(0.42,0.455]	chr3	358913	292	INTRON	INTRON	ZNF717	ENSG00000227124.11	ENST00000648506.1:ENST00000491507.1:ENST00000477374.5:ENST00000652011.2:ENST00000478296.5:ENST00000471541.2:ENST00000468296.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	4.16236	5.738854999999999	7.31535	1.83138e-5	3.22586e-12	4.99708e-4	6.37646e-10
chr16	29664010	29664101	15626149	0	+	0.494505	(0.49,0.53]	chr16	1239195	3	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	240	2	5.09715	5.7372	6.37725	5.09204e-12	1e-12	9.55632e-10	2.46312e-10
chr1	25290715	25290791	103646	0	+	0.5	(0.49,0.53]	chr1	12138	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	5.46274	5.73718	6.01162	1.13094e-5	3.55916e-7	3.3464e-4	1.64926e-5
chr7	102973618	102973718	8958985	0	-	0.68	(0.59,1]	chr7	685576	5	INTRON	INTRON	FBXL13	ENSG00000161040.16	ENST00000448002.6:ENST00000379305.7:ENST00000456695.5:ENST00000313221.8:ENST00000436908.5:ENST00000379308.7:ENST00000455112.6:ENST00000471074.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	1940	2	4.31177	5.73682	7.16187	4.2595e-10	1e-12	5.41837e-8	2.25522e-10
chrY	3137003	3137103	19293909	0	+	0.45	(0.42,0.455]	chrY	1639989	164	INTRON	INTRON	LINC00278	ENSG00000231535.7	ENST00000665487.1:ENST00000651090.1	lncRNA	lncRNA	lncRNA	lncRNA	2	176	2	4.93872	5.7358150000000006	6.53291	5.07972e-8	1e-12	3.4372e-6	2.25522e-10
chr1	236981523	236981615	772167	0	+	0.543478	(0.53,0.59]	chr1	77965	3	EXON_PSEUDO	EXON_PSEUDO	RPL35P1	ENSG00000237991.3	ENST00000450819.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	72	2	4.66936	5.734985	6.80061	0.00103174	1.30714e-9	0.0121443	1.32956e-7
chr19	19132351	19132419	17502188	0	-	0.544118	(0.53,0.59]	chr19	1468675	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000590216.6:ENST00000592369.1:ENST00000587915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.57931	5.734565	5.88982	1.05602e-5	1.39814e-6	2.89015e-4	5.82056e-5
chr7	93215590	93215685	8927883	0	-	0.568421	(0.53,0.59]	chr7	681285	3	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.57931	5.734565	5.88982	1.05602e-5	1.39814e-6	2.89015e-4	5.82056e-5
chr7	107752444	107752544	8457063	0	+	0.42	(0.39,0.42]	chr7	646225	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000432748.5:ENST00000487517.1:ENST00000493361.5:ENST00000415884.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.20435	5.733945	6.26354	2.91423e-5	3.79414e-8	7.26551e-4	2.43463e-6
chr1	21854915	21854983	890980	0	-	0.647059	(0.59,1]	chr1	92400	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.55681	5.733915	5.91102	1.60495e-4	2.06903e-5	0.00286914	4.99825e-4
chr19	46787492	46787585	17595592	0	-	0.741935	(0.59,1]	chr19	1481428	2	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	12	1184	2	5.00422	5.73341	6.4626	3.46945e-12	1e-12	7.38709e-10	2.25522e-10
chr15	72346661	72346710	15369458	0	-	0.469388	(0.455,0.49]	chr15	1214426	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.07172	5.7327650000000006	6.39381	8.3067e-5	1.45725e-8	0.00171126	1.07259e-6
chr15	42226804	42226856	15238993	0	-	0.5	(0.49,0.53]	chr15	1200188	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000564329.1:ENST00000566014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.24579	5.731920000000001	6.21805	4.073e-5	7.46967e-8	9.64741e-4	4.33833e-6
chr12	7829845	7829925	13192514	0	-	0.525	(0.49,0.53]	chr12	1033412	2	CDS	CDS:EXON_MRNA:INTRON	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5:ENST00000546234.5:ENST00000542782.5:ENST00000535344.5:ENST00000537557.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.5439	5.731624999999999	5.91935	8.44877e-6	5.27035e-7	2.39255e-4	2.57927e-5
chr7	4151559	4151659	8107566	0	+	0.52	(0.49,0.53]	chr7	619505	17	INTRON	INTRON	SDK1	ENSG00000146555.19	ENST00000404826.7:ENST00000615806.4:ENST00000389531.7:ENST00000476701.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.16557	5.729285	6.293	6.36135e-5	4.1349e-8	0.00136069	2.61265e-6
chr17	81855223	81855279	16709623	0	-	0.571429	(0.53,0.59]	chr17	1377712	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	440	2	5.25166	5.728185	6.20471	6.31859e-9	1e-12	5.70347e-7	2.25522e-10
chr6	57004612	57004705	7190414	0	+	0.451613	(0.42,0.455]	chr6	555930	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	BEND6:FTH1P15	ENSG00000151917.18:ENSG00000218980.2	ENST00000370746.8:ENST00000370748.7:ENST00000370745.1:ENST00000406984.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	65	2	4.67981	5.725225	6.77064	5.38444e-4	6.24308e-10	0.00744072	6.87794e-8
chr9	91905281	91905381	10734853	0	-	0.44	(0.42,0.455]	chr9	812027	182	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.51675	5.724965	5.93318	5.14372e-6	5.79703e-7	1.73456e-4	2.50873e-5
chr2	239150357	239150456	3242102	0	-	0.434343	(0.42,0.455]	chr2	285860	53	INTRON	INTRON	HDAC4	ENSG00000068024.17	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000461113.5:ENST00000553145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	5.67486	5.72469	5.77452	3.42598e-6	8.63204e-7	1.12506e-4	3.91474e-5
chr8	67678234	67678334	9872453	0	-	0.36	(0.33,0.36]	chr8	746471	536	INTRON	INTRON	CPA6	ENSG00000165078.13	ENST00000297770.10:ENST00000638254.1:ENST00000479862.6:ENST00000518549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	5.49093	5.72448	5.95803	3.50796e-6	2.53891e-7	1.26658e-4	1.24442e-5
chr6	153282375	153282464	8031076	0	-	0.505618	(0.49,0.53]	chr6	614220	2	EXON_PSEUDO	EXON_PSEUDO	RP11-475C16.1	ENSG00000218426.5	ENST00000492974.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	52	2	5.52837	5.724185	5.92	7.50805e-6	6.89283e-7	2.3779e-4	2.91313e-5
chr16	29664101	29664192	15626150	0	+	0.56044	(0.53,0.59]	chr16	1239195	4	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	243	2	4.8326	5.72414	6.61568	2.39054e-9	1e-12	2.245e-7	2.46312e-10
chr20	32858654	32858751	17755898	0	+	0.340206	(0.33,0.36]	chr20	1498957	22	EXON_LNCRNA	EXON_LNCRNA	RP5-1085F17.3	ENSG00000260257.2	ENST00000569087.2	lncRNA	lncRNA	lncRNA	lncRNA	1	75	2	4.57869	5.72315	6.86761	1.14009e-6	8.58217e-11	4.91686e-5	1.18534e-8
chr6	36157967	36158067	7679789	0	-	0.34	(0.33,0.36]	chr6	588771	107	INTRON	INTRON	RP1-179N16.6	ENSG00000246982.7	ENST00000526611.5	lncRNA	lncRNA	lncRNA	lncRNA	1	75	2	4.57869	5.72315	6.86761	1.14009e-6	8.58217e-11	4.91686e-5	1.18534e-8
chrX	87703916	87704011	19141903	0	-	0.557895	(0.53,0.59]	chrX	1627927	7	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	153	2	4.39426	5.722770000000001	7.05128	7.43388e-9	1.30216e-10	6.01751e-7	1.90274e-8
chr11	88294266	88294346	12533065	0	-	0.475	(0.455,0.49]	chr11	972520	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	84	2	5.05154	5.722675000000001	6.39381	1.98728e-8	1.45725e-8	1.52826e-6	1.07259e-6
chr11	5254475	5254514	12240613	0	-	0.538462	(0.53,0.59]	chr11	946081	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA	CTD-2643I7.4:HBG2:CTD-2643I7.5	ENSG00000284931.1:ENSG00000196565.15:ENSG00000239920.2	ENST00000642908.1:ENST00000647543.1:ENST00000336906.6:ENST00000380252.6:ENST00000444587.1:ENST00000380259.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	114	6894	2	5.6361	5.7226	5.8091	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	17815943	17816028	16465710	0	-	0.682353	(0.59,1]	chr17	1344700	2	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000447641.5:ENST00000490796.1:ENST00000584760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.64515	5.7213449999999995	5.79754	1.07144e-4	3.712e-5	0.00206452	8.06532e-4
chrX	77857426	77857497	19129269	0	-	0.408451	(0.39,0.42]	chrX	1626890	2	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	89	2	5.46143	5.72134	5.98125	1.28715e-7	5.62612e-10	7.78377e-6	6.28917e-8
chr1	160999926	160999978	1331446	0	-	0.519231	(0.49,0.53]	chr1	136443	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	178	2	4.98392	5.720715	6.45751	4.13969e-8	1e-12	2.89671e-6	2.25522e-10
chr17	81847342	81847347	16709537	0	-	0.2	[0,0.29]	chr17	1377696	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.92321	5.72067	6.51813	1.17014e-4	1.41602e-9	0.00222617	1.42988e-7
chr3	100054502	100054602	3632569	0	+	0.37	(0.36,0.39]	chr3	311367	28	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	5.63354	5.71924	5.80494	1.45096e-6	9.78955e-7	6.01084e-5	3.91899e-5
chr21	34096178	34096276	18104978	0	+	0.520408	(0.49,0.53]	chr21	1534981	10	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	115	2	4.45834	5.718095	6.97785	4.55418e-8	1.04183e-10	3.14461e-6	1.40718e-8
chr3	43576881	43576976	4145657	0	-	0.536842	(0.53,0.59]	chr3	346463	3	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.69411	5.7168399999999995	5.73957	5.01544e-6	3.90343e-6	1.7067e-4	1.26306e-4
chr7	44581448	44581511	8800249	0	-	0.507937	(0.49,0.53]	chr7	671346	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	93	2	4.49833	5.7150099999999995	6.93169	1.88388e-6	1.60939e-10	7.53959e-5	2.05975e-8
chr12	110343298	110343366	13085877	0	+	0.544118	(0.53,0.59]	chr12	1020538	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	121	2	5.5853	5.714825	5.84435	9.83355e-6	2.83514e-11	2.98194e-4	4.41773e-9
chr17	75035131	75035231	16352991	0	+	0.47	(0.455,0.49]	chr17	1326903	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KCTD2	ENSG00000180901.11	ENST00000579242.5:ENST00000582840.5:ENST00000584767.5:ENST00000584570.5:ENST00000581589.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	223	10620	2	5.71212	5.714675	5.71723	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	161674016	161674073	501572	0	+	0.508772	(0.49,0.53]	chr1	54368	2	CDS	CDS:EXON_MRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.46274	5.71464	5.96654	1.13094e-5	4.9393e-7	3.3464e-4	2.18407e-5
chr1	179918139	179918239	580804	0	+	0.47	(0.455,0.49]	chr1	60266	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.37609	5.7131	6.05011	2.05373e-5	1.27868e-7	4.97369e-4	7.7505e-6
chr10	7163076	7163175	11359215	0	-	0.414141	(0.39,0.42]	chr10	866204	46	UTR3	UTR3:EXON_MRNA	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.60958	5.712745	5.81591	2.11003e-6	1.11558e-6	8.25026e-5	4.4003e-5
chr3	73027807	73027873	3556313	0	+	0.424242	(0.42,0.455]	chr3	309012	1	EXON_SMALL	EXON_SMALL:INTRON	PPP4R2:RNU7-19P	ENSG00000163605.15:ENSG00000238959.1	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2:ENST00000459135.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	5.44441	5.712065000000001	5.97972	8.23077e-6	4.13864e-7	2.56136e-4	1.88179e-5
chr8	143021633	143021689	9647074	0	+	0.535714	(0.53,0.59]	chr8	730768	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	LY6E	ENSG00000160932.11	ENST00000517503.1:ENST00000429120.6:ENST00000521699.5:ENST00000520466.5:ENST00000520531.5:ENST00000292494.11:ENST00000522528.5:ENST00000521003.5:ENST00000522971.5:ENST00000519611.5:ENST00000521182.5:ENST00000519546.5:ENST00000523847.5:ENST00000522024.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.5853	5.711305	5.8373100000000004	9.83355e-6	2.06883e-6	2.98194e-4	7.35008e-5
chr1	40080452	40080487	954750	0	-	0.542857	(0.53,0.59]	chr1	100882	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	4.66936	5.710335000000001	6.75131	0.00103174	1.99745e-9	0.0121443	1.9363e-7
chr1	34983766	34983843	936107	0	-	0.532468	(0.53,0.59]	chr1	98346	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-244H3.5:RP11-244H3.4:TMEM35B	ENSG00000284773.1:ENSG00000271741.1:ENSG00000243749.1	ENST00000417456.1:ENST00000487874.1:ENST00000373337.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.399	5.709965	6.02093	3.02387e-5	5.66478e-7	6.78876e-4	2.7364e-5
chr6	26104103	26104159	7101127	0	+	0.482143	(0.455,0.49]	chr6	542788	2	CDS	CDS:EXON_MRNA	H4C3	ENSG00000197061.5	ENST00000377803.4	protein_coding	protein_coding	protein_coding	protein_coding	5	250	2	4.89356	5.70795	6.52234	3.63398e-12	1e-12	7.10269e-10	2.46312e-10
chr19	11105504	11105600	17230019	0	+	0.583333	(0.53,0.59]	chr19	1419555	4	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	5.66981	5.707695	5.74558	3.61407e-6	1.50212e-10	1.29307e-4	1.94457e-8
chr6	44230810	44230845	7161492	0	+	0.485714	(0.455,0.49]	chr6	553795	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000472176.2:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	257	2	5.41261	5.70728	6.00195	1.86149e-7	1e-12	1.07114e-5	2.25522e-10
chr2	73250305	73250371	1885481	0	+	0.545455	(0.53,0.59]	chr2	178574	1	CDS	CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	5	201	2	3.42122	5.704345	7.98747	1.28206e-6	1e-12	5.45614e-5	2.25522e-10
chr20	52110784	52110872	18011834	0	-	0.5	(0.49,0.53]	chr20	1526706	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZFP64:ERP29P1	ENSG00000020256.20:ENSG00000233347.1	ENST00000371518.6:ENST00000361387.6:ENST00000477786.5:ENST00000442902.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	0	73	2	4.4279	5.702875000000001	6.97785	0.00196987	1.04183e-10	0.0193972	1.40718e-8
chr9	17430341	17430441	10201610	0	+	0.26	[0,0.29]	chr9	767325	138	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8:ENST00000461247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.92321	5.702135	6.48106	1.17014e-4	2.00017e-9	0.00222617	1.93786e-7
chr11	837941	838028	11759161	0	+	0.609195	(0.59,1]	chr11	898598	1	CDS	CDS:EXON_MRNA	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000532045.6:ENST00000530726.5:ENST00000528011.2:ENST00000532075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	137	2	4.88606	5.70213	6.5182	1.03659e-6	6.99048e-7	4.55345e-5	2.94405e-5
chr9	87731007	87731107	10347589	0	+	0.55	(0.53,0.59]	chr9	778736	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	129	2	4.77783	5.702014999999999	6.6262	5.38303e-9	3.90914e-9	4.93144e-7	3.44174e-7
chr15	42226856	42226909	15238994	0	-	0.603774	(0.59,1]	chr15	1200188	2	CDS	CDS:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000564329.1:ENST00000566014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.67437	5.70138	5.72839	7.24021e-5	6.83706e-5	0.0015254	0.00132577
chr10	67874331	67874427	11088183	0	+	0.625	(0.59,1]	chr10	842608	1	EXON_PSEUDO	EXON_PSEUDO	RPL12P8	ENSG00000219932.6	ENST00000482081.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	73	2	5.13679	5.70049	6.26419	9.28022e-4	2.94176e-6	0.0111748	9.91141e-5
chr17	75778642	75778694	16684892	0	-	0.5	(0.49,0.53]	chr17	1373460	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8:ENST00000593254.1:ENST00000586518.1:ENST00000592643.5:ENST00000591890.5:ENST00000589949.1:ENST00000587560.5:ENST00000589599.5:ENST00000586607.5:ENST00000586270.5:ENST00000587171.1:ENST00000589417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	130	2	5.25086	5.698095	6.14533	9.58343e-8	2.86495e-11	6.01659e-6	4.4541e-9
chr11	75571847	75571915	12023388	0	+	0.602941	(0.59,1]	chr11	927025	2	CDS	CDS:UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000533449.6:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	275	2	5.68809	5.697979999999999	5.70787	3.39781e-9	2.5713e-9	3.32573e-7	2.40182e-7
chr15	34373829	34373926	15204933	0	-	0.536082	(0.53,0.59]	chr15	1196923	4	EXON_PSEUDO	EXON_PSEUDO	ACTG1P15	ENSG00000259904.1	ENST00000570019.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	56	2	5.33948	5.697785	6.05609	4.08763e-5	4.62627e-7	9.64741e-4	2.06661e-5
chr9	76386510	76386609	10694383	0	-	0.252525	[0,0.29]	chr9	809404	11	UTR3	UTR3:EXON_MRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	5.20404	5.697509999999999	6.19098	2.26341e-5	2.63546e-8	5.9266e-4	1.78502e-6
chr1	179348843	179348942	576467	0	+	0.434343	(0.42,0.455]	chr1	59839	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.20268	5.697475	6.19227	3.59669e-5	8.32224e-8	8.71318e-4	4.76997e-6
chr16	85400237	85400337	15795320	0	+	0.41	(0.39,0.42]	chr16	1256986	409	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.16347	5.697395	6.23132	6.48089e-5	1.58426e-8	0.00126536	1.25869e-6
chr13	29522386	29522456	13945305	0	-	0.457143	(0.455,0.49]	chr13	1094578	2	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.07172	5.69713	6.32254	8.3067e-5	2.62373e-8	0.00171126	1.77777e-6
chr19	11445388	11445473	17231220	0	+	0.623529	(0.59,1]	chr19	1419907	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000589990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	483	2	5.54632	5.69708	5.84784	1.6391e-10	8.43769e-12	2.33535e-8	1.49505e-9
chr12	49128644	49128742	13323975	0	-	0.530612	(0.53,0.59]	chr12	1045746	7	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	1148	2	5.03484	5.6969899999999996	6.35914	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	14141643	14141695	3319492	0	+	0.673077	(0.59,1]	chr3	292107	2	CDS	CDS:EXON_MRNA:INTRON	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.58599	5.69654	5.80709	1.04372e-4	4.94887e-5	0.00186841	0.00112479
chrX	117914345	117914444	19188184	0	-	0.393939	(0.39,0.42]	chrX	1631282	1	INTRON	INTRON	KLHL13	ENSG00000003096.14	ENST00000371882.5:ENST00000541812.5:ENST00000545703.5:ENST00000540167.5:ENST00000262820.7:ENST00000371878.5:ENST00000371876.5:ENST00000469946.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.98825	5.69623	6.40421	1.62756e-4	3.36859e-9	0.00266622	3.30022e-7
chr11	44124788	44124886	11926375	0	+	0.530612	(0.53,0.59]	chr11	911544	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	150	2	3.62271	5.69614	7.76957	2.78569e-5	1e-12	7.05707e-4	2.25522e-10
chr1	21830981	21831035	890692	0	-	0.685185	(0.59,1]	chr1	92242	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	193	2	3.76806	5.69571	7.62336	2.44895e-5	6.55089e-10	5.72766e-4	7.90927e-8
chr12	49264980	49265080	12865630	0	+	0.76	(0.59,1]	chr12	999043	66	INTRON	INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.30893	5.695625	6.08232	4.67312e-4	8.23309e-6	0.00661038	2.34786e-4
chr7	34773970	34774070	8223880	0	+	0.44	(0.42,0.455]	chr7	627067	204	INTRON	INTRON	NPSR1	ENSG00000187258.14	ENST00000360581.6:ENST00000381553.7:ENST00000359791.5:ENST00000531252.5:ENST00000396095.6:ENST00000381542.5:ENST00000381544.6:ENST00000381539.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.91213	5.6951599999999996	6.47819	1.75074e-4	8.14533e-9	0.00306313	6.49842e-7
chr19	11129523	11129596	17230283	0	+	0.465753	(0.455,0.49]	chr19	1419633	2	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	158	2	5.11645	5.694710000000001	6.27297	1.11399e-8	1e-12	9.34089e-7	2.25522e-10
chr1	158078140	158078240	491649	0	+	0.52	(0.49,0.53]	chr1	52319	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KIRREL1	ENSG00000183853.18	ENST00000368173.7:ENST00000360089.8:ENST00000359209.11	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.99034	5.69447	6.3986	1.6002e-4	1.75841e-8	0.00286408	1.26398e-6
chr1	65617963	65618054	253491	0	+	0.384615	(0.36,0.39]	chr1	28871	1	CDS	CDS:EXON_MRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	5.2562	5.69403	6.13186	2.76105e-8	3.39446e-9	2.02995e-6	3.05301e-7
chrX	120446304	120446365	19196227	0	-	0.409836	(0.39,0.42]	chrX	1631991	1	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.63883	5.69396	6.74909	5.68159e-4	5.66329e-10	0.0077844	6.31253e-8
chr11	1753993	1754080	12230427	0	-	0.678161	(0.59,1]	chr11	944383	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000497544.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	184	2	4.65039	5.69269	6.73499	2.75669e-7	8.4843e-8	1.49016e-5	4.85329e-6
chr4	144116853	144116939	5696607	0	-	0.395349	(0.39,0.42]	chr4	451537	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	11	590	2	5.23809	5.69209	6.14609	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	8088200	8088297	8122321	0	+	0.28866000000000003	[0,0.29]	chr7	621148	18	UTR3	UTR3:EXON_MRNA:INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000438949.1:ENST00000482540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	5.23968	5.692005	6.14433	3.90698e-8	4.96982e-9	2.49328e-6	4.58913e-7
chr3	148563619	148563719	4507649	0	-	0.42	(0.39,0.42]	chr3	374116	1077	INTRON	INTRON	RP11-455G2.1	ENSG00000285557.1	ENST00000648979.1	lncRNA	lncRNA	lncRNA	lncRNA	21	1013	2	4.1213	5.69187	7.26244	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	112659668	112659762	2001884	0	+	0.521277	(0.49,0.53]	chr2	190042	6	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.46274	5.69137	5.92	1.13094e-5	6.89283e-7	3.3464e-4	2.91313e-5
chr1	21823615	21823667	890602	0	-	0.653846	(0.59,1]	chr1	92202	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000481644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.03834	5.6913599999999995	6.34438	0.00108238	2.85814e-6	0.0118355	1.07102e-4
chr13	20961309	20961407	13633276	0	+	0.510204	(0.49,0.53]	chr13	1074745	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP54	ENSG00000213621.3	ENST00000454001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	181	2	4.85113	5.691185000000001	6.53124	1.24602e-7	1e-12	7.5922e-6	2.25522e-10
chr10	32910222	32910299	11443981	0	-	0.428571	(0.42,0.455]	chr10	872630	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	89	2	5.33801	5.6905	6.04299	1.1188e-7	2.01184e-9	6.92817e-6	1.94688e-7
chr1	147178271	147178366	453643	0	+	0.494737	(0.49,0.53]	chr1	45093	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	0	61	2	4.79086	5.689985	6.58911	4.20783e-4	3.52807e-9	0.00611538	3.14964e-7
chr12	110346285	110346370	13085912	0	+	0.564706	(0.53,0.59]	chr12	1020552	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	147	2	5.31529	5.688705000000001	6.06212	4.23179e-7	2.46656e-11	2.1371e-5	3.8956e-9
chr19	48390429	48390524	17601749	0	-	0.494737	(0.49,0.53]	chr19	1482734	1	CDS	CDS:UTR5:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5:ENST00000600980.1:ENST00000599084.1:ENST00000594643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	321	2	5.42375	5.687075	5.9504	3.67972e-12	1e-12	7.74293e-10	2.25522e-10
chr16	74469004	74469063	16031170	0	-	0.610169	(0.59,1]	chr16	1287297	2	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.13679	5.68611	6.23543	9.28022e-4	3.47367e-6	0.0111748	1.13687e-4
chr1	19230903	19230963	877257	0	-	0.55	(0.53,0.59]	chr1	90457	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	5.52814	5.6857299999999995	5.84332	1.90853e-6	5.58677e-10	7.59317e-5	6.25722e-8
chr7	4876804	4876904	8656428	0	-	0.63	(0.59,1]	chr7	661744	111	INTRON	INTRON	RADIL	ENSG00000157927.17	ENST00000399583.4:ENST00000445392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	4.2353	5.6853	7.1353	0.0165254	1.08142e-8	0.0873033	8.30114e-7
chr3	136328757	136328857	3763147	0	+	0.54	(0.53,0.59]	chr3	321898	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.12301	5.684514999999999	6.24602	1.2852e-4	1.15746e-7	0.00241206	6.3314e-6
chr2	60735350	60735441	2685800	0	-	0.373626	(0.36,0.39]	chr2	239742	6	EXON_PSEUDO	EXON_PSEUDO	ATP1B3P1	ENSG00000271707.1	ENST00000605365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	51	2	4.98743	5.684355	6.38128	8.82225e-5	1.07346e-8	0.00178337	8.24229e-7
chrX	77853900	77853964	19129230	0	-	0.375	(0.36,0.39]	chrX	1626874	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.0994	5.68332	6.26724	4.68763e-5	2.79819e-8	0.00107286	1.8758e-6
chr19	53979466	53979566	17389524	0	+	0.47	(0.455,0.49]	chr19	1446938	2	SS3_PROX	SS3_PROX:INTRON	CACNG8	ENSG00000142408.7	ENST00000270458.4	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.87186	5.68319	6.49452	2.33781e-4	6.22217e-9	0.00385436	5.13192e-7
chr17	63756468	63756519	16634774	0	-	0.509804	(0.49,0.53]	chr17	1367594	1	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	120	2	4.01076	5.683115000000001	7.35547	1.7263e-6	2.54452e-12	6.99335e-5	5.17631e-10
chr1	21824536	21824615	890617	0	-	0.683544	(0.59,1]	chr1	92212	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	182	2	4.3946	5.68257	6.97054	6.3212e-7	3.38266e-8	2.99938e-5	2.20259e-6
chrX	138631853	138631952	19251282	0	-	0.343434	(0.33,0.36]	chrX	1635533	173	UTR3	UTR3:EXON_MRNA	FGF13	ENSG00000129682.16	ENST00000315930.11:ENST00000305414.8	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	5.48855	5.6820699999999995	5.87559	1.95052e-7	3.24934e-10	1.11133e-5	3.88099e-8
chr19	12878669	12878751	17471767	0	-	0.560976	(0.53,0.59]	chr19	1463257	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1:ENST00000592506.1:ENST00000586547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	112	2	5.66981	5.68196	5.69411	5.01544e-6	1.50212e-10	1.7067e-4	1.94457e-8
chr18	80023922	80024022	17186353	0	-	0.37	(0.36,0.39]	chr18	1410524	281	INTRON	INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	140	2	5.10049	5.681955	6.26342	1.14212e-8	1e-12	9.5119e-7	2.25522e-10
chr19	21405028	21405128	17271692	0	+	0.33	(0.29,0.33]	chr19	1427225	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	5.66719	5.6817150000000005	5.69624	1.7577e-6	7.29486e-7	6.42329e-5	3.41021e-5
chrX	49332737	49332821	18694591	0	+	0.511905	(0.49,0.53]	chrX	1594848	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE13	ENSG00000274274.1	ENST00000612958.1	protein_coding	protein_coding	protein_coding	protein_coding	3	134	2	4.22766	5.681380000000001	7.1351	2.55711e-8	1.34585e-11	1.74108e-6	2.47893e-9
chr10	96551244	96551327	11640399	0	-	0.337349	(0.33,0.36]	chr10	886605	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000490192.1:ENST00000443638.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	5.08655	5.68093	6.27531	4.6453e-5	1.97595e-8	0.00106753	1.39155e-6
chr4	110051599	110051680	5595069	0	-	0.518519	(0.49,0.53]	chr4	446475	3	CDS	CDS:UTR3:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	4.74284	5.680695	6.61855	2.96405e-7	2.73279e-9	1.59277e-5	2.53367e-7
chr7	6024116	6024209	8662405	0	-	0.419355	(0.39,0.42]	chr7	662531	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1	protein_coding	protein_coding	protein_coding	protein_coding	19	595	2	4.52228	5.680545	6.83881	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	88294185	88294266	12533064	0	-	0.469136	(0.455,0.49]	chr11	972520	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	85	2	5.13282	5.68047	6.22812	3.0313e-8	1.20095e-8	2.20766e-6	9.06312e-7
chr1	150513236	150513301	468361	0	+	0.507692	(0.49,0.53]	chr1	47414	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.3469	5.680465	6.01403	2.75121e-5	2.61944e-7	6.30607e-4	1.42854e-5
chr7	103486196	103486269	8963098	0	-	0.506849	(0.49,0.53]	chr7	686065	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1:ENST00000473945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.39399	5.680265	5.96654	1.71804e-5	4.9393e-7	4.72485e-4	2.18407e-5
chr19	10287681	10287755	17224669	0	+	0.621622	(0.59,1]	chr19	1418517	3	CDS	CDS:EXON_MRNA	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.60165	5.679645000000001	5.75764	1.30928e-4	4.53637e-5	0.00243846	9.4617e-4
chr1	150511549	150511643	468340	0	+	0.617021	(0.59,1]	chr1	47402	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.338	5.67915	6.0203	3.196e-4	1.68221e-5	0.00457916	4.64895e-4
chr11	1491677	1491777	12229825	0	-	0.45	(0.42,0.455]	chr11	944267	50	INTRON	INTRON	MOB2	ENSG00000182208.14	ENST00000526462.5:ENST00000529380.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	0	51	2	5.0468	5.67867	6.31054	1.33918e-4	1.21087e-8	0.00229039	1.00007e-6
chr1	233289447	233289546	1556702	0	-	0.545455	(0.53,0.59]	chr1	155669	1	INTRON	INTRON	PCNX2	ENSG00000135749.19	ENST00000258229.14	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.33948	5.677195	6.01491	4.08763e-5	6.18274e-7	9.64741e-4	2.65059e-5
chr19	12668358	12668425	17469921	0	-	0.58209	(0.53,0.59]	chr19	1462818	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.33948	5.677195	6.01491	4.08763e-5	6.18274e-7	9.64741e-4	2.65059e-5
chr11	88334998	88335061	12533491	0	-	0.460317	(0.455,0.49]	chr11	972575	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000676529.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	4.28007	5.677105	7.07414	8.3464e-6	2.99496e-11	2.58924e-4	4.62749e-9
chr12	119681124	119681224	13114523	0	+	0.42	(0.39,0.42]	chr12	1023559	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	5.29502	5.676015	6.05701	1.68146e-5	1.91744e-7	4.64895e-4	9.81202e-6
chr11	60066968	60067068	11961677	0	+	0.39	(0.36,0.39]	chr11	915681	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	109	2	4.19564	5.675174999999999	7.15471	3.16598e-8	7.24432e-12	2.29924e-6	1.30346e-9
chr11	60921967	60922065	11967048	0	+	0.693878	(0.59,1]	chr11	916466	3	CDS	CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	2	177	2	4.27565	5.674939999999999	7.07423	1.0823e-6	3.0626e-8	4.28015e-5	2.22812e-6
chrX	154435273	154435350	18917910	0	+	0.597403	(0.59,1]	chrX	1611923	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	219	2	3.31617	5.674695	8.03322	3.02114e-4	1.25665e-11	0.00472028	2.12827e-9
chr11	33633320	33633419	11904478	0	+	0.494949	(0.49,0.53]	chr11	909410	143	INTRON	INTRON	KIAA1549L	ENSG00000110427.17	ENST00000658780.2:ENST00000321505.9	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.28332	5.67465	7.06598	0.00338762	4.48874e-11	0.0288632	6.67252e-9
chr6	149593981	149594074	7481398	0	+	0.483871	(0.455,0.49]	chr6	571726	1	EXON_LNCRNA	EXON_LNCRNA	RPS18P9	ENSG00000220848.5	ENST00000648980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	59	2	4.76048	5.674565	6.58865	3.99985e-4	2.75015e-9	0.00588767	2.54234e-7
chr6	122456565	122456650	7923854	0	-	0.376471	(0.36,0.39]	chr6	606840	2	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	4.30503	5.674335	7.04364	7.76959e-6	2.24244e-11	2.43892e-4	3.58217e-9
chr15	94855373	94855473	15124722	0	+	0.27	[0,0.29]	chr15	1190044	138	INTRON	INTRON	RP11-255M2.3	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	41	2	5.20404	5.674185	6.14433	2.26341e-5	3.90698e-8	5.9266e-4	2.49328e-6
chr9	136370042	136370125	10889975	0	-	0.674699	(0.59,1]	chr9	827217	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARD9	ENSG00000187796.15	ENST00000481053.5:ENST00000371734.7:ENST00000371732.10:ENST00000485975.1:ENST00000489932.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	246	2	4.85291	5.67376	6.49461	1.19255e-6	1.88564e-9	5.10538e-5	1.83915e-7
chr1	21831651	21831723	890704	0	-	0.680556	(0.59,1]	chr1	92252	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	139	2	4.28843	5.67333	7.05823	2.52144e-5	3.40806e-8	5.85193e-4	2.45635e-6
chr18	13701067	13701167	17024762	0	-	0.43	(0.42,0.455]	chr18	1399474	30	INTRON	INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000592976.5:ENST00000591269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.11218	5.671725	6.23127	6.01815e-5	6.12952e-8	0.00130886	3.67043e-6
chr19	4664875	4664937	17433140	0	-	0.580645	(0.53,0.59]	chr19	1455349	1	CDS	CDS:EXON_MRNA	MYDGF	ENSG00000074842.8	ENST00000599761.5:ENST00000262947.8:ENST00000599630.1:ENST00000596031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	121	2	5.46762	5.670775	5.87393	1.97761e-5	2.126e-11	5.29643e-4	3.41926e-9
chr7	106097827	106097897	8977687	0	-	0.4	(0.39,0.42]	chr7	687040	3	CDS	CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	81	2	4.48264	5.668845	6.85505	1.99404e-6	2.10746e-10	7.88826e-5	2.63404e-8
chr10	70233263	70233327	11560927	0	-	0.65625	(0.59,1]	chr10	879681	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	140	2	5.15954	5.66811	6.17668	7.29392e-6	1.13516e-7	2.3256e-4	6.23788e-6
chr19	35654620	35654671	17306049	0	+	0.607843	(0.59,1]	chr19	1431263	2	CDS	CDS:EXON_MRNA:INTRON	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000652250.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	184	2	4.7246	5.666729999999999	6.60886	6.00443e-7	5.01212e-8	2.85621e-5	3.09165e-6
chr1	160350177	160350250	496715	0	+	0.356164	(0.33,0.36]	chr1	53454	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000467837.5:ENST00000459963.5:ENST00000424645.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.83198	5.666415	6.50085	1.88689e-4	2.75564e-9	0.0032588	2.54269e-7
chr15	65564278	65564342	14980029	0	+	0.5	(0.49,0.53]	chr15	1177579	2	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1:ENST00000624437.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	1	96	2	4.20376	5.666235	7.12871	1.43152e-5	2.44206e-11	4.04062e-4	3.8639e-9
chr12	65779314	65779413	13382615	0	-	0.464646	(0.455,0.49]	chr12	1054438	199	INTRON	INTRON	RPSAP52	ENSG00000241749.4	ENST00000489520.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	51	2	5.06282	5.666105	6.26939	1.16789e-4	2.14641e-8	0.0020505	1.62968e-6
chr1	30739872	30739937	915625	0	-	0.553846	(0.53,0.59]	chr1	95887	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	169	2	5.61155	5.665545	5.71954	2.49213e-10	9.39103e-11	3.39778e-8	1.28737e-8
chr19	49430052	49430145	17606393	0	-	0.430108	(0.42,0.455]	chr19	1483928	8	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.28782	5.665405	6.04299	3.65299e-5	1.1188e-7	7.95843e-4	6.92817e-6
chr3	33014225	33014310	4111111	0	-	0.494118	(0.49,0.53]	chr3	343432	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	5.36265	5.66506	5.96747	3.70439e-7	1.68866e-9	1.92378e-5	1.66802e-7
chr1	19230843	19230903	877256	0	-	0.5	(0.49,0.53]	chr1	90457	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	4.98933	5.6649899999999995	6.34065	1.98867e-8	3.87256e-10	1.52826e-6	4.52619e-8
chr1	43364927	43365008	968556	0	-	0.580247	(0.53,0.59]	chr1	102063	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	0	53	2	5.64073	5.66442	5.68811	7.00135e-6	5.40688e-6	2.25852e-4	1.64762e-4
chr11	315208	315272	11756480	0	+	0.421875	(0.42,0.455]	chr11	897777	1	UTR3	UTR3:EXON_MRNA	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000528780.5:ENST00000328221.5:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	98	2	5.65139	5.663965	5.67654	2.06893e-6	8.00905e-11	8.11386e-5	1.11858e-8
chr14	103913929	103913984	14797156	0	-	0.327273	(0.29,0.33]	chr14	1159809	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000554287.1:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2:ENST00000557260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	5.31775	5.66338	6.00901	1.06766e-5	1.36977e-7	3.17854e-4	7.34618e-6
chr19	14159773	14159873	17478945	0	-	0.55	(0.53,0.59]	chr19	1464324	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADGRL1	ENSG00000072071.16	ENST00000340736.10:ENST00000361434.7:ENST00000589616.1:ENST00000588677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	5.39163	5.663245	5.93486	1.0295e-6	1.91188e-9	4.52516e-5	1.86267e-7
chr8	128040971	128041070	9615216	0	+	0.434343	(0.42,0.455]	chr8	728683	7	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	5.65139	5.663125	5.67486	3.42598e-6	2.06893e-6	1.12506e-4	8.11386e-5
chr18	5232875	5232965	17000266	0	-	0.5	(0.49,0.53]	chr18	1397057	1	EXON_LNCRNA	EXON_LNCRNA	RP11-835E18.5	ENSG00000265091.5	ENST00000581170.5:ENST00000579933.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	4.89405	5.6631	6.43215	2.57983e-4	1.33302e-8	0.00419998	9.93516e-7
chrX	138631952	138632052	19251283	0	-	0.33	(0.29,0.33]	chrX	1635533	174	UTR3	UTR3:EXON_MRNA	FGF13	ENSG00000129682.16	ENST00000315930.11:ENST00000305414.8	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	4.92048	5.663065	6.40565	7.83331e-8	4.82152e-9	5.03126e-6	4.11382e-7
chr7	29086483	29086550	8745159	0	-	0.313433	(0.29,0.33]	chr7	667277	1	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5:ENST00000458405.5:ENST00000447426.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.0833	5.662975	6.24265	4.57622e-5	2.00502e-8	0.00105479	1.40889e-6
chr19	44991237	44991305	17350315	0	+	0.573529	(0.53,0.59]	chr19	1439391	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000589347.1:ENST00000586975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.5853	5.662435	5.73957	9.83355e-6	3.90343e-6	2.98194e-4	1.26306e-4
chr1	78091961	78092054	314951	0	+	0.462366	(0.455,0.49]	chr1	31965	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	GIPC2:RP11-386I14.3	ENSG00000137960.6:ENSG00000213560.4	ENST00000476882.1:ENST00000370759.4:ENST00000448345.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	1	93	2	4.16204	5.6602250000000005	7.15841	1.83061e-5	1.29933e-11	4.99708e-4	2.19315e-9
chr4	3056085	3056185	4688727	0	+	0.47	(0.455,0.49]	chr4	389013	120	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000647962.1:ENST00000649900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	5.07172	5.65964	6.24756	8.3067e-5	4.80845e-8	0.00171126	2.97443e-6
chr16	81961826	81961925	15774409	0	+	0.292929	(0.29,0.33]	chr16	1255855	40	UTR3	UTR3:EXON_MRNA	PLCG2	ENSG00000197943.10	ENST00000564138.6	protein_coding	protein_coding	protein_coding	protein_coding	7	277	2	4.64877	5.6588650000000005	6.66896	3.10479e-11	1e-12	4.78448e-9	2.46312e-10
chr2	41820204	41820295	1759268	0	+	0.483516	(0.455,0.49]	chr2	170657	6	EXON_PSEUDO	EXON_PSEUDO	LDHAP3	ENSG00000236090.2	ENST00000448312.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	112	2	4.93109	5.658825	6.38656	7.86964e-9	6.13286e-10	6.92982e-7	6.78176e-8
chr2	41820295	41820387	1759269	0	+	0.51087	(0.49,0.53]	chr2	170657	7	EXON_PSEUDO	EXON_PSEUDO	LDHAP3	ENSG00000236090.2	ENST00000448312.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	65	2	4.55929	5.658329999999999	6.75737	0.00116196	7.98962e-10	0.0130851	8.57937e-8
chr1	230995759	230995834	751396	0	+	0.426667	(0.42,0.455]	chr1	76375	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.58564	5.6579999999999995	5.73036	3.24669e-6	2.37045e-6	1.18495e-4	8.28831e-5
chr4	868978	869076	5276272	0	-	0.510204	(0.49,0.53]	chr4	424387	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.39399	5.656995	5.92	1.71804e-5	6.89283e-7	4.72485e-4	2.91313e-5
chr1	51787979	51788075	191696	0	+	0.354167	(0.33,0.36]	chr1	24578	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	83	2	4.77776	5.656499999999999	6.53524	2.31654e-9	2.01817e-9	2.37418e-7	1.95043e-7
chr1	55058498	55058572	203792	0	+	0.635135	(0.59,1]	chr1	26160	1	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	245	2	3.58327	5.65524	7.72721	4.7067e-6	1.3798e-10	1.62873e-4	1.80228e-8
chr14	67733499	67733599	14683605	0	-	0.22	[0,0.29]	chr14	1149672	33	INTRON	INTRON	ZFYVE26	ENSG00000072121.17	ENST00000394455.6	protein_coding	retained_intron	protein_coding	retained_intron	1	68	2	5.41105	5.655145	5.89924	1.43969e-7	5.91806e-10	8.58934e-6	6.56086e-8
chr12	53415758	53415856	12886226	0	+	0.510204	(0.49,0.53]	chr12	1002329	47	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.5439	5.65423	5.76456	8.44877e-6	1.57714e-6	2.39255e-4	6.4504e-5
chr14	94726583	94726681	14470714	0	+	0.561224	(0.53,0.59]	chr14	1130296	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP4	ENSG00000239269.1	ENST00000488229.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	98	2	4.4133	5.65386	6.89442	4.11992e-6	5.75684e-10	1.44702e-4	6.40452e-8
chr18	45719797	45719896	16857554	0	+	0.565657	(0.53,0.59]	chr18	1388879	322	INTRON	INTRON	SLC14A1	ENSG00000141469.18	ENST00000644925.1	protein_coding	retained_intron	protein_coding	retained_intron	0	63	2	4.77222	5.653765	6.53531	6.67251e-4	1.20872e-8	0.00867533	9.09817e-7
chr3	18703772	18703872	3335532	0	+	0.59	(0.53,0.59]	chr3	293496	54	INTRON	INTRON	SATB1-AS1	ENSG00000228956.9	ENST00000627192.2:ENST00000628778.2:ENST00000595388.5:ENST00000626982.2:ENST00000630271.2:ENST00000683051.1:ENST00000425799.7	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	4.77222	5.653765	6.53531	6.67251e-4	1.20872e-8	0.00867533	9.09817e-7
chr12	53154017	53154110	12885194	0	+	0.462366	(0.455,0.49]	chr12	1002039	9	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P4	ENSG00000257790.1	ENST00000550578.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	47	2	5.57318	5.6533999999999995	5.73362	6.11867e-6	1.35346e-6	1.83393e-4	5.67444e-5
chr1	150967663	150967725	1291390	0	-	0.451613	(0.42,0.455]	chr1	128689	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000559660.1:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.11218	5.652225	6.19227	6.01815e-5	8.32224e-8	0.00130886	4.76997e-6
chr13	71675388	71675469	13778209	0	+	0.493827	(0.49,0.53]	chr13	1084198	5	EXON_PSEUDO	EXON_PSEUDO	H3P36	ENSG00000236534.1	ENST00000440551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	133	2	3.94726	5.651365	7.35547	2.67753e-7	2.54452e-12	1.45793e-5	5.17631e-10
chr19	48389552	48389631	17601737	0	-	0.556962	(0.53,0.59]	chr19	1482728	1	CDS	CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5:ENST00000600980.1:ENST00000599084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	429	2	4.45852	5.65111	6.8437	2.58005e-12	1e-12	5.23942e-10	2.46312e-10
chr22	36265247	36265345	18360622	0	+	0.469388	(0.455,0.49]	chr22	1561192	2	CDS	CDS:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000397278.8:ENST00000427990.5:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.61055	5.6508	5.69105	3.16146e-6	2.83777e-6	1.16228e-4	9.62519e-5
chr12	53985064	53985097	12889553	0	+	0.424242	(0.42,0.455]	chr12	1002669	1	UTR5	UTR5:EXON_MRNA	HOXC10	ENSG00000180818.5	ENST00000515593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	152	2	3.23839	5.650779999999999	8.06317	2.92986e-4	1e-12	0.00464297	2.25522e-10
chr9	95859903	95859959	10372888	0	+	0.339286	(0.33,0.36]	chr9	780884	1	EXON_SMALL	EXON_SMALL	RNU2-46P	ENSG00000252847.1	ENST00000517038.1	snRNA	snRNA	snRNA	snRNA	0	44	2	5.19876	5.65069	6.10262	2.37278e-5	8.18754e-8	6.1689e-4	4.71056e-6
chr5	86617997	86618055	6073029	0	+	0.568965	(0.53,0.59]	chr5	476379	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COX7C	ENSG00000127184.13	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	1154	2	5.2891	5.6506050000000005	6.01211	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	82372829	82372912	15412051	0	-	0.421687	(0.42,0.455]	chr15	1218601	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL9P9	ENSG00000237550.5	ENST00000418824.3:ENST00000466501.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	352	2	4.9215	5.65057	6.37964	4.90413e-10	1e-12	6.13378e-8	2.25522e-10
chr4	144001242	144001274	5696341	0	-	0.46875	(0.455,0.49]	chr4	451491	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	5.05154	5.64955	6.24756	4.80845e-8	1.98728e-8	2.97443e-6	1.52826e-6
chr13	29516137	29516191	13945236	0	-	0.592593	(0.59,1]	chr13	1094556	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.49184	5.649464999999999	5.80709	1.61513e-4	4.94887e-5	0.00265627	0.00112479
chr7	103565368	103565459	8963929	0	-	0.494505	(0.49,0.53]	chr7	686214	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.67972	5.649134999999999	6.61855	6.94757e-4	2.73279e-9	0.00876781	2.53367e-7
chr8	37744570	37744644	9289931	0	+	0.418919	(0.39,0.42]	chr8	710341	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000523887.5:ENST00000519638.3:ENST00000648919.1:ENST00000521993.3:ENST00000518586.5:ENST00000335171.10:ENST00000521644.5:ENST00000523107.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	5.38032	5.6487750000000005	5.91723	9.82886e-6	5.41457e-7	2.98194e-4	2.37407e-5
chr2	73243003	73243068	1885398	0	+	0.553846	(0.53,0.59]	chr2	178541	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCT7	ENSG00000135624.16	ENST00000471927.5:ENST00000469844.5:ENST00000492253.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5:ENST00000258091.10:ENST00000398422.2:ENST00000399032.2:ENST00000409924.7:ENST00000480489.5:ENST00000473786.5:ENST00000482064.1:ENST00000626868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.12301	5.648015	6.17302	1.2852e-4	1.98983e-7	0.00241206	1.01095e-5
chr2	238896547	238896647	2461412	0	+	0.54	(0.53,0.59]	chr2	222183	94	INTRON	INTRON	TWIST2	ENSG00000233608.4	ENST00000612363.2	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.12301	5.648015	6.17302	1.2852e-4	1.98983e-7	0.00241206	1.01095e-5
chr6	12514109	12514196	7056028	0	+	0.517241	(0.49,0.53]	chr6	540326	1	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	293	2	5.53427	5.647695000000001	5.76112	1e-12	1e-12	2.46312e-10	2.25522e-10
chr21	8393136	8393235	18041461	0	+	0.525253	(0.49,0.53]	chr21	1530861	43	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1572	78087	2	5.52302	5.6474150000000005	5.77181	3.48466e-12	1e-12	6.85307e-10	2.46312e-10
chr8	127740958	127741057	9612680	0	+	0.383838	(0.36,0.39]	chr8	728500	1	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	5.55185	5.646845	5.74184	1.24155e-10	2.93491e-11	1.82496e-8	4.55488e-9
chr12	56132508	56132597	12898286	0	+	0.483146	(0.455,0.49]	chr12	1004232	2	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	5.50165	5.64654	5.79143	8.96581e-7	4.07511e-10	4.03386e-5	4.7328e-8
chr1	167767827	167767926	524372	0	+	0.323232	(0.29,0.33]	chr1	56257	17	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	5.43822	5.645995	5.85377	2.10378e-7	4.78833e-10	1.18923e-5	5.4665e-8
chr7	144463863	144463963	9118866	0	-	0.45	(0.42,0.455]	chr7	696634	98	INTRON	INTRON	TPK1	ENSG00000196511.14	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.91213	5.64481	6.37749	1.75074e-4	1.88677e-8	0.00306313	1.34393e-6
chr14	20476796	20476893	14171380	0	+	0.474227	(0.455,0.49]	chr14	1109155	3	UTR3	UTR3:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	5.16215	5.6447	6.12725	5.04348e-5	1.23635e-7	0.00113788	6.7072e-6
chr22	49449010	49449110	18542354	0	-	0.42	(0.39,0.42]	chr22	1583944	74	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	78	2	4.49485	5.644629999999999	6.79441	1.93637e-6	7.63029e-11	6.9799e-5	1.17188e-8
chr7	11542031	11542131	8680041	0	-	0.36	(0.33,0.36]	chr7	663862	4	SS3_PROX	SS3_PROX:INTRON	THSD7A	ENSG00000005108.16	ENST00000423059.9:ENST00000617773.1:ENST00000497575.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.6856	5.64362	6.60164	3.92435e-4	1.09692e-9	0.00583618	1.13492e-7
chr7	103565459	103565551	8963930	0	-	0.456522	(0.455,0.49]	chr7	686214	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.76048	5.64353	6.52658	3.99985e-4	4.72215e-9	0.00588767	4.04884e-7
chrX	77857356	77857426	19129268	0	-	0.528571	(0.49,0.53]	chrX	1626890	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	4.83985	5.64307	6.44629	1.50325e-7	8.18066e-9	7.97048e-6	7.15844e-7
chr9	91730991	91731073	10733100	0	-	0.682927	(0.59,1]	chr9	811981	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	4.7151	5.642995	6.57089	0.00412279	4.62351e-7	0.0325842	2.06661e-5
chr11	119100629	119100703	12626657	0	-	0.581081	(0.53,0.59]	chr11	979868	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1:ENST00000460183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	122	2	4.57862	5.642469999999999	6.70632	2.22391e-8	2.74292e-9	1.54405e-6	2.75444e-7
chr15	34489099	34489197	15205565	0	-	0.561224	(0.53,0.59]	chr15	1197044	2	EXON_PSEUDO	EXON_PSEUDO	HNRNPLP2	ENSG00000259917.1	ENST00000568980.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	68	2	4.5586	5.642305	6.72601	0.00161229	2.47831e-9	0.0169168	2.32242e-7
chr11	90283318	90283412	12059332	0	+	0.457447	(0.455,0.49]	chr11	929980	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	112	2	3.9525	5.64213	7.33176	2.64659e-6	2.23332e-12	9.98197e-5	4.62988e-10
chr15	88899655	88899733	15434283	0	-	0.538462	(0.53,0.59]	chr15	1220386	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	114	2	3.87884	5.642095	7.40535	1.11478e-4	4.97868e-12	0.00213212	9.3677e-10
chr1	161000630	161000703	1331456	0	-	0.520548	(0.49,0.53]	chr1	136451	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1:ENST00000335772.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	242	2	4.49928	5.642055	6.78483	1.84669e-9	1e-12	1.95105e-7	2.25522e-10
chr1	197222785	197222879	643086	0	+	0.414894	(0.39,0.42]	chr1	64783	7	EXON_PSEUDO	EXON_PSEUDO	RP11-332L8.1	ENSG00000237861.1	ENST00000417716.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	55	2	4.77106	5.64079	6.51052	3.03764e-4	4.78431e-9	0.00472028	4.08907e-7
chr6	43512760	43512817	7707995	0	-	0.596491	(0.59,1]	chr6	591420	1	CDS	CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6:ENST00000512713.5:ENST00000455768.6:ENST00000416380.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.07453	5.640305	6.20608	0.00117617	4.1102e-6	0.0132131	1.31763e-4
chr5	67037231	67037331	6012085	0	+	0.45	(0.42,0.455]	chr5	470756	318	INTRON	INTRON	MAST4	ENSG00000069020.18	ENST00000403625.6:ENST00000490016.6:ENST00000403666.5:ENST00000405643.5:ENST00000432426.5:ENST00000261569.11:ENST00000436277.5:ENST00000447738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.80064	5.639415	6.47819	3.0479e-4	8.14533e-9	0.00472028	6.49842e-7
chr7	29071772	29071838	8745010	0	-	0.454545	(0.42,0.455]	chr7	667267	1	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6:ENST00000448959.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.80064	5.639415	6.47819	3.0479e-4	8.14533e-9	0.00472028	6.49842e-7
chr15	72353067	72353158	15369532	0	-	0.549451	(0.53,0.59]	chr15	1214457	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	123	2	4.17197	5.638635	7.1053	5.8915e-7	8.57402e-11	2.82242e-5	1.18534e-8
chr2	96877965	96878042	2792373	0	-	0.662338	(0.59,1]	chr2	249288	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	38	4093	2	5.41252	5.6378900000000005	5.86326	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	32997144	32997244	4110939	0	-	0.56	(0.53,0.59]	chr3	343426	1	CDS	CDS:EXON_MRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	5.43197	5.637645	5.84332	1.90853e-6	1.3341e-9	7.59317e-5	1.35579e-7
chr4	14933145	14933244	5321820	0	-	0.323232	(0.29,0.33]	chr4	428311	220	INTRON	INTRON	CPEB2-DT	ENSG00000247624.6	ENST00000500394.6	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	5.31775	5.637565	5.95738	1.06766e-5	2.05428e-7	3.17854e-4	1.04036e-5
chrX	154778683	154778781	19279802	0	-	0.357143	(0.33,0.36]	chrX	1638724	1	UTR3	UTR3:EXON_MRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000482757.1:ENST00000439370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	159	2	5.50035	5.637245	5.77414	2.20673e-10	1e-12	3.0384e-8	2.25522e-10
chr1	55058122	55058209	203788	0	+	0.678161	(0.59,1]	chr1	26156	2	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	363	2	4.7928	5.637169999999999	6.48154	4.27924e-8	5.03353e-12	2.98238e-6	9.4516e-10
chr3	50695694	50695794	3466962	0	+	0.56	(0.53,0.59]	chr3	303281	200	INTRON	INTRON	DOCK3	ENSG00000088538.13	ENST00000266037.10	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.95825	5.63688	6.31551	2.87508e-4	6.83735e-8	0.00457439	4.03413e-6
chr21	8210096	8210195	18041118	0	+	0.525253	(0.49,0.53]	chr21	1530812	8	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	1637	80602	2	5.47959	5.636365	5.79314	3.10862e-12	1e-12	6.19031e-10	2.46312e-10
chr11	2390468	2390526	11764907	0	+	0.568965	(0.53,0.59]	chr11	900155	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000493525.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000530239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	5.02047	5.636265	6.25206	1.05059e-7	4.49833e-8	6.55238e-6	2.80849e-6
chr5	132193009	132193080	6833451	0	-	0.450704	(0.42,0.455]	chr5	522668	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000474628.1:ENST00000428369.6:ENST00000506807.1:ENST00000467587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	5.55702	5.635645	5.71427	7.30994e-6	1.33053e-6	2.13219e-4	5.6008e-5
chr9	76398994	76399092	10312898	0	+	0.591837	(0.59,1]	chr9	776488	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP9	ENSG00000234618.1	ENST00000418207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	133	2	4.42593	5.634405	6.84288	1.38583e-5	7.98778e-8	3.94563e-4	4.61179e-6
chr4	89054238	89054337	5526400	0	-	0.434343	(0.42,0.455]	chr4	442510	242	INTRON	INTRON	FAM13A	ENSG00000138640.15	ENST00000264344.10:ENST00000511976.5:ENST00000502459.5:ENST00000512339.5:ENST00000509094.5:ENST00000515600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	5.28783	5.633775	5.97972	2.17539e-5	4.13864e-7	5.73422e-4	1.88179e-5
chr17	44014500	44014537	16555949	0	-	0.540541	(0.53,0.59]	chr17	1358828	1	CDS	CDS:UTR5:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8:ENST00000587529.1:ENST00000585950.5:ENST00000592127.5:ENST00000590905.1:ENST00000586174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.52168	5.63363	5.74558	1.48967e-5	3.61407e-6	3.81697e-4	1.29307e-4
chr10	74107229	74107291	11117532	0	+	0.548387	(0.53,0.59]	chr10	846281	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.52766	5.633615	5.73957	1.38993e-5	3.90343e-6	3.94563e-4	1.26306e-4
chr3	10304025	10304098	4032318	0	-	0.534247	(0.53,0.59]	chr3	338581	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000476597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	5.52766	5.633615	5.73957	1.38993e-5	3.90343e-6	3.94563e-4	1.26306e-4
chr11	62359033	62359133	11972958	0	+	0.42	(0.39,0.42]	chr11	917710	15	INTRON	INTRON	ASRGL1	ENSG00000162174.12	ENST00000415229.6:ENST00000534183.5:ENST00000301776.9:ENST00000529226.3:ENST00000628829.2:ENST00000528206.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.89218	5.63339	6.3746	1.6518e-4	1.52204e-8	0.0029267300000000002	1.11346e-6
chr5	140568622	140568717	6255392	0	+	0.494737	(0.49,0.53]	chr5	487697	6	UTR3	UTR3:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.39399	5.632949999999999	5.87191	1.71804e-5	9.67449e-7	4.72485e-4	3.88631e-5
chr8	108248702	108248802	10002791	0	-	0.46	(0.455,0.49]	chr8	754234	1	UTR5	UTR5:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	345	2	3.65703	5.632944999999999	7.60886	1.41541e-7	1e-12	8.45411e-6	2.25522e-10
chr11	763343	763431	11758788	0	+	0.636364	(0.59,1]	chr11	898429	1	CDS	CDS:UTR3:EXON_MRNA	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	573	2	4.60171	5.632524999999999	6.66334	3.21069e-10	2.1958e-12	3.83877e-8	4.90527e-10
chr2	239150259	239150357	3242101	0	-	0.367347	(0.36,0.39]	chr2	285860	52	INTRON	INTRON	HDAC4	ENSG00000068024.17	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000461113.5:ENST00000553145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	5.0302	5.631869999999999	6.23354	1.15931e-4	1.1274e-8	0.00204552	9.43067e-7
chr1	38709812	38709910	144547	0	+	0.408163	(0.39,0.42]	chr1	18021	10	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	108	2	3.66467	5.630955	7.59724	3.60066e-4	1e-12	0.00544157	2.25522e-10
chr16	23596122	23596190	15895492	0	-	0.705882	(0.59,1]	chr16	1272313	1	CDS	CDS:EXON_MRNA	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.4627	5.63012	5.79754	2.43542e-4	3.712e-5	0.00399705	8.06532e-4
chr17	28553661	28553754	16485692	0	-	0.602151	(0.59,1]	chr17	1347682	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	175	2	3.96462	5.629855	7.29509	7.67763e-6	6.79037e-9	2.20857e-4	6.0664e-7
chr1	91712242	91712342	1164290	0	-	0.5	(0.49,0.53]	chr1	114910	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000470600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.08061	5.629835	6.17906	1.00361e-4	1.01082e-7	0.00196575	5.6272e-6
chr2	219270201	219270268	2392971	0	+	0.507463	(0.49,0.53]	chr2	215536	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TUBA4B	ENSG00000243910.8	ENST00000490341.3:ENST00000473885.5:ENST00000485041.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.08061	5.629835	6.17906	1.00361e-4	1.01082e-7	0.00196575	5.6272e-6
chr4	145375808	145375897	5146231	0	+	0.47191	(0.455,0.49]	chr4	416391	4	EXON_PSEUDO	EXON_PSEUDO	RTN3P1	ENSG00000251333.3	ENST00000536295.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	59	2	4.63978	5.629245	6.61871	6.94032e-4	2.11003e-9	0.00876781	2.02462e-7
chr16	3191936	3192035	15497138	0	+	0.545455	(0.53,0.59]	chr16	1228505	2	INTRON	INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	24	1334	2	5.24746	5.62782	6.00818	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	100354505	100354566	14788711	0	-	0.377049	(0.36,0.39]	chr14	1158728	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	108	2	3.74283	5.62774	7.51265	1.50915e-5	1e-12	4.23797e-4	2.25522e-10
chr11	82853176	82853272	12499388	0	-	0.458333	(0.455,0.49]	chr11	971456	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5:ENST00000533126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	4.76048	5.6274999999999995	6.49452	3.99985e-4	6.22217e-9	0.00588767	5.13192e-7
chrX	48462897	48462966	19062784	0	-	0.507246	(0.49,0.53]	chrX	1620409	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	110	2	4.64712	5.62696	6.6068	9.47129e-9	2.01858e-9	7.4222e-7	2.10919e-7
chr8	99891921	99892021	9970736	0	-	0.56	(0.53,0.59]	chr8	752100	1	CDS_START	CDS_START:CDS:EXON_MRNA	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5:ENST00000518171.5:ENST00000523016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	240	2	4.53525	5.62655	6.71785	3.21237e-8	1e-12	2.1166e-6	2.46312e-10
chr5	168616719	168616811	6369408	0	+	0.565217	(0.53,0.59]	chr5	494770	5	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	102	2	4.14645	5.625875	7.1053	2.32261e-5	8.57402e-11	6.06413e-4	1.18534e-8
chr17	61069770	61069870	16304042	0	+	0.45	(0.42,0.455]	chr17	1322404	285	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000592827.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	4.40276	5.625355	6.84795	0.0017618	3.06905e-10	0.0180053	3.68838e-8
chrX	119243150	119243154	18840469	0	+	0.25	[0,0.29]	chrX	1605477	1	CDS	CDS:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.20404	5.625145	6.04625	2.26341e-5	8.77142e-8	5.9266e-4	4.99623e-6
chr11	62882907	62882999	11974429	0	+	0.554348	(0.53,0.59]	chr11	918049	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	568	2	4.9001	5.62505	6.35	6.77813e-12	1e-12	1.34323e-9	2.25522e-10
chr6	52403985	52404081	7177650	0	+	0.541667	(0.53,0.59]	chr6	555098	8	CDS	CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.86823	5.625014999999999	6.3818	4.35895e-4	4.09818e-8	0.00623608	2.59819e-6
chrX	154434294	154434370	18917896	0	+	0.565789	(0.53,0.59]	chrX	1611914	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	296	2	5.42277	5.624969999999999	5.82717	1.40169e-9	1e-12	1.52885e-7	2.25522e-10
chr11	71435474	71435565	12444401	0	-	0.648352	(0.59,1]	chr11	966972	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	346	2	5.18516	5.624795	6.06443	1.65293e-9	2.40594e-10	1.6405e-7	3.2867e-8
chr12	7819544	7819583	13192406	0	-	0.487179	(0.455,0.49]	chr12	1033388	1	CDS	CDS:UTR5:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	4.33565	5.62465	6.91365	5.69287e-6	1.41062e-10	1.88744e-4	1.83836e-8
chr17	81846946	81846984	16709530	0	-	0.526316	(0.49,0.53]	chr17	1377689	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	198	2	5.18879	5.623965	6.05914	1.86307e-7	1e-12	1.07114e-5	2.25522e-10
chr19	41956845	41956934	17570727	0	-	0.640449	(0.59,1]	chr19	1477228	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABAC1:CTD-2575K13.8	ENSG00000105404.11:ENSG00000285505.1	ENST00000601891.5:ENST00000600292.5:ENST00000598057.1:ENST00000222008.11:ENST00000601028.1:ENST00000595226.1:ENST00000601078.5:ENST00000644613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	80	2	4.63106	5.62364	6.61622	0.00537945	3.47582e-7	0.0406564	1.62117e-5
chr6	44253791	44253888	7161630	0	+	0.257732	[0,0.29]	chr6	553873	3	UTR3	UTR3:EXON_MRNA	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	4.28973	5.623105	6.95648	4.24282e-7	1.82686e-11	2.14164e-5	2.98529e-9
chr6	149378502	149378590	7480748	0	+	0.420455	(0.42,0.455]	chr6	571630	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	4.93872	5.622475	6.30623	5.07972e-8	3.37116e-8	3.4372e-6	2.19621e-6
chr12	49129499	49129520	13323986	0	-	0.47619	(0.455,0.49]	chr12	1045751	1	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000549870.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	4.53876	5.622035	6.70531	1.31171e-6	9.72532e-10	5.53834e-5	1.02291e-7
chr3	38142250	38142346	3419199	0	+	0.489583	(0.455,0.49]	chr3	297125	11	UTR3	UTR3:EXON_MRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000484513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	5.61055	5.621935000000001	5.63332	4.15159e-6	3.16146e-6	1.32627e-4	1.16228e-4
chr19	1496368	1496453	17193656	0	+	0.647059	(0.59,1]	chr19	1412289	2	CDS	CDS:EXON_MRNA	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	4.86977	5.6218	6.37383	0.00246014	1.54311e-6	0.0230058	5.75816e-5
chr1	25385777	25385844	904026	0	-	0.537313	(0.53,0.59]	chr1	94014	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	5.26337	5.620955	5.97854	7.61837e-7	5.87687e-9	3.51585e-5	4.91687e-7
chr12	3211747	3211832	13174255	0	-	0.411765	(0.39,0.42]	chr12	1030788	2	EXON_PSEUDO	EXON_PSEUDO	RP11-543P15.1	ENSG00000227081.5	ENST00000495392.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	112	2	4.10882	5.620889999999999	7.13296	6.44693e-8	1.40695e-11	4.24256e-6	2.36218e-9
chr15	58869559	58869658	14957485	0	+	0.484848	(0.455,0.49]	chr15	1175566	39	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	5.34116	5.620845	5.90053	4.02654e-7	1.84338e-9	2.05231e-5	1.80197e-7
chr19	44908885	44908973	17349677	0	+	0.784091	(0.59,1]	chr19	1439242	5	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000446996.5:ENST00000252486.9:ENST00000434152.5:ENST00000425718.1	protein_coding	protein_coding	protein_coding	protein_coding	5	486	2	5.09734	5.618015	6.13869	8.84655e-11	7.98062e-11	1.34582e-8	1.11729e-8
chr19	8486137	8486226	17220832	0	+	0.730337	(0.59,1]	chr19	1417692	7	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000597270.1:ENST00000597081.1:ENST00000596295.1:ENST00000598999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.28284	5.617755000000001	5.95267	4.04404e-4	2.38682e-5	0.00550292	6.18922e-4
chr11	62888100	62888169	11974491	0	+	0.463768	(0.455,0.49]	chr11	918076	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000542922.5:ENST00000539507.1:ENST00000542793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	182	2	4.89847	5.61682	6.33517	6.58625e-10	1e-12	7.94279e-8	2.25522e-10
chr20	45907840	45907904	17987733	0	-	0.515625	(0.49,0.53]	chr20	1524217	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.4156	5.616815000000001	5.81803	1.84143e-5	1.08721e-6	4.53637e-4	4.73591e-5
chr11	61313567	61313636	12404033	0	-	0.478261	(0.455,0.49]	chr11	960216	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	80	2	4.58536	5.616759999999999	6.64816	9.22269e-7	1.62448e-9	4.12764e-5	1.61468e-7
chr11	16809315	16809415	12292938	0	-	0.57	(0.53,0.59]	chr11	950190	17	INTRON	INTRON	PLEKHA7	ENSG00000166689.16	ENST00000531066.6:ENST00000637162.1:ENST00000355661.7:ENST00000530489.5:ENST00000636113.1:ENST00000525781.5:ENST00000532079.1:ENST00000525581.2:ENST00000525049.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	4.5586	5.616325	6.67405	0.00161229	3.84457e-9	0.0169168	3.39055e-7
chr13	91350604	91350688	13817783	0	+	0.428571	(0.42,0.455]	chr13	1086066	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA:SS5_PROX:PRIMIRNA:INTRON	MIR17HG:MIR17:MIR18A:MIR19A:MIR20A	ENSG00000215417.13:ENSG00000284536.1:ENSG00000283815.1:ENSG00000284204.1:ENSG00000283762.1	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000385012.1:ENST00000362310.3:ENST00000384878.1:ENST00000362279.1	miRNA	miRNA	miRNA:lncRNA	miRNA:retained_intron:lncRNA:primary_miRNA	1	98	2	5.51675	5.615265	5.71378	5.14372e-6	5.53809e-11	1.73456e-4	8.03719e-9
chr17	7587451	7587551	16105800	0	+	0.57	(0.53,0.59]	chr17	1297036	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	93	2	4.53023	5.615245	6.70026	1.83321e-6	3.08274e-9	7.37353e-5	2.80081e-7
chr6	122447120	122447192	7923754	0	-	0.388889	(0.36,0.39]	chr6	606814	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	4.76884	5.614520000000001	6.4602	1.37652e-9	1.11226e-10	1.50612e-7	1.48962e-8
chr10	27088320	27088373	11423140	0	-	0.415094	(0.39,0.42]	chr10	870853	1	EXON_SMALL	EXON_SMALL:INTRON	ANKRD26:RNU6-490P	ENSG00000107890.17:ENSG00000199855.1	ENST00000376087.5:ENST00000436985.7:ENST00000676420.1:ENST00000676232.1:ENST00000675187.1:ENST00000675846.1:ENST00000674697.1:ENST00000676361.1:ENST00000676299.1:ENST00000362985.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:nonsense_mediated_decay	2	142	2	5.53713	5.61301	5.68889	3.48373e-6	1e-12	1.26023e-4	2.25522e-10
chr6	109377899	109377971	7886764	0	-	0.430556	(0.42,0.455]	chr6	603709	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	281	2	5.4399	5.61293	5.78596	1.86851e-12	1e-12	4.26536e-10	2.25522e-10
chr1	21836801	21836869	890767	0	-	0.661765	(0.59,1]	chr1	92288	1	CDS	CDS:EXON_MRNA:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	130	2	4.63181	5.612775	6.59374	4.23414e-6	4.0058e-7	1.4819e-4	1.83141e-5
chr17	5545514	5545614	16422547	0	-	0.48	(0.455,0.49]	chr17	1338400	31	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000572272.6:ENST00000571451.6:ENST00000269280.8:ENST00000619223.4:ENST00000617618.4:ENST00000345221.7:ENST00000354411.7:ENST00000577119.5:ENST00000571307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.6621	5.612495	6.56289	7.84472e-4	1.63015e-9	0.00927662	1.75151e-7
chr15	65571600	65571654	14980106	0	+	0.5	(0.49,0.53]	chr15	1177590	2	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	5.16506	5.6121	6.05914	1.86307e-7	9.90322e-9	1.07114e-5	7.695e-7
chr19	48384229	48384313	17601681	0	-	0.511905	(0.49,0.53]	chr19	1482715	1	CDS	CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5:ENST00000600980.1	protein_coding	protein_coding	protein_coding	protein_coding	4	242	2	5.45163	5.611879999999999	5.77213	2.73548e-12	1e-12	5.98291e-10	2.25522e-10
chr1	212407125	212407225	1481741	0	-	0.52	(0.49,0.53]	chr1	149544	190	INTRON	INTRON	PACC1	ENSG00000065600.13	ENST00000261455.9:ENST00000535273.2:ENST00000467822.5:ENST00000471937.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.79086	5.611505	6.43215	4.20783e-4	1.33302e-8	0.00611538	9.93516e-7
chr17	78223657	78223755	16368061	0	+	0.44898	(0.42,0.455]	chr17	1329653	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	5.28783	5.610505	5.93318	2.17539e-5	5.79703e-7	5.73422e-4	2.50873e-5
chr1	160355862	160355958	496786	0	+	0.59375	(0.59,1]	chr1	53497	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000459963.5:ENST00000435149.1:ENST00000491390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.49184	5.610115	5.72839	1.61513e-4	7.24021e-5	0.00265627	0.0015254
chr12	63823302	63823401	12916679	0	+	0.575758	(0.53,0.59]	chr12	1006815	14	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	110	2	3.87884	5.6095	7.34016	1.11478e-4	9.3564e-12	0.00213212	1.63377e-9
chrX	26748703	26748800	18623789	0	+	0.608247	(0.59,1]	chrX	1590347	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	VENTXP1:HMGA1P1	ENSG00000259849.2:ENSG00000236683.3	ENST00000674719.1:ENST00000415560.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	2	173	2	4.54509	5.609195	6.6733	4.04492e-7	1.76874e-7	2.05866e-5	9.15009e-6
chr5	139308236	139308327	6248870	0	+	0.395604	(0.39,0.42]	chr5	486959	9	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	5.13089	5.608715	6.08654	5.44086e-8	1.17016e-8	3.65504e-6	8.85759e-7
chr7	105112951	105113045	8449887	0	+	0.510638	(0.49,0.53]	chr7	645366	13	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	4.85113	5.60769	6.36425	1.24602e-7	2.32873e-8	7.5922e-6	1.60638e-6
chr1	9556700	9556800	34238	0	+	0.41	(0.39,0.42]	chr1	3955	25	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	5.29502	5.6061250000000005	5.91723	1.68146e-5	5.41457e-7	4.64895e-4	2.37407e-5
chr7	133035907	133035987	9078016	0	-	0.5125	(0.49,0.53]	chr7	693068	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	CHCHD3:RP11-371A22.1	ENSG00000106554.13:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000634247.1:ENST00000457942.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	13	715	2	5.42709	5.60588	5.78467	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62888330	62888417	11974494	0	+	0.632184	(0.59,1]	chr11	918078	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000542922.5:ENST00000539507.1:ENST00000542793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	425	2	5.40488	5.605245	5.80561	1.66423e-9	2.3029e-11	1.7808e-7	3.67036e-9
chr10	73444052	73444143	11572000	0	-	0.384615	(0.36,0.39]	chr10	880980	4	UTR3	UTR3:EXON_MRNA:INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.30023	5.605119999999999	5.91001	1.38946e-5	4.5726e-7	3.94563e-4	2.05025e-5
chr2	27216522	27216620	1691465	0	+	0.459184	(0.455,0.49]	chr2	165631	1	CDS	CDS:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000405489.7:ENST00000472515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	4.78612	5.604855000000001	6.42359	2.17075e-7	5.69021e-9	1.0861e-5	5.19009e-7
chr19	14564785	14564858	17243464	0	+	0.547945	(0.53,0.59]	chr19	1422054	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	213	2	4.99718	5.604480000000001	6.21178	5.10337e-10	1e-12	6.34875e-8	2.25522e-10
chr12	57060771	57060858	13353783	0	-	0.448276	(0.42,0.455]	chr12	1052219	1	CDS	CDS:UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	5.49428	5.6042749999999995	5.71427	1.07978e-5	1.33053e-6	2.9314e-4	5.6008e-5
chr1	21861556	21861656	891059	0	-	0.51	(0.49,0.53]	chr1	92436	4	SS5_PROX	SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.99034	5.604195	6.21805	1.6002e-4	7.46967e-8	0.00286408	4.33833e-6
chr18	49492457	49492508	17119643	0	-	0.509804	(0.49,0.53]	chr18	1405609	1	UTR5	UTR5:EXON_MRNA	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000332968.11:ENST00000618619.4:ENST00000580261.6:ENST00000581373.5:ENST00000617346.4:ENST00000583036.5:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	821	2	5.17833	5.60394	6.02955	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	45909941	45910006	17987756	0	-	0.538462	(0.53,0.59]	chr20	1524227	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.46164	5.60361	5.74558	2.11519e-5	3.61407e-6	5.06522e-4	1.29307e-4
chrX	48524005	48524072	18691806	0	+	0.492537	(0.49,0.53]	chrX	1594131	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	220	2	5.13438	5.6031949999999995	6.07201	1.12849e-8	1e-12	9.4322e-7	2.25522e-10
chr19	43769437	43769537	17580570	0	-	0.57	(0.53,0.59]	chr19	1479100	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000648053.1:ENST00000598836.1:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	160	2	3.39827	5.6022549999999995	7.80624	1.84711e-5	1e-12	5.02409e-4	2.25522e-10
chr11	57414614	57414672	12394503	0	-	0.482759	(0.455,0.49]	chr11	958647	1	CDS	CDS:EXON_MRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	5.4037	5.6018550000000005	5.80001	1.20695e-5	1.35407e-6	3.52389e-4	5.16241e-5
chr17	44351099	44351163	16234920	0	+	0.578125	(0.53,0.59]	chr17	1314575	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1:ENST00000586443.1:ENST00000589923.1:ENST00000585348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	121	2	4.7209	5.6014	6.4819	1.75351e-8	6.47717e-9	1.37331e-6	5.30089e-7
chr12	55728275	55728341	13347109	0	-	0.515152	(0.49,0.53]	chr12	1050361	1	CDS_START	CDS_START:CDS:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000420846.7:ENST00000552692.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000552164.5:ENST00000551173.5:ENST00000546457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	5.0551	5.600215	6.14533	9.58343e-8	2.55273e-8	6.01659e-6	1.73844e-6
chr13	24105722	24105822	13641352	0	+	0.47	(0.455,0.49]	chr13	1075171	708	INTRON	INTRON	RP11-307N16.6:SPATA13	ENSG00000273167.1:ENSG00000182957.16	ENST00000382141.4:ENST00000424834.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	5.07172	5.599485	6.12725	8.3067e-5	1.23635e-7	0.00171126	6.7072e-6
chr3	141903619	141903649	3789958	0	+	0.333333	(0.33,0.36]	chr3	323462	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	5.39996	5.598635	5.79731	6.52649e-6	8.38679e-7	2.12073e-4	3.43427e-5
chr12	116662845	116662945	13105333	0	+	0.65	(0.59,1]	chr12	1022809	2	INTRON	INTRON	RP11-497G19.1	ENSG00000257883.1	ENST00000546835.1	lncRNA	lncRNA	lncRNA	lncRNA	0	73	2	4.7945	5.597245	6.39999	0.0031766	1.31939e-6	0.0279054	5.06228e-5
chr17	73224973	73225073	16673954	0	-	0.56	(0.53,0.59]	chr17	1371851	119	INTRON	INTRON	FAM104A	ENSG00000133193.12	ENST00000405159.7:ENST00000403627.7:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.399	5.59714	5.79528	3.02387e-5	2.61912e-6	6.78876e-4	9.89086e-5
chr12	120282633	120282716	13115829	0	+	0.409639	(0.39,0.42]	chr12	1023685	5	EXON_PSEUDO	EXON_PSEUDO	NME2P1	ENSG00000123009.4	ENST00000426182.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	50	2	4.89218	5.59685	6.30152	1.6518e-4	2.78542e-8	0.0029267300000000002	1.87494e-6
chr3	133803187	133803287	4461197	0	-	0.43	(0.42,0.455]	chr3	370792	11	INTRON	INTRON	RP11-404G16.8	ENSG00000285908.1	ENST00000650377.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	5.51675	5.595805	5.67486	5.14372e-6	3.42598e-6	1.73456e-4	1.12506e-4
chr1	96447524	96447623	366402	0	+	0.515152	(0.49,0.53]	chr1	35865	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	160	2	3.63867	5.59575	7.55283	1.87642e-7	1e-12	9.63683e-6	2.46312e-10
chr19	11120091	11120177	17230182	0	+	0.453488	(0.42,0.455]	chr19	1419607	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	106	2	4.80146	5.59559	6.38972	6.05141e-9	2.2181e-9	5.47413e-7	2.11138e-7
chr17	51171604	51171674	16266659	0	+	0.557143	(0.53,0.59]	chr17	1319625	1	UTR3	UTR3:EXON_MRNA	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000393190.4:ENST00000570801.1:ENST00000573262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	127	2	3.81779	5.595455	7.37312	7.68216e-6	6.80789e-12	2.4235e-4	1.23641e-9
chr1	32224033	32224081	127486	0	+	0.5	(0.49,0.53]	chr1	15788	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	5.48118	5.59511	5.70904	1.24248e-5	2.30382e-6	3.28918e-4	8.86852e-5
chr4	869957	870041	5276282	0	-	0.52381	(0.49,0.53]	chr4	424388	1	INTRON	INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	5.48118	5.59511	5.70904	1.24248e-5	2.30382e-6	3.28918e-4	8.86852e-5
chr19	46775609	46775678	17595461	0	-	0.565217	(0.53,0.59]	chr19	1481384	1	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	9	563	2	5.47772	5.594984999999999	5.71225	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	98649547	98649647	10765289	0	-	0.46	(0.455,0.49]	chr9	815064	420	INTRON	INTRON	GABBR2	ENSG00000136928.7	ENST00000259455.4:ENST00000637717.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.76048	5.59432	6.42816	3.99985e-4	1.09292e-8	0.00588767	8.34724e-7
chr1	21847764	21847840	890893	0	-	0.618421	(0.59,1]	chr1	92352	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	131	2	4.2703	5.593755	6.91721	3.25349e-5	4.85635e-8	7.97331e-4	3.00194e-6
chr3	32997044	32997144	4110938	0	-	0.47	(0.455,0.49]	chr3	343425	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.20189	5.59326	6.98463	0.00397662	7.15493e-11	0.0322851	1.01185e-8
chrX	48459803	48459876	19062742	0	-	0.643836	(0.59,1]	chrX	1620382	2	CDS	CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4:ENST00000480105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.03834	5.592535	6.14673	0.00108238	8.58437e-6	0.0118355	2.65793e-4
chr15	89155450	89155534	15093035	0	+	0.559524	(0.53,0.59]	chr15	1187057	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	143	2	3.80527	5.5922350000000005	7.3792	9.95548e-7	5.86153e-12	3.97538e-5	1.17723e-9
chr5	105383960	105384060	6743007	0	-	0.45	(0.42,0.455]	chr5	518593	1377	INTRON	INTRON	RP11-6N13.1	ENSG00000251574.8	ENST00000503650.1	lncRNA	lncRNA	lncRNA	lncRNA	1	78	2	4.79418	5.59195	6.38972	2.10099e-7	6.05141e-9	1.05955e-5	5.47413e-7
chr11	62633441	62633514	12409797	0	-	0.616438	(0.59,1]	chr11	961296	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000526732.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	619	2	5.18399	5.591905	5.99982	3.92122e-10	2.54874e-12	5.06516e-8	5.18187e-10
chr17	15239485	15239585	16454812	0	-	0.48	(0.455,0.49]	chr17	1343097	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PMP22	ENSG00000109099.16	ENST00000674673.1:ENST00000312280.9:ENST00000494511.7:ENST00000580584.3:ENST00000612492.5:ENST00000395938.7:ENST00000675854.1:ENST00000643451.2:ENST00000675819.1:ENST00000676329.1:ENST00000675551.1:ENST00000676221.1:ENST00000675950.1:ENST00000675808.1:ENST00000674871.1:ENST00000674651.1:ENST00000644020.1:ENST00000676161.1:ENST00000674707.1:ENST00000646419.2:ENST00000395936.7:ENST00000674947.1:ENST00000675197.1:ENST00000675350.1:ENST00000674868.1:ENST00000426385.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	5.57318	5.591865	5.61055	6.11867e-6	3.16146e-6	1.83393e-4	1.16228e-4
chr6	26285110	26285187	7647375	0	-	0.454545	(0.42,0.455]	chr6	582594	2	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1:ENST00000377727.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	241	2	5.16118	5.59145	6.02172	1.02018e-12	1e-12	2.50398e-10	2.25522e-10
chr2	235709934	235710033	2445679	0	+	0.242424	[0,0.29]	chr2	220934	3	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	5.54356	5.5910150000000005	5.63847	2.29995e-6	1.9181e-6	8.86852e-5	6.93031e-5
chr21	34095591	34095689	18104972	0	+	0.428571	(0.42,0.455]	chr21	1534981	4	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	101	2	4.4507	5.590945	6.73119	5.15044e-8	2.53502e-10	3.17024e-6	3.43829e-8
chr19	1990616	1990716	17420983	0	-	0.69	(0.59,1]	chr19	1453058	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD2	ENSG00000133243.10	ENST00000589685.2:ENST00000255608.9:ENST00000587825.1:ENST00000587225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	2808	2	4.28065	5.590275	6.8999	1.61988e-10	1e-12	2.31588e-8	2.25522e-10
chr5	168616811	168616903	6369409	0	+	0.478261	(0.455,0.49]	chr5	494770	6	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	406	2	4.46724	5.590015	6.71279	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	46198624	46198683	13313542	0	-	0.525424	(0.49,0.53]	chr12	1043486	1	CDS	CDS:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.46274	5.589975	5.71721	1.13094e-5	2.77472e-6	3.3464e-4	9.47025e-5
chr19	15141104	15141199	17484315	0	-	0.557895	(0.53,0.59]	chr19	1465096	1	EXON_PSEUDO	EXON_PSEUDO	OR10B1P	ENSG00000267961.2	ENST00000601666.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	64	2	4.5586	5.589370000000001	6.62014	0.00161229	6.02789e-9	0.0169168	5.00481e-7
chr4	143999410	143999449	5696317	0	-	0.487179	(0.455,0.49]	chr4	451478	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	4.71677	5.589245	6.46172	3.31178e-7	8.23018e-9	1.74638e-5	6.55711e-7
chr1	121009506	121009606	1258799	0	-	0.59	(0.53,0.59]	chr1	123336	11	INTRON	INTRON	PDE4DIPP4	ENSG00000275585.2	ENST00000612313.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	117	2	4.34742	5.58906	6.8307	1.5084e-7	9.38801e-10	7.98925e-6	1.08218e-7
chr2	70253854	70253932	2724291	0	-	0.384615	(0.36,0.39]	chr2	242720	1	EXON_PSEUDO	EXON_PSEUDO	RPL39P15	ENSG00000231414.1	ENST00000446011.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	75	2	4.30503	5.58861	6.87219	7.76959e-6	1.21908e-10	2.43892e-4	1.61717e-8
chr12	130875611	130875680	13154855	0	+	0.434783	(0.42,0.455]	chr12	1027982	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	138	2	5.24217	5.588514999999999	5.93486	3.28328e-9	5.86164e-12	3.2242e-7	1.08137e-9
chr5	168875780	168875880	6971397	0	-	0.49	(0.455,0.49]	chr5	533025	308	INTRON	INTRON	SLIT3	ENSG00000184347.15	ENST00000404867.7:ENST00000519560.6:ENST00000332966.8:ENST00000518140.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	4.36307	5.588155	6.81324	0.00218641	3.61927e-10	0.0208941	4.26011e-8
chr6	30722917	30722967	7112205	0	+	0.54	(0.53,0.59]	chr6	545060	1	CDS	CDS:UTR5:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	465	2	4.84181	5.588055	6.3343	1.23607e-11	1e-12	2.29494e-9	2.25522e-10
chr1	179918040	179918139	580803	0	+	0.363636	(0.36,0.39]	chr1	60265	7	CDS	CDS:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.98743	5.586655	6.18588	8.82225e-5	5.43608e-8	0.00178337	3.31855e-6
chr12	7929683	7929777	13193268	0	-	0.521277	(0.49,0.53]	chr12	1033507	1	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000479059.3:ENST00000490763.1:ENST00000495813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	182	2	5.24409	5.586155	5.92822	2.46315e-11	6.83531e-12	4.29454e-9	1.2401e-9
chr4	106927548	106927648	5579465	0	-	0.32	(0.29,0.33]	chr4	445580	12	INTRON	INTRON	DKK2	ENSG00000155011.9	ENST00000285311.8:ENST00000513208.5:ENST00000510534.1:ENST00000510463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.45534	5.585884999999999	6.71643	0.00110984	2.63785e-10	0.0127344	3.20997e-8
chr18	46087007	46087056	17103825	0	-	0.428571	(0.42,0.455]	chr18	1404358	1	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	132	2	5.45731	5.585789999999999	5.71427	1.33053e-6	3.09419e-12	5.6008e-5	6.17214e-10
chr15	89151764	89151852	15092997	0	+	0.522727	(0.49,0.53]	chr15	1187051	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	4.41931	5.5852699999999995	6.75123	3.4941e-6	5.44997e-10	1.14163e-4	6.72785e-8
chr8	128041070	128041168	9615217	0	+	0.387755	(0.36,0.39]	chr8	728683	8	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	5.20556	5.5850349999999995	5.96451	4.46552e-5	1.13061e-7	9.34801e-4	6.97642e-6
chr16	80637193	80637292	16049841	0	-	0.313131	(0.29,0.33]	chr16	1288950	36	INTRON	INTRON	CDYL2	ENSG00000166446.15	ENST00000570137.7:ENST00000562812.5:ENST00000563890.5:ENST00000566173.3:ENST00000561616.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.80322	5.58491	6.3666	2.14303e-4	6.82673e-9	0.00359478	5.56868e-7
chr17	4942850	4942941	16094312	0	+	0.527473	(0.49,0.53]	chr17	1294880	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000570492.5:ENST00000575400.5:ENST00000572554.1:ENST00000572382.5:ENST00000576965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.99034	5.5847	6.17906	1.6002e-4	1.01082e-7	0.00286408	5.6272e-6
chr8	97816118	97816180	9506859	0	+	0.403226	(0.39,0.42]	chr8	722750	2	CDS	CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	2	141	2	4.96127	5.58442	6.20757	3.99353e-8	1e-12	2.81235e-6	2.25522e-10
chr19	15834538	15834633	17246581	0	+	0.515789	(0.49,0.53]	chr19	1422763	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	10	488	2	4.85429	5.584355	6.31442	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	3514839	3514928	5285663	0	-	0.550562	(0.53,0.59]	chr4	425795	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.95825	5.58412	6.20999	2.87508e-4	1.51461e-7	0.00457439	8.00634e-6
chr10	21920877	21920957	11409823	0	-	0.45	(0.42,0.455]	chr10	869804	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000476103.3:ENST00000447548.5:ENST00000376946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.01562	5.583905	6.15219	1.01971e-4	1.13536e-7	0.0019861	6.23788e-6
chr6	29071920	29072017	7653060	0	-	0.453608	(0.42,0.455]	chr6	583269	2	EXON_PSEUDO	EXON_PSEUDO	OR2P1P	ENSG00000236909.1	ENST00000413771.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	49	2	5.01562	5.583905	6.15219	1.01971e-4	1.13536e-7	0.0019861	6.23788e-6
chr1	38710008	38710106	144549	0	+	0.428571	(0.42,0.455]	chr1	18021	12	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	85	2	3.8515	5.583425	7.31535	0.0119089	3.22586e-12	0.0686664	6.37646e-10
chr6	53267492	53267587	7740156	0	-	0.273684	[0,0.29]	chr6	594337	2	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.07045	5.583285	6.09612	5.08054e-5	5.83277e-8	0.00114377	3.51156e-6
chr1	109579203	109579282	399203	0	+	0.455696	(0.455,0.49]	chr1	38875	1	CDS	CDS:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.63978	5.5831800000000005	6.52658	6.94032e-4	4.72215e-9	0.00876781	4.04884e-7
chrX	79362635	79362691	19130531	0	-	0.517857	(0.49,0.53]	chrX	1627059	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5:ENST00000482194.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	5.24579	5.582895000000001	5.92	4.073e-5	6.89283e-7	9.64741e-4	2.91313e-5
chr1	201143890	201143951	1446582	0	-	0.540984	(0.53,0.59]	chr1	145197	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	207	2	5.24799	5.5825949999999995	5.9172	4.59777e-11	1.39236e-11	7.48519e-9	2.33881e-9
chrX	23837321	23837420	19005201	0	-	0.343434	(0.33,0.36]	chrX	1617170	1	INTRON	INTRON	APOO	ENSG00000184831.14	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	182	2	4.28343	5.5821749999999994	6.88092	2.5291e-7	1e-12	1.39126e-5	2.25522e-10
chrX	120455498	120455570	19196324	0	-	0.402778	(0.39,0.42]	chrX	1632009	3	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding	6	184	2	4.5312	5.580595000000001	6.62999	3.95245e-10	7.4305e-12	5.09605e-8	1.3349e-9
chr10	60793876	60793975	11063688	0	+	0.323232	(0.29,0.33]	chr10	841961	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.92491	5.579005	7.2331	6.01019e-6	1.25455e-12	1.97805e-4	2.7545e-10
chr7	139716913	139717013	9104845	0	-	0.47	(0.455,0.49]	chr7	694708	1	CDS_START	CDS_START:CDS:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.07172	5.57826	6.0848	8.3067e-5	1.71103e-7	0.00171126	8.87341e-6
chr5	151259835	151259916	6297906	0	+	0.567901	(0.53,0.59]	chr5	491670	2	CDS	CDS:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000523466.5:ENST00000357164.4:ENST00000523004.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.46762	5.577865	5.68811	1.97761e-5	5.40688e-6	5.29643e-4	1.64762e-4
chrX	155054869	155054968	18919147	0	+	0.50505	(0.49,0.53]	chrX	1612379	3	UTR3	UTR3:EXON_MRNA	FUNDC2	ENSG00000165775.18	ENST00000369498.8:ENST00000456179.1:ENST00000471528.1:ENST00000492303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.79086	5.577555	6.36425	4.20783e-4	2.32873e-8	0.00611538	1.60638e-6
chr1	40076821	40076913	954708	0	-	0.48913	(0.455,0.49]	chr1	100865	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1:ENST00000527311.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	109	2	4.96931	5.57747	6.18563	4.30535e-8	4.22699e-10	2.9886e-6	4.89428e-8
chr13	21628584	21628670	13928412	0	-	0.534884	(0.53,0.59]	chr13	1092751	3	EXON_PSEUDO	EXON_PSEUDO	RPS7P10	ENSG00000226525.5	ENST00000464254.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	51	2	5.27087	5.577335	5.8838	5.9416e-5	1.51824e-6	0.00130151	5.67784e-5
chr11	119097141	119097206	12626617	0	-	0.507692	(0.49,0.53]	chr11	979853	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	5.0153	5.57714	6.13898	1.37435e-7	3.17103e-8	7.34618e-6	2.29924e-6
chr19	5993752	5993851	17438683	0	-	0.535354	(0.53,0.59]	chr19	1456423	7	UTR3	UTR3:EXON_MRNA	RFX2	ENSG00000087903.13	ENST00000303657.10:ENST00000359161.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.77222	5.57701	6.3818	6.67251e-4	4.09818e-8	0.00867533	2.59819e-6
chr3	135056736	135056836	3758426	0	+	0.61	(0.59,1]	chr3	321607	783	INTRON	INTRON	EPHB1	ENSG00000154928.19	ENST00000398015.8:ENST00000482618.5:ENST00000647596.1:ENST00000488154.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.13679	5.576505	6.01622	9.28022e-4	1.18141e-5	0.0111748	3.14877e-4
chr1	43364391	43364460	968546	0	-	0.449275	(0.42,0.455]	chr1	102054	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	0	45	2	5.36824	5.57602	5.7838	1.33083e-5	1.6512e-6	3.81624e-4	6.0825e-5
chr6	30625599	30625697	7111731	0	+	0.571429	(0.53,0.59]	chr6	544930	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	90	2	4.53023	5.575185	6.62014	1.83321e-6	6.02789e-9	7.37353e-5	5.00481e-7
chr17	68530349	68530449	16337417	0	+	0.48	(0.455,0.49]	chr17	1325396	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5:ENST00000586541.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	5.4037	5.57513	5.74656	1.20695e-5	1.95355e-6	3.52389e-4	7.00948e-5
chr12	104757042	104757136	13062183	0	+	0.606383	(0.59,1]	chr12	1017752	2	CDS	CDS:EXON_MRNA	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.9413	5.57369	6.20608	0.00191468	4.1102e-6	0.0190905	1.31763e-4
chr19	38920729	38920810	17561721	0	-	0.432099	(0.42,0.455]	chr19	1475319	2	INTRON	INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.64624	5.573575	6.50091	8.75333e-4	2.22415e-9	0.0101169	2.28625e-7
chr6	43512266	43512315	7707987	0	-	0.653061	(0.59,1]	chr6	591414	1	CDS	CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.30893	5.572649999999999	5.83637	4.67312e-4	3.04631e-5	0.00661038	6.83179e-4
chr10	92351797	92351896	11191366	0	+	0.292929	(0.29,0.33]	chr10	850966	7	UTR3	UTR3:EXON_MRNA	MARCHF5	ENSG00000198060.10	ENST00000358935.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.21836	5.57244	5.92652	3.15783e-5	1.15466e-7	7.02218e-4	7.11016e-6
chr22	39017834	39017934	18368439	0	+	0.59	(0.53,0.59]	chr22	1562842	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.399	5.572290000000001	5.74558	3.02387e-5	3.61407e-6	6.78876e-4	1.29307e-4
chr20	1277756	1277856	17646616	0	+	0.52	(0.49,0.53]	chr20	1491668	106	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.27477	5.572175	5.86958	4.14521e-5	7.54524e-7	8.8376e-4	3.49213e-5
chr5	139478445	139478508	6867234	0	-	0.52381	(0.49,0.53]	chr5	525701	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000652293.1:ENST00000651565.1:ENST00000652640.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000502825.1:ENST00000515507.5:ENST00000511850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	5.32179	5.57198	5.82217	2.63311e-5	1.36598e-6	6.73425e-4	5.18684e-5
chr10	97433352	97433444	11212399	0	+	0.402174	(0.39,0.42]	chr10	852981	10	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.38032	5.5713799999999996	5.76244	9.82886e-6	1.61725e-6	2.98194e-4	5.98677e-5
chr14	100734333	100734425	14489604	0	+	0.695652	(0.59,1]	chr14	1132123	3	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	4	458	2	5.13058	5.570270000000001	6.00996	3.78065e-9	2.19169e-12	3.62902e-7	4.55756e-10
chr19	49499511	49499529	17370825	0	+	0.611111	(0.59,1]	chr19	1443166	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000270625.7:ENST00000594493.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	169	2	4.53137	5.5701149999999995	6.60886	6.00443e-7	1.94432e-7	2.85621e-5	9.92968e-6
chr1	219983328	219983398	1510821	0	-	0.414286	(0.39,0.42]	chr1	151004	3	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000485821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	84	2	5.46143	5.5699950000000005	5.67856	1.29189e-6	5.62612e-10	5.48279e-5	6.28917e-8
chr11	119051818	119051884	12626505	0	-	0.530303	(0.53,0.59]	chr11	979799	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	241	2	5.10854	5.56868	6.02882	2.12745e-8	1e-12	1.62119e-6	2.25522e-10
chr7	56078435	56078508	8290723	0	+	0.684932	(0.59,1]	chr7	631564	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.4627	5.568535	5.67437	2.43542e-4	6.83706e-5	0.00399705	0.00132577
chr8	15623164	15623249	9207363	0	+	0.447059	(0.42,0.455]	chr8	703398	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1:ENST00000509177.1:ENST00000511783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	5.11218	5.568495	6.0248100000000004	6.01815e-5	2.97136e-7	0.00130886	1.42027e-5
chr1	43363915	43364015	968539	0	-	0.53	(0.49,0.53]	chr1	102049	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	5.26724	5.56841	5.86958	7.54524e-7	4.01008e-9	3.49213e-5	3.51297e-7
chr10	125141747	125141847	11732927	0	-	0.51	(0.49,0.53]	chr10	895324	36	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	5.5439	5.56752	5.59114	8.44877e-6	5.02516e-6	2.39255e-4	1.7067e-4
chr19	10287535	10287608	17224667	0	+	0.561644	(0.53,0.59]	chr19	1418517	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.95825	5.565635	6.17302	2.87508e-4	1.98983e-7	0.00457439	1.01095e-5
chr1	19240371	19240446	877367	0	-	0.586667	(0.53,0.59]	chr1	90513	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000467423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	94	2	4.23022	5.565355	6.90049	1.38676e-5	5.07601e-10	3.5918e-4	6.32225e-8
chr19	582205	582305	17188329	0	+	0.64	(0.59,1]	chr19	1410781	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	140	2	3.86139	5.565215	7.26904	2.54973e-4	4.18004e-9	0.00417441	3.6495e-7
chr12	7149522	7149607	12717377	0	+	0.529412	(0.49,0.53]	chr12	987718	1	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000541770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.99034	5.56466	6.13898	1.6002e-4	1.37435e-7	0.00286408	7.34618e-6
chr16	571451	571547	15483057	0	+	0.552083	(0.53,0.59]	chr16	1224707	3	INTRON	INTRON	PIGQ:LA16c-407A10.3	ENSG00000007541.17:ENSG00000282907.1	ENST00000293874.2:ENST00000409527.6:ENST00000409439.6:ENST00000635107.1:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	50	2	5.33351	5.564395	5.79528	4.35359e-5	2.61912e-6	0.00091744700000000005	9.89086e-5
chr1	225839281	225839346	738239	0	+	0.569231	(0.53,0.59]	chr1	74423	2	CDS	CDS:EXON_MRNA	EPHX1	ENSG00000143819.13	ENST00000272167.10:ENST00000614058.4:ENST00000366837.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.33948	5.564375	5.78927	4.08763e-5	2.83401e-6	9.64741e-4	9.62519e-5
chr3	197950189	197950244	3992938	0	+	0.563636	(0.53,0.59]	chr3	336591	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000642148.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	42	2417	2	5.21009	5.564344999999999	5.9186	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	37350737	37350836	8779142	0	-	0.40404	(0.39,0.42]	chr7	669348	76	INTRON	INTRON	ELMO1	ENSG00000155849.16	ENST00000310758.9:ENST00000442504.5:ENST00000448602.5:ENST00000463390.1:ENST00000453399.5:ENST00000445322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.49324	5.563985000000001	6.63473	0.00108192	1.60065e-9	0.0124943	1.59782e-7
chr1	161505467	161505552	500392	0	+	0.470588	(0.455,0.49]	chr1	54209	1	CDS_START	CDS_START:CDS:EXON_MRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000473080.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000497474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	5.32759	5.5638000000000005	5.80001	1.92345e-5	1.35407e-6	5.18397e-4	5.16241e-5
chr3	39359725	39359823	3423606	0	+	0.479592	(0.455,0.49]	chr3	297918	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P24	ENSG00000223668.1	ENST00000451469.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	45	2	5.32759	5.5638000000000005	5.80001	1.92345e-5	1.35407e-6	5.18397e-4	5.16241e-5
chr12	49186389	49186470	13324032	0	-	0.518519	(0.49,0.53]	chr12	1045771	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1:ENST00000548363.1:ENST00000550254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	158	2	4.85113	5.562235	6.27334	1.24602e-7	1e-12	7.5922e-6	2.25522e-10
chr14	49583576	49583666	14613956	0	-	0.322222	(0.29,0.33]	chr14	1144047	1	UTR3	UTR3:EXON_MRNA:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	217	2	3.91448	5.56205	7.20962	9.95521e-8	1e-12	6.23127e-6	2.25522e-10
chr1	161672974	161673059	501559	0	+	0.611765	(0.59,1]	chr1	54362	1	CDS	CDS:EXON_MRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.00945	5.56186	6.11427	0.00149725	6.89731e-6	0.0159607	0.00020353099999999999
chr9	137184712	137184812	10893355	0	-	0.63	(0.59,1]	chr9	828455	4	SS5_PROX	SS5_PROX:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.03834	5.56162	6.0849	0.00108238	1.19649e-5	0.0118355	3.513e-4
chr13	99554303	99554379	13865568	0	+	0.5	(0.49,0.53]	chr13	1087219	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	5.39399	5.560874999999999	5.72776	1.71804e-5	5.17537e-11	4.72485e-4	7.56745e-9
chr7	100606415	100606486	8427998	0	+	0.549296	(0.53,0.59]	chr7	643264	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000486440.5:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	4.77222	5.560625	6.34903	6.67251e-4	5.2841e-8	0.00867533	3.2354e-6
chr5	177337443	177337524	6991103	0	-	0.604938	(0.59,1]	chr5	534735	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000502721.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	127	2	4.29743	5.560560000000001	6.82369	2.81132e-5	9.07221e-8	7.10133e-4	5.13369e-6
chr3	60526109	60526209	4225157	0	-	0.44	(0.42,0.455]	chr3	355981	4454	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.28782	5.560090000000001	5.83236	3.65299e-5	5.6476e-7	7.95843e-4	2.73442e-5
chr17	28558532	28558590	16485747	0	-	0.482759	(0.455,0.49]	chr17	1347697	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000484580.6:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	5.44482	5.559105000000001	5.67339	1.36044e-5	2.05982e-6	3.54469e-4	8.10246e-5
chr12	49075561	49075641	12864208	0	+	0.5	(0.49,0.53]	chr12	998977	1	EXON_PSEUDO	EXON_PSEUDO	RP11-386G11.11	ENSG00000277672.1	ENST00000611325.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	47	2	5.24579	5.55885	5.87191	4.073e-5	9.67449e-7	9.64741e-4	3.88631e-5
chr19	55386538	55386569	17396157	0	+	0.612903	(0.59,1]	chr19	1448669	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000431533.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000558752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	4.9413	5.55871	6.17612	0.00191468	4.87365e-6	0.0190905	1.51951e-4
chr1	1541770	1541868	827859	0	-	0.418367	(0.39,0.42]	chr1	82516	2	UTR3	UTR3:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	4.98043	5.5584299999999995	6.13643	4.28317e-8	3.57957e-8	2.69344e-6	2.56228e-6
chr19	28498520	28498620	17525800	0	-	0.27	[0,0.29]	chr19	1470946	51	INTRON	INTRON	AC005307.5:AC005307.4:AC005616.1	ENSG00000283403.1:ENSG00000267243.6:ENSG00000266893.1	ENST00000592347.5:ENST00000593065.5:ENST00000589999.1	lncRNA	lncRNA	lncRNA	lncRNA	3	90	2	3.497	5.55809	7.61918	9.67198e-6	1e-12	2.68661e-4	2.46312e-10
chr3	72929134	72929226	3555313	0	+	0.413043	(0.39,0.42]	chr3	308958	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	GXYLT2:FTH1P23	ENSG00000172986.13:ENSG00000242960.1	ENST00000389617.9:ENST00000498315.1:ENST00000492727.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	4	217	2	5.47072	5.55792	5.64512	3.08527e-10	1e-12	4.09162e-8	2.25522e-10
chrX	119786503	119786593	19192771	0	-	0.366667	(0.36,0.39]	chrX	1631593	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000477403.1:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	1275	2	5.524	5.5576550000000005	5.59131	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	48058294	48058389	16253358	0	+	0.557895	(0.53,0.59]	chr17	1317132	1	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000583210.5:ENST00000577411.5:ENST00000584634.5:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000577431.1:ENST00000580037.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.86823	5.557124999999999	6.24602	4.35895e-4	1.15746e-7	0.00623608	6.3314e-6
chr7	55646570	55646665	8289095	0	+	0.463158	(0.455,0.49]	chr7	631304	11	EXON_PSEUDO	EXON_PSEUDO	TUBBP6	ENSG00000235207.1	ENST00000416519.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	47	2	5.07172	5.556395	6.04107	8.3067e-5	2.38066e-7	0.00171126	1.17461e-5
chr11	57496030	57496097	12394794	0	-	0.522388	(0.49,0.53]	chr11	958768	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.89405	5.55605	6.21805	2.57983e-4	7.46967e-8	0.00419998	4.33833e-6
chr2	13922205	13922305	2518448	0	-	0.52	(0.49,0.53]	chr2	227217	802	INTRON	INTRON	LINC00276	ENSG00000230448.5	ENST00000417751.5	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.89405	5.55605	6.21805	2.57983e-4	7.46967e-8	0.00419998	4.33833e-6
chr21	34843199	34843299	18227296	0	-	0.38	(0.36,0.39]	chr21	1546914	82	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	111	2	5.33641	5.554494999999999	5.77258	1.60721e-9	1.10797e-11	1.60253e-7	2.09245e-9
chr1	154978031	154978131	482009	0	+	0.48	(0.455,0.49]	chr1	50163	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000368436.1:ENST00000477676.6:ENST00000474215.5:ENST00000473344.1:ENST00000471245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	4.51231	5.55401	6.59571	1.73754e-6	1.2059e-9	6.36428e-5	1.33979e-7
chr7	28995771	28995871	8744247	0	-	0.39	(0.36,0.39]	chr7	667242	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.0994	5.553675	6.00795	4.68763e-5	2.19402e-7	0.00107286	1.09601e-5
chr20	44501072	44501148	17982007	0	-	0.486842	(0.455,0.49]	chr20	1523372	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	4.0992	5.553364999999999	7.00753	2.73975e-5	5.73416e-11	6.95757e-4	8.29069e-9
chr1	21834678	21834767	890744	0	-	0.606742	(0.59,1]	chr1	92278	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	124	2	4.78875	5.55325	6.31775	3.32583e-6	1.30092e-6	1.2115e-4	5.00075e-5
chr14	67685109	67685204	14683424	0	-	0.505263	(0.49,0.53]	chr14	1149631	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000553582.5:ENST00000554493.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	138	2	5.50968	5.553100000000001	5.59652	3.51088e-10	1.86858e-10	4.5919e-8	2.36457e-8
chr1	156137653	156137708	486156	0	+	0.618182	(0.59,1]	chr1	51297	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000498722.3:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	149	2	5.50415	5.5529	5.60165	1.30928e-4	9.98032e-9	0.00243846	7.74456e-7
chr1	99740792	99740866	1197669	0	-	0.432432	(0.42,0.455]	chr1	116896	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	4.69393	5.552885	6.41184	3.8764e-7	1.42035e-8	1.99378e-5	1.0503e-6
chr2	231256306	231256395	2424829	0	+	0.539326	(0.53,0.59]	chr2	218487	1	SS3_PROX	SS3_PROX:INTRON	ARMC9	ENSG00000135931.19	ENST00000349938.8:ENST00000683165.1:ENST00000611582.5:ENST00000683275.1:ENST00000682002.1:ENST00000682334.1:ENST00000682027.1:ENST00000683271.1:ENST00000436339.6:ENST00000683702.1:ENST00000684011.1:ENST00000683107.1:ENST00000684432.1:ENST00000684565.1:ENST00000684051.1:ENST00000682100.1:ENST00000682367.1:ENST00000683063.1:ENST00000683112.1:ENST00000683814.1:ENST00000682233.1:ENST00000682030.1:ENST00000684718.1:ENST00000683321.1:ENST00000683040.1:ENST00000683966.1:ENST00000683553.1:ENST00000684368.1:ENST00000682264.1:ENST00000683575.1:ENST00000683629.1:ENST00000469789.2:ENST00000683520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	165	2	3.37174	5.55184	7.73194	5.64197e-6	1e-12	1.87384e-4	2.25522e-10
chr16	73478257	73478357	16022405	0	-	0.35	(0.33,0.36]	chr16	1286921	216	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2	protein_coding	protein_coding	protein_coding	protein_coding	45	1553	2	4.93816	5.55175	6.16534	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	26204956	26205054	7101593	0	+	0.5	(0.49,0.53]	chr6	542858	1	UTR3	UTR3:EXON_MRNA	H4C5	ENSG00000276966.2	ENST00000615164.2	protein_coding	protein_coding	protein_coding	protein_coding	6	265	2	4.80558	5.551635	6.29769	1.43463e-12	1e-12	3.40131e-10	2.25522e-10
chr5	65558105	65558204	6617193	0	-	0.282828	[0,0.29]	chr5	511404	28	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	154	2	4.68206	5.5506150000000005	6.41917	3.55672e-11	1e-12	5.98633e-9	2.25522e-10
chr4	48851892	48851992	4827454	0	+	0.39	(0.36,0.39]	chr4	397842	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000512981.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	202	2	5.10075	5.55056	6.00037	6.673e-11	1e-12	1.04093e-8	2.25522e-10
chr2	239915488	239915588	3244903	0	-	0.39	(0.36,0.39]	chr2	285963	21	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.5987	5.5501249999999995	6.50155	9.0208e-4	9.23305e-10	0.0102618	1.06844e-7
chr11	88309235	88309309	12533219	0	-	0.391892	(0.39,0.42]	chr11	972534	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000678065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	5.29289	5.55012	5.80735	4.99312e-7	2.72714e-9	2.4714e-5	2.53315e-7
chr6	70399281	70399349	7220389	0	+	0.338235	(0.33,0.36]	chr6	557281	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-462G2.1	ENSG00000237643.2	ENST00000671572.1:ENST00000418403.2:ENST00000667898.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	5.30286	5.550085	5.79731	1.23392e-5	8.38679e-7	3.58359e-4	3.43427e-5
chr17	68046768	68046854	16333855	0	+	0.360465	(0.36,0.39]	chr17	1325141	3	UTR3	UTR3:EXON_MRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	5.30023	5.5499	5.79957	1.38946e-5	1.61221e-11	3.94563e-4	2.67207e-9
chr11	61321594	61321645	12404122	0	-	0.470588	(0.455,0.49]	chr11	960234	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000537877.5:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	5.24724	5.549395	5.85155	3.09759e-5	9.4476e-7	7.62166e-4	3.80876e-5
chr8	100709132	100709223	9976002	0	-	0.527473	(0.49,0.53]	chr8	752672	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	1788	2	5.48915	5.54715	5.60515	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	13373795	13373873	4046794	0	-	0.589744	(0.53,0.59]	chr3	339666	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	5.40497	5.54654	5.68811	2.83308e-5	5.40688e-6	7.12614e-4	1.64762e-4
chr12	124807824	124807888	13600452	0	-	0.578125	(0.53,0.59]	chr12	1071710	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	5.45172	5.546225	5.64073	7.00135e-6	1.11728e-9	2.25852e-4	1.15291e-7
chr5	140528752	140528847	6255123	0	+	0.494737	(0.49,0.53]	chr5	487634	7	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	5.32179	5.546215	5.77064	2.63311e-5	1.94063e-6	6.73425e-4	6.9799e-5
chr13	27945259	27945337	13659430	0	+	0.512821	(0.49,0.53]	chr13	1076582	1	EXON_PSEUDO	EXON_PSEUDO	ATP5F1EP2	ENSG00000180389.7	ENST00000381026.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	48	2	5.08061	5.546115	6.01162	1.00361e-4	3.55916e-7	0.00196575	1.64926e-5
chr1	230236352	230236420	749357	0	+	0.441176	(0.42,0.455]	chr1	76023	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	5.11218	5.54595	5.97972	6.01815e-5	4.13864e-7	0.00130886	1.88179e-5
chr5	151266825	151266925	6297977	0	+	0.52	(0.49,0.53]	chr5	491677	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GM2A	ENSG00000196743.9	ENST00000523466.5:ENST00000357164.4:ENST00000523004.1	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.25722	5.545945	6.83467	1.00699e-5	3.95701e-10	3.03291e-4	4.60945e-8
chr4	86949935	86950024	5516773	0	-	0.617977	(0.59,1]	chr4	441809	4	EXON_PSEUDO	EXON_PSEUDO	TECRP1	ENSG00000235043.3	ENST00000513307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	124	2	4.5664	5.5452449999999995	6.52409	6.21388e-6	6.1879e-7	2.03021e-4	2.65084e-5
chr7	101216162	101216244	8953748	0	-	0.658537	(0.59,1]	chr7	684715	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000478082.5:ENST00000424135.5:ENST00000489927.1:ENST00000414785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	328	2	5.17297	5.545065	5.91716	2.76517e-9	4.51201e-10	2.77012e-7	5.17986e-8
chr1	21831269	21831324	890698	0	-	0.618182	(0.59,1]	chr1	92246	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	4.45031	5.544335	6.63836	1.2083e-5	3.02038e-7	3.52389e-4	1.44093e-5
chr1	150749994	150750094	1290257	0	-	0.44	(0.42,0.455]	chr1	128442	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	5.20268	5.54388	5.88508	3.59669e-5	8.1674e-7	8.71318e-4	3.36299e-5
chr15	43131589	43131686	14894427	0	+	0.443299	(0.42,0.455]	chr15	1170755	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	TMEM62:SPCS2P1	ENSG00000137842.7:ENSG00000260928.2	ENST00000564698.5:ENST00000561636.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	45	2	5.20268	5.54388	5.88508	3.59669e-5	8.1674e-7	8.71318e-4	3.36299e-5
chr1	36286908	36286999	141542	0	+	0.604396	(0.59,1]	chr1	17556	7	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.44236	5.543755	5.64515	2.02004e-4	1.07144e-4	0.00317801	0.00206452
chr17	83026974	83027073	16715079	0	-	0.656566	(0.59,1]	chr17	1378983	121	INTRON	INTRON	B3GNTL1	ENSG00000175711.8	ENST00000320865.3:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.44236	5.543755	5.64515	2.02004e-4	1.07144e-4	0.00317801	0.00206452
chr17	28467821	28467918	16175935	0	+	0.56701	(0.53,0.59]	chr17	1305136	1	EXON_PSEUDO	EXON_PSEUDO	RPS7P1	ENSG00000263266.2	ENST00000571702.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	89	2	4.4133	5.543675	6.67405	4.11992e-6	3.84457e-9	1.44702e-4	3.39055e-7
chr3	14141592	14141643	3319491	0	+	0.509804	(0.49,0.53]	chr3	292107	1	CDS	CDS:EXON_MRNA:INTRON	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	5.11868	5.543075	5.96747	9.66505e-5	3.70439e-7	0.00175267	1.92378e-5
chr5	32221931	32222014	5924506	0	+	0.518072	(0.49,0.53]	chr5	464144	1	EXON_PSEUDO	EXON_PSEUDO	CTD-2186M15.1	ENSG00000230829.3	ENST00000477507.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	47	2	5.16557	5.542785	5.92	6.36135e-5	6.89283e-7	0.00136069	2.91313e-5
chrX	40597526	40597564	18667542	0	+	0.421053	(0.42,0.455]	chrX	1591858	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000436783.6:ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637930.1:ENST00000479120.2:ENST00000637140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	5.01562	5.5420750000000005	6.06853	1.01971e-4	2.14495e-7	0.0019861	1.07721e-5
chr19	48329477	48329492	17365251	0	+	0.6	(0.59,1]	chr19	1441702	1	CDS	CDS:UTR3:EXON_MRNA	EMP3	ENSG00000142227.11	ENST00000596315.5:ENST00000594198.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1:ENST00000597057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.16576	5.541695	5.91763	6.55716e-4	2.85329e-5	0.0080931	7.16403e-4
chr19	18175310	18175385	17257687	0	+	0.493333	(0.49,0.53]	chr19	1425237	1	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	168	2	4.62576	5.541634999999999	6.45751	7.32131e-7	1e-12	3.41344e-5	2.25522e-10
chrX	30854693	30854790	19012421	0	-	0.515464	(0.49,0.53]	chrX	1617576	7	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	4.58452	5.540760000000001	6.497	9.98532e-7	7.74861e-9	4.42534e-5	6.22462e-7
chr1	224189854	224189947	728455	0	+	0.451613	(0.42,0.455]	chr1	73579	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	4.36452	5.54061	6.7167	9.38109e-8	1.01691e-9	5.9091e-6	1.0635e-7
chr7	5527651	5527747	8659474	0	-	0.385417	(0.36,0.39]	chr7	662109	14	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	874	2	4.79374	5.539705	6.28567	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	41348294	41348374	17568667	0	-	0.5875	(0.53,0.59]	chr19	1476905	1	CDS	CDS:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1:ENST00000597453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.86823	5.53911	6.20999	4.35895e-4	1.51461e-7	0.00623608	8.00634e-6
chr4	164188995	164189093	5204340	0	+	0.510204	(0.49,0.53]	chr4	420030	8	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	70	2	4.12263	5.5387900000000005	6.95495	0.00591451	1.29335e-10	0.0427941	1.69761e-8
chr11	60920885	60920936	11967035	0	+	0.529412	(0.49,0.53]	chr11	916460	1	CDS	CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.38192	5.53855	6.69518	0.00259709	9.10937e-10	0.0229695	1.0553e-7
chr4	41944792	41944859	4809390	0	+	0.402985	(0.39,0.42]	chr4	396940	1	CDS	CDS:UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6:ENST00000506794.1:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.89218	5.53831	6.18444	1.6518e-4	7.14249e-8	0.0029267300000000002	4.18382e-6
chr10	118932373	118932473	11716187	0	-	0.47	(0.455,0.49]	chr10	893737	599	INTRON	INTRON	RP11-498J9.2	ENSG00000229272.2	ENST00000663084.1	lncRNA	lncRNA	lncRNA	lncRNA	1	82	2	4.16204	5.537845	6.91365	1.83061e-5	1.41062e-10	4.99708e-4	1.83836e-8
chr15	79313922	79314005	15042954	0	+	0.554217	(0.53,0.59]	chr15	1183507	3	CDS	CDS:EXON_MRNA	TMED3	ENSG00000166557.14	ENST00000299705.10:ENST00000424155.6:ENST00000536821.5:ENST00000543455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	5.52766	5.537145000000001	5.54663	1.38993e-5	4.71653e-10	3.94563e-4	5.38983e-8
chr12	120211622	120211720	13579796	0	-	0.510204	(0.49,0.53]	chr12	1068824	13	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	103	2	4.11904	5.536995	6.95495	7.50378e-7	1.29335e-10	3.48685e-5	1.69761e-8
chr8	143992536	143992608	9649809	0	+	0.597222	(0.59,1]	chr8	731409	2	CDS	CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000534791.5:ENST00000533044.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	127	2	4.15635	5.53678	6.91721	5.93256e-5	4.85635e-8	0.00130151	3.00194e-6
chrX	79362580	79362635	19130530	0	-	0.418182	(0.39,0.42]	chrX	1627059	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5:ENST00000482194.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	5.10761	5.53648	5.96535	5.12039e-5	3.80804e-7	0.00114668	1.7481e-5
chr1	93847565	93847663	357441	0	+	0.581633	(0.53,0.59]	chr1	35271	5	EXON_LNCRNA	EXON_LNCRNA	RP4-561L24.3	ENSG00000260464.1	ENST00000565336.1	lncRNA	lncRNA	lncRNA	lncRNA	323	16700	2	5.31903	5.535715	5.7524	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	66255087	66255141	18718185	0	+	0.425926	(0.42,0.455]	chrX	1597048	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.80064	5.53494	6.26924	3.0479e-4	4.53551e-8	0.00472028	2.82715e-6
chr1	160354203	160354290	496766	0	+	0.528736	(0.49,0.53]	chr1	53487	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	4.96675	5.534815	6.10288	1.33258e-7	5.35448e-8	8.01671e-6	3.27447e-6
chr12	50929981	50930050	12875830	0	+	0.57971	(0.53,0.59]	chr12	1000528	2	CDS	CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	4.85231	5.534165	6.21602	1.71119e-7	1.37682e-7	8.87341e-6	8.24248e-6
chr6	75259346	75259418	7800364	0	-	0.416667	(0.39,0.42]	chr6	597658	1	CDS	CDS:UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.49324	5.533605	6.57397	0.00108192	2.74698e-9	0.0124943	2.54234e-7
chr12	63823500	63823598	12916681	0	+	0.489796	(0.455,0.49]	chr12	1006815	16	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	56	2	4.50805	5.5329999999999995	6.55795	0.00122223	3.59716e-9	0.0135383	3.19904e-7
chr15	99257929	99258028	15142841	0	+	0.353535	(0.33,0.36]	chr15	1190792	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	55	2	4.33896	5.53245	6.72594	0.00182033	3.40498e-10	0.0183913	4.0269e-8
chr5	124809070	124809151	6798015	0	-	0.555556	(0.53,0.59]	chr5	521005	4	EXON_PSEUDO	EXON_PSEUDO	RP11-436H11.1	ENSG00000242814.2	ENST00000464124.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	60	2	4.5586	5.532245	6.50589	0.00161229	1.53327e-8	0.0169168	1.12074e-6
chr16	23467190	23467290	15894375	0	-	0.49	(0.455,0.49]	chr16	1272095	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	5.16215	5.531734999999999	5.90132	5.04348e-5	6.63378e-7	0.00113788	2.82038e-5
chrX	78124873	78124962	18747139	0	+	0.550562	(0.53,0.59]	chrX	1599848	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	372	2	5.44986	5.531485	5.61311	6.12732e-12	1e-12	1.22707e-9	2.25522e-10
chr12	54231214	54231305	13342838	0	-	0.373626	(0.36,0.39]	chr12	1049600	4	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	0	41	2	5.20331	5.530875	5.85844	2.53222e-5	6.66729e-7	6.51851e-4	2.83187e-5
chr6	7338929	7339020	7587402	0	-	0.571429	(0.53,0.59]	chr6	578773	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	SSR1:CAGE1:RP11-69L16.5	ENSG00000124783.14:ENSG00000164304.16:ENSG00000220472.1	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8:ENST00000407940.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	87	2	4.88173	5.530395	6.17906	1.81157e-7	1.36047e-7	1.05195e-5	7.30332e-6
chr1	156309198	156309298	1314022	0	-	0.55	(0.53,0.59]	chr1	133400	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	113	2	4.49053	5.530365	6.5702	4.67404e-8	8.55645e-9	2.90468e-6	7.38823e-7
chr7	103635505	103635586	8964650	0	-	0.54321	(0.53,0.59]	chr7	686303	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1:ENST00000473457.2:ENST00000680712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	3.82407	5.530279999999999	7.23649	0.0179666	2.51675e-11	0.0918323	3.96232e-9
chr11	57407791	57407891	12394430	0	-	0.45	(0.42,0.455]	chr11	958629	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000528835.1:ENST00000395124.6:ENST00000395123.6:ENST00000625097.1:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	6	252	2	4.25295	5.5300650000000005	6.80718	4.02506e-10	1e-12	5.1737e-8	2.25522e-10
chr9	37885770	37885859	10257573	0	+	0.404494	(0.39,0.42]	chr9	772020	2	EXON_PSEUDO	EXON_PSEUDO	TMX2P1	ENSG00000213839.4	ENST00000436507.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	42	2	5.07852	5.529885	5.98125	1.02164e-4	1.28715e-7	0.00183311	7.78377e-6
chr17	66314817	66314917	16321838	0	+	0.34	(0.33,0.36]	chr17	1324464	83	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	5.25308	5.529755	5.80643	2.94355e-5	3.38594e-7	6.67979e-4	1.77741e-5
chr11	90283507	90283602	12059334	0	+	0.494737	(0.49,0.53]	chr11	929980	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	104	2	4.64712	5.529525	6.41193	1.09526e-8	9.47129e-9	9.21346e-7	7.4222e-7
chr22	21762844	21762944	18442379	0	-	0.46	(0.455,0.49]	chr22	1572508	33	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	10	401	2	4.3721	5.52926	6.68642	3.68106e-12	1e-12	7.74293e-10	2.25522e-10
chr6	53270592	53270659	7740190	0	-	0.373134	(0.36,0.39]	chr6	594345	1	CDS	CDS:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	4	175	2	5.18608	5.528765	5.87145	3.59712e-12	1.23668e-12	7.62784e-10	2.71868e-10
chr2	26290038	26290123	1686427	0	+	0.411765	(0.39,0.42]	chr2	164885	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	5.29502	5.5287299999999995	5.76244	1.68146e-5	1.61725e-6	4.64895e-4	5.98677e-5
chr7	103495722	103495810	8963198	0	-	0.409091	(0.39,0.42]	chr7	686089	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	5.07258	5.526915000000001	5.98125	1.28715e-7	1.94725e-8	7.78377e-6	1.37715e-6
chr9	127935276	127935365	10862689	0	-	0.550562	(0.53,0.59]	chr9	823212	3	UTR3	UTR3:EXON_MRNA	DPM2	ENSG00000136908.18	ENST00000314392.13:ENST00000495270.1:ENST00000470181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	5.12301	5.525925	5.92884	1.2852e-4	1.11987e-6	0.00241206	4.4003e-5
chr1	55059574	55059663	203805	0	+	0.662921	(0.59,1]	chr1	26166	2	CDS	CDS:EXON_MRNA:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	223	2	3.49975	5.52571	7.55167	7.91952e-6	5.23609e-10	2.48225e-4	5.91573e-8
chr6	122445043	122445143	7923730	0	-	0.45	(0.42,0.455]	chr6	606803	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	163	2	5.19822	5.5255	5.85278	4.59391e-11	6.62781e-12	6.81435e-9	1.31719e-9
chr6	122446927	122447004	7923750	0	-	0.337662	(0.33,0.36]	chr6	606810	3	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	5.15581	5.5251850000000005	5.89456	7.30035e-9	4.79494e-12	6.48319e-7	9.05722e-10
chr6	76026255	76026354	7803754	0	-	0.484848	(0.455,0.49]	chr6	597845	6	INTRON	INTRON	IMPG1	ENSG00000112706.12	ENST00000369950.8:ENST00000611179.4:ENST00000369963.5	protein_coding	protein_coding	protein_coding	protein_coding	39	1794	2	4.4053	5.52497	6.64464	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	66423695	66423786	8835631	0	-	0.450549	(0.42,0.455]	chr7	674738	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	LINC00174:SKP1P1	ENSG00000179406.8:ENSG00000231234.2	ENST00000638517.1:ENST00000640964.1:ENST00000442578.5:ENST00000639086.1:ENST00000638592.1:ENST00000438081.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	1	76	2	4.9583	5.524735	6.09117	7.60033e-8	5.55326e-8	4.89668e-6	3.37237e-6
chr17	44349687	44349751	16234895	0	+	0.609375	(0.59,1]	chr17	1314557	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000588170.5:ENST00000589536.5:ENST00000587518.5:ENST00000588143.5:ENST00000593167.5:ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000592783.5:ENST00000591740.5:ENST00000592323.5:ENST00000589265.5:ENST00000587958.1:ENST00000586782.5:ENST00000639447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.4627	5.524345	5.58599	2.43542e-4	1.04372e-4	0.00399705	0.00186841
chr15	74411632	74411710	15374442	0	-	0.641026	(0.59,1]	chr15	1215155	2	CDS	CDS:EXON_MRNA:PRIMIRNA	SEMA7A:MIR6881	ENSG00000138623.10:ENSG00000277391.1	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6:ENST00000616450.1:ENST00000569617.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	60	2	5.49184	5.524324999999999	5.55681	1.61513e-4	1.60495e-4	0.00286914	0.00265627
chr7	130185279	130185367	9063341	0	-	0.443182	(0.42,0.455]	chr7	692179	2	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	5.16062	5.524295	5.88797	3.72505e-7	9.87381e-9	1.92638e-5	7.68928e-7
chr1	55046522	55046584	203662	0	+	0.548387	(0.53,0.59]	chr1	26125	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000673662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	467	2	5.5052	5.523605	5.54201	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	1299723	1299823	17192530	0	+	0.73	(0.59,1]	chr19	1411979	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.86977	5.522945	6.17612	0.00246014	4.87365e-6	0.0230058	1.51951e-4
chr11	78124024	78124124	12477965	0	-	0.39	(0.36,0.39]	chr11	970766	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5:ENST00000680650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	5.47649	5.5225550000000005	5.56862	4.90567e-6	4.3709e-6	1.526e-4	1.52262e-4
chr9	19380189	19380195	10595606	0	-	0.333333	(0.33,0.36]	chr9	801719	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPS6	ENSG00000137154.13	ENST00000380394.9:ENST00000380384.5:ENST00000315377.4:ENST00000380381.3	protein_coding	protein_coding	protein_coding	protein_coding	3	137	2	4.87877	5.52212	6.16547	8.09451e-10	1e-12	9.51449e-8	2.25522e-10
chr19	1923069	1923128	17194553	0	+	0.644068	(0.59,1]	chr19	1412497	1	CDS	CDS:EXON_MRNA	SCAMP4	ENSG00000227500.10	ENST00000414057.6:ENST00000316097.13:ENST00000409472.5:ENST00000621748.1:ENST00000472442.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	4.54183	5.52097	6.50011	0.0070583	7.17564e-7	0.0478044	3.01149e-5
chr1	30742455	30742549	915653	0	-	0.56383	(0.53,0.59]	chr1	95895	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1:ENST00000476492.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	4.24099	5.5207999999999995	6.80061	1.28258e-5	1.30714e-9	3.70041e-4	1.32956e-7
chr2	75660228	75660327	1894611	0	+	0.30303	(0.29,0.33]	chr2	179770	51	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	5.0833	5.52034	5.95738	4.57622e-5	2.05428e-7	0.00105479	1.04036e-5
chr7	103652550	103652619	8964829	0	-	0.434783	(0.42,0.455]	chr7	686335	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	5.01562	5.520215	6.0248100000000004	1.01971e-4	2.97136e-7	0.0019861	1.42027e-5
chrX	54815247	54815330	18705069	0	+	0.554217	(0.53,0.59]	chrX	1596191	1	CDS	CDS:EXON_MRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.40497	5.519855	5.63474	2.83308e-5	7.53339e-6	7.12614e-4	2.17987e-4
chrX	102798128	102798217	18791348	0	+	0.235955	[0,0.29]	chrX	1602019	1	INTRON	INTRON	LINC00630	ENSG00000223546.7	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.75921	5.519595000000001	6.27998	2.77035e-4	1.22353e-8	0.00444204	9.19778e-7
chr17	38762410	38762453	16217874	0	+	0.511628	(0.49,0.53]	chr17	1310758	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000613870.4:ENST00000620309.4:ENST00000614132.4:ENST00000618159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	102	2	4.08384	5.519395	6.95495	9.87028e-7	1.29335e-10	4.38926e-5	1.69761e-8
chr13	49187478	49187574	14017811	0	-	0.354167	(0.33,0.36]	chr13	1099400	1	EXON_PSEUDO	EXON_PSEUDO	COX7CP1	ENSG00000235957.1	ENST00000446556.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	70	2	5.30454	5.519165	5.73379	5.95199e-7	1.93761e-9	2.84227e-5	1.88458e-7
chr9	100116754	100116853	10773711	0	-	0.555556	(0.53,0.59]	chr9	815489	1	EXON_PSEUDO	EXON_PSEUDO	RPS2P35	ENSG00000238172.2	ENST00000443417.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	154	2	5.31823	5.518885	5.71954	3.54171e-9	9.39103e-11	3.4312e-7	1.28737e-8
chr6	35615096	35615196	7676700	0	-	0.48	(0.455,0.49]	chr6	588457	173	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9:ENST00000542713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.30391	5.518765	5.73362	3.12735e-5	1.35346e-6	6.97306e-4	5.67444e-5
chr22	37850014	37850053	18364386	0	+	0.538462	(0.53,0.59]	chr22	1562141	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	96	2	3.99191	5.51856	7.04521	5.86351e-5	1.48757e-10	0.00129243	1.92788e-8
chr21	45531768	45531863	18279229	0	-	0.642105	(0.59,1]	chr21	1550611	5	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3:ENST00000427839.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.36203	5.5182	5.67437	3.74697e-4	6.83706e-5	0.00560631	0.00132577
chr19	14622068	14622155	17481474	0	-	0.471264	(0.455,0.49]	chr19	1464658	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRE3:ITGB1P1	ENSG00000131355.15:ENSG00000269378.1	ENST00000344373.8:ENST00000443157.6:ENST00000253673.6:ENST00000599900.5:ENST00000596032.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	52	2	4.63978	5.516795	6.39381	6.94032e-4	1.45725e-8	0.00876781	1.07259e-6
chr10	80163533	80163613	11593286	0	-	0.525	(0.49,0.53]	chr10	883053	1	CDS	CDS:EXON_MRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.89405	5.516515	6.13898	2.57983e-4	1.37435e-7	0.00419998	7.34618e-6
chr9	114425617	114425715	10809272	0	-	0.510204	(0.49,0.53]	chr9	819444	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WHRN	ENSG00000095397.16	ENST00000362057.4:ENST00000265134.10:ENST00000674048.1:ENST00000674036.8:ENST00000673811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	4.8063	5.51648	6.22666	1.96248e-7	5.03459e-8	9.99962e-6	3.41647e-6
chr1	21831723	21831796	890705	0	-	0.643836	(0.59,1]	chr1	92252	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	164	2	4.35096	5.516305	6.68165	8.38838e-7	2.29048e-7	3.8264e-5	1.1351e-5
chr17	39260759	39260859	16534365	0	-	0.4	(0.39,0.42]	chr17	1353914	82	UTR3	UTR3:EXON_MRNA:INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	4.42473	5.5146999999999995	6.60467	3.06235e-6	2.09314e-9	1.13887e-4	2.01229e-7
chr5	163437568	163437646	6343356	0	+	0.666667	(0.59,1]	chr5	493978	1	UTR5	UTR5:EXON_MRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	223	2	3.39578	5.513445	7.63111	1.49201e-5	2.87473e-10	4.19661e-4	3.47519e-8
chr1	156318942	156319017	1314128	0	-	0.48	(0.455,0.49]	chr1	133433	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	114	2	5.17955	5.51328	5.84701	5.98588e-7	5.17137e-11	2.85128e-5	7.56478e-9
chr19	46784096	46784144	17595553	0	-	0.479167	(0.455,0.49]	chr19	1481414	1	CDS	CDS:UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	6	288	2	5.33735	5.51294	5.68853	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	131242751	131242832	8533000	0	+	0.395062	(0.39,0.42]	chr7	651592	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	MKLN1:AC009362.2	ENSG00000128585.18:ENSG00000233287.1	ENST00000421797.6:ENST00000416992.6:ENST00000427253.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	43	2	5.10761	5.5124200000000005	5.91723	5.12039e-5	5.41457e-7	0.00114668	2.37407e-5
chr19	46777307	46777405	17595482	0	-	0.602041	(0.59,1]	chr19	1481394	2	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	3	320	2	5.04735	5.511089999999999	5.97483	4.70346e-9	4.73206e-10	4.04076e-7	5.95781e-8
chr8	140527547	140527647	10132118	0	-	0.6	(0.59,1]	chr8	760954	75	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	4.47429	5.510985	6.54768	1.05499e-5	5.34464e-7	3.15564e-4	2.34665e-5
chrX	154434370	154434446	18917897	0	+	0.565789	(0.53,0.59]	chrX	1611914	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	169	2	4.83308	5.51075	6.18842	1.94849e-7	1e-12	1.11133e-5	2.25522e-10
chr1	180873872	180873942	586499	0	+	0.485714	(0.455,0.49]	chr1	60725	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3:ENST00000498177.1:ENST00000464817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	5.07172	5.5105699999999995	5.94942	8.3067e-5	4.68666e-7	0.00171126	2.08717e-5
chr11	119051103	119051173	12626496	0	-	0.485714	(0.455,0.49]	chr11	979791	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	281	2	4.42606	5.508825	6.59159	5.55152e-8	1e-12	3.70941e-6	2.25522e-10
chr11	59556425	59556524	11958622	0	+	0.525253	(0.49,0.53]	chr11	915353	101	INTRON	INTRON	CMB9-60A24.1	ENSG00000287264.1	ENST00000659845.1	lncRNA	lncRNA	lncRNA	lncRNA	24	1102	2	5.39448	5.508485	5.62249	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	34942728	34942820	13686641	0	+	0.76087	(0.59,1]	chr13	1078424	6	UTR5	UTR5:EXON_MRNA	NBEA	ENSG00000172915.19	ENST00000379939.7:ENST00000400445.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.86977	5.50765	6.14553	0.00246014	5.79142e-6	0.0230058	1.75119e-4
chr3	48469022	48469106	4167350	0	-	0.595238	(0.59,1]	chr3	348997	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	122	2	4.86712	5.506925	6.14673	8.58437e-6	7.89754e-7	2.65793e-4	3.26923e-5
chr16	23571789	23571889	15594616	0	+	0.47	(0.455,0.49]	chr16	1236627	13	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.16215	5.50685	5.85155	5.04348e-5	9.4476e-7	0.00113788	3.80876e-5
chr9	113258777	113258862	10425102	0	+	0.470588	(0.455,0.49]	chr9	784733	2	CDS	CDS:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.16215	5.50685	5.85155	5.04348e-5	9.4476e-7	0.00113788	3.80876e-5
chr1	23795449	23795539	99058	0	+	0.388889	(0.36,0.39]	chr1	11567	9	UTR3	UTR3:EXON_MRNA	LYPLA2	ENSG00000011009.11	ENST00000374514.8	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	4.73146	5.506635	6.28181	3.06966e-7	7.29293e-9	1.45846e-5	6.48212e-7
chr22	39015672	39015751	18368416	0	+	0.556962	(0.53,0.59]	chr22	1562835	2	CDS	CDS:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	4.44255	5.506375	6.5702	3.41603e-6	8.55645e-9	1.12474e-4	7.38823e-7
chr19	14406330	14406405	17242503	0	+	0.693333	(0.59,1]	chr19	1421853	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.2538	5.50572	5.75764	5.85045e-4	4.53637e-5	0.00793559	9.4617e-4
chr12	54403255	54403324	13343804	0	-	0.492754	(0.49,0.53]	chr12	1049790	2	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	4.9968	5.505415	6.01403	2.61944e-7	4.17016e-8	1.42854e-5	2.62949e-6
chr5	76732808	76732907	6044918	0	+	0.555556	(0.53,0.59]	chr5	474229	6	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.26491	5.505245	5.74558	6.31437e-5	3.61407e-6	0.00124286	1.29307e-4
chr1	55056090	55056189	203766	0	+	0.717172	(0.59,1]	chr1	26146	2	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	241	2	5.42863	5.504875	5.58112	1.72185e-8	8.45141e-9	1.24091e-6	7.33695e-7
chr17	28649135	28649205	16486772	0	-	0.528571	(0.49,0.53]	chr17	1348103	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SDF2	ENSG00000132581.10	ENST00000247020.9:ENST00000592250.5:ENST00000585749.5:ENST00000588472.6:ENST00000587788.1:ENST00000587629.5:ENST00000591903.1:ENST00000589788.1:ENST00000587338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	5.48118	5.504775	5.52837	1.24248e-5	7.50805e-6	3.28918e-4	2.3779e-4
chr16	20722281	20722380	15883186	0	-	0.323232	(0.29,0.33]	chr16	1270405	1	INTRON	INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	48	2	4.45534	5.503715	6.55209	0.00110984	1.26407e-9	0.0127344	1.29328e-7
chr1	20653700	20653774	882262	0	-	0.581081	(0.53,0.59]	chr1	91124	2	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	5	316	2	5.31416	5.50368	5.6932	2.39265e-11	1e-12	4.1821e-9	2.25522e-10
chr12	56131243	56131316	12898268	0	+	0.424658	(0.42,0.455]	chr12	1004218	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550986.1:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	4.93872	5.5036249999999995	6.06853	2.14495e-7	5.07972e-8	1.07721e-5	3.4372e-6
chr11	125583583	125583683	12194209	0	+	0.57	(0.53,0.59]	chr11	940680	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000531636.5:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	5.12301	5.503405	5.8838	1.2852e-4	1.51824e-6	0.00241206	5.67784e-5
chr20	34581609	34581672	17947230	0	-	0.492063	(0.49,0.53]	chr20	1520043	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	5.4156	5.50337	5.59114	1.84143e-5	5.02516e-6	4.53637e-4	1.7067e-4
chr9	113260271	113260322	10425118	0	+	0.509804	(0.49,0.53]	chr9	784739	1	CDS	CDS:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.4156	5.50337	5.59114	1.84143e-5	5.02516e-6	4.53637e-4	1.7067e-4
chr7	33174288	33174387	8212193	0	+	0.383838	(0.36,0.39]	chr7	626695	162	INTRON	INTRON	BBS9	ENSG00000122507.21	ENST00000672717.1:ENST00000673462.1:ENST00000673230.1:ENST00000671890.1:ENST00000350941.7:ENST00000396127.6:ENST00000355070.6:ENST00000671871.1:ENST00000673431.1:ENST00000465037.5:ENST00000672973.1:ENST00000433714.5:ENST00000242067.11:ENST00000671963.1:ENST00000673219.1:ENST00000673056.1:ENST00000671952.1:ENST00000425508.6:ENST00000442858.1:ENST00000672453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.58747	5.50242	6.41737	6.55819e-4	7.87465e-9	0.00860229	6.30554e-7
chr21	46295463	46295562	18150368	0	+	0.676768	(0.59,1]	chr21	1540463	34	INTRON	INTRON	YBEY	ENSG00000182362.14	ENST00000397701.9:ENST00000329319.7:ENST00000339195.10:ENST00000397692.5:ENST00000397694.5:ENST00000397691.1	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	5.4627	5.501585	5.54047	2.43542e-4	7.65892e-9	0.00399705	6.17817e-7
chr18	31536353	31536429	16809057	0	+	0.460526	(0.455,0.49]	chr18	1386456	3	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.50805	5.501284999999999	6.49452	0.00122223	6.22217e-9	0.0135383	5.13192e-7
chr17	59666479	59666561	16295291	0	+	0.463415	(0.455,0.49]	chr17	1321670	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	5.45759	5.501215	5.54484	4.89523e-6	6.20166e-10	1.67428e-4	6.84699e-8
chr7	114230841	114230941	8466023	0	+	0.34	(0.33,0.36]	chr7	646846	674	INTRON	INTRON	FOXP2	ENSG00000128573.26	ENST00000412402.5:ENST00000440349.5:ENST00000441290.6:ENST00000635638.1:ENST00000495516.1:ENST00000634411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.6856	5.500515	6.31543	3.92435e-4	1.40482e-8	0.00583618	1.0408e-6
chr10	27896975	27897075	11426947	0	-	0.39	(0.36,0.39]	chr10	871323	340	INTRON	INTRON	ODAD2	ENSG00000169126.16	ENST00000673384.1:ENST00000672841.1:ENST00000305242.10:ENST00000672877.1:ENST00000673439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.73346	5.50035	6.26724	3.2963e-4	2.79819e-8	0.00504024	1.8758e-6
chr8	96785163	96785246	9501906	0	+	0.518072	(0.49,0.53]	chr8	722596	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1:ENST00000525310.1:ENST00000519484.1:ENST00000521142.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	91	2	5.46274	5.499575	5.53641	1.13094e-5	3.32616e-10	3.3464e-4	3.95379e-8
chr11	130135638	130135715	12207044	0	+	0.61039	(0.59,1]	chr11	942064	2	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	143	2	5.4415	5.499155	5.55681	1.60495e-4	1.56986e-8	0.00286914	1.14389e-6
chr1	224189761	224189854	728454	0	+	0.44086	(0.42,0.455]	chr1	73579	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	5.11218	5.49863	5.88508	6.01815e-5	8.1674e-7	0.00130886	3.36299e-5
chrX	48459731	48459803	19062741	0	-	0.458333	(0.455,0.49]	chrX	1620382	1	CDS	CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4:ENST00000480105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	4.67428	5.49841	6.32254	4.63488e-7	2.62373e-8	2.31256e-5	1.77777e-6
chr19	582513	582577	17188333	0	+	0.5625	(0.53,0.59]	chr19	1410784	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	409	2	4.72992	5.49754	6.26516	3.21984e-10	1e-12	4.25657e-8	2.25522e-10
chrX	115703839	115703932	18834861	0	+	0.494624	(0.49,0.53]	chrX	1604659	12	EXON_PSEUDO	EXON_PSEUDO	EEF1GP5	ENSG00000234785.1	ENST00000434365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	76	2	4.81593	5.497495	6.17906	1.6567e-7	1.01082e-7	9.74137e-6	5.6272e-6
chr14	100734240	100734333	14489603	0	+	0.655914	(0.59,1]	chr14	1132123	2	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	6	488	2	4.8298	5.496705	6.16361	1.29135e-10	1.1288e-10	1.69754e-8	1.66862e-8
chr6	166929687	166929739	8083227	0	-	0.673077	(0.59,1]	chr6	616942	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	4.54183	5.4963750000000005	6.45092	0.0070583	9.69699e-7	0.0478044	3.89355e-5
chr11	75568938	75569015	12023356	0	+	0.558442	(0.53,0.59]	chr11	927017	1	CDS	CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000525611.5:ENST00000525876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	283	2	4.80806	5.4961850000000005	6.18431	2.90361e-9	1e-12	2.89216e-7	2.25522e-10
chr15	72350591	72350691	15369502	0	-	0.51	(0.49,0.53]	chr15	1214444	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.89405	5.49591	6.09777	2.57983e-4	1.87775e-7	0.00419998	9.63683e-6
chr16	74606656	74606740	16032568	0	-	0.642857	(0.59,1]	chr16	1287399	1	CDS	CDS:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	4.9413	5.495475	6.04965	0.00191468	9.85057e-6	0.0190905	2.72926e-4
chr6	20835488	20835588	7078631	0	+	0.36	(0.33,0.36]	chr6	541528	539	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.33344	5.495365	5.65729	1.82386e-5	1.06014e-6	4.52248e-4	4.64027e-5
chr15	65572234	65572300	14980113	0	+	0.424242	(0.42,0.455]	chr15	1177594	1	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	5.0485	5.49501	5.94152	2.47621e-7	2.60143e-8	1.36676e-5	1.76574e-6
chr17	49411677	49411758	16581220	0	-	0.481481	(0.455,0.49]	chr17	1362378	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1:ENST00000507748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	5.44482	5.49483	5.54484	1.36044e-5	4.89523e-6	3.54469e-4	1.67428e-4
chr19	12878751	12878834	17471768	0	-	0.614458	(0.59,1]	chr19	1463257	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000592506.1:ENST00000586547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	132	2	5.22051	5.49439	5.76827	5.97759e-5	7.46464e-8	0.00130766	4.33833e-6
chr8	140515247	140515342	9641869	0	+	0.515789	(0.49,0.53]	chr8	730104	1	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10:ENST00000519618.1:ENST00000523569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	5.16557	5.493869999999999	5.82217	6.36135e-5	1.36598e-6	0.00136069	5.18684e-5
chr16	31090938	31091035	15916932	0	-	0.546392	(0.53,0.59]	chr16	1275803	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000533518.5:ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	4.96656	5.4937450000000005	6.02093	5.66478e-7	6.94912e-8	2.7364e-5	4.08427e-6
chr11	88296203	88296264	12533086	0	-	0.47541	(0.455,0.49]	chr11	972526	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	5.47599	5.49321	5.51043	9.08728e-6	7.64978e-6	2.53877e-4	2.4151e-4
chr6	32155687	32155783	7118448	0	+	0.541667	(0.53,0.59]	chr6	546921	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	4.6032400000000004	5.492520000000001	6.3818	1.08833e-6	4.09818e-8	4.73591e-5	2.59819e-6
chr19	11342814	11342914	17462751	0	-	0.58	(0.53,0.59]	chr19	1461653	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RAB3D:TMEM205	ENSG00000105514.8:ENSG00000105518.14	ENST00000589655.1:ENST00000447337.5:ENST00000593256.6:ENST00000586218.5:ENST00000586956.5:ENST00000354882.10:ENST00000586590.5:ENST00000585722.1:ENST00000587948.5:ENST00000589555.5:ENST00000588560.5:ENST00000588321.1:ENST00000586701.1:ENST00000592952.5:ENST00000590482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	5.399	5.4921500000000005	5.5853	3.02387e-5	9.83355e-6	6.78876e-4	2.98194e-4
chr17	80927570	80927669	16377717	0	+	0.525253	(0.49,0.53]	chr17	1331197	17	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	5.27477	5.491905	5.70904	4.14521e-5	2.30382e-6	8.8376e-4	8.86852e-5
chr3	128632017	128632087	4441431	0	-	0.428571	(0.42,0.455]	chr3	369019	2	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	5.44441	5.491255000000001	5.5381	8.23077e-6	3.08093e-10	2.56136e-4	3.7001e-8
chr5	127552410	127552509	6205033	0	+	0.383838	(0.36,0.39]	chr5	483456	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2:ENST00000513427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	112	2	4.70052	5.4911650000000005	6.28181	7.29293e-9	2.2513e-10	6.48212e-7	2.79515e-8
chr11	67682962	67683058	12428895	0	-	0.53125	(0.53,0.59]	chr11	965763	3	EXON_PSEUDO	EXON_PSEUDO	RPL37P2	ENSG00000239559.2	ENST00000472498.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	64	2	4.30776	5.490905	6.67405	0.00407289	3.84457e-9	0.0324137	3.39055e-7
chr19	35166250	35166323	17303862	0	+	0.561644	(0.53,0.59]	chr19	1430630	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	376	2	4.97138	5.49017	6.00896	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	41579130	41579230	13990070	0	-	0.35	(0.33,0.36]	chr13	1097289	29	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.83198	5.489875	6.14777	1.88689e-4	5.68759e-8	0.0032588	3.43245e-6
chr6	33416697	33416771	7669548	0	-	0.554054	(0.53,0.59]	chr6	587668	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	152	2	4.22219	5.48978	6.75737	5.21463e-9	1.77309e-9	4.4104e-7	1.87805e-7
chr6	27132750	27132795	7648718	0	-	0.444444	(0.42,0.455]	chr6	582719	1	UTR5	UTR5:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	4.02236	5.4891749999999995	6.95599	1.61783e-6	2.6864e-11	5.98677e-5	4.63732e-9
chr2	62146392	62146487	1844798	0	+	0.473684	(0.455,0.49]	chr2	175130	2	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:SS3_PROX:INTRON	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000458337.5:ENST00000444166.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	168	2	5.4322	5.488519999999999	5.54484	4.89523e-6	1e-12	1.67428e-4	2.25522e-10
chr5	176507145	176507242	6402679	0	+	0.587629	(0.53,0.59]	chr5	497383	3	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.76025	5.488135	6.21602	3.4642e-7	1.37682e-7	1.61837e-5	8.24248e-6
chr16	70779101	70779200	16000153	0	-	0.525253	(0.49,0.53]	chr16	1285066	66	INTRON	INTRON	VAC14	ENSG00000103043.15	ENST00000261776.10:ENST00000568886.5:ENST00000568548.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	941	2	4.72793	5.487439999999999	6.24695	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	11446271	11446350	17231230	0	+	0.620253	(0.59,1]	chr19	1419912	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585325.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	588	2	4.61885	5.48731	6.35577	3.54529e-9	1e-12	3.43149e-7	2.25522e-10
chr8	97819139	97819238	9506890	0	+	0.353535	(0.33,0.36]	chr8	722756	1	CDS	CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	4.90843	5.486795	6.06516	3.99893e-8	5.90221e-10	2.81425e-6	6.54537e-8
chr15	52937729	52937828	15289451	0	-	0.484848	(0.455,0.49]	chr15	1206821	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P22	ENSG00000259612.1	ENST00000559385.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	44	2	5.07172	5.4865200000000005	5.90132	8.3067e-5	6.63378e-7	0.00171126	2.82038e-5
chr1	10417375	10417442	39887	0	+	0.537313	(0.53,0.59]	chr1	4824	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	4.91056	5.48634	6.06212	4.23179e-7	1.08461e-7	2.1371e-5	5.98453e-6
chr7	155302333	155302417	8632591	0	+	0.488095	(0.455,0.49]	chr7	659273	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1:ENST00000468307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	346	2	4.98533	5.486275	5.98722	2.74728e-10	1e-12	3.69499e-8	2.25522e-10
chr11	119046721	119046802	12626437	0	-	0.54321	(0.53,0.59]	chr11	979753	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.5586	5.48622	6.41384	0.00161229	3.18937e-8	0.0169168	2.10263e-6
chr3	33014055	33014140	4111109	0	-	0.505882	(0.49,0.53]	chr3	343432	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	217	2	5.39633	5.485315	5.5743	1.8717e-10	1e-12	2.63088e-8	2.25522e-10
chrX	119582587	119582676	18841626	0	+	0.41573	(0.39,0.42]	chrX	1605596	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBE2A	ENSG00000077721.16	ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000629303.2:ENST00000628549.1:ENST00000371569.6:ENST00000628734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	5.38032	5.484675	5.58903	9.82886e-6	5.14263e-6	2.98194e-4	1.58468e-4
chr17	44350283	44350340	16234903	0	+	0.631579	(0.59,1]	chr17	1314561	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000587518.5:ENST00000588143.5:ENST00000593167.5:ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000592783.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	117	2	4.42422	5.482810000000001	6.5414	1.17291e-5	9.02377e-7	3.12994e-4	4.05425e-5
chr3	110683057	110683154	4350174	0	-	0.494845	(0.49,0.53]	chr3	362849	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP29	ENSG00000244722.1	ENST00000483479.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	110	2	4.99034	5.4823	5.97426	1.6002e-4	4.25249e-12	0.00286408	8.16969e-10
chr7	44579478	44579578	8800227	0	-	0.53	(0.49,0.53]	chr7	671336	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	4.73676	5.48171	6.22666	3.38109e-7	5.03459e-8	1.5857e-5	3.41647e-6
chr2	27203778	27203867	2569397	0	-	0.58427	(0.53,0.59]	chr2	231204	1	CDS	CDS:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000492069.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	5.11707	5.480195	5.84332	1.35965e-4	1.90853e-6	0.00231202	7.59317e-5
chr17	59680911	59680984	16295447	0	+	0.438356	(0.42,0.455]	chr17	1321715	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	3	140	2	3.09173	5.479195000000001	7.86666	1.40817e-4	1e-12	0.00258348	2.25522e-10
chr1	1051252	1051310	2402	0	+	0.655172	(0.59,1]	chr1	569	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.9413	5.478759999999999	6.01622	0.00191468	1.18141e-5	0.0190905	3.14877e-4
chr2	96878415	96878493	2792378	0	-	0.602564	(0.59,1]	chr2	249292	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	50	4708	2	5.27548	5.47875	5.68202	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	6617114	6617153	12249959	0	-	0.589744	(0.53,0.59]	chr11	946860	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	109	2	4.102	5.47817	6.85434	1.01285e-6	7.63084e-10	4.03248e-5	9.03558e-8
chr7	103472343	103472437	8962950	0	-	0.287234	[0,0.29]	chr7	686032	7	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	5.07045	5.47791	5.88537	5.08054e-5	3.12497e-7	0.00114377	1.48071e-5
chr1	151067397	151067497	469973	0	+	0.51	(0.49,0.53]	chr1	47854	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MLLT11	ENSG00000213190.4	ENST00000368921.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	5.03381	5.47658	5.91935	1.49689e-4	5.27035e-7	0.0024973	2.57927e-5
chr2	100282110	100282209	2810554	0	-	0.424242	(0.42,0.455]	chr2	250915	104	UTR3	UTR3:EXON_MRNA	LONRF2	ENSG00000170500.13	ENST00000393437.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.80064	5.476414999999999	6.15219	3.0479e-4	1.13536e-7	0.00472028	6.23788e-6
chr1	155330661	155330752	483798	0	+	0.384615	(0.36,0.39]	chr1	50857	2	UTR3	UTR3:EXON_MRNA	RUSC1	ENSG00000160753.16	ENST00000368352.10:ENST00000368354.7:ENST00000368347.8:ENST00000462780.5:ENST00000368349.8:ENST00000490373.5:ENST00000471876.5:ENST00000292254.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	5.20331	5.47635	5.74939	2.53222e-5	1.44783e-6	6.51851e-4	5.46137e-5
chr14	30886225	30886312	14201266	0	+	0.517241	(0.49,0.53]	chr14	1112913	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	5.08061	5.47626	5.87191	1.00361e-4	9.67449e-7	0.00196575	3.88631e-5
chr11	66346584	66346680	12424252	0	-	0.635417	(0.59,1]	chr11	964607	2	CDS	CDS:EXON_MRNA	B4GAT1	ENSG00000174684.7	ENST00000311181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.86977	5.476045	6.08232	0.00246014	8.23309e-6	0.0230058	2.34786e-4
chr17	41764922	41764994	16543085	0	-	0.569444	(0.53,0.59]	chr17	1356295	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.66936	5.47527	6.28118	0.00103174	8.87941e-8	0.0121443	5.04867e-6
chr2	27040434	27040496	1690673	0	+	0.66129	(0.59,1]	chr2	165364	2	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000444135.5:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	4.7151	5.475265	6.23543	0.00412279	3.47367e-6	0.0325842	1.13687e-4
chr1	160999042	160999091	1331431	0	-	0.489796	(0.455,0.49]	chr1	136431	1	CDS	CDS:UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	128	2	5.47351	5.47475	5.47599	7.64978e-6	2.38298e-12	2.4151e-4	4.87681e-10
chr2	27243418	27243518	1691798	0	+	0.62	(0.59,1]	chr2	165814	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.36203	5.47401	5.58599	3.74697e-4	1.04372e-4	0.00560631	0.00186841
chr11	68688848	68688926	12001143	0	+	0.397436	(0.39,0.42]	chr11	923878	1	CDS	CDS:EXON_MRNA	GAL	ENSG00000069482.7	ENST00000265643.4	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	5.04052	5.473985	5.90745	1.96369e-8	6.44906e-12	1.51544e-6	1.17861e-9
chr16	74472348	74472411	16031206	0	-	0.444444	(0.42,0.455]	chr16	1287311	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	5.11218	5.473755000000001	5.83533	6.01815e-5	1.15767e-6	0.00130886	4.52486e-5
chr3	184183996	184184091	3948259	0	+	0.452632	(0.42,0.455]	chr3	332048	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000439647.5:ENST00000461733.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	5.11218	5.473755000000001	5.83533	6.01815e-5	1.15767e-6	0.00130886	4.52486e-5
chr17	44351631	44351713	16234926	0	+	0.634146	(0.59,1]	chr17	1314579	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000589923.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	176	2	4.86248	5.4736899999999995	6.0849	1.19649e-5	1.85145e-8	3.513e-4	1.32663e-6
chr19	41957017	41957068	17570729	0	-	0.686275	(0.59,1]	chr19	1477230	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RABAC1:CTD-2575K13.8	ENSG00000105404.11:ENSG00000285505.1	ENST00000601891.5:ENST00000600292.5:ENST00000598057.1:ENST00000222008.11:ENST00000601028.1:ENST00000595226.1:ENST00000601078.5:ENST00000644613.1:ENST00000596171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	4.44671	5.47341	6.50011	0.00931497	7.17564e-7	0.0586162	3.01149e-5
chr2	205729545	205729644	2336634	0	+	0.636364	(0.59,1]	chr2	210943	11	INTRON	INTRON	NRP2	ENSG00000118257.17	ENST00000360409.7:ENST00000357785.10:ENST00000417189.5:ENST00000357118.8:ENST00000412873.2:ENST00000272849.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.44671	5.47341	6.50011	0.00931497	7.17564e-7	0.0586162	3.01149e-5
chr1	203721196	203721267	669685	0	+	0.450704	(0.42,0.455]	chr1	67478	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.42869	5.47272	5.51675	1.60756e-5	5.14372e-6	4.07445e-4	1.73456e-4
chr19	6531219	6531303	17213487	0	+	0.761905	(0.59,1]	chr19	1415910	2	CDS	CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.65298	5.472685	6.29239	3.73496e-6	2.49631e-6	1.32675e-4	8.6736e-5
chrX	66189853	66189938	18717512	0	+	0.529412	(0.49,0.53]	chrX	1596971	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	174	2	4.35855	5.47012	6.58169	5.06834e-6	1e-12	1.7169e-4	2.25522e-10
chr14	20476698	20476796	14171379	0	+	0.479592	(0.455,0.49]	chr14	1109155	2	UTR3	UTR3:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	5.26652	5.469955000000001	5.67339	2.05982e-6	3.64863e-9	8.10246e-5	3.23821e-7
chr7	101206380	101206436	8953621	0	-	0.660714	(0.59,1]	chr7	684648	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.30893	5.4698899999999995	5.63085	4.67312e-4	8.43355e-5	0.00661038	0.0015859
chrX	153702006	153702056	19273624	0	-	0.62	(0.59,1]	chrX	1637354	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	5.30893	5.4698899999999995	5.63085	4.67312e-4	8.43355e-5	0.00661038	0.0015859
chr1	171713401	171713500	1368648	0	-	0.353535	(0.33,0.36]	chr1	139473	22	INTRON	INTRON	VAMP4	ENSG00000117533.15	ENST00000236192.12:ENST00000474047.5:ENST00000367740.2:ENST00000482519.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	5.08655	5.469725	5.8529	4.6453e-5	5.58947e-7	0.00106753	2.43789e-5
chr4	81504316	81504416	5488015	0	-	0.49	(0.455,0.49]	chr4	439895	325	INTRON	INTRON	RASGEF1B	ENSG00000138670.18	ENST00000638048.1:ENST00000512716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	5.14774	5.469585	5.79143	7.45457e-5	8.96581e-7	0.00142165	4.03386e-5
chr4	141254493	141254593	5682896	0	-	0.52	(0.49,0.53]	chr4	451027	128	INTRON	INTRON	RP11-586L23.1	ENSG00000248747.1	ENST00000514347.1	lncRNA	lncRNA	lncRNA	lncRNA	3	163	2	2.81492	5.469234999999999	8.12355	6.31846e-4	1e-12	0.00837621	2.25522e-10
chr3	9893095	9893186	3300577	0	+	0.505495	(0.49,0.53]	chr3	290134	3	CDS	CDS:UTR3:EXON_MRNA	JAGN1	ENSG00000171135.15	ENST00000489724.2:ENST00000647897.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.39399	5.468945	5.5439	1.71804e-5	8.44877e-6	4.72485e-4	2.39255e-4
chr5	71344625	71344723	6630040	0	-	0.44898	(0.42,0.455]	chr5	512464	25	INTRON	INTRON	LINC02197	ENSG00000250387.3	ENST00000671145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.91213	5.46847	6.0248100000000004	1.75074e-4	2.97136e-7	0.00306313	1.42027e-5
chr1	201007082	201007181	1445388	0	-	0.525253	(0.49,0.53]	chr1	144921	10	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.11868	5.468355000000001	5.81803	9.66505e-5	1.08721e-6	0.00175267	4.73591e-5
chr2	44066067	44066154	2624079	0	-	0.505747	(0.49,0.53]	chr2	236311	3	EXON_PSEUDO	EXON_PSEUDO	AC019129.1	ENSG00000219391.1	ENST00000403786.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	86	2	5.40809	5.46823	5.52837	7.50805e-6	1.1109e-9	2.3779e-4	1.14803e-7
chr1	38054600	38054700	143161	0	+	0.52	(0.49,0.53]	chr1	17945	66	INTRON	INTRON	MIR3659HG	ENSG00000224592.5	ENST00000432922.5:ENST00000428151.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	5.16557	5.4681049999999995	5.77064	6.36135e-5	1.94063e-6	0.00136069	6.9799e-5
chr4	55857417	55857516	4844008	0	+	0.50505	(0.49,0.53]	chr4	399010	31	INTRON	INTRON	EXOC1	ENSG00000090989.18	ENST00000381295.7:ENST00000346134.11:ENST00000349598.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.67972	5.467865	6.25601	6.94757e-4	5.54522e-8	0.00876781	3.37102e-6
chr11	6617745	6617776	12249968	0	-	0.451613	(0.42,0.455]	chr11	946866	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6:ENST00000528917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	5.0468	5.467385	5.88797	1.33918e-4	3.72505e-7	0.00229039	1.92638e-5
chr3	13391210	13391307	4046977	0	-	0.587629	(0.53,0.59]	chr3	339712	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	99	2	5.40497	5.466555	5.52814	2.83308e-5	5.58677e-10	7.12614e-4	6.25722e-8
chr11	88296143	88296203	12533085	0	-	0.483333	(0.455,0.49]	chr11	972526	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	4.53876	5.466285	6.39381	1.31171e-6	1.45725e-8	5.53834e-5	1.07259e-6
chr10	75210750	75210844	11126398	0	+	0.744681	(0.59,1]	chr10	846620	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	154	2	4.2591	5.466200000000001	6.6733	1.20565e-6	4.04492e-7	4.68197e-5	2.05866e-5
chr19	35166141	35166171	17303860	0	+	0.433333	(0.42,0.455]	chr19	1430628	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	279	2	5.25794	5.46617	5.6744	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	133819666	133819766	3752506	0	+	0.55	(0.53,0.59]	chr3	321407	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.95825	5.4653849999999995	5.97252	2.87508e-4	8.30115e-7	0.00457439	3.4056e-5
chr9	35059442	35059531	10638089	0	-	0.573034	(0.53,0.59]	chr9	804509	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.95825	5.4653849999999995	5.97252	2.87508e-4	8.30115e-7	0.00457439	3.4056e-5
chrX	66203363	66203434	18717658	0	+	0.492958	(0.49,0.53]	chrX	1597017	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	173	2	4.35855	5.465145	6.57174	5.06834e-6	1e-12	1.7169e-4	2.25522e-10
chrX	46288200	46288293	19057041	0	-	0.526882	(0.49,0.53]	chrX	1619579	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01186:ACTBP1	ENSG00000236751.2:ENSG00000229145.1	ENST00000668280.1:ENST00000417985.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	48	2	4.79086	5.46492	6.13898	4.20783e-4	1.37435e-7	0.00611538	7.34618e-6
chr7	103636234	103636312	8964660	0	-	0.487179	(0.455,0.49]	chr7	686310	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	3.81275	5.46482	7.11689	0.0138827	1.96418e-11	0.0760883	3.18285e-9
chr1	36023322	36023422	140009	0	+	0.36	(0.33,0.36]	chr1	17332	89	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	4.29439	5.46406	6.63373	9.429e-6	8.13851e-10	2.89287e-4	8.72045e-8
chr3	48600481	48600567	4168713	0	-	0.55814	(0.53,0.59]	chr3	349580	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000480561.5:ENST00000415995.5:ENST00000460105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	4.30776	5.4639500000000005	6.62014	0.00407289	6.02789e-9	0.0324137	5.00481e-7
chr2	214847445	214847544	2374864	0	+	0.353535	(0.33,0.36]	chr2	213369	1	INTRON	INTRON	SNHG31	ENSG00000229267.3	ENST00000655899.1:ENST00000670391.1:ENST00000664818.1:ENST00000607412.1	lncRNA	lncRNA	lncRNA	lncRNA	2	97	2	5.19199	5.46289	5.73379	5.95199e-7	3.15135e-11	2.84227e-5	4.84979e-9
chr19	49335395	49335467	17369668	0	+	0.486111	(0.455,0.49]	chr19	1442728	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.97525	5.4623349999999995	5.94942	1.38474e-4	4.68666e-7	0.00254294	2.08717e-5
chr11	74746014	74746114	12462689	0	-	0.54	(0.53,0.59]	chr11	969147	4	EXON_PSEUDO	EXON_PSEUDO	RP11-864N7.2	ENSG00000227615.1	ENST00000428553.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	50	2	4.86823	5.46216	6.05609	4.35895e-4	4.62627e-7	0.00623608	2.06661e-5
chr17	7654119	7654188	16106151	0	+	0.565217	(0.53,0.59]	chr17	1297113	2	CDS	CDS:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000577026.5:ENST00000250111.9:ENST00000577113.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.86823	5.46216	6.05609	4.35895e-4	4.62627e-7	0.00623608	2.06661e-5
chr20	49084093	49084162	17811739	0	+	0.478261	(0.455,0.49]	chr20	1506546	2	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	5.13282	5.462125	5.79143	8.96581e-7	1.20095e-8	4.03386e-5	9.06312e-7
chr2	158496792	158496892	2156489	0	+	0.41	(0.39,0.42]	chr2	198753	381	INTRON	INTRON	PKP4	ENSG00000144283.22	ENST00000389759.8:ENST00000426248.7:ENST00000628904.2:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	4.73936	5.462009999999999	6.18466	3.05649e-7	2.37277e-8	1.45677e-5	1.77828e-6
chr19	52220188	52220249	17382233	0	+	0.47541	(0.455,0.49]	chr19	1445778	1	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.07172	5.461634999999999	5.85155	8.3067e-5	9.4476e-7	0.00171126	3.80876e-5
chr10	87792656	87792755	11608267	0	-	0.353535	(0.33,0.36]	chr10	884073	1	CDS	CDS:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1:ENST00000495903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.96487	5.46145	5.95803	9.26851e-5	2.53891e-7	0.00185187	1.24442e-5
chr19	40622400	40622489	17330462	0	+	0.764045	(0.59,1]	chr19	1436043	1	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000612121.4:ENST00000599724.5:ENST00000597071.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000618486.4:ENST00000318809.11:ENST00000597816.5:ENST00000596351.5:ENST00000622107.4:ENST00000594448.5:ENST00000595665.1:ENST00000622457.1:ENST00000594116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.00945	5.460235	5.91102	0.00149725	2.06903e-5	0.0159607	4.99825e-4
chr10	124402926	124402990	11729308	0	-	0.453125	(0.42,0.455]	chr10	895060	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1:ENST00000467675.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	4.34987	5.460205	6.57054	5.55486e-6	1.16955e-9	1.68903e-4	1.307e-7
chr11	62626064	62626114	12409698	0	-	0.52	(0.49,0.53]	chr11	961229	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	134	2	5.10552	5.460105	5.81469	1.45408e-8	2.17082e-11	1.17124e-6	3.48211e-9
chr3	154204995	154205095	3821362	0	+	0.36	(0.33,0.36]	chr3	325875	99	INTRON	INTRON	ARHGEF26	ENSG00000114790.13	ENST00000356448.8:ENST00000465093.6:ENST00000496710.5:ENST00000465817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.6856	5.459820000000001	6.23404	3.92435e-4	2.79464e-8	0.00583618	1.8758e-6
chr8	143992273	143992373	9649806	0	+	0.59	(0.53,0.59]	chr8	731407	5	CDS	CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000529301.5:ENST00000534791.5:ENST00000525513.1:ENST00000533044.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	112	2	4.70141	5.458715	6.21602	1.37682e-7	7.68795e-9	8.24248e-6	6.19157e-7
chr1	43364076	43364137	968541	0	-	0.459016	(0.455,0.49]	chr1	102050	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	4.38917	5.457875	6.52658	3.90809e-6	4.72215e-9	1.38004e-4	4.04884e-7
chr12	51242358	51242458	12876225	0	+	0.55	(0.53,0.59]	chr12	1000614	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	4.85231	5.457215	6.06212	4.23179e-7	1.71119e-7	2.1371e-5	8.87341e-6
chr12	69597701	69597766	12943534	0	+	0.415385	(0.39,0.42]	chr12	1009002	2	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.98825	5.456915	5.92558	1.62756e-4	2.00458e-7	0.00266622	1.13771e-5
chr13	46797104	46797161	14012483	0	-	0.596491	(0.59,1]	chr13	1098908	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000471867.3	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	4.03263	5.456575	6.88052	1.11254e-4	6.21413e-8	0.00213212	3.71551e-6
chr8	87162011	87162111	9461810	0	+	0.43	(0.42,0.455]	chr8	720369	1170	INTRON	INTRON	CNBD1	ENSG00000176571.12	ENST00000518476.6:ENST00000522427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.40276	5.456505	6.51025	0.0017618	6.20371e-9	0.0180053	5.13192e-7
chr1	77129205	77129298	309375	0	+	0.430108	(0.42,0.455]	chr1	31621	2	EXON_PSEUDO	EXON_PSEUDO	RP4-706A16.3	ENSG00000226084.5	ENST00000471722.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	122	2	5.27226	5.45529	5.63832	2.4702e-9	1.16624e-10	2.51564e-7	1.55476e-8
chr1	30735172	30735265	915574	0	-	0.494624	(0.49,0.53]	chr1	95868	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	228	2	4.39936	5.45496	6.51056	5.99614e-10	1e-12	7.33274e-8	2.25522e-10
chr5	181243858	181243916	7009030	0	-	0.534483	(0.53,0.59]	chr5	537356	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000507000.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1:ENST00000503170.1:ENST00000514318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	1628	2	4.69813	5.454695	6.21126	1e-12	1e-12	2.46312e-10	2.25522e-10
chr18	59349112	59349174	17142533	0	-	0.435484	(0.42,0.455]	chr18	1407641	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	415	2	4.77271	5.45448	6.13625	8.0207e-12	1e-12	1.56133e-9	2.25522e-10
chr1	150513301	150513367	468362	0	+	0.484848	(0.455,0.49]	chr1	47414	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	5.16215	5.454355	5.74656	5.04348e-5	1.95355e-6	0.00113788	7.00948e-5
chr1	21850040	21850116	890920	0	-	0.736842	(0.59,1]	chr1	92366	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	4.58853	5.45429	6.32005	5.46127e-6	2.12246e-6	1.8199e-4	7.5146e-5
chr19	3369132	3369230	17201196	0	+	0.5	(0.49,0.53]	chr19	1413685	21	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.19883	5.4539349999999995	5.70904	6.30063e-5	2.30382e-6	0.00124286	8.86852e-5
chr5	32415041	32415114	6519511	0	-	0.493151	(0.49,0.53]	chr5	505033	2	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	4.54207	5.4531600000000005	6.36425	1.36824e-6	2.32873e-8	5.72609e-5	1.60638e-6
chr19	19528026	19528126	17264140	0	+	0.65	(0.59,1]	chr19	1426420	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	422	2	5.01415	5.4528	5.89145	8.8446e-9	5.8764100000000004e-12	7.615e-7	1.08303e-9
chr11	119025009	119025076	12626330	0	-	0.597015	(0.59,1]	chr11	979705	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.41325	5.452545	5.49184	3.01546e-4	1.61513e-4	0.00472028	0.00265627
chr19	10284946	10285028	17224641	0	+	0.609756	(0.59,1]	chr19	1418506	3	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.44236	5.452529999999999	5.4627	2.43542e-4	2.02004e-4	0.00399705	0.00317801
chr7	92606408	92606507	8924903	0	-	0.494949	(0.49,0.53]	chr7	681136	16	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	4.98392	5.45196	5.92	6.89283e-7	4.13969e-8	2.91313e-5	2.89671e-6
chr16	58718247	58718300	15967733	0	-	0.509434	(0.49,0.53]	chr16	1281428	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5:ENST00000496461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	5.08061	5.45139	5.82217	1.00361e-4	1.36598e-6	0.00196575	5.18684e-5
chr5	146240328	146240427	6279823	0	+	0.515152	(0.49,0.53]	chr5	489413	25	INTRON	INTRON	RP11-449H3.3:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.08061	5.45139	5.82217	1.00361e-4	1.36598e-6	0.00196575	5.18684e-5
chr11	119093109	119093183	12162027	0	+	0.554054	(0.53,0.59]	chr11	937745	1	CDS	CDS:UTR3:EXON_MRNA	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000542044.5:ENST00000544387.5:ENST00000543090.5:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648374.1:ENST00000544182.1:ENST00000539045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	106	2	4.28188	5.45101	6.62014	2.5044e-7	6.02789e-9	1.3784e-5	5.00481e-7
chr10	87505283	87505373	11173431	0	+	0.666667	(0.59,1]	chr10	849103	4	CDS	CDS:EXON_MRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.36203	5.4508600000000005	5.53969	3.74697e-4	1.29608e-4	0.00560631	0.00223885
chr9	96352037	96352109	10750578	0	-	0.458333	(0.455,0.49]	chr9	813810	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-240L7.5:SLC35D2	ENSG00000285269.2:ENSG00000130958.13	ENST00000643789.1:ENST00000650065.1:ENST00000253270.13:ENST00000375259.9:ENST00000490599.2:ENST00000482643.2:ENST00000375257.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	5.32759	5.450385	5.57318	1.92345e-5	6.11867e-6	5.18397e-4	1.83393e-4
chr9	125195429	125195527	10856204	0	-	0.571429	(0.53,0.59]	chr9	822378	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP76	ENSG00000235332.2	ENST00000444599.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	61	2	4.30776	5.450089999999999	6.59242	0.00407289	7.57932e-9	0.0324137	6.12104e-7
chr1	110897808	110897892	405620	0	+	0.416667	(0.39,0.42]	chr1	39835	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1:ENST00000464329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	213	2	4.2721	5.44984	6.62758	4.36937e-10	1e-12	5.04265e-8	2.46312e-10
chrX	123514672	123514772	18850545	0	+	0.53	(0.49,0.53]	chrX	1606058	3	EXON_PSEUDO	EXON_PSEUDO	H3P47	ENSG00000179101.5	ENST00000416267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	130	2	5.24438	5.44931	5.65424	4.21859e-9	1.06693e-10	4.00158e-7	1.43719e-8
chr10	31805593	31805691	11440485	0	-	0.357143	(0.33,0.36]	chr10	872250	3	UTR3	UTR3:EXON_MRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	4.23344	5.449285	6.6651300000000004	3.89541e-7	6.06303e-10	1.99913e-5	6.71305e-8
chrX	66260180	66260262	18718242	0	+	0.52439	(0.49,0.53]	chrX	1597064	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.67972	5.448885	6.21805	6.94757e-4	7.46967e-8	0.00876781	4.33833e-6
chr7	103510927	103511005	8963358	0	-	0.448718	(0.42,0.455]	chr7	686119	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	5.11218	5.447990000000001	5.7838	6.01815e-5	1.6512e-6	0.00130886	6.0825e-5
chr6	73372912	73373009	7795155	0	-	0.329897	(0.29,0.33]	chr6	597079	32	INTRON	INTRON	OOEP	ENSG00000203907.10	ENST00000370363.5:ENST00000441145.1	protein_coding	protein_coding	protein_coding	protein_coding	23	722	2	5.4298	5.447765	5.46573	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	21828029	21828090	890655	0	-	0.688525	(0.59,1]	chr1	92224	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	114	2	4.52435	5.44744	6.37053	6.54525e-6	2.4605e-6	1.94116e-4	9.40752e-5
chr10	50308064	50308148	11486534	0	-	0.5	(0.49,0.53]	chr10	876699	2	CDS	CDS:UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	5.43028	5.44651	5.46274	1.13094e-5	9.03974e-10	3.3464e-4	9.62406e-8
chr3	123130547	123130616	3706766	0	+	0.507246	(0.49,0.53]	chr3	316833	2	CDS	CDS:EXON_MRNA:INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000472319.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.4279	5.44642	6.46494	0.00196987	1.01442e-8	0.0193972	7.85427e-7
chr2	27215320	27215392	1691448	0	+	0.5	(0.49,0.53]	chr2	165620	1	CDS	CDS:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000405489.7:ENST00000419744.1:ENST00000491220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	84	2	5.36265	5.4455100000000005	5.52837	7.50805e-6	1.68866e-9	2.3779e-4	1.66802e-7
chrX	79361403	79361479	19130517	0	-	0.434211	(0.42,0.455]	chrX	1627053	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.54792	5.44511	6.3423	9.66045e-4	2.51668e-8	0.0115185	1.71825e-6
chr22	44150690	44150789	18390714	0	+	0.535354	(0.53,0.59]	chr22	1566013	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	PARVB:RP4-671O14.6	ENSG00000188677.15:ENSG00000280434.1	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1:ENST00000624919.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	88	2	5.19469	5.4444	5.69411	5.01544e-6	1.0578e-8	1.7067e-4	8.1539200000000005e-07
chrX	120455356	120455427	19196322	0	-	0.380282	(0.36,0.39]	chrX	1632009	1	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding	2	146	2	4.3741	5.4440100000000005	6.51392	4.74881e-6	1e-12	1.63715e-4	2.25522e-10
chr10	119172433	119172485	11717990	0	-	0.461538	(0.455,0.49]	chr10	893963	2	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.76048	5.443865000000001	6.12725	3.99985e-4	1.23635e-7	0.00588767	6.7072e-6
chr1	154378598	154378696	1302976	0	-	0.489796	(0.455,0.49]	chr1	131245	5	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:SS5_PROX:INTRON	RP11-350G8.4:RPSAP17	ENSG00000237920.2:ENSG00000226855.1	ENST00000449634.2:ENST00000437336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	2	89	2	4.32975	5.443849999999999	6.55795	1.27857e-7	3.59716e-9	7.7505e-6	3.19904e-7
chr6	31669351	31669429	7116082	0	+	0.538462	(0.53,0.59]	chr6	545971	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2:ENST00000409691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	107	2	4.46764	5.44376	6.41988	5.65391e-8	2.8743e-8	3.41755e-6	2.10359e-6
chr22	19963658	19963752	18296469	0	+	0.62766	(0.59,1]	chr22	1553002	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	COMT:MIR4761	ENSG00000093010.15:ENSG00000284031.1	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000678240.1:ENST00000677675.1:ENST00000585066.1:ENST00000493893.1:ENST00000678945.1:ENST00000677564.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	2	151	2	4.19092	5.44254	6.69416	1.87257e-6	3.55514e-7	6.8003e-5	1.85736e-5
chr17	8383125	8383213	16432872	0	-	0.602273	(0.59,1]	chr17	1340571	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-849F2.7:RPL26	ENSG00000263809.1:ENSG00000161970.15	ENST00000582471.1:ENST00000648839.1:ENST00000584164.6:ENST00000583011.6:ENST00000582556.5:ENST00000585176.1:ENST00000578812.5:ENST00000578115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	373	2	4.44135	5.442515	6.44368	5.75608e-8	6.84885e-12	3.83383e-6	1.24127e-9
chr5	7900154	7900251	5871368	0	+	0.309278	(0.29,0.33]	chr5	461598	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000506115.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	5.03124	5.442505000000001	5.85377	9.06368e-5	2.10378e-7	0.00167558	1.18923e-5
chr15	60404661	60404760	14962732	0	+	0.555556	(0.53,0.59]	chr15	1175923	3	EXON_PSEUDO	EXON_PSEUDO	RP11-745A24.2	ENSG00000242667.1	ENST00000477729.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	81	2	4.6384	5.442209999999999	6.24602	8.42977e-7	1.15746e-7	3.83773e-5	6.3314e-6
chr12	64720021	64720101	13378793	0	-	0.5125	(0.49,0.53]	chr12	1054201	1	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000537823.1:ENST00000540196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	4.66585	5.44195	6.21805	5.39247e-7	7.46967e-8	2.63471e-5	4.33833e-6
chr16	18797984	18798044	15877132	0	-	0.366667	(0.36,0.39]	chr16	1269316	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5:ENST00000567969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	239	2	4.51212	5.441660000000001	6.3712	2.37077e-12	1e-12	4.85684e-10	2.46312e-10
chr22	36265345	36265443	18360623	0	+	0.602041	(0.59,1]	chr22	1561192	3	CDS	CDS:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000397278.8:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.03834	5.44161	5.84488	0.00108238	4.10826e-5	0.0118355	9.68079e-4
chr1	28200762	28200859	912949	0	-	0.57732000000000006	(0.53,0.59]	chr1	95445	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.86823	5.4415700000000005	6.01491	4.35895e-4	6.18274e-7	0.00623608	2.65059e-5
chr14	67691139	67691191	14683489	0	-	0.480769	(0.455,0.49]	chr14	1149648	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	5.14774	5.44068	5.73362	7.45457e-5	1.35346e-6	0.00142165	5.67444e-5
chr2	61869496	61869553	2691336	0	-	0.473684	(0.455,0.49]	chr2	240533	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	5.14774	5.44068	5.73362	7.45457e-5	1.35346e-6	0.00142165	5.67444e-5
chr1	32668738	32668838	130288	0	+	0.51	(0.49,0.53]	chr1	16083	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000531983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	4.50393	5.44033	6.37673	3.34456e-8	1.47262e-8	2.18513e-6	1.18213e-6
chr8	47936434	47936517	9817190	0	-	0.46988	(0.455,0.49]	chr8	742877	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000535375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	5.24724	5.44028	5.63332	3.09759e-5	4.15159e-6	7.62166e-4	1.32627e-4
chr8	43130191	43130290	9308576	0	+	0.40404	(0.39,0.42]	chr8	712880	75	UTR3	UTR3:EXON_MRNA	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	4.39652	5.43999	6.48346	4.94619e-9	1.61258e-9	4.2017e-7	1.73353e-7
chr7	92614841	92614940	8924988	0	-	0.353535	(0.33,0.36]	chr7	681136	101	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	123	2	5.06177	5.43992	5.81807	1.11521e-10	1.09136e-11	1.65204e-8	1.88095e-9
chr1	54036658	54036718	1027223	0	-	0.416667	(0.39,0.42]	chr1	106608	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000470395.1:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	112	2	5.35147	5.439755	5.52804	1.02552e-9	2.96346e-10	1.16987e-7	3.5664e-8
chr2	219223945	219224022	3191327	0	-	0.584416	(0.53,0.59]	chr2	280881	2	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000429920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.66936	5.439675	6.20999	0.00103174	1.51461e-7	0.0121443	8.00634e-6
chr19	53874109	53874205	17388665	0	+	0.645833	(0.59,1]	chr19	1446781	6	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000391769.2:ENST00000391768.2	protein_coding	protein_coding	protein_coding	protein_coding	4	364	2	4.71514	5.439375	6.16361	5.41526e-9	1.1288e-10	4.56901e-7	1.66862e-8
chr16	85400537	85400637	15795323	0	+	0.47	(0.455,0.49]	chr16	1256986	412	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	187	2	4.78612	5.439220000000001	6.09232	2.17075e-7	1e-12	1.0861e-5	2.46312e-10
chr12	21654542	21654571	13236804	0	-	0.517241	(0.49,0.53]	chr12	1037980	1	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000470280.1:ENST00000450584.5:ENST00000539782.1:ENST00000544151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	5.4156	5.439170000000001	5.46274	1.84143e-5	1.13094e-5	4.53637e-4	3.3464e-4
chr7	55646380	55646475	8289093	0	+	0.505263	(0.49,0.53]	chr7	631304	9	EXON_PSEUDO	EXON_PSEUDO	TUBBP6	ENSG00000235207.1	ENST00000416519.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	42	2	5.4156	5.439170000000001	5.46274	1.84143e-5	1.13094e-5	4.53637e-4	3.3464e-4
chr10	119065398	119065484	11717507	0	-	0.44186	(0.42,0.455]	chr10	893838	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.20268	5.43877	5.67486	3.59669e-5	3.42598e-6	8.71318e-4	1.12506e-4
chr8	38212816	38212913	9292355	0	+	0.371134	(0.36,0.39]	chr8	710695	25	UTR3	UTR3:EXON_MRNA	BAG4	ENSG00000156735.11	ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.73346	5.438435	6.14341	3.2963e-4	7.63855e-8	0.00504024	4.42542e-6
chr17	42201540	42201638	16546634	0	-	0.44898	(0.42,0.455]	chr17	1357142	25	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	5	205	2	4.44208	5.4384250000000005	6.43477	4.37371e-10	1e-12	5.04432e-8	2.46312e-10
chr22	39018287	39018387	18368446	0	+	0.41	(0.39,0.42]	chr22	1562848	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	4.53831	5.438415	6.33852	1.30829e-6	2.05438e-8	5.53834e-5	1.43837e-6
chr19	49534192	49534259	17371106	0	+	0.761194	(0.59,1]	chr19	1443241	1	CDS	CDS:EXON_MRNA:INTRON	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000597801.1:ENST00000593644.1:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.7945	5.43841	6.08232	0.0031766	8.23309e-6	0.0279054	2.34786e-4
chr12	69601452	69601511	12943579	0	+	0.355932	(0.33,0.36]	chr12	1009026	1	UTR3	UTR3:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000550653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	95	2	5.27623	5.437645	5.59906	2.53179e-9	7.59217e-11	2.36872e-7	1.16775e-8
chrX	87704107	87704203	19141905	0	-	0.458333	(0.455,0.49]	chrX	1627927	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	162	2	4.33565	5.4374199999999995	6.53919	5.69287e-6	1e-12	1.88744e-4	2.25522e-10
chr17	65643761	65643861	16644430	0	-	0.39	(0.36,0.39]	chr17	1369048	23	INTRON	INTRON	CEP112	ENSG00000154240.17	ENST00000535342.7:ENST00000392769.6:ENST00000580694.5:ENST00000317442.12:ENST00000583466.5:ENST00000581739.5:ENST00000581734.5:ENST00000537949.5:ENST00000582795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.86603	5.43699	6.00795	1.68962e-4	2.19402e-7	0.00297945	1.09601e-5
chr3	33016708	33016774	4111137	0	-	0.424242	(0.42,0.455]	chr3	343439	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5:ENST00000467571.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	5.42869	5.43655	5.44441	1.60756e-5	8.23077e-6	4.07445e-4	2.56136e-4
chr12	120498072	120498110	13116605	0	+	0.421053	(0.42,0.455]	chr12	1023818	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000548342.5:ENST00000392508.2:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000552316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	4.30177	5.436155	6.57054	7.69083e-6	1.16955e-9	2.20857e-4	1.307e-7
chr1	99712104	99712163	1197374	0	-	0.40678	(0.39,0.42]	chr1	116850	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000489209.2:ENST00000492943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	5.00391	5.435685	5.86746	9.12714e-5	7.74696e-7	0.00182992	3.2172e-5
chr10	96528030	96528103	11640162	0	-	0.410959	(0.39,0.42]	chr10	886575	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	5.00391	5.435685	5.86746	9.12714e-5	7.74696e-7	0.00182992	3.2172e-5
chr20	57358618	57358705	18021337	0	-	0.390805	(0.39,0.42]	chr20	1527343	3	UTR3	UTR3:EXON_MRNA	MTRNR2L3	ENSG00000256222.3	ENST00000543500.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.00391	5.435685	5.86746	9.12714e-5	7.74696e-7	0.00182992	3.2172e-5
chr8	105486327	105486427	9544204	0	+	0.38	(0.36,0.39]	chr8	724742	347	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000520027.5:ENST00000524235.5:ENST00000511341.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	5.30023	5.434425	5.56862	1.38946e-5	4.90567e-6	3.94563e-4	1.526e-4
chr1	150751926	150752008	1290278	0	-	0.560976	(0.53,0.59]	chr1	128449	2	CDS	CDS:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1:ENST00000679582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.76633	5.434245	6.10216	6.98999e-4	3.17557e-7	0.00846751	1.68263e-5
chr12	124815037	124815114	13600530	0	-	0.519481	(0.49,0.53]	chr12	1071733	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	74	2	4.8063	5.43272	6.05914	1.96248e-7	1.86307e-7	1.07114e-5	9.99962e-6
chr12	56276050	56276143	13349886	0	-	0.462366	(0.455,0.49]	chr12	1051018	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000552331.1:ENST00000549221.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	96	2	3.76882	5.432245	7.09567	1.00626e-5	2.42271e-11	3.03291e-4	3.83676e-9
chr19	54181050	54181133	17627732	0	-	0.722892	(0.59,1]	chr19	1488029	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2:ENST00000414665.5:ENST00000453320.1:ENST00000464098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	182	2	3.71195	5.431369999999999	7.15079	7.06979e-6	9.69784e-9	2.27834e-4	7.56913e-7
chr19	4660668	4660750	17433097	0	-	0.585366	(0.53,0.59]	chr19	1455343	1	CDS	CDS:EXON_MRNA	MYDGF	ENSG00000074842.8	ENST00000599761.5:ENST00000262947.8:ENST00000599630.1:ENST00000596031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	123	2	5.06384	5.42956	5.79528	2.61912e-6	2.81543e-10	9.89086e-5	3.41179e-8
chr16	11243052	11243152	15542352	0	+	0.52	(0.49,0.53]	chr16	1231051	5	EXON_PSEUDO	EXON_PSEUDO	HNRNPCP4	ENSG00000263179.1	ENST00000571636.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	48	2	4.67972	5.42939	6.17906	6.94757e-4	1.01082e-7	0.00876781	5.6272e-6
chr17	63754432	63754518	16634749	0	-	0.360465	(0.36,0.39]	chr17	1367582	1	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	145	2	4.59395	5.428685	6.26342	1.25817e-8	1e-12	1.03382e-6	2.25522e-10
chr3	82323461	82323561	3584561	0	+	0.29	[0,0.29]	chr3	309798	1158	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.75921	5.427665	6.09612	2.77035e-4	5.83277e-8	0.00444204	3.51156e-6
chr12	131222726	131222826	13157390	0	+	0.56	(0.53,0.59]	chr12	1028200	52	INTRON	INTRON	LINC01257	ENSG00000204603.7	ENST00000536191.2	lncRNA	lncRNA	lncRNA	lncRNA	3	236	2	4.02165	5.427245	6.83284	1.81563e-6	1e-12	7.32965e-5	2.25522e-10
chr19	46787585	46787678	17595593	0	-	0.709677	(0.59,1]	chr19	1481428	3	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	6	582	2	5.18307	5.427075	5.67108	1.39616e-10	4.84213e-12	1.82092e-8	9.94483e-10
chr4	92496934	92497034	4968766	0	+	0.27	[0,0.29]	chr4	407030	1918	INTRON	INTRON	GRID2	ENSG00000152208.13	ENST00000282020.9:ENST00000505687.5:ENST00000510992.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.57416	5.4270700000000005	6.27998	6.75561e-4	1.22353e-8	0.00873562	9.19778e-7
chr17	44349425	44349488	16234891	0	+	0.619048	(0.59,1]	chr17	1314555	1	CDS	CDS:EXON_MRNA	GRN	ENSG00000030582.18	ENST00000588170.5:ENST00000589536.5:ENST00000587518.5:ENST00000587109.5:ENST00000588143.5:ENST00000593167.5:ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000592783.5:ENST00000591740.5:ENST00000592323.5:ENST00000589265.5:ENST00000587958.1:ENST00000586782.5:ENST00000639447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.39112	5.4269099999999995	5.4627	2.53595e-4	2.43542e-4	0.00399705	0.00381472
chr3	127621072	127621150	3723607	0	+	0.487179	(0.455,0.49]	chr3	318299	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000468414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	5.16215	5.4266	5.69105	5.04348e-5	2.83777e-6	0.00113788	9.62519e-5
chr9	112232098	112232168	10803011	0	-	0.457143	(0.455,0.49]	chr9	818439	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	2	111	2	5.17955	5.42647	5.67339	2.05982e-6	5.17137e-11	8.10246e-5	7.56478e-9
chr9	137477933	137478033	10895330	0	-	0.67	(0.59,1]	chr9	828854	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PNPLA7	ENSG00000130653.16	ENST00000406427.6:ENST00000277531.8:ENST00000469998.1:ENST00000492278.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.9413	5.426159999999999	5.91102	0.00191468	2.06903e-5	0.0190905	4.99825e-4
chrX	55452842	55452934	18705659	0	+	0.521739	(0.49,0.53]	chrX	1596429	5	CDS	CDS:EXON_MRNA	MAGEH1	ENSG00000187601.5	ENST00000342972.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.55929	5.426145	6.293	0.00116196	4.1349e-8	0.0130851	2.61265e-6
chr2	60734985	60735076	2685796	0	-	0.461538	(0.455,0.49]	chr2	239742	2	EXON_PSEUDO	EXON_PSEUDO	ATP1B3P1	ENSG00000271707.1	ENST00000605365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	40	2	5.37609	5.42604	5.47599	2.05373e-5	7.64978e-6	4.97369e-4	2.4151e-4
chr19	45687617	45687652	17590096	0	-	0.514286	(0.49,0.53]	chr19	1480427	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	SNRPD2	ENSG00000125743.11	ENST00000342669.8:ENST00000585392.2:ENST00000587367.5:ENST00000588301.5:ENST00000391932.7:ENST00000588599.5:ENST00000590212.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	5.03381	5.42592	5.81803	1.49689e-4	1.08721e-6	0.0024973	4.73591e-5
chr1	182336000	182336083	592603	0	+	0.518072	(0.49,0.53]	chr1	61223	1	EXON_PSEUDO	EXON_PSEUDO	EIF1P3	ENSG00000231684.3	ENST00000423841.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	77	2	4.14824	5.425835	6.70343	2.04708e-5	1.29474e-9	5.45523e-4	1.3204e-7
chr3	52706792	52706879	3479510	0	+	0.425287	(0.42,0.455]	chr3	305082	1	CDS	CDS:EXON_MRNA	SPCS1	ENSG00000114902.14	ENST00000423431.5:ENST00000233025.11:ENST00000619898.5:ENST00000448693.2:ENST00000474945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	90	2	3.97694	5.424885	6.87283	2.22686e-6	2.43554e-10	8.65681e-5	2.99724e-8
chr22	19968831	19968926	18296526	0	+	0.484211	(0.455,0.49]	chr22	1553022	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	207	2	4.12242	5.42482	6.72722	5.56989e-8	1e-12	3.71931e-6	2.25522e-10
chr17	82396356	82396450	16712767	0	-	0.382979	(0.36,0.39]	chr17	1378620	15	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	5.0994	5.4243950000000005	5.74939	4.68763e-5	1.44783e-6	0.00107286	5.46137e-5
chr11	119028255	119028355	12626373	0	-	0.55	(0.53,0.59]	chr11	979726	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6:ENST00000525787.1:ENST00000534384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	4.5672	5.424189999999999	6.28118	1.40998e-6	8.87941e-8	5.86085e-5	5.04867e-6
chr7	100093082	100093133	8949616	0	-	0.529412	(0.49,0.53]	chr7	683498	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	MCM7:MIR25	ENSG00000166508.18:ENSG00000207547.1	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000384816.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	73	2	4.50546	5.423055	6.34065	1.89933e-6	1.98867e-8	6.87959e-5	1.52826e-6
chr5	163491552	163491649	6343789	0	+	0.371134	(0.36,0.39]	chr5	494110	5	UTR3	UTR3:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000353866.7:ENST00000393915.9:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	4.88159	5.42305	5.96451	1.13061e-7	9.07455e-8	6.97642e-6	5.13369e-6
chr11	62627288	62627353	12409720	0	-	0.492308	(0.49,0.53]	chr11	961247	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	223	2	4.36711	5.42304	6.47897	8.27624e-10	1e-12	9.7008e-8	2.25522e-10
chr10	87790309	87790369	11608242	0	-	0.383333	(0.36,0.39]	chr10	884067	1	CDS	CDS:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1:ENST00000495903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.98743	5.422935	5.85844	8.82225e-5	6.66729e-7	0.00178337	2.83187e-5
chr11	74976943	74977043	12021556	0	+	0.41	(0.39,0.42]	chr11	926807	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	214	2	5.14581	5.4225449999999995	5.69928	2.35667e-12	1e-12	4.83079e-10	2.46312e-10
chr16	571160	571260	15483054	0	+	0.6	(0.59,1]	chr16	1224706	4	SS5_PROX	SS5_PROX:INTRON	PIGQ:LA16c-407A10.3	ENSG00000007541.17:ENSG00000282907.1	ENST00000293874.2:ENST00000409527.6:ENST00000409439.6:ENST00000635107.1:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	61	2	4.82325	5.421775	6.0203	0.002381	1.68221e-5	0.0216895	4.64895e-4
chr5	177065794	177065893	6404781	0	+	0.474747	(0.455,0.49]	chr5	497766	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000511834.5:ENST00000503039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	4.67428	5.42138	6.16848	4.63488e-7	8.97995e-8	2.31256e-5	5.08654e-6
chr17	35709223	35709308	16207350	0	+	0.423529	(0.42,0.455]	chr17	1309131	1	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	5.11218	5.42127	5.73036	6.01815e-5	2.37045e-6	0.00130886	8.28831e-5
chr19	30692656	30692756	17288942	0	+	0.57	(0.53,0.59]	chr19	1428584	1347	INTRON	INTRON	ZNF536	ENSG00000198597.9	ENST00000592773.2	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.95825	5.421025	5.8838	2.87508e-4	1.51824e-6	0.00457439	5.67784e-5
chr1	148171558	148171658	457143	0	+	0.4	(0.39,0.42]	chr1	45544	71	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	5.16347	5.421015000000001	5.67856	6.48089e-5	1.29189e-6	0.00126536	5.48279e-5
chr1	21833540	21833614	890729	0	-	0.635135	(0.59,1]	chr1	92268	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	156	2	3.61569	5.420755	7.22582	6.53412e-5	5.69647e-9	0.00139607	4.79122e-7
chr21	34096667	34096765	18104983	0	+	0.489796	(0.455,0.49]	chr21	1534981	15	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	71	2	4.88923	5.420680000000001	5.95213	2.72823e-7	9.45747e-8	1.4763e-5	5.31584e-6
chr20	32161275	32161365	17752591	0	+	0.466667	(0.455,0.49]	chr20	1498533	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1:ENST00000479591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	4.22226	5.420485	6.61871	1.23185e-5	2.11003e-9	3.58356e-4	2.02462e-7
chr7	103561882	103561953	8963893	0	-	0.549296	(0.53,0.59]	chr7	686208	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.86823	5.420375	5.97252	4.35895e-4	8.30115e-7	0.00623608	3.4056e-5
chr16	15564189	15564288	15565199	0	+	0.353535	(0.33,0.36]	chr16	1232473	274	INTRON	INTRON	BMERB1	ENSG00000166780.11	ENST00000566490.5:ENST00000570249.5:ENST00000561813.5:ENST00000300006.9:ENST00000567550.1:ENST00000452191.6:ENST00000564389.5:ENST00000561692.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.33896	5.419905	6.50085	0.00182033	2.75564e-9	0.0183913	2.54269e-7
chr1	202307134	202307229	663763	0	+	0.578947	(0.53,0.59]	chr1	66761	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LGR6	ENSG00000133067.18	ENST00000367278.8:ENST00000255432.11:ENST00000487787.5:ENST00000439764.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.5586	5.4198900000000005	6.28118	0.00161229	8.87941e-8	0.0169168	5.04867e-6
chr20	37517914	37518013	17962209	0	-	0.363636	(0.36,0.39]	chr20	1522201	6	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	5.36191	5.4192	5.47649	1.79406e-5	4.3709e-6	4.45904e-4	1.52262e-4
chr10	100548934	100549034	11220768	0	+	0.53	(0.49,0.53]	chr10	854069	9	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	2	138	2	4.73676	5.41758	6.0984	3.38109e-7	1e-12	1.5857e-5	2.46312e-10
chr7	155309444	155309543	8632668	0	+	0.363636	(0.36,0.39]	chr7	659289	12	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	4.01457	5.416895	6.81922	1.68925e-7	2.03018e-10	9.90709e-6	2.54873e-8
chrX	9569140	9569240	18567788	0	+	0.48	(0.455,0.49]	chrX	1586476	82	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	4.17407	5.41663	6.65919	1.754e-5	6.68159e-10	4.38078e-4	8.04847e-8
chr1	61441277	61441374	231625	0	+	0.536082	(0.53,0.59]	chr1	27307	14	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	5.03705	5.4161649999999995	5.79528	0.00020199200000000001	2.61912e-6	0.00317801	9.89086e-5
chr20	57282809	57282903	17836405	0	+	0.574468	(0.53,0.59]	chr20	1508186	7	EXON_LNCRNA	EXON_LNCRNA	RP4-813D12.3	ENSG00000226308.1	ENST00000412321.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	5.04298	5.416125	5.78927	1.91383e-4	2.83401e-6	0.0032874	9.62519e-5
chr6	30688660	30688760	7658945	0	-	0.62	(0.59,1]	chr6	584180	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.10346	5.415925	5.72839	8.40506e-4	7.24021e-5	0.00981548	0.0015254
chr19	36150110	36150177	17308844	0	+	0.626866	(0.59,1]	chr19	1432257	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000588815.5:ENST00000629983.2:ENST00000590049.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	3	180	2	3.67941	5.4151	7.15079	8.61507e-6	9.69784e-9	2.66665e-4	7.56913e-7
chr22	31620995	31621068	18473637	0	-	0.684932	(0.59,1]	chr22	1576733	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PISD:MIR7109	ENSG00000241878.11:ENSG00000284082.1	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000613748.1:ENST00000422020.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	0	62	2	4.7151	5.414685	6.11427	0.00412279	6.89731e-6	0.0325842	0.00020353099999999999
chr8	21982639	21982725	9221887	0	+	0.546512	(0.53,0.59]	chr8	704967	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	4.93883	5.414325	5.88982	1.39814e-6	8.67024e-8	5.82056e-5	4.94425e-6
chr11	62626570	62626627	12409708	0	-	0.45614	(0.455,0.49]	chr11	961237	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5:ENST00000531563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	321	2	5.40321	5.414194999999999	5.42518	3.22609e-12	1e-12	6.9183e-10	2.25522e-10
chr16	85145533	85145632	15792967	0	+	0.545455	(0.53,0.59]	chr16	1256948	12	INTRON	INTRON	LINC02139	ENSG00000278214.1	ENST00000612023.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.77222	5.414155	6.05609	6.67251e-4	4.62627e-7	0.00867533	2.06661e-5
chr14	39091034	39091101	14242943	0	+	0.373134	(0.36,0.39]	chr14	1114605	3	EXON_PSEUDO	EXON_PSEUDO	RP11-545M17.2	ENSG00000259121.2	ENST00000554037.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	52	2	4.24194	5.413679999999999	6.58542	0.00276729	1.78594e-9	0.0247437	1.7523e-7
chr22	35424353	35424451	18359641	0	+	0.663265	(0.59,1]	chr22	1561065	2	UTR3	UTR3:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.19648	5.413665	5.63085	7.35336e-4	8.43355e-5	0.00921643	0.0015859
chr1	20652910	20652971	882251	0	-	0.508197	(0.49,0.53]	chr1	91118	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000475210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	177	2	4.45834	5.413349999999999	6.36836	4.55418e-8	1e-12	3.14461e-6	2.25522e-10
chr15	34090385	34090455	15202842	0	-	0.385714	(0.36,0.39]	chr15	1196598	2	CDS	CDS:EXON_MRNA	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.39105	5.412599999999999	5.43415	1.15393e-5	7.73826e-6	3.09736e-4	2.43421e-4
chr5	171863119	171863217	6978854	0	-	0.336735	(0.33,0.36]	chr5	533363	17	UTR3	UTR3:EXON_MRNA	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	5.33344	5.412185	5.49093	1.82386e-5	3.50796e-6	4.52248e-4	1.26658e-4
chr1	21838824	21838911	890789	0	-	0.678161	(0.59,1]	chr1	92294	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	4.25966	5.41195	6.56424	2.95373e-5	7.86684e-7	6.69635e-4	3.61693e-5
chr11	125611427	125611519	12194444	0	+	0.423913	(0.42,0.455]	chr11	940768	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	403	2	4.24025	5.41168	6.58311	2.38017e-9	1e-12	2.43226e-7	2.25522e-10
chr19	10284782	10284864	17224639	0	+	0.597561	(0.59,1]	chr19	1418506	1	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.97722	5.4110499999999995	5.84488	4.10826e-5	3.8584e-7	9.68079e-4	1.76611e-5
chr14	67690309	67690409	14683479	0	-	0.46	(0.455,0.49]	chr14	1149645	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	4.57352	5.41054	6.24756	4.80845e-8	1.47696e-8	2.97443e-6	1.18379e-6
chr1	230995834	230995909	751397	0	+	0.386667	(0.36,0.39]	chr1	76375	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	4.67715	5.41028	6.14341	4.639e-7	7.63855e-8	2.31256e-5	4.42542e-6
chr14	94062399	94062489	14775261	0	-	0.477778	(0.455,0.49]	chr14	1157302	3	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	5.24724	5.410209999999999	5.57318	3.09759e-5	6.11867e-6	7.62166e-4	1.83393e-4
chr11	65131522	65131596	12421679	0	-	0.513514	(0.49,0.53]	chr11	963757	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	5.0551	5.40983	5.76456	1.57714e-6	2.55273e-8	6.4504e-5	1.73844e-6
chr1	149886164	149886259	1287105	0	-	0.6	(0.59,1]	chr1	127851	19	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	3	181	2	4.12447	5.409314999999999	6.69416	3.90119e-7	3.55514e-7	1.85736e-5	1.78429e-5
chr9	136007531	136007631	10887744	0	-	0.58	(0.53,0.59]	chr9	826878	11	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	4.27526	5.40831	6.54136	1.03921e-5	1.08352e-8	2.85526e-4	9.15897e-7
chr4	869565	869663	5276278	0	-	0.479592	(0.455,0.49]	chr4	424387	10	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	151	2	4.98533	5.407715	5.8301	2.74728e-10	1.56882e-11	3.69499e-8	2.60884e-9
chr7	106093011	106093075	8977635	0	-	0.359375	(0.33,0.36]	chr7	687027	2	CDS	CDS:UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1:ENST00000460770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	168	2	5.00331	5.4069199999999995	5.81053	2.12314e-10	1e-12	2.93687e-8	2.25522e-10
chr11	71435565	71435665	12444402	0	-	0.65	(0.59,1]	chr11	966973	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	369	2	5.09369	5.4069	5.72011	2.02274e-9	4.65746e-10	1.95376e-7	5.87095e-8
chr5	132194925	132195022	6833474	0	-	0.587629	(0.53,0.59]	chr5	522678	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000474628.1:ENST00000428369.6:ENST00000467587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	4.36133	5.40628	6.45123	5.91026e-6	2.24134e-8	1.77972e-4	1.68827e-6
chr1	15604953	15605043	69367	0	+	0.522222	(0.49,0.53]	chr1	7744	5	EXON_PSEUDO	EXON_PSEUDO	CHCHD2P6	ENSG00000235084.3	ENST00000454346.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	43	2	4.99034	5.406255	5.82217	1.6002e-4	1.36598e-6	0.00286408	5.18684e-5
chr14	100734610	100734703	14489607	0	+	0.612903	(0.59,1]	chr14	1132123	6	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	11	1084	2	4.58659	5.40604	6.22549	6.07193e-10	1e-12	7.41241e-8	2.25522e-10
chr5	179836493	179836575	6415301	0	+	0.560976	(0.53,0.59]	chr5	499338	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	5.17106	5.405894999999999	5.64073	7.00135e-6	1.2921e-8	2.25852e-4	9.66948e-7
chr20	59001516	59001568	18026146	0	-	0.634615	(0.59,1]	chr20	1527951	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	84	2	3.98751	5.4056	6.82369	0.0301044	9.07221e-8	0.129773	5.13369e-6
chr19	50650197	50650297	17376864	0	+	0.58	(0.53,0.59]	chr19	1444764	4	SS5_PROX	SS5_PROX:INTRON	C19orf81	ENSG00000235034.7	ENST00000425202.6:ENST00000458538.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.16383	5.40559	6.64735	0.00659193	4.80744e-9	0.0454205	4.10382e-7
chr19	14765730	14765804	17482525	0	-	0.581081	(0.53,0.59]	chr19	1464822	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	5.12301	5.4055599999999995	5.68811	1.2852e-4	5.40688e-6	0.00241206	1.64762e-4
chr8	97805408	97805464	9506749	0	+	0.410714	(0.39,0.42]	chr8	722738	2	CDS	CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.89218	5.404705	5.91723	1.6518e-4	5.41457e-7	0.0029267300000000002	2.37407e-5
chr22	39022917	39023014	18368495	0	+	0.536082	(0.53,0.59]	chr22	1562858	2	CDS	CDS:EXON_MRNA:INTRON	CTA-150C2.22:APOBEC3D	ENSG00000284554.2:ENSG00000243811.12	ENST00000381568.9:ENST00000427494.6:ENST00000216099.13:ENST00000622217.3	protein_coding	protein_coding	protein_coding	protein_coding	2	109	2	3.70393	5.404615	7.1053	1.64739e-5	8.57402e-11	4.57148e-4	1.18534e-8
chr6	26123713	26123804	7647052	0	-	0.516484	(0.49,0.53]	chr6	582518	2	CDS	CDS:EXON_MRNA	H2BC4	ENSG00000180596.7	ENST00000314332.5:ENST00000396984.1	protein_coding	protein_coding	protein_coding	protein_coding	5	246	2	5.21125	5.403645	5.59604	1.49558e-12	1e-12	3.21889e-10	2.46312e-10
chr17	76558965	76559063	16359134	0	+	0.326531	(0.29,0.33]	chr17	1328569	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000591956.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000587743.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	32	2	5.38398	5.40303	5.42208	1.15499e-5	5.31413e-6	3.09736e-4	1.7831e-4
chr19	58547375	58547443	17413315	0	+	0.529412	(0.49,0.53]	chr19	1451186	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597618.5:ENST00000597423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	4.30878	5.402889999999999	6.497	7.12421e-6	7.74861e-9	2.28404e-4	6.22462e-7
chr3	128069950	128070046	3725190	0	+	0.510417	(0.49,0.53]	chr3	318515	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	4.93605	5.402815	5.86958	7.54524e-7	6.89689e-8	3.49213e-5	4.06041e-6
chr7	100627743	100627820	8952233	0	-	0.545455	(0.53,0.59]	chr7	684166	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	4.24099	5.40257	6.56415	1.28258e-5	9.5574e-9	3.70041e-4	7.4729e-7
chr2	27201987	27202074	2569375	0	-	0.54023	(0.53,0.59]	chr2	231192	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6:ENST00000408041.5:ENST00000461319.5:ENST00000481751.5:ENST00000492069.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.66348	5.4023	6.14112	0.00107799	2.39342e-7	0.0118238	1.32863e-5
chr1	180190506	180190580	582847	0	+	0.554054	(0.53,0.59]	chr1	60568	2	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.399	5.401985	5.40497	3.02387e-5	2.83308e-5	7.12614e-4	6.78876e-4
chr13	99559362	99559448	13865621	0	+	0.372093	(0.36,0.39]	chr13	1087231	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	4.51875	5.40028	6.28181	1.56348e-6	7.29293e-9	5.82084e-5	6.48212e-7
chr7	6469595	6469674	8664747	0	-	0.481013	(0.455,0.49]	chr7	662838	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1:ENST00000382267.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	260	2	4.80748	5.4002099999999995	5.99294	1.67288e-12	1e-12	3.87814e-10	2.25522e-10
chr8	25389232	25389332	9235741	0	+	0.58	(0.53,0.59]	chr8	707235	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	3.39416	5.399755	7.40535	0.00126006	4.97868e-12	0.013837	9.3677e-10
chr15	65572300	65572366	14980114	0	+	0.227273	[0,0.29]	chr15	1177594	2	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.25517	5.3993649999999995	5.54356	2.33041e-5	2.29995e-6	5.51886e-4	8.86852e-5
chr19	12939495	12939563	17238348	0	+	0.588235	(0.53,0.59]	chr19	1421047	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000587486.6:ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000590325.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	379	2	5.37253	5.399325	5.42612	7.80664e-12	1e-12	1.52392e-9	2.25522e-10
chr12	57750710	57750765	13357764	0	-	0.490909	(0.49,0.53]	chr12	1053021	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5:ENST00000551800.5:ENST00000552254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	5.08061	5.39891	5.71721	1.00361e-4	2.77472e-6	0.00196575	9.47025e-5
chr14	69453240	69453309	14373398	0	+	0.521739	(0.49,0.53]	chr14	1123161	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A9	ENSG00000029364.12	ENST00000556125.5:ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	5.08061	5.39891	5.71721	1.00361e-4	2.77472e-6	0.00196575	9.47025e-5
chr13	29517644	29517717	13945255	0	-	0.438356	(0.42,0.455]	chr13	1094566	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	5.36824	5.398465	5.42869	1.60756e-5	1.33083e-5	4.07445e-4	3.81624e-4
chr1	203699631	203699717	669454	0	+	0.476744	(0.455,0.49]	chr1	67406	3	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	5.06282	5.39822	5.73362	1.16789e-4	1.35346e-6	0.0020505	5.67444e-5
chr5	132203747	132203847	6833568	0	-	0.48	(0.455,0.49]	chr5	522700	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	5.16215	5.397735	5.63332	5.04348e-5	4.15159e-6	0.00113788	1.32627e-4
chr5	22451113	22451213	6495092	0	-	0.42	(0.39,0.42]	chr5	503956	454	INTRON	INTRON	CDH12	ENSG00000154162.15	ENST00000382254.6:ENST00000504376.6:ENST00000520668.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.49324	5.39738	6.30152	0.00108192	2.78542e-8	0.0124943	1.87494e-6
chr14	75176354	75176416	14709500	0	-	0.709677	(0.59,1]	chr14	1152561	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000555873.1:ENST00000555085.1:ENST00000622441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.28284	5.39668	5.51052	4.04404e-4	0.00019737500000000001	0.00550292	0.00336487
chr4	120060117	120060217	5621464	0	-	0.39	(0.36,0.39]	chr4	448080	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000512484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.30503	5.395995	6.48696	7.76959e-6	4.29503e-9	2.43892e-4	3.74054e-7
chr3	187074158	187074245	3960045	0	+	0.402299	(0.39,0.42]	chr3	334028	1	CDS	CDS:UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	3.93679	5.39592	6.85505	3.23284e-6	2.10746e-10	1.18341e-4	2.63404e-8
chr8	144406829	144406928	10148776	0	-	0.484848	(0.455,0.49]	chr8	763657	48	INTRON	INTRON	CPSF1	ENSG00000071894.17	ENST00000616140.2:ENST00000620219.4:ENST00000531042.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.20189	5.39527	6.58865	0.00397662	2.75015e-9	0.0322851	2.54234e-7
chr19	53873725	53873821	17388661	0	+	0.604167	(0.59,1]	chr19	1446781	2	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000651087.1:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000448420.5:ENST00000391769.2:ENST00000391768.2:ENST00000414489.1	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	4.49787	5.39513	6.29239	9.22386e-6	2.49631e-6	2.83868e-4	8.6736e-5
chr4	22727470	22727566	5356439	0	-	0.510417	(0.49,0.53]	chr4	429643	2	EXON_PSEUDO	EXON_PSEUDO	CDC42P6	ENSG00000237350.1	ENST00000421246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	41	2	5.24579	5.394845	5.5439	4.073e-5	8.44877e-6	9.64741e-4	2.39255e-4
chr6	26158269	26158359	7101293	0	+	0.522222	(0.49,0.53]	chr6	542809	1	CDS	CDS:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2:ENST00000377777.5	protein_coding	protein_coding	protein_coding	protein_coding	9	362	2	4.33405	5.39461	6.45517	2.67286e-11	1e-12	4.18919e-9	2.46312e-10
chr19	18175039	18175130	17257684	0	+	0.549451	(0.53,0.59]	chr19	1425235	1	CDS	CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000597802.2:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	189	2	5.36096	5.393625	5.42629	2.43109e-9	8.14993e-12	2.47944e-7	1.45099e-9
chr2	219251040	219251139	3191525	0	-	0.555556	(0.53,0.59]	chr2	280988	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2:ENST00000427737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.77222	5.393565000000001	6.01491	6.67251e-4	6.18274e-7	0.00867533	2.65059e-5
chr9	35060312	35060383	10638099	0	-	0.507042	(0.49,0.53]	chr9	804511	1	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	4.77195	5.39299	6.01403	2.61944e-7	2.57118e-7	1.42854e-5	1.25706e-5
chr3	41239187	41239242	3432624	0	+	0.581818	(0.53,0.59]	chr3	298579	2	CDS	CDS:UTR3:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	4.37211	5.392975	6.41384	5.43864e-6	3.18937e-8	1.81467e-4	2.10263e-6
chr9	128917842	128917940	10481911	0	+	0.387755	(0.36,0.39]	chr9	790907	16	UTR3	UTR3:EXON_MRNA	LRRC8A	ENSG00000136802.12	ENST00000372600.9:ENST00000372599.7:ENST00000259324.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.73081	5.39267	6.05453	2.98719e-7	1.53427e-7	1.60273e-5	8.08703e-6
chr3	33132627	33132700	3397716	0	+	0.575342	(0.53,0.59]	chr3	295495	2	CDS	CDS:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.30776	5.391805	6.47585	0.00407289	1.951e-8	0.0324137	1.37715e-6
chr3	13378911	13378980	4046851	0	-	0.492754	(0.49,0.53]	chr3	339690	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	84	2	3.76099	5.39179	7.02259	2.00194e-4	6.80801e-11	0.0034021	9.67098e-9
chr1	77166774	77166830	1109967	0	-	0.446429	(0.42,0.455]	chr1	111561	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5:ENST00000359130.1:ENST00000478391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.80064	5.39018	5.97972	3.0479e-4	4.13864e-7	0.00472028	1.88179e-5
chrX	55014746	55014835	19084612	0	-	0.617977	(0.59,1]	chrX	1623743	1	CDS	CDS:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	5.22051	5.38866	5.55681	1.60495e-4	7.46464e-8	0.00286914	4.33833e-6
chr12	52897527	52897618	13336912	0	-	0.692308	(0.59,1]	chr12	1048602	1	CDS	CDS:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.97015	5.3886199999999995	5.80709	0.00140057	4.94887e-5	0.0144327	0.00112479
chr13	97976631	97976692	13858789	0	+	0.721311	(0.59,1]	chr13	1086586	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000460070.6:ENST00000651721.2:ENST00000261574.10:ENST00000481455.6:ENST00000471898.5:ENST00000463157.6:ENST00000490369.6:ENST00000493281.6:ENST00000489058.6:ENST00000481689.6:ENST00000480611.6:ENST00000485433.6:ENST00000496368.6:ENST00000421861.7:ENST00000357602.7:ENST00000631030.1:ENST00000475420.5:ENST00000480641.2:ENST00000490680.5:ENST00000497270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.7945	5.38825	5.982	0.0031766	1.42041e-5	0.0279054	3.66887e-4
chr2	117825446	117825522	2021815	0	+	0.407895	(0.39,0.42]	chr2	191099	1	CDS	CDS:EXON_MRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000415038.1:ENST00000476149.1:ENST00000461443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	4.59191	5.388175	6.18444	8.64688e-7	7.14249e-8	3.91779e-5	4.18382e-6
chrX	48459535	48459587	19062738	0	-	0.557692	(0.53,0.59]	chrX	1620380	1	CDS	CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4:ENST00000480105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	141	2	5.14702	5.38808	5.62914	1.58171e-8	2.11459e-10	1.14917e-6	2.93086e-8
chr1	89104670	89104767	1157277	0	-	0.360825	(0.36,0.39]	chr1	114225	5	EXON_PSEUDO	EXON_PSEUDO	PTGES3P1	ENSG00000234518.2	ENST00000439531.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.86603	5.38802	5.91001	1.68962e-4	4.5726e-7	0.00297945	2.05025e-5
chr1	11970742	11970816	45462	0	+	0.581081	(0.53,0.59]	chr1	5800	2	CDS	CDS:EXON_MRNA:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	91	2	5.37103	5.388	5.40497	2.83308e-5	2.29476e-9	7.12614e-4	2.17437e-7
chr7	137882555	137882628	9097100	0	-	0.589041	(0.53,0.59]	chr7	694038	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	5.37103	5.388	5.40497	2.83308e-5	2.29476e-9	7.12614e-4	2.17437e-7
chr1	201135762	201135815	1446499	0	-	0.641509	(0.59,1]	chr1	145190	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	157	2	4.5987	5.38769	6.17668	7.29392e-6	1.21903e-7	2.3256e-4	6.64633e-6
chr9	71589849	71589933	10298259	0	+	0.464286	(0.455,0.49]	chr9	775564	4	EXON_PSEUDO	EXON_PSEUDO	RPL35AP21	ENSG00000229814.1	ENST00000437667.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	41	2	4.97525	5.38763	5.80001	1.38474e-4	1.35407e-6	0.00254294	5.16241e-5
chr1	20654222	20654296	882268	0	-	0.635135	(0.59,1]	chr1	91128	1	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	2	148	2	3.82158	5.3872800000000005	6.95298	2.09567e-5	3.81194e-8	5.57049e-4	2.44336e-6
chr5	75347203	75347256	6037012	0	+	0.396226	(0.39,0.42]	chr5	473607	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	120	2	4.83358	5.387005	5.94043	1.20779e-7	4.56346e-12	7.40241e-6	8.6953e-10
chr2	105361182	105361282	2821369	0	-	0.42	(0.39,0.42]	chr2	251840	36	UTR3	UTR3:EXON_MRNA	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	4.84764	5.38661	5.92558	2.00458e-7	1.2868e-7	1.13771e-5	6.93987e-6
chr11	32933937	32934037	11899066	0	+	0.41	(0.39,0.42]	chr11	909001	23	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	5.16347	5.386525000000001	5.60958	6.48089e-5	2.11003e-6	0.00126536	8.25026e-5
chr3	72929593	72929692	3555318	0	+	0.474747	(0.455,0.49]	chr3	308959	1	INTRON	INTRON	GXYLT2	ENSG00000172986.13	ENST00000389617.9:ENST00000498315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.32759	5.386205	5.44482	1.92345e-5	1.36044e-5	5.18397e-4	3.54469e-4
chr15	50227078	50227178	14925601	0	+	0.38	(0.36,0.39]	chr15	1173442	2	CDS	CDS:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8:ENST00000544960.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.20331	5.385965000000001	5.56862	2.53222e-5	4.90567e-6	6.51851e-4	1.526e-4
chr3	156544366	156544439	4538678	0	-	0.342466	(0.33,0.36]	chr3	376083	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	356	2	5.01665	5.38516	5.75367	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	56588464	56588545	9344582	0	+	0.518519	(0.49,0.53]	chr8	714709	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL37P6	ENSG00000241431.1	ENST00000464216.1:ENST00000460682.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	58	2	4.12263	5.385015	6.6474	0.00591451	2.1237e-9	0.0427941	2.03271e-7
chr16	3191537	3191637	15497134	0	+	0.51	(0.49,0.53]	chr16	1228504	2	SS5_PROX	SS5_PROX:INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	43	1779	2	5.30582	5.384365	5.46291	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	113319468	113319562	13908374	0	+	0.680851	(0.59,1]	chr13	1090347	1	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.00945	5.383545	5.75764	0.00149725	4.53637e-5	0.0159607	9.4617e-4
chr9	35062283	35062350	10638126	0	-	0.507463	(0.49,0.53]	chr9	804525	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.84744	5.383395	5.91935	3.70203e-4	5.27035e-7	0.00515475	2.57927e-5
chr12	46364643	46364702	13314349	0	-	0.40678	(0.39,0.42]	chr12	1043603	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000612232.1:ENST00000548236.5:ENST00000552414.1:ENST00000548870.5:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	106	2	5.26712	5.38309	5.49906	3.45202e-9	2.3066e-10	3.09496e-7	3.16323e-8
chr14	45955710	45955810	14269561	0	+	0.41	(0.39,0.42]	chr14	1115744	143	INTRON	INTRON	LINC00871	ENSG00000258700.6	ENST00000666179.1:ENST00000664642.1:ENST00000555246.5	lncRNA	lncRNA	lncRNA	lncRNA	2	83	2	3.93679	5.383035	6.82928	3.23284e-6	2.68628e-10	1.18341e-4	3.26662e-8
chr2	70088133	70088230	1878482	0	+	0.628866	(0.59,1]	chr2	177396	4	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.85874	5.38219	6.90564	1.44531e-5	9.29604e-8	3.72961e-4	5.86968e-6
chr1	19242408	19242473	877391	0	-	0.538462	(0.53,0.59]	chr1	90523	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	4.44255	5.38205	6.32155	3.41603e-6	6.18792e-8	1.12474e-4	4.08886e-6
chr1	116400860	116400933	423920	0	+	0.493151	(0.49,0.53]	chr1	41837	1	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1	protein_coding	protein_coding	protein_coding	protein_coding	12	452	2	4.86475	5.381945	5.89914	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	11845707	11845789	9699214	0	-	0.609756	(0.59,1]	chr8	734807	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	492	2	5.2191	5.38172	5.54434	1.0345e-7	1.21902e-12	6.46555e-6	2.68325e-10
chr19	41114592	41114692	17333058	0	+	0.47	(0.455,0.49]	chr19	1436449	1	SS5_PROX	SS5_PROX:INTRON	CYP2F1	ENSG00000197446.9	ENST00000331105.7:ENST00000532164.2:ENST00000531409.5:ENST00000526093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	5.07172	5.381385	5.69105	8.3067e-5	2.83777e-6	0.00171126	9.62519e-5
chr4	109463272	109463365	5039097	0	+	0.44086	(0.42,0.455]	chr4	409917	5	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	5.0485	5.381385	5.71427	1.33053e-6	2.60143e-8	5.6008e-5	1.76574e-6
chr19	40376608	40376691	17328722	0	+	0.674699	(0.59,1]	chr19	1435579	1	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000488311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	248	2	4.63181	5.38129	6.13077	4.23414e-6	8.49749e-11	1.4819e-4	1.17878e-8
chrX	66266505	66266572	18718307	0	+	0.492537	(0.49,0.53]	chrX	1597076	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.99034	5.38049	5.77064	1.6002e-4	1.94063e-6	0.00286408	6.9799e-5
chr15	89155366	89155450	15093034	0	+	0.488095	(0.455,0.49]	chr15	1187057	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	4.53206	5.38009	6.22812	3.0313e-8	2.46504e-8	2.20766e-6	1.68927e-6
chr11	60069573	60069624	11961705	0	+	0.490196	(0.49,0.53]	chr11	915689	1	CDS	CDS:UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	4.54207	5.38006	6.21805	1.36824e-6	7.46967e-8	5.72609e-5	4.33833e-6
chr1	160350104	160350177	496714	0	+	0.479452	(0.455,0.49]	chr1	53454	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000467837.5:ENST00000459963.5:ENST00000424645.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	4.67428	5.37954	6.0848	4.63488e-7	1.71103e-7	2.31256e-5	8.87341e-6
chr11	62633101	62633183	12409791	0	-	0.560976	(0.53,0.59]	chr11	961290	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000526732.5:ENST00000534422.5:ENST00000534613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	5.11707	5.3789	5.64073	1.35965e-4	7.00135e-6	0.00231202	2.25852e-4
chr19	3605537	3605636	17427986	0	-	0.474747	(0.455,0.49]	chr19	1454174	45	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.24724	5.3788350000000005	5.51043	3.09759e-5	9.08728e-6	7.62166e-4	2.53877e-4
chr10	73763855	73763919	11115787	0	+	0.46875	(0.455,0.49]	chr10	845871	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.76048	5.37823	5.99598	3.99985e-4	3.33072e-7	0.00588767	1.56608e-5
chr11	5254441	5254475	12240612	0	-	0.588235	(0.53,0.59]	chr11	946080	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	CTD-2643I7.4:HBG2:CTD-2643I7.5	ENSG00000284931.1:ENSG00000196565.15:ENSG00000239920.2	ENST00000642908.1:ENST00000647543.1:ENST00000336906.6:ENST00000380252.6:ENST00000444587.1:ENST00000380259.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	82	3956	2	4.96342	5.377890000000001	5.79236	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	181422875	181422975	588625	0	+	0.41	(0.39,0.42]	chr1	60918	89	INTRON	INTRON	CACNA1E	ENSG00000198216.12	ENST00000524607.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.14886	5.376765	6.60467	0.00415881	2.09314e-9	0.0325842	2.01229e-7
chr3	186783528	186783610	3958207	0	+	0.585366	(0.53,0.59]	chr3	333837	5	UTR5	UTR5:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000441007.5:ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000491473.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	417	2	5.32727	5.376695	5.42612	7.80664e-12	1e-12	1.52392e-9	2.25522e-10
chrX	153796433	153796492	18916190	0	+	0.627119	(0.59,1]	chrX	1611448	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471724.5:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	189	2	4.38181	5.37617	6.37053	2.4605e-6	6.37716e-8	9.40752e-5	3.80147e-6
chr6	109116090	109116190	7325242	0	+	0.17	[0,0.29]	chr6	562900	96	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.85267	5.375954999999999	5.89924	2.14908e-4	1.43969e-7	0.00332687	8.58934e-6
chr17	44350745	44350800	16234914	0	+	0.581818	(0.53,0.59]	chr17	1314571	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000588237.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1:ENST00000586443.1:ENST00000589923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	102	2	4.39672	5.3759	6.35508	1.01252e-7	4.77539e-8	5.63487e-6	3.2714e-6
chr7	66987777	66987876	8837422	0	-	0.30303	(0.29,0.33]	chr7	674997	2	UTR3	UTR3:EXON_MRNA	SBDS	ENSG00000126524.10	ENST00000246868.7:ENST00000414306.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	4.62631	5.375685000000001	6.12506	6.57711e-7	2.06649e-8	2.80312e-5	1.58157e-6
chr1	21841192	21841285	890814	0	-	0.688172	(0.59,1]	chr1	92308	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	4.73465	5.3754349999999995	6.01622	1.18141e-5	2.2876e-6	3.14877e-4	8.86852e-5
chr15	78499019	78499116	15040141	0	+	0.309278	(0.29,0.33]	chr15	1183144	10	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	5.0833	5.375245	5.66719	4.57622e-5	1.7577e-6	0.00105479	6.42329e-5
chr6	30724105	30724201	7112219	0	+	0.552083	(0.53,0.59]	chr6	545065	9	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	1065	2	5.25135	5.374465000000001	5.49758	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	159919660	159919747	1326686	0	-	0.517241	(0.49,0.53]	chr1	135587	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	122	2	5.29639	5.374264999999999	5.45214	2.62366e-9	7.3714e-10	2.65594e-7	7.9868e-8
chr19	3605930	3606029	17427990	0	-	0.434343	(0.42,0.455]	chr19	1454174	49	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.86038	5.374175	5.88797	3.34791e-4	3.72505e-7	0.00472923	1.92638e-5
chr18	9396279	9396356	16753293	0	+	0.454545	(0.42,0.455]	chr18	1381527	1	CDS	CDS:UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.67981	5.3741699999999994	6.06853	5.38444e-4	2.14495e-7	0.00744072	1.07721e-5
chr9	133363660	133363728	10880450	0	-	0.441176	(0.42,0.455]	chr9	825843	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	144	2	4.45249	5.374085	6.29568	2.45559e-6	1e-12	9.39733e-5	2.25522e-10
chr15	28315977	28316059	14838075	0	+	0.390244	(0.39,0.42]	chr15	1164300	5	EXON_PSEUDO	EXON_PSEUDO	RPL41P2	ENSG00000256338.2	ENST00000544920.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	76	2	5.36755	5.3739349999999995	5.38032	9.82886e-6	1.36603e-9	2.98194e-4	1.38582e-7
chr1	45514571	45514637	978331	0	-	0.439394	(0.42,0.455]	chr1	103091	2	CDS	CDS:EXON_MRNA	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	7	291	2	5.11135	5.37351	5.63567	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	319837	319937	12225820	0	-	0.55	(0.53,0.59]	chr11	943137	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000680920.1:ENST00000679793.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	313	2	4.92534	5.37341	5.82148	5.47451e-12	1e-12	1.02063e-9	2.46312e-10
chr12	113384850	113384946	13101698	0	+	0.614583	(0.59,1]	chr12	1022426	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.2538	5.37282	5.49184	5.85045e-4	1.61513e-4	0.00793559	0.00265627
chr17	82237420	82237515	16382688	0	+	0.673684	(0.59,1]	chr17	1332454	4	CDS	CDS:EXON_MRNA:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000578684.6:ENST00000577650.6:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.2538	5.37282	5.49184	5.85045e-4	1.61513e-4	0.00793559	0.00265627
chr17	82237704	82237798	16382691	0	+	0.62766	(0.59,1]	chr17	1332454	7	CDS	CDS:EXON_MRNA:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000578684.6:ENST00000577650.6:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.28284	5.37277	5.4627	4.04404e-4	2.43542e-4	0.00550292	0.00399705
chr17	7579809	7579895	16105709	0	+	0.534884	(0.53,0.59]	chr17	1296984	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	47	2	4.77222	5.37237	5.97252	6.67251e-4	8.30115e-7	0.00867533	3.4056e-5
chr6	160073902	160073975	7528637	0	+	0.575342	(0.53,0.59]	chr6	574895	3	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000487607.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.77222	5.37237	5.97252	6.67251e-4	8.30115e-7	0.00867533	3.4056e-5
chr3	23917098	23917196	3358530	0	+	0.581633	(0.53,0.59]	chr3	294123	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	36	1843	2	5.07583	5.372275	5.66872	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	153637129	153637225	478349	0	+	0.333333	(0.33,0.36]	chr1	49151	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	5.25308	5.372005	5.49093	2.94355e-5	3.50796e-6	6.67979e-4	1.26658e-4
chr1	25284572	25284665	103584	0	+	0.591398	(0.59,1]	chr1	12132	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	4.89857	5.371725	5.84488	0.00182139	4.10826e-5	0.0176016	9.68079e-4
chr6	27139408	27139464	7104157	0	+	0.642857	(0.59,1]	chr6	543288	1	CDS	CDS:EXON_MRNA	H4C9	ENSG00000276180.1	ENST00000615353.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.89857	5.371725	5.84488	0.00182139	4.10826e-5	0.0176016	9.68079e-4
chr16	2519383	2519401	15493404	0	+	0.5	(0.49,0.53]	chr16	1227531	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.03381	5.371425	5.70904	1.49689e-4	2.30382e-6	0.0024973	8.86852e-5
chrX	153797457	153797532	18916202	0	+	0.533333	(0.53,0.59]	chrX	1611450	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471724.5:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	276	2	5.01684	5.3711199999999995	5.7254	1.912e-11	1e-12	3.39597e-9	2.25522e-10
chr7	75981047	75981109	8342130	0	+	0.5	(0.49,0.53]	chr7	636164	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000439963.5:ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	4.87263	5.371105	5.86958	7.54524e-7	1.15551e-7	3.49213e-5	6.3314e-6
chr17	78174858	78174935	16693275	0	-	0.623377	(0.59,1]	chr17	1375300	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.86139	5.370955	6.88052	2.54973e-4	6.21413e-8	0.00417441	3.71551e-6
chr4	114676578	114676675	5063674	0	+	0.412371	(0.39,0.42]	chr4	411417	4	UTR3	UTR3:EXON_MRNA	UGT8	ENSG00000174607.11	ENST00000310836.11:ENST00000394511.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.55723	5.370945	6.18466	0.00117753	2.37277e-8	0.0127276	1.77828e-6
chr8	11850876	11850976	9699279	0	-	0.55	(0.53,0.59]	chr8	734840	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000525315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	249	2	4.82631	5.37065	5.91499	2.46238e-9	1e-12	2.5089e-7	2.25522e-10
chr7	92614146	92614246	8924981	0	-	0.28	[0,0.29]	chr7	681136	94	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	8	199	2	4.88172	5.36918	5.85664	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	17077618	17077641	12295058	0	-	0.652174	(0.59,1]	chr11	950311	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1:ENST00000527571.1:ENST00000534329.1:ENST00000528074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	364	2	5.21348	5.36916	5.52484	1.25976e-8	1.0929e-10	1.03472e-6	1.46651e-8
chr11	27890633	27890733	12317025	0	-	0.48	(0.455,0.49]	chr11	952778	19	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	121	2	3.35267	5.3689350000000005	7.3852	6.07597e-6	1.28197e-12	1.99765e-4	2.80764e-10
chr6	36095886	36095986	7132483	0	+	0.32	(0.29,0.33]	chr6	549248	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	5.21836	5.3688649999999996	5.51937	3.15783e-5	2.69449e-6	7.02218e-4	1.01443e-4
chr9	137805135	137805234	10517975	0	+	0.525253	(0.49,0.53]	chr9	797705	14	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	5.32179	5.368695000000001	5.4156	2.63311e-5	1.84143e-5	6.73425e-4	4.53637e-4
chr19	3368837	3368935	17201193	0	+	0.479592	(0.455,0.49]	chr19	1413685	18	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.06282	5.368105	5.67339	1.16789e-4	2.05982e-6	0.0020505	8.10246e-5
chr17	17816289	17816373	16465715	0	-	0.654762	(0.59,1]	chr17	1344704	2	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000447641.5:ENST00000490796.1:ENST00000584760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.22549	5.368005	5.51052	5.13843e-4	0.00019737500000000001	0.00665221	0.00336487
chr9	87730451	87730522	10347583	0	+	0.338028	(0.33,0.36]	chr9	778733	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	5.19876	5.36792	5.53708	2.37278e-5	2.0019e-10	6.1689e-4	2.51594e-8
chr5	76733006	76733105	6044920	0	+	0.474747	(0.455,0.49]	chr5	474229	8	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.16215	5.367665	5.57318	5.04348e-5	6.11867e-6	0.00113788	1.83393e-4
chr1	91720145	91720230	1164374	0	-	0.6	(0.59,1]	chr1	114930	4	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000529608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	111	2	4.74792	5.3674	5.98688	2.00143e-5	1.6813e-6	5.35199e-4	6.18007e-5
chr18	12724540	12724640	16763565	0	+	0.38	(0.36,0.39]	chr18	1382692	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11:ENST00000588824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	5.30023	5.36719	5.43415	1.38946e-5	1.15393e-5	3.94563e-4	3.09736e-4
chr12	129110988	129111085	13153746	0	+	0.628866	(0.59,1]	chr12	1027739	15	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5:ENST00000508925.6	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	110	2	4.18569	5.366685	6.54768	5.09234e-5	5.34464e-7	0.00114531	2.34665e-5
chr3	142673596	142673673	3791028	0	+	0.571429	(0.53,0.59]	chr3	323578	1	EXON_SMALL	EXON_SMALL:INTRON	PLS1:RN7SKP25	ENSG00000120756.13:ENSG00000199319.1	ENST00000457734.7:ENST00000476044.5:ENST00000337777.7:ENST00000497002.1:ENST00000362449.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	0	43	2	5.26491	5.366265	5.46762	6.31437e-5	1.97761e-5	0.00124286	5.29643e-4
chr11	14507710	14507766	12282082	0	-	0.321429	(0.29,0.33]	chr11	949702	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	5.0361	5.36617	5.69624	7.29486e-7	2.13226e-8	3.41021e-5	1.48722e-6
chr11	5301296	5301387	12241099	0	-	0.285714	[0,0.29]	chr11	946134	3	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	75	2	4.9124	5.365295	5.81819	2.80285e-7	5.09846e-10	1.51316e-5	5.76958e-8
chr3	40761544	40761629	3431059	0	+	0.529412	(0.49,0.53]	chr3	298456	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-761N21.1:RP11-761N21.2	ENSG00000231873.2:ENSG00000234287.1	ENST00000665970.1:ENST00000457554.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	93	2	4.50393	5.365295	6.22666	5.03459e-8	3.34456e-8	3.41647e-6	2.18513e-6
chr12	123294807	123294907	13595066	0	-	0.31	(0.29,0.33]	chr12	1070977	58	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	4.66801	5.36494	6.06187	3.62101e-8	5.85883e-9	2.57694e-6	4.90413e-7
chr1	111454210	111454283	407283	0	+	0.520548	(0.49,0.53]	chr1	40169	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	121	2	5.24236	5.36492	5.48748	5.00789e-9	4.34871e-10	4.24791e-7	5.52176e-8
chrX	48528357	48528457	18691858	0	+	0.55	(0.53,0.59]	chrX	1594149	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	179	2	5.16436	5.36462	5.56488	3.98789e-10	1.03869e-10	4.63767e-8	1.55189e-8
chr14	30886139	30886225	14201265	0	+	0.44186	(0.42,0.455]	chr14	1112913	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	5.35997	5.364105	5.36824	2.41298e-5	1.33083e-5	5.6648e-4	3.81624e-4
chr20	1277956	1278056	17646618	0	+	0.48	(0.455,0.49]	chr20	1491668	108	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.54174	5.363685	6.18563	0.00130137	4.30535e-8	0.0136936	2.9886e-6
chr6	27890551	27890621	7649654	0	-	0.528571	(0.49,0.53]	chr6	582837	2	CDS	CDS:EXON_MRNA	H3C12	ENSG00000197153.5	ENST00000359303.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	5.19883	5.3636	5.52837	6.30063e-5	7.50805e-6	0.00124286	2.3779e-4
chr1	161171815	161171915	1332759	0	-	0.63	(0.59,1]	chr1	136718	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	B4GALT3	ENSG00000158850.15	ENST00000319769.10:ENST00000622395.4:ENST00000470882.5:ENST00000367998.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.00945	5.363025	5.7166	0.00149725	5.56053e-5	0.0159607	0.0011271
chr1	150511456	150511549	468339	0	+	0.645161	(0.59,1]	chr1	47402	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.03834	5.362855	5.68737	0.00108238	8.79466e-5	0.0118355	0.00178337
chr1	38709518	38709616	144544	0	+	0.520408	(0.49,0.53]	chr1	18021	7	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	350	2	4.99195	5.3628149999999994	5.73368	3.82097e-11	1e-12	6.36949e-9	2.25522e-10
chr9	91904881	91904981	10734849	0	-	0.51	(0.49,0.53]	chr9	812027	178	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	4.58452	5.361750000000001	6.13898	9.98532e-7	1.37435e-7	4.42534e-5	7.34618e-6
chr11	14507655	14507710	12282081	0	-	0.472727	(0.455,0.49]	chr11	949702	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.87186	5.361705	5.85155	2.33781e-4	9.4476e-7	0.00385436	3.80876e-5
chr3	10312654	10312730	4032412	0	-	0.592105	(0.59,1]	chr3	338599	2	CDS	CDS:EXON_MRNA	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000482647.5:ENST00000431352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.13679	5.36139	5.58599	9.28022e-4	1.04372e-4	0.0111748	0.00186841
chr4	869859	869957	5276281	0	-	0.510204	(0.49,0.53]	chr4	424387	13	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	4.90469	5.36136	5.81803	1.08721e-6	8.91237e-8	4.73591e-5	5.05835e-6
chr19	48329351	48329377	17365249	0	+	0.692308	(0.59,1]	chr19	1441700	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1:ENST00000597057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.16576	5.361285	5.55681	6.55716e-4	1.60495e-4	0.0080931	0.00286914
chr1	110873055	110873147	405364	0	+	0.478261	(0.455,0.49]	chr1	39794	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.97525	5.360905	5.74656	1.38474e-4	1.95355e-6	0.00254294	7.00948e-5
chr11	14486366	14486435	12281854	0	-	0.463768	(0.455,0.49]	chr11	949651	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.97525	5.360905	5.74656	1.38474e-4	1.95355e-6	0.00254294	7.00948e-5
chr4	43899156	43899253	4815729	0	+	0.463918	(0.455,0.49]	chr4	397226	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-663P9.3:NDUFB4P12	ENSG00000286891.1:ENSG00000124399.4	ENST00000655512.1:ENST00000513465.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	40	2	4.97525	5.360905	5.74656	1.38474e-4	1.95355e-6	0.00254294	7.00948e-5
chr12	49272252	49272349	12865710	0	+	0.56701	(0.53,0.59]	chr12	999063	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	350	2	5.06379	5.36081	5.65783	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	21876316	21876405	891231	0	-	0.629214	(0.59,1]	chr1	92523	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	225	2	2.47837	5.360605	8.24284	0.00970721	2.33447e-12	0.0608296	4.7909e-10
chr5	137345359	137345459	6854256	0	-	0.52	(0.49,0.53]	chr5	524352	319	INTRON	INTRON	SPOCK1	ENSG00000152377.14	ENST00000394945.6:ENST00000510689.5:ENST00000505690.1:ENST00000503916.1:ENST00000509293.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.4279	5.36045	6.293	0.00196987	4.1349e-8	0.0193972	2.61265e-6
chr6	170658528	170658628	7556970	0	+	0.58	(0.53,0.59]	chr6	576995	181	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	5.19288	5.36027	5.52766	9.22873e-5	1.38993e-5	0.0016906	3.94563e-4
chr19	35258944	35259004	17304013	0	+	0.583333	(0.53,0.59]	chr19	1430661	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	5.19883	5.360255	5.52168	8.7034e-5	1.48967e-5	0.00177086	3.81697e-4
chr11	1757400	1757478	12230465	0	-	0.602564	(0.59,1]	chr11	944396	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000677300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	232	2	4.79301	5.359674999999999	5.92634	1.60221e-6	4.20336e-10	6.53758e-5	4.8704e-8
chr11	1996095	1996187	12230709	0	-	0.619565	(0.59,1]	chr11	944462	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	H19	ENSG00000130600.19	ENST00000414790.6:ENST00000412788.5:ENST00000439725.5:ENST00000411861.5:ENST00000417089.6:ENST00000431095.7:ENST00000442037.5:ENST00000428066.6:ENST00000436715.5:ENST00000447298.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	217	2	5.28836	5.358495	5.42863	6.4828e-8	1.72185e-8	4.26483e-6	1.24091e-6
chr11	125618466	125618561	12194523	0	+	0.494737	(0.49,0.53]	chr11	940794	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	256	2	5.03931	5.357635	5.67596	6.83523e-11	1e-12	1.06227e-8	2.25522e-10
chr3	100748342	100748436	3637800	0	+	0.510638	(0.49,0.53]	chr3	311887	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	140	2	4.01955	5.357365	6.69518	5.99753e-9	9.10937e-10	5.00105e-7	1.0553e-7
chr1	179917647	179917745	580799	0	+	0.489796	(0.455,0.49]	chr1	60265	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000474875.5:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	4.58536	5.356305	6.12725	9.22269e-7	1.23635e-7	4.12764e-5	6.7072e-6
chr11	82859976	82860046	12499460	0	-	0.357143	(0.33,0.36]	chr11	971467	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5:ENST00000533126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	5.19876	5.3558900000000005	5.51302	2.37278e-5	2.54705e-10	6.1689e-4	3.10706e-8
chr5	132207707	132207795	6833609	0	-	0.5	(0.49,0.53]	chr5	522710	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.79086	5.35543	5.92	4.20783e-4	6.89283e-7	0.00611538	2.91313e-5
chr16	14853936	14854026	15560802	0	+	0.488889	(0.455,0.49]	chr16	1231929	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOMO1	ENSG00000103512.15	ENST00000287667.12:ENST00000620755.4:ENST00000610363.4:ENST00000566883.5:ENST00000566917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.76048	5.3549500000000005	5.94942	3.99985e-4	4.68666e-7	0.00588767	2.08717e-5
chr3	14133738	14133809	3319403	0	+	0.521127	(0.49,0.53]	chr3	292071	1	CDS	CDS:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	5.16557	5.354735	5.5439	6.36135e-5	8.44877e-6	0.00136069	2.39255e-4
chr3	77321024	77321124	3574262	0	+	0.37	(0.36,0.39]	chr3	309352	2223	INTRON	INTRON	ROBO2	ENSG00000185008.17	ENST00000487694.7:ENST00000602589.5:ENST00000461745.5:ENST00000332191.12:ENST00000473767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.93381	5.354485	5.77516	1.90009e-4	5.05798e-7	0.00302753	2.49522e-5
chr14	58794935	58795029	14315542	0	+	0.329787	(0.29,0.33]	chr14	1119032	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01500:RP11-112J1.1	ENSG00000258583.7:ENSG00000213598.4	ENST00000648996.1:ENST00000480540.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	35	2	4.80322	5.35352	5.90382	2.14303e-4	3.10438e-7	0.00359478	1.47195e-5
chr3	48600974	48601046	4168721	0	-	0.569444	(0.53,0.59]	chr3	349586	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000415995.5:ENST00000460105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.86823	5.35277	5.8373100000000004	4.35895e-4	2.06883e-6	0.00623608	7.35008e-5
chr1	226379141	226379207	1533207	0	-	0.484848	(0.455,0.49]	chr1	153464	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	5.07172	5.35252	5.63332	8.3067e-5	4.15159e-6	0.00171126	1.32627e-4
chr7	92614642	92614742	8924986	0	-	0.39	(0.36,0.39]	chr7	681136	99	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	147	2	4.59155	5.352205	6.11286	6.78628e-10	1e-12	7.415e-8	2.46312e-10
chr11	32931742	32931841	11899044	0	+	0.515152	(0.49,0.53]	chr11	909001	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5:ENST00000528155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	4.73676	5.3521149999999995	5.96747	3.70439e-7	3.38109e-7	1.92378e-5	1.5857e-5
chr1	34982043	34982119	936089	0	-	0.539474	(0.53,0.59]	chr1	98340	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-244H3.5:RP11-244H3.4:TMEM35B	ENSG00000284773.1:ENSG00000271741.1:ENSG00000243749.1	ENST00000417456.1:ENST00000487874.1:ENST00000373337.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	5.11707	5.351185	5.5853	1.35965e-4	9.83355e-6	0.00231202	2.98194e-4
chr2	239915588	239915688	3244904	0	-	0.41	(0.39,0.42]	chr2	285963	22	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.42584	5.351185	6.27653	0.00199429	1.06521e-8	0.0189001	9.02974e-7
chr16	33989482	33989571	15924683	0	-	0.58427	(0.53,0.59]	chr16	1276956	1	EXON_PSEUDO	EXON_PSEUDO	BCAP31P1	ENSG00000261217.2	ENST00000565437.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	43	2	5.12301	5.35116	5.57931	1.2852e-4	1.05602e-5	0.00241206	2.89015e-4
chr1	30737603	30737699	915599	0	-	0.4375	(0.42,0.455]	chr1	95874	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	185	2	5.33973	5.350865000000001	5.362	8.46134e-12	5.75384e-12	1.49848e-9	1.15894e-9
chr12	7141241	7141322	12717285	0	+	0.54321	(0.53,0.59]	chr12	987691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000544584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.77222	5.35053	5.92884	6.67251e-4	1.11987e-6	0.00867533	4.4003e-5
chr2	127996349	127996420	2870113	0	-	0.577465	(0.53,0.59]	chr2	256628	1	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.77222	5.35053	5.92884	6.67251e-4	1.11987e-6	0.00867533	4.4003e-5
chr16	68191316	68191408	15714918	0	+	0.413043	(0.39,0.42]	chr16	1251034	7	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	4.64359	5.3503	6.05701	5.75571e-7	1.91744e-7	2.76816e-5	9.81202e-6
chr21	43565338	43565428	18135370	0	+	0.555556	(0.53,0.59]	chr21	1538159	1	CDS	CDS:EXON_MRNA	H2BS1	ENSG00000234289.6	ENST00000599962.2	protein_coding	protein_coding	protein_coding	protein_coding	5	257	2	3.95775	5.35002	6.74229	5.42868e-8	1e-12	3.31693e-6	2.46312e-10
chr10	104315373	104315469	11678454	0	-	0.625	(0.59,1]	chr10	891073	10	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.9413	5.34947	5.75764	0.00191468	4.53637e-5	0.0190905	9.4617e-4
chr19	49542552	49542652	17371193	0	+	0.65	(0.59,1]	chr19	1443259	1	CDS	CDS:EXON_MRNA:INTRON	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000598833.1:ENST00000593483.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.9413	5.34947	5.75764	0.00191468	4.53637e-5	0.0190905	9.4617e-4
chr9	137243359	137243456	10515408	0	+	0.639175	(0.59,1]	chr9	797249	10	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	150	2	3.48719	5.349155	7.21112	1.28347e-4	6.32561e-9	0.00241206	5.20277e-7
chr17	38755882	38755936	16217803	0	+	0.574074	(0.53,0.59]	chr17	1310743	1	CDS	CDS:EXON_MRNA	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.95233	5.348955	5.74558	3.02711e-4	3.61407e-6	0.00439897	1.29307e-4
chr10	70883949	70884048	11562569	0	-	0.535354	(0.53,0.59]	chr10	879860	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PCBD1	ENSG00000166228.9	ENST00000493961.5:ENST00000299299.4:ENST00000493228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.95825	5.34891	5.73957	2.87508e-4	3.90343e-6	0.00457439	1.26306e-4
chr13	98021735	98021822	13859282	0	+	0.574713	(0.53,0.59]	chr13	1086745	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.95825	5.34891	5.73957	2.87508e-4	3.90343e-6	0.00457439	1.26306e-4
chr19	35746707	35746747	17306634	0	+	0.575	(0.53,0.59]	chr19	1431506	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PSENEN:AC002398.9	ENSG00000205155.8:ENSG00000188223.9	ENST00000591949.1:ENST00000222266.2:ENST00000587708.7:ENST00000591613.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.95825	5.34891	5.73957	2.87508e-4	3.90343e-6	0.00457439	1.26306e-4
chr4	22594280	22594365	4753593	0	+	0.423529	(0.42,0.455]	chr4	393436	2	EXON_PSEUDO	EXON_PSEUDO	RP11-10G12.1	ENSG00000244538.1	ENST00000480875.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	5.20268	5.34848	5.49428	3.59669e-5	1.07978e-5	8.71318e-4	2.9314e-4
chr1	45514506	45514571	978330	0	-	0.507692	(0.49,0.53]	chr1	103091	1	CDS	CDS:EXON_MRNA	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	5	251	2	5.12793	5.3484300000000005	5.56893	8.14312e-11	1e-12	1.24606e-8	2.25522e-10
chr18	9396356	9396433	16753294	0	+	0.467532	(0.455,0.49]	chr18	1381527	2	CDS	CDS:UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.20189	5.348205	6.49452	0.00397662	6.22217e-9	0.0322851	5.13192e-7
chr2	43995947	43996036	2624072	0	-	0.685393	(0.59,1]	chr2	236306	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.2538	5.3480799999999995	5.44236	5.85045e-4	2.02004e-4	0.00793559	0.00317801
chr13	36971976	36972036	13968822	0	-	0.366667	(0.36,0.39]	chr13	1095997	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.73346	5.346635	5.95981	3.2963e-4	3.15714e-7	0.00504024	1.49311e-5
chr6	75258848	75258917	7800358	0	-	0.376812	(0.36,0.39]	chr6	597654	2	CDS	CDS:UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.42503	5.346135	6.26724	0.00133228	2.79819e-8	0.0144372	1.8758e-6
chr1	38710792	38710890	144557	0	+	0.459184	(0.455,0.49]	chr1	18021	20	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	92	2	3.3605	5.3461300000000005	7.33176	0.00147278	2.23332e-12	0.0157578	4.62988e-10
chr10	80509385	80509471	11151933	0	+	0.511628	(0.49,0.53]	chr10	847904	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.67972	5.34567	6.01162	6.94757e-4	3.55916e-7	0.00876781	1.64926e-5
chr11	33710125	33710225	12344214	0	-	0.47	(0.455,0.49]	chr11	953995	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	222	2	5.21061	5.345305	5.48	1.36691e-12	1.26577e-12	3.25182e-10	2.77563e-10
chr11	125604156	125604247	12194362	0	+	0.516484	(0.49,0.53]	chr11	940738	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526213.5:ENST00000527456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	177	2	3.39612	5.3453	7.29448	6.80085e-8	2.64955e-12	4.02151e-6	5.82546e-10
chr2	208239070	208239151	3142450	0	-	0.432099	(0.42,0.455]	chr2	277688	1	CDS	CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000484575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	5.01562	5.34524	5.67486	1.01971e-4	3.42598e-6	0.0019861	1.12506e-4
chr2	61878868	61878939	2691441	0	-	0.422535	(0.42,0.455]	chr2	240571	1	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	4.64877	5.34499	6.04121	5.54135e-7	1.9198e-12	2.69297e-5	4.03484e-10
chr15	42236319	42236419	15239098	0	-	0.52	(0.49,0.53]	chr15	1200223	1	CDS	CDS:UTR3:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000566014.1:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	4.46303	5.344844999999999	6.22666	2.57025e-6	5.03459e-8	8.8687100000000007e-05	3.41647e-6
chr19	54174319	54174408	17627660	0	-	0.696629	(0.59,1]	chr19	1488017	3	CDS	CDS:UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	213	2	3.42178	5.3446549999999995	7.26753	4.39313e-6	8.22018e-9	1.39589e-4	7.18399e-7
chr20	45907691	45907755	17987731	0	-	0.640625	(0.59,1]	chr20	1524215	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.19648	5.3441600000000005	5.49184	7.35336e-4	1.61513e-4	0.00921643	0.00265627
chr7	119658867	119658967	9031635	0	-	0.36	(0.33,0.36]	chr7	689719	1584	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	3	115	2	4.90843	5.34335	5.77827	5.90221e-10	1.01905e-11	6.54537e-8	1.94031e-9
chr11	809964	809966	11758906	0	+	0	[0,0.29]	chr11	898469	1	EXON_LNCRNA	EXON_LNCRNA	RPLP2	ENSG00000177600.9	ENST00000532004.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	46	2	5.18779	5.34246	5.49713	5.03778e-6	8.31066e-9	1.5587e-4	7.24186e-7
chr6	26204800	26204856	7101591	0	+	0.517857	(0.49,0.53]	chr6	542856	2	CDS	CDS:EXON_MRNA	H4C5	ENSG00000276966.2	ENST00000615164.2	protein_coding	protein_coding	protein_coding	protein_coding	4	182	2	4.67876	5.34146	6.00416	3.14958e-10	3.11817e-12	4.17161e-8	6.20225e-10
chr8	123015446	123015546	10055910	0	-	0.6	(0.59,1]	chr8	756438	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	112	2	3.8973	5.340905	6.78451	2.15122e-4	1.17453e-7	0.00360503	6.41673e-6
chrY	13282745	13282844	19355262	0	-	0.565657	(0.53,0.59]	chrY	1646772	220	INTRON	INTRON	UTY	ENSG00000183878.16	ENST00000682216.1:ENST00000684226.1:ENST00000682112.1:ENST00000682761.1:ENST00000331397.8:ENST00000545955.6:ENST00000382896.9:ENST00000682913.1:ENST00000537580.6:ENST00000538878.6:ENST00000540140.6:ENST00000612274.5:ENST00000617789.5:ENST00000618474.5:ENST00000624098.3	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	21	1188	2	3.89538	5.340865	6.78635	8.21505e-11	1e-12	1.25615e-8	2.25522e-10
chr21	34843099	34843199	18227295	0	-	0.4	(0.39,0.42]	chr21	1546914	81	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.44975	5.340535	6.23132	2.67778e-6	1.58426e-8	9.19863e-5	1.25869e-6
chr12	53665413	53665428	13340966	0	-	0.466667	(0.455,0.49]	chr12	1049269	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	4.88923	5.34033	5.79143	8.96581e-7	9.45747e-8	4.03386e-5	5.31584e-6
chr7	30922563	30922644	8206196	0	+	0.54321	(0.53,0.59]	chr7	626032	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000482461.1:ENST00000409899.5:ENST00000409611.1:ENST00000651610.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.87884	5.339725	6.80061	1.11478e-4	1.30714e-9	0.00213212	1.32956e-7
chr18	26170818	26170911	17046294	0	-	0.365591	(0.36,0.39]	chr18	1401280	2	EXON_PSEUDO	EXON_PSEUDO	DHFRP1	ENSG00000188985.6	ENST00000579682.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	4.98743	5.339525	5.69162	8.82225e-5	2.15744e-6	0.00178337	7.62296e-5
chr16	28844697	28844779	15907778	0	-	0.585366	(0.53,0.59]	chr16	1273898	1	CDS	CDS:UTR3:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1:ENST00000561644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	5.03705	5.338889999999999	5.64073	0.00020199200000000001	7.00135e-6	0.00317801	2.25852e-4
chr7	29096157	29096217	8745259	0	-	0.583333	(0.53,0.59]	chr7	667296	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5:ENST00000458405.5:ENST00000447426.1:ENST00000488891.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	5.03705	5.338889999999999	5.64073	0.00020199200000000001	7.00135e-6	0.00317801	2.25852e-4
chr7	103540368	103540455	8963664	0	-	0.494253	(0.49,0.53]	chr7	686166	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	4.03034	5.33887	6.6474	4.26396e-5	2.1237e-9	9.97006e-4	2.03271e-7
chrX	48893899	48893954	19063444	0	-	0.563636	(0.53,0.59]	chrX	1620515	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TIMM17B	ENSG00000126768.12	ENST00000376582.7:ENST00000465150.6:ENST00000396779.7:ENST00000466995.5:ENST00000495490.6:ENST00000472645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	5.04298	5.33886	5.63474	1.91383e-4	7.53339e-6	0.0032874	2.17987e-4
chr1	55052649	55052720	203730	0	+	0.690141	(0.59,1]	chr1	26140	1	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	171	2	3.41002	5.338775	7.26753	3.61752e-5	8.22018e-9	7.90632e-4	7.18399e-7
chr8	68525516	68525613	9873573	0	-	0.453608	(0.42,0.455]	chr8	746517	1	EXON_PSEUDO	EXON_PSEUDO	RPS15AP25	ENSG00000236191.3	ENST00000489168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	82	2	5.20268	5.33856	5.47444	3.59669e-5	5.64888e-10	8.71318e-4	6.30855e-8
chr19	10908038	10908091	17228374	0	+	0.528302	(0.49,0.53]	chr19	1419198	1	CDS	CDS:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000588947.5:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000590039.5:ENST00000589693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	125	2	4.4279	5.338235	6.24857	0.00196987	1e-12	0.0193972	2.25522e-10
chr12	118138038	118138093	13108866	0	+	0.472727	(0.455,0.49]	chr12	1023106	1	CDS	CDS:EXON_MRNA	PEBP1	ENSG00000089220.5	ENST00000261313.3	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	4.38917	5.3373550000000005	6.28554	3.90809e-6	3.54381e-8	1.38004e-4	2.29553e-6
chr17	22523968	22524061	16169257	0	+	0.451613	(0.42,0.455]	chr17	1304367	7	UTR5	UTR5:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	4	173	2	4.46764	5.337350000000001	6.20706	2.0686e-9	1e-12	2.14963e-7	2.25522e-10
chr20	34560865	34560965	17947019	0	-	0.55	(0.53,0.59]	chr20	1520026	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	5.33351	5.336495	5.33948	4.35359e-5	4.08763e-5	9.64741e-4	0.00091744700000000005
chr5	43495763	43495861	6561277	0	-	0.581633	(0.53,0.59]	chr5	508493	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	C5orf34:EEF1A1P19	ENSG00000172244.9:ENSG00000249855.1	ENST00000306862.7:ENST00000503655.2:ENST00000513637.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	42	2	5.33351	5.336495	5.33948	4.35359e-5	4.08763e-5	9.64741e-4	0.00091744700000000005
chr1	214643226	214643324	710453	0	+	0.489796	(0.455,0.49]	chr1	71905	35	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	5.16215	5.33629	5.51043	5.04348e-5	9.08728e-6	0.00113788	2.53877e-4
chrX	155054770	155054869	18919146	0	+	0.484848	(0.455,0.49]	chrX	1612379	2	UTR3	UTR3:EXON_MRNA	FUNDC2	ENSG00000165775.18	ENST00000369498.8:ENST00000456179.1:ENST00000471528.1:ENST00000492303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	5.16215	5.33629	5.51043	5.04348e-5	9.08728e-6	0.00113788	2.53877e-4
chr7	6474233	6474284	8664796	0	-	0.45098	(0.42,0.455]	chr7	662843	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	4.9583	5.336285	5.71427	1.33053e-6	5.55326e-8	5.6008e-5	3.37237e-6
chr10	70203074	70203154	11560609	0	-	0.35	(0.33,0.36]	chr10	879625	4	UTR3	UTR3:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	4.03706	5.335395	6.63373	5.18043e-5	8.13851e-10	0.00115752	8.72045e-8
chrX	74611481	74611581	19117721	0	-	0.35	(0.33,0.36]	chrX	1626342	151	INTRON	INTRON	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	4.03706	5.335395	6.63373	5.18043e-5	8.13851e-10	0.00115752	8.72045e-8
chr8	23199356	23199448	9756709	0	-	0.586957	(0.53,0.59]	chr8	737628	2	CDS	CDS:EXON_MRNA	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	5.27087	5.334935	5.399	5.9416e-5	3.02387e-5	0.00130151	6.78876e-4
chr4	169720357	169720455	5218194	0	+	0.346939	(0.33,0.36]	chr4	420942	4	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	4.7603	5.33336	5.90642	3.75343e-7	2.59825e-7	1.72944e-5	1.42404e-5
chr4	82819073	82819173	5496421	0	-	0.48	(0.455,0.49]	chr4	440158	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	332	2	4.85407	5.333275	5.81248	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	45688180	45688275	175200	0	+	0.557895	(0.53,0.59]	chr1	22781	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	121	2	3.46612	5.333165	7.20021	1.16467e-5	3.54305e-11	3.43116e-4	5.39785e-9
chr19	46776974	46777041	17595476	0	-	0.552239	(0.53,0.59]	chr19	1481390	1	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	13	654	2	5.21407	5.332675	5.45128	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	19240296	19240371	877366	0	-	0.573333	(0.53,0.59]	chr1	90513	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000467423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	4.4923	5.332660000000001	6.17302	2.39218e-6	1.98983e-7	9.1799e-5	1.01095e-5
chr19	19528006	19528026	17264139	0	+	0.6	(0.59,1]	chr19	1426419	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000428459.6:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	513	2	3.15632	5.331799999999999	7.50728	6.43048e-4	1e-12	0.00850474	2.25522e-10
chr14	54441246	54441327	14635640	0	-	0.604938	(0.59,1]	chr14	1146429	1	CDS_START	CDS_START:CDS:EXON_MRNA	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.7151	5.331025	5.94695	0.00412279	1.71208e-5	0.0325842	4.31898e-4
chr11	8682813	8682816	11790584	0	+	0.333333	(0.33,0.36]	chr11	902641	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000529227.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	4.27919	5.33098	6.38277	2.2105e-9	1.66909e-9	2.27943e-7	1.65337e-7
chr3	10126692	10126792	3302353	0	+	0.57	(0.53,0.59]	chr3	290648	5	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	4.96656	5.330335	5.69411	5.01544e-6	6.94912e-8	1.7067e-4	4.08427e-6
chr2	170962892	170962946	2206475	0	+	0.537037	(0.53,0.59]	chr2	201855	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	5.19288	5.3302499999999995	5.46762	9.22873e-5	1.97761e-5	0.0016906	5.29643e-4
chr7	860212	860297	8093772	0	+	0.564706	(0.53,0.59]	chr7	618463	2	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	5.19883	5.330235	5.46164	8.7034e-5	2.11519e-5	0.00177086	5.06522e-4
chr5	177594138	177594211	6407882	0	+	0.438356	(0.42,0.455]	chr5	498324	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000507723.1:ENST00000513799.5:ENST00000507578.1:ENST00000510499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	219	2	4.55527	5.32993	6.10459	1.6991e-8	1e-12	1.33873e-6	2.25522e-10
chr13	50048972	50049061	14022219	0	-	0.404494	(0.39,0.42]	chr13	1099800	1	EXON_SMALL	EXON_SMALL:PRIMIRNA:INTRON	DLEU2:MIR16-1:MIR15A	ENSG00000231607.13:ENSG00000208006.1:ENSG00000283785.1	ENST00000621282.4:ENST00000668305.1:ENST00000425586.5:ENST00000458725.6:ENST00000433070.7:ENST00000443587.5:ENST00000659339.1:ENST00000385271.1:ENST00000607334.3	miRNA	miRNA	miRNA:lncRNA	miRNA:lncRNA:primary_miRNA	0	51	2	4.14886	5.329689999999999	6.51052	0.00415881	4.78431e-9	0.0325842	4.08907e-7
chr3	14135157	14135232	3319420	0	+	0.613333	(0.59,1]	chr3	292081	1	CDS	CDS:EXON_MRNA	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	4.42422	5.329495	6.23477	1.17291e-5	5.29741e-6	3.12994e-4	1.78149e-4
chr1	149840746	149840846	1286935	0	-	0.62	(0.59,1]	chr1	127828	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C14	ENSG00000203811.1	ENST00000369158.1	protein_coding	protein_coding	protein_coding	protein_coding	7	468	2	4.30748	5.3293800000000005	6.35128	5.16604e-9	1.45285e-11	4.7598e-7	2.43455e-9
chr19	18388651	18388743	17258400	0	+	0.706522	(0.59,1]	chr19	1425388	5	CDS	CDS:EXON_MRNA	GDF15	ENSG00000130513.6	ENST00000252809.3	protein_coding	protein_coding	protein_coding	protein_coding	5	522	2	4.7146	5.329314999999999	5.94403	7.37221e-8	1e-12	4.77031e-6	2.25522e-10
chr19	43769773	43769829	17580576	0	-	0.642857	(0.59,1]	chr19	1479105	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000648053.1:ENST00000598836.1:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.9413	5.32895	5.7166	0.00191468	5.56053e-5	0.0190905	0.0011271
chr1	54875092	54875151	1030805	0	-	0.576271	(0.53,0.59]	chr1	107019	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.86823	5.328749999999999	5.78927	4.35895e-4	2.83401e-6	0.00623608	9.62519e-5
chr14	55062617	55062705	14298023	0	+	0.545455	(0.53,0.59]	chr14	1117542	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.86823	5.328749999999999	5.78927	4.35895e-4	2.83401e-6	0.00623608	9.62519e-5
chr19	11106564	11106625	17230032	0	+	0.57377	(0.53,0.59]	chr19	1419561	1	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.86823	5.328749999999999	5.78927	4.35895e-4	2.83401e-6	0.00623608	9.62519e-5
chr6	143333281	143333363	7447628	0	+	0.536585	(0.53,0.59]	chr6	569888	1	CDS	CDS:EXON_MRNA	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.77222	5.32801	5.8838	6.67251e-4	1.51824e-6	0.00867533	5.67784e-5
chr9	137184412	137184512	10893352	0	-	0.63	(0.59,1]	chr9	828455	1	SS5_PROX	SS5_PROX:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.57037	5.327635	6.0849	0.0054994	1.19649e-5	0.0402071	3.513e-4
chr22	35838413	35838511	18495453	0	-	0.510204	(0.49,0.53]	chr22	1577878	16	INTRON	INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000359369.8:ENST00000416721.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	923	2	4.74578	5.3275950000000005	5.90941	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	10689212	10689312	17226290	0	+	0.56	(0.53,0.59]	chr19	1418921	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000590261.5:ENST00000588657.5:ENST00000590869.1:ENST00000591649.5:ENST00000586544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.5586	5.327365	6.09613	0.00161229	3.47717e-7	0.0169168	1.62117e-5
chr10	50311261	50311319	11486567	0	-	0.413793	(0.39,0.42]	chr10	876705	1	CDS	CDS:UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.89218	5.32731	5.76244	1.6518e-4	1.61725e-6	0.0029267300000000002	5.98677e-5
chr1	160999693	160999747	1331441	0	-	0.592593	(0.59,1]	chr1	136439	2	CDS	CDS:UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	171	2	4.04551	5.327185	6.60886	6.68092e-7	6.00443e-7	2.85621e-5	2.83731e-5
chr7	100633415	100633485	8952307	0	-	0.657143	(0.59,1]	chr7	684210	1	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000476304.5:ENST00000475011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	110	2	4.80875	5.326815	5.84488	4.10826e-5	1.14636e-6	9.68079e-4	4.49174e-5
chr5	144160496	144160559	6881759	0	-	0.412698	(0.39,0.42]	chr5	527209	1	CDS	CDS:EXON_MRNA	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5:ENST00000519064.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	5.00391	5.326545	5.64918	9.12714e-5	3.47137e-6	0.00182992	1.13687e-4
chr12	49755634	49755695	12869188	0	+	0.557377	(0.53,0.59]	chr12	999616	1	CDS	CDS:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000549445.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	114	2	3.29588	5.326305	7.35673	1.96478e-4	7.9774e-12	0.00335505	1.42362e-9
chr1	161591313	161591398	501282	0	+	0.505882	(0.49,0.53]	chr1	54308	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000473530.6:ENST00000611236.1	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	0	40	2	4.99034	5.326029999999999	5.66172	1.6002e-4	3.99372e-6	0.00286408	1.28691e-4
chrX	47214536	47214586	18686922	0	+	0.52	(0.49,0.53]	chrX	1593279	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.99034	5.326029999999999	5.66172	1.6002e-4	3.99372e-6	0.00286408	1.28691e-4
chr2	74462332	74462428	2742891	0	-	0.625	(0.59,1]	chr2	244411	11	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	164	2	4.80662	5.325749999999999	5.84488	4.10826e-5	2.77927e-8	9.68079e-4	1.87297e-6
chr1	147178936	147179031	453650	0	+	0.473684	(0.455,0.49]	chr1	45093	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	4	183	2	5.22198	5.3255300000000005	5.42908	5.92288e-10	1.11922e-12	7.2559e-8	2.49027e-10
chr17	63589564	63589663	16317549	0	+	0.323232	(0.29,0.33]	chr17	1323671	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	4.09886	5.325475	6.55209	4.1989e-5	1.26407e-9	9.84661e-4	1.29328e-7
chr3	134020329	134020429	4462874	0	-	0.6	(0.59,1]	chr3	370942	212	INTRON	INTRON	SLCO2A1	ENSG00000174640.15	ENST00000310926.11:ENST00000493729.5:ENST00000481359.3:ENST00000462770.5:ENST00000464676.5:ENST00000478651.1:ENST00000478662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	137	2	3.23348	5.3253699999999995	7.41726	0.00352837	1.42199e-9	0.0298518	1.43508e-7
chr20	37225687	37225744	17777834	0	+	0.54386	(0.53,0.59]	chr20	1502054	1	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	2	136	2	5.03128	5.32479	5.6183	4.02505e-8	2.43197e-10	2.83072e-6	2.99496e-8
chr6	160096438	160096531	7528880	0	+	0.494624	(0.49,0.53]	chr6	574950	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	4.54668	5.3247800000000005	6.10288	1.40979e-6	1.33258e-7	5.33111e-5	8.01671e-6
chr6	36914283	36914359	7135646	0	+	0.552632	(0.53,0.59]	chr6	549782	1	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.43863	5.3243100000000005	6.20999	0.00254763	1.51461e-7	0.0233955	8.00634e-6
chr1	54036598	54036658	1027222	0	-	0.416667	(0.39,0.42]	chr1	106608	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000470395.1:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	120	2	4.64359	5.323905	6.00422	5.75571e-7	2.32425e-12	2.76816e-5	4.77837e-10
chr1	196685150	196685237	640931	0	+	0.45977	(0.455,0.49]	chr1	64451	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	4.85567	5.32355	5.79143	8.96581e-7	1.2429e-7	4.03386e-5	6.73437e-6
chr11	88312409	88312509	12533254	0	-	0.52	(0.49,0.53]	chr11	972543	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	5.11868	5.323525	5.52837	9.66505e-5	7.50805e-6	0.00175267	2.3779e-4
chr11	119337112	119337210	12163919	0	+	0.5	(0.49,0.53]	chr11	938094	8	UTR3	UTR3:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.16557	5.323375	5.48118	6.36135e-5	1.24248e-5	0.00136069	3.28918e-4
chr7	43046786	43046884	8792670	0	-	0.561224	(0.53,0.59]	chr7	670294	18	INTRON	INTRON	AC005537.2	ENSG00000232006.9	ENST00000585996.5:ENST00000629291.2:ENST00000653897.1:ENST00000657132.1:ENST00000666102.1:ENST00000609382.3:ENST00000630282.2:ENST00000628246.2:ENST00000631088.1:ENST00000631050.2:ENST00000628203.2	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.95825	5.32318	5.68811	2.87508e-4	5.40688e-6	0.00457439	1.64762e-4
chr1	11748414	11748493	44131	0	+	0.594937	(0.59,1]	chr1	5407	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1:ENST00000476309.5:ENST00000514733.5:ENST00000513739.5:ENST00000471765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.28284	5.3224350000000005	5.36203	4.04404e-4	3.74697e-4	0.00560631	0.00550292
chr16	88650955	88651013	16074018	0	-	0.672414	(0.59,1]	chr16	1291463	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000567174.5:ENST00000569359.5:ENST00000563526.5:ENST00000568278.1:ENST00000562209.1:ENST00000561972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	5.28284	5.3224350000000005	5.36203	4.04404e-4	3.74697e-4	0.00560631	0.00550292
chr11	71741062	71741162	12445539	0	-	0.52	(0.49,0.53]	chr11	967081	7	INTRON	INTRON	ALG1L9P	ENSG00000248671.8	ENST00000664227.1	lncRNA	lncRNA	lncRNA	lncRNA	3	122	2	3.09336	5.32237	7.55138	1.28432e-4	1e-12	0.00241206	2.25522e-10
chr10	97432424	97432524	11212389	0	+	0.56	(0.53,0.59]	chr10	852980	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	5.11707	5.322365	5.52766	1.35965e-4	1.38993e-5	0.00231202	3.94563e-4
chr17	44012957	44013057	16555932	0	-	0.58	(0.53,0.59]	chr17	1358819	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8:ENST00000587529.1:ENST00000585950.5:ENST00000592127.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	5.11707	5.322365	5.52766	1.35965e-4	1.38993e-5	0.00231202	3.94563e-4
chr11	7995253	7995351	11789499	0	+	0.489796	(0.455,0.49]	chr11	902519	1	CDS	CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	114	2	5.01795	5.322115	5.62628	2.66992e-8	1.21512e-10	1.97197e-6	1.61253e-8
chr1	111182186	111182242	406189	0	+	0.357143	(0.33,0.36]	chr1	39896	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.96487	5.32207	5.67927	9.26851e-5	1.93383e-6	0.00185187	6.97773e-5
chr2	54982583	54982653	2666206	0	-	0.414286	(0.39,0.42]	chr2	238487	2	CDS	CDS:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	8	378	2	4.4981	5.322039999999999	6.14598	1.50425e-10	1e-12	2.16987e-8	2.25522e-10
chr4	87893027	87893126	4942246	0	+	0.383838	(0.36,0.39]	chr4	406011	13	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	231	2	4.7447	5.321165000000001	5.89763	1.22446e-12	1e-12	2.96703e-10	2.25522e-10
chr3	184242613	184242676	4622918	0	-	0.571429	(0.53,0.59]	chr3	381715	1	CDS	CDS:UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000485912.1:ENST00000455059.5:ENST00000446569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	97	2	4.07196	5.32108	6.5702	1.26681e-6	8.55645e-9	4.89488e-5	7.38823e-7
chr10	66181513	66181613	11538908	0	-	0.37	(0.36,0.39]	chr10	878668	779	INTRON	INTRON	CTNNA3	ENSG00000183230.18	ENST00000684154.1:ENST00000682758.1:ENST00000683963.1:ENST00000433211.7:ENST00000682945.1:ENST00000683624.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.58747	5.321	6.05453	6.55819e-4	1.53427e-7	0.00860229	8.08703e-6
chr17	46104587	46104687	16566243	0	-	0.24	[0,0.29]	chr17	1360748	95	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.36183	5.320905	6.27998	0.00170062	1.22353e-8	0.01759	9.19778e-7
chr11	119055184	119055261	12626548	0	-	0.584416	(0.53,0.59]	chr11	979821	1	CDS	CDS:UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5:ENST00000534233.5:ENST00000526656.5:ENST00000531968.5:ENST00000532421.5:ENST00000533381.5:ENST00000527038.6:ENST00000622474.4:ENST00000529174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	186	2	4.384	5.320695000000001	6.25739	1.10412e-7	1e-12	6.85761e-6	2.25522e-10
chr13	41384936	41385018	13989919	0	-	0.536585	(0.53,0.59]	chr13	1097268	3	EXON_PSEUDO	EXON_PSEUDO	TUBBP2	ENSG00000214222.2	ENST00000454403.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	137	2	4.12862	5.32028	6.51194	1.37625e-8	1.21421e-8	1.11679e-6	9.13557e-7
chr19	38305488	38305507	17559372	0	-	0.684211	(0.59,1]	chr19	1474558	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	106	2	4.21445	5.320065	6.42568	4.37862e-5	1.13013e-6	0.00101529	4.43062e-5
chr12	57696297	57696373	12904089	0	+	0.631579	(0.59,1]	chr12	1005868	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000549307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.03834	5.3199950000000005	5.60165	0.00108238	1.30928e-4	0.0118355	0.00243846
chr15	74848599	74848650	15375920	0	-	0.54902	(0.53,0.59]	chr15	1215484	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5:ENST00000567638.1:ENST00000565345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	4.16383	5.31984	6.47585	0.00659193	1.951e-8	0.0454205	1.37715e-6
chrX	133783272	133783372	19241335	0	-	0.41	(0.39,0.42]	chrX	1634444	287	INTRON	INTRON	GPC3	ENSG00000147257.15	ENST00000394299.7:ENST00000370818.8:ENST00000631057.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77106	5.31926	5.86746	3.03764e-4	7.74696e-7	0.00472028	3.2172e-5
chr8	33011491	33011590	9271675	0	+	0.454545	(0.42,0.455]	chr8	709692	148	INTRON	INTRON	RP11-11N9.4	ENSG00000247134.7	ENST00000659524.1:ENST00000666042.1:ENST00000664284.1:ENST00000666659.1:ENST00000657565.1:ENST00000670899.1:ENST00000666221.1:ENST00000671310.1:ENST00000655535.1:ENST00000665465.1:ENST00000658837.1:ENST00000500843.2:ENST00000520819.6	lncRNA	lncRNA	lncRNA	lncRNA	1	65	2	4.22524	5.3185400000000005	6.41184	1.2079e-5	1.42035e-8	3.52389e-4	1.0503e-6
chr11	61803669	61803755	12405943	0	-	0.476744	(0.455,0.49]	chr11	960597	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	436	2	4.48333	5.31837	6.15341	8.87168e-12	1e-12	1.70946e-9	2.25522e-10
chr7	29096102	29096157	8745258	0	-	0.418182	(0.39,0.42]	chr7	667295	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5:ENST00000458405.5:ENST00000447426.1:ENST00000488891.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	5.10761	5.316935	5.52626	5.12039e-5	7.67816e-6	0.00114668	2.20857e-4
chr7	131702268	131702364	9070174	0	-	0.416667	(0.39,0.42]	chr7	692785	1	EXON_PSEUDO	EXON_PSEUDO	AC093106.6	ENSG00000236395.1	ENST00000428212.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	5.10761	5.316935	5.52626	5.12039e-5	7.67816e-6	0.00114668	2.20857e-4
chrY	5338119	5338213	19342303	0	-	0.489362	(0.455,0.49]	chrY	1645390	5	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P2	ENSG00000235001.3	ENST00000422633.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	5.30391	5.3157499999999995	5.32759	3.12735e-5	1.92345e-5	6.97306e-4	5.18397e-4
chr5	96793879	96793957	6721292	0	-	0.448718	(0.42,0.455]	chr5	517457	2	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	4.39894	5.315105	6.23127	3.61951e-6	6.12952e-8	1.29307e-4	3.67043e-6
chr16	20777441	20777510	15582803	0	+	0.42029	(0.42,0.455]	chr16	1234750	2	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	4.02772	5.315045	6.60237	4.30844e-5	2.80087e-9	0.00100091	2.57422e-7
chr2	55232677	55232750	1822051	0	+	0.589041	(0.53,0.59]	chr2	173951	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000463185.1:ENST00000272317.11:ENST00000471772.6:ENST00000478196.6:ENST00000494756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	1775	2	4.83067	5.314819999999999	5.79897	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	87703820	87703916	19141902	0	-	0.614583	(0.59,1]	chrX	1627927	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	113	2	3.74795	5.314235	6.88052	4.30112e-4	6.21413e-8	0.00620274	3.71551e-6
chr5	177592574	177592624	6407862	0	+	0.6	(0.59,1]	chr5	498316	1	CDS	CDS:EXON_MRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000505521.1:ENST00000507723.1:ENST00000513799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	259	2	4.71001	5.31382	5.91763	2.85329e-5	1.13028e-9	7.16403e-4	1.16563e-7
chr6	157292900	157292999	8042398	0	-	0.383838	(0.36,0.39]	chr6	614672	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	4.98743	5.313795	5.64016	8.82225e-5	8.28589e-11	0.00178337	1.15034e-8
chr19	35154729	35154820	17303735	0	+	0.703297	(0.59,1]	chr19	1430585	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392218.6:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	138	2	4.06326	5.31375	6.56424	4.19122e-6	7.86684e-7	1.3377e-4	3.61693e-5
chr5	103203129	103203229	6133291	0	+	0.29	[0,0.29]	chr5	479642	16	UTR3	UTR3:EXON_MRNA	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.92321	5.31374	5.70427	1.17014e-4	1.20169e-6	0.00222617	4.6687e-5
chr21	5973052	5973142	18154291	0	-	0.588889	(0.53,0.59]	chr21	1541260	1	CDS	CDS:EXON_MRNA	CH507-42P11.1	ENSG00000274559.3	ENST00000464664.3	protein_coding	protein_coding	protein_coding	protein_coding	3	179	2	4.51306	5.31373	6.1144	3.8713e-8	1.84053e-12	2.47685e-6	4.21531e-10
chr12	56142654	56142732	12898415	0	+	0.641026	(0.59,1]	chr12	1004301	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550878.5:ENST00000548142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.86977	5.313705000000001	5.75764	0.00246014	4.53637e-5	0.0230058	9.4617e-4
chr19	48384313	48384397	17601682	0	-	0.535714	(0.53,0.59]	chr19	1482715	2	CDS	CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5:ENST00000600980.1	protein_coding	protein_coding	protein_coding	protein_coding	8	395	2	5.07749	5.31367	5.54985	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	65130919	65130977	12421671	0	-	0.517241	(0.49,0.53]	chr11	963750	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	109	2	3.16986	5.313305	7.45675	3.95698e-4	1e-12	0.00587341	2.25522e-10
chr8	22138688	22138788	9750680	0	-	0.7	(0.59,1]	chr8	737164	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.7151	5.31306	5.91102	0.00412279	2.06903e-5	0.0325842	4.99825e-4
chr19	20125295	20125392	17266895	0	+	0.494845	(0.49,0.53]	chr19	1426804	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	ZNF90:CTC-260E6.2	ENSG00000213988.11:ENSG00000224864.4	ENST00000474284.1:ENST00000469078.5:ENST00000497576.1	protein_coding	nonsense_mediated_decay	protein_coding:transcribed_processed_pseudogene	nonsense_mediated_decay:processed_transcript:transcribed_processed_pseudogene	2	96	2	4.75646	5.31302	5.86958	7.54524e-7	3.50447e-9	3.49213e-5	3.13339e-7
chr1	12104443	12104531	46468	0	+	0.545455	(0.53,0.59]	chr1	6008	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	5.03705	5.311175	5.5853	0.00020199200000000001	9.83355e-6	0.00317801	2.98194e-4
chr17	78972166	78972265	16698074	0	-	0.565657	(0.53,0.59]	chr17	1376215	6	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	5.04298	5.311145	5.57931	1.91383e-4	1.05602e-5	0.0032874	2.89015e-4
chr15	99258127	99258227	15142843	0	+	0.39	(0.36,0.39]	chr15	1190792	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	3	155	2	4.08535	5.311045	6.53674	1.13346e-6	1e-12	4.90979e-5	2.25522e-10
chr2	239914189	239914289	3244890	0	-	0.37	(0.36,0.39]	chr2	285963	8	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.16143	5.310815	6.4602	0.00486719	1.37652e-9	0.0366328	1.50612e-7
chrX	49572103	49572163	18695071	0	+	0.533333	(0.53,0.59]	chrX	1594998	1	CDS	CDS:EXON_MRNA	GAGE12G	ENSG00000215269.5	ENST00000445148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	4.51944	5.3108	6.10216	2.00484e-6	3.17557e-7	7.16652e-5	1.68263e-5
chr1	21828254	21828340	890660	0	-	0.581395	(0.53,0.59]	chr1	92228	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	4.14313	5.30949	6.47585	7.34074e-7	1.951e-8	3.41945e-5	1.37715e-6
chr17	44012096	44012166	16555922	0	-	0.557143	(0.53,0.59]	chr17	1358815	2	CDS	CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	4.5564	5.30926	6.06212	1.54434e-6	4.23179e-7	5.75816e-5	2.1371e-5
chr3	160404744	160404825	3852800	0	+	0.37037	(0.36,0.39]	chr3	327395	1	EXON_SMALL	EXON_SMALL:SS5_PROX:PRIMIRNA:INTRON	SMC4:MIR15B:MIR16-2	ENSG00000113810.16:ENSG00000207779.1:ENSG00000198987.1	ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000344722.5:ENST00000470240.5:ENST00000497984.5:ENST00000385045.1:ENST00000362117.1:ENST00000487747.5	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	0	51	2	4.0322	5.308809999999999	6.58542	0.00588589	1.78594e-9	0.0427941	1.7523e-7
chr5	132210443	132210523	6833639	0	-	0.525	(0.49,0.53]	chr5	522722	3	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5:ENST00000395164.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	5.02624	5.30869	5.59114	5.02516e-6	3.25781e-8	1.7067e-4	2.14209e-6
chr1	156020012	156020067	1313181	0	-	0.527273	(0.49,0.53]	chr1	133114	1	CDS	CDS:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5:ENST00000368311.5:ENST00000472898.5:ENST00000466905.4:ENST00000474377.5:ENST00000531917.5:ENST00000526212.2:ENST00000467041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.83319	5.308395	6.7836	1.34601e-4	6.30366e-10	0.00249552	6.93109e-8
chr1	23691823	23691858	98619	0	+	0.542857	(0.53,0.59]	chr1	11404	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	104	2	4.68166	5.30826	5.93486	1.0295e-6	9.1394e-9	4.52516e-5	7.18147e-7
chr1	95191622	95191695	362102	0	+	0.438356	(0.42,0.455]	chr1	35681	2	CDS	CDS:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.54792	5.308225	6.06853	9.66045e-4	2.14495e-7	0.0115185	1.07721e-5
chr11	2883305	2883399	12233173	0	-	0.43617	(0.42,0.455]	chr11	944788	2	UTR3	UTR3:EXON_MRNA	CDKN1C	ENSG00000129757.15	ENST00000414822.8:ENST00000440480.8:ENST00000430149.3:ENST00000380725.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.54792	5.308225	6.06853	9.66045e-4	2.14495e-7	0.0115185	1.07721e-5
chr6	33313390	33313477	7669346	0	-	0.747126	(0.59,1]	chr6	587587	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1:ENST00000476333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	107	2	4.5664	5.308025	6.04965	9.85057e-6	6.21388e-6	2.72926e-4	2.03021e-4
chr1	211578251	211578338	1478573	0	-	0.655172	(0.59,1]	chr1	149196	4	CDS	CDS:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	1	106	2	4.6626	5.307635	5.95267	2.38682e-5	2.85e-6	6.18922e-4	9.64791e-5
chr1	150967819	150967877	1291393	0	-	0.482759	(0.455,0.49]	chr1	128692	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000559660.1:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	145	2	3.98681	5.3073049999999995	6.6278	2.32792e-9	8.95803e-10	2.19802e-7	1.0453e-7
chr1	201006786	201006885	1445385	0	-	0.474747	(0.455,0.49]	chr1	144921	7	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.6621	5.307115	5.95213	7.84472e-4	2.72823e-7	0.00927662	1.4763e-5
chr1	180194212	180194302	582885	0	+	0.622222	(0.59,1]	chr1	60574	1	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.07453	5.30711	5.53969	0.00117617	1.29608e-4	0.0132131	0.00223885
chr4	164190073	164190171	5204351	0	+	0.377551	(0.36,0.39]	chr4	420030	19	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	373	2	4.73081	5.306995000000001	5.88318	2.98719e-7	1e-12	1.60273e-5	2.25522e-10
chr11	2395467	2395520	11764964	0	+	0.566038	(0.53,0.59]	chr11	900172	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000530239.1:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	203	2	4.75862	5.306905	5.85519	2.52766e-10	2.43671e-11	3.08557e-8	4.25198e-9
chr19	34227788	34227888	17299080	0	+	0.42	(0.39,0.42]	chr19	1429709	5	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	358	2	5.22206	5.306205	5.39035	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	62789901	62789947	11974117	0	+	0.521739	(0.49,0.53]	chr11	917987	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	TMEM179B:MIR6748	ENSG00000185475.11:ENSG00000284535.1	ENST00000333449.9:ENST00000533861.5:ENST00000532586.1:ENST00000532345.1:ENST00000610433.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	49	2	4.28332	5.306195	6.32907	0.00338762	3.09658e-8	0.0288632	2.04921e-6
chr7	1439287	1439384	8645278	0	-	0.505155	(0.49,0.53]	chr7	660635	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000487156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.84744	5.306	5.76456	3.70203e-4	1.57714e-6	0.00515475	6.4504e-5
chr2	77792895	77792991	1901558	0	+	0.364583	(0.36,0.39]	chr2	179888	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL38P2	ENSG00000237077.1	ENST00000422418.1:ENST00000447303.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	261	2	4.91309	5.305960000000001	5.69883	5.0531e-10	1e-12	6.29748e-8	2.25522e-10
chr14	99510977	99511074	14481783	0	+	0.474227	(0.455,0.49]	chr14	1131385	3	UTR3	UTR3:EXON_MRNA:INTRON	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.36307	5.305315	6.24756	0.00218641	4.80845e-8	0.0208941	2.97443e-6
chr2	208031857	208031953	3141874	0	-	0.489583	(0.455,0.49]	chr2	277544	6	EXON_PSEUDO	EXON_PSEUDO	RPL9P14	ENSG00000185078.3	ENST00000423843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	46	2	4.36307	5.305315	6.24756	0.00218641	4.80845e-8	0.0208941	2.97443e-6
chr22	19175946	19176037	18431152	0	-	0.582418	(0.53,0.59]	chr22	1570486	5	UTR3	UTR3:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	445	2	5.2078	5.30525	5.4027	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	157300837	157300918	2152539	0	+	0.54321	(0.53,0.59]	chr2	198607	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5:ENST00000463418.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.76633	5.304825	5.84332	6.98999e-4	1.90853e-6	0.00846751	7.59317e-5
chr13	41384854	41384936	13989918	0	-	0.573171	(0.53,0.59]	chr13	1097268	2	EXON_PSEUDO	EXON_PSEUDO	TUBBP2	ENSG00000214222.2	ENST00000454403.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	44	2	4.77222	5.304765	5.8373100000000004	6.67251e-4	2.06883e-6	0.00867533	7.35008e-5
chr2	58251735	58251833	1830047	0	+	0.561224	(0.53,0.59]	chr2	174311	4	EXON_PSEUDO	EXON_PSEUDO	EIF3FP3	ENSG00000233426.3	ENST00000434851.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	44	2	4.77222	5.304765	5.8373100000000004	6.67251e-4	2.06883e-6	0.00867533	7.35008e-5
chr20	44506911	44506996	17982070	0	-	0.423529	(0.42,0.455]	chr20	1523390	2	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.50825	5.304375	7.1005	5.86898e-5	2.76534e-11	0.00129243	4.32055e-9
chr11	82839260	82839342	12499242	0	-	0.47561	(0.455,0.49]	chr11	971434	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000681592.1:ENST00000526918.6:ENST00000680186.1:ENST00000679809.1:ENST00000681432.1:ENST00000680040.1:ENST00000681883.1:ENST00000525772.6:ENST00000680524.1:ENST00000393399.6:ENST00000532709.5:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.97525	5.304285	5.63332	1.38474e-4	4.15159e-6	0.00254294	1.32627e-4
chr11	75399514	75399517	12023031	0	+	0.333333	(0.33,0.36]	chr11	926954	1	EXON_MRNA	EXON_MRNA	RPS3	ENSG00000149273.15	ENST00000529173.5	protein_coding	retained_intron	protein_coding	retained_intron	0	32	2	5.19876	5.304155	5.40955	2.37278e-5	1.14206e-5	6.1689e-4	3.08108e-4
chr12	46203009	46203089	13313589	0	-	0.45	(0.42,0.455]	chr12	1043498	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.9566	5.3039950000000005	5.65139	2.10615e-4	2.06893e-6	0.00327655	8.11386e-5
chr17	15465262	15465362	16456269	0	-	0.48	(0.455,0.49]	chr17	1343279	118	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	5.06282	5.30383	5.54484	1.16789e-4	4.89523e-6	0.0020505	1.67428e-4
chr4	173248163	173248255	5232987	0	+	0.478261	(0.455,0.49]	chr4	421173	3	CDS	CDS:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	5.06282	5.30383	5.54484	1.16789e-4	4.89523e-6	0.0020505	1.67428e-4
chr9	128966211	128966310	10482404	0	+	0.393939	(0.39,0.42]	chr9	791019	67	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	5.28793	5.30381	5.31969	2.68682e-5	1.91512e-9	6.19143e-4	2.01115e-7
chr11	112087856	112087914	12136263	0	+	0.482759	(0.455,0.49]	chr11	934874	1	CDS	CDS:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000640554.1:ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	5.16215	5.303485	5.44482	5.04348e-5	1.36044e-5	0.00113788	3.54469e-4
chr17	15465461	15465561	16456271	0	-	0.44	(0.42,0.455]	chr17	1343279	120	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	5.11218	5.30323	5.49428	6.01815e-5	1.07978e-5	0.00130886	2.9314e-4
chr20	34588529	34588607	17947301	0	-	0.448718	(0.42,0.455]	chr20	1520055	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	5.11218	5.30323	5.49428	6.01815e-5	1.07978e-5	0.00130886	2.9314e-4
chr11	119052294	119052361	12626514	0	-	0.597015	(0.59,1]	chr11	979807	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	118	2	5.09587	5.303195	5.51052	0.00019737500000000001	1.74922e-7	0.00336487	9.05985e-6
chr12	68553783	68553882	13394549	0	-	0.525253	(0.49,0.53]	chr12	1055115	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP12	ENSG00000240087.3	ENST00000435879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	100	2	4.89682	5.30293	5.70904	2.30382e-6	9.41684e-10	8.86852e-5	9.95263e-8
chr9	128166130	128166196	10863694	0	-	0.575758	(0.53,0.59]	chr9	823379	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000471773.5:ENST00000372938.10:ENST00000372954.5:ENST00000485862.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000461765.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	166	2	3.92457	5.30234	6.68011	6.38119e-9	3.42488e-9	5.23585e-7	3.34439e-7
chr19	35746747	35746847	17306635	0	+	0.63	(0.59,1]	chr19	1431507	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PSENEN:AC002398.9	ENSG00000205155.8:ENSG00000188223.9	ENST00000591949.1:ENST00000222266.2:ENST00000587708.7:ENST00000591613.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	212	2	5.00537	5.3022100000000005	5.59905	4.21365e-7	4.98138e-9	2.13696e-5	4.22807e-7
chr1	19219568	19219632	877135	0	-	0.53125	(0.53,0.59]	chr1	90428	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000461353.1:ENST00000486405.1:ENST00000486238.1:ENST00000494770.6:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	5.27087	5.30219	5.33351	5.9416e-5	4.35359e-5	0.00130151	0.00091744700000000005
chrX	77969255	77969349	19129672	0	-	0.553191	(0.53,0.59]	chrX	1626918	4	CDS	CDS:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.27087	5.30219	5.33351	5.9416e-5	4.35359e-5	0.00130151	0.00091744700000000005
chr8	30069899	30069973	9780523	0	-	0.391892	(0.39,0.42]	chr8	739521	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	3.93996	5.302075	6.66419	0.00841622	1.22831e-9	0.054565	1.2604e-7
chr6	53270659	53270727	7740191	0	-	0.558824	(0.53,0.59]	chr6	594345	2	CDS	CDS:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	4	222	2	5.16436	5.301235	5.43811	1.03869e-10	7.221e-12	1.55189e-8	1.30195e-9
chr5	96795041	96795101	6721304	0	-	0.383333	(0.36,0.39]	chr5	517463	1	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	5.0994	5.301175000000001	5.50295	4.68763e-5	7.4907e-6	0.00107286	2.17853e-4
chr1	42929592	42929683	967011	0	-	0.659341	(0.59,1]	chr1	101880	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000669445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	890	2	4.73266	5.3010649999999995	5.86947	9.39139e-11	1e-12	1.42455e-8	2.25522e-10
chrX	40599666	40599741	18667569	0	+	0.44	(0.42,0.455]	chrX	1591868	2	CDS	CDS:UTR3:EXON_MRNA	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637140.1:ENST00000637793.1:ENST00000638046.1:ENST00000637019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	4.60896	5.30105	5.99314	8.72604e-7	1.65844e-7	3.55816e-5	9.74137e-6
chr6	26021990	26022050	7100991	0	+	0.533333	(0.53,0.59]	chr6	542749	1	UTR3	UTR3:EXON_MRNA	H4C1	ENSG00000278637.2	ENST00000617569.2	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	4.28604	5.300775	6.31551	9.59485e-6	6.83735e-8	2.93255e-4	4.03413e-6
chr7	6024394	6024486	8662408	0	-	0.358696	(0.33,0.36]	chr7	662531	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1:ENST00000490523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	391	2	5.07715	5.30066	5.52417	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	18388468	18388560	17258398	0	+	0.673913	(0.59,1]	chr19	1425388	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GDF15	ENSG00000130513.6	ENST00000252809.3:ENST00000594925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	852	2	4.05604	5.29994	6.54384	1.74821e-8	1e-12	1.37225e-6	2.25522e-10
chr3	100629097	100629197	3636699	0	+	0.41	(0.39,0.42]	chr3	311722	1	SS3_PROX	SS3_PROX:INTRON	ADGRG7	ENSG00000144820.8	ENST00000273352.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.89218	5.29955	5.70692	1.6518e-4	2.36087e-6	0.0029267300000000002	8.27472e-5
chr12	6979542	6979641	12716039	0	+	0.535354	(0.53,0.59]	chr12	987463	39	UTR3	UTR3:EXON_MRNA:INTRON	EMG1	ENSG00000126749.16	ENST00000599672.6:ENST00000607161.5:ENST00000261406.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	99	2	3.30943	5.29934	7.28925	0.0018255	1.52468e-11	0.0183913	2.54757e-9
chr15	34489295	34489393	15205567	0	-	0.530612	(0.53,0.59]	chr15	1197044	4	EXON_PSEUDO	EXON_PSEUDO	HNRNPLP2	ENSG00000259917.1	ENST00000568980.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	41	2	5.19883	5.298915	5.399	8.7034e-5	3.02387e-5	0.00177086	6.78876e-4
chr6	32117640	32117694	7664419	0	-	0.574074	(0.53,0.59]	chr6	585990	2	CDS	CDS:EXON_MRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.19883	5.298915	5.399	8.7034e-5	3.02387e-5	0.00177086	6.78876e-4
chr3	150544317	150544414	4517220	0	-	0.391753	(0.39,0.42]	chr3	374942	25	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1	protein_coding	protein_coding	protein_coding	protein_coding	7	226	2	4.66551	5.2988	5.93209	2.11253e-12	1.66589e-12	4.75999e-10	3.55473e-10
chr7	12362218	12362317	8683287	0	-	0.383838	(0.36,0.39]	chr7	663998	3	INTRON	INTRON	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	5.12054	5.298515	5.47649	7.15553e-5	4.3709e-6	0.00137393	1.52262e-4
chr2	44996596	44996688	1772389	0	+	0.5	(0.49,0.53]	chr2	171661	3	EXON_PSEUDO	EXON_PSEUDO	KRTCAP2P1	ENSG00000231848.1	ENST00000423051.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	5.27477	5.29828	5.32179	4.14521e-5	2.63311e-5	8.8376e-4	6.73425e-4
chr20	4699882	4699982	17661024	0	+	0.5	(0.49,0.53]	chr20	1493236	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	5.27477	5.29828	5.32179	4.14521e-5	2.63311e-5	8.8376e-4	6.73425e-4
chr11	119054120	119054178	12626534	0	-	0.568965	(0.53,0.59]	chr11	979811	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.00393	5.2981750000000005	6.59242	0.0108084	7.57932e-9	0.064368	6.12104e-7
chr2	120222023	120222117	2859288	0	-	0.361702	(0.36,0.39]	chr2	255245	1	CDS	CDS:EXON_MRNA	TMEM185B	ENSG00000226479.4	ENST00000426077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.58747	5.29771	6.00795	6.55819e-4	2.19402e-7	0.00860229	1.09601e-5
chr11	18407566	18407662	11831568	0	+	0.46875	(0.455,0.49]	chr11	906046	3	UTR3	UTR3:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	48	1758	2	5.28605	5.297335	5.30862	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	21762745	21762844	18442378	0	-	0.424242	(0.42,0.455]	chr22	1572508	32	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	4.60138	5.29726	5.99314	1.65844e-7	1.3802e-8	9.74137e-6	1.0254e-6
chr15	45612797	45612896	14904370	0	+	0.353535	(0.33,0.36]	chr15	1172438	32	INTRON	INTRON	RP11-96O20.4:BLOC1S6	ENSG00000260170.1:ENSG00000104164.12	ENST00000564080.1:ENST00000564310.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.1284	5.29701	6.46562	0.00407303	3.77985e-9	0.0324137	3.34701e-7
chr17	42507573	42507627	16228671	0	+	0.555556	(0.53,0.59]	chr17	1312976	2	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.95825	5.296495	5.63474	2.87508e-4	7.53339e-6	0.00457439	2.17987e-4
chr5	76732907	76733006	6044919	0	+	0.545455	(0.53,0.59]	chr5	474229	7	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.95825	5.296495	5.63474	2.87508e-4	7.53339e-6	0.00457439	2.17987e-4
chr13	111277773	111277873	13899354	0	+	0.4	(0.39,0.42]	chr13	1089323	1	SS5_PROX	SS5_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000544132.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	5.00391	5.29647	5.58903	9.12714e-5	5.14263e-6	0.00182992	1.58468e-4
chr19	14406868	14406960	17242513	0	+	0.413043	(0.39,0.42]	chr19	1421861	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.00391	5.29647	5.58903	9.12714e-5	5.14263e-6	0.00182992	1.58468e-4
chr20	34585508	34585580	17947270	0	-	0.402778	(0.39,0.42]	chr20	1520049	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	5.00391	5.29647	5.58903	9.12714e-5	5.14263e-6	0.00182992	1.58468e-4
chr4	75533500	75533599	4891947	0	+	0.434343	(0.42,0.455]	chr4	402926	36	INTRON	INTRON	THAP6	ENSG00000174796.12	ENST00000507557.5:ENST00000507885.5:ENST00000504190.5:ENST00000507556.5:ENST00000502620.1	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	4.39894	5.296445	6.19395	3.61951e-6	1e-12	1.29307e-4	2.25522e-10
chr2	27202812	27202880	2569385	0	-	0.529412	(0.49,0.53]	chr2	231198	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6:ENST00000408041.5:ENST00000461319.5:ENST00000481751.5:ENST00000492069.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	5.19883	5.29641	5.39399	6.30063e-5	1.71804e-5	0.00124286	4.72485e-4
chr14	34569129	34569227	14577878	0	-	0.510204	(0.49,0.53]	chr14	1142038	1	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	5.24579	5.2963450000000005	5.3469	4.073e-5	2.75121e-5	9.64741e-4	6.30607e-4
chr17	79268103	79268203	16700275	0	-	0.64	(0.59,1]	chr17	1376413	319	INTRON	INTRON	RBFOX3	ENSG00000167281.19	ENST00000583458.5:ENST00000580155.5:ENST00000584778.5:ENST00000578887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.44671	5.29612	6.14553	0.00931497	5.79142e-6	0.0586162	1.75119e-4
chr3	37016620	37016718	4118137	0	-	0.622449	(0.59,1]	chr3	344290	2	EXON_PSEUDO	EXON_PSEUDO	RPL29P11	ENSG00000224858.5	ENST00000494408.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	54	2	4.7945	5.29602	5.79754	0.0031766	3.712e-5	0.0279054	8.06532e-4
chrX	120469105	120469169	19196462	0	-	0.640625	(0.59,1]	chrX	1632021	1	CDS_START	CDS_START:CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.2538	5.2959	5.338	5.85045e-4	3.196e-4	0.00793559	0.00457916
chr2	214847286	214847365	2374862	0	+	0.443038	(0.42,0.455]	chr2	213368	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	SNHG31:RPL10P6	ENSG00000229267.3:ENSG00000230076.1	ENST00000655899.1:ENST00000670391.1:ENST00000664818.1:ENST00000607412.1:ENST00000457497.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	92	2	4.75933	5.295845	5.83236	5.6476e-7	3.28355e-9	2.73442e-5	2.95937e-7
chr5	112902379	112902448	6767604	0	-	0.434783	(0.42,0.455]	chr5	519441	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	REEP5	ENSG00000129625.13	ENST00000379638.9:ENST00000513339.5:ENST00000497856.6:ENST00000511865.6:ENST00000261482.8:ENST00000504247.1:ENST00000474542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	4.39894	5.295605	6.19227	3.61951e-6	8.32224e-8	1.29307e-4	4.76997e-6
chr1	54045743	54045786	1027321	0	-	0.395349	(0.39,0.42]	chr1	106635	1	CDS	CDS:UTR5:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	4.98043	5.295005	5.60958	2.11003e-6	4.28317e-8	8.25026e-5	2.69344e-6
chr19	2733212	2733303	17425551	0	-	0.747253	(0.59,1]	chr19	1453655	5	CDS	CDS:EXON_MRNA:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9:ENST00000589363.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.7151	5.294639999999999	5.87418	0.00412279	2.5071e-5	0.0325842	5.82734e-4
chr8	86514434	86514530	9457242	0	+	0.645833	(0.59,1]	chr8	720188	1	UTR5	UTR5:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000621783.4:ENST00000620393.4:ENST00000621526.4:ENST00000622183.1:ENST00000621245.4:ENST00000523469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.7151	5.294639999999999	5.87418	0.00412279	2.5071e-5	0.0325842	5.82734e-4
chr1	23079552	23079609	97748	0	+	0.473684	(0.455,0.49]	chr1	11297	1	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.63978	5.2946	5.94942	6.94032e-4	4.68666e-7	0.00876781	2.08717e-5
chr3	33068229	33068290	4111677	0	-	0.540984	(0.53,0.59]	chr3	343529	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	126	2	4.5262	5.29416	6.06212	4.23179e-7	2.24887e-9	2.1371e-5	2.13668e-7
chr13	113320407	113320470	13908385	0	+	0.634921	(0.59,1]	chr13	1090353	2	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.22549	5.29376	5.36203	5.13843e-4	3.74697e-4	0.00665221	0.00560631
chr6	30490331	30490423	7111200	0	+	0.565217	(0.53,0.59]	chr6	544746	2	CDS	CDS:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5:ENST00000484194.1:ENST00000493699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	4.7916	5.29344	5.79528	2.61912e-6	2.73039e-7	9.89086e-5	1.31828e-5
chr6	85572297	85572367	7825361	0	-	0.385714	(0.36,0.39]	chr6	599525	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.24194	5.2931	6.34426	0.00276729	1.47018e-8	0.0247437	1.07983e-6
chr7	65974525	65974614	8834516	0	-	0.595506	(0.59,1]	chr7	674588	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1:ENST00000465785.5:ENST00000479038.1:ENST00000489482.1:ENST00000475316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	115	2	5.02927	5.2930399999999995	5.55681	1.60495e-4	2.73362e-7	0.00286914	1.31947e-5
chr11	123058809	123058830	12636972	0	-	0.571429	(0.53,0.59]	chr11	980706	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000524552.5:ENST00000526686.1:ENST00000533238.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	74	2	4.23022	5.29265	6.35508	1.38676e-5	4.77539e-8	3.5918e-4	3.2714e-6
chr11	62884456	62884525	11974447	0	+	0.536232	(0.53,0.59]	chr11	918056	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000546253.5:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	342	2	3.94175	5.292555	6.64336	3.37749e-7	1e-12	1.77431e-5	2.25522e-10
chr3	14139179	14139238	3319466	0	+	0.559322	(0.53,0.59]	chr3	292101	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	5.11707	5.292345	5.46762	1.35965e-4	1.97761e-5	0.00231202	5.29643e-4
chr3	177021228	177021328	4593439	0	-	0.36	(0.33,0.36]	chr3	379622	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	4.4046	5.291790000000001	6.17898	6.67963e-8	1.46676e-8	3.95923e-6	1.17924e-6
chr10	87552085	87552185	11173905	0	+	0.47	(0.455,0.49]	chr10	849135	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1:ENST00000472891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.97258	5.291565	5.61055	1.84876e-4	3.16146e-6	0.00296795	1.16228e-4
chr1	151176743	151176823	1292175	0	-	0.475	(0.455,0.49]	chr1	128992	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VPS72	ENSG00000163159.14	ENST00000368892.9:ENST00000354473.4:ENST00000496809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	5.07172	5.291075	5.51043	8.3067e-5	9.08728e-6	0.00171126	2.53877e-4
chr10	71818724	71818824	11563235	0	-	0.43	(0.42,0.455]	chr10	879966	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000495196.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	90	2	4.69374	5.2908550000000005	5.88797	3.72505e-7	6.00102e-9	1.92638e-5	5.00105e-7
chr20	1369932	1370028	17875169	0	-	0.458333	(0.455,0.49]	chr20	1512311	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000474726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	4.15342	5.290789999999999	6.42816	5.52725e-7	1.09292e-8	2.69113e-5	8.34724e-7
chr4	112565233	112565315	5056866	0	+	0.548781	(0.53,0.59]	chr4	410931	4	EXON_PSEUDO	EXON_PSEUDO	H3P14	ENSG00000250966.2	ENST00000321285.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	73	2	4.51944	5.29078	6.06212	2.00484e-6	4.23179e-7	7.16652e-5	2.1371e-5
chr15	74414891	74414946	15374478	0	-	0.509091	(0.49,0.53]	chr15	1215167	2	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	5.11868	5.290710000000001	5.46274	9.66505e-5	1.13094e-5	0.00175267	3.3464e-4
chr10	72096775	72096868	11563915	0	-	0.354839	(0.33,0.36]	chr10	880108	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000534259.1:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.96487	5.290645	5.61642	9.26851e-5	2.97369e-6	0.00185187	9.99199e-5
chr1	19232698	19232773	877277	0	-	0.506667	(0.49,0.53]	chr1	90467	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	4.14824	5.290195000000001	6.43215	2.04708e-5	1.33302e-8	5.45523e-4	9.93516e-7
chr3	187121144	187121200	4634837	0	-	0.428571	(0.42,0.455]	chr3	382956	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPL39L	ENSG00000163923.10	ENST00000433055.1:ENST00000296277.9:ENST00000455270.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.21187	5.290055000000001	5.36824	5.5797e-5	1.33083e-5	0.00112719	3.81624e-4
chr1	180196261	180196357	582906	0	+	0.635417	(0.59,1]	chr1	60580	1	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.13679	5.289575	5.44236	9.28022e-4	2.02004e-4	0.0111748	0.00317801
chr11	61799924	61800023	12405900	0	-	0.515152	(0.49,0.53]	chr11	960580	4	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.60051	5.28918	6.97785	4.14236e-6	1.04183e-10	1.45416e-4	1.40718e-8
chr10	69097157	69097231	11094094	0	+	0.472973	(0.455,0.49]	chr10	843396	2	CDS	CDS:EXON_MRNA:INTRON	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	181	2	4.96931	5.2890049999999995	5.6087	4.22699e-10	1e-12	4.89428e-8	2.46312e-10
chr12	34026243	34026338	12822289	0	+	0.421053	(0.42,0.455]	chr12	995601	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.86038	5.287325	5.71427	3.34791e-4	1.33053e-6	0.00472923	5.6008e-5
chr3	128632087	128632157	4441432	0	-	0.428571	(0.42,0.455]	chr3	369019	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	5.01562	5.287165	5.55871	1.01971e-4	2.52732e-10	0.0019861	3.08557e-8
chr22	38730902	38731002	18367577	0	+	0.41	(0.39,0.42]	chr22	1562698	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	219	2	5.16826	5.28704	5.40582	4.50628e-12	1e-12	8.60045e-10	2.46312e-10
chr7	128754358	128754455	8521694	0	+	0.525773	(0.49,0.53]	chr7	650169	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	16	677	2	4.92947	5.28698	5.64449	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	225404403	225404464	1528081	0	-	0.57377	(0.53,0.59]	chr1	152783	1	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000441022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	130	2	5.17106	5.286759999999999	5.40246	1.2921e-8	1.6811e-9	9.66948e-7	1.79426e-7
chr4	55411763	55411839	4843349	0	+	0.539474	(0.53,0.59]	chr4	398951	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1:ENST00000502797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.5586	5.286755	6.01491	0.00161229	6.18274e-7	0.0169168	2.65059e-5
chr17	35076736	35076826	16204885	0	+	0.466667	(0.455,0.49]	chr17	1308774	1	EXON_PSEUDO	EXON_PSEUDO	RP5-837J1.1	ENSG00000243423.1	ENST00000479840.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	59	2	3.81275	5.28652	6.76029	0.0138827	5.89697e-10	0.0760883	6.54492e-8
chr6	26285187	26285287	7647376	0	-	0.56	(0.53,0.59]	chr6	582595	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1:ENST00000377727.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	200	2	4.74366	5.286490000000001	5.82932	2.82178e-10	3.27953e-11	3.78301e-8	5.0249e-9
chr1	47075239	47075331	984586	0	-	0.445652	(0.42,0.455]	chr1	103991	6	EXON_PSEUDO	EXON_PSEUDO	TUBAP9	ENSG00000225154.2	ENST00000445574.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	42	2	4.54792	5.286365	6.0248100000000004	9.66045e-4	2.97136e-7	0.0115185	1.42027e-5
chr19	48384397	48384482	17601683	0	-	0.588235	(0.53,0.59]	chr19	1482715	3	CDS	CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5:ENST00000600980.1	protein_coding	protein_coding	protein_coding	protein_coding	10	332	2	4.0566	5.28591	6.51522	1.66758e-10	1e-12	2.12954e-8	2.46312e-10
chr7	103596455	103596523	8964250	0	-	0.514706	(0.49,0.53]	chr7	686264	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.55929	5.285455	6.01162	0.00116196	3.55916e-7	0.0130851	1.64926e-5
chr16	2519592	2519645	15493409	0	+	0.754717	(0.59,1]	chr16	1227535	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	2	140	2	4.1449	5.28529	6.42568	3.08027e-6	1.13013e-6	1.1442e-4	4.43062e-5
chr7	6466154	6466238	8664712	0	-	0.511905	(0.49,0.53]	chr7	662832	2	CDS	CDS:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	271	2	4.41521	5.28472	6.15423	5.11329e-10	1e-12	6.35131e-8	2.25522e-10
chr1	93897838	93897898	1175517	0	-	0.366667	(0.36,0.39]	chr1	115703	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1:ENST00000467772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.42503	5.2842199999999995	6.14341	0.00133228	7.63855e-8	0.0144372	4.42542e-6
chrX	135965023	135965123	19248583	0	-	0.41	(0.39,0.42]	chrX	1635140	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000681201.1:ENST00000679621.1:ENST00000680510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	5.10761	5.2841249999999995	5.46064	5.12039e-5	1.15573e-5	0.00114668	3.09736e-4
chr1	21879057	21879121	891266	0	-	0.578125	(0.53,0.59]	chr1	92545	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000480900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.00393	5.28404	6.56415	0.0108084	9.5574e-9	0.064368	7.4729e-7
chr11	6616314	6616408	12249948	0	-	0.62766	(0.59,1]	chr11	946853	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000436873.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	4	342	2	5.1138	5.28403	5.45426	2.06789e-8	2.43013e-10	1.58157e-6	2.99496e-8
chr4	87893619	87893718	4942252	0	+	0.535354	(0.53,0.59]	chr4	406011	19	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	133	2	4.94965	5.283975	5.6183	7.7867e-8	2.43197e-10	5.01111e-6	2.99496e-8
chr1	207757539	207757590	689838	0	+	0.45098	(0.42,0.455]	chr1	70064	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	204	2	4.61363	5.28381	5.95399	9.88178e-9	1e-12	8.42808e-7	2.25522e-10
chrX	66169336	66169431	18717294	0	+	0.378947	(0.36,0.39]	chrX	1596933	12	INTRON	INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.5:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	5.05914	5.2835	5.50786	1.67859e-8	3.0925e-10	1.32456e-6	3.71144e-8
chr11	2396803	2396866	11764981	0	+	0.539683	(0.53,0.59]	chr11	900179	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000526072.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	168	2	4.94801	5.283155	5.6183	8.07235e-10	2.43197e-10	9.50448e-8	2.99496e-8
chr3	14134830	14134891	3319416	0	+	0.47541	(0.455,0.49]	chr3	292077	2	CDS	CDS:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	3.28995	5.283105	7.27626	3.81851e-5	3.95051e-12	9.15499e-4	7.657e-10
chr14	96532248	96532330	14475880	0	+	0.268293	[0,0.29]	chr14	1130816	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PAPOLA	ENSG00000090060.19	ENST00000618976.2:ENST00000216277.13:ENST00000553357.5:ENST00000553689.5:ENST00000557320.5:ENST00000392990.6:ENST00000555626.5:ENST00000555224.1:ENST00000553461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	4.51722	5.2830200000000005	6.04882	3.98452e-8	2.38992e-8	2.80884e-6	1.64263e-6
chr12	56640050	56640121	13352128	0	-	0.56338	(0.53,0.59]	chr12	1051745	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000550162.1:ENST00000552959.5:ENST00000551570.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	227	2	4.87973	5.28301	5.68629	1.51449e-9	1e-12	1.64416e-7	2.25522e-10
chr14	100732041	100732112	14489580	0	+	0.633803	(0.59,1]	chr14	1132117	1	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000392848.9:ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	4	415	2	4.46453	5.282769999999999	6.10101	3.99622e-7	1.02673e-12	2.04183e-5	2.31103e-10
chr1	19239817	19239901	877360	0	-	0.47619	(0.455,0.49]	chr1	90509	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000467423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	4.46858	5.28265	6.09672	2.38087e-6	8.84067e-8	8.3081e-5	5.61099e-6
chr12	1780888	1780982	12688957	0	+	0.37234	(0.36,0.39]	chr12	984472	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5:ENST00000537190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	5.20331	5.28261	5.36191	2.53222e-5	1.79406e-5	6.51851e-4	4.45904e-4
chr15	89195226	89195323	15093440	0	+	0.56701	(0.53,0.59]	chr15	1187098	1	CDS	CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.03705	5.282355	5.52766	0.00020199200000000001	1.38993e-5	0.00317801	3.94563e-4
chr1	156312040	156312130	1314055	0	-	0.511111	(0.49,0.53]	chr1	133417	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	115	2	5.13438	5.28233	5.43028	1.12849e-8	9.03974e-10	9.4322e-7	9.62406e-8
chr6	32830617	32830711	7667153	0	-	0.574468	(0.53,0.59]	chr6	586787	1	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4:ENST00000464100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	5.04298	5.28233	5.52168	1.91383e-4	1.48967e-5	0.0032874	3.81697e-4
chr7	16462884	16462963	8702275	0	-	0.56962	(0.53,0.59]	chr7	664605	4	CDS	CDS:EXON_MRNA:INTRON	CRPPA:SOSTDC1	ENSG00000214960.11:ENSG00000171243.8	ENST00000675257.1:ENST00000674759.1:ENST00000307068.5:ENST00000396652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	5.04298	5.28233	5.52168	1.91383e-4	1.48967e-5	0.0032874	3.81697e-4
chr19	3605832	3605930	17427989	0	-	0.469388	(0.455,0.49]	chr19	1454174	48	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.77318	5.282305	5.79143	4.7888e-4	8.96581e-7	0.00628636	4.03386e-5
chr12	56137586	56137675	12898353	0	+	0.494382	(0.49,0.53]	chr12	1004272	2	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000547667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	5.08061	5.280895	5.48118	1.00361e-4	1.24248e-5	0.00196575	3.28918e-4
chr19	45687652	45687717	17590097	0	-	0.523077	(0.49,0.53]	chr19	1480428	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	SNRPD2	ENSG00000125743.11	ENST00000342669.8:ENST00000585392.2:ENST00000587367.5:ENST00000588301.5:ENST00000391932.7:ENST00000588599.5:ENST00000590212.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.79086	5.28075	5.77064	4.20783e-4	1.94063e-6	0.00611538	6.9799e-5
chr3	47916420	47916514	4164423	0	-	0.521277	(0.49,0.53]	chr3	348579	6	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.79086	5.28075	5.77064	4.20783e-4	1.94063e-6	0.00611538	6.9799e-5
chrX	66189768	66189853	18717511	0	+	0.447059	(0.42,0.455]	chrX	1596971	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	175	2	3.97694	5.280505	6.58407	2.22686e-6	1e-12	8.65681e-5	2.25522e-10
chr13	46782728	46782791	14012332	0	-	0.460317	(0.455,0.49]	chr13	1098864	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.76048	5.280245000000001	5.80001	3.99985e-4	1.35407e-6	0.00588767	5.16241e-5
chr1	91721954	91722049	1164393	0	-	0.410526	(0.39,0.42]	chr1	114936	1	CDS	CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000529608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.14886	5.27933	6.4098	0.00415881	1.13257e-8	0.0325842	8.6123e-7
chrX	73223297	73223384	18738611	0	+	0.390805	(0.39,0.42]	chrX	1599228	3	EXON_PSEUDO	EXON_PSEUDO	TOMM20P4	ENSG00000230311.2	ENST00000427861.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	48	2	4.14886	5.27933	6.4098	0.00415881	1.13257e-8	0.0325842	8.6123e-7
chr1	11964174	11964237	45387	0	+	0.634921	(0.59,1]	chr1	5771	1	CDS	CDS:EXON_MRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	4.64046	5.279045	5.91763	2.85329e-5	3.26241e-6	7.16403e-4	1.08317e-4
chr12	91350124	91350224	13015592	0	+	0.39	(0.36,0.39]	chr12	1013087	52	INTRON	INTRON	LINC02823	ENSG00000258100.3	ENST00000661839.1:ENST00000669621.1:ENST00000660548.1:ENST00000651000.1:ENST00000667542.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.98743	5.2780249999999995	5.56862	8.82225e-5	4.90567e-6	0.00178337	1.526e-4
chr12	34025957	34026052	12822286	0	+	0.347368	(0.33,0.36]	chr12	995601	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000541178.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	5.25308	5.27797	5.30286	2.94355e-5	1.23392e-5	6.67979e-4	3.58359e-4
chr10	32188520	32188619	11442265	0	-	0.464646	(0.455,0.49]	chr10	872504	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP31	ENSG00000217094.2	ENST00000405422.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	64	2	4.16204	5.277925	6.39381	1.83061e-5	1.45725e-8	4.99708e-4	1.07259e-6
chr15	78934992	78935082	15398727	0	-	0.477778	(0.455,0.49]	chr15	1217591	7	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000528191.6:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000679047.1:ENST00000676865.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000677320.1:ENST00000529612.6:ENST00000529263.7:ENST00000534038.6:ENST00000530929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	148	2	5.17856	5.277925	5.37729	6.33888e-9	6.61771e-12	5.71684e-7	1.20564e-9
chr1	19219415	19219482	877133	0	-	0.462687	(0.455,0.49]	chr1	90426	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000461353.1:ENST00000486405.1:ENST00000486238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	5.22794	5.2777650000000005	5.32759	4.80556e-5	1.92345e-5	9.91058e-4	5.18397e-4
chr12	50130254	50130350	13327653	0	-	0.447917	(0.42,0.455]	chr12	1046435	11	UTR3	UTR3:EXON_MRNA	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000550919.5:ENST00000553122.5:ENST00000547787.5:ENST00000551005.5:ENST00000546406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	4.72292	5.27764	5.83236	5.6476e-7	3.66958e-7	2.73442e-5	1.6957e-5
chr7	149011924	149012004	9124821	0	-	0.55	(0.53,0.59]	chr7	696976	2	CDS	CDS:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	5	283	2	4.40638	5.27758	6.14878	6.51208e-9	1e-12	5.85031e-7	2.25522e-10
chr8	127741057	127741157	9612681	0	+	0.33	(0.29,0.33]	chr8	728500	2	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	5.22713	5.27656	5.32599	4.3297e-9	1.44019e-9	4.08288e-7	1.45177e-7
chr17	66755729	66755829	16326270	0	+	0.5	(0.49,0.53]	chr17	1324567	126	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.63338	5.276365	5.91935	9.56909e-4	5.27035e-7	0.010724	2.57927e-5
chr11	61802800	61802863	12405930	0	-	0.571429	(0.53,0.59]	chr11	960585	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5:ENST00000496123.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	154	2	3.17892	5.27602	7.37312	3.4817e-6	6.80789e-12	1.26023e-4	1.23641e-9
chr3	156554989	156555089	4538796	0	-	0.58	(0.53,0.59]	chr3	376116	1	CDS_START	CDS_START:CDS:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	220	2	5.04473	5.275905	5.50708	3.26163e-10	3.5848e-12	4.30364e-8	7.02625e-10
chr19	16234879	16234968	17248330	0	+	0.539326	(0.53,0.59]	chr19	1423193	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	AP1M1	ENSG00000072958.9	ENST00000590756.5:ENST00000291439.8:ENST00000444449.6:ENST00000586543.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	4.66193	5.275875	5.88982	1.39814e-6	7.20737e-7	5.82056e-5	3.019e-5
chr19	53873629	53873725	17388660	0	+	0.6875	(0.59,1]	chr19	1446781	1	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000651087.1:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000448420.5:ENST00000391769.2:ENST00000391768.2:ENST00000414489.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.74378	5.275435	5.80709	0.00312942	4.94887e-5	0.0264364	0.00112479
chr10	87790369	87790430	11608243	0	-	0.393443	(0.39,0.42]	chr10	884067	2	CDS	CDS:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1:ENST00000495903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.49324	5.275125	6.05701	0.00108192	1.91744e-7	0.0124943	9.81202e-6
chr22	37888558	37888652	18364794	0	+	0.404255	(0.39,0.42]	chr22	1562214	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000652021.1:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1:ENST00000460638.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	41	2	4.49324	5.275125	6.05701	0.00108192	1.91744e-7	0.0124943	9.81202e-6
chr1	101786925	101787023	1200899	0	-	0.5	(0.49,0.53]	chr1	117316	7	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	66	2	4.25722	5.27511	6.293	1.00699e-5	4.1349e-8	3.03291e-4	2.61265e-6
chrX	48462232	48462291	19062775	0	-	0.525424	(0.49,0.53]	chrX	1620403	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	103	2	4.13817	5.27505	6.41193	5.61303e-8	1.09526e-8	3.39862e-6	9.21346e-7
chr2	173954969	173955066	3020153	0	-	0.494845	(0.49,0.53]	chr2	267378	2	CDS	CDS:EXON_MRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	5.08338	5.27306	5.46274	1.13094e-5	2.00613e-8	3.3464e-4	1.40889e-6
chr11	75566797	75566884	12023330	0	+	0.62069	(0.59,1]	chr11	927007	5	CDS	CDS:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	571	2	5.18508	5.272905	5.36073	6.78018e-10	6.84319e-12	8.14374e-8	1.24089e-9
chr7	92128932	92129032	8922261	0	-	0.41	(0.39,0.42]	chr7	680672	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	160	2	5.0186	5.27272	5.52684	1.73069e-10	9.31188e-12	2.45247e-8	1.62763e-9
chr15	29718020	29718118	15183958	0	-	0.44898	(0.42,0.455]	chr15	1195111	1	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	4.82853	5.2714	5.71427	1.33053e-6	1.59873e-7	5.6008e-5	8.38121e-6
chr20	10609616	10609716	17685725	0	+	0.47	(0.455,0.49]	chr20	1494529	74	INTRON	INTRON	SLX4IP	ENSG00000149346.15	ENST00000334534.10:ENST00000488816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	5.21452	5.2710550000000005	5.32759	1.92345e-5	5.82738e-9	5.18397e-4	4.88601e-7
chr6	26020800	26020900	7100984	0	+	0.62	(0.59,1]	chr6	542743	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C1	ENSG00000275714.2	ENST00000613854.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.63106	5.271039999999999	5.91102	0.00537945	2.06903e-5	0.0406564	4.99825e-4
chr19	44871951	44872050	17349312	0	+	0.606061	(0.59,1]	chr19	1439137	2	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.53648	5.27076	7.00504	0.00107706	2.67195e-8	0.0124943	1.80483e-6
chr11	75404163	75404207	12023092	0	+	0.568182	(0.53,0.59]	chr11	926985	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	426	2	5.14272	5.2705	5.39828	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	179917844	179917942	580801	0	+	0.44898	(0.42,0.455]	chr1	60265	5	CDS	CDS:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.11218	5.270435	5.42869	6.01815e-5	1.60756e-5	0.00130886	4.07445e-4
chr7	65960896	65960996	8834373	0	-	0.44	(0.42,0.455]	chr7	674559	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	5.11218	5.270435	5.42869	6.01815e-5	1.60756e-5	0.00130886	4.07445e-4
chr8	66113419	66113507	9375211	0	+	0.511364	(0.49,0.53]	chr8	716186	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	AC084082.3	ENSG00000253190.4	ENST00000520930.1:ENST00000671118.1:ENST00000659894.1:ENST00000660814.1:ENST00000655427.1:ENST00000652875.1:ENST00000517961.3:ENST00000653437.1:ENST00000663048.1	lncRNA	lncRNA	lncRNA	lncRNA	153	5847	2	5.18492	5.27009	5.35526	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	56132208	56132270	12898282	0	+	0.532258	(0.53,0.59]	chr12	1004230	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	4.5672	5.2698599999999995	5.97252	1.40998e-6	8.30115e-7	5.86085e-5	3.4056e-5
chrX	109642531	109642631	19168163	0	-	0.29	[0,0.29]	chrX	1630379	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL4	ENSG00000068366.21	ENST00000505075.1:ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	72	2	4.90174	5.269855	5.63797	6.77607e-8	7.14913e-11	4.00822e-6	1.10694e-8
chr11	85096675	85096775	12518782	0	-	0.49	(0.455,0.49]	chr11	971920	752	INTRON	INTRON	DLG2	ENSG00000150672.18	ENST00000376104.7:ENST00000650630.1:ENST00000527088.1	protein_coding	protein_coding	protein_coding	protein_coding	5	235	2	4.39705	5.269745	6.14244	4.29972e-9	1e-12	4.06931e-7	2.25522e-10
chr1	12208020	12208120	47309	0	+	0.42	(0.39,0.42]	chr1	6130	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	5.24369	5.269355	5.29502	4.15285e-5	1.68146e-5	8.8376e-4	4.64895e-4
chr8	128041266	128041364	9615219	0	+	0.397959	(0.39,0.42]	chr8	728683	10	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	5.24369	5.269355	5.29502	4.15285e-5	1.68146e-5	8.8376e-4	4.64895e-4
chr19	54174143	54174231	17627658	0	-	0.613636	(0.59,1]	chr19	1488017	1	CDS	CDS:UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	134	2	3.74447	5.269305	6.79414	2.8028e-5	1.89941e-7	6.41211e-4	1.08933e-5
chr21	22069751	22069851	18183596	0	-	0.38	(0.36,0.39]	chr21	1543630	69	INTRON	INTRON	LINC01687	ENSG00000233215.6	ENST00000669715.1:ENST00000420255.1	lncRNA	lncRNA	lncRNA	lncRNA	3	187	2	3.60784	5.269155	6.93047	3.79774e-5	1e-12	9.11358e-4	2.25522e-10
chr1	161001284	161001353	1331465	0	-	0.478261	(0.455,0.49]	chr1	136457	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	5.16215	5.269119999999999	5.37609	5.04348e-5	2.05373e-5	0.00113788	4.97369e-4
chrX	74031538	74031615	18741246	0	+	0.519481	(0.49,0.53]	chrX	1599351	2	EXON_PSEUDO	EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	JPX:RPSAP14	ENSG00000225470.8:ENSG00000233984.1	ENST00000640437.1:ENST00000602772.5:ENST00000429143.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	72	2	3.83319	5.26831	6.70343	1.34601e-4	1.29474e-9	0.00249552	1.3204e-7
chr1	25385710	25385777	904025	0	-	0.507463	(0.49,0.53]	chr1	94014	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	4.77195	5.268255	5.76456	1.57714e-6	2.57118e-7	6.4504e-5	1.25706e-5
chr11	62639375	62639467	12409863	0	-	0.576087	(0.53,0.59]	chr11	961320	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	326	2	4.91906	5.267765	5.61647	1.108e-12	1.07159e-12	2.70364e-10	2.39806e-10
chr19	48795152	48795243	17603658	0	-	0.637363	(0.59,1]	chr19	1483207	2	UTR3	UTR3:EXON_MRNA	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.22549	5.26721	5.30893	5.13843e-4	4.67312e-4	0.00665221	0.00661038
chr2	215312048	215312142	2376886	0	+	0.723404	(0.59,1]	chr2	213484	2	UTR5	UTR5:EXON_MRNA	ATIC	ENSG00000138363.15	ENST00000444305.5:ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	5.22549	5.26721	5.30893	5.13843e-4	4.67312e-4	0.00665221	0.00661038
chr1	268666	268741	820360	0	-	0.506667	(0.49,0.53]	chr1	81285	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP006222.1	ENSG00000228463.10	ENST00000448958.2:ENST00000441866.2:ENST00000634344.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	38	2	4.99034	5.26712	5.5439	1.6002e-4	8.44877e-6	0.00286408	2.39255e-4
chr8	143654444	143654542	9648580	0	+	0.377551	(0.36,0.39]	chr8	731147	31	UTR3	UTR3:EXON_MRNA	ZNF623	ENSG00000183309.12	ENST00000501748.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	5.0994	5.266775	5.43415	4.68763e-5	1.15393e-5	0.00107286	3.09736e-4
chr1	43364015	43364076	968540	0	-	0.442623	(0.42,0.455]	chr1	102050	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	4.75899	5.266755	5.77452	8.63204e-7	2.77134e-7	3.91474e-5	1.3349e-5
chr1	111120604	111120693	1223972	0	-	0.404494	(0.39,0.42]	chr1	119654	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000480600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.77106	5.26675	5.76244	3.03764e-4	1.61725e-6	0.00472028	5.98677e-5
chr2	20040890	20040950	2539807	0	-	0.416667	(0.39,0.42]	chr2	228431	1	CDS	CDS:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.77106	5.26675	5.76244	3.03764e-4	1.61725e-6	0.00472028	5.98677e-5
chr6	26031588	26031649	7646925	0	-	0.393443	(0.39,0.42]	chr6	582486	1	UTR3	UTR3:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	13	488	2	4.9519	5.266065	5.58023	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	41032028	41032128	15233158	0	-	0.58	(0.53,0.59]	chr15	1198884	39	INTRON	INTRON	INO80	ENSG00000128908.17	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000616814.4:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.55274	5.265639999999999	5.97854	0.00167999	7.61837e-7	0.0164993	3.51585e-5
chr5	139477328	139477421	6867221	0	-	0.569892	(0.53,0.59]	chr5	525692	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000652293.1:ENST00000651565.1:ENST00000652640.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.5586	5.265560000000001	5.97252	0.00161229	8.30115e-7	0.0169168	3.4056e-5
chr18	59353201	59353301	17142576	0	-	0.5	(0.49,0.53]	chr18	1407650	1	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	192	2	5.24438	5.26523	5.28608	4.21859e-9	1e-12	4.00158e-7	2.25522e-10
chr16	69168837	69168937	15721886	0	+	0.44	(0.42,0.455]	chr16	1251880	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000567500.1:ENST00000567287.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.91213	5.264635	5.61714	1.75074e-4	4.98624e-6	0.00306313	1.54467e-4
chr1	180196550	180196647	582909	0	+	0.659794	(0.59,1]	chr1	60580	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.44671	5.264515	6.08232	0.00931497	8.23309e-6	0.0586162	2.34786e-4
chr15	52095475	52095565	14935570	0	+	0.388889	(0.36,0.39]	chr15	1174249	3	EXON_PSEUDO	EXON_PSEUDO	CTD-2184D3.1	ENSG00000242327.1	ENST00000486386.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	66	2	5.22844	5.264335	5.30023	1.38946e-5	4.38129e-9	3.94563e-4	3.79596e-7
chr4	165341750	165341846	5206954	0	+	0.395833	(0.39,0.42]	chr4	420283	1	CDS	CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	15	607	2	4.81776	5.2638750000000005	5.70999	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	163570809	163570909	7540835	0	+	0.4	(0.39,0.42]	chr6	575649	2	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8:ENST00000537883.5:ENST00000541696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.84764	5.2631	5.67856	1.29189e-6	1.2868e-7	5.48279e-5	6.93987e-6
chr12	6943815	6943878	12715710	0	+	0.428571	(0.42,0.455]	chr12	987333	1	EXON_SMALL	EXON_SMALL:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C12orf57:RNU7-1	ENSG00000111678.11:ENSG00000238923.1	ENST00000538392.1:ENST00000542222.1:ENST00000545581.5:ENST00000458811.1:ENST00000544681.1:ENST00000537087.5	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:retained_intron:processed_transcript	7	259	2	4.73017	5.262825	5.79548	3.99847e-12	1e-12	7.71994e-10	2.46312e-10
chr1	55058572	55058647	203793	0	+	0.666667	(0.59,1]	chr1	26160	2	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	424	2	3.58327	5.26241	6.94155	4.7067e-6	1e-12	1.62873e-4	2.25522e-10
chr8	140525849	140525949	10132101	0	-	0.58	(0.53,0.59]	chr8	760954	58	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	5.11707	5.26102	5.40497	1.35965e-4	2.83308e-5	0.00231202	7.12614e-4
chr16	31528524	31528591	15635495	0	+	0.567164	(0.53,0.59]	chr16	1241822	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHSP	ENSG00000169877.10	ENST00000302312.9:ENST00000569954.1:ENST00000564707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	5.12301	5.261005	5.399	1.2852e-4	3.02387e-5	0.00241206	6.78876e-4
chrX	153694198	153694267	18915628	0	+	0.521739	(0.49,0.53]	chrX	1611192	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	149	2	5.17411	5.260345	5.34658	1.64928e-9	6.23597e-11	1.76661e-7	8.94579e-9
chr1	33012987	33013083	924453	0	-	0.385417	(0.36,0.39]	chr1	97516	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000491241.1:ENST00000467905.5:ENST00000480134.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	5.01657	5.25976	5.50295	7.4907e-6	2.48224e-8	2.17853e-4	1.84654e-6
chr8	86504668	86504766	9457238	0	+	0.5	(0.49,0.53]	chr8	720187	12	EXON_PSEUDO	EXON_PSEUDO	SLC2A3P4	ENSG00000254088.1	ENST00000521259.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	66	2	4.7007	5.259365000000001	5.81803	1.08721e-6	4.46291e-7	4.73591e-5	2.00907e-5
chr17	58331231	58331318	16612570	0	-	0.448276	(0.42,0.455]	chr17	1364727	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:PRIMIRNA	MIR142:RP5-1171I10.5	ENSG00000284353.1:ENSG00000265206.5	ENST00000384835.3:ENST00000579003.1	miRNA	miRNA	miRNA:lncRNA	miRNA:lncRNA:primary_miRNA	3	117	2	4.74413	5.2593250000000005	5.77452	8.63204e-7	1.84149e-10	3.91474e-5	2.33199e-8
chr9	137096791	137096891	10514619	0	+	0.59	(0.53,0.59]	chr9	796971	4	SS5_PROX	SS5_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000683113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.30776	5.258875	6.20999	0.00407289	1.51461e-7	0.0324137	8.00634e-6
chr20	35557031	35557109	17769477	0	+	0.602564	(0.59,1]	chr20	1501145	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000413587.5:ENST00000465298.1:ENST00000442139.5:ENST00000451605.1:ENST00000488935.5:ENST00000488384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.10346	5.258355	5.41325	8.40506e-4	3.01546e-4	0.00981548	0.00472028
chr4	77034806	77034904	4900534	0	+	0.469388	(0.455,0.49]	chr4	403559	4	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000510515.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	5.07172	5.2582699999999996	5.44482	8.3067e-5	1.36044e-5	0.00171126	3.54469e-4
chr17	44012027	44012096	16555921	0	-	0.565217	(0.53,0.59]	chr17	1358815	1	CDS	CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	4.82227	5.25819	5.69411	5.01544e-6	2.15841e-7	1.7067e-4	1.08163e-5
chr3	156555089	156555149	4538797	0	-	0.716667	(0.59,1]	chr3	376117	1	UTR5	UTR5:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	134	2	4.11936	5.25779	6.39622	2.95054e-6	2.12179e-6	9.93235e-5	8.29002e-5
chr3	40457291	40457360	3429560	0	+	0.623188	(0.59,1]	chr3	298300	1	UTR5	UTR5:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000465325.1:ENST00000396203.7:ENST00000416518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	2109	2	4.45138	5.257065000000001	6.06275	6.13399e-11	1e-12	9.65505e-9	2.25522e-10
chr8	56074446	56074510	9834827	0	-	0.546875	(0.53,0.59]	chr8	744209	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS20	ENSG00000008988.11	ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000519606.5:ENST00000521289.5:ENST00000518875.5:ENST00000519369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	53	2323	2	5.14708	5.256505	5.36593	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	26411478	26411575	9238665	0	+	0.42268	(0.42,0.455]	chr8	707583	12	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	4.92694	5.25629	5.58564	3.24669e-6	7.19661e-8	1.18495e-4	4.21199e-6
chr5	177595266	177595316	6407895	0	+	0.66	(0.59,1]	chr5	498330	1	CDS	CDS:EXON_MRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000507723.1:ENST00000513799.5:ENST00000510499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	158	2	3.60619	5.255915	6.90564	1.12889e-5	9.29604e-8	3.05332e-4	5.86968e-6
chr1	45566924	45567024	174776	0	+	0.59	(0.53,0.59]	chr1	22652	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1:ENST00000497973.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.77222	5.255895	5.73957	6.67251e-4	3.90343e-6	0.00867533	1.26306e-4
chr9	76398698	76398796	10312895	0	+	0.510204	(0.49,0.53]	chr9	776488	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP9	ENSG00000234618.1	ENST00000418207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	111	2	5.18979	5.25579	5.32179	2.63311e-5	5.32431e-11	6.73425e-4	7.76895e-9
chr19	46784516	46784597	17595558	0	-	0.469136	(0.455,0.49]	chr19	1481418	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	8	300	2	4.13053	5.2557100000000005	6.38089	4.19314e-10	1e-12	5.36006e-8	2.25522e-10
chr9	79391394	79391485	10321106	0	+	0.659341	(0.59,1]	chr9	777292	2	EXON_PSEUDO	EXON_PSEUDO	CHCHD2P9	ENSG00000186940.6	ENST00000461726.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	132	2	3.88055	5.255605	6.63066	1.27063e-5	5.25661e-7	3.34717e-4	2.57927e-5
chrX	66197682	66197752	18717595	0	+	0.542857	(0.53,0.59]	chrX	1596996	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	4.09676	5.2553	6.41384	3.14727e-5	3.18937e-8	7.72298e-4	2.10263e-6
chr11	3827172	3827269	12238978	0	-	0.56701	(0.53,0.59]	chr11	945691	3	UTR3	UTR3:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	4.18853	5.25504	6.32155	5.25589e-7	6.18792e-8	2.31205e-5	4.08886e-6
chr16	89560676	89560680	15810075	0	+	0.5	(0.49,0.53]	chr16	1258666	1	EXON_MRNA	EXON_MRNA	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5	protein_coding	retained_intron	protein_coding	retained_intron	1	64	2	4.49833	5.254975	6.01162	1.88388e-6	3.55916e-7	7.53959e-5	1.64926e-5
chr4	61775608	61775689	5441315	0	-	0.444444	(0.42,0.455]	chr4	435486	3	EXON_PSEUDO	EXON_PSEUDO	RP11-621K7.1	ENSG00000226439.3	ENST00000461060.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	60	2	4.39894	5.254955	6.11097	3.61951e-6	1.55657e-7	1.29307e-4	8.1934e-6
chr1	116536140	116536228	1243557	0	-	0.431818	(0.42,0.455]	chr1	121877	3	CDS	CDS:EXON_MRNA:INTRON	CD58	ENSG00000116815.16	ENST00000369489.10:ENST00000464088.5:ENST00000457047.6:ENST00000526981.1:ENST00000369487.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	5.01562	5.25495	5.49428	1.01971e-4	1.07978e-5	0.0019861	2.9314e-4
chr5	76733105	76733204	6044921	0	+	0.50505	(0.49,0.53]	chr5	474229	9	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.74438	5.2544699999999995	5.76456	5.91752e-4	1.57714e-6	0.00743488	6.4504e-5
chr9	123390845	123390944	10844010	0	-	0.575758	(0.53,0.59]	chr9	821682	26	INTRON	INTRON	DENND1A	ENSG00000119522.16	ENST00000373624.6:ENST00000473039.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.21941	5.2543299999999995	7.28925	0.00266171	1.52468e-11	0.0240332	2.54757e-9
chr1	52772375	52772466	1020667	0	-	0.351648	(0.33,0.36]	chr1	105869	3	EXON_PSEUDO	EXON_PSEUDO	RPS13P2	ENSG00000228929.1	ENST00000437890.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	432	2	5.2219	5.254	5.2861	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	11436409	11436505	17231124	0	+	0.552083	(0.53,0.59]	chr19	1419876	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000591946.5:ENST00000589126.5:ENST00000588269.1:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	364	2	4.55787	5.25381	5.94975	2.11869e-10	1e-12	2.93265e-8	2.25522e-10
chr12	122208110	122208200	13588278	0	-	0.477778	(0.455,0.49]	chr12	1069997	6	UTR3	UTR3:EXON_MRNA	RP11-512M8.12:DIABLO:RP11-512M8.13	ENSG00000284934.2:ENSG00000184047.20:ENSG00000256861.1	ENST00000645606.1:ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000535844.1:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.55476	5.253445	5.95213	1.27404e-6	2.72823e-7	4.90986e-5	1.4763e-5
chr19	49684921	49684979	17372117	0	+	0.482759	(0.455,0.49]	chr19	1443532	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRMT1	ENSG00000126457.22	ENST00000532489.5:ENST00000527382.5:ENST00000534465.6:ENST00000610806.4:ENST00000391851.8:ENST00000534676.5:ENST00000454376.7:ENST00000525616.1:ENST00000524771.5:ENST00000530070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	4.55476	5.253445	5.95213	1.27404e-6	2.72823e-7	4.90986e-5	1.4763e-5
chr1	154257062	154257160	480006	0	+	0.540816	(0.53,0.59]	chr1	49691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000489076.1:ENST00000433615.5:ENST00000428595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	165	2	4.77084	5.253295	5.73575	4.05513e-9	8.05113e-11	3.86938e-7	1.12266e-8
chr5	179722803	179722875	6414393	0	+	0.402778	(0.39,0.42]	chr5	499189	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	201	2	5.18565	5.2528500000000005	5.32005	1.3985e-9	1e-12	1.52857e-7	2.25522e-10
chr12	107544002	107544070	13073902	0	+	0.602941	(0.59,1]	chr12	1018694	2	CDS	CDS:EXON_MRNA	BTBD11	ENSG00000151136.15	ENST00000420571.6:ENST00000280758.10:ENST00000490090.6:ENST00000550706.5:ENST00000415943.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.63106	5.25262	5.87418	0.00537945	2.5071e-5	0.0406564	5.82734e-4
chr19	11345251	11345332	17462778	0	-	0.567901	(0.53,0.59]	chr19	1461661	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	RAB3D:TMEM205	ENSG00000105514.8:ENSG00000105518.14	ENST00000589655.1:ENST00000447337.5:ENST00000593256.6:ENST00000586218.5:ENST00000586956.5:ENST00000354882.10:ENST00000586590.5:ENST00000585722.1:ENST00000587948.5:ENST00000589555.5:ENST00000588560.5:ENST00000588321.1:ENST00000586701.1:ENST00000592952.5:ENST00000590482.5:ENST00000591677.5:ENST00000590788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	5.03705	5.252335	5.46762	0.00020199200000000001	1.97761e-5	0.00317801	5.29643e-4
chr7	30923449	30923529	8206207	0	+	0.5875	(0.53,0.59]	chr7	626038	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000482461.1:ENST00000409899.5:ENST00000409611.1:ENST00000651610.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	234	2	4.63245	5.252255	5.87206	1.37044e-8	1e-12	1.1138e-6	2.25522e-10
chr9	113948437	113948537	10428474	0	+	0.49	(0.455,0.49]	chr9	785145	717	INTRON	INTRON	ZNF618	ENSG00000157657.14	ENST00000615615.4:ENST00000288466.11:ENST00000374126.9:ENST00000374124.4:ENST00000452710.5:ENST00000481558.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.50805	5.252015	5.99598	0.00122223	3.33072e-7	0.0135383	1.56608e-5
chr19	19120029	19120106	17502054	0	-	0.649351	(0.59,1]	chr19	1468647	1	CDS	CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000591443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	101	2	4.29743	5.251755	6.20608	2.81132e-5	4.1102e-6	7.10133e-4	1.31763e-4
chr2	27203232	27203288	2569390	0	-	0.571429	(0.53,0.59]	chr2	231200	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000461319.5:ENST00000492069.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.86823	5.251485	5.63474	4.35895e-4	7.53339e-6	0.00623608	2.17987e-4
chr1	161851749	161851835	502738	0	+	0.476744	(0.455,0.49]	chr1	54548	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1:ENST00000476437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	94	2	4.89183	5.251189999999999	5.61055	3.16146e-6	8.9596e-10	1.16228e-4	9.55331e-8
chr2	219216651	219216741	3191236	0	-	0.522222	(0.49,0.53]	chr2	280835	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.67972	5.250945	5.82217	6.94757e-4	1.36598e-6	0.00876781	5.18684e-5
chr1	179347599	179347697	576454	0	+	0.428571	(0.42,0.455]	chr1	59833	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	5.13339	5.250815	5.36824	1.33083e-5	1.25253e-8	3.81624e-4	9.39958e-7
chr19	45478535	45478635	17588741	0	-	0.49	(0.455,0.49]	chr19	1480158	4	SS5_PROX	SS5_PROX:INTRON	ERCC1	ENSG00000012061.16	ENST00000423698.6	protein_coding	protein_coding	protein_coding	protein_coding	47	1680	2	4.73241	5.250185	5.76796	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	46902667	46902767	2629809	0	-	0.41	(0.39,0.42]	chr2	236786	9	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	5.10761	5.249745	5.39188	5.12039e-5	1.75441e-5	0.00114668	4.38078e-4
chr15	89175903	89175995	15093240	0	+	0.543478	(0.53,0.59]	chr15	1187063	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	4.86312	5.24893	5.63474	7.53339e-6	1.54273e-7	2.17987e-4	9.14919e-6
chr7	29095083	29095142	8745246	0	-	0.508475	(0.49,0.53]	chr7	667289	1	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5:ENST00000458405.5:ENST00000447426.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	5.08061	5.248105000000001	5.4156	1.00361e-4	1.84143e-5	0.00196575	4.53637e-4
chr2	20037315	20037376	2539770	0	-	0.377049	(0.36,0.39]	chr2	228423	1	CDS	CDS:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	4.23248	5.2479499999999994	6.26342	1.28371e-5	1e-12	3.70041e-4	2.25522e-10
chr19	39837776	39837843	17563520	0	-	0.537313	(0.53,0.59]	chr19	1475741	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	4.70625	5.2477599999999995	5.78927	2.83401e-6	5.10843e-7	9.62519e-5	2.51654e-5
chr3	40761714	40761799	3431061	0	+	0.529412	(0.49,0.53]	chr3	298456	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-761N21.1:RP11-761N21.2	ENSG00000231873.2:ENSG00000234287.1	ENST00000665970.1:ENST00000457554.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	150	2	5.24438	5.2476199999999995	5.25086	4.21859e-9	2.86495e-11	4.00158e-7	4.4541e-9
chr6	109368850	109368950	7886669	0	-	0.36	(0.33,0.36]	chr6	603691	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	382	2	5.18338	5.24759	5.3118	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	53273219	53273281	7740217	0	-	0.564516	(0.53,0.59]	chr6	594351	1	CDS	CDS:EXON_MRNA:INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	5	224	2	4.68354	5.246589999999999	5.80964	6.36631e-11	3.79275e-11	9.11778e-9	6.33012e-9
chr2	71046398	71046497	2728576	0	-	0.515152	(0.49,0.53]	chr2	243148	410	INTRON	INTRON	AC007040.8	ENSG00000236469.1	ENST00000434990.1	lncRNA	lncRNA	lncRNA	lncRNA	2	83	2	3.93377	5.24641	6.55905	3.06483e-6	4.57009e-9	1.13887e-4	3.94074e-7
chr14	100734993	100735091	14489611	0	+	0.397959	(0.39,0.42]	chr14	1132125	2	UTR3	UTR3:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	3	138	2	5.11564	5.2463750000000005	5.37711	9.85934e-9	6.1271e-12	8.41581e-7	1.12507e-9
chr3	184149794	184149886	3947923	0	+	0.434783	(0.42,0.455]	chr3	331911	2	EXON_PSEUDO	EXON_PSEUDO	RP11-778D9.4	ENSG00000228205.1	ENST00000433853.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	74	2	5.20268	5.2461	5.2895200000000004	3.59669e-5	3.1296e-9	8.71318e-4	2.83747e-7
chr12	130809204	130809299	13620076	0	-	0.252632	[0,0.29]	chr12	1072767	1	INTRON	INTRON	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7:ENST00000344271.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	5.07045	5.245675	5.4209	5.08054e-5	8.29716e-6	0.00114377	2.36305e-4
chr17	82718143	82718243	16385055	0	+	0.5	(0.49,0.53]	chr17	1332776	3	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	214	2	4.22706	5.245665	6.26427	8.03526e-10	1e-12	8.62572e-8	2.46312e-10
chr11	837459	837538	11759155	0	+	0.620253	(0.59,1]	chr11	898594	1	CDS	CDS:EXON_MRNA	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000529810.5:ENST00000526693.5:ENST00000532045.6:ENST00000527341.5:ENST00000530726.5:ENST00000528011.2:ENST00000530320.5:ENST00000532075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	102	2	3.96655	5.2453199999999995	6.52409	1.54087e-4	6.1879e-7	0.00279744	2.65084e-5
chr15	75760469	75760566	15380050	0	-	0.597938	(0.59,1]	chr15	1216166	11	EXON_LNCRNA	EXON_LNCRNA	RP11-24M17.6	ENSG00000261043.5	ENST00000561777.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	4.34487	5.2452000000000005	6.14553	0.0123678	5.79142e-6	0.0705839	1.75119e-4
chr4	41954099	41954199	4809487	0	+	0.42	(0.39,0.42]	chr4	396956	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	116	2	3.82587	5.24514	6.66441	3.30262e-8	2.81745e-10	2.16339e-6	3.77963e-8
chr10	97433260	97433352	11212398	0	+	0.445652	(0.42,0.455]	chr10	852981	9	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	5.18733	5.24453	5.30173	7.80521e-9	1.86517e-9	6.26576e-7	1.96611e-7
chr8	144097430	144097525	9650312	0	+	0.505263	(0.49,0.53]	chr8	731524	2	UTR3	UTR3:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	155	2	4.34398	5.2445	6.14502	1.20901e-7	1e-12	7.4077e-6	2.25522e-10
chr5	133959668	133959756	6843167	0	-	0.556818	(0.53,0.59]	chr5	523549	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	5.02047	5.244045	5.46762	1.97761e-5	4.49833e-8	5.29643e-4	2.80849e-6
chr7	103500833	103500922	8963255	0	-	0.47191	(0.455,0.49]	chr7	686111	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	5.24075	5.243995	5.24724	3.09759e-5	4.60487e-9	7.62166e-4	3.96681e-7
chr22	42623788	42623888	18524381	0	-	0.56	(0.53,0.59]	chr22	1581948	1	CDS	CDS:EXON_MRNA	CYB5R3	ENSG00000100243.21	ENST00000352397.10:ENST00000361740.8:ENST00000407623.7:ENST00000407332.5:ENST00000470741.1:ENST00000402438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.5586	5.24372	5.92884	0.00161229	1.11987e-6	0.0169168	4.4003e-5
chrX	123562776	123562871	18850562	0	+	0.589474	(0.53,0.59]	chrX	1606060	13	EXON_PSEUDO	EXON_PSEUDO	TUBB4AP1	ENSG00000228466.1	ENST00000450755.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	44	2	4.5586	5.24372	5.92884	0.00161229	1.11987e-6	0.0169168	4.4003e-5
chr3	14467852	14467904	3320649	0	+	0.5	(0.49,0.53]	chr3	292245	1	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	146	2	5.19545	5.24357	5.29169	3.21894e-9	4.07718e-11	2.90715e-7	6.71989e-9
chr11	34461250	34461319	11906236	0	+	0.536232	(0.53,0.59]	chr11	909814	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000530343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	4.24099	5.243505	6.24602	1.28258e-5	1.15746e-7	3.70041e-4	6.3314e-6
chr2	239988984	239989077	3245654	0	-	0.483871	(0.455,0.49]	chr2	286026	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.87633	5.24344	5.61055	2.95855e-4	3.16146e-6	0.00432147	1.16228e-4
chr4	16054736	16054836	5328608	0	-	0.52	(0.49,0.53]	chr4	428721	1	SS5_PROX	SS5_PROX:INTRON	PROM1	ENSG00000007062.12	ENST00000505450.5:ENST00000447510.7:ENST00000508167.5:ENST00000510224.5:ENST00000513946.2:ENST00000539194.6:ENST00000540805.6:ENST00000675613.1:ENST00000675377.1:ENST00000511153.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.12263	5.24344	6.36425	0.00591451	2.32873e-8	0.0427941	1.60638e-6
chrX	110171469	110171520	18820918	0	+	0.509804	(0.49,0.53]	chrX	1603931	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	3.62647	5.243005	6.85954	2.59929e-5	3.1478e-10	6.68294e-4	3.76745e-8
chr8	100704988	100705052	9975953	0	-	0.46875	(0.455,0.49]	chr8	752652	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	717	2	5.19947	5.242915	5.28636	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	63822612	63822710	12916672	0	+	0.418367	(0.39,0.42]	chr12	1006815	7	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	63	2	4.94836	5.242745	5.53713	3.48373e-6	5.60845e-8	1.26023e-4	3.39862e-6
chr11	43798373	43798427	11923896	0	+	0.333333	(0.33,0.36]	chr11	911160	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-472I20.4:HSD17B12	ENSG00000283341.2:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000637401.1:ENST00000638034.1:ENST00000527213.5:ENST00000532178.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	34	2	4.6856	5.241455	5.79731	3.92435e-4	8.38679e-7	0.00583618	3.43427e-5
chr19	40371806	40371873	17328670	0	+	0.58209	(0.53,0.59]	chr19	1435567	3	CDS	CDS:UTR3:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000492243.1:ENST00000475983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	95	2	4.42075	5.241435	6.06212	4.23179e-7	8.32123e-8	2.1371e-5	4.76997e-6
chr12	49185732	49185821	13324024	0	-	0.52809	(0.49,0.53]	chr12	1045766	8	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	282	2	4.38557	5.24137	6.09717	1.34741e-10	1e-12	1.95851e-8	2.25522e-10
chr20	59032251	59032345	18026293	0	-	0.659574	(0.59,1]	chr20	1527982	1	UTR5	UTR5:EXON_MRNA	ATP5F1E	ENSG00000124172.10	ENST00000243997.8:ENST00000395663.1:ENST00000395659.1	protein_coding	protein_coding	protein_coding	protein_coding	7	443	2	4.41022	5.2412600000000005	6.0723	1.48442e-9	2.26638e-10	1.4929e-7	3.11643e-8
chr10	87770951	87771041	11608043	0	-	0.444444	(0.42,0.455]	chr10	884035	1	CDS	CDS:UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.87922	5.240795	6.60237	1.04705e-4	2.80087e-9	0.0020295	2.57422e-7
chrX	120441811	120441894	19196179	0	-	0.433735	(0.42,0.455]	chrX	1631979	2	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	144	2	5.14793	5.240755	5.33358	7.88508e-9	1.13989e-11	6.93758e-7	1.94869e-9
chr6	75241133	75241233	7800202	0	-	0.36	(0.33,0.36]	chr6	597628	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6:ENST00000377978.3:ENST00000481061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	3.7554	5.24067	6.72594	1.62733e-5	3.40498e-10	4.52905e-4	4.0269e-8
chr9	35059621	35059711	10638091	0	-	0.477778	(0.455,0.49]	chr9	804509	3	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.89235	5.2405	6.58865	9.60445e-5	2.75015e-9	0.00190731	2.54234e-7
chr18	59329506	59329605	17142328	0	-	0.333333	(0.33,0.36]	chr18	1407602	18	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	4.70226	5.24025	5.77824	4.21411e-7	1.66566e-11	2.13696e-5	2.7509e-9
chr1	155188308	155188405	1306643	0	-	0.556701	(0.53,0.59]	chr1	131814	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MUC1	ENSG00000185499.16	ENST00000620103.4:ENST00000338684.9:ENST00000610359.4:ENST00000611571.4:ENST00000611577.4:ENST00000612778.4:ENST00000614519.4:ENST00000615517.4:ENST00000462317.5:ENST00000368392.7:ENST00000368393.7:ENST00000438413.5:ENST00000457295.6:ENST00000462215.5:ENST00000610468.4:ENST00000337604.6:ENST00000342482.8:ENST00000343256.9:ENST00000368389.6:ENST00000368390.7:ENST00000368396.8:ENST00000368398.7:ENST00000467134.5:ENST00000471283.5:ENST00000498431.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.95825	5.239965	5.52168	2.87508e-4	1.48967e-5	0.00457439	3.81697e-4
chr3	48601351	48601409	4168726	0	-	0.568965	(0.53,0.59]	chr3	349590	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000415995.5:ENST00000460105.1:ENST00000472438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.95825	5.239965	5.52168	2.87508e-4	1.48967e-5	0.00457439	3.81697e-4
chr6	39194168	39194252	7690403	0	-	0.559524	(0.53,0.59]	chr6	589675	1	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.95825	5.239965	5.52168	2.87508e-4	1.48967e-5	0.00457439	3.81697e-4
chrX	154484854	154484949	19278479	0	-	0.547368	(0.53,0.59]	chrX	1638451	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBL4A	ENSG00000102178.13	ENST00000369660.9:ENST00000421431.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.95825	5.239965	5.52168	2.87508e-4	1.48967e-5	0.00457439	3.81697e-4
chr11	126963358	126963458	12650920	0	-	0.33	(0.29,0.33]	chr11	982025	228	INTRON	INTRON	KIRREL3	ENSG00000149571.12	ENST00000525144.7:ENST00000529097.6:ENST00000525704.2:ENST00000533026.6:ENST00000547738.5:ENST00000549874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.0747	5.23993	6.40516	0.00577533	1.48063e-9	0.0417823	1.60907e-7
chr19	14564948	14564992	17243466	0	+	0.590909	(0.59,1]	chr19	1422056	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	131	2	3.9849	5.239755	6.49461	6.78787e-6	1.19255e-6	2.00658e-4	5.10538e-5
chr11	71438946	71439014	12444441	0	-	0.573529	(0.53,0.59]	chr11	966986	2	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1:ENST00000682880.1:ENST00000527316.5:ENST00000534701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	346	2	5.11522	5.23869	5.36216	7.0407e-12	1e-12	1.38606e-9	2.25522e-10
chr12	16991517	16991611	12756776	0	+	0.43617	(0.42,0.455]	chr12	991478	10	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P16	ENSG00000213235.3	ENST00000325349.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.80064	5.23775	5.67486	3.0479e-4	3.42598e-6	0.00472028	1.12506e-4
chr6	160073829	160073902	7528636	0	+	0.438356	(0.42,0.455]	chr6	574895	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000487607.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.80064	5.23775	5.67486	3.0479e-4	3.42598e-6	0.00472028	1.12506e-4
chr7	77794071	77794138	8867592	0	-	0.432836	(0.42,0.455]	chr7	678035	1	CDS	CDS:EXON_MRNA	TMEM60	ENSG00000135211.6	ENST00000257663.4	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.80064	5.23775	5.67486	3.0479e-4	3.42598e-6	0.00472028	1.12506e-4
chrX	48914482	48914571	19063614	0	-	0.617977	(0.59,1]	chrX	1620592	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000485431.1:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	5.13679	5.237395	5.338	9.28022e-4	3.196e-4	0.0111748	0.00457916
chr5	96786469	96786549	6721206	0	-	0.4125	(0.39,0.42]	chr5	517422	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000514604.5:ENST00000507859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.3313	5.2372499999999995	6.1432	0.00209984	9.87413e-8	0.0204266	5.5198e-6
chr7	20827410	20827496	8169903	0	+	0.534884	(0.53,0.59]	chr7	623035	2	EXON_PSEUDO	EXON_PSEUDO	RPL23P8	ENSG00000219451.3	ENST00000405810.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	221	2	4.80806	5.23719	5.66632	2.90361e-9	1e-12	2.89216e-7	2.25522e-10
chr2	62146772	62146867	1844802	0	+	0.473684	(0.455,0.49]	chr2	175130	6	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000458337.5:ENST00000444166.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	80	2	3.76882	5.237064999999999	6.70531	1.00626e-5	9.72532e-10	3.03291e-4	1.02291e-7
chr7	76066509	76066609	8342408	0	+	0.43	(0.42,0.455]	chr7	636262	2	UTR3	UTR3:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	5.11218	5.236075	5.35997	6.01815e-5	2.41298e-5	0.00130886	5.6648e-4
chr16	8893426	8893521	15844374	0	-	0.494737	(0.49,0.53]	chr16	1265410	15	UTR3	UTR3:EXON_MRNA	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.94363	5.236	5.52837	2.3417e-4	7.50805e-6	0.00355764	2.3779e-4
chr7	103522110	103522199	8963474	0	-	0.516854	(0.49,0.53]	chr7	686140	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.99034	5.23576	5.48118	1.6002e-4	1.24248e-5	0.00286408	3.28918e-4
chr19	49534259	49534327	17371107	0	+	0.691176	(0.59,1]	chr19	1443241	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000597801.1:ENST00000593644.1:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.2353	5.235365	6.23543	0.0165254	3.47367e-6	0.0873033	1.13687e-4
chr9	137804937	137805036	10517973	0	+	0.484848	(0.455,0.49]	chr9	797705	12	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	4.46858	5.235265	6.00195	2.38087e-6	1.86149e-7	8.3081e-5	1.07114e-5
chr8	11830331	11830420	9201982	0	+	0.47191	(0.455,0.49]	chr8	703051	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1:ENST00000529521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	236	2	5.02048	5.235125	5.44977	1.91946e-12	1e-12	4.36737e-10	2.25522e-10
chr6	151225847	151225947	8021989	0	-	0.53	(0.49,0.53]	chr6	613047	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP1-292B18.4:RP11-613F7.1	ENSG00000223598.1:ENSG00000213087.3	ENST00000415477.1:ENST00000440335.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	102	2	5.00714	5.23494	5.46274	1.13094e-5	3.25707e-10	3.3464e-4	3.88482e-8
chr3	193694896	193694993	3982883	0	+	0.360825	(0.36,0.39]	chr3	335206	4	UTR3	UTR3:EXON_MRNA	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000646544.1:ENST00000495261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.24194	5.23454	6.22714	0.00276729	3.88985e-8	0.0247437	2.48416e-6
chrX	49305403	49305463	18694351	0	+	0.533333	(0.53,0.59]	chrX	1594802	1	CDS	CDS:EXON_MRNA	GAGE10	ENSG00000215274.5	ENST00000407599.3	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	4.37211	5.23412	6.09613	5.43864e-6	3.47717e-7	1.81467e-4	1.62117e-5
chr19	46777210	46777307	17595481	0	-	0.56701	(0.53,0.59]	chr19	1481394	1	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	12	528	2	4.68464	5.234064999999999	5.78349	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	179649669	179649758	4606248	0	-	0.438202	(0.42,0.455]	chr3	380272	3	EXON_PSEUDO	EXON_PSEUDO	H3P13	ENSG00000243977.1	ENST00000496255.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	4.52594	5.2337299999999995	5.94152	0.00144145	2.47621e-7	0.0147046	1.36676e-5
chr7	100603958	100604044	8427966	0	+	0.651163	(0.59,1]	chr7	643248	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000496269.1:ENST00000462260.1:ENST00000482863.1:ENST00000487172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.63106	5.233715	5.83637	0.00537945	3.04631e-5	0.0406564	6.83179e-4
chr12	4686937	4687008	12707068	0	+	0.478873	(0.455,0.49]	chr12	985899	1	CDS	CDS:EXON_MRNA:INTRON	RP11-234B24.6:NDUFA9	ENSG00000255639.3:ENSG00000139180.11	ENST00000648836.1:ENST00000266544.10:ENST00000543979.1:ENST00000544741.2:ENST00000540688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	4.92203	5.233435	5.54484	4.89523e-6	7.22227e-8	1.67428e-4	4.22134e-6
chr1	113958065	113958140	418044	0	+	0.466667	(0.455,0.49]	chr1	41150	1	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	5.16215	5.233029999999999	5.30391	5.04348e-5	3.12735e-5	0.00113788	6.97306e-4
chr3	106903358	106903457	4338925	0	-	0.414141	(0.39,0.42]	chr3	361686	24	INTRON	INTRON	LINC00882	ENSG00000242759.8	ENST00000660862.1:ENST00000668760.1:ENST00000671682.1:ENST00000484698.5:ENST00000662455.1:ENST00000656342.1:ENST00000667805.1:ENST00000671604.1:ENST00000659129.1:ENST00000658929.1:ENST00000664169.1:ENST00000660353.1:ENST00000668928.1:ENST00000666429.1:ENST00000659859.1:ENST00000662123.1:ENST00000666687.1:ENST00000655451.1:ENST00000668963.1:ENST00000667931.1:ENST00000657806.1:ENST00000671678.1:ENST00000670214.1:ENST00000659605.1:ENST00000656555.1:ENST00000660515.1:ENST00000664426.1:ENST00000660263.1	lncRNA	lncRNA	lncRNA	lncRNA	2	87	2	3.3111	5.2324850000000005	7.15387	2.11919e-4	1.14057e-11	0.00357806	1.94869e-9
chr1	202333449	202333502	1450353	0	-	0.396226	(0.39,0.42]	chr1	145692	1	CDS	CDS:UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	5.00391	5.232275	5.46064	9.12714e-5	1.15573e-5	0.00182992	3.09736e-4
chr2	239915088	239915188	3244899	0	-	0.39	(0.36,0.39]	chr2	285963	17	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.83052	5.23203	5.63354	3.15227e-4	1.45096e-6	0.00452711	6.01084e-5
chr2	26279224	26279315	1686311	0	+	0.494505	(0.49,0.53]	chr2	164848	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	4.99034	5.232005	5.47367	1.6002e-4	6.0234e-10	0.00286408	6.67128e-8
chr12	49272835	49272932	12865716	0	+	0.515464	(0.49,0.53]	chr12	999063	7	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	258	2	5.12071	5.231920000000001	5.34313	3.96483e-12	1e-12	7.67623e-10	2.46312e-10
chr1	11059776	11059843	859134	0	-	0.671642	(0.59,1]	chr1	86787	1	CDS	CDS:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000376957.7:ENST00000459997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	133	2	3.64008	5.231885	6.82369	5.73108e-5	9.07221e-8	0.00127091	5.13369e-6
chr2	44996688	44996780	1772390	0	+	0.532609	(0.53,0.59]	chr2	171661	4	EXON_PSEUDO	EXON_PSEUDO	KRTCAP2P1	ENSG00000231848.1	ENST00000423051.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	5.19288	5.2318750000000005	5.27087	9.22873e-5	5.9416e-5	0.0016906	0.00130151
chr5	17353694	17353787	6473540	0	-	0.268817	[0,0.29]	chr5	503559	1	EXON_LNCRNA	EXON_LNCRNA	FTH1P10	ENSG00000223361.5	ENST00000401830.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	131	2	5.18779	5.2318750000000005	5.27596	8.31066e-9	1e-12	7.24186e-7	2.25522e-10
chr7	101216244	101216326	8953749	0	-	0.609756	(0.59,1]	chr7	684715	2	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000478082.5:ENST00000424135.5:ENST00000489927.1:ENST00000414785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	272	2	5.15616	5.231775	5.30739	4.07347e-8	3.13092e-9	2.58722e-6	3.0862e-7
chr22	21763044	21763143	18442381	0	-	0.444444	(0.42,0.455]	chr22	1572508	35	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	5	204	2	5.12205	5.2308900000000005	5.33973	5.75384e-12	3.606e-12	1.15894e-9	7.05988e-10
chr6	34767907	34767997	7125601	0	+	0.566667	(0.53,0.59]	chr6	548372	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	219	2	4.53341	5.230729999999999	5.92805	2.78343e-10	1.19205e-11	3.37536e-8	2.23707e-9
chr2	239916188	239916288	3244910	0	-	0.4	(0.39,0.42]	chr2	285963	28	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	3.93975	5.23063	6.52151	0.0105893	1.12544e-9	0.0644466	1.26999e-7
chr6	26234646	26234739	7647249	0	-	0.516129	(0.49,0.53]	chr6	582563	4	CDS	CDS:EXON_MRNA	H1-3	ENSG00000124575.7	ENST00000244534.7	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	3.62965	5.230535	6.83142	7.11626e-7	2.582e-10	2.99017e-5	3.48617e-8
chr20	34585436	34585508	17947269	0	-	0.416667	(0.39,0.42]	chr20	1520049	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	5.07852	5.22942	5.38032	1.02164e-4	9.82886e-6	0.00183311	2.98194e-4
chr6	52404777	52404877	7177658	0	+	0.41	(0.39,0.42]	chr6	555100	6	UTR3	UTR3:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	5.07852	5.22942	5.38032	1.02164e-4	9.82886e-6	0.00183311	2.98194e-4
chr6	32117586	32117640	7664418	0	-	0.592593	(0.59,1]	chr6	585990	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	100	2	4.37589	5.229105000000001	6.08232	1.83082e-5	8.23309e-6	4.99708e-4	2.34786e-4
chr1	156134929	156134975	486119	0	+	0.478261	(0.455,0.49]	chr1	51277	1	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6:ENST00000515824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.50805	5.228735	5.94942	0.00122223	4.68666e-7	0.0135383	2.08717e-5
chr4	108620568	108620640	5038284	0	+	0.430556	(0.42,0.455]	chr4	409820	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	1087	2	5.10891	5.228605	5.3483	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	2071723	2071821	17421607	0	-	0.540816	(0.53,0.59]	chr19	1453173	8	UTR3	UTR3:EXON_MRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	5.11707	5.228275	5.33948	1.35965e-4	4.08763e-5	0.00231202	9.64741e-4
chr3	195785440	195785540	4661121	0	-	0.59	(0.53,0.59]	chr3	385270	68	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	5.11707	5.228275	5.33948	1.35965e-4	4.08763e-5	0.00231202	9.64741e-4
chr3	127620788	127620880	3723603	0	+	0.543478	(0.53,0.59]	chr3	318295	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000468414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	5.12301	5.228260000000001	5.33351	1.2852e-4	4.35359e-5	0.00241206	0.00091744700000000005
chr11	125584320	125584411	12194217	0	+	0.406593	(0.39,0.42]	chr11	940681	8	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000278903.11	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	4.69349	5.227964999999999	5.76244	1.61725e-6	3.85767e-7	5.98677e-5	1.98905e-5
chr2	219217738	219217807	3191249	0	-	0.594203	(0.59,1]	chr2	280841	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	104	2	4.76848	5.227925	5.68737	8.79466e-5	1.47805e-6	0.00178337	5.56634e-5
chr1	1041172	1041247	2261	0	+	0.733333	(0.59,1]	chr1	479	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.86977	5.22788	5.58599	0.00246014	1.04372e-4	0.0230058	0.00186841
chr5	138951252	138951335	6862782	0	-	0.650602	(0.59,1]	chr5	525295	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000515008.1:ENST00000509534.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.86977	5.22788	5.58599	0.00246014	1.04372e-4	0.0230058	0.00186841
chr11	119054178	119054236	12626535	0	-	0.482759	(0.455,0.49]	chr11	979811	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	4.97525	5.227515	5.47978	1.38474e-4	5.02175e-10	0.00254294	5.70312e-8
chr5	43295834	43295917	6560223	0	-	0.325301	(0.29,0.33]	chr5	508359	2	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000514610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	102	2	4.638	5.22703	5.81606	1.208e-8	9.39027e-12	9.99282e-7	1.63887e-9
chr16	32871001	32871063	15639078	0	+	0.532258	(0.53,0.59]	chr16	1242420	1	EXON_PSEUDO	EXON_PSEUDO	BCAP31P2	ENSG00000260047.2	ENST00000563143.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	45	2	4.43863	5.22677	6.01491	0.00254763	6.18274e-7	0.0233955	2.65059e-5
chr17	79397909	79398009	16701577	0	-	0.59	(0.53,0.59]	chr17	1376424	897	INTRON	INTRON	RBFOX3	ENSG00000167281.19	ENST00000583458.5:ENST00000580155.5:ENST00000584778.5:ENST00000578887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.43863	5.22677	6.01491	0.00254763	6.18274e-7	0.0233955	2.65059e-5
chr3	143043476	143043576	3793496	0	+	0.32	(0.29,0.33]	chr3	323953	2	SS5_PROX	SS5_PROX:INTRON	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	5.03124	5.226660000000001	5.42208	9.06368e-5	5.31413e-6	0.00167558	1.7831e-4
chr1	224190133	224190226	728458	0	+	0.408602	(0.39,0.42]	chr1	73579	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000498813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	5.07258	5.22645	5.38032	9.82886e-6	1.94725e-8	2.98194e-4	1.37715e-6
chr16	56844674	56844772	15680586	0	+	0.306122	(0.29,0.33]	chr16	1246714	1	UTR3	UTR3:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5:ENST00000569322.1:ENST00000564278.1:ENST00000563465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	4.45698	5.22638	5.99578	6.4242e-8	4.13523e-8	4.22894e-6	2.61265e-6
chrX	154400854	154400917	18917617	0	+	0.47619	(0.455,0.49]	chrX	1611825	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	118	2	4.53876	5.22638	5.914	1.31171e-6	6.59606e-12	5.53834e-5	1.20232e-9
chr3	14141695	14141795	3319493	0	+	0.62	(0.59,1]	chr3	292108	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3:ENST00000626721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	99	2	4.49996	5.226315	5.95267	2.38682e-5	7.55563e-6	6.18922e-4	2.18445e-4
chrX	153982357	153982455	18916472	0	+	0.693878	(0.59,1]	chrX	1611536	3	CDS	CDS:EXON_MRNA	TMEM187	ENSG00000177854.8	ENST00000369982.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.57037	5.226039999999999	5.88171	0.0054994	3.41939e-5	0.0402071	8.3505e-4
chr3	41225659	41225726	3432474	0	+	0.358209	(0.33,0.36]	chr3	298540	1	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	5.19876	5.22592	5.25308	2.94355e-5	2.37278e-5	6.67979e-4	6.1689e-4
chrX	154348948	154349036	19277950	0	-	0.636364	(0.59,1]	chrX	1638237	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000498491.5:ENST00000462590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.03834	5.225795	5.41325	0.00108238	3.01546e-4	0.0118355	0.00472028
chr11	46802514	46802613	12384115	0	-	0.484848	(0.455,0.49]	chr11	956183	3	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	4.67428	5.22579	5.7773	4.63488e-7	2.68753e-11	2.31256e-5	4.20839e-9
chr9	34918202	34918296	10241924	0	+	0.489362	(0.455,0.49]	chr9	770214	12	EXON_PSEUDO	EXON_PSEUDO	GLULP4	ENSG00000178723.7	ENST00000324731.7	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.76048	5.225765	5.69105	3.99985e-4	2.83777e-6	0.00588767	9.62519e-5
chrX	66200586	66200686	18717629	0	+	0.59	(0.53,0.59]	chrX	1597010	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	129	2	4.83308	5.22569	5.6183	1.94849e-7	2.43197e-10	1.11133e-5	2.99496e-8
chr11	82850414	82850505	12499360	0	-	0.406593	(0.39,0.42]	chr11	971454	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5:ENST00000533126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.14886	5.22519	6.30152	0.00415881	2.78542e-8	0.0325842	1.87494e-6
chr2	128173859	128173939	2060335	0	+	0.5125	(0.49,0.53]	chr2	193330	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.67972	5.22518	5.77064	6.94757e-4	1.94063e-6	0.00876781	6.9799e-5
chr1	150966552	150966629	1291372	0	-	0.480519	(0.455,0.49]	chr1	128676	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	278	2	4.1112	5.224455000000001	6.33771	1.84809e-9	1e-12	1.95155e-7	2.25522e-10
chr7	155302829	155302846	8632597	0	+	0.470588	(0.455,0.49]	chr7	659276	1	CDS	CDS:UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1:ENST00000468307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.0204	5.22428	6.42816	0.00736097	1.09292e-8	0.0490627	8.34724e-7
chr19	49154944	49155040	17605454	0	-	0.489583	(0.455,0.49]	chr19	1483739	17	CDS	CDS:EXON_MRNA	HRC	ENSG00000130528.12	ENST00000252825.9:ENST00000595625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.36307	5.223935	6.0848	0.00218641	1.71103e-7	0.0208941	8.87341e-6
chr1	150512724	150512812	468355	0	+	0.545455	(0.53,0.59]	chr1	47410	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.86823	5.22377	5.57931	4.35895e-4	1.05602e-5	0.00623608	2.89015e-4
chr17	64749748	64749835	16641050	0	-	0.344828	(0.33,0.36]	chr17	1368652	2	EXON_LNCRNA	EXON_LNCRNA	ARHGAP27P1-BPTFP1-KPNA2P3	ENSG00000215769.8	ENST00000578492.5	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.96487	5.223365	5.48186	9.26851e-5	7.22374e-6	0.00185187	2.11873e-4
chr6	116453013	116453105	7908913	0	-	0.347826	(0.33,0.36]	chr6	605662	1	EXON_PSEUDO	EXON_PSEUDO	CBX3P9	ENSG00000217241.1	ENST00000402326.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.96487	5.223365	5.48186	9.26851e-5	7.22374e-6	0.00185187	2.11873e-4
chr17	81004932	81005032	16378270	0	+	0.46	(0.455,0.49]	chr17	1331304	17	EXON_MRNA	EXON_MRNA:INTRON	CHMP6:CTD-2561B21.8	ENSG00000176108.9:ENSG00000280351.2	ENST00000571457.1:ENST00000625110.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	36	2	4.77318	5.223285000000001	5.67339	4.7888e-4	2.05982e-6	0.00628636	8.10246e-5
chr1	25290640	25290715	103645	0	+	0.546667	(0.53,0.59]	chr1	12138	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	4.23022	5.22312	6.21602	1.38676e-5	1.37682e-7	3.5918e-4	8.24248e-6
chr12	118138093	118138148	13108867	0	+	0.563636	(0.53,0.59]	chr12	1023106	2	CDS	CDS:EXON_MRNA	PEBP1	ENSG00000089220.5	ENST00000261313.3	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	4.09676	5.222894999999999	6.34903	3.14727e-5	5.2841e-8	7.72298e-4	3.2354e-6
chr20	45906267	45906359	17987716	0	-	0.543478	(0.53,0.59]	chr20	1524209	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	4.09676	5.222894999999999	6.34903	3.14727e-5	5.2841e-8	7.72298e-4	3.2354e-6
chr12	120210536	120210635	13579785	0	-	0.454545	(0.42,0.455]	chr12	1068824	2	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	5.01562	5.222155	5.42869	1.01971e-4	1.60756e-5	0.0019861	4.07445e-4
chr17	76775083	76775171	16359765	0	+	0.420455	(0.42,0.455]	chr17	1328698	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MFSD11	ENSG00000092931.11	ENST00000586622.5:ENST00000588460.5:ENST00000621483.4:ENST00000355954.7:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000585958.5:ENST00000585692.5:ENST00000585865.1:ENST00000588647.1:ENST00000590070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	5.01562	5.222155	5.42869	1.01971e-4	1.60756e-5	0.0019861	4.07445e-4
chr12	113388819	113388916	13101742	0	+	0.556701	(0.53,0.59]	chr12	1022448	3	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	4.59982	5.22157	5.84332	1.90853e-6	1.85529e-8	7.59317e-5	1.32775e-6
chr12	7827588	7827682	13192489	0	-	0.510638	(0.49,0.53]	chr12	1033400	2	CDS	CDS:EXON_MRNA:INTRON	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	4	183	2	5.16209	5.221275	5.28046	5.74544e-11	2.1163e-11	9.08453e-9	3.40876e-9
chr11	1753602	1753670	12230421	0	-	0.691176	(0.59,1]	chr11	944377	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636579.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000497544.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	285	2	4.97207	5.221245	5.47042	5.21616e-7	1.78587e-10	2.56719e-5	2.26897e-8
chr6	31506334	31506430	7115384	0	+	0.53125	(0.53,0.59]	chr6	545667	3	CDS	CDS:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7:ENST00000494577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.5586	5.2212	5.8838	0.00161229	1.51824e-6	0.0169168	5.67784e-5
chr1	161356758	161356840	500047	0	+	0.512195	(0.49,0.53]	chr1	54175	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	3.96227	5.221065	6.47986	2.55585e-6	6.13551e-9	8.83735e-5	5.54301e-7
chr11	32933039	32933139	11899057	0	+	0.44	(0.42,0.455]	chr11	909001	14	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	4.60896	5.2206600000000005	5.83236	8.72604e-7	5.6476e-7	3.55816e-5	2.73442e-5
chr7	103496687	103496768	8963210	0	-	0.395062	(0.39,0.42]	chr7	686095	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.66467	5.220495	6.77632	3.60066e-4	4.40326e-10	0.00544157	5.06835e-8
chrX	142203333	142203426	19261781	0	-	0.516129	(0.49,0.53]	chrX	1636101	5	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.11868	5.220235000000001	5.32179	9.66505e-5	2.63311e-5	0.00175267	6.73425e-4
chr11	61316284	61316338	12404065	0	-	0.5	(0.49,0.53]	chr11	960225	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000538280.1:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	5.16557	5.2201699999999995	5.27477	6.36135e-5	4.14521e-5	0.00136069	8.8376e-4
chr3	184244660	184244721	4622946	0	-	0.52459	(0.49,0.53]	chr3	381730	2	CDS	CDS:UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000462735.6:ENST00000423996.5:ENST00000477959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	5.16557	5.2201699999999995	5.27477	6.36135e-5	4.14521e-5	0.00136069	8.8376e-4
chr4	110051437	110051518	5595067	0	-	0.493827	(0.49,0.53]	chr4	446475	1	CDS	CDS:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	5.16557	5.2201699999999995	5.27477	6.36135e-5	4.14521e-5	0.00136069	8.8376e-4
chr11	57672409	57672506	11951846	0	+	0.484536	(0.455,0.49]	chr11	914646	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8:ENST00000524540.1:ENST00000527090.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.63978	5.219895	5.80001	6.94032e-4	1.35407e-6	0.00876781	5.16241e-5
chr3	13360269	13360343	4046656	0	-	0.554054	(0.53,0.59]	chr3	339648	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	3.8188	5.21947	6.62014	1.54941e-4	6.02789e-9	0.0028049	5.00481e-7
chr9	33624736	33624829	10236156	0	+	0.516129	(0.49,0.53]	chr9	769679	6	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.89405	5.218975	5.5439	2.57983e-4	8.44877e-6	0.00419998	2.39255e-4
chr12	57695779	57695843	12904081	0	+	0.453125	(0.42,0.455]	chr12	1005862	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000550848.5:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000551285.5:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000550793.1:ENST00000552423.1:ENST00000549307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	95	2	4.92093	5.21884	5.51675	5.14372e-6	7.14218e-10	1.73456e-4	7.76254e-8
chr1	153990761	153990796	479577	0	+	0.628571	(0.59,1]	chr1	49564	1	UTR5	UTR5:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000392558.4:ENST00000643794.1:ENST00000493224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	2266	2	4.46917	5.218640000000001	5.96811	5.30725e-11	1e-12	8.48807e-9	2.25522e-10
chr11	125595915	125596003	12194272	0	+	0.386364	(0.36,0.39]	chr11	940710	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	4.47217	5.2183399999999995	5.96451	2.19864e-6	1.13061e-7	7.75596e-5	6.97642e-6
chr12	104265209	104265308	13058272	0	+	0.515152	(0.49,0.53]	chr12	1017572	68	INTRON	INTRON	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	767	2	5.04389	5.2176	5.39131	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	44230567	44230665	7161488	0	+	0.530612	(0.53,0.59]	chr6	553791	1	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000371731.6:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	284	2	4.69339	5.217455	5.74152	8.05453e-9	1e-12	7.06583e-7	2.25522e-10
chr1	156308967	156309044	1314019	0	-	0.324675	(0.29,0.33]	chr1	133399	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	4.57812	5.215945	5.85377	9.55291e-7	2.10378e-7	3.84721e-5	1.18923e-5
chr7	44796679	44796724	8261606	0	+	0.555556	(0.53,0.59]	chr7	629454	1	UTR5	UTR5:EXON_MRNA	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	252	2	3.80041	5.21573	6.63105	5.54193e-8	1e-12	3.70656e-6	2.25522e-10
chr21	33584678	33584768	18221023	0	-	0.522222	(0.49,0.53]	chr21	1546501	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DONSON:AP000304.12	ENSG00000159147.18:ENSG00000249209.2	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000444517.5:ENST00000442660.5:ENST00000437395.5:ENST00000432378.5:ENST00000440810.1:ENST00000429238.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.55929	5.2156	5.87191	0.00116196	9.67449e-7	0.0130851	3.88631e-5
chr14	61240758	61240858	14328957	0	+	0.43	(0.42,0.455]	chr14	1119981	527	INTRON	INTRON	PRKCH	ENSG00000027075.16	ENST00000555185.5:ENST00000556778.5:ENST00000557294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.71365	5.215175	6.7167	2.63375e-4	1.01691e-9	0.00427022	1.0635e-7
chr11	61803031	61803111	12405935	0	-	0.5125	(0.49,0.53]	chr11	960589	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5:ENST00000496123.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	168	2	4.44077	5.21503	5.98929	3.2371e-9	3.63609e-12	3.18335e-7	7.10284e-10
chr3	196064368	196064428	4663300	0	-	0.55	(0.53,0.59]	chr3	385597	2	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	319	2	4.99119	5.21465	5.43811	7.221e-12	1e-12	1.30195e-9	2.46312e-10
chr1	227749805	227749904	742608	0	+	0.333333	(0.33,0.36]	chr1	74945	1	INTRON	INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000606873.1:ENST00000491439.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.52266	5.2145399999999995	5.90642	8.34989e-4	3.75343e-7	0.0102956	1.72944e-5
chr6	44233878	44233966	7161529	0	+	0.545455	(0.53,0.59]	chr6	553816	5	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding	10	436	2	4.89461	5.214370000000001	5.53413	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	12110122	12110204	46526	0	+	0.609756	(0.59,1]	chr1	6018	2	CDS	CDS:UTR3:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.63106	5.2143	5.79754	0.00537945	3.712e-5	0.0406564	8.06532e-4
chr19	49537118	49537205	17371137	0	+	0.609195	(0.59,1]	chr19	1443247	2	CDS	CDS:EXON_MRNA	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000597801.1:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.63106	5.2143	5.79754	0.00537945	3.712e-5	0.0406564	8.06532e-4
chrX	154400754	154400854	18917616	0	+	0.6	(0.59,1]	chrX	1611824	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	786	2	5.1935	5.21419	5.23488	4.12571e-11	1.68354e-12	6.79078e-9	3.59021e-10
chr17	82765395	82765488	16385498	0	+	0.526882	(0.49,0.53]	chr17	1332894	10	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	5.08061	5.213755	5.3469	1.00361e-4	2.75121e-5	0.00196575	6.30607e-4
chr1	225789821	225789913	737931	0	+	0.315217	(0.29,0.33]	chr1	74393	6	UTR3	UTR3:EXON_MRNA	SRP9	ENSG00000143742.14	ENST00000304786.12:ENST00000366839.8:ENST00000651761.1	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	4.97633	5.213065	5.4498	4.72785e-8	1.60005e-12	3.25056e-6	3.42262e-10
chr11	5243179	5243253	12240525	0	-	0.527027	(0.49,0.53]	chr11	946051	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_PROX:INTRON	HBD:HBBP1	ENSG00000223609.11:ENSG00000229988.2	ENST00000643122.1:ENST00000454892.2:ENST00000433329.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	4	170	2	4.85183	5.213065	5.5743	1.8717e-10	6.55336e-11	2.63088e-8	9.33966e-9
chr3	128622245	128622327	4441325	0	-	0.536585	(0.53,0.59]	chr3	368991	2	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	5.02047	5.21272	5.40497	2.83308e-5	4.49833e-8	7.12614e-4	2.80849e-6
chr10	124413250	124413341	11729424	0	-	0.351648	(0.33,0.36]	chr10	895099	7	INTRON	INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.6856	5.21255	5.7395	3.92435e-4	1.26833e-6	0.00583618	4.89488e-5
chr7	98881649	98881729	8419054	0	+	0.3875	(0.36,0.39]	chr7	641079	1	EXON_SMALL	EXON_SMALL:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	TRRAP:MIR3609	ENSG00000196367.14:ENSG00000266019.1	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000582661.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:primary_miRNA	3	113	2	4.52928	5.2122150000000005	5.89515	2.30649e-8	2.7337e-12	1.5982e-6	5.98291e-10
chr7	92607797	92607896	8924917	0	-	0.282828	[0,0.29]	chr7	681136	30	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.1764	5.2120049999999996	6.24761	1.69626e-5	6.46611e-9	4.28575e-4	5.81903e-7
chr16	2519645	2519745	15493410	0	+	0.58	(0.53,0.59]	chr16	1227536	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	7	317	2	4.94919	5.211205	5.47322	4.83291e-12	1e-12	9.93568e-10	2.25522e-10
chr2	146588645	146588740	2114226	0	+	0.505263	(0.49,0.53]	chr2	196730	13	EXON_PSEUDO	EXON_PSEUDO	PABPC1P2	ENSG00000198526.7	ENST00000471997.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	44	2	4.28332	5.21115	6.13898	0.00338762	1.37435e-7	0.0288632	7.34618e-6
chr6	49611084	49611145	7729658	0	-	0.459016	(0.455,0.49]	chr6	592950	2	CDS	CDS:EXON_MRNA:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	23	891	2	4.41269	5.211029999999999	6.00937	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	43409278	43409376	14895829	0	+	0.469388	(0.455,0.49]	chr15	1171084	28	UTR3	UTR3:EXON_MRNA	TUBGCP4	ENSG00000137822.13	ENST00000564079.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.87633	5.210585	5.54484	2.95855e-4	4.89523e-6	0.00432147	1.67428e-4
chr5	37350159	37350212	6540563	0	-	0.415094	(0.39,0.42]	chr5	506658	1	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1:ENST00000507233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.77106	5.21012	5.64918	3.03764e-4	3.47137e-6	0.00472028	1.13687e-4
chr19	46946728	46946825	17359024	0	+	0.484536	(0.455,0.49]	chr19	1440793	3	EXON_MRNA	EXON_MRNA:INTRON	ARHGAP35:CTD-2233K9.1	ENSG00000160007.19:ENSG00000279948.1	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1:ENST00000624074.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:TEC	0	35	2	4.97525	5.2100349999999995	5.44482	1.38474e-4	1.36044e-5	0.00254294	3.54469e-4
chrX	26749289	26749389	18623795	0	+	0.4	(0.39,0.42]	chrX	1590348	3	INTRON	INTRON	VENTXP1	ENSG00000259849.2	ENST00000674719.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	34	2	4.89218	5.20922	5.52626	1.6518e-4	7.67816e-6	0.0029267300000000002	2.20857e-4
chrX	108084781	108084877	19163718	0	-	0.395833	(0.39,0.42]	chrX	1629964	7	UTR3	UTR3:EXON_MRNA	PSMD10	ENSG00000101843.19	ENST00000217958.8:ENST00000372296.5:ENST00000372295.5:ENST00000361815.9:ENST00000340200.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.89218	5.20922	5.52626	1.6518e-4	7.67816e-6	0.0029267300000000002	2.20857e-4
chr12	7831603	7831683	13192533	0	-	0.525	(0.49,0.53]	chr12	1033418	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5:ENST00000546234.5:ENST00000542782.5:ENST00000535344.5:ENST00000537557.5:ENST00000535266.5:ENST00000539738.1:ENST00000542916.5:ENST00000536594.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.40667	5.2091449999999995	6.01162	3.62526e-6	3.55916e-7	1.29307e-4	1.64926e-5
chr11	6614149	6614248	12249917	0	-	0.434343	(0.42,0.455]	chr11	946834	15	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	4	156	2	4.42143	5.20901	5.99659	3.26801e-9	3.08076e-12	3.21223e-7	6.1559e-10
chr5	98856279	98856379	6725378	0	-	0.32	(0.29,0.33]	chr5	517718	24	UTR3	UTR3:EXON_MRNA	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000512392.5:ENST00000512844.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	4.35615	5.20901	6.06187	1.00858e-7	3.62101e-8	5.6272e-6	2.57694e-6
chr17	59683874	59683929	16295489	0	+	0.418182	(0.39,0.42]	chr17	1321746	1	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000496076.1:ENST00000472651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	4.73936	5.208959999999999	5.67856	1.29189e-6	3.05649e-7	5.48279e-5	1.45677e-5
chr11	309065	309165	11756405	0	+	0.55	(0.53,0.59]	chr11	897738	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	IFITM2:RP11-326C3.17	ENSG00000185201.17:ENSG00000288681.1	ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000680619.1:ENST00000602569.2:ENST00000527146.1:ENST00000399815.2:ENST00000680099.1:ENST00000679636.1:ENST00000679383.1:ENST00000680585.1:ENST00000681211.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	160	2	4.70141	5.2077	5.71399	7.68795e-9	9.49644e-11	6.19157e-7	1.43631e-8
chr17	15465561	15465661	16456272	0	-	0.45	(0.42,0.455]	chr17	1343279	121	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	5.0468	5.207520000000001	5.36824	1.33918e-4	1.33083e-5	0.00229039	3.81624e-4
chr16	20764013	20764069	15582663	0	+	0.482143	(0.455,0.49]	chr16	1234726	1	UTR5	UTR5:EXON_MRNA:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000561584.5:ENST00000564701.1:ENST00000289416.10:ENST00000440284.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.0204	5.207105	6.39381	0.00736097	1.45725e-8	0.0490627	1.07259e-6
chr15	71341527	71341619	15364361	0	-	0.434783	(0.42,0.455]	chr15	1213733	5	EXON_PSEUDO	EXON_PSEUDO	RP11-592N21.1	ENSG00000212664.5	ENST00000498103.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	63	2	4.82853	5.207084999999999	5.58564	3.24669e-6	1.59873e-7	1.18495e-4	8.38121e-6
chr13	46777434	46777534	14012276	0	-	0.4	(0.39,0.42]	chr13	1098845	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.45983	5.206795	6.95376	8.68166e-5	8.21028e-11	0.00177086	1.14209e-8
chr12	49127869	49127957	13323967	0	-	0.443182	(0.42,0.455]	chr12	1045744	2	UTR3	UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	662	2	5.16841	5.2055299999999995	5.24265	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	72273231	72273310	19107964	0	-	0.43038	(0.42,0.455]	chrX	1625635	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS4X	ENSG00000198034.11	ENST00000470671.1:ENST00000316084.10:ENST00000486733.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	847	2	5.05587	5.2055	5.35513	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	230990109	230990186	751338	0	+	0.428571	(0.42,0.455]	chr1	76365	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.67981	5.205085	5.73036	5.38444e-4	2.37045e-6	0.00744072	8.28831e-5
chr1	95193154	95193253	362118	0	+	0.292929	(0.29,0.33]	chr1	35683	14	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	4	107	2	4.63272	5.204935	5.77715	3.88822e-7	3.70773e-11	1.99593e-5	5.63643e-9
chr9	5127974	5128073	10167896	0	+	0.313131	(0.29,0.33]	chr9	765751	13	UTR3	UTR3:EXON_MRNA	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	4.28479	5.204925	6.12506	1.86411e-7	2.06649e-8	9.59082e-6	1.58157e-6
chr5	56504984	56505072	6587867	0	-	0.431818	(0.42,0.455]	chr5	510045	5	EXON_PSEUDO	EXON_PSEUDO	RPL26P19	ENSG00000226221.1	ENST00000450941.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	84	2	4.57733	5.204845000000001	5.83236	5.6476e-7	1.70896e-8	2.73442e-5	1.23244e-6
chr20	31549269	31549332	17748603	0	+	0.539683	(0.53,0.59]	chr20	1497864	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000464661.5:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000464173.5:ENST00000472128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.6522	5.204785	6.75737	2.31822e-5	1.77309e-9	5.49766e-4	1.87805e-7
chr1	46286208	46286305	981897	0	-	0.618557	(0.59,1]	chr1	103530	2	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.86977	5.20473	5.53969	0.00246014	1.29608e-4	0.0230058	0.00223885
chr16	73941411	73941503	16026553	0	-	0.48913	(0.455,0.49]	chr16	1286935	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPSAP56	ENSG00000284670.1	ENST00000641751.1:ENST00000641699.1	translated_processed_pseudogene	processed_transcript	translated_processed_pseudogene	processed_transcript:translated_processed_pseudogene	2	93	2	3.17056	5.2043	7.23804	4.1243e-4	5.82945e-12	0.00604953	1.07608e-9
chr7	128748683	128748743	8521636	0	+	0.416667	(0.39,0.42]	chr7	650163	1	CDS	CDS:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	4.42682	5.204035	5.98125	1.28715e-7	5.99745e-8	7.78377e-6	3.60573e-6
chr1	160998870	160998906	1331427	0	-	0.472222	(0.455,0.49]	chr1	136427	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	5.16057	5.203905	5.24724	3.09759e-5	9.41019e-9	7.62166e-4	7.37763e-7
chr3	128067982	128068059	3725169	0	+	0.558442	(0.53,0.59]	chr3	318507	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1:ENST00000498837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	4.66193	5.203755	5.74558	3.61407e-6	7.20737e-7	1.29307e-4	3.019e-5
chr8	18056472	18056569	9732795	0	-	0.381443	(0.36,0.39]	chr8	736286	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.99	5.203685	6.41737	6.1616e-5	7.87465e-9	0.00133408	6.30554e-7
chr5	151267295	151267351	6297983	0	+	0.589286	(0.53,0.59]	chr5	491680	1	CDS	CDS:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000357164.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.77222	5.20348	5.63474	6.67251e-4	7.53339e-6	0.00867533	2.17987e-4
chr8	47157303	47157397	9311230	0	+	0.531915	(0.53,0.59]	chr8	713302	3	EXON_PSEUDO	EXON_PSEUDO	RPL10AP2	ENSG00000188873.4	ENST00000479243.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	40	2	4.77222	5.20348	5.63474	6.67251e-4	7.53339e-6	0.00867533	2.17987e-4
chr3	38141382	38141478	3419190	0	+	0.5	(0.49,0.53]	chr3	297125	2	UTR3	UTR3:EXON_MRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000484513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.94363	5.2031849999999995	5.46274	2.3417e-4	1.13094e-5	0.00355764	3.3464e-4
chr3	133819609	133819666	3752505	0	+	0.526316	(0.49,0.53]	chr3	321406	2	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.99034	5.2029700000000005	5.4156	1.6002e-4	1.84143e-5	0.00286408	4.53637e-4
chr11	61803362	61803459	12405939	0	-	0.494845	(0.49,0.53]	chr11	960593	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	351	2	4.67433	5.202785	5.73124	3.518e-11	1e-12	5.9403e-9	2.25522e-10
chrX	148052489	148052574	18896964	0	+	0.470588	(0.455,0.49]	chrX	1609379	4	EXON_PSEUDO	EXON_PSEUDO	FTH1P8	ENSG00000219507.4	ENST00000498161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	41	2	4.36307	5.20207	6.04107	0.00218641	2.38066e-7	0.0208941	1.17461e-5
chr19	14564234	14564287	17243457	0	+	0.528302	(0.49,0.53]	chr19	1422049	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	172	2	4.96025	5.201135000000001	5.44202	6.71743e-10	2.14744e-11	8.07767e-8	3.45096e-9
chr1	38709224	38709322	144541	0	+	0.479592	(0.455,0.49]	chr1	18021	4	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	53	2	3.81275	5.2007	6.58865	0.0138827	2.75015e-9	0.0760883	2.54234e-7
chr17	48051300	48051382	16253276	0	+	0.560976	(0.53,0.59]	chr17	1317094	2	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000584137.5:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000585062.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	4.76025	5.20049	5.64073	7.00135e-6	3.4642e-7	2.25852e-4	1.61837e-5
chr11	78112608	78112708	12477842	0	-	0.43	(0.42,0.455]	chr11	970731	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	5.11218	5.2	5.28782	6.01815e-5	3.65299e-5	0.00130886	7.95843e-4
chr3	186900377	186900467	3958574	0	+	0.422222	(0.42,0.455]	chr3	333918	3	EXON_PSEUDO	EXON_PSEUDO	RPS20P14	ENSG00000223803.1	ENST00000412545.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	34	2	5.11218	5.2	5.28782	6.01815e-5	3.65299e-5	0.00130886	7.95843e-4
chr8	27523008	27523105	9243382	0	+	0.525773	(0.49,0.53]	chr8	708020	1	INTRON	INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	81	2	3.33324	5.19961	7.06598	0.00162947	4.48874e-11	0.0169972	6.67252e-9
chr19	48904346	48904400	17367658	0	+	0.574074	(0.53,0.59]	chr19	1442112	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	89	2	3.92332	5.199585	6.47585	3.68546e-6	1.951e-8	1.31185e-4	1.37715e-6
chr12	55726940	55726964	13347088	0	-	0.375	(0.36,0.39]	chr12	1050345	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5:ENST00000546457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	93	2	3.27731	5.199425	7.12154	1.04905e-5	1.31772e-12	2.87912e-4	3.14916e-10
chr2	22449337	22449437	1672585	0	+	0.25	[0,0.29]	chr2	163783	200	INTRON	INTRON	LINC01830	ENSG00000234207.1	ENST00000419013.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.75921	5.198840000000001	5.63847	2.77035e-4	1.9181e-6	0.00444204	6.93031e-5
chr4	7774180	7774279	4712700	0	+	0.525253	(0.49,0.53]	chr4	390956	21	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.67972	5.198465	5.71721	6.94757e-4	2.77472e-6	0.00876781	9.47025e-5
chr4	32156874	32156970	4782287	0	+	0.28125	[0,0.29]	chr4	394823	11	INTRON	INTRON	LINC02506	ENSG00000251129.2	ENST00000660373.1:ENST00000665582.1:ENST00000655951.1:ENST00000667252.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.85267	5.198115	5.54356	2.14908e-4	2.29995e-6	0.00332687	8.86852e-5
chr19	49430715	49430812	17606400	0	-	0.546392	(0.53,0.59]	chr19	1483930	2	CDS	CDS:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5:ENST00000600672.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.5586	5.197955	5.8373100000000004	0.00161229	2.06883e-6	0.0169168	7.35008e-5
chr5	127511857	127511955	6813461	0	-	0.571429	(0.53,0.59]	chr5	521477	5	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP1	ENSG00000250859.1	ENST00000510896.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	42	2	4.5586	5.197955	5.8373100000000004	0.00161229	2.06883e-6	0.0169168	7.35008e-5
chr12	69597967	69598019	12943538	0	+	0.480769	(0.455,0.49]	chr12	1009006	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	5.14774	5.19749	5.24724	7.45457e-5	3.09759e-5	0.00142165	7.62166e-4
chr2	10345150	10345249	1630312	0	+	0.484848	(0.455,0.49]	chr2	161786	146	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	5.14774	5.19749	5.24724	7.45457e-5	3.09759e-5	0.00142165	7.62166e-4
chr10	87784603	87784670	11608183	0	-	0.522388	(0.49,0.53]	chr10	884054	3	CDS	CDS:UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1:ENST00000495903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.4279	5.19722	5.96654	0.00196987	4.9393e-7	0.0193972	2.18407e-5
chrX	68533992	68534092	18720699	0	+	0.44	(0.42,0.455]	chrX	1597227	21	UTR3	UTR3:EXON_MRNA	YIPF6	ENSG00000181704.12	ENST00000374622.3:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.62315	5.196895	6.77064	4.234e-4	6.24308e-10	0.00613535	6.87794e-8
chr1	42746696	42746796	966418	0	-	0.62	(0.59,1]	chr1	101703	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000462474.5:ENST00000472802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.44671	5.19683	5.94695	0.00931497	1.71208e-5	0.0586162	4.31898e-4
chr12	56142834	56142933	12898419	0	+	0.565657	(0.53,0.59]	chr12	1004305	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550878.5:ENST00000548142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	5.19469	5.196759999999999	5.19883	8.7034e-5	1.0578e-8	0.00177086	8.1539200000000005e-07
chr11	44206825	44206923	11927209	0	+	0.387755	(0.36,0.39]	chr11	911599	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	4.9168	5.196645	5.47649	4.3709e-6	6.76244e-8	1.52262e-4	4.00219e-6
chr1	16535272	16535366	870837	0	-	0.617021	(0.59,1]	chr1	88812	10	EXON_LNCRNA	EXON_LNCRNA	LINC01783	ENSG00000233421.5	ENST00000415386.2	lncRNA	lncRNA	lncRNA	lncRNA	64	4995	2	4.83879	5.19655	5.55431	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	8485869	8485958	17220829	0	+	0.696629	(0.59,1]	chr19	1417692	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000597270.1:ENST00000597081.1:ENST00000596295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.47517	5.196400000000001	5.91763	0.00735659	2.85329e-5	0.0491503	7.16403e-4
chr5	80651649	80651747	6667612	0	-	0.357143	(0.33,0.36]	chr5	514741	17	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	31	828	2	5.09236	5.196175	5.29999	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	49273278	49273330	12865721	0	+	0.25	[0,0.29]	chr12	999065	2	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	260	2	4.34926	5.19591	6.04256	1.53704e-8	1e-12	1.2249e-6	2.25522e-10
chr7	130192688	130192755	9063416	0	-	0.447761	(0.42,0.455]	chr7	692185	2	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	147	2	4.18371	5.195385	6.20706	4.32793e-7	1e-12	2.18091e-5	2.25522e-10
chr6	32170936	32171003	7664674	0	-	0.567164	(0.53,0.59]	chr6	586112	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000476663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	4.77222	5.195259999999999	5.6183	6.67251e-4	2.43197e-10	0.00867533	2.99496e-8
chr13	20961604	20961702	13633279	0	+	0.591837	(0.59,1]	chr13	1074745	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP54	ENSG00000213621.3	ENST00000454001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	127	2	3.94406	5.195155	6.44625	8.69349e-6	1.58565e-6	2.45289e-4	6.47888e-5
chr1	25316999	25317052	103917	0	+	0.566038	(0.53,0.59]	chr1	12172	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RHD	ENSG00000187010.21	ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.86823	5.194955	5.52168	4.35895e-4	1.48967e-5	0.00623608	3.81697e-4
chr20	47210175	47210271	17993109	0	-	0.5625	(0.53,0.59]	chr20	1524924	11	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.86823	5.194955	5.52168	4.35895e-4	1.48967e-5	0.00623608	3.81697e-4
chr16	28486414	28486482	15905580	0	-	0.705882	(0.59,1]	chr16	1273632	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-435I10.4:CLN3	ENSG00000261832.6:ENSG00000188603.22	ENST00000635887.1:ENST00000637376.1:ENST00000636078.1:ENST00000636503.1:ENST00000568224.4:ENST00000636017.1:ENST00000636866.1:ENST00000637299.1:ENST00000636766.1:ENST00000637100.1:ENST00000569430.7:ENST00000359984.12:ENST00000360019.8:ENST00000636147.2:ENST00000563874.5:ENST00000357857.14:ENST00000333496.14:ENST00000561689.6:ENST00000395653.9:ENST00000357806.11:ENST00000568076.6:ENST00000637184.1:ENST00000636839.1:ENST00000637107.1:ENST00000636351.1:ENST00000636977.1:ENST00000637578.1:ENST00000635958.1:ENST00000567963.6:ENST00000568452.6:ENST00000637871.1:ENST00000565316.6:ENST00000628023.3:ENST00000636228.1:ENST00000635861.1:ENST00000636172.1:ENST00000355477.10:ENST00000565140.5:ENST00000566057.5:ENST00000569030.5:ENST00000637699.1:ENST00000568422.6:ENST00000636853.1:ENST00000566824.6:ENST00000635973.1:ENST00000568497.6:ENST00000564574.5:ENST00000568472.6:ENST00000566083.6:ENST00000565778.6:ENST00000565047.1:ENST00000568558.6:ENST00000565688.5:ENST00000567495.6:ENST00000561505.2:ENST00000637985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.7151	5.194735	5.67437	0.00412279	6.83706e-5	0.0325842	0.00132577
chr3	128631947	128632017	4441430	0	-	0.471429	(0.455,0.49]	chr3	369019	1	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	4.33565	5.194695	6.05374	5.69287e-6	1.51401e-12	1.88744e-4	3.24653e-10
chr20	45640878	45640976	17986379	0	-	0.612245	(0.59,1]	chr20	1523961	5	EXON_PSEUDO	EXON_PSEUDO	RPS2P7	ENSG00000235508.3	ENST00000447334.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	50	2	4.74378	5.194465	5.64515	0.00312942	1.07144e-4	0.0264364	0.00206452
chr12	7136922	7137016	12717235	0	+	0.670213	(0.59,1]	chr12	987673	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000540931.1:ENST00000535668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.63106	5.19435	5.75764	0.00537945	4.53637e-5	0.0406564	9.4617e-4
chr16	74306103	74306195	15739434	0	+	0.402174	(0.39,0.42]	chr16	1254008	5	UTR3	UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	4.58104	5.194195	5.80735	1.0275e-6	4.99312e-7	4.08333e-5	2.4714e-5
chr11	125620068	125620126	12194540	0	+	0.465517	(0.455,0.49]	chr11	940800	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	125	2	4.48768	5.194105	5.90053	4.02654e-7	2.60806e-10	2.05231e-5	3.17815e-8
chr6	158785308	158785399	8044097	0	-	0.549451	(0.53,0.59]	chr6	614951	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	5.11707	5.19397	5.27087	1.35965e-4	5.9416e-5	0.00231202	0.00130151
chr19	437183	437277	17415583	0	-	0.56383	(0.53,0.59]	chr19	1451638	1	INTRON	INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	5.12301	5.193960000000001	5.26491	1.2852e-4	6.31437e-5	0.00241206	0.00124286
chr6	33250745	33250840	7668734	0	-	0.557895	(0.53,0.59]	chr6	587357	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	5.12301	5.193960000000001	5.26491	1.2852e-4	6.31437e-5	0.00241206	0.00124286
chr8	37749558	37749632	9289984	0	+	0.486486	(0.455,0.49]	chr8	710349	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000519638.3:ENST00000521993.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	4.59599	5.193709999999999	5.79143	9.38471e-7	8.96581e-7	4.03386e-5	3.79261e-5
chr22	28070624	28070724	18457564	0	-	0.32	(0.29,0.33]	chr22	1574703	143	INTRON	INTRON	TTC28	ENSG00000100154.14	ENST00000397906.6:ENST00000612946.4:ENST00000442232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	5.0833	5.19342	5.30354	4.57622e-5	1.89876e-5	0.00105479	4.64808e-4
chr10	100549034	100549133	11220769	0	+	0.575758	(0.53,0.59]	chr10	854069	10	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	5.04668	5.193215	5.33975	3.63266e-8	2.93156e-9	2.34568e-6	2.91582e-7
chr12	93641107	93641203	13473456	0	-	0.46875	(0.455,0.49]	chr12	1059444	4	EXON_PSEUDO	EXON_PSEUDO	RP11-887P2.3	ENSG00000186076.5	ENST00000548270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.63978	5.19317	5.74656	6.94032e-4	1.95355e-6	0.00876781	7.00948e-5
chrX	154435427	154435505	18917912	0	+	0.615385	(0.59,1]	chrX	1611923	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	4.61797	5.19312	5.76827	5.97759e-5	3.73949e-6	0.00130766	1.21565e-4
chr2	70088714	70088814	1878488	0	+	0.52	(0.49,0.53]	chr2	177397	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	8	335	2	5.04886	5.19276	5.33666	6.65512e-12	1e-12	1.32136e-9	2.25522e-10
chr1	226065655	226065727	738358	0	+	0.486111	(0.455,0.49]	chr1	74469	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	135	2	4.34121	5.192550000000001	6.04389	1.26641e-7	1e-12	6.8458e-6	2.46312e-10
chr11	27888936	27889036	12317008	0	-	0.48	(0.455,0.49]	chr11	952778	2	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	132	2	5.00655	5.1918	5.37705	9.81265e-10	2.93283e-10	1.12615e-7	3.53808e-8
chr20	36653421	36653519	17957212	0	-	0.428571	(0.42,0.455]	chr20	1521497	18	UTR3	UTR3:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.54792	5.191625	5.83533	9.66045e-4	1.15767e-6	0.0115185	4.52486e-5
chr6	30676583	30676681	7658821	0	-	0.5	(0.49,0.53]	chr6	584161	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615892.4:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	4.20376	5.191409999999999	6.17906	1.43152e-5	1.01082e-7	4.04062e-4	5.6272e-6
chr16	3193921	3194020	15497158	0	+	0.565657	(0.53,0.59]	chr16	1228505	22	INTRON	INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	7	334	2	5.07103	5.191255	5.31148	1.15421e-11	1e-12	1.97104e-9	2.46312e-10
chr2	211774452	211774552	3149799	0	-	0.45	(0.42,0.455]	chr2	278203	234	INTRON	INTRON	ERBB4	ENSG00000178568.15	ENST00000342788.9:ENST00000402597.6:ENST00000436443.5:ENST00000484594.5:ENST00000260943.10:ENST00000484474.1:ENST00000435846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.40276	5.1912400000000005	5.97972	0.0017618	4.13864e-7	0.0180053	1.88179e-5
chr17	2185268	2185368	16404710	0	-	0.47	(0.455,0.49]	chr17	1335209	121	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000572369.5:ENST00000575176.5:ENST00000572205.5:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.87186	5.191145000000001	5.51043	2.33781e-4	9.08728e-6	0.00385436	2.53877e-4
chr19	44987178	44987259	17350270	0	+	0.481481	(0.455,0.49]	chr19	1439372	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000589158.1:ENST00000588274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.87186	5.191145000000001	5.51043	2.33781e-4	9.08728e-6	0.00385436	2.53877e-4
chr21	15878772	15878872	18052309	0	+	0.39	(0.36,0.39]	chr21	1532047	4	UTR3	UTR3:EXON_MRNA	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000478932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	4.07544	5.19085	6.30626	3.61377e-5	2.02323e-8	8.73633e-4	1.41998e-6
chr19	49335540	49335609	17369670	0	+	0.492754	(0.49,0.53]	chr19	1442729	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.55929	5.19073	5.82217	0.00116196	1.36598e-6	0.0130851	5.18684e-5
chr6	160959164	160959264	7531623	0	+	0.52	(0.49,0.53]	chr6	575290	1	SS5_PROX	SS5_PROX:INTRON	RP3-428L16.1	ENSG00000231863.2	ENST00000417479.2	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.28332	5.190545	6.09777	0.00338762	1.87775e-7	0.0288632	9.63683e-6
chr17	58090173	58090273	16287302	0	+	0.4	(0.39,0.42]	chr17	1320910	10	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	6	213	2	4.99782	5.190379999999999	5.38294	3.02871e-10	1e-12	3.64116e-8	2.46312e-10
chrX	77856732	77856802	19129261	0	-	0.342857	(0.33,0.36]	chrX	1626886	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	5.07754	5.1902	5.30286	7.92926e-5	1.23392e-5	0.00150306	3.58359e-4
chr5	109770447	109770541	6142920	0	+	0.489362	(0.455,0.49]	chr5	479943	2	CDS	CDS:EXON_MRNA	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.0204	5.1895050000000005	6.35861	0.00736097	1.95116e-8	0.0490627	1.37715e-6
chr8	108228266	108228328	10002571	0	-	0.403226	(0.39,0.42]	chr8	754193	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000677746.1:ENST00000523646.1:ENST00000676931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	526	2	5.04811	5.18879	5.32947	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	19120764	19120861	17502062	0	-	0.57732000000000006	(0.53,0.59]	chr19	1468651	1	CDS	CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000591443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	119	2	3.55221	5.188425	6.82464	1.46041e-6	1.06121e-9	6.04757e-5	1.10387e-7
chr11	44126815	44126885	11926396	0	+	0.542857	(0.53,0.59]	chr11	911550	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.39416	5.188335	6.98251	0.00126006	2.62499e-10	0.013837	3.19655e-8
chr6	116258759	116258848	7908785	0	-	0.561798	(0.53,0.59]	chr6	605646	4	EXON_PSEUDO	EXON_PSEUDO	RP3-486I3.4	ENSG00000233558.1	ENST00000435100.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	5.04298	5.188245	5.33351	1.91383e-4	4.35359e-5	0.0032874	0.00091744700000000005
chr2	239915888	239915988	3244907	0	-	0.46	(0.455,0.49]	chr2	285963	25	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.97258	5.18814	5.4037	1.84876e-4	1.20695e-5	0.00296795	3.52389e-4
chr7	43274242	43274327	8255068	0	+	0.447059	(0.42,0.455]	chr7	628625	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	HECW1:AC004692.5	ENSG00000002746.15:ENSG00000213717.3	ENST00000490954.2:ENST00000453890.5:ENST00000395891.7:ENST00000492310.5:ENST00000464944.1:ENST00000455430.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	3	134	2	5.13373	5.18795	5.24217	3.28328e-9	8.81536e-11	3.2242e-7	1.21562e-8
chr11	61964460	61964549	12406724	0	-	0.382022	(0.36,0.39]	chr11	960789	3	UTR3	UTR3:EXON_MRNA:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	4.23248	5.187945	6.14341	1.28371e-5	7.63855e-8	3.70041e-4	4.42542e-6
chr3	33124493	33124579	3397633	0	+	0.5	(0.49,0.53]	chr3	295483	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1:ENST00000485310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	4.99034	5.187945	5.38555	1.6002e-4	1.36815e-9	0.00286408	1.38676e-7
chr15	78927726	78927781	15398647	0	-	0.472727	(0.455,0.49]	chr15	1217571	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1:ENST00000529263.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	34	2	5.07172	5.1878150000000005	5.30391	8.3067e-5	3.12735e-5	0.00171126	6.97306e-4
chr4	41939195	41939289	4809329	0	+	0.478723	(0.455,0.49]	chr4	396922	1	CDS	CDS:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000510383.1:ENST00000504986.6:ENST00000506794.1:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	5.07172	5.1878150000000005	5.30391	8.3067e-5	3.12735e-5	0.00171126	6.97306e-4
chr2	112658903	112658983	2001874	0	+	0.5375	(0.53,0.59]	chr2	190038	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	122	2	5.00458	5.187805	5.37103	5.00256e-8	2.29476e-9	3.40358e-6	2.17437e-7
chr4	140543452	140543519	5131587	0	+	0.358209	(0.33,0.36]	chr4	415460	1	CDS	CDS:EXON_MRNA	ELMOD2	ENSG00000179387.10	ENST00000323570.8:ENST00000512057.1:ENST00000502290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.96487	5.18721	5.40955	9.26851e-5	1.14206e-5	0.00185187	3.08108e-4
chr5	10415578	10415669	5875346	0	+	0.527473	(0.49,0.53]	chr5	462024	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1:ENST00000514312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	96	2	3.48945	5.18672	6.88399	9.31926e-6	2.51067e-10	2.86425e-4	3.07559e-8
chr14	22589057	22589157	14526156	0	-	0.53	(0.49,0.53]	chr14	1137877	1	CDS_START	CDS_START:CDS:EXON_MRNA	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	4.45323	5.186615	5.92	2.6067e-6	6.89283e-7	9.88864e-5	2.91313e-5
chr16	18795463	18795522	15877104	0	-	0.474576	(0.455,0.49]	chr16	1269310	1	CDS	CDS:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	146	2	4.91224	5.186195	5.46015	6.63701e-8	2.74925e-12	4.34166e-6	5.55071e-10
chr1	116390781	116390836	423809	0	+	0.490909	(0.49,0.53]	chr1	41791	1	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	4	204	2	4.45834	5.184695	5.91105	4.55418e-8	1e-12	3.14461e-6	2.25522e-10
chr14	21351674	21351774	14521125	0	-	0.38	(0.36,0.39]	chr14	1137303	3	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	91	2	3.57362	5.18459	6.79556	1.06281e-6	4.70566e-11	4.21166e-5	7.63702e-9
chr7	66955912	66956010	8307715	0	+	0.367347	(0.36,0.39]	chr7	633399	5	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.86603	5.18449	5.50295	1.68962e-4	7.4907e-6	0.00297945	2.17853e-4
chr13	46374590	46374622	14010929	0	-	0.34375	(0.33,0.36]	chr13	1098727	1	SS5_PROX	SS5_PROX:INTRON	RUBCNL	ENSG00000102445.20	ENST00000429979.6:ENST00000676114.1:ENST00000378781.7:ENST00000378797.6:ENST00000441284.6:ENST00000676307.1:ENST00000389908.7:ENST00000676063.1:ENST00000675992.1:ENST00000676051.1:ENST00000675291.1:ENST00000378787.7:ENST00000378784.8:ENST00000409879.6:ENST00000675585.1:ENST00000417405.2:ENST00000631139.2:ENST00000439642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.87765	5.18429	5.49093	2.2423e-4	3.50796e-6	0.00344776	1.26658e-4
chr7	150949414	150949508	9128648	0	-	0.319149	(0.29,0.33]	chr7	697467	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	75	2	5.13198	5.18383	5.23568	1.0981e-8	3.41326e-9	9.2299e-7	3.06597e-7
chr5	151259754	151259835	6297905	0	+	0.54321	(0.53,0.59]	chr5	491670	1	CDS	CDS:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000523466.5:ENST00000357164.4:ENST00000523004.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.43863	5.183735	5.92884	0.00254763	1.11987e-6	0.0233955	4.4003e-5
chr4	165340279	165340379	5206938	0	+	0.37	(0.36,0.39]	chr4	420277	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	9	299	2	4.99772	5.1835249999999995	5.36933	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	84777837	84777933	2769138	0	-	0.34375	(0.33,0.36]	chr2	245559	7	EXON_PSEUDO	EXON_PSEUDO	LDHAP7	ENSG00000235847.2	ENST00000398295.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	29	2	5.16798	5.18337	5.19876	4.80331e-5	2.37278e-5	9.91058e-4	6.1689e-4
chr2	65205400	65205498	1853944	0	+	0.367347	(0.36,0.39]	chr2	175914	4	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	77	2	4.66059	5.183339999999999	5.70609	8.51693e-7	6.96817e-9	3.87319e-5	5.67344e-7
chr1	159307832	159307932	494320	0	+	0.44	(0.42,0.455]	chr1	52844	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FCER1A	ENSG00000179639.10	ENST00000368115.5:ENST00000368114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.05954	5.182885000000001	6.30623	0.00617886	3.37116e-8	0.0439741	2.19621e-6
chr21	33914449	33914500	18224376	0	-	0.529412	(0.49,0.53]	chr21	1546675	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5:ENST00000496044.5:ENST00000484627.5:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	177	2	5.12071	5.182544999999999	5.24438	4.21859e-9	3.96483e-12	4.00158e-7	7.67623e-10
chr19	53874013	53874109	17388664	0	+	0.604167	(0.59,1]	chr19	1446781	5	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000448420.5:ENST00000391769.2:ENST00000391768.2	protein_coding	protein_coding	protein_coding	protein_coding	7	532	2	5.05663	5.182535	5.30844	1.00612e-9	2.00026e-11	1.14899e-7	3.23824e-9
chr1	34981943	34982043	936088	0	-	0.5	(0.49,0.53]	chr1	98339	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-244H3.5:RP11-244H3.4:TMEM35B	ENSG00000284773.1:ENSG00000271741.1:ENSG00000243749.1	ENST00000417456.1:ENST00000487874.1:ENST00000373337.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	5.16557	5.1822	5.19883	6.36135e-5	6.30063e-5	0.00136069	0.00124286
chr11	119047946	119048013	12626452	0	-	0.537313	(0.53,0.59]	chr11	979761	1	CDS	CDS:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000527738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	132	2	4.22219	5.181655	6.14112	2.39342e-7	5.21463e-9	1.32863e-5	4.4104e-7
chr6	26234553	26234646	7647248	0	-	0.569892	(0.53,0.59]	chr6	582563	3	CDS	CDS:EXON_MRNA	H1-3	ENSG00000124575.7	ENST00000244534.7	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	4.51944	5.181380000000001	5.84332	2.00484e-6	1.90853e-6	7.59317e-5	7.16652e-5
chr5	132210283	132210363	6833637	0	-	0.625	(0.59,1]	chr5	522722	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	4.18569	5.180905	6.17612	5.09234e-5	4.87365e-6	0.00114531	1.51951e-4
chr17	16432048	16432132	16142000	0	+	0.595238	(0.59,1]	chr17	1300724	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6:ENST00000581560.5:ENST00000580788.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.86977	5.180804999999999	5.49184	0.00246014	1.61513e-4	0.0230058	0.00265627
chr2	219224573	219224666	3191334	0	-	0.526882	(0.49,0.53]	chr2	280883	6	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.83319	5.180775000000001	6.52836	1.34601e-4	5.94027e-9	0.00249552	4.95921e-7
chr1	112671319	112671418	411485	0	+	0.373737	(0.36,0.39]	chr1	40540	13	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	4.31938	5.180745	6.04211	1.57425e-7	1.2127e-12	9.31495e-6	2.6727e-10
chr19	49534327	49534395	17371108	0	+	0.720588	(0.59,1]	chr19	1443241	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000597801.1:ENST00000593644.1:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.34487	5.180545	6.01622	0.0123678	1.18141e-5	0.0705839	3.14877e-4
chr2	26386353	26386444	1687305	0	+	0.43956	(0.42,0.455]	chr2	164951	1	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.18	ENST00000613142.4:ENST00000260585.12	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	4.52766	5.18001	5.83236	1.58778e-6	5.6476e-7	5.89925e-5	2.73442e-5
chr5	176493998	176494084	6402541	0	+	0.44186	(0.42,0.455]	chr5	497355	1	CDS	CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000504983.1:ENST00000513627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	77	2	4.22167	5.179729999999999	6.13779	3.43957e-7	5.19796e-8	1.60837e-5	3.50456e-6
chr8	11845625	11845707	9699213	0	-	0.573171	(0.53,0.59]	chr8	734807	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	124	2	5.12301	5.1796299999999995	5.23625	1.2852e-4	5.36633e-11	0.00241206	7.82045e-9
chr3	153917054	153917154	3820265	0	+	0.33	(0.29,0.33]	chr3	325798	343	INTRON	INTRON	RP11-217E22.5	ENSG00000243486.1	ENST00000463297.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.45534	5.17958	5.90382	0.00110984	3.10438e-7	0.0127344	1.47195e-5
chr11	44197923	44198018	11927117	0	+	0.473684	(0.455,0.49]	chr11	911593	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000534048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.36307	5.179525	5.99598	0.00218641	3.33072e-7	0.0208941	1.56608e-5
chr11	60062536	60062605	11961628	0	+	0.449275	(0.42,0.455]	chr11	915666	2	CDS	CDS:EXON_MRNA:INTRON	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000528298.5:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.80064	5.17883	5.55702	3.0479e-4	7.30994e-6	0.00472028	2.13219e-4
chr9	92108739	92108834	10736420	0	-	0.452632	(0.42,0.455]	chr9	812160	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5:ENST00000337841.4:ENST00000477888.1:ENST00000488921.5:ENST00000461132.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.80064	5.17883	5.55702	3.0479e-4	7.30994e-6	0.00472028	2.13219e-4
chr6	170656528	170656628	7556950	0	+	0.54	(0.53,0.59]	chr6	576995	161	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.66348	5.178795	5.69411	0.00107799	5.01544e-6	0.0118238	1.7067e-4
chr3	184150252	184150343	3947928	0	+	0.571429	(0.53,0.59]	chr3	331911	7	EXON_PSEUDO	EXON_PSEUDO	RP11-778D9.4	ENSG00000228205.1	ENST00000433853.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	40	2	4.66936	5.178735	5.68811	0.00103174	5.40688e-6	0.0121443	1.64762e-4
chr17	78971675	78971773	16698069	0	-	0.602041	(0.59,1]	chr17	1376215	1	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	5.07453	5.178685	5.28284	0.00117617	4.04404e-4	0.0132131	0.00550292
chr6	32835221	32835290	7667204	0	-	0.550725	(0.53,0.59]	chr6	586804	2	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.95825	5.178625	5.399	2.87508e-4	3.02387e-5	0.00457439	6.78876e-4
chrX	120449048	120449128	19196258	0	-	0.325	(0.29,0.33]	chrX	1632003	2	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	122	2	3.99417	5.178505	6.36284	3.53734e-6	1e-12	1.27543e-4	2.25522e-10
chr2	187465195	187465292	3070151	0	-	0.494845	(0.49,0.53]	chr2	271827	11	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	137	2	4.79945	5.17809	5.55673	2.05707e-9	2.7394e-10	2.14084e-7	3.32427e-8
chr1	15933773	15933873	71874	0	+	0.53	(0.49,0.53]	chr1	8104	58	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	5.08061	5.17769	5.27477	1.00361e-4	4.14521e-5	0.00196575	8.8376e-4
chr7	860127	860212	8093771	0	+	0.517647	(0.49,0.53]	chr7	618463	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	5.08061	5.17769	5.27477	1.00361e-4	4.14521e-5	0.00196575	8.8376e-4
chr1	156015014	156015069	1313123	0	-	0.545455	(0.53,0.59]	chr1	133092	2	CDS	CDS:EXON_MRNA:INTRON	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5:ENST00000368311.5:ENST00000472898.5:ENST00000466905.4:ENST00000474377.5:ENST00000531917.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	121	2	5.00458	5.177355	5.35013	5.00256e-8	2.75928e-9	3.40358e-6	2.54269e-7
chr6	35555970	35556068	7130948	0	+	0.438776	(0.42,0.455]	chr6	549047	2	EXON_PSEUDO	EXON_PSEUDO	RP3-340B19.2	ENSG00000219023.1	ENST00000403958.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	4.67981	5.177334999999999	5.67486	5.38444e-4	3.42598e-6	0.00744072	1.12506e-4
chr10	96528103	96528177	11640163	0	-	0.391892	(0.39,0.42]	chr10	886575	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	4.81722	5.177175	5.53713	3.48373e-6	1.74741e-9	1.26023e-4	1.71923e-7
chr12	53665313	53665364	13340964	0	-	0.470588	(0.455,0.49]	chr12	1049267	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	316	2	4.75717	5.177085	5.597	1.06821e-11	1e-12	2.02469e-9	2.25522e-10
chrX	150232032	150232128	19265101	0	-	0.416667	(0.39,0.42]	chrX	1636623	11	EXON_PSEUDO	EXON_PSEUDO	XRCC6P2	ENSG00000234825.3	ENST00000457831.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	4.89196	5.176405	5.46085	2.62166e-4	5.81708e-6	0.0039188	1.921e-4
chr8	30352937	30353033	9253462	0	+	0.520833	(0.49,0.53]	chr8	708964	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	100	2	4.24919	5.176035	6.10288	1.33258e-7	2.11061e-8	8.01671e-6	1.47536e-6
chr1	180166540	180166591	582597	0	+	0.54902	(0.53,0.59]	chr1	60521	2	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.77222	5.175765	5.57931	6.67251e-4	1.05602e-5	0.00867533	2.89015e-4
chr1	203710953	203711030	669576	0	+	0.558442	(0.53,0.59]	chr1	67450	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.77222	5.175765	5.57931	6.67251e-4	1.05602e-5	0.00867533	2.89015e-4
chr5	138559955	138560047	6862399	0	-	0.576087	(0.53,0.59]	chr5	525205	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	89	2	4.25518	5.175655	6.09613	3.47717e-7	3.09064e-7	1.64892e-5	1.62117e-5
chr1	39028724	39028824	145799	0	+	0.49	(0.455,0.49]	chr1	18085	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	4	157	2	4.25376	5.17561	6.09746	1.67588e-8	1e-12	1.32342e-6	2.25522e-10
chr3	60837800	60837900	4228280	0	-	0.32	(0.29,0.33]	chr3	356010	154	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.24387	5.17546	6.10705	0.00263476	6.22381e-8	0.0239118	3.71811e-6
chr7	869348	869432	8093867	0	+	0.559524	(0.53,0.59]	chr7	618480	1	CDS	CDS:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	4.82227	5.174965	5.52766	1.38993e-5	2.15841e-7	3.94563e-4	1.08163e-5
chr2	57290224	57290321	2672986	0	-	0.319588	(0.29,0.33]	chr2	239325	7	EXON_LNCRNA	EXON_LNCRNA	RP11-111G13.1	ENSG00000285755.2	ENST00000649346.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.92772	5.1749	5.42208	1.56621e-4	5.31413e-6	0.00259991	1.7831e-4
chr5	115616208	115616308	6777008	0	-	0.4	(0.39,0.42]	chr5	519914	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	4.81244	5.174785	5.53713	3.48373e-6	1.71008e-7	1.26023e-4	8.87341e-6
chr19	58394750	58394806	17412772	0	+	0.589286	(0.53,0.59]	chr19	1451041	1	UTR3	UTR3:EXON_MRNA	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	124	2	4.60293	5.1742550000000005	5.74558	3.61407e-6	1.10496e-9	1.29307e-4	1.14257e-7
chr1	153960590	153960690	1300332	0	-	0.57	(0.53,0.59]	chr1	130746	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1:ENST00000413622.5:ENST00000417348.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.62204	5.174025	6.72601	4.3021e-4	2.47831e-9	0.00620274	2.32242e-7
chr12	54378373	54378469	13343565	0	-	0.5625	(0.53,0.59]	chr12	1049711	21	INTRON	INTRON	ZNF385A	ENSG00000161642.18	ENST00000551109.5:ENST00000352268.10:ENST00000394313.7:ENST00000338010.9:ENST00000550779.5:ENST00000546970.5:ENST00000552382.5:ENST00000551771.5:ENST00000546919.5:ENST00000549937.5:ENST00000549962.5:ENST00000547210.5:ENST00000550774.5:ENST00000550120.1:ENST00000551864.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.5586	5.173935	5.78927	0.00161229	2.83401e-6	0.0169168	9.62519e-5
chr19	12922529	12922580	17472046	0	-	0.568627	(0.53,0.59]	chr19	1463321	2	UTR3	UTR3:EXON_MRNA	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.5586	5.173935	5.78927	0.00161229	2.83401e-6	0.0169168	9.62519e-5
chr2	130074243	130074343	2873165	0	-	0.56	(0.53,0.59]	chr2	256912	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	POTEF	ENSG00000196604.13	ENST00000409914.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.5586	5.173935	5.78927	0.00161229	2.83401e-6	0.0169168	9.62519e-5
chr1	11922714	11922811	861979	0	-	0.628866	(0.59,1]	chr1	87466	2	CDS	CDS:EXON_MRNA	KIAA2013	ENSG00000116685.16	ENST00000376572.8:ENST00000616327.1:ENST00000376576.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.63106	5.17383	5.7166	0.00537945	5.56053e-5	0.0406564	0.0011271
chr2	54982514	54982583	2666205	0	-	0.42029	(0.42,0.455]	chr2	238487	1	CDS	CDS:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	8	299	2	5.09549	5.1730350000000005	5.25058	1.53427e-11	1e-12	2.77943e-9	2.25522e-10
chr19	4538495	4538586	17432452	0	-	0.615385	(0.59,1]	chr19	1455209	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTB-50L17.14:LRG1	ENSG00000267385.1:ENSG00000171236.10	ENST00000586020.1:ENST00000306390.7:ENST00000586883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.7151	5.172974999999999	5.63085	0.00412279	8.43355e-5	0.0325842	0.0015859
chr19	10284224	10284320	17224631	0	+	0.59375	(0.59,1]	chr19	1418500	3	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.7151	5.172974999999999	5.63085	0.00412279	8.43355e-5	0.0325842	0.0015859
chr20	1369168	1369263	17875161	0	-	0.442105	(0.42,0.455]	chr20	1512311	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	4.56888	5.1716999999999995	5.77452	1.1745e-6	8.63204e-7	4.57782e-5	3.91474e-5
chr7	103566223	103566317	8963939	0	-	0.404255	(0.39,0.42]	chr7	686220	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.3313	5.171605	6.01191	0.00209984	2.69432e-7	0.0204266	1.30302e-5
chr22	19063201	19063278	18430305	0	-	0.545455	(0.53,0.59]	chr22	1570376	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000608548.1:ENST00000473832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	157	2	4.59035	5.17106	5.75177	1.96972e-8	6.91065e-11	1.51872e-6	9.8048e-9
chr2	37203749	37203848	1742663	0	+	0.323232	(0.29,0.33]	chr2	169570	20	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000392061.6	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.09886	5.170755	6.24265	4.1989e-5	2.00502e-8	9.84661e-4	1.40889e-6
chr14	103665420	103665520	14504737	0	+	0.52	(0.49,0.53]	chr14	1134355	21	INTRON	INTRON	RP11-73M18.2:KLC1	ENSG00000256500.6:ENSG00000126214.21	ENST00000472726.3:ENST00000348520.10:ENST00000380038.7:ENST00000389744.8:ENST00000334553.10:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.67972	5.170719999999999	5.66172	6.94757e-4	3.99372e-6	0.00876781	1.28691e-4
chrY	14700758	14700858	19319275	0	+	0.28	[0,0.29]	chrY	1641914	605	INTRON	INTRON	NLGN4Y	ENSG00000165246.14	ENST00000643089.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000339174.9:ENST00000413217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.57416	5.170675	5.76719	6.75561e-4	7.60108e-7	0.00873562	3.16567e-5
chr4	86949668	86949757	5516770	0	-	0.651685	(0.59,1]	chr4	441809	1	EXON_PSEUDO	EXON_PSEUDO	TECRP1	ENSG00000235043.3	ENST00000513307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	259	2	3.7998	5.1706	6.5414	9.02377e-7	8.04503e-8	4.05425e-5	4.64312e-6
chr8	124999503	124999598	9595356	0	+	0.694737	(0.59,1]	chr8	727887	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	2	201	2	4.65298	5.170535	5.68809	3.73496e-6	2.5713e-9	1.32675e-4	2.40182e-7
chr10	125141547	125141647	11732925	0	-	0.56	(0.53,0.59]	chr10	895324	34	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	4.31894	5.169935	6.02093	7.82085e-6	5.66478e-7	2.24148e-4	2.7364e-5
chr8	29059483	29059583	9250753	0	+	0.55	(0.53,0.59]	chr8	708717	29	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	67	2	4.31894	5.169935	6.02093	7.82085e-6	5.66478e-7	2.24148e-4	2.7364e-5
chr12	120211326	120211424	13579793	0	-	0.469388	(0.455,0.49]	chr12	1068824	10	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	3.50048	5.169745	6.83901	5.99835e-5	2.84783e-10	0.00130886	3.44746e-8
chrX	121203566	121203663	19198094	0	-	0.474227	(0.455,0.49]	chrX	1632450	5	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	57	2	4.53876	5.169385	5.80001	1.35407e-6	1.31171e-6	5.53834e-5	5.16241e-5
chr12	120211424	120211523	13579794	0	-	0.525253	(0.49,0.53]	chr12	1068824	11	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.99034	5.16862	5.3469	1.6002e-4	2.75121e-5	0.00286408	6.30607e-4
chr2	135862677	135862748	2898139	0	-	0.507042	(0.49,0.53]	chr2	258536	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.99034	5.16862	5.3469	1.6002e-4	2.75121e-5	0.00286408	6.30607e-4
chr19	39837710	39837776	17563519	0	-	0.515152	(0.49,0.53]	chr19	1475741	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	78	2	4.11904	5.168545	6.21805	7.50378e-7	7.46967e-8	3.48685e-5	4.33833e-6
chr1	668894	668994	823720	0	-	0.59	(0.53,0.59]	chr1	81486	359	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	69	2	3.98115	5.168115	6.35508	6.28226e-5	4.77539e-8	0.00124286	3.2714e-6
chr6	53273281	53273344	7740218	0	-	0.396825	(0.39,0.42]	chr6	594351	2	CDS	CDS:EXON_MRNA:INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	8	267	2	4.88759	5.16803	5.44847	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	86785004	86785097	339494	0	+	0.430108	(0.42,0.455]	chr1	33572	2	EXON_PSEUDO	EXON_PSEUDO	RP4-612B15.2	ENSG00000230721.1	ENST00000447415.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.40276	5.16797	5.93318	0.0017618	5.79703e-7	0.0180053	2.50873e-5
chr1	160292011	160292104	1328691	0	-	0.44086	(0.42,0.455]	chr1	135977	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.40276	5.16797	5.93318	0.0017618	5.79703e-7	0.0180053	2.50873e-5
chr6	85548300	85548368	7825104	0	-	0.426471	(0.42,0.455]	chr6	599471	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-321N4.5:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000504191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.40276	5.16797	5.93318	0.0017618	5.79703e-7	0.0180053	2.50873e-5
chr7	148291004	148291104	8608470	0	+	0.39	(0.36,0.39]	chr7	656561	235	INTRON	INTRON	CNTNAP2	ENSG00000174469.23	ENST00000361727.8:ENST00000636870.1:ENST00000627772.2:ENST00000637020.1:ENST00000628930.2:ENST00000636242.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.42503	5.16752	5.91001	0.00133228	4.5726e-7	0.0144372	2.05025e-5
chr17	63756310	63756350	16634770	0	-	0.375	(0.36,0.39]	chr17	1367590	1	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.99	5.16713	6.34426	6.1616e-5	1.47018e-8	0.00133408	1.07983e-6
chr5	179966873	179966941	7003822	0	-	0.647059	(0.59,1]	chr5	536602	2	CDS	CDS:UTR3:EXON_MRNA	RNF130	ENSG00000113269.14	ENST00000522208.6:ENST00000521389.6:ENST00000261947.4:ENST00000520911.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.82325	5.166885	5.51052	0.002381	0.00019737500000000001	0.0216895	0.00336487
chr3	152429730	152429829	3818164	0	+	0.323232	(0.29,0.33]	chr3	325657	143	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	5.12783	5.166555000000001	5.20528	5.31593e-5	2.18753e-5	0.00108035	5.75389e-4
chr22	20566729	20566817	18298988	0	+	0.545455	(0.53,0.59]	chr22	1553478	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	146	2	3.62659	5.166455	6.70632	9.18488e-8	2.74292e-9	5.1919e-6	2.75444e-7
chrX	152736912	152737006	18912265	0	+	0.595745	(0.59,1]	chrX	1610509	8	CDS	CDS:EXON_MRNA:INTRON	MAGEA12:CSAG4	ENSG00000213401.10:ENSG00000242599.7	ENST00000393869.8:ENST00000357916.8:ENST00000361201.8:ENST00000393900.4	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	47	2	4.9413	5.1662099999999995	5.39112	0.00191468	2.53595e-4	0.0190905	0.00381472
chr1	39962950	39963041	151552	0	+	0.626374	(0.59,1]	chr1	18922	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	MFSD2A:RP3-342P20.2	ENSG00000168389.18:ENSG00000228477.1	ENST00000420632.6:ENST00000372811.10:ENST00000434861.5:ENST00000372809.5:ENST00000483824.5:ENST00000469745.5:ENST00000438210.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	0	47	2	4.97015	5.1660900000000005	5.36203	0.00140057	3.74697e-4	0.0144327	0.00560631
chr1	230262572	230262665	749628	0	+	0.451613	(0.42,0.455]	chr1	76066	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1:ENST00000492568.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.54792	5.16586	5.7838	9.66045e-4	1.6512e-6	0.0115185	6.0825e-5
chr11	11352531	11352628	12274149	0	-	0.443299	(0.42,0.455]	chr11	949139	6	CDS	CDS:EXON_MRNA:INTRON	GALNT18:CSNK2A3	ENSG00000110328.6:ENSG00000254598.3	ENST00000227756.5:ENST00000528848.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.54792	5.16586	5.7838	9.66045e-4	1.6512e-6	0.0115185	6.0825e-5
chr16	74457933	74457994	16031050	0	-	0.42623	(0.42,0.455]	chr16	1287265	2	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.54792	5.16586	5.7838	9.66045e-4	1.6512e-6	0.0115185	6.0825e-5
chr11	62888505	62888593	11974496	0	+	0.693182	(0.59,1]	chr11	918078	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000542922.5:ENST00000539507.1:ENST00000542793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	692	2	4.80212	5.165825	5.52953	2.75385e-10	1.38733e-12	3.70145e-8	3.01192e-10
chr10	119500013	119500112	11718127	0	-	0.474747	(0.455,0.49]	chr10	894003	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RGS10	ENSG00000148908.15	ENST00000369103.3:ENST00000392865.5:ENST00000369101.7:ENST00000469575.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.63978	5.165414999999999	5.69105	6.94032e-4	2.83777e-6	0.00876781	9.62519e-5
chr3	32727734	32727802	3396174	0	+	0.470588	(0.455,0.49]	chr3	295362	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CNOT10	ENSG00000182973.19	ENST00000328834.9:ENST00000331889.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000455381.5:ENST00000463697.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.63978	5.165414999999999	5.69105	6.94032e-4	2.83777e-6	0.00876781	9.62519e-5
chr22	37679649	37679749	18363213	0	+	0.5	(0.49,0.53]	chr22	1561882	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LGALS1	ENSG00000100097.12	ENST00000215909.10:ENST00000425542.5:ENST00000489315.5:ENST00000472321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.83319	5.165095	6.497	1.34601e-4	7.74861e-9	0.00249552	6.22462e-7
chr7	55646094	55646189	8289090	0	+	0.515789	(0.49,0.53]	chr7	631304	6	EXON_PSEUDO	EXON_PSEUDO	TUBBP6	ENSG00000235207.1	ENST00000416519.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	4.55929	5.1649650000000005	5.77064	0.00116196	1.94063e-6	0.0130851	6.9799e-5
chr1	25900315	25900415	905268	0	-	0.42	(0.39,0.42]	chr1	94145	3	UTR3	UTR3:EXON_MRNA:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.36441	5.16488	5.96535	4.74002e-6	3.80804e-7	1.63674e-4	1.7481e-5
chr17	48691597	48691694	16578804	0	-	0.443299	(0.42,0.455]	chr17	1361969	6	EXON_PSEUDO	EXON_PSEUDO	RPL9P28	ENSG00000242067.1	ENST00000461606.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	50	2	3.8515	5.164845	6.47819	0.0119089	8.14533e-9	0.0686664	6.49842e-7
chr10	102943704	102943804	11232179	0	+	0.27	[0,0.29]	chr10	855751	162	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.75921	5.16437	5.56953	2.77035e-4	3.09235e-6	0.00444204	1.03588e-4
chr13	29514479	29514579	13945218	0	-	0.58	(0.53,0.59]	chr13	1094549	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	4.04129	5.164255	6.28722	1.5886e-6	8.04768e-8	5.89925e-5	5.1468e-6
chr3	43576691	43576786	4145655	0	-	0.431579	(0.42,0.455]	chr3	346463	1	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.09661	5.16394	6.23127	2.79795e-5	6.12952e-8	7.07527e-4	3.67043e-6
chr12	7814415	7814474	13192352	0	-	0.508475	(0.49,0.53]	chr12	1033375	1	CDS	CDS:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.98834	5.16311	7.33788	2.39968e-4	3.04134e-12	0.00394917	6.09111e-10
chr3	116645801	116645901	4379878	0	-	0.4	(0.39,0.42]	chr3	364390	631	INTRON	INTRON	LSAMP	ENSG00000185565.12	ENST00000474851.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.78878	5.162955	5.53713	4.27222e-4	3.48373e-6	0.00577513	1.26023e-4
chr8	105801444	105801544	9547369	0	+	0.4	(0.39,0.42]	chr8	724804	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.78878	5.162955	5.53713	4.27222e-4	3.48373e-6	0.00577513	1.26023e-4
chr17	63761290	63761351	16634825	0	-	0.459016	(0.455,0.49]	chr17	1367604	2	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	99	2	4.92203	5.1626650000000005	5.4033	7.22227e-8	7.61238e-10	4.22134e-6	9.03421e-8
chr1	153960491	153960590	1300331	0	-	0.666667	(0.59,1]	chr1	130745	4	CDS	CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1:ENST00000413622.5:ENST00000417348.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	95	2	4.24264	5.16248	6.08232	3.77126e-5	8.23309e-6	9.05627e-4	2.34786e-4
chr5	69469966	69470051	6020974	0	+	0.388235	(0.36,0.39]	chr5	471566	2	EXON_PSEUDO	EXON_PSEUDO	RPS27P14	ENSG00000244717.1	ENST00000496370.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.93381	5.1624300000000005	5.39105	1.90009e-4	7.73826e-6	0.00302753	2.43421e-4
chr6	144095336	144095397	8006756	0	-	0.557377	(0.53,0.59]	chr6	611844	1	CDS	CDS:EXON_MRNA	SF3B5	ENSG00000169976.7	ENST00000367569.4	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	4.48151	5.162415	5.84332	2.61211e-6	1.90853e-6	8.99269e-5	7.59317e-5
chr2	61478159	61478253	2690338	0	-	0.361702	(0.36,0.39]	chr2	240316	6	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	241	2	5.06546	5.16231	5.25916	1e-12	1e-12	2.46312e-10	2.25522e-10
chr20	44503814	44503904	17982036	0	-	0.4	(0.39,0.42]	chr20	1523378	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	4.39853	5.1620550000000005	5.92558	2.00458e-7	7.64118e-8	1.13771e-5	4.42542e-6
chr13	48258125	48258180	13724891	0	+	0.381818	(0.36,0.39]	chr13	1081335	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000650479.1:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000607866.1:ENST00000650237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	5.12054	5.161925	5.20331	7.15553e-5	2.53222e-5	0.00137393	6.51851e-4
chr19	44865465	44865562	17349247	0	+	0.670103	(0.59,1]	chr19	1439131	3	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.44671	5.160445	5.87418	0.00931497	2.5071e-5	0.0586162	5.82734e-4
chrX	48460648	48460706	19062752	0	-	0.672414	(0.59,1]	chrX	1620388	1	CDS	CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4:ENST00000480105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	103	2	4.73465	5.1603200000000005	5.58599	1.04372e-4	2.2876e-6	0.00186841	8.86852e-5
chr3	15037200	15037299	3324702	0	+	0.40404	(0.39,0.42]	chr3	292683	20	INTRON	INTRON	NR2C2	ENSG00000177463.15	ENST00000425241.5:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1:ENST00000439011.5:ENST00000495282.1:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	71	2	4.044	5.160265	6.27653	1.34261e-6	1.06521e-8	5.13723e-5	9.02974e-7
chr1	160356676	160356754	496796	0	+	0.487179	(0.455,0.49]	chr1	53505	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000435149.1:ENST00000491390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.89235	5.160255	6.42816	9.60445e-5	1.09292e-8	0.00190731	8.34724e-7
chr11	88294005	88294105	12533062	0	-	0.52	(0.49,0.53]	chr11	972519	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	4.30878	5.1602	6.01162	7.12421e-6	3.55916e-7	2.28404e-4	1.64926e-5
chr11	119048013	119048080	12626453	0	-	0.537313	(0.53,0.59]	chr11	979761	2	CDS	CDS:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000527738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	3.75615	5.16015	6.56415	2.16536e-4	9.5574e-9	0.00361336	7.4729e-7
chr3	196966690	196966790	4666909	0	-	0.58	(0.53,0.59]	chr3	386119	143	INTRON	INTRON	PIGZ	ENSG00000119227.8	ENST00000412723.6:ENST00000443835.1:ENST00000238138.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.00393	5.15972	6.31551	0.0108084	6.83735e-8	0.064368	4.03413e-6
chrX	71240418	71240517	19106937	0	-	0.484848	(0.455,0.49]	chrX	1625381	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.87186	5.15834	5.44482	2.33781e-4	1.36044e-5	0.00385436	3.54469e-4
chr11	2883492	2883586	12233175	0	-	0.37234	(0.36,0.39]	chr11	944788	4	UTR3	UTR3:EXON_MRNA	CDKN1C	ENSG00000129757.15	ENST00000414822.8:ENST00000440480.8:ENST00000430149.3:ENST00000380725.2	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	4.03478	5.158295	6.28181	7.29293e-9	4.23058e-9	6.48212e-7	3.68809e-7
chr12	56275001	56275066	13349874	0	-	0.584615	(0.53,0.59]	chr12	1051015	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000546585.1:ENST00000548849.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	5.11707	5.15795	5.19883	1.35965e-4	8.7034e-5	0.00231202	0.00177086
chr7	101211845	101211897	8953691	0	-	0.557692	(0.53,0.59]	chr7	684685	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000440925.1:ENST00000421736.1:ENST00000463479.1:ENST00000478082.5:ENST00000460475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	5.11707	5.15795	5.19883	1.35965e-4	8.7034e-5	0.00231202	0.00177086
chrX	44741866	44741964	18677984	0	+	0.571429	(0.53,0.59]	chrX	1592581	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP61	ENSG00000214016.3	ENST00000412542.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	5.12301	5.157945	5.19288	1.2852e-4	9.22873e-5	0.00241206	0.0016906
chr9	87525301	87525388	10345643	0	+	0.574713	(0.53,0.59]	chr9	778566	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	DAPK1:RP11-40C6.2	ENSG00000196730.13:ENSG00000219928.2	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5:ENST00000401543.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	5	212	2	4.05804	5.157715	6.25739	2.22301e-8	1e-12	1.68276e-6	2.25522e-10
chr19	23827457	23827555	17276788	0	+	0.602041	(0.59,1]	chr19	1427763	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	5	188	2	3.35507	5.156695	6.95832	6.76147e-6	6.59602e-8	1.99979e-4	4.33113e-6
chr9	35592868	35592951	10246403	0	+	0.481928	(0.455,0.49]	chr9	770720	2	EXON_PSEUDO	EXON_PSEUDO	RPS29P17	ENSG00000227852.1	ENST00000430795.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.36307	5.156245	5.94942	0.00218641	4.68666e-7	0.0208941	2.08717e-5
chr17	8474505	8474605	16432951	0	-	0.36	(0.33,0.36]	chr17	1340589	4	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	4.03706	5.156185000000001	6.27531	5.18043e-5	1.97595e-8	0.00115752	1.39155e-6
chr1	156115018	156115090	485902	0	+	0.597222	(0.59,1]	chr1	51229	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000478063.2:ENST00000469565.6:ENST00000368299.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.86977	5.156065	5.44236	0.00246014	2.02004e-4	0.0230058	0.00317801
chr6	170657628	170657728	7556961	0	+	0.63	(0.59,1]	chr6	576995	172	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.86977	5.156065	5.44236	0.00246014	2.02004e-4	0.0230058	0.00317801
chr6	31779129	31779210	7662391	0	-	0.679012	(0.59,1]	chr6	585256	3	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.89857	5.15591	5.41325	0.00182139	3.01546e-4	0.0176016	0.00472028
chr11	74976856	74976943	12021555	0	+	0.482759	(0.455,0.49]	chr11	926806	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	122	2	3.47527	5.154845	6.83442	2.6723e-7	1.24566e-10	1.29543e-5	1.82586e-8
chr12	113391144	113391241	13101766	0	+	0.505155	(0.49,0.53]	chr12	1022448	27	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.89405	5.154825000000001	5.4156	2.57983e-4	1.84143e-5	0.00419998	4.53637e-4
chr1	65408640	65408711	251411	0	+	0.394366	(0.39,0.42]	chr1	28733	1	CDS	CDS:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.49324	5.1545749999999995	5.81591	0.00108192	1.11558e-6	0.0124943	4.4003e-5
chr6	73292226	73292326	7236156	0	+	0.46	(0.455,0.49]	chr6	557994	18	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-398K22.12:EIF3EP1	ENSG00000229852.4:ENSG00000234882.1	ENST00000662430.1:ENST00000671298.1:ENST00000653052.1:ENST00000441363.1:ENST00000421315.2:ENST00000433978.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	102	2	2.83859	5.154345	7.4701	0.00215336	1e-12	0.0208395	2.25522e-10
chr16	58161409	58161507	15965639	0	-	0.336735	(0.33,0.36]	chr16	1280935	20	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	83	2	4.86979	5.154055	5.43832	1.01417e-7	5.33271e-10	6.34419e-6	6.0171e-8
chr1	110401522	110401583	1222272	0	-	0.47541	(0.455,0.49]	chr1	119459	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000602858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.50805	5.1540300000000006	5.80001	0.00122223	1.35407e-6	0.0135383	5.16241e-5
chr22	41653609	41653690	18381609	0	+	0.481481	(0.455,0.49]	chr22	1564711	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.0992	5.15388	6.20856	2.73975e-5	6.55518e-8	6.95757e-4	3.89009e-6
chr4	165338651	165338714	5206920	0	+	0.365079	(0.36,0.39]	chr4	420270	1	CDS	CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	15	407	2	4.71773	5.15359	5.58945	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	172975798	172975894	6387841	0	+	0.458333	(0.455,0.49]	chr5	496169	4	EXON_PSEUDO	EXON_PSEUDO	CTC-308K20.3	ENSG00000253785.1	ENST00000523057.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	45	2	4.0204	5.15297	6.28554	0.00736097	3.54381e-8	0.0490627	2.29553e-6
chr19	35160708	35160765	17303803	0	+	0.578947	(0.53,0.59]	chr19	1430614	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	131	2	2.80766	5.152795	7.49793	2.30272e-4	2.00739e-12	0.00382267	4.20374e-10
chr16	86138	86232	15815303	0	-	0.617021	(0.59,1]	chr16	1259914	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000610509.1:ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.63106	5.152715	5.67437	0.00537945	6.83706e-5	0.0406564	0.00132577
chr1	114739691	114739790	1239836	0	-	0.393939	(0.39,0.42]	chr1	121433	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000529046.5:ENST00000525132.1:ENST00000534389.2:ENST00000525878.5	protein_coding	protein_coding	protein_coding	protein_coding	5	123	2	4.16899	5.15271	6.13643	3.57957e-8	1.23449e-9	2.56228e-6	1.26637e-7
chr18	23539412	23539470	17037341	0	-	0.551724	(0.53,0.59]	chr18	1400555	2	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000591075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.66936	5.15205	5.63474	0.00103174	7.53339e-6	0.0121443	2.17987e-4
chr3	33014140	33014225	4111110	0	-	0.658824	(0.59,1]	chr3	343432	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	4.94144	5.151735	5.36203	3.74697e-4	4.87881e-7	0.00560631	2.16171e-5
chr2	34681019	34681119	1734542	0	+	0.32	(0.29,0.33]	chr2	169141	27	INTRON	INTRON	LINC01320	ENSG00000228262.10	ENST00000650021.1:ENST00000658168.1:ENST00000664777.1:ENST00000664286.1:ENST00000625995.2:ENST00000423663.5:ENST00000628407.2:ENST00000453774.2:ENST00000626008.2:ENST00000607437.4:ENST00000627935.2:ENST00000616475.4:ENST00000630686.2:ENST00000626688.2:ENST00000604250.3:ENST00000626601.2:ENST00000665109.1:ENST00000627270.2	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.24387	5.15137	6.05887	0.00263476	9.20066e-8	0.0239118	5.19661e-6
chr19	49015020	49015085	17368338	0	+	0.615385	(0.59,1]	chr19	1442331	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	5.13679	5.151275	5.16576	9.28022e-4	6.55716e-4	0.0111748	0.0080931
chr6	166320118	166320216	8077548	0	-	0.397959	(0.39,0.42]	chr6	616647	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000479490.1:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.55723	5.15081	5.74439	0.00117753	7.99187e-7	0.0127276	3.66071e-5
chr8	38364300	38364400	9796335	0	-	0.38	(0.36,0.39]	chr8	740768	4	SS3_PROX	SS3_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1:ENST00000534539.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.86603	5.1500900000000005	5.43415	1.68962e-4	1.15393e-5	0.00297945	3.09736e-4
chr1	179345011	179345076	576427	0	+	0.476923	(0.455,0.49]	chr1	59827	2	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.97258	5.150085	5.32759	1.84876e-4	1.92345e-5	0.00296795	5.18397e-4
chr19	32484512	32484610	17293521	0	+	0.459184	(0.455,0.49]	chr19	1428985	24	UTR3	UTR3:EXON_MRNA	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000592142.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.97258	5.150085	5.32759	1.84876e-4	1.92345e-5	0.00296795	5.18397e-4
chr19	49009972	49010066	17368282	0	+	0.648936	(0.59,1]	chr19	1442312	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	RUVBL2:MIR6798	ENSG00000183207.14:ENSG00000273898.1	ENST00000601968.5:ENST00000595090.6:ENST00000594017.5:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1:ENST00000612887.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	0	46	2	5.07453	5.15001	5.22549	0.00117617	5.13843e-4	0.0132131	0.00665221
chr3	184242442	184242513	4622916	0	-	0.591549	(0.59,1]	chr3	381713	3	UTR3	UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000485912.1:ENST00000455059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	5.10346	5.14997	5.19648	8.40506e-4	7.35336e-4	0.00981548	0.00921643
chr6	149749901	149749956	7481501	0	+	0.618182	(0.59,1]	chr6	571740	1	CDS_START	CDS_START:CDS:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	5.10346	5.14997	5.19648	8.40506e-4	7.35336e-4	0.00981548	0.00921643
chr19	12560912	12561008	17236711	0	+	0.520833	(0.49,0.53]	chr19	1420588	1	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.4279	5.149905	5.87191	0.00196987	9.67449e-7	0.0193972	3.88631e-5
chr19	58596985	58597083	17643738	0	-	0.459184	(0.455,0.49]	chr19	1491214	25	INTRON	INTRON	AC016629.3	ENSG00000269600.2	ENST00000596029.2	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	5.07172	5.14983	5.22794	8.3067e-5	4.80556e-5	0.00171126	9.91058e-4
chr10	123162611	123162683	11299045	0	+	0.416667	(0.39,0.42]	chr10	861582	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2:ENST00000481952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	96	2	3.74093	5.149755	6.55858	2.70505e-7	7.89825e-10	1.30749e-5	9.33634e-8
chr21	45512242	45512298	18145953	0	+	0.714286	(0.59,1]	chr21	1539866	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.54183	5.149735	5.75764	0.0070583	4.53637e-5	0.0478044	9.4617e-4
chr17	59683929	59683985	16295490	0	+	0.267857	[0,0.29]	chr17	1321746	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000496076.1:ENST00000472651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	4.86043	5.149725	5.43902	4.82253e-6	9.6517e-8	1.6551e-4	5.4189e-6
chr6	44231997	44232051	7161506	0	+	0.462963	(0.455,0.49]	chr6	553804	1	CDS	CDS:UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000472176.2:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	154	2	4.82006	5.14968	5.4793	3.61624e-10	7.99144e-11	4.71201e-8	1.11746e-8
chr14	100728935	100729025	14489547	0	+	0.666667	(0.59,1]	chr14	1132110	1	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000392848.9:ENST00000341267.9:ENST00000331224.10:ENST00000556051.1	protein_coding	protein_coding	protein_coding	protein_coding	5	405	2	4.50772	5.14956	5.7914	3.59614e-8	1.34066e-11	2.56668e-6	2.25522e-9
chr1	114706060	114706159	1239466	0	-	0.40404	(0.39,0.42]	chr1	121309	17	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.77106	5.14866	5.52626	3.03764e-4	7.67816e-6	0.00472028	2.20857e-4
chr2	61605615	61605668	1841991	0	+	0.358491	(0.33,0.36]	chr2	175060	1	EXON_SMALL	EXON_SMALL	RNU6-1145P	ENSG00000206973.1	ENST00000384246.1	snRNA	snRNA	snRNA	snRNA	0	35	2	4.33896	5.1484950000000005	5.95803	0.00182033	2.53891e-7	0.0183913	1.24442e-5
chr13	75530204	75530259	14080551	0	-	0.436364	(0.42,0.455]	chr13	1102422	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COMMD6	ENSG00000188243.14	ENST00000682242.1:ENST00000377615.7:ENST00000460675.5:ENST00000377612.8:ENST00000355801.4:ENST00000497707.5:ENST00000486516.5:ENST00000377619.9:ENST00000483290.5:ENST00000464050.5:ENST00000477377.1:ENST00000471682.1:ENST00000626103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.67981	5.1484749999999995	5.61714	5.38444e-4	4.98624e-6	0.00744072	1.54467e-4
chr15	58597058	58597157	15310672	0	-	0.434343	(0.42,0.455]	chr15	1208273	84	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.67981	5.1484749999999995	5.61714	5.38444e-4	4.98624e-6	0.00744072	1.54467e-4
chr19	11449075	11449175	17231264	0	+	0.64	(0.59,1]	chr19	1419935	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000587290.5:ENST00000590098.1:ENST00000592435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	393	2	4.9282	5.1481200000000005	5.36804	1.05087e-9	6.41473e-10	1.09638e-7	7.75384e-8
chr7	92117127	92117212	8922136	0	-	0.470588	(0.455,0.49]	chr7	680637	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1:ENST00000482924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	5.13282	5.147485	5.16215	5.04348e-5	1.20095e-8	0.00113788	9.06312e-7
chr3	127608831	127608927	3723472	0	+	0.520833	(0.49,0.53]	chr3	318258	1	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.28332	5.14747	6.01162	0.00338762	3.55916e-7	0.0288632	1.64926e-5
chr4	189474899	189474996	5273046	0	+	0.42268	(0.42,0.455]	chr4	423946	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AA4P	ENSG00000205100.2	ENST00000506915.1:ENST00000378770.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	34	2	4.80064	5.14746	5.49428	3.0479e-4	1.07978e-5	0.00472028	2.9314e-4
chr6	49605812	49605830	7729599	0	-	0.444444	(0.42,0.455]	chr6	592931	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.80064	5.14746	5.49428	3.0479e-4	1.07978e-5	0.00472028	2.9314e-4
chr8	140526148	140526248	10132104	0	-	0.43	(0.42,0.455]	chr8	760954	61	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	4.30177	5.147455000000001	5.99314	7.69083e-6	1.65844e-7	2.20857e-4	9.74137e-6
chr1	54875151	54875211	1030806	0	-	0.566667	(0.53,0.59]	chr1	107019	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.77222	5.14695	5.52168	6.67251e-4	1.48967e-5	0.00867533	3.81697e-4
chr12	113388626	113388722	13101740	0	+	0.645833	(0.59,1]	chr12	1022448	1	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	5.00945	5.146145000000001	5.28284	0.00149725	4.04404e-4	0.0159607	0.00550292
chr20	45904799	45904859	17987700	0	-	0.616667	(0.59,1]	chr20	1524201	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	5.00945	5.146145000000001	5.28284	0.00149725	4.04404e-4	0.0159607	0.00550292
chr14	75176479	75176579	14709502	0	-	0.6	(0.59,1]	chr14	1152562	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000555873.1:ENST00000555085.1:ENST00000622441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	5.03834	5.14607	5.2538	0.00108238	5.85045e-4	0.0118355	0.00793559
chr20	37518910	37519010	17962219	0	-	0.56	(0.53,0.59]	chr20	1522202	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6:ENST00000397135.1:ENST00000397134.1:ENST00000397131.1:ENST00000432507.1:ENST00000445723.5:ENST00000414080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.95233	5.145905	5.33948	3.02711e-4	4.08763e-5	0.00439897	9.64741e-4
chr3	128806371	128806452	3729194	0	+	0.555556	(0.53,0.59]	chr3	318643	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000675497.1:ENST00000674589.1:ENST00000464496.5:ENST00000485280.1:ENST00000483906.5:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.95233	5.145905	5.33948	3.02711e-4	4.08763e-5	0.00439897	9.64741e-4
chr12	54411833	54411898	13343911	0	-	0.553846	(0.53,0.59]	chr12	1049849	1	CDS	CDS:EXON_MRNA:INTRON	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.95825	5.14588	5.33351	2.87508e-4	4.35359e-5	0.00457439	0.00091744700000000005
chr4	65573844	65573941	4864489	0	+	0.536082	(0.53,0.59]	chr4	400319	5	EXON_PSEUDO	EXON_PSEUDO	RP11-408P14.1	ENSG00000243199.1	ENST00000466377.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.95825	5.14588	5.33351	2.87508e-4	4.35359e-5	0.00457439	0.00091744700000000005
chrX	39787770	39787861	19044756	0	-	0.549451	(0.53,0.59]	chrX	1618678	8	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.95825	5.14588	5.33351	2.87508e-4	4.35359e-5	0.00457439	0.00091744700000000005
chr2	96877889	96877965	2792372	0	-	0.644737	(0.59,1]	chr2	249288	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	28	2099	2	4.93927	5.14583	5.35239	3.82272e-12	1e-12	8.0167e-10	2.25522e-10
chr12	49128546	49128644	13323974	0	-	0.459184	(0.455,0.49]	chr12	1045746	6	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	954	2	4.948	5.145415	5.34283	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	74990367	74990457	6642535	0	-	0.488889	(0.455,0.49]	chr5	513196	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	CTD-2503O16.4:RPL27AP5	ENSG00000249856.1:ENSG00000182383.8	ENST00000505200.1:ENST00000469428.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	86	2	4.74533	5.145085	5.54484	4.89523e-6	3.57868e-9	1.67428e-4	3.18911e-7
chr11	119052636	119052732	12626519	0	-	0.614583	(0.59,1]	chr11	979809	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	165	2	2.58269	5.144545	7.7064	0.0067313	1.61886e-10	0.0461258	2.07034e-8
chr6	33201500	33201578	7121273	0	+	0.525641	(0.49,0.53]	chr6	547377	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	3	139	2	5.12602	5.144349999999999	5.16268	8.78496e-9	1.00955e-10	7.56677e-7	1.36994e-8
chrX	153702056	153702107	19273625	0	-	0.509804	(0.49,0.53]	chrX	1637354	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	78	2	3.80825	5.144055	6.47986	7.68944e-6	6.13551e-9	2.20857e-4	5.54301e-7
chr14	37817651	37817751	14239316	0	+	0.42	(0.39,0.42]	chr14	1114444	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC6	ENSG00000139865.16	ENST00000533625.5:ENST00000553443.5:ENST00000476979.5:ENST00000478811.6:ENST00000267368.11:ENST00000382320.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.63883	5.144005	5.64918	5.68159e-4	3.47137e-6	0.0077844	1.13687e-4
chr14	30886053	30886139	14201264	0	+	0.453488	(0.42,0.455]	chr14	1112913	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.40276	5.14392	5.88508	0.0017618	8.1674e-7	0.0180053	3.36299e-5
chr15	34489884	34489982	15205573	0	-	0.44898	(0.42,0.455]	chr15	1197044	10	EXON_PSEUDO	EXON_PSEUDO	HNRNPLP2	ENSG00000259917.1	ENST00000568980.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	38	2	4.40276	5.14392	5.88508	0.0017618	8.1674e-7	0.0180053	3.36299e-5
chr3	96350642	96350741	3612094	0	+	0.434343	(0.42,0.455]	chr3	310547	12	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	4.40276	5.14392	5.88508	0.0017618	8.1674e-7	0.0180053	3.36299e-5
chr16	21968627	21968685	15586879	0	+	0.37931	(0.36,0.39]	chr16	1235454	1	CDS	CDS:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	4.23248	5.143504999999999	6.05453	1.28371e-5	1.53427e-7	3.70041e-4	8.08703e-6
chr2	239914489	239914589	3244893	0	-	0.39	(0.36,0.39]	chr2	285963	11	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.32237	5.14344	5.96451	0.00273222	1.13061e-7	0.0237575	6.97642e-6
chr1	21861987	21862051	891065	0	-	0.65625	(0.59,1]	chr1	92442	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.7945	5.14317	5.49184	0.0031766	1.61513e-4	0.0279054	0.00265627
chr10	100526974	100527074	11663240	0	-	0.6	(0.59,1]	chr10	888950	1	CDS	CDS:UTR3:EXON_MRNA	RP11-411B6.6:NDUFB8	ENSG00000255339.6:ENSG00000166136.16	ENST00000529568.5:ENST00000527595.5:ENST00000557395.5:ENST00000528174.5:ENST00000533549.1:ENST00000299166.9:ENST00000370322.5:ENST00000370320.4:ENST00000528425.5:ENST00000466088.5:ENST00000529437.1:ENST00000531418.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.7945	5.14317	5.49184	0.0031766	1.61513e-4	0.0279054	0.00265627
chr19	35262618	35262692	17304054	0	+	0.689189	(0.59,1]	chr19	1430674	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.7945	5.14317	5.49184	0.0031766	1.61513e-4	0.0279054	0.00265627
chr1	27668300	27668375	910671	0	-	0.773333	(0.59,1]	chr1	95200	2	CDS	CDS:EXON_MRNA	IFI6	ENSG00000126709.16	ENST00000361157.11:ENST00000339145.8:ENST00000679644.1:ENST00000362020.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.82325	5.142975	5.4627	0.002381	2.43542e-4	0.0216895	0.00399705
chr6	170658827	170658927	7556973	0	+	0.56	(0.53,0.59]	chr6	576995	184	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	1	66	2	4.18373	5.142944999999999	6.10216	1.85867e-5	3.17557e-7	4.56627e-4	1.68263e-5
chr2	74462620	74462716	2742894	0	-	0.583333	(0.53,0.59]	chr2	244411	14	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	4.44255	5.142935	5.84332	3.41603e-6	1.90853e-6	1.12474e-4	7.59317e-5
chr18	46086386	46086440	17103817	0	-	0.574074	(0.53,0.59]	chr18	1404356	1	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000587902.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.93648	5.142755	6.34903	8.06385e-5	5.2841e-8	0.00167444	3.2354e-6
chr2	219222271	219222360	3191304	0	-	0.707865	(0.59,1]	chr2	280866	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ATG9A	ENSG00000284820.1:ENSG00000198925.12	ENST00000446716.5:ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000429920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.2353	5.142474999999999	6.04965	0.0165254	9.85057e-6	0.0873033	2.72926e-4
chr20	58855553	58855644	17840669	0	+	0.637363	(0.59,1]	chr20	1508766	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000371099.6:ENST00000349036.9:ENST00000423897.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.2353	5.142474999999999	6.04965	0.0165254	9.85057e-6	0.0873033	2.72926e-4
chr3	23919401	23919466	3358560	0	+	0.584615	(0.53,0.59]	chr3	294137	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	414	2	4.80698	5.14235	5.47772	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	28724167	28724263	16177308	0	+	0.510417	(0.49,0.53]	chr17	1305508	4	UTR3	UTR3:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	5.11868	5.142125	5.16557	9.66505e-5	6.36135e-5	0.00175267	0.00136069
chr9	5093748	5093845	10167538	0	+	0.371134	(0.36,0.39]	chr9	765714	23	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	4.73081	5.1420650000000006	5.55332	2.98719e-7	1.97544e-10	1.60273e-5	2.48717e-8
chr11	125618372	125618466	12194522	0	+	0.425532	(0.42,0.455]	chr11	940794	1	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	259	2	4.35796	5.141830000000001	5.9257	3.24574e-11	1e-12	5.50729e-9	2.25522e-10
chr8	128040873	128040971	9615215	0	+	0.408163	(0.39,0.42]	chr8	728683	6	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.98825	5.141635	5.29502	1.62756e-4	1.68146e-5	0.00266622	4.64895e-4
chr12	4099420	4099519	12704125	0	+	0.626263	(0.59,1]	chr12	985492	21	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	92	2	4.10656	5.14162	6.17668	6.70075e-5	7.29392e-6	0.00130461	2.3256e-4
chr11	119097272	119097297	12626619	0	-	0.64	(0.59,1]	chr11	979854	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.44671	5.14154	5.83637	0.00931497	3.04631e-5	0.0586162	6.83179e-4
chr1	11958515	11958581	45327	0	+	0.621212	(0.59,1]	chr1	5755	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000196061.5:ENST00000465920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	96	2	4.59513	5.141249999999999	5.68737	8.79466e-5	4.29216e-6	0.00178337	1.3648e-4
chr19	52617152	52617245	17620280	0	-	0.462366	(0.455,0.49]	chr19	1486814	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF83	ENSG00000167766.19	ENST00000600714.5:ENST00000601257.5:ENST00000301096.7:ENST00000536937.5:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000541777.6:ENST00000595939.5:ENST00000596930.5:ENST00000597161.5:ENST00000598536.5:ENST00000601140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	4.27906	5.140505	6.00195	8.82347e-6	1.86149e-7	2.48294e-4	1.07114e-5
chr12	104757231	104757325	13062185	0	+	0.521277	(0.49,0.53]	chr12	1017752	4	CDS	CDS:EXON_MRNA	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.60476	5.140225	6.67569	4.52633e-4	1.65563e-9	0.00642319	1.6405e-7
chr1	11957841	11957892	45319	0	+	0.54902	(0.53,0.59]	chr1	5751	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000196061.5:ENST00000429000.6:ENST00000465920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	153	2	4.04528	5.14002	6.23476	4.28524e-5	1e-12	9.98851e-4	2.25522e-10
chrX	152701211	152701304	18912168	0	+	0.505376	(0.49,0.53]	chrX	1610467	4	CDS	CDS:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000417212.5:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	5.03381	5.1398	5.24579	1.49689e-4	4.073e-5	0.0024973	9.64741e-4
chr13	48258796	48258871	13724899	0	+	0.4	(0.39,0.42]	chr13	1081339	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000650479.1:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000607866.1:ENST00000650237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	4.09419	5.139315	6.18444	2.95839e-5	7.14249e-8	7.34143e-4	4.18382e-6
chr8	100706941	100706997	9975978	0	-	0.517857	(0.49,0.53]	chr8	752666	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519848.1:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	1216	2	4.66252	5.139145	5.61577	1e-12	1e-12	2.46312e-10	2.25522e-10
chr15	73570331	73570423	15371885	0	-	0.445652	(0.42,0.455]	chr15	1214693	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.54792	5.13914	5.73036	9.66045e-4	2.37045e-6	0.0115185	8.28831e-5
chr15	72345441	72345541	15369439	0	-	0.49	(0.455,0.49]	chr15	1214416	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000565873.1:ENST00000564677.5:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000569116.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	4.22752	5.138815	6.05011	1.24055e-5	1.27868e-7	3.28918e-4	7.7505e-6
chr5	40827339	40827438	6552886	0	-	0.444444	(0.42,0.455]	chr5	507727	22	UTR3	UTR3:EXON_MRNA	RPL37	ENSG00000145592.14	ENST00000274242.10	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	4.50269	5.138605	5.77452	8.63204e-7	3.28914e-8	3.91474e-5	2.15659e-6
chr7	75981109	75981172	8342131	0	+	0.68254	(0.59,1]	chr7	636164	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	95	2	4.54833	5.1383600000000005	5.72839	7.24021e-5	5.67833e-6	0.0015254	1.72297e-4
chr9	94459891	94459987	10367795	0	+	0.354167	(0.33,0.36]	chr9	780591	6	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	4.12803	5.1379	6.14777	2.90032e-5	5.68759e-8	7.24986e-4	3.43245e-6
chr11	6614248	6614347	12249918	0	-	0.414141	(0.39,0.42]	chr11	946834	16	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	5.11564	5.13741	5.15918	9.85934e-9	9.11314e-9	8.41581e-7	7.16729e-7
chr15	78498143	78498240	15040132	0	+	0.443299	(0.42,0.455]	chr15	1183144	1	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.91213	5.13605	5.35997	1.75074e-4	2.41298e-5	0.00306313	5.6648e-4
chr2	189565517	189565599	3082440	0	-	0.439024	(0.42,0.455]	chr2	272323	3	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.91213	5.13605	5.35997	1.75074e-4	2.41298e-5	0.00306313	5.6648e-4
chr12	6968531	6968595	13188895	0	-	0.515625	(0.49,0.53]	chr12	1032808	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.79086	5.13602	5.48118	4.20783e-4	1.24248e-5	0.00611538	3.28918e-4
chr14	94060183	94060269	14775235	0	-	0.523256	(0.49,0.53]	chr14	1157290	2	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.79086	5.13602	5.48118	4.20783e-4	1.24248e-5	0.00611538	3.28918e-4
chr19	4538312	4538403	17432450	0	-	0.527473	(0.49,0.53]	chr19	1455209	4	CDS	CDS:EXON_MRNA:INTRON	CTB-50L17.14:LRG1	ENSG00000267385.1:ENSG00000171236.10	ENST00000586020.1:ENST00000306390.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.79086	5.13602	5.48118	4.20783e-4	1.24248e-5	0.00611538	3.28918e-4
chr6	143333363	143333445	7447629	0	+	0.402439	(0.39,0.42]	chr6	569888	2	CDS	CDS:EXON_MRNA	AIG1	ENSG00000146416.19	ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	5.10761	5.135540000000001	5.16347	6.48089e-5	5.12039e-5	0.00126536	0.00114668
chr3	197955749	197955773	3993008	0	+	0.416667	(0.39,0.42]	chr3	336624	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	5.00391	5.135515	5.26712	9.12714e-5	3.45202e-9	0.00182992	3.09496e-7
chr10	95237747	95237835	11629773	0	-	0.5	(0.49,0.53]	chr10	885722	3	UTR3	UTR3:EXON_MRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	4.45286	5.135445000000001	5.81803	1.08721e-6	5.18628e-8	4.73591e-5	3.19006e-6
chr20	35279565	35279656	17952414	0	-	0.549451	(0.53,0.59]	chr20	1520662	1	CDS	CDS:UTR3:EXON_MRNA	RP4-614O4.11:EIF6	ENSG00000261582.1:ENSG00000242372.9	ENST00000444717.1:ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	4.09676	5.13489	6.17302	3.14727e-5	1.98983e-7	7.72298e-4	1.01095e-5
chr9	83972843	83972907	10712916	0	-	0.390625	(0.39,0.42]	chr9	810508	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	4.1832	5.13487	6.08654	4.52427e-7	5.44086e-8	2.03369e-5	3.65504e-6
chr2	11577510	11577605	1634516	0	+	0.610526	(0.59,1]	chr2	162196	6	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	142	2	2.69477	5.134790000000001	7.57481	0.020208	4.39975e-10	0.0978331	5.06835e-8
chr8	41269952	41270051	9804975	0	-	0.484848	(0.455,0.49]	chr8	741421	41	INTRON	INTRON	SFRP1	ENSG00000104332.12	ENST00000220772.8:ENST00000379845.3	protein_coding	protein_coding	protein_coding	protein_coding	3	158	2	3.81698	5.13452	6.45206	7.1534e-6	1e-12	2.29129e-4	2.25522e-10
chr4	143876754	143876854	5695981	0	-	0.37	(0.36,0.39]	chr4	451447	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	156	2	4.9727	5.133525	5.29435	3.69398e-8	1e-12	2.61905e-6	2.25522e-10
chr15	34341967	34342067	15204805	0	-	0.54	(0.53,0.59]	chr15	1196852	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NOP10	ENSG00000182117.6	ENST00000328848.6:ENST00000557912.1	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	3.59295	5.1335	6.67405	4.77401e-6	3.84457e-9	1.64158e-4	3.39055e-7
chr12	46197918	46197989	13313534	0	-	0.394366	(0.39,0.42]	chr12	1043482	1	CDS	CDS:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000548979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	4.25446	5.133185	6.01191	2.69432e-7	2.50054e-7	1.37736e-5	1.30302e-5
chrX	48460985	48461035	19062758	0	-	0.48	(0.455,0.49]	chrX	1620391	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	97	2	4.88923	5.13314	5.37705	9.45747e-8	9.81265e-10	5.31584e-6	1.12615e-7
chrX	49323193	49323277	18694512	0	+	0.5	(0.49,0.53]	chrX	1594823	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE12J	ENSG00000224659.2	ENST00000442437.2	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.92528	5.1329650000000004	6.34065	3.34795e-6	1.98867e-8	1.10631e-4	1.52826e-6
chr20	1278056	1278155	17646619	0	+	0.464646	(0.455,0.49]	chr20	1491668	109	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	4.57352	5.1322849999999995	5.69105	2.83777e-6	1.47696e-8	9.62519e-5	1.18379e-6
chr19	10274940	10275028	17224534	0	+	0.465909	(0.455,0.49]	chr19	1418484	3	CDS	CDS:EXON_MRNA:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000588645.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	4.63051	5.131915	5.63332	4.15159e-6	6.5205e-7	1.32627e-4	3.08344e-5
chr18	31535269	31535340	16809044	0	+	0.295775	(0.29,0.33]	chr18	1386450	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.80322	5.13169	5.46016	2.14303e-4	7.10374e-6	0.00359478	2.0881e-4
chrX	37946378	37946477	18659014	0	+	0.30303	(0.29,0.33]	chrX	1591464	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP5-972B16.2:AL121578.2:SC4MOP	ENSG00000250349.3:ENSG00000259977.1:ENSG00000224339.1	ENST00000465127.1:ENST00000567273.1:ENST00000428051.1	protein_coding	protein_coding	protein_coding:lncRNA:processed_pseudogene	protein_coding:lncRNA:processed_pseudogene	0	28	2	4.80322	5.13169	5.46016	2.14303e-4	7.10374e-6	0.00359478	2.0881e-4
chr10	30338226	30338326	11436306	0	-	0.33	(0.29,0.33]	chr10	871981	8	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	5.0361	5.131615	5.22713	2.13226e-8	4.3297e-9	1.48722e-6	4.08288e-7
chr21	34096765	34096863	18104984	0	+	0.469388	(0.455,0.49]	chr21	1534981	16	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	94	2	4.26097	5.131460000000001	6.00195	1.86149e-7	1.78655e-8	1.07114e-5	1.28224e-6
chr7	29112703	29112781	8745426	0	-	0.474359	(0.455,0.49]	chr7	667303	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5:ENST00000447426.1:ENST00000488891.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	4.78612	5.131055	5.47599	7.64978e-6	2.17075e-7	2.4151e-4	1.0861e-5
chr9	87728766	87728866	10347563	0	+	0.48	(0.455,0.49]	chr9	778726	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	4.78612	5.131055	5.47599	7.64978e-6	2.17075e-7	2.4151e-4	1.0861e-5
chr1	111449541	111449581	407234	0	+	0.7	(0.59,1]	chr1	40160	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	4.34429	5.13096	5.91763	2.85329e-5	1.84713e-5	7.16403e-4	4.5469e-4
chr6	3914106	3914199	7575280	0	-	0.397849	(0.39,0.42]	chr6	578050	3	EXON_PSEUDO	EXON_PSEUDO	RP1-140K8.2	ENSG00000218472.2	ENST00000404787.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	57	2	3.85207	5.130935	6.4098	1.28587e-4	1.13257e-8	0.00241206	8.6123e-7
chr1	42766688	42766779	966644	0	-	0.769231	(0.59,1]	chr1	101785	3	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000372526.2:ENST00000492956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.86977	5.130445	5.39112	0.00246014	2.53595e-4	0.0230058	0.00381472
chr22	41074660	41074757	18518244	0	-	0.628866	(0.59,1]	chr22	1581022	6	EXON_PSEUDO	EXON_PSEUDO	ACTBP15	ENSG00000213857.3	ENST00000423293.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	46	2	4.86977	5.130445	5.39112	0.00246014	2.53595e-4	0.0230058	0.00381472
chr5	53560662	53560760	5968416	0	+	0.602041	(0.59,1]	chr5	467950	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.86977	5.130445	5.39112	0.00246014	2.53595e-4	0.0230058	0.00381472
chr19	35383316	35383408	17304919	0	+	0.543478	(0.53,0.59]	chr19	1430943	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P7	ENSG00000268222.1	ENST00000596811.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	102	2	3.90561	5.130345	6.35508	4.56032e-7	4.77539e-8	2.04658e-5	3.2714e-6
chr2	108712534	108712626	2832555	0	-	0.565217	(0.53,0.59]	chr2	252492	4	EXON_PSEUDO	EXON_PSEUDO	RPL10P5	ENSG00000235644.1	ENST00000427719.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	45	2	4.16383	5.12998	6.09613	0.00659193	3.47717e-7	0.0454205	1.62117e-5
chr4	99109399	99109499	4999958	0	+	0.54	(0.53,0.59]	chr4	407960	64	INTRON	INTRON	RP11-696N14.1	ENSG00000246090.7	ENST00000670724.1:ENST00000500358.6:ENST00000661393.1	lncRNA	lncRNA	lncRNA	lncRNA	27	1334	2	4.19288	5.12981	6.06674	3.54339e-12	1e-12	7.52918e-10	2.25522e-10
chr1	21827862	21827919	890651	0	-	0.596491	(0.59,1]	chr1	92220	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	126	2	4.17336	5.12913	6.0849	1.19649e-5	2.09509e-6	3.513e-4	7.43277e-5
chr14	100729025	100729115	14489548	0	+	0.6	(0.59,1]	chr14	1132110	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DLK1	ENSG00000185559.16	ENST00000392848.9:ENST00000341267.9:ENST00000331224.10:ENST00000556051.1	protein_coding	protein_coding	protein_coding	protein_coding	4	342	2	3.61204	5.1290949999999995	6.64615	1.29067e-5	1.30562e-12	3.71946e-4	2.85585e-10
chr6	36919577	36919639	7135704	0	+	0.5	(0.49,0.53]	chr6	549798	1	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.76099	5.128995	6.497	2.00194e-4	7.74861e-9	0.0034021	6.22462e-7
chr8	22611330	22611429	9226921	0	+	0.333333	(0.33,0.36]	chr8	706072	29	INTRON	INTRON	CCAR2	ENSG00000158941.16	ENST00000308511.8:ENST00000389279.7:ENST00000520861.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.76625	5.12859	5.49093	3.84608e-4	3.50796e-6	0.00531017	1.26658e-4
chr8	22415862	22415957	9224975	0	+	0.6	(0.59,1]	chr8	705689	2	CDS	CDS:EXON_MRNA	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000517370.1:ENST00000518348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.34487	5.127945	5.91102	0.0123678	2.06903e-5	0.0705839	4.99825e-4
chr9	121348081	121348149	10836492	0	-	0.470588	(0.455,0.49]	chr9	820992	2	CDS	CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50805	5.127305	5.74656	0.00122223	1.95355e-6	0.0135383	7.00948e-5
chr8	123019249	123019305	10055950	0	-	0.321429	(0.29,0.33]	chr8	756441	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.95005	5.1267949999999995	5.30354	9.78718e-5	1.89876e-5	0.0019344	4.64808e-4
chr8	11844535	11844633	9699201	0	-	0.397959	(0.39,0.42]	chr8	734804	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	98	2	3.05757	5.12619	7.19481	5.74553e-5	7.54108e-12	0.00127357	1.35198e-9
chr2	170752591	170752689	2205313	0	+	0.44898	(0.42,0.455]	chr2	201625	9	EXON_PSEUDO	EXON_PSEUDO	EIF2S2P4	ENSG00000128692.8	ENST00000461070.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	43	2	4.05954	5.1259049999999995	6.19227	0.00617886	8.32224e-8	0.0439741	4.76997e-6
chr11	2394126	2394192	11764947	0	+	0.621212	(0.59,1]	chr11	900164	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000493525.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000530239.1:ENST00000531840.1:ENST00000481687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	457	2	5.10411	5.125895	5.14768	3.33304e-9	4.77538e-11	3.26999e-7	7.04458e-9
chr5	654371	654468	5850979	0	+	0.505155	(0.49,0.53]	chr5	459950	8	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	38	2	4.38192	5.12575	5.86958	0.00259709	7.54524e-7	0.0229695	3.49213e-5
chrX	79361088	79361177	19130512	0	-	0.382022	(0.36,0.39]	chrX	1627049	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	4.95118	5.125705	5.30023	1.38946e-5	5.05967e-8	3.94563e-4	3.11657e-6
chr7	103515355	103515441	8963404	0	-	0.523256	(0.49,0.53]	chr7	686125	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	3.41615	5.1254100000000005	6.83467	9.74162e-5	3.95701e-10	0.00193088	4.60945e-8
chr6	149773137	149773169	7481745	0	+	0.46875	(0.455,0.49]	chr6	571774	1	CDS	CDS:UTR3:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	134	2	3.96464	5.125135	6.28563	6.27408e-5	1e-12	0.00135074	2.25522e-10
chr4	158794642	158794696	5753537	0	-	0.407407	(0.39,0.42]	chr4	454529	2	EXON_SMALL	EXON_SMALL	RNU6-128P	ENSG00000206703.1	ENST00000383976.1	snRNA	snRNA	snRNA	snRNA	0	40	2	4.14886	5.124805	6.10075	0.00415881	1.37224e-7	0.0325842	7.34618e-6
chr11	33717369	33717420	12344292	0	-	0.431373	(0.42,0.455]	chr11	954021	1	CDS	CDS:EXON_MRNA	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	5.0468	5.12474	5.20268	1.33918e-4	3.59669e-5	0.00229039	8.71318e-4
chr6	140353611	140353711	7437851	0	+	0.43	(0.42,0.455]	chr6	569496	381	INTRON	INTRON	RP3-460G2.1	ENSG00000288714.1	ENST00000684511.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	5.0468	5.12474	5.20268	1.33918e-4	3.59669e-5	0.00229039	8.71318e-4
chr11	6614645	6614686	12249922	0	-	0.560976	(0.53,0.59]	chr11	946836	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	116	2	5.02047	5.124625	5.22878	4.49833e-8	7.6943e-9	2.80849e-6	6.78974e-7
chr12	112148073	112148150	13094531	0	+	0.545455	(0.53,0.59]	chr12	1021539	1	CDS	CDS:UTR3:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7:ENST00000552890.5:ENST00000548277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.66936	5.124335	5.57931	0.00103174	1.05602e-5	0.0121443	2.89015e-4
chr1	52028577	52028630	1018143	0	-	0.471698	(0.455,0.49]	chr1	105416	1	CDS	CDS:UTR3:EXON_MRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000648686.1:ENST00000472624.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.87186	5.123975	5.37609	2.33781e-4	2.05373e-5	0.00385436	4.97369e-4
chr1	21829992	21830091	890681	0	-	0.707071	(0.59,1]	chr1	92238	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	388	2	4.94421	5.123545	5.30288	1.45538e-9	6.66117e-10	1.58246e-7	7.28393e-8
chr22	37225269	37225365	18503488	0	-	0.322917	(0.29,0.33]	chr22	1578938	1	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.62683	5.12346	6.62009	6.18968e-4	6.66423e-10	0.00822794	7.28393e-8
chr1	668694	668794	823718	0	-	0.59	(0.53,0.59]	chr1	81486	357	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	39	2	4.55274	5.123425	5.69411	0.00167999	5.01544e-6	0.0164993	1.7067e-4
chr1	632756	632853	495	0	+	0.443299	(0.42,0.455]	chr1	107	1	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	163	2	4.58916	5.12336	5.65756	9.65611e-11	6.14914e-11	1.31853e-8	9.6716e-9
chr19	54192287	54192373	17390359	0	+	0.55814	(0.53,0.59]	chr19	1447185	3	CDS	CDS:EXON_MRNA	TSEN34	ENSG00000170892.13	ENST00000455798.6:ENST00000302937.8:ENST00000429671.7:ENST00000667261.1:ENST00000496583.1:ENST00000396383.5:ENST00000665674.2:ENST00000653273.2:ENST00000396388.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.5586	5.123355	5.68811	0.00161229	5.40688e-6	0.0169168	1.64762e-4
chr5	32396626	32396718	6519321	0	-	0.608696	(0.59,1]	chr5	505001	10	INTRON	INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	2	138	2	4.51752	5.122955	5.72839	7.24021e-5	2.13872e-7	0.0015254	1.07625e-5
chr16	89346808	89346907	16077784	0	-	0.292929	(0.29,0.33]	chr16	1292197	31	INTRON	INTRON	ANKRD11:GS2-740I5.1	ENSG00000167522.16:ENSG00000288715.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000683497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.92772	5.1227350000000005	5.31775	1.56621e-4	1.06766e-5	0.00259991	3.17854e-4
chr5	66038982	66039081	6005690	0	+	0.323232	(0.29,0.33]	chr5	470465	1	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.92772	5.1227350000000005	5.31775	1.56621e-4	1.06766e-5	0.00259991	3.17854e-4
chr7	32741646	32741746	8210584	0	+	0.31	(0.29,0.33]	chr7	626516	82	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	26	2	4.92772	5.1227350000000005	5.31775	1.56621e-4	1.06766e-5	0.00259991	3.17854e-4
chr20	450662	450762	17644862	0	+	0.43	(0.42,0.455]	chr20	1491460	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206797.1	ENST00000384070.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	0	32	2	4.9566	5.122215	5.28783	2.10615e-4	2.17539e-5	0.00327655	5.73422e-4
chr19	35267465	35267555	17304112	0	+	0.7	(0.59,1]	chr19	1430698	5	CDS	CDS:EXON_MRNA	LSR	ENSG00000105699.17	ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.44671	5.1221250000000005	5.79754	0.00931497	3.712e-5	0.0586162	8.06532e-4
chr12	51056359	51056430	12876128	0	+	0.507042	(0.49,0.53]	chr12	1000583	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000550929.5:ENST00000550446.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000552433.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.68499	5.12202	6.55905	2.9991e-4	4.57009e-9	0.00472028	3.94074e-7
chr11	78113937	78113989	12477857	0	-	0.442308	(0.42,0.455]	chr11	970738	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	5.11218	5.121935000000001	5.13169	8.60227e-5	6.01815e-5	0.00160731	0.00130886
chr12	110342374	110342448	13085866	0	+	0.527027	(0.49,0.53]	chr12	1020532	3	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	83	2	3.35841	5.1212	6.88399	1.37225e-4	2.51067e-10	0.00253405	3.07559e-8
chr2	43888401	43888500	2622914	0	-	0.343434	(0.33,0.36]	chr2	236084	23	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.83198	5.1207650000000005	5.40955	1.88689e-4	1.14206e-5	0.0032588	3.08108e-4
chr19	43607321	43607419	17579668	0	-	0.520408	(0.49,0.53]	chr19	1478892	2	UTR3	UTR3:EXON_MRNA	ZNF428	ENSG00000131116.12	ENST00000300811.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.84744	5.120715	5.39399	3.70203e-4	1.71804e-5	0.00515475	4.72485e-4
chr21	34095395	34095493	18104970	0	+	0.510204	(0.49,0.53]	chr21	1534981	2	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	34	2	4.89405	5.120475	5.3469	2.57983e-4	2.75121e-5	0.00419998	6.30607e-4
chr4	47706899	47706987	4824055	0	+	0.556818	(0.53,0.59]	chr4	397622	7	EXON_PSEUDO	EXON_PSEUDO	RP11-100N21.1	ENSG00000242262.1	ENST00000487352.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	84	2	3.92332	5.119415	6.31551	3.68546e-6	6.83735e-8	1.31185e-4	4.03413e-6
chr1	161356676	161356758	500046	0	+	0.487805	(0.455,0.49]	chr1	54175	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	3.91579	5.119165	6.32254	3.36217e-7	2.62373e-8	1.77027e-5	1.77777e-6
chr9	111244267	111244367	10797693	0	-	0.3	(0.29,0.33]	chr9	817687	1043	INTRON	INTRON	RP11-202G18.1	ENSG00000227531.1	ENST00000426204.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.81618	5.11913	5.42208	2.74489e-4	5.31413e-6	0.00406677	1.7831e-4
chr4	22727566	22727662	5356440	0	-	0.4375	(0.42,0.455]	chr4	429643	3	EXON_PSEUDO	EXON_PSEUDO	CDC42P6	ENSG00000237350.1	ENST00000421246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.40276	5.119045	5.83533	0.0017618	1.15767e-6	0.0180053	4.52486e-5
chr4	39973284	39973363	5386177	0	-	0.481013	(0.455,0.49]	chr4	431807	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PDS5A:RP11-333E13.2	ENSG00000121892.15:ENSG00000250568.1	ENST00000303538.13:ENST00000503396.5:ENST00000510152.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	7	258	2	4.70084	5.118410000000001	5.53598	1.9908e-11	1e-12	3.52991e-9	2.25522e-10
chr1	171579353	171579409	537495	0	+	0.392857	(0.39,0.42]	chr1	57708	1	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	3.86141	5.118005	6.3746	5.68955e-7	1.52204e-8	2.74392e-5	1.11346e-6
chr7	100607721	100607807	8428016	0	+	0.581395	(0.53,0.59]	chr7	643274	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000486440.5:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	5.04298	5.117929999999999	5.19288	1.91383e-4	9.22873e-5	0.0032874	0.0016906
chrX	123629147	123629244	19198447	0	-	0.28866000000000003	[0,0.29]	chrX	1632541	8	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.07045	5.117515	5.16458	5.08054e-5	3.97867e-5	0.00114377	8.56316e-4
chr13	113322281	113322321	13908406	0	+	0.575	(0.53,0.59]	chr13	1090359	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1:ENST00000471046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.77222	5.11693	5.46164	6.67251e-4	2.11519e-5	0.00867533	5.06522e-4
chr5	80299677	80299773	6666220	0	-	0.572917	(0.53,0.59]	chr5	514637	1	EXON_PSEUDO	EXON_PSEUDO	CTC-512J14.7	ENSG00000184188.6	ENST00000507366.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.77222	5.11693	5.46164	6.67251e-4	2.11519e-5	0.00867533	5.06522e-4
chr1	205351246	205351321	675755	0	+	0.386667	(0.36,0.39]	chr1	68286	1	EXON_PSEUDO	EXON_PSEUDO	SNRPGP10	ENSG00000235363.1	ENST00000432323.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	50	2	4.26916	5.116835	5.96451	9.09682e-6	1.13061e-7	2.53877e-4	6.97642e-6
chr13	99559448	99559534	13865622	0	+	0.360465	(0.36,0.39]	chr13	1087231	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	4.26916	5.116835	5.96451	9.09682e-6	1.13061e-7	2.53877e-4	6.97642e-6
chrX	104128709	104128809	19158139	0	-	0.42	(0.39,0.42]	chrX	1629579	231	INTRON	INTRON	SLC25A53	ENSG00000269743.3	ENST00000594199.3	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	4.62228	5.1159300000000005	5.60958	2.11003e-6	7.53778e-7	8.25026e-5	3.14118e-5
chr2	201480075	201480175	2312905	0	+	0.4	(0.39,0.42]	chr2	209412	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	STRADB	ENSG00000082146.13	ENST00000194530.8:ENST00000392249.6:ENST00000415688.1:ENST00000466770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.77106	5.11585	5.46064	3.03764e-4	1.15573e-5	0.00472028	3.09736e-4
chr22	41674732	41674832	18520233	0	-	0.4	(0.39,0.42]	chr22	1581350	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	135	2	4.47615	5.115795	5.75544	2.31934e-9	1.51246e-11	2.19219e-7	2.74467e-9
chr3	184245277	184245358	4622953	0	-	0.518519	(0.49,0.53]	chr3	381732	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000423996.5:ENST00000477959.1:ENST00000461415.5:ENST00000488976.5:ENST00000482048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	4.81593	5.115765	5.4156	1.84143e-5	1.6567e-7	4.53637e-4	9.74137e-6
chr6	7289571	7289668	7586889	0	-	0.340206	(0.33,0.36]	chr6	578694	18	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	232	2	5.0908	5.115634999999999	5.14047	1.13376e-12	1e-12	2.76326e-10	2.25522e-10
chr11	62639626	62639678	12409868	0	-	0.403846	(0.39,0.42]	chr11	961325	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	4.3053	5.1154399999999995	5.92558	7.30538e-6	2.00458e-7	2.13219e-4	1.13771e-5
chr9	128808369	128808467	10481479	0	+	0.55102	(0.53,0.59]	chr9	790856	6	UTR3	UTR3:EXON_MRNA	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding	3	153	2	4.42075	5.115195	5.80964	8.32123e-8	3.79275e-11	4.76997e-6	6.33012e-9
chr2	32220372	32220452	1711930	0	+	0.375	(0.36,0.39]	chr2	167925	3	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.42503	5.114985	5.80494	0.00133228	9.78955e-7	0.0144372	3.91899e-5
chr3	73004840	73004940	3556080	0	+	0.45	(0.42,0.455]	chr3	309000	63	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.55396	5.1144099999999995	5.67486	3.42598e-6	1.1523e-6	1.12506e-4	4.9483e-5
chr8	140530144	140530244	10132144	0	-	0.48	(0.455,0.49]	chr8	760954	101	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	4.55476	5.114075	5.67339	2.05982e-6	1.27404e-6	8.10246e-5	4.90986e-5
chr4	16387118	16387218	5329920	0	-	0.54	(0.53,0.59]	chr4	428895	254	INTRON	INTRON	ZEB2P1	ENSG00000249506.3	ENST00000572816.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	40	2	4.43863	5.11395	5.78927	0.00254763	2.83401e-6	0.0233955	9.62519e-5
chr11	65132731	65132780	12421695	0	-	0.55102	(0.53,0.59]	chr11	963767	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1:ENST00000525874.1:ENST00000533685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	4.76025	5.113935	5.46762	1.97761e-5	3.4642e-7	5.29643e-4	1.61837e-5
chr12	49496239	49496332	12867336	0	+	0.419355	(0.39,0.42]	chr12	999278	9	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5:ENST00000552655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.63883	5.11393	5.58903	5.68159e-4	5.14263e-6	0.0077844	1.58468e-4
chr14	30885967	30886053	14201263	0	+	0.406977	(0.39,0.42]	chr14	1112913	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.63883	5.11393	5.58903	5.68159e-4	5.14263e-6	0.0077844	1.58468e-4
chr11	18489645	18489744	12302626	0	-	0.444444	(0.42,0.455]	chr11	951481	52	INTRON	INTRON	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000543054.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	5.01562	5.113745	5.21187	1.01971e-4	5.5797e-5	0.0019861	0.00112719
chr6	166929587	166929687	8083226	0	-	0.57	(0.53,0.59]	chr6	616941	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	4.64132	5.11331	5.5853	9.83355e-6	1.29785e-8	2.98194e-4	9.70419e-7
chr11	44114242	44114301	11926268	0	+	0.508475	(0.49,0.53]	chr11	911534	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000529186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	4.90469	5.11324	5.32179	2.63311e-5	8.91237e-8	6.73425e-4	5.05835e-6
chr1	38709126	38709224	144540	0	+	0.581633	(0.53,0.59]	chr1	18021	3	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	80	2	3.30943	5.1131899999999995	6.91695	0.0018255	4.71582e-10	0.0183913	5.38983e-8
chr9	110251357	110251409	10792366	0	-	0.480769	(0.455,0.49]	chr9	817307	1	CDS	CDS:EXON_MRNA	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	4.75005	5.113020000000001	5.47599	7.64978e-6	2.8854e-7	2.4151e-4	1.38392e-5
chr1	99719533	99719590	1197452	0	-	0.45614	(0.455,0.49]	chr1	116872	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	5.06282	5.1124849999999995	5.16215	1.16789e-4	5.04348e-5	0.0020505	0.00113788
chr17	17816543	17816630	16465719	0	-	0.712644	(0.59,1]	chr17	1344707	2	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000471445.5:ENST00000469356.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	120	2	3.88055	5.112465	6.34438	1.27063e-5	2.85814e-6	3.34717e-4	1.07102e-4
chr3	13341815	13341883	4046461	0	-	0.573529	(0.53,0.59]	chr3	339609	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	5	309	2	4.20024	5.11221	6.02418	4.7401e-7	1e-12	2.35621e-5	2.25522e-10
chr10	97749473	97749529	11214516	0	+	0.535714	(0.53,0.59]	chr10	853251	1	CDS	CDS:EXON_MRNA	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.95233	5.1116	5.27087	3.02711e-4	5.9416e-5	0.00439897	0.00130151
chr11	95799267	95799367	12086240	0	+	0.44	(0.42,0.455]	chr11	931473	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000538095.1:ENST00000544522.5:ENST00000539855.5:ENST00000541365.5:ENST00000535497.1:ENST00000540830.5:ENST00000538658.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.54792	5.11139	5.67486	9.66045e-4	3.42598e-6	0.0115185	1.12506e-4
chr18	9401322	9401422	16753345	0	+	0.44	(0.42,0.455]	chr18	1381535	19	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.54792	5.11139	5.67486	9.66045e-4	3.42598e-6	0.0115185	1.12506e-4
chr19	39433204	39433272	17563221	0	-	0.338235	(0.33,0.36]	chr19	1475624	2	UTR3	UTR3:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000602153.5:ENST00000595386.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	4.6856	5.11134	5.53708	3.92435e-4	2.0019e-10	0.00583618	2.51594e-8
chr7	130135506	130135605	8529080	0	+	0.444444	(0.42,0.455]	chr7	651128	49	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.24133	5.110525	5.97972	0.00326918	4.13864e-7	0.0282494	1.88179e-5
chr19	14406699	14406766	17242509	0	+	0.522388	(0.49,0.53]	chr19	1421857	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.55929	5.110505	5.66172	0.00116196	3.99372e-6	0.0130851	1.28691e-4
chr12	46197719	46197817	13313530	0	-	0.336735	(0.33,0.36]	chr12	1043478	1	CDS	CDS:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000548979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	3.74615	5.110475	6.4748	2.47889e-7	9.03216e-10	1.21877e-5	1.04985e-7
chr16	15602403	15602503	15865142	0	-	0.38	(0.36,0.39]	chr16	1267899	2	SS3_PROX	SS3_PROX:INTRON	MARF1	ENSG00000166783.22	ENST00000396368.8:ENST00000540441.6:ENST00000548025.5:ENST00000551742.5:ENST00000552553.5:ENST00000547936.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	5.0994	5.109970000000001	5.12054	7.15553e-5	4.68763e-5	0.00137393	0.00107286
chr7	130184183	130184255	9063328	0	-	0.375	(0.36,0.39]	chr7	692173	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.58747	5.10945	5.63143	6.55819e-4	3.24005e-6	0.00860229	1.07746e-4
chr12	104031160	104031256	13057245	0	+	0.489583	(0.455,0.49]	chr12	1017437	5	EXON_PSEUDO	EXON_PSEUDO	RP11-490H24.5	ENSG00000216285.5	ENST00000547454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	55	2	4.22226	5.109120000000001	5.99598	1.23185e-5	3.33072e-7	3.58356e-4	1.56608e-5
chr2	71376320	71376419	1881701	0	+	0.353535	(0.33,0.36]	chr2	177895	1	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.96487	5.108975	5.25308	9.26851e-5	2.94355e-5	0.00185187	6.67979e-4
chr2	26195091	26195161	2565681	0	-	0.485714	(0.455,0.49]	chr2	230549	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	4.12122	5.10897	6.09672	7.48316e-7	8.84067e-8	3.12066e-5	5.61099e-6
chr19	12876271	12876363	17471741	0	-	0.576087	(0.53,0.59]	chr19	1463249	3	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1:ENST00000592506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.49159	5.1088	6.72601	6.29049e-5	2.47831e-9	0.00135218	2.32242e-7
chr12	123295607	123295707	13595074	0	-	0.49	(0.455,0.49]	chr12	1070977	66	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	4	174	2	4.54521	5.1085899999999995	5.67197	1.91271e-8	1e-12	1.48078e-6	2.25522e-10
chr10	62813790	62813887	11530294	0	-	0.649485	(0.59,1]	chr10	878395	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EGR2	ENSG00000122877.17	ENST00000242480.4:ENST00000639815.1:ENST00000411732.3:ENST00000439032.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.63106	5.108525	5.58599	0.00537945	1.04372e-4	0.0406564	0.00186841
chr21	44806012	44806111	18277270	0	-	0.333333	(0.33,0.36]	chr21	1550219	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	4.72598	5.108454999999999	5.49093	3.50796e-6	3.063e-7	1.26658e-4	1.45748e-5
chr12	51243637	51243735	12876238	0	+	0.357143	(0.33,0.36]	chr12	1000617	11	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	4.33969	5.10764	5.87559	1.95052e-7	1.17184e-7	1.11133e-5	6.40705e-6
chr1	21839460	21839550	890796	0	-	0.666667	(0.59,1]	chr1	92298	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	293	2	4.74876	5.1075099999999996	5.46626	1.90145e-8	4.19378e-9	1.4737e-6	3.6593e-7
chr12	57720461	57720518	12904344	0	+	0.45614	(0.455,0.49]	chr12	1005904	2	CDS	CDS:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.89235	5.107445	6.32254	9.60445e-5	2.62373e-8	0.00190731	1.77777e-6
chr4	87892829	87892928	4942244	0	+	0.454545	(0.42,0.455]	chr4	406011	11	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	180	2	3.96314	5.10685	6.25056	9.85418e-9	1e-12	7.68085e-7	2.46312e-10
chr8	37744644	37744718	9289932	0	+	0.472973	(0.455,0.49]	chr8	710341	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000523887.5:ENST00000519638.3:ENST00000648919.1:ENST00000521993.3:ENST00000518586.5:ENST00000335171.10:ENST00000521644.5:ENST00000523107.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.63978	5.1064799999999995	5.57318	6.94032e-4	6.11867e-6	0.00876781	1.83393e-4
chr8	89924967	89925060	9473110	0	+	0.397849	(0.39,0.42]	chr8	720686	6	CDS	CDS:EXON_MRNA	OSGIN2	ENSG00000164823.11	ENST00000647849.1:ENST00000297438.6:ENST00000451899.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.89218	5.105935	5.31969	1.6518e-4	2.68682e-5	0.0029267300000000002	6.19143e-4
chr4	98880540	98880637	5547678	0	-	0.329897	(0.29,0.33]	chr4	443076	14	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	5.0833	5.105565	5.12783	5.31593e-5	4.57622e-5	0.00108035	0.00105479
chr19	11437875	11437971	17231140	0	+	0.5625	(0.53,0.59]	chr19	1419884	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000589126.5:ENST00000588269.1:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	429	2	4.30226	5.105555000000001	5.90885	5.4609e-10	1e-12	6.73736e-8	2.25522e-10
chr11	88294427	88294508	12533067	0	-	0.530864	(0.53,0.59]	chr11	972520	5	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	86	2	3.53663	5.10534	6.67405	4.77731e-5	3.84457e-9	0.00109049	3.39055e-7
chr3	128637915	128638010	4441492	0	-	0.463158	(0.455,0.49]	chr3	369027	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000479113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	114	2	4.28007	5.105145	5.93022	8.3464e-6	5.5731e-12	2.58924e-4	1.03724e-9
chr3	149035596	149035694	4509114	0	-	0.44898	(0.42,0.455]	chr3	374159	2	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1:ENST00000472830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	155	2	4.97714	5.10461	5.23208	4.14681e-10	1.87681e-11	4.81287e-8	3.3363e-9
chr6	136589582	136589681	7985089	0	-	0.444444	(0.42,0.455]	chr6	610547	52	INTRON	INTRON	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.31161	5.104445	6.89728	0.00186138	1.93794e-10	0.018635	2.44791e-8
chr1	147179423	147179522	453655	0	+	0.414141	(0.39,0.42]	chr1	45094	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-337C18.10:PDIA3P1	ENSG00000237188.5:ENSG00000180867.11	ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	1	68	2	3.32811	5.10424	6.88037	0.00182819	1.65816e-10	0.0183913	2.11828e-8
chr12	122133347	122133434	13123046	0	+	0.678161	(0.59,1]	chr12	1024807	1	CDS	CDS:UTR5:EXON_MRNA	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000539861.5:ENST00000538061.1:ENST00000538698.5:ENST00000377037.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.86977	5.103885	5.338	0.00246014	3.196e-4	0.0230058	0.00457916
chr19	44874329	44874403	17349337	0	+	0.662162	(0.59,1]	chr19	1439147	1	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1:ENST00000587386.1:ENST00000585601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.86977	5.103885	5.338	0.00246014	3.196e-4	0.0230058	0.00457916
chr1	161589733	161589819	501262	0	+	0.593023	(0.59,1]	chr1	54297	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000496692.6:ENST00000466542.6:ENST00000465075.6:ENST00000473530.6:ENST00000611236.1:ENST00000473712.6:ENST00000482226.2	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:retained_intron:lncRNA:processed_transcript:polymorphic_pseudogene	0	45	2	4.89857	5.10375	5.30893	0.00182139	4.67312e-4	0.0176016	0.00661038
chr2	219224292	219224385	3191331	0	-	0.634409	(0.59,1]	chr2	280883	3	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.7151	5.10347	5.49184	0.00412279	1.61513e-4	0.0325842	0.00265627
chr14	94079121	94079219	14775431	0	-	0.489796	(0.455,0.49]	chr14	1157311	2	CDS	CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.76048	5.102650000000001	5.44482	3.99985e-4	1.36044e-5	0.00588767	3.54469e-4
chr3	133815589	133815657	3752462	0	+	0.470588	(0.455,0.49]	chr3	321394	1	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.76048	5.102650000000001	5.44482	3.99985e-4	1.36044e-5	0.00588767	3.54469e-4
chrX	48528233	48528295	18691856	0	+	0.580645	(0.53,0.59]	chrX	1594148	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	149	2	4.56882	5.102245	5.63567	2.36766e-8	2.06825e-10	1.777e-6	2.59186e-8
chr12	67269357	67269447	12933685	0	+	0.644444	(0.59,1]	chr12	1008038	1	UTR5	UTR5:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000541058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.44671	5.102175000000001	5.75764	0.00931497	4.53637e-5	0.0586162	9.4617e-4
chr12	7922820	7922888	13193192	0	-	0.617647	(0.59,1]	chr12	1033489	1	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	142	2	3.53089	5.102095	6.6733	1.7784e-5	4.04492e-7	4.43546e-4	2.05866e-5
chr2	230878983	230879071	2422259	0	+	0.488636	(0.455,0.49]	chr2	218129	4	UTR3	UTR3:EXON_MRNA	ITM2C	ENSG00000135916.16	ENST00000326427.11:ENST00000335005.10:ENST00000326407.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.97525	5.101595	5.22794	1.38474e-4	4.80556e-5	0.00254294	9.91058e-4
chr11	44605354	44605438	11928114	0	+	0.571429	(0.53,0.59]	chr11	911694	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD82	ENSG00000085117.12	ENST00000526958.5:ENST00000342935.7:ENST00000532544.5:ENST00000529277.5:ENST00000227155.9:ENST00000525898.5:ENST00000527737.5:ENST00000525813.5:ENST00000530601.1:ENST00000530931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.86232	5.1009	5.33948	4.57805e-4	4.08763e-5	0.00608573	9.64741e-4
chr17	82750416	82750495	16385349	0	+	0.582278	(0.53,0.59]	chr17	1332863	1	CDS	CDS:EXON_MRNA	FN3K	ENSG00000167363.14	ENST00000300784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.86232	5.1009	5.33948	4.57805e-4	4.08763e-5	0.00608573	9.64741e-4
chr7	103497872	103497926	8963223	0	-	0.537037	(0.53,0.59]	chr7	686101	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.86823	5.1008700000000005	5.33351	4.35895e-4	4.35359e-5	0.00623608	0.00091744700000000005
chr20	36653129	36653226	17957209	0	-	0.474227	(0.455,0.49]	chr20	1521497	15	UTR3	UTR3:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	4.95409	5.100664999999999	5.24724	3.09759e-5	5.5347e-8	7.62166e-4	3.37102e-6
chr12	7924409	7924460	13193210	0	-	0.411765	(0.39,0.42]	chr12	1033495	1	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.93737	5.100455	6.26354	7.80292e-5	3.79414e-8	0.00162998	2.43463e-6
chr12	93083497	93083597	13470826	0	-	0.56	(0.53,0.59]	chr12	1059323	785	INTRON	INTRON	RP11-511B23.2	ENSG00000257322.6	ENST00000550324.5:ENST00000549930.1	lncRNA	lncRNA	lncRNA	lncRNA	4	177	2	4.66151	5.100239999999999	5.53897	6.37612e-10	4.87961e-10	7.00182e-8	6.11776e-8
chr1	12578796	12578876	862197	0	-	0.625	(0.59,1]	chr1	87515	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	DHRS3:MIR6730	ENSG00000162496.9:ENSG00000276830.1	ENST00000616661.5:ENST00000464917.5:ENST00000622213.1:ENST00000430996.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	145	2	3.77884	5.100145	6.42145	3.84818e-6	1.83275e-6	1.24901e-4	7.37353e-5
chr7	149003972	149004051	9124734	0	-	0.582278	(0.53,0.59]	chr7	696954	2	CDS	CDS:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	4.24099	5.100099999999999	5.95921	1.28258e-5	9.20231e-12	3.70041e-4	1.61333e-9
chr2	63604695	63604783	1850116	0	+	0.397727	(0.39,0.42]	chr2	175428	1	CDS	CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	4.69349	5.099835	5.50618	3.85767e-7	3.66136e-10	1.98905e-5	4.3024e-8
chr12	7921512	7921571	13193178	0	-	0.508475	(0.49,0.53]	chr12	1033483	1	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1:ENST00000479059.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	112	2	4.45323	5.099399999999999	5.74557	2.6067e-6	4.33673e-11	9.88864e-5	6.47837e-9
chr12	56143016	56143082	12898421	0	+	0.515152	(0.49,0.53]	chr12	1004307	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000548142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.4279	5.099270000000001	5.77064	0.00196987	1.94063e-6	0.0193972	6.9799e-5
chr3	156542412	156542511	4538656	0	-	0.484848	(0.455,0.49]	chr3	376076	30	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	4.19652	5.099235	6.00195	1.86149e-7	4.57006e-9	1.07114e-5	3.94074e-7
chr11	119054983	119055060	12626545	0	-	0.467532	(0.455,0.49]	chr11	979819	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5:ENST00000534233.5:ENST00000526656.5:ENST00000531968.5:ENST00000532421.5:ENST00000533381.5:ENST00000527038.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	200	2	3.33811	5.099095	6.86008	2.75808e-5	1e-12	6.9956e-4	2.25522e-10
chr18	26479749	26479848	17046563	0	-	0.484848	(0.455,0.49]	chr18	1401300	27	INTRON	INTRON	KCTD1	ENSG00000134504.14	ENST00000579973.5:ENST00000580059.7:ENST00000317932.11:ENST00000417602.5:ENST00000408011.7:ENST00000580191.5:ENST00000580638.5:ENST00000578973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.20189	5.098935	5.99598	0.00397662	3.33072e-7	0.0322851	1.56608e-5
chr3	197850769	197850861	4672311	0	-	0.467391	(0.455,0.49]	chr3	386806	5	EXON_PSEUDO	EXON_PSEUDO	AC144530.1	ENSG00000234742.1	ENST00000452862.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.20189	5.098935	5.99598	0.00397662	3.33072e-7	0.0322851	1.56608e-5
chr14	47201015	47201104	14607529	0	-	0.629214	(0.59,1]	chr14	1143906	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	MDGA2:RPL13AP2	ENSG00000139915.21:ENSG00000244053.1	ENST00000426342.7:ENST00000399232.8:ENST00000357362.7:ENST00000557238.5:ENST00000482848.7:ENST00000488281.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	91	2	3.93234	5.098265	6.26419	1.81878e-4	2.94176e-6	0.00317002	9.91141e-5
chr19	18279774	18279855	17499036	0	-	0.395062	(0.39,0.42]	chr19	1468044	2	UTR3	UTR3:EXON_MRNA	JUND	ENSG00000130522.6	ENST00000252818.5	protein_coding	protein_coding	protein_coding	protein_coding	27	804	2	4.87403	5.097300000000001	5.32057	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	654274	654371	5850978	0	+	0.587629	(0.53,0.59]	chr5	459950	7	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	38	2	4.55274	5.096735	5.64073	0.00167999	7.00135e-6	0.0164993	2.25852e-4
chr17	28556826	28556899	16485728	0	-	0.575342	(0.53,0.59]	chr17	1347692	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5:ENST00000484580.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.5586	5.09667	5.63474	0.00161229	7.53339e-6	0.0169168	2.17987e-4
chr4	109463086	109463179	5039095	0	+	0.548387	(0.53,0.59]	chr4	409917	3	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5586	5.09667	5.63474	0.00161229	7.53339e-6	0.0169168	2.17987e-4
chr9	109033403	109033501	10787903	0	-	0.55102	(0.53,0.59]	chr9	816807	2	CDS	CDS:UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000472207.5:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.5586	5.09667	5.63474	0.00161229	7.53339e-6	0.0169168	2.17987e-4
chrX	38805398	38805498	18666841	0	+	0.57	(0.53,0.59]	chrX	1591778	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MID1IP1	ENSG00000165175.16	ENST00000614558.2:ENST00000457894.5:ENST00000378474.3:ENST00000336949.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5586	5.09667	5.63474	0.00161229	7.53339e-6	0.0169168	2.17987e-4
chrX	48904863	48904963	19063520	0	-	0.56	(0.53,0.59]	chrX	1620557	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.5586	5.09667	5.63474	0.00161229	7.53339e-6	0.0169168	2.17987e-4
chr6	113946077	113946148	7902987	0	-	0.380282	(0.36,0.39]	chr6	605409	2	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000520746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.98743	5.096495	5.20556	8.82225e-5	4.46552e-5	0.00178337	9.34801e-4
chr5	126822832	126822885	6202710	0	+	0.396226	(0.39,0.42]	chr5	483215	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.98825	5.096299999999999	5.20435	1.62756e-4	2.91423e-5	0.00266622	7.26551e-4
chr4	16256472	16256555	5329653	0	-	0.578313	(0.53,0.59]	chr4	428891	3	EXON_PSEUDO	EXON_PSEUDO	RPS21P4	ENSG00000242358.1	ENST00000487122.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	69	2	4.85231	5.0958950000000005	5.33948	4.08763e-5	1.71119e-7	9.64741e-4	8.87341e-6
chr6	32168791	32168888	7664647	0	-	0.515464	(0.49,0.53]	chr6	586094	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	4.42663	5.095595	5.76456	1.57714e-6	6.48162e-8	6.4504e-5	3.85234e-6
chr6	26043376	26043466	7646940	0	-	0.588889	(0.53,0.59]	chr6	582498	1	CDS	CDS:EXON_MRNA	H2BC3	ENSG00000276410.4	ENST00000615966.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66936	5.0955200000000005	5.52168	0.00103174	1.48967e-5	0.0121443	3.81697e-4
chr9	6835390	6835483	10173735	0	+	0.569892	(0.53,0.59]	chr9	766316	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	KDM4C:ACTG1P14	ENSG00000107077.19:ENSG00000230581.2	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5:ENST00000446382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	37	2	4.66936	5.0955200000000005	5.52168	0.00103174	1.48967e-5	0.0121443	3.81697e-4
chr1	99717409	99717467	1197429	0	-	0.448276	(0.42,0.455]	chr1	116866	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	4.14705	5.09502	6.04299	2.1071e-5	1.1188e-7	5.06044e-4	6.92817e-6
chrX	49581103	49581187	18695144	0	+	0.511905	(0.49,0.53]	chrX	1595019	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE12H	ENSG00000224902.5	ENST00000381722.1	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	5.08338	5.09445	5.10552	2.00613e-8	1.45408e-8	1.40889e-6	1.17124e-6
chr1	632543	632643	823356	0	-	0.46	(0.455,0.49]	chr1	81483	1	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	RP11-206L10.17:ENSG00000278791	ENSG00000230021.10:ENSG00000278791.1	ENST00000419394.2:ENST00000440196.3:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000621981.1	miRNA	processed_transcript	miRNA:transcribed_processed_pseudogene	processed_transcript:primary_miRNA	11	383	2	4.96736	5.094435000000001	5.22151	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	7301396	7301484	7587017	0	-	0.465909	(0.455,0.49]	chr6	578728	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000462112.1:ENST00000488834.5:ENST00000483409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	264	2	4.84323	5.09434	5.34545	4.53478e-11	1e-12	7.38841e-9	2.25522e-10
chr12	129109628	129109725	13153732	0	+	0.515464	(0.49,0.53]	chr12	1027739	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	58	2	4.09049	5.09413	6.09777	2.9452e-5	1.87775e-7	7.32348e-4	9.63683e-6
chr22	40964046	40964117	18377967	0	+	0.507042	(0.49,0.53]	chr22	1564041	1	CDS	CDS:EXON_MRNA	RBX1	ENSG00000100387.9	ENST00000476110.1:ENST00000216225.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	4.09049	5.09413	6.09777	2.9452e-5	1.87775e-7	7.32348e-4	9.63683e-6
chr11	6616974	6617044	12249957	0	-	0.542857	(0.53,0.59]	chr11	946859	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	4.44255	5.0940650000000005	5.74558	3.61407e-6	3.41603e-6	1.29307e-4	1.12474e-4
chr1	153991565	153991575	479590	0	+	0.3	(0.29,0.33]	chr1	49571	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000392558.4:ENST00000643794.1:ENST00000493224.5:ENST00000477151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	5.08194	5.09384	5.10574	1.77073e-8	1.13854e-8	1.38368e-6	8.65016e-7
chr1	2310015	2310114	7406	0	+	0.323232	(0.29,0.33]	chr1	1667	34	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.80322	5.0936	5.38398	2.14303e-4	1.15499e-5	0.00359478	3.09736e-4
chr8	90002212	90002312	9933906	0	-	0.33	(0.29,0.33]	chr8	750091	169	INTRON	INTRON	NBN	ENSG00000104320.14	ENST00000396252.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	27	2	4.80322	5.0936	5.38398	2.14303e-4	1.15499e-5	0.00359478	3.09736e-4
chr13	29530537	29530624	13945392	0	-	0.471264	(0.455,0.49]	chr13	1094596	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.24913	5.093415	6.9377	0.00239443	1.12217e-10	0.0225356	1.5006e-8
chr18	61404944	61405031	17148123	0	-	0.425287	(0.42,0.455]	chr18	1407797	2	EXON_PSEUDO	EXON_PSEUDO	RPL30P14	ENSG00000243256.1	ENST00000482744.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	4.40276	5.09328	5.7838	0.0017618	1.6512e-6	0.0180053	6.0825e-5
chr5	177351174	177351274	6991246	0	-	0.6	(0.59,1]	chr5	534752	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	160	2	4.19932	5.0931	5.98688	2.00143e-5	2.3242e-7	5.35199e-4	1.15066e-5
chr7	135927946	135928045	9085560	0	-	0.343434	(0.33,0.36]	chr7	693646	13	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	4.57869	5.09282	5.60695	1.14009e-6	9.87317e-11	4.91686e-5	1.34705e-8
chr16	22534516	22534615	15591471	0	+	0.59596	(0.59,1]	chr16	1236299	9	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.7945	5.09281	5.39112	0.0031766	2.53595e-4	0.0279054	0.00381472
chr20	32166398	32166494	17752644	0	+	0.614583	(0.59,1]	chr20	1498541	11	UTR3	UTR3:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.7945	5.09281	5.39112	0.0031766	2.53595e-4	0.0279054	0.00381472
chr11	95067696	95067789	12082862	0	+	0.612903	(0.59,1]	chr11	931342	5	CDS	CDS:EXON_MRNA	SRSF8	ENSG00000263465.5	ENST00000587424.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.82325	5.092639999999999	5.36203	0.002381	3.74697e-4	0.0216895	0.00560631
chrX	18962296	18962396	18976917	0	-	0.39	(0.36,0.39]	chrX	1615964	75	INTRON	INTRON	PHKA2	ENSG00000044446.12	ENST00000379942.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	4.58747	5.09243	5.59739	6.55819e-4	1.2737e-10	0.00860229	1.68067e-8
chr19	54178860	54178941	17627708	0	-	0.54321	(0.53,0.59]	chr19	1488025	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5:ENST00000391754.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	107	2	4.24902	5.091939999999999	5.93486	1.0295e-6	2.66322e-8	4.52516e-5	1.80102e-6
chr1	149886449	149886540	1287108	0	-	0.56044	(0.53,0.59]	chr1	127853	2	CDS	CDS:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	9	297	2	4.43145	5.091609999999999	5.75177	6.91065e-11	6.78635e-12	9.8048e-9	1.34359e-9
chr16	11242952	11243052	15542351	0	+	0.45	(0.42,0.455]	chr16	1231051	4	EXON_PSEUDO	EXON_PSEUDO	HNRNPCP4	ENSG00000263179.1	ENST00000571636.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	53	2	4.45249	5.091425	5.73036	2.45559e-6	2.37045e-6	9.39733e-5	8.28831e-5
chr10	118933206	118933295	11716196	0	-	0.426966	(0.42,0.455]	chr10	893738	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-498J9.2:LDHAP5	ENSG00000229272.2:ENSG00000213574.2	ENST00000663084.1:ENST00000394996.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	61	2	4.89488	5.091355	5.28783	2.17539e-5	9.35766e-8	5.73422e-4	5.27504e-6
chr6	57856371	57856468	7756351	0	-	0.453608	(0.42,0.455]	chr6	595680	6	EXON_LNCRNA	EXON_LNCRNA	XXbac-BPGBPG55C20.1	ENSG00000272541.1	ENST00000607119.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.0898	5.090485	6.09117	0.00698074	7.60033e-8	0.0473262	4.89668e-6
chr1	155257284	155257335	1307291	0	-	0.54902	(0.53,0.59]	chr1	132102	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5:ENST00000465312.5:ENST00000462151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	4.4923	5.090205	5.68811	5.40688e-6	2.39218e-6	1.64762e-4	9.1799e-5
chrX	154435350	154435427	18917911	0	+	0.571429	(0.53,0.59]	chrX	1611923	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	196	2	5.00458	5.0899	5.17522	5.00256e-8	3.97893e-12	3.40358e-6	7.69926e-10
chr2	187465098	187465195	3070150	0	-	0.381443	(0.36,0.39]	chr2	271827	10	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	4	133	2	5.05366	5.089665	5.12567	1.51866e-10	5.06386e-11	1.96162e-8	8.16041e-9
chr1	35886732	35886831	138598	0	+	0.383838	(0.36,0.39]	chr1	17155	29	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	3.63747	5.08961	6.54175	3.12796e-6	6.23366e-10	1.0463e-4	7.57002e-8
chr7	56073036	56073111	8290660	0	+	0.453333	(0.42,0.455]	chr7	631538	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000483327.5:ENST00000498777.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000529457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	4.52766	5.089525	5.65139	2.06893e-6	1.58778e-6	8.11386e-5	5.89925e-5
chr12	57935865	57935964	13358808	0	-	0.535354	(0.53,0.59]	chr12	1053291	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GIHCG	ENSG00000257698.2	ENST00000659090.1:ENST00000656617.1:ENST00000655884.1:ENST00000653595.1:ENST00000668073.1:ENST00000664635.1:ENST00000667438.1:ENST00000546580.2:ENST00000551421.1:ENST00000547492.1:ENST00000655210.1:ENST00000553102.1:ENST00000660297.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	39	2	4.43863	5.0891	5.73957	0.00254763	3.90343e-6	0.0233955	1.26306e-4
chr2	119254765	119254848	2024452	0	+	0.590361	(0.59,1]	chr2	191392	2	CDS	CDS:EXON_MRNA	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.07453	5.088995000000001	5.10346	0.00117617	8.40506e-4	0.0132131	0.00981548
chr1	109327075	109327160	1219610	0	-	0.517647	(0.49,0.53]	chr1	118974	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.12263	5.088985	6.05534	0.00591451	2.57847e-7	0.0427941	1.25763e-5
chr2	32305488	32305526	1712253	0	+	0.526316	(0.49,0.53]	chr2	167960	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000437765.1:ENST00000441084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.12263	5.088985	6.05534	0.00591451	2.57847e-7	0.0427941	1.25763e-5
chr5	82278319	82278323	6673019	0	-	0.5	(0.49,0.53]	chr5	515076	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000511844.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.12263	5.088985	6.05534	0.00591451	2.57847e-7	0.0427941	1.25763e-5
chr8	100706886	100706941	9975977	0	-	0.490909	(0.49,0.53]	chr8	752666	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519848.1:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	1043	2	4.95908	5.088425	5.21777	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	71442262	71442353	12444480	0	-	0.582418	(0.53,0.59]	chr11	966999	1	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000683874.1:ENST00000526780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	226	2	4.88671	5.088065	5.28942	7.00292e-11	3.18527e-11	1.08591e-8	4.89122e-9
chr4	87374764	87374830	5518385	0	-	0.333333	(0.33,0.36]	chr4	441964	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	4.17122	5.08796	6.0047	1.72402e-5	6.70662e-8	4.33531e-4	4.38033e-6
chr19	48961717	48961798	17368065	0	+	0.45679	(0.455,0.49]	chr19	1442230	2	UTR3	UTR3:EXON_MRNA	BAX	ENSG00000087088.20	ENST00000345358.12:ENST00000293288.12:ENST00000391871.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.87186	5.087885	5.30391	2.33781e-4	3.12735e-5	0.00385436	6.97306e-4
chr20	62278372	62278470	17861079	0	+	0.459184	(0.455,0.49]	chr20	1509921	2	EXON_MRNA	EXON_MRNA:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.87186	5.087885	5.30391	2.33781e-4	3.12735e-5	0.00385436	6.97306e-4
chrX	92113619	92113712	19142677	0	-	0.483871	(0.455,0.49]	chrX	1627984	5	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	4.87186	5.087885	5.30391	2.33781e-4	3.12735e-5	0.00385436	6.97306e-4
chr1	21857334	21857385	891011	0	-	0.607843	(0.59,1]	chr1	92418	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	5.00945	5.087605	5.16576	0.00149725	6.55716e-4	0.0159607	0.0080931
chr17	44074212	44074266	16234027	0	+	0.611111	(0.59,1]	chr17	1314317	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	5.03834	5.087565	5.13679	0.00108238	9.28022e-4	0.0118355	0.0111748
chr3	39359429	39359528	3423603	0	+	0.434343	(0.42,0.455]	chr3	297918	10	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P24	ENSG00000223668.1	ENST00000451469.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.67981	5.087045	5.49428	5.38444e-4	1.07978e-5	0.00744072	2.9314e-4
chr4	143538785	143538861	5136467	0	+	0.434211	(0.42,0.455]	chr4	415877	1	CDS	CDS:EXON_MRNA	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.67981	5.087045	5.49428	5.38444e-4	1.07978e-5	0.00744072	2.9314e-4
chr14	75152087	75152143	14709255	0	-	0.464286	(0.455,0.49]	chr14	1152555	2	CDS	CDS:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000555873.1:ENST00000555085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	3.0141	5.0862549999999995	7.15841	9.3076e-4	1.29933e-11	0.0111917	2.19315e-9
chr12	34026624	34026719	12822293	0	+	0.305263	(0.29,0.33]	chr12	995601	9	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.63974	5.08613	5.53252	4.81181e-4	4.41551e-6	0.00677016	1.39924e-4
chr10	74371534	74371632	11119893	0	+	0.489796	(0.455,0.49]	chr10	846360	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADK:RPSAP6	ENSG00000156110.15:ENSG00000214629.3	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1:ENST00000417882.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	46	2	3.81275	5.08568	6.35861	0.0138827	1.95116e-8	0.0760883	1.37715e-6
chr12	54405165	54405234	13343829	0	-	0.57971	(0.53,0.59]	chr12	1049806	1	CDS	CDS:UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.77222	5.08561	5.399	6.67251e-4	3.02387e-5	0.00867533	6.78876e-4
chr12	93641012	93641107	13473455	0	-	0.547368	(0.53,0.59]	chr12	1059444	3	EXON_PSEUDO	EXON_PSEUDO	RP11-887P2.3	ENSG00000186076.5	ENST00000548270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	4.77222	5.08561	5.399	6.67251e-4	3.02387e-5	0.00867533	6.78876e-4
chr1	143905655	143905725	1261696	0	-	0.7	(0.59,1]	chr1	123677	1	CDS	CDS:EXON_MRNA	H3-2	ENSG00000273213.4	ENST00000650532.1:ENST00000609879.2:ENST00000392948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	180	2	4.99478	5.085335000000001	5.17589	3.43637e-7	1.38058e-7	1.60752e-5	8.26029e-6
chr14	22875816	22875909	14175061	0	+	0.580645	(0.53,0.59]	chr14	1110443	6	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000553002.1:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.55001	5.085075	6.62014	6.11776e-4	6.02789e-9	0.00818575	5.00481e-7
chr17	5545315	5545415	16422545	0	-	0.5	(0.49,0.53]	chr17	1338400	29	INTRON	INTRON	NLRP1	ENSG00000091592.16	ENST00000544378.6:ENST00000262467.10:ENST00000613500.4:ENST00000572272.6:ENST00000571451.6:ENST00000269280.8:ENST00000619223.4:ENST00000617618.4:ENST00000345221.7:ENST00000354411.7:ENST00000577119.5:ENST00000571307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	4.62576	5.08483	5.5439	8.44877e-6	7.32131e-7	2.39255e-4	3.41344e-5
chr3	128067052	128067151	3725158	0	+	0.575758	(0.53,0.59]	chr3	318499	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	271	2	5.02905	5.084715	5.14038	3.7821e-10	1e-12	4.89454e-8	2.25522e-10
chr7	135615990	135616065	8552999	0	+	0.506667	(0.49,0.53]	chr7	652814	2	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.89405	5.08441	5.27477	2.57983e-4	4.14521e-5	0.00419998	8.8376e-4
chr19	11447073	11447160	17231241	0	+	0.643678	(0.59,1]	chr19	1419919	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585325.5:ENST00000592445.1:ENST00000585540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	514	2	5.03239	5.084335	5.13628	3.35452e-10	8.57797e-11	4.41227e-8	1.18534e-8
chr1	8615780	8615879	850016	0	-	0.292929	(0.29,0.33]	chr1	85845	7	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.95005	5.084205	5.21836	9.78718e-5	3.15783e-5	0.0019344	7.02218e-4
chr12	57056036	57056134	13353733	0	-	0.469388	(0.455,0.49]	chr12	1052211	5	UTR3	UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	4.37693	5.08418	5.79143	4.5365e-6	8.96581e-7	1.42727e-4	4.03386e-5
chr6	52277611	52277688	7736730	0	-	0.480519	(0.455,0.49]	chr6	593735	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	4.37693	5.08418	5.79143	4.5365e-6	8.96581e-7	1.42727e-4	4.03386e-5
chr8	30353033	30353130	9253463	0	+	0.546392	(0.53,0.59]	chr8	708964	13	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	119	2	4.6032400000000004	5.08406	5.56488	1.08833e-6	3.98789e-10	4.73591e-5	4.63767e-8
chr2	27040372	27040434	1690672	0	+	0.548387	(0.53,0.59]	chr2	165364	1	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000444135.5:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	120	2	4.5672	5.083955	5.60071	1.40998e-6	2.86364e-10	5.86085e-5	3.46419e-8
chr10	100057850	100057949	11660287	0	-	0.373737	(0.36,0.39]	chr10	888328	3	INTRON	INTRON	CPN1	ENSG00000120054.12	ENST00000370418.8:ENST00000441382.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.73346	5.083805	5.43415	3.2963e-4	1.15393e-5	0.00504024	3.09736e-4
chr1	166853979	166854078	519998	0	+	0.393939	(0.39,0.42]	chr1	55860	37	UTR3	UTR3:EXON_MRNA	POGK	ENSG00000143157.12	ENST00000367876.9:ENST00000367875.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.00391	5.083690000000001	5.16347	9.12714e-5	6.48089e-5	0.00182992	0.00126536
chr12	53515342	53515441	13339502	0	-	0.393939	(0.39,0.42]	chr12	1049176	34	UTR3	UTR3:EXON_MRNA:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	5.00391	5.083690000000001	5.16347	9.12714e-5	6.48089e-5	0.00182992	0.00126536
chr2	216137156	216137225	2380025	0	+	0.405797	(0.39,0.42]	chr2	213811	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	5.00391	5.083690000000001	5.16347	9.12714e-5	6.48089e-5	0.00182992	0.00126536
chr7	103496606	103496687	8963209	0	-	0.54321	(0.53,0.59]	chr7	686095	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	4.18853	5.0835349999999995	5.97854	7.61837e-7	5.25589e-7	3.51585e-5	2.31205e-5
chr12	10507809	10507909	12732062	0	+	0.56	(0.53,0.59]	chr12	989918	2	INTRON	INTRON	EIF2S3B	ENSG00000180574.3	ENST00000322446.3	protein_coding	protein_coding	protein_coding	protein_coding	3	178	2	3.78083	5.083495	6.38616	9.87441e-6	1e-12	2.99e-4	2.25522e-10
chr19	48795243	48795334	17603659	0	-	0.648352	(0.59,1]	chr19	1483207	3	UTR3	UTR3:EXON_MRNA	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.97015	5.083315000000001	5.19648	0.00140057	7.35336e-4	0.0144327	0.00921643
chr1	161961017	161961115	503840	0	+	0.44898	(0.42,0.455]	chr1	54599	25	UTR3	UTR3:EXON_MRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000367942.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.54792	5.08253	5.61714	9.66045e-4	4.98624e-6	0.0115185	1.54467e-4
chrX	85074273	85074332	18751694	0	+	0.423729	(0.42,0.455]	chrX	1600201	1	CDS	CDS:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.54792	5.08253	5.61714	9.66045e-4	4.98624e-6	0.0115185	1.54467e-4
chr11	117615916	117616016	12619512	0	-	0.48	(0.455,0.49]	chr11	978860	40	INTRON	INTRON	DSCAML1	ENSG00000177103.15	ENST00000651296.2:ENST00000321322.6:ENST00000527706.5:ENST00000651172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.36307	5.08154	5.80001	0.00218641	1.35407e-6	0.0208941	5.16241e-5
chr7	99459146	99459204	8947117	0	-	0.482759	(0.455,0.49]	chr7	683039	1	CDS	CDS:EXON_MRNA:INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000491560.1:ENST00000488775.5:ENST00000394186.3:ENST00000481899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	285	2	4.38465	5.081519999999999	5.77839	1.0644e-10	1e-12	1.58351e-8	2.25522e-10
chr11	57552181	57552269	12395045	0	-	0.443182	(0.42,0.455]	chr11	958833	7	UTR3	UTR3:EXON_MRNA	UBE2L6	ENSG00000156587.16	ENST00000340573.8:ENST00000287156.9	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	4.79418	5.0812100000000004	5.36824	1.33083e-5	2.10099e-7	3.81624e-4	1.05955e-5
chrX	68070807	68070903	19098336	0	-	0.520833	(0.49,0.53]	chrX	1624707	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	OPHN1:PGK1P1	ENSG00000079482.14:ENSG00000228328.2	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1:ENST00000426382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	1	60	2	3.83319	5.08113	6.32907	1.34601e-4	3.09658e-8	0.00249552	2.04921e-6
chr13	29517226	29517310	13945250	0	-	0.559524	(0.53,0.59]	chr13	1094562	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	122	2	4.48151	5.08108	5.68065	2.61211e-6	1.30267e-10	8.99269e-5	1.90274e-8
chrX	48460706	48460764	19062753	0	-	0.586207	(0.53,0.59]	chrX	1620388	2	CDS	CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4:ENST00000480105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	89	2	3.28422	5.08091	6.8776	2.10061e-4	6.21674e-10	0.00327655	7.55826e-8
chr1	173741843	173741928	549504	0	+	0.505882	(0.49,0.53]	chr1	58349	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	KLHL20:RP11-360D2.2	ENSG00000076321.11:ENSG00000225591.2	ENST00000209884.5:ENST00000455497.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	62	2	4.83985	5.08082	5.32179	2.63311e-5	1.50325e-7	6.73425e-4	7.97048e-6
chr3	13327363	13327437	4046304	0	-	0.608108	(0.59,1]	chr3	339552	3	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	4.31663	5.080755	5.84488	4.10826e-5	2.15624e-5	9.68079e-4	5.14797e-4
chr5	139476361	139476454	6867210	0	-	0.580645	(0.53,0.59]	chr5	525686	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000652293.1:ENST00000651565.1:ENST00000652640.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	5.03705	5.08003	5.12301	0.00020199200000000001	1.2852e-4	0.00317801	0.00241206
chr19	49337952	49338029	17369703	0	+	0.584416	(0.53,0.59]	chr19	1442749	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000594743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	5.04298	5.080025	5.11707	1.91383e-4	1.35965e-4	0.0032874	0.00231202
chr6	30689275	30689363	7658952	0	-	0.5	(0.49,0.53]	chr6	584185	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	4.49833	5.080025	5.66172	3.99372e-6	1.88388e-6	1.28691e-4	7.53959e-5
chr2	112662863	112662925	2001919	0	+	0.580645	(0.53,0.59]	chr2	190056	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	85	2	4.27016	5.0799900000000004	5.88982	1.39814e-6	2.78714e-7	5.82056e-5	1.34066e-5
chr1	207678197	207678297	689165	0	+	0.4	(0.39,0.42]	chr1	69977	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CR1L	ENSG00000197721.17	ENST00000531844.5:ENST00000508064.7:ENST00000430248.5:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	177	2	5.02496	5.07927	5.13358	1.53443e-10	2.68641e-12	2.21188e-8	5.43012e-10
chrX	154400415	154400463	18917611	0	+	0.458333	(0.455,0.49]	chrX	1611820	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	4.58536	5.079269999999999	5.57318	6.11867e-6	9.22269e-7	1.83393e-4	4.12764e-5
chr1	161509819	161509904	500440	0	+	0.588235	(0.53,0.59]	chr1	54221	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000467525.5:ENST00000471026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	146	2	4.59982	5.07864	5.55746	1.85529e-8	4.11576e-10	1.32775e-6	5.28378e-8
chr17	44380969	44381061	16558097	0	-	0.673913	(0.59,1]	chr17	1359474	2	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000592462.5:ENST00000592226.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.74378	5.0785149999999994	5.41325	0.00312942	3.01546e-4	0.0264364	0.00472028
chr19	1037717	1037800	17190842	0	+	0.662651	(0.59,1]	chr19	1411406	2	CDS	CDS:UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000568865.3:ENST00000566695.5:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.74378	5.0785149999999994	5.41325	0.00312942	3.01546e-4	0.0264364	0.00472028
chr8	140527747	140527847	10132120	0	-	0.5	(0.49,0.53]	chr8	760954	77	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.50546	5.078375	5.65129	3.38975e-6	1.89933e-6	1.23071e-4	6.87959e-5
chr2	179739416	179739516	3050507	0	-	0.38	(0.36,0.39]	chr2	270803	794	INTRON	INTRON	ZNF385B	ENSG00000144331.20	ENST00000410066.7:ENST00000409343.5:ENST00000475539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.58747	5.0780449999999995	5.56862	6.55819e-4	4.90567e-6	0.00860229	1.526e-4
chr19	49539118	49539179	17371158	0	+	0.52459	(0.49,0.53]	chr19	1443253	1	CDS	CDS:EXON_MRNA:INTRON	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.28332	5.077615	5.87191	0.00338762	9.67449e-7	0.0288632	3.88631e-5
chr20	47654801	47654899	17809185	0	+	0.357143	(0.33,0.36]	chr20	1506125	15	UTR3	UTR3:EXON_MRNA	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	3.32604	5.077415	6.82879	7.44914e-6	2.2936e-11	2.17025e-4	4.02581e-9
chrX	77870866	77870925	19129407	0	-	0.491525	(0.49,0.53]	chrX	1626901	2	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1:ENST00000373336.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	86	2	4.69185	5.0772949999999994	5.46274	1.13094e-5	6.32597e-9	3.3464e-4	5.20277e-7
chr10	50307241	50307321	11486524	0	-	0.4875	(0.455,0.49]	chr10	876693	1	CDS	CDS:UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.75005	5.076874999999999	5.4037	1.20695e-5	2.8854e-7	3.52389e-4	1.38392e-5
chr13	113321556	113321641	13908398	0	+	0.611765	(0.59,1]	chr13	1090357	1	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	95	2	3.53648	5.07635	6.61622	0.00107706	3.47582e-7	0.0124943	1.62117e-5
chr13	29532902	29532982	13945417	0	-	0.6125	(0.59,1]	chr13	1094602	2	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.86977	5.076305	5.28284	0.00246014	4.04404e-4	0.0230058	0.00550292
chr19	10287608	10287681	17224668	0	+	0.60274	(0.59,1]	chr19	1418517	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.86977	5.076305	5.28284	0.00246014	4.04404e-4	0.0230058	0.00550292
chrX	49174874	49174964	18693793	0	+	0.5	(0.49,0.53]	chrX	1594681	3	UTR3	UTR3:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	4.13817	5.0761	6.01403	2.61944e-7	5.61303e-8	1.42854e-5	3.39862e-6
chr14	74480717	74480775	14705290	0	-	0.482759	(0.455,0.49]	chr14	1151738	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NPC2	ENSG00000119655.11	ENST00000434013.6:ENST00000541064.5:ENST00000555619.6:ENST00000238633.6:ENST00000554482.1:ENST00000553490.5:ENST00000556009.5:ENST00000557510.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.20189	5.075654999999999	5.94942	0.00397662	4.68666e-7	0.0322851	2.08717e-5
chr13	29517143	29517226	13945249	0	-	0.614458	(0.59,1]	chr13	1094562	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	3.8606	5.075609999999999	6.29062	2.2997e-4	3.87694e-6	0.00352524	1.37159e-4
chr14	22923106	22923162	14527916	0	-	0.535714	(0.53,0.59]	chr14	1138138	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.95233	5.07558	5.19883	3.02711e-4	8.7034e-5	0.00439897	0.00177086
chr19	10285114	10285187	17224643	0	+	0.575342	(0.53,0.59]	chr19	1418508	1	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.95233	5.07558	5.19883	3.02711e-4	8.7034e-5	0.00439897	0.00177086
chr6	35575540	35575638	7676297	0	-	0.479592	(0.455,0.49]	chr6	588423	21	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.63978	5.075105000000001	5.51043	6.94032e-4	9.08728e-6	0.00876781	2.53877e-4
chr16	57460715	57460806	15684370	0	+	0.516484	(0.49,0.53]	chr16	1247647	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	COQ9	ENSG00000088682.14	ENST00000262507.11:ENST00000567072.5:ENST00000567933.5:ENST00000563166.1:ENST00000569980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.68499	5.074965000000001	6.46494	2.9991e-4	1.01442e-8	0.00472028	7.85427e-7
chr12	49186631	49186731	13324035	0	-	0.55	(0.53,0.59]	chr12	1045772	1	CDS_START	CDS_START:CDS:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1:ENST00000548363.1:ENST00000550254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	124	2	4.4133	5.0745249999999995	5.73575	4.11992e-6	8.05113e-11	1.44702e-4	1.12266e-8
chr4	55607436	55607466	5433502	0	-	0.266667	[0,0.29]	chr4	434900	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	4.36183	5.074275	5.78672	0.00170062	1.1695e-11	0.01759	1.99273e-9
chr5	138188882	138188977	6860855	0	-	0.463158	(0.455,0.49]	chr5	524903	14	UTR3	UTR3:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.0204	5.073825	6.12725	0.00736097	1.23635e-7	0.0490627	6.7072e-6
chr15	42237431	42237523	15239110	0	-	0.423913	(0.42,0.455]	chr15	1200229	1	CDS	CDS:UTR3:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000566014.1:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.95538	5.073824999999999	6.19227	6.68846e-5	8.32224e-8	0.00142352	4.76997e-6
chr1	155472589	155472689	1309150	0	-	0.44	(0.42,0.455]	chr1	132422	96	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	5.01562	5.0736550000000005	5.13169	1.01971e-4	8.60227e-5	0.0019861	0.00160731
chr5	179609913	179610012	6413823	0	+	0.424242	(0.42,0.455]	chr5	499065	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393438.6:ENST00000437570.6:ENST00000508797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	5.01562	5.0736550000000005	5.13169	1.01971e-4	8.60227e-5	0.0019861	0.00160731
chr1	154378696	154378794	1302977	0	-	0.591837	(0.59,1]	chr1	131245	6	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	RP11-350G8.4:RPSAP17	ENSG00000237920.2:ENSG00000226855.1	ENST00000449634.2:ENST00000437336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	0	51	2	4.2353	5.07316	5.91102	0.0165254	2.06903e-5	0.0873033	4.99825e-4
chr19	2733303	2733394	17425552	0	-	0.615385	(0.59,1]	chr19	1453655	6	CDS	CDS:EXON_MRNA:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9:ENST00000589363.5:ENST00000589166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.2353	5.07316	5.91102	0.0165254	2.06903e-5	0.0873033	4.99825e-4
chr12	8942466	8942542	13197242	0	-	0.5	(0.49,0.53]	chr12	1033922	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1:ENST00000543704.5:ENST00000537621.1:ENST00000543258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	4.32769	5.07286	5.81803	6.54988e-6	1.08721e-6	1.94116e-4	4.73591e-5
chr1	21823667	21823719	890603	0	-	0.673077	(0.59,1]	chr1	92202	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000481644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.26354	5.072625	5.88171	0.0134233	3.41939e-5	0.0743429	8.3505e-4
chr16	12509819	12509919	15549775	0	+	0.56	(0.53,0.59]	chr16	1231322	316	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.30776	5.072535	5.8373100000000004	0.00407289	2.06883e-6	0.0324137	7.35008e-5
chr20	35655222	35655322	17955011	0	-	0.56	(0.53,0.59]	chr20	1521110	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.30776	5.072535	5.8373100000000004	0.00407289	2.06883e-6	0.0324137	7.35008e-5
chr1	27407594	27407693	908779	0	-	0.555556	(0.53,0.59]	chr1	95011	35	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	3.85631	5.071765	6.28722	6.71157e-7	8.04768e-8	2.84686e-5	5.1468e-6
chr14	52640407	52640506	14630034	0	-	0.454545	(0.42,0.455]	chr14	1145962	6	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.64877	5.071524999999999	5.49428	1.07978e-5	5.54135e-7	2.9314e-4	2.69297e-5
chr6	28863747	28863817	7652660	0	-	0.471429	(0.455,0.49]	chr6	583176	2	SS3_PROX	SS3_PROX:INTRON	LINC01623	ENSG00000225595.2	ENST00000606624.1	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	4.00069	5.071275	6.14186	5.13615e-5	6.15079e-8	0.00104999	4.07335e-6
chr10	131967734	131967833	11750436	0	-	0.333333	(0.33,0.36]	chr10	896497	14	UTR3	UTR3:EXON_MRNA	BNIP3	ENSG00000176171.11	ENST00000368636.8	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.60626	5.07075	6.53524	4.50537e-5	2.01817e-9	0.0010411	1.95043e-7
chr18	6462151	6462246	17007683	0	-	0.410526	(0.39,0.42]	chr18	1397496	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	110	2	4.50853	5.070735	5.63294	2.9478e-8	5.67607e-11	1.96491e-6	8.98922e-9
chr7	56076833	56076889	8290703	0	+	0.571429	(0.53,0.59]	chr7	631553	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000461912.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	4.04528	5.070705	6.09613	4.28524e-5	3.47717e-7	9.98851e-4	1.62117e-5
chr20	62278568	62278666	17861081	0	+	0.479592	(0.455,0.49]	chr20	1509921	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50805	5.070685	5.63332	0.00122223	4.15159e-6	0.0135383	1.32627e-4
chr9	129807275	129807363	10487065	0	+	0.477273	(0.455,0.49]	chr9	791734	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TOR1B	ENSG00000136816.16	ENST00000259339.7:ENST00000427860.1:ENST00000488169.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50805	5.070685	5.63332	0.00122223	4.15159e-6	0.0135383	1.32627e-4
chr9	137101004	137101078	10514664	0	+	0.459459	(0.455,0.49]	chr9	796983	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50805	5.070685	5.63332	0.00122223	4.15159e-6	0.0135383	1.32627e-4
chr1	55052720	55052791	203731	0	+	0.661972	(0.59,1]	chr1	26140	2	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	88	2	3.93526	5.07064	6.20602	1.599e-4	6.20993e-6	0.00263454	2.03021e-4
chr19	3362471	3362571	17201128	0	+	0.46	(0.455,0.49]	chr19	1413680	24	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	4.59599	5.070415	5.54484	4.89523e-6	9.38471e-7	1.67428e-4	3.79261e-5
chr22	31621068	31621142	18473638	0	-	0.554054	(0.53,0.59]	chr22	1576733	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PISD:MIR7109	ENSG00000241878.11:ENSG00000284082.1	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000613748.1:ENST00000422020.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	74	2	5.04298	5.0703499999999995	5.09772	1.91383e-4	2.38604e-8	0.0032874	1.64029e-6
chr12	69598019	69598071	12943539	0	+	0.442308	(0.42,0.455]	chr12	1009006	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	4.25237	5.07017	5.88797	3.72505e-7	2.68635e-7	1.92638e-5	1.30097e-5
chr1	194189654	194189752	640478	0	+	0.489796	(0.455,0.49]	chr1	64400	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-563D10.1:EEF1A1P14	ENSG00000227240.2:ENSG00000233057.1	ENST00000656143.1:ENST00000655677.1:ENST00000454538.1:ENST00000421195.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	54	2	4.0992	5.0701350000000005	6.04107	2.73975e-5	2.38066e-7	6.95757e-4	1.17461e-5
chr18	35140562	35140659	16822719	0	+	0.474227	(0.455,0.49]	chr18	1387343	3	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	4.0992	5.0701350000000005	6.04107	2.73975e-5	2.38066e-7	6.95757e-4	1.17461e-5
chr1	65618054	65618146	253492	0	+	0.271739	[0,0.29]	chr1	28871	2	CDS	CDS:EXON_MRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.58568	5.06997	6.55426	8.35785e-5	1.00771e-9	0.00171841	1.05685e-7
chr10	104259723	104259798	11236776	0	+	0.466667	(0.455,0.49]	chr10	856312	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSTO1	ENSG00000148834.13	ENST00000470554.5:ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	4.18757	5.069850000000001	5.95213	4.43488e-7	2.72823e-7	1.99826e-5	1.4763e-5
chr10	71821945	71822016	11563271	0	-	0.521127	(0.49,0.53]	chr10	879985	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000493143.1:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	574	2	4.41445	5.069615000000001	5.72478	3.38862e-12	1e-12	7.23713e-10	2.25522e-10
chr10	19747523	19747622	10954407	0	+	0.333333	(0.33,0.36]	chr10	833877	132	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000480707.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	30	2	4.52266	5.06954	5.61642	8.34989e-4	2.97369e-6	0.0102956	9.99199e-5
chr1	39004150	39004245	145753	0	+	0.378947	(0.36,0.39]	chr1	18077	2	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	3.63747	5.06951	6.50155	3.12796e-6	9.23305e-10	1.0463e-4	1.06844e-7
chr3	45689016	45689108	4150876	0	-	0.521739	(0.49,0.53]	chr3	346834	8	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LIMD1-AS1	ENSG00000230530.2	ENST00000658801.1:ENST00000429798.1:ENST00000655322.1	lncRNA	lncRNA	lncRNA	lncRNA	332	10961	2	4.69791	5.06944	5.44097	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	21352073	21352173	14521129	0	-	0.5	(0.49,0.53]	chr14	1137303	7	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.74438	5.069184999999999	5.39399	5.91752e-4	1.71804e-5	0.00743488	4.72485e-4
chr5	77785909	77786003	6050224	0	+	0.574468	(0.53,0.59]	chr5	474661	12	EXON_PSEUDO	EXON_PSEUDO	ACTBP2	ENSG00000213763.4	ENST00000515712.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	4.5586	5.068955000000001	5.57931	0.00161229	1.05602e-5	0.0169168	2.89015e-4
chr2	233396696	233396796	2437383	0	+	0.5	(0.49,0.53]	chr2	220046	44	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000447484.5:ENST00000409813.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.79086	5.06888	5.3469	4.20783e-4	2.75121e-5	0.00611538	6.30607e-4
chr2	239914789	239914889	3244896	0	-	0.38	(0.36,0.39]	chr2	285963	14	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.93381	5.06856	5.20331	1.90009e-4	2.53222e-5	0.00302753	6.51851e-4
chr11	75572583	75572683	12023396	0	+	0.49	(0.455,0.49]	chr11	927027	6	UTR3	UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000358171.8:ENST00000524558.5:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.76048	5.0682849999999995	5.37609	3.99985e-4	2.05373e-5	0.00588767	4.97369e-4
chr10	70153903	70153969	11560421	0	-	0.348485	(0.33,0.36]	chr10	879573	2	CDS	CDS:EXON_MRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000452767.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	4.83198	5.06826	5.30454	1.88689e-4	1.93761e-9	0.0032588	1.88458e-7
chr8	94511230	94511329	9960212	0	-	0.343434	(0.33,0.36]	chr8	751283	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.33896	5.068135	5.79731	0.00182033	8.38679e-7	0.0183913	3.43427e-5
chr1	219983258	219983328	1510820	0	-	0.4	(0.39,0.42]	chr1	151004	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000485821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.76141	5.068005	6.3746	2.14058e-4	1.52204e-8	0.00359478	1.11346e-6
chr5	40761277	40761377	6552480	0	-	0.31	(0.29,0.33]	chr5	507668	20	UTR3	UTR3:EXON_MRNA	PRKAA1	ENSG00000132356.11	ENST00000397128.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.81618	5.066965	5.31775	2.74489e-4	1.06766e-5	0.00406677	3.17854e-4
chr19	4538677	4538768	17432454	0	-	0.582418	(0.53,0.59]	chr19	1455209	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTB-50L17.14:LRG1	ENSG00000267385.1:ENSG00000171236.10	ENST00000586020.1:ENST00000306390.7:ENST00000586883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.86232	5.066595	5.27087	4.57805e-4	5.9416e-5	0.00608573	0.00130151
chr21	6484868	6484916	18155106	0	-	0.5625	(0.53,0.59]	chr21	1541455	1	CDS	CDS:UTR3:EXON_MRNA	U2AF1L5	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000637320.1:ENST00000639996.1:ENST00000620065.4:ENST00000636923.1:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.86232	5.066595	5.27087	4.57805e-4	5.9416e-5	0.00608573	0.00130151
chr14	77469323	77469397	14415672	0	+	0.581081	(0.53,0.59]	chr14	1126885	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AHSA1	ENSG00000100591.8	ENST00000216479.8:ENST00000555457.5:ENST00000555729.3:ENST00000556369.1:ENST00000557476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.86823	5.0665700000000005	5.26491	4.35895e-4	6.31437e-5	0.00623608	0.00124286
chr6	26021834	26021890	7100989	0	+	0.571429	(0.53,0.59]	chr6	542747	2	CDS	CDS:EXON_MRNA	H4C1	ENSG00000278637.2	ENST00000617569.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.86823	5.0665700000000005	5.26491	4.35895e-4	6.31437e-5	0.00623608	0.00124286
chr5	44813105	44813193	5961557	0	+	0.431818	(0.42,0.455]	chr5	467211	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1:ENST00000508129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.40276	5.06656	5.73036	0.0017618	2.37045e-6	0.0180053	8.28831e-5
chr5	80633934	80633992	6667430	0	-	0.431034	(0.42,0.455]	chr5	514723	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.40276	5.06656	5.73036	0.0017618	2.37045e-6	0.0180053	8.28831e-5
chr12	122207840	122207930	13588275	0	-	0.444444	(0.42,0.455]	chr12	1069997	3	UTR3	UTR3:EXON_MRNA	RP11-512M8.12:DIABLO:RP11-512M8.13	ENSG00000284934.2:ENSG00000184047.20:ENSG00000256861.1	ENST00000645606.1:ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000535844.1:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	3.70502	5.0663800000000005	6.42774	1.90816e-6	4.31262e-9	6.90654e-5	4.07413e-7
chr8	43130092	43130191	9308575	0	+	0.30303	(0.29,0.33]	chr8	712880	74	UTR3	UTR3:EXON_MRNA	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	4.67256	5.0663599999999995	5.46016	7.10374e-6	6.52913e-7	2.0881e-4	3.08543e-5
chrX	30218680	30218775	18640658	0	+	0.6	(0.59,1]	chrX	1590509	1	CDS	CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.82325	5.06609	5.30893	0.002381	4.67312e-4	0.0216895	0.00661038
chrX	119470900	119470958	18841530	0	+	0.534483	(0.53,0.59]	chrX	1605568	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9:ENST00000460013.1:ENST00000463551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	117	2	4.6032400000000004	5.06569	5.52814	1.08833e-6	5.58677e-10	4.73591e-5	6.25722e-8
chr13	29522316	29522386	13945304	0	-	0.485714	(0.455,0.49]	chr13	1094578	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.86153	5.06546	6.26939	5.21014e-6	2.14641e-8	1.60138e-4	1.62968e-6
chr12	46361012	46361110	13314306	0	-	0.387755	(0.36,0.39]	chr12	1043578	30	UTR3	UTR3:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000552703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	5.0302	5.0648	5.0994	1.15931e-4	4.68763e-5	0.00204552	0.00107286
chr19	22699518	22699601	17274971	0	+	0.385542	(0.36,0.39]	chr19	1427628	3	EXON_PSEUDO	EXON_PSEUDO	RPL34P33	ENSG00000241282.1	ENST00000486062.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	5.0302	5.0648	5.0994	1.15931e-4	4.68763e-5	0.00204552	0.00107286
chr15	64162095	64162154	15339337	0	-	0.440678	(0.42,0.455]	chr15	1210880	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680343.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2:ENST00000558492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	173	2	3.75022	5.06469	6.37916	2.39969e-7	1e-12	1.33164e-5	2.25522e-10
chr5	33162447	33162537	5926663	0	+	0.544444	(0.53,0.59]	chr5	464307	4	EXON_PSEUDO	EXON_PSEUDO	RP11-36C20.1	ENSG00000240376.1	ENST00000467270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	94	2	4.66163	5.0646249999999995	5.46762	1.97761e-5	1.08822e-8	5.29643e-4	8.34238e-7
chr20	2462635	2462698	17878939	0	-	0.68254	(0.59,1]	chr20	1512821	1	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	119	2	4.04406	5.06448	6.0849	1.19649e-5	4.72081e-6	3.513e-4	1.48019e-4
chr11	62630441	62630505	12409761	0	-	0.625	(0.59,1]	chr11	961273	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	329	2	3.89273	5.064125	6.23552	4.83304e-7	6.48863e-11	2.14743e-5	1.01369e-8
chr9	130127482	130127566	10488413	0	+	0.428571	(0.42,0.455]	chr9	791989	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1:ENST00000483935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.05954	5.0640350000000005	6.06853	0.00617886	2.14495e-7	0.0439741	1.07721e-5
chr12	49185287	49185376	13324019	0	-	0.539326	(0.53,0.59]	chr12	1045766	3	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	449	2	4.39101	5.063644999999999	5.73628	2.5507e-11	1e-12	4.01034e-9	2.46312e-10
chr1	179917745	179917844	580800	0	+	0.444444	(0.42,0.455]	chr1	60265	4	CDS	CDS:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	4.34333	5.0635650000000005	5.7838	5.37112e-6	1.6512e-6	1.79904e-4	6.0825e-5
chr19	8302776	8302844	17449496	0	-	0.588235	(0.53,0.59]	chr19	1458569	1	CDS	CDS:UTR3:EXON_MRNA	CD320	ENSG00000167775.11	ENST00000301458.10:ENST00000537716.6:ENST00000596002.5:ENST00000599573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.43279	5.06345	5.69411	0.0026472	5.01544e-6	0.0231864	1.7067e-4
chr14	76635562	76635661	14712546	0	-	0.515152	(0.49,0.53]	chr14	1152724	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187O7.3:RPSAP3	ENSG00000259124.1:ENSG00000242952.1	ENST00000554926.1:ENST00000464073.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	1	105	2	4.12263	5.063395	6.00416	0.00591451	3.11817e-12	0.0427941	6.20225e-10
chr12	885796	885892	12681428	0	+	0.53125	(0.53,0.59]	chr12	984118	13	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43863	5.06337	5.68811	0.00254763	5.40688e-6	0.0233955	1.64762e-4
chr3	13388302	13388377	4046947	0	-	0.586667	(0.53,0.59]	chr3	339706	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.43863	5.06337	5.68811	0.00254763	5.40688e-6	0.0233955	1.64762e-4
chr3	129260332	129260400	3730447	0	+	0.544118	(0.53,0.59]	chr3	318913	1	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.43863	5.06337	5.68811	0.00254763	5.40688e-6	0.0233955	1.64762e-4
chr22	36516542	36516607	18499653	0	-	0.492308	(0.49,0.53]	chr22	1578423	2	CDS	CDS:UTR3:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1:ENST00000462794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.83319	5.063095000000001	6.293	1.34601e-4	4.1349e-8	0.00249552	2.61265e-6
chr2	239914589	239914689	3244894	0	-	0.37	(0.36,0.39]	chr2	285963	12	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.16143	5.06297	5.96451	0.00486719	1.13061e-7	0.0366328	6.97642e-6
chr11	57421296	57421373	12394575	0	-	0.571429	(0.53,0.59]	chr11	958676	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	171	2	4.40638	5.06296	5.71954	6.51208e-9	9.39103e-11	5.85031e-7	1.28737e-8
chr1	45693461	45693547	175254	0	+	0.430233	(0.42,0.455]	chr1	22794	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.75728	5.06276	5.36824	5.3817e-4	1.33083e-5	0.00686676	3.81624e-4
chr5	75350788	75350868	6037055	0	+	0.4625	(0.455,0.49]	chr5	473621	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	231	2	4.853	5.061904999999999	5.27081	1.03362e-9	1e-12	1.1759e-7	2.25522e-10
chr1	109311456	109311555	1219444	0	-	0.474747	(0.455,0.49]	chr1	118935	20	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.97525	5.061495	5.14774	1.38474e-4	7.45457e-5	0.00254294	0.00142165
chr9	131430559	131430659	10498105	0	+	0.46	(0.455,0.49]	chr9	793472	3	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.97525	5.061495	5.14774	1.38474e-4	7.45457e-5	0.00254294	0.00142165
chr1	155169539	155169619	1306434	0	-	0.5375	(0.53,0.59]	chr1	131771	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRTCAP2:RP11-201K10.3	ENSG00000163463.13:ENSG00000273088.2	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000473363.3:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	98	2	3.90561	5.060815	6.21602	4.56032e-7	1.37682e-7	2.04658e-5	8.24248e-6
chr22	19724278	19724364	18295922	0	+	0.732558	(0.59,1]	chr22	1552888	6	CDS	CDS:UTR3:EXON_MRNA	SEPT5-GP1BB:GP1BB	ENSG00000284874.1:ENSG00000203618.6	ENST00000431044.5:ENST00000366425.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	302	2	3.85799	5.060645	6.2633	2.3137e-6	5.23374e-11	8.13963e-5	8.38333e-9
chr12	7149607	7149693	12717378	0	+	0.604651	(0.59,1]	chr12	987718	2	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000541770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.44671	5.06054	5.67437	0.00931497	6.83706e-5	0.0586162	0.00132577
chr12	75688868	75688944	13420705	0	-	0.434211	(0.42,0.455]	chr12	1056542	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-114H23.1:RPL10P13	ENSG00000258077.2:ENSG00000258245.1	ENST00000552856.1:ENST00000550757.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	44	2	3.8515	5.06037	6.26924	0.0119089	4.53551e-8	0.0686664	2.82715e-6
chr1	25454382	25454482	104554	0	+	0.31	(0.29,0.33]	chr1	12253	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	4.42307	5.059655	5.69624	3.04069e-6	7.29486e-7	1.02073e-4	3.41021e-5
chr19	19121364	19121421	17502073	0	-	0.561404	(0.53,0.59]	chr19	1468659	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000591031.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.27526	5.059290000000001	5.84332	1.03921e-5	1.90853e-6	2.85526e-4	7.59317e-5
chrX	110109086	110109146	18820292	0	+	0.483333	(0.455,0.49]	chrX	1603919	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	4.03349	5.059145	6.0848	4.13044e-5	1.71103e-7	9.71332e-4	8.87341e-6
chrX	110144797	110144876	18820650	0	+	0.443038	(0.42,0.455]	chrX	1603925	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	3.08182	5.058855	7.03589	6.80627e-4	5.18294e-11	0.00876781	7.57535e-9
chr17	63764102	63764190	16634855	0	-	0.409091	(0.39,0.42]	chr17	1367610	2	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	5	151	2	3.74093	5.058385	6.37584	2.70505e-7	1e-12	1.30749e-5	2.46312e-10
chr1	65616007	65616079	253470	0	+	0.402778	(0.39,0.42]	chr1	28865	1	CDS	CDS:EXON_MRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.85207	5.057805	6.26354	1.28587e-4	3.79414e-8	0.00241206	2.43463e-6
chr4	39973742	39973842	4802074	0	+	0.53	(0.49,0.53]	chr4	396208	4	EXON_PSEUDO	EXON_PSEUDO	PABPC1P1	ENSG00000231707.4	ENST00000506347.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	237	2	4.94387	5.05761	5.17135	5.11736e-10	1e-12	6.35131e-8	2.25522e-10
chr22	37855564	37855644	18364449	0	+	0.5125	(0.49,0.53]	chr22	1562162	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	4.58675	5.0575600000000005	5.52837	7.50805e-6	1.05095e-6	2.3779e-4	4.17035e-5
chrX	134770997	134771093	19245496	0	-	0.354167	(0.33,0.36]	chrX	1634524	16	UTR3	UTR3:EXON_MRNA	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10	protein_coding	protein_coding	protein_coding	protein_coding	4	119	2	4.816	5.057485	5.29897	1.47308e-9	7.40319e-12	1.48321e-7	1.45331e-9
chr4	144114688	144114767	5696584	0	-	0.43038	(0.42,0.455]	chr4	451531	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000510771.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	8	295	2	4.16595	5.05737	5.94879	1.00142e-9	1e-12	1.14425e-7	2.25522e-10
chr2	75658943	75659042	1894598	0	+	0.292929	(0.29,0.33]	chr2	179770	38	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	5.03124	5.057270000000001	5.0833	9.06368e-5	4.57622e-5	0.00167558	0.00105479
chr19	12643552	12643644	17469626	0	-	0.586957	(0.53,0.59]	chr19	1462695	4	EXON_PSEUDO	EXON_PSEUDO	RPL10P16	ENSG00000178464.6	ENST00000325000.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	184	2	3.86841	5.057265	6.24612	6.03353e-7	1e-12	2.8694e-5	2.25522e-10
chr1	203739662	203739754	669879	0	+	0.521739	(0.49,0.53]	chr1	67515	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	5.03381	5.0572099999999995	5.08061	1.49689e-4	1.00361e-4	0.0024973	0.00196575
chr3	14467904	14467956	3320650	0	+	0.5	(0.49,0.53]	chr3	292245	2	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	5.03381	5.0572099999999995	5.08061	1.49689e-4	1.00361e-4	0.0024973	0.00196575
chr7	56079527	56079587	8290737	0	+	0.583333	(0.53,0.59]	chr7	631573	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	4.27016	5.05674	5.84332	1.90853e-6	2.78714e-7	7.59317e-5	1.34066e-5
chr19	48922324	48922424	17367849	0	+	0.58	(0.53,0.59]	chr19	1442159	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	174	2	4.73153	5.0566949999999995	5.38186	2.01978e-9	3.27743e-10	2.10939e-7	3.90518e-8
chr17	78972363	78972462	16698076	0	-	0.707071	(0.59,1]	chr17	1376215	8	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5:ENST00000588508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	5.03834	5.0564350000000005	5.07453	0.00117617	0.00108238	0.0132131	0.0118355
chr1	35636370	35636432	938673	0	-	0.387097	(0.36,0.39]	chr1	98720	2	CDS	CDS:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.30503	5.054985	5.80494	7.76959e-6	9.78955e-7	2.43892e-4	3.91899e-5
chr8	143992464	143992536	9649808	0	+	0.569444	(0.53,0.59]	chr8	731409	1	CDS	CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000534791.5:ENST00000525513.1:ENST00000533044.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	82	2	4.13142	5.0549800000000005	5.97854	8.11888e-7	7.61837e-7	3.51585e-5	3.35153e-5
chr13	99552166	99552246	13865546	0	+	0.4125	(0.39,0.42]	chr13	1087213	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	4.53831	5.054555000000001	5.5708	1.30829e-6	1.95394e-10	5.53834e-5	2.46454e-8
chr11	119096705	119096802	12626612	0	-	0.463918	(0.455,0.49]	chr11	979850	8	UTR3	UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	3.61387	5.054195	6.49452	2.88949e-5	6.22217e-9	7.23839e-4	5.13192e-7
chr3	184242513	184242613	4622917	0	-	0.61	(0.59,1]	chr3	381714	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000485912.1:ENST00000455059.5:ENST00000446569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	116	2	3.90203	5.054024999999999	6.20602	1.11836e-5	6.20993e-6	3.02696e-4	2.03021e-4
chr8	30353130	30353227	9253464	0	+	0.587629	(0.53,0.59]	chr8	708964	14	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	14	477	2	4.20002	5.0540199999999995	5.90802	1.23871e-11	1e-12	2.10094e-9	2.46312e-10
chr17	44075309	44075380	16234042	0	+	0.605634	(0.59,1]	chr17	1314327	1	CDS	CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.97015	5.053470000000001	5.13679	0.00140057	9.28022e-4	0.0144327	0.0111748
chr14	94800935	94801023	14776639	0	-	0.579545	(0.53,0.59]	chr14	1157598	2	EXON_PSEUDO	EXON_PSEUDO	RPL15P2	ENSG00000240914.1	ENST00000490252.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	35	2	4.77222	5.052865000000001	5.33351	6.67251e-4	4.35359e-5	0.00867533	0.00091744700000000005
chr14	102008257	102008337	14495413	0	+	0.55	(0.53,0.59]	chr14	1133081	2	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.77222	5.052865000000001	5.33351	6.67251e-4	4.35359e-5	0.00867533	0.00091744700000000005
chr1	21855598	21855675	890989	0	-	0.74026	(0.59,1]	chr1	92406	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.58133	5.05271	6.52409	8.92036e-4	6.1879e-7	0.010856	2.65084e-5
chr3	13321751	13321835	4046243	0	-	0.547619	(0.53,0.59]	chr3	339530	3	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	130	2	4.31007	5.052675	5.79528	2.61912e-6	2.32158e-9	9.89086e-5	2.19263e-7
chr16	33990470	33990532	15924695	0	-	0.532258	(0.53,0.59]	chr16	1276962	2	EXON_PSEUDO	EXON_PSEUDO	BCAP31P1	ENSG00000261217.2	ENST00000565437.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	48	2	3.82407	5.052625	6.28118	0.0179666	8.87941e-8	0.0918323	5.04867e-6
chr11	44126885	44126955	11926397	0	+	0.471429	(0.455,0.49]	chr11	911550	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000525559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.20189	5.051605	5.90132	0.00397662	6.63378e-7	0.0322851	2.82038e-5
chr1	161214272	161214352	499205	0	+	0.4375	(0.42,0.455]	chr1	54050	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	154	2	4.82599	5.050485	5.27498	1.27707e-9	2.0923e-11	1.41135e-7	3.37635e-9
chr19	7630572	7630659	17217724	0	+	0.482759	(0.455,0.49]	chr19	1416861	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PET100:CTD-3214H19.4	ENSG00000229833.10:ENSG00000268400.5	ENST00000594797.6:ENST00000598664.5:ENST00000623154.1:ENST00000599243.5:ENST00000456958.7:ENST00000601406.5:ENST00000601829.1:ENST00000595866.1:ENST00000598540.6:ENST00000600836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	1	55	2	3.89235	5.050455	6.20856	9.60445e-5	6.55518e-8	0.00190731	3.89009e-6
chr17	64005106	64005131	16636205	0	-	0.48	(0.455,0.49]	chr17	1368048	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5:ENST00000584084.1:ENST00000584403.5:ENST00000580011.1:ENST00000580389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.77318	5.050385	5.32759	4.7888e-4	1.92345e-5	0.00628636	5.18397e-4
chr6	64368112	64368212	7770562	0	-	0.46	(0.455,0.49]	chr6	595994	607	INTRON	INTRON	EYS	ENSG00000188107.15	ENST00000503581.6:ENST00000370621.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.77318	5.050385	5.32759	4.7888e-4	1.92345e-5	0.00628636	5.18397e-4
chr1	12208420	12208520	47313	0	+	0.55	(0.53,0.59]	chr1	6130	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.8188	5.04999	6.28118	1.54941e-4	8.87941e-8	0.0028049	5.04867e-6
chr1	30931694	30931789	916271	0	-	0.305263	(0.29,0.33]	chr1	95957	3	UTR3	UTR3:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	4.19615	5.0499849999999995	5.90382	2.2256e-5	3.10438e-7	5.84518e-4	1.47195e-5
chr14	30738395	30738495	14565988	0	-	0.33	(0.29,0.33]	chr14	1141140	29	INTRON	INTRON	RP11-159L20.2	ENSG00000258558.1	ENST00000554665.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.63974	5.04995	5.46016	4.81181e-4	7.10374e-6	0.00677016	2.0881e-4
chr5	163491649	163491746	6343790	0	+	0.309278	(0.29,0.33]	chr5	494110	6	UTR3	UTR3:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000393915.9:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.63974	5.04995	5.46016	4.81181e-4	7.10374e-6	0.00677016	2.0881e-4
chr16	67438442	67438527	15988525	0	-	0.552941	(0.53,0.59]	chr16	1283071	6	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0D1	ENSG00000159720.12	ENST00000568620.5:ENST00000290949.8:ENST00000602876.5:ENST00000563305.1:ENST00000565835.5:ENST00000426604.7:ENST00000540149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	3.85383	5.049925	6.24602	5.99548e-6	1.15746e-7	1.97492e-4	6.3314e-6
chr10	125141647	125141747	11732926	0	-	0.49	(0.455,0.49]	chr10	895324	35	INTRON	INTRON	CTBP2	ENSG00000175029.17	ENST00000337195.9:ENST00000411419.6:ENST00000494626.6:ENST00000531469.5:ENST00000460976.5:ENST00000476817.1:ENST00000530884.1:ENST00000467395.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.87186	5.0499	5.22794	2.33781e-4	4.80556e-5	0.00385436	9.91058e-4
chr1	55058035	55058122	203787	0	+	0.586207	(0.53,0.59]	chr1	26156	1	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	326	2	4.23453	5.04979	5.86505	4.5409e-9	1e-12	4.25515e-7	2.25522e-10
chr3	82807550	82807644	4305434	0	-	0.468085	(0.455,0.49]	chr3	359353	12	EXON_PSEUDO	EXON_PSEUDO	CYP51A1P1	ENSG00000241095.1	ENST00000492267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	44	2	3.81275	5.049145	6.28554	0.0138827	3.54381e-8	0.0760883	2.29553e-6
chr17	44011927	44012027	16555920	0	-	0.56	(0.53,0.59]	chr17	1358814	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.30776	5.048515	5.78927	0.00407289	2.83401e-6	0.0324137	9.62519e-5
chr10	71821875	71821945	11563270	0	-	0.585714	(0.53,0.59]	chr10	879985	1	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000493143.1:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	526	2	3.7677	5.04841	6.32912	1.08982e-8	1e-12	9.20477e-7	2.25522e-10
chr17	17816206	17816289	16465714	0	-	0.578313	(0.53,0.59]	chr17	1344704	1	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000447641.5:ENST00000490796.1:ENST00000584760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.40251	5.048310000000001	5.69411	5.01544e-6	4.48447e-6	1.7067e-4	1.41623e-4
chr12	49129671	49129722	13323989	0	-	0.568627	(0.53,0.59]	chr12	1045753	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000549870.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	227	2	4.42839	5.04819	5.66799	5.47391e-9	1e-12	4.61627e-7	2.46312e-10
chr1	150747776	150747843	1290230	0	-	0.402985	(0.39,0.42]	chr1	128431	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000681357.1:ENST00000448301.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.89196	5.0481549999999995	5.20435	2.62166e-4	2.91423e-5	0.0039188	7.26551e-4
chr22	38479592	38479671	18367013	0	+	0.379747	(0.36,0.39]	chr22	1562547	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDELR3	ENSG00000100196.11	ENST00000409006.3:ENST00000216014.9:ENST00000471268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.73346	5.0476849999999995	5.36191	3.2963e-4	1.79406e-5	0.00504024	4.45904e-4
chr4	109817935	109818012	5041252	0	+	0.376623	(0.36,0.39]	chr4	410130	1	CDS	CDS:EXON_MRNA	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5:ENST00000226796.7:ENST00000503671.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.73346	5.0476849999999995	5.36191	3.2963e-4	1.79406e-5	0.00504024	4.45904e-4
chr17	31360611	31360711	16194549	0	+	0.5	(0.49,0.53]	chr17	1307494	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NF1	ENSG00000196712.18	ENST00000356175.7:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000471572.6:ENST00000577967.1:ENST00000468273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.67972	5.0476600000000005	5.4156	6.94757e-4	1.84143e-5	0.00876781	4.53637e-4
chr7	75051320	75051419	8857498	0	-	0.262626	[0,0.29]	chr7	676604	79	INTRON	INTRON	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000618102.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.45419	5.04761	5.64103	0.00133426	1.11918e-6	0.0139317	4.85699e-5
chr3	52695503	52695587	4184958	0	-	0.345238	(0.33,0.36]	chr3	353156	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000394783.7:ENST00000491606.5:ENST00000481643.5:ENST00000484163.5:ENST00000463827.1:ENST00000480080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.6856	5.047575	5.40955	3.92435e-4	1.14206e-5	0.00583618	3.08108e-4
chr5	96797249	96797309	6721329	0	-	0.416667	(0.39,0.42]	chr5	517471	1	CDS	CDS:UTR5:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.3313	5.04687	5.76244	0.00209984	1.61725e-6	0.0204266	5.98677e-5
chrX	154431829	154431904	18917866	0	+	0.48	(0.455,0.49]	chrX	1611894	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000446552.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	91	2	5.01795	5.04681	5.07567	2.66992e-8	1.97355e-8	1.97197e-6	1.39098e-6
chr6	30617865	30617943	7111647	0	+	0.525641	(0.49,0.53]	chr6	544904	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.84744	5.046615	5.24579	3.70203e-4	4.073e-5	0.00515475	9.64741e-4
chr1	150965659	150965757	1291361	0	-	0.489796	(0.455,0.49]	chr1	128670	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	174	2	4.82565	5.04632	5.26699	2.79396e-9	7.59626e-12	2.79164e-7	1.36117e-9
chr1	226071350	226071414	738416	0	+	0.515625	(0.49,0.53]	chr1	74475	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	4.32769	5.046125	5.76456	6.54988e-6	1.57714e-6	1.94116e-4	6.4504e-5
chr1	183553796	183553895	598035	0	+	0.474747	(0.455,0.49]	chr1	62141	7	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.96464	5.045945	6.12725	6.27408e-5	1.23635e-7	0.00135074	6.7072e-6
chr1	160351743	160351805	496734	0	+	0.516129	(0.49,0.53]	chr1	53465	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.41615	5.045920000000001	6.67569	9.74162e-5	1.65563e-9	0.00193088	1.6405e-7
chr6	27807715	27807806	7649604	0	-	0.549451	(0.53,0.59]	chr6	582801	2	CDS	CDS:EXON_MRNA	H2BC13	ENSG00000185130.5	ENST00000377401.3	protein_coding	protein_coding	protein_coding	protein_coding	4	169	2	4.39426	5.04584	5.69742	7.43388e-9	1.1115e-10	6.01751e-7	1.64771e-8
chr8	100709458	100709550	9976006	0	-	0.532609	(0.53,0.59]	chr8	752674	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	76	2899	2	5.04158	5.04571	5.04984	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	507993	508093	4676327	0	+	0.45	(0.42,0.455]	chr4	387152	4	SS5_PROX	SS5_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.64624	5.045325	5.44441	8.75333e-4	8.23077e-6	0.0101169	2.56136e-4
chr12	49185465	49185554	13324021	0	-	0.494382	(0.49,0.53]	chr12	1045766	5	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	555	2	4.43152	5.044684999999999	5.65785	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	100580376	100580475	8951928	0	-	0.454545	(0.42,0.455]	chr7	684087	17	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	4.20049	5.044230000000001	5.88797	1.49765e-5	3.72505e-7	3.83096e-4	1.92638e-5
chr7	98386584	98386683	8943312	0	-	0.40404	(0.39,0.42]	chr7	682612	1	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	217	2	4.78174	5.043925	5.30611	6.99174e-12	1.89271e-12	1.37827e-9	3.98751e-10
chrX	23675040	23675091	18615953	0	+	0.352941	(0.33,0.36]	chrX	1589667	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000495599.1:ENST00000379331.3:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.93997	5.04387	6.14777	9.37165e-5	5.68759e-8	0.00186979	3.43245e-6
chr4	56460328	56460427	4848733	0	+	0.383838	(0.36,0.39]	chr4	399473	9	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	35	901	2	4.94372	5.04383	5.14394	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	224189947	224190040	728456	0	+	0.397849	(0.39,0.42]	chr1	73579	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	4.27945	5.0434	5.80735	4.99312e-7	2.07257e-7	2.4714e-5	1.04734e-5
chr4	41954069	41954099	4809486	0	+	0.333333	(0.33,0.36]	chr4	396955	1	CDS	CDS:UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.1284	5.043215	5.95803	0.00407303	2.53891e-7	0.0324137	1.24442e-5
chr2	47377013	47377077	1784387	0	+	0.390625	(0.39,0.42]	chr2	172404	1	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	4.882	5.043175	5.20435	2.91423e-5	9.72017e-8	7.26551e-4	5.44683e-6
chr2	63605279	63605336	1850123	0	+	0.561404	(0.53,0.59]	chr2	175432	1	CDS	CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	3.7312	5.04314	6.35508	1.38467e-5	4.77539e-8	3.5918e-4	3.2714e-6
chr19	14564181	14564234	17243456	0	+	0.584906	(0.53,0.59]	chr19	1422049	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	95	2	3.46612	5.04313	6.62014	1.16467e-5	6.02789e-9	3.43116e-4	5.00481e-7
chr11	130110599	130110661	12206779	0	+	0.5	(0.49,0.53]	chr11	942003	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000529483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	4.16626	5.0428049999999995	5.91935	5.42608e-7	5.27035e-7	2.57927e-5	2.37553e-5
chr3	43715058	43715158	3441025	0	+	0.36	(0.33,0.36]	chr3	299373	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.83198	5.042529999999999	5.25308	1.88689e-4	2.94355e-5	0.0032588	6.67979e-4
chr7	135619600	135619690	8553041	0	+	0.344444	(0.33,0.36]	chr7	652838	3	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.83198	5.042529999999999	5.25308	1.88689e-4	2.94355e-5	0.0032588	6.67979e-4
chrX	30219060	30219155	18640662	0	+	0.484211	(0.455,0.49]	chrX	1590509	5	CDS	CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.63978	5.0423	5.44482	6.94032e-4	1.36044e-5	0.00876781	3.54469e-4
chr12	80103246	80103333	13435356	0	-	0.436782	(0.42,0.455]	chr12	1057372	5	EXON_PSEUDO	EXON_PSEUDO	RP11-244J10.1	ENSG00000230291.5	ENST00000492623.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.05954	5.042175	6.0248100000000004	0.00617886	2.97136e-7	0.0439741	1.42027e-5
chr8	18059571	18059637	9732831	0	-	0.439394	(0.42,0.455]	chr8	736297	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000521542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.05954	5.042175	6.0248100000000004	0.00617886	2.97136e-7	0.0439741	1.42027e-5
chr17	15465162	15465262	16456268	0	-	0.47	(0.455,0.49]	chr17	1343279	117	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.41041	5.0419	5.67339	0.00218771	2.05982e-6	0.0202707	8.10246e-5
chr4	109463551	109463644	5039100	0	+	0.516129	(0.49,0.53]	chr4	409917	8	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.68499	5.0417950000000005	6.3986	2.9991e-4	1.75841e-8	0.00472028	1.26398e-6
chrX	23674989	23675040	18615952	0	+	0.411765	(0.39,0.42]	chrX	1589667	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000495599.1:ENST00000379331.3:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	3.93996	5.04158	6.1432	0.00841622	9.87413e-8	0.054565	5.5198e-6
chr1	147178841	147178936	453649	0	+	0.378947	(0.36,0.39]	chr1	45093	11	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	111	2	4.58747	5.041169999999999	5.49487	6.55819e-4	1.39433e-12	0.00860229	3.02523e-10
chr19	19120106	19120183	17502055	0	-	0.688312	(0.59,1]	chr19	1468647	2	CDS	CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000591443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	87	2	3.99997	5.041145	6.08232	1.30803e-4	8.23309e-6	0.00243846	2.34786e-4
chr11	2925009	2925097	11769443	0	+	0.659091	(0.59,1]	chr11	900416	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000463571.5:ENST00000441077.5:ENST00000449603.5:ENST00000495518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.54183	5.040760000000001	5.53969	0.0070583	1.29608e-4	0.0478044	0.00223885
chr11	119055749	119055843	12626558	0	-	0.489362	(0.455,0.49]	chr11	979829	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000534233.5:ENST00000526656.5:ENST00000531968.5:ENST00000532421.5:ENST00000533381.5:ENST00000527038.6:ENST00000622474.4:ENST00000529174.1:ENST00000530467.5:ENST00000610597.1:ENST00000526354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.50805	5.040615	5.57318	0.00122223	6.11867e-6	0.0135383	1.83393e-4
chr6	20109597	20109673	7628534	0	-	0.486842	(0.455,0.49]	chr6	581167	1	CDS	CDS:EXON_MRNA	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.50805	5.040615	5.57318	0.00122223	6.11867e-6	0.0135383	1.83393e-4
chr1	84495881	84495972	333794	0	+	0.406593	(0.39,0.42]	chr1	32836	1	CDS	CDS:EXON_MRNA	RPF1	ENSG00000117133.11	ENST00000370654.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.93737	5.040285	6.1432	7.80292e-5	9.87413e-8	0.00162998	5.5198e-6
chr4	102315742	102315830	5561183	0	-	0.409091	(0.39,0.42]	chr4	444114	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1:ENST00000510255.5:ENST00000514000.5:ENST00000512657.5:ENST00000502903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.93737	5.040285	6.1432	7.80292e-5	9.87413e-8	0.00162998	5.5198e-6
chr1	30739000	30739062	915614	0	-	0.596774	(0.59,1]	chr1	95880	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	LAPTM5:MIR4420	ENSG00000162511.8:ENSG00000264773.1	ENST00000294507.4:ENST00000464569.1:ENST00000583944.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	2	181	2	4.58853	5.04018	5.49183	5.46127e-6	1.09136e-8	1.8199e-4	8.34724e-7
chr19	7913113	7913210	17218872	0	+	0.536082	(0.53,0.59]	chr19	1417269	8	UTR3	UTR3:EXON_MRNA	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000397983.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.5586	5.04014	5.52168	0.00161229	1.48967e-5	0.0169168	3.81697e-4
chr9	35699093	35699156	10639456	0	-	0.555556	(0.53,0.59]	chr9	804979	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000489255.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.5586	5.04014	5.52168	0.00161229	1.48967e-5	0.0169168	3.81697e-4
chr19	35383224	35383316	17304918	0	+	0.467391	(0.455,0.49]	chr19	1430943	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P7	ENSG00000268222.1	ENST00000596811.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	57	2	4.75005	5.038819999999999	5.32759	1.92345e-5	2.8854e-7	5.18397e-4	1.38392e-5
chr16	56466875	56466967	15678892	0	+	0.434783	(0.42,0.455]	chr16	1246347	1	CDS	CDS:UTR3:EXON_MRNA	OGFOD1	ENSG00000087263.17	ENST00000561646.5:ENST00000336111.9:ENST00000566157.6:ENST00000568397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.40276	5.03881	5.67486	0.0017618	3.42598e-6	0.0180053	1.12506e-4
chr1	1043822	1043889	2292	0	+	0.626866	(0.59,1]	chr1	495	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.44671	5.03878	5.63085	0.00931497	8.43355e-5	0.0586162	0.0015859
chr20	38128947	38129045	17962920	0	-	0.602041	(0.59,1]	chr20	1522305	17	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.44671	5.03878	5.63085	0.00931497	8.43355e-5	0.0586162	0.0015859
chr5	17354252	17354345	6473546	0	-	0.462366	(0.455,0.49]	chr5	503559	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	FTH1P10	ENSG00000223361.5	ENST00000401830.3:ENST00000430907.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	204	2	3.33182	5.038735	6.74565	2.25912e-6	1e-12	8.76753e-5	2.25522e-10
chr20	839623	839711	17872621	0	-	0.625	(0.59,1]	chr20	1512128	3	EXON_PSEUDO	EXON_PSEUDO	RPS10P5	ENSG00000101278.6	ENST00000492704.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	43	2	4.7945	5.03867	5.28284	0.0031766	4.04404e-4	0.0279054	0.00550292
chr6	26546642	26546739	7102839	0	+	0.412371	(0.39,0.42]	chr6	543213	13	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	4.15174	5.03866	5.92558	2.00458e-7	4.62816e-8	1.13771e-5	2.87822e-6
chr15	76283756	76283825	15382126	0	-	0.434783	(0.42,0.455]	chr15	1216343	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000560816.5:ENST00000558803.1:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	4.09661	5.038165	5.97972	2.79795e-5	4.13864e-7	7.07527e-4	1.88179e-5
chr10	812043	812141	11337477	0	-	0.561224	(0.53,0.59]	chr10	864510	27	UTR3	UTR3:EXON_MRNA:INTRON	LARP4B	ENSG00000107929.15	ENST00000614908.4:ENST00000316157.8:ENST00000609318.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.95233	5.03767	5.12301	3.02711e-4	1.2852e-4	0.00439897	0.00241206
chr16	28487455	28487541	15905595	0	-	0.581395	(0.53,0.59]	chr16	1273639	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-435I10.4:CLN3	ENSG00000261832.6:ENSG00000188603.22	ENST00000635887.1:ENST00000637376.1:ENST00000636078.1:ENST00000636503.1:ENST00000568224.4:ENST00000636017.1:ENST00000636866.1:ENST00000637299.1:ENST00000636766.1:ENST00000637100.1:ENST00000569430.7:ENST00000359984.12:ENST00000360019.8:ENST00000636147.2:ENST00000563874.5:ENST00000357857.14:ENST00000333496.14:ENST00000561689.6:ENST00000395653.9:ENST00000357806.11:ENST00000568076.6:ENST00000637184.1:ENST00000636839.1:ENST00000637107.1:ENST00000636351.1:ENST00000636977.1:ENST00000637578.1:ENST00000635958.1:ENST00000567963.6:ENST00000568452.6:ENST00000637871.1:ENST00000565316.6:ENST00000628023.3:ENST00000636228.1:ENST00000635861.1:ENST00000636172.1:ENST00000355477.10:ENST00000565140.5:ENST00000566057.5:ENST00000569030.5:ENST00000637699.1:ENST00000568422.6:ENST00000636853.1:ENST00000566824.6:ENST00000635973.1:ENST00000568497.6:ENST00000564574.5:ENST00000568472.6:ENST00000566083.6:ENST00000565778.6:ENST00000565047.1:ENST00000568558.6:ENST00000565688.5:ENST00000567495.6:ENST00000561505.2:ENST00000637985.1:ENST00000568443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.95233	5.03767	5.12301	3.02711e-4	1.2852e-4	0.00439897	0.00241206
chr11	111857601	111857662	12603256	0	-	0.57377	(0.53,0.59]	chr11	977139	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG9:RP11-108O10.8	ENSG00000086848.15:ENSG00000258529.5	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000613181.4:ENST00000527714.5:ENST00000618252.1:ENST00000612489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.95825	5.03766	5.11707	2.87508e-4	1.35965e-4	0.00457439	0.00231202
chr2	85320885	85320983	2770119	0	-	0.377551	(0.36,0.39]	chr2	245643	30	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	3.80747	5.037355	6.26724	1.0137e-6	2.79819e-8	4.48113e-5	1.8758e-6
chr4	139698307	139698389	5671436	0	-	0.47561	(0.455,0.49]	chr4	450574	3	EXON_PSEUDO	EXON_PSEUDO	H3P16	ENSG00000178458.5	ENST00000230495.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	70	2	3.54461	5.036955	6.5293	4.40117e-5	2.21315e-9	9.24938e-4	2.27943e-7
chr16	69696457	69696556	15725323	0	+	0.353535	(0.33,0.36]	chr16	1252140	2	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.52266	5.036685	5.55071	8.34989e-4	4.61342e-6	0.0102956	0.00014480800000000001
chr3	84751537	84751637	4306712	0	-	0.34	(0.33,0.36]	chr3	359420	48	INTRON	INTRON	LINC00971	ENSG00000242641.6	ENST00000484892.5	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.52266	5.036685	5.55071	8.34989e-4	4.61342e-6	0.0102956	0.00014480800000000001
chr16	69462632	69462730	15723946	0	+	0.530612	(0.53,0.59]	chr16	1252041	2	UTR3	UTR3:EXON_MRNA	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6:ENST00000561792.6:ENST00000568237.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	4.00995	5.036035	6.06212	1.99748e-6	4.23179e-7	7.14901e-5	2.1371e-5
chrY	18992466	18992547	19363588	0	-	0.54321	(0.53,0.59]	chrY	1647595	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	TTTY14:CD24P4	ENSG00000176728.10:ENSG00000185275.6	ENST00000651734.1:ENST00000651886.1:ENST00000651396.1:ENST00000652699.1:ENST00000650923.1:ENST00000650897.1:ENST00000667260.1:ENST00000651032.1:ENST00000652153.1:ENST00000652348.1:ENST00000454875.2:ENST00000667640.1:ENST00000664804.1:ENST00000657901.1:ENST00000670354.1:ENST00000670243.1:ENST00000669716.1:ENST00000663061.1:ENST00000660026.1:ENST00000667262.1:ENST00000656768.1:ENST00000651355.1:ENST00000669869.1:ENST00000452584.5:ENST00000667617.1:ENST00000651286.1:ENST00000331787.2:ENST00000382840.3	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	61	2	4.27526	5.035270000000001	5.79528	1.03921e-5	2.61912e-6	2.85526e-4	9.89086e-5
chr19	58393045	58393115	17412752	0	+	0.557143	(0.53,0.59]	chr19	1451034	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	168	2	4.32347	5.035030000000001	5.74659	1.39207e-8	6.95861e-11	1.03246e-6	1.08052e-8
chr18	59333167	59333244	17142367	0	-	0.519481	(0.49,0.53]	chr18	1407613	2	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	167	2	4.66301	5.0348	5.40659	7.33599e-9	5.71954e-12	6.50931e-7	1.06141e-9
chr10	28620092	28620190	10990636	0	+	0.387755	(0.36,0.39]	chr10	835918	6	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.80225	5.034745	6.26724	1.85308e-4	2.79819e-8	0.00322093	1.8758e-6
chr1	155188212	155188308	1306642	0	-	0.4375	(0.42,0.455]	chr1	131814	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MUC1	ENSG00000185499.16	ENST00000620103.4:ENST00000338684.9:ENST00000610359.4:ENST00000611571.4:ENST00000611577.4:ENST00000612778.4:ENST00000614519.4:ENST00000615517.4:ENST00000462317.5:ENST00000368392.7:ENST00000368393.7:ENST00000438413.5:ENST00000457295.6:ENST00000462215.5:ENST00000610468.4:ENST00000337604.6:ENST00000342482.8:ENST00000343256.9:ENST00000368389.6:ENST00000368390.7:ENST00000368396.8:ENST00000368398.7:ENST00000467134.5:ENST00000471283.5:ENST00000498431.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	4.2855	5.03465	5.7838	8.02587e-6	1.6512e-6	2.50919e-4	6.0825e-5
chr11	6641807	6641907	11783238	0	+	0.58	(0.53,0.59]	chr11	902009	67	INTRON	INTRON	RP11-732A19.6	ENSG00000255410.2	ENST00000656961.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.66936	5.03418	5.399	0.00103174	3.02387e-5	0.0121443	6.78876e-4
chr2	175926773	175926873	3028105	0	-	0.35	(0.33,0.36]	chr2	268146	30	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.98105	5.033799999999999	5.08655	1.32493e-4	4.6453e-5	0.00227943	0.00106753
chrX	123514772	123514872	18850546	0	+	0.5	(0.49,0.53]	chrX	1606058	4	EXON_PSEUDO	EXON_PSEUDO	H3P47	ENSG00000179101.5	ENST00000416267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	74	2	4.19762	5.0336	5.86958	7.54524e-7	4.23721e-7	3.49213e-5	1.92035e-5
chr4	56502148	56502244	4849150	0	+	0.354167	(0.33,0.36]	chr4	399579	4	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	131	2	4.59189	5.033415	5.47494	1.47859e-8	1.42675e-12	1.1842e-6	3.0898e-10
chr7	30633946	30634033	8203911	0	+	0.413793	(0.39,0.42]	chr7	625869	2	UTR3	UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	4.53831	5.033175	5.52804	1.30829e-6	2.96346e-10	5.53834e-5	3.5664e-8
chr9	133124339	133124439	10879221	0	-	0.51	(0.49,0.53]	chr9	825573	32	INTRON	INTRON	RALGDS:RP11-326L24.9	ENSG00000160271.16:ENSG00000285245.1	ENST00000393160.7:ENST00000393157.8:ENST00000647146.1:ENST00000372062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.74438	5.033085	5.32179	5.91752e-4	2.63311e-5	0.00743488	6.73425e-4
chr16	11114914	11115014	15541371	0	+	0.42	(0.39,0.42]	chr16	1230985	535	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.14886	5.0330449999999995	5.91723	0.00415881	5.41457e-7	0.0325842	2.37407e-5
chr8	47157677	47157771	9311234	0	+	0.478723	(0.455,0.49]	chr8	713302	7	EXON_PSEUDO	EXON_PSEUDO	RPL10AP2	ENSG00000188873.4	ENST00000479243.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	84	2	3.96899	5.032855	6.09672	2.27279e-7	8.84067e-8	1.1289e-5	5.61099e-6
chr1	54032149	54032249	1027175	0	-	0.38	(0.36,0.39]	chr1	106599	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000470395.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	148	2	4.23248	5.032375	5.83227	1.28371e-5	1e-12	3.70041e-4	2.25522e-10
chr19	49154656	49154752	17605451	0	-	0.510417	(0.49,0.53]	chr19	1483739	14	CDS	CDS:EXON_MRNA	HRC	ENSG00000130528.12	ENST00000252825.9:ENST00000595625.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.23006	5.032365	6.83467	0.00253719	3.95701e-10	0.0233955	4.60945e-8
chr16	18791668	18791766	15877062	0	-	0.265306	[0,0.29]	chr16	1269296	1	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	4.86043	5.032235	5.20404	2.26341e-5	9.6517e-8	5.9266e-4	5.4189e-6
chr11	2394060	2394126	11764946	0	+	0.621212	(0.59,1]	chr11	900163	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10:ENST00000533417.5:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000493525.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000524805.5:ENST00000530239.1:ENST00000531840.1:ENST00000481687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	117	2	4.04406	5.03218	6.0203	1.68221e-5	4.72081e-6	4.64895e-4	1.48019e-4
chr1	116397962	116398038	423886	0	+	0.526316	(0.49,0.53]	chr1	41819	2	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	4	204	2	4.45323	5.032175	5.61112	2.6067e-6	1e-12	9.88864e-5	2.25522e-10
chr14	103915065	103915089	14797170	0	-	0.458333	(0.455,0.49]	chr14	1159815	1	CDS	CDS:EXON_MRNA:INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2:ENST00000557260.1:ENST00000554528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	75	2	4.45334	5.031945	5.61055	3.16146e-6	4.89305e-8	1.16228e-4	3.02248e-6
chr18	68277977	68278066	17162260	0	-	0.41573	(0.39,0.42]	chr18	1408742	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-421N8.3:RP11-421N8.1	ENSG00000287907.1:ENSG00000260747.1	ENST00000661028.1:ENST00000567372.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	84	2	4.96127	5.03165	5.10203	3.99353e-8	1.50713e-8	2.81235e-6	1.10464e-6
chr21	37887192	37887292	18247788	0	-	0.45	(0.42,0.455]	chr21	1547488	461	INTRON	INTRON	KCNJ6	ENSG00000157542.11	ENST00000609713.2:ENST00000645093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.86038	5.03153	5.20268	3.34791e-4	3.59669e-5	0.00472923	8.71318e-4
chr3	39359331	39359429	3423602	0	+	0.428571	(0.42,0.455]	chr3	297918	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P24	ENSG00000223668.1	ENST00000451469.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.86038	5.03153	5.20268	3.34791e-4	3.59669e-5	0.00472923	8.71318e-4
chr4	138180640	138180715	5665162	0	-	0.44	(0.42,0.455]	chr4	450199	1	CDS	CDS:UTR3:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	5.01562	5.03121	5.0468	1.33918e-4	1.01971e-4	0.00229039	0.0019861
chr12	110340826	110340910	13085849	0	+	0.583333	(0.53,0.59]	chr12	1020526	3	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	118	2	2.57867	5.03079	7.48291	0.00198261	2.32814e-12	0.0195088	4.78354e-10
chr17	81921323	81921421	16710043	0	-	0.489796	(0.455,0.49]	chr17	1377880	32	UTR3	UTR3:EXON_MRNA	MAFG	ENSG00000197063.11	ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.66739	5.0306	6.39381	2.02214e-5	1.45725e-8	5.39633e-4	1.07259e-6
chr2	130657777	130657877	2062605	0	+	0.56	(0.53,0.59]	chr2	193852	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	POTEJ	ENSG00000222038.4	ENST00000409602.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.86823	5.030555	5.19288	4.35895e-4	9.22873e-5	0.00623608	0.0016906
chr16	57252567	57252664	15683877	0	+	0.57732000000000006	(0.53,0.59]	chr16	1247542	3	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8:ENST00000563234.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.00393	5.030010000000001	6.05609	0.0108084	4.62627e-7	0.064368	2.06661e-5
chr2	73248990	73249084	1885466	0	+	0.404255	(0.39,0.42]	chr2	178564	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000473786.5:ENST00000488856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	128	2	4.29161	5.029515	5.76742	1.15194e-8	2.73953e-11	9.5632e-7	4.28406e-9
chr5	103203029	103203129	6133290	0	+	0.29	[0,0.29]	chr5	479642	15	UTR3	UTR3:EXON_MRNA	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	4.82984	5.02907	5.2283	2.26004e-7	3.51056e-9	1.26728e-5	3.13803e-7
chr11	61789794	61789894	12405856	0	-	0.5	(0.49,0.53]	chr11	960560	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMEM258	ENSG00000134825.16	ENST00000535042.1:ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	184	2	4.09713	5.0286349999999995	5.96014	2.85878e-9	3.66362e-12	2.62069e-7	7.74293e-10
chr22	38479671	38479751	18367014	0	+	0.4875	(0.455,0.49]	chr22	1562547	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDELR3	ENSG00000100196.11	ENST00000409006.3:ENST00000216014.9:ENST00000471268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	4.51231	5.028575	5.54484	4.89523e-6	1.73754e-6	1.67428e-4	6.36428e-5
chr5	78475668	78475767	6051410	0	+	0.313131	(0.29,0.33]	chr5	474737	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8:ENST00000506858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.45534	5.02838	5.60142	0.00110984	2.77244e-6	0.0127344	9.47025e-5
chrX	54562997	54563097	18704378	0	+	0.26	[0,0.29]	chrX	1596125	25	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.85267	5.0283549999999995	5.20404	2.14908e-4	2.26341e-5	0.00332687	5.9266e-4
chr1	247298187	247298284	1604006	0	-	0.381443	(0.36,0.39]	chr1	159286	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.42503	5.02823	5.63143	0.00133228	3.24005e-6	0.0144372	1.07746e-4
chr5	71657734	71657831	6026821	0	+	0.402062	(0.39,0.42]	chr5	472497	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.89218	5.027825	5.16347	1.6518e-4	6.48089e-5	0.0029267300000000002	0.00126536
chr16	58716096	58716179	15967709	0	-	0.481928	(0.455,0.49]	chr16	1281418	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000494627.1:ENST00000564400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.56037	5.027445	6.49452	5.72551e-4	6.22217e-9	0.0078026	5.13192e-7
chr1	156137708	156137764	486157	0	+	0.589286	(0.53,0.59]	chr1	51297	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000498722.3:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	118	2	3.22395	5.027325	6.8307	5.81032e-6	9.38801e-10	1.75356e-4	1.08218e-7
chr10	87776320	87776373	11608097	0	-	0.471698	(0.455,0.49]	chr10	884041	1	CDS	CDS:UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.36307	5.02706	5.69105	0.00218641	2.83777e-6	0.0208941	9.62519e-5
chr14	75986030	75986125	14408330	0	+	0.484211	(0.455,0.49]	chr14	1126155	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFT43	ENSG00000119650.13	ENST00000555677.5:ENST00000679083.1:ENST00000314067.11:ENST00000542766.5:ENST00000555305.5:ENST00000554026.5:ENST00000238628.10:ENST00000555370.5:ENST00000556742.1:ENST00000553338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.20189	5.026719999999999	5.85155	0.00397662	9.4476e-7	0.0322851	3.80876e-5
chr7	149191132	149191223	9125459	0	-	0.483516	(0.455,0.49]	chr7	697062	2	EXON_PSEUDO	EXON_PSEUDO	RP4-800G7.1	ENSG00000239719.1	ENST00000461005.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	4.20189	5.026719999999999	5.85155	0.00397662	9.4476e-7	0.0322851	3.80876e-5
chr11	57389886	57389944	12394247	0	-	0.431034	(0.42,0.455]	chr11	958615	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1:ENST00000529411.1:ENST00000528835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	3.70273	5.0267	6.35067	0.0215502	8.53658e-9	0.102904	7.38823e-7
chr19	38309223	38309275	17559416	0	-	0.557692	(0.53,0.59]	chr19	1474579	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1:ENST00000587361.1:ENST00000587039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	3.87884	5.02593	6.17302	1.11478e-4	1.98983e-7	0.00213212	1.01095e-5
chr19	35658593	35658647	17306090	0	+	0.574074	(0.53,0.59]	chr19	1431269	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	112	2	4.6384	5.02517	5.41194	8.42977e-7	1.59569e-9	3.83773e-5	1.59652e-7
chr6	7281838	7281938	7586810	0	-	0.43	(0.42,0.455]	chr6	578692	8	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.50825	5.02493	6.54161	5.86898e-5	4.74233e-9	0.00129243	4.06115e-7
chr16	2257778	2257876	15825245	0	-	0.438776	(0.42,0.455]	chr16	1262348	22	EXON_MRNA	EXON_MRNA:INTRON	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5:ENST00000561518.5:ENST00000564311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	107	2	4.68105	5.024645	5.36824	1.33083e-5	3.45543e-10	3.81624e-4	4.0838e-8
chr19	44908532	44908620	17349673	0	+	0.602273	(0.59,1]	chr19	1439242	1	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000446996.5:ENST00000252486.9:ENST00000434152.5:ENST00000425718.1	protein_coding	protein_coding	protein_coding	protein_coding	4	272	2	4.40308	5.024485	5.64589	5.46989e-8	5.31653e-9	3.33802e-6	4.88338e-7
chr6	7339203	7339294	7587405	0	-	0.593407	(0.59,1]	chr6	578773	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	SSR1:CAGE1:RP11-69L16.5	ENSG00000124783.14:ENSG00000164304.16:ENSG00000220472.1	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8:ENST00000407940.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	113	2	3.81411	5.02444	6.23477	1.87674e-5	5.29741e-6	4.60644e-4	1.78149e-4
chrX	123514572	123514672	18850544	0	+	0.49	(0.455,0.49]	chrX	1606058	2	EXON_PSEUDO	EXON_PSEUDO	H3P47	ENSG00000179101.5	ENST00000416267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	115	2	4.7073	5.02423	5.34116	4.23594e-9	1.84338e-9	4.01622e-7	1.80197e-7
chr15	42233212	42233306	15239066	0	-	0.521277	(0.49,0.53]	chr15	1200217	1	CDS	CDS:UTR3:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000566014.1:ENST00000562946.5:ENST00000569075.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	4.17834	5.023960000000001	5.86958	1.74561e-5	7.54524e-7	4.38078e-4	3.49213e-5
chr16	34162958	34163034	15640439	0	+	0.473684	(0.455,0.49]	chr16	1242769	1	EXON_SMALL	EXON_SMALL	RNA5-8SP2	ENSG00000200434.1	ENST00000363564.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	4	171	2	4.32975	5.023675	5.7176	1.27857e-7	1e-12	7.7505e-6	2.25522e-10
chrX	135051116	135051209	19246089	0	-	0.548387	(0.53,0.59]	chrX	1634621	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RTL8A	ENSG00000203950.7	ENST00000370775.3:ENST00000518153.1:ENST00000520964.1:ENST00000522309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	3.69224	5.02366	6.35508	1.78865e-5	4.77539e-8	4.45448e-4	3.2714e-6
chr13	46781495	46781555	14012318	0	-	0.433333	(0.42,0.455]	chr13	1098858	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.75728	5.022555	5.28783	5.3817e-4	2.17539e-5	0.00686676	5.73422e-4
chr1	225921207	225921289	1531293	0	-	0.573171	(0.53,0.59]	chr1	153175	1	CDS	CDS:EXON_MRNA	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000466127.1:ENST00000446534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	107	2	3.19677	5.022525	6.84828	1.94039e-5	8.63547e-10	5.22287e-4	9.22462e-8
chr11	47419115	47419197	12386552	0	-	0.609756	(0.59,1]	chr11	956841	1	CDS	CDS:EXON_MRNA	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.9413	5.02238	5.10346	0.00191468	8.40506e-4	0.0190905	0.00981548
chr3	13399724	13399792	4047064	0	-	0.661765	(0.59,1]	chr3	339724	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.9413	5.02238	5.10346	0.00191468	8.40506e-4	0.0190905	0.00981548
chr8	80265706	80265796	9910868	0	-	0.6	(0.59,1]	chr8	748578	3	EXON_PSEUDO	EXON_PSEUDO	RP11-941H19.1	ENSG00000241746.1	ENST00000478813.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	42	2	4.9413	5.02238	5.10346	0.00191468	8.40506e-4	0.0190905	0.00981548
chr4	4894974	4895073	5289158	0	-	0.444444	(0.42,0.455]	chr4	426167	9	EXON_PSEUDO	EXON_PSEUDO	LDHAP1	ENSG00000251587.1	ENST00000509421.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	54	2	4.52766	5.022205	5.51675	5.14372e-6	1.58778e-6	1.73456e-4	5.89925e-5
chr17	81602974	81603072	16708656	0	-	0.489796	(0.455,0.49]	chr17	1377507	22	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.97258	5.02215	5.07172	1.84876e-4	8.3067e-5	0.00296795	0.00171126
chr4	18854724	18854824	4739237	0	+	0.36	(0.33,0.36]	chr4	392961	214	INTRON	INTRON	RP11-79N22.1	ENSG00000286046.1	ENST00000652661.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	4.95757	5.02206	5.08655	4.6453e-5	4.47484e-8	0.00106753	2.79784e-6
chr1	203721338	203721410	669687	0	+	0.430556	(0.42,0.455]	chr1	67478	3	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.91213	5.02191	5.13169	1.75074e-4	8.60227e-5	0.00306313	0.00160731
chr6	131652541	131652604	7402823	0	+	0.444444	(0.42,0.455]	chr6	567367	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.91213	5.02191	5.13169	1.75074e-4	8.60227e-5	0.00306313	0.00160731
chr11	18407471	18407566	11831567	0	+	0.442105	(0.42,0.455]	chr11	906046	2	UTR3	UTR3:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	87	2585	2	4.88807	5.021495	5.15492	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	33203007	33203106	7121297	0	+	0.545455	(0.53,0.59]	chr6	547396	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A7	ENSG00000112473.18	ENST00000374675.7:ENST00000374677.8:ENST00000463972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	144	2	4.98544	5.02147	5.0575	3.24657e-8	5.87915e-10	2.34482e-6	6.53018e-8
chr17	2682877	2682975	16086752	0	+	0.336735	(0.33,0.36]	chr17	1293760	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000675390.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.96487	5.021205	5.07754	9.26851e-5	7.92926e-5	0.00185187	0.00150306
chr12	95513651	95513727	13025183	0	+	0.434211	(0.42,0.455]	chr12	1014029	1	CDS	CDS:UTR3:EXON_MRNA	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.54792	5.021100000000001	5.49428	9.66045e-4	1.07978e-5	0.0115185	2.9314e-4
chr13	46156437	46156503	14009920	0	-	0.424242	(0.42,0.455]	chr13	1098567	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.54792	5.021100000000001	5.49428	9.66045e-4	1.07978e-5	0.0115185	2.9314e-4
chr22	38481352	38481423	18367032	0	+	0.450704	(0.42,0.455]	chr22	1562553	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDELR3	ENSG00000100196.11	ENST00000409006.3:ENST00000216014.9:ENST00000471268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.54792	5.021100000000001	5.49428	9.66045e-4	1.07978e-5	0.0115185	2.9314e-4
chrX	120626876	120626971	19197526	0	-	0.421053	(0.42,0.455]	chrX	1632210	7	CDS	CDS:EXON_MRNA	C1GALT1C1	ENSG00000171155.8	ENST00000304661.6:ENST00000371313.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.54792	5.021100000000001	5.49428	9.66045e-4	1.07978e-5	0.0115185	2.9314e-4
chr12	46188969	46189069	13313438	0	-	0.55	(0.53,0.59]	chr12	1043465	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5	protein_coding	protein_coding	protein_coding	protein_coding	5	216	2	4.68791	5.02058	5.35325	4.81043e-10	1.6917e-11	6.04555e-8	2.7853e-9
chr12	4098533	4098632	12704116	0	+	0.454545	(0.42,0.455]	chr12	985492	12	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.67981	5.01989	5.35997	5.38444e-4	2.41298e-5	0.00744072	5.6648e-4
chr4	109462900	109462993	5039093	0	+	0.451613	(0.42,0.455]	chr4	409917	1	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.67981	5.01989	5.35997	5.38444e-4	2.41298e-5	0.00744072	5.6648e-4
chrX	71567499	71567583	18733084	0	+	0.428571	(0.42,0.455]	chrX	1598837	1	CDS	CDS:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000474633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.67981	5.01989	5.35997	5.38444e-4	2.41298e-5	0.00744072	5.6648e-4
chr12	110428861	110428960	13537372	0	-	0.525253	(0.49,0.53]	chr12	1064862	253	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	3	147	2	4.54207	5.0198350000000005	5.4976	1.36824e-6	2.19202e-12	5.72609e-5	4.55756e-10
chr11	80653521	80653614	12489904	0	-	0.494624	(0.49,0.53]	chr11	971286	2	EXON_PSEUDO	EXON_PSEUDO	ARL6IP1P3	ENSG00000255014.1	ENST00000524544.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	41	2	3.94177	5.019769999999999	6.09777	0.0104929	1.87775e-7	0.063428	9.63683e-6
chr5	133959844	133959932	6843169	0	-	0.511364	(0.49,0.53]	chr5	523549	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	3.94177	5.019769999999999	6.09777	0.0104929	1.87775e-7	0.063428	9.63683e-6
chr5	10426389	10426455	5875459	0	+	0.469697	(0.455,0.49]	chr5	462048	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	93	2	4.67428	5.019745	5.36521	4.63488e-7	1.47552e-9	2.31256e-5	1.48481e-7
chr11	4132285	4132353	11774412	0	+	0.470588	(0.455,0.49]	chr11	901036	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.87633	5.01924	5.16215	2.95855e-4	5.04348e-5	0.00432147	0.00113788
chr19	49429865	49429959	17606391	0	-	0.478723	(0.455,0.49]	chr19	1483928	6	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.87633	5.01924	5.16215	2.95855e-4	5.04348e-5	0.00432147	0.00113788
chr11	1761308	1761331	12230511	0	-	0.478261	(0.455,0.49]	chr11	944417	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.97525	5.019035000000001	5.06282	1.38474e-4	1.16789e-4	0.00254294	0.0020505
chr16	88580119	88580219	15806149	0	+	0.47	(0.455,0.49]	chr16	1257904	20	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.97525	5.019035000000001	5.06282	1.38474e-4	1.16789e-4	0.00254294	0.0020505
chr9	37885947	37886036	10257575	0	+	0.460674	(0.455,0.49]	chr9	772020	4	EXON_PSEUDO	EXON_PSEUDO	TMX2P1	ENSG00000213839.4	ENST00000436507.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.97525	5.019035000000001	5.06282	1.38474e-4	1.16789e-4	0.00254294	0.0020505
chr10	58397739	58397838	11057884	0	+	0.464646	(0.455,0.49]	chr10	841634	28	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.68903	5.01879	6.34855	1.71879e-5	1.09383e-8	4.32994e-4	9.21346e-7
chr1	21874672	21874729	891206	0	-	0.596491	(0.59,1]	chr1	92506	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000427897.1:ENST00000498495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	53	2	3.98751	5.01858	6.04965	0.0301044	9.85057e-6	0.129773	2.72926e-4
chr1	119743914	119743977	432750	0	+	0.587302	(0.53,0.59]	chr1	42820	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000641213.1:ENST00000641947.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641023.2:ENST00000369409.9:ENST00000641375.1:ENST00000641891.1:ENST00000641756.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1:ENST00000482968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.77222	5.018565000000001	5.26491	6.67251e-4	6.31437e-5	0.00867533	0.00124286
chr12	908546	908619	12681669	0	+	0.561644	(0.53,0.59]	chr12	984182	2	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000540885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.77222	5.018565000000001	5.26491	6.67251e-4	6.31437e-5	0.00867533	0.00124286
chr12	56131476	56131566	12898272	0	+	0.577778	(0.53,0.59]	chr12	1004222	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	80	2	3.52495	5.018445	6.51194	5.15316e-5	1.37625e-8	0.00105223	1.11679e-6
chr19	4538586	4538677	17432453	0	-	0.681319	(0.59,1]	chr19	1455209	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTB-50L17.14:LRG1	ENSG00000267385.1:ENSG00000171236.10	ENST00000586020.1:ENST00000306390.7:ENST00000586883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.86977	5.017765	5.16576	0.00246014	6.55716e-4	0.0230058	0.0080931
chr6	27824436	27824480	7105158	0	+	0.5	(0.49,0.53]	chr6	543468	1	UTR3	UTR3:EXON_MRNA	H4C11	ENSG00000197238.5	ENST00000355057.3	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	4.06787	5.01767	5.96747	1.16062e-6	3.70439e-7	4.53337e-5	1.92378e-5
chr20	35703892	35703990	17955505	0	-	0.285714	[0,0.29]	chr20	1521211	27	UTR3	UTR3:EXON_MRNA	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.96431	5.01738	5.07045	1.20737e-4	5.08054e-5	0.00210079	0.00114377
chr17	43018591	43018684	16550681	0	-	0.526882	(0.49,0.53]	chr17	1358010	1	CDS	CDS:EXON_MRNA	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000587173.5:ENST00000420567.7:ENST00000590924.5:ENST00000589709.1:ENST00000589828.1	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.41615	5.01735	6.61855	9.74162e-5	2.73279e-9	0.00193088	2.53367e-7
chr3	33072598	33072698	4111725	0	-	0.51	(0.49,0.53]	chr3	343542	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	3.88887	5.0171	6.14533	9.98984e-5	9.58343e-8	0.00180257	6.01659e-6
chr12	64745658	64745724	13379062	0	-	0.545455	(0.53,0.59]	chr12	1054255	1	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	3.82407	5.01703	6.20999	0.0179666	1.51461e-7	0.0918323	8.00634e-6
chr2	189923628	189923726	2274548	0	+	0.469388	(0.455,0.49]	chr2	206588	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	3	115	2	4.63075	5.017025	5.4033	1.02236e-8	7.61238e-10	7.89931e-7	9.03421e-8
chr2	187467932	187468032	3070182	0	-	0.31	(0.29,0.33]	chr2	271836	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.2566	5.016875	5.77715	0.00303129	3.88822e-7	0.0257942	1.99593e-5
chr20	326564	326664	17870711	0	-	0.72	(0.59,1]	chr20	1511889	14	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.54183	5.016835	5.49184	0.0070583	1.61513e-4	0.0478044	0.00265627
chr6	109370410	109370467	7886685	0	-	0.473684	(0.455,0.49]	chr6	603698	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	245	2	4.98533	5.016775	5.04822	2.74728e-10	1e-12	3.69499e-8	2.25522e-10
chr10	73718960	73719059	11574644	0	-	0.363636	(0.36,0.39]	chr10	881377	4	SS5_PROX	SS5_PROX:INTRON	BMS1P4-AGAP5:BMS1P4	ENSG00000242288.9:ENSG00000271816.1:ENSG00000242338.6	ENST00000399449.3:ENST00000580790.1:ENST00000584747.5:ENST00000441263.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	0	27	2	4.93381	5.016605	5.0994	1.90009e-4	4.68763e-5	0.00302753	0.00107286
chr6	109368950	109369017	7886670	0	-	0.462687	(0.455,0.49]	chr6	603692	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	251	2	3.94097	5.016170000000001	6.09137	2.96585e-9	1e-12	2.94713e-7	2.25522e-10
chr20	44504800	44504891	17982048	0	-	0.571429	(0.53,0.59]	chr20	1523384	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	4.28673	5.016155	5.74558	3.61407e-6	1.92014e-8	1.29307e-4	1.36381e-6
chr20	4699413	4699507	17661019	0	+	0.702128	(0.59,1]	chr20	1493235	2	CDS	CDS:EXON_MRNA	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.58133	5.016125	6.45092	8.92036e-4	9.69699e-7	0.010856	3.89355e-5
chr8	30117581	30117680	9780667	0	-	0.40404	(0.39,0.42]	chr8	739549	3	EXON_PSEUDO	EXON_PSEUDO	RPS15AP24	ENSG00000241511.1	ENST00000492525.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.63883	5.015355	5.39188	5.68159e-4	1.75441e-5	0.0077844	4.38078e-4
chr6	30722590	30722645	7112201	0	+	0.581818	(0.53,0.59]	chr6	545058	2	CDS	CDS:UTR5:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	244	2	4.63998	5.015105	5.39023	9.44277e-11	1.17006e-11	1.42923e-8	1.99273e-9
chr4	164189877	164189975	5204349	0	+	0.408163	(0.39,0.42]	chr4	420030	17	EXON_PSEUDO	EXON_PSEUDO	RP11-39C10.1	ENSG00000250746.1	ENST00000509378.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	202	2	4.69349	5.01396	5.33443	3.85767e-7	1e-12	1.98905e-5	2.25522e-10
chr19	11448913	11448988	17231262	0	+	0.6	(0.59,1]	chr19	1419933	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000587290.5:ENST00000590098.1:ENST00000592435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	270	2	4.38181	5.01385	5.64589	6.37716e-8	5.31653e-9	3.80147e-6	4.88338e-7
chr15	64380957	64381038	15341547	0	-	0.530864	(0.53,0.59]	chr15	1211065	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	3.49159	5.01345	6.53531	6.29049e-5	1.20872e-8	0.00135218	9.09817e-7
chr5	81084811	81084909	6061134	0	+	0.520408	(0.49,0.53]	chr5	475691	37	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1:ENST00000502677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.67972	5.01331	5.3469	6.94757e-4	2.75121e-5	0.00876781	6.30607e-4
chr16	21971922	21972022	15586914	0	+	0.47	(0.455,0.49]	chr16	1235464	1	CDS	CDS:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	146	2	4.87865	5.013245	5.14784	8.38789e-9	4.36565e-11	7.30306e-7	6.51732e-9
chr1	21842238	21842309	890827	0	-	0.661972	(0.59,1]	chr1	92318	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	112	2	3.79127	5.01302	6.23477	2.1425e-5	5.29741e-6	5.12077e-4	1.78149e-4
chr11	63756111	63756170	11976827	0	+	0.440678	(0.42,0.455]	chr11	918376	1	CDS	CDS:EXON_MRNA:INTRON	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	214	2	3.92134	5.0129649999999994	6.10459	3.22308e-7	1e-12	1.70564e-5	2.25522e-10
chr9	35066745	35066817	10638185	0	-	0.527778	(0.49,0.53]	chr9	804561	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680731.1:ENST00000681562.1:ENST00000681845.1:ENST00000680079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.20376	5.0129649999999994	5.82217	1.43152e-5	1.36598e-6	4.04062e-4	5.18684e-5
chr15	68779500	68779596	15359852	0	-	0.510417	(0.49,0.53]	chr15	1213200	11	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000486054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	4.37423	5.01276	5.65129	4.77238e-6	3.38975e-6	1.49327e-4	1.23071e-4
chr11	112352608	112352662	12604302	0	-	0.407407	(0.39,0.42]	chr11	977388	2	EXON_SMALL	EXON_SMALL	RNU6-44P	ENSG00000206772.1	ENST00000384045.1	snRNA	snRNA	snRNA	snRNA	1	52	2	3.76141	5.012475	6.26354	2.14058e-4	3.79414e-8	0.00359478	2.43463e-6
chr8	58581833	58581926	9351272	0	+	0.376344	(0.36,0.39]	chr8	715167	2	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	4.56345	5.012185	5.46092	1.14615e-6	4.88857e-10	4.93609e-5	5.56818e-8
chr19	49673697	49673777	17372005	0	+	0.5125	(0.49,0.53]	chr19	1443476	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2:ENST00000594793.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.94363	5.0121199999999995	5.08061	2.3417e-4	1.00361e-4	0.00355764	0.00196575
chr2	20218607	20218707	2540536	0	-	0.5	(0.49,0.53]	chr2	228469	128	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.94363	5.0121199999999995	5.08061	2.3417e-4	1.00361e-4	0.00355764	0.00196575
chr6	30591065	30591157	7111582	0	+	0.51087	(0.49,0.53]	chr6	544897	5	UTR3	UTR3:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.99034	5.012074999999999	5.03381	1.6002e-4	1.49689e-4	0.00286408	0.0024973
chr9	129003385	129003454	10482816	0	+	0.507246	(0.49,0.53]	chr9	791162	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.99034	5.012074999999999	5.03381	1.6002e-4	1.49689e-4	0.00286408	0.0024973
chr19	43774276	43774362	17580625	0	-	0.604651	(0.59,1]	chr19	1479122	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000599720.5:ENST00000601549.2:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	84	2	3.97118	5.01207	6.05296	1.3379e-4	1.41714e-5	0.00229039	4.01358e-4
chr3	98588712	98588783	4319630	0	-	0.422535	(0.42,0.455]	chr3	360271	1	CDS	CDS:EXON_MRNA	CPOX	ENSG00000080819.9	ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding	5	110	2	3.83991	5.011435	6.18296	3.5781e-8	3.08213e-8	2.56228e-6	2.04741e-6
chr4	48420272	48420347	4826800	0	+	0.506667	(0.49,0.53]	chr4	397740	3	CDS	CDS:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.7007	5.011245000000001	5.32179	2.63311e-5	4.46291e-7	6.73425e-4	2.00907e-5
chr1	201143819	201143890	1446581	0	-	0.521127	(0.49,0.53]	chr1	145196	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	179	2	4.31392	5.01108	5.70824	1.55447e-7	1e-12	9.20055e-6	2.25522e-10
chr7	97859305	97859398	8940688	0	-	0.408602	(0.39,0.42]	chr7	682267	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	75	2	4.49324	5.01064	5.52804	0.00108192	2.96346e-10	0.0124943	3.5664e-8
chr3	39410753	39410835	3423823	0	+	0.560976	(0.53,0.59]	chr3	298005	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	214	2	4.75727	5.010175	5.26308	2.47529e-10	4.12673e-11	3.37701e-8	6.20846e-9
chr16	74491143	74491215	16031405	0	-	0.541667	(0.53,0.59]	chr16	1287351	3	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.5586	5.010120000000001	5.46164	0.00161229	2.11519e-5	0.0169168	5.06522e-4
chr10	93284373	93284465	11625744	0	-	0.445652	(0.42,0.455]	chr10	884964	5	EXON_PSEUDO	EXON_PSEUDO	RPL17P34	ENSG00000213432.2	ENST00000394133.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.40276	5.00995	5.61714	0.0017618	4.98624e-6	0.0180053	1.54467e-4
chr5	173034515	173034608	6388363	0	+	0.44086	(0.42,0.455]	chr5	496198	2	UTR3	UTR3:EXON_MRNA	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.40276	5.00995	5.61714	0.0017618	4.98624e-6	0.0180053	1.54467e-4
chr12	7817830	7817898	13192387	0	-	0.602941	(0.59,1]	chr12	1033381	1	CDS	CDS:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.82325	5.009865	5.19648	0.002381	7.35336e-4	0.0216895	0.00921643
chr16	1459917	1460017	15821131	0	-	0.68	(0.59,1]	chr16	1261250	1	SS5_PROX	SS5_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.82325	5.009865	5.19648	0.002381	7.35336e-4	0.0216895	0.00921643
chr19	19132656	19132754	17502192	0	-	0.653061	(0.59,1]	chr19	1468678	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587096.5:ENST00000590216.6:ENST00000592369.1:ENST00000587915.1:ENST00000592147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.82325	5.009865	5.19648	0.002381	7.35336e-4	0.0216895	0.00921643
chr20	397076	397172	17644590	0	+	0.489583	(0.455,0.49]	chr20	1491383	5	UTR3	UTR3:EXON_MRNA	TRIB3	ENSG00000101255.12	ENST00000217233.9	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.87186	5.0098	5.14774	2.33781e-4	7.45457e-5	0.00385436	0.00142165
chr2	211776049	211776149	3149815	0	-	0.4	(0.39,0.42]	chr2	278203	250	INTRON	INTRON	ERBB4	ENSG00000178568.15	ENST00000342788.9:ENST00000402597.6:ENST00000436443.5:ENST00000484594.5:ENST00000260943.10:ENST00000484474.1:ENST00000435846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	62	2	3.71793	5.0097249999999995	6.30152	1.58821e-5	2.78542e-8	4.4403e-4	1.87494e-6
chr18	9955688	9955786	16756147	0	+	0.346939	(0.33,0.36]	chr18	1381801	16	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.6856	5.00952	5.33344	3.92435e-4	1.82386e-5	0.00583618	4.52248e-4
chr17	38755936	38755990	16217804	0	+	0.462963	(0.455,0.49]	chr17	1310743	2	CDS	CDS:EXON_MRNA	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	4.22752	5.009475	5.79143	1.24055e-5	8.96581e-7	3.28918e-4	4.03386e-5
chr9	124415425	124415444	10850143	0	-	0.473684	(0.455,0.49]	chr9	821926	1	UTR5	UTR5:EXON_MRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.50805	5.00924	5.51043	0.00122223	9.08728e-6	0.0135383	2.53877e-4
chr19	3985377	3985380	17430280	0	-	0.333333	(0.33,0.36]	chr19	1454744	1	CDS_START	CDS_START:CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000594885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.33896	5.0091149999999995	5.67927	0.00182033	1.93383e-6	0.0183913	6.97773e-5
chr1	6199573	6199595	842437	0	-	0.636364	(0.59,1]	chr1	84907	1	UTR5	UTR5:EXON_MRNA:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000497965.5:ENST00000471204.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding	20	1449	2	4.63587	5.008985	5.3821	2.02793e-10	1e-12	2.81636e-8	2.25522e-10
chr11	18509541	18509603	12302829	0	-	0.532258	(0.53,0.59]	chr11	951508	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000543054.5:ENST00000543087.5:ENST00000544804.5:ENST00000438874.6:ENST00000542488.5:ENST00000535077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.43863	5.00897	5.57931	0.00254763	1.05602e-5	0.0233955	2.89015e-4
chr4	153693840	153693940	5178064	0	+	0.59	(0.53,0.59]	chr4	418237	53	INTRON	INTRON	TLR2	ENSG00000137462.9	ENST00000646900.1:ENST00000646219.1:ENST00000642580.1:ENST00000642700.2:ENST00000643501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.43863	5.00897	5.57931	0.00254763	1.05602e-5	0.0233955	2.89015e-4
chr5	80637882	80637945	6667470	0	-	0.380952	(0.36,0.39]	chr5	514729	1	CDS	CDS:EXON_MRNA:INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.98743	5.008815	5.0302	1.15931e-4	8.82225e-5	0.00204552	0.00178337
chr1	25352881	25352974	104211	0	+	0.419355	(0.39,0.42]	chr1	12218	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	164	2	4.92238	5.008625	5.09487	7.25001e-11	2.58582e-11	1.1209e-8	4.06006e-9
chr17	13925721	13925821	16452639	0	-	0.52	(0.49,0.53]	chr17	1342990	266	INTRON	INTRON	COX10-AS1	ENSG00000236088.10	ENST00000582752.7:ENST00000662986.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	3.51981	5.008405	6.497	6.88328e-4	7.74861e-9	0.00876781	6.22462e-7
chr13	39225630	39225730	13976669	0	-	0.42	(0.39,0.42]	chr13	1096653	51	INTRON	INTRON	LHFPL6	ENSG00000183722.9	ENST00000648377.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	35	2	4.14886	5.00816	5.86746	0.00415881	7.74696e-7	0.0325842	3.2172e-5
chr4	139703454	139703530	5129532	0	+	0.434211	(0.42,0.455]	chr4	415331	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	4.93872	5.008039999999999	5.07736	5.07972e-8	2.03293e-8	3.4372e-6	1.42506e-6
chr2	174720071	174720153	2221019	0	+	0.451219	(0.42,0.455]	chr2	203051	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC018890.6:H3P6	ENSG00000236449.2:ENSG00000235655.3	ENST00000442996.1:ENST00000369387.4	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	113	2	4.60138	5.00767	5.41396	1.3802e-8	6.27361e-10	1.0254e-6	7.59962e-8
chr2	178260365	178260465	2232260	0	+	0.29	[0,0.29]	chr2	203694	295	INTRON	INTRON	OSBPL6	ENSG00000079156.17	ENST00000359685.7:ENST00000392505.6:ENST00000477646.1:ENST00000357080.8:ENST00000190611.9:ENST00000409045.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.75921	5.00719	5.25517	2.77035e-4	2.33041e-5	0.00444204	5.51886e-4
chr7	29672034	29672134	8747594	0	-	0.27	[0,0.29]	chr7	667385	203	INTRON	INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1:ENST00000426767.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	24	2	4.75921	5.00719	5.25517	2.77035e-4	2.33041e-5	0.00444204	5.51886e-4
chr1	156211022	156211120	486696	0	+	0.397959	(0.39,0.42]	chr1	51420	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A44	ENSG00000160785.14	ENST00000423538.6:ENST00000684582.1:ENST00000359511.5:ENST00000469537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	4.42473	5.006880000000001	5.58903	5.14263e-6	3.06235e-6	1.58468e-4	1.13887e-4
chr1	19223395	19223482	877178	0	-	0.54023	(0.53,0.59]	chr1	90441	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000486405.1:ENST00000494770.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	4.03453	5.0065349999999995	5.97854	4.6e-5	7.61837e-7	9.56296e-4	3.51585e-5
chr13	20962096	20962195	13633284	0	+	0.585859	(0.53,0.59]	chr13	1074745	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP54	ENSG00000213621.3	ENST00000454001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	60	2	4.31894	5.006525	5.69411	7.82085e-6	5.01544e-6	2.24148e-4	1.7067e-4
chr12	124431386	124431485	13598733	0	-	0.494949	(0.49,0.53]	chr12	1071596	2	INTRON	INTRON	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000429285.6:ENST00000458234.5:ENST00000420698.5:ENST00000542927.5:ENST00000448008.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.84744	5.006505	5.16557	3.70203e-4	6.36135e-5	0.00515475	0.00136069
chr9	76549281	76549379	10694471	0	-	0.5	(0.49,0.53]	chr9	809432	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP87	ENSG00000219149.4	ENST00000441480.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.84744	5.006505	5.16557	3.70203e-4	6.36135e-5	0.00515475	0.00136069
chr1	155253678	155253732	1307247	0	-	0.5	(0.49,0.53]	chr1	132072	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM189B	ENSG00000160767.21	ENST00000361361.7:ENST00000350210.6:ENST00000368368.7:ENST00000621094.4:ENST00000487649.5:ENST00000491082.1:ENST00000472550.5:ENST00000481822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.89405	5.006365000000001	5.11868	2.57983e-4	9.66505e-5	0.00419998	0.00175267
chr6	49636812	49636839	7729923	0	-	0.518519	(0.49,0.53]	chr6	592994	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.89405	5.006365000000001	5.11868	2.57983e-4	9.66505e-5	0.00419998	0.00175267
chr17	44353029	44353106	16234945	0	+	0.441558	(0.42,0.455]	chr17	1314590	4	UTR3	UTR3:EXON_MRNA	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.80064	5.0062549999999995	5.21187	3.0479e-4	5.5797e-5	0.00472028	0.00112719
chr3	128067516	128067612	3725163	0	+	0.489583	(0.455,0.49]	chr3	318503	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	152	2	4.98357	5.0060400000000005	5.02851	3.60162e-8	9.03499e-12	2.56668e-6	1.58863e-9
chr17	44349488	44349551	16234892	0	+	0.603175	(0.59,1]	chr17	1314555	2	CDS	CDS:EXON_MRNA	GRN	ENSG00000030582.18	ENST00000588170.5:ENST00000589536.5:ENST00000587518.5:ENST00000588143.5:ENST00000593167.5:ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000592783.5:ENST00000591740.5:ENST00000592323.5:ENST00000589265.5:ENST00000587958.1:ENST00000586782.5:ENST00000639447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	4.21445	5.005995	5.79754	4.37862e-5	3.712e-5	0.00101529	8.06532e-4
chr7	75980434	75980530	8342121	0	+	0.614583	(0.59,1]	chr7	636159	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000394893.5:ENST00000414186.5:ENST00000432753.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000426184.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.8973	5.005785	6.11427	2.15122e-4	6.89731e-6	0.00360503	0.00020353099999999999
chr19	19130231	19130307	17502165	0	-	0.592105	(0.59,1]	chr19	1468669	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000591031.6:ENST00000590216.6:ENST00000592369.1:ENST00000587915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	115	2	4.02461	5.005745	5.98688	2.00143e-5	5.32274e-6	5.35199e-4	1.62953e-4
chr1	121118360	121118443	1259541	0	-	0.614458	(0.59,1]	chr1	123390	3	EXON_PSEUDO	EXON_PSEUDO	H3P4	ENSG00000213244.3	ENST00000401004.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	142	2	3.77491	5.00517	6.23543	4.80157e-6	3.47367e-6	1.65008e-4	1.13687e-4
chr7	92127567	92127631	8922246	0	-	0.375	(0.36,0.39]	chr7	680665	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.33241	5.005	6.67759	0.00193631	7.69366e-10	0.0192272	8.30244e-8
chr17	81574774	81574873	16708366	0	-	0.535354	(0.53,0.59]	chr17	1377478	23	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.47419	5.00475	6.53531	8.75273e-4	1.20872e-8	0.0106963	9.09817e-7
chr6	49605770	49605812	7729598	0	-	0.52381	(0.49,0.53]	chr6	592930	1	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	4.54668	5.00471	5.46274	1.13094e-5	1.40979e-6	3.3464e-4	5.33111e-5
chr1	147178746	147178841	453648	0	+	0.347368	(0.33,0.36]	chr1	45093	10	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	121	2	3.60198	5.00428	6.40658	6.01238e-4	1e-12	0.00811676	2.25522e-10
chrX	37727816	37727907	18656807	0	+	0.483516	(0.455,0.49]	chrX	1591367	3	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.61387	5.00384	6.39381	2.88949e-5	1.45725e-8	7.23839e-4	1.07259e-6
chr22	19041136	19041215	18430074	0	-	0.56962	(0.53,0.59]	chr22	1570347	2	CDS	CDS:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.99191	5.003410000000001	6.01491	5.86351e-5	6.18274e-7	0.00129243	2.65059e-5
chr11	44124886	44124984	11926376	0	+	0.520408	(0.49,0.53]	chr11	911544	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	3.02891	5.00338	6.97785	8.23332e-4	1.04183e-10	0.0102121	1.40718e-8
chr15	44715662	44715701	14899958	0	+	0.461538	(0.455,0.49]	chr15	1171705	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000560681.1:ENST00000559220.1:ENST00000561139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	280	2	4.21722	5.0031300000000005	5.78904	1.51771e-11	4.35152e-12	2.75181e-9	8.34616e-10
chr1	201007774	201007872	1445395	0	-	0.459184	(0.455,0.49]	chr1	144921	17	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.10535	5.00294	5.90053	0.0064531	4.02654e-7	0.0450905	2.05231e-5
chr1	202943863	202943945	1453212	0	-	0.47561	(0.455,0.49]	chr1	146065	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10:ENST00000367254.7:ENST00000417068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	183	2	4.853	5.002715	5.15243	1.03362e-9	2.38332e-12	1.1759e-7	4.87681e-10
chrX	47210841	47210916	18686877	0	+	0.573333	(0.53,0.59]	chrX	1593251	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.62204	5.00192	6.3818	4.3021e-4	4.09818e-8	0.00620274	2.59819e-6
chr13	22696206	22696298	13928528	0	-	0.478261	(0.455,0.49]	chr13	1092772	3	EXON_PSEUDO	EXON_PSEUDO	FTH1P7	ENSG00000232187.1	ENST00000450676.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	116	2	3.96464	5.0017499999999995	6.03886	6.27408e-5	1.77458e-12	0.00135074	3.76822e-10
chr8	128041168	128041266	9615218	0	+	0.428571	(0.42,0.455]	chr8	728683	9	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.77666	5.001705	6.22675	1.85215e-4	2.47854e-8	0.00296795	1.84654e-6
chr1	25408775	25408869	904262	0	-	0.585106	(0.53,0.59]	chr1	94045	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1:ENST00000495048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.66348	5.00148	5.33948	0.00107799	4.08763e-5	0.0118238	9.64741e-4
chr11	57491292	57491362	12394741	0	-	0.585714	(0.53,0.59]	chr11	958749	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000529452.5:ENST00000533515.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.66936	5.001435000000001	5.33351	0.00103174	4.35359e-5	0.0121443	0.00091744700000000005
chr5	176509195	176509293	6402700	0	+	0.540816	(0.53,0.59]	chr5	497383	24	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.66936	5.001435000000001	5.33351	0.00103174	4.35359e-5	0.0121443	0.00091744700000000005
chr11	66367519	66367548	12424325	0	-	0.482759	(0.455,0.49]	chr11	964643	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.20189	5.00095	5.80001	0.00397662	1.35407e-6	0.0322851	5.16241e-5
chr2	70277208	70277292	1878774	0	+	0.47619	(0.455,0.49]	chr2	177455	3	CDS	CDS:UTR3:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000433351.7:ENST00000264441.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.20189	5.00095	5.80001	0.00397662	1.35407e-6	0.0322851	5.16241e-5
chr9	129086708	129086798	10483312	0	+	0.544444	(0.53,0.59]	chr9	791315	1	CDS	CDS:UTR3:EXON_MRNA	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12:ENST00000412363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.16383	5.00057	5.8373100000000004	0.00659193	2.06883e-6	0.0454205	7.35008e-5
chr2	60735076	60735167	2685797	0	-	0.285714	[0,0.29]	chr2	239742	3	EXON_PSEUDO	EXON_PSEUDO	ATP1B3P1	ENSG00000271707.1	ENST00000605365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.36183	5.00015	5.63847	0.00170062	1.9181e-6	0.01759	6.93031e-5
chr1	10400483	10400572	39710	0	+	0.52809	(0.49,0.53]	chr1	4780	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000477958.5:ENST00000483936.5:ENST00000465632.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	4.58452	5.00006	5.4156	1.84143e-5	9.98532e-7	4.53637e-4	4.42534e-5
chr7	152259415	152259515	9136194	0	-	0.5	(0.49,0.53]	chr7	698537	63	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	4.58452	5.00006	5.4156	1.84143e-5	9.98532e-7	4.53637e-4	4.42534e-5
chr8	11849135	11849228	9699256	0	-	0.688172	(0.59,1]	chr8	734826	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	98	2	3.17616	4.999925	6.82369	0.00434232	9.07221e-8	0.0339139	5.13369e-6
chr11	47797778	47797831	12389536	0	-	0.415094	(0.39,0.42]	chr11	957439	1	CDS	CDS:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.89196	4.999785	5.10761	2.62166e-4	5.12039e-5	0.0039188	0.00114668
chr7	150951544	150951641	9128672	0	-	0.618557	(0.59,1]	chr7	697474	2	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	143	2	2.53147	4.999535	7.4676	0.00807544	9.80416e-10	0.0531324	1.03027e-7
chr17	62516498	62516588	16629951	0	-	0.466667	(0.455,0.49]	chr17	1367140	3	EXON_PSEUDO	EXON_PSEUDO	RP11-464D20.2	ENSG00000239246.3	ENST00000460492.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	100	2	3.08419	4.99942	6.91465	1.49122e-5	5.63631e-11	3.82065e-4	8.93906e-9
chr6	69737941	69738015	7788385	0	-	0.378378	(0.36,0.39]	chr6	596360	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.66978	4.9991449999999995	6.32851	3.25031e-4	4.75446e-9	0.00463603	4.42746e-7
chr6	7885960	7886043	7588017	0	-	0.421687	(0.42,0.455]	chr6	578868	1	CDS	CDS:UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2:ENST00000473453.2:ENST00000475802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	131	2	4.91213	4.999055	5.08598	1.75074e-4	5.32441e-12	0.00306313	9.95493e-10
chr6	122454150	122454230	7923829	0	-	0.3375	(0.33,0.36]	chr6	606834	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	5	144	2	4.4784	4.99899	5.51958	2.19272e-9	1e-12	2.26845e-7	2.25522e-10
chr19	10923290	10923390	17460890	0	-	0.64	(0.59,1]	chr19	1461237	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	YIPF2	ENSG00000130733.11	ENST00000253031.6:ENST00000586748.6:ENST00000592646.5:ENST00000589971.1:ENST00000591872.1:ENST00000590329.5:ENST00000586575.5	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	4.86977	4.998915	5.12806	0.00246014	1.40673e-7	0.0230058	7.49861e-6
chr19	53386308	53386403	17386159	0	+	0.410526	(0.39,0.42]	chr19	1446352	15	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	ZNF525:CTD-3141N22.1	ENSG00000203326.12:ENSG00000241069.1	ENST00000474037.6:ENST00000467003.1:ENST00000475179.5:ENST00000593918.1:ENST00000459631.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:transcribed_processed_pseudogene	0	38	2	3.93996	4.9984850000000005	6.05701	0.00841622	1.91744e-7	0.054565	9.81202e-6
chr1	54047266	54047319	1027337	0	-	0.339623	(0.33,0.36]	chr1	106641	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.93997	4.997995	6.05602	9.37165e-5	1.18608e-7	0.00186979	6.47377e-6
chr19	15834804	15834899	17246584	0	+	0.526316	(0.49,0.53]	chr19	1422765	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644502.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	5	193	2	4.86313	4.9977350000000005	5.13234	1.12028e-9	3.50264e-12	1.26546e-7	6.88456e-10
chr11	62789116	62789210	11974105	0	+	0.574468	(0.53,0.59]	chr11	917978	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM179B	ENSG00000185475.11	ENST00000333449.9:ENST00000533861.5:ENST00000532586.1:ENST00000532345.1:ENST00000526546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.95233	4.997655	5.04298	3.02711e-4	1.91383e-4	0.00439897	0.0032874
chr12	57750922	57751002	13357768	0	-	0.5375	(0.53,0.59]	chr12	1053025	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5:ENST00000551800.5:ENST00000552254.5:ENST00000551706.1:ENST00000552388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.95233	4.997655	5.04298	3.02711e-4	1.91383e-4	0.00439897	0.0032874
chr6	170657128	170657228	7556956	0	+	0.58	(0.53,0.59]	chr6	576995	167	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.95233	4.997655	5.04298	3.02711e-4	1.91383e-4	0.00439897	0.0032874
chr2	131264583	131264683	2066931	0	+	0.56	(0.53,0.59]	chr2	194203	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PLEKHB2:POTEE	ENSG00000115762.16:ENSG00000188219.15	ENST00000404460.5:ENST00000683005.1:ENST00000356920.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.95825	4.99765	5.03705	2.87508e-4	0.00020199200000000001	0.00457439	0.00317801
chr12	7921412	7921512	13193177	0	-	0.53	(0.49,0.53]	chr12	1033482	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	134	2	4.74284	4.99685	5.25086	2.96405e-7	2.86495e-11	1.59277e-5	4.4541e-9
chr11	17311211	17311283	11827339	0	+	0.388889	(0.36,0.39]	chr11	905376	1	CDS	CDS:UTR3:EXON_MRNA	NUCB2	ENSG00000070081.17	ENST00000646648.1:ENST00000533773.5:ENST00000529010.6:ENST00000323688.10:ENST00000458064.6:ENST00000622082.4:ENST00000527580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.42503	4.996824999999999	5.56862	0.00133228	4.90567e-6	0.0144372	1.526e-4
chr5	150661250	150661338	6296317	0	+	0.590909	(0.59,1]	chr5	491504	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MYOZ3	ENSG00000164591.14	ENST00000297130.4:ENST00000517768.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.2353	4.99647	5.75764	0.0165254	4.53637e-5	0.0873033	9.4617e-4
chr16	23466991	23467091	15894373	0	-	0.4	(0.39,0.42]	chr16	1272095	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.98825	4.99608	5.00391	1.62756e-4	9.12714e-5	0.00266622	0.00182992
chr6	17616526	17616610	7618885	0	-	0.571429	(0.53,0.59]	chr6	580516	1	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.8188	4.99591	6.17302	1.54941e-4	1.98983e-7	0.0028049	1.01095e-5
chr1	23691741	23691823	98618	0	+	0.621951	(0.59,1]	chr1	11403	1	UTR5	UTR5:EXON_MRNA	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	805	2	4.79665	4.99583	5.19501	2.12856e-10	6.04972e-12	2.94241e-8	1.11321e-9
chr1	21842071	21842142	890825	0	-	0.676056	(0.59,1]	chr1	92316	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.97118	4.99574	6.0203	1.3379e-4	1.68221e-5	0.00229039	4.64895e-4
chr1	160354117	160354203	496765	0	+	0.581395	(0.53,0.59]	chr1	53487	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	3.70952	4.99535	6.28118	2.03311e-6	8.87941e-8	8.03067e-5	5.04867e-6
chr9	129085517	129085616	10483298	0	+	0.575758	(0.53,0.59]	chr9	791307	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12:ENST00000412363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.5393	4.995265	6.45123	6.46017e-4	2.24134e-8	0.00799743	1.68827e-6
chr10	46003218	46003318	11026551	0	+	0.48	(0.455,0.49]	chr10	839310	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.46389	4.995235	6.52658	9.14164e-4	4.72215e-9	0.0110519	4.04884e-7
chr1	201520163	201520260	658272	0	+	0.525773	(0.49,0.53]	chr1	66002	16	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-134G8.7:RPS10P7	ENSG00000224536.2:ENSG00000223396.4	ENST00000454651.2:ENST00000441932.1:ENST00000648727.1:ENST00000482594.2	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	0	31	2	4.79086	4.994845	5.19883	4.20783e-4	6.30063e-5	0.00611538	0.00124286
chr14	24189710	24189808	14534205	0	-	0.520408	(0.49,0.53]	chr14	1139690	3	CDS	CDS:UTR3:EXON_MRNA	RP11-468E2.2:TM9SF1:RP11-468E2.1	ENSG00000259522.3:ENSG00000100926.15:ENSG00000254692.1	ENST00000561419.1:ENST00000261789.9:ENST00000528669.5:ENST00000530611.1:ENST00000529332.5:ENST00000524835.5:ENST00000532632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.79086	4.994845	5.19883	4.20783e-4	6.30063e-5	0.00611538	0.00124286
chr17	82764747	82764839	16385491	0	+	0.456522	(0.455,0.49]	chr17	1332894	3	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.6621	4.994845	5.32759	7.84472e-4	1.92345e-5	0.00927662	5.18397e-4
chr11	118755401	118755452	12625485	0	-	0.45098	(0.42,0.455]	chr11	979534	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	3.54395	4.994675	6.4454	6.53258e-6	1.07351e-8	2.12139e-4	8.24229e-7
chr3	161238729	161238826	3857801	0	+	0.329897	(0.29,0.33]	chr3	327626	1	CDS	CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.88207	4.99456	6.10705	1.56259e-4	6.22381e-8	0.00282486	3.71811e-6
chr9	14921906	14922005	10581564	0	-	0.363636	(0.36,0.39]	chr9	800961	10	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	171	2	4.72233	4.994555	5.26678	1.80377e-11	1.02823e-11	2.95513e-9	1.95601e-9
chr20	62278862	62278960	17861084	0	+	0.469388	(0.455,0.49]	chr20	1509921	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.76048	4.994210000000001	5.22794	3.99985e-4	4.80556e-5	0.00588767	9.91058e-4
chr1	151400049	151400118	471572	0	+	0.536232	(0.53,0.59]	chr1	48188	2	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.92573	4.993925	6.06212	8.62301e-5	4.23179e-7	0.00160749	2.1371e-5
chr12	79775237	79775336	13433697	0	-	0.383838	(0.36,0.39]	chr12	1057192	18	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.86603	4.993285	5.12054	1.68962e-4	7.15553e-5	0.00297945	0.00137393
chr7	44579578	44579628	8800228	0	-	0.58	(0.53,0.59]	chr7	671337	1	CDS	CDS:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.86232	4.992665000000001	5.12301	4.57805e-4	1.2852e-4	0.00608573	0.00241206
chr11	6617625	6617685	12249966	0	-	0.533333	(0.53,0.59]	chr11	946865	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	144	2	4.16026	4.992625	5.82499	6.52435e-7	3.26895e-11	2.7837e-5	5.53768e-9
chr1	205714111	205714210	1461996	0	-	0.383838	(0.36,0.39]	chr1	147460	14	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	8	215	2	4.44772	4.992205	5.53669	6.08077e-11	1e-12	8.74833e-9	2.46312e-10
chr11	57409257	57409298	12394447	0	-	0.512195	(0.49,0.53]	chr11	958635	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.97278	4.9922	6.01162	2.29577e-6	3.55916e-7	8.86852e-5	1.64926e-5
chr3	141921976	141922063	3790154	0	+	0.287356	[0,0.29]	chr3	323500	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5:ENST00000484727.1:ENST00000486782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	166	2	4.52788	4.99193	5.45598	4.13958e-12	1.7325e-12	7.97473e-10	4.00302e-10
chrX	47583415	47583515	18687887	0	+	0.65	(0.59,1]	chrX	1593552	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000441738.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	4.13851	4.991695	5.84488	5.66622e-5	4.10826e-5	0.00114182	9.68079e-4
chr12	51048300	51048356	12876032	0	+	0.5	(0.49,0.53]	chr12	1000549	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000551261.5:ENST00000546992.5:ENST00000548390.5:ENST00000548401.1:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	4.73676	4.991275	5.24579	4.073e-5	3.38109e-7	9.64741e-4	1.5857e-5
chr8	41581376	41581476	9303764	0	+	0.26	[0,0.29]	chr8	712098	24	INTRON	INTRON	GPAT4	ENSG00000158669.11	ENST00000521184.1:ENST00000520258.1:ENST00000396987.7:ENST00000519853.5:ENST00000520223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	3.91571	4.99108	6.06645	1.5798e-4	1e-12	0.00285004	2.25522e-10
chr10	537716	537816	11335903	0	-	0.46	(0.455,0.49]	chr10	864497	508	INTRON	INTRON	DIP2C	ENSG00000151240.17	ENST00000280886.12:ENST00000634311.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	3.81275	4.990615	6.16848	0.0138827	8.97995e-8	0.0760883	5.08654e-6
chr2	8770750	8770832	2504978	0	-	0.47561	(0.455,0.49]	chr2	225942	2	CDS	CDS:UTR3:EXON_MRNA	KIDINS220	ENSG00000134313.16	ENST00000569008.2:ENST00000496383.5:ENST00000256707.8:ENST00000473731.5:ENST00000488729.5:ENST00000489024.5:ENST00000319688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	3.81275	4.990615	6.16848	0.0138827	8.97995e-8	0.0760883	5.08654e-6
chr1	30931599	30931694	916270	0	-	0.347368	(0.33,0.36]	chr1	95957	2	UTR3	UTR3:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	4.12803	4.990465	5.8529	2.90032e-5	5.58947e-7	7.24986e-4	2.43789e-5
chr2	222919063	222919132	2406101	0	+	0.536232	(0.53,0.59]	chr2	216577	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000540115.1:ENST00000463813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	104	2	4.28673	4.99042	5.69411	5.01544e-6	1.92014e-8	1.7067e-4	1.36381e-6
chr8	15748374	15748465	9208625	0	+	0.417582	(0.39,0.42]	chr8	703447	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TUSC3	ENSG00000104723.21	ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000511783.2:ENST00000508446.1:ENST00000507316.1:ENST00000511342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	4.77636	4.990355	5.20435	2.91423e-5	2.28159e-7	7.26551e-4	1.13101e-5
chr11	61302581	61302666	12403911	0	-	0.576471	(0.53,0.59]	chr11	960180	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000540166.5:ENST00000538470.2:ENST00000679855.1:ENST00000539332.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	4.24099	4.99028	5.73957	1.28258e-5	3.90343e-6	3.70041e-4	1.26306e-4
chr1	147178556	147178651	453646	0	+	0.421053	(0.42,0.455]	chr1	45093	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	4	171	2	4.64877	4.99022	5.33167	5.54135e-7	1e-12	2.69297e-5	2.25522e-10
chr7	42924674	42924768	8791649	0	-	0.43617	(0.42,0.455]	chr7	670210	1	CDS	CDS:UTR3:EXON_MRNA	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	3.79714	4.99005	6.18296	9.32431e-7	3.5781e-8	3.77388e-5	2.56228e-6
chr8	124998904	124999004	9595350	0	+	0.64	(0.59,1]	chr8	727885	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.9413	4.98982	5.03834	0.00191468	0.00108238	0.0190905	0.0118355
chr19	814885	814983	17416699	0	-	0.622449	(0.59,1]	chr19	1451872	1	CDS	CDS:EXON_MRNA	PLPPR3	ENSG00000129951.19	ENST00000520876.8:ENST00000359894.6:ENST00000517665.2	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	4.90476	4.989644999999999	5.07453	0.00117617	6.19423e-7	0.0132131	2.65225e-5
chr7	15701672	15701752	8697891	0	-	0.475	(0.455,0.49]	chr7	664515	4	EXON_PSEUDO	EXON_PSEUDO	RPL36AP26	ENSG00000235828.5	ENST00000476382.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	153	2	4.91224	4.98953	5.06682	6.63701e-8	5.99609e-12	4.34166e-6	1.10392e-9
chr8	47794430	47794501	9815688	0	-	0.535211	(0.53,0.59]	chr8	742517	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	4.18373	4.989504999999999	5.79528	1.85867e-5	2.61912e-6	4.56627e-4	9.89086e-5
chr1	161523189	161523289	500585	0	+	0.5	(0.49,0.53]	chr1	54262	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000467525.5:ENST00000537821.2	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	2	127	2	3.83319	4.989105	6.14502	1.34601e-4	1e-12	0.00249552	2.25522e-10
chr11	57387533	57387633	12394217	0	-	0.55	(0.53,0.59]	chr11	958600	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	3.99819	4.988365	5.97854	0.0111308	7.61837e-7	0.0665375	3.51585e-5
chr6	3224850	3224946	7571560	0	-	0.645833	(0.59,1]	chr6	577827	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBB2B	ENSG00000137285.11	ENST00000680070.1:ENST00000681757.1:ENST00000681707.1:ENST00000259818.8:ENST00000473006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	155	2	3.55527	4.98836	6.42145	4.59667e-6	1.83275e-6	1.4449e-4	7.37353e-5
chr9	34087956	34088054	10634760	0	-	0.44898	(0.42,0.455]	chr9	803967	17	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.54792	4.988305	5.42869	9.66045e-4	1.60756e-5	0.0115185	4.07445e-4
chr20	34015289	34015389	17762002	0	+	0.31	(0.29,0.33]	chr20	1500082	208	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.80322	4.987695	5.17217	2.14303e-4	6.18376e-9	0.00359478	5.12571e-7
chr1	42757782	42757852	966547	0	-	0.5	(0.49,0.53]	chr1	101762	1	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.55929	4.987445	5.4156	0.00116196	1.84143e-5	0.0130851	4.53637e-4
chr18	35141241	35141338	16822726	0	+	0.494845	(0.49,0.53]	chr18	1387343	10	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.55929	4.987445	5.4156	0.00116196	1.84143e-5	0.0130851	4.53637e-4
chr3	184326880	184326931	3949269	0	+	0.529412	(0.49,0.53]	chr3	332462	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000448284.1:ENST00000466311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.55929	4.987445	5.4156	0.00116196	1.84143e-5	0.0130851	4.53637e-4
chr8	96879797	96879866	9502855	0	+	0.507246	(0.49,0.53]	chr8	722608	1	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.55929	4.987445	5.4156	0.00116196	1.84143e-5	0.0130851	4.53637e-4
chr1	44778685	44778779	174125	0	+	0.329787	(0.29,0.33]	chr1	22433	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPS8	ENSG00000142937.12	ENST00000396651.8:ENST00000372209.3:ENST00000485390.5:ENST00000464658.1:ENST00000474582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	4.55123	4.986655000000001	5.42208	5.31413e-6	1.75317e-8	1.7831e-4	1.26166e-6
chr1	38708930	38709028	144538	0	+	0.704082	(0.59,1]	chr1	18021	1	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	41	2	4.86977	4.9866150000000005	5.10346	0.00246014	8.40506e-4	0.0230058	0.00981548
chr19	47742661	47742755	17363617	0	+	0.62766	(0.59,1]	chr19	1441384	14	UTR3	UTR3:EXON_MRNA	EHD2	ENSG00000024422.12	ENST00000263277.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.86977	4.9866150000000005	5.10346	0.00246014	8.40506e-4	0.0230058	0.00981548
chr20	35393500	35393591	17953479	0	-	0.406593	(0.39,0.42]	chr20	1520773	9	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.67765	4.986335	5.29502	7.04737e-4	1.68146e-5	0.00848325	4.64895e-4
chr5	179963470	179963564	7003786	0	-	0.446809	(0.42,0.455]	chr5	536596	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RNF130	ENSG00000113269.14	ENST00000522208.6:ENST00000521389.6:ENST00000261947.4:ENST00000520911.5:ENST00000521901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.9566	4.98611	5.01562	2.10615e-4	1.01971e-4	0.00327655	0.0019861
chr11	18407662	18407757	11831569	0	+	0.347368	(0.33,0.36]	chr11	906046	4	UTR3	UTR3:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	39	875	2	4.66635	4.9847	5.30305	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	110450337	110450422	13537602	0	-	0.682353	(0.59,1]	chr12	1064902	1	EXON_MRNA	EXON_MRNA	ARPC3	ENSG00000111229.16	ENST00000475777.2	protein_coding	retained_intron	protein_coding	retained_intron	0	42	2	4.63106	4.9845299999999995	5.338	0.00537945	3.196e-4	0.0406564	0.00457916
chr11	56908892	56908991	11950302	0	+	0.30303	(0.29,0.33]	chr11	914330	40	INTRON	INTRON	FADS2B	ENSG00000274150.1	ENST00000611807.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	72	2	2.80161	4.984025	7.16644	0.00415667	2.58482e-12	0.0325842	5.24606e-10
chr16	68190950	68191041	15714914	0	+	0.428571	(0.42,0.455]	chr16	1251034	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.67981	4.983815	5.28782	5.38444e-4	3.65299e-5	0.00744072	7.95843e-4
chr20	35542863	35542941	17769319	0	+	0.525641	(0.49,0.53]	chr20	1501102	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000486268.5:ENST00000279052.10:ENST00000416206.5:ENST00000640748.1:ENST00000411577.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	69	2	3.67458	4.98379	6.293	1.89038e-5	4.1349e-8	5.12059e-4	2.61265e-6
chr10	73008221	73008292	11568240	0	-	0.394366	(0.39,0.42]	chr10	880433	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	4.63883	4.9836849999999995	5.32854	5.68159e-4	1e-12	0.0077844	2.25522e-10
chr12	113386936	113387012	13101720	0	+	0.552632	(0.53,0.59]	chr12	1022436	1	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.76633	4.9825800000000005	5.19883	6.98999e-4	8.7034e-5	0.00846751	0.00177086
chr2	219250745	219250844	3191522	0	-	0.585859	(0.53,0.59]	chr2	280988	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.77222	4.98255	5.19288	6.67251e-4	9.22873e-5	0.00867533	0.0016906
chr5	77785815	77785909	6050223	0	+	0.56383	(0.53,0.59]	chr5	474661	11	EXON_PSEUDO	EXON_PSEUDO	ACTBP2	ENSG00000213763.4	ENST00000515712.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.77222	4.98255	5.19288	6.67251e-4	9.22873e-5	0.00867533	0.0016906
chr7	151076099	151076186	8617540	0	+	0.574713	(0.53,0.59]	chr7	658390	2	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000469467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.77222	4.98255	5.19288	6.67251e-4	9.22873e-5	0.00867533	0.0016906
chr20	50192469	50192568	17814862	0	+	0.333333	(0.33,0.36]	chr20	1507017	5	UTR3	UTR3:EXON_MRNA	CEBPB	ENSG00000172216.6	ENST00000303004.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.76625	4.982505	5.19876	3.84608e-4	2.37278e-5	0.00531017	6.1689e-4
chr17	67737909	67737972	16332009	0	+	0.412698	(0.39,0.42]	chr17	1324878	2	CDS	CDS:UTR3:EXON_MRNA	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000577687.1:ENST00000583108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.14886	4.982385	5.81591	0.00415881	1.11558e-6	0.0325842	4.4003e-5
chr3	142511168	142511266	4488095	0	-	0.357143	(0.33,0.36]	chr3	373138	27	INTRON	INTRON	ATR	ENSG00000175054.16	ENST00000350721.9:ENST00000656590.1:ENST00000666943.1:ENST00000661310.1:ENST00000653868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.87765	4.9821	5.08655	2.2423e-4	4.6453e-5	0.00344776	0.00106753
chr16	14872233	14872329	15560992	0	+	0.447917	(0.42,0.455]	chr16	1231977	1	CDS	CDS:EXON_MRNA	NOMO1	ENSG00000103512.15	ENST00000287667.12:ENST00000620755.4:ENST00000610363.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	3.8515	4.981235	6.11097	0.0119089	1.55657e-7	0.0686664	8.1934e-6
chr1	32926314	32926413	131412	0	+	0.424242	(0.42,0.455]	chr1	16273	3	INTRON	INTRON	RP5-1174N9.3	ENSG00000287691.1	ENST00000661031.1	lncRNA	lncRNA	lncRNA	lncRNA	2	98	2	4.34333	4.98108	5.61883	5.37112e-6	1.41111e-10	1.79904e-4	1.83836e-8
chr8	143992936	143993032	9649814	0	+	0.552083	(0.53,0.59]	chr8	731413	2	UTR3	UTR3:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	125	2	3.82091	4.981015	6.14112	2.39342e-7	4.7275e-8	1.32863e-5	2.93425e-6
chr7	101215088	101215152	8953732	0	-	0.453125	(0.42,0.455]	chr7	684703	1	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000424135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	110	2	4.69697	4.980805	5.26464	4.48797e-9	3.91776e-9	4.20932e-7	3.44725e-7
chr22	19175854	19175946	18431151	0	-	0.576087	(0.53,0.59]	chr22	1570486	4	UTR3	UTR3:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	577	2	4.88441	4.980729999999999	5.07705	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	140567462	140567559	6255380	0	+	0.484536	(0.455,0.49]	chr5	487695	3	CDS	CDS:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	4.06083	4.9806799999999996	5.90053	3.56832e-5	4.02654e-7	7.81595e-4	2.05231e-5
chr21	34842699	34842799	18227291	0	-	0.47	(0.455,0.49]	chr21	1546914	77	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	4.22752	4.98057	5.73362	1.24055e-5	1.35346e-6	3.28918e-4	5.67444e-5
chrX	154435681	154435736	18917916	0	+	0.563636	(0.53,0.59]	chrX	1611927	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	95	2	3.08958	4.980555	6.87153	1.30551e-4	7.04289e-10	0.0024373	7.66658e-8
chr2	79568840	79568940	1906221	0	+	0.36	(0.33,0.36]	chr2	180068	437	INTRON	INTRON	CTNNA2	ENSG00000066032.19	ENST00000466387.5:ENST00000496558.5:ENST00000451966.5:ENST00000402739.9:ENST00000629316.2:ENST00000409971.6	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	4.52266	4.98049	5.43832	8.34989e-4	5.33271e-10	0.0102956	6.0171e-8
chr22	41459813	41459910	18519449	0	-	0.536082	(0.53,0.59]	chr22	1581202	2	UTR3	UTR3:EXON_MRNA	PHF5A	ENSG00000100410.8	ENST00000216252.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.43863	4.980155	5.52168	0.00254763	1.48967e-5	0.0233955	3.81697e-4
chr5	157931333	157931410	6936733	0	-	0.571429	(0.53,0.59]	chr5	531350	2	EXON_PSEUDO	EXON_PSEUDO	CTB-47B8.1	ENSG00000244331.1	ENST00000460082.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	35	2	4.43863	4.980155	5.52168	0.00254763	1.48967e-5	0.0233955	3.81697e-4
chr8	101199128	101199227	9976853	0	-	0.414141	(0.39,0.42]	chr8	752810	22	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5:ENST00000311212.9:ENST00000519744.5:ENST00000520498.1:ENST00000517844.5:ENST00000519103.1:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.77583	4.980135000000001	6.18444	1.05659e-5	7.14249e-8	3.15727e-4	4.18382e-6
chr1	35603266	35603366	938336	0	-	0.45	(0.42,0.455]	chr1	98693	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	170	2	4.80457	4.9800699999999996	5.15557	1.00014e-10	4.28105e-11	1.35982e-8	7.01331e-9
chr3	100387577	100387677	4325743	0	-	0.43	(0.42,0.455]	chr3	360616	2	INTRON	INTRON	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.75728	4.979979999999999	5.20268	5.3817e-4	3.59669e-5	0.00686676	8.71318e-4
chr21	33557155	33557235	18101229	0	+	0.45	(0.42,0.455]	chr21	1534533	1	CDS	CDS:EXON_MRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.40276	4.979889999999999	5.55702	0.0017618	7.30994e-6	0.0180053	2.13219e-4
chr17	73224774	73224874	16673952	0	-	0.54	(0.53,0.59]	chr17	1371851	117	INTRON	INTRON	FAM104A	ENSG00000133193.12	ENST00000405159.7:ENST00000403627.7:ENST00000583178.5:ENST00000580032.1:ENST00000581110.1:ENST00000579872.1:ENST00000583024.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	4.31894	4.979835	5.64073	7.82085e-6	7.00135e-6	2.25852e-4	2.24148e-4
chr1	236484334	236484434	769262	0	+	0.56	(0.53,0.59]	chr1	77526	18	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	7	224	2	4.14965	4.979645	5.80964	7.59044e-10	3.79275e-11	8.20883e-8	6.33012e-9
chrX	153720871	153720921	19273822	0	-	0.46	(0.455,0.49]	chrX	1637385	1	CDS	CDS:EXON_MRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1:ENST00000645802.1:ENST00000468947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	163	2	4.69219	4.97959	5.26699	2.79396e-9	3.14599e-11	2.79164e-7	4.84583e-9
chr1	224192331	224192378	728482	0	+	0.425532	(0.42,0.455]	chr1	73591	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000498813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.91213	4.979465	5.0468	1.75074e-4	1.33918e-4	0.00306313	0.00229039
chr11	64853534	64853634	12419937	0	-	0.42	(0.39,0.42]	chr11	963250	20	UTR3	UTR3:EXON_MRNA	EHD1	ENSG00000110047.18	ENST00000320631.8:ENST00000621096.4:ENST00000359393.6:ENST00000484846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.63883	4.97926	5.31969	5.68159e-4	2.68682e-5	0.0077844	6.19143e-4
chr16	28151364	28151463	15904045	0	-	0.40404	(0.39,0.42]	chr16	1273315	48	INTRON	INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000565284.5:ENST00000564337.5:ENST00000570294.5:ENST00000566175.1:ENST00000574435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.63883	4.97926	5.31969	5.68159e-4	2.68682e-5	0.0077844	6.19143e-4
chr16	75630422	75630508	16039096	0	-	0.453488	(0.42,0.455]	chr16	1288296	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	126	2	3.97694	4.97917	5.9814	2.22686e-6	3.61056e-12	8.65681e-5	7.06086e-10
chr1	153960690	153960754	1300333	0	-	0.578125	(0.53,0.59]	chr1	130747	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1:ENST00000413622.5:ENST00000417348.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.5586	4.9788	5.399	0.00161229	3.02387e-5	0.0169168	6.78876e-4
chr2	96292971	96293033	2790467	0	-	0.33871	(0.33,0.36]	chr2	248797	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.33896	4.97769	5.61642	0.00182033	2.97369e-6	0.0183913	9.99199e-5
chr2	135169257	135169352	2080908	0	+	0.336842	(0.33,0.36]	chr2	195211	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2:ENST00000497080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.33896	4.97769	5.61642	0.00182033	2.97369e-6	0.0183913	9.99199e-5
chr12	50656972	50657025	12873749	0	+	0.396226	(0.39,0.42]	chr12	1000223	1	EXON_SMALL	EXON_SMALL:INTRON	DIP2B:RNU6-238P	ENSG00000066084.13:ENSG00000200183.1	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1:ENST00000363313.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:retained_intron	0	30	2	4.49324	4.97694	5.46064	0.00108192	1.15573e-5	0.0124943	3.09736e-4
chr11	78069910	78069986	12477544	0	-	0.381579	(0.36,0.39]	chr11	970651	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.89918	4.976855	6.05453	1.0624e-4	1.53427e-7	0.00205241	8.08703e-6
chr12	45924900	45924987	13312668	0	-	0.436782	(0.42,0.455]	chr12	1043373	3	CDS	CDS:EXON_MRNA	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000465950.5:ENST00000549162.5:ENST00000547950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	3.88515	4.97684	6.06853	4.4354e-6	2.14495e-7	1.54303e-4	1.07721e-5
chr10	88820401	88820501	11177984	0	+	0.52	(0.49,0.53]	chr10	849604	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LIPM	ENSG00000173239.14	ENST00000404743.9:ENST00000539337.2	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.11892	4.976795	6.83467	0.00398244	3.95701e-10	0.0322851	4.60945e-8
chr7	107975049	107975098	8987757	0	-	0.489796	(0.455,0.49]	chr7	687692	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1:ENST00000393560.5:ENST00000439976.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.50805	4.976435	5.44482	0.00122223	1.36044e-5	0.0135383	3.54469e-4
chr6	122453769	122453838	7923824	0	-	0.42029	(0.42,0.455]	chr6	606830	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	6	173	2	4.3845	4.97598	5.56746	1.5582e-10	1.34464e-10	2.00453e-8	1.95584e-8
chr19	9820376	9820455	17223481	0	+	0.620253	(0.59,1]	chr19	1418083	4	EXON_PSEUDO	EXON_PSEUDO	RPL10P15	ENSG00000267119.1	ENST00000585756.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	46	2	4.2353	4.975949999999999	5.7166	0.0165254	5.56053e-5	0.0873033	0.0011271
chr7	75887991	75888077	8341278	0	+	0.662791	(0.59,1]	chr7	636082	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHBDD2	ENSG00000005486.17	ENST00000318622.8:ENST00000454791.1:ENST00000006777.11:ENST00000468304.1:ENST00000428119.1:ENST00000467406.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.2353	4.975949999999999	5.7166	0.0165254	5.56053e-5	0.0873033	0.0011271
chr11	71439014	71439083	12444442	0	-	0.434783	(0.42,0.455]	chr11	966986	3	CDS	CDS:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000525137.1:ENST00000682880.1:ENST00000527316.5:ENST00000534701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	155	2	4.49445	4.97588	5.45731	2.9607e-8	3.09419e-12	2.15925e-6	6.17214e-10
chr21	34843399	34843499	18227298	0	-	0.35	(0.33,0.36]	chr21	1546914	84	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	4.88443	4.975525	5.06662	8.34031e-8	1.70355e-8	4.7764e-6	1.3397e-6
chr17	43278168	43278267	16552705	0	-	0.666667	(0.59,1]	chr17	1358313	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.26354	4.975455	5.68737	0.0134233	8.79466e-5	0.0743429	0.00178337
chr6	27841961	27842061	7105203	0	+	0.35	(0.33,0.36]	chr6	543480	3	SS5_PROX	SS5_PROX:INTRON	H2BC15	ENSG00000233822.5	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	3.82754	4.975365	6.12319	7.00235e-7	2.40967e-8	2.94691e-5	1.80206e-6
chr10	64494168	64494268	11080206	0	+	0.39	(0.36,0.39]	chr10	842350	1772	INTRON	INTRON	RP11-170M17.1	ENSG00000228566.2	ENST00000654191.1:ENST00000660795.1	lncRNA	lncRNA	lncRNA	lncRNA	2	101	2	3.99	4.975045	5.96009	6.1616e-5	2.94664e-12	0.00133408	5.92184e-10
chr5	37333547	37333633	6540390	0	-	0.360465	(0.36,0.39]	chr5	506624	2	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.58747	4.97469	5.36191	6.55819e-4	1.79406e-5	0.00860229	4.45904e-4
chr1	84498398	84498473	1130730	0	-	0.36	(0.33,0.36]	chr1	112598	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	18	400	2	4.51528	4.974584999999999	5.43389	1e-12	1e-12	2.46312e-10	2.25522e-10
chrX	44741378	44741476	18677979	0	+	0.581633	(0.53,0.59]	chrX	1592581	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP61	ENSG00000214016.3	ENST00000412542.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	162	2	4.5262	4.974485	5.42277	2.24887e-9	1.40169e-9	2.13668e-7	1.52885e-7
chr6	28589421	28589518	7106804	0	+	0.484536	(0.455,0.49]	chr6	543824	3	EXON_LNCRNA	EXON_LNCRNA	RP5-1186N24.3	ENSG00000246350.1	ENST00000499525.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	3.24286	4.974085	6.70531	2.77105e-4	9.72532e-10	0.00444204	1.02291e-7
chr11	245639	245734	11756065	0	+	0.463158	(0.455,0.49]	chr11	897586	5	INTRON	INTRON	PSMD13	ENSG00000185627.18	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.97258	4.973915	4.97525	1.84876e-4	1.38474e-4	0.00296795	0.00254294
chr7	139423177	139423270	8566316	0	+	0.419355	(0.39,0.42]	chr7	653683	10	UTR3	UTR3:EXON_MRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000263545.7:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	82	2	4.78838	4.97378	5.15918	1.7675e-7	9.11314e-9	1.03066e-5	7.16729e-7
chr1	42926321	42926418	966970	0	-	0.546392	(0.53,0.59]	chr1	101864	11	UTR3	UTR3:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	3.32707	4.973605	6.62014	2.9609e-5	6.02789e-9	7.34242e-4	5.00481e-7
chr11	5342777	5342869	12241521	0	-	0.51087	(0.49,0.53]	chr11	946162	2	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	4.7007	4.973245	5.24579	4.073e-5	4.46291e-7	9.64741e-4	2.00907e-5
chrX	110173351	110173451	18820939	0	+	0.51	(0.49,0.53]	chrX	1603938	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	4.7007	4.973245	5.24579	4.073e-5	4.46291e-7	9.64741e-4	2.00907e-5
chr17	44074159	44074212	16234026	0	+	0.471698	(0.455,0.49]	chr17	1314317	1	CDS	CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000593115.1:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.63978	4.971845	5.30391	6.94032e-4	3.12735e-5	0.00876781	6.97306e-4
chr17	50133736	50133835	16584270	0	-	0.464646	(0.455,0.49]	chr17	1362799	1	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.63978	4.971845	5.30391	6.94032e-4	3.12735e-5	0.00876781	6.97306e-4
chr18	67375218	67375305	16933909	0	+	0.471264	(0.455,0.49]	chr18	1393545	2	EXON_PSEUDO	EXON_PSEUDO	RP11-563H6.1	ENSG00000265936.1	ENST00000579213.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.63978	4.971845	5.30391	6.94032e-4	3.12735e-5	0.00876781	6.97306e-4
chr9	128323442	128323514	10478069	0	+	0.458333	(0.455,0.49]	chr9	789860	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COQ4	ENSG00000167113.11	ENST00000609948.1:ENST00000608951.5:ENST00000300452.8:ENST00000372875.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.63978	4.971845	5.30391	6.94032e-4	3.12735e-5	0.00876781	6.97306e-4
chr14	30885795	30885881	14201261	0	+	0.465116	(0.455,0.49]	chr14	1112913	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.81624	4.971745	6.12725	1.48205e-4	1.23635e-7	0.00269793	6.7072e-6
chr20	58996672	58996736	18026087	0	-	0.484375	(0.455,0.49]	chr20	1527928	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000680156.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	86	2	4.20189	4.97145	5.74101	0.00397662	3.87814e-11	0.0322851	5.86228e-9
chr2	128174772	128174858	2060346	0	+	0.453488	(0.42,0.455]	chr2	193336	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	4.92694	4.97128	5.01562	1.01971e-4	7.19661e-8	0.0019861	4.21199e-6
chr11	61310356	61310418	12403997	0	-	0.564516	(0.53,0.59]	chr11	960204	2	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.30776	4.9712499999999995	5.63474	0.00407289	7.53339e-6	0.0324137	2.17987e-4
chr13	48261138	48261224	13724923	0	+	0.360465	(0.36,0.39]	chr13	1081345	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000650237.1:ENST00000463839.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.0322	4.971105	5.91001	0.00588589	4.5726e-7	0.0427941	2.05025e-5
chr17	64003726	64003810	16636189	0	-	0.642857	(0.59,1]	chr17	1368042	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5:ENST00000584084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.7151	4.970295	5.22549	0.00412279	5.13843e-4	0.0325842	0.00665221
chr16	21980591	21980645	15587004	0	+	0.537037	(0.53,0.59]	chr16	1235482	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000561798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	130	2	3.96058	4.9695599999999995	5.97854	7.61837e-7	1.37063e-8	3.51585e-5	1.01916e-6
chr1	111124811	111124881	1224017	0	-	0.385714	(0.36,0.39]	chr1	119667	2	CDS	CDS:EXON_MRNA:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000480600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.73346	4.96951	5.20556	3.2963e-4	4.46552e-5	0.00504024	9.34801e-4
chr12	123261639	123261735	13594893	0	-	0.385417	(0.36,0.39]	chr12	1070943	8	UTR3	UTR3:EXON_MRNA	CDK2AP1	ENSG00000111328.7	ENST00000652466.1:ENST00000618072.4:ENST00000261692.7:ENST00000535979.5:ENST00000538446.5:ENST00000542174.5:ENST00000544658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.73346	4.96951	5.20556	3.2963e-4	4.46552e-5	0.00504024	9.34801e-4
chr4	82866807	82866883	5496925	0	-	0.5	(0.49,0.53]	chr4	440271	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	4.22986	4.96945	5.70904	1.25249e-5	2.30382e-6	3.30689e-4	8.86852e-5
chr1	111118804	111118897	1223950	0	-	0.387097	(0.36,0.39]	chr1	119640	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000477588.5:ENST00000477769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	4.95118	4.969305	4.98743	8.82225e-5	5.05967e-8	0.00178337	3.11657e-6
chr15	90881580	90881679	15103378	0	+	0.707071	(0.59,1]	chr15	1188582	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.44671	4.969275	5.49184	0.00931497	1.61513e-4	0.0586162	0.00265627
chr9	129005710	129005776	10482844	0	+	0.606061	(0.59,1]	chr9	791173	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.44671	4.969275	5.49184	0.00931497	1.61513e-4	0.0586162	0.00265627
chr19	48923182	48923277	17367858	0	+	0.494737	(0.49,0.53]	chr19	1442160	9	UTR3	UTR3:EXON_MRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	82	2	3.71157	4.969115	6.22666	1.83225e-6	5.03459e-8	6.66083e-5	3.41647e-6
chr6	44229588	44229655	7161474	0	+	0.507463	(0.49,0.53]	chr6	553783	1	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000643869.1:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000645692.1:ENST00000642777.1:ENST00000647460.1:ENST00000646582.1:ENST00000645607.1:ENST00000643152.1:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	4.06787	4.968725	5.86958	1.16062e-6	7.54524e-7	4.53337e-5	3.49213e-5
chr10	110937058	110937145	11692544	0	-	0.482759	(0.455,0.49]	chr10	891865	6	EXON_PSEUDO	EXON_PSEUDO	RPL13AP6	ENSG00000234118.1	ENST00000430133.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	4.36307	4.968125	5.57318	0.00218641	6.11867e-6	0.0208941	1.83393e-4
chr16	15931995	15932094	15867424	0	-	0.484848	(0.455,0.49]	chr16	1268290	4	EXON_PSEUDO	EXON_PSEUDO	RPL15P20	ENSG00000215003.4	ENST00000482912.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	4.36307	4.968125	5.57318	0.00218641	6.11867e-6	0.0208941	1.83393e-4
chr5	74713570	74713635	6036600	0	+	0.461538	(0.455,0.49]	chr5	473471	2	CDS	CDS:EXON_MRNA	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000261416.12:ENST00000504459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.36307	4.968125	5.57318	0.00218641	6.11867e-6	0.0208941	1.83393e-4
chr7	103491952	103492026	8963160	0	-	0.459459	(0.455,0.49]	chr7	686083	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.36307	4.968125	5.57318	0.00218641	6.11867e-6	0.0208941	1.83393e-4
chr6	85572136	85572215	7825357	0	-	0.443038	(0.42,0.455]	chr6	599521	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	4.64796	4.967895	5.28783	2.17539e-5	6.51077e-7	5.73422e-4	2.77961e-5
chr7	131414810	131414910	8534731	0	+	0.3	(0.29,0.33]	chr7	651645	1	SS5_PROX	SS5_PROX:INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	90	2	4.92048	4.96788	5.01528	7.83331e-8	1.83089e-10	5.03126e-6	2.32109e-8
chr11	96341437	96341526	12087058	0	+	0.561798	(0.53,0.59]	chr11	931548	1	EXON_SMALL	EXON_SMALL:PRIMIRNA	MIR1260B	ENSG00000266192.3	ENST00000582890.3	miRNA	miRNA	miRNA	miRNA:primary_miRNA	5	284	2	4.02165	4.96785	5.91405	1.81563e-6	1e-12	7.32965e-5	2.25522e-10
chr11	119020201	119020253	12161679	0	+	0.480769	(0.455,0.49]	chr11	937586	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000528230.5:ENST00000447216.2:ENST00000525079.5:ENST00000533012.1:ENST00000533149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.77318	4.967665	5.16215	4.7888e-4	5.04348e-5	0.00628636	0.00113788
chr4	135046255	135046354	5119836	0	+	0.434343	(0.42,0.455]	chr4	414782	9	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	50	2	3.95538	4.96755	5.97972	6.68846e-5	4.13864e-7	0.00142352	1.88179e-5
chr1	51252767	51252867	188802	0	+	0.47	(0.455,0.49]	chr1	24342	155	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.87186	4.96734	5.06282	2.33781e-4	1.16789e-4	0.00385436	0.0020505
chr2	120222402	120222496	2859292	0	-	0.531915	(0.53,0.59]	chr2	255245	5	CDS	CDS:EXON_MRNA	TMEM185B	ENSG00000226479.4	ENST00000426077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.66348	4.967175	5.27087	0.00107799	5.9416e-5	0.0118238	0.00130151
chr17	28655384	28655483	16486838	0	-	0.545455	(0.53,0.59]	chr17	1348116	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SDF2	ENSG00000132581.10	ENST00000247020.9:ENST00000592250.5:ENST00000585749.5:ENST00000588472.6:ENST00000587629.5:ENST00000591903.1:ENST00000589788.1:ENST00000587338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.66936	4.967135000000001	5.26491	0.00103174	6.31437e-5	0.0121443	0.00124286
chr2	230876911	230876967	2422234	0	+	0.571429	(0.53,0.59]	chr2	218116	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ITM2C	ENSG00000135916.16	ENST00000457215.5:ENST00000541852.5:ENST00000326427.11:ENST00000335005.10:ENST00000326407.10:ENST00000543957.5:ENST00000409704.6:ENST00000418408.2:ENST00000492029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.66936	4.967135000000001	5.26491	0.00103174	6.31437e-5	0.0121443	0.00124286
chr8	74603880	74603971	9894974	0	-	0.571429	(0.53,0.59]	chr8	748013	8	EXON_PSEUDO	EXON_PSEUDO	PCBP2P2	ENSG00000253341.1	ENST00000517662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.66936	4.967135000000001	5.26491	0.00103174	6.31437e-5	0.0121443	0.00124286
chr12	56276143	56276195	13349887	0	-	0.384615	(0.36,0.39]	chr12	1051019	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000552331.1:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	4.07544	4.96694	5.85844	3.61377e-5	6.66729e-7	8.73633e-4	2.83187e-5
chr19	4659902	4659952	17433086	0	-	0.5	(0.49,0.53]	chr19	1455336	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MYDGF	ENSG00000074842.8	ENST00000599761.5:ENST00000262947.8:ENST00000599630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.23006	4.9667449999999995	6.70343	0.00253719	1.29474e-9	0.0233955	1.3204e-7
chr2	222921354	222921430	2406127	0	+	0.421053	(0.42,0.455]	chr2	216586	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000421680.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.4231	4.966675	6.51025	0.00112541	6.20371e-9	0.0128481	5.13192e-7
chr2	46907809	46907862	2629867	0	-	0.45283	(0.42,0.455]	chr2	236800	1	CDS	CDS:EXON_MRNA:INTRON	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1:ENST00000409207.5:ENST00000470873.1:ENST00000409973.5:ENST00000409147.1:ENST00000409218.5:ENST00000412438.5:ENST00000434262.1:ENST00000477791.5:ENST00000479225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	141	2	4.39894	4.966609999999999	5.53428	3.61951e-6	1.34281e-12	1.29307e-4	2.92802e-10
chr19	9820297	9820376	17223480	0	+	0.443038	(0.42,0.455]	chr19	1418083	3	EXON_PSEUDO	EXON_PSEUDO	RPL10P15	ENSG00000267119.1	ENST00000585756.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	94	2	4.4164	4.966575000000001	5.51675	5.14372e-6	4.42895e-9	1.73456e-4	3.83229e-7
chr17	64749662	64749748	16641049	0	-	0.360465	(0.36,0.39]	chr17	1368652	1	EXON_LNCRNA	EXON_LNCRNA	ARHGAP27P1-BPTFP1-KPNA2P3	ENSG00000215769.8	ENST00000578492.5	lncRNA	lncRNA	lncRNA	lncRNA	2	100	2	3.99	4.966555	5.94311	6.1616e-5	3.53295e-12	0.00133408	6.94022e-10
chr7	65976014	65976103	8834533	0	-	0.58427	(0.53,0.59]	chr7	674593	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	4.66193	4.9664	5.27087	5.9416e-5	7.20737e-7	0.00130151	3.019e-5
chr3	180970157	180970224	3933678	0	+	0.402985	(0.39,0.42]	chr3	330736	1	CDS	CDS:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000476672.1:ENST00000482125.1:ENST00000481383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.32811	4.96639	6.60467	0.00182819	2.09314e-9	0.0183913	2.01229e-7
chr5	10263133	10263223	5874653	0	+	0.544444	(0.53,0.59]	chr5	461887	1	CDS	CDS:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000515676.5:ENST00000506600.1:ENST00000511995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	90	2	3.61089	4.96622	6.32155	4.22829e-6	6.18792e-8	1.34682e-4	4.08886e-6
chr11	77734474	77734566	12474498	0	-	0.467391	(0.455,0.49]	chr11	970420	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RSF1:FTH1P16	ENSG00000048649.14:ENSG00000227376.1	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2:ENST00000435241.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	1	68	2	4.63978	4.965805	5.29183	6.94032e-4	2.89856e-9	0.00876781	2.64796e-7
chr6	33201828	33201913	7121277	0	+	0.529412	(0.49,0.53]	chr6	547379	2	CDS	CDS:EXON_MRNA	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	11	384	2	4.81245	4.9657599999999995	5.11907	8.00349e-12	1e-12	1.55943e-9	2.25522e-10
chr16	81386374	81386472	15769343	0	+	0.367347	(0.36,0.39]	chr16	1255437	14	UTR3	UTR3:EXON_MRNA	GAN	ENSG00000261609.8	ENST00000648994.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.37423	4.96569	5.55715	4.42053e-6	2.50226e-6	1.39924e-4	9.53193e-5
chr2	135485043	135485143	2896912	0	-	0.28	[0,0.29]	chr2	258358	939	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.36183	4.965680000000001	5.56953	0.00170062	3.09235e-6	0.01759	1.03588e-4
chr11	102398768	102398866	12562706	0	-	0.295918	(0.29,0.33]	chr11	974345	26	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.80322	4.9655249999999995	5.12783	2.14303e-4	5.31593e-5	0.00359478	0.00108035
chr5	7887699	7887799	5871229	0	+	0.3	(0.29,0.33]	chr5	461549	6	INTRON	INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000508101.5:ENST00000509961.5:ENST00000512311.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.80322	4.9655249999999995	5.12783	2.14303e-4	5.31593e-5	0.00359478	0.00108035
chr17	38760535	38760608	16217853	0	+	0.547945	(0.53,0.59]	chr17	1310752	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4:ENST00000614132.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	4.40251	4.965085	5.52766	1.38993e-5	4.48447e-6	3.94563e-4	1.41623e-4
chr4	17628250	17628350	4734430	0	+	0.38	(0.36,0.39]	chr4	392804	27	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.83052	4.96496	5.0994	3.15227e-4	4.68763e-5	0.00452711	0.00107286
chr6	37045106	37045189	7136238	0	+	0.445783	(0.42,0.455]	chr6	549924	4	EXON_PSEUDO	EXON_PSEUDO	COX6A1P2	ENSG00000226976.3	ENST00000620597.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	126	2	3.93178	4.9641850000000005	5.99659	3.1348e-6	3.08076e-12	1.15746e-4	6.1559e-10
chr1	25361581	25361679	104301	0	+	0.510204	(0.49,0.53]	chr1	12231	10	UTR3	UTR3:EXON_MRNA	TMEM50A	ENSG00000183726.11	ENST00000374358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.84744	4.9640249999999995	5.08061	3.70203e-4	1.00361e-4	0.00515475	0.00196575
chr11	35806484	35806583	11910461	0	+	0.494949	(0.49,0.53]	chr11	910190	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7:ENST00000532066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.89405	4.9639299999999995	5.03381	2.57983e-4	1.49689e-4	0.00419998	0.0024973
chr17	28560119	28560191	16485764	0	-	0.513889	(0.49,0.53]	chr17	1347703	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000484580.6:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.89405	4.9639299999999995	5.03381	2.57983e-4	1.49689e-4	0.00419998	0.0024973
chr11	61329362	61329436	12404215	0	-	0.445946	(0.42,0.455]	chr11	960274	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5:ENST00000538129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	3.98629	4.963905	5.94152	2.11853e-6	2.47621e-7	7.50523e-5	1.36676e-5
chr1	55055992	55056090	203765	0	+	0.663265	(0.59,1]	chr1	26146	1	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	363	2	4.29345	4.96368	5.63391	1.19919e-7	8.30496e-11	6.54118e-6	1.26712e-8
chr6	30727870	30727952	7659194	0	-	0.573171	(0.53,0.59]	chr6	584270	3	UTR3	UTR3:EXON_MRNA	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	4.72822	4.963525000000001	5.19883	8.7034e-5	4.40858e-7	0.00177086	1.99026e-5
chr11	125606382	125606465	12194387	0	+	0.481928	(0.455,0.49]	chr11	940749	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526213.5:ENST00000527456.1:ENST00000525431.1:ENST00000526726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	258	2	3.81773	4.963165	6.1086	3.77818e-9	1e-12	3.62832e-7	2.25522e-10
chr19	11105409	11105504	17230018	0	+	0.631579	(0.59,1]	chr19	1419555	3	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	2	168	2	4.63181	4.96254	5.29327	4.23414e-6	4.49786e-8	1.4819e-4	2.80849e-6
chr7	6024209	6024301	8662406	0	-	0.5	(0.49,0.53]	chr7	662531	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1	protein_coding	protein_coding	protein_coding	protein_coding	10	339	2	4.94943	4.962455	4.97548	1.78513e-12	1e-12	4.10192e-10	2.25522e-10
chr12	53462480	53462492	12886556	0	+	0.583333	(0.53,0.59]	chr12	1002436	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	98	2	4.12962	4.9624500000000005	5.79528	2.61912e-6	7.35971e-8	9.89086e-5	4.2952e-6
chr5	64721512	64721611	6612921	0	-	0.323232	(0.29,0.33]	chr5	511139	35	UTR3	UTR3:EXON_MRNA	SREK1IP1	ENSG00000153006.16	ENST00000513458.9	protein_coding	protein_coding	protein_coding	protein_coding	5	139	2	4.22107	4.962255	5.70344	3.84846e-8	1e-12	2.72119e-6	2.25522e-10
chr4	67696444	67696544	5453475	0	-	0.27	[0,0.29]	chr4	436199	4	SS5_PROX	SS5_PROX:INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7:ENST00000506571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.85267	4.96156	5.07045	2.14908e-4	5.08054e-5	0.00332687	0.00114377
chr19	48329377	48329477	17365250	0	+	0.54	(0.53,0.59]	chr19	1441701	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1:ENST00000597057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	626	2	4.87241	4.9612750000000005	5.05014	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	23827358	23827457	17276787	0	+	0.515152	(0.49,0.53]	chr19	1427763	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	3	80	2	3.48945	4.9608	6.43215	9.31926e-6	1.33302e-8	2.86425e-4	9.93516e-7
chr15	99259319	99259419	15142855	0	+	0.47	(0.455,0.49]	chr15	1190792	18	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	3	100	2	4.5939	4.960744999999999	5.32759	1.92345e-5	7.72693e-10	5.18397e-4	8.32805e-8
chr6	26204644	26204744	7101589	0	+	0.57	(0.53,0.59]	chr6	542855	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C5	ENSG00000276966.2	ENST00000615164.2	protein_coding	protein_coding	protein_coding	protein_coding	10	362	2	4.26514	4.9602450000000005	5.65535	9.19091e-11	1e-12	1.26341e-8	2.46312e-10
chr1	89713498	89713597	346884	0	+	0.393939	(0.39,0.42]	chr1	34108	9	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.3313	4.960165	5.58903	0.00209984	5.14263e-6	0.0204266	1.58468e-4
chr6	33250460	33250555	7668731	0	-	0.494737	(0.49,0.53]	chr6	587357	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.9516	4.959535	5.96747	6.96459e-5	3.70439e-7	0.0013446	1.92378e-5
chrX	12619879	12619979	18583022	0	+	0.58	(0.53,0.59]	chrX	1587141	46	INTRON	INTRON	FRMPD4	ENSG00000169933.16	ENST00000656302.1:ENST00000640291.2:ENST00000657176.1:ENST00000672010.1:ENST00000380682.5:ENST00000675598.1:ENST00000673271.1:ENST00000672861.1:ENST00000657982.1:ENST00000672340.1:ENST00000672869.1:ENST00000616992.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	321	2	4.56882	4.95947	5.35012	2.36766e-8	1e-12	1.777e-6	2.25522e-10
chr1	160267126	160267225	1328440	0	-	0.50505	(0.49,0.53]	chr1	135908	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-574F21.3:RPSAP18	ENSG00000258465.8:ENSG00000224261.2	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000453374.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	72	2	3.29825	4.9584	6.61855	0.00019429700000000001	2.73279e-9	0.00332542	2.53367e-7
chr2	70276733	70276828	1878768	0	+	0.431579	(0.42,0.455]	chr2	177453	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PCYOX1	ENSG00000116005.12	ENST00000433351.7:ENST00000264441.9:ENST00000480949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.24133	4.958095	5.67486	0.00326918	3.42598e-6	0.0282494	1.12506e-4
chr5	10429892	10429960	5875495	0	+	0.426471	(0.42,0.455]	chr5	462054	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.24133	4.958095	5.67486	0.00326918	3.42598e-6	0.0282494	1.12506e-4
chr6	33304988	33305087	7669259	0	-	0.565657	(0.53,0.59]	chr6	587575	1	CDS	CDS:EXON_MRNA:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	244	2	4.93458	4.95778	4.98098	5.93885e-10	4.98079e-12	7.26693e-8	9.3677e-10
chr2	112660386	112660479	2001893	0	+	0.408602	(0.39,0.42]	chr2	190048	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	4.3053	4.95744	5.60958	7.30538e-6	2.11003e-6	2.13219e-4	8.25026e-5
chr10	75220894	75220970	11126508	0	+	0.473684	(0.455,0.49]	chr10	846657	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	126	2	3.64519	4.9572899999999995	6.26939	2.43598e-8	2.14641e-8	1.67264e-6	1.62968e-6
chr11	10508226	10508269	12270798	0	-	0.348837	(0.33,0.36]	chr11	948735	1	UTR5	UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	12	295	2	4.8219	4.957225	5.09255	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	93152599	93152697	1171190	0	-	0.357143	(0.33,0.36]	chr1	115372	30	UTR3	UTR3:EXON_MRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	4.92157	4.957185	4.9928	6.41659e-8	3.29916e-8	4.22526e-6	2.16154e-6
chr1	12192940	12193019	47153	0	+	0.607595	(0.59,1]	chr1	6106	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1:ENST00000489921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.11672	4.957129999999999	5.79754	0.0222273	3.712e-5	0.105595	8.06532e-4
chr2	74418542	74418642	2742654	0	-	0.69	(0.59,1]	chr2	244338	1	INTRON	INTRON	RP11-523H20.5:C2orf81	ENSG00000159239.13:ENSG00000284308.2	ENST00000517883.2:ENST00000612891.4:ENST00000684111.1:ENST00000640331.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.11672	4.957129999999999	5.79754	0.0222273	3.712e-5	0.105595	8.06532e-4
chr16	69462730	69462828	15723947	0	+	0.387755	(0.36,0.39]	chr16	1252041	3	UTR3	UTR3:EXON_MRNA	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6:ENST00000561792.6:ENST00000568237.1	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	4.83248	4.9567499999999995	5.08102	1.26726e-7	1.64707e-8	7.71033e-6	1.19219e-6
chr19	19120991	19121041	17502066	0	-	0.64	(0.59,1]	chr19	1468654	1	CDS	CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.65968	4.95674	5.2538	0.00413632	5.85045e-4	0.0324998	0.00793559
chr5	154053162	154053252	6310058	0	+	0.422222	(0.42,0.455]	chr5	492202	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000439768.2:ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.39468	4.955715	5.51675	0.00240483	5.14372e-6	0.0217482	1.73456e-4
chr8	100704925	100704988	9975952	0	-	0.412698	(0.39,0.42]	chr8	752652	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PABPC1	ENSG00000070756.17	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	917	2	4.73144	4.95567	5.1799	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	27623150	27623250	13658109	0	+	0.41	(0.39,0.42]	chr13	1076515	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	POLR1D	ENSG00000186184.19	ENST00000627604.1:ENST00000637180.1:ENST00000621089.2:ENST00000637389.1:ENST00000399697.7:ENST00000489647.4:ENST00000636817.1:ENST00000630983.1:ENST00000465887.2:ENST00000302979.5:ENST00000637071.1:ENST00000399696.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.14886	4.95565	5.76244	0.00415881	1.61725e-6	0.0325842	5.98677e-5
chr1	229330048	229330147	1541612	0	-	0.545455	(0.53,0.59]	chr1	154315	21	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.95233	4.95529	4.95825	3.02711e-4	2.87508e-4	0.00457439	0.00439897
chrX	71241015	71241108	19106943	0	-	0.55914	(0.53,0.59]	chrX	1625383	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.95233	4.95529	4.95825	3.02711e-4	2.87508e-4	0.00457439	0.00439897
chr16	29663828	29663919	15626147	0	+	0.538462	(0.53,0.59]	chr16	1239195	1	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	102	2	3.15313	4.9552499999999995	6.75737	2.62198e-5	1.77309e-9	6.06365e-4	1.87805e-7
chr7	73571264	73571341	8854574	0	-	0.519481	(0.49,0.53]	chr7	676030	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000488915.1:ENST00000426966.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.74438	4.954974999999999	5.16557	5.91752e-4	6.36135e-5	0.00743488	0.00136069
chr8	47777685	47777779	9815504	0	-	0.56383	(0.53,0.59]	chr8	742468	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	103	2	4.86312	4.9549	5.04668	1.54273e-7	3.63266e-8	9.14919e-6	2.34568e-6
chr9	92269880	92269980	10737344	0	-	0.5	(0.49,0.53]	chr9	812339	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.79086	4.95477	5.11868	4.20783e-4	9.66505e-5	0.00611538	0.00175267
chr2	70088423	70088520	1878485	0	+	0.57732000000000006	(0.53,0.59]	chr2	177396	7	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	8	317	2	4.92338	4.954685	4.98599	4.87198e-11	1e-12	7.88246e-9	2.25522e-10
chr1	179064304	179064400	575561	0	+	0.510417	(0.49,0.53]	chr1	59686	1	CDS	CDS:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.4279	4.95454	5.48118	0.00196987	1.24248e-5	0.0193972	3.28918e-4
chr3	33093496	33093590	4111938	0	-	0.510638	(0.49,0.53]	chr3	343556	7	CDS	CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.4279	4.95454	5.48118	0.00196987	1.24248e-5	0.0193972	3.28918e-4
chr2	241352537	241352637	2467898	0	+	0.27	[0,0.29]	chr2	223257	7	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000451310.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.1764	4.954365	5.73233	1.69626e-5	5.55063e-7	4.28575e-4	2.69622e-5
chr5	10391541	10391636	5875084	0	+	0.557895	(0.53,0.59]	chr5	461943	1	CDS	CDS:UTR3:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	454	2	4.37423	4.95418	5.53413	1.94855e-12	1e-12	4.09034e-10	2.46312e-10
chr19	35746423	35746523	17306630	0	+	0.49	(0.455,0.49]	chr19	1431502	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSENEN:AC002398.9	ENSG00000205155.8:ENSG00000188223.9	ENST00000591949.1:ENST00000222266.2:ENST00000587708.7:ENST00000591613.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.76048	4.95411	5.14774	3.99985e-4	7.45457e-5	0.00588767	0.00142165
chr1	1053827	1053902	2434	0	+	0.613333	(0.59,1]	chr1	582	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.89857	4.95401	5.00945	0.00182139	0.00149725	0.0176016	0.0159607
chr1	42835037	42835095	162161	0	+	0.637931	(0.59,1]	chr1	20389	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.89857	4.95401	5.00945	0.00182139	0.00149725	0.0176016	0.0159607
chr14	64453807	64453861	14344184	0	+	0.444444	(0.42,0.455]	chr14	1121381	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000651891.1:ENST00000556284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.54792	4.953945	5.35997	9.66045e-4	2.41298e-5	0.0115185	5.6648e-4
chr9	33278112	33278168	10234364	0	+	0.428571	(0.42,0.455]	chr9	769378	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CHMP5	ENSG00000086065.14	ENST00000419016.6:ENST00000223500.9:ENST00000487080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.54792	4.953945	5.35997	9.66045e-4	2.41298e-5	0.0115185	5.6648e-4
chr16	53156865	53156961	15665898	0	+	0.364583	(0.36,0.39]	chr16	1245065	8	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	4.60763	4.95393	5.30023	1.38946e-5	8.03203e-7	3.94563e-4	3.319e-5
chr1	33021366	33021461	924544	0	-	0.463158	(0.455,0.49]	chr1	97538	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5:ENST00000469238.1:ENST00000466029.1:ENST00000673291.1:ENST00000487289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	4.17407	4.953845	5.73362	1.754e-5	1.35346e-6	4.38078e-4	5.67444e-5
chr19	40370109	40370173	17328650	0	+	0.59375	(0.59,1]	chr19	1435562	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	PLD3:MIR6796	ENSG00000105223.20:ENSG00000275652.1	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000409281.5:ENST00000492243.1:ENST00000599353.1:ENST00000617519.1:ENST00000480030.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	81	2	3.82178	4.95334	6.0849	2.76767e-4	1.19649e-5	0.00409634	3.513e-4
chr1	52383494	52383569	1018795	0	-	0.493333	(0.49,0.53]	chr1	105586	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.55929	4.953094999999999	5.3469	0.00116196	2.75121e-5	0.0130851	6.30607e-4
chr1	161673144	161673229	501561	0	+	0.505882	(0.49,0.53]	chr1	54362	3	CDS	CDS:EXON_MRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.55929	4.953094999999999	5.3469	0.00116196	2.75121e-5	0.0130851	6.30607e-4
chr15	72375795	72375872	15369773	0	-	0.584416	(0.53,0.59]	chr15	1214493	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2:ENST00000567213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.86232	4.95265	5.04298	4.57805e-4	1.91383e-4	0.00608573	0.0032874
chr4	870041	870125	5276283	0	-	0.535714	(0.53,0.59]	chr4	424388	2	INTRON	INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.86232	4.95265	5.04298	4.57805e-4	1.91383e-4	0.00608573	0.0032874
chr19	58394496	58394595	17412769	0	+	0.575758	(0.53,0.59]	chr19	1451038	1	CDS	CDS:EXON_MRNA	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	666	2	4.92611	4.952615	4.97912	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	151794158	151794202	6299646	0	+	0.340909	(0.33,0.36]	chr5	491912	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000676590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	4.17122	4.952505	5.73379	1.72402e-5	5.95199e-7	4.33531e-4	2.84227e-5
chr2	61484020	61484105	2690405	0	-	0.376471	(0.36,0.39]	chr2	240336	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	4.4435	4.95221	5.46092	5.16588e-8	4.88857e-10	3.49015e-6	5.56818e-8
chr22	26716653	26716752	18328434	0	+	0.444444	(0.42,0.455]	chr22	1557522	43	INTRON	INTRON	MIATNB	ENSG00000244625.7	ENST00000651474.1:ENST00000444388.5:ENST00000450963.5:ENST00000449017.6:ENST00000437071.5:ENST00000435162.5:ENST00000440816.5:ENST00000421253.1:ENST00000653953.1:ENST00000668496.1	lncRNA	lncRNA	lncRNA	lncRNA	1	87	2	2.57051	4.951945	7.33338	0.0265466	2.68052e-12	0.120071	5.42137e-10
chr11	126267548	126267630	12645196	0	-	0.414634	(0.39,0.42]	chr11	981863	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000528744.5:ENST00000530680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	4.77106	4.950975	5.13089	3.03764e-4	1.17016e-8	0.00472028	8.85759e-7
chr6	160064803	160064901	7528536	0	+	0.438776	(0.42,0.455]	chr6	574858	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	4.91213	4.950565	4.989	1.75074e-4	4.29924e-8	0.00306313	2.69981e-6
chr1	183549207	183549288	597980	0	+	0.469136	(0.455,0.49]	chr1	62116	1	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000493045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.81624	4.95052	6.0848	1.48205e-4	1.71103e-7	0.00269793	8.87341e-6
chr1	32230926	32231023	127567	0	+	0.463918	(0.455,0.49]	chr1	15814	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	94	2	3.899	4.950475	6.00195	1.86149e-7	7.01497e-8	1.07114e-5	4.1202e-6
chr2	171966895	171966949	2208556	0	+	0.314815	(0.29,0.33]	chr2	202150	2	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	4.04672	4.950245	5.85377	1.30659e-6	2.10378e-7	5.01867e-5	1.18923e-5
chr6	170659427	170659527	7556979	0	+	0.57	(0.53,0.59]	chr6	576995	190	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.43279	4.950205	5.46762	0.0026472	1.97761e-5	0.0231864	5.29643e-4
chr22	24269427	24269510	18449252	0	-	0.566265	(0.53,0.59]	chr22	1573625	2	EXON_PSEUDO	EXON_PSEUDO	AP000354.2	ENSG00000215464.4	ENST00000396982.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	34	2	4.43863	4.9501349999999995	5.46164	0.00254763	2.11519e-5	0.0233955	5.06522e-4
chr5	124808908	124808989	6798013	0	-	0.54321	(0.53,0.59]	chr5	521005	2	EXON_PSEUDO	EXON_PSEUDO	RP11-436H11.1	ENSG00000242814.2	ENST00000464124.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	34	2	4.43863	4.9501349999999995	5.46164	0.00254763	2.11519e-5	0.0233955	5.06522e-4
chr8	143857701	143857796	10146415	0	-	0.326316	(0.29,0.33]	chr8	762988	5	UTR3	UTR3:EXON_MRNA	EPPK1	ENSG00000261150.3	ENST00000615648.2:ENST00000568225.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.81618	4.94974	5.0833	2.74489e-4	4.57622e-5	0.00406677	0.00105479
chr2	131268954	131269054	2066975	0	+	0.47	(0.455,0.49]	chr2	194205	38	INTRON	INTRON	PLEKHB2	ENSG00000115762.16	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	4.0992	4.949605	5.80001	2.73975e-5	1.35407e-6	6.95757e-4	5.16241e-5
chr1	38710498	38710596	144554	0	+	0.418367	(0.39,0.42]	chr1	18021	17	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	110	2	4.49324	4.94953	5.40582	0.00108192	4.50628e-12	0.0124943	8.60045e-10
chr3	13360417	13360491	4046658	0	-	0.567568	(0.53,0.59]	chr3	339648	3	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	98	2	2.64475	4.94952	7.25429	0.00453071	2.12673e-11	0.0351187	3.41926e-9
chr22	36421365	36421458	18499124	0	-	0.44086	(0.42,0.455]	chr22	1578315	2	EXON_PSEUDO	EXON_PSEUDO	RPS15AP38	ENSG00000237668.1	ENST00000413110.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	85	2	4.82151	4.949434999999999	5.07736	1.37132e-7	2.03293e-8	8.22607e-6	1.42506e-6
chr18	59355366	59355420	17142601	0	-	0.481481	(0.455,0.49]	chr18	1407662	2	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	198	2	4.87128	4.949075	5.02687	1.7972e-10	4.64107e-12	2.53468e-8	8.81428e-10
chr15	74414837	74414891	15374477	0	-	0.62963	(0.59,1]	chr15	1215167	1	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.7945	4.948980000000001	5.10346	0.0031766	8.40506e-4	0.0279054	0.00981548
chr21	45531388	45531483	18279225	0	-	0.642105	(0.59,1]	chr21	1550611	1	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.7945	4.948980000000001	5.10346	0.0031766	8.40506e-4	0.0279054	0.00981548
chr14	103521883	103521950	14795346	0	-	0.731343	(0.59,1]	chr14	1159551	2	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000553652.5:ENST00000557569.1:ENST00000554426.5:ENST00000553878.5:ENST00000557287.1:ENST00000555659.5:ENST00000554705.5:ENST00000555770.1:ENST00000557530.1:ENST00000553994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.82325	4.9488900000000005	5.07453	0.002381	0.00117617	0.0216895	0.0132131
chr17	22524399	22524487	16169262	0	+	0.454545	(0.42,0.455]	chr17	1304369	4	UTR3	UTR3:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	13	360	2	3.76081	4.9488199999999996	6.13683	6.98105e-10	1e-12	8.34184e-8	2.25522e-10
chr2	120222117	120222212	2859289	0	-	0.442105	(0.42,0.455]	chr2	255245	2	CDS	CDS:EXON_MRNA	TMEM185B	ENSG00000226479.4	ENST00000426077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.40276	4.94852	5.49428	0.0017618	1.07978e-5	0.0180053	2.9314e-4
chr1	30741639	30741716	915644	0	-	0.532468	(0.53,0.59]	chr1	95893	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1:ENST00000476492.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	133	2	4.57862	4.948425	5.31823	2.22391e-8	3.54171e-9	1.54405e-6	3.4312e-7
chr16	28240082	28240180	15904673	0	-	0.591837	(0.59,1]	chr16	1273390	5	EXON_PSEUDO	EXON_PSEUDO	GAPDHP35	ENSG00000250982.2	ENST00000513369.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	52	2	3.84557	4.94761	6.04965	0.0410704	9.85057e-6	0.163285	2.72926e-4
chr1	146731532	146731632	451037	0	+	0.44	(0.42,0.455]	chr1	44540	1	SS3_PROX	SS3_PROX:INTRON	HYDIN2	ENSG00000276975.3	ENST00000614586.3	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	35	2	4.05954	4.9474350000000005	5.83533	0.00617886	1.15767e-6	0.0439741	4.52486e-5
chr3	128798840	128798930	4441956	0	-	0.422222	(0.42,0.455]	chr3	369080	1	EXON_PSEUDO	EXON_PSEUDO	RPS15AP16	ENSG00000239483.1	ENST00000472521.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	35	2	4.05954	4.9474350000000005	5.83533	0.00617886	1.15767e-6	0.0439741	4.52486e-5
chr2	27039740	27039837	1690664	0	+	0.546392	(0.53,0.59]	chr2	165359	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000444135.5:ENST00000434544.1:ENST00000460665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	4.69545	4.94714	5.19883	8.7034e-5	5.62788e-7	0.00177086	2.45035e-5
chr6	27838761	27838851	7105170	0	+	0.577778	(0.53,0.59]	chr6	543471	1	CDS	CDS:EXON_MRNA	H2BC15	ENSG00000233822.5	ENST00000612898.1:ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	243	2	4.92326	4.947065	4.97087	5.07198e-11	3.03413e-11	7.44435e-9	5.18191e-9
chr12	111987466	111987566	13542427	0	-	0.41	(0.39,0.42]	chr12	1065533	83	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	110	2	4.87741	4.946985	5.01656	8.30335e-8	2.51498e-10	5.29895e-6	3.07762e-8
chr11	35189911	35189988	11908420	0	+	0.506494	(0.49,0.53]	chr11	910029	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD44	ENSG00000026508.20	ENST00000415148.6:ENST00000263398.11:ENST00000428726.8:ENST00000528086.5:ENST00000425428.6:ENST00000526669.6:ENST00000433892.6:ENST00000525211.6:ENST00000278386.10:ENST00000434472.6:ENST00000352818.8:ENST00000442151.6:ENST00000526000.6:ENST00000279452.10:ENST00000527889.6:ENST00000531118.5:ENST00000528455.5:ENST00000531873.5:ENST00000525209.5:ENST00000639002.1:ENST00000531110.6:ENST00000525685.6:ENST00000534296.5:ENST00000525688.5:ENST00000278385.10:ENST00000533222.5:ENST00000525241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.12263	4.946635000000001	5.77064	0.00591451	1.94063e-6	0.0427941	6.9799e-5
chr19	48905818	48905885	17367674	0	+	0.626866	(0.59,1]	chr19	1442118	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	110	2	3.25434	4.94635	6.63836	4.06738e-4	3.02038e-7	0.00598202	1.44093e-5
chr3	61742640	61742733	4232427	0	-	0.494624	(0.49,0.53]	chr3	356045	3	EXON_PSEUDO	EXON_PSEUDO	RPL10AP6	ENSG00000226360.5	ENST00000472730.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	61	2	3.33324	4.946145	6.55905	0.00162947	4.57009e-9	0.0169972	3.94074e-7
chr7	100094256	100094341	8949633	0	-	0.564706	(0.53,0.59]	chr7	683513	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA:INTRON	MCM7:MIR93:MIR106B	ENSG00000166508.18:ENSG00000207757.1:ENSG00000208036.1	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000385024.1:ENST00000491245.6:ENST00000493352.1:ENST00000385301.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	4	160	2	4.0781	4.9461200000000005	5.81414	1.11222e-7	3.79776e-11	6.89972e-6	5.74825e-9
chr17	43015284	43015381	16550644	0	-	0.56701	(0.53,0.59]	chr17	1357992	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.5586	4.946055	5.33351	0.00161229	4.35359e-5	0.0169168	0.00091744700000000005
chr11	57423981	57424028	12394605	0	-	0.489362	(0.455,0.49]	chr11	958685	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5:ENST00000530232.1:ENST00000528187.5:ENST00000529494.5:ENST00000533245.5:ENST00000533235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	189	2	4.397	4.94594	5.49488	6.48592e-10	1.15374e-12	7.11131e-8	2.80542e-10
chr15	24909328	24909427	15161312	0	-	0.494949	(0.49,0.53]	chr15	1193417	5	EXON_PSEUDO	EXON_PSEUDO	RPL5P1	ENSG00000241061.3	ENST00000460716.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	79	2	3.63571	4.94586	6.25601	3.18193e-6	5.54522e-8	1.16805e-4	3.37102e-6
chr14	103665321	103665420	14504736	0	+	0.444444	(0.42,0.455]	chr14	1134355	20	INTRON	INTRON	RP11-73M18.2:KLC1	ENSG00000256500.6:ENSG00000126214.21	ENST00000472726.3:ENST00000348520.10:ENST00000380038.7:ENST00000389744.8:ENST00000334553.10:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.67981	4.9458400000000005	5.21187	5.38444e-4	5.5797e-5	0.00744072	0.00112719
chr4	139678542	139678642	5129280	0	+	0.44	(0.42,0.455]	chr4	415313	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000502587.1:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.67981	4.9458400000000005	5.21187	5.38444e-4	5.5797e-5	0.00744072	0.00112719
chr6	42867003	42867100	7153748	0	+	0.443299	(0.42,0.455]	chr6	552174	17	UTR3	UTR3:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.67981	4.9458400000000005	5.21187	5.38444e-4	5.5797e-5	0.00744072	0.00112719
chr1	247878855	247878954	816543	0	+	0.383838	(0.36,0.39]	chr1	80729	25	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.0322	4.94532	5.85844	0.00588589	6.66729e-7	0.0427941	2.83187e-5
chr15	61153578	61153678	15324594	0	-	0.36	(0.33,0.36]	chr15	1209260	1121	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000551975.5:ENST00000557822.5:ENST00000559145.1:ENST00000561093.1:ENST00000560300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.33896	4.944834999999999	5.55071	0.00182033	4.61342e-6	0.0183913	0.00014480800000000001
chr4	128272398	128272457	5639371	0	-	0.322034	(0.29,0.33]	chr4	449288	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	4.09886	4.944605	5.79035	4.1989e-5	7.26161e-7	9.84661e-4	3.03698e-5
chr2	74881784	74881859	1893329	0	+	0.613333	(0.59,1]	chr2	179608	2	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.44671	4.944535	5.44236	0.00931497	2.02004e-4	0.0586162	0.00317801
chr19	34393727	34393734	17300493	0	+	0.285714	[0,0.29]	chr19	1429871	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	4.76049	4.943965	5.12744	4.08025e-7	9.03146e-9	2.07614e-5	7.11749e-7
chr11	2925097	2925197	11769444	0	+	0.58	(0.53,0.59]	chr11	900417	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000463571.5:ENST00000441077.5:ENST00000449603.5:ENST00000495518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.00393	4.943865000000001	5.8838	0.0108084	1.51824e-6	0.064368	5.67784e-5
chr9	129005644	129005710	10482843	0	+	0.515152	(0.49,0.53]	chr9	791173	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.28332	4.94367	5.60402	0.00338762	5.78803e-6	0.0288632	1.75119e-4
chr9	35714305	35714373	10639652	0	-	0.588235	(0.53,0.59]	chr9	805087	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.30776	4.943535000000001	5.57931	0.00407289	1.05602e-5	0.0324137	2.89015e-4
chr17	3824375	3824469	16413305	0	-	0.319149	(0.29,0.33]	chr17	1336469	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	4.36745	4.94341	5.51937	4.53307e-6	2.69449e-6	1.42727e-4	1.01443e-4
chr17	8186844	8186944	16109163	0	+	0.59	(0.53,0.59]	chr17	1298197	5	PRIMIRNA	PRIMIRNA	MIR4521	ENSG00000283160.1	ENST00000635897.1	miRNA	primary_miRNA	miRNA	primary_miRNA	92	3275	2	4.80285	4.94318	5.08351	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	64754004	64754084	16641095	0	-	0.375	(0.36,0.39]	chr17	1368668	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ARHGAP27P1-BPTFP1-KPNA2P3:KPNA2P3	ENSG00000215769.8:ENSG00000266820.1	ENST00000578492.5:ENST00000584190.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	54	2	3.33241	4.942875	6.55334	0.00193631	2.38303e-9	0.0192272	2.24337e-7
chr11	121306435	121306486	12176647	0	+	0.392157	(0.39,0.42]	chr11	939022	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SC5D	ENSG00000109929.10	ENST00000531140.1:ENST00000264027.9:ENST00000534230.5:ENST00000527762.5:ENST00000392789.2:ENST00000528991.1:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.49324	4.94256	5.39188	0.00108192	1.75441e-5	0.0124943	4.38078e-4
chr16	3157389	3157483	15828800	0	-	0.585106	(0.53,0.59]	chr16	1263131	8	EXON_LNCRNA	EXON_LNCRNA	RP11-473M20.16	ENSG00000261889.1	ENST00000570843.1	lncRNA	lncRNA	lncRNA	lncRNA	102	3646	2	4.73195	4.94235	5.15275	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	44114184	44114242	11926267	0	+	0.603448	(0.59,1]	chr11	911534	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000529186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.34487	4.94228	5.53969	0.0123678	1.29608e-4	0.0705839	0.00223885
chrX	74583074	74583174	19117433	0	-	0.47	(0.455,0.49]	chrX	1626323	2	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	RLIM:PABPC1P3	ENSG00000131263.13:ENSG00000230673.3	ENST00000332687.11:ENST00000469174.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	30	2	4.50805	4.942069999999999	5.37609	0.00122223	2.05373e-5	0.0135383	4.97369e-4
chr11	119026936	119027015	12626356	0	-	0.506329	(0.49,0.53]	chr11	979717	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	4.45323	4.941755	5.43028	2.6067e-6	9.03974e-10	9.88864e-5	9.62406e-8
chr19	18435619	18435676	17499321	0	-	0.561404	(0.53,0.59]	chr19	1468102	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582287.6:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2:ENST00000583309.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	4.76025	4.94163	5.12301	1.2852e-4	3.4642e-7	0.00241206	1.61837e-5
chr2	114005583	114005655	2852003	0	-	0.430556	(0.42,0.455]	chr2	254676	3	EXON_SMALL	EXON_SMALL	U3	ENSG00000212182.2	ENST00000390880.2	snoRNA	snoRNA	snoRNA	snoRNA	4	83	2	3.31013	4.9412199999999995	6.57231	8.58184e-6	3.63819e-9	2.65793e-4	3.23059e-7
chr2	222623649	222623730	3196920	0	-	0.493827	(0.49,0.53]	chr2	281684	1	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.41931	4.941025	5.46274	1.13094e-5	3.4941e-6	3.3464e-4	1.14163e-4
chr11	71435374	71435474	12444400	0	-	0.67	(0.59,1]	chr11	966971	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	221	2	4.92677	4.940955000000001	4.95514	5.81119e-7	1.15471e-8	2.78971e-5	8.76729e-7
chr6	36596862	36596915	7134536	0	+	0.528302	(0.49,0.53]	chr6	549581	1	CDS	CDS:EXON_MRNA	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	4.01171	4.940645	5.86958	4.88513e-5	7.54524e-7	0.00100497	3.49213e-5
chr2	54987559	54987628	2666257	0	-	0.492754	(0.49,0.53]	chr2	238493	2	CDS	CDS:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	4.89682	4.94037	4.98392	4.13969e-8	9.41684e-10	2.89671e-6	9.95263e-8
chr1	149887816	149887916	1287115	0	-	0.69	(0.59,1]	chr1	127859	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC21	ENSG00000184270.6	ENST00000331128.6	protein_coding	protein_coding	protein_coding	protein_coding	3	156	2	4.16402	4.94031	5.7166	5.56053e-5	3.88704e-7	0.0011271	1.99593e-5
chr1	154978777	154978871	482018	0	+	0.393617	(0.39,0.42]	chr1	50167	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000477676.6:ENST00000474215.5:ENST00000473344.1:ENST00000471245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.89218	4.940215	4.98825	1.6518e-4	1.62756e-4	0.0029267300000000002	0.00266622
chrX	135051023	135051116	19246088	0	-	0.419355	(0.39,0.42]	chrX	1634621	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RTL8A	ENSG00000203950.7	ENST00000370775.3:ENST00000518153.1:ENST00000520964.1:ENST00000522309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	100	2	4.61324	4.94018	5.26712	9.79062e-9	3.45202e-9	8.36741e-7	3.09496e-7
chr11	90282938	90283033	12059328	0	+	0.505263	(0.49,0.53]	chr11	929980	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	182	2	4.42073	4.940015	5.4593	3.91641e-9	3.27971e-12	3.75244e-7	6.47556e-10
chr12	49186782	49186833	13324037	0	-	0.568627	(0.53,0.59]	chr12	1045773	2	CDS	CDS:UTR5:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1:ENST00000548363.1:ENST00000550254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	142	2	4.00995	4.940004999999999	5.87006	1.99748e-6	2.10746e-11	7.14901e-5	3.73043e-9
chr19	15834633	15834729	17246582	0	+	0.510417	(0.49,0.53]	chr19	1422763	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	10	290	2	4.44204	4.9399	5.43776	3.35387e-12	3.16513e-12	6.80156e-10	6.60703e-10
chr6	125263154	125263251	7383896	0	+	0.360825	(0.36,0.39]	chr6	566005	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPD52L1	ENSG00000111907.21	ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000392482.6:ENST00000530868.1:ENST00000571678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	106	2	4.10393	4.939545	5.77516	5.05798e-7	2.13519e-9	2.49522e-5	2.04258e-7
chr1	156239953	156240042	486996	0	+	0.505618	(0.49,0.53]	chr1	51472	5	UTR3	UTR3:EXON_MRNA:INTRON	PMF1-BGLAP:PMF1	ENSG00000260238.6:ENSG00000160783.19	ENST00000490491.5:ENST00000368279.7:ENST00000368276.8:ENST00000368277.3:ENST00000320139.5:ENST00000567140.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.67972	4.939275	5.19883	6.94757e-4	6.30063e-5	0.00876781	0.00124286
chr19	40441304	40441396	17566445	0	-	0.5	(0.49,0.53]	chr19	1476366	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SERTAD3	ENSG00000167565.13	ENST00000322354.4:ENST00000392028.8:ENST00000601217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.67972	4.939275	5.19883	6.94757e-4	6.30063e-5	0.00876781	0.00124286
chr20	24963967	24964022	17931253	0	-	0.527273	(0.49,0.53]	chr20	1517949	2	CDS	CDS:EXON_MRNA	APMAP	ENSG00000101474.12	ENST00000217456.3:ENST00000451442.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.67972	4.939275	5.19883	6.94757e-4	6.30063e-5	0.00876781	0.00124286
chr2	148881746	148881845	2932483	0	-	0.434343	(0.42,0.455]	chr2	259979	15	INTRON	INTRON	KIF5C-AS1	ENSG00000231079.7	ENST00000601658.5:ENST00000446781.3	lncRNA	lncRNA	lncRNA	lncRNA	372	10300	2	4.93499	4.938365	4.94174	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	55726190	55726261	13347077	0	-	0.492958	(0.49,0.53]	chr12	1050336	2	CDS	CDS:UTR3:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000548117.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	251	2	4.69553	4.9378150000000005	5.1801	2.66017e-10	1e-12	3.58708e-8	2.25522e-10
chrX	78113743	78113821	18747018	0	+	0.5	(0.49,0.53]	chrX	1599815	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000477335.5:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	282	2	3.74306	4.93771	6.13236	4.82557e-9	1e-12	4.11627e-7	2.46312e-10
chr11	61308982	61309077	12403979	0	-	0.473684	(0.455,0.49]	chr11	960193	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.71305	4.9376	5.16215	5.04348e-5	3.85068e-7	0.00113788	1.76303e-5
chr1	43245527	43245627	968187	0	-	0.49	(0.455,0.49]	chr1	102008	298	INTRON	INTRON	EBNA1BP2	ENSG00000117395.13	ENST00000461557.2:ENST00000466927.5:ENST00000474566.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	31	2	4.36307	4.93675	5.51043	0.00218641	9.08728e-6	0.0208941	2.53877e-4
chr1	44780426	44780522	971747	0	-	0.46875	(0.455,0.49]	chr1	102494	2	EXON_PSEUDO	EXON_PSEUDO	RPS15AP11	ENSG00000234093.3	ENST00000594193.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.36307	4.93675	5.51043	0.00218641	9.08728e-6	0.0208941	2.53877e-4
chr12	111993483	111993581	13094154	0	+	0.459184	(0.455,0.49]	chr12	1021447	6	EXON_PSEUDO	EXON_PSEUDO	SLC25A3P2	ENSG00000258373.1	ENST00000547720.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.36307	4.93675	5.51043	0.00218641	9.08728e-6	0.0208941	2.53877e-4
chrX	77855500	77855590	19129247	0	-	0.455556	(0.455,0.49]	chrX	1626880	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.36307	4.93675	5.51043	0.00218641	9.08728e-6	0.0208941	2.53877e-4
chr6	7281142	7281241	7586803	0	-	0.363636	(0.36,0.39]	chr6	578692	1	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.24194	4.936685	5.63143	0.00276729	3.24005e-6	0.0247437	1.07746e-4
chr8	26370610	26370708	9238348	0	+	0.377551	(0.36,0.39]	chr8	707539	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000665751.1:ENST00000517754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.24194	4.936685	5.63143	0.00276729	3.24005e-6	0.0247437	1.07746e-4
chr1	32669485	32669563	130301	0	+	0.384615	(0.36,0.39]	chr1	16094	1	CDS	CDS:UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.58747	4.93666	5.28585	6.55819e-4	2.81625e-5	0.00860229	6.42183e-4
chr7	12389203	12389280	8683576	0	-	0.415584	(0.39,0.42]	chr7	664065	2	CDS	CDS:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	3.60927	4.936405	6.26354	4.34681e-6	3.79414e-8	1.51853e-4	2.43463e-6
chrX	77968133	77968225	19129660	0	-	0.467391	(0.455,0.49]	chrX	1626916	3	UTR3	UTR3:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	4.46858	4.93614	5.4037	1.20695e-5	2.38087e-6	3.52389e-4	8.3081e-5
chr1	204835669	204835769	672823	0	+	0.47	(0.455,0.49]	chr1	67913	65	INTRON	INTRON	NFASC	ENSG00000163531.17	ENST00000404977.6:ENST00000339876.11:ENST00000403080.5:ENST00000680427.1:ENST00000430393.7:ENST00000513543.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.0204	4.935975	5.85155	0.00736097	9.4476e-7	0.0490627	3.80876e-5
chr18	2115427	2115526	16979113	0	-	0.474747	(0.455,0.49]	chr18	1396327	33	INTRON	INTRON	RP11-161I6.2	ENSG00000263745.7	ENST00000584867.1:ENST00000670529.1:ENST00000659989.1:ENST00000671104.1:ENST00000579097.1:ENST00000639316.2	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.0204	4.935975	5.85155	0.00736097	9.4476e-7	0.0490627	3.80876e-5
chr2	149587720	149587778	2933077	0	-	0.706897	(0.59,1]	chr2	260068	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000422782.2:ENST00000460311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.23348	4.935919999999999	6.63836	0.00352837	3.02038e-7	0.0298518	1.44093e-5
chr12	119673963	119674057	13114448	0	+	0.521277	(0.49,0.53]	chr12	1023539	1	CDS	CDS:UTR5:EXON_MRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	4.62574	4.935765	5.24579	4.073e-5	7.86745e-7	9.64741e-4	3.25904e-5
chr1	160353159	160353237	496753	0	+	0.435897	(0.42,0.455]	chr1	53479	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	4.75899	4.935585	5.11218	6.01815e-5	2.77134e-7	0.00130886	1.3349e-5
chr17	68042263	68042353	16333802	0	+	0.511111	(0.49,0.53]	chr17	1325123	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	116	2	4.48557	4.935560000000001	5.38555	3.59269e-8	1.36815e-9	2.56668e-6	1.38676e-7
chr1	111461191	111461290	407357	0	+	0.323232	(0.29,0.33]	chr1	40192	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	123	2	4.55693	4.93497	5.31301	1.23302e-9	7.43838e-12	1.36919e-7	1.33562e-9
chr10	28583398	28583451	10990251	0	+	0.433962	(0.42,0.455]	chr10	835857	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.75728	4.93473	5.11218	5.3817e-4	6.01815e-5	0.00686676	0.00130886
chr9	120877887	120877987	10834372	0	-	0.43	(0.42,0.455]	chr9	820614	8	INTRON	INTRON	PHF19	ENSG00000119403.15	ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.75728	4.93473	5.11218	5.3817e-4	6.01815e-5	0.00686676	0.00130886
chr17	68042904	68042999	16333809	0	+	0.473684	(0.455,0.49]	chr17	1325125	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	130	2	4.46598	4.93464	5.4033	2.65925e-9	7.61238e-10	2.4747e-7	9.03421e-8
chr2	175927372	175927472	3028111	0	-	0.45	(0.42,0.455]	chr2	268146	36	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.91213	4.934365	4.9566	2.10615e-4	1.75074e-4	0.00327655	0.00306313
chr21	33505560	33505631	18220342	0	-	0.43662	(0.42,0.455]	chr21	1546328	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.91213	4.934365	4.9566	2.10615e-4	1.75074e-4	0.00327655	0.00306313
chr6	12120786	12120885	7055502	0	+	0.444444	(0.42,0.455]	chr6	540264	10	CDS	CDS:UTR5:EXON_MRNA:INTRON	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.91213	4.934365	4.9566	2.10615e-4	1.75074e-4	0.00327655	0.00306313
chr15	63747623	63747723	15336474	0	-	0.36	(0.33,0.36]	chr15	1210636	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000560519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.1284	4.933949999999999	5.7395	0.00407303	1.26833e-6	0.0324137	4.89488e-5
chr1	155330933	155331023	483801	0	+	0.488889	(0.455,0.49]	chr1	50857	5	UTR3	UTR3:EXON_MRNA	RUSC1	ENSG00000160753.16	ENST00000368352.10:ENST00000368354.7:ENST00000368347.8:ENST00000368349.8:ENST00000471876.5:ENST00000292254.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.63978	4.93386	5.22794	6.94032e-4	4.80556e-5	0.00876781	9.91058e-4
chr6	52403793	52403889	7177648	0	+	0.479167	(0.455,0.49]	chr6	555098	6	CDS	CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.63978	4.93386	5.22794	6.94032e-4	4.80556e-5	0.00876781	9.91058e-4
chr4	87372761	87372815	5518362	0	-	0.407407	(0.39,0.42]	chr4	441952	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	4.78838	4.933450000000001	5.07852	1.02164e-4	1.7675e-7	0.00183311	1.03066e-5
chr6	149379239	149379332	7480756	0	+	0.430108	(0.42,0.455]	chr6	571632	5	CDS	CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	4.34987	4.9333100000000005	5.51675	5.55486e-6	5.14372e-6	1.73456e-4	1.68903e-4
chr2	136329440	136329534	2899183	0	-	0.542553	(0.53,0.59]	chr2	258698	1	EXON_PSEUDO	EXON_PSEUDO	UBBP1	ENSG00000230037.1	ENST00000392399.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	57	2	3.93648	4.93266	5.92884	8.06385e-5	1.11987e-6	0.00167444	4.4003e-5
chr8	125018630	125018727	9595557	0	+	0.371134	(0.36,0.39]	chr8	727934	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000518604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	116	2	4.50306	4.9326550000000005	5.36225	1.8245e-6	5.94913e-12	7.35552e-5	1.09585e-9
chr7	104748843	104748942	8969158	0	-	0.535354	(0.53,0.59]	chr7	686516	43	INTRON	INTRON	LHFPL3-AS1	ENSG00000226869.6	ENST00000433514.5:ENST00000449764.5	lncRNA	lncRNA	lncRNA	lncRNA	28	1167	2	3.61795	4.932055	6.24616	4.70448e-10	1e-12	5.92665e-8	2.25522e-10
chr2	74462140	74462236	2742889	0	-	0.583333	(0.53,0.59]	chr2	244411	9	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	4.59244	4.931655	5.27087	5.9416e-5	1.19382e-6	0.00130151	4.64223e-5
chrX	141907504	141907604	18883541	0	+	0.57	(0.53,0.59]	chrX	1608997	22	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	4.59244	4.931655	5.27087	5.9416e-5	1.19382e-6	0.00130151	4.64223e-5
chr8	143991976	143992075	9649803	0	+	0.525253	(0.49,0.53]	chr8	731407	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000529301.5:ENST00000534791.5:ENST00000525513.1:ENST00000533044.5:ENST00000527194.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	90	2	4.77985	4.931615	5.08338	2.21147e-7	2.00613e-8	1.24171e-5	1.40889e-6
chr17	44851763	44851817	16559911	0	-	0.574074	(0.53,0.59]	chr17	1359687	2	CDS	CDS:UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.66348	4.931155	5.19883	0.00107799	8.7034e-5	0.0118238	0.00177086
chr12	8943404	8943469	13197254	0	-	0.538462	(0.53,0.59]	chr12	1033928	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000543704.5:ENST00000537621.1:ENST00000543258.1:ENST00000543834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.66936	4.93112	5.19288	0.00103174	9.22873e-5	0.0121443	0.0016906
chr19	7620845	7620940	17447002	0	-	0.568421	(0.53,0.59]	chr19	1457870	1	CDS	CDS:EXON_MRNA	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5:ENST00000600230.1:ENST00000596134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.66936	4.93112	5.19288	0.00103174	9.22873e-5	0.0121443	0.0016906
chr5	154822471	154822524	6929639	0	-	0.54717	(0.53,0.59]	chr5	530579	1	CDS	CDS:UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000524250.5:ENST00000517938.5:ENST00000520581.5:ENST00000521518.5:ENST00000524363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.66936	4.93112	5.19288	0.00103174	9.22873e-5	0.0121443	0.0016906
chr7	16698047	16698116	8149110	0	+	0.57971	(0.53,0.59]	chr7	622166	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000452975.6:ENST00000407633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.66936	4.93112	5.19288	0.00103174	9.22873e-5	0.0121443	0.0016906
chr19	40627164	40627259	17330516	0	+	0.663158	(0.59,1]	chr19	1436066	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000595118.5:ENST00000318809.11:ENST00000599225.1:ENST00000598166.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	118	2	2.85681	4.930925	7.00504	0.00235278	2.67195e-8	0.0222204	1.80483e-6
chr10	74118368	74118468	11117651	0	+	0.45	(0.42,0.455]	chr10	846311	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	149	2	3.8352	4.930845	6.02649	1.1293e-7	2.24398e-12	6.97642e-6	4.64345e-10
chr3	53226816	53226878	4188996	0	-	0.5	(0.49,0.53]	chr3	353774	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	91	2	4.27041	4.930775000000001	5.59114	5.02516e-6	1.7452e-8	1.7067e-4	1.25644e-6
chr5	235143	235241	5848024	0	+	0.612245	(0.59,1]	chr5	459567	1	CDS	CDS:EXON_MRNA:INTRON	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000515752.5:ENST00000512962.5:ENST00000511810.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	106	2	3.74447	4.930305	6.11614	2.8028e-5	1.0124e-5	6.41211e-4	3.04701e-4
chr7	103490748	103490829	8963147	0	-	0.54321	(0.53,0.59]	chr7	686077	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	4.27526	4.93028	5.5853	1.03921e-5	9.83355e-6	2.98194e-4	2.85526e-4
chr17	7014368	7014450	16103378	0	+	0.682927	(0.59,1]	chr17	1296034	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNASEK:RNASEK-C17orf49	ENSG00000219200.12:ENSG00000161939.19	ENST00000548577.5:ENST00000546395.5:ENST00000593646.6:ENST00000552039.2:ENST00000549775.5:ENST00000552176.2:ENST00000552842.1:ENST00000549393.2:ENST00000547863.5:ENST00000552321.2:ENST00000607564.1:ENST00000547302.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	82	2	3.62482	4.930125	6.23543	7.40647e-4	3.47367e-6	0.00925967	1.13687e-4
chr19	55386271	55386357	17396153	0	+	0.651163	(0.59,1]	chr19	1448665	5	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000431533.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000558752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	107	2	3.46006	4.930025	6.39999	1.47498e-4	1.31939e-6	0.00269445	5.06228e-5
chr11	27999529	27999628	12317239	0	-	0.414141	(0.39,0.42]	chr11	952788	168	INTRON	INTRON	RP11-406D1.2	ENSG00000255094.1	ENST00000525309.1	lncRNA	lncRNA	lncRNA	lncRNA	2	68	2	4.39853	4.92969	5.46085	5.81708e-6	7.64118e-8	1.921e-4	4.42542e-6
chr8	33013781	33013880	9271698	0	+	0.40404	(0.39,0.42]	chr8	709692	171	INTRON	INTRON	RP11-11N9.4	ENSG00000247134.7	ENST00000659524.1:ENST00000666042.1:ENST00000664284.1:ENST00000666659.1:ENST00000657565.1:ENST00000670899.1:ENST00000666221.1:ENST00000671310.1:ENST00000655535.1:ENST00000665465.1:ENST00000658837.1:ENST00000500843.2:ENST00000520819.6	lncRNA	lncRNA	lncRNA	lncRNA	7	229	2	3.62267	4.929545	6.23642	2.01407e-7	1e-12	1.14224e-5	2.25522e-10
chr7	42926552	42926610	8791670	0	-	0.431034	(0.42,0.455]	chr7	670218	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.87922	4.92947	5.97972	1.04705e-4	4.13864e-7	0.0020295	1.88179e-5
chr15	50222964	50223061	14925556	0	+	0.43299	(0.42,0.455]	chr15	1173429	1	CDS	CDS:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8:ENST00000544960.1:ENST00000559938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.24133	4.929235	5.61714	0.00326918	4.98624e-6	0.0282494	1.54467e-4
chr17	22523598	22523691	16169253	0	+	0.430108	(0.42,0.455]	chr17	1304367	3	UTR5	UTR5:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.24133	4.929235	5.61714	0.00326918	4.98624e-6	0.0282494	1.54467e-4
chr16	24066016	24066116	15597724	0	+	0.39	(0.36,0.39]	chr16	1236830	301	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.46714	4.929095	5.39105	0.00155822	7.73826e-6	0.0156889	2.43421e-4
chr2	36847262	36847362	2594586	0	-	0.31	(0.29,0.33]	chr2	233508	97	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.63974	4.92905	5.21836	4.81181e-4	3.15783e-5	0.00677016	7.02218e-4
chr9	5805121	5805217	10542747	0	-	0.354167	(0.33,0.36]	chr9	799394	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.3227	4.92897	6.53524	0.00222616	2.01817e-9	0.0211992	1.95043e-7
chr7	6387211	6387283	8113900	0	+	0.402778	(0.39,0.42]	chr7	620397	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.3313	4.92878	5.52626	0.00209984	7.67816e-6	0.0204266	2.20857e-4
chr5	32406938	32407021	6519429	0	-	0.457831	(0.455,0.49]	chr5	505027	3	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.81624	4.928655	6.04107	1.48205e-4	2.38066e-7	0.00269793	1.17461e-5
chr1	147178366	147178461	453644	0	+	0.410526	(0.39,0.42]	chr1	45093	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	100	2	4.01791	4.92852	5.83913	4.78174e-5	1.31238e-11	0.00109049	2.21085e-9
chr1	42926911	42926966	966977	0	-	0.618182	(0.59,1]	chr1	101866	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.63106	4.928274999999999	5.22549	0.00537945	5.13843e-4	0.0406564	0.00665221
chr12	7157488	7157574	12717465	0	+	0.616279	(0.59,1]	chr12	987740	1	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535313.2:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.63106	4.928274999999999	5.22549	0.00537945	5.13843e-4	0.0406564	0.00665221
chr6	26251931	26252031	7101659	0	+	0.62	(0.59,1]	chr6	542881	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC9	ENSG00000275713.2	ENST00000619466.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.63106	4.928274999999999	5.22549	0.00537945	5.13843e-4	0.0406564	0.00665221
chr11	57494056	57494120	12394772	0	-	0.640625	(0.59,1]	chr11	958761	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000529452.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.65968	4.92808	5.19648	0.00413632	7.35336e-4	0.0324998	0.00921643
chr17	78972462	78972562	16698077	0	-	0.61	(0.59,1]	chr17	1376216	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5:ENST00000588508.1:ENST00000588198.5:ENST00000589527.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.65968	4.92808	5.19648	0.00413632	7.35336e-4	0.0324998	0.00921643
chr9	116735021	116735121	10820228	0	-	0.41	(0.39,0.42]	chr9	819961	11	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.14886	4.92789	5.70692	0.00415881	2.36087e-6	0.0325842	8.27472e-5
chr6	157919939	157920038	7516503	0	+	0.353535	(0.33,0.36]	chr6	573549	96	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	4.18166	4.927625	5.67359	6.04305e-7	4.97911e-11	2.87327e-5	7.31727e-9
chr2	73418722	73418822	1885857	0	+	0.38	(0.36,0.39]	chr2	178603	2	SS3_PROX	SS3_PROX:INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682889.1:ENST00000682675.1:ENST00000684148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.73346	4.927	5.12054	3.2963e-4	7.15553e-5	0.00504024	0.00137393
chr17	28325555	28325655	16175248	0	+	0.49	(0.455,0.49]	chr17	1304972	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.76882	4.92681	6.0848	1.00626e-5	1.71103e-7	3.03291e-4	8.87341e-6
chr2	70986137	70986236	2728031	0	-	0.444444	(0.42,0.455]	chr2	243102	3	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	4.48522	4.92673	5.36824	1.33083e-5	2.15617e-6	3.81624e-4	7.62296e-5
chr7	98386486	98386584	8943311	0	-	0.44898	(0.42,0.455]	chr7	682611	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	BAIAP2L1:RPS3AP26	ENSG00000006453.14:ENSG00000214389.2	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1:ENST00000398259.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	1	58	2	3.31161	4.92661	6.54161	0.00186138	4.74233e-9	0.018635	4.06115e-7
chr5	131162550	131162613	6826822	0	-	0.349206	(0.33,0.36]	chr5	522069	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000675135.1:ENST00000508495.5:ENST00000508488.2:ENST00000676117.1:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2:ENST00000504202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.76625	4.9264	5.08655	3.84608e-4	4.6453e-5	0.00531017	0.00106753
chr3	13330459	13330546	4046337	0	-	0.494253	(0.49,0.53]	chr3	339564	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	4.77195	4.92628	5.08061	1.00361e-4	2.57118e-7	0.00196575	1.25706e-5
chr15	79321977	79322045	15043037	0	+	0.558824	(0.53,0.59]	chr15	1183522	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMED3	ENSG00000166557.14	ENST00000299705.10:ENST00000424155.6:ENST00000536821.5:ENST00000543455.1:ENST00000558562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.16383	4.9259699999999995	5.68811	0.00659193	5.40688e-6	0.0454205	1.64762e-4
chrX	49571554	49571638	18695065	0	+	0.511905	(0.49,0.53]	chrX	1594994	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE12G	ENSG00000215269.5	ENST00000445148.1	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	4.68666	4.92586	5.16506	9.90322e-9	5.90266e-9	7.695e-7	5.35581e-7
chr11	314270	314331	11756466	0	+	0.557377	(0.53,0.59]	chr11	897765	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000680299.1:ENST00000679353.1:ENST00000679982.1:ENST00000681350.1:ENST00000680855.1:ENST00000680310.1:ENST00000681702.1:ENST00000681111.1:ENST00000680342.1:ENST00000680870.1:ENST00000681293.1:ENST00000680802.1:ENST00000528780.5:ENST00000328221.5:ENST00000681761.1:ENST00000681821.1:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	561	2	4.55783	4.925520000000001	5.29321	1.77047e-12	1e-12	4.07682e-10	2.25522e-10
chr5	112887095	112887183	6767449	0	-	0.556818	(0.53,0.59]	chr5	519428	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	REEP5	ENSG00000129625.13	ENST00000379638.9:ENST00000513339.5:ENST00000497856.6:ENST00000511865.6:ENST00000261482.8:ENST00000504247.1:ENST00000474542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	4.32212	4.9248899999999995	5.52766	1.38993e-5	1.84692e-7	3.94563e-4	9.51079e-6
chr12	104265396	104265484	13058274	0	+	0.454545	(0.42,0.455]	chr12	1017573	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	TXNRD1:RPL18AP3	ENSG00000198431.16:ENSG00000213442.5	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1:ENST00000462885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	12	329	2	4.48141	4.924835	5.36826	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	230280346	230280444	749810	0	+	0.397959	(0.39,0.42]	chr1	76088	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.77106	4.92479	5.07852	3.03764e-4	1.02164e-4	0.00472028	0.00183311
chr19	2248600	2248655	17195933	0	+	0.563636	(0.53,0.59]	chr19	1412821	2	UTR3	UTR3:EXON_MRNA	SF3A2	ENSG00000104897.10	ENST00000221494.10	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.1234	4.9247049999999994	6.72601	0.00390623	2.47831e-9	0.0322851	2.32242e-7
chr2	219224666	219224760	3191335	0	-	0.56383	(0.53,0.59]	chr2	280883	7	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000431715.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.1234	4.9247049999999994	6.72601	0.00390623	2.47831e-9	0.0322851	2.32242e-7
chr1	161506332	161506401	500403	0	+	0.608696	(0.59,1]	chr1	54213	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000473080.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000497474.1:ENST00000482233.1:ENST00000467525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	87	2	4.59513	4.924465	5.2538	5.85045e-4	4.29216e-6	0.00793559	1.3648e-4
chr6	170537286	170537340	8091022	0	-	0.5	(0.49,0.53]	chr6	618028	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	4.19762	4.924455	5.65129	3.38975e-6	4.23721e-7	1.23071e-4	1.92035e-5
chr1	147179225	147179324	453653	0	+	0.373737	(0.36,0.39]	chr1	45094	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-337C18.10:PDIA3P1	ENSG00000237188.5:ENSG00000180867.11	ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	5	177	2	4.62142	4.924165	5.22691	7.26179e-7	1e-12	3.39859e-5	2.25522e-10
chrX	55017485	55017575	19084641	0	-	0.444444	(0.42,0.455]	chrX	1623753	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1:ENST00000463868.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.83395	4.92382	7.01369	6.25227e-4	6.41929e-11	0.00830005	9.18234e-9
chr1	65429941	65430021	251586	0	+	0.4375	(0.42,0.455]	chr1	28771	2	CDS	CDS:EXON_MRNA:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.80064	4.923719999999999	5.0468	3.0479e-4	1.33918e-4	0.00472028	0.00229039
chr2	199344171	199344271	3115238	0	-	0.43	(0.42,0.455]	chr2	274952	149	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.80064	4.923719999999999	5.0468	3.0479e-4	1.33918e-4	0.00472028	0.00229039
chr22	37851279	37851339	18364403	0	+	0.45	(0.42,0.455]	chr22	1562152	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	119	2	3.97694	4.923655	5.87037	2.22686e-6	1.13956e-11	8.65681e-5	1.94869e-9
chr4	41949301	41949385	4809436	0	+	0.380952	(0.36,0.39]	chr4	396946	1	CDS	CDS:UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000504986.6:ENST00000506794.1:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	140	2	4.68213	4.923075	5.16402	2.17867e-10	4.87537e-11	3.00373e-8	7.17994e-9
chr6	122451663	122451754	7923800	0	-	0.384615	(0.36,0.39]	chr6	606820	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	6	179	2	4.52848	4.922915	5.31735	1.12991e-9	1e-12	1.27365e-7	2.25522e-10
chr18	23539905	23540001	17037347	0	-	0.510417	(0.49,0.53]	chr18	1400557	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	3.83319	4.9224049999999995	6.01162	1.34601e-4	3.55916e-7	0.00249552	1.64926e-5
chr12	45850920	45851019	12851686	0	+	0.464646	(0.455,0.49]	chr12	998018	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.87186	4.922219999999999	4.97258	2.33781e-4	1.84876e-4	0.00385436	0.00296795
chr8	47881415	47881467	9816605	0	-	0.326923	(0.29,0.33]	chr8	742729	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	4.73865	4.922195	5.10574	3.78205e-7	1.13854e-8	1.9544e-5	8.65016e-7
chr19	54183520	54183596	17627757	0	-	0.605263	(0.59,1]	chr19	1488035	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2:ENST00000414665.5:ENST00000453320.1:ENST00000464098.5:ENST00000474910.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.8973	4.922125	5.94695	2.15122e-4	1.71208e-5	0.00360503	4.31898e-4
chr3	128764557	128764649	4441951	0	-	0.434783	(0.42,0.455]	chr3	369079	2	EXON_PSEUDO	EXON_PSEUDO	FTH1P4	ENSG00000242992.3	ENST00000480365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	56	2	4.82853	4.9220749999999995	5.01562	1.01971e-4	1.59873e-7	0.0019861	8.38121e-6
chr14	23026010	23026088	14528759	0	-	0.512821	(0.49,0.53]	chr14	1138372	3	UTR3	UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.4279	4.92175	5.4156	0.00196987	1.84143e-5	0.0193972	4.53637e-4
chr19	45488636	45488706	17588783	0	-	0.5	(0.49,0.53]	chr19	1480175	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTN2	ENSG00000125744.12	ENST00000587597.5:ENST00000590526.5:ENST00000344680.8:ENST00000591286.5:ENST00000245923.9:ENST00000430715.6:ENST00000588036.5:ENST00000590746.5:ENST00000593129.1:ENST00000591789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.4279	4.92175	5.4156	0.00196987	1.84143e-5	0.0193972	4.53637e-4
chr2	222922707	222922754	2406141	0	+	0.446809	(0.42,0.455]	chr2	216588	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000421680.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.05954	4.921670000000001	5.7838	0.00617886	1.6512e-6	0.0439741	6.0825e-5
chr3	13388377	13388453	4046948	0	-	0.486842	(0.455,0.49]	chr3	339706	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	184	2	3.07942	4.92164	6.76386	1.46687e-4	1e-12	0.0026854	2.25522e-10
chr1	21847422	21847492	890888	0	-	0.628571	(0.59,1]	chr1	92348	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	81	2	3.66704	4.9215800000000005	6.17612	6.16458e-4	4.87365e-6	0.00822794	1.51951e-4
chr15	72351132	72351214	15369510	0	-	0.451219	(0.42,0.455]	chr15	1214450	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	127	2	3.78713	4.921455	6.05578	9.02026e-6	1.64857e-12	2.78052e-4	3.52208e-10
chr11	62789609	62789709	11974112	0	+	0.48	(0.455,0.49]	chr11	917983	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	TMEM179B:MIR6748	ENSG00000185475.11:ENSG00000284535.1	ENST00000333449.9:ENST00000533861.5:ENST00000532586.1:ENST00000532345.1:ENST00000526546.1:ENST00000610433.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	74	2	4.36307	4.921424999999999	5.47978	0.00218641	5.02175e-10	0.0208941	5.70312e-8
chr7	149589066	149589166	9126483	0	-	0.51	(0.49,0.53]	chr7	697184	251	INTRON	INTRON	ZNF767P	ENSG00000133624.13	ENST00000463567.5:ENST00000472212.5:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	38	1195	2	4.53062	4.9208099999999995	5.311	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	38709028	38709126	144539	0	+	0.581633	(0.53,0.59]	chr1	18021	2	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	4.00393	4.92062	5.8373100000000004	0.0108084	2.06883e-6	0.064368	7.35008e-5
chr15	83739683	83739783	15068267	0	+	0.56	(0.53,0.59]	chr15	1185223	223	INTRON	INTRON	ADAMTSL3	ENSG00000156218.13	ENST00000567476.1:ENST00000561483.5:ENST00000569510.5:ENST00000286744.10:ENST00000565653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.00393	4.92062	5.8373100000000004	0.0108084	2.06883e-6	0.064368	7.35008e-5
chr5	177337705	177337785	6991107	0	-	0.5125	(0.49,0.53]	chr5	534739	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000502721.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	116	2	4.73524	4.92038	5.10552	1.45408e-8	4.25883e-9	1.17124e-6	3.70993e-7
chr1	25356792	25356853	104251	0	+	0.344262	(0.33,0.36]	chr1	12224	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	103	2	4.16705	4.92032	5.67359	4.91181e-8	4.97911e-11	3.35166e-6	7.31727e-9
chr3	48768313	48768412	4170224	0	-	0.323232	(0.29,0.33]	chr3	350047	26	INTRON	INTRON	PRKAR2A	ENSG00000114302.16	ENST00000265563.13:ENST00000454963.5:ENST00000296446.12:ENST00000437821.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.41812	4.9201	5.42208	0.00162106	5.31413e-6	0.0161179	1.7831e-4
chr3	184245197	184245277	4622952	0	-	0.6125	(0.59,1]	chr3	381732	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000423996.5:ENST00000477959.1:ENST00000461415.5:ENST00000488976.5:ENST00000482048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.86977	4.91996	4.97015	0.00246014	0.00140057	0.0230058	0.0144327
chr13	113319562	113319656	13908375	0	+	0.606383	(0.59,1]	chr13	1090347	2	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.89857	4.919935000000001	4.9413	0.00191468	0.00182139	0.0190905	0.0176016
chr16	56608991	56609085	15679099	0	+	0.531915	(0.53,0.59]	chr16	1246418	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MT2A	ENSG00000125148.7	ENST00000245185.6:ENST00000563985.1:ENST00000562017.1:ENST00000561491.1:ENST00000567300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	143	2	4.67273	4.91981	5.16689	6.55143e-7	1.05183e-10	3.09247e-5	1.41904e-8
chrX	66188358	66188446	18717495	0	+	0.534091	(0.53,0.59]	chrX	1596964	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.39416	4.91967	6.44518	0.00126006	2.49042e-8	0.013837	1.70299e-6
chr18	32261842	32261942	17063447	0	-	0.44	(0.42,0.455]	chr18	1402329	130	INTRON	INTRON	GAREM1	ENSG00000141441.16	ENST00000583696.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.39468	4.919545	5.44441	0.00240483	8.23077e-6	0.0217482	2.56136e-4
chr11	6615545	6615562	12249936	0	-	0.588235	(0.53,0.59]	chr11	946846	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2:ENST00000436873.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	3.82407	4.91949	6.01491	0.0179666	6.18274e-7	0.0918323	2.65059e-5
chr12	49129315	49129390	13323983	0	-	0.573333	(0.53,0.59]	chr12	1045749	2	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000549870.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	410	2	4.19662	4.9191199999999995	5.64162	1.75681e-10	1e-12	2.48443e-8	2.25522e-10
chr20	32160051	32160111	17752577	0	+	0.5	(0.49,0.53]	chr20	1498527	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.84744	4.918889999999999	4.99034	3.70203e-4	1.6002e-4	0.00515475	0.00286408
chr5	134923862	134923955	6846839	0	-	0.516129	(0.49,0.53]	chr5	523924	7	EXON_PSEUDO	EXON_PSEUDO	MTCYBP18	ENSG00000244921.2	ENST00000501056.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	29	2	4.89405	4.918839999999999	4.94363	2.57983e-4	2.3417e-4	0.00419998	0.00355764
chr10	70204872	70204915	11560629	0	-	0.534884	(0.53,0.59]	chr10	879630	1	CDS	CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000610026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.43863	4.918815	5.399	0.00254763	3.02387e-5	0.0233955	6.78876e-4
chr17	42125424	42125513	16545936	0	-	0.573034	(0.53,0.59]	chr17	1356948	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.43863	4.918815	5.399	0.00254763	3.02387e-5	0.0233955	6.78876e-4
chr1	161591228	161591313	501281	0	+	0.447059	(0.42,0.455]	chr1	54308	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000465075.6:ENST00000473530.6:ENST00000611236.1:ENST00000473712.6:ENST00000482226.2	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	1	47	2	4.16236	4.918609999999999	5.67486	1.83138e-5	3.42598e-6	4.99708e-4	1.12506e-4
chr3	49124189	49124286	4172747	0	-	0.628866	(0.59,1]	chr3	350546	1	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000480640.1:ENST00000538659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.34487	4.918355	5.49184	0.0123678	1.61513e-4	0.0705839	0.00265627
chr11	1755001	1755028	12230439	0	-	0.703704	(0.59,1]	chr11	944390	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000497544.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	87	2	3.28861	4.918145	6.54768	0.0028753	5.34464e-7	0.0256141	2.34665e-5
chr3	32996956	32997044	4110937	0	-	0.454545	(0.42,0.455]	chr3	343424	5	UTR3	UTR3:EXON_MRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.54792	4.917870000000001	5.28782	9.66045e-4	3.65299e-5	0.0115185	7.95843e-4
chr4	53444047	53444103	4832294	0	+	0.446429	(0.42,0.455]	chr4	398401	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FIP1L1:RP11-231C18.3	ENSG00000145216.16:ENSG00000282278.1	ENST00000337488.11:ENST00000358575.9:ENST00000306932.10:ENST00000505125.5:ENST00000507166.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1:ENST00000511055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.54792	4.917870000000001	5.28782	9.66045e-4	3.65299e-5	0.0115185	7.95843e-4
chr19	40451363	40451441	17566519	0	-	0.576923	(0.53,0.59]	chr19	1476392	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	314	2	4.61699	4.917575	5.21816	1.18544e-10	1e-12	1.74617e-8	2.25522e-10
chr11	60897898	60897951	12402769	0	-	0.528302	(0.49,0.53]	chr11	959891	2	CDS	CDS:EXON_MRNA:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1:ENST00000539960.1:ENST00000539180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.51312	4.917455	5.32179	0.00156636	2.63311e-5	0.0156889	6.73425e-4
chr3	14139238	14139297	3319467	0	+	0.542373	(0.53,0.59]	chr3	292101	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	4.04528	4.917275	5.78927	4.28524e-5	2.83401e-6	9.98851e-4	9.62519e-5
chr9	5128073	5128172	10167897	0	+	0.323232	(0.29,0.33]	chr9	765751	14	UTR3	UTR3:EXON_MRNA	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.80322	4.91723	5.03124	2.14303e-4	9.06368e-5	0.00359478	0.00167558
chr6	26216362	26216452	7647240	0	-	0.566667	(0.53,0.59]	chr6	582558	1	CDS	CDS:EXON_MRNA	H2BC8	ENSG00000273802.2	ENST00000541790.3	protein_coding	protein_coding	protein_coding	protein_coding	18	637	2	4.61724	4.91722	5.2172	1e-12	1e-12	2.46312e-10	2.25522e-10
chr7	101216009	101216020	8953744	0	-	0.454545	(0.42,0.455]	chr7	684711	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000424135.5:ENST00000489927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.68196	4.9170750000000005	6.15219	1.87505e-5	1.13536e-7	5.08634e-4	6.23788e-6
chr13	95792019	95792118	13848746	0	+	0.515152	(0.49,0.53]	chr13	1086433	11	UTR3	UTR3:EXON_MRNA	DNAJC3	ENSG00000102580.15	ENST00000602402.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.55929	4.9170300000000005	5.27477	0.00116196	4.14521e-5	0.0130851	8.8376e-4
chr19	50838363	50838463	17377259	0	+	0.53	(0.49,0.53]	chr19	1444887	67	INTRON	INTRON	AC011523.2	ENSG00000267968.1	ENST00000598079.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.55929	4.9170300000000005	5.27477	0.00116196	4.14521e-5	0.0130851	8.8376e-4
chr2	96287862	96287915	2790405	0	-	0.490566	(0.49,0.53]	chr2	248757	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000480615.1:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.55929	4.9170300000000005	5.27477	0.00116196	4.14521e-5	0.0130851	8.8376e-4
chr1	161589647	161589733	501261	0	+	0.55814	(0.53,0.59]	chr1	54297	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000496692.6:ENST00000502411.5:ENST00000466542.6:ENST00000465075.6:ENST00000473530.6:ENST00000611236.1:ENST00000473712.6:ENST00000482226.2	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:retained_intron:lncRNA:processed_transcript:polymorphic_pseudogene	1	57	2	3.8188	4.916855	6.01491	1.54941e-4	6.18274e-7	0.0028049	2.65059e-5
chr11	57739141	57739200	11952423	0	+	0.576271	(0.53,0.59]	chr11	914738	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	4.08599	4.915785	5.74558	3.38473e-5	3.61407e-6	7.45971e-4	1.29307e-4
chrX	141907304	141907404	18883539	0	+	0.59	(0.53,0.59]	chrX	1608997	20	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	4.08599	4.915785	5.74558	3.38473e-5	3.61407e-6	7.45971e-4	1.29307e-4
chr10	87776373	87776427	11608098	0	-	0.444444	(0.42,0.455]	chr10	884041	2	CDS	CDS:UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.40276	4.915725	5.42869	0.0017618	1.60756e-5	0.0180053	4.07445e-4
chr8	63026226	63026296	9852025	0	-	0.442857	(0.42,0.455]	chr8	745340	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GGH	ENSG00000137563.13	ENST00000677482.1:ENST00000677459.1:ENST00000678069.1:ENST00000523788.2:ENST00000518466.6:ENST00000260118.7:ENST00000677919.1:ENST00000677327.1:ENST00000679326.1:ENST00000520609.5:ENST00000678045.1:ENST00000518113.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	3.8515	4.91561	5.97972	0.0119089	4.13864e-7	0.0686664	1.88179e-5
chr1	160355654	160355705	496781	0	+	0.372549	(0.36,0.39]	chr1	53493	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1:ENST00000491390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	4.73146	4.915430000000001	5.0994	4.68763e-5	3.06966e-7	0.00107286	1.45846e-5
chr9	100006505	100006576	10772773	0	-	0.380282	(0.36,0.39]	chr9	815433	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	4.73146	4.915430000000001	5.0994	4.68763e-5	3.06966e-7	0.00107286	1.45846e-5
chr11	61802863	61802926	12405931	0	-	0.52381	(0.49,0.53]	chr11	960585	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5:ENST00000496123.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	246	2	3.36218	4.91523	6.46828	3.08883e-8	1e-12	2.24486e-6	2.25522e-10
chr1	21864919	21864996	891098	0	-	0.727273	(0.59,1]	chr1	92454	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	4.03263	4.9150849999999995	5.79754	1.11254e-4	3.712e-5	0.00213212	8.06532e-4
chr1	205088002	205088100	1459083	0	-	0.357143	(0.33,0.36]	chr1	147068	20	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	4.21361	4.915015	5.61642	1.64389e-5	2.97369e-6	4.56784e-4	9.99199e-5
chr2	27392977	27393075	2570548	0	-	0.377551	(0.36,0.39]	chr2	231573	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PPM1G:FTH1P3	ENSG00000115241.11:ENSG00000213453.3	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1:ENST00000394290.3	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	2	85	2	4.23248	4.914935	5.59739	1.28371e-5	1.2737e-10	3.70041e-4	1.68067e-8
chr1	161509989	161510074	500442	0	+	0.505882	(0.49,0.53]	chr1	54221	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	223	2	4.11059	4.914835	5.71908	2.18887e-9	1e-12	2.26671e-7	2.25522e-10
chr20	32234472	32234561	17752928	0	+	0.58427	(0.53,0.59]	chr20	1498583	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.30195	4.914804999999999	5.52766	0.00421989	1.38993e-5	0.0328662	3.94563e-4
chr4	56502818	56502914	4849157	0	+	0.333333	(0.33,0.36]	chr4	399579	11	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	4.6418	4.9148	5.1878	6.89834e-7	5.76385e-9	3.24522e-5	4.84322e-7
chr17	28554219	28554319	16485698	0	-	0.57	(0.53,0.59]	chr17	1347683	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	77	2	4.18853	4.91463	5.64073	7.00135e-6	5.25589e-7	2.25852e-4	2.31205e-5
chr6	12514636	12514724	7056034	0	+	0.579545	(0.53,0.59]	chr6	540326	7	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	417	2	4.30149	4.91385	5.52621	7.28084e-12	1e-12	1.30936e-9	2.46312e-10
chr19	14621807	14621894	17481471	0	-	0.482759	(0.455,0.49]	chr19	1464658	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRE3:ITGB1P1	ENSG00000131355.15:ENSG00000269378.1	ENST00000344373.8:ENST00000443157.6:ENST00000253673.6:ENST00000599900.5:ENST00000596032.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	85	2	4.21623	4.91339	5.61055	3.16146e-6	2.67302e-8	1.16228e-4	1.80486e-6
chr1	109030150	109030234	396816	0	+	0.404762	(0.39,0.42]	chr1	38397	2	EXON_PSEUDO	EXON_PSEUDO	RP11-20O24.1	ENSG00000228665.2	ENST00000434429.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	50	2	4.62228	4.913315	5.20435	2.91423e-5	7.53778e-7	7.26551e-4	3.14118e-5
chr4	87892039	87892138	4942236	0	+	0.484848	(0.455,0.49]	chr4	406011	3	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	80	2	2.96139	4.912855	6.86432	2.95549e-4	2.24717e-10	0.00467597	2.793e-8
chr1	65226574	65226674	249722	0	+	0.5	(0.49,0.53]	chr1	28617	5	UTR3	UTR3:EXON_MRNA	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.74438	4.912495	5.08061	5.91752e-4	1.00361e-4	0.00743488	0.00196575
chr1	43361119	43361182	164225	0	+	0.619048	(0.59,1]	chr1	20863	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000482046.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.54183	4.912335000000001	5.28284	0.0070583	4.04404e-4	0.0478044	0.00550292
chr1	203707079	203707151	669533	0	+	0.5	(0.49,0.53]	chr1	67432	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.79086	4.912335000000001	5.03381	4.20783e-4	1.49689e-4	0.00611538	0.0024973
chr6	52403889	52403985	7177649	0	+	0.625	(0.59,1]	chr6	555098	7	CDS	CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.54183	4.912335000000001	5.28284	0.0070583	4.04404e-4	0.0478044	0.00550292
chr11	65578778	65578877	11985269	0	+	0.545455	(0.53,0.59]	chr11	920540	1	SS3_PROX	SS3_PROX:INTRON	EHBP1L1	ENSG00000173442.13	ENST00000533237.5:ENST00000309295.9:ENST00000634639.1:ENST00000531106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.98115	4.912235	5.84332	6.28226e-5	1.90853e-6	0.00124286	7.59317e-5
chrX	19351333	19351407	18604859	0	+	0.581081	(0.53,0.59]	chrX	1589017	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000423505.5:ENST00000422285.7:ENST00000492364.1:ENST00000355808.9:ENST00000379805.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	4.18373	4.912229999999999	5.64073	1.85867e-5	7.00135e-6	4.56627e-4	2.25852e-4
chr6	32155870	32155885	7118450	0	+	0.466667	(0.455,0.49]	chr6	546923	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.6621	4.912125	5.16215	7.84472e-4	5.04348e-5	0.00927662	0.00113788
chr7	67210726	67210826	8309922	0	+	0.48	(0.455,0.49]	chr7	633495	150	INTRON	INTRON	TYW1	ENSG00000198874.13	ENST00000615572.4:ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.6621	4.912125	5.16215	7.84472e-4	5.04348e-5	0.00927662	0.00113788
chr16	28388132	28388207	15905061	0	-	0.626667	(0.59,1]	chr16	1273463	2	CDS	CDS:EXON_MRNA	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.57037	4.912084999999999	5.2538	0.0054994	5.85045e-4	0.0402071	0.00793559
chr11	62625914	62625924	12409694	0	-	0.5	(0.49,0.53]	chr11	961225	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.68499	4.911985	6.13898	2.9991e-4	1.37435e-7	0.00472028	7.34618e-6
chr5	31823040	31823136	6517293	0	-	0.416667	(0.39,0.42]	chr5	504781	6	EXON_PSEUDO	EXON_PSEUDO	CTD-2290C23.1	ENSG00000224282.3	ENST00000463864.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	52	2	3.44923	4.9119150000000005	6.3746	0.00105208	1.52204e-8	0.0123035	1.11346e-6
chr6	33417246	33417310	7669558	0	-	0.578125	(0.53,0.59]	chr6	587675	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.1234	4.91183	6.70026	0.00390623	3.08274e-9	0.0322851	2.80081e-7
chr20	1277856	1277956	17646617	0	+	0.54	(0.53,0.59]	chr20	1491668	107	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.55274	4.911805	5.27087	0.00167999	5.9416e-5	0.0164993	0.00130151
chr14	18999064	18999164	14165517	0	+	0.57	(0.53,0.59]	chr14	1108472	5	UTR3	UTR3:EXON_MRNA	POTEM	ENSG00000222036.8	ENST00000547889.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.5586	4.911755	5.26491	0.00161229	6.31437e-5	0.0169168	0.00124286
chr16	90095978	90096072	15813475	0	+	0.542553	(0.53,0.59]	chr16	1259605	10	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBB8P7	ENSG00000261812.6	ENST00000564451.1:ENST00000563927.1:ENST00000567960.2:ENST00000567207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	32	2	4.5586	4.911755	5.26491	0.00161229	6.31437e-5	0.0169168	0.00124286
chr18	35990605	35990703	17077737	0	-	0.469388	(0.455,0.49]	chr18	1403036	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000587563.5:ENST00000585879.1:ENST00000399022.9:ENST00000590898.5:ENST00000357384.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.76048	4.91165	5.06282	3.99985e-4	1.16789e-4	0.00588767	0.0020505
chr20	49278624	49278641	17812168	0	+	0.470588	(0.455,0.49]	chr20	1506707	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.76048	4.91165	5.06282	3.99985e-4	1.16789e-4	0.00588767	0.0020505
chr17	16428316	16428387	16141958	0	+	0.492958	(0.49,0.53]	chr17	1300711	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRPV2:AC093484.4	ENSG00000187688.15:ENSG00000239203.1	ENST00000338560.12:ENST00000441875.1:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	1	54	2	3.60476	4.911405	6.21805	4.52633e-4	7.46967e-8	0.00642319	4.33833e-6
chr1	21854192	21854267	890971	0	-	0.64	(0.59,1]	chr1	92394	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	3.70806	4.9111650000000004	6.11427	5.14321e-4	6.89731e-6	0.00719062	0.00020353099999999999
chrX	74031461	74031538	18741245	0	+	0.558442	(0.53,0.59]	chrX	1599351	1	EXON_PSEUDO	EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	JPX:RPSAP14	ENSG00000225470.8:ENSG00000233984.1	ENST00000640437.1:ENST00000602772.5:ENST00000429143.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	100	2	2.9976	4.9111199999999995	6.82464	7.21865e-5	1.06121e-9	0.00152286	1.10387e-7
chr3	185418679	185418778	4625656	0	-	0.494949	(0.49,0.53]	chr3	382004	13	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	170	2	4.74606	4.911065	5.07607	1.87952e-8	2.05924e-11	1.45941e-6	3.32608e-9
chr17	28880182	28880277	16488320	0	-	0.473684	(0.455,0.49]	chr17	1348326	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	163	2	4.46598	4.91054	5.3551	2.65925e-9	5.49105e-12	2.4747e-7	1.11029e-9
chr12	57232773	57232843	12902134	0	+	0.571429	(0.53,0.59]	chr12	1005205	2	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000556689.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	4.48151	4.910495	5.33948	4.08763e-5	2.61211e-6	9.64741e-4	8.99269e-5
chr17	43002871	43002920	16230921	0	+	0.428571	(0.42,0.455]	chr17	1313748	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	89	2	3.72956	4.9103650000000005	6.09117	3.07949e-7	7.60033e-8	1.46234e-5	4.89668e-6
chr18	55557215	55557315	17131881	0	-	0.46	(0.455,0.49]	chr18	1406687	39	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000540999.5:ENST00000537578.5:ENST00000568740.5:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000398339.5:ENST00000564403.6:ENST00000627136.2:ENST00000566514.5:ENST00000630319.2:ENST00000568169.5:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000563824.5:ENST00000568147.5:ENST00000563888.6:ENST00000564343.5:ENST00000627784.2:ENST00000562543.5:ENST00000562847.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000627568.2:ENST00000637941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.73589	4.910345	6.0848	2.30579e-4	1.71103e-7	0.00382267	8.87341e-6
chr3	184245487	184245587	4622958	0	-	0.54	(0.53,0.59]	chr3	381737	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000423996.5:ENST00000461415.5:ENST00000488976.5:ENST00000482048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.86232	4.910285	4.95825	4.57805e-4	2.87508e-4	0.00608573	0.00457439
chr17	7244550	7244635	16429127	0	-	0.564706	(0.53,0.59]	chr17	1339342	1	CDS	CDS:EXON_MRNA	CTD-2545G14.7:CTDNEP1	ENSG00000262526.2:ENSG00000175826.12	ENST00000570760.2:ENST00000574322.6:ENST00000570828.5:ENST00000573600.5:ENST00000574205.5:ENST00000318988.10:ENST00000572043.5:ENST00000570484.1:ENST00000576613.5:ENST00000575783.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.86823	4.91028	4.95233	4.35895e-4	3.02711e-4	0.00623608	0.00439897
chr2	157296393	157296453	2152491	0	+	0.416667	(0.39,0.42]	chr2	198595	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.74171	4.910115	5.07852	1.02164e-4	2.6028e-7	0.00183311	1.4243e-5
chr10	118933028	118933117	11716194	0	-	0.505618	(0.49,0.53]	chr10	893738	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-498J9.2:LDHAP5	ENSG00000229272.2:ENSG00000213574.2	ENST00000663084.1:ENST00000394996.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	102	2	4.57324	4.909515000000001	5.24579	4.073e-5	1.03876e-9	9.64741e-4	1.08471e-7
chr5	149368460	149368554	6290593	0	+	0.659574	(0.59,1]	chr5	490742	6	CDS	CDS:UTR3:EXON_MRNA	PCYOX1L	ENSG00000145882.11	ENST00000274569.9:ENST00000511945.5:ENST00000505669.5:ENST00000503240.5:ENST00000514349.1:ENST00000507621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.7151	4.90928	5.10346	0.00412279	8.40506e-4	0.0325842	0.00981548
chr7	45104098	45104177	8801015	0	-	0.607595	(0.59,1]	chr7	671554	1	CDS	CDS:EXON_MRNA:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000483615.1:ENST00000488222.5:ENST00000484326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.7151	4.90928	5.10346	0.00412279	8.40506e-4	0.0325842	0.00981548
chr11	44107986	44108073	11926202	0	+	0.413793	(0.39,0.42]	chr11	911522	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000529186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.76141	4.90921	6.05701	2.14058e-4	1.91744e-7	0.00359478	9.81202e-6
chr2	161371171	161371246	2164989	0	+	0.506667	(0.49,0.53]	chr2	199380	1	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	3.52514	4.90907	6.293	4.98361e-5	4.1349e-8	0.0011306	2.61265e-6
chr19	19119929	19120029	17502053	0	-	0.65	(0.59,1]	chr19	1468646	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000591443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	4.18569	4.90827	5.63085	8.43355e-5	5.09234e-5	0.0015859	0.00114531
chr1	11956916	11957014	45307	0	+	0.571429	(0.53,0.59]	chr1	5743	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000196061.5:ENST00000429000.6:ENST00000465920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	172	2	3.59295	4.908135	6.22332	4.77401e-6	1e-12	1.64158e-4	2.25522e-10
chr22	47810078	47810178	18407414	0	+	0.51	(0.49,0.53]	chr22	1567583	109	INTRON	INTRON	RP11-191L9.4	ENSG00000224271.7	ENST00000664761.1:ENST00000650683.1:ENST00000651536.1:ENST00000652656.1:ENST00000651445.1:ENST00000423737.5:ENST00000650660.1:ENST00000651056.1:ENST00000652611.1:ENST00000652399.1:ENST00000652123.1:ENST00000652505.1:ENST00000652030.2:ENST00000651403.1:ENST00000652228.1:ENST00000651124.1:ENST00000650972.1:ENST00000651637.1:ENST00000651003.1:ENST00000651948.2:ENST00000651293.1:ENST00000651939.1:ENST00000650787.1:ENST00000651517.1:ENST00000651662.1:ENST00000651638.1:ENST00000670853.1:ENST00000652080.1:ENST00000651294.1:ENST00000652164.1:ENST00000651538.1:ENST00000651033.1:ENST00000651584.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	3.8967	4.908025	5.91935	0.0128791	5.27035e-7	0.0725185	2.57927e-5
chr4	165337857	165337926	5206909	0	+	0.333333	(0.33,0.36]	chr4	420263	2	CDS	CDS:UTR5:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	5	160	2	4.37849	4.907205	5.43592	1.08837e-7	1e-12	6.77188e-6	2.25522e-10
chr1	201006984	201007082	1445387	0	-	0.489796	(0.455,0.49]	chr1	144921	9	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.41041	4.907055	5.4037	0.00218771	1.20695e-5	0.0202707	3.52389e-4
chr1	89934158	89934257	349105	0	+	0.353535	(0.33,0.36]	chr1	34169	11	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.83198	4.906515	4.98105	1.88689e-4	1.32493e-4	0.0032588	0.00227943
chr6	8079989	8080030	7589984	0	-	0.341463	(0.33,0.36]	chr6	578981	1	CDS	CDS:EXON_MRNA:INTRON	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.83198	4.906515	4.98105	1.88689e-4	1.32493e-4	0.0032588	0.00227943
chr10	22534950	22535048	11411099	0	-	0.408163	(0.39,0.42]	chr10	869854	2	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.49324	4.906465	5.31969	0.00108192	2.68682e-5	0.0124943	6.19143e-4
chr9	88016496	88016595	10348015	0	+	0.515152	(0.49,0.53]	chr9	778851	3	EXON_PSEUDO	EXON_PSEUDO	RPS10P3	ENSG00000217716.3	ENST00000439253.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	55	2	3.51981	4.906405	6.293	6.88328e-4	4.1349e-8	0.00876781	2.61265e-6
chr19	58545424	58545486	17413292	0	+	0.483871	(0.455,0.49]	chr19	1451175	1	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.81624	4.90611	5.99598	1.48205e-4	3.33072e-7	0.00269793	1.56608e-5
chrX	49543496	49543557	18694810	0	+	0.57377	(0.53,0.59]	chrX	1594922	2	CDS	CDS:EXON_MRNA	GAGE12D	ENSG00000227488.2	ENST00000405679.3	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	3.0548	4.906085	6.75737	5.01853e-5	1.77309e-9	0.00103096	1.87805e-7
chr1	207505993	207506083	687419	0	+	0.488889	(0.455,0.49]	chr1	69682	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CR1	ENSG00000203710.12	ENST00000400960.7:ENST00000367050.8:ENST00000367049.9:ENST00000530487.5:ENST00000367051.6:ENST00000367053.6:ENST00000367052.6:ENST00000534202.5:ENST00000529814.1:ENST00000450439.5:ENST00000436595.1:ENST00000434033.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.50805	4.90598	5.30391	0.00122223	3.12735e-5	0.0135383	6.97306e-4
chr6	36108447	36108546	7132615	0	+	0.474747	(0.455,0.49]	chr6	549275	1	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.50805	4.90598	5.30391	0.00122223	3.12735e-5	0.0135383	6.97306e-4
chr11	6612964	6613063	12249905	0	-	0.454545	(0.42,0.455]	chr11	946834	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.67981	4.905749999999999	5.13169	5.38444e-4	8.60227e-5	0.00744072	0.00160731
chr2	208248562	208248660	3142552	0	-	0.438776	(0.42,0.455]	chr2	277717	3	CDS	CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000415282.5:ENST00000462386.5:ENST00000417583.5:ENST00000451391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.67981	4.905749999999999	5.13169	5.38444e-4	8.60227e-5	0.00744072	0.00160731
chr11	121307323	121307412	12176658	0	+	0.426966	(0.42,0.455]	chr11	939026	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SC5D	ENSG00000109929.10	ENST00000264027.9:ENST00000534230.5:ENST00000392789.2:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	4.4415	4.90487	5.36824	1.33083e-5	2.94164e-6	3.81624e-4	9.91141e-5
chr16	85674222	85674321	15798095	0	+	0.535354	(0.53,0.59]	chr16	1257094	18	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.77222	4.904635	5.03705	6.67251e-4	0.00020199200000000001	0.00867533	0.00317801
chr21	31210415	31210515	18207592	0	-	0.46	(0.455,0.49]	chr21	1545184	2	SS3_PROX	SS3_PROX:INTRON	TIAM1	ENSG00000156299.13	ENST00000286827.7:ENST00000541036.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	3.81275	4.904365	5.99598	0.0138827	3.33072e-7	0.0760883	1.56608e-5
chr9	78328986	78329086	10321089	0	+	0.47	(0.455,0.49]	chr9	777289	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	3.81275	4.904365	5.99598	0.0138827	3.33072e-7	0.0760883	1.56608e-5
chr6	122456480	122456565	7923853	0	-	0.411765	(0.39,0.42]	chr6	606840	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	3.98668	4.904109999999999	5.82154	2.20532e-6	1.5735e-11	8.59066e-5	2.61287e-9
chr7	77709136	77709236	8350476	0	+	0.46	(0.455,0.49]	chr7	637071	114	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.36307	4.903945	5.44482	0.00218641	1.36044e-5	0.0208941	3.54469e-4
chr12	7817966	7818034	13192389	0	-	0.397059	(0.39,0.42]	chr12	1033381	3	CDS	CDS:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.66467	4.903935000000001	6.1432	3.60066e-4	9.87413e-8	0.00544157	5.5198e-6
chr19	35166171	35166250	17303861	0	+	0.493671	(0.49,0.53]	chr19	1430629	1	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	4.20376	4.9038900000000005	5.60402	1.43152e-5	5.78803e-6	4.04062e-4	1.75119e-4
chr19	6532188	6532285	17213497	0	+	0.536082	(0.53,0.59]	chr19	1415913	5	INTRON	INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	4.28604	4.90386	5.52168	1.48967e-5	9.59485e-6	3.81697e-4	2.93255e-4
chr15	34850104	34850201	15206580	0	-	0.494845	(0.49,0.53]	chr15	1197255	11	EXON_PSEUDO	EXON_PSEUDO	TUBAP11	ENSG00000259751.1	ENST00000559655.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	72	2	4.34495	4.9038450000000005	5.46274	1.13094e-5	1.28445e-7	3.3464e-4	6.93472e-6
chr19	44974438	44974517	17350135	0	+	0.531646	(0.53,0.59]	chr19	1439348	1	CDS	CDS:EXON_MRNA:INTRON	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000585961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	83	2	4.46764	4.903560000000001	5.33948	4.08763e-5	5.65391e-8	9.64741e-4	3.41755e-6
chr3	9893277	9893377	3300579	0	+	0.49	(0.455,0.49]	chr3	290135	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	JAGN1	ENSG00000171135.15	ENST00000489724.2:ENST00000647897.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.24913	4.90354	6.55795	0.00239443	3.59716e-9	0.0225356	3.19904e-7
chr15	89185423	89185516	15093338	0	+	0.526882	(0.49,0.53]	chr15	1187074	1	CDS	CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000568308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	3.93377	4.902839999999999	5.87191	3.06483e-6	9.67449e-7	1.13887e-4	3.88631e-5
chr6	169431306	169431401	8087289	0	-	0.4	(0.39,0.42]	chr6	617624	2	INTRON	INTRON	RP1-137D17.4:RP1-137D17.2	ENSG00000285733.1:ENSG00000272848.2	ENST00000648086.1:ENST00000650382.1:ENST00000607876.2:ENST00000649579.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	108	2	4.78838	4.90247	5.01656	1.7675e-7	2.51498e-10	1.03066e-5	3.07762e-8
chr12	56273656	56273726	13349855	0	-	0.457143	(0.455,0.49]	chr12	1051006	2	CDS	CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6:ENST00000546621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	4.32883	4.90241	5.47599	7.64978e-6	6.31002e-6	2.4151e-4	1.88287e-4
chr7	44799826	44799878	8261646	0	+	0.442308	(0.42,0.455]	chr7	629469	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	239	2	4.65904	4.90189	5.14474	8.6563e-12	1.41698e-12	1.52967e-9	3.36328e-10
chr9	125693718	125693818	10858878	0	-	0.24	[0,0.29]	chr9	822521	207	INTRON	INTRON	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000394060.7:ENST00000427078.5:ENST00000373496.3:ENST00000433483.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.59959	4.901815	5.20404	7.13769e-4	2.26341e-5	0.0085671400000000009	5.9266e-4
chr19	10316879	10316975	17459298	0	-	0.583333	(0.53,0.59]	chr19	1460720	8	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	252	2	4.12722	4.9017800000000005	5.67634	2.89154e-9	1e-12	2.88426e-7	2.25522e-10
chr3	185491536	185491636	4625817	0	-	0.31	(0.29,0.33]	chr3	382040	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	4.80322	4.9016	4.99998	2.14303e-4	2.93757e-8	0.00359478	1.96184e-6
chr11	4121578	4121656	11774296	0	+	0.397436	(0.39,0.42]	chr11	901003	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5:ENST00000526304.5:ENST00000528470.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.63883	4.9011499999999995	5.16347	5.68159e-4	6.48089e-5	0.0077844	0.00126536
chr1	155172737	155172830	1306468	0	-	0.612903	(0.59,1]	chr1	131778	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRTCAP2:RP11-201K10.3	ENSG00000163463.13:ENSG00000273088.2	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000473363.3:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	3.78188	4.90109	6.0203	3.33896e-4	1.68221e-5	0.00472923	4.64895e-4
chr15	38352960	38353060	14871400	0	+	0.27	[0,0.29]	chr15	1167527	14	UTR3	UTR3:EXON_MRNA	SPRED1	ENSG00000166068.13	ENST00000299084.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.73168	4.901065	5.07045	3.88478e-4	5.08054e-5	0.00534839	0.00114377
chr11	61878154	61878215	12406276	0	-	0.47541	(0.455,0.49]	chr11	960684	1	CDS	CDS:EXON_MRNA:PRIMIRNA	FADS3:MIR6746	ENSG00000221968.9:ENSG00000277892.1	ENST00000527697.5:ENST00000533676.5:ENST00000278829.7:ENST00000529404.5:ENST00000527379.5:ENST00000525588.5:ENST00000531956.5:ENST00000534223.5:ENST00000526294.5:ENST00000414624.6:ENST00000620971.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	2	70	2	4.39836	4.90103	5.4037	1.20695e-5	7.82907e-8	3.52389e-4	4.52822e-6
chr6	75638492	75638592	7246548	0	+	0.37	(0.36,0.39]	chr6	558633	33	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.5987	4.901005	5.20331	9.0208e-4	2.53222e-5	0.0102618	6.51851e-4
chr12	7929777	7929871	13193269	0	-	0.510638	(0.49,0.53]	chr12	1033507	2	CDS	CDS:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000479059.3:ENST00000490763.1:ENST00000495813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	90	2	4.58452	4.900785000000001	5.21705	9.98532e-7	6.26966e-9	4.42534e-5	5.16133e-7
chr7	6024301	6024394	8662407	0	-	0.569892	(0.53,0.59]	chr7	662531	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1:ENST00000490523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	173	2	4.52479	4.90055	5.27631	3.43955e-8	3.62435e-11	2.47393e-6	5.51447e-9
chr7	56074585	56074660	8290678	0	+	0.613333	(0.59,1]	chr7	631546	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000529457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	80	2	3.62482	4.90047	6.17612	7.40647e-4	4.87365e-6	0.00925967	1.51951e-4
chr11	119027627	119027724	12626364	0	-	0.56701	(0.53,0.59]	chr11	979721	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	103	2	4.4923	4.899850000000001	5.3074	2.39218e-6	4.01158e-9	9.1799e-5	3.51297e-7
chr8	70583243	70583324	9881369	0	-	0.419753	(0.39,0.42]	chr8	746918	2	CDS	CDS:EXON_MRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	4.16663	4.89964	5.63265	1.84729e-5	1.06236e-10	5.02409e-4	1.4327e-8
chr5	176246343	176246443	6400593	0	+	0.42	(0.39,0.42]	chr5	497169	69	INTRON	INTRON	SIMC1	ENSG00000170085.18	ENST00000443967.5:ENST00000430704.6:ENST00000341199.10:ENST00000495423.1:ENST00000429602.7:ENST00000508769.1:ENST00000467472.1:ENST00000514128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.1206	4.89958	5.67856	0.00597537	1.29189e-6	0.0428562	5.48279e-5
chr16	18793351	18793370	15877079	0	-	0.368421	(0.36,0.39]	chr16	1269298	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	4.32265	4.899570000000001	5.47649	6.3224e-6	4.3709e-6	1.88366e-4	1.52262e-4
chr11	118340374	118340447	12624427	0	-	0.369863	(0.36,0.39]	chr11	979316	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CD3D	ENSG00000167286.10	ENST00000300692.9:ENST00000534687.5:ENST00000529594.5:ENST00000392884.2:ENST00000526561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.32237	4.899430000000001	5.47649	0.00273222	4.3709e-6	0.0237575	1.52262e-4
chr1	32093692	32093790	126274	0	+	0.530612	(0.53,0.59]	chr1	15529	13	INTRON	INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000336294.10:ENST00000441402.5:ENST00000468135.5:ENST00000476968.5:ENST00000498613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.16383	4.899285	5.63474	0.00659193	7.53339e-6	0.0454205	2.17987e-4
chr16	58520773	58520865	15966220	0	-	0.5	(0.49,0.53]	chr16	1281046	10	UTR3	UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.67972	4.8992000000000004	5.11868	6.94757e-4	9.66505e-5	0.00876781	0.00175267
chr5	76732511	76732610	6044915	0	+	0.515152	(0.49,0.53]	chr5	474229	3	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.67972	4.8992000000000004	5.11868	6.94757e-4	9.66505e-5	0.00876781	0.00175267
chr1	150755075	150755150	1290311	0	-	0.44	(0.42,0.455]	chr1	128455	2	CDS	CDS:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1:ENST00000679582.1:ENST00000480760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.24133	4.899175	5.55702	0.00326918	7.30994e-6	0.0282494	2.13219e-4
chr5	94570766	94570865	6710417	0	-	0.414141	(0.39,0.42]	chr5	516594	14	INTRON	INTRON	KIAA0825	ENSG00000185261.15	ENST00000682413.1:ENST00000513200.7:ENST00000329378.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.14886	4.89902	5.64918	0.00415881	3.47137e-6	0.0325842	1.13687e-4
chr2	214847206	214847286	2374861	0	+	0.5875	(0.53,0.59]	chr2	213368	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	SNHG31:RPL10P6	ENSG00000229267.3:ENSG00000230076.1	ENST00000655899.1:ENST00000670391.1:ENST00000664818.1:ENST00000607412.1:ENST00000457497.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	78	2	4.27016	4.89891	5.52766	1.38993e-5	2.78714e-7	3.94563e-4	1.34066e-5
chr17	44350469	44350569	16234908	0	+	0.65	(0.59,1]	chr17	1314566	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1:ENST00000586443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	159	2	4.65298	4.89843	5.14388	3.73496e-6	1.26314e-7	1.32675e-4	6.83343e-6
chr17	44375590	44375653	16558023	0	-	0.603175	(0.59,1]	chr17	1359424	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.63106	4.89841	5.16576	0.00537945	6.55716e-4	0.0406564	0.0080931
chr17	44074679	44074770	16234033	0	+	0.648352	(0.59,1]	chr17	1314321	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.65968	4.898235	5.13679	0.00413632	9.28022e-4	0.0324998	0.0111748
chr11	3826977	3827074	12238976	0	-	0.546392	(0.53,0.59]	chr11	945691	1	UTR3	UTR3:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.55001	4.898015	6.24602	6.11776e-4	1.15746e-7	0.00818575	6.3314e-6
chr22	38481281	38481352	18367031	0	+	0.535211	(0.53,0.59]	chr22	1562553	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDELR3	ENSG00000100196.11	ENST00000409006.3:ENST00000216014.9:ENST00000471268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.00393	4.8966	5.78927	0.0108084	2.83401e-6	0.064368	9.62519e-5
chr15	58646129	58646204	15311174	0	-	0.373333	(0.36,0.39]	chr15	1208331	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.58747	4.896515	5.20556	6.55819e-4	4.46552e-5	0.00860229	9.34801e-4
chr3	96350147	96350246	3612089	0	+	0.40404	(0.39,0.42]	chr3	310547	7	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	4.78878	4.896345	5.00391	4.27222e-4	9.12714e-5	0.00577513	0.00182992
chr12	123077580	123077679	13593069	0	-	0.59596	(0.59,1]	chr12	1070738	16	INTRON	INTRON	PITPNM2	ENSG00000090975.14	ENST00000320201.10:ENST00000280562.9:ENST00000546049.5:ENST00000451868.2:ENST00000542210.1:ENST00000535289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	3.84557	4.89626	5.94695	0.0410704	1.71208e-5	0.163285	4.31898e-4
chr21	40846661	40846760	18266179	0	-	0.878788	(0.59,1]	chr21	1548542	1	UTR5	UTR5:EXON_MRNA	DSCAM	ENSG00000171587.15	ENST00000400454.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	3.84557	4.89626	5.94695	0.0410704	1.71208e-5	0.163285	4.31898e-4
chr1	75763337	75763432	298855	0	+	0.294737	(0.29,0.33]	chr1	31236	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000680662.1:ENST00000679704.1:ENST00000680166.1:ENST00000681730.1:ENST00000532207.6:ENST00000528016.1:ENST00000481374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	4.12345	4.89532	5.66719	1.7577e-6	1.26128e-6	6.42329e-5	5.37756e-5
chr5	151266730	151266825	6297976	0	+	0.484211	(0.455,0.49]	chr5	491676	1	CDS	CDS:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000523466.5:ENST00000357164.4:ENST00000523004.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.28007	4.895250000000001	5.51043	9.08728e-6	8.3464e-6	2.58924e-4	2.53877e-4
chr7	155309247	155309345	8632666	0	+	0.326531	(0.29,0.33]	chr7	659289	10	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.86293	4.894725	5.92652	5.2702e-6	1.15466e-7	1.61486e-4	7.11016e-6
chr3	156544293	156544366	4538677	0	-	0.424658	(0.42,0.455]	chr3	376083	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	170	2	4.45818	4.894399999999999	5.33062	1.41327e-9	7.27223e-11	1.53907e-7	1.02677e-8
chr16	58707508	58707602	15967618	0	-	0.382979	(0.36,0.39]	chr16	1281403	5	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	4.08155	4.89382	5.70609	9.85897e-7	8.51693e-7	3.94225e-5	3.87319e-5
chr1	203700205	203700268	669460	0	+	0.47619	(0.455,0.49]	chr1	67410	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.63978	4.89376	5.14774	6.94032e-4	7.45457e-5	0.00876781	0.00142165
chr22	26887234	26887316	18454496	0	-	0.487805	(0.455,0.49]	chr22	1574446	5	EXON_PSEUDO	EXON_PSEUDO	RP1-40G4P.1	ENSG00000231369.1	ENST00000422915.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.63978	4.89376	5.14774	6.94032e-4	7.45457e-5	0.00876781	0.00142165
chr19	18442960	18443059	17499361	0	-	0.383838	(0.36,0.39]	chr19	1468125	4	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.42503	4.89347	5.36191	0.00133228	1.79406e-5	0.0144372	4.45904e-4
chr2	32222694	32222793	1711954	0	+	0.363636	(0.36,0.39]	chr2	167927	21	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.42503	4.89347	5.36191	0.00133228	1.79406e-5	0.0144372	4.45904e-4
chr2	135924442	135924498	2898495	0	-	0.535714	(0.53,0.59]	chr2	258627	2	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000441323.5:ENST00000456565.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.69065	4.89339	6.09613	3.04331e-4	3.47717e-7	0.00472028	1.62117e-5
chr1	161592128	161592185	501292	0	+	0.561404	(0.53,0.59]	chr1	54314	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000473530.6:ENST00000611236.1:ENST00000467903.5	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	0	31	2	4.66936	4.893215	5.11707	0.00103174	1.35965e-4	0.0121443	0.00231202
chr17	44075679	44075709	16234047	0	+	0.533333	(0.53,0.59]	chr17	1314331	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.66936	4.893215	5.11707	0.00103174	1.35965e-4	0.0121443	0.00231202
chr19	1495468	1495537	17193645	0	+	0.550725	(0.53,0.59]	chr19	1412285	1	CDS	CDS:EXON_MRNA	REEP6	ENSG00000115255.12	ENST00000591735.2:ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.66936	4.893215	5.11707	0.00103174	1.35965e-4	0.0121443	0.00231202
chr5	130990250	130990339	6219898	0	+	0.550562	(0.53,0.59]	chr5	484005	5	EXON_PSEUDO	EXON_PSEUDO	RP11-114H7.1	ENSG00000244192.1	ENST00000498453.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.66936	4.893215	5.11707	0.00103174	1.35965e-4	0.0121443	0.00231202
chr9	122148111	122148194	10840153	0	-	0.566265	(0.53,0.59]	chr9	821159	1	CDS	CDS:EXON_MRNA	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.66936	4.893215	5.11707	0.00103174	1.35965e-4	0.0121443	0.00231202
chrX	154435791	154435891	18917918	0	+	0.5	(0.49,0.53]	chrX	1611928	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	215	2	3.86521	4.892845	5.92048	9.22445e-8	1e-12	5.83153e-6	2.25522e-10
chrX	153720921	153720972	19273823	0	-	0.490196	(0.49,0.53]	chrX	1637385	2	CDS	CDS:EXON_MRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1:ENST00000645802.1:ENST00000468947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.68246	4.89267	6.10288	3.06313e-4	1.33258e-7	0.00442973	8.01671e-6
chr15	80490228	80490328	15046662	0	+	0.55	(0.53,0.59]	chr15	1183808	16	INTRON	INTRON	ARNT2	ENSG00000172379.21	ENST00000303329.9:ENST00000622346.4:ENST00000533983.5:ENST00000527771.5:ENST00000525103.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.30943	4.89264	6.47585	0.0018255	1.951e-8	0.0183913	1.37715e-6
chr14	28818999	28819099	14552608	0	-	0.3	(0.29,0.33]	chr14	1140693	184	INTRON	INTRON	LINC02281	ENSG00000257748.2	ENST00000549013.1:ENST00000653605.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	3.13212	4.89252	6.65292	0.00551048	4.87193e-10	0.0414592	5.55831e-8
chr9	33442142	33442211	10632549	0	-	0.652174	(0.59,1]	chr9	803590	1	CDS	CDS:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2:ENST00000645858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.44671	4.892355	5.338	0.00931497	3.196e-4	0.0586162	0.00457916
chr3	155931822	155931880	3824598	0	+	0.431034	(0.42,0.455]	chr3	326219	2	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.8515	4.89234	5.93318	0.0119089	5.79703e-7	0.0686664	2.50873e-5
chrX	120439153	120439253	19196151	0	-	0.36	(0.33,0.36]	chrX	1631972	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	137	2	4.07216	4.89177	5.71138	1.48724e-6	1e-12	6.14163e-5	2.25522e-10
chr17	28574695	28574775	16485931	0	-	0.575	(0.53,0.59]	chr17	1347754	1	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	131	2	4.20024	4.891575	5.58291	4.7401e-7	3.37691e-10	2.35621e-5	4.00593e-8
chr22	41518480	41518572	18380973	0	+	0.434783	(0.42,0.455]	chr22	1564587	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	4.22524	4.89113	5.55702	1.2079e-5	7.30994e-6	3.52389e-4	2.13219e-4
chr21	33504223	33504315	18220327	0	-	0.423913	(0.42,0.455]	chr21	1546320	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.71365	4.89109	6.06853	2.63375e-4	2.14495e-7	0.00427022	1.07721e-5
chr1	150968917	150968990	1291409	0	-	0.506849	(0.49,0.53]	chr1	128704	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000368949.8:ENST00000361419.9:ENST00000558062.5:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	115	2	4.79798	4.89095	4.98392	4.13969e-8	2.38624e-9	2.89671e-6	2.24337e-7
chr19	15829159	15829248	17246524	0	+	0.550562	(0.53,0.59]	chr19	1422743	8	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1	lncRNA	lncRNA	lncRNA	lncRNA	3	94	2	4.08751	4.89081	5.69411	5.01544e-6	1.04565e-7	1.7067e-4	5.7906e-6
chr17	44350227	44350283	16234902	0	+	0.571429	(0.53,0.59]	chr17	1314561	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000587518.5:ENST00000588143.5:ENST00000593167.5:ENST00000053867.8:ENST00000588237.5:ENST00000587387.5:ENST00000592783.5:ENST00000591740.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.99191	4.8905899999999995	5.78927	5.86351e-5	2.83401e-6	0.00129243	9.62519e-5
chr9	7477829	7477927	10545928	0	-	0.459184	(0.455,0.49]	chr9	799719	9	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	49	2	4.37693	4.890314999999999	5.4037	1.20695e-5	4.5365e-6	3.52389e-4	1.42727e-4
chr3	48926237	48926333	3458382	0	+	0.53125	(0.53,0.59]	chr3	301759	9	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	63	2	4.82227	4.89026	4.95825	2.87508e-4	2.15841e-7	0.00457439	1.08163e-5
chrX	73223384	73223471	18738612	0	+	0.482759	(0.455,0.49]	chrX	1599228	4	EXON_PSEUDO	EXON_PSEUDO	TOMM20P4	ENSG00000230311.2	ENST00000427861.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	47	2	4.03349	4.890025	5.74656	4.13044e-5	1.95355e-6	9.71332e-4	7.00948e-5
chr1	183627332	183627431	1404931	0	-	0.282828	[0,0.29]	chr1	142115	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.63488	4.8896049999999995	6.14433	7.12896e-4	3.90698e-8	0.00897774	2.49328e-6
chr1	171670516	171670600	1368491	0	-	0.488095	(0.455,0.49]	chr1	139449	1	EXON_PSEUDO	EXON_PSEUDO	PFN1P1	ENSG00000233328.3	ENST00000442087.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	50	2	3.65079	4.88902	6.12725	3.61776e-4	1.23635e-7	0.00544764	6.7072e-6
chr17	78118970	78119046	16693104	0	-	0.605263	(0.59,1]	chr17	1375217	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000590934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	89	2	3.11647	4.88832	6.66017	0.00535979	2.62838e-7	0.0406564	1.27591e-5
chr22	41526261	41526357	18381064	0	+	0.53125	(0.53,0.59]	chr22	1564620	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.98115	4.888215	5.79528	6.28226e-5	2.61912e-6	0.00124286	9.89086e-5
chr5	14652535	14652634	6462536	0	-	0.515152	(0.49,0.53]	chr5	502940	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	298	2	4.3803	4.887855	5.39541	1.6303e-11	1e-12	2.6982e-9	2.46312e-10
chr1	161540180	161540280	500759	0	+	0.53	(0.49,0.53]	chr1	54270	134	INTRON	INTRON	RP11-25K21.6	ENSG00000273112.1	ENST00000537821.2	lncRNA	lncRNA	lncRNA	lncRNA	98	2912	2	4.66985	4.887835	5.10582	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	120222212	120222307	2859290	0	-	0.473684	(0.455,0.49]	chr2	255245	3	CDS	CDS:EXON_MRNA	TMEM185B	ENSG00000226479.4	ENST00000426077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.20189	4.887535	5.57318	0.00397662	6.11867e-6	0.0322851	1.83393e-4
chr6	166938951	166939008	8083326	0	-	0.614035	(0.59,1]	chr6	616960	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000509073.1:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.2353	4.8874949999999995	5.53969	0.0165254	1.29608e-4	0.0873033	0.00223885
chr1	180885052	180885150	586616	0	+	0.44898	(0.42,0.455]	chr1	60742	11	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.75728	4.88645	5.01562	5.3817e-4	1.01971e-4	0.00686676	0.0019861
chr1	44886911	44887011	972467	0	-	0.46	(0.455,0.49]	chr1	102674	48	INTRON	INTRON	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	4.63978	4.8863	5.13282	6.94032e-4	1.20095e-8	0.00876781	9.06312e-7
chr10	133369903	133369967	11754806	0	-	0.578125	(0.53,0.59]	chr10	897316	1	CDS	CDS:EXON_MRNA	ECHS1	ENSG00000127884.5	ENST00000368547.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.43279	4.8861349999999995	5.33948	0.0026472	4.08763e-5	0.0231864	9.64741e-4
chr2	111429408	111429508	2842696	0	-	0.57	(0.53,0.59]	chr2	253594	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR4435-2HG:RP11-803D5.5	ENSG00000172965.17:ENSG00000285016.1	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000603827.1:ENST00000673894.1:ENST00000442293.5:ENST00000644013.1:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.43279	4.8861349999999995	5.33948	0.0026472	4.08763e-5	0.0231864	9.64741e-4
chrX	23900100	23900200	19005844	0	-	0.37	(0.36,0.39]	chrX	1617223	162	INTRON	INTRON	APOO	ENSG00000184831.14	ENST00000379226.9:ENST00000490078.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.58637	4.886125	6.18588	5.84377e-4	5.43608e-8	0.00793559	3.31855e-6
chr6	153282554	153282643	8031078	0	-	0.52809	(0.49,0.53]	chr6	614220	4	EXON_PSEUDO	EXON_PSEUDO	RP11-475C16.1	ENSG00000218426.5	ENST00000492974.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	210	2	4.77759	4.88594	4.99429	2.52913e-9	1.45106e-12	2.56814e-7	3.13273e-10
chr12	8359345	8359443	13194983	0	-	0.387755	(0.36,0.39]	chr12	1033693	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC00937:RPS3AP43	ENSG00000226091.7:ENSG00000242661.1	ENST00000544461.1:ENST00000420040.2:ENST00000539348.5:ENST00000537659.5:ENST00000479743.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	54	2	3.18642	4.8859200000000005	6.58542	0.00359152	1.78594e-9	0.0302391	1.7523e-7
chr1	65616079	65616151	253471	0	+	0.444444	(0.42,0.455]	chr1	28865	2	CDS	CDS:EXON_MRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	4.56888	4.8857800000000005	5.20268	3.59669e-5	1.1745e-6	8.71318e-4	4.57782e-5
chr19	3605734	3605832	17427988	0	-	0.438776	(0.42,0.455]	chr19	1454174	47	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.09661	4.885735	5.67486	2.79795e-5	3.42598e-6	7.07527e-4	1.12506e-4
chr14	69380537	69380637	14687501	0	-	0.49	(0.455,0.49]	chr14	1150257	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	3.3841	4.88533	6.38656	1.17485e-4	7.86964e-9	0.00206023	6.92982e-7
chr2	39474616	39474706	1750568	0	+	0.433333	(0.42,0.455]	chr2	170287	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAP4K3-DT	ENSG00000231312.7	ENST00000659562.1:ENST00000426083.5:ENST00000667600.1:ENST00000443038.1:ENST00000451547.2:ENST00000671403.1:ENST00000658319.1:ENST00000658048.1:ENST00000445520.6:ENST00000422128.6:ENST00000670934.1:ENST00000449569.6:ENST00000425775.2:ENST00000662313.1:ENST00000658057.1:ENST00000668952.1:ENST00000446698.5	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	3.88515	4.885115	5.88508	4.4354e-6	8.1674e-7	1.54303e-4	3.36299e-5
chr12	55726120	55726190	13347076	0	-	0.471429	(0.455,0.49]	chr12	1050336	1	CDS	CDS:UTR3:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000548117.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	216	2	4.51633	4.885005	5.25368	2.48463e-8	1e-12	1.84688e-6	2.25522e-10
chr15	42237523	42237615	15239111	0	-	0.445652	(0.42,0.455]	chr15	1200229	2	CDS	CDS:UTR3:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.77666	4.8849	5.99314	1.85215e-4	1.65844e-7	0.00296795	9.74137e-6
chr3	14485105	14485204	3320833	0	+	0.353535	(0.33,0.36]	chr3	292287	2	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	224	2	4.1789	4.88479	5.59068	4.5191e-9	1e-12	3.90545e-7	2.46312e-10
chr16	571060	571160	15483053	0	+	0.57	(0.53,0.59]	chr16	1224706	3	SS5_PROX	SS5_PROX:INTRON	PIGQ:LA16c-407A10.3	ENSG00000007541.17:ENSG00000282907.1	ENST00000293874.2:ENST00000409527.6:ENST00000409439.6:ENST00000635107.1:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	33	2	4.30195	4.884785	5.46762	0.00421989	1.97761e-5	0.0328662	5.29643e-4
chr2	73240436	73240489	1885369	0	+	0.377358	(0.36,0.39]	chr2	178533	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCT7	ENSG00000135624.16	ENST00000471927.5:ENST00000469844.5:ENST00000473197.5:ENST00000492253.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5:ENST00000258091.10:ENST00000398422.2:ENST00000399032.2:ENST00000409924.7:ENST00000480489.5:ENST00000473786.5:ENST00000482064.1:ENST00000626868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.58476	4.884180000000001	6.1836	5.01956e-4	1.75695e-8	0.00653592	1.37497e-6
chr1	242110814	242110913	1580101	0	-	0.313131	(0.29,0.33]	chr1	157715	26	INTRON	INTRON	PLD5	ENSG00000180287.17	ENST00000536534.7:ENST00000442594.6:ENST00000427495.5:ENST00000314833.10:ENST00000366545.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.63974	4.883785	5.12783	4.81181e-4	5.31593e-5	0.00677016	0.00108035
chr18	45937233	45937331	17102524	0	-	0.316327	(0.29,0.33]	chr18	1404199	19	INTRON	INTRON	EPG5	ENSG00000152223.15	ENST00000282041.11:ENST00000587974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.63974	4.883785	5.12783	4.81181e-4	5.31593e-5	0.00677016	0.00108035
chr1	65572387	65572449	253022	0	+	0.258065	[0,0.29]	chr1	28809	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	4.03506	4.8836949999999995	5.73233	4.20009e-5	5.55063e-7	8.92247e-4	2.69622e-5
chr8	127738751	127738840	9612655	0	+	0.696629	(0.59,1]	chr8	728490	2	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	3.59089	4.8835049999999995	6.17612	7.45913e-5	4.87365e-6	0.00156884	1.51951e-4
chr15	58611899	58611991	15310826	0	-	0.467391	(0.455,0.49]	chr15	1208291	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1:ENST00000481164.1:ENST00000475898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.0204	4.8834800000000005	5.74656	0.00736097	1.95355e-6	0.0490627	7.00948e-5
chr9	104140462	104140558	10395387	0	+	0.395833	(0.39,0.42]	chr9	783184	13	UTR3	UTR3:EXON_MRNA	SMC2	ENSG00000136824.19	ENST00000286398.11:ENST00000374793.8	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.3053	4.883075	5.46085	7.30538e-6	5.81708e-6	2.13219e-4	1.921e-4
chr11	3481664	3481764	11770259	0	+	0.53	(0.49,0.53]	chr11	900554	119	INTRON	INTRON	RP13-726E6.1	ENSG00000254757.1	ENST00000534291.1	lncRNA	lncRNA	lncRNA	lncRNA	4	151	2	4.77985	4.882985	4.98612	2.21147e-7	1.64083e-11	1.24171e-5	2.71435e-9
chr19	12560126	12560219	17236702	0	+	0.526882	(0.49,0.53]	chr19	1420584	7	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	31	2	4.23759	4.88298	5.52837	0.00436474	7.50805e-6	0.0335517	2.3779e-4
chr7	26212407	26212507	8183122	0	+	0.33	(0.29,0.33]	chr7	624437	3	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	110	2	4.40614	4.88259	5.35904	1.13633e-9	4.26186e-10	1.27882e-7	4.92835e-8
chr19	14401706	14401760	17242450	0	+	0.62963	(0.59,1]	chr19	1421828	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.82325	4.882275	4.9413	0.002381	0.00191468	0.0216895	0.0190905
chr11	126264958	126265029	12645157	0	-	0.492958	(0.49,0.53]	chr11	981836	1	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000531104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	3.94177	4.88197	5.82217	0.0104929	1.36598e-6	0.063428	5.18684e-5
chr6	30690046	30690144	7658961	0	-	0.581633	(0.53,0.59]	chr6	584190	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	4.36133	4.881895	5.40246	5.91026e-6	1.6811e-9	1.77972e-4	1.79426e-7
chr12	4097942	4098041	12704110	0	+	0.383838	(0.36,0.39]	chr12	985492	6	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.73346	4.88183	5.0302	3.2963e-4	1.15931e-4	0.00504024	0.00204552
chr20	34089539	34089634	17945935	0	-	0.442105	(0.42,0.455]	chr20	1519882	14	UTR3	UTR3:EXON_MRNA	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	4.6483	4.881705	5.11511	1.06424e-8	9.06218e-9	9.02974e-7	7.13525e-7
chr22	31956602	31956692	18351652	0	+	0.511111	(0.49,0.53]	chr22	1560134	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000479649.1:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	4.67972	4.88155	5.08338	6.94757e-4	2.00613e-8	0.00876781	1.40889e-6
chr1	20942143	20942236	884947	0	-	0.451613	(0.42,0.455]	chr1	91576	8	CDS	CDS:UTR3:EXON_MRNA:INTRON	EIF4G3	ENSG00000075151.23	ENST00000374935.7:ENST00000264211.12:ENST00000602326.5:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000356916.7:ENST00000682284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.39468	4.881460000000001	5.36824	0.00240483	1.33083e-5	0.0217482	3.81624e-4
chrX	120431322	120431422	19196071	0	-	0.45	(0.42,0.455]	chrX	1631966	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.40276	4.881365	5.35997	0.0017618	2.41298e-5	0.0180053	5.6648e-4
chr13	25097694	25097794	13647300	0	+	0.49	(0.455,0.49]	chr13	1075795	15	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.81275	4.881085	5.94942	0.0138827	4.68666e-7	0.0760883	2.08717e-5
chr1	150755000	150755075	1290310	0	-	0.413333	(0.39,0.42]	chr1	128455	1	CDS	CDS:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1:ENST00000679582.1:ENST00000480760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.55723	4.880789999999999	5.20435	0.00117753	2.91423e-5	0.0127276	7.26551e-4
chr12	111448985	111449083	13092087	0	+	0.540816	(0.53,0.59]	chr12	1021116	8	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.44509	4.8803	6.31551	8.31409e-5	6.83735e-8	0.00171126	4.03413e-6
chr1	211173668	211173758	698771	0	+	0.522222	(0.49,0.53]	chr1	70737	3	EXON_PSEUDO	EXON_PSEUDO	RP11-543B16.1	ENSG00000234004.4	ENST00000427600.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	167	2	3.43848	4.8800550000000005	6.32163	3.12402e-6	1e-12	1.15696e-4	2.25522e-10
chr22	39490719	39490817	18370548	0	+	0.428571	(0.42,0.455]	chr22	1563180	19	UTR3	UTR3:EXON_MRNA	MGAT3	ENSG00000128268.12	ENST00000341184.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.54792	4.879895	5.21187	9.66045e-4	5.5797e-5	0.0115185	0.00112719
chr4	154542186	154542279	5744297	0	-	0.451613	(0.42,0.455]	chr4	453853	1	CDS	CDS:UTR3:EXON_MRNA	PLRG1	ENSG00000171566.12	ENST00000499023.7:ENST00000302078.9:ENST00000506192.5:ENST00000506918.1:ENST00000504341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.54792	4.879895	5.21187	9.66045e-4	5.5797e-5	0.0115185	0.00112719
chr7	103542730	103542804	8963689	0	-	0.432432	(0.42,0.455]	chr7	686171	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.54792	4.879895	5.21187	9.66045e-4	5.5797e-5	0.0115185	0.00112719
chr5	70447233	70447330	6023563	0	+	0.391753	(0.39,0.42]	chr5	471965	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	GTF2H2B	ENSG00000226259.10	ENST00000508065.7:ENST00000513202.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	26	2	4.77106	4.879655	4.98825	3.03764e-4	1.62756e-4	0.00472028	0.00266622
chr7	40095180	40095280	8244517	0	+	0.33	(0.29,0.33]	chr7	628307	3	UTR3	UTR3:EXON_MRNA	CDK13	ENSG00000065883.16	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000644221.1:ENST00000644561.1:ENST00000645826.1:ENST00000465643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.45534	4.87944	5.30354	0.00110984	1.89876e-5	0.0127344	4.64808e-4
chr1	161173858	161173953	1332785	0	-	0.526316	(0.49,0.53]	chr1	136732	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	B4GALT3	ENSG00000158850.15	ENST00000319769.10:ENST00000622395.4:ENST00000470882.5:ENST00000367998.5:ENST00000466504.5:ENST00000465740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.55929	4.87906	5.19883	0.00116196	6.30063e-5	0.0130851	0.00124286
chr7	157170303	157170376	8635748	0	+	0.493151	(0.49,0.53]	chr7	659652	1	CDS	CDS:UTR3:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4:ENST00000430750.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.55929	4.87906	5.19883	0.00116196	6.30063e-5	0.0130851	0.00124286
chr14	54441327	54441391	14635641	0	-	0.765625	(0.59,1]	chr14	1146430	1	UTR5	UTR5:EXON_MRNA	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	4.34429	4.878769999999999	5.41325	3.01546e-4	1.84713e-5	0.00472028	4.5469e-4
chr1	6233558	6233643	842671	0	-	0.435294	(0.42,0.455]	chr1	84951	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5:ENST00000474756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.80064	4.87862	4.9566	3.0479e-4	2.10615e-4	0.00472028	0.00327655
chr1	28499972	28500070	117071	0	+	0.438776	(0.42,0.455]	chr1	14288	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHACTR4	ENSG00000204138.13	ENST00000373839.8:ENST00000632964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.80064	4.87862	4.9566	3.0479e-4	2.10615e-4	0.00472028	0.00327655
chr12	16363809	16363875	12753014	0	+	0.454545	(0.42,0.455]	chr12	991384	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MGST1	ENSG00000008394.13	ENST00000010404.6:ENST00000396210.8:ENST00000543076.5:ENST00000539036.5:ENST00000542256.5:ENST00000539708.5:ENST00000535309.5:ENST00000396209.5:ENST00000540056.5:ENST00000540126.5:ENST00000396207.1:ENST00000538857.1:ENST00000535624.1:ENST00000624056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:TEC:processed_transcript	0	27	2	4.80064	4.87862	4.9566	3.0479e-4	2.10615e-4	0.00472028	0.00327655
chr2	86775578	86775676	1928611	0	+	0.438776	(0.42,0.455]	chr2	181779	23	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.80064	4.87862	4.9566	3.0479e-4	2.10615e-4	0.00472028	0.00327655
chr17	5433292	5433353	16421511	0	-	0.442623	(0.42,0.455]	chr17	1338177	1	CDS	CDS:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573204.1:ENST00000573421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	4.67981	4.878584999999999	5.07736	5.38444e-4	2.03293e-8	0.00744072	1.42506e-6
chr11	27890434	27890533	12317023	0	-	0.474747	(0.455,0.49]	chr11	952778	17	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	63	2	2.9967	4.878495	6.76029	0.00650423	5.89697e-10	0.0454205	6.54492e-8
chr17	78505192	78505292	16694578	0	-	0.65	(0.59,1]	chr17	1375684	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAH17	ENSG00000187775.17	ENST00000389840.7:ENST00000587177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	3.84557	4.878295	5.91102	0.0410704	2.06903e-5	0.163285	4.99825e-4
chr12	54462108	54462172	13344060	0	-	0.515625	(0.49,0.53]	chr12	1049890	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	95	2	3.88627	4.877925	5.86958	7.54524e-7	8.23116e-8	3.49213e-5	4.7302e-6
chr17	7014144	7014186	16103375	0	+	0.47619	(0.455,0.49]	chr17	1296032	1	CDS	CDS:UTR3:EXON_MRNA	RNASEK:RNASEK-C17orf49	ENSG00000219200.12:ENSG00000161939.19	ENST00000548577.5:ENST00000546395.5:ENST00000570898.1:ENST00000593646.6:ENST00000552039.2:ENST00000549775.5:ENST00000552176.2:ENST00000552842.1:ENST00000549393.2:ENST00000547863.5:ENST00000552321.2:ENST00000607564.1:ENST00000547302.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	4.27906	4.877525	5.47599	8.82347e-6	7.64978e-6	2.48294e-4	2.4151e-4
chr16	89935606	89935704	15812578	0	+	0.622449	(0.59,1]	chr16	1259312	10	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-566K11.2:TUBB3	ENSG00000198211.8:ENSG00000258947.8	ENST00000556922.1:ENST00000554444.5:ENST00000315491.12:ENST00000555576.5:ENST00000555609.5:ENST00000680788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	92	2	2.9891200000000002	4.87682	6.76452	0.00823979	1.3389e-7	0.0540283	7.1964e-6
chr3	197954074	197954147	3992989	0	+	0.493151	(0.49,0.53]	chr3	336618	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	578	2	4.61835	4.8767949999999995	5.13524	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	82237609	82237704	16382690	0	+	0.663158	(0.59,1]	chr17	1332454	6	CDS	CDS:EXON_MRNA:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000578684.6:ENST00000577650.6:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.7151	4.87672	5.03834	0.00412279	0.00108238	0.0325842	0.0118355
chr5	140175187	140175285	6252552	0	+	0.612245	(0.59,1]	chr5	487330	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6:ENST00000644078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.7151	4.87672	5.03834	0.00412279	0.00108238	0.0325842	0.0118355
chr19	14397888	14397935	17242407	0	+	0.617021	(0.59,1]	chr19	1421816	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000586517.5:ENST00000357355.7:ENST00000242786.6:ENST00000591737.1:ENST00000593028.1:ENST00000586849.5:ENST00000592341.1:ENST00000587319.5:ENST00000590567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.74378	4.876615	5.00945	0.00312942	0.00149725	0.0264364	0.0159607
chr13	25097495	25097594	13647298	0	+	0.50505	(0.49,0.53]	chr13	1075795	13	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	4	150	2	4.77985	4.876545	4.97324	2.21147e-7	1.87592e-11	1.24171e-5	3.05117e-9
chr16	33980791	33980843	15640344	0	+	0.576923	(0.53,0.59]	chr16	1242731	2	EXON_PSEUDO	EXON_PSEUDO	RP11-598D12.4	ENSG00000198555.7	ENST00000568600.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	39	2	3.82407	4.876455	5.92884	0.0179666	1.11987e-6	0.0918323	4.4003e-5
chr8	125021845	125021945	9595593	0	+	0.36	(0.33,0.36]	chr8	727948	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.78095	4.876329999999999	6.97171	0.00388614	3.02687e-11	0.0322851	4.67265e-9
chr18	49490894	49490927	17119618	0	-	0.515152	(0.49,0.53]	chr18	1405591	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000584364.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000581091.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000582935.1:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	123	2	4.62576	4.87589	5.12602	7.32131e-7	1.00955e-10	3.41344e-5	1.36994e-8
chr19	7627789	7627851	17447082	0	-	0.564516	(0.53,0.59]	chr19	1457906	2	CDS	CDS:EXON_MRNA	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.55274	4.8757850000000005	5.19883	0.00167999	8.7034e-5	0.0164993	0.00177086
chr5	151267351	151267451	6297984	0	+	0.56	(0.53,0.59]	chr5	491681	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000357164.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.5586	4.87574	5.19288	0.00161229	9.22873e-5	0.0169168	0.0016906
chr3	13376360	13376431	4046823	0	-	0.492958	(0.49,0.53]	chr3	339678	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	75	2	4.50393	4.87486	5.24579	4.073e-5	3.34456e-8	9.64741e-4	2.18513e-6
chr14	54436368	54436437	14635589	0	-	0.376812	(0.36,0.39]	chr14	1146418	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	4.04356	4.8748249999999995	5.70609	1.32387e-6	8.51693e-7	5.07778e-5	3.87319e-5
chr6	7882281	7882377	7587978	0	-	0.385417	(0.36,0.39]	chr6	578854	9	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	4.6501	4.874750000000001	5.0994	4.68763e-5	5.80078e-7	0.00107286	2.50873e-5
chr14	52640605	52640704	14630036	0	-	0.40404	(0.39,0.42]	chr14	1145962	8	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	4.83358	4.874575	4.91557	1.20779e-7	7.36997e-8	7.40241e-6	4.29759e-6
chr19	47064284	47064383	17595794	0	-	0.343434	(0.33,0.36]	chr19	1481489	2	UTR3	UTR3:EXON_MRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000601973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.33896	4.874255	5.40955	0.00182033	1.14206e-5	0.0183913	3.08108e-4
chr20	34073818	34073866	17762595	0	+	0.458333	(0.455,0.49]	chr20	1500123	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.77318	4.8742149999999995	4.97525	4.7888e-4	1.38474e-4	0.00628636	0.00254294
chr16	84975652	84975750	16063271	0	-	0.489796	(0.455,0.49]	chr16	1290318	16	UTR3	UTR3:EXON_MRNA	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.87186	4.8740950000000005	4.87633	2.95855e-4	2.33781e-4	0.00432147	0.00385436
chr11	119051884	119051951	12626506	0	-	0.597015	(0.59,1]	chr11	979799	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	146	2	4.80662	4.87396	4.9413	0.00191468	2.77927e-8	0.0190905	1.87297e-6
chr12	46201097	46201147	13313568	0	-	0.36	(0.33,0.36]	chr12	1043492	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	4.17122	4.873865	5.57651	1.72402e-5	1.91451e-6	4.33531e-4	7.60536e-5
chr4	145375719	145375808	5146230	0	+	0.516854	(0.49,0.53]	chr4	416391	3	EXON_PSEUDO	EXON_PSEUDO	RTN3P1	ENSG00000251333.3	ENST00000536295.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	49	2	4.20376	4.87383	5.5439	1.43152e-5	8.44877e-6	4.04062e-4	2.39255e-4
chr5	80651552	80651649	6667611	0	-	0.42268	(0.42,0.455]	chr5	514741	16	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	227	6041	2	4.47513	4.873435000000001	5.27174	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	159918601	159918700	1326673	0	-	0.575758	(0.53,0.59]	chr1	135579	6	UTR3	UTR3:EXON_MRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9	protein_coding	protein_coding	protein_coding	protein_coding	13	475	2	4.45883	4.8733900000000006	5.28795	1.20725e-11	1e-12	2.25951e-9	2.25522e-10
chrX	66256179	66256254	18718198	0	+	0.346667	(0.33,0.36]	chrX	1597054	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	4.54796	4.87336	5.19876	2.37278e-5	1.2206e-6	6.1689e-4	4.73214e-5
chr5	75350041	75350094	6037043	0	+	0.490566	(0.49,0.53]	chr5	473613	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	3.52743	4.87274	6.21805	7.08867e-6	7.46967e-8	2.27895e-4	4.33833e-6
chr8	11847051	11847109	9699230	0	-	0.551724	(0.53,0.59]	chr8	734816	1	CDS	CDS:UTR3:EXON_MRNA	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	233	2	4.04528	4.87274	5.7002	4.28524e-5	1e-12	9.98851e-4	2.25522e-10
chr1	112890766	112890844	1232292	0	-	0.371795	(0.36,0.39]	chr1	120454	1	EXON_PSEUDO	EXON_PSEUDO	RP3-522D1.2	ENSG00000228040.1	ENST00000416137.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.24194	4.872445	5.50295	0.00276729	7.4907e-6	0.0247437	2.17853e-4
chr5	168938098	168938198	6972021	0	-	0.39	(0.36,0.39]	chr5	533031	544	INTRON	INTRON	SLIT3	ENSG00000184347.15	ENST00000519560.6:ENST00000332966.8:ENST00000518140.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.24194	4.872445	5.50295	0.00276729	7.4907e-6	0.0247437	2.17853e-4
chr12	113387743	113387824	13101730	0	+	0.555556	(0.53,0.59]	chr12	1022442	1	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.1234	4.87177	6.62014	0.00390623	6.02789e-9	0.0322851	5.00481e-7
chr19	9820218	9820297	17223479	0	+	0.56962	(0.53,0.59]	chr19	1418083	2	EXON_PSEUDO	EXON_PSEUDO	RPL10P15	ENSG00000267119.1	ENST00000585756.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	4.00393	4.8717500000000005	5.73957	0.0108084	3.90343e-6	0.064368	1.26306e-4
chr9	14922104	14922204	10581566	0	-	0.42	(0.39,0.42]	chr9	800961	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	8	169	2	3.8112	4.871645	5.93209	4.76887e-9	2.11253e-12	4.08187e-7	4.75999e-10
chr3	184173022	184173121	3948134	0	+	0.454545	(0.42,0.455]	chr3	331990	24	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.09155	4.87147	5.65139	2.98142e-5	2.06893e-6	6.7355e-4	8.11386e-5
chr1	15604685	15604774	69364	0	+	0.662921	(0.59,1]	chr1	7744	2	EXON_PSEUDO	EXON_PSEUDO	CHCHD2P6	ENSG00000235084.3	ENST00000454346.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	79	2	3.53648	4.8712800000000005	6.20608	0.00107706	4.1102e-6	0.0124943	1.31763e-4
chr7	50403808	50403907	8279169	0	+	0.383838	(0.36,0.39]	chr7	630737	33	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.96717	4.8711649999999995	5.77516	6.17763e-5	5.05798e-7	0.00122919	2.49522e-5
chr19	38921091	38921191	17561725	0	-	0.47	(0.455,0.49]	chr19	1475320	3	SS5_PROX	SS5_PROX:INTRON	SARS2:CTC-360G5.8	ENSG00000104835.15:ENSG00000269547.1	ENST00000221431.11:ENST00000594171.5:ENST00000430193.7:ENST00000599996.1:ENST00000600042.5:ENST00000455102.6:ENST00000600448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.26593	4.87096	5.47599	0.00372962	7.64978e-6	0.0302984	2.4151e-4
chr7	4770843	4770943	8109667	0	+	0.46	(0.455,0.49]	chr7	619657	85	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	123	2	4.52738	4.870950000000001	5.21452	5.82738e-9	1.19382e-9	4.88601e-7	1.32991e-7
chr1	236550701	236550801	1568178	0	-	0.43	(0.42,0.455]	chr1	156951	18	UTR3	UTR3:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.74859	4.870865	5.99314	1.15347e-5	1.65844e-7	3.09736e-4	9.74137e-6
chr11	119100261	119100332	12626652	0	-	0.507042	(0.49,0.53]	chr11	979865	1	CDS	CDS:UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	122	2	3.89368	4.870865	5.84805	4.1076e-6	1.55019e-11	1.44512e-4	2.58278e-9
chr6	44233416	44233428	7161523	0	+	0.5	(0.49,0.53]	chr6	553814	1	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.84744	4.870744999999999	4.89405	3.70203e-4	2.57983e-4	0.00515475	0.00419998
chr14	77710837	77710896	14415712	0	+	0.440678	(0.42,0.455]	chr14	1126897	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLIRP	ENSG00000119705.10	ENST00000613856.4:ENST00000238688.9:ENST00000557431.5:ENST00000557623.5:ENST00000557342.6:ENST00000555890.5:ENST00000556831.5:ENST00000554074.1:ENST00000556310.1:ENST00000556375.5:ENST00000553981.1:ENST00000556956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	105	2	4.69374	4.87043	5.04712	1.96283e-8	6.00102e-9	1.51544e-6	5.00105e-7
chr7	44581722	44581772	8800254	0	-	0.68	(0.59,1]	chr7	671350	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	4.23031	4.8704149999999995	5.51052	0.00019737500000000001	3.46639e-5	0.00336487	7.61275e-4
chr10	63357769	63357869	11533331	0	-	0.44	(0.42,0.455]	chr10	878586	887	INTRON	INTRON	JMJD1C	ENSG00000171988.19	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	4.69393	4.870365	5.0468	1.33918e-4	3.8764e-7	0.00229039	1.99378e-5
chr11	91116257	91116356	12065681	0	+	0.484848	(0.455,0.49]	chr11	930042	4	EXON_PSEUDO	EXON_PSEUDO	OSBPL9P3	ENSG00000255070.1	ENST00000534523.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	29	2	4.36307	4.869579999999999	5.37609	0.00218641	2.05373e-5	0.0208941	4.97369e-4
chr8	96835041	96835110	9502406	0	+	0.463768	(0.455,0.49]	chr8	722602	2	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.36307	4.869579999999999	5.37609	0.00218641	2.05373e-5	0.0208941	4.97369e-4
chr19	14405843	14405939	17242498	0	+	0.645833	(0.59,1]	chr19	1421849	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	4.40113	4.869565	5.338	3.196e-4	1.5917e-5	0.00457916	4.44589e-4
chr15	72349168	72349259	15369487	0	-	0.494505	(0.49,0.53]	chr15	1214437	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	4.34495	4.86947	5.39399	1.71804e-5	1.28445e-7	4.72485e-4	6.93472e-6
chr12	51059929	51060028	12876170	0	+	0.373737	(0.36,0.39]	chr12	1000594	6	UTR3	UTR3:EXON_MRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000552645.5:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	4	126	2	4.78254	4.8694299999999995	4.95632	1.93842e-7	1.52849e-11	1.10775e-5	2.55138e-9
chr6	7895105	7895202	7588112	0	-	0.587629	(0.53,0.59]	chr6	578889	1	CDS	CDS:UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000439343.2:ENST00000473453.2:ENST00000469459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	4.77222	4.86939	4.96656	6.67251e-4	6.94912e-8	0.00867533	4.08427e-6
chrX	46439708	46439799	19057488	0	-	0.516484	(0.49,0.53]	chrX	1619621	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP65	ENSG00000235587.2	ENST00000425487.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	64	2	3.7246	4.869315	6.01403	1.36405e-5	2.61944e-7	3.54667e-4	1.42854e-5
chrX	156009315	156009415	18924383	0	+	0.46	(0.455,0.49]	chrX	1612722	1	SS3_PROX	SS3_PROX:INTRON	IL9R:AJ271736.10	ENSG00000124334.17:ENSG00000270726.6	ENST00000244174.10:ENST00000369423.7:ENST00000483543.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	28	2	4.41041	4.869	5.32759	0.00218771	1.92345e-5	0.0202707	5.18397e-4
chr14	22588946	22589001	14526154	0	-	0.490909	(0.49,0.53]	chr14	1137876	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.51981	4.86893	6.21805	6.88328e-4	7.46967e-8	0.00876781	4.33833e-6
chr8	6741660	6741751	9180609	0	+	0.417582	(0.39,0.42]	chr8	701041	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	4.20029	4.86871	5.53713	1.46608e-5	3.48373e-6	3.77398e-4	1.26023e-4
chr4	64953629	64953729	5445208	0	-	0.47	(0.455,0.49]	chr4	435707	132	INTRON	INTRON	LINC02232	ENSG00000250125.4	ENST00000509932.2:ENST00000659694.1:ENST00000665259.1:ENST00000670052.1:ENST00000665528.1:ENST00000652257.1:ENST00000657399.1	lncRNA	lncRNA	lncRNA	lncRNA	68	2223	2	3.956	4.8686	5.7812	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	165743238	165743311	1341501	0	-	0.424658	(0.42,0.455]	chr1	137603	2	CDS	CDS:UTR3:EXON_MRNA	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	136	2	4.21933	4.86826	5.51719	2.93588e-9	3.76325e-10	2.91874e-7	4.41173e-8
chr7	127926661	127926761	8517701	0	+	0.49	(0.455,0.49]	chr7	649742	215	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.50805	4.8679950000000005	5.22794	0.00122223	4.80556e-5	0.0135383	9.91058e-4
chr2	191969028	191969128	2284722	0	+	0.3	(0.29,0.33]	chr2	207298	456	INTRON	INTRON	CAVIN2-AS1	ENSG00000233766.7	ENST00000424116.6:ENST00000428980.6	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.41812	4.867935	5.31775	0.00162106	1.06766e-5	0.0161179	3.17854e-4
chr13	25097994	25098094	13647303	0	+	0.45	(0.42,0.455]	chr13	1075796	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.24133	4.867805	5.49428	0.00326918	1.07978e-5	0.0282494	2.9314e-4
chr3	141745376	141745475	3788831	0	+	0.40404	(0.39,0.42]	chr3	323389	2	UTR3	UTR3:EXON_MRNA:INTRON	RNF7:RP11-271K21.13	ENSG00000114125.14:ENSG00000285558.1	ENST00000480908.1:ENST00000393000.3:ENST00000273480.4:ENST00000477012.5:ENST00000477393.1:ENST00000648835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	4.35508	4.8677	5.38032	9.82886e-6	5.2004e-6	2.98194e-4	1.59965e-4
chr9	137184351	137184412	10893351	0	-	0.622951	(0.59,1]	chr9	828454	2	INTRON	INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.37323	4.86763	5.36203	0.00990413	3.74697e-4	0.061536	0.00560631
chr9	125241026	125241126	10856277	0	-	0.69	(0.59,1]	chr9	822396	1	CDS_START	CDS_START:CDS:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	473	2	4.47017	4.867465	5.26476	4.6955e-8	1.26903e-11	3.23258e-6	2.14715e-9
chr22	19057115	19057162	18430241	0	-	0.638298	(0.59,1]	chr22	1570364	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000608548.1:ENST00000473832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.63106	4.86726	5.10346	0.00537945	8.40506e-4	0.0406564	0.00981548
chr7	65980223	65980316	8834581	0	-	0.612903	(0.59,1]	chr7	674610	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1:ENST00000478118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.63106	4.86726	5.10346	0.00537945	8.40506e-4	0.0406564	0.00981548
chr20	45893254	45893311	17803017	0	+	0.526316	(0.49,0.53]	chr20	1505435	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3:ENST00000485627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.79086	4.8672450000000005	4.94363	4.20783e-4	2.3417e-4	0.00611538	0.00355764
chr8	18383365	18383457	9733131	0	-	0.456522	(0.455,0.49]	chr8	736376	2	EXON_PSEUDO	EXON_PSEUDO	RP11-685B14.1	ENSG00000244593.1	ENST00000465163.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	47	2	4.06083	4.86711	5.67339	3.56832e-5	2.05982e-6	7.81595e-4	8.10246e-5
chr8	30238948	30239036	9253429	0	+	0.488636	(0.455,0.49]	chr8	708957	3	EXON_PSEUDO	EXON_PSEUDO	HSPA8P11	ENSG00000248159.1	ENST00000508840.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.6621	4.86691	5.07172	7.84472e-4	8.3067e-5	0.00927662	0.00171126
chr9	100006576	100006647	10772774	0	-	0.352113	(0.33,0.36]	chr9	815433	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	4	108	2	4.71342	4.86665	5.01988	2.63051e-8	1.76668e-10	1.95115e-6	2.24704e-8
chr8	37744354	37744416	9289927	0	+	0.483871	(0.455,0.49]	chr8	710337	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000523887.5:ENST00000519638.3:ENST00000648919.1:ENST00000521993.3:ENST00000518586.5:ENST00000335171.10:ENST00000521644.5:ENST00000523107.5:ENST00000647813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.76048	4.86653	4.97258	3.99985e-4	1.84876e-4	0.00588767	0.00296795
chr1	154979061	154979156	482021	0	+	0.463158	(0.455,0.49]	chr1	50167	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000477676.6:ENST00000474215.5:ENST00000471245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	3.88572	4.866365	5.84701	5.98588e-7	4.51834e-7	2.85128e-5	2.03245e-5
chr3	136329926	136330026	3763160	0	+	0.47	(0.455,0.49]	chr3	321905	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	4.32883	4.866265	5.4037	1.20695e-5	6.31002e-6	3.52389e-4	1.88287e-4
chr14	77469397	77469472	14415673	0	+	0.32	(0.29,0.33]	chr14	1126885	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AHSA1	ENSG00000100591.8	ENST00000216479.8:ENST00000555457.5:ENST00000555729.3:ENST00000556369.1:ENST00000557476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	4.3096	4.86584	5.42208	6.80571e-6	5.31413e-6	2.01083e-4	1.7831e-4
chr4	83462271	83462369	5500213	0	-	0.295918	(0.29,0.33]	chr4	440770	29	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6:ENST00000506553.5:ENST00000504777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	4.3096	4.86584	5.42208	6.80571e-6	5.31413e-6	2.01083e-4	1.7831e-4
chr1	40092397	40092467	954877	0	-	0.385714	(0.36,0.39]	chr1	100908	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2:ENST00000641548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	4.50306	4.86575	5.22844	1.8245e-6	4.38129e-9	7.35552e-5	3.79596e-7
chr10	92857717	92857816	11192678	0	+	0.353535	(0.33,0.36]	chr10	851157	87	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.76625	4.86556	4.96487	3.84608e-4	9.26851e-5	0.00531017	0.00185187
chr12	104030969	104031064	13057243	0	+	0.578947	(0.53,0.59]	chr12	1017437	3	EXON_PSEUDO	EXON_PSEUDO	RP11-490H24.5	ENSG00000216285.5	ENST00000547454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.86232	4.8652750000000005	4.86823	4.57805e-4	4.35895e-4	0.00623608	0.00608573
chr15	22867427	22867524	14810921	0	+	0.546392	(0.53,0.59]	chr15	1162141	7	UTR3	UTR3:EXON_MRNA	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000398013.7:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.86232	4.8652750000000005	4.86823	4.57805e-4	4.35895e-4	0.00623608	0.00608573
chr17	82601692	82601789	16384589	0	+	0.587629	(0.53,0.59]	chr17	1332764	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000529652.1:ENST00000624186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	0	30	2	4.86232	4.8652750000000005	4.86823	4.57805e-4	4.35895e-4	0.00623608	0.00608573
chr7	103367896	103367954	8441714	0	+	0.551724	(0.53,0.59]	chr7	645122	1	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.86232	4.8652750000000005	4.86823	4.57805e-4	4.35895e-4	0.00623608	0.00608573
chr6	39191372	39191467	7690374	0	-	0.726316	(0.59,1]	chr6	589669	5	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	4.31663	4.86494	5.41325	3.01546e-4	2.15624e-5	0.00472028	5.14797e-4
chr1	10418825	10418925	39904	0	+	0.43	(0.42,0.455]	chr1	4831	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000498356.1:ENST00000496718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	157	2	4.69708	4.86485	5.03262	2.94692e-10	1.56611e-10	3.55262e-8	2.24824e-8
chr22	41810206	41810291	18382968	0	+	0.635294	(0.59,1]	chr22	1564959	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CCDC134	ENSG00000100147.14	ENST00000255784.6:ENST00000402061.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.44671	4.864775	5.28284	0.00931497	4.04404e-4	0.0586162	0.00550292
chr8	80266065	80266155	9910872	0	-	0.655556	(0.59,1]	chr8	748578	7	EXON_PSEUDO	EXON_PSEUDO	RP11-941H19.1	ENSG00000241746.1	ENST00000478813.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	39	2	4.44671	4.864775	5.28284	0.00931497	4.04404e-4	0.0586162	0.00550292
chrX	152767084	152767177	19272359	0	-	0.602151	(0.59,1]	chrX	1637049	4	CDS	CDS:EXON_MRNA	MAGEA6	ENSG00000197172.10	ENST00000329342.9:ENST00000616035.4:ENST00000457643.1:ENST00000412733.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.44671	4.864775	5.28284	0.00931497	4.04404e-4	0.0586162	0.00550292
chrX	49542887	49542971	18694803	0	+	0.511905	(0.49,0.53]	chrX	1594918	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE12D	ENSG00000227488.2	ENST00000405679.3	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	4.5643	4.86468	5.16506	1.79173e-8	9.90322e-9	1.39606e-6	7.695e-7
chr10	74138192	74138279	11575987	0	-	0.436782	(0.42,0.455]	chr10	881710	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1:ENST00000487653.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.4231	4.8646650000000005	6.30623	0.00112541	3.37116e-8	0.0128481	2.19621e-6
chr14	30889615	30889691	14201301	0	+	0.473684	(0.455,0.49]	chr14	1112919	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.83859	4.863894999999999	6.8892	0.00215336	1.77804e-10	0.0208395	2.25984e-8
chr6	149378960	149379053	7480753	0	+	0.494624	(0.49,0.53]	chr6	571632	2	CDS	CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.76099	4.863765	5.96654	2.00194e-4	4.9393e-7	0.0034021	2.18407e-5
chr5	176507242	176507340	6402680	0	+	0.418367	(0.39,0.42]	chr5	497383	4	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.76141	4.86338	5.96535	2.14058e-4	3.80804e-7	0.00359478	1.7481e-5
chr5	96795101	96795162	6721305	0	-	0.442623	(0.42,0.455]	chr5	517463	2	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.67981	4.863305	5.0468	5.38444e-4	1.33918e-4	0.00744072	0.00229039
chrX	36375183	36375282	19038814	0	-	0.454545	(0.42,0.455]	chrX	1618262	1	INTRON	INTRON	RP11-87M18.2	ENSG00000226484.2	ENST00000455438.2	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.67981	4.863305	5.0468	5.38444e-4	1.33918e-4	0.00744072	0.00229039
chr9	137184512	137184612	10893353	0	-	0.68	(0.59,1]	chr9	828455	2	SS5_PROX	SS5_PROX:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	4.18569	4.862690000000001	5.53969	1.29608e-4	5.09234e-5	0.00223885	0.00114531
chr1	22078478	22078578	92937	0	+	0.4	(0.39,0.42]	chr1	10767	1	CDS_START	CDS_START:CDS:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000651171.1:ENST00000652582.1:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	4.01791	4.862415	5.70692	4.78174e-5	2.36087e-6	0.00109049	8.27472e-5
chr14	102010739	102010810	14495441	0	+	0.549296	(0.53,0.59]	chr14	1133092	1	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.76633	4.86229	4.95825	6.98999e-4	2.87508e-4	0.00846751	0.00457439
chr11	62789291	62789358	11974107	0	+	0.552239	(0.53,0.59]	chr11	917980	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TMEM179B:MIR6748	ENSG00000185475.11:ENSG00000284535.1	ENST00000333449.9:ENST00000533861.5:ENST00000532586.1:ENST00000532345.1:ENST00000526546.1:ENST00000610433.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	30	2	4.77222	4.862275	4.95233	6.67251e-4	3.02711e-4	0.00867533	0.00439897
chr12	57232472	57232523	12902128	0	+	0.568627	(0.53,0.59]	chr12	1005201	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000554656.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000554975.5:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000555213.1:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.77222	4.862275	4.95233	6.67251e-4	3.02711e-4	0.00867533	0.00439897
chr17	40457439	40457534	16225266	0	+	0.568421	(0.53,0.59]	chr17	1312278	10	UTR3	UTR3:EXON_MRNA	IGFBP4	ENSG00000141753.7	ENST00000269593.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.77222	4.862275	4.95233	6.67251e-4	3.02711e-4	0.00867533	0.00439897
chr7	75881909	75881991	8341214	0	+	0.548781	(0.53,0.59]	chr7	636068	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RHBDD2	ENSG00000005486.17	ENST00000466232.5:ENST00000468644.5:ENST00000318622.8:ENST00000454791.1:ENST00000006777.11:ENST00000468304.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.77222	4.862275	4.95233	6.67251e-4	3.02711e-4	0.00867533	0.00439897
chr1	19608568	19608666	86936	0	+	0.265306	[0,0.29]	chr1	9725	1	INTRON	INTRON	MICOS10:NBL1:MICOS10-NBL1	ENSG00000173436.15:ENSG00000158747.15:ENSG00000270136.6	ENST00000648702.1:ENST00000617872.4:ENST00000602662.1:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000602293.5:ENST00000602384.5:ENST00000602450.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	77	2	3.91571	4.862155	5.8086	1.5798e-4	9.20908e-12	0.00285004	1.6137e-9
chr4	75647104	75647181	5472890	0	-	0.38961	(0.36,0.39]	chr4	438376	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000677520.1:ENST00000678932.1:ENST00000507133.2:ENST00000677426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.0322	4.86191	5.69162	0.00588589	2.15744e-6	0.0427941	7.62296e-5
chr5	134858566	134858663	6232067	0	+	0.257732	[0,0.29]	chr5	485469	13	UTR3	UTR3:EXON_MRNA	C5orf24	ENSG00000181904.9	ENST00000338051.4:ENST00000394976.4:ENST00000504727.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.75921	4.86176	4.96431	2.77035e-4	1.20737e-4	0.00444204	0.00210079
chr2	174720153	174720235	2221020	0	+	0.560976	(0.53,0.59]	chr2	203051	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC018890.6:H3P6	ENSG00000236449.2:ENSG00000235655.3	ENST00000442996.1:ENST00000369387.4	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	72	2	3.97791	4.861745	5.74558	3.61407e-6	2.51849e-6	1.29307e-4	8.73415e-5
chr1	202944982	202945075	1453224	0	-	0.473118	(0.455,0.49]	chr1	146069	1	CDS	CDS:EXON_MRNA:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	4.42724	4.86127	5.2953	3.83905e-9	2.14063e-9	3.39055e-7	2.21896e-7
chr14	100333789	100333887	14788493	0	-	0.5	(0.49,0.53]	chr14	1158691	1	UTR3	UTR3:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.42954	4.86127	6.293	0.00105489	4.1349e-8	0.0123035	2.61265e-6
chr13	95186796	95186892	14111055	0	-	0.572917	(0.53,0.59]	chr13	1104430	2	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.13569	4.860495	5.5853	2.50241e-5	9.83355e-6	5.82427e-4	2.98194e-4
chr19	49338778	49338857	17369715	0	+	0.56962	(0.53,0.59]	chr19	1442757	2	CDS	CDS:UTR3:EXON_MRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000597852.5:ENST00000535669.6:ENST00000594743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.13569	4.860495	5.5853	2.50241e-5	9.83355e-6	5.82427e-4	2.98194e-4
chr9	130886081	130886181	10494292	0	+	0.58	(0.53,0.59]	chr9	792936	5	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.47419	4.860105	6.24602	8.75273e-4	1.15746e-7	0.0106963	6.3314e-6
chr12	12642289	12642386	12739305	0	+	0.28866000000000003	[0,0.29]	chr12	990284	4	UTR3	UTR3:EXON_MRNA	CREBL2	ENSG00000111269.3	ENST00000228865.3	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.1764	4.85998	5.54356	1.69626e-5	2.29995e-6	4.28575e-4	8.86852e-5
chr1	166853780	166853879	519996	0	+	0.434343	(0.42,0.455]	chr1	55860	35	UTR3	UTR3:EXON_MRNA	POGK	ENSG00000143157.12	ENST00000367876.9:ENST00000367875.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	4.22524	4.85976	5.49428	1.2079e-5	1.07978e-5	3.52389e-4	2.9314e-4
chr1	108992281	108992373	396809	0	+	0.456522	(0.455,0.49]	chr1	38396	1	EXON_PSEUDO	EXON_PSEUDO	RP11-20O24.4	ENSG00000244716.3	ENST00000414070.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	68	2	3.0141	4.859705	6.70531	9.3076e-4	9.72532e-10	0.0111917	1.02291e-7
chr6	27808405	27808502	7105129	0	+	0.608247	(0.59,1]	chr6	543451	2	CDS	CDS:EXON_MRNA	H2AC13	ENSG00000196747.4	ENST00000358739.4	protein_coding	protein_coding	protein_coding	protein_coding	3	204	2	4.54421	4.859615	5.17502	2.35191e-7	1.02099e-7	1.31076e-5	5.67476e-6
chr18	59349174	59349236	17142534	0	-	0.306452	(0.29,0.33]	chr18	1407641	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	3.88207	4.85938	5.83669	1.56259e-4	7.50822e-12	0.00282486	1.34747e-9
chr8	47777779	47777874	9815505	0	-	0.442105	(0.42,0.455]	chr8	742468	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	101	2	4.66972	4.859109999999999	5.0485	2.60143e-8	5.82077e-9	1.76574e-6	5.293e-7
chr1	32775980	32776080	923474	0	-	0.48	(0.455,0.49]	chr1	97311	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5:ENST00000478828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	4.58536	4.85909	5.13282	9.22269e-7	1.20095e-8	4.12764e-5	9.06312e-7
chr15	74409288	74409383	15374414	0	-	0.410526	(0.39,0.42]	chr15	1215146	1	UTR3	UTR3:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.63883	4.858675	5.07852	5.68159e-4	1.02164e-4	0.0077844	0.00183311
chr7	152181205	152181304	9135373	0	-	0.434343	(0.42,0.455]	chr7	698409	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	4.45249	4.8585650000000005	5.26464	2.45559e-6	3.91776e-9	9.39733e-5	3.44725e-7
chr4	87892928	87893027	4942245	0	+	0.474747	(0.455,0.49]	chr4	406011	12	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	165	2	3.83595	4.858485	5.88102	8.44734e-9	9.29068e-12	7.33647e-7	1.62474e-9
chr11	119044650	119044742	12626409	0	-	0.565217	(0.53,0.59]	chr11	979738	6	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.06939	4.85837	6.64735	6.54756e-4	4.80744e-9	0.00860229	4.10382e-7
chr1	145298373	145298460	1266169	0	-	0.482759	(0.455,0.49]	chr1	124161	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF20	ENSG00000162825.16	ENST00000392971.6:ENST00000369373.9:ENST00000622803.4:ENST00000594479.7:ENST00000620821.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.10535	4.85795	5.61055	0.0064531	3.16146e-6	0.0450905	1.16228e-4
chr9	61854564	61854653	10271580	0	+	0.505618	(0.49,0.53]	chr9	773201	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM27C	ENSG00000231527.7	ENST00000651393.1:ENST00000653087.1:ENST00000377542.3:ENST00000660875.1:ENST00000670686.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	3.8967	4.857365	5.81803	0.0128791	1.08721e-6	0.0725185	4.73591e-5
chr10	7798989	7799057	10915967	0	+	0.441176	(0.42,0.455]	chr10	831325	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	3.44537	4.857305	6.26924	8.6897e-5	4.53551e-8	0.00177086	2.82715e-6
chr13	46791345	46791413	14012423	0	-	0.426471	(0.42,0.455]	chr13	1098895	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.87922	4.857275	5.83533	1.04705e-4	1.15767e-6	0.0020295	4.52486e-5
chr19	12669127	12669180	17469931	0	-	0.509434	(0.49,0.53]	chr19	1462825	1	CDS	CDS:UTR3:EXON_MRNA	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.63338	4.8569949999999995	5.08061	9.56909e-4	1.00361e-4	0.010724	0.00196575
chr6	34236872	34236961	7124255	0	+	0.617977	(0.59,1]	chr6	548229	1	UTR5	UTR5:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1	protein_coding	protein_coding	protein_coding	protein_coding	19	1213	2	4.01509	4.8569949999999995	5.6989	4.32084e-9	1e-12	4.08005e-7	2.25522e-10
chr1	203707942	203708023	669544	0	+	0.493827	(0.49,0.53]	chr1	67438	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.67972	4.856764999999999	5.03381	6.94757e-4	1.49689e-4	0.00876781	0.0024973
chr8	37753449	37753529	9290028	0	+	0.5	(0.49,0.53]	chr8	710369	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000519638.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.67972	4.856764999999999	5.03381	6.94757e-4	1.49689e-4	0.00876781	0.0024973
chr2	63599169	63599230	1850059	0	+	0.47541	(0.455,0.49]	chr2	175423	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000436321.5:ENST00000421012.2:ENST00000432309.6:ENST00000484538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	3.32637	4.856465	6.38656	1.64563e-4	7.86964e-9	0.00269001	6.92982e-7
chr12	104273113	104273213	13058352	0	+	0.52	(0.49,0.53]	chr12	1017574	74	INTRON	INTRON	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	3.94177	4.856205	5.77064	0.0104929	1.94063e-6	0.063428	6.9799e-5
chr1	37545028	37545116	142348	0	+	0.488636	(0.455,0.49]	chr1	17756	4	EXON_PSEUDO	EXON_PSEUDO	FTH1P1	ENSG00000232273.1	ENST00000437933.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.20189	4.85616	5.51043	0.00397662	9.08728e-6	0.0322851	2.53877e-4
chr1	149811845	149811942	1286909	0	-	0.474227	(0.455,0.49]	chr1	127817	16	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC18	ENSG00000203814.6	ENST00000545683.1:ENST00000469483.1:ENST00000620458.1:ENST00000369167.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.20189	4.85616	5.51043	0.00397662	9.08728e-6	0.0322851	2.53877e-4
chr19	10350604	10350680	17459549	0	-	0.473684	(0.455,0.49]	chr19	1460805	2	UTR3	UTR3:EXON_MRNA	TYK2	ENSG00000105397.14	ENST00000264818.10:ENST00000525621.6:ENST00000524462.5:ENST00000530220.1:ENST00000525976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.20189	4.85616	5.51043	0.00397662	9.08728e-6	0.0322851	2.53877e-4
chr16	88087240	88087332	15803796	0	+	0.619565	(0.59,1]	chr16	1257764	1	EXON_LNCRNA	EXON_LNCRNA	RP11-863P13.6	ENSG00000260166.2	ENST00000566155.2	lncRNA	lncRNA	lncRNA	lncRNA	3	290	2	3.12211	4.8558	6.58949	7.51607e-4	2.06934e-12	0.00938882	4.32097e-10
chr11	119052732	119052829	12626520	0	-	0.597938	(0.59,1]	chr11	979809	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	306	2	4.45031	4.855585	5.26086	1.2083e-5	7.45434e-11	3.52389e-4	1.04951e-8
chr16	89935508	89935606	15812577	0	+	0.612245	(0.59,1]	chr16	1259312	9	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-566K11.2:TUBB3	ENSG00000198211.8:ENSG00000258947.8	ENST00000556922.1:ENST00000554444.5:ENST00000315491.12:ENST00000555576.5:ENST00000555609.5:ENST00000680788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	4.20036	4.85544	5.51052	0.00019737500000000001	4.07557e-5	0.00336487	8.75066e-4
chr20	32159991	32160051	17752576	0	+	0.416667	(0.39,0.42]	chr20	1498527	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	3.62271	4.854625	6.08654	2.66379e-5	5.44086e-8	6.1526e-4	3.65504e-6
chrX	66200539	66200586	18717628	0	+	0.510638	(0.49,0.53]	chrX	1597009	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	3.41615	4.8545750000000005	6.293	9.74162e-5	4.1349e-8	0.00193088	2.61265e-6
chr14	67691191	67691244	14683490	0	-	0.471698	(0.455,0.49]	chr14	1149648	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.43961	4.8545	6.26939	8.42878e-5	2.14641e-8	0.0015859	1.62968e-6
chr1	10419477	10419539	39911	0	+	0.564516	(0.53,0.59]	chr1	4835	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000498356.1:ENST00000496718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	83	2	3.32707	4.8544350000000005	6.3818	2.9609e-5	4.09818e-8	7.34242e-4	2.59819e-6
chr8	56010407	56010506	9343333	0	+	0.373737	(0.36,0.39]	chr8	714639	4	UTR3	UTR3:EXON_MRNA	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.58747	4.854005	5.12054	6.55819e-4	7.15553e-5	0.00860229	0.00137393
chr11	5268344	5268406	12240760	0	-	0.354839	(0.33,0.36]	chr11	946108	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000396895.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	102	2	4.44353	4.85363	5.26373	3.20943e-6	1.45979e-11	1.17669e-4	2.44266e-9
chr15	50182621	50182716	14925144	0	+	0.652632	(0.59,1]	chr15	1173393	2	CDS	CDS:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	4.03263	4.8535	5.67437	1.11254e-4	6.83706e-5	0.00213212	0.00132577
chr1	222734699	222734798	724629	0	+	0.373737	(0.36,0.39]	chr1	73180	21	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.71926	4.853345	4.98743	5.29682e-4	8.82225e-5	0.006804	0.00178337
chr7	100607936	100608003	8428020	0	+	0.552239	(0.53,0.59]	chr7	643278	1	CDS	CDS:EXON_MRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.66348	4.85323	5.04298	0.00107799	1.91383e-4	0.0118238	0.0032874
chr2	219224760	219224854	3191336	0	-	0.574468	(0.53,0.59]	chr2	280883	8	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000431715.5:ENST00000436856.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.66936	4.853205	5.03705	0.00103174	0.00020199200000000001	0.0121443	0.00317801
chr5	138925255	138925331	6248000	0	+	0.578947	(0.53,0.59]	chr5	486822	1	CDS	CDS:UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000521368.5:ENST00000521387.1:ENST00000519489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.66936	4.853205	5.03705	0.00103174	0.00020199200000000001	0.0121443	0.00317801
chr6	26183895	26183985	7101549	0	+	0.544444	(0.53,0.59]	chr6	542840	1	CDS	CDS:EXON_MRNA	H2BC6	ENSG00000274290.3	ENST00000634910.1:ENST00000614097.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.66936	4.853205	5.03705	0.00103174	0.00020199200000000001	0.0121443	0.00317801
chr17	46755919	46756016	16246436	0	+	0.443299	(0.42,0.455]	chr17	1315970	2	UTR3	UTR3:EXON_MRNA	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000575068.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	4.79418	4.853155	4.91213	1.75074e-4	2.10099e-7	0.00306313	1.05955e-5
chr3	170129455	170129552	4573912	0	-	0.381443	(0.36,0.39]	chr3	378573	9	CDS	CDS:EXON_MRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000497171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.69835	4.85315	6.00795	3.2708e-4	2.19402e-7	0.00502339	1.09601e-5
chr19	14404382	14404472	17242481	0	+	0.677778	(0.59,1]	chr19	1421841	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6:ENST00000591565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	3.8606	4.85274	5.84488	2.2997e-4	4.10826e-5	0.00352524	9.68079e-4
chr1	156009539	156009594	1313064	0	-	0.418182	(0.39,0.42]	chr1	133081	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	4.70138	4.852645000000001	5.00391	9.12714e-5	4.11166e-7	0.00182992	1.87588e-5
chr16	74496440	74496508	16031461	0	-	0.397059	(0.39,0.42]	chr16	1287369	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	4.81244	4.852309999999999	4.89218	1.6518e-4	1.71008e-7	0.0029267300000000002	8.87341e-6
chr17	17809539	17809621	16148036	0	+	0.792683	(0.59,1]	chr17	1301372	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAI1	ENSG00000108557.19	ENST00000353383.6:ENST00000582514.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	3.98751	4.852055	5.7166	0.0301044	5.56053e-5	0.129773	0.0011271
chr6	25086899	25086999	7641737	0	-	0.58	(0.53,0.59]	chr6	582087	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CMAHP	ENSG00000168405.17	ENST00000643807.1:ENST00000377989.8:ENST00000493257.5:ENST00000377993.8:ENST00000490939.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	2	72	2	4.00995	4.85203	5.69411	5.01544e-6	1.99748e-6	1.7067e-4	7.14901e-5
chr8	18061376	18061458	9732850	0	-	0.402439	(0.39,0.42]	chr8	736299	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000521542.2:ENST00000517409.2:ENST00000519545.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	4.02508	4.85182	5.67856	1.29189e-6	1.39129e-7	5.48279e-5	7.42875e-6
chr1	91719311	91719387	1164364	0	-	0.565789	(0.53,0.59]	chr1	114926	1	CDS	CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.43863	4.85177	5.26491	0.00254763	6.31437e-5	0.0233955	0.00124286
chr9	6835483	6835577	10173736	0	+	0.531915	(0.53,0.59]	chr9	766316	12	EXON_PSEUDO	EXON_PSEUDO:INTRON	KDM4C:ACTG1P14	ENSG00000107077.19:ENSG00000230581.2	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5:ENST00000446382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	31	2	4.43863	4.85177	5.26491	0.00254763	6.31437e-5	0.0233955	0.00124286
chr12	49128840	49128938	13323977	0	-	0.571429	(0.53,0.59]	chr12	1045746	9	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	542	2	4.42008	4.851514999999999	5.28295	1.95099e-12	1e-12	4.42946e-10	2.25522e-10
chr19	40605779	40605831	17330261	0	+	0.711538	(0.59,1]	chr19	1435952	2	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.11672	4.851355	5.58599	0.0222273	1.04372e-4	0.105595	0.00186841
chr1	203709380	203709461	669559	0	+	0.493827	(0.49,0.53]	chr1	67444	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.4279	4.851335000000001	5.27477	0.00196987	4.14521e-5	0.0193972	8.8376e-4
chr14	22926701	22926757	14527963	0	-	0.5	(0.49,0.53]	chr14	1138169	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000555530.5:ENST00000553550.5:ENST00000554716.5:ENST00000553787.5:ENST00000553641.5:ENST00000554867.5:ENST00000557415.5:ENST00000556616.5:ENST00000554910.5:ENST00000553417.1:ENST00000421938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.4279	4.851335000000001	5.27477	0.00196987	4.14521e-5	0.0193972	8.8376e-4
chr20	47210271	47210368	17993110	0	-	0.56701	(0.53,0.59]	chr20	1524924	12	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.8188	4.8513	5.8838	1.54941e-4	1.51824e-6	0.0028049	5.67784e-5
chr1	43364594	43364647	968549	0	-	0.45283	(0.42,0.455]	chr1	102056	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	45	2	4.02772	4.8512900000000005	5.67486	4.30844e-5	3.42598e-6	0.00100091	1.12506e-4
chr12	7814474	7814534	13192353	0	-	0.416667	(0.39,0.42]	chr12	1033375	2	CDS	CDS:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	3.93996	4.8512	5.76244	0.00841622	1.61725e-6	0.054565	5.98677e-5
chr2	10788769	10788796	2510771	0	-	0.185185	[0,0.29]	chr2	226681	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.36183	4.85112	5.34041	0.00170062	1.38223e-5	0.01759	3.58914e-4
chr11	71435742	71435819	12444404	0	-	0.714286	(0.59,1]	chr11	966974	2	CDS	CDS:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	328	2	4.3048	4.850875	5.39695	1.1064e-7	5.15108e-10	6.10183e-6	6.38908e-8
chr11	83212899	83212978	12041379	0	+	0.341772	(0.33,0.36]	chr11	928592	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANKRD42	ENSG00000137494.14	ENST00000533342.6:ENST00000393389.7:ENST00000260047.10:ENST00000526731.5:ENST00000531895.5:ENST00000393392.6	protein_coding	protein_coding	protein_coding	protein_coding	4	107	2	4.70626	4.8507750000000005	4.99529	4.7858e-9	2.45309e-10	4.44837e-7	3.01564e-8
chr3	37016915	37017014	4118140	0	-	0.525253	(0.49,0.53]	chr3	344290	5	EXON_PSEUDO	EXON_PSEUDO	RPL29P11	ENSG00000224858.5	ENST00000494408.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	3.73494	4.85074	5.96654	0.0189345	4.9393e-7	0.0934721	2.18407e-5
chr5	133089561	133089628	6227025	0	+	0.328358	(0.29,0.33]	chr5	484781	1	CDS	CDS:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.09886	4.85014	5.60142	4.1989e-5	2.77244e-6	9.84661e-4	9.47025e-5
chr2	41819929	41820020	1759265	0	+	0.406593	(0.39,0.42]	chr2	170657	3	EXON_PSEUDO	EXON_PSEUDO	LDHAP3	ENSG00000236090.2	ENST00000448312.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	43	2	3.93737	4.849905	5.76244	7.80292e-5	1.61725e-6	0.00162998	5.98677e-5
chr1	165743166	165743238	1341500	0	-	0.444444	(0.42,0.455]	chr1	137603	1	CDS	CDS:UTR3:EXON_MRNA	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	101	2	4.36901	4.8498149999999995	5.33062	1.02856e-7	1.41327e-9	5.71137e-6	1.53907e-7
chr17	35723624	35723699	16207498	0	+	0.4	(0.39,0.42]	chr17	1309153	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	4.49485	4.8496	5.20435	2.91423e-5	1.93637e-6	7.26551e-4	6.9799e-5
chr17	66314917	66315017	16321839	0	+	0.25	[0,0.29]	chr17	1324464	84	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	4.444	4.849584999999999	5.25517	2.33041e-5	4.9515e-6	5.51886e-4	1.69269e-4
chr1	203739571	203739662	669878	0	+	0.494505	(0.49,0.53]	chr1	67515	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.28332	4.8494600000000005	5.4156	0.00338762	1.84143e-5	0.0288632	4.53637e-4
chr1	203739754	203739854	669880	0	+	0.5	(0.49,0.53]	chr1	67516	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.28332	4.8494600000000005	5.4156	0.00338762	1.84143e-5	0.0288632	4.53637e-4
chr12	93399379	93399478	13019147	0	+	0.515152	(0.49,0.53]	chr12	1013446	1	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5:ENST00000548662.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28332	4.8494600000000005	5.4156	0.00338762	1.84143e-5	0.0288632	4.53637e-4
chr17	82764839	82764932	16385492	0	+	0.494624	(0.49,0.53]	chr17	1332894	4	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.28332	4.8494600000000005	5.4156	0.00338762	1.84143e-5	0.0288632	4.53637e-4
chr8	96834972	96835041	9502405	0	+	0.507246	(0.49,0.53]	chr8	722602	1	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.28332	4.8494600000000005	5.4156	0.00338762	1.84143e-5	0.0288632	4.53637e-4
chr1	77092373	77092473	1109216	0	-	0.37	(0.36,0.39]	chr1	111525	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.5987	4.84905	5.0994	9.0208e-4	4.68763e-5	0.0102618	0.00107286
chr4	4697693	4697792	4696089	0	+	0.383838	(0.36,0.39]	chr4	389984	71	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000608184.2:ENST00000653097.1:ENST00000499430.7:ENST00000610009.5:ENST00000665126.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.5987	4.84905	5.0994	9.0208e-4	4.68763e-5	0.0102618	0.00107286
chr19	35658647	35658714	17306091	0	+	0.58209	(0.53,0.59]	chr19	1431270	1	UTR3	UTR3:EXON_MRNA	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	14	461	2	3.90031	4.84851	5.79671	4.2914e-10	1e-12	5.4523e-8	2.25522e-10
chr7	861379	861464	8093785	0	+	0.529412	(0.49,0.53]	chr7	618469	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.68499	4.848305	6.01162	2.9991e-4	3.55916e-7	0.00472028	1.64926e-5
chr1	169921500	169921587	1360686	0	-	0.367816	(0.36,0.39]	chr1	139149	3	UTR3	UTR3:EXON_MRNA	KIFAP3	ENSG00000075945.13	ENST00000367767.5:ENST00000367765.5:ENST00000361580.7:ENST00000538366.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.83052	4.848275	4.86603	3.15227e-4	1.68962e-4	0.00452711	0.00297945
chr15	63581250	63581350	14973866	0	+	0.3	(0.29,0.33]	chr15	1176948	65	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	4.42307	4.84776	5.27245	3.04069e-6	2.75134e-9	1.02073e-4	2.7589e-7
chr11	9588700	9588799	11793798	0	+	0.333333	(0.33,0.36]	chr11	903118	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000530175.5:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	4.21361	4.847735	5.48186	1.64389e-5	7.22374e-6	4.56784e-4	2.11873e-4
chr11	57500778	57500855	12394845	0	-	0.532468	(0.53,0.59]	chr11	958784	1	CDS	CDS:UTR3:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.21941	4.8476300000000005	6.47585	0.00266171	1.951e-8	0.0240332	1.37715e-6
chr11	494887	494970	12226371	0	-	0.698795	(0.59,1]	chr11	943336	2	CDS	CDS:UTR3:EXON_MRNA	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.7945	4.846535	4.89857	0.0031766	0.00182139	0.0279054	0.0176016
chr17	42192574	42192658	16546581	0	-	0.702381	(0.59,1]	chr17	1357122	5	CDS	CDS:UTR3:EXON_MRNA	GHDC	ENSG00000167925.16	ENST00000593209.5:ENST00000587427.6:ENST00000414034.7:ENST00000301671.12:ENST00000428494.6:ENST00000588762.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.7945	4.846535	4.89857	0.0031766	0.00182139	0.0279054	0.0176016
chr11	119096899	119096997	12626614	0	-	0.55102	(0.53,0.59]	chr11	979850	10	UTR3	UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	125	2	4.27016	4.846465	5.42277	2.78714e-7	1.40169e-9	1.34066e-5	1.52885e-7
chr7	127704838	127704891	8515470	0	+	0.528302	(0.49,0.53]	chr7	649696	1	CDS	CDS:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	4.10142	4.84628	5.59114	5.02516e-6	8.9797e-7	1.7067e-4	3.64922e-5
chr11	117170454	117170552	12154370	0	+	0.55102	(0.53,0.59]	chr11	936189	29	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.00393	4.84602	5.68811	0.0108084	5.40688e-6	0.064368	1.64762e-4
chr6	160024571	160024637	7528097	0	+	0.424242	(0.42,0.455]	chr6	574722	1	CDS	CDS:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	2.57051	4.84596	7.12141	0.0265466	2.25308e-11	0.120071	3.59752e-9
chrX	23836934	23837031	19005197	0	-	0.443299	(0.42,0.455]	chrX	1617169	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	APOO:RPL9P7	ENSG00000184831.14:ENSG00000238103.4	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1:ENST00000330965.4	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	4	136	2	4.52518	4.84576	5.16634	2.23906e-8	6.34677e-11	1.68827e-6	9.09726e-9
chr6	26026841	26026940	7646919	0	-	0.464646	(0.455,0.49]	chr6	582481	10	UTR3	UTR3:EXON_MRNA	H4C2	ENSG00000278705.2	ENST00000377745.4	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.68903	4.84549	6.00195	1.71879e-5	1.86149e-7	4.32994e-4	1.07114e-5
chr16	14886760	14886811	15561151	0	+	0.431373	(0.42,0.455]	chr16	1232031	1	CDS	CDS:EXON_MRNA	NOMO1	ENSG00000103512.15	ENST00000287667.12:ENST00000620755.4:ENST00000610363.4:ENST00000565655.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.40276	4.84529	5.28782	0.0017618	3.65299e-5	0.0180053	7.95843e-4
chr2	96291391	96291446	2790449	0	-	0.454545	(0.42,0.455]	chr2	248787	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.40276	4.84529	5.28782	0.0017618	3.65299e-5	0.0180053	7.95843e-4
chr11	5505576	5505652	12243158	0	-	0.539474	(0.53,0.59]	chr11	946192	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	30	1071	2	4.61204	4.844955000000001	5.07787	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	52898460	52898519	13336923	0	-	0.525424	(0.49,0.53]	chr12	1048608	1	CDS	CDS:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000547031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	3.47167	4.84486	6.21805	6.95049e-5	7.46967e-8	0.00147069	4.33833e-6
chr1	93888789	93888889	1175423	0	-	0.33	(0.29,0.33]	chr1	115683	37	UTR3	UTR3:EXON_MRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	4.80322	4.844535	4.88585	2.14303e-4	7.90144e-8	0.00359478	4.56705e-6
chr1	40072370	40072463	151984	0	+	0.44086	(0.42,0.455]	chr1	19043	10	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	3.80052	4.844245	5.88797	3.72505e-7	1.68945e-7	1.92638e-5	8.80126e-6
chr2	195708655	195708749	2290655	0	+	0.425532	(0.42,0.455]	chr2	207604	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	3.8515	4.843415	5.83533	0.0119089	1.15767e-6	0.0686664	4.52486e-5
chr1	75763241	75763337	298854	0	+	0.302083	(0.29,0.33]	chr1	31236	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ACADM	ENSG00000117054.15	ENST00000679530.1:ENST00000680582.1:ENST00000473018.3:ENST00000680694.1:ENST00000541113.6:ENST00000681063.1:ENST00000681913.1:ENST00000680613.1:ENST00000680805.1:ENST00000681278.1:ENST00000681209.1:ENST00000680691.1:ENST00000681037.1:ENST00000679976.1:ENST00000680749.1:ENST00000681430.1:ENST00000681289.1:ENST00000680964.1:ENST00000679615.1:ENST00000681446.1:ENST00000681680.1:ENST00000681621.1:ENST00000681930.1:ENST00000679509.1:ENST00000680798.1:ENST00000681361.1:ENST00000681790.1:ENST00000681837.1:ENST00000680743.1:ENST00000681616.1:ENST00000680948.1:ENST00000681916.1:ENST00000679709.1:ENST00000370841.9:ENST00000370834.9:ENST00000680844.1:ENST00000681720.1:ENST00000681548.1:ENST00000681450.1:ENST00000679687.1:ENST00000680662.1:ENST00000679704.1:ENST00000680166.1:ENST00000681730.1:ENST00000532207.6:ENST00000528016.1:ENST00000481374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	3.83836	4.84328	5.8482	1.2308e-6	4.72847e-7	5.25619e-5	2.10391e-5
chr10	104267251	104267305	11236854	0	+	0.481481	(0.455,0.49]	chr10	856330	1	CDS	CDS:EXON_MRNA	GSTO1	ENSG00000148834.13	ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.53876	4.843249999999999	5.14774	7.45457e-5	1.31171e-6	0.00142165	5.53834e-5
chr1	20660880	20660935	882342	0	-	0.418182	(0.39,0.42]	chr1	91152	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1:ENST00000477229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	211	2	4.73501	4.843065	4.95112	3.00316e-9	1e-12	2.97712e-7	2.25522e-10
chr6	143504082	143504167	8005329	0	-	0.447059	(0.42,0.455]	chr6	611763	3	CDS	CDS:EXON_MRNA:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.37962	4.842925	6.30623	1.2947e-4	3.37116e-8	0.00242147	2.19621e-6
chr1	114707851	114707950	1239484	0	-	0.393939	(0.39,0.42]	chr1	121309	35	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	4.3053	4.84281	5.38032	9.82886e-6	7.30538e-6	2.98194e-4	2.13219e-4
chr21	45515657	45515757	18279064	0	-	0.54	(0.53,0.59]	chr21	1550594	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000460174.1:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.16383	4.842755	5.52168	0.00659193	1.48967e-5	0.0454205	3.81697e-4
chr22	15722510	15722608	18284206	0	+	0.581633	(0.53,0.59]	chr22	1551468	10	EXON_PSEUDO	EXON_PSEUDO	LA16c-3G11.7	ENSG00000241838.3	ENST00000417657.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.16383	4.842755	5.52168	0.00659193	1.48967e-5	0.0454205	3.81697e-4
chr22	26886908	26886989	18454492	0	-	0.567901	(0.53,0.59]	chr22	1574446	1	EXON_PSEUDO	EXON_PSEUDO	RP1-40G4P.1	ENSG00000231369.1	ENST00000422915.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.16383	4.842755	5.52168	0.00659193	1.48967e-5	0.0454205	3.81697e-4
chr7	857892	857957	8093748	0	+	0.569231	(0.53,0.59]	chr7	618457	2	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.16383	4.842755	5.52168	0.00659193	1.48967e-5	0.0454205	3.81697e-4
chr11	90283033	90283128	12059329	0	+	0.515789	(0.49,0.53]	chr11	929980	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	147	2	4.17576	4.84272	5.50968	6.00186e-9	3.51088e-10	5.00105e-7	4.5919e-8
chr1	11965479	11965536	45403	0	+	0.561404	(0.53,0.59]	chr1	5781	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000470133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	4.6384	4.84254	5.04668	8.42977e-7	3.63266e-8	3.83773e-5	2.34568e-6
chrX	154398366	154398442	18917583	0	+	0.592105	(0.59,1]	chrX	1611802	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000479366.1:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	63	3795	2	4.40252	4.842515000000001	5.28251	1.23055e-11	1e-12	2.28877e-9	2.25522e-10
chr1	26320202	26320302	108949	0	+	0.51	(0.49,0.53]	chr1	12988	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CD52	ENSG00000169442.9	ENST00000374213.3:ENST00000470468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	4.03352	4.842405	5.65129	3.38975e-6	1.50496e-6	1.23071e-4	5.64695e-5
chr12	93083397	93083497	13470825	0	-	0.49	(0.455,0.49]	chr12	1059323	784	INTRON	INTRON	RP11-511B23.2	ENSG00000257322.6	ENST00000550324.5:ENST00000549930.1	lncRNA	lncRNA	lncRNA	lncRNA	45	1232	2	4.76642	4.842065	4.91771	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	110327831	110327924	13085710	0	+	0.516129	(0.49,0.53]	chr12	1020497	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547050.1:ENST00000549840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	139	2	4.76481	4.84193	4.91905	7.12966e-8	1.57907e-10	4.62482e-6	2.02242e-8
chr4	39973363	39973442	5386178	0	-	0.506329	(0.49,0.53]	chr4	431807	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	PDS5A:RP11-333E13.2	ENSG00000121892.15:ENSG00000250568.1	ENST00000303538.13:ENST00000503396.5:ENST00000510152.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	6	198	2	3.99748	4.84189	5.6863	2.8205e-8	1e-12	2.06783e-6	2.25522e-10
chr1	207767778	207767823	689947	0	+	0.511111	(0.49,0.53]	chr1	70086	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	102	2	2.87851	4.841845	6.80518	2.96273e-5	3.30206e-10	6.71154e-4	4.346e-8
chr4	176328197	176328230	5242222	0	+	0.484848	(0.455,0.49]	chr4	421867	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000507001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	3.3605	4.84152	6.32254	0.00147278	2.62373e-8	0.0157578	1.77777e-6
chr17	80961675	80961770	16378068	0	+	0.673684	(0.59,1]	chr17	1331242	2	SS5_PROX	SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.34487	4.841435000000001	5.338	0.0123678	3.196e-4	0.0705839	0.00457916
chr11	70279683	70279782	12005622	0	+	0.40404	(0.39,0.42]	chr11	924586	69	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.78878	4.8404799999999994	4.89218	4.27222e-4	1.6518e-4	0.00577513	0.0029267300000000002
chr17	44352170	44352248	16234933	0	+	0.717949	(0.59,1]	chr17	1314583	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	154	2	4.52108	4.8403100000000006	5.15954	8.07535e-6	1.13516e-7	2.52239e-4	6.23788e-6
chr12	34023961	34024050	12822264	0	+	0.449438	(0.42,0.455]	chr12	995594	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000541178.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.54792	4.839805	5.13169	9.66045e-4	8.60227e-5	0.0115185	0.00160731
chr13	29523413	29523488	13945318	0	-	0.586667	(0.53,0.59]	chr13	1094584	3	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.46349	4.839755	6.21602	9.2216e-4	1.37682e-7	0.0104432	8.24248e-6
chr11	44234114	44234178	11927485	0	+	0.359375	(0.33,0.36]	chr11	911611	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1:ENST00000684437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.1284	4.839555	5.55071	0.00407303	4.61342e-6	0.0324137	0.00014480800000000001
chr19	9608514	9608613	17454847	0	-	0.343434	(0.33,0.36]	chr19	1459780	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF561	ENSG00000171469.11	ENST00000444802.5:ENST00000424629.5:ENST00000302851.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.1284	4.839555	5.55071	0.00407303	4.61342e-6	0.0324137	0.00014480800000000001
chr20	38128556	38128654	17962916	0	-	0.346939	(0.33,0.36]	chr20	1522305	13	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.1284	4.839555	5.55071	0.00407303	4.61342e-6	0.0324137	0.00014480800000000001
chr16	88646097	88646197	16073961	0	-	0.68	(0.59,1]	chr16	1291438	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000565588.5:ENST00000566229.1:ENST00000567174.5:ENST00000569359.5:ENST00000563526.5:ENST00000568278.1:ENST00000562209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	1085	2	4.68508	4.839475	4.99387	1.37216e-10	1e-12	1.99172e-8	2.25522e-10
chr1	202147509	202147609	1450171	0	-	0.53	(0.49,0.53]	chr1	145619	6	UTR3	UTR3:EXON_MRNA	PTPN7	ENSG00000143851.15	ENST00000309017.7:ENST00000367279.8:ENST00000495688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.51312	4.839345	5.16557	0.00156636	6.36135e-5	0.0156889	0.00136069
chr11	59806693	59806793	12401422	0	-	0.51	(0.49,0.53]	chr11	959579	1	CDS_START	CDS_START:CDS:EXON_MRNA	MRPL16	ENSG00000166902.5	ENST00000300151.5:ENST00000534340.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.51312	4.839345	5.16557	0.00156636	6.36135e-5	0.0156889	0.00136069
chr1	21854687	21854765	890977	0	-	0.576923	(0.53,0.59]	chr1	92398	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	171	2	3.99191	4.8391	5.68629	5.86351e-5	1e-12	0.00129243	2.25522e-10
chr9	36211674	36211774	10249964	0	+	0.58	(0.53,0.59]	chr9	771379	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000466396.5:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.62204	4.839065	6.05609	4.3021e-4	4.62627e-7	0.00620274	2.06661e-5
chr15	90962156	90962253	15104147	0	+	0.381443	(0.36,0.39]	chr15	1188919	5	UTR3	UTR3:EXON_MRNA	RCCD1	ENSG00000166965.12	ENST00000394258.6:ENST00000555155.5:ENST00000555737.5:ENST00000557266.5:ENST00000556618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.83695	4.839015	5.84108	6.15027e-6	3.0375e-7	1.8415e-4	1.62555e-5
chr11	125583774	125583865	12194211	0	+	0.516484	(0.49,0.53]	chr11	940681	2	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.55929	4.838985	5.11868	0.00116196	9.66505e-5	0.0130851	0.00175267
chr16	50151477	50151577	15943161	0	-	0.51	(0.49,0.53]	chr16	1278551	3	EXON_PSEUDO	EXON_PSEUDO	RPL10P14	ENSG00000260031.1	ENST00000565265.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.55929	4.838985	5.11868	0.00116196	9.66505e-5	0.0130851	0.00175267
chr19	46839464	46839542	17595640	0	-	0.512821	(0.49,0.53]	chr19	1481451	1	CDS	CDS:EXON_MRNA:INTRON	AP2S1	ENSG00000042753.12	ENST00000352203.8:ENST00000593442.5:ENST00000599990.5:ENST00000601498.5:ENST00000263270.11:ENST00000597020.5:ENST00000598027.1:ENST00000601649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.55929	4.838985	5.11868	0.00116196	9.66505e-5	0.0130851	0.00175267
chrX	16869075	16869134	18971937	0	-	0.508475	(0.49,0.53]	chrX	1615476	1	CDS_START	CDS_START:CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000468092.1:ENST00000493145.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.55929	4.838985	5.11868	0.00116196	9.66505e-5	0.0130851	0.00175267
chr14	33925694	33925792	14572093	0	-	0.428571	(0.42,0.455]	chr14	1141857	16	UTR3	UTR3:EXON_MRNA	EGLN3	ENSG00000129521.15	ENST00000250457.9:ENST00000553215.5:ENST00000556785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.84538	4.83887	5.83236	1.2691e-4	5.6476e-7	0.00219756	2.73442e-5
chr1	150967391	150967484	1291387	0	-	0.462366	(0.455,0.49]	chr1	128687	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000559660.1:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	179	2	3.23693	4.838855000000001	6.44078	1.91028e-6	1e-12	7.59721e-5	2.25522e-10
chr3	187072895	187072947	3960031	0	+	0.423077	(0.42,0.455]	chr3	334023	1	CDS	CDS:UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.05954	4.8383400000000005	5.61714	0.00617886	4.98624e-6	0.0439741	1.54467e-4
chr4	109463365	109463458	5039098	0	+	0.430108	(0.42,0.455]	chr4	409917	6	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.05954	4.8383400000000005	5.61714	0.00617886	4.98624e-6	0.0439741	1.54467e-4
chr13	78909777	78909873	13799346	0	+	0.364583	(0.36,0.39]	chr13	1085450	10	EXON_PSEUDO	EXON_PSEUDO	CCT5P2	ENSG00000230584.1	ENST00000432974.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.24194	4.838044999999999	5.43415	0.00276729	1.15393e-5	0.0247437	3.09736e-4
chr1	32226164	32226225	127510	0	+	0.57377	(0.53,0.59]	chr1	15793	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	4.09676	4.838035	5.57931	3.14727e-5	1.05602e-5	7.72298e-4	2.89015e-4
chr19	48913473	48913564	17367753	0	+	0.56044	(0.53,0.59]	chr19	1442134	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	220	2	4.12474	4.838015	5.55129	1.22868e-8	2.2724e-12	1.01118e-6	4.69669e-10
chr12	55726699	55726791	13347084	0	-	0.467391	(0.455,0.49]	chr12	1050341	1	CDS	CDS:UTR3:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5:ENST00000546457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	360	2	4.42418	4.837935	5.25169	1.72592e-11	1e-12	3.0944e-9	2.25522e-10
chr13	49661139	49661208	14019772	0	-	0.57971	(0.53,0.59]	chr13	1099595	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.5586	4.837835	5.11707	0.00161229	1.35965e-4	0.0169168	0.00231202
chr17	39995010	39995068	16222555	0	+	0.568965	(0.53,0.59]	chr17	1311743	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000485835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.5586	4.837835	5.11707	0.00161229	1.35965e-4	0.0169168	0.00231202
chr1	42758851	42758917	966561	0	-	0.409091	(0.39,0.42]	chr1	101769	1	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.14886	4.83756	5.52626	0.00415881	7.67816e-6	0.0325842	2.20857e-4
chr19	9774867	9774960	17223387	0	+	0.376344	(0.36,0.39]	chr19	1418074	5	EXON_PSEUDO	EXON_PSEUDO	UBE2L4	ENSG00000267741.1	ENST00000587688.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	43	2	4.37423	4.83723	5.30023	1.38946e-5	4.42053e-6	3.94563e-4	1.39924e-4
chr10	71828013	71828085	11563336	0	-	0.597222	(0.59,1]	chr10	880003	1	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	16	1155	2	3.667	4.83693	6.00686	1.16415e-7	1e-12	7.16017e-6	2.25522e-10
chr7	20140246	20140345	8714878	0	-	0.323232	(0.29,0.33]	chr7	665363	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AC005062.2:MACC1	ENSG00000243004.6:ENSG00000183742.13	ENST00000435968.5:ENST00000437191.5:ENST00000428100.1:ENST00000400331.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	23	2	4.45534	4.83685	5.21836	0.00110984	3.15783e-5	0.0127344	7.02218e-4
chr2	94899165	94899265	2785761	0	-	0.47	(0.455,0.49]	chr2	247804	60	INTRON	INTRON	AC097374.2	ENSG00000259848.9	ENST00000568768.5:ENST00000582835.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	169	2	4.54521	4.836845	5.12848	1.91271e-8	3.1003e-12	1.48078e-6	6.18079e-10
chr15	34228479	34228579	14860496	0	+	0.47	(0.455,0.49]	chr15	1167003	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000560911.5:ENST00000559078.5:ENST00000558205.5:ENST00000557879.1:ENST00000558102.1:ENST00000559421.1:ENST00000561246.1:ENST00000560947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	171	2	3.81698	4.83681	5.85664	7.1534e-6	1e-12	2.29129e-4	2.25522e-10
chr13	48258180	48258236	13724892	0	+	0.392857	(0.39,0.42]	chr13	1081335	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000650479.1:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000607866.1:ENST00000650237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.19588	4.8368	6.47772	0.00321212	6.35056e-9	0.0280721	5.21562e-7
chr11	57389240	57389317	12394240	0	-	0.571429	(0.53,0.59]	chr11	958611	4	CDS	CDS:UTR3:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1:ENST00000529411.1:ENST00000528835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	4.40844	4.836675	5.26491	6.31437e-5	9.04528e-8	0.00124286	5.73214e-6
chr1	21864842	21864919	891097	0	-	0.701299	(0.59,1]	chr1	92454	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	4.25966	4.836455	5.41325	3.01546e-4	2.95373e-5	0.00472028	6.69635e-4
chr2	27254736	27254832	2569520	0	-	0.510417	(0.49,0.53]	chr2	231265	12	UTR3	UTR3:EXON_MRNA	SLC30A3	ENSG00000115194.11	ENST00000233535.9:ENST00000497341.5:ENST00000482990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	4.25722	4.836410000000001	5.4156	1.84143e-5	1.00699e-5	4.53637e-4	3.03291e-4
chrX	50905608	50905694	18698805	0	+	0.488372	(0.455,0.49]	chrX	1595351	3	EXON_PSEUDO	EXON_PSEUDO	H3P44	ENSG00000226881.5	ENST00000475267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	45	2	4.0992	4.83619	5.57318	2.73975e-5	6.11867e-6	6.95757e-4	1.83393e-4
chr6	26321875	26321958	7647382	0	-	0.481928	(0.455,0.49]	chr6	582599	1	EXON_PSEUDO	EXON_PSEUDO	H3C9P	ENSG00000220875.1	ENST00000404612.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	103	2	4.65441	4.836180000000001	5.01795	2.66992e-8	8.25175e-9	1.97197e-6	6.5728e-7
chr3	33114269	33114362	3397527	0	+	0.72043	(0.59,1]	chr3	295467	2	CDS	CDS:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.44671	4.8361	5.22549	0.00931497	5.13843e-4	0.0586162	0.00665221
chr1	12580606	12580666	862219	0	-	0.583333	(0.53,0.59]	chr1	87525	1	CDS	CDS:UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	3.97791	4.83601	5.69411	5.01544e-6	2.51849e-6	1.7067e-4	8.73415e-5
chrX	12976776	12976811	18584859	0	+	0.485714	(0.455,0.49]	chrX	1587309	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.24286	4.83551	6.42816	2.77105e-4	1.09292e-8	0.00444204	8.34724e-7
chr10	104267305	104267405	11236855	0	+	0.52	(0.49,0.53]	chr10	856331	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GSTO1	ENSG00000148834.13	ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding	3	109	2	4.62422	4.83511	5.046	2.43728e-8	1.16248e-8	1.81945e-6	8.81286e-7
chr1	37996769	37996859	950317	0	-	0.488889	(0.455,0.49]	chr1	100148	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.76882	4.83507	5.90132	1.00626e-5	6.63378e-7	3.03291e-4	2.82038e-5
chr1	107505284	107505366	392061	0	+	0.451219	(0.42,0.455]	chr1	37755	2	EXON_PSEUDO	EXON_PSEUDO	NDUFA4P1	ENSG00000224550.1	ENST00000416095.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	29	2	4.24133	4.83501	5.42869	0.00326918	1.60756e-5	0.0282494	4.07445e-4
chr12	67304675	67304746	12934052	0	+	0.422535	(0.42,0.455]	chr12	1008090	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.24133	4.83501	5.42869	0.00326918	1.60756e-5	0.0282494	4.07445e-4
chr1	77979057	77979110	1112998	0	-	0.45283	(0.42,0.455]	chr1	111946	2	UTR5	UTR5:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.75728	4.834705	4.91213	5.3817e-4	1.75074e-4	0.00686676	0.00306313
chr12	7919328	7919427	13193156	0	-	0.454545	(0.42,0.455]	chr12	1033481	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000543435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.75728	4.834705	4.91213	5.3817e-4	1.75074e-4	0.00686676	0.00306313
chr1	21885084	21885157	891334	0	-	0.684932	(0.59,1]	chr1	92571	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.63106	4.8347	5.03834	0.00537945	0.00108238	0.0406564	0.0118355
chr11	62630836	62630929	12409766	0	-	0.591398	(0.59,1]	chr11	961276	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.65968	4.834565	5.00945	0.00413632	0.00149725	0.0324998	0.0159607
chr19	12880971	12881061	17471791	0	-	0.722222	(0.59,1]	chr19	1463265	1	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000592506.1	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	3.49172	4.8342	6.17668	2.24457e-5	7.29392e-6	5.34605e-4	2.3256e-4
chr3	129171657	129171757	4443910	0	-	0.59	(0.53,0.59]	chr3	369328	1	CDS_START	CDS_START:CDS:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	4.14645	4.834065	5.52168	2.32261e-5	1.48967e-5	6.06413e-4	3.81697e-4
chr5	140243311	140243411	6253239	0	+	0.56	(0.53,0.59]	chr5	487353	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	4.14645	4.834065	5.52168	2.32261e-5	1.48967e-5	6.06413e-4	3.81697e-4
chr11	121307234	121307323	12176657	0	+	0.41573	(0.39,0.42]	chr11	939026	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SC5D	ENSG00000109929.10	ENST00000264027.9:ENST00000534230.5:ENST00000392789.2:ENST00000528991.1:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	3.85207	4.83399	5.81591	1.28587e-4	1.11558e-6	0.00241206	4.4003e-5
chr10	124403858	124403920	11729320	0	-	0.516129	(0.49,0.53]	chr10	895065	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000483711.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	4.58675	4.83368	5.08061	1.00361e-4	1.05095e-6	0.00196575	4.17035e-5
chr21	44806804	44806904	18277278	0	-	0.49	(0.455,0.49]	chr21	1550219	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.36307	4.833489999999999	5.30391	0.00218641	3.12735e-5	0.0208941	6.97306e-4
chr8	65603909	65604005	9863362	0	-	0.354167	(0.33,0.36]	chr8	745690	16	UTR3	UTR3:EXON_MRNA	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.6856	4.833325	4.98105	3.92435e-4	1.32493e-4	0.00583618	0.00227943
chr15	75322593	75322693	15376656	0	-	0.74	(0.59,1]	chr15	1215649	13	EXON_LNCRNA	EXON_LNCRNA	ANP32BP1	ENSG00000259790.1	ENST00000564205.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	103	2	2.61074	4.833005	7.05527	0.025486	1.8899e-8	0.117089	1.34479e-6
chr10	32908480	32908532	11443962	0	-	0.5	(0.49,0.53]	chr10	872623	2	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	4.77195	4.833	4.89405	2.57983e-4	2.57118e-7	0.00419998	1.25706e-5
chr7	67193774	67193873	8309752	0	+	0.40404	(0.39,0.42]	chr7	633489	102	INTRON	INTRON	TYW1	ENSG00000198874.13	ENST00000615572.4:ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.55723	4.83242	5.10761	0.00117753	5.12039e-5	0.0127276	0.00114668
chr17	63756268	63756310	16634769	0	-	0.571429	(0.53,0.59]	chr17	1367589	1	CDS_START	CDS_START:CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	95	2	2.57867	4.83211	7.08555	0.00198261	1.02834e-10	0.0195088	1.39274e-8
chr3	40761799	40761896	3431062	0	+	0.340206	(0.33,0.36]	chr3	298457	1	INTRON	INTRON	RP11-761N21.1	ENSG00000231873.2	ENST00000665970.1	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	4.74257	4.83207	4.92157	6.41659e-8	3.00187e-9	4.22526e-6	2.73947e-7
chr12	48074323	48074417	13319378	0	-	0.425532	(0.42,0.455]	chr12	1044654	1	CDS	CDS:UTR3:EXON_MRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	4.14705	4.8319	5.51675	2.1071e-5	5.14372e-6	5.06044e-4	1.73456e-4
chr2	26201148	26201234	2565745	0	-	0.44186	(0.42,0.455]	chr2	230569	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	4.14705	4.8319	5.51675	2.1071e-5	5.14372e-6	5.06044e-4	1.73456e-4
chr1	19233065	19233135	877283	0	-	0.542857	(0.53,0.59]	chr1	90471	3	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.13569	4.831675000000001	5.52766	2.50241e-5	1.38993e-5	5.82427e-4	3.94563e-4
chr7	5528133	5528185	8659480	0	-	0.5	(0.49,0.53]	chr7	662114	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	449	2	4.79729	4.831495	4.8657	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	87207588	87207688	4941195	0	+	0.58	(0.53,0.59]	chr4	405801	6	EXON_PSEUDO	EXON_PSEUDO	GAPDHP60	ENSG00000248180.1	ENST00000513846.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	37	2	3.82407	4.830690000000001	5.8373100000000004	0.0179666	2.06883e-6	0.0918323	7.35008e-5
chr4	109463458	109463551	5039099	0	+	0.483871	(0.455,0.49]	chr4	409917	7	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	4.29617	4.830690000000001	5.36521	1.70053e-7	1.47552e-9	9.96621e-6	1.48481e-7
chr9	34399411	34399508	10636304	0	-	0.43299	(0.42,0.455]	chr9	804174	12	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379089.5:ENST00000379087.5:ENST00000379084.5:ENST00000379081.5:ENST00000379080.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.80064	4.83051	4.86038	3.34791e-4	3.0479e-4	0.00472923	0.00472028
chr9	36211774	36211869	10249965	0	+	0.389474	(0.36,0.39]	chr9	771380	1	UTR3	UTR3:EXON_MRNA:INTRON	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000466396.5:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	4.26916	4.830105	5.39105	9.09682e-6	7.73826e-6	2.53877e-4	2.43421e-4
chr7	128084723	128084786	8519295	0	+	0.555556	(0.53,0.59]	chr7	649797	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	148	2	4.47813	4.830005	5.18188	1.14815e-8	3.49029e-9	9.54306e-7	3.12471e-7
chr3	33024250	33024325	4111218	0	-	0.4	(0.39,0.42]	chr3	343458	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5:ENST00000467571.5:ENST00000473477.1:ENST00000482097.5:ENST00000485698.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	2.70591	4.829835	6.95376	0.0185716	8.21028e-11	0.0932453	1.14209e-8
chr3	14447650	14447720	3320442	0	+	0.571429	(0.53,0.59]	chr3	292226	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	93	2	3.34401	4.82976	6.31551	6.89617e-6	6.83735e-8	2.23425e-4	4.03413e-6
chr10	121713800	121713897	11290623	0	+	0.494845	(0.49,0.53]	chr10	860312	3	EXON_PSEUDO	EXON_PSEUDO	RPS15AP5	ENSG00000223540.1	ENST00000436276.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	3.94177	4.82949	5.71721	0.0104929	2.77472e-6	0.063428	9.47025e-5
chr5	146153892	146153980	6891471	0	-	0.375	(0.36,0.39]	chr5	527551	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.69835	4.82908	5.95981	3.2708e-4	3.15714e-7	0.00502339	1.49311e-5
chr2	64634066	64634164	2704982	0	-	0.255102	[0,0.29]	chr2	241251	26	UTR3	UTR3:EXON_MRNA	SERTAD2	ENSG00000179833.4	ENST00000313349.3	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	4.71546	4.8286750000000005	4.94189	4.78273e-8	7.74229e-9	2.96536e-6	6.82921e-7
chr8	100953341	100953388	9976566	0	-	0.702128	(0.59,1]	chr8	752791	1	EXON_LNCRNA	EXON_LNCRNA	YWHAZ	ENSG00000164924.18	ENST00000492736.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	78	2	3.39292	4.828555	6.26419	0.00192565	2.94176e-6	0.0191769	9.91141e-5
chr4	185772172	185772271	5835717	0	-	0.575758	(0.53,0.59]	chr4	458749	13	EXON_MRNA	EXON_MRNA:INTRON	SORBS2	ENSG00000154556.18	ENST00000284776.11:ENST00000448662.6:ENST00000319471.13:ENST00000437304.6:ENST00000449407.6:ENST00000355634.9:ENST00000393528.7:ENST00000319454.10:ENST00000470685.5:ENST00000439914.5:ENST00000444771.5:ENST00000450341.5:ENST00000430503.5:ENST00000445115.5:ENST00000457247.5:ENST00000456596.5:ENST00000425679.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000414724.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000457934.5:ENST00000431902.5:ENST00000415274.5:ENST00000435480.5:ENST00000432655.5:ENST00000451701.5:ENST00000428330.5:ENST00000464975.5:ENST00000464819.5:ENST00000478249.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5:ENST00000476878.1:ENST00000462661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	73	2	4.43863	4.82829	5.21795	0.00254763	8.67811e-9	0.0233955	6.8555e-7
chr1	1045963	1046025	2321	0	+	0.677419	(0.59,1]	chr1	513	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000479707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.11672	4.8282050000000005	5.53969	0.0222273	1.29608e-4	0.105595	0.00223885
chr1	154945855	154945950	1305911	0	-	0.642105	(0.59,1]	chr1	131551	4	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.11672	4.8282050000000005	5.53969	0.0222273	1.29608e-4	0.105595	0.00223885
chr12	3072057	3072145	13174253	0	-	0.704545	(0.59,1]	chr12	1030787	7	EXON_PSEUDO	EXON_PSEUDO	RP11-253E3.1	ENSG00000234589.4	ENST00000483097.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	41	2	4.11672	4.8282050000000005	5.53969	0.0222273	1.29608e-4	0.105595	0.00223885
chr6	43056080	43056138	7706897	0	-	0.465517	(0.455,0.49]	chr6	591199	1	CDS	CDS:EXON_MRNA:INTRON	RP1-20C7.7:MRPL2	ENSG00000288564.1:ENSG00000112651.12	ENST00000673761.1:ENST00000388752.8:ENST00000230413.9:ENST00000489623.1:ENST00000470667.5:ENST00000491898.5:ENST00000480286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.50805	4.827895	5.14774	0.00122223	7.45457e-5	0.0135383	0.00142165
chr8	143021689	143021789	9647075	0	+	0.72	(0.59,1]	chr8	730769	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	LY6E	ENSG00000160932.11	ENST00000517503.1:ENST00000429120.6:ENST00000521699.5:ENST00000520466.5:ENST00000292494.11:ENST00000522528.5:ENST00000521003.5:ENST00000522971.5:ENST00000519611.5:ENST00000521182.5:ENST00000519546.5:ENST00000523847.5:ENST00000522024.1	protein_coding	protein_coding	protein_coding	protein_coding	3	124	2	3.54137	4.82782	6.11427	1.95776e-5	6.89731e-6	5.26826e-4	0.00020353099999999999
chr2	73247761	73247843	1885453	0	+	0.439024	(0.42,0.455]	chr2	178558	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000409924.7:ENST00000473786.5:ENST00000488856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	4.22524	4.82781	5.43038	1.2079e-5	8.55058e-10	3.52389e-4	9.14514e-8
chrX	153982455	153982552	18916473	0	+	0.649485	(0.59,1]	chrX	1611536	4	CDS	CDS:EXON_MRNA	TMEM187	ENSG00000177854.8	ENST00000369982.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.70806	4.827505	5.94695	5.14321e-4	1.71208e-5	0.00719062	4.31898e-4
chr15	99258227	99258326	15142844	0	+	0.393939	(0.39,0.42]	chr15	1190792	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	8	348	2	3.1008	4.827435	6.55407	1.52175e-5	1e-12	4.27049e-4	2.25522e-10
chr8	143992841	143992936	9649813	0	+	0.694737	(0.59,1]	chr8	731413	1	UTR3	UTR3:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	162	2	2.64458	4.82686	7.00914	2.50921e-4	4.72152e-8	0.00378625	3.24728e-6
chr21	45509355	45509437	18145919	0	+	0.707317	(0.59,1]	chr21	1539850	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	4.19092	4.82681	5.4627	2.43542e-4	1.87257e-6	0.00399705	6.8003e-5
chr5	1815850	1815916	5852808	0	+	0.515152	(0.49,0.53]	chr5	460322	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFS6	ENSG00000145494.12	ENST00000274137.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	4.1249	4.826635	5.52837	2.4461e-5	7.50805e-6	5.72214e-4	2.3779e-4
chr7	130178401	130178464	9063268	0	-	0.365079	(0.36,0.39]	chr7	692161	1	CDS	CDS:EXON_MRNA:INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000479804.1:ENST00000467599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	4.09565	4.8264	5.55715	2.81403e-5	2.50226e-6	6.42183e-4	9.53193e-5
chr11	88300529	88300587	12533130	0	-	0.413793	(0.39,0.42]	chr11	972528	1	CDS	CDS:UTR3:EXON_MRNA	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000678065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.51636	4.826395	6.13643	6.99837e-4	3.57957e-8	0.00846751	2.56228e-6
chr15	43763076	43763141	14896458	0	+	0.461538	(0.455,0.49]	chr15	1171279	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	369	2	4.46999	4.82606	5.18213	4.22001e-11	1e-12	6.93507e-9	2.25522e-10
chr10	55667890	55667982	11514039	0	-	0.5	(0.49,0.53]	chr10	877456	7	EXON_PSEUDO	EXON_PSEUDO	GAPDHP21	ENSG00000236993.2	ENST00000450301.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	49	2	3.68499	4.8257650000000005	5.96654	2.9991e-4	4.9393e-7	0.00472028	2.18407e-5
chr11	17372005	17372086	11827946	0	+	0.407407	(0.39,0.42]	chr11	905451	1	CDS	CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.3313	4.825495	5.31969	0.00209984	2.68682e-5	0.0204266	6.19143e-4
chr20	34575174	34575246	17947164	0	-	0.527778	(0.49,0.53]	chr20	1520033	2	CDS	CDS:EXON_MRNA	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.47167	4.825365	6.17906	6.95049e-5	1.01082e-7	0.00147069	5.6272e-6
chr1	19231341	19231422	877262	0	-	0.518519	(0.49,0.53]	chr1	90461	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	4.48557	4.825315	5.16506	3.59269e-8	9.90322e-9	2.56668e-6	7.695e-7
chr10	32911526	32911626	11443996	0	-	0.52	(0.49,0.53]	chr10	872637	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	4.32769	4.82474	5.32179	2.63311e-5	6.54988e-6	6.73425e-4	1.94116e-4
chr9	137184612	137184712	10893354	0	-	0.64	(0.59,1]	chr9	828455	3	SS5_PROX	SS5_PROX:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	3.56392	4.82441	6.0849	8.86707e-4	1.19649e-5	0.0101815	3.513e-4
chr6	56871282	56871374	7189909	0	+	0.434783	(0.42,0.455]	chr6	555910	2	EXON_PSEUDO	EXON_PSEUDO	RPL17P26	ENSG00000216854.2	ENST00000407033.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	47	2	3.62315	4.823980000000001	6.0248100000000004	4.234e-4	2.97136e-7	0.00613535	1.42027e-5
chr4	3524969	3525032	5285776	0	-	0.587302	(0.53,0.59]	chr4	425835	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1:ENST00000650633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.47419	4.823605000000001	6.17302	8.75273e-4	1.98983e-7	0.0106963	1.01095e-5
chrX	130066226	130066324	19220962	0	-	0.469388	(0.455,0.49]	chrX	1633279	24	UTR3	UTR3:EXON_MRNA	ELF4	ENSG00000102034.17	ENST00000308167.10:ENST00000335997.11:ENST00000615377.4	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	3.37718	4.823285	6.26939	2.04354e-5	2.14641e-8	4.9659e-4	1.62968e-6
chr2	197503259	197503354	2292634	0	+	0.336842	(0.33,0.36]	chr2	207886	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPE1:HSPE1-MOB4	ENSG00000115541.11:ENSG00000270757.1	ENST00000409729.1:ENST00000233893.10:ENST00000409468.1:ENST00000604458.1:ENST00000465573.1:ENST00000463841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	102	2	4.76747	4.82312	4.87877	2.36168e-9	8.09451e-10	2.22809e-7	9.51449e-8
chr7	93219198	93219296	8927920	0	-	0.459184	(0.455,0.49]	chr7	681291	2	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	4.39836	4.8228	5.24724	3.09759e-5	7.82907e-8	7.62166e-4	4.52822e-6
chr1	207759638	207759724	689860	0	+	0.337209	(0.33,0.36]	chr1	70070	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	250	2	4.42835	4.822705	5.21706	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	40292506	40292569	153227	0	+	0.301587	(0.29,0.33]	chr1	19195	2	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1:ENST00000474142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.6953	4.822675	4.95005	4.88271e-4	9.78718e-5	0.00638318	0.0019344
chr1	51473546	51473645	1015458	0	-	0.30303	(0.29,0.33]	chr1	105114	2	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000371727.5:ENST00000471391.1:ENST00000465467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.6953	4.822675	4.95005	4.88271e-4	9.78718e-5	0.00638318	0.0019344
chr17	81900032	81900100	16381603	0	+	0.617647	(0.59,1]	chr17	1332123	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000583839.1:ENST00000578544.1:ENST00000575195.2:ENST00000585259.1:ENST00000573956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.54183	4.822645	5.10346	0.0070583	8.40506e-4	0.0478044	0.00981548
chr3	52492579	52492677	3478483	0	+	0.469388	(0.455,0.49]	chr3	304739	2	UTR3	UTR3:EXON_MRNA	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.77318	4.82252	4.87186	4.7888e-4	2.33781e-4	0.00628636	0.00385436
chr5	157452307	157452407	6934153	0	-	0.48	(0.455,0.49]	chr5	531076	537	INTRON	INTRON	CTB-109A12.2:ADAM19	ENSG00000285868.1:ENSG00000135074.16	ENST00000519499.2:ENST00000517951.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.77318	4.82252	4.87186	4.7888e-4	2.33781e-4	0.00628636	0.00385436
chr1	111182242	111182298	406190	0	+	0.410714	(0.39,0.42]	chr1	39896	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.93737	4.822145	5.70692	7.80292e-5	2.36087e-6	0.00162998	8.27472e-5
chr19	14405747	14405843	17242497	0	+	0.614583	(0.59,1]	chr19	1421849	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.4666	4.82164	6.17668	0.00133574	7.29392e-6	0.0139317	2.3256e-4
chr1	201978641	201978718	661862	0	+	0.571429	(0.53,0.59]	chr1	66406	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P4	ENSG00000238003.1	ENST00000412093.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	56	2	4.51944	4.821225	5.12301	1.2852e-4	2.00484e-6	0.00241206	7.16652e-5
chr1	54226530	54226630	1028120	0	-	0.44	(0.42,0.455]	chr1	106759	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	4.12545	4.8210999999999995	5.51675	5.14372e-6	7.35278e-7	1.73456e-4	3.07142e-5
chrX	109544219	109544315	18819184	0	+	0.28125	[0,0.29]	chrX	1603879	17	UTR3	UTR3:EXON_MRNA	NXT2	ENSG00000101888.12	ENST00000218004.5:ENST00000372106.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.57416	4.82104	5.06792	6.75561e-4	6.88295e-5	0.00873562	0.00133223
chr4	182890345	182890441	5826109	0	-	0.541667	(0.53,0.59]	chr4	457566	4	UTR3	UTR3:EXON_MRNA	DCTD	ENSG00000129187.15	ENST00000500813.6:ENST00000438320.7:ENST00000357067.7:ENST00000507543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.30776	4.820635	5.33351	0.00407289	4.35359e-5	0.0324137	0.00091744700000000005
chr6	3154538	3154634	7571344	0	-	0.541667	(0.53,0.59]	chr6	577786	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBB2A	ENSG00000137267.7	ENST00000679400.1:ENST00000333628.4:ENST00000679907.1:ENST00000680036.1:ENST00000680967.1:ENST00000489942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.30776	4.820635	5.33351	0.00407289	4.35359e-5	0.0324137	0.00091744700000000005
chr6	32168694	32168791	7664646	0	-	0.56701	(0.53,0.59]	chr6	586094	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	127	2	4.02165	4.8199749999999995	5.6183	1.81563e-6	2.43197e-10	7.32965e-5	2.99496e-8
chr17	81846984	81847068	16709531	0	-	0.47619	(0.455,0.49]	chr17	1377690	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	336	2	3.65703	4.81953	5.98203	1.41541e-7	1e-12	8.45411e-6	2.25522e-10
chr2	26028291	26028375	2565605	0	-	0.535714	(0.53,0.59]	chr2	230514	2	EXON_PSEUDO	EXON_PSEUDO	TRMT112P6	ENSG00000268412.2	ENST00000599234.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	34	2	4.00393	4.819335000000001	5.63474	0.0108084	7.53339e-6	0.064368	2.17987e-4
chr1	181050102	181050194	587295	0	+	0.5	(0.49,0.53]	chr1	60853	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MR1	ENSG00000153029.16	ENST00000614012.5:ENST00000684662.1:ENST00000434571.7:ENST00000367580.6:ENST00000683652.1:ENST00000617803.5:ENST00000282990.10:ENST00000367579.7:ENST00000438435.6:ENST00000367578.1:ENST00000684375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.74438	4.819215	4.89405	5.91752e-4	2.57983e-4	0.00743488	0.00419998
chr1	156465587	156465685	1315198	0	-	0.510204	(0.49,0.53]	chr1	133558	20	UTR3	UTR3:EXON_MRNA	MEF2D	ENSG00000116604.18	ENST00000348159.9:ENST00000464356.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.79086	4.8191500000000005	4.84744	4.20783e-4	3.70203e-4	0.00611538	0.00515475
chr10	93959372	93959470	11628237	0	-	0.510204	(0.49,0.53]	chr10	885413	13	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PIPSL	ENSG00000180764.13	ENST00000480546.1:ENST00000489875.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	27	2	4.79086	4.8191500000000005	4.84744	4.20783e-4	3.70203e-4	0.00611538	0.00515475
chr17	64005131	64005211	16636206	0	-	0.525	(0.49,0.53]	chr17	1368049	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5:ENST00000584084.1:ENST00000584403.5:ENST00000580011.1:ENST00000580389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.79086	4.8191500000000005	4.84744	4.20783e-4	3.70203e-4	0.00611538	0.00515475
chr20	38952322	38952420	17787113	0	+	0.5	(0.49,0.53]	chr20	1503189	9	CDS	CDS:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.79086	4.8191500000000005	4.84744	4.20783e-4	3.70203e-4	0.00611538	0.00515475
chr3	46095621	46095720	3451393	0	+	0.525253	(0.49,0.53]	chr3	300641	33	INTRON	INTRON	RP11-91E8.2	ENSG00000288703.1	ENST00000682415.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.79086	4.8191500000000005	4.84744	4.20783e-4	3.70203e-4	0.00611538	0.00515475
chr3	152419687	152419787	3818063	0	+	0.44	(0.42,0.455]	chr3	325657	42	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.52594	4.81906	5.11218	0.00144145	6.01815e-5	0.0147046	0.00130886
chr10	30339125	30339225	11436315	0	-	0.37	(0.36,0.39]	chr10	871981	17	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.16143	4.818960000000001	5.47649	0.00486719	4.3709e-6	0.0366328	1.52262e-4
chr1	45514933	45514995	978336	0	-	0.467742	(0.455,0.49]	chr1	103095	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	8	221	2	4.55011	4.81857	5.08703	9.65348e-11	6.5804e-12	1.4569e-8	1.20072e-9
chr17	44075709	44075787	16234048	0	+	0.692308	(0.59,1]	chr17	1314332	1	CDS	CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	4.49996	4.818375	5.13679	9.28022e-4	7.55563e-6	0.0111748	2.18445e-4
chr14	30885881	30885967	14201262	0	+	0.44186	(0.42,0.455]	chr14	1112913	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.67981	4.818205	4.9566	5.38444e-4	2.10615e-4	0.00744072	0.00327655
chr17	82765302	82765395	16385497	0	+	0.451613	(0.42,0.455]	chr17	1332894	9	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.67981	4.818205	4.9566	5.38444e-4	2.10615e-4	0.00744072	0.00327655
chr1	669793	669893	823729	0	-	0.59	(0.53,0.59]	chr1	81486	368	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	53	2	4.23022	4.817595	5.40497	2.83308e-5	1.38676e-5	7.12614e-4	3.5918e-4
chr6	27133364	27133464	7104128	0	+	0.58	(0.53,0.59]	chr6	543284	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC11	ENSG00000196787.3	ENST00000359193.3	protein_coding	protein_coding	protein_coding	protein_coding	11	264	2	2.94458	4.81752	6.69046	2.44919e-6	1e-12	9.39175e-5	2.25522e-10
chr19	14404472	14404562	17242482	0	+	0.577778	(0.53,0.59]	chr19	1421841	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6:ENST00000591565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.76633	4.81728	4.86823	6.98999e-4	4.35895e-4	0.00846751	0.00623608
chr7	159018438	159018536	8639477	0	+	0.55102	(0.53,0.59]	chr7	660126	4	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.76633	4.81728	4.86823	6.98999e-4	4.35895e-4	0.00846751	0.00623608
chr1	28743204	28743301	118414	0	+	0.57732000000000006	(0.53,0.59]	chr1	14542	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.77222	4.817270000000001	4.86232	6.67251e-4	4.57805e-4	0.00867533	0.00608573
chr13	20961801	20961899	13633281	0	+	0.581633	(0.53,0.59]	chr13	1074745	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP54	ENSG00000213621.3	ENST00000454001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	29	2	4.77222	4.817270000000001	4.86232	6.67251e-4	4.57805e-4	0.00867533	0.00608573
chr14	102009842	102009923	14495430	0	+	0.530864	(0.53,0.59]	chr14	1133086	1	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.77222	4.817270000000001	4.86232	6.67251e-4	4.57805e-4	0.00867533	0.00608573
chr1	432746	432846	821956	0	-	0.58	(0.53,0.59]	chr1	81335	525	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	4.43279	4.81581	5.19883	0.0026472	8.7034e-5	0.0231864	0.00177086
chr2	47904592	47904692	2634992	0	-	0.54	(0.53,0.59]	chr2	237146	1	SS5_PROX	SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.43279	4.81581	5.19883	0.0026472	8.7034e-5	0.0231864	0.00177086
chr1	632743	632843	823358	0	-	0.43	(0.42,0.455]	chr1	81483	3	SS5_PROX	SS5_PROX:PRIMIRNA:INTRON	RP11-206L10.17:ENSG00000278791	ENSG00000230021.10:ENSG00000278791.1	ENST00000419394.2:ENST00000440196.3:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000621981.1	miRNA	processed_transcript	miRNA:transcribed_processed_pseudogene	processed_transcript:primary_miRNA	2	65	2	4.58474	4.8157700000000006	5.0468	1.33918e-4	1.29366e-8	0.00229039	1.05882e-6
chr1	44000766	44000862	969381	0	-	0.552083	(0.53,0.59]	chr1	102255	1	CDS	CDS:EXON_MRNA	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.43863	4.815754999999999	5.19288	0.00254763	9.22873e-5	0.0233955	0.0016906
chr1	150512351	150512424	468349	0	+	0.547945	(0.53,0.59]	chr1	47406	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.43863	4.815754999999999	5.19288	0.00254763	9.22873e-5	0.0233955	0.0016906
chr2	120907561	120907661	2032623	0	+	0.58	(0.53,0.59]	chr2	192109	1097	INTRON	INTRON	GLI2	ENSG00000074047.22	ENST00000472722.5:ENST00000482119.6:ENST00000361492.9:ENST00000341310.10:ENST00000438299.5:ENST00000445186.5:ENST00000452692.5:ENST00000418323.6:ENST00000437950.5:ENST00000452319.6:ENST00000433812.1:ENST00000360874.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.43863	4.815754999999999	5.19288	0.00254763	9.22873e-5	0.0233955	0.0016906
chr6	30700564	30700632	7658996	0	-	0.544118	(0.53,0.59]	chr6	584205	1	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000489540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.43863	4.815754999999999	5.19288	0.00254763	9.22873e-5	0.0233955	0.0016906
chr10	46003487	46003572	11026554	0	+	0.482353	(0.455,0.49]	chr10	839311	3	UTR3	UTR3:EXON_MRNA	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.22752	4.8156099999999995	5.4037	1.24055e-5	1.20695e-5	3.52389e-4	3.28918e-4
chr15	84080326	84080426	15071307	0	+	0.7	(0.59,1]	chr15	1185402	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EFL1P1	ENSG00000259404.5	ENST00000560401.5:ENST00000558187.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	84	5026	2	3.29006	4.815295	6.34053	3.63529e-8	1e-12	2.58534e-6	2.25522e-10
chr2	26373366	26373453	1687170	0	+	0.494253	(0.49,0.53]	chr2	164927	1	CDS	CDS:EXON_MRNA:INTRON	SELENOI	ENSG00000138018.18	ENST00000442141.5:ENST00000613142.4:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.28332	4.81511	5.3469	0.00338762	2.75121e-5	0.0288632	6.30607e-4
chr9	5787502	5787593	10542564	0	-	0.494505	(0.49,0.53]	chr9	799363	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.28332	4.81511	5.3469	0.00338762	2.75121e-5	0.0288632	6.30607e-4
chr2	195716728	195716820	2290737	0	+	0.391304	(0.39,0.42]	chr2	207616	2	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.42584	4.8150949999999995	5.20435	0.00199429	2.91423e-5	0.0189001	7.26551e-4
chr12	53412909	53413008	12886197	0	+	0.434343	(0.42,0.455]	chr12	1002329	18	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	6	173	2	4.24025	4.815065	5.38988	2.38017e-9	6.32361e-12	2.43226e-7	1.15667e-9
chr11	62626114	62626165	12409699	0	-	0.529412	(0.49,0.53]	chr11	961229	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	192	2	4.25184	4.81437	5.3769	2.59344e-7	1e-12	1.42291e-5	2.25522e-10
chr14	60292679	60292777	14324330	0	+	0.295918	(0.29,0.33]	chr14	1119748	3	UTR3	UTR3:EXON_MRNA	PPM1A	ENSG00000100614.18	ENST00000325642.7:ENST00000532036.2:ENST00000395076.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.24387	4.813925	5.38398	0.00263476	1.15499e-5	0.0239118	3.09736e-4
chr7	108572986	108573075	8457660	0	+	0.314607	(0.29,0.33]	chr7	646358	2	CDS	CDS:EXON_MRNA:INTRON	DNAJB9	ENSG00000128590.5	ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.24387	4.813925	5.38398	0.00263476	1.15499e-5	0.0239118	3.09736e-4
chr11	61795743	61795838	11971304	0	+	0.526316	(0.49,0.53]	chr11	917378	4	CDS	CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000535723.1:ENST00000574708.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.38192	4.813855	5.24579	0.00259709	4.073e-5	0.0229695	9.64741e-4
chr8	23197131	23197204	9756685	0	-	0.60274	(0.59,1]	chr8	737621	1	CDS	CDS:EXON_MRNA	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1:ENST00000519862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.34487	4.813855	5.28284	0.0123678	4.04404e-4	0.0705839	0.00550292
chr1	154946613	154946708	1305919	0	-	0.726316	(0.59,1]	chr1	131551	12	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.37323	4.813515000000001	5.2538	0.00990413	5.85045e-4	0.061536	0.00793559
chr4	47706371	47706459	4824049	0	+	0.511364	(0.49,0.53]	chr4	397622	1	EXON_PSEUDO	EXON_PSEUDO	RP11-100N21.1	ENSG00000242262.1	ENST00000487352.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.4279	4.813365	5.19883	0.00196987	6.30063e-5	0.0193972	0.00124286
chr5	96783050	96783142	6721168	0	-	0.5	(0.49,0.53]	chr5	517406	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000514604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.4279	4.813365	5.19883	0.00196987	6.30063e-5	0.0193972	0.00124286
chr12	7829765	7829845	13192513	0	-	0.5625	(0.53,0.59]	chr12	1033412	1	CDS	CDS:EXON_MRNA:INTRON	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5:ENST00000546234.5:ENST00000542782.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.99191	4.813325	5.63474	5.86351e-5	7.53339e-6	0.00129243	2.17987e-4
chr11	6617364	6617428	12249963	0	-	0.5625	(0.53,0.59]	chr11	946863	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	121	2	4.47937	4.813195	5.14702	5.03415e-8	1.58171e-8	3.41647e-6	1.14917e-6
chr11	64765290	64765388	12419185	0	-	0.316327	(0.29,0.33]	chr11	962880	8	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	4.24209	4.813035	5.38398	1.15499e-5	4.66515e-7	3.09736e-4	2.32449e-5
chr1	21855303	21855374	890985	0	-	0.676056	(0.59,1]	chr1	92404	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	4.68441	4.812855	4.9413	0.00191468	2.49298e-6	0.0190905	8.66637e-5
chr10	104266083	104266136	11236841	0	+	0.377358	(0.36,0.39]	chr10	856324	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSTO1	ENSG00000148834.13	ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	3.10506	4.8127949999999995	6.52053	7.38785e-4	3.19261e-9	0.00924579	2.88796e-7
chr16	29664557	29664648	15626155	0	+	0.758242	(0.59,1]	chr16	1239195	9	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	491	2	4.78161	4.8127949999999995	4.84398	3.26304e-9	1.98262e-10	2.9424e-7	2.77186e-8
chr11	61302307	61302359	12403907	0	-	0.576923	(0.53,0.59]	chr11	960178	2	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2:ENST00000679855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.16383	4.812735	5.46164	0.00659193	2.11519e-5	0.0454205	5.06522e-4
chr14	54430356	54430392	14635524	0	-	0.555556	(0.53,0.59]	chr14	1146401	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.16383	4.812735	5.46164	0.00659193	2.11519e-5	0.0454205	5.06522e-4
chr8	22416210	22416280	9224981	0	+	0.542857	(0.53,0.59]	chr8	705693	3	CDS	CDS:EXON_MRNA	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000517370.1:ENST00000518348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.16383	4.812735	5.46164	0.00659193	2.11519e-5	0.0454205	5.06522e-4
chr8	53731675	53731775	9831263	0	-	0.48	(0.455,0.49]	chr8	743810	153	INTRON	INTRON	ATP6V1H	ENSG00000047249.18	ENST00000359530.7:ENST00000355221.7:ENST00000518072.1:ENST00000520188.5:ENST00000523343.1:ENST00000522159.5:ENST00000523899.5:ENST00000396774.6:ENST00000524164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	147	2	3.28995	4.8125599999999995	6.33517	3.81851e-5	1e-12	9.15499e-4	2.25522e-10
chr11	121307145	121307234	12176656	0	+	0.325843	(0.29,0.33]	chr11	939026	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SC5D	ENSG00000109929.10	ENST00000264027.9:ENST00000534230.5:ENST00000392789.2:ENST00000528991.1:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	3.51776	4.812405	6.10705	9.94392e-5	6.22381e-8	0.00195926	3.71811e-6
chr18	3277333	3277414	16729908	0	+	0.419753	(0.39,0.42]	chr18	1380130	2	CDS	CDS:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	4	121	2	4.64466	4.811745	4.97883	7.24568e-9	3.65354e-10	6.4511e-7	4.29466e-8
chr7	105247513	105247613	8972112	0	-	0.32	(0.29,0.33]	chr7	686727	406	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.41812	4.8117	5.20528	0.00162106	2.18753e-5	0.0161179	5.75389e-4
chr20	37210105	37210165	17777675	0	+	0.516667	(0.49,0.53]	chr20	1502036	2	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	7	248	2	4.29426	4.81165	5.32904	1.27569e-8	1e-12	1.04657e-6	2.25522e-10
chr17	42422997	42423097	16548417	0	-	0.71	(0.59,1]	chr17	1357388	1	CDS_START	CDS_START:CDS:EXON_MRNA	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.74795	4.811065	5.87418	4.30112e-4	2.5071e-5	0.00620274	5.82734e-4
chr1	39963132	39963222	151554	0	+	0.577778	(0.53,0.59]	chr1	18922	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	MFSD2A:RP3-342P20.2	ENSG00000168389.18:ENSG00000228477.1	ENST00000420632.6:ENST00000372811.10:ENST00000434861.5:ENST00000372809.5:ENST00000483824.5:ENST00000469745.5:ENST00000438210.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	0	29	2	4.66936	4.8108450000000005	4.95233	0.00103174	3.02711e-4	0.0121443	0.00439897
chr11	9384651	9384707	11792246	0	+	0.732143	(0.59,1]	chr11	902794	1	UTR5	UTR5:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	104	2	2.89783	4.810755	6.72368	0.00198798	1.74657e-7	0.0195488	9.04749e-6
chr1	247298673	247298770	1604011	0	-	0.381443	(0.36,0.39]	chr1	159286	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.99	4.810715	5.63143	6.1616e-5	3.24005e-6	0.00133408	1.07746e-4
chr1	235113838	235113910	1560112	0	-	0.486111	(0.455,0.49]	chr1	156019	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000467767.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	3.43538	4.810505	6.18563	3.2185e-6	4.30535e-8	1.07226e-4	2.9886e-6
chr5	37299507	37299568	6540026	0	-	0.360656	(0.36,0.39]	chr5	506517	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	3.06725	4.810295	6.55334	2.06648e-4	2.38303e-9	0.00350209	2.24337e-7
chr1	40423231	40423326	154048	0	+	0.4	(0.39,0.42]	chr1	19281	13	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	4.09419	4.810225	5.52626	2.95839e-5	7.67816e-6	7.34143e-4	2.20857e-4
chr19	48330370	48330470	17365263	0	+	0.65	(0.59,1]	chr19	1441709	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EMP3	ENSG00000142227.11	ENST00000596315.5:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1:ENST00000597057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	519	2	4.52532	4.80982	5.09432	9.76898e-10	2.83804e-10	1.12361e-7	3.43679e-8
chr2	170966230	170966330	2206510	0	+	0.51	(0.49,0.53]	chr2	201863	2	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.90194	4.809575	5.71721	9.11374e-5	2.77472e-6	0.00182992	9.47025e-5
chr22	41515376	41515455	18380933	0	+	0.518987	(0.49,0.53]	chr22	1564570	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000478010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.90194	4.809575	5.71721	9.11374e-5	2.77472e-6	0.00182992	9.47025e-5
chr19	10284572	10284657	17224635	0	+	0.623529	(0.59,1]	chr19	1418502	3	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.53648	4.8094	6.08232	0.00107706	8.23309e-6	0.0124943	2.34786e-4
chr19	19121758	19121819	17502079	0	-	0.590164	(0.59,1]	chr19	1468663	1	CDS	CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000591031.6:ENST00000590216.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.53648	4.8094	6.08232	0.00107706	8.23309e-6	0.0124943	2.34786e-4
chr7	99396107	99396202	8946536	0	-	0.642105	(0.59,1]	chr7	682923	16	UTR3	UTR3:EXON_MRNA:INTRON	PDAP1	ENSG00000106244.13	ENST00000496335.1:ENST00000350498.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.44238	4.8092500000000005	6.17612	0.00158239	4.87365e-6	0.0167793	1.51951e-4
chrX	135973596	135973675	19248673	0	-	0.683544	(0.59,1]	chrX	1635161	1	CDS_START	CDS_START:CDS:EXON_MRNA	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000681201.1:ENST00000679621.1:ENST00000680510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	3.98751	4.80918	5.63085	0.0301044	8.43355e-5	0.129773	0.0015859
chr11	61303100	61303155	12403917	0	-	0.436364	(0.42,0.455]	chr11	960182	2	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000540166.5:ENST00000538470.2:ENST00000679855.1:ENST00000539332.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.31161	4.8089200000000005	6.30623	0.00186138	3.37116e-8	0.018635	2.19621e-6
chr1	28281000	28281100	115650	0	+	0.62	(0.59,1]	chr1	14152	3	UTR3	UTR3:EXON_MRNA	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.7945	4.8088750000000005	4.82325	0.0031766	0.002381	0.0279054	0.0216895
chr9	129006501	129006578	10482857	0	+	0.714286	(0.59,1]	chr9	791185	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.7945	4.8088750000000005	4.82325	0.0031766	0.002381	0.0279054	0.0216895
chr9	14921707	14921806	10581562	0	-	0.525253	(0.49,0.53]	chr9	800961	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	157	2	3.40711	4.80886	6.21061	3.97231e-6	1e-12	1.4013e-4	2.25522e-10
chr1	25294063	25294163	903336	0	-	0.39	(0.36,0.39]	chr1	93965	263	INTRON	INTRON	RSRP1	ENSG00000117616.18	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.58747	4.808835	5.0302	6.55819e-4	1.15931e-4	0.00860229	0.00204552
chr5	176500074	176500146	6402607	0	+	0.375	(0.36,0.39]	chr5	497375	2	CDS	CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.58747	4.808835	5.0302	6.55819e-4	1.15931e-4	0.00860229	0.00204552
chr17	82006041	82006140	16382060	0	+	0.606061	(0.59,1]	chr17	1332220	18	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.01545	4.80855	5.60165	0.0251889	1.30928e-4	0.114168	0.00243846
chr1	40078628	40078658	954727	0	-	0.4	(0.39,0.42]	chr1	100872	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1:ENST00000527311.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	4.007	4.8082899999999995	5.60958	2.11003e-6	1.77795e-6	8.25026e-5	6.48503e-5
chr13	29530624	29530712	13945393	0	-	0.420455	(0.42,0.455]	chr13	1094596	2	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.05954	4.80828	5.55702	0.00617886	7.30994e-6	0.0439741	2.13219e-4
chr18	23560230	23560313	17037566	0	-	0.433735	(0.42,0.455]	chr18	1400619	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.40276	4.807315	5.21187	0.0017618	5.5797e-5	0.0180053	0.00112719
chr13	29532823	29532902	13945416	0	-	0.518987	(0.49,0.53]	chr13	1094602	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	4.62422	4.80728	4.99034	1.6002e-4	1.16248e-8	0.00286408	8.81286e-7
chr1	42179411	42179510	964202	0	-	0.464646	(0.455,0.49]	chr1	101503	30	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	4.63075	4.80716	4.98357	3.60162e-8	1.02236e-8	2.56668e-6	7.89931e-7
chr11	60899148	60899226	12402786	0	-	0.602564	(0.59,1]	chr11	959906	1	CDS	CDS:EXON_MRNA:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000539960.1:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.7151	4.8068349999999995	4.89857	0.00412279	0.00182139	0.0325842	0.0176016
chr17	75845895	75845995	16685219	0	-	0.69	(0.59,1]	chr17	1373618	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.7151	4.8068349999999995	4.89857	0.00412279	0.00182139	0.0325842	0.0176016
chrX	133763091	133763189	18862849	0	+	0.581633	(0.53,0.59]	chrX	1607274	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP63	ENSG00000233260.1	ENST00000412013.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	36	2	3.82407	4.8066700000000004	5.78927	0.0179666	2.83401e-6	0.0918323	9.62519e-5
chr17	44375908	44375985	16558029	0	-	0.597403	(0.59,1]	chr17	1359428	2	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.44671	4.806235	5.16576	0.00931497	6.55716e-4	0.0586162	0.0080931
chr6	44153759	44153843	7161034	0	+	0.642857	(0.59,1]	chr6	553614	2	CDS	CDS:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.44671	4.806235	5.16576	0.00931497	6.55716e-4	0.0586162	0.0080931
chr10	73139308	73139401	11569288	0	-	0.473118	(0.455,0.49]	chr10	880560	1	CDS	CDS:UTR3:EXON_MRNA	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.63978	4.8061799999999995	4.97258	6.94032e-4	1.84876e-4	0.00876781	0.00296795
chr19	4492624	4492720	17206793	0	+	0.458333	(0.455,0.49]	chr19	1414889	4	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.63978	4.8061799999999995	4.97258	6.94032e-4	1.84876e-4	0.00876781	0.00296795
chr19	7640134	7640207	17217839	0	+	0.479452	(0.455,0.49]	chr19	1416904	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.63978	4.8061799999999995	4.97258	6.94032e-4	1.84876e-4	0.00876781	0.00296795
chr22	19507385	19507451	18295647	0	+	0.621212	(0.59,1]	chr22	1552783	1	CDS	CDS:UTR3:EXON_MRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.47517	4.80598	5.13679	0.00735659	9.28022e-4	0.0491503	0.0111748
chr16	172875	172912	15480726	0	+	0.567568	(0.53,0.59]	chr16	1224191	1	UTR5	UTR5:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	407	2	4.62764	4.8057549999999996	4.98387	2.1354e-12	1e-12	4.44778e-10	2.46312e-10
chr3	137880294	137880391	3765635	0	+	0.463918	(0.455,0.49]	chr3	322089	1	EXON_PSEUDO	EXON_PSEUDO	HSPA8P9	ENSG00000241478.1	ENST00000485881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	65	2	2.92099	4.8054500000000004	6.68991	0.00138399	5.0034e-10	0.0143168	6.24299e-8
chr6	44232051	44232106	7161507	0	+	0.6	(0.59,1]	chr6	553804	2	CDS	CDS:UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000472176.2:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646251.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	124	2	3.72918	4.805445	5.88171	3.41939e-5	5.26949e-6	8.3505e-4	1.61486e-4
chr19	20259031	20259128	17267292	0	+	0.412371	(0.39,0.42]	chr19	1426851	8	EXON_PSEUDO	EXON_PSEUDO	AC078899.1	ENSG00000213985.4	ENST00000521432.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.14886	4.80475	5.46064	0.00415881	1.15573e-5	0.0325842	3.09736e-4
chr9	76398796	76398895	10312896	0	+	0.414141	(0.39,0.42]	chr9	776488	2	EXON_PSEUDO	EXON_PSEUDO	RPSAP9	ENSG00000234618.1	ENST00000418207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.14886	4.80475	5.46064	0.00415881	1.15573e-5	0.0325842	3.09736e-4
chr2	27040113	27040198	1690668	0	+	0.552941	(0.53,0.59]	chr2	165361	2	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000444135.5:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	133	2	4.53023	4.804625	5.07902	1.83321e-6	2.43819e-10	7.37353e-5	2.99944e-8
chr2	73249084	73249179	1885467	0	+	0.547368	(0.53,0.59]	chr2	178564	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000473786.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	161	2	4.45611	4.80436	5.15261	6.10792e-8	1.20694e-10	4.04881e-6	1.60408e-8
chr3	33093590	33093684	4111939	0	-	0.638298	(0.59,1]	chr3	343556	8	CDS	CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.11672	4.80428	5.49184	0.0222273	1.61513e-4	0.105595	0.00265627
chr2	159004519	159004619	2160138	0	+	0.31	(0.29,0.33]	chr2	198982	3	INTRON	INTRON	TANC1	ENSG00000115183.15	ENST00000263635.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	4.18644	4.80426	5.42208	1.56826e-5	5.31413e-6	3.99464e-4	1.7831e-4
chr15	52937828	52937926	15289452	0	-	0.520408	(0.49,0.53]	chr15	1206821	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P22	ENSG00000259612.1	ENST00000559385.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	107	2	4.16626	4.80414	5.44202	5.42608e-7	6.71743e-10	2.37553e-5	8.07767e-8
chr8	144317332	144317388	10148338	0	-	0.589286	(0.53,0.59]	chr8	763462	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	DGAT1:MIR6848	ENSG00000185000.12:ENSG00000284229.1	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5:ENST00000611213.1:ENST00000527885.1:ENST00000524844.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	1	64	2	4.66936	4.804095	4.93883	0.00103174	8.67024e-8	0.0121443	4.94425e-6
chr2	132256070	132256168	2878633	0	-	0.408163	(0.39,0.42]	chr2	257829	29	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	3	69	2	2.91508	4.8040650000000005	6.69305	4.41174e-4	9.45807e-10	0.0062930699999999996	9.98109e-8
chr3	33114362	33114455	3397528	0	+	0.763441	(0.59,1]	chr3	295467	3	CDS	CDS:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	4.00624	4.803945000000001	5.60165	1.30928e-4	1.12192e-4	0.00243846	0.00199438
chr21	33553803	33553902	18101195	0	+	0.313131	(0.29,0.33]	chr21	1534527	32	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	4.80322	4.803815	4.80441	2.14303e-4	1.56681e-7	0.00359478	8.23739e-6
chr8	27810304	27810404	9771141	0	-	0.42	(0.39,0.42]	chr8	738650	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	4.40319	4.80377	5.20435	2.91423e-5	3.72195e-6	7.26551e-4	1.21063e-4
chr10	24123052	24123152	10970124	0	+	0.34	(0.33,0.36]	chr10	834636	802	INTRON	INTRON	KIAA1217	ENSG00000120549.18	ENST00000376462.5:ENST00000636305.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.20756	4.8037600000000005	5.39996	0.00386591	6.52649e-6	0.0310764	2.12073e-4
chr3	98796234	98796332	4319959	0	-	0.336735	(0.33,0.36]	chr3	360313	4	UTR3	UTR3:EXON_MRNA	DCBLD2	ENSG00000057019.16	ENST00000326840.11	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.20756	4.8037600000000005	5.39996	0.00386591	6.52649e-6	0.0310764	2.12073e-4
chr20	35669130	35669228	17955155	0	-	0.387755	(0.36,0.39]	chr20	1521129	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP1-309K20.6:NFS1	ENSG00000272897.5:ENSG00000244005.13	ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000374092.9:ENST00000374085.5:ENST00000480655.5:ENST00000498084.5:ENST00000397425.5:ENST00000440385.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.80225	4.803595	5.80494	1.85308e-4	9.78955e-7	0.00322093	3.91899e-5
chr4	118732732	118732822	5617924	0	-	0.5	(0.49,0.53]	chr4	447569	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5:ENST00000511715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	3.73494	4.803425	5.87191	0.0189345	9.67449e-7	0.0934721	3.88631e-5
chr6	7339020	7339111	7587403	0	-	0.549451	(0.53,0.59]	chr6	578773	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	SSR1:CAGE1:RP11-69L16.5	ENSG00000124783.14:ENSG00000164304.16:ENSG00000220472.1	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8:ENST00000407940.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	54	2	4.4133	4.803089999999999	5.19288	9.22873e-5	4.11992e-6	0.0016906	1.44702e-4
chr19	52221055	52221133	17382244	0	+	0.538462	(0.53,0.59]	chr19	1445784	2	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5:ENST00000391791.4	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.55001	4.80305	6.05609	6.11776e-4	4.62627e-7	0.00818575	2.06661e-5
chr11	4135081	4135175	11774442	0	+	0.414894	(0.39,0.42]	chr11	901048	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	4.14477	4.80281	5.46085	2.09513e-5	5.81708e-6	5.04211e-4	1.921e-4
chr1	111542176	111542276	1225605	0	-	0.46	(0.455,0.49]	chr1	120030	387	INTRON	INTRON	TMIGD3	ENSG00000121933.19	ENST00000369717.8:ENST00000443498.5	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	3.5549	4.802505	6.05011	1.33044e-7	1.27868e-7	7.7505e-6	7.15974e-6
chr5	176388819	176388919	6401933	0	+	0.58	(0.53,0.59]	chr5	497298	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.06939	4.80235	6.53531	6.54756e-4	1.20872e-8	0.00860229	9.09817e-7
chr1	155256272	155256372	1307279	0	-	0.62	(0.59,1]	chr1	132093	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	4.59513	4.80229	5.00945	0.00149725	4.29216e-6	0.0159607	1.3648e-4
chr3	49024967	49025040	4171677	0	-	0.575342	(0.53,0.59]	chr3	350219	2	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000466147.5:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000484872.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000481274.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.39416	4.802075	6.20999	0.00126006	1.51461e-7	0.013837	8.00634e-6
chr15	29701012	29701109	15183782	0	-	0.381443	(0.36,0.39]	chr15	1195074	18	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.24194	4.801925	5.36191	0.00276729	1.79406e-5	0.0247437	4.45904e-4
chr19	10285187	10285287	17224644	0	+	0.52	(0.49,0.53]	chr19	1418509	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.12263	4.801905	5.48118	0.00591451	1.24248e-5	0.0427941	3.28918e-4
chr11	57389163	57389240	12394239	0	-	0.571429	(0.53,0.59]	chr11	958611	3	CDS	CDS:UTR3:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1:ENST00000529411.1:ENST00000528835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	210	2	3.53807	4.801835	6.0656	8.58296e-8	3.1708e-12	5.4657e-6	6.28185e-10
chr3	32190746	32190843	3393472	0	+	0.494845	(0.49,0.53]	chr3	295224	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP11	ENSG00000237433.1	ENST00000443010.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	3.94177	4.801745	5.66172	0.0104929	3.99372e-6	0.063428	1.28691e-4
chr4	145375897	145375986	5146232	0	+	0.494382	(0.49,0.53]	chr4	416391	5	EXON_PSEUDO	EXON_PSEUDO	RTN3P1	ENSG00000251333.3	ENST00000536295.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	3.94177	4.801745	5.66172	0.0104929	3.99372e-6	0.063428	1.28691e-4
chr3	152296709	152296809	3816823	0	+	0.35	(0.33,0.36]	chr3	325621	266	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	3.59868	4.80169	6.0047	8.657e-7	6.70662e-8	3.53908e-5	4.38033e-6
chr13	36965574	36965650	13968755	0	-	0.434211	(0.42,0.455]	chr13	1095984	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000460230.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.24133	4.800649999999999	5.35997	0.00326918	2.41298e-5	0.0282494	5.6648e-4
chr3	183679286	183679384	3946032	0	+	0.44898	(0.42,0.455]	chr3	331446	1	UTR3	UTR3:EXON_MRNA	KLHL24	ENSG00000114796.16	ENST00000242810.11:ENST00000454652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.24133	4.800649999999999	5.35997	0.00326918	2.41298e-5	0.0282494	5.6648e-4
chr3	187043141	187043225	3959728	0	+	0.452381	(0.42,0.455]	chr3	334001	5	CDS	CDS:EXON_MRNA:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000464827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.24133	4.800649999999999	5.35997	0.00326918	2.41298e-5	0.0282494	5.6648e-4
chr5	109362839	109362930	6755025	0	-	0.43956	(0.42,0.455]	chr5	518824	1	CDS	CDS:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.24133	4.800649999999999	5.35997	0.00326918	2.41298e-5	0.0282494	5.6648e-4
chr5	134676073	134676125	6230342	0	+	0.442308	(0.42,0.455]	chr5	485186	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.24133	4.800649999999999	5.35997	0.00326918	2.41298e-5	0.0282494	5.6648e-4
chr11	6618873	6618915	12249982	0	-	0.761905	(0.59,1]	chr11	946871	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647346.1:ENST00000647209.1:ENST00000530040.2:ENST00000524903.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6:ENST00000528917.1:ENST00000531754.2:ENST00000528657.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.63106	4.800605	4.97015	0.00537945	0.00140057	0.0406564	0.0144327
chr11	57500987	57501043	12394849	0	-	0.678571	(0.59,1]	chr11	958788	1	CDS	CDS:UTR3:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.63106	4.800605	4.97015	0.00537945	0.00140057	0.0406564	0.0144327
chr22	37676956	37677056	18363180	0	+	0.65	(0.59,1]	chr22	1561863	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LGALS1	ENSG00000100097.12	ENST00000215909.10:ENST00000464120.1:ENST00000425542.5:ENST00000480207.5:ENST00000454173.1:ENST00000489315.5:ENST00000472321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.63106	4.800605	4.97015	0.00537945	0.00140057	0.0406564	0.0144327
chr11	88294346	88294427	12533066	0	-	0.432099	(0.42,0.455]	chr11	972520	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.94929	4.80034	5.65139	2.78395e-6	2.06893e-6	9.49154e-5	8.11386e-5
chr1	103570308	103570407	384167	0	+	0.535354	(0.53,0.59]	chr1	37229	21	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	AMY2B:ACTG1P4	ENSG00000240038.7:ENSG00000236085.1	ENST00000477657.5:ENST00000361355.8:ENST00000435302.5:ENST00000453959.5:ENST00000491397.1:ENST00000425123.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	118	2	3.75615	4.80025	5.84435	2.16536e-4	2.83514e-11	0.00361336	4.41773e-9
chr11	46428950	46429050	12381381	0	-	0.51	(0.49,0.53]	chr11	955794	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	AMBRA1:RP11-425L10.1	ENSG00000110497.15:ENSG00000244313.3	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000467930.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	61	2	3.54118	4.80016	6.05914	4.50577e-5	1.86307e-7	9.4221e-4	1.07114e-5
chr10	22536319	22536417	11411113	0	-	0.418367	(0.39,0.42]	chr10	869854	16	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	2.9359	4.800155	6.66441	1.95323e-5	2.81745e-10	4.76369e-4	3.77963e-8
chr12	30630169	30630267	13276771	0	-	0.346939	(0.33,0.36]	chr12	1040595	13	UTR3	UTR3:EXON_MRNA	IPO8	ENSG00000133704.10	ENST00000256079.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.52266	4.8001000000000005	5.07754	8.34989e-4	7.92926e-5	0.0102956	0.00150306
chr12	110345248	110345315	13085899	0	+	0.432836	(0.42,0.455]	chr12	1020547	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	131	2	4.39704	4.79986	5.20268	3.59669e-5	1.3696e-10	8.71318e-4	1.79163e-8
chr22	21762545	21762645	18442376	0	-	0.32	(0.29,0.33]	chr22	1572508	30	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	12	228	2	4.39526	4.799300000000001	5.20334	2.28584e-12	1e-12	4.71328e-10	2.46312e-10
chr3	134783555	134783654	4466121	0	-	0.222222	[0,0.29]	chr3	371262	1	INTRON	INTRON	RP11-22E12.1	ENSG00000286982.1	ENST00000656103.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	4.52986	4.79889	5.06792	6.88295e-5	2.59766e-6	0.00133223	9.8651e-5
chr20	34575103	34575174	17947163	0	-	0.43662	(0.42,0.455]	chr20	1520033	1	CDS	CDS:EXON_MRNA	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.39468	4.79868	5.20268	0.00240483	3.59669e-5	0.0217482	8.71318e-4
chr4	87892237	87892335	4942238	0	+	0.469388	(0.455,0.49]	chr4	406011	5	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	117	2	4.19333	4.798315	5.4033	3.27933e-8	7.61238e-10	2.15416e-6	9.03421e-8
chr5	96780422	96780504	6721140	0	-	0.439024	(0.42,0.455]	chr5	517392	1	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000512852.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	4.54792	4.79821	5.0485	9.66045e-4	2.60143e-8	0.0115185	1.76574e-6
chr15	43763141	43763206	14896459	0	+	0.4	(0.39,0.42]	chr15	1171279	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	279	2	4.61292	4.797969999999999	4.98302	7.57383e-12	1e-12	1.48263e-9	2.25522e-10
chr10	101782838	101782924	11665758	0	-	0.581395	(0.53,0.59]	chr10	889329	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM3	ENSG00000107833.10	ENST00000370110.5:ENST00000474993.5:ENST00000462391.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.5586	4.797825	5.03705	0.00161229	0.00020199200000000001	0.0169168	0.00317801
chr12	120768324	120768406	13581770	0	-	0.585366	(0.53,0.59]	chr12	1069230	1	CDS	CDS:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000392495.7:ENST00000545209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.5586	4.797825	5.03705	0.00161229	0.00020199200000000001	0.0169168	0.00317801
chr9	136416950	136417038	10512245	0	+	0.545455	(0.53,0.59]	chr9	796196	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000620895.1:ENST00000462616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.5586	4.797825	5.03705	0.00161229	0.00020199200000000001	0.0169168	0.00317801
chr1	96448119	96448218	366408	0	+	0.474747	(0.455,0.49]	chr1	35865	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	195	2	4.25376	4.7975650000000005	5.34137	1.67588e-8	1e-12	1.32342e-6	2.25522e-10
chr3	150572243	150572338	3807847	0	+	0.421053	(0.42,0.455]	chr3	325029	4	CDS	CDS:UTR3:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000477551.5:ENST00000465535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	4.79418	4.797409999999999	4.80064	3.0479e-4	2.10099e-7	0.00472028	1.05955e-5
chrX	119453536	119453630	18841485	0	+	0.43617	(0.42,0.455]	chrX	1605545	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A43	ENSG00000077713.19	ENST00000217909.8:ENST00000488158.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.54792	4.79736	5.0468	9.66045e-4	1.33918e-4	0.0115185	0.00229039
chr5	132213915	132213984	6833674	0	-	0.536232	(0.53,0.59]	chr5	522728	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5:ENST00000395164.5:ENST00000453286.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	4.77222	4.797245	4.82227	6.67251e-4	2.15841e-7	0.00867533	1.08163e-5
chr7	10933535	10933635	8678210	0	-	0.38	(0.36,0.39]	chr7	663708	17	UTR3	UTR3:EXON_MRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000482299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	316	2	4.52163	4.796905000000001	5.07218	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	22924095	22924183	14527928	0	-	0.511364	(0.49,0.53]	chr14	1138144	2	CDS	CDS:UTR3:EXON_MRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000555454.5:ENST00000553915.5:ENST00000553897.5:ENST00000553502.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.51312	4.796865	5.08061	0.00156636	1.00361e-4	0.0156889	0.00196575
chr18	5233147	5233237	17000269	0	-	0.455556	(0.455,0.49]	chr18	1397057	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-835E18.5	ENSG00000265091.5	ENST00000581170.5:ENST00000579933.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.0204	4.79679	5.57318	0.00736097	6.11867e-6	0.0490627	1.83393e-4
chr21	27420471	27420563	18195988	0	-	0.48913	(0.455,0.49]	chr21	1544319	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	AP001604.3:RPL10P1	ENSG00000231236.2:ENSG00000217026.3	ENST00000420186.2:ENST00000447844.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	30	2	4.0204	4.79679	5.57318	0.00736097	6.11867e-6	0.0490627	1.83393e-4
chr12	122093362	122093462	13122636	0	+	0.49	(0.455,0.49]	chr12	1024773	137	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.26593	4.79676	5.32759	0.00372962	1.92345e-5	0.0302984	5.18397e-4
chr1	160292104	160292198	1328692	0	-	0.542553	(0.53,0.59]	chr1	135977	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.75615	4.79673	5.8373100000000004	2.16536e-4	2.06883e-6	0.00361336	7.35008e-5
chr3	13336852	13336918	4046403	0	-	0.545455	(0.53,0.59]	chr3	339582	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000485755.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	98	2	4.28604	4.7967200000000005	5.3074	9.59485e-6	4.01158e-9	2.93255e-4	3.51297e-7
chr17	59619865	59619953	16294805	0	+	0.704545	(0.59,1]	chr17	1321598	3	UTR5	UTR5:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	96	2	3.3027	4.79666	6.29062	2.94605e-4	3.87694e-6	0.00432147	1.37159e-4
chrX	152766898	152766991	19272357	0	-	0.505376	(0.49,0.53]	chrX	1637049	2	CDS	CDS:EXON_MRNA	MAGEA6	ENSG00000197172.10	ENST00000329342.9:ENST00000616035.4:ENST00000457643.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.62647	4.796505	5.96654	2.59929e-5	4.9393e-7	6.68294e-4	2.18407e-5
chr5	44811967	44812020	5961545	0	+	0.358491	(0.33,0.36]	chr5	467205	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1:ENST00000508129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.33896	4.79602	5.25308	0.00182033	2.94355e-5	0.0183913	6.67979e-4
chr11	14460207	14460297	12281576	0	-	0.355556	(0.33,0.36]	chr11	949578	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COPB1	ENSG00000129083.13	ENST00000525214.1:ENST00000249923.7:ENST00000439561.7:ENST00000526527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	4.12803	4.79584	5.46365	2.90032e-5	4.15679e-10	7.24986e-4	4.81804e-8
chr7	107959248	107959325	8987587	0	-	0.558442	(0.53,0.59]	chr7	687649	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	3.61856	4.79554	5.97252	0.0303021	8.30115e-7	0.129773	3.4056e-5
chrX	49552992	49553052	18694889	0	+	0.533333	(0.53,0.59]	chrX	1594947	1	CDS	CDS:EXON_MRNA:INTRON	GAGE12F:GAGE12E	ENSG00000236362.8:ENSG00000216649.4	ENST00000639028.1:ENST00000381698.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	3.61856	4.79554	5.97252	0.0303021	8.30115e-7	0.129773	3.4056e-5
chr15	78661399	78661487	15397342	0	-	0.477273	(0.455,0.49]	chr15	1217413	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	CHRNB4:RPL18P11	ENSG00000117971.12:ENSG00000213307.4	ENST00000560511.5:ENST00000494933.1	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	0	27	2	4.36307	4.795505	5.22794	0.00218641	4.80556e-5	0.0208941	9.91058e-4
chr17	42500850	42500923	16228600	0	+	0.383562	(0.36,0.39]	chr17	1312960	3	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.89918	4.7954	5.69162	1.0624e-4	2.15744e-6	0.00205241	7.62296e-5
chr6	33201744	33201828	7121276	0	+	0.571429	(0.53,0.59]	chr6	547379	1	CDS	CDS:EXON_MRNA	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	6	212	2	4.59302	4.7951	4.99718	5.10337e-10	1.55666e-10	6.34875e-8	2.00329e-8
chr18	59354518	59354580	17142590	0	-	0.290323	(0.29,0.33]	chr18	1407656	1	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	4.53055	4.79463	5.05871	2.01371e-6	1.16232e-10	7.96005e-5	1.55131e-8
chr17	7587160	7587215	16105793	0	+	0.618182	(0.59,1]	chr17	1297030	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000585188.5:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000579445.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000581380.1:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.44238	4.793955	6.14553	0.00158239	5.79142e-6	0.0167793	1.75119e-4
chr4	75644434	75644533	5472857	0	-	0.353535	(0.33,0.36]	chr4	438361	27	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	4.03706	4.7938849999999995	5.55071	5.18043e-5	4.61342e-6	0.00115752	0.00014480800000000001
chr6	27867332	27867429	7649635	0	-	0.57732000000000006	(0.53,0.59]	chr6	582822	5	CDS	CDS:EXON_MRNA	H1-5	ENSG00000184357.5	ENST00000331442.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.70393	4.793865	5.8838	1.64739e-5	1.51824e-6	4.57148e-4	5.67784e-5
chr17	67878639	67878739	16332631	0	+	0.46	(0.455,0.49]	chr17	1324936	25	INTRON	INTRON	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000335221.9:ENST00000424123.7:ENST00000544491.2	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.73589	4.7937199999999995	5.85155	2.30579e-4	9.4476e-7	0.00382267	3.80876e-5
chr17	28554319	28554407	16485699	0	-	0.488636	(0.455,0.49]	chr17	1347684	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	3.91401	4.7937	5.67339	2.05982e-6	3.58445e-7	8.10246e-5	1.659e-5
chr12	31714951	31715051	13283160	0	-	0.3	(0.29,0.33]	chr12	1041514	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AMN1	ENSG00000151743.11	ENST00000281471.11:ENST00000537562.5:ENST00000541931.5:ENST00000536761.5:ENST00000542781.5:ENST00000535408.5:ENST00000537960.5:ENST00000457428.6:ENST00000541541.5:ENST00000422146.6:ENST00000509386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.48001	4.7935300000000005	6.10705	0.00126219	6.22381e-8	0.013837	3.71811e-6
chr1	30732856	30732953	915550	0	-	0.505155	(0.49,0.53]	chr1	95861	5	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	4.15563	4.792955	5.43028	4.45839e-8	9.03974e-10	3.08459e-6	9.62406e-8
chr9	100052474	100052532	10773242	0	-	0.413793	(0.39,0.42]	chr9	815469	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.58104	4.792475	5.00391	9.12714e-5	1.0275e-6	0.00182992	4.08333e-5
chr10	103259134	103259234	11672169	0	-	0.44	(0.42,0.455]	chr10	890195	593	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000676449.1:ENST00000676428.1:ENST00000674696.1:ENST00000675326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	115	2	3.68196	4.792465	5.90297	1.87505e-5	8.15159e-12	5.08634e-4	1.45099e-9
chr1	156009440	156009539	1313063	0	-	0.50505	(0.49,0.53]	chr1	133080	5	UTR3	UTR3:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	4.41931	4.79244	5.16557	6.36135e-5	3.4941e-6	0.00136069	1.14163e-4
chr5	181222365	181222465	7008867	0	-	0.55	(0.53,0.59]	chr5	537291	4	PRIMIRNA	PRIMIRNA	MIR4638	ENSG00000264732.1	ENST00000581158.1	miRNA	primary_miRNA	miRNA	primary_miRNA	111	3523	2	4.76143	4.792425	4.82342	1e-12	1e-12	2.46312e-10	2.25522e-10
chr8	17946785	17946885	9214584	0	+	0.48	(0.455,0.49]	chr8	704006	2	SS3_PROX	SS3_PROX:INTRON	PCM1	ENSG00000078674.18	ENST00000325083.12:ENST00000518930.1:ENST00000517730.5:ENST00000518537.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	4.63051	4.7923	4.95409	6.5205e-7	5.5347e-8	3.08344e-5	3.37102e-6
chr4	79317600	79317695	5483342	0	-	0.452632	(0.42,0.455]	chr4	439506	11	UTR3	UTR3:EXON_MRNA:INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1:ENST00000286794.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	4.56888	4.79225	5.01562	1.01971e-4	1.1745e-6	0.0019861	4.57782e-5
chr14	23025932	23026010	14528758	0	-	0.371795	(0.36,0.39]	chr14	1138372	2	UTR3	UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	3.74315	4.792115	5.84108	1.37919e-6	3.0375e-7	5.23299e-5	1.62555e-5
chr1	21831462	21831562	890702	0	-	0.6	(0.59,1]	chr1	92250	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	5	307	2	4.47965	4.791855	5.10406	4.39037e-8	3.066e-9	3.03954e-6	2.79214e-7
chr11	90283223	90283318	12059331	0	+	0.515789	(0.49,0.53]	chr11	929980	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	96	2	3.96757	4.791795	5.61602	6.21316e-5	1.54742e-10	0.00134149	1.99213e-8
chr2	239988798	239988891	3245652	0	-	0.494624	(0.49,0.53]	chr2	286026	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	4.30878	4.7917749999999995	5.27477	4.14521e-5	7.12421e-6	8.8376e-4	2.28404e-4
chr1	110899649	110899740	405640	0	+	0.384615	(0.36,0.39]	chr1	39842	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	128	2	4.53381	4.791695	5.04958	1.20461e-9	1.17017e-10	1.23899e-7	1.7261e-8
chr5	139614913	139614966	6250446	0	+	0.377358	(0.36,0.39]	chr5	487099	2	CDS	CDS:EXON_MRNA	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	129	2	4.4734	4.791645	5.10989	2.00566e-9	8.53916e-11	2.10095e-7	1.18314e-8
chr6	24785899	24785999	7095343	0	+	0.3	(0.29,0.33]	chr6	542235	2	UTR3	UTR3:EXON_MRNA	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000620958.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.45534	4.7915849999999995	5.12783	0.00110984	5.31593e-5	0.0127344	0.00108035
chr12	51240918	51241018	12876209	0	+	0.53	(0.49,0.53]	chr12	1000606	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000552173.5:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	142	2	4.14036	4.79119	5.44202	8.35094e-9	6.71743e-10	6.6412e-7	8.07767e-8
chr11	34452141	34452207	11906136	0	+	0.439394	(0.42,0.455]	chr11	909781	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	3.8515	4.79093	5.73036	0.0119089	2.37045e-6	0.0686664	8.28831e-5
chr8	128041560	128041658	9615222	0	+	0.418367	(0.39,0.42]	chr8	728683	13	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.1206	4.790725	5.46085	0.00597537	5.81708e-6	0.0428562	1.921e-4
chr2	195680524	195680619	2290370	0	+	0.378947	(0.36,0.39]	chr2	207584	5	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	4.56388	4.7902249999999995	5.01657	1.11774e-6	2.48224e-8	4.4003e-5	1.84654e-6
chr19	10316593	10316688	17459295	0	-	0.652632	(0.59,1]	chr19	1460720	5	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.93526	4.790205	5.64515	1.599e-4	1.07144e-4	0.00263454	0.00206452
chr14	64442332	64442402	14344062	0	+	0.685714	(0.59,1]	chr14	1121355	2	CDS	CDS:EXON_MRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000556771.5:ENST00000553405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.54183	4.7900849999999995	5.03834	0.0070583	0.00108238	0.0478044	0.0118355
chr16	2253505	2253603	15825200	0	-	0.622449	(0.59,1]	chr16	1262340	5	UTR3	UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.54183	4.7900849999999995	5.03834	0.0070583	0.00108238	0.0478044	0.0118355
chr19	2340918	2341018	17196715	0	+	0.65	(0.59,1]	chr19	1412919	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	LLfos-48D6.2:SPPL2B	ENSG00000273734.1:ENSG00000005206.17	ENST00000621615.1:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000622308.4:ENST00000612623.1:ENST00000614784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.54183	4.7900849999999995	5.03834	0.0070583	0.00108238	0.0478044	0.0118355
chr19	40369907	40369956	17328647	0	+	0.673469	(0.59,1]	chr19	1435559	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	PLD3:MIR6796	ENSG00000105223.20:ENSG00000275652.1	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000409281.5:ENST00000359274.5:ENST00000492243.1:ENST00000599353.1:ENST00000617519.1:ENST00000480030.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	0	36	2	4.54183	4.7900849999999995	5.03834	0.0070583	0.00108238	0.0478044	0.0118355
chr21	44851466	44851523	18277426	0	-	0.666667	(0.59,1]	chr21	1550250	1	CDS	CDS:UTR3:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54183	4.7900849999999995	5.03834	0.0070583	0.00108238	0.0478044	0.0118355
chr12	46188673	46188772	13313435	0	-	0.282828	[0,0.29]	chr12	1043464	58	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.94136	4.789915	5.63847	7.11071e-6	1.9181e-6	2.28404e-4	6.93031e-5
chr18	39335672	39335770	17084569	0	-	0.479592	(0.455,0.49]	chr18	1403467	1	INTRON	INTRON	MIR924HG	ENSG00000267374.2	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000664913.1:ENST00000591469.1:ENST00000654837.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000667701.1:ENST00000652839.1:ENST00000663244.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000666091.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1	lncRNA	lncRNA	lncRNA	lncRNA	2	77	2	2.52734	4.789805	7.05227	0.00792433	3.71021e-11	0.0523592	5.63774e-9
chr1	194190441	194190541	640486	0	+	0.35	(0.33,0.36]	chr1	64401	2	INTRON	INTRON	RP11-563D10.1	ENSG00000227240.2	ENST00000656143.1:ENST00000655677.1:ENST00000454538.1	lncRNA	lncRNA	lncRNA	lncRNA	3	95	2	4.44353	4.7896350000000005	5.13574	3.20943e-6	5.71715e-11	1.17669e-4	8.27296e-9
chr7	56074165	56074218	8290673	0	+	0.509434	(0.49,0.53]	chr7	631542	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000498777.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000529457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	3.23855	4.7896	6.34065	5.12488e-5	1.98867e-8	0.00104999	1.52826e-6
chr11	17077667	17077715	12295060	0	-	0.604167	(0.59,1]	chr11	950313	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000526895.5:ENST00000525828.1:ENST00000534329.1:ENST00000528074.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	1	76	2	3.34171	4.78857	6.23543	0.00234977	3.47367e-6	0.0222173	1.13687e-4
chr11	62639071	62639094	12409857	0	-	0.478261	(0.455,0.49]	chr11	961314	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1:ENST00000524437.5:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	4.32883	4.788035	5.24724	3.09759e-5	6.31002e-6	7.62166e-4	1.88287e-4
chr3	185494622	185494691	4625851	0	-	0.478261	(0.455,0.49]	chr3	382047	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3:ENST00000467061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	4.32883	4.788035	5.24724	3.09759e-5	6.31002e-6	7.62166e-4	1.88287e-4
chr3	133588199	133588275	3750848	0	+	0.355263	(0.33,0.36]	chr3	321179	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.83586	4.78768	5.7395	1.7178e-4	1.26833e-6	0.00302124	4.89488e-5
chr10	97430954	97431044	11212373	0	+	0.511111	(0.49,0.53]	chr10	852973	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.51981	4.787575	6.05534	6.88328e-4	2.57847e-7	0.00876781	1.25763e-5
chr10	69300624	69300720	11559426	0	-	0.40625	(0.39,0.42]	chr10	879416	3	EXON_PSEUDO	EXON_PSEUDO	RPS15AP28	ENSG00000229197.1	ENST00000435088.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	4.3313	4.787495	5.24369	0.00209984	4.15285e-5	0.0204266	8.8376e-4
chr12	55725480	55725560	13347066	0	-	0.45	(0.42,0.455]	chr12	1050326	3	UTR3	UTR3:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000548117.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000555199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	4.67981	4.787345	4.89488	5.38444e-4	9.35766e-8	0.00744072	5.27504e-6
chr5	138924533	138924621	6247992	0	+	0.579545	(0.53,0.59]	chr5	486818	1	CDS	CDS:UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000521368.5:ENST00000521387.1:ENST00000519489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.69065	4.787225	5.8838	3.04331e-4	1.51824e-6	0.00472028	5.67784e-5
chr6	35892714	35892811	7678530	0	-	0.298969	(0.29,0.33]	chr6	588619	13	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.2566	4.7871749999999995	5.31775	0.00303129	1.06766e-5	0.0257942	3.17854e-4
chr1	1564822	1564916	828096	0	-	0.510638	(0.49,0.53]	chr1	82535	3	CDS	CDS:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	4.32769	4.78674	5.24579	4.073e-5	6.54988e-6	9.64741e-4	1.94116e-4
chr4	121668380	121668467	5625877	0	-	0.586207	(0.53,0.59]	chr4	448423	6	UTR3	UTR3:EXON_MRNA	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000509648.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.30776	4.786335	5.26491	0.00407289	6.31437e-5	0.0324137	0.00124286
chr1	54043422	54043522	1027295	0	-	0.47	(0.455,0.49]	chr1	106628	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding	4	129	2	4.77449	4.786325	4.79816	1.71652e-7	1.27296e-10	1.00318e-5	1.68067e-8
chr19	3605439	3605537	17427985	0	-	0.459184	(0.455,0.49]	chr19	1454174	44	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.41041	4.78628	5.16215	0.00218771	5.04348e-5	0.0202707	0.00113788
chr15	34095954	34096014	15202899	0	-	0.4	(0.39,0.42]	chr15	1196604	2	CDS	CDS:EXON_MRNA:INTRON	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.49324	4.785880000000001	5.07852	0.00108192	1.02164e-4	0.0124943	0.00183311
chr7	103098924	103099016	8440952	0	+	0.413043	(0.39,0.42]	chr7	644980	5	UTR3	UTR3:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323716.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.49324	4.785880000000001	5.07852	0.00108192	1.02164e-4	0.0124943	0.00183311
chr7	152364871	152364971	9137264	0	-	0.4	(0.39,0.42]	chr7	698600	58	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.49324	4.785880000000001	5.07852	0.00108192	1.02164e-4	0.0124943	0.00183311
chr1	156547372	156547472	1315819	0	-	0.5	(0.49,0.53]	chr1	133726	25	INTRON	INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.96757	4.785795	5.60402	6.21316e-5	5.78803e-6	0.00134149	1.75119e-4
chr3	41236563	41236642	3432592	0	+	0.455696	(0.455,0.49]	chr3	298562	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000465552.2:ENST00000482042.1:ENST00000471014.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	4.59599	4.78562	4.97525	1.38474e-4	9.38471e-7	0.00254294	3.79261e-5
chr22	38742470	38742555	18511635	0	-	0.564706	(0.53,0.59]	chr22	1580337	3	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000469086.5:ENST00000464202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.93648	4.78561	5.63474	8.06385e-5	7.53339e-6	0.00167444	2.17987e-4
chr6	170535319	170535405	8091001	0	-	0.476744	(0.455,0.49]	chr6	618022	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	149	2	4.5037	4.785475	5.06725	1.8539e-9	1.18521e-10	1.80971e-7	1.74617e-8
chr11	78112708	78112770	12477843	0	-	0.483871	(0.455,0.49]	chr11	970732	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.50805	4.785435	5.06282	0.00122223	1.16789e-4	0.0135383	0.0020505
chr5	43143361	43143437	6560112	0	-	0.473684	(0.455,0.49]	chr5	508329	1	EXON_PSEUDO	EXON_PSEUDO	RP11-447H19.4	ENSG00000278487.1	ENST00000614905.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	4.50805	4.785435	5.06282	0.00122223	1.16789e-4	0.0135383	0.0020505
chr6	26234211	26234267	7647244	0	-	0.482143	(0.455,0.49]	chr6	582561	1	UTR3	UTR3:EXON_MRNA	H1-3	ENSG00000124575.7	ENST00000244534.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.50805	4.785435	5.06282	0.00122223	1.16789e-4	0.0135383	0.0020505
chr4	3518930	3518991	5285711	0	-	0.590164	(0.59,1]	chr4	425818	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.34487	4.78518	5.22549	0.0123678	5.13843e-4	0.0705839	0.00665221
chr6	30894588	30894671	7112954	0	+	0.686747	(0.59,1]	chr6	545192	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDR1	ENSG00000204580.14	ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000376568.8:ENST00000452441.5:ENST00000482873.6:ENST00000508312.5:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000417521.5:ENST00000465966.4:ENST00000513514.2:ENST00000514434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.34487	4.78518	5.22549	0.0123678	5.13843e-4	0.0705839	0.00665221
chr10	74371828	74371926	11119896	0	+	0.55102	(0.53,0.59]	chr10	846360	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADK:RPSAP6	ENSG00000156110.15:ENSG00000214629.3	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1:ENST00000417882.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	54	2	3.47419	4.785159999999999	6.09613	8.75273e-4	3.47717e-7	0.0106963	1.62117e-5
chr22	21922397	21922496	18443474	0	-	0.575758	(0.53,0.59]	chr22	1572559	31	UTR3	UTR3:EXON_MRNA	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.47419	4.785159999999999	6.09613	8.75273e-4	3.47717e-7	0.0106963	1.62117e-5
chr2	97756811	97756907	2795052	0	-	0.416667	(0.39,0.42]	chr2	249773	6	UTR3	UTR3:EXON_MRNA	TMEM131	ENSG00000075568.17	ENST00000485245.2:ENST00000186436.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.67765	4.784915	4.89218	7.04737e-4	1.6518e-4	0.00848325	0.0029267300000000002
chr2	187478675	187478775	3070290	0	-	0.4	(0.39,0.42]	chr2	271840	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.67765	4.784915	4.89218	7.04737e-4	1.6518e-4	0.00848325	0.0029267300000000002
chr6	26188920	26188976	7647181	0	-	0.625	(0.59,1]	chr6	582536	2	CDS	CDS:EXON_MRNA	H4C4	ENSG00000277157.2	ENST00000614247.2	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.2224	4.784795	6.34719	4.73062e-4	1.80806e-6	0.00668763	6.57974e-5
chr22	41675054	41675154	18520237	0	-	0.59	(0.53,0.59]	chr22	1581353	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000488571.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	3.11779	4.78451	6.45123	5.11883e-4	2.24134e-8	0.00664583	1.68827e-6
chr22	19068095	19068160	18430360	0	-	0.630769	(0.59,1]	chr22	1570396	1	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.36223	4.7841249999999995	6.20602	0.00203572	6.20993e-6	0.0192213	2.03021e-4
chr1	11952678	11952735	45261	0	+	0.526316	(0.49,0.53]	chr1	5731	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	4.5773	4.78382	4.99034	1.6002e-4	1.76236e-8	0.00286408	1.26618e-6
chr15	78549142	78549241	15040598	0	+	0.292929	(0.29,0.33]	chr15	1183235	3	UTR3	UTR3:EXON_MRNA	PSMA4	ENSG00000041357.16	ENST00000559082.5:ENST00000413382.6:ENST00000044462.12:ENST00000560099.5:ENST00000558341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.63974	4.78373	4.92772	4.81181e-4	1.56621e-4	0.00677016	0.00259991
chr3	81509475	81509569	3580030	0	+	0.308511	(0.29,0.33]	chr3	309682	1	EXON_SMALL	EXON_SMALL	RNU2-28P	ENSG00000222389.1	ENST00000410457.1	snRNA	snRNA	snRNA	snRNA	0	21	2	4.63974	4.78373	4.92772	4.81181e-4	1.56621e-4	0.00677016	0.00259991
chr9	94038544	94038644	10365007	0	+	0.31	(0.29,0.33]	chr9	780364	3	INTRON	INTRON	PTPDC1	ENSG00000158079.16	ENST00000375360.7:ENST00000650567.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.63974	4.78373	4.92772	4.81181e-4	1.56621e-4	0.00677016	0.00259991
chr9	73158694	73158748	10304665	0	+	0.555556	(0.53,0.59]	chr9	776015	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5:ENST00000376911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	119	2	4.54698	4.7837250000000004	5.02047	4.49833e-8	2.8511e-8	2.80849e-6	2.08807e-6
chr11	62789947	62790047	11974118	0	+	0.59	(0.53,0.59]	chr11	917988	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:PRIMIRNA	TMEM179B:MIR6748	ENSG00000185475.11:ENSG00000284535.1	ENST00000333449.9:ENST00000533861.5:ENST00000532586.1:ENST00000532345.1:ENST00000610433.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	55	2	3.39416	4.78359	6.17302	0.00126006	1.98983e-7	0.013837	1.01095e-5
chr15	89116427	89116521	15092642	0	+	0.574468	(0.53,0.59]	chr15	1187043	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	4.04528	4.78348	5.52168	4.28524e-5	1.48967e-5	9.98851e-4	3.81697e-4
chrX	119470049	119470147	18841518	0	+	0.489796	(0.455,0.49]	chrX	1605559	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9:ENST00000460013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	186	2	4.26239	4.7834	5.30441	3.89539e-10	1.42449e-11	5.03491e-8	2.39048e-9
chr5	139478357	139478445	6867233	0	-	0.534091	(0.53,0.59]	chr5	525700	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000652293.1:ENST00000651565.1:ENST00000652640.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000502825.1:ENST00000515507.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.92573	4.78323	5.64073	8.62301e-5	7.00135e-6	0.00160749	2.25852e-4
chr5	180575388	180575487	6416547	0	+	0.333333	(0.33,0.36]	chr5	499475	13	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	4.59457	4.783065000000001	4.97156	8.56859e-7	4.09248e-8	3.50542e-5	2.87331e-6
chr19	46775509	46775609	17595460	0	-	0.6	(0.59,1]	chr19	1481383	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	10	730	2	3.74273	4.78299	5.82325	6.59678e-7	1e-12	3.11106e-5	2.25522e-10
chr2	101308308	101308398	2814462	0	-	0.777778	(0.59,1]	chr2	251298	3	CDS	CDS:EXON_MRNA	RNF149	ENSG00000163162.9	ENST00000424632.5:ENST00000295317.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	95	2	3.51277	4.782865	6.05296	1.00384e-4	1.41714e-5	0.00180872	4.01358e-4
chr15	57286355	57286455	14950138	0	+	0.46	(0.455,0.49]	chr15	1174949	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000557843.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1:ENST00000561454.1:ENST00000560191.1:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	3.24286	4.7827	6.32254	2.77105e-4	2.62373e-8	0.00444204	1.77777e-6
chr6	7891678	7891736	7588077	0	-	0.568965	(0.53,0.59]	chr6	578883	2	CDS	CDS:UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000439343.2:ENST00000473453.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.55001	4.78246	6.01491	6.11776e-4	6.18274e-7	0.00818575	2.65059e-5
chr10	26834554	26834653	11421535	0	-	0.373737	(0.36,0.39]	chr10	870585	109	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.73346	4.78199	4.83052	3.2963e-4	3.15227e-4	0.00504024	0.00452711
chr2	231163634	231163727	2424126	0	+	0.387097	(0.36,0.39]	chr2	218388	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000678261.1:ENST00000467792.1:ENST00000477120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.73346	4.78199	4.83052	3.2963e-4	3.15227e-4	0.00504024	0.00452711
chr6	129577916	129578015	7955639	0	-	0.363636	(0.36,0.39]	chr6	608194	19	UTR3	UTR3:EXON_MRNA	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.73346	4.78199	4.83052	3.2963e-4	3.15227e-4	0.00504024	0.00452711
chr5	654177	654274	5850977	0	+	0.536082	(0.53,0.59]	chr5	459950	6	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	35	2	3.81839	4.781985000000001	5.74558	0.0184435	3.61407e-6	0.0945306	1.29307e-4
chr11	9286454	9286521	12265164	0	-	0.283582	[0,0.29]	chr11	948400	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	126	2	4.75909	4.781945	4.8048	3.09102e-9	8.41549e-12	3.05696e-7	1.49188e-9
chr2	63597406	63597506	1850040	0	+	0.47	(0.455,0.49]	chr2	175417	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000436321.5:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	3.81698	4.78177	5.74656	7.1534e-6	1.95355e-6	2.29129e-4	7.00948e-5
chr3	9952221	9952321	4031160	0	-	0.8	(0.59,1]	chr3	338373	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRRT3	ENSG00000163704.12	ENST00000412055.6:ENST00000295984.7:ENST00000411976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	406	2	2.45126	4.781705	7.11215	0.00209267	1e-12	0.0204266	2.25522e-10
chr17	77216450	77216548	16362233	0	+	0.540816	(0.53,0.59]	chr17	1329013	26	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.15805	4.78151	5.40497	0.00680952	2.83308e-5	0.0468196	7.12614e-4
chr17	48058581	48058677	16253361	0	+	0.552083	(0.53,0.59]	chr17	1317132	4	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.16383	4.781415	5.399	0.00659193	3.02387e-5	0.0454205	6.78876e-4
chr3	195784745	195784845	4661114	0	-	0.59	(0.53,0.59]	chr3	385270	61	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.16383	4.781415	5.399	0.00659193	3.02387e-5	0.0454205	6.78876e-4
chr4	44381791	44381891	5400890	0	-	0.56	(0.53,0.59]	chr4	432531	876	INTRON	INTRON	KCTD8	ENSG00000183783.7	ENST00000360029.4:ENST00000515268.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.16383	4.781415	5.399	0.00659193	3.02387e-5	0.0454205	6.78876e-4
chr3	100365369	100365466	4325503	0	-	0.412371	(0.39,0.42]	chr3	360552	21	UTR3	UTR3:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	4.72907	4.781325000000001	4.83358	1.20779e-7	4.00419e-9	7.40241e-6	3.51297e-7
chr3	139374488	139374588	4479647	0	-	0.43	(0.42,0.455]	chr3	372260	1	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.91097	4.78118	5.65139	8.75299e-5	2.06893e-6	0.0016272	8.11386e-5
chr22	41646988	41647082	18381541	0	+	0.478723	(0.455,0.49]	chr22	1564699	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	4.01559	4.780215	5.54484	4.89523e-6	1.68211e-6	1.67428e-4	6.18007e-5
chr17	44352875	44352952	16234943	0	+	0.571429	(0.53,0.59]	chr17	1314590	2	UTR3	UTR3:EXON_MRNA	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.36133	4.78008	5.19883	8.7034e-5	5.91026e-6	0.00177086	1.77972e-4
chr3	52525208	52525295	4183374	0	-	0.574713	(0.53,0.59]	chr3	352885	1	CDS	CDS:UTR3:EXON_MRNA	NT5DC2	ENSG00000168268.11	ENST00000463947.5:ENST00000307076.8:ENST00000422318.7:ENST00000479024.5:ENST00000462261.5:ENST00000492555.5:ENST00000459839.5:ENST00000466112.5:ENST00000478091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	4.36133	4.78008	5.19883	8.7034e-5	5.91026e-6	0.00177086	1.77972e-4
chr5	77785628	77785722	6050221	0	+	0.574468	(0.53,0.59]	chr5	474661	9	EXON_PSEUDO	EXON_PSEUDO	ACTBP2	ENSG00000213763.4	ENST00000515712.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	53	2	4.36133	4.78008	5.19883	8.7034e-5	5.91026e-6	0.00177086	1.77972e-4
chr17	41866916	41867015	16543737	0	-	0.373737	(0.36,0.39]	chr17	1356443	1	UTR3	UTR3:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.2928	4.78002	6.26724	2.65442e-4	2.79819e-8	0.004287	1.8758e-6
chr2	669756	669850	2475276	0	-	0.404255	(0.39,0.42]	chr2	224162	1	CDS	CDS:UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8:ENST00000432667.5:ENST00000355654.6:ENST00000497508.1:ENST00000477202.1:ENST00000405941.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.77106	4.779920000000001	4.78878	4.27222e-4	3.03764e-4	0.00577513	0.00472028
chr17	59679396	59679457	16295431	0	+	0.442623	(0.42,0.455]	chr17	1321709	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	4	146	2	4.06324	4.779775000000001	5.49631	1.14038e-6	2.02915e-12	4.91686e-5	4.24422e-10
chr7	155301627	155301690	8632583	0	+	0.507937	(0.49,0.53]	chr7	659269	2	CDS	CDS:EXON_MRNA:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1:ENST00000468307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	176	2	3.00771	4.77967	6.55163	6.70462e-5	1e-12	0.00142579	2.25522e-10
chr19	35383868	35383960	17304925	0	+	0.467391	(0.455,0.49]	chr19	1430943	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P7	ENSG00000268222.1	ENST00000596811.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	3.81275	4.779655	5.74656	0.0138827	1.95355e-6	0.0760883	7.00948e-5
chrX	135973675	135973763	19248674	0	-	0.647727	(0.59,1]	chrX	1635162	1	UTR5	UTR5:EXON_MRNA	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000681201.1:ENST00000679621.1:ENST00000680510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.11672	4.77954	5.44236	0.0222273	2.02004e-4	0.105595	0.00317801
chr6	33202071	33202125	7121281	0	+	0.555556	(0.53,0.59]	chr6	547383	1	CDS	CDS:EXON_MRNA	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	4	199	2	3.70393	4.779225	5.85452	1.64739e-5	1e-12	4.57148e-4	2.25522e-10
chr12	16991328	16991423	12756774	0	+	0.515789	(0.49,0.53]	chr12	991478	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P16	ENSG00000213235.3	ENST00000325349.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.28332	4.779045	5.27477	0.00338762	4.14521e-5	0.0288632	8.8376e-4
chr1	21873924	21874011	891197	0	-	0.632184	(0.59,1]	chr1	92500	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000427897.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	101	2	2.89783	4.779	6.66017	0.00198798	2.62838e-7	0.0195488	1.27591e-5
chr11	124649707	124649796	12639844	0	-	0.449438	(0.42,0.455]	chr11	981101	2	CDS	CDS:EXON_MRNA	SIAE	ENSG00000110013.13	ENST00000263593.8:ENST00000545756.5:ENST00000618733.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.75728	4.77896	4.80064	5.3817e-4	3.0479e-4	0.00686676	0.00472028
chr1	203743196	203743294	669915	0	+	0.479592	(0.455,0.49]	chr1	67517	35	UTR3	UTR3:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.56037	4.778175	5.99598	5.72551e-4	3.33072e-7	0.0078026	1.56608e-5
chr16	28098537	28098637	15903493	0	-	0.59	(0.53,0.59]	chr16	1273214	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000568065.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.43279	4.7779	5.12301	0.0026472	1.2852e-4	0.0231864	0.00241206
chr12	53413008	53413106	12886198	0	+	0.367347	(0.36,0.39]	chr12	1002329	19	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	4.62142	4.777785	4.93415	7.26179e-7	5.04486e-10	3.39859e-5	5.72564e-8
chr3	196348850	196348950	4664953	0	-	0.41	(0.39,0.42]	chr3	385869	13	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	10	263	2	4.74143	4.777725	4.81402	5.07894e-11	1e-12	8.16041e-9	2.25522e-10
chr14	100734518	100734610	14489606	0	+	0.695652	(0.59,1]	chr14	1132123	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	7	437	2	4.45102	4.777565	5.10411	5.37643e-8	4.77538e-11	3.61905e-6	7.04458e-9
chr1	10420034	10420130	39918	0	+	0.46875	(0.455,0.49]	chr1	4839	4	UTR3	UTR3:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000270776.13	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.55829	4.777135	5.99598	4.15156e-5	3.33072e-7	9.7509e-4	1.56608e-5
chr3	36767210	36767305	4116597	0	-	0.442105	(0.42,0.455]	chr3	344104	2	EXON_PSEUDO	EXON_PSEUDO	HSPD1P6	ENSG00000230067.3	ENST00000388967.3	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	1	43	2	3.87922	4.7770399999999995	5.67486	1.04705e-4	3.42598e-6	0.0020295	1.12506e-4
chr7	159075458	159075558	9160793	0	-	0.43	(0.42,0.455]	chr7	699877	165	INTRON	INTRON	VIPR2	ENSG00000106018.14	ENST00000262178.7:ENST00000377633.7:ENST00000402066.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.05954	4.77691	5.49428	0.00617886	1.07978e-5	0.0439741	2.9314e-4
chr9	12972842	12972941	10572347	0	-	0.444444	(0.42,0.455]	chr9	800168	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187K14.1:PRDX1P1	ENSG00000285637.2:ENSG00000214121.4	ENST00000649120.1:ENST00000449329.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	29	2	4.05954	4.77691	5.49428	0.00617886	1.07978e-5	0.0439741	2.9314e-4
chr9	36211965	36212061	10249967	0	+	0.4375	(0.42,0.455]	chr9	771380	3	UTR3	UTR3:EXON_MRNA:INTRON	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.05954	4.77691	5.49428	0.00617886	1.07978e-5	0.0439741	2.9314e-4
chr8	47864624	47864693	9816433	0	-	0.565217	(0.53,0.59]	chr8	742710	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000546304.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	4.08599	4.7768049999999995	5.46762	3.38473e-5	1.97761e-5	7.45971e-4	5.29643e-4
chr8	30069825	30069899	9780522	0	-	0.459459	(0.455,0.49]	chr8	739521	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	78	2	2.61558	4.77664	6.9377	0.00184897	1.12217e-10	0.0185736	1.5006e-8
chr20	4024268	4024356	17659668	0	+	0.5	(0.49,0.53]	chr20	1493147	5	EXON_PSEUDO	EXON_PSEUDO	FTLP3	ENSG00000226608.3	ENST00000427242.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	115	2	3.51981	4.776635	6.03346	6.88328e-4	2.29616e-12	0.00876781	4.72898e-10
chr19	11116093	11116152	17230139	0	+	0.542373	(0.53,0.59]	chr19	1419595	1	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	136	2	4.37211	4.7765699999999995	5.18103	5.43864e-6	9.17578e-11	1.81467e-4	1.26183e-8
chr9	91905181	91905281	10734852	0	-	0.39	(0.36,0.39]	chr9	812027	181	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	4.77048	4.77651	4.78254	2.24861e-7	1.93842e-7	1.11991e-5	1.10775e-5
chr11	6613656	6613754	12249912	0	-	0.397959	(0.39,0.42]	chr11	946834	10	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	7	186	2	3.76171	4.776045	5.79038	5.5407e-8	1e-12	3.70656e-6	2.25522e-10
chr15	74414546	74414645	15374474	0	-	0.525253	(0.49,0.53]	chr15	1215165	1	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.22986	4.775825	5.32179	2.63311e-5	1.25249e-5	6.73425e-4	3.30689e-4
chr3	128060109	128060209	3725084	0	+	0.47	(0.455,0.49]	chr3	318477	1	CDS_START	CDS_START:CDS:EXON_MRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000481210.5:ENST00000243253.8:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	4.4906	4.77563	5.06066	1.87629e-6	1.71543e-10	7.52075e-5	2.18743e-8
chr16	87404383	87404482	15801170	0	+	0.444444	(0.42,0.455]	chr16	1257525	14	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	3.96541	4.775525	5.58564	3.24669e-6	2.38634e-7	1.18495e-4	1.17692e-5
chr8	140520554	140520654	10132048	0	-	0.51	(0.49,0.53]	chr8	760954	5	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.83319	4.7752	5.71721	1.34601e-4	2.77472e-6	0.00249552	9.47025e-5
chr11	3827562	3827662	12238982	0	-	0.62	(0.59,1]	chr11	945692	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1:ENST00000396978.1:ENST00000533217.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.44671	4.775085000000001	5.10346	0.00931497	8.40506e-4	0.0586162	0.00981548
chr17	32350108	32350202	16200428	0	+	0.659574	(0.59,1]	chr17	1308124	1	EXON_SMALL	EXON_SMALL:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	RP11-227G15.3:MIR632:ZNF207	ENSG00000265794.5:ENSG00000283774.1:ENSG00000010244.19	ENST00000581915.5:ENST00000578389.1:ENST00000385193.1:ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	miRNA	miRNA	miRNA:protein_coding:lncRNA	miRNA:protein_coding:retained_intron:lncRNA:primary_miRNA	0	36	2	4.44671	4.775085000000001	5.10346	0.00931497	8.40506e-4	0.0586162	0.00981548
chr6	26124525	26124625	7101134	0	+	0.6	(0.59,1]	chr6	542794	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000377791.4:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	485	2	4.58881	4.775	4.96119	2.01111e-8	4.40403e-11	1.54379e-6	6.56058e-9
chr21	37513625	37513724	18117414	0	+	0.40404	(0.39,0.42]	chr21	1536308	12	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.44923	4.77499	6.10075	0.00105208	1.37224e-7	0.0123035	7.34618e-6
chrX	153982259	153982357	18916471	0	+	0.714286	(0.59,1]	chrX	1611536	2	CDS	CDS:EXON_MRNA	TMEM187	ENSG00000177854.8	ENST00000369982.5:ENST00000425274.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.47517	4.774850000000001	5.07453	0.00735659	0.00117617	0.0491503	0.0132131
chr20	4024180	4024268	17659667	0	+	0.545455	(0.53,0.59]	chr20	1493147	4	EXON_PSEUDO	EXON_PSEUDO	FTLP3	ENSG00000226608.3	ENST00000427242.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	78	2	2.72478	4.77471	6.82464	0.00324675	1.06121e-9	0.0282494	1.10387e-7
chr19	1037800	1037900	17190843	0	+	0.69	(0.59,1]	chr19	1411407	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000568865.3:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	108	2	2.63214	4.774675	6.91721	0.005622	4.85635e-8	0.0421873	3.00194e-6
chr20	31554745	31554829	17748663	0	+	0.52381	(0.49,0.53]	chr20	1497876	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000464661.5:ENST00000460389.5:ENST00000494153.5:ENST00000483310.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	127	2	4.50328	4.77464	5.046	2.43728e-8	2.0285e-9	1.81945e-6	1.95823e-7
chr21	31667257	31667316	18093477	0	+	0.508475	(0.49,0.53]	chr21	1533896	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	4.25722	4.774455	5.29169	1.00699e-5	3.21894e-9	3.03291e-4	2.90715e-7
chr2	175178387	175178402	3028024	0	-	0.466667	(0.455,0.49]	chr2	268124	1	CDS	CDS:EXON_MRNA	ATP5MC3	ENSG00000154518.10	ENST00000284727.9:ENST00000409194.5:ENST00000392541.3:ENST00000497075.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	75	2	4.63607	4.774155	4.91224	6.94376e-7	6.63701e-8	2.92826e-5	4.34166e-6
chr1	154946329	154946423	1305916	0	-	0.670213	(0.59,1]	chr1	131551	9	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.74084	4.773965	5.80709	4.03818e-4	4.94887e-5	0.00550292	0.00112479
chr1	25408682	25408775	904261	0	-	0.591398	(0.59,1]	chr1	94045	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1:ENST00000495048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.56566	4.77383	5.982	8.52606e-5	1.42041e-5	0.00174886	3.66887e-4
chr13	99536607	99536672	13865379	0	+	0.415385	(0.39,0.42]	chr13	1087164	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	4.77106	4.77371	4.77636	3.03764e-4	2.28159e-7	0.00472028	1.13101e-5
chr2	70234885	70234983	2724139	0	-	0.316327	(0.29,0.33]	chr2	242705	37	INTRON	INTRON	C2orf42:TIA1	ENSG00000115998.8:ENSG00000116001.17	ENST00000470096.1:ENST00000415783.6:ENST00000433529.7:ENST00000282574.8:ENST00000445587.5:ENST00000416149.6:ENST00000474809.6:ENST00000477044.6:ENST00000361692.4:ENST00000496452.5:ENST00000481650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.24387	4.773705	5.30354	0.00263476	1.89876e-5	0.0239118	4.64808e-4
chrX	155942139	155942234	18924231	0	+	0.326316	(0.29,0.33]	chrX	1612670	1	UTR3	UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.24387	4.773705	5.30354	0.00263476	1.89876e-5	0.0239118	4.64808e-4
chr7	124481298	124481395	8507797	0	+	0.556701	(0.53,0.59]	chr7	649204	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP5-921G16.1:RP5-1106E3.1	ENSG00000242593.7:ENSG00000213296.4	ENST00000652254.1:ENST00000393351.3	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	38	2	3.61856	4.7737	5.92884	0.0303021	1.11987e-6	0.129773	4.4003e-5
chr11	82849133	82849218	12499345	0	-	0.470588	(0.455,0.49]	chr11	971446	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	4.67507	4.773465	4.87186	2.33781e-4	5.16001e-7	0.00385436	2.27446e-5
chr6	158313337	158313434	7519118	0	+	0.381443	(0.36,0.39]	chr6	573827	10	UTR5	UTR5:EXON_MRNA:INTRON	RP11-732M18.4:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	40	2	4.15583	4.77344	5.39105	1.9188e-5	7.73826e-6	4.68725e-4	2.43421e-4
chr9	99985017	99985069	10772556	0	-	0.346154	(0.33,0.36]	chr9	815425	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	5	113	2	4.391	4.773405	5.15581	7.30035e-9	5.34331e-10	6.48319e-7	6.02407e-8
chr1	100990548	100990631	1200504	0	-	0.518072	(0.49,0.53]	chr1	117250	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DPH5	ENSG00000117543.21	ENST00000370109.8:ENST00000370105.7:ENST00000488789.5:ENST00000492067.5:ENST00000427040.2:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.4279	4.77329	5.11868	0.00196987	9.66505e-5	0.0193972	0.00175267
chr19	58547791	58547848	17413323	0	+	0.526316	(0.49,0.53]	chr19	1451192	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000594806.5:ENST00000341753.10:ENST00000597618.5:ENST00000597423.1:ENST00000597172.5:ENST00000601150.5:ENST00000597995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.4279	4.77329	5.11868	0.00196987	9.66505e-5	0.0193972	0.00175267
chr3	110682864	110682960	4350172	0	-	0.510417	(0.49,0.53]	chr3	362849	7	EXON_PSEUDO	EXON_PSEUDO	RPSAP29	ENSG00000244722.1	ENST00000483479.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.4279	4.77329	5.11868	0.00196987	9.66505e-5	0.0193972	0.00175267
chr3	127621962	127622057	3723618	0	+	0.526316	(0.49,0.53]	chr3	318305	3	UTR3	UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000265056.12:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.4279	4.77329	5.11868	0.00196987	9.66505e-5	0.0193972	0.00175267
chr8	96295204	96295256	9498876	0	+	0.519231	(0.49,0.53]	chr8	722455	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000518776.1:ENST00000522072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.4279	4.77329	5.11868	0.00196987	9.66505e-5	0.0193972	0.00175267
chr13	99517613	99517681	13865185	0	+	0.382353	(0.36,0.39]	chr13	1087142	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.58637	4.77309	5.95981	5.84377e-4	3.15714e-7	0.00793559	1.49311e-5
chr20	50569471	50569570	17816070	0	+	0.515152	(0.49,0.53]	chr20	1507122	6	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.94177	4.772895	5.60402	0.0104929	5.78803e-6	0.063428	1.75119e-4
chr10	32188322	32188421	11442263	0	-	0.484848	(0.455,0.49]	chr10	872504	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP31	ENSG00000217094.2	ENST00000405422.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	44	2	3.87233	4.77286	5.67339	1.08465e-4	2.05982e-6	0.00193256	8.10246e-5
chr1	52087648	52087747	192287	0	+	0.383838	(0.36,0.39]	chr1	24661	10	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.42503	4.772785	5.12054	0.00133228	7.15553e-5	0.0144372	0.00137393
chrX	85090447	85090546	18751857	0	+	0.383838	(0.36,0.39]	chrX	1600208	29	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.42503	4.772785	5.12054	0.00133228	7.15553e-5	0.0144372	0.00137393
chr2	46904863	46904962	2629831	0	-	0.464646	(0.455,0.49]	chr2	236786	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1:ENST00000409207.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	4.00069	4.772765	5.54484	5.13615e-5	4.89523e-6	0.00104999	1.67428e-4
chr1	45013706	45013791	174336	0	+	0.588235	(0.53,0.59]	chr1	22546	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000463092.5:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5:ENST00000490385.5:ENST00000460906.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000496439.1:ENST00000652514.1:ENST00000473012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.75615	4.77271	5.78927	2.16536e-4	2.83401e-6	0.00361336	9.62519e-5
chr19	53775598	53775692	17388531	0	+	0.553191	(0.53,0.59]	chr19	1446735	1	EXON_PSEUDO	EXON_PSEUDO	AC008753.3	ENSG00000238150.1	ENST00000423096.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	70	2	3.06939	4.77262	6.47585	6.54756e-4	1.951e-8	0.00860229	1.37715e-6
chr2	128108002	128108068	2059643	0	+	0.409091	(0.39,0.42]	chr2	193175	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000430075.5:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	4.01791	4.772085	5.52626	4.78174e-5	7.67816e-6	0.00109049	2.20857e-4
chr6	26188976	26189076	7647182	0	-	0.57	(0.53,0.59]	chr6	582537	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C4	ENSG00000277157.2	ENST00000614247.2	protein_coding	protein_coding	protein_coding	protein_coding	8	248	2	4.05912	4.77194	5.48476	1.80739e-9	4.29867e-12	1.77175e-7	8.96084e-10
chr12	54397364	54397425	13343727	0	-	0.508197	(0.49,0.53]	chr12	1049749	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000547197.1:ENST00000549601.1:ENST00000552431.5:ENST00000552387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	4.46303	4.77182	5.08061	1.00361e-4	2.57025e-6	0.00196575	8.8687100000000007e-05
chr4	82818790	82818884	5496418	0	-	0.329787	(0.29,0.33]	chr4	440157	4	UTR3	UTR3:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5	protein_coding	protein_coding	protein_coding	protein_coding	11	226	2	4.04007	4.771275	5.50248	4.52027e-10	1e-12	5.71527e-8	2.25522e-10
chr19	36146195	36146253	17308801	0	+	0.448276	(0.42,0.455]	chr19	1432247	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000592354.5:ENST00000586963.1:ENST00000589162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	54	2	4.67981	4.77095	4.86209	5.38444e-4	1.22097e-7	0.00744072	6.6496e-6
chr1	38710694	38710792	144556	0	+	0.418367	(0.39,0.42]	chr1	18021	19	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	172	2	2.74243	4.770885	6.79934	0.00369167	1e-12	0.030936	2.25522e-10
chr6	24705841	24705939	7638781	0	-	0.367347	(0.36,0.39]	chr6	581798	11	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	4.66059	4.77067	4.88075	8.34471e-8	6.96817e-9	5.32047e-6	5.67344e-7
chr16	16045835	16045924	15567770	0	+	0.561798	(0.53,0.59]	chr16	1232713	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	4.27016	4.770515	5.27087	5.9416e-5	2.78714e-7	0.00130151	1.34066e-5
chr9	5810083	5810157	10542798	0	-	0.405405	(0.39,0.42]	chr9	799404	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.14886	4.77037	5.39188	0.00415881	1.75441e-5	0.0325842	4.38078e-4
chr1	67258936	67259028	264125	0	+	0.445652	(0.42,0.455]	chr1	29505	6	CDS	CDS:UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.67981	4.7700949999999995	4.86038	5.38444e-4	3.34791e-4	0.00744072	0.00472923
chr1	196690150	196690239	640982	0	+	0.52809	(0.49,0.53]	chr1	64461	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.88887	4.77008	5.65129	9.98984e-5	3.38975e-6	0.00180257	1.23071e-4
chr6	30723818	30723913	7112216	0	+	0.557895	(0.53,0.59]	chr6	545065	6	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	1412	2	4.55474	4.769845	4.98495	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	69597155	69597215	12943527	0	+	0.466667	(0.455,0.49]	chr12	1008998	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000553169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	4.37693	4.769539999999999	5.16215	5.04348e-5	4.5365e-6	0.00113788	1.42727e-4
chrX	153702934	153702996	19273636	0	-	0.548387	(0.53,0.59]	chrX	1637359	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	92	2	4.4923	4.76949	5.04668	2.39218e-6	3.63266e-8	9.1799e-5	2.34568e-6
chr22	30581527	30581585	18471425	0	-	0.551724	(0.53,0.59]	chr22	1576230	1	CDS	CDS:EXON_MRNA	PES1	ENSG00000100029.18	ENST00000354694.12:ENST00000402281.5:ENST00000405677.5:ENST00000402284.7:ENST00000335214.8:ENST00000406208.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.76633	4.769275	4.77222	6.98999e-4	6.67251e-4	0.00867533	0.00846751
chr7	137879990	137880087	9097073	0	-	0.556701	(0.53,0.59]	chr7	694031	9	UTR3	UTR3:EXON_MRNA:INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.76633	4.769275	4.77222	6.98999e-4	6.67251e-4	0.00867533	0.00846751
chrX	154400463	154400544	18917612	0	+	0.567901	(0.53,0.59]	chrX	1611821	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	371	2	4.7449	4.769245	4.79359	6.37157e-12	1.07647e-12	1.26868e-9	2.40283e-10
chr1	228464276	228464364	1539749	0	-	0.704545	(0.59,1]	chr1	154188	3	EXON_PSEUDO	EXON_PSEUDO	H2BU2P	ENSG00000181201.3	ENST00000436555.1	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	0	35	2	4.7151	4.769175	4.82325	0.00412279	0.002381	0.0325842	0.0216895
chr11	66364363	66364424	12424285	0	-	0.704918	(0.59,1]	chr11	964620	1	CDS	CDS:UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.7151	4.769175	4.82325	0.00412279	0.002381	0.0325842	0.0216895
chr7	73297046	73297145	8331808	0	+	0.616162	(0.59,1]	chr7	634444	4	EXON_PSEUDO	EXON_PSEUDO	POM121B	ENSG00000205578.6	ENST00000380760.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	35	2	4.74378	4.76914	4.7945	0.0031766	0.00312942	0.0279054	0.0264364
chr12	6583026	6583114	13187211	0	-	0.5	(0.49,0.53]	chr12	1032312	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000646322.1:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000642637.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000540960.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.12263	4.769115	5.4156	0.00591451	1.84143e-5	0.0427941	4.53637e-4
chr9	5787429	5787502	10542563	0	-	0.506849	(0.49,0.53]	chr9	799362	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	4.12263	4.769115	5.4156	0.00591451	1.84143e-5	0.0427941	4.53637e-4
chr9	89709987	89710087	10350932	0	+	0.51	(0.49,0.53]	chr9	779162	76	INTRON	INTRON	UNQ6494	ENSG00000237372.4	ENST00000617436.1:ENST00000650746.1:ENST00000444374.1	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.12263	4.769115	5.4156	0.00591451	1.84143e-5	0.0427941	4.53637e-4
chrX	68070615	68070711	19098334	0	-	0.510417	(0.49,0.53]	chrX	1624707	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	OPHN1:PGK1P1	ENSG00000079482.14:ENSG00000228328.2	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1:ENST00000426382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	0	29	2	4.12263	4.769115	5.4156	0.00591451	1.84143e-5	0.0427941	4.53637e-4
chr3	122426784	122426884	4411562	0	-	0.48	(0.455,0.49]	chr3	366116	50	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5:ENST00000466923.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	4.71677	4.769045	4.82132	3.31178e-7	1.63946e-7	1.74638e-5	8.57024e-6
chr20	49089606	49089676	17811800	0	+	0.442857	(0.42,0.455]	chr20	1506568	2	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	2.93507	4.76872	6.60237	2.0621e-5	2.80087e-9	5.49034e-4	2.57422e-7
chr7	92613948	92614047	8924979	0	-	0.383838	(0.36,0.39]	chr7	681136	92	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	8	185	2	4.36563	4.768705000000001	5.17178	1.45562e-10	1e-12	1.8914e-8	2.46312e-10
chr9	100052416	100052474	10773241	0	-	0.362069	(0.36,0.39]	chr9	815469	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	3.16327	4.768515	6.37376	2.37351e-5	3.12288e-9	5.60496e-4	3.08118e-7
chr11	119046641	119046721	12626436	0	-	0.575	(0.53,0.59]	chr11	979753	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4	protein_coding	protein_coding	protein_coding	protein_coding	3	139	2	4.28604	4.76788	5.24972	9.59485e-6	4.7044e-11	2.93255e-4	6.95164e-9
chr2	96878042	96878142	2792374	0	-	0.59	(0.53,0.59]	chr2	249289	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	120	2	4.08367	4.767695	5.45172	1.14839e-6	1.11728e-9	4.9396e-5	1.15291e-7
chr10	70428319	70428418	11100514	0	+	0.515152	(0.49,0.53]	chr10	844350	67	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.74438	4.76762	4.79086	5.91752e-4	4.20783e-4	0.00743488	0.00611538
chr14	20476383	20476442	14171375	0	+	0.508475	(0.49,0.53]	chr14	1109153	1	CDS	CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.74438	4.76762	4.79086	5.91752e-4	4.20783e-4	0.00743488	0.00611538
chr16	30332	30432	15814896	0	-	0.46	(0.455,0.49]	chr16	1259781	4	SS3_PROX	SS3_PROX:INTRON	Z84812.4:IL9RP3	ENSG00000260803.1:ENSG00000226942.2	ENST00000568710.1:ENST00000442856.1	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	29	2	3.92463	4.76759	5.61055	0.0113417	3.16146e-6	0.0665375	1.16228e-4
chr12	95494956	95495052	13024988	0	+	0.385417	(0.36,0.39]	chr12	1013998	1	CDS	CDS:EXON_MRNA	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.0322	4.767575	5.50295	0.00588589	7.4907e-6	0.0427941	2.17853e-4
chr2	211775849	211775949	3149813	0	-	0.38	(0.36,0.39]	chr2	278203	248	INTRON	INTRON	ERBB4	ENSG00000178568.15	ENST00000342788.9:ENST00000402597.6:ENST00000436443.5:ENST00000484594.5:ENST00000260943.10:ENST00000484474.1:ENST00000435846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.0322	4.767575	5.50295	0.00588589	7.4907e-6	0.0427941	2.17853e-4
chr1	95193055	95193154	362117	0	+	0.363636	(0.36,0.39]	chr1	35683	13	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	7	180	2	4.22872	4.76731	5.3059	2.78175e-9	1e-12	2.78407e-7	2.25522e-10
chr8	90036840	90036940	9473512	0	+	0.44	(0.42,0.455]	chr8	720753	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000517761.5:ENST00000520227.1:ENST00000524326.1:ENST00000517301.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.40276	4.767225	5.13169	0.0017618	8.60227e-5	0.0180053	0.00160731
chrX	101401631	101401720	19151730	0	-	0.426966	(0.42,0.455]	chrX	1628690	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.40276	4.767225	5.13169	0.0017618	8.60227e-5	0.0180053	0.00160731
chrX	156008943	156009036	18924379	0	+	0.430108	(0.42,0.455]	chrX	1612721	10	INTRON	INTRON	IL9R:AJ271736.10	ENSG00000124334.17:ENSG00000270726.6	ENST00000244174.10:ENST00000369423.7:ENST00000483543.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	27	2	4.0898	4.767105000000001	5.44441	0.00698074	8.23077e-6	0.0473262	2.56136e-4
chr1	149519454	149519543	463145	0	+	0.460674	(0.455,0.49]	chr1	46384	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CH17-159N18.5:NBPF19	ENSG00000286185.1:ENSG00000271383.8	ENST00000621744.4:ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.6621	4.76698	4.87186	7.84472e-4	2.33781e-4	0.00927662	0.00385436
chr1	161677475	161677553	501611	0	+	0.487179	(0.455,0.49]	chr1	54376	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.6621	4.76698	4.87186	7.84472e-4	2.33781e-4	0.00927662	0.00385436
chr3	14477204	14477273	3320748	0	+	0.405797	(0.39,0.42]	chr3	292263	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	90	2	4.007	4.76692	5.52684	1.77795e-6	1.73069e-10	6.48503e-5	2.45247e-8
chr11	62790622	62790722	12410965	0	-	0.47	(0.455,0.49]	chr11	961587	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	TMEM223	ENSG00000168569.8	ENST00000527073.1:ENST00000528367.1:ENST00000525631.1:ENST00000307366.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.76048	4.766830000000001	4.77318	4.7888e-4	3.99985e-4	0.00628636	0.00588767
chr2	73292121	73292215	2738770	0	-	0.606383	(0.59,1]	chr2	243689	7	CDS	CDS:EXON_MRNA	EGR4	ENSG00000135625.8	ENST00000436467.4:ENST00000545030.1	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	2.47837	4.76682	7.05527	0.00970721	1.8899e-8	0.0608296	1.34479e-6
chr12	111451036	111451134	13092108	0	+	0.408163	(0.39,0.42]	chr12	1021116	29	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.66467	4.766065	5.86746	3.60066e-4	7.74696e-7	0.00544157	3.2172e-5
chr7	12362119	12362218	8683286	0	-	0.40404	(0.39,0.42]	chr7	663998	2	INTRON	INTRON	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.66467	4.766065	5.86746	3.60066e-4	7.74696e-7	0.00544157	3.2172e-5
chrX	40600768	40600832	18667582	0	+	0.40625	(0.39,0.42]	chrX	1591871	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000638046.1:ENST00000637165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.66467	4.766065	5.86746	3.60066e-4	7.74696e-7	0.00544157	3.2172e-5
chr6	63616271	63616361	7764055	0	-	0.511111	(0.49,0.53]	chr6	595887	6	EXON_PSEUDO	EXON_PSEUDO	RPL9P18	ENSG00000213309.3	ENST00000439124.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	65	2	2.72252	4.76594	6.80936	0.0161474	4.98748e-10	0.0860154	5.66789e-8
chr1	46309970	46310044	178608	0	+	0.567568	(0.53,0.59]	chr1	23168	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.66348	4.765855	4.86823	0.00107799	4.35895e-4	0.0118238	0.00623608
chr12	104031351	104031447	13057247	0	+	0.489583	(0.455,0.49]	chr12	1017437	7	EXON_PSEUDO	EXON_PSEUDO	RP11-490H24.5	ENSG00000216285.5	ENST00000547454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	29	2	4.0204	4.765415000000001	5.51043	0.00736097	9.08728e-6	0.0490627	2.53877e-4
chr16	14476892	14476992	15861472	0	-	0.4	(0.39,0.42]	chr16	1267203	61	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000564882.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.63883	4.765395	4.89196	5.68159e-4	2.62166e-4	0.0077844	0.0039188
chr22	22485305	22485404	18444735	0	-	0.414141	(0.39,0.42]	chr22	1572767	10	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.63883	4.765395	4.89196	5.68159e-4	2.62166e-4	0.0077844	0.0039188
chr16	87404185	87404284	15801168	0	+	0.383838	(0.36,0.39]	chr16	1257525	12	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.89918	4.765305	5.63143	1.0624e-4	3.24005e-6	0.00205241	1.07746e-4
chr20	37213812	37213865	17777713	0	+	0.433962	(0.42,0.455]	chr20	1502042	2	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	4	161	2	3.78713	4.765175	5.74322	9.02026e-6	1e-12	2.78052e-4	2.25522e-10
chr15	65877882	65877955	14982224	0	+	0.465753	(0.455,0.49]	chr15	1177730	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	4.28284	4.76504	5.24724	3.09759e-5	1.4648e-8	7.62166e-4	1.07724e-6
chr15	74410810	74410897	15374430	0	-	0.597701	(0.59,1]	chr15	1215148	2	CDS	CDS:EXON_MRNA:PRIMIRNA	SEMA7A:MIR6881	ENSG00000138623.10:ENSG00000277391.1	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6:ENST00000616450.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	0	35	2	4.65968	4.764725	4.86977	0.00413632	0.00246014	0.0324998	0.0230058
chr17	53757184	53757282	16598924	0	-	0.612245	(0.59,1]	chr17	1363765	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-213B3.1:RPS2P48	ENSG00000285939.2:ENSG00000233380.1	ENST00000650577.1:ENST00000441047.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	35	2	4.65968	4.764725	4.86977	0.00413632	0.00246014	0.0324998	0.0230058
chr11	320560	320650	12225833	0	-	0.577778	(0.53,0.59]	chr11	943148	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4:ENST00000681748.1:ENST00000680622.1:ENST00000681184.1:ENST00000680720.1:ENST00000679792.1:ENST00000679441.1:ENST00000679433.1:ENST00000680023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	9	306	2	4.69734	4.7646	4.83186	1.36875e-11	1.09293e-11	2.51668e-9	1.88204e-9
chr4	38697757	38697856	4796664	0	+	0.454545	(0.42,0.455]	chr4	395582	6	UTR3	UTR3:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.24133	4.764575	5.28782	0.00326918	3.65299e-5	0.0282494	7.95843e-4
chr4	79857695	79857795	4918436	0	+	0.45	(0.42,0.455]	chr4	404556	146	INTRON	INTRON	PCAT4	ENSG00000251321.1	ENST00000504263.1:ENST00000514836.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.24133	4.764575	5.28782	0.00326918	3.65299e-5	0.0282494	7.95843e-4
chr4	146294012	146294095	5710508	0	-	0.445783	(0.42,0.455]	chr4	452169	2	CDS	CDS:EXON_MRNA	SLC10A7	ENSG00000120519.15	ENST00000432059.6:ENST00000335472.12:ENST00000507030.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.24133	4.764575	5.28782	0.00326918	3.65299e-5	0.0282494	7.95843e-4
chr19	44919172	44919230	17349792	0	+	0.396552	(0.39,0.42]	chr19	1439274	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	APOC1	ENSG00000130208.10	ENST00000588750.5:ENST00000588802.5:ENST00000592535.6:ENST00000592885.5:ENST00000589781.1:ENST00000592176.1:ENST00000586638.5:ENST00000590334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	3.93737	4.76454	5.59171	7.80292e-5	1.59155e-10	0.00162998	2.03766e-8
chr16	56403051	56403118	15959405	0	-	0.462687	(0.455,0.49]	chr16	1279924	2	CDS	CDS:EXON_MRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000565445.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.85172	4.7643699999999995	6.67702	0.010864	1.25487e-9	0.0643837	1.28539e-7
chr6	168442253	168442353	7551343	0	+	0.57	(0.53,0.59]	chr6	576501	4	INTRON	INTRON	SMOC2	ENSG00000112562.19	ENST00000354536.9:ENST00000356284.7	protein_coding	protein_coding	protein_coding	protein_coding	4	194	2	2.90632	4.76434	6.62236	3.72925e-4	1e-12	0.00559101	2.25522e-10
chr13	73440418	73440518	14071666	0	-	0.49	(0.455,0.49]	chr13	1102118	264	INTRON	INTRON	LINC00393	ENSG00000224853.3	ENST00000443621.1	lncRNA	lncRNA	lncRNA	lncRNA	21	607	2	4.49305	4.764285	5.03552	2.43572e-12	1e-12	5.4123e-10	2.25522e-10
chr16	69463711	69463810	15723957	0	+	0.373737	(0.36,0.39]	chr16	1252041	13	UTR3	UTR3:EXON_MRNA	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.24194	4.763895	5.28585	0.00276729	2.81625e-5	0.0247437	6.42183e-4
chr5	81836674	81836774	6063284	0	+	0.37	(0.36,0.39]	chr5	475923	2	SS5_PROX	SS5_PROX:INTRON	CTD-2249K22.3	ENSG00000287938.1	ENST00000659627.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.24194	4.763895	5.28585	0.00276729	2.81625e-5	0.0247437	6.42183e-4
chr4	102267891	102267991	5560694	0	-	0.53	(0.49,0.53]	chr4	444071	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	4.73676	4.76381	4.79086	4.20783e-4	3.38109e-7	0.00611538	1.5857e-5
chr17	76778187	76778252	16359798	0	+	0.492308	(0.49,0.53]	chr17	1328710	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD11	ENSG00000092931.11	ENST00000586622.5:ENST00000588460.5:ENST00000621483.4:ENST00000355954.7:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000585692.5:ENST00000585865.1:ENST00000590070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.63338	4.7637149999999995	4.89405	9.56909e-4	2.57983e-4	0.010724	0.00419998
chr19	55675735	55675835	17397369	0	+	0.52	(0.49,0.53]	chr19	1448953	3	SS5_PROX	SS5_PROX:INTRON	EPN1	ENSG00000063245.15	ENST00000270460.11:ENST00000085079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.63338	4.7637149999999995	4.89405	9.56909e-4	2.57983e-4	0.010724	0.00419998
chr3	33065506	33065557	4111649	0	-	0.529412	(0.49,0.53]	chr3	343523	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.42954	4.763655	6.09777	0.00105489	1.87775e-7	0.0123035	9.63683e-6
chr6	52276336	52276406	7736715	0	-	0.514286	(0.49,0.53]	chr6	593727	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.42954	4.763655	6.09777	0.00105489	1.87775e-7	0.0123035	9.63683e-6
chr17	74440439	74440533	16350209	0	+	0.680851	(0.59,1]	chr17	1326483	7	CDS	CDS:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	GPRC5C	ENSG00000170412.18	ENST00000342648.9:ENST00000481232.2:ENST00000652232.1:ENST00000392627.7:ENST00000392628.7:ENST00000652294.1:ENST00000392629.3:ENST00000581590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	3.98751	4.7636	5.53969	0.0301044	1.29608e-4	0.129773	0.00223885
chr17	67945408	67945499	16333324	0	+	0.505495	(0.49,0.53]	chr17	1325046	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5:ENST00000582406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.67972	4.763579999999999	4.84744	6.94757e-4	3.70203e-4	0.00876781	0.00515475
chr2	96297001	96297070	2790512	0	-	0.492754	(0.49,0.53]	chr2	248817	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.67972	4.763579999999999	4.84744	6.94757e-4	3.70203e-4	0.00876781	0.00515475
chr1	21890426	21890485	891397	0	-	0.491525	(0.49,0.53]	chr1	92603	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000412328.5:ENST00000374673.4:ENST00000439717.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	2.99849	4.763425	6.52836	0.00630123	5.94027e-9	0.0445415	4.95921e-7
chr17	41867015	41867114	16543738	0	-	0.414141	(0.39,0.42]	chr17	1356443	2	UTR3	UTR3:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5	protein_coding	protein_coding	protein_coding	protein_coding	5	134	2	4.66736	4.763355000000001	4.85935	1.16841e-9	2.50282e-10	1.20318e-7	3.41012e-8
chr10	69171367	69171465	11094667	0	+	0.285714	[0,0.29]	chr10	843467	2	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.36183	4.763205	5.16458	0.00170062	3.97867e-5	0.01759	8.56316e-4
chrX	20125718	20125817	18985407	0	-	0.272727	[0,0.29]	chrX	1616648	13	UTR3	UTR3:EXON_MRNA	EIF1AX	ENSG00000173674.11	ENST00000379607.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.36183	4.763205	5.16458	0.00170062	3.97867e-5	0.01759	8.56316e-4
chr8	123022683	123022779	10055986	0	-	0.40625	(0.39,0.42]	chr8	756453	1	CDS	CDS:EXON_MRNA:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.93737	4.7632	5.58903	7.80292e-5	5.14263e-6	0.00162998	1.58468e-4
chr2	239915288	239915388	3244901	0	-	0.42	(0.39,0.42]	chr2	285963	19	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	3.49145	4.763155	6.03486	0.0350273	8.33472e-8	0.141505	5.31572e-6
chr9	130099456	130099532	10488123	0	+	0.460526	(0.455,0.49]	chr9	791941	1	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.89235	4.762835	5.63332	9.60445e-5	4.15159e-6	0.00190731	1.32627e-4
chr11	78226855	78226953	12478434	0	-	0.561224	(0.53,0.59]	chr11	970869	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000340149.6:ENST00000528329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.00393	4.762805	5.52168	0.0108084	1.48967e-5	0.064368	3.81697e-4
chr14	22875354	22875446	14175056	0	+	0.565217	(0.53,0.59]	chr14	1110443	1	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000553002.1:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.00393	4.762805	5.52168	0.0108084	1.48967e-5	0.064368	3.81697e-4
chr3	195785837	195785937	4661125	0	-	0.56	(0.53,0.59]	chr3	385270	72	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	4.40251	4.76276	5.12301	1.2852e-4	4.48447e-6	0.00241206	1.41623e-4
chr1	174991594	174991693	559111	0	+	0.242424	[0,0.29]	chr1	58803	17	UTR3	UTR3:EXON_MRNA:INTRON	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000489615.5:ENST00000392064.6:ENST00000485114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.45419	4.76232	5.07045	0.00133426	5.08054e-5	0.0139317	0.00114377
chr8	92873720	92873820	9950803	0	-	0.24	[0,0.29]	chr8	750722	873	INTRON	INTRON	FLJ46284	ENSG00000248858.7	ENST00000504861.2	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	4.45419	4.76232	5.07045	0.00133426	5.08054e-5	0.0139317	0.00114377
chr2	70088520	70088617	1878486	0	+	0.43299	(0.42,0.455]	chr2	177396	8	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	11	299	2	4.05682	4.762285	5.46775	2.90621e-10	1e-12	3.87631e-8	2.25522e-10
chr19	19527700	19527754	17264135	0	+	0.555556	(0.53,0.59]	chr19	1426416	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000428459.6:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	193	2	4.46684	4.76217	5.0575	3.24657e-8	1.1264e-10	2.34482e-6	1.50568e-8
chr19	10923494	10923585	17460893	0	-	0.681319	(0.59,1]	chr19	1461240	1	CDS	CDS:EXON_MRNA	YIPF2	ENSG00000130733.11	ENST00000253031.6:ENST00000586748.6:ENST00000592646.5:ENST00000589971.1:ENST00000591872.1:ENST00000590329.5:ENST00000586575.5:ENST00000587943.5	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	4.7151	4.761925	4.80875	0.00412279	1.14636e-6	0.0325842	4.49174e-5
chr1	201135662	201135762	1446498	0	-	0.61	(0.59,1]	chr1	145189	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	332	2	4.32111	4.76125	5.20139	1.01643e-6	1.20475e-10	4.4913e-5	1.60181e-8
chrX	66193501	66193569	18717550	0	+	0.455882	(0.455,0.49]	chrX	1596983	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.12843	4.76112	6.39381	0.00392855	1.45725e-8	0.0322851	1.07259e-6
chr2	128180980	128181072	2060414	0	+	0.445652	(0.42,0.455]	chr2	193364	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7:ENST00000418197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	4.02772	4.761	5.49428	4.30844e-5	1.07978e-5	0.00100091	2.9314e-4
chr20	49066437	49066510	17811552	0	+	0.369863	(0.36,0.39]	chr20	1506490	2	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.58747	4.76064	4.93381	6.55819e-4	1.90009e-4	0.00860229	0.00302753
chr8	70593215	70593313	9881476	0	-	0.367347	(0.36,0.39]	chr8	746939	52	INTRON	INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.58747	4.76064	4.93381	6.55819e-4	1.90009e-4	0.00860229	0.00302753
chr6	26217170	26217267	7101606	0	+	0.57732000000000006	(0.53,0.59]	chr6	542860	2	CDS	CDS:EXON_MRNA	H2AC8	ENSG00000277075.2	ENST00000303910.4	protein_coding	protein_coding	protein_coding	protein_coding	5	181	2	4.68791	4.760255	4.8326	2.39054e-9	4.81043e-10	2.245e-7	6.04555e-8
chr16	18789013	18789113	15877032	0	-	0.5	(0.49,0.53]	chr16	1269286	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPS15A:RP11-1035H13.3	ENSG00000134419.15:ENSG00000260342.2	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000565420.5:ENST00000569083.1:ENST00000567078.2:ENST00000573554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	600	2	4.01716	4.759705	5.50225	2.83829e-12	1e-12	5.71724e-10	2.46312e-10
chr11	118601914	118602007	12159747	0	+	0.451613	(0.42,0.455]	chr11	937279	3	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	12	321	2	4.72361	4.759494999999999	4.79538	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	12572790	12572853	862136	0	-	0.619048	(0.59,1]	chr1	87509	2	CDS	CDS:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.53648	4.75924	5.982	0.00107706	1.42041e-5	0.0124943	3.66887e-4
chr19	582305	582330	17188330	0	+	0.68	(0.59,1]	chr19	1410782	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	292	2	4.08843	4.75919	5.42995	4.17866e-8	2.44973e-8	2.63437e-6	1.82809e-6
chr7	103630018	103630097	8964594	0	-	0.379747	(0.36,0.39]	chr7	686298	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1:ENST00000473457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.33241	4.759145	6.18588	0.00193631	5.43608e-8	0.0192272	3.31855e-6
chr7	101206841	101206904	8953627	0	-	0.666667	(0.59,1]	chr7	684652	2	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.2353	4.7590699999999995	5.28284	0.0165254	4.04404e-4	0.0873033	0.00550292
chr11	86013482	86013581	12526291	0	-	0.40404	(0.39,0.42]	chr11	972248	7	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	4.70552	4.758979999999999	4.81244	1.71008e-7	4.01331e-9	8.87341e-6	3.83648e-7
chr9	78306399	78306486	10320858	0	+	0.45977	(0.455,0.49]	chr9	777264	2	CDS	CDS:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.54174	4.758495	4.97525	0.00130137	1.38474e-4	0.0136936	0.00254294
chr1	21855786	21855849	890993	0	-	0.714286	(0.59,1]	chr1	92410	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	118	2	2.67401	4.758445	6.84288	0.00166951	7.98778e-8	0.0173932	4.61179e-6
chr5	10417269	10417336	5875363	0	+	0.522388	(0.49,0.53]	chr5	462030	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1:ENST00000514312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	194	2	4.6145	4.758335	4.90217	1.14101e-8	3.91998e-12	9.51023e-7	7.60628e-10
chr15	101645086	101645162	15478991	0	-	0.447368	(0.42,0.455]	chr15	1223769	1	CDS	CDS:UTR3:EXON_MRNA	TM2D3	ENSG00000184277.13	ENST00000559107.5:ENST00000428002.6:ENST00000558129.5:ENST00000347970.7:ENST00000333202.8:ENST00000559891.1:ENST00000561373.1:ENST00000560013.5:ENST00000558677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.62856	4.758265	5.88797	4.02604e-4	3.72505e-7	0.00549837	1.92638e-5
chr1	236483640	236483739	769255	0	+	0.575758	(0.53,0.59]	chr1	77526	11	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	2	101	2	4.04528	4.7582450000000005	5.47121	4.28524e-5	9.37257e-10	9.98851e-4	9.91786e-8
chr12	124876387	124876486	13601152	0	-	0.474747	(0.455,0.49]	chr12	1071763	89	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000535005.5:ENST00000541661.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.63978	4.758055000000001	4.87633	6.94032e-4	2.95855e-4	0.00876781	0.00432147
chr5	75345573	75345658	6036995	0	+	0.435294	(0.42,0.455]	chr5	473601	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	218	2	4.59434	4.75792	4.9215	4.90413e-10	4.43556e-12	6.13378e-8	8.47939e-10
chr13	36985626	36985683	13968961	0	-	0.403509	(0.39,0.42]	chr13	1096009	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1:ENST00000681892.1:ENST00000681727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	4.62228	4.75723	4.89218	1.6518e-4	7.53778e-7	0.0029267300000000002	3.14118e-5
chr1	149884742	149884837	1287090	0	-	0.463158	(0.455,0.49]	chr1	127851	4	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	3.96899	4.756914999999999	5.54484	4.89523e-6	2.27279e-7	1.67428e-4	1.1289e-5
chr17	18572821	18572891	16151617	0	+	0.557143	(0.53,0.59]	chr17	1302337	2	EXON_PSEUDO	EXON_PSEUDO	AC107983.4	ENSG00000227077.3	ENST00000442562.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	90	2	4.6032400000000004	4.7569	4.91056	1.08833e-6	1.08461e-7	4.73591e-5	5.98453e-6
chr6	39191659	39191755	7690377	0	-	0.583333	(0.53,0.59]	chr6	589669	8	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.87884	4.75679	5.63474	1.11478e-4	7.53339e-6	0.00213212	2.17987e-4
chr1	33064500	33064600	924983	0	-	0.5	(0.49,0.53]	chr1	97565	276	INTRON	INTRON	AK2	ENSG00000004455.17	ENST00000548559.1	protein_coding	processed_transcript	protein_coding	processed_transcript	23	701	2	3.10817	4.75604	6.40391	5.22187e-8	1e-12	3.51841e-6	2.25522e-10
chr20	32234561	32234661	17752929	0	+	0.62	(0.59,1]	chr20	1498584	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.54183	4.755990000000001	4.97015	0.0070583	0.00140057	0.0478044	0.0144327
chr1	150266194	150266275	1288635	0	-	0.617284	(0.59,1]	chr1	128181	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.57037	4.755834999999999	4.9413	0.0054994	0.00191468	0.0402071	0.0190905
chr19	6372793	6372820	17213198	0	+	0.62963	(0.59,1]	chr19	1415828	1	UTR5	UTR5:EXON_MRNA	ALKBH7	ENSG00000125652.8	ENST00000245812.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.57037	4.755834999999999	4.9413	0.0054994	0.00191468	0.0402071	0.0190905
chr19	10256766	10256825	17224455	0	+	0.711864	(0.59,1]	chr19	1418455	2	CDS	CDS:EXON_MRNA:INTRON	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000591054.5:ENST00000307422.9:ENST00000590150.5:ENST00000590669.5:ENST00000253099.11:ENST00000393733.6:ENST00000588502.5:ENST00000590702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.57037	4.755834999999999	4.9413	0.0054994	0.00191468	0.0402071	0.0190905
chr11	1759027	1759087	12230485	0	-	0.516667	(0.49,0.53]	chr11	944405	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000677300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	4.70486	4.75558	4.8063	3.98937e-7	1.96248e-7	2.04083e-5	9.99962e-6
chr4	3532208	3532260	5285851	0	-	0.576923	(0.53,0.59]	chr4	425845	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1:ENST00000650633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.55274	4.755495	4.95825	0.00167999	2.87508e-4	0.0164993	0.00457439
chr11	73677798	73677897	12457787	0	-	0.454545	(0.42,0.455]	chr11	968371	23	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	3.73638	4.75545	5.77452	1.4989e-6	8.63204e-7	5.63087e-5	3.91474e-5
chr16	2332396	2332480	15825974	0	-	0.488095	(0.455,0.49]	chr16	1262557	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABCA3:RP11-715J22.1	ENSG00000167972.14:ENSG00000243445.1	ENST00000382381.7:ENST00000301732.10:ENST00000563623.5:ENST00000468708.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	0	26	2	4.36307	4.755405	5.14774	0.00218641	7.45457e-5	0.0208941	0.00142165
chr2	24769450	24769546	1682326	0	+	0.46875	(0.455,0.49]	chr2	164459	12	UTR3	UTR3:EXON_MRNA	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.36307	4.755405	5.14774	0.00218641	7.45457e-5	0.0208941	0.00142165
chr7	100631002	100631052	8952271	0	-	0.64	(0.59,1]	chr7	684186	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.34487	4.7553149999999995	5.16576	0.0123678	6.55716e-4	0.0705839	0.0080931
chr19	49338857	49338936	17369716	0	+	0.632911	(0.59,1]	chr19	1442757	3	CDS	CDS:UTR3:EXON_MRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000597852.5:ENST00000535669.6:ENST00000594743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.37323	4.75501	5.13679	0.00990413	9.28022e-4	0.061536	0.0111748
chr11	62789358	62789426	11974108	0	+	0.470588	(0.455,0.49]	chr11	917980	2	CDS	CDS:EXON_MRNA:PRIMIRNA	TMEM179B:MIR6748	ENSG00000185475.11:ENSG00000284535.1	ENST00000333449.9:ENST00000533861.5:ENST00000532586.1:ENST00000532345.1:ENST00000526546.1:ENST00000610433.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	45	2	3.56037	4.754894999999999	5.94942	5.72551e-4	4.68666e-7	0.0078026	2.08717e-5
chr7	10452281	10452378	8129140	0	+	0.412371	(0.39,0.42]	chr7	621313	11	EXON_PSEUDO	EXON_PSEUDO	HSPA8P8	ENSG00000229091.3	ENST00000419827.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	43	2	4.3053	4.754825	5.20435	2.91423e-5	7.30538e-6	7.26551e-4	2.13219e-4
chr1	21878993	21879057	891265	0	-	0.671875	(0.59,1]	chr1	92545	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000480900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	2.84944	4.754805	6.66017	0.0128238	2.62838e-7	0.0719798	1.27591e-5
chr2	171965337	171965427	2208536	0	+	0.377778	(0.36,0.39]	chr2	202141	1	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	4.07544	4.754795	5.43415	3.61377e-5	1.15393e-5	8.73633e-4	3.09736e-4
chr13	52475636	52475735	13747252	0	+	0.464646	(0.455,0.49]	chr13	1082861	6	UTR3	UTR3:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.10535	4.754524999999999	5.4037	0.0064531	1.20695e-5	0.0450905	3.52389e-4
chr1	86784912	86785004	339493	0	+	0.445652	(0.42,0.455]	chr1	33572	1	EXON_PSEUDO	EXON_PSEUDO	RP4-612B15.2	ENSG00000230721.1	ENST00000447415.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	60	2	4.40276	4.754205	5.10565	0.0017618	1.5934e-8	0.0180053	1.15646e-6
chr2	32947522	32947621	1718286	0	+	0.818182	(0.59,1]	chr2	168628	2	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.11672	4.75392	5.39112	0.0222273	2.53595e-4	0.105595	0.00381472
chr8	22412036	22412110	9224934	0	+	0.648649	(0.59,1]	chr8	705678	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000517370.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.11672	4.75392	5.39112	0.0222273	2.53595e-4	0.105595	0.00381472
chr17	48895669	48895769	16255808	0	+	0.54	(0.53,0.59]	chr17	1317522	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ATP5MC1	ENSG00000159199.14	ENST00000355938.9:ENST00000513347.1:ENST00000393366.7:ENST00000503641.5:ENST00000506855.1:ENST00000513781.5:ENST00000502964.5:ENST00000515060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	117	2	4.56882	4.753825	4.93883	8.67024e-8	2.36766e-8	4.94425e-6	1.777e-6
chr9	64048185	64048285	10276715	0	+	0.4	(0.39,0.42]	chr9	773582	164	INTRON	INTRON	FLJ43315	ENSG00000288690.1	ENST00000680973.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	96	2	3.93679	4.753795	5.5708	3.23284e-6	1.95394e-10	1.18341e-4	2.46454e-8
chr6	26216974	26217074	7101604	0	+	0.58	(0.53,0.59]	chr6	542859	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC8	ENSG00000277075.2	ENST00000303910.4	protein_coding	protein_coding	protein_coding	protein_coding	10	321	2	4.54878	4.753755	4.95873	3.56609e-11	4.6938e-12	5.42821e-9	9.68783e-10
chr16	32880692	32880791	15920262	0	-	0.525253	(0.49,0.53]	chr16	1276412	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SLC6A10P	ENSG00000214617.9	ENST00000330048.9:ENST00000431994.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	46	2	3.68499	4.7535799999999995	5.82217	2.9991e-4	1.36598e-6	0.00472028	5.18684e-5
chr1	54852232	54852332	1030571	0	-	0.59	(0.53,0.59]	chr1	106988	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	4.04528	4.7534600000000005	5.46164	4.28524e-5	2.11519e-5	9.98851e-4	5.06522e-4
chr10	6221043	6221122	10911650	0	+	0.443038	(0.42,0.455]	chr10	830858	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000379785.5:ENST00000490474.5:ENST00000477914.5:ENST00000467491.5:ENST00000461744.5:ENST00000317350.8:ENST00000626882.2:ENST00000625260.2:ENST00000360521.7:ENST00000640683.1:ENST00000379775.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.39468	4.75343	5.11218	0.00240483	6.01815e-5	0.0217482	0.00130886
chr1	203700797	203700860	669467	0	+	0.555556	(0.53,0.59]	chr1	67414	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.62204	4.75292	5.8838	4.3021e-4	1.51824e-6	0.00620274	5.67784e-5
chr10	72190121	72190212	11110947	0	+	0.472527	(0.455,0.49]	chr10	845318	3	EXON_PSEUDO	EXON_PSEUDO	RPL15P14	ENSG00000226701.1	ENST00000416278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.20189	4.7529	5.30391	0.00397662	3.12735e-5	0.0322851	6.97306e-4
chr17	5432934	5433014	16421505	0	-	0.475	(0.455,0.49]	chr17	1338171	3	UTR3	UTR3:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.20189	4.7529	5.30391	0.00397662	3.12735e-5	0.0322851	6.97306e-4
chr3	64018652	64018707	4241394	0	-	0.472727	(0.455,0.49]	chr3	356552	2	CDS	CDS:EXON_MRNA	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5:ENST00000497315.5:ENST00000475036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.20189	4.7529	5.30391	0.00397662	3.12735e-5	0.0322851	6.97306e-4
chr5	151746324	151746424	6919863	0	-	0.47	(0.455,0.49]	chr5	530201	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ATOX1	ENSG00000177556.12	ENST00000521264.5:ENST00000524142.5:ENST00000313115.11:ENST00000520382.5:ENST00000522314.5:ENST00000522145.5:ENST00000522710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.20189	4.7529	5.30391	0.00397662	3.12735e-5	0.0322851	6.97306e-4
chr6	40000244	40000338	7147368	0	+	0.478723	(0.455,0.49]	chr6	551108	9	EXON_LNCRNA	EXON_LNCRNA	TUBBP9	ENSG00000220586.2	ENST00000649703.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	27	2	4.20189	4.7529	5.30391	0.00397662	3.12735e-5	0.0322851	6.97306e-4
chr8	100706650	100706727	9975974	0	-	0.428571	(0.42,0.455]	chr8	752664	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519848.1:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	49	1216	2	4.63034	4.75282	4.8753	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	26033175	26033275	7646933	0	-	0.55	(0.53,0.59]	chr6	582492	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC4	ENSG00000278463.2	ENST00000615868.2	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.94125	4.7527	6.56415	0.0012261800000000001	9.5574e-9	0.0135648	7.4729e-7
chr4	151099652	151099714	5165543	0	+	0.516129	(0.49,0.53]	chr4	417300	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	534	2	4.00861	4.752685	5.49676	1.33212e-10	1e-12	1.93965e-8	2.25522e-10
chr2	195680810	195680906	2290373	0	+	0.447917	(0.42,0.455]	chr2	207584	8	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	3.79103	4.75265	5.71427	8.61353e-6	1.33053e-6	2.43348e-4	5.6008e-5
chr2	214847365	214847445	2374863	0	+	0.6125	(0.59,1]	chr2	213368	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	SNHG31:RPL10P6	ENSG00000229267.3:ENSG00000230076.1	ENST00000655899.1:ENST00000670391.1:ENST00000664818.1:ENST00000607412.1:ENST00000457497.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	199	2	4.63181	4.752605	4.8734	4.23414e-6	1.7094e-8	1.4819e-4	1.23244e-6
chrX	153798333	153798433	18916214	0	+	0.61	(0.59,1]	chrX	1611460	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5:ENST00000447375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	641	2	4.49273	4.7525200000000005	5.01231	2.98946e-9	1.09175e-11	2.96635e-7	1.88095e-9
chr19	811388	811482	17189588	0	+	0.5	(0.49,0.53]	chr19	1411055	7	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	132	2	4.68666	4.75248	4.8183	5.90266e-9	1.97443e-9	5.35581e-7	1.91611e-7
chr20	35669032	35669130	17955154	0	-	0.438776	(0.42,0.455]	chr20	1521129	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP1-309K20.6:NFS1	ENSG00000272897.5:ENSG00000244005.13	ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000374092.9:ENST00000374085.5:ENST00000480655.5:ENST00000498084.5:ENST00000397425.5:ENST00000440385.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.54792	4.75226	4.9566	9.66045e-4	2.10615e-4	0.0115185	0.00327655
chr7	856357	856401	8093731	0	+	0.431818	(0.42,0.455]	chr7	618451	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.54792	4.75226	4.9566	9.66045e-4	2.10615e-4	0.0115185	0.00327655
chr18	60149475	60149575	16913797	0	+	0.49	(0.455,0.49]	chr18	1392146	164	INTRON	INTRON	RP11-795H16.3	ENSG00000267686.2	ENST00000588794.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	3.81275	4.7519	5.69105	0.0138827	2.83777e-6	0.0760883	9.62519e-5
chr7	6434761	6434847	8664385	0	-	0.465116	(0.455,0.49]	chr7	662793	1	CDS	CDS:EXON_MRNA:INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	3.81275	4.7519	5.69105	0.0138827	2.83777e-6	0.0760883	9.62519e-5
chr19	1383608	1383707	17192826	0	+	0.565657	(0.53,0.59]	chr19	1412071	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFS7	ENSG00000115286.20	ENST00000546283.5	protein_coding	protein_coding	protein_coding	protein_coding	68	2543	2	3.90016	4.751885	5.60361	2.77389e-12	1e-12	6.05424e-10	2.25522e-10
chr5	1320673	1320731	6423324	0	-	0.482759	(0.455,0.49]	chr5	500666	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503534.5:ENST00000515719.5:ENST00000506641.5:ENST00000511268.6:ENST00000512451.5:ENST00000507195.5:ENST00000505914.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	63	2	2.69053	4.751885	6.81324	0.0182983	3.61927e-10	0.0925808	4.26011e-8
chr11	10779379	10779471	11799526	0	+	0.336957	(0.33,0.36]	chr11	903615	4	UTR3	UTR3:EXON_MRNA:INTRON	CTR9	ENSG00000198730.9	ENST00000361367.7:ENST00000532365.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.52266	4.751855	4.98105	8.34989e-4	1.32493e-4	0.0102956	0.00227943
chr16	15036960	15037058	15562405	0	+	0.357143	(0.33,0.36]	chr16	1232374	8	UTR3	UTR3:EXON_MRNA:INTRON	PDXDC1	ENSG00000179889.19	ENST00000535621.6:ENST00000396410.9:ENST00000570001.5:ENST00000569715.5:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.52266	4.751855	4.98105	8.34989e-4	1.32493e-4	0.0102956	0.00227943
chr6	131707195	131707294	7403386	0	+	0.343434	(0.33,0.36]	chr6	567433	132	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.52266	4.751855	4.98105	8.34989e-4	1.32493e-4	0.0102956	0.00227943
chr11	70420610	70420699	12006971	0	+	0.516854	(0.49,0.53]	chr11	924854	1	SS5_PROX	SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000527962.5:ENST00000483662.2:ENST00000498223.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.51312	4.75173	4.99034	0.00156636	1.6002e-4	0.0156889	0.00286408
chr12	119686546	119686641	13576767	0	-	0.505263	(0.49,0.53]	chr12	1068230	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.51312	4.75173	4.99034	0.00156636	1.6002e-4	0.0156889	0.00286408
chr1	21828834	21828915	890667	0	-	0.679012	(0.59,1]	chr1	92232	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	143	2	4.54391	4.7516750000000005	4.95944	7.07916e-6	4.33654e-7	2.27834e-4	1.96231e-5
chr2	15275566	15275650	2527209	0	-	0.5	(0.49,0.53]	chr2	227327	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.55929	4.75146	4.94363	0.00116196	2.3417e-4	0.0130851	0.00355764
chr19	11450878	11450968	17231285	0	+	0.533333	(0.53,0.59]	chr19	1419944	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000589838.5:ENST00000586486.1:ENST00000591510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	3.61856	4.75118	5.8838	0.0303021	1.51824e-6	0.129773	5.67784e-5
chrX	85089755	85089854	18751850	0	+	0.393939	(0.39,0.42]	chrX	1600208	22	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	4.58104	4.750495	4.91995	1.0275e-6	5.74206e-8	4.08333e-5	3.82694e-6
chr16	14661981	14662065	15560135	0	+	0.547619	(0.53,0.59]	chr16	1231766	2	CDS	CDS:UTR3:EXON_MRNA	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000261658.7:ENST00000563313.5:ENST00000566710.1:ENST00000562545.5:ENST00000564078.1:ENST00000565478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.30776	4.75032	5.19288	0.00407289	9.22873e-5	0.0324137	0.0016906
chr8	125003259	125003343	9595397	0	+	0.52381	(0.49,0.53]	chr8	727899	2	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	8	239	2	4.09456	4.750255	5.40595	2.56233e-9	1e-12	2.59806e-7	2.25522e-10
chr2	101005859	101005958	1957026	0	+	0.393939	(0.39,0.42]	chr2	185904	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL31	ENSG00000071082.11	ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	4.62228	4.7498450000000005	4.87741	7.53778e-7	8.30335e-8	3.14118e-5	5.29895e-6
chr18	12725438	12725531	16763576	0	+	0.494624	(0.49,0.53]	chr18	1382698	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586587.1:ENST00000317615.11:ENST00000588824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.84832	4.749805	5.65129	5.8066e-6	3.38975e-6	1.75335e-4	1.23071e-4
chr2	43888104	43888203	2622911	0	-	0.393939	(0.39,0.42]	chr2	236084	20	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	4.49485	4.74938	5.00391	9.12714e-5	1.93637e-6	0.00182992	6.9799e-5
chr3	57626734	57626833	4210954	0	-	0.323232	(0.29,0.33]	chr3	355351	14	UTR3	UTR3:EXON_MRNA	DENND6A	ENSG00000174839.13	ENST00000311128.10	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.6953	4.74926	4.80322	4.88271e-4	2.14303e-4	0.00638318	0.00359478
chr3	149035694	149035793	4509115	0	-	0.292929	(0.29,0.33]	chr3	374159	3	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1:ENST00000472830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.6953	4.74926	4.80322	4.88271e-4	2.14303e-4	0.00638318	0.00359478
chr7	135424045	135424144	9083976	0	-	0.323232	(0.29,0.33]	chr7	693516	13	INTRON	INTRON	CNOT4	ENSG00000080802.19	ENST00000541284.5:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.6953	4.74926	4.80322	4.88271e-4	2.14303e-4	0.00638318	0.00359478
chr10	114900997	114901089	11265345	0	+	0.532609	(0.53,0.59]	chr10	858524	4	EXON_PSEUDO	EXON_PSEUDO	RPL15P13	ENSG00000226428.1	ENST00000414329.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.16383	4.748670000000001	5.33351	0.00659193	4.35359e-5	0.0454205	0.00091744700000000005
chr11	43323567	43323636	11919805	0	+	0.565217	(0.53,0.59]	chr11	910828	3	CDS	CDS:EXON_MRNA:INTRON	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7:ENST00000534600.5:ENST00000526394.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.16383	4.748670000000001	5.33351	0.00659193	4.35359e-5	0.0454205	0.00091744700000000005
chr17	42307592	42307657	16228099	0	+	0.553846	(0.53,0.59]	chr17	1312838	1	CDS	CDS:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000468096.5:ENST00000591556.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.16383	4.748670000000001	5.33351	0.00659193	4.35359e-5	0.0454205	0.00091744700000000005
chr21	32841653	32841732	18217875	0	-	0.582278	(0.53,0.59]	chr21	1546150	3	EXON_PSEUDO	EXON_PSEUDO	AP000281.1	ENSG00000224427.1	ENST00000444036.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	4.16383	4.748670000000001	5.33351	0.00659193	4.35359e-5	0.0454205	0.00091744700000000005
chr5	10394752	10394785	5875119	0	+	0.393939	(0.39,0.42]	chr5	461955	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	4.42473	4.748655	5.07258	3.06235e-6	1.94725e-8	1.13887e-4	1.37715e-6
chr2	112661141	112661226	2001901	0	+	0.435294	(0.42,0.455]	chr2	190050	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	4.60214	4.74851	4.89488	7.96714e-7	9.35766e-8	3.65339e-5	5.27504e-6
chr17	47673091	47673165	16251879	0	+	0.459459	(0.455,0.49]	chr17	1316720	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1:ENST00000580019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	4.63978	4.747725	4.85567	6.94032e-4	1.2429e-7	0.00876781	6.73437e-6
chr1	111126226	111126294	1224032	0	-	0.397059	(0.39,0.42]	chr1	119674	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.3313	4.7473849999999995	5.16347	0.00209984	6.48089e-5	0.0204266	0.00126536
chr1	150811154	150811250	1290608	0	-	0.40625	(0.39,0.42]	chr1	128516	16	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.3313	4.7473849999999995	5.16347	0.00209984	6.48089e-5	0.0204266	0.00126536
chr1	206734183	206734281	683417	0	+	0.397959	(0.39,0.42]	chr1	69024	16	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.3313	4.7473849999999995	5.16347	0.00209984	6.48089e-5	0.0204266	0.00126536
chr9	127691946	127692045	10475571	0	+	0.40404	(0.39,0.42]	chr9	789241	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.3313	4.7473849999999995	5.16347	0.00209984	6.48089e-5	0.0204266	0.00126536
chr1	84501844	84501944	1130766	0	-	0.45	(0.42,0.455]	chr1	112605	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	68	2	3.60661	4.74729	5.88797	4.00386e-6	3.72505e-7	1.28934e-4	1.92638e-5
chr19	52143042	52143140	17381840	0	+	0.530612	(0.53,0.59]	chr19	1445698	1	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	CTC-471J1.9:RPL37P23	ENSG00000268458.1:ENSG00000243680.1	ENST00000597886.1:ENST00000492641.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	162	2	3.87884	4.747005	5.61517	1.11478e-4	1.1765e-12	0.00213212	2.60115e-10
chr2	187464518	187464615	3070144	0	-	0.360825	(0.36,0.39]	chr2	271827	4	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.80225	4.746935000000001	5.69162	1.85308e-4	2.15744e-6	0.00322093	7.62296e-5
chr7	100620856	100620956	8952160	0	-	0.58	(0.53,0.59]	chr7	684151	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	127	2	4.4923	4.74688	5.00146	2.39218e-6	5.06235e-10	9.1799e-5	5.73989e-8
chr6	119189663	119189736	7919428	0	-	0.465753	(0.455,0.49]	chr6	606489	1	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	4.20189	4.74686	5.29183	0.00397662	2.89856e-9	0.0322851	2.64796e-7
chr7	103388910	103389007	8962348	0	-	0.474227	(0.455,0.49]	chr7	685947	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC26A5	ENSG00000170615.15	ENST00000339444.10:ENST00000356767.8:ENST00000393735.6:ENST00000306312.8:ENST00000393730.5:ENST00000445809.5:ENST00000454864.5:ENST00000432958.6:ENST00000354356.8:ENST00000423416.5:ENST00000393729.5:ENST00000456463.5:ENST00000393723.2:ENST00000393727.5:ENST00000487407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	4.50805	4.746755	4.98546	0.00122223	4.25596e-8	0.0135383	2.67971e-6
chr5	10390375	10390437	5875071	0	+	0.548387	(0.53,0.59]	chr5	461937	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	289	2	4.27561	4.746405	5.2172	2.21598e-10	2.46436e-12	2.75817e-8	5.45852e-10
chr7	22621618	22621718	8721413	0	-	0.39	(0.36,0.39]	chr7	665771	485	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1:ENST00000442252.1:ENST00000650428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.74283	4.74611	5.74939	1.50915e-5	1.44783e-6	4.23797e-4	5.46137e-5
chr1	45015398	45015498	174360	0	+	0.53	(0.49,0.53]	chr1	22558	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000652514.1:ENST00000472254.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	124	2	3.79988	4.745675	5.69147	8.90867e-7	7.40634e-11	4.02766e-5	1.04402e-8
chr6	12514284	12514372	7056030	0	+	0.522727	(0.49,0.53]	chr6	540326	3	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	151	2	3.79584	4.7456499999999995	5.69546	4.71827e-8	5.62033e-11	2.9306e-6	8.93405e-9
chr19	34399900	34399936	17300565	0	+	0.472222	(0.455,0.49]	chr19	1429895	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	4.32883	4.74549	5.16215	5.04348e-5	6.31002e-6	0.00113788	1.88287e-4
chr21	43565428	43565519	18135371	0	+	0.582418	(0.53,0.59]	chr21	1538159	2	CDS	CDS:EXON_MRNA	H2BS1	ENSG00000234289.6	ENST00000599962.2	protein_coding	protein_coding	protein_coding	protein_coding	5	183	2	4.64132	4.7452000000000005	4.84908	1.29785e-8	1.01379e-10	9.70419e-7	1.52013e-8
chr3	41239242	41239342	3432625	0	+	0.57	(0.53,0.59]	chr3	298580	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	2.95437	4.74484	6.53531	2.85501e-4	1.20872e-8	0.00456926	9.09817e-7
chr15	55192762	55192833	15292571	0	-	0.338028	(0.33,0.36]	chr15	1207032	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5:ENST00000565854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	4.18665	4.744755	5.30286	1.23392e-5	3.10298e-8	3.58359e-4	2.05188e-6
chr12	49128154	49128252	13323970	0	-	0.581633	(0.53,0.59]	chr12	1045746	2	CDS	CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	437	2	4.00868	4.744435	5.48019	9.01218e-11	1e-12	1.2408e-8	2.46312e-10
chr18	3277837	3277937	16729914	0	+	0.42	(0.39,0.42]	chr18	1380135	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	4.36441	4.744285	5.12416	4.74002e-6	8.52921e-11	1.63674e-4	1.18224e-8
chr16	11350984	11351081	15543385	0	+	0.443299	(0.42,0.455]	chr16	1231099	3	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000576027.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	4.20049	4.74416	5.28783	2.17539e-5	1.49765e-5	5.73422e-4	3.83096e-4
chr13	100857523	100857623	13874652	0	+	0.44	(0.42,0.455]	chr13	1087522	1165	INTRON	INTRON	NALCN-AS1	ENSG00000233009.1	ENST00000457843.1	lncRNA	lncRNA	lncRNA	lncRNA	0	28	2	4.05954	4.744115	5.42869	0.00617886	1.60756e-5	0.0439741	4.07445e-4
chr14	21650075	21650162	14522936	0	-	0.436782	(0.42,0.455]	chr14	1137753	5	EXON_PSEUDO	EXON_PSEUDO	ARL6IP1P1	ENSG00000255664.1	ENST00000545836.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.05954	4.744115	5.42869	0.00617886	1.60756e-5	0.0439741	4.07445e-4
chr20	57374703	57374800	17836821	0	+	0.412371	(0.39,0.42]	chr20	1508316	2	CDS	CDS:UTR3:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	3.38738	4.744065	6.10075	1.35138e-4	1.37224e-7	0.0025017	7.34618e-6
chr1	196690062	196690150	640981	0	+	0.306818	(0.29,0.33]	chr1	64461	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	3.18804	4.743795	6.29955	3.92193e-4	4.11653e-9	0.00539186	3.92438e-7
chr3	197950967	197950978	3992950	0	+	0.454545	(0.42,0.455]	chr3	336598	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	180	2	4.73772	4.743795	4.74987	2.72689e-7	3.22553e-12	1.4763e-5	6.37646e-10
chr19	579577	579656	17188296	0	+	0.658228	(0.59,1]	chr19	1410766	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	470	2	4.42872	4.743565	5.05841	1.45268e-8	6.93789e-11	1.17124e-6	9.83946e-9
chr12	46366863	46366945	13314374	0	-	0.390244	(0.39,0.42]	chr12	1043614	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000612232.1:ENST00000548870.5:ENST00000547252.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	4.53831	4.743335	4.94836	1.30829e-6	5.60845e-8	5.53834e-5	3.39862e-6
chr1	112929091	112929149	1232472	0	-	0.482759	(0.455,0.49]	chr1	120475	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	74	2	4.46858	4.743265	5.01795	2.38087e-6	2.66992e-8	8.3081e-5	1.97197e-6
chr7	130094931	130095031	8528663	0	+	0.27	[0,0.29]	chr7	651068	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.78212	4.743195	5.70427	3.32518e-4	1.20169e-6	0.00506816	4.6687e-5
chr8	123019194	123019249	10055949	0	-	0.4	(0.39,0.42]	chr8	756441	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	4.16663	4.74316	5.31969	2.68682e-5	1.84729e-5	6.19143e-4	5.02409e-4
chr16	21962459	21962516	15586811	0	+	0.508772	(0.49,0.53]	chr16	1235439	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5:ENST00000567597.1:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.67972	4.74301	4.8063	6.94757e-4	1.96248e-7	0.00876781	9.99962e-6
chr22	19724193	19724278	18295921	0	+	0.788235	(0.59,1]	chr22	1552888	5	CDS	CDS:UTR3:EXON_MRNA	SEPT5-GP1BB:SEPTIN5:GP1BB	ENSG00000284874.1:ENSG00000184702.20:ENSG00000203618.6	ENST00000455843.5:ENST00000431044.5:ENST00000470814.1:ENST00000366425.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	209	2	4.49996	4.742925	4.98589	7.55563e-6	1.08481e-8	2.18445e-4	9.1662e-7
chr14	22598055	22598154	14526181	0	-	0.525253	(0.49,0.53]	chr14	1137883	15	EXON_LNCRNA	EXON_LNCRNA	CH17-302M23.1	ENSG00000275552.1	ENST00000612576.1	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	3.94177	4.7428349999999995	5.5439	0.0104929	8.44877e-6	0.063428	2.39255e-4
chr5	173318097	173318173	6984316	0	-	0.578947	(0.53,0.59]	chr5	533807	3	CDS	CDS:EXON_MRNA	STC2	ENSG00000113739.11	ENST00000265087.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	4.44255	4.742765	5.04298	1.91383e-4	3.41603e-6	0.0032874	1.12474e-4
chr6	32168597	32168694	7664645	0	-	0.556701	(0.53,0.59]	chr6	586094	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	139	2	4.37689	4.7427150000000005	5.10854	2.12745e-8	8.67936e-9	1.62119e-6	6.8555e-7
chr19	11449265	11449312	17231266	0	+	0.617021	(0.59,1]	chr19	1419937	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000587290.5:ENST00000592435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	142	2	4.54391	4.742675	4.94144	7.07916e-6	4.87881e-7	2.27834e-4	2.16171e-5
chr17	59676953	59677031	16295405	0	+	0.512821	(0.49,0.53]	chr17	1321703	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	159	2	4.2408	4.74259	5.24438	4.21859e-9	7.01193e-10	4.00158e-7	7.63525e-8
chr14	77511883	77511983	14717355	0	-	0.61	(0.59,1]	chr14	1153348	60	UTR3	UTR3:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.44671	4.7425250000000005	5.03834	0.00931497	0.00108238	0.0586162	0.0118355
chr6	7281938	7282038	7586811	0	-	0.53	(0.49,0.53]	chr6	578692	9	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	3.61536	4.74247	5.86958	3.77921e-6	7.54524e-7	1.22746e-4	3.49213e-5
chr7	137763098	137763198	9096178	0	-	0.4	(0.39,0.42]	chr7	694009	727	INTRON	INTRON	DGKI	ENSG00000157680.16	ENST00000614521.2:ENST00000453654.6:ENST00000424189.6:ENST00000446122.5:ENST00000288490.9:ENST00000470895.5:ENST00000483619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	4.16663	4.742419999999999	5.31821	1.84729e-5	2.16023e-9	5.02409e-4	2.06314e-7
chr1	156293143	156293209	1313971	0	-	0.621212	(0.59,1]	chr1	133368	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GLMP	ENSG00000198715.13	ENST00000461597.1:ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000482579.1:ENST00000481050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.47517	4.74231	5.00945	0.00735659	0.00149725	0.0491503	0.0159607
chr12	49269541	49269614	12865679	0	+	0.561644	(0.53,0.59]	chr12	999052	2	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	141	2	3.76445	4.741995	5.71954	1.34475e-6	9.39103e-11	5.6532e-5	1.28737e-8
chr1	201007181	201007280	1445389	0	-	0.515152	(0.49,0.53]	chr1	144921	11	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.23759	4.74169	5.24579	0.00436474	4.073e-5	0.0335517	9.64741e-4
chr19	49430145	49430238	17606394	0	-	0.505376	(0.49,0.53]	chr19	1483928	9	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.47167	4.741645	6.01162	6.95049e-5	3.55916e-7	0.00147069	1.64926e-5
chr11	5268597	5268697	12240764	0	-	0.33	(0.29,0.33]	chr11	946111	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000396895.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	4.20972	4.741085	5.27245	3.5038e-7	2.75134e-9	1.63119e-5	2.7589e-7
chr1	159095475	159095575	1323988	0	-	0.52	(0.49,0.53]	chr1	135355	138	INTRON	INTRON	AIM2	ENSG00000163568.15	ENST00000368129.3:ENST00000411768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.28332	4.741075	5.19883	0.00338762	6.30063e-5	0.0288632	0.00124286
chr5	25910849	25910945	5910421	0	+	0.520833	(0.49,0.53]	chr5	463553	15	EXON_PSEUDO	EXON_PSEUDO	MSNP1	ENSG00000251593.1	ENST00000511640.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.28332	4.741075	5.19883	0.00338762	6.30063e-5	0.0288632	0.00124286
chr6	89084019	89084096	7271490	0	+	0.415584	(0.39,0.42]	chr6	560636	3	CDS	CDS:EXON_MRNA	PNRC1	ENSG00000146278.11	ENST00000336032.4:ENST00000369472.1:ENST00000354922.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.49324	4.740745	4.98825	0.00108192	1.62756e-4	0.0124943	0.00266622
chr18	23672648	23672748	17038495	0	-	0.46	(0.455,0.49]	chr18	1400725	5	EXON_PSEUDO	EXON_PSEUDO	RPS10P27	ENSG00000267752.1	ENST00000586795.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.50805	4.740315	4.97258	0.00122223	1.84876e-4	0.0135383	0.00296795
chr3	152455541	152455577	3818428	0	+	0.472222	(0.455,0.49]	chr3	325686	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.50805	4.740315	4.97258	0.00122223	1.84876e-4	0.0135383	0.00296795
chr3	155931764	155931822	3824597	0	+	0.465517	(0.455,0.49]	chr3	326219	1	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.50805	4.740315	4.97258	0.00122223	1.84876e-4	0.0135383	0.00296795
chrX	53546703	53546764	19077307	0	-	0.47541	(0.455,0.49]	chrX	1622700	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.50805	4.740315	4.97258	0.00122223	1.84876e-4	0.0135383	0.00296795
chr1	42929872	42929953	967015	0	-	0.62963	(0.59,1]	chr1	101883	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000669445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	370	2	4.26616	4.73982	5.21348	1.94435e-7	1.0929e-10	1.11053e-5	1.46651e-8
chr1	202941294	202941386	1453183	0	-	0.543478	(0.53,0.59]	chr1	146051	6	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	222	2	3.98962	4.73982	5.49002	2.29235e-6	1e-12	8.86852e-5	2.25522e-10
chr14	22875631	22875724	14175059	0	+	0.666667	(0.59,1]	chr14	1110443	4	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000553002.1:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	3.98751	4.739675	5.49184	0.0301044	1.61513e-4	0.129773	0.00265627
chr15	90190682	90190782	15098139	0	+	0.5	(0.49,0.53]	chr15	1187725	2	SS5_PROX	SS5_PROX:INTRON	SEMA4B	ENSG00000185033.14	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	4.20376	4.739265	5.27477	4.14521e-5	1.43152e-5	8.8376e-4	4.04062e-4
chr3	128625593	128625653	4441360	0	-	0.633333	(0.59,1]	chr3	368997	2	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	2	141	2	4.68441	4.738709999999999	4.79301	2.49298e-6	1.60221e-6	8.66637e-5	6.53758e-5
chr3	14468087	14468149	3320654	0	+	0.5	(0.49,0.53]	chr3	292249	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	4.35855	4.738615	5.11868	9.66505e-5	5.06834e-6	0.00175267	1.7169e-4
chr2	112652701	112652798	2001808	0	+	0.453608	(0.42,0.455]	chr2	190022	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1:ENST00000492076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	135	2	3.4956	4.7385	5.9814	2.03372e-6	3.61056e-12	8.03155e-5	7.06086e-10
chr12	46197989	46198060	13313535	0	-	0.352113	(0.33,0.36]	chr12	1043482	2	CDS	CDS:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000548979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.97592	4.738385	6.50085	4.1482e-4	2.75564e-9	0.00607555	2.54269e-7
chrX	48598841	48598899	18692377	0	+	0.758621	(0.59,1]	chrX	1594223	1	CDS	CDS:UTR3:EXON_MRNA	WDR13	ENSG00000101940.18	ENST00000376729.10:ENST00000218056.9:ENST00000498631.5:ENST00000486125.5:ENST00000492715.1:ENST00000479279.5:ENST00000466962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	3.84557	4.73821	5.63085	0.0410704	8.43355e-5	0.163285	0.0015859
chrX	153470457	153470557	19272985	0	-	0.71	(0.59,1]	chrX	1637212	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TREX2:HAUS7	ENSG00000183479.13:ENSG00000213397.12	ENST00000330912.7:ENST00000334497.7:ENST00000338525.7:ENST00000370232.4:ENST00000370211.10:ENST00000490165.5:ENST00000490453.5:ENST00000464993.1:ENST00000370210.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	3.84557	4.73821	5.63085	0.0410704	8.43355e-5	0.163285	0.0015859
chr1	20652378	20652478	882242	0	-	0.55	(0.53,0.59]	chr1	91111	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	8	244	2	3.87157	4.738145	5.60472	1.01312e-8	1.30984e-12	8.6302e-7	2.86149e-10
chr16	2770910	2770936	15494993	0	+	0.576923	(0.53,0.59]	chr16	1227821	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000574866.1:ENST00000573692.1:ENST00000570539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.43279	4.737885	5.04298	0.0026472	1.91383e-4	0.0231864	0.0032874
chr1	31633236	31633314	919057	0	-	0.576923	(0.53,0.59]	chr1	96308	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PEF1	ENSG00000162517.13	ENST00000373703.5:ENST00000461006.5:ENST00000478502.5:ENST00000489164.5:ENST00000492061.5:ENST00000496805.5:ENST00000472443.1:ENST00000471219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr1	119734706	119734766	432647	0	+	0.55	(0.53,0.59]	chr1	42788	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000641213.1:ENST00000641947.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641371.1:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1:ENST00000469443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr19	10274852	10274940	17224533	0	+	0.534091	(0.53,0.59]	chr19	1418484	2	CDS	CDS:EXON_MRNA:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000588645.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr19	18177848	18177911	17257716	0	+	0.555556	(0.53,0.59]	chr19	1425251	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr19	42297177	42297271	17573682	0	-	0.553191	(0.53,0.59]	chr19	1477760	1	CDS	CDS:EXON_MRNA	PAFAH1B3	ENSG00000079462.8	ENST00000538771.5:ENST00000262890.8:ENST00000594989.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr3	49532715	49532811	3460755	0	+	0.583333	(0.53,0.59]	chr3	302127	21	CDS	CDS:EXON_MRNA	DAG1	ENSG00000173402.12	ENST00000515359.6:ENST00000538711.5:ENST00000539901.5:ENST00000541308.5:ENST00000545947.5:ENST00000308775.7:ENST00000673708.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr4	13338302	13338390	4721292	0	+	0.579545	(0.53,0.59]	chr4	391943	1	EXON_PSEUDO	EXON_PSEUDO	HSP90AB2P	ENSG00000205940.8	ENST00000507090.2	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	0	28	2	4.43863	4.73784	5.03705	0.00254763	0.00020199200000000001	0.0233955	0.00317801
chr1	52772466	52772557	1020668	0	-	0.483516	(0.455,0.49]	chr1	105869	4	EXON_PSEUDO	EXON_PSEUDO	RPS13P2	ENSG00000228929.1	ENST00000437890.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	259	2	4.1462	4.737695	5.32919	1.29508e-9	1e-12	1.42824e-7	2.25522e-10
chr12	75688693	75688793	13420703	0	-	0.35	(0.33,0.36]	chr12	1056541	570	INTRON	INTRON	RP11-114H23.1	ENSG00000258077.2	ENST00000552856.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	4.03706	4.737690000000001	5.43832	5.18043e-5	5.33271e-10	0.00115752	6.0171e-8
chr6	10730942	10731034	7048624	0	+	0.423913	(0.42,0.455]	chr6	539767	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	104	2	4.55396	4.737445	4.92093	1.1523e-6	7.14218e-10	4.9483e-5	7.76254e-8
chr12	110343366	110343434	13085878	0	+	0.529412	(0.49,0.53]	chr12	1020538	3	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	231	2	4.08384	4.737220000000001	5.3906	9.87028e-7	1e-12	4.38926e-5	2.25522e-10
chrX	115718842	115718941	19185326	0	-	0.383838	(0.36,0.39]	chrX	1631181	53	INTRON	INTRON	DANT2	ENSG00000235244.4	ENST00000664453.1	lncRNA	lncRNA	lncRNA	lncRNA	3	83	2	4.50152	4.7371099999999995	4.9727	3.69398e-8	2.95456e-8	2.61905e-6	1.96716e-6
chr19	39488138	39488217	17326797	0	+	0.582278	(0.53,0.59]	chr19	1435089	2	CDS	CDS:UTR3:EXON_MRNA	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000602265.5:ENST00000595961.5:ENST00000597552.1:ENST00000601252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	4.27526	4.737045	5.19883	8.7034e-5	1.03921e-5	0.00177086	2.85526e-4
chr1	46892234	46892333	181179	0	+	0.434343	(0.42,0.455]	chr1	23607	7	EXON_PSEUDO	EXON_PSEUDO	TUBAP8	ENSG00000238145.2	ENST00000437364.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	52	2	4.67981	4.736995	4.79418	5.38444e-4	2.10099e-7	0.00744072	1.05955e-5
chr17	35861376	35861471	16520248	0	-	0.4	(0.39,0.42]	chr17	1351239	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	HEATR9:AC015849.14	ENSG00000270379.6:ENSG00000271268.1	ENST00000604400.5:ENST00000604834.6:ENST00000603870.5:ENST00000603323.5:ENST00000605080.5:ENST00000603852.5:ENST00000605454.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	1	54	2	4.49324	4.736835	4.98043	0.00108192	4.28317e-8	0.0124943	2.69344e-6
chr20	45902439	45902521	17987676	0	-	0.585366	(0.53,0.59]	chr20	1524195	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	4	137	2	4.268	4.73676	5.20552	2.25977e-8	9.38906e-9	1.56738e-6	8.04728e-7
chr15	42531471	42531530	14892398	0	+	0.40678	(0.39,0.42]	chr15	1170512	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5:ENST00000563333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	4.70138	4.73622	4.77106	3.03764e-4	4.11166e-7	0.00472028	1.87588e-5
chr3	141903649	141903748	3789959	0	+	0.494949	(0.49,0.53]	chr3	323463	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	163	2	4.53853	4.736215	4.9339	2.25359e-8	2.82293e-11	1.69626e-6	4.40264e-9
chr7	56074660	56074736	8290679	0	+	0.644737	(0.59,1]	chr7	631546	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000529457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.4902	4.7361	5.982	0.00130379	1.42041e-5	0.0142445	3.66887e-4
chr4	87893521	87893619	4942251	0	+	0.428571	(0.42,0.455]	chr4	406011	18	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	63	2	3.36019	4.73558	6.11097	2.44137e-5	1.55657e-7	6.30952e-4	8.1934e-6
chr12	110334011	110334077	13085775	0	+	0.454545	(0.42,0.455]	chr12	1020512	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.05889	4.735365	6.41184	0.00524205	1.42035e-8	0.0399155	1.0503e-6
chr4	17624970	17625068	4734396	0	+	0.5	(0.49,0.53]	chr4	392802	13	UTR3	UTR3:EXON_MRNA:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	3.55094	4.735145	5.91935	1.33508e-6	5.27035e-7	5.11797e-5	2.57927e-5
chr1	89933564	89933663	349099	0	+	0.323232	(0.29,0.33]	chr1	34169	5	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.31614	4.734915	6.15369	3.2999e-4	4.2389e-8	0.00504024	2.67186e-6
chr12	18196116	18196216	13231488	0	-	0.52	(0.49,0.53]	chr12	1037450	525	INTRON	INTRON	RERGL	ENSG00000111404.7	ENST00000540148.5:ENST00000541632.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	28	2	4.12263	4.7347649999999994	5.3469	0.00591451	2.75121e-5	0.0427941	6.30607e-4
chr12	56130581	56130623	12898256	0	+	0.5	(0.49,0.53]	chr12	1004208	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4:ENST00000550986.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.12263	4.7347649999999994	5.3469	0.00591451	2.75121e-5	0.0427941	6.30607e-4
chr16	57460897	57460988	15684372	0	+	0.505495	(0.49,0.53]	chr16	1247647	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	COQ9	ENSG00000088682.14	ENST00000262507.11:ENST00000567072.5:ENST00000563166.1:ENST00000569980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.12263	4.7347649999999994	5.3469	0.00591451	2.75121e-5	0.0427941	6.30607e-4
chr16	70985722	70985822	16002303	0	-	0.45	(0.42,0.455]	chr16	1285466	4	SS3_PROX	SS3_PROX:INTRON	HYDIN	ENSG00000157423.18	ENST00000393567.7:ENST00000393552.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	3.8515	4.73432	5.61714	0.0119089	4.98624e-6	0.0686664	1.54467e-4
chr7	103495810	103495898	8963199	0	-	0.431818	(0.42,0.455]	chr7	686089	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	3.8515	4.73432	5.61714	0.0119089	4.98624e-6	0.0686664	1.54467e-4
chr13	100151004	100151092	14125399	0	-	0.556818	(0.53,0.59]	chr13	1105803	7	EXON_PSEUDO	EXON_PSEUDO	RPL15P18	ENSG00000228501.2	ENST00000432924.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	115	2	4.49053	4.733955	4.97738	6.2332e-8	4.67404e-8	4.11618e-6	2.90468e-6
chr1	161362440	161362540	500106	0	+	0.4	(0.39,0.42]	chr1	54184	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	4.007	4.733924999999999	5.46085	5.81708e-6	1.77795e-6	1.921e-4	6.48503e-5
chr12	96901462	96901551	13487508	0	-	0.41573	(0.39,0.42]	chr12	1060753	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P33	ENSG00000258846.1	ENST00000554413.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	56	2	4.007	4.733924999999999	5.46085	5.81708e-6	1.77795e-6	1.921e-4	6.48503e-5
chr4	73091242	73091338	5466123	0	-	0.489583	(0.455,0.49]	chr4	437754	7	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.41726	4.733685	6.05011	1.55075e-5	1.27868e-7	3.95473e-4	7.7505e-6
chr2	86144452	86144538	2772781	0	-	0.476744	(0.455,0.49]	chr2	246309	2	CDS	CDS:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	4.21963	4.733435	5.24724	3.09759e-5	3.43063e-7	7.62166e-4	1.6072e-5
chr1	84645176	84645274	1131603	0	-	0.397959	(0.39,0.42]	chr1	112678	16	UTR3	UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.93996	4.73311	5.52626	0.00841622	7.67816e-6	0.054565	2.20857e-4
chr9	22747788	22747877	10225702	0	+	0.41573	(0.39,0.42]	chr9	768477	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01239:CLIC4P1	ENSG00000234840.2:ENSG00000236739.3	ENST00000436786.1:ENST00000453177.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	28	2	3.93996	4.73311	5.52626	0.00841622	7.67816e-6	0.054565	2.20857e-4
chr18	12325936	12326030	16762281	0	+	0.585106	(0.53,0.59]	chr18	1382538	8	CDS	CDS:UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000590967.5:ENST00000591208.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.02054	4.73286	6.44518	0.00577011	2.49042e-8	0.0426551	1.70299e-6
chr20	37203884	37203960	17777609	0	+	0.592105	(0.59,1]	chr20	1502018	1	CDS	CDS:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	252	2	4.3802	4.732805000000001	5.08541	6.94175e-7	3.53083e-9	3.26417e-5	3.1513e-7
chr2	101777421	101777521	1958377	0	+	0.56	(0.53,0.59]	chr2	186008	785	INTRON	INTRON	MAP4K4	ENSG00000071054.16	ENST00000427603.5:ENST00000350878.8:ENST00000350198.8:ENST00000324219.8:ENST00000425019.5:ENST00000302217.9:ENST00000625522.2:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000627726.2:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.00393	4.732785	5.46164	0.0108084	2.11519e-5	0.064368	5.06522e-4
chr20	18548689	18548770	17719767	0	+	0.555556	(0.53,0.59]	chr20	1495727	2	CDS	CDS:EXON_MRNA	SEC23B	ENSG00000101310.17	ENST00000336714.8:ENST00000262544.6:ENST00000643747.1:ENST00000650089.1:ENST00000377465.6:ENST00000422877.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.00393	4.732785	5.46164	0.0108084	2.11519e-5	0.064368	5.06522e-4
chr10	73765519	73765589	11115805	0	+	0.471429	(0.455,0.49]	chr10	845877	2	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.0204	4.73261	5.44482	0.00736097	1.36044e-5	0.0490627	3.54469e-4
chr21	23390257	23390349	18074523	0	+	0.48913	(0.455,0.49]	chr21	1532748	1	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P1	ENSG00000223822.2	ENST00000447052.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.0204	4.73261	5.44482	0.00736097	1.36044e-5	0.0490627	3.54469e-4
chr3	52256306	52256404	4182618	0	-	0.377551	(0.36,0.39]	chr3	352627	20	UTR3	UTR3:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.5987	4.732365	4.86603	9.0208e-4	1.68962e-4	0.0102618	0.00297945
chr12	49761703	49761779	12869257	0	+	0.381579	(0.36,0.39]	chr12	999638	1	CDS	CDS:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000547013.1:ENST00000550040.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	471	2	4.31154	4.73154	5.15154	2.00442e-10	1e-12	2.79485e-8	2.25522e-10
chr22	17598193	17598288	18423822	0	-	0.452632	(0.42,0.455]	chr22	1569472	1	CDS	CDS:EXON_MRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	3.74859	4.73143	5.71427	1.15347e-5	1.33053e-6	3.09736e-4	5.6008e-5
chr2	10124783	10124850	1628992	0	+	0.298507	(0.29,0.33]	chr2	161716	2	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.24387	4.731115	5.21836	0.00263476	3.15783e-5	0.0239118	7.02218e-4
chr20	6215084	6215183	17665995	0	+	0.313131	(0.29,0.33]	chr20	1493650	15	EXON_PSEUDO	EXON_PSEUDO	RP4-775C13.1	ENSG00000234241.1	ENST00000434910.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.24387	4.731115	5.21836	0.00263476	3.15783e-5	0.0239118	7.02218e-4
chr10	74118668	74118767	11117654	0	+	0.575758	(0.53,0.59]	chr10	846311	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	3.25217	4.73108	6.20999	4.79919e-5	1.51461e-7	0.00109351	8.00634e-6
chr1	244487854	244487953	802321	0	+	0.333333	(0.33,0.36]	chr1	79908	77	INTRON	INTRON	CATSPERE	ENSG00000179397.18	ENST00000473875.5:ENST00000366534.9:ENST00000366531.7:ENST00000460986.5:ENST00000366533.8:ENST00000478554.5:ENST00000428042.1:ENST00000464170.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.1284	4.73092	5.33344	0.00407303	1.82386e-5	0.0324137	4.52248e-4
chr1	186334393	186334463	1411938	0	-	0.514286	(0.49,0.53]	chr1	142846	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.4279	4.730855	5.03381	0.00196987	1.49689e-4	0.0193972	0.0024973
chr20	43715133	43715208	17794515	0	+	0.52	(0.49,0.53]	chr20	1504257	1	CDS	CDS:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.4279	4.730855	5.03381	0.00196987	1.49689e-4	0.0193972	0.0024973
chr9	7040374	7040474	10175811	0	+	0.38	(0.36,0.39]	chr9	766432	241	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.16143	4.73083	5.30023	0.00486719	1.38946e-5	0.0366328	3.94563e-4
chr1	11055780	11055853	859089	0	-	0.630137	(0.59,1]	chr1	86766	1	CDS	CDS:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000376957.7:ENST00000490101.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.2353	4.730395	5.22549	0.0165254	5.13843e-4	0.0873033	0.00665221
chr11	125584502	125584593	12194219	0	+	0.373626	(0.36,0.39]	chr11	940681	10	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000278903.11	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.27479	4.730335	6.18588	5.51752e-5	5.43608e-8	0.00122694	3.31855e-6
chr7	127929187	127929258	8517728	0	+	0.492958	(0.49,0.53]	chr7	649751	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	196	2	4.48557	4.729945	4.97432	3.59269e-8	1.806e-12	2.56668e-6	3.83028e-10
chr14	58260947	58261020	14311363	0	+	0.438356	(0.42,0.455]	chr14	1118505	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.52659	4.729885	5.93318	6.87022e-4	5.79703e-7	0.00876781	2.50873e-5
chr1	161518048	161518148	500530	0	+	0.48	(0.455,0.49]	chr1	54250	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5:ENST00000537821.2:ENST00000461298.1:ENST00000459885.1:ENST00000486608.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	113	2	4.28007	4.7298100000000005	5.17955	8.3464e-6	5.17137e-11	2.58924e-4	7.56478e-9
chr7	44581065	44581165	8800244	0	-	0.51	(0.49,0.53]	chr7	671341	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	59	2	3.80825	4.72977	5.65129	7.68944e-6	3.38975e-6	2.20857e-4	1.23071e-4
chr2	74880264	74880340	1893312	0	+	0.631579	(0.59,1]	chr2	179602	1	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.7151	4.72944	4.74378	0.00412279	0.00312942	0.0325842	0.0264364
chrX	143431941	143432041	18893205	0	+	0.47	(0.455,0.49]	chrX	1609099	438	INTRON	INTRON	GS1-256O22.5	ENSG00000227303.1	ENST00000431432.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.9967	4.72921	6.46172	0.00650423	8.23018e-9	0.0454205	6.55711e-7
chr18	6462531	6462626	17007687	0	-	0.557895	(0.53,0.59]	chr18	1397496	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	49	2	3.87884	4.729075	5.57931	1.11478e-4	1.05602e-5	0.00213212	2.89015e-4
chr1	156136920	156136978	486146	0	+	0.534483	(0.53,0.59]	chr1	51292	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	185	2	4.6384	4.72896	4.81952	8.42977e-7	1.62145e-11	3.83773e-5	2.68483e-9
chr1	111120515	111120604	1223971	0	-	0.449438	(0.42,0.455]	chr1	119654	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000477588.5:ENST00000477769.1:ENST00000480600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	4.4415	4.72856	5.01562	1.01971e-4	2.94164e-6	0.0019861	9.91141e-5
chr7	130185191	130185279	9063340	0	-	0.5	(0.49,0.53]	chr7	692179	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	4.29131	4.72844	5.16557	6.36135e-5	1.4456e-8	0.00136069	1.06672e-6
chr1	19241078	19241142	877376	0	-	0.5625	(0.53,0.59]	chr1	90517	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	6	171	2	3.92798	4.728059999999999	5.52814	1.79555e-8	5.58677e-10	1.39784e-6	6.25722e-8
chr2	219222778	219222846	3191311	0	-	0.558824	(0.53,0.59]	chr2	280870	3	CDS	CDS:UTR3:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000429920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	3.61856	4.7279350000000004	5.8373100000000004	0.0303021	2.06883e-6	0.129773	7.35008e-5
chr19	48391267	48391358	17601759	0	-	0.56044	(0.53,0.59]	chr19	1482739	1	CDS_START	CDS_START:CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000600980.1:ENST00000599084.1:ENST00000594643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	391	2	4.38021	4.727895	5.07558	2.43415e-10	1.13887e-12	3.32305e-8	2.52594e-10
chr9	120781620	120781719	10833716	0	-	0.353535	(0.33,0.36]	chr9	820448	27	INTRON	INTRON	FBXW2	ENSG00000119402.18	ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.36878	4.727665	5.08655	0.0021194	4.6453e-5	0.0198008	0.00106753
chr8	37753964	37754015	9290034	0	+	0.372549	(0.36,0.39]	chr8	710373	2	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000519638.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.42503	4.727615	5.0302	0.00133228	1.15931e-4	0.0144372	0.00204552
chr6	143503912	143503997	8005327	0	-	0.505882	(0.49,0.53]	chr6	611763	1	CDS	CDS:EXON_MRNA:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	4.37423	4.72742	5.08061	1.00361e-4	4.77238e-6	0.00196575	1.49327e-4
chr11	126265029	126265100	12645158	0	-	0.633803	(0.59,1]	chr11	981836	2	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000531104.1:ENST00000527817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.11672	4.72736	5.338	0.0222273	3.196e-4	0.105595	0.00457916
chr2	32947621	32947719	1718287	0	+	0.846939	(0.59,1]	chr2	168628	3	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.11672	4.72736	5.338	0.0222273	3.196e-4	0.105595	0.00457916
chrX	53431987	53432051	19077097	0	-	0.609375	(0.59,1]	chrX	1622611	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B10	ENSG00000072506.14	ENST00000375304.9:ENST00000684251.1:ENST00000477706.1:ENST00000168216.11:ENST00000684692.1:ENST00000375298.4:ENST00000682365.1:ENST00000495986.2:ENST00000684503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.11672	4.72736	5.338	0.0222273	3.196e-4	0.105595	0.00457916
chr1	193091467	193091550	631234	0	+	0.313253	(0.29,0.33]	chr1	64150	4	SS3_PROX	SS3_PROX:INTRON	RO60	ENSG00000116747.13	ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.24933	4.727304999999999	5.20528	2.18753e-5	1.02924e-5	5.75389e-4	2.83837e-4
chr7	72618135	72618234	8849556	0	-	0.373737	(0.36,0.39]	chr7	675303	9	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.46714	4.727285	4.98743	0.00155822	8.82225e-5	0.0156889	0.00178337
chr8	125011536	125011632	9595483	0	+	0.458333	(0.455,0.49]	chr8	727924	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000520493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	160	2	4.36257	4.727185	5.0918	9.64791e-8	4.6001e-12	6.05525e-6	8.75555e-10
chr5	14652436	14652535	6462535	0	-	0.474747	(0.455,0.49]	chr5	502940	6	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	142	2	3.55656	4.727085000000001	5.89761	3.4361e-7	7.8233e-12	1.80057e-5	1.39826e-9
chr7	30621392	30621446	8203774	0	+	0.462963	(0.455,0.49]	chr7	625837	1	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	4.16204	4.726935	5.29183	1.83061e-5	2.89856e-9	4.99708e-4	2.64796e-7
chr6	26043466	26043557	7646941	0	-	0.516484	(0.49,0.53]	chr6	582498	2	CDS	CDS:EXON_MRNA	H2BC3	ENSG00000276410.4	ENST00000615966.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	4.46303	4.726685	4.99034	1.6002e-4	2.57025e-6	0.00286408	8.8687100000000007e-05
chr15	43131492	43131589	14894426	0	+	0.453608	(0.42,0.455]	chr15	1170755	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	TMEM62:SPCS2P1	ENSG00000137842.7:ENSG00000260928.2	ENST00000564698.5:ENST00000561636.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	26	2	4.24133	4.7265999999999995	5.21187	0.00326918	5.5797e-5	0.0282494	0.00112719
chr16	80938560	80938660	16052676	0	-	0.43	(0.42,0.455]	chr16	1289076	460	INTRON	INTRON	RP11-314O13.2	ENSG00000286221.1	ENST00000651611.1:ENST00000652210.1:ENST00000650881.1:ENST00000651567.1:ENST00000652621.1:ENST00000650780.1:ENST00000651816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.24133	4.7265999999999995	5.21187	0.00326918	5.5797e-5	0.0282494	0.00112719
chr5	83054224	83054323	6673219	0	-	0.434343	(0.42,0.455]	chr5	515109	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.24133	4.7265999999999995	5.21187	0.00326918	5.5797e-5	0.0282494	0.00112719
chr8	43129895	43129993	9308573	0	+	0.438776	(0.42,0.455]	chr8	712880	72	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.24133	4.7265999999999995	5.21187	0.00326918	5.5797e-5	0.0282494	0.00112719
chr5	10282196	10282288	6446914	0	-	0.358696	(0.33,0.36]	chr5	502171	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CMBL	ENSG00000164237.9	ENST00000503834.1:ENST00000296658.4:ENST00000510532.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	4.6856	4.726425	4.76725	3.92435e-4	2.19655e-7	0.00583618	1.09665e-5
chr5	115625600	115625692	6777106	0	-	0.576087	(0.53,0.59]	chr5	519929	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000456936.4:ENST00000503010.1:ENST00000508420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	3.2425	4.7262450000000005	6.20999	2.6381e-4	1.51461e-7	0.00427022	8.00634e-6
chr1	236483739	236483839	769256	0	+	0.52	(0.49,0.53]	chr1	77526	12	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	2	97	2	3.76099	4.72623	5.69147	2.00194e-4	7.40634e-11	0.0034021	1.04402e-8
chr1	21851790	21851858	890942	0	-	0.617647	(0.59,1]	chr1	92378	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	95	2	2.97653	4.726125	6.47572	0.00142722	8.33464e-7	0.0153442	3.41653e-5
chr2	41820479	41820570	1759271	0	+	0.516484	(0.49,0.53]	chr2	170657	9	EXON_PSEUDO	EXON_PSEUDO	LDHAP3	ENSG00000236090.2	ENST00000448312.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	3.73494	4.726075	5.71721	0.0189345	2.77472e-6	0.0934721	9.47025e-5
chr15	89188247	89188303	15093367	0	+	0.482143	(0.455,0.49]	chr15	1187080	2	CDS	CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000568308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.65079	4.7254000000000005	5.80001	3.61776e-4	1.35407e-6	0.00544764	5.16241e-5
chr6	26546836	26546933	7102841	0	+	0.28866000000000003	[0,0.29]	chr6	543213	15	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.68315	4.72517	5.76719	4.43021e-5	7.60108e-7	0.00102532	3.16567e-5
chrX	101412567	101412663	18786564	0	+	0.572917	(0.53,0.59]	chrX	1601436	6	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.39416	4.725125	6.05609	0.00126006	4.62627e-7	0.013837	2.06661e-5
chr1	65605037	65605137	253355	0	+	0.39	(0.36,0.39]	chr1	28843	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	3.89273	4.72494	5.55715	2.50226e-6	6.93625e-8	9.53193e-5	4.08152e-6
chr1	268741	268816	820361	0	-	0.44	(0.42,0.455]	chr1	81285	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP006222.1	ENSG00000228463.10	ENST00000448958.2:ENST00000441866.2:ENST00000634344.2:ENST00000424587.7	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	4.40276	4.72478	5.0468	0.0017618	1.33918e-4	0.0180053	0.00229039
chr11	67399612	67399665	12427604	0	-	0.45283	(0.42,0.455]	chr11	965295	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.40276	4.72478	5.0468	0.0017618	1.33918e-4	0.0180053	0.00229039
chr17	62516409	62516498	16629950	0	-	0.629214	(0.59,1]	chr17	1367140	2	EXON_PSEUDO	EXON_PSEUDO	RP11-464D20.2	ENSG00000239246.3	ENST00000460492.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	91	2	3.3027	4.724715	6.14673	2.94605e-4	8.58437e-6	0.00432147	2.65793e-4
chr14	81246294	81246383	14730801	0	-	0.41573	(0.39,0.42]	chr14	1154054	1	EXON_PSEUDO	EXON_PSEUDO	DYNLL1P1	ENSG00000205579.3	ENST00000595442.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.55723	4.724705	4.89218	0.00117753	1.6518e-4	0.0127276	0.0029267300000000002
chr1	19242344	19242408	877390	0	-	0.5625	(0.53,0.59]	chr1	90523	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	4.5672	4.724465	4.88173	1.40998e-6	1.36047e-7	5.86085e-5	7.30332e-6
chr11	65340965	65341019	11984017	0	+	0.648148	(0.59,1]	chr11	920265	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000444314.6:ENST00000415073.6:ENST00000530993.5:ENST00000252268.8:ENST00000524666.5:ENST00000532264.5:ENST00000532102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.34487	4.724165	5.10346	0.0123678	8.40506e-4	0.0705839	0.00981548
chr17	42192905	42192966	16546586	0	-	0.655738	(0.59,1]	chr17	1357126	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GHDC	ENSG00000167925.16	ENST00000593209.5:ENST00000587427.6:ENST00000414034.7:ENST00000301671.12:ENST00000428494.6:ENST00000588762.5:ENST00000590249.5:ENST00000588352.5:ENST00000586692.5:ENST00000590520.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.34487	4.724165	5.10346	0.0123678	8.40506e-4	0.0705839	0.00981548
chr11	65115475	65115536	11982468	0	+	0.590164	(0.59,1]	chr11	919886	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TM7SF2	ENSG00000149809.17	ENST00000526809.5:ENST00000279263.14:ENST00000529601.5:ENST00000345348.9:ENST00000531321.5:ENST00000529292.5:ENST00000530650.5:ENST00000529233.5:ENST00000527968.5:ENST00000528802.1:ENST00000526048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.37323	4.72388	5.07453	0.00990413	0.00117617	0.061536	0.0132131
chr19	581214	581314	17188317	0	+	0.67	(0.59,1]	chr19	1410775	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.37323	4.72388	5.07453	0.00990413	0.00117617	0.061536	0.0132131
chr3	196068031	196068130	4663340	0	-	0.363636	(0.36,0.39]	chr3	385613	1	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	558	2	4.37518	4.72386	5.07254	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	37203848	37203948	1742664	0	+	0.37	(0.36,0.39]	chr2	169570	21	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000392061.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.24194	4.72375	5.20556	0.00276729	4.46552e-5	0.0247437	9.34801e-4
chr1	116393626	116393723	423840	0	+	0.608247	(0.59,1]	chr1	41801	2	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	6	504	2	2.83882	4.723715	6.60861	3.31383e-4	1e-12	0.00505787	2.25522e-10
chrX	136874381	136874452	19250717	0	-	0.549296	(0.53,0.59]	chrX	1635448	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.94125	4.7235700000000005	6.50589	0.0012261800000000001	1.53327e-8	0.0135648	1.12074e-6
chr19	3605636	3605734	17427987	0	-	0.44898	(0.42,0.455]	chr19	1454174	46	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.64624	4.72344	4.80064	8.75333e-4	3.0479e-4	0.0101169	0.00472028
chrX	44924584	44924684	18678512	0	+	0.46	(0.455,0.49]	chrX	1592595	502	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.65545	4.72344	5.79143	3.50134e-4	8.96581e-7	0.0049086	4.03386e-5
chr17	1650658	1650758	16401259	0	-	0.53	(0.49,0.53]	chr17	1334822	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	4.54207	4.723380000000001	4.90469	1.36824e-6	8.91237e-8	5.72609e-5	5.05835e-6
chr1	19257832	19257908	85463	0	+	0.5	(0.49,0.53]	chr1	9636	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRTO4	ENSG00000053372.5	ENST00000330263.5:ENST00000479559.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	4.1249	4.723345	5.32179	2.63311e-5	2.4461e-5	6.73425e-4	5.72214e-4
chr1	89933960	89934059	349103	0	+	0.353535	(0.33,0.36]	chr1	34169	9	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.03706	4.723305	5.40955	5.18043e-5	1.14206e-5	0.00115752	3.08108e-4
chr20	5100790	5100890	17887647	0	-	0.48	(0.455,0.49]	chr20	1514036	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	4.1185600000000004	4.723075	5.32759	2.49433e-5	1.92345e-5	5.8178e-4	5.18397e-4
chr14	73246817	73246880	14698709	0	-	0.47619	(0.455,0.49]	chr14	1150968	1	EXON_SMALL	EXON_SMALL	RNU6-419P	ENSG00000252839.1	ENST00000517030.1	snRNA	snRNA	snRNA	snRNA	0	30	2	3.81275	4.723035	5.63332	0.0138827	4.15159e-6	0.0760883	1.32627e-4
chr6	112149535	112149635	7900587	0	-	0.49	(0.455,0.49]	chr6	605158	8	INTRON	INTRON	LAMA4	ENSG00000112769.20	ENST00000230538.12:ENST00000389463.9:ENST00000522006.5:ENST00000651860.1:ENST00000424408.6:ENST00000523765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	3.81275	4.723035	5.63332	0.0138827	4.15159e-6	0.0760883	1.32627e-4
chr16	28979404	28979471	15621940	0	+	0.567164	(0.53,0.59]	chr16	1238800	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-231C14.10:SPNS1:RP11-264B17.3	ENSG00000288630.1:ENSG00000169682.18:ENSG00000261067.7	ENST00000675058.1:ENST00000568388.5:ENST00000565975.5:ENST00000311008.16:ENST00000568900.5:ENST00000323081.12:ENST00000334536.12:ENST00000569969.5:ENST00000352260.11:ENST00000566059.5:ENST00000564476.1:ENST00000561868.1:ENST00000568829.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	52	2	4.40251	4.722745	5.04298	1.91383e-4	4.48447e-6	0.0032874	1.41623e-4
chr1	173961909	173962002	1373522	0	-	0.494624	(0.49,0.53]	chr1	140031	3	CDS	CDS:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.27961	4.72259	5.16557	6.36135e-5	9.03426e-6	0.00136069	2.53429e-4
chr10	124398041	124398102	11729255	0	-	0.491803	(0.49,0.53]	chr10	895042	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	3.52514	4.72257	5.92	4.98361e-5	6.89283e-7	0.0011306	2.91313e-5
chr7	76327294	76327393	8863388	0	-	0.313131	(0.29,0.33]	chr7	677476	6	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	3.646	4.720565000000001	5.79513	1.13653e-6	1.17752e-11	4.91686e-5	2.00203e-9
chr1	226363942	226364006	1533043	0	-	0.5	(0.49,0.53]	chr1	153425	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000677374.1:ENST00000677815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	4.54668	4.720365	4.89405	2.57983e-4	1.40979e-6	0.00419998	5.33111e-5
chr11	57501151	57501240	12394853	0	-	0.662921	(0.59,1]	chr11	958792	1	CDS	CDS:UTR3:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5:ENST00000533263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.54183	4.7202	4.89857	0.0070583	0.00182139	0.0478044	0.0176016
chr3	47846536	47846629	3456907	0	+	0.666667	(0.59,1]	chr3	301424	5	CDS	CDS:UTR3:EXON_MRNA	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.54183	4.7202	4.89857	0.0070583	0.00182139	0.0478044	0.0176016
chr11	61811023	61811075	12406028	0	-	0.634615	(0.59,1]	chr11	960619	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5:ENST00000491310.5:ENST00000544696.5:ENST00000466716.5:ENST00000544309.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.17616	4.720175	6.26419	0.00434232	2.94176e-6	0.0339139	9.91141e-5
chr11	2922435	2922495	11769416	0	+	0.65	(0.59,1]	chr11	900410	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000463571.5:ENST00000441077.5:ENST00000449603.5:ENST00000495518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.57037	4.72007	4.86977	0.0054994	0.00246014	0.0402071	0.0230058
chr13	113320344	113320407	13908384	0	+	0.634921	(0.59,1]	chr13	1090353	1	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.57037	4.72007	4.86977	0.0054994	0.00246014	0.0402071	0.0230058
chr19	10283709	10283786	17224625	0	+	0.623377	(0.59,1]	chr19	1418496	4	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000588645.1:ENST00000592686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.57037	4.72007	4.86977	0.0054994	0.00246014	0.0402071	0.0230058
chr1	32224409	32224475	127491	0	+	0.560606	(0.53,0.59]	chr1	15791	1	CDS	CDS:EXON_MRNA:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	4.03453	4.7197499999999994	5.40497	4.6e-5	2.83308e-5	9.56296e-4	7.12614e-4
chr21	45516044	45516140	18279068	0	-	0.583333	(0.53,0.59]	chr21	1550595	4	CDS	CDS:EXON_MRNA:INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	4.03453	4.7197499999999994	5.40497	4.6e-5	2.83308e-5	9.56296e-4	7.12614e-4
chr6	149378678	149378767	7480750	0	+	0.494382	(0.49,0.53]	chr6	571630	6	CDS	CDS:UTR5:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	154	2	4.63996	4.719705	4.79945	2.05707e-9	5.43503e-10	2.14084e-7	6.11475e-8
chr2	63597506	63597574	1850041	0	+	0.397059	(0.39,0.42]	chr2	175418	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000436321.5:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6:ENST00000484538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.82973	4.719655	5.60958	1.3728e-4	2.11003e-6	0.00232973	8.25026e-5
chr5	62388716	62388813	6611630	0	-	0.340206	(0.33,0.36]	chr5	511030	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000514605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	4.37251	4.719565	5.06662	8.83161e-8	1.70355e-8	5.02887e-6	1.3397e-6
chr3	48469727	48469785	4167360	0	-	0.586207	(0.53,0.59]	chr3	349004	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1:ENST00000486344.5:ENST00000424965.5:ENST00000417841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.1234	4.719455	6.31551	0.00390623	6.83735e-8	0.0322851	4.03413e-6
chr17	42513860	42513919	16228741	0	+	0.576271	(0.53,0.59]	chr17	1312994	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	ATP6V0A1:MIR5010	ENSG00000033627.17:ENSG00000283929.1	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000582846.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	76	2	3.46612	4.71932	5.97252	1.16467e-5	8.30115e-7	3.43116e-4	3.4056e-5
chrX	102809517	102809617	18791471	0	+	0.31	(0.29,0.33]	chrX	1602043	18	INTRON	INTRON	LINC00630	ENSG00000223546.7	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	3.48001	4.718695	5.95738	0.00126219	2.05428e-7	0.013837	1.04036e-5
chr11	47625673	47625741	12388018	0	-	0.426471	(0.42,0.455]	chr11	957114	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MTCH2	ENSG00000109919.10	ENST00000539759.5:ENST00000302503.8:ENST00000534074.5:ENST00000525649.5:ENST00000530428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr11	118630806	118630906	12160024	0	+	0.45	(0.42,0.455]	chr11	937341	2	SS3_PROX	SS3_PROX:INTRON	PHLDB1	ENSG00000019144.19	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr12	109917876	109917972	13083153	0	+	0.427083	(0.42,0.455]	chr12	1020198	14	UTR3	UTR3:EXON_MRNA:INTRON	TCHP	ENSG00000139437.18	ENST00000544838.5:ENST00000405876.9:ENST00000312777.9:ENST00000537880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr16	23571989	23572089	15594618	0	+	0.43	(0.42,0.455]	chr16	1236627	15	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr16	28825769	28825841	15620267	0	+	0.430556	(0.42,0.455]	chr16	1238411	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000562867.5:ENST00000568266.5:ENST00000564656.5:ENST00000561539.1:ENST00000566080.1:ENST00000565971.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr21	14378269	14378340	18163738	0	-	0.450704	(0.42,0.455]	chr21	1542411	2	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr4	140540167	140540234	5131550	0	+	0.432836	(0.42,0.455]	chr4	415448	1	CDS	CDS:EXON_MRNA	ELMOD2	ENSG00000179387.10	ENST00000323570.8:ENST00000502397.5:ENST00000513606.1:ENST00000512057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.67981	4.718545	4.75728	5.38444e-4	5.3817e-4	0.00744072	0.00686676
chr8	41509682	41509782	9303504	0	+	0.48	(0.455,0.49]	chr8	712044	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA7	ENSG00000147533.17	ENST00000518270.5:ENST00000520817.5:ENST00000405786.2:ENST00000357743.9:ENST00000521417.5:ENST00000523128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	78	2	4.22226	4.71839	5.21452	1.23185e-5	5.82738e-9	3.58356e-4	4.88601e-7
chr1	167553471	167553556	1347954	0	-	0.741176	(0.59,1]	chr1	138011	2	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	7	369	2	4.11287	4.7182200000000005	5.32357	3.48543e-8	8.97735e-10	2.26317e-6	1.04639e-7
chr1	11958581	11958647	45328	0	+	0.560606	(0.53,0.59]	chr1	5755	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000196061.5:ENST00000465920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	164	2	4.45847	4.717925	4.97738	6.2332e-8	5.72846e-10	4.11618e-6	6.38109e-8
chrX	154779276	154779353	19279808	0	-	0.571429	(0.53,0.59]	chrX	1638726	1	CDS	CDS:UTR3:EXON_MRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000482757.1:ENST00000439370.5:ENST00000393531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	120	2	4.6032400000000004	4.71792	4.8326	1.08833e-6	2.39054e-9	4.73591e-5	2.245e-7
chr19	47488287	47488387	17597198	0	-	0.59	(0.53,0.59]	chr19	1481798	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NAPA:RP11-43N16.4	ENSG00000105402.8:ENSG00000279861.1	ENST00000263354.8:ENST00000597778.5:ENST00000624088.1:ENST00000594217.5:ENST00000597271.5:ENST00000595227.5:ENST00000594001.5	protein_coding	protein_coding	protein_coding:TEC	protein_coding:retained_intron:nonsense_mediated_decay:TEC	0	27	2	4.66348	4.71785	4.77222	0.00107799	6.67251e-4	0.0118238	0.00867533
chr2	189564041	189564133	3082424	0	-	0.586957	(0.53,0.59]	chr2	272317	6	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.66348	4.71785	4.77222	0.00107799	6.67251e-4	0.0118238	0.00867533
chr5	149362818	149362843	6290529	0	+	0.56	(0.53,0.59]	chr5	490725	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	PCYOX1L	ENSG00000145882.11	ENST00000510990.6:ENST00000274569.9:ENST00000511945.5:ENST00000505669.5:ENST00000503240.5:ENST00000514349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.66348	4.71785	4.77222	0.00107799	6.67251e-4	0.0118238	0.00867533
chr18	39335049	39335138	17084562	0	-	0.539326	(0.53,0.59]	chr18	1403466	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	MIR924HG:RPL7AP66	ENSG00000267374.2:ENSG00000175886.10	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000664913.1:ENST00000591469.1:ENST00000654837.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000667701.1:ENST00000652839.1:ENST00000663244.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000666091.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000588490.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	27	2	4.66936	4.7178450000000005	4.76633	0.00103174	6.98999e-4	0.0121443	0.00846751
chr10	87051653	87051750	11604810	0	-	0.42268	(0.42,0.455]	chr10	883719	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000683647.1:ENST00000683813.1:ENST00000474574.2:ENST00000684032.1:ENST00000684338.1:ENST00000487058.2:ENST00000684201.1:ENST00000684690.1:ENST00000682507.1:ENST00000683649.1:ENST00000683783.1:ENST00000681988.1:ENST00000684665.1:ENST00000684434.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	4.14705	4.71744	5.28783	2.17539e-5	2.1071e-5	5.73422e-4	5.06044e-4
chr6	63211783	63211883	7204408	0	+	0.5	(0.49,0.53]	chr6	556453	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FKBP1C	ENSG00000198225.5	ENST00000370659.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.7246	4.71682	5.70904	1.36405e-5	2.30382e-6	3.54667e-4	8.86852e-5
chr1	241504109	241504177	1577435	0	-	0.426471	(0.42,0.455]	chr1	157519	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	98	2	4.69393	4.715865	4.7378	3.8764e-7	4.0066e-9	1.99378e-5	3.51297e-7
chr7	44581511	44581574	8800250	0	-	0.698413	(0.59,1]	chr7	671346	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	281	2	3.88416	4.71579	5.54742	1.46381e-5	9.67069e-11	4.12451e-4	1.32e-8
chr5	82276208	82276255	6672994	0	-	0.446809	(0.42,0.455]	chr5	515061	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5:ENST00000503605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	325	2	4.42117	4.7157800000000005	5.01039	3.86613e-12	1e-12	7.51433e-10	2.46312e-10
chr6	24785699	24785799	7095341	0	+	0.43	(0.42,0.455]	chr6	542234	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000620958.4:ENST00000378054.6	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.16223	4.7157350000000005	6.26924	4.45084e-4	4.53551e-8	0.00633715	2.82715e-6
chr7	101211586	101211686	8953686	0	-	0.65	(0.59,1]	chr7	684680	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000440925.1:ENST00000421736.1:ENST00000463479.1:ENST00000478082.5:ENST00000460475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	98	2	2.77109	4.71563	6.66017	0.00331425	2.62838e-7	0.0285314	1.27591e-5
chr1	219968905	219968956	1510663	0	-	0.490196	(0.49,0.53]	chr1	150954	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000468487.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.33324	4.715505	6.09777	0.00162947	1.87775e-7	0.0169972	9.63683e-6
chr1	203158556	203158656	668097	0	+	0.47	(0.455,0.49]	chr1	67281	54	INTRON	INTRON	ADORA1	ENSG00000163485.17	ENST00000309502.7:ENST00000367236.8:ENST00000640524.1:ENST00000337894.9:ENST00000367235.1:ENST00000618295.1:ENST00000464019.1:ENST00000472535.1:ENST00000467253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.20189	4.7149149999999995	5.22794	0.00397662	4.80556e-5	0.0322851	9.91058e-4
chr17	78836772	78836872	16697261	0	-	0.46	(0.455,0.49]	chr17	1376131	4	SS3_PROX	SS3_PROX:INTRON	USP36	ENSG00000055483.19	ENST00000589225.5:ENST00000542802.7:ENST00000312010.10:ENST00000588086.5:ENST00000589424.5:ENST00000590546.6:ENST00000586531.5:ENST00000591942.6:ENST00000586896.2:ENST00000592907.5:ENST00000592275.5:ENST00000587783.5:ENST00000588365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	26	2	4.20189	4.7149149999999995	5.22794	0.00397662	4.80556e-5	0.0322851	9.91058e-4
chr7	98912021	98912117	8419374	0	+	0.46875	(0.455,0.49]	chr7	641165	1	CDS	CDS:EXON_MRNA	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.20189	4.7149149999999995	5.22794	0.00397662	4.80556e-5	0.0322851	9.91058e-4
chr8	94510494	94510573	9960204	0	-	0.455696	(0.455,0.49]	chr8	751279	2	CDS	CDS:EXON_MRNA:INTRON	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.20189	4.7149149999999995	5.22794	0.00397662	4.80556e-5	0.0322851	9.91058e-4
chr11	47778178	47778271	12389325	0	-	0.268817	[0,0.29]	chr11	957386	2	UTR3	UTR3:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.36183	4.714875	5.06792	0.00170062	6.88295e-5	0.01759	0.00133223
chr5	55652528	55652625	6584221	0	-	0.402062	(0.39,0.42]	chr5	509685	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC38A9	ENSG00000177058.12	ENST00000505708.5:ENST00000515159.5:ENST00000416547.6:ENST00000318672.7:ENST00000396865.7:ENST00000508124.5:ENST00000515629.5:ENST00000512595.5:ENST00000511233.5:ENST00000524030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.42584	4.714875	5.00391	0.00199429	9.12714e-5	0.0189001	0.00182992
chr10	73765450	73765519	11115804	0	+	0.550725	(0.53,0.59]	chr10	845877	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.21941	4.714700000000001	6.20999	0.00266171	1.51461e-7	0.0240332	8.00634e-6
chrX	155942039	155942139	18924230	0	+	0.39	(0.36,0.39]	chrX	1612669	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	4.50152	4.71449	4.92746	5.53333e-8	2.95456e-8	3.70319e-6	1.96716e-6
chr14	100277500	100277600	14487337	0	+	0.41	(0.39,0.42]	chr14	1131911	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:PRIMIRNA	YY1:MIR6764	ENSG00000100811.14:ENSG00000283840.1	ENST00000262238.10:ENST00000554804.1:ENST00000651219.1:ENST00000623799.1:ENST00000554579.1:ENST00000636393.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	44	2	3.32811	4.71443	6.10075	0.00182819	1.37224e-7	0.0183913	7.34618e-6
chr7	56078159	56078186	8290718	0	+	0.555556	(0.53,0.59]	chr7	631560	1	CDS	CDS:UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000461912.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.16383	4.714370000000001	5.26491	0.00659193	6.31437e-5	0.0454205	0.00124286
chr19	50725136	50725218	17376986	0	+	0.719512	(0.59,1]	chr19	1444805	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLEC11A	ENSG00000105472.13	ENST00000250340.9:ENST00000617718.4:ENST00000599973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.01545	4.71435	5.41325	0.0251889	3.01546e-4	0.114168	0.00472028
chr21	33552513	33552613	18101182	0	+	0.45	(0.42,0.455]	chr21	1534527	19	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	4.52766	4.71418	4.9007	1.58778e-6	7.03867e-8	5.89925e-5	4.57575e-6
chr1	149885500	149885595	1287098	0	-	0.378947	(0.36,0.39]	chr1	127851	12	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	3.72221	4.71415	5.70609	8.51693e-7	2.65708e-8	3.87319e-5	1.79757e-6
chr12	2721076	2721176	13172900	0	-	0.49	(0.455,0.49]	chr12	1030572	144	INTRON	INTRON	ITFG2-AS1	ENSG00000256150.2	ENST00000636122.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.26593	4.71404	5.16215	0.00372962	5.04348e-5	0.0302984	0.00113788
chr1	241500536	241500590	1577397	0	-	0.444444	(0.42,0.455]	chr1	157515	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.77666	4.714025	5.65139	1.85215e-4	2.06893e-6	0.00296795	8.11386e-5
chr11	112059902	112059983	12136081	0	+	0.395062	(0.39,0.42]	chr11	934826	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1:ENST00000680154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.63883	4.713805	4.78878	5.68159e-4	4.27222e-4	0.0077844	0.00577513
chr4	173313957	173314030	5233658	0	+	0.39726	(0.39,0.42]	chr4	421224	1	CDS	CDS:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000506317.1:ENST00000503213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.63883	4.713805	4.78878	5.68159e-4	4.27222e-4	0.0077844	0.00577513
chr6	157150949	157151046	7510672	0	+	0.412371	(0.39,0.42]	chr6	573317	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.63883	4.713805	4.78878	5.68159e-4	4.27222e-4	0.0077844	0.00577513
chr10	72274694	72274777	11111170	0	+	0.578313	(0.53,0.59]	chr10	845355	1	CDS	CDS:UTR5:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	134	2	4.08751	4.71363	5.33975	1.04565e-7	2.93156e-9	5.7906e-6	2.91582e-7
chr19	10291251	10291341	17224695	0	+	0.655556	(0.59,1]	chr19	1418529	3	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586004.1:ENST00000587398.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.6986	4.713495	5.72839	4.89626e-4	7.24021e-5	0.00639399	0.0015254
chr11	63976468	63976543	11977992	0	+	0.466667	(0.455,0.49]	chr11	918584	3	UTR3	UTR3:EXON_MRNA:INTRON	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	2.89761	4.713455	6.5293	1.34828e-5	2.21315e-9	3.52722e-4	2.27943e-7
chr7	16783586	16783681	8149505	0	+	0.273684	[0,0.29]	chr7	622215	2	UTR3	UTR3:EXON_MRNA	TSPAN13	ENSG00000106537.8	ENST00000262067.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.57416	4.7134149999999995	4.85267	6.75561e-4	2.14908e-4	0.00873562	0.00332687
chr12	57512007	57512103	12902986	0	+	0.479167	(0.455,0.49]	chr12	1005397	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000548944.1:ENST00000546971.5:ENST00000548630.1:ENST00000549048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	4.55476	4.71331	4.87186	2.33781e-4	1.27404e-6	0.00385436	4.90986e-5
chr4	108650655	108650755	5038393	0	+	0.55	(0.53,0.59]	chr4	409845	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000510556.1:ENST00000505745.1:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	147	2	4.61155	4.713065	4.81458	1.64156e-8	2.81239e-9	1.30036e-6	2.58208e-7
chr1	1564728	1564822	828095	0	-	0.468085	(0.455,0.49]	chr1	82535	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.36307	4.7129449999999995	5.06282	0.00218641	1.16789e-4	0.0208941	0.0020505
chr6	27865647	27865747	7105346	0	+	0.55	(0.53,0.59]	chr6	543489	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC16	ENSG00000276903.2	ENST00000613174.2	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	4.46764	4.7129449999999995	4.95825	2.87508e-4	5.65391e-8	0.00457439	3.41755e-6
chr6	33400157	33400257	7669541	0	-	0.46	(0.455,0.49]	chr6	587666	2	EXON_PSEUDO	EXON_PSEUDO	RPL12P1	ENSG00000204194.1	ENST00000374520.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.36307	4.7129449999999995	5.06282	0.00218641	1.16789e-4	0.0208941	0.0020505
chr3	175977496	175977593	4588838	0	-	0.56701	(0.53,0.59]	chr3	379519	1	EXON_PSEUDO	EXON_PSEUDO	ACTG1P23	ENSG00000230362.1	ENST00000437653.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	49	2	4.08599	4.712735	5.33948	4.08763e-5	3.38473e-5	9.64741e-4	7.45971e-4
chr5	21884118	21884214	5904906	0	+	0.395833	(0.39,0.42]	chr5	463295	17	EXON_PSEUDO	EXON_PSEUDO	HSPD1P1	ENSG00000213430.6	ENST00000503199.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	3.9641	4.7124749999999995	5.46085	6.346e-5	5.81708e-6	0.00124725	1.921e-4
chr1	91758612	91758681	1164765	0	-	0.565217	(0.53,0.59]	chr1	114966	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	4.30776	4.712415	5.11707	0.00407289	1.35965e-4	0.0324137	0.00231202
chr10	97460138	97460232	11646025	0	-	0.553191	(0.53,0.59]	chr10	887343	2	CDS	CDS:UTR3:EXON_MRNA	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000434538.5:ENST00000495415.5:ENST00000355839.10:ENST00000327238.14:ENST00000485400.1:ENST00000480108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.30776	4.712415	5.11707	0.00407289	1.35965e-4	0.0324137	0.00231202
chr14	68880809	68880899	14684900	0	-	0.544444	(0.53,0.59]	chr14	1150011	1	CDS	CDS:UTR3:EXON_MRNA	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000684287.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000556083.1:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000555075.5:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000544964.6:ENST00000553290.1:ENST00000556432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.30776	4.712415	5.11707	0.00407289	1.35965e-4	0.0324137	0.00231202
chr16	75108057	75108155	15740979	0	+	0.581633	(0.53,0.59]	chr16	1254137	3	UTR3	UTR3:EXON_MRNA	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000568351.1:ENST00000568844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.30776	4.712415	5.11707	0.00407289	1.35965e-4	0.0324137	0.00231202
chr18	23539810	23539905	17037346	0	-	0.557895	(0.53,0.59]	chr18	1400557	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000591075.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.30776	4.712415	5.11707	0.00407289	1.35965e-4	0.0324137	0.00231202
chr5	10429960	10430028	5875496	0	+	0.367647	(0.36,0.39]	chr5	462054	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	4.69136	4.71241	4.73346	3.2963e-4	4.2098e-7	0.00504024	1.91066e-5
chr4	75646337	75646396	5472878	0	-	0.322034	(0.29,0.33]	chr4	438370	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000677520.1:ENST00000678932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	3.69463	4.7123550000000005	5.73008	3.13406e-5	1.12475e-6	7.70685e-4	4.41253e-5
chr10	56358639	56358724	11514059	0	-	0.529412	(0.49,0.53]	chr10	877460	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6:ENST00000460654.5:ENST00000361148.6:ENST00000478181.5:ENST00000467523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.63338	4.7121200000000005	4.79086	9.56909e-4	4.20783e-4	0.010724	0.00611538
chr20	49634330	49634429	18003168	0	-	0.30303	(0.29,0.33]	chr20	1525863	15	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.64709	4.71212	5.77715	3.76873e-4	3.88822e-7	0.00523508	1.99593e-5
chr11	72097821	72097914	12447975	0	-	0.505376	(0.49,0.53]	chr11	967415	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5:ENST00000535107.5:ENST00000278671.10:ENST00000544594.5:ENST00000538404.1:ENST00000535872.1:ENST00000539797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.67972	4.71205	4.74438	6.94757e-4	5.91752e-4	0.00876781	0.00743488
chr14	22924007	22924095	14527927	0	-	0.5	(0.49,0.53]	chr14	1138144	1	CDS	CDS:UTR3:EXON_MRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000555454.5:ENST00000553915.5:ENST00000553897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.67972	4.71205	4.74438	6.94757e-4	5.91752e-4	0.00876781	0.00743488
chr2	41850401	41850501	2615797	0	-	0.51	(0.49,0.53]	chr2	235421	3	EXON_PSEUDO	EXON_PSEUDO	RPS12P4	ENSG00000236533.1	ENST00000414823.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.67972	4.71205	4.74438	6.94757e-4	5.91752e-4	0.00876781	0.00743488
chr7	117130548	117130606	8480012	0	+	0.517241	(0.49,0.53]	chr7	647640	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000465133.5:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.67972	4.71205	4.74438	6.94757e-4	5.91752e-4	0.00876781	0.00743488
chr2	174229307	174229379	3021861	0	-	0.430556	(0.42,0.455]	chr2	267464	1	CDS	CDS:UTR5:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.91373	4.71199	6.51025	0.00892357	6.20371e-9	0.0567495	5.13192e-7
chr10	80509300	80509385	11151932	0	+	0.611765	(0.59,1]	chr10	847904	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	4.03263	4.711875	5.39112	2.53595e-4	1.11254e-4	0.00381472	0.00213212
chr19	6597460	6597559	17443216	0	-	0.555556	(0.53,0.59]	chr19	1457171	45	INTRON	INTRON	CD70	ENSG00000125726.11	ENST00000597430.2	protein_coding	protein_coding	protein_coding	protein_coding	4	150	2	4.6384	4.7118	4.7852	8.42977e-7	1.95634e-10	3.83773e-5	2.46491e-8
chr1	21864099	21864156	891087	0	-	0.596491	(0.59,1]	chr1	92448	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.82178	4.711715	5.60165	2.76767e-4	1.30928e-4	0.00409634	0.00243846
chr1	245361665	245361764	808231	0	+	0.525253	(0.49,0.53]	chr1	80181	74	INTRON	INTRON	KIF26B	ENSG00000162849.16	ENST00000407071.7:ENST00000479506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.94177	4.711475	5.48118	0.0104929	1.24248e-5	0.063428	3.28918e-4
chr5	1887550	1887631	5852831	0	+	0.703704	(0.59,1]	chr5	460336	2	SS5_PROX	SS5_PROX:INTRON	CTD-2194D22.4	ENSG00000249326.1	ENST00000514569.1	lncRNA	lncRNA	lncRNA	lncRNA	3	230	2	4.06457	4.711449999999999	5.35833	9.48087e-5	4.32118e-10	0.00188744	4.99364e-8
chr11	95835289	95835389	12550033	0	-	0.47	(0.455,0.49]	chr11	973821	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675438.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.6621	4.71129	4.76048	7.84472e-4	3.99985e-4	0.00927662	0.00588767
chr2	156174792	156174892	2948822	0	-	0.49	(0.455,0.49]	chr2	261822	238	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.6621	4.71129	4.76048	7.84472e-4	3.99985e-4	0.00927662	0.00588767
chr4	98740741	98740839	4998379	0	+	0.459184	(0.455,0.49]	chr4	407806	1	EXON_PSEUDO	EXON_PSEUDO	BTF3P13	ENSG00000227118.3	ENST00000513224.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.6621	4.71129	4.76048	7.84472e-4	3.99985e-4	0.00927662	0.00588767
chr9	27327498	27327598	10616216	0	-	0.46	(0.455,0.49]	chr9	802805	24	UTR3	UTR3:EXON_MRNA	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.6621	4.71129	4.76048	7.84472e-4	3.99985e-4	0.00927662	0.00588767
chr8	27735915	27736015	9770746	0	-	0.38	(0.36,0.39]	chr8	738588	27	UTR3	UTR3:EXON_MRNA	CCDC25	ENSG00000147419.19	ENST00000356537.9:ENST00000520486.5:ENST00000520202.5:ENST00000523841.5:ENST00000519509.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	3.61731	4.711125	5.80494	4.67266e-6	9.78955e-7	1.61937e-4	3.91899e-5
chr14	102042383	102042445	14495821	0	+	0.564516	(0.53,0.59]	chr14	1133246	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000556499.3:ENST00000644888.1:ENST00000644239.2:ENST00000643591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.55274	4.710485	4.86823	0.00167999	4.35895e-4	0.0164993	0.00623608
chr5	14696991	14697089	5884884	0	+	0.530612	(0.53,0.59]	chr5	462679	41	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.55274	4.710485	4.86823	0.00167999	4.35895e-4	0.0164993	0.00623608
chr6	12514372	12514460	7056031	0	+	0.545455	(0.53,0.59]	chr6	540326	4	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.5586	4.71046	4.86232	0.00161229	4.57805e-4	0.0169168	0.00608573
chr9	35713246	35713298	10639637	0	-	0.576923	(0.53,0.59]	chr9	805077	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.5586	4.71046	4.86232	0.00161229	4.57805e-4	0.0169168	0.00608573
chr17	4704975	4705056	16418898	0	-	0.407407	(0.39,0.42]	chr17	1337590	3	EXON_PSEUDO	EXON_PSEUDO	RP11-314A20.1	ENSG00000213939.4	ENST00000466297.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	46	2	3.19588	4.710205	6.22453	0.00321212	5.19291e-8	0.0280721	3.1902e-6
chr1	91683038	91683138	1163991	0	-	0.45	(0.42,0.455]	chr1	114884	28	UTR3	UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.05954	4.7097549999999995	5.35997	0.00617886	2.41298e-5	0.0439741	5.6648e-4
chr2	69329740	69329798	2718362	0	-	0.431034	(0.42,0.455]	chr2	242017	2	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.05954	4.7097549999999995	5.35997	0.00617886	2.41298e-5	0.0439741	5.6648e-4
chr7	130131440	130131539	8529039	0	+	0.424242	(0.42,0.455]	chr7	651128	8	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.05954	4.7097549999999995	5.35997	0.00617886	2.41298e-5	0.0439741	5.6648e-4
chr8	76910244	76910343	9418459	0	+	0.434343	(0.42,0.455]	chr8	718707	52	INTRON	INTRON	RP11-48D4.2	ENSG00000253416.1	ENST00000519660.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.05954	4.7097549999999995	5.35997	0.00617886	2.41298e-5	0.0439741	5.6648e-4
chr1	155667830	155667929	1310627	0	-	0.363636	(0.36,0.39]	chr1	132523	61	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.58747	4.708995	4.83052	6.55819e-4	3.15227e-4	0.00860229	0.00452711
chr6	107893081	107893181	7881782	0	-	0.38	(0.36,0.39]	chr6	603366	2	SS5_PROX	SS5_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.58747	4.708995	4.83052	6.55819e-4	3.15227e-4	0.00860229	0.00452711
chr7	100034696	100034796	8425101	0	+	0.38	(0.36,0.39]	chr7	642421	6	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.58747	4.708995	4.83052	6.55819e-4	3.15227e-4	0.00860229	0.00452711
chr11	1761331	1761431	12230512	0	-	0.65	(0.59,1]	chr11	944418	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.78676	4.708805	5.63085	3.60514e-4	8.43355e-5	0.00544284	0.0015859
chr1	180836618	180836716	586125	0	+	0.428571	(0.42,0.455]	chr1	60713	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3:ENST00000498177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.59462	4.708629999999999	6.82264	0.0062772	3.87779e-10	0.0445415	4.53078e-8
chr6	44229976	44230046	7161481	0	+	0.471429	(0.455,0.49]	chr6	553787	2	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000647460.1:ENST00000646582.1:ENST00000645607.1:ENST00000643152.1:ENST00000371708.1:ENST00000646251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	3.28995	4.708600000000001	6.12725	3.81851e-5	1.23635e-7	9.15499e-4	6.7072e-6
chr20	35619578	35619662	17769541	0	+	0.630952	(0.59,1]	chr20	1501193	1	CDS	CDS:EXON_MRNA	SPAG4	ENSG00000061656.11	ENST00000679710.1:ENST00000374273.8:ENST00000454819.1:ENST00000468248.5:ENST00000498203.1:ENST00000430878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.44671	4.70843	4.97015	0.00931497	0.00140057	0.0586162	0.0144327
chr12	56130790	56130857	12898260	0	+	0.567164	(0.53,0.59]	chr12	1004212	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4:ENST00000550986.1:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	4.04528	4.708155	5.37103	4.28524e-5	2.29476e-9	9.98851e-4	2.17437e-7
chr4	36906125	36906224	5376723	0	-	0.50505	(0.49,0.53]	chr4	430909	6	INTRON	INTRON	RP11-27P15.1	ENSG00000287416.1	ENST00000661752.1	lncRNA	lncRNA	lncRNA	lncRNA	3	128	2	3.29825	4.70809	6.11793	0.00019429700000000001	1e-12	0.00332542	2.25522e-10
chr19	3983200	3983291	17430254	0	-	0.516484	(0.49,0.53]	chr19	1454731	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	808	2	4.25109	4.708085	5.16508	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	39013781	39013880	13976236	0	-	0.434343	(0.42,0.455]	chr13	1096566	12	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.79881	4.707975	5.61714	1.65328e-4	4.98624e-6	0.0029267300000000002	1.54467e-4
chr7	135950598	135950682	9085787	0	-	0.416667	(0.39,0.42]	chr7	693653	1	CDS	CDS:EXON_MRNA:INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	5	113	2	4.0728	4.7079450000000005	5.34309	1.24458e-8	1.71563e-9	1.02386e-6	1.69212e-7
chr1	21833815	21833870	890733	0	-	0.581818	(0.53,0.59]	chr1	92272	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	179	2	4.59035	4.707269999999999	4.82419	1.96972e-8	1.34069e-10	1.51872e-6	1.75645e-8
chr21	37512144	37512240	18117399	0	+	0.510417	(0.49,0.53]	chr21	1536306	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DYRK1A	ENSG00000157540.22	ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.23548	4.707269999999999	6.17906	2.76544e-4	1.01082e-7	0.00444204	5.6272e-6
chr16	50253883	50253983	15654203	0	+	0.47	(0.455,0.49]	chr16	1244083	73	INTRON	INTRON	ADCY7	ENSG00000121281.13	ENST00000564965.5:ENST00000564044.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.8036	4.707075	5.61055	1.59194e-4	3.16146e-6	0.00263091	1.16228e-4
chr6	43512817	43512874	7707996	0	-	0.473684	(0.455,0.49]	chr6	591420	2	CDS	CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6:ENST00000512713.5:ENST00000455768.6:ENST00000416380.6:ENST00000372417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.8036	4.707075	5.61055	1.59194e-4	3.16146e-6	0.00263091	1.16228e-4
chr1	21828915	21828997	890668	0	-	0.695122	(0.59,1]	chr1	92232	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	115	2	3.46705	4.707	5.94695	3.00886e-5	1.71208e-5	7.44367e-4	4.31898e-4
chr3	43555373	43555469	4145439	0	-	0.4375	(0.42,0.455]	chr3	346439	2	CDS	CDS:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.30177	4.706975	5.11218	6.01815e-5	7.69083e-6	0.00130886	2.20857e-4
chr17	16439010	16439060	16142060	0	+	0.52	(0.49,0.53]	chr17	1300746	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000584141.5:ENST00000658116.1:ENST00000492250.5:ENST00000654356.1:ENST00000578757.5:ENST00000475953.5:ENST00000578380.6:ENST00000470491.6	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	38	1118	2	3.79774	4.7069399999999995	5.61614	1.24961e-11	1e-12	2.31803e-9	2.25522e-10
chr5	154053252	154053342	6310059	0	+	0.455556	(0.455,0.49]	chr5	492202	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000439768.2:ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.54174	4.706799999999999	4.87186	0.00130137	2.33781e-4	0.0136936	0.00385436
chr7	50403410	50403510	8279165	0	+	0.47	(0.455,0.49]	chr7	630737	29	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.54174	4.706799999999999	4.87186	0.00130137	2.33781e-4	0.0136936	0.00385436
chr19	46787965	46788054	17595597	0	-	0.629214	(0.59,1]	chr19	1481430	1	UTR5	UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.2366	4.70664	6.17668	4.06803e-4	7.29392e-6	0.00552995	2.3256e-4
chr15	84802590	84802689	15073418	0	+	0.484848	(0.455,0.49]	chr15	1185821	3	UTR3	UTR3:EXON_MRNA	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.63978	4.70648	4.77318	6.94032e-4	4.7888e-4	0.00876781	0.00628636
chr19	48968515	48968611	17604711	0	-	0.489583	(0.455,0.49]	chr19	1483492	5	UTR3	UTR3:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.63978	4.70648	4.77318	6.94032e-4	4.7888e-4	0.00876781	0.00628636
chr5	176290862	176290955	6401043	0	+	0.462366	(0.455,0.49]	chr5	497190	14	CDS	CDS:EXON_MRNA:INTRON	SIMC1	ENSG00000170085.18	ENST00000443967.5:ENST00000430704.6:ENST00000341199.10:ENST00000495423.1:ENST00000429602.7:ENST00000467472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.63978	4.70648	4.77318	6.94032e-4	4.7888e-4	0.00876781	0.00628636
chr12	49269469	49269541	12865678	0	+	0.597222	(0.59,1]	chr12	999052	1	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	309	2	4.47515	4.706245	4.93734	2.85796e-7	1.53283e-9	1.37303e-5	1.66234e-7
chr17	42495625	42495716	16228545	0	+	0.549451	(0.53,0.59]	chr17	1312947	1	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	4.24099	4.706025	5.17106	1.28258e-5	1.2921e-8	3.70041e-4	9.66948e-7
chr6	132814568	132814613	7406801	0	+	0.755556	(0.59,1]	chr6	567779	1	UTR5	UTR5:EXON_MRNA	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	156	8222	2	4.20895	4.705489999999999	5.20203	1.59318e-11	1e-12	2.87617e-9	2.25522e-10
chr15	57556121	57556207	15305085	0	-	0.453488	(0.42,0.455]	chr15	1208081	3	EXON_PSEUDO	EXON_PSEUDO	CTD-2515H24.1	ENSG00000240874.1	ENST00000485045.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	53	2	4.54792	4.705005	4.86209	9.66045e-4	1.22097e-7	0.0115185	6.6496e-6
chr12	110333180	110333231	13085764	0	+	0.392157	(0.39,0.42]	chr12	1020506	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.3313	4.70491	5.07852	0.00209984	1.02164e-4	0.0204266	0.00183311
chr6	24976724	24976810	7095354	0	+	0.406977	(0.39,0.42]	chr6	542239	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP29	ENSG00000214975.4	ENST00000414949.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.3313	4.70491	5.07852	0.00209984	1.02164e-4	0.0204266	0.00183311
chrX	120439253	120439293	19196152	0	-	0.5	(0.49,0.53]	chrX	1631973	1	CDS	CDS:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	4.41931	4.704825	4.99034	1.6002e-4	3.4941e-6	0.00286408	1.14163e-4
chr17	48051382	48051464	16253277	0	+	0.609756	(0.59,1]	chr17	1317094	3	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000585062.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.11647	4.70443	6.29239	0.00535979	2.49631e-6	0.0406564	8.6736e-5
chr1	202767228	202767323	1452137	0	-	0.389474	(0.36,0.39]	chr1	145889	1	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	KDM5B:RP11-480I12.2	ENSG00000117139.18:ENSG00000235449.2	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000430450.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	3	95	2	4.3741	4.70426	5.03442	4.74881e-6	1.84645e-10	1.63715e-4	2.33742e-8
chr12	49758226	49758275	12869216	0	+	0.591837	(0.59,1]	chr12	999623	1	CDS	CDS:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000553022.1:ENST00000547013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	290	2	4.6365	4.703695	4.77089	4.98739e-8	9.79994e-9	3.39991e-6	7.64198e-7
chr3	139379067	139379167	4479698	0	-	0.41	(0.39,0.42]	chr3	372279	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5:ENST00000513274.5:ENST00000510491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	4.02687	4.703595	5.38032	4.35816e-5	9.82886e-6	0.00091744700000000005	2.98194e-4
chr20	35280051	35280118	17952421	0	-	0.522388	(0.49,0.53]	chr20	1520667	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	EIF6	ENSG00000242372.9	ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8:ENST00000415116.1:ENST00000462894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.51312	4.703585	4.89405	0.00156636	2.57983e-4	0.0156889	0.00419998
chr3	49023172	49023252	3459345	0	+	0.525	(0.49,0.53]	chr3	301971	1	UTR3	UTR3:EXON_MRNA	NDUFAF3	ENSG00000178057.15	ENST00000326912.8:ENST00000395458.6:ENST00000451378.2:ENST00000496152.1:ENST00000326925.11:ENST00000480392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.51312	4.703585	4.89405	0.00156636	2.57983e-4	0.0156889	0.00419998
chr17	78174758	78174858	16693274	0	-	0.59	(0.53,0.59]	chr17	1375299	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5	protein_coding	protein_coding	protein_coding	protein_coding	4	141	2	3.59295	4.703545	5.81414	4.77401e-6	3.79776e-11	1.64158e-4	5.74825e-9
chr1	167162754	167162837	1346552	0	-	0.578313	(0.53,0.59]	chr1	137899	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	GPA33:RP11-277B15.1	ENSG00000143167.12:ENSG00000213068.3	ENST00000632571.1:ENST00000450126.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	87	2	3.82407	4.70349	5.58291	0.0179666	3.37691e-10	0.0918323	4.00593e-8
chr1	161021009	161021073	1331663	0	-	0.5	(0.49,0.53]	chr1	136469	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.55929	4.703365	4.84744	0.00116196	3.70203e-4	0.0130851	0.00515475
chr10	102160287	102160343	11226655	0	+	0.5	(0.49,0.53]	chr10	854859	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.55929	4.703365	4.84744	0.00116196	3.70203e-4	0.0130851	0.00515475
chr3	107658668	107658768	3650436	0	+	0.34	(0.33,0.36]	chr3	312592	11	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6:ENST00000406780.5:ENST00000413213.5:ENST00000449271.5:ENST00000425868.5:ENST00000449213.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.20756	4.7031600000000005	5.19876	0.00386591	2.37278e-5	0.0310764	6.1689e-4
chr3	128637815	128637915	4441491	0	-	0.55	(0.53,0.59]	chr3	369026	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000479113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	3.61089	4.703085	5.79528	4.22829e-6	2.61912e-6	1.34682e-4	9.89086e-5
chr11	18402851	18402932	11831511	0	+	0.481481	(0.455,0.49]	chr11	906017	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	191	2	4.13053	4.7023600000000005	5.27419	4.19314e-10	1.95146e-11	5.36006e-8	3.16518e-9
chr15	78544193	78544267	15040540	0	+	0.432432	(0.42,0.455]	chr15	1183210	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	3.37962	4.702215000000001	6.0248100000000004	1.2947e-4	2.97136e-7	0.00242147	1.42027e-5
chr7	101212529	101212592	8953702	0	-	0.603175	(0.59,1]	chr7	684691	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000460475.1:ENST00000478264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	99	2	2.67996	4.70182	6.72368	0.00470478	1.74657e-7	0.0363963	9.04749e-6
chr11	65131273	65131373	12421676	0	-	0.53	(0.49,0.53]	chr11	963754	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	126	2	4.62357	4.70171	4.77985	2.21147e-7	6.37803e-10	1.24171e-5	7.00182e-8
chr14	74480204	74480273	14705283	0	-	0.550725	(0.53,0.59]	chr14	1151734	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	NPC2:MIR4709	ENSG00000119655.11:ENSG00000283944.1	ENST00000434013.6:ENST00000541064.5:ENST00000577272.1:ENST00000555619.6:ENST00000238633.6:ENST00000554482.1:ENST00000553490.5:ENST00000556009.5:ENST00000557510.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	32	2	3.82407	4.70169	5.57931	0.0179666	1.05602e-5	0.0918323	2.89015e-4
chr12	55819431	55819493	12896451	0	+	0.5	(0.49,0.53]	chr12	1003620	1	CDS_START	CDS_START:CDS:EXON_MRNA	ORMDL2	ENSG00000123353.10	ENST00000243045.10:ENST00000552672.5:ENST00000550836.1:ENST00000548974.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.23759	4.70158	5.16557	0.00436474	6.36135e-5	0.0335517	0.00136069
chr7	10938807	10938896	8678266	0	-	0.438202	(0.42,0.455]	chr7	663720	1	CDS	CDS:EXON_MRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000470761.5:ENST00000486007.1:ENST00000463308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	217	2	3.58268	4.701575	5.82047	2.15578e-8	1e-12	1.50212e-6	2.46312e-10
chr13	52642430	52642492	13748707	0	+	0.532258	(0.53,0.59]	chr13	1083044	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RP11-78J21.7:HNRNPA1L2	ENSG00000273784.5:ENSG00000139675.13	ENST00000342657.7:ENST00000614537.4:ENST00000398039.2:ENST00000683187.1:ENST00000357495.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	30	2	4.00393	4.701465000000001	5.399	0.0108084	3.02387e-5	0.064368	6.78876e-4
chr20	38138203	38138294	17963019	0	-	0.571429	(0.53,0.59]	chr20	1522324	2	CDS	CDS:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000468262.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.00393	4.701465000000001	5.399	0.0108084	3.02387e-5	0.064368	6.78876e-4
chr19	39481957	39482033	17326721	0	+	0.526316	(0.49,0.53]	chr19	1435054	2	CDS	CDS:EXON_MRNA:INTRON	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000598125.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000595286.1:ENST00000597782.5:ENST00000602265.5:ENST00000599733.5:ENST00000594583.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.68499	4.7011	5.71721	2.9991e-4	2.77472e-6	0.00472028	9.47025e-5
chr1	15568374	15568473	69119	0	+	0.434343	(0.42,0.455]	chr1	7734	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1:ENST00000495523.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	4.03383	4.701035	5.36824	4.24324e-5	1.33083e-5	8.98949e-4	3.81624e-4
chr12	9754582	9754682	13200161	0	-	0.44	(0.42,0.455]	chr12	1034799	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CD69	ENSG00000110848.8	ENST00000228434.7:ENST00000536709.1:ENST00000416624.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	4.03383	4.701035	5.36824	4.24324e-5	1.33083e-5	8.98949e-4	3.81624e-4
chr12	120694204	120694269	13117444	0	+	0.507692	(0.49,0.53]	chr12	1023991	1	CDS	CDS:EXON_MRNA	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2:ENST00000545525.5:ENST00000535656.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.28332	4.7010000000000005	5.11868	0.00338762	9.66505e-5	0.0288632	0.00175267
chr15	45061070	45061148	14901048	0	+	0.512821	(0.49,0.53]	chr15	1171843	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.28332	4.7010000000000005	5.11868	0.00338762	9.66505e-5	0.0288632	0.00175267
chr4	13338390	13338479	4721293	0	+	0.52809	(0.49,0.53]	chr4	391943	2	EXON_PSEUDO	EXON_PSEUDO	HSP90AB2P	ENSG00000205940.8	ENST00000507090.2	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	0	26	2	4.28332	4.7010000000000005	5.11868	0.00338762	9.66505e-5	0.0288632	0.00175267
chr7	73573319	73573363	8854600	0	-	0.5	(0.49,0.53]	chr7	676043	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000495885.1:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.28332	4.7010000000000005	5.11868	0.00338762	9.66505e-5	0.0288632	0.00175267
chr6	43530687	43530755	7708156	0	-	0.485294	(0.455,0.49]	chr6	591495	1	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.3605	4.700785	6.04107	0.00147278	2.38066e-7	0.0157578	1.17461e-5
chr6	170543600	170543665	8091086	0	-	0.415385	(0.39,0.42]	chr6	618034	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	131	2	4.34774	4.7005300000000005	5.05332	6.66205e-9	1.7428e-10	5.9722e-7	2.21991e-8
chr2	119254683	119254765	2024451	0	+	0.634146	(0.59,1]	chr2	191392	1	CDS	CDS:EXON_MRNA	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.2353	4.70053	5.16576	0.0165254	6.55716e-4	0.0873033	0.0080931
chrX	154380881	154380953	18917487	0	+	0.638889	(0.59,1]	chrX	1611787	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EMD	ENSG00000102119.12	ENST00000369835.3:ENST00000369842.9:ENST00000486738.5:ENST00000428228.5:ENST00000485261.1:ENST00000682114.1:ENST00000684678.1:ENST00000683627.1:ENST00000684082.1:ENST00000684633.1:ENST00000682478.1:ENST00000683576.1:ENST00000468294.5:ENST00000492448.1:ENST00000471965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.2353	4.70053	5.16576	0.0165254	6.55716e-4	0.0873033	0.0080931
chr12	57715759	57715829	12904285	0	+	0.585714	(0.53,0.59]	chr12	1005875	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000549307.5:ENST00000550438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.29875	4.700455	6.10216	0.00191422	3.17557e-7	0.018324	1.68263e-5
chr11	27368358	27368456	12313383	0	-	0.397959	(0.39,0.42]	chr11	952574	5	CDS	CDS:EXON_MRNA	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.93996	4.7003	5.46064	0.00841622	1.15573e-5	0.054565	3.09736e-4
chr5	134612690	134612730	6846443	0	-	0.4	(0.39,0.42]	chr5	523877	1	CDS_START	CDS_START:CDS:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000508363.5:ENST00000502539.5:ENST00000439578.5:ENST00000509937.5:ENST00000509730.5:ENST00000503318.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.93996	4.7003	5.46064	0.00841622	1.15573e-5	0.054565	3.09736e-4
chr1	186334463	186334533	1411939	0	-	0.485714	(0.455,0.49]	chr1	142846	3	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.32883	4.7002749999999995	5.07172	8.3067e-5	6.31002e-6	0.00171126	1.88287e-4
chr11	319937	319959	12225821	0	-	0.772727	(0.59,1]	chr11	943138	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000680920.1:ENST00000679793.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	35	2	4.26354	4.700165	5.13679	0.0134233	9.28022e-4	0.0743429	0.0111748
chr17	57839585	57839683	16610253	0	-	0.357143	(0.33,0.36]	chr17	1364252	50	UTR3	UTR3:EXON_MRNA	MRPS23	ENSG00000181610.13	ENST00000313608.13	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.52266	4.7001550000000005	4.87765	8.34989e-4	2.2423e-4	0.0102956	0.00344776
chr1	21834856	21834945	890746	0	-	0.640449	(0.59,1]	chr1	92278	3	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	137	2	4.63181	4.700145	4.76848	4.23414e-6	1.47805e-6	1.4819e-4	5.56634e-5
chr1	11054680	11054772	859074	0	-	0.630435	(0.59,1]	chr1	86758	2	UTR3	UTR3:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000475189.1:ENST00000376957.7:ENST00000490101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	91	2	3.28558	4.699925	6.11427	3.5027e-4	6.89731e-6	0.00532165	0.00020353099999999999
chr1	229431498	229431598	1541764	0	-	0.6	(0.59,1]	chr1	154333	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTA1	ENSG00000143632.15	ENST00000684723.1:ENST00000366683.4:ENST00000366684.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.11672	4.6997800000000005	5.28284	0.0222273	4.04404e-4	0.105595	0.00550292
chr12	123295107	123295207	13595069	0	-	0.34	(0.33,0.36]	chr12	1070977	61	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.60198	4.699645	5.79731	6.01238e-4	8.38679e-7	0.00811676	3.43427e-5
chr1	110891408	110891471	405550	0	+	0.412698	(0.39,0.42]	chr1	39806	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000471220.5:ENST00000476408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	4.23561	4.699540000000001	5.16347	6.48089e-5	1.16386e-5	0.00126536	3.43116e-4
chr6	26104159	26104259	7101128	0	+	0.55	(0.53,0.59]	chr6	542789	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C3	ENSG00000197061.5	ENST00000377803.4	protein_coding	protein_coding	protein_coding	protein_coding	8	269	2	4.4186	4.699275	4.97995	8.12161e-10	3.10674e-12	9.54098e-8	6.19009e-10
chrX	47202637	47202725	18686782	0	+	0.568182	(0.53,0.59]	chrX	1593215	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	4.27526	4.699135	5.12301	1.2852e-4	1.03921e-5	0.00241206	2.85526e-4
chr15	74415800	74415892	15374489	0	-	0.586957	(0.53,0.59]	chr15	1215173	1	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.6522	4.6988900000000005	5.74558	2.31822e-5	3.61407e-6	5.49766e-4	1.29307e-4
chr11	65131469	65131522	12421678	0	-	0.509434	(0.49,0.53]	chr11	963756	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.12263	4.6987000000000005	5.27477	0.00591451	4.14521e-5	0.0427941	8.8376e-4
chr11	14480758	14480831	12281794	0	-	0.438356	(0.42,0.455]	chr11	949637	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.48522	4.698675	4.91213	1.75074e-4	2.15617e-6	0.00306313	7.62296e-5
chr11	82838456	82838556	12499232	0	-	0.42	(0.39,0.42]	chr11	971427	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000681592.1:ENST00000526918.6:ENST00000680186.1:ENST00000679809.1:ENST00000681432.1:ENST00000680040.1:ENST00000681883.1:ENST00000525772.6:ENST00000680524.1:ENST00000393399.6:ENST00000532709.5:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	2.98752	4.69866	6.4098	2.91053e-4	1.13257e-8	0.00462551	8.6123e-7
chr4	173302046	173302105	5233536	0	+	0.491525	(0.49,0.53]	chr4	421212	1	CDS	CDS:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000506317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	3.73494	4.69833	5.66172	0.0189345	3.99372e-6	0.0934721	1.28691e-4
chr1	113114606	113114696	413568	0	+	0.455556	(0.455,0.49]	chr1	40831	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.0204	4.698245	5.37609	0.00736097	2.05373e-5	0.0490627	4.97369e-4
chr11	4123249	4123316	11774317	0	+	0.477612	(0.455,0.49]	chr11	901015	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5:ENST00000526304.5:ENST00000528470.5:ENST00000531591.5:ENST00000529109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.0204	4.698245	5.37609	0.00736097	2.05373e-5	0.0490627	4.97369e-4
chr3	98590631	98590686	4319653	0	-	0.381818	(0.36,0.39]	chr3	360281	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000513674.1:ENST00000515041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	4.58747	4.697975	4.80848	6.55819e-4	1.65455e-7	0.00860229	8.63103e-6
chr6	26031819	26031889	7646928	0	-	0.571429	(0.53,0.59]	chr6	582488	2	CDS	CDS:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	23	714	2	4.6348	4.697845	4.76089	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	10126493	10126593	3302351	0	+	0.37	(0.36,0.39]	chr3	290648	3	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	6	123	2	4.03478	4.697825	5.36087	4.23058e-9	9.02454e-10	3.68809e-7	1.04985e-7
chr12	21637132	21637194	13236621	0	-	0.419355	(0.39,0.42]	chr12	1037949	2	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	4.23561	4.697395	5.15918	1.16386e-5	9.11314e-9	3.43116e-4	7.16729e-7
chr1	33021592	33021647	924548	0	-	0.490909	(0.49,0.53]	chr1	97542	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5:ENST00000469238.1:ENST00000466029.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	4.04776	4.69733	5.3469	2.75121e-5	1.30295e-6	6.30607e-4	5.52593e-5
chr12	62285398	62285498	12913303	0	+	0.38	(0.36,0.39]	chr12	1006366	63	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.0322	4.697055	5.36191	0.00588589	1.79406e-5	0.0427941	4.45904e-4
chr5	96781692	96781773	6721154	0	-	0.382716	(0.36,0.39]	chr5	517400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000514604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.0322	4.697055	5.36191	0.00588589	1.79406e-5	0.0427941	4.45904e-4
chr7	90413132	90413221	8384976	0	+	0.382022	(0.36,0.39]	chr7	638936	5	CDS	CDS:EXON_MRNA:INTRON	CLDN12:CTB-13L3.1	ENSG00000157224.16:ENSG00000273299.1	ENST00000416322.5:ENST00000287916.8:ENST00000480135.1:ENST00000394604.5:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000451941.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	25	2	4.0322	4.697055	5.36191	0.00588589	1.79406e-5	0.0427941	4.45904e-4
chr3	32635304	32635387	4110860	0	-	0.421687	(0.42,0.455]	chr3	343416	2	EXON_PSEUDO	EXON_PSEUDO	RPL30P4	ENSG00000237676.1	ENST00000429309.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	93	2	4.10452	4.69702	5.2895200000000004	8.219e-7	3.1296e-9	3.75569e-5	2.83747e-7
chr9	103204777	103204877	10778055	0	-	0.48	(0.455,0.49]	chr9	815846	163	INTRON	INTRON	LINC01492	ENSG00000225564.6	ENST00000411575.5	lncRNA	lncRNA	lncRNA	lncRNA	3	66	2	3.60251	4.69697	5.79143	4.10073e-6	8.96581e-7	1.31665e-4	4.03386e-5
chr19	12940540	12940597	17238362	0	+	0.596491	(0.59,1]	chr19	1421056	1	CDS	CDS:EXON_MRNA:PRIMIRNA	CALR:MIR6515	ENSG00000179218.15:ENSG00000274417.1	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6:ENST00000619843.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	23	1927	2	3.43637	4.69597	5.95557	5.97125e-7	1e-12	2.85082e-5	2.25522e-10
chr2	187466355	187466451	3070163	0	-	0.3125	(0.29,0.33]	chr2	271827	23	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.18644	4.69586	5.20528	2.18753e-5	1.56826e-5	5.75389e-4	3.99464e-4
chr8	47800792	47800889	9815756	0	-	0.494845	(0.49,0.53]	chr8	742535	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.68246	4.69575	5.70904	3.06313e-4	2.30382e-6	0.00442973	8.86852e-5
chr6	52264300	52264395	7736583	0	-	0.505263	(0.49,0.53]	chr6	593677	4	UTR3	UTR3:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.06942	4.6956050000000005	5.32179	3.44689e-5	2.63311e-5	7.57659e-4	6.73425e-4
chrX	55025819	55025900	19084731	0	-	0.518519	(0.49,0.53]	chrX	1623782	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	4.06942	4.6956050000000005	5.32179	3.44689e-5	2.63311e-5	7.57659e-4	6.73425e-4
chr17	44385823	44385921	16558159	0	-	0.571429	(0.53,0.59]	chr17	1359508	1	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000262407.6	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.43279	4.69552	4.95825	0.0026472	2.87508e-4	0.0231864	0.00457439
chr22	35423277	35423341	18359628	0	+	0.578125	(0.53,0.59]	chr22	1561061	2	CDS	CDS:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.43863	4.69548	4.95233	0.00254763	3.02711e-4	0.0233955	0.00439897
chr1	21852087	21852160	890947	0	-	0.726027	(0.59,1]	chr1	92382	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.1277	4.695335	6.26297	0.00490589	4.52763e-6	0.0366648	1.57276e-4
chr12	95126299	95126389	13023846	0	+	0.544444	(0.53,0.59]	chr12	1013813	7	EXON_PSEUDO	EXON_PSEUDO	RP11-129B9.1	ENSG00000237774.3	ENST00000470084.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	87	2	4.66936	4.695130000000001	4.7209	0.00103174	6.47717e-9	0.0121443	5.30089e-7
chr3	39407653	39407753	3423785	0	+	0.51	(0.49,0.53]	chr3	297992	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	515	2	4.31868	4.695119999999999	5.07156	7.3143e-11	1e-12	1.12969e-8	2.25522e-10
chr11	78104355	78104409	12477749	0	-	0.481481	(0.455,0.49]	chr11	970699	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000531213.5:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	4.16204	4.694990000000001	5.22794	4.80556e-5	1.83061e-5	9.91058e-4	4.99708e-4
chr6	43012374	43012469	7706606	0	-	0.494737	(0.49,0.53]	chr6	591054	14	UTR3	UTR3:EXON_MRNA	MEA1	ENSG00000124733.5	ENST00000244711.4:ENST00000642555.1:ENST00000643776.1:ENST00000645410.1:ENST00000645375.1:ENST00000642748.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.68088	4.69496	5.70904	1.82756e-5	2.30382e-6	4.52458e-4	8.86852e-5
chr7	44581772	44581823	8800255	0	-	0.529412	(0.49,0.53]	chr7	671350	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	3.68088	4.69496	5.70904	1.82756e-5	2.30382e-6	4.52458e-4	8.86852e-5
chr1	198756380	198756479	648500	0	+	0.30303	(0.29,0.33]	chr1	65229	3	UTR3	UTR3:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000442510.8	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	4.12345	4.694929999999999	5.26641	1.26128e-6	2.55061e-9	5.37756e-5	2.38441e-7
chr9	137805234	137805332	10517976	0	+	0.459184	(0.455,0.49]	chr9	797705	15	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.81624	4.69471	5.57318	1.48205e-4	6.11867e-6	0.00269793	1.83393e-4
chr1	35631273	35631344	938619	0	-	0.549296	(0.53,0.59]	chr1	98713	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	112	2	4.16026	4.694520000000001	5.22878	6.52435e-7	7.6943e-9	2.7837e-5	6.78974e-7
chr11	78072983	78073083	12477577	0	-	0.37	(0.36,0.39]	chr11	970658	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1:ENST00000528164.1	protein_coding	protein_coding	protein_coding	protein_coding	4	128	2	3.86626	4.694505	5.52275	6.18583e-6	1.03451e-12	2.02643e-4	2.32702e-10
chr1	12567995	12568081	862085	0	-	0.488372	(0.455,0.49]	chr1	87500	2	UTR3	UTR3:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	4.06083	4.69421	5.32759	3.56832e-5	1.92345e-5	7.81595e-4	5.18397e-4
chr15	43768542	43768597	14896519	0	+	0.490909	(0.49,0.53]	chr15	1171302	2	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	194	2	3.41035	4.6930700000000005	5.97579	1.62733e-5	1e-12	4.52905e-4	2.25522e-10
chr11	61637571	61637670	11970171	0	+	0.484848	(0.455,0.49]	chr11	917150	11	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPLP0P2	ENSG00000243742.5	ENST00000496593.5:ENST00000490750.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	29	2	3.81275	4.692965	5.57318	0.0138827	6.11867e-6	0.0760883	1.83393e-4
chr16	58520865	58520957	15966221	0	-	0.456522	(0.455,0.49]	chr16	1281046	11	UTR3	UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.41041	4.69283	4.97525	0.00218771	1.38474e-4	0.0202707	0.00254294
chr17	82765210	82765302	16385496	0	+	0.478261	(0.455,0.49]	chr17	1332894	8	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.41041	4.69283	4.97525	0.00218771	1.38474e-4	0.0202707	0.00254294
chr3	150622384	150622421	3808192	0	+	0.486486	(0.455,0.49]	chr3	325080	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SELENOT	ENSG00000198843.13	ENST00000480740.5:ENST00000615547.4:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.41041	4.69283	4.97525	0.00218771	1.38474e-4	0.0202707	0.00254294
chr1	205456640	205456723	675912	0	+	0.674699	(0.59,1]	chr1	68309	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LEMD1-DT	ENSG00000224717.1	ENST00000442318.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	3.84557	4.69263	5.53969	0.0410704	1.29608e-4	0.163285	0.00223885
chr12	30861920	30862006	12813871	0	+	0.418605	(0.39,0.42]	chr12	994872	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC00941:PPIAP44	ENSG00000285517.1:ENSG00000258118.1	ENST00000648700.1:ENST00000550612.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	23	2	4.49324	4.6926000000000005	4.89196	0.00108192	2.62166e-4	0.0124943	0.0039188
chr19	10651861	10651960	17460792	0	-	0.40404	(0.39,0.42]	chr19	1461202	1	EXON_LNCRNA	EXON_LNCRNA	ILF3-DT	ENSG00000267100.1	ENST00000591501.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.49324	4.6926000000000005	4.89196	0.00108192	2.62166e-4	0.0124943	0.0039188
chr12	68553487	68553586	13394546	0	-	0.606061	(0.59,1]	chr12	1055115	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP12	ENSG00000240087.3	ENST00000435879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	331	2	4.52826	4.692435	4.85661	2.73124e-8	4.63608e-9	2.01087e-6	3.98582e-7
chr2	170966130	170966230	2206509	0	+	0.39	(0.36,0.39]	chr2	201863	1	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	4.51875	4.69239	4.86603	1.68962e-4	1.56348e-6	0.00297945	5.82084e-5
chr10	95614063	95614161	11632947	0	-	0.459184	(0.455,0.49]	chr10	886006	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000485428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.50805	4.69219	4.87633	0.00122223	2.95855e-4	0.0135383	0.00432147
chr19	40377785	40377885	17328735	0	+	0.56	(0.53,0.59]	chr19	1435585	1	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000488311.1:ENST00000486134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	213	2	3.34735	4.69198	6.03661	1.46925e-4	1e-12	0.0026854	2.25522e-10
chr14	30821588	30821673	14201129	0	+	0.376471	(0.36,0.39]	chr14	1112861	3	EXON_PSEUDO	EXON_PSEUDO	RP11-829H16.2	ENSG00000213867.4	ENST00000468034.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	37	2	3.82613	4.69164	5.55715	1.39565e-4	2.50226e-6	0.0023599	9.53193e-5
chr7	27829016	27829110	8187601	0	+	0.297872	(0.29,0.33]	chr7	624938	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000396319.7:ENST00000457186.2:ENST00000488564.2:ENST00000460059.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.45534	4.69153	4.92772	0.00110984	1.56621e-4	0.0127344	0.00259991
chr7	93197484	93197547	8927698	0	-	0.31746	(0.29,0.33]	chr7	681269	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2:ENST00000492616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.45534	4.69153	4.92772	0.00110984	1.56621e-4	0.0127344	0.00259991
chr3	50358399	50358493	4177895	0	-	0.606383	(0.59,1]	chr3	351837	3	CDS	CDS:EXON_MRNA	TMEM115	ENSG00000126062.4	ENST00000266025.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.37323	4.69134	5.00945	0.00990413	0.00149725	0.061536	0.0159607
chr8	30083035	30083121	9780663	0	-	0.709302	(0.59,1]	chr8	739548	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000520303.5:ENST00000522055.1:ENST00000523761.1:ENST00000521083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.37323	4.69134	5.00945	0.00990413	0.00149725	0.061536	0.0159607
chr5	74931739	74931817	6036887	0	+	0.358974	(0.33,0.36]	chr5	473559	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2503O16.1	ENSG00000239517.1	ENST00000477662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.1284	4.69074	5.25308	0.00407303	2.94355e-5	0.0324137	6.67979e-4
chr12	7933063	7933140	13193308	0	-	0.493506	(0.49,0.53]	chr12	1033521	2	CDS	CDS:UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1:ENST00000544936.1:ENST00000476634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	101	2	4.62574	4.690565	4.75539	7.86745e-7	3.11597e-9	3.25904e-5	3.07872e-7
chr11	6613853	6613952	12249914	0	-	0.363636	(0.36,0.39]	chr11	946834	12	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	9	203	2	4.66922	4.690225	4.71123	1.33275e-11	5.39813e-12	2.46131e-9	1.00874e-9
chr5	177351451	177351547	6991250	0	-	0.479167	(0.455,0.49]	chr5	534755	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	3.09445	4.689995	6.28554	6.1765e-4	3.54381e-8	0.00822794	2.29553e-6
chr6	30676681	30676779	7658822	0	-	0.520408	(0.49,0.53]	chr6	584161	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615892.4:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	150	2	4.33766	4.68989	5.04212	8.54205e-9	2.31429e-10	7.38823e-7	2.86622e-8
chr12	102085765	102085856	13508252	0	-	0.450549	(0.42,0.455]	chr12	1061957	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000251074.5:ENST00000547269.1:ENST00000551744.2:ENST00000551200.5:ENST00000543021.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	4.09155	4.68969	5.28783	2.98142e-5	2.17539e-5	6.7355e-4	5.73422e-4
chr20	24567364	24567464	17741475	0	+	0.56	(0.53,0.59]	chr20	1497098	234	INTRON	INTRON	SYNDIG1	ENSG00000101463.6	ENST00000376862.4	protein_coding	protein_coding	protein_coding	protein_coding	6	266	2	3.06709	4.689475	6.31186	4.61614e-5	1e-12	0.00106317	2.25522e-10
chr7	7742474	7742574	8670779	0	-	0.54	(0.53,0.59]	chr7	663522	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	AC007161.5	ENSG00000234718.7	ENST00000418534.3:ENST00000423039.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	91	2	2.16037	4.689415	7.21846	0.0254312	2.98389e-11	0.117089	4.62267e-9
chr2	86477876	86477973	1927307	0	+	0.536082	(0.53,0.59]	chr2	181633	1	CDS	CDS:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	4.04528	4.689395	5.33351	4.35359e-5	4.28524e-5	9.98851e-4	0.00091744700000000005
chr10	12195769	12195862	11370688	0	-	0.580645	(0.53,0.59]	chr10	867205	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000378940.7:ENST00000378927.7:ENST00000444732.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.69065	4.68938	5.68811	3.04331e-4	5.40688e-6	0.00472028	1.64762e-4
chr1	12125950	12126001	46690	0	+	0.607843	(0.59,1]	chr1	6047	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5:ENST00000413146.6:ENST00000479933.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.01545	4.68874	5.36203	0.0251889	3.74697e-4	0.114168	0.00560631
chr1	11970669	11970742	45461	0	+	0.547945	(0.53,0.59]	chr1	5800	1	CDS	CDS:EXON_MRNA:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	107	2	3.69065	4.688615	5.68658	3.04331e-4	1.28277e-10	0.00472028	1.68881e-8
chr13	97393922	97394021	13858032	0	+	0.343434	(0.33,0.36]	chr13	1086522	26	UTR3	UTR3:EXON_MRNA	MBNL2	ENSG00000139793.19	ENST00000397601.5:ENST00000343600.8:ENST00000376673.7:ENST00000679496.1:ENST00000345429.10	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	3.06149	4.68846	6.31543	2.51517e-4	1.40482e-8	0.00412169	1.0408e-6
chr15	78922988	78923088	15398592	0	-	0.48	(0.455,0.49]	chr15	1217557	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	4.16204	4.688280000000001	5.21452	1.83061e-5	5.82738e-9	4.99708e-4	4.88601e-7
chr13	21628498	21628584	13928411	0	-	0.465116	(0.455,0.49]	chr13	1092751	2	EXON_PSEUDO	EXON_PSEUDO	RPS7P10	ENSG00000226525.5	ENST00000464254.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	48	2	3.12843	4.687995	6.24756	0.00392855	4.80845e-8	0.0322851	2.97443e-6
chrX	53547929	53548015	19077322	0	-	0.511628	(0.49,0.53]	chrX	1622706	4	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.60476	4.6877	5.77064	4.52633e-4	1.94063e-6	0.00642319	6.9799e-5
chr22	21763442	21763542	18442385	0	-	0.38	(0.36,0.39]	chr22	1572508	39	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	4	127	2	3.86626	4.68757	5.5088800000000004	6.18583e-6	1.19826e-12	2.02643e-4	2.64256e-10
chr19	47271678	47271769	17361083	0	+	0.681319	(0.59,1]	chr19	1441054	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.63106	4.6874199999999995	4.74378	0.00537945	0.00312942	0.0406564	0.0264364
chr6	7230093	7230193	7031172	0	+	0.68	(0.59,1]	chr6	538731	12	CDS	CDS:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.63106	4.6874199999999995	4.74378	0.00537945	0.00312942	0.0406564	0.0264364
chr1	19327319	19327412	85661	0	+	0.688172	(0.59,1]	chr1	9691	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC66A1	ENSG00000040487.13	ENST00000375155.7:ENST00000375153.8:ENST00000469076.5:ENST00000400548.6:ENST00000497827.1:ENST00000432465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.65968	4.68739	4.7151	0.00413632	0.00412279	0.0325842	0.0324998
chr3	51988975	51989075	3476573	0	+	0.61	(0.59,1]	chr3	304019	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ABHD14A-ACY1:ACY1	ENSG00000114786.16:ENSG00000243989.9	ENST00000463721.5:ENST00000636646.1:ENST00000637778.1:ENST00000463937.1:ENST00000636942.1:ENST00000637696.1:ENST00000636089.1:ENST00000637130.1:ENST00000635951.1:ENST00000636826.1:ENST00000635946.1:ENST00000635937.1:ENST00000637563.1:ENST00000637025.1:ENST00000636718.1:ENST00000636490.1:ENST00000637978.1:ENST00000637730.1:ENST00000637512.1:ENST00000636660.1:ENST00000636880.1:ENST00000476351.5:ENST00000476854.5:ENST00000491318.5:ENST00000494103.5:ENST00000404366.7:ENST00000636358.2:ENST00000635797.1:ENST00000635941.1:ENST00000638136.1:ENST00000637199.1:ENST00000637034.1:ENST00000637746.1:ENST00000637149.1:ENST00000490244.2:ENST00000638077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.65968	4.68739	4.7151	0.00413632	0.00412279	0.0325842	0.0324998
chr11	6614347	6614446	12249919	0	-	0.50505	(0.49,0.53]	chr11	946834	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	3	101	2	4.66966	4.68726	4.70486	3.98937e-7	7.73267e-9	2.04083e-5	6.22462e-7
chr7	107917367	107917462	8457458	0	+	0.442105	(0.42,0.455]	chr7	646322	2	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.99666	4.687075	6.37749	0.00104775	1.88677e-8	0.0123035	1.34393e-6
chr1	154957219	154957317	1306031	0	-	0.561224	(0.53,0.59]	chr1	131596	3	UTR3	UTR3:EXON_MRNA	PYGO2	ENSG00000163348.4	ENST00000368457.3	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.53663	4.6869700000000005	5.8373100000000004	4.77731e-5	2.06883e-6	0.00109049	7.35008e-5
chr1	154978871	154978966	482019	0	+	0.421053	(0.42,0.455]	chr1	50167	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000477676.6:ENST00000474215.5:ENST00000473344.1:ENST00000471245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.24133	4.68651	5.13169	0.00326918	8.60227e-5	0.0282494	0.00160731
chr10	90900579	90900679	11185994	0	+	0.45	(0.42,0.455]	chr10	850290	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPP30	ENSG00000148688.14	ENST00000413330.5:ENST00000487998.5:ENST00000371703.8:ENST00000414836.1:ENST00000466462.5:ENST00000480406.6:ENST00000489806.5:ENST00000479678.1:ENST00000470933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.24133	4.68651	5.13169	0.00326918	8.60227e-5	0.0282494	0.00160731
chr12	124876288	124876387	13601151	0	-	0.434343	(0.42,0.455]	chr12	1071763	88	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000535005.5:ENST00000541661.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.24133	4.68651	5.13169	0.00326918	8.60227e-5	0.0282494	0.00160731
chr16	69341179	69341249	15723534	0	+	0.442857	(0.42,0.455]	chr16	1252007	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NIP7	ENSG00000132603.15	ENST00000563364.3:ENST00000254940.10:ENST00000254941.6:ENST00000565034.1:ENST00000567202.5:ENST00000562523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.24133	4.68651	5.13169	0.00326918	8.60227e-5	0.0282494	0.00160731
chr6	31860178	31860264	7662785	0	-	0.55814	(0.53,0.59]	chr6	585394	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	4.102	4.686435	5.27087	5.9416e-5	1.01285e-6	0.00130151	4.03248e-5
chr12	122094062	122094162	13122643	0	+	0.53	(0.49,0.53]	chr12	1024773	144	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.38192	4.68613	4.99034	0.00259709	1.6002e-4	0.0229695	0.00286408
chr20	63733018	63733118	17866313	0	+	0.51	(0.49,0.53]	chr20	1511163	4	SS3_PROX	SS3_PROX:INTRON	ZGPAT:RP4-583P15.15	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.38192	4.68613	4.99034	0.00259709	1.6002e-4	0.0229695	0.00286408
chr8	103420363	103420463	9527140	0	+	0.53	(0.49,0.53]	chr8	724337	2	CDS	CDS:EXON_MRNA:INTRON	DCAF13	ENSG00000164934.14	ENST00000297579.9:ENST00000616836.4:ENST00000521716.1:ENST00000521971.5:ENST00000618975.1:ENST00000521999.5:ENST00000612750.5:ENST00000518554.2:ENST00000519682.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.38192	4.68613	4.99034	0.00259709	1.6002e-4	0.0229695	0.00286408
chr19	1438884	1438892	17193275	0	+	0.375	(0.36,0.39]	chr19	1412193	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.24025	4.686055	6.13186	2.74161e-4	2.76105e-8	0.00406677	2.02995e-6
chr10	102162928	102163022	11226689	0	+	0.297872	(0.29,0.33]	chr10	854877	8	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.24387	4.68585	5.12783	0.00263476	5.31593e-5	0.0239118	0.00108035
chr16	81525910	81526010	15770203	0	+	0.38	(0.36,0.39]	chr16	1255450	54	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98025	4.68565	5.39105	0.00881716	7.73826e-6	0.0562439	2.43421e-4
chr6	149378867	149378960	7480752	0	+	0.408602	(0.39,0.42]	chr6	571632	1	CDS	CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	3.3592	4.685555	6.01191	2.70719e-5	2.69432e-7	6.90257e-4	1.30302e-5
chr19	43774362	43774447	17580626	0	-	0.694118	(0.59,1]	chr19	1479122	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000599720.5:ENST00000601549.2:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	107	2	3.25489	4.685515	6.11614	8.68018e-5	1.0124e-5	0.0016165	3.04701e-4
chr8	70573693	70573788	9881272	0	-	0.284211	[0,0.29]	chr8	746911	6	UTR3	UTR3:EXON_MRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	4.43339	4.685135000000001	4.93688	6.49104e-9	3.96363e-10	5.83895e-7	4.61407e-8
chr7	102473471	102473559	8954807	0	-	0.522727	(0.49,0.53]	chr7	685025	5	UTR3	UTR3:EXON_MRNA	POLR2J	ENSG00000005075.15	ENST00000292614.9	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.35841	4.685015	6.01162	1.37225e-4	3.55916e-7	0.00253405	1.64926e-5
chr17	28553568	28553661	16485691	0	-	0.397849	(0.39,0.42]	chr17	1347682	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	3.14527	4.6849	6.22453	5.33048e-4	5.19291e-8	0.00742114	3.1902e-6
chr1	21880655	21880745	891286	0	-	0.655556	(0.59,1]	chr1	92557	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.85874	4.68463	5.51052	0.00019737500000000001	1.44531e-5	0.00336487	3.72961e-4
chr18	670691	670779	16717024	0	+	0.568182	(0.53,0.59]	chr18	1379297	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	3.53093	4.68412	5.8373100000000004	7.41975e-6	2.06883e-6	2.3596e-4	7.35008e-5
chr5	104381633	104381732	6136619	0	+	0.313131	(0.29,0.33]	chr5	479701	312	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	4.41812	4.684085	4.95005	0.00162106	9.78718e-5	0.0161179	0.0019344
chr15	68779017	68779113	15359847	0	-	0.40625	(0.39,0.42]	chr15	1213200	6	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	3.3111	4.684055	6.05701	2.11919e-4	1.91744e-7	0.00357806	9.81202e-6
chr3	13319071	13319155	4046213	0	-	0.678571	(0.59,1]	chr3	339518	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	3.13288	4.683825000000001	6.23477	1.67777e-4	5.29741e-6	0.00273359	1.78149e-4
chr11	5346875	5346910	12241566	0	-	0.342857	(0.33,0.36]	chr11	946178	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	50	2	2.7655	4.68357	6.60164	0.0175892	1.09692e-9	0.0918323	1.13492e-7
chr17	44374411	44374470	16558008	0	-	0.627119	(0.59,1]	chr17	1359418	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.57037	4.682435	4.7945	0.0054994	0.0031766	0.0402071	0.0279054
chr1	22086668	22086724	93028	0	+	0.5	(0.49,0.53]	chr1	10790	1	CDS	CDS:UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000651171.1:ENST00000652582.1:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	101	2	3.93377	4.682024999999999	5.43028	3.06483e-6	9.03974e-10	1.13887e-4	9.62406e-8
chr15	28315813	28315895	14838073	0	+	0.512195	(0.49,0.53]	chr15	1164300	3	EXON_PSEUDO	EXON_PSEUDO	RPL41P2	ENSG00000256338.2	ENST00000544920.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	356	2	4.38826	4.68187	4.97548	1.15534e-11	1e-12	2.17994e-9	2.25522e-10
chr2	10129773	10129869	1629052	0	+	0.354167	(0.33,0.36]	chr2	161739	5	UTR3	UTR3:EXON_MRNA:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	3.95366	4.681605	5.40955	1.14206e-5	3.77669e-6	3.08108e-4	1.34044e-4
chr3	128638010	128638105	4441493	0	-	0.484211	(0.455,0.49]	chr3	369027	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000479113.1:ENST00000476931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	294	2	3.89484	4.68159	5.46834	6.63217e-8	1e-12	4.34166e-6	2.25522e-10
chr19	38626027	38626102	17322794	0	+	0.56	(0.53,0.59]	chr19	1434230	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000586932.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000588422.3:ENST00000592558.1:ENST00000588299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	352	2	3.71588	4.68157	5.64726	4.12244e-8	1e-12	2.89337e-6	2.25522e-10
chr12	55725811	55725896	13347071	0	-	0.552941	(0.53,0.59]	chr12	1050331	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000548117.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000555199.1:ENST00000552164.5:ENST00000551173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	253	2	4.08811	4.68147	5.27483	5.33673e-10	3.5317e-11	6.01969e-8	5.95861e-9
chr11	88328166	88328185	12533420	0	-	0.263158	[0,0.29]	chr11	972572	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000676529.1:ENST00000677106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.29246	4.681455	5.07045	0.00254021	5.08054e-5	0.0227257	0.00114377
chr19	583025	583119	17188342	0	+	0.648936	(0.59,1]	chr19	1410791	3	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	109	2	3.41002	4.681345	5.95267	3.61752e-5	2.38682e-5	7.90632e-4	6.18922e-4
chr14	102696092	102696192	14499715	0	+	0.39	(0.36,0.39]	chr14	1133588	7	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.24194	4.68124	5.12054	0.00276729	7.15553e-5	0.0247437	0.00137393
chr1	148105680	148105767	1278195	0	-	0.436782	(0.42,0.455]	chr1	126623	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF11	ENSG00000263956.7	ENST00000614785.4:ENST00000614015.4:ENST00000615281.4:ENST00000682118.1:ENST00000614506.4:ENST00000613531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.25028	4.68123	5.11218	0.00406761	6.01815e-5	0.032143	0.00130886
chr11	78106806	78106885	12477777	0	-	0.43038	(0.42,0.455]	chr11	970710	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	4.34333	4.681195	5.01906	5.37112e-6	3.33906e-8	1.79904e-4	2.18399e-6
chr1	25306595	25306662	103809	0	+	0.567164	(0.53,0.59]	chr1	12160	1	CDS	CDS:EXON_MRNA:INTRON	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	4.31894	4.68096	5.04298	1.91383e-4	7.82085e-6	0.0032874	2.24148e-4
chr12	54240756	54240855	13342934	0	-	0.535354	(0.53,0.59]	chr12	1049602	94	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	4.31894	4.68096	5.04298	1.91383e-4	7.82085e-6	0.0032874	2.24148e-4
chr2	63606887	63606965	1850144	0	+	0.371795	(0.36,0.39]	chr2	175443	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6:ENST00000495083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	4.37423	4.68083	4.98743	8.82225e-5	4.42053e-6	0.00178337	1.39924e-4
chr12	49273227	49273278	12865720	0	+	0.392157	(0.39,0.42]	chr12	999065	1	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	132	2	4.20311	4.6807099999999995	5.15831	2.68344e-8	6.02099e-11	1.98056e-6	8.66949e-9
chr1	201006885	201006984	1445386	0	-	0.494949	(0.49,0.53]	chr1	144921	8	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.4415	4.680425	5.91935	9.98297e-4	5.27035e-7	0.0111246	2.57927e-5
chr3	113795875	113795939	3675976	0	+	0.453125	(0.42,0.455]	chr3	314473	1	CDS	CDS:UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.40276	4.679679999999999	4.9566	0.0017618	2.10615e-4	0.0180053	0.00327655
chr3	128055690	128055751	3725036	0	+	0.42623	(0.42,0.455]	chr3	318464	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000481210.5:ENST00000243253.8:ENST00000491668.1:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.40276	4.679679999999999	4.9566	0.0017618	2.10615e-4	0.0180053	0.00327655
chr5	42808201	42808253	6558638	0	-	0.423077	(0.42,0.455]	chr5	508262	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SELENOP	ENSG00000250722.6	ENST00000514985.6:ENST00000512980.5:ENST00000511224.5:ENST00000506577.5:ENST00000507920.5:ENST00000509276.5:ENST00000514218.5:ENST00000513303.5:ENST00000510965.1:ENST00000505309.1:ENST00000506078.5:ENST00000510650.5:ENST00000515626.5:ENST00000508937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.40276	4.679679999999999	4.9566	0.0017618	2.10615e-4	0.0180053	0.00327655
chr12	53416053	53416151	12886229	0	+	0.367347	(0.36,0.39]	chr12	1002329	50	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.42503	4.67942	4.93381	0.00133228	1.90009e-4	0.0144372	0.00302753
chr6	63615915	63616004	7764051	0	-	0.370787	(0.36,0.39]	chr6	595887	2	EXON_PSEUDO	EXON_PSEUDO	RPL9P18	ENSG00000213309.3	ENST00000439124.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.42503	4.67942	4.93381	0.00133228	1.90009e-4	0.0144372	0.00302753
chr17	47133072	47133172	16571184	0	-	0.22	[0,0.29]	chr17	1361107	3	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.59959	4.6794	4.75921	7.13769e-4	2.77035e-4	0.0085671400000000009	0.00444204
chr12	11884444	11884515	12736019	0	+	0.464789	(0.455,0.49]	chr12	990097	1	CDS	CDS:EXON_MRNA	ETV6	ENSG00000139083.11	ENST00000396373.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.58536	4.67927	4.77318	4.7888e-4	9.22269e-7	0.00628636	4.12764e-5
chr11	66366430	66366497	12424312	0	-	0.537313	(0.53,0.59]	chr11	964636	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.47419	4.6789950000000005	5.8838	8.75273e-4	1.51824e-6	0.0106963	5.67784e-5
chr15	64381371	64381444	15341553	0	-	0.520548	(0.49,0.53]	chr15	1211070	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	101	2	4.66585	4.67885	4.69185	5.39247e-7	6.32597e-9	2.63471e-5	5.20277e-7
chr1	160333602	160333677	1329145	0	-	0.493333	(0.49,0.53]	chr1	136104	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.94177	4.678685	5.4156	0.0104929	1.84143e-5	0.063428	4.53637e-4
chr1	231919441	231919541	756593	0	+	0.51	(0.49,0.53]	chr1	76741	529	INTRON	INTRON	DISC1	ENSG00000162946.23	ENST00000439617.8:ENST00000622252.4:ENST00000620189.3:ENST00000366637.8:ENST00000535983.5:ENST00000628350.2:ENST00000422590.6:ENST00000427560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.94177	4.678685	5.4156	0.0104929	1.84143e-5	0.063428	4.53637e-4
chr20	62278764	62278862	17861083	0	+	0.510204	(0.49,0.53]	chr20	1509921	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.94177	4.678685	5.4156	0.0104929	1.84143e-5	0.063428	4.53637e-4
chr7	103629939	103630018	8964593	0	-	0.506329	(0.49,0.53]	chr7	686298	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1:ENST00000473457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.94177	4.678685	5.4156	0.0104929	1.84143e-5	0.063428	4.53637e-4
chrX	48462966	48462980	19062785	0	-	0.5	(0.49,0.53]	chrX	1620410	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	28	2	3.94177	4.678685	5.4156	0.0104929	1.84143e-5	0.063428	4.53637e-4
chr1	6224680	6224780	842579	0	-	0.57	(0.53,0.59]	chr1	84936	36	UTR3	UTR3:EXON_MRNA	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5:ENST00000474756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.15805	4.67844	5.19883	0.00680952	8.7034e-5	0.0468196	0.00177086
chr22	39019271	39019369	18368456	0	+	0.540816	(0.53,0.59]	chr22	1562849	10	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	3.70393	4.6783850000000005	5.65284	1.64739e-5	1.76142e-10	4.57148e-4	2.24198e-8
chr1	52375514	52375599	1018713	0	-	0.588235	(0.53,0.59]	chr1	105574	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.16383	4.678355	5.19288	0.00659193	9.22873e-5	0.0454205	0.0016906
chr1	186334324	186334393	1411937	0	-	0.478261	(0.455,0.49]	chr1	142846	1	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.59599	4.678235	4.76048	3.99985e-4	9.38471e-7	0.00588767	3.79261e-5
chr6	30486404	30486497	7111187	0	+	0.505376	(0.49,0.53]	chr6	544740	6	EXON_PSEUDO	EXON_PSEUDO	RANP1	ENSG00000236603.2	ENST00000455094.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	241	2	4.36068	4.67817	4.99566	5.83043e-11	1.17828e-11	8.41941e-9	2.21522e-9
chr7	97853304	97853386	8940618	0	-	0.390244	(0.39,0.42]	chr7	682235	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	59	2	4.24807	4.67784	5.10761	5.12039e-5	2.68001e-7	0.00114668	1.29826e-5
chr22	39015594	39015672	18368415	0	+	0.435897	(0.42,0.455]	chr22	1562835	1	CDS	CDS:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	4.39894	4.67777	4.9566	2.10615e-4	3.61951e-6	0.00327655	1.29307e-4
chr6	73373107	73373185	7795157	0	-	0.384615	(0.36,0.39]	chr6	597080	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	OOEP:RPL39P3	ENSG00000203907.10:ENSG00000235174.1	ENST00000370363.5:ENST00000441145.1:ENST00000424573.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	8	188	2	3.97126	4.67774	5.38422	7.69174e-9	1e-12	6.78974e-7	2.25522e-10
chr6	27133041	27133071	7104124	0	+	0.566667	(0.53,0.59]	chr6	543281	1	UTR5	UTR5:EXON_MRNA	H2AC11	ENSG00000196787.3	ENST00000359193.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	4.4923	4.67731	4.86232	4.57805e-4	2.39218e-6	0.00608573	9.1799e-5
chrX	53379109	53379208	19076613	0	-	0.434343	(0.42,0.455]	chrX	1622486	51	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.16223	4.67725	6.19227	4.45084e-4	8.32224e-8	0.00633715	4.76997e-6
chr11	4126758	4126833	11774353	0	+	0.346667	(0.33,0.36]	chr11	901021	2	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5:ENST00000531591.5:ENST00000529109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	3.25183	4.677225	6.10262	3.87102e-4	8.18754e-8	0.00578322	4.71056e-6
chr11	63901633	63901697	11977668	0	+	0.4375	(0.42,0.455]	chr11	918488	2	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.70273	4.67706	5.65139	0.0215502	2.06893e-6	0.102904	8.11386e-5
chr12	113372738	113372807	13101571	0	+	0.550725	(0.53,0.59]	chr12	1022395	2	CDS	CDS:UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	4.00393	4.67703	5.35013	0.0108084	2.75928e-9	0.064368	2.54269e-7
chr18	12703022	12703107	16763342	0	+	0.694118	(0.59,1]	chr18	1382657	1	UTR5	UTR5:EXON_MRNA:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	4.34429	4.67687	5.00945	0.00149725	1.84713e-5	0.0159607	4.5469e-4
chr4	2394152	2394252	5284495	0	-	0.49	(0.455,0.49]	chr4	425572	294	INTRON	INTRON	ZFYVE28	ENSG00000159733.14	ENST00000290974.7:ENST00000511071.5:ENST00000509171.5:ENST00000503000.1:ENST00000508184.5	protein_coding	protein_coding	protein_coding	protein_coding	7	226	2	4.00799	4.6767199999999995	5.34545	1.52871e-7	1e-12	9.0748e-6	2.25522e-10
chr6	33272074	33272119	7121506	0	+	0.666667	(0.59,1]	chr6	547493	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	85	4383	2	4.60627	4.676425	4.74658	1.97908e-12	1e-12	4.48835e-10	2.25522e-10
chr3	133588122	133588199	3750847	0	+	0.480519	(0.455,0.49]	chr3	321179	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.76399	4.6763200000000005	6.58865	8.75629e-4	2.75015e-9	0.0106963	2.54234e-7
chr9	37861706	37861805	10257496	0	+	0.484848	(0.455,0.49]	chr9	772014	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DCAF10	ENSG00000122741.16	ENST00000242323.8:ENST00000377724.8:ENST00000483167.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	4.37693	4.67609	4.97525	1.38474e-4	4.5365e-6	0.00254294	1.42727e-4
chr1	160998771	160998870	1331426	0	-	0.535354	(0.53,0.59]	chr1	136426	37	UTR3	UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	3.29588	4.675985	6.05609	1.96478e-4	4.62627e-7	0.00335505	2.06661e-5
chr6	20493216	20493315	7075599	0	+	0.30303	(0.29,0.33]	chr6	541472	29	UTR3	UTR3:EXON_MRNA	E2F3	ENSG00000112242.15	ENST00000346618.8:ENST00000613242.4:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	4.35171	4.675845	4.99998	1.78604e-7	2.93757e-8	1.03973e-5	1.96184e-6
chr6	2889862	2889962	7570640	0	-	0.4	(0.39,0.42]	chr6	577661	27	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.4261	4.67584	5.92558	0.00107164	2.00458e-7	0.0118238	1.13771e-5
chr16	21962822	21962885	15586816	0	+	0.492063	(0.49,0.53]	chr16	1235441	2	CDS	CDS:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000567597.1:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.95291	4.6757550000000005	6.3986	0.00119735	1.75841e-8	0.0134293	1.26398e-6
chr2	241229502	241229600	3250548	0	-	0.510204	(0.49,0.53]	chr2	286983	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000484412.1:ENST00000442730.1:ENST00000494862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	3.88731	4.675025	5.46274	1.13094e-5	4.40111e-6	3.3464e-4	1.3969e-4
chr1	35609342	35609408	938399	0	-	0.530303	(0.53,0.59]	chr1	98707	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	112	2	4.57862	4.67484	4.77106	3.13573e-7	2.22391e-8	1.66999e-5	1.54405e-6
chr12	4097647	4097745	12704107	0	+	0.459184	(0.455,0.49]	chr12	985492	3	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.20189	4.674815	5.14774	0.00397662	7.45457e-5	0.0322851	0.00142165
chr6	143284167	143284225	7447135	0	+	0.482759	(0.455,0.49]	chr6	569880	2	CDS	CDS:EXON_MRNA	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.20189	4.674815	5.14774	0.00397662	7.45457e-5	0.0322851	0.00142165
chr7	117130490	117130548	8480011	0	+	0.465517	(0.455,0.49]	chr7	647640	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000465133.5:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.20189	4.674815	5.14774	0.00397662	7.45457e-5	0.0322851	0.00142165
chr7	128570240	128570329	9059374	0	-	0.550562	(0.53,0.59]	chr7	691466	1	EXON_PSEUDO	EXON_PSEUDO	RP11-212P7.1	ENSG00000213280.2	ENST00000393266.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	118	2	3.28719	4.674655	6.06212	7.29367e-7	4.23179e-7	3.04856e-5	2.1371e-5
chr4	135046651	135046750	5119840	0	+	0.454545	(0.42,0.455]	chr4	414782	13	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	65	2	4.05954	4.674530000000001	5.2895200000000004	0.00617886	3.1296e-9	0.0439741	2.83747e-7
chr12	56300305	56300391	13350148	0	-	0.674419	(0.59,1]	chr12	1051084	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CS:RP11-977G19.10	ENSG00000062485.19:ENSG00000144785.8	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000552688.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5:ENST00000549318.5:ENST00000547423.5:ENST00000550996.1:ENST00000550700.1:ENST00000551441.5:ENST00000548360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	187	2	4.58853	4.67443	4.76033	5.46127e-6	3.8808e-8	1.8199e-4	2.48202e-6
chr3	33051943	33052004	4111506	0	-	0.459016	(0.455,0.49]	chr3	343493	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	136	2	3.73589	4.67436	5.61283	2.30579e-4	1e-12	0.00382267	2.25522e-10
chr16	31093311	31093396	15916958	0	-	0.458824	(0.455,0.49]	chr16	1275816	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000533518.5:ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3:ENST00000394971.7:ENST00000498155.1:ENST00000472468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	90	2	4.42606	4.674045	4.92203	7.22227e-8	5.55152e-8	4.22134e-6	3.70941e-6
chr11	90283792	90283887	12059337	0	+	0.578947	(0.53,0.59]	chr11	929980	14	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	14	435	2	4.57042	4.673485	4.77655	3.7419e-12	1e-12	7.86299e-10	2.25522e-10
chr6	27505768	27505868	7649423	0	-	0.5	(0.49,0.53]	chr6	582784	93	INTRON	INTRON	XXbac-BPGBPG34I8.3	ENSG00000285703.1	ENST00000648816.1	lncRNA	lncRNA	lncRNA	lncRNA	269	6879	2	4.58009	4.67328	4.76647	1e-12	1e-12	2.46312e-10	2.25522e-10
chr4	144001184	144001242	5696340	0	-	0.396552	(0.39,0.42]	chr4	451490	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	3.88511	4.6732700000000005	5.46143	4.76776e-6	5.62612e-10	1.64158e-4	6.28917e-8
chr1	42412397	42412496	965818	0	-	0.434343	(0.42,0.455]	chr1	101602	1	EXON_PSEUDO	EXON_PSEUDO	RP11-157D18.2	ENSG00000235002.1	ENST00000411908.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	3.8515	4.67289	5.49428	0.0119089	1.07978e-5	0.0686664	2.9314e-4
chr17	42201244	42201343	16546631	0	-	0.454545	(0.42,0.455]	chr17	1357142	22	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.8515	4.67289	5.49428	0.0119089	1.07978e-5	0.0686664	2.9314e-4
chrX	108088751	108088850	19163763	0	-	0.434343	(0.42,0.455]	chrX	1629979	1	CDS	CDS:EXON_MRNA:INTRON	PSMD10	ENSG00000101843.19	ENST00000217958.8:ENST00000372296.5:ENST00000372295.5:ENST00000361815.9:ENST00000340200.5:ENST00000553388.1:ENST00000338548.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.8515	4.67289	5.49428	0.0119089	1.07978e-5	0.0686664	2.9314e-4
chr18	35710556	35710654	16824746	0	+	0.336735	(0.33,0.36]	chr18	1387498	9	UTR3	UTR3:EXON_MRNA	GALNT1	ENSG00000141429.14	ENST00000269195.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.51378	4.672879999999999	4.83198	0.00118147	1.88689e-4	0.0127276	0.0032588
chr7	127362769	127362868	9057407	0	-	0.343434	(0.33,0.36]	chr7	691089	31	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:AC000123.2	ENSG00000048405.10:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	0	20	2	4.51378	4.672879999999999	4.83198	0.00118147	1.88689e-4	0.0127276	0.0032588
chr9	18351331	18351431	10208994	0	+	0.34	(0.33,0.36]	chr9	767443	1870	INTRON	INTRON	ADAMTSL1	ENSG00000178031.18	ENST00000680146.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.51378	4.672879999999999	4.83198	0.00118147	1.88689e-4	0.0127276	0.0032588
chr13	95206531	95206614	14111254	0	-	0.566265	(0.53,0.59]	chr13	1104448	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	3.82407	4.6728749999999994	5.52168	0.0179666	1.48967e-5	0.0918323	3.81697e-4
chr17	44872445	44872507	16560142	0	-	0.548387	(0.53,0.59]	chr17	1359767	1	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000591856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	3.82407	4.6728749999999994	5.52168	0.0179666	1.48967e-5	0.0918323	3.81697e-4
chr22	42627604	42627688	18524421	0	-	0.547619	(0.53,0.59]	chr22	1581958	1	CDS	CDS:EXON_MRNA	CYB5R3	ENSG00000100243.21	ENST00000352397.10:ENST00000361740.8:ENST00000407623.7:ENST00000407332.5:ENST00000470741.1:ENST00000402438.5:ENST00000438270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	3.82407	4.6728749999999994	5.52168	0.0179666	1.48967e-5	0.0918323	3.81697e-4
chr11	119335956	119336048	12163907	0	+	0.706522	(0.59,1]	chr11	938092	9	CDS	CDS:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.44671	4.67264	4.89857	0.00931497	0.00182139	0.0586162	0.0176016
chr10	22536417	22536515	11411114	0	-	0.612245	(0.59,1]	chr10	869854	17	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.47517	4.672470000000001	4.86977	0.00735659	0.00246014	0.0491503	0.0230058
chr12	57721001	57721094	12904351	0	+	0.655914	(0.59,1]	chr12	1005910	2	UTR3	UTR3:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.47517	4.672470000000001	4.86977	0.00735659	0.00246014	0.0491503	0.0230058
chr11	902961	903013	12228657	0	-	0.557692	(0.53,0.59]	chr11	943988	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5:ENST00000533056.5:ENST00000533059.5:ENST00000530939.5:ENST00000525225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.30195	4.672465	5.04298	0.00421989	1.91383e-4	0.0328662	0.0032874
chr16	21655432	21655529	15585604	0	+	0.57732000000000006	(0.53,0.59]	chr16	1235205	1	UTR3	UTR3:EXON_MRNA	METTL9	ENSG00000197006.14	ENST00000396014.8:ENST00000358154.8:ENST00000615720.4:ENST00000564733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.30776	4.6724049999999995	5.03705	0.00407289	0.00020199200000000001	0.0324137	0.00317801
chr3	52229685	52229782	4182412	0	-	0.57732000000000006	(0.53,0.59]	chr3	352589	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-330H6.5:TWF2	ENSG00000173366.11:ENSG00000247596.10	ENST00000494383.1:ENST00000478201.1:ENST00000305533.10:ENST00000678838.1:ENST00000678352.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000679180.1:ENST00000678700.1:ENST00000676552.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.30776	4.6724049999999995	5.03705	0.00407289	0.00020199200000000001	0.0324137	0.00317801
chr6	26216452	26216543	7647241	0	-	0.494505	(0.49,0.53]	chr6	582558	2	CDS	CDS:EXON_MRNA	H2BC8	ENSG00000273802.2	ENST00000541790.3	protein_coding	protein_coding	protein_coding	protein_coding	12	325	2	4.17525	4.67226	5.16927	1.41884e-10	1e-12	1.84764e-8	2.46312e-10
chr1	25391993	25392067	904091	0	-	0.527027	(0.49,0.53]	chr1	94032	1	CDS	CDS:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	4.17834	4.6719550000000005	5.16557	6.36135e-5	1.74561e-5	0.00136069	4.38078e-4
chr7	103364224	103364307	8441675	0	+	0.506024	(0.49,0.53]	chr7	645106	2	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	4.17834	4.6719550000000005	5.16557	6.36135e-5	1.74561e-5	0.00136069	4.38078e-4
chr9	35060383	35060454	10638100	0	-	0.492958	(0.49,0.53]	chr9	804511	2	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	4.17834	4.6719550000000005	5.16557	6.36135e-5	1.74561e-5	0.00136069	4.38078e-4
chr1	21880745	21880835	891287	0	-	0.666667	(0.59,1]	chr1	92557	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	148	2	1.87624	4.67192	7.4676	0.0194045	9.80416e-10	0.0944333	1.03027e-7
chr19	35160765	35160801	17303804	0	+	0.5	(0.49,0.53]	chr19	1430615	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	3.47167	4.67179	5.87191	6.95049e-5	9.67449e-7	0.00147069	3.88631e-5
chr1	161853223	161853323	502753	0	+	0.37	(0.36,0.39]	chr1	54554	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1:ENST00000476437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	3.63747	4.67178	5.70609	3.12796e-6	8.51693e-7	1.0463e-4	3.87319e-5
chr8	100706727	100706805	9975975	0	-	0.589744	(0.53,0.59]	chr8	752664	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519848.1:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	61	1793	2	4.62285	4.6716549999999994	4.72046	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	27837946	27838046	7649620	0	-	0.57	(0.53,0.59]	chr6	582815	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	2.56695	4.6715599999999995	6.77617	2.3382e-4	1.61388e-9	0.00385436	1.60735e-7
chr6	27892856	27892952	7649680	0	-	0.635417	(0.59,1]	chr6	582847	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	H3C12:H2AC17	ENSG00000197153.5:ENSG00000278677.2	ENST00000479986.1:ENST00000359611.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	215	2	4.15221	4.671279999999999	5.19035	4.2076e-7	9.19048e-8	2.13696e-5	5.19338e-6
chr6	32155029	32155106	7118440	0	+	0.597403	(0.59,1]	chr6	546917	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.62482	4.67071	5.7166	7.40647e-4	5.56053e-5	0.00925967	0.0011271
chr20	29741585	29741661	17937896	0	-	0.421053	(0.42,0.455]	chr20	1518801	2	EXON_SMALL	EXON_SMALL	5_8S_rRNA	ENSG00000283291.1	ENST00000638132.1	rRNA	rRNA	rRNA	rRNA	1	61	2	2.57051	4.670575	6.77064	0.0265466	6.24308e-10	0.120071	6.87794e-8
chr2	33188576	33188667	1720703	0	+	0.417582	(0.39,0.42]	chr2	168669	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000432635.1:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.70591	4.67032	6.63473	0.0185716	1.60065e-9	0.0932453	1.59782e-7
chr4	87137678	87137776	4941147	0	+	0.408163	(0.39,0.42]	chr4	405799	21	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.63883	4.6701049999999995	4.70138	5.68159e-4	4.11166e-7	0.0077844	1.87588e-5
chr7	20189758	20189858	8715384	0	-	0.39	(0.36,0.39]	chr7	665405	48	INTRON	INTRON	MACC1	ENSG00000183742.13	ENST00000400331.10:ENST00000332878.8:ENST00000471019.1:ENST00000483317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	4.32265	4.6696100000000005	5.01657	6.3224e-6	2.48224e-8	1.88366e-4	1.84654e-6
chr1	219968667	219968736	1510660	0	-	0.26087	[0,0.29]	chr1	150952	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000468487.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.63488	4.669575	5.70427	7.12896e-4	1.20169e-6	0.00897774	4.6687e-5
chr18	12725670	12725740	16763579	0	+	0.257143	[0,0.29]	chr18	1382699	3	UTR3	UTR3:EXON_MRNA	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000317615.11:ENST00000588824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.63488	4.669575	5.70427	7.12896e-4	1.20169e-6	0.00897774	4.6687e-5
chr15	79322114	79322214	15043039	0	+	0.52	(0.49,0.53]	chr15	1183523	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMED3	ENSG00000166557.14	ENST00000299705.10:ENST00000424155.6:ENST00000536821.5:ENST00000543455.1:ENST00000558562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	3.73494	4.66948	5.60402	0.0189345	5.78803e-6	0.0934721	1.75119e-4
chr17	82237798	82237893	16382692	0	+	0.673684	(0.59,1]	chr17	1332454	8	CDS	CDS:EXON_MRNA:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000578684.6:ENST00000577650.6:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.2353	4.66938	5.10346	0.0165254	8.40506e-4	0.0873033	0.00981548
chr2	219172950	219173039	3191063	0	-	0.629214	(0.59,1]	chr2	280738	4	CDS	CDS:EXON_MRNA	CNPPD1	ENSG00000115649.16	ENST00000360507.10:ENST00000409789.5:ENST00000453038.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.2353	4.66938	5.10346	0.0165254	8.40506e-4	0.0873033	0.00981548
chr8	66925541	66925596	9866677	0	-	0.636364	(0.59,1]	chr8	745986	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG6	ENSG00000245910.8	ENST00000520944.5:ENST00000520619.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.2353	4.66938	5.10346	0.0165254	8.40506e-4	0.0873033	0.00981548
chr19	4538221	4538312	17432449	0	-	0.615385	(0.59,1]	chr19	1455209	3	CDS	CDS:EXON_MRNA:INTRON	CTB-50L17.14:LRG1	ENSG00000267385.1:ENSG00000171236.10	ENST00000586020.1:ENST00000306390.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.26354	4.669035	5.07453	0.0134233	0.00117617	0.0743429	0.0132131
chr22	42067764	42067850	18520791	0	-	0.627907	(0.59,1]	chr22	1581529	1	CDS	CDS:EXON_MRNA	NAGA	ENSG00000198951.12	ENST00000396398.8:ENST00000403363.5:ENST00000402937.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.26354	4.669035	5.07453	0.0134233	0.00117617	0.0743429	0.0132131
chr1	154378794	154378892	1302978	0	-	0.530612	(0.53,0.59]	chr1	131245	7	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	RP11-350G8.4:RPSAP17	ENSG00000237920.2:ENSG00000226855.1	ENST00000449634.2:ENST00000437336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	0	29	2	4.00393	4.66872	5.33351	0.0108084	4.35359e-5	0.064368	0.00091744700000000005
chr9	136209095	136209185	10888822	0	-	0.577778	(0.53,0.59]	chr9	826968	4	CDS	CDS:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.00393	4.66872	5.33351	0.0108084	4.35359e-5	0.064368	0.00091744700000000005
chr15	30045104	30045200	14842951	0	+	0.625	(0.59,1]	chr15	1164924	5	EXON_PSEUDO	EXON_PSEUDO	SYNGR2P1	ENSG00000260174.1	ENST00000569699.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	38	2	3.84557	4.668705	5.49184	0.0410704	1.61513e-4	0.163285	0.00265627
chr3	48600679	48600759	4168717	0	-	0.525	(0.49,0.53]	chr3	349584	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000480561.5:ENST00000415995.5:ENST00000460105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.11892	4.668485	6.21805	0.00398244	7.46967e-8	0.0322851	4.33833e-6
chr6	4812900	4813000	7020602	0	+	0.28	[0,0.29]	chr6	538398	357	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	3.91571	4.668305	5.4209	1.5798e-4	8.29716e-6	0.00285004	2.36305e-4
chr17	78216663	78216722	16367987	0	+	0.440678	(0.42,0.455]	chr17	1329639	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1:ENST00000589892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.31161	4.66821	6.0248100000000004	0.00186138	2.97136e-7	0.018635	1.42027e-5
chr5	176494183	176494275	6402543	0	+	0.445652	(0.42,0.455]	chr5	497357	1	CDS	CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000504983.1:ENST00000513627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.31161	4.66821	6.0248100000000004	0.00186138	2.97136e-7	0.018635	1.42027e-5
chr1	21855522	21855598	890988	0	-	0.671053	(0.59,1]	chr1	92406	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	4.45031	4.668184999999999	4.88606	1.2083e-5	6.99048e-7	3.52389e-4	2.94405e-5
chr1	43977695	43977790	169387	0	+	0.473684	(0.455,0.49]	chr1	21856	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.36307	4.667825	4.97258	0.00218641	1.84876e-4	0.0208941	0.00296795
chr12	49032768	49032867	13323304	0	-	0.484848	(0.455,0.49]	chr12	1045457	17	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.36307	4.667825	4.97258	0.00218641	1.84876e-4	0.0208941	0.00296795
chr9	129804160	129804249	10487032	0	+	0.460674	(0.455,0.49]	chr9	791727	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1B	ENSG00000136816.16	ENST00000486372.1:ENST00000259339.7:ENST00000427860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.36307	4.667825	4.97258	0.00218641	1.84876e-4	0.0208941	0.00296795
chrX	110177492	110177590	18820981	0	+	0.489796	(0.455,0.49]	chrX	1603939	42	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.36307	4.667825	4.97258	0.00218641	1.84876e-4	0.0208941	0.00296795
chr19	12643644	12643737	17469627	0	-	0.516129	(0.49,0.53]	chr19	1462695	5	EXON_PSEUDO	EXON_PSEUDO	RPL10P16	ENSG00000178464.6	ENST00000325000.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	25	566	2	4.00813	4.66781	5.32749	3.12927e-12	1e-12	6.22078e-10	2.46312e-10
chr1	185131335	185131435	1410244	0	-	0.33	(0.29,0.33]	chr1	142522	22	INTRON	INTRON	TRMT1L	ENSG00000121486.12	ENST00000367506.10:ENST00000458395.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.63974	4.66752	4.6953	4.88271e-4	4.81181e-4	0.00677016	0.00638318
chr20	50584463	50584560	17816227	0	+	0.309278	(0.29,0.33]	chr20	1507152	19	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.63974	4.66752	4.6953	4.88271e-4	4.81181e-4	0.00677016	0.00638318
chr3	150627857	150627956	3808253	0	+	0.323232	(0.29,0.33]	chr3	325104	3	UTR3	UTR3:EXON_MRNA	SELENOT	ENSG00000198843.13	ENST00000615547.4:ENST00000471696.6:ENST00000485923.1:ENST00000466234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.63974	4.66752	4.6953	4.88271e-4	4.81181e-4	0.00677016	0.00638318
chr21	34096472	34096570	18104981	0	+	0.540816	(0.53,0.59]	chr21	1534981	13	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	87	2	3.4906	4.66696	5.84332	2.35913e-6	1.90853e-6	8.27472e-5	7.59317e-5
chr1	21857104	21857195	891008	0	-	0.593407	(0.59,1]	chr1	92416	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.97118	4.666605	5.36203	3.74697e-4	1.3379e-4	0.00560631	0.00229039
chrX	154779176	154779276	19279807	0	-	0.46	(0.455,0.49]	chrX	1638725	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000482757.1:ENST00000439370.5:ENST00000393531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	282	2	3.93999	4.66657	5.39315	1.07788e-9	1e-12	1.22093e-7	2.25522e-10
chr17	82850520	82850619	16386367	0	+	0.535354	(0.53,0.59]	chr17	1332978	40	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.66348	4.6664200000000005	4.66936	0.00107799	0.00103174	0.0121443	0.0118238
chr2	27206025	27206090	2569425	0	-	0.569231	(0.53,0.59]	chr2	231220	1	CDS	CDS:UTR3:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000464538.1:ENST00000445802.5:ENST00000412471.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.66348	4.6664200000000005	4.66936	0.00107799	0.00103174	0.0121443	0.0118238
chr5	70764994	70765093	6023892	0	+	0.363636	(0.36,0.39]	chr5	471993	134	INTRON	INTRON	GUSBP16	ENSG00000253366.3	ENST00000505516.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	21	2	4.5987	4.66608	4.73346	9.0208e-4	3.2963e-4	0.0102618	0.00504024
chr17	63579336	63579392	16317442	0	+	0.410714	(0.39,0.42]	chr17	1323647	1	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.93996	4.66592	5.39188	0.00841622	1.75441e-5	0.054565	4.38078e-4
chr4	137988082	137988181	5121510	0	+	0.40404	(0.39,0.42]	chr4	414874	352	INTRON	INTRON	RP11-8P17.2	ENSG00000287144.1	ENST00000655176.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	3.93996	4.66592	5.39188	0.00841622	1.75441e-5	0.054565	4.38078e-4
chr17	81855452	81855505	16709626	0	-	0.584906	(0.53,0.59]	chr17	1377714	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	361	2	4.35914	4.6655750000000005	4.97201	1.35059e-7	1e-12	8.11106e-6	2.25522e-10
chr11	902238	902330	12228648	0	-	0.565217	(0.53,0.59]	chr11	943982	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5:ENST00000533056.5:ENST00000533059.5:ENST00000530939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	3.92573	4.66535	5.40497	8.62301e-5	2.83308e-5	0.00160749	7.12614e-4
chr19	12668515	12668615	17469923	0	-	0.52	(0.49,0.53]	chr19	1462820	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	4.62574	4.6653	4.70486	7.86745e-7	3.98937e-7	3.25904e-5	2.04083e-5
chr10	124400911	124400984	11729285	0	-	0.356164	(0.33,0.36]	chr10	895048	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.63456	4.665205	6.69585	0.00707461	4.53486e-10	0.0478528	5.19925e-8
chr9	100020673	100020731	10772922	0	-	0.37931	(0.36,0.39]	chr9	815457	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.69835	4.66489	5.63143	3.2708e-4	3.24005e-6	0.00502339	1.07746e-4
chr7	12383535	12383601	8683515	0	-	0.424242	(0.42,0.455]	chr7	664054	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	114	2	4.52801	4.664555	4.8011	2.63804e-8	1.63291e-9	1.78642e-6	1.75357e-7
chr7	16776110	16776210	8149425	0	+	0.48	(0.455,0.49]	chr7	622189	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSPAN13	ENSG00000106537.8	ENST00000262067.5:ENST00000466195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.92463	4.664165	5.4037	0.0113417	1.20695e-5	0.0665375	3.52389e-4
chr12	112022269	112022363	13094255	0	+	0.617021	(0.59,1]	chr12	1021471	1	CDS	CDS:UTR3:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	6	325	2	4.00406	4.663815	5.32357	2.21989e-7	8.97735e-10	1.10798e-5	1.04639e-7
chr7	12380650	12380733	8683485	0	-	0.566265	(0.53,0.59]	chr7	664048	3	CDS	CDS:UTR3:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	147	2	3.89563	4.6638	5.43197	9.05923e-8	1.3341e-9	5.73229e-6	1.35579e-7
chr16	1320173	1320228	15486384	0	+	0.472727	(0.455,0.49]	chr16	1225657	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000568288.5:ENST00000567383.6:ENST00000403747.6:ENST00000568209.5:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000567074.6:ENST00000402301.5:ENST00000677314.1:ENST00000566775.2:ENST00000679137.1:ENST00000677987.1:ENST00000568989.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.81624	4.663335	5.51043	1.48205e-4	9.08728e-6	0.00269793	2.53877e-4
chr20	1278255	1278355	17646621	0	+	0.43	(0.42,0.455]	chr20	1491668	111	INTRON	INTRON	RAD21L1:SNPH	ENSG00000244588.6:ENSG00000101298.15	ENST00000402452.5:ENST00000649598.1:ENST00000381867.6:ENST00000381873.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.52594	4.66329	4.80064	0.00144145	3.0479e-4	0.0147046	0.00472028
chr3	13327289	13327363	4046303	0	-	0.662162	(0.59,1]	chr3	339552	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	2	139	2	4.21445	4.66325	5.11205	4.37862e-5	1.56798e-7	0.00101529	8.23767e-6
chr5	154817507	154817605	6315046	0	+	0.244898	[0,0.29]	chr5	492515	36	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.36183	4.66307	4.96431	0.00170062	1.20737e-4	0.01759	0.00210079
chr14	68421896	68421996	14684577	0	-	0.44	(0.42,0.455]	chr14	1149918	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP6	ENSG00000258477.1	ENST00000557078.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.64624	4.663024999999999	4.67981	8.75333e-4	5.38444e-4	0.0101169	0.00744072
chr3	51387807	51387878	3473935	0	+	0.450704	(0.42,0.455]	chr3	303588	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MANF	ENSG00000145050.19	ENST00000528157.7:ENST00000446668.5:ENST00000470900.1:ENST00000649711.1:ENST00000482262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.64624	4.663024999999999	4.67981	8.75333e-4	5.38444e-4	0.0101169	0.00744072
chr5	75343908	75343964	6036976	0	+	0.303571	(0.29,0.33]	chr5	473595	2	CDS	CDS:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000509431.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.31653	4.66277	6.00901	0.00261621	1.36977e-7	0.0238929	7.34618e-6
chr1	19222763	19222834	877171	0	-	0.549296	(0.53,0.59]	chr1	90437	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000486405.1:ENST00000494770.6:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.55274	4.66248	4.77222	0.00167999	6.67251e-4	0.0164993	0.00867533
chr2	239916288	239916388	3244911	0	-	0.4	(0.39,0.42]	chr2	285963	29	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.1206	4.662475	5.20435	0.00597537	2.91423e-5	0.0428562	7.26551e-4
chr1	20501329	20501419	882068	0	-	0.544444	(0.53,0.59]	chr1	91076	7	CDS	CDS:EXON_MRNA	MUL1	ENSG00000090432.7	ENST00000264198.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.5586	4.662465	4.76633	0.00161229	6.98999e-4	0.0169168	0.00846751
chr1	203709461	203709542	669560	0	+	0.54321	(0.53,0.59]	chr1	67444	3	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.5586	4.662465	4.76633	0.00161229	6.98999e-4	0.0169168	0.00846751
chr22	41653528	41653609	18381608	0	+	0.54321	(0.53,0.59]	chr22	1564711	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.5586	4.662465	4.76633	0.00161229	6.98999e-4	0.0169168	0.00846751
chr22	41661330	41661387	18381690	0	+	0.45614	(0.455,0.49]	chr22	1564729	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2:ENST00000478914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.0204	4.662155	5.30391	0.00736097	3.12735e-5	0.0490627	6.97306e-4
chr5	133980728	133980804	6843355	0	-	0.460526	(0.455,0.49]	chr5	523584	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000425992.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.0204	4.662155	5.30391	0.00736097	3.12735e-5	0.0490627	6.97306e-4
chr6	13622461	13622492	7605066	0	-	0.483871	(0.455,0.49]	chr6	580003	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RANBP9	ENSG00000010017.13	ENST00000011619.6:ENST00000469916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.0204	4.662155	5.30391	0.00736097	3.12735e-5	0.0490627	6.97306e-4
chrX	66173659	66173730	18717347	0	+	0.56338	(0.53,0.59]	chrX	1596958	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	85	2	4.4133	4.66193	4.91056	4.11992e-6	1.08461e-7	1.44702e-4	5.98453e-6
chr3	196072002	196072073	4663385	0	-	0.366197	(0.36,0.39]	chr3	385629	1	CDS	CDS:UTR3:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	511	2	4.30801	4.661825	5.01564	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	55062705	55062794	14298024	0	+	0.539326	(0.53,0.59]	chr14	1117542	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.39416	4.6615	5.92884	0.00126006	1.11987e-6	0.013837	4.4003e-5
chr13	20961702	20961801	13633280	0	+	0.50505	(0.49,0.53]	chr13	1074745	5	EXON_PSEUDO	EXON_PSEUDO	RPSAP54	ENSG00000213621.3	ENST00000454001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	4.07719	4.661490000000001	5.24579	0.0074411	4.073e-5	0.0492519	9.64741e-4
chr19	11450608	11450698	17231282	0	+	0.588889	(0.53,0.59]	chr19	1419944	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000591510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	3.18707	4.66108	6.13509	3.55681e-4	2.62487e-7	0.00539248	1.27527e-5
chr3	13321584	13321667	4046241	0	-	0.53012	(0.53,0.59]	chr3	339530	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	5	209	2	3.4326	4.66099	5.88938	1.4648e-5	1e-12	4.12508e-4	2.25522e-10
chr19	53869751	53869838	17388618	0	+	0.528736	(0.49,0.53]	chr19	1446767	5	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000651087.1:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000448420.5:ENST00000391769.2:ENST00000391768.2:ENST00000414489.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.60476	4.660985	5.71721	4.52633e-4	2.77472e-6	0.00642319	9.47025e-5
chr18	62442526	62442626	16920909	0	+	0.62	(0.59,1]	chr18	1392627	6	EXON_PSEUDO	EXON_PSEUDO	ACTBP9	ENSG00000266920.1	ENST00000587663.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	122	2	2.61897	4.660895	6.70282	9.74438e-4	1.99877e-7	0.0116117	1.01475e-5
chr11	837301	837354	11759151	0	+	0.679245	(0.59,1]	chr11	898590	2	CDS	CDS:EXON_MRNA	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000529810.5:ENST00000526693.5:ENST00000532045.6:ENST00000527341.5:ENST00000530726.5:ENST00000528011.2:ENST00000530320.5:ENST00000532075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.17616	4.660845	6.14553	0.00434232	5.79142e-6	0.0339139	1.75119e-4
chr10	50311319	50311378	11486568	0	-	0.525424	(0.49,0.53]	chr10	876705	2	CDS	CDS:UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000602619.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.12263	4.66073	5.19883	0.00591451	6.30063e-5	0.0427941	0.00124286
chr3	33065462	33065506	4111648	0	-	0.5	(0.49,0.53]	chr3	343522	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.12263	4.66073	5.19883	0.00591451	6.30063e-5	0.0427941	0.00124286
chr19	44871852	44871951	17349311	0	+	0.636364	(0.59,1]	chr19	1439137	1	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	2.92097	4.66048	6.39999	0.0102634	1.31939e-6	0.0628742	5.06228e-5
chr2	239916088	239916188	3244909	0	-	0.41	(0.39,0.42]	chr2	285963	27	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.93975	4.660035000000001	5.38032	0.0105893	9.82886e-6	0.0644466	2.98194e-4
chr15	77484042	77484139	15037360	0	+	0.340206	(0.33,0.36]	chr15	1182624	12	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.33896	4.660005	4.98105	0.00182033	1.32493e-4	0.0183913	0.00227943
chr4	169663114	169663214	5217610	0	+	0.34	(0.33,0.36]	chr4	420864	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCN3	ENSG00000109572.14	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.33896	4.660005	4.98105	0.00182033	1.32493e-4	0.0183913	0.00227943
chr1	33020161	33020261	924531	0	-	0.41	(0.39,0.42]	chr1	97533	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5:ENST00000469238.1:ENST00000466029.1:ENST00000673291.1:ENST00000487289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.3313	4.659775	4.98825	0.00209984	1.62756e-4	0.0204266	0.00266622
chr18	46086184	46086257	17103814	0	-	0.520548	(0.49,0.53]	chr18	1404354	2	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000587902.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	96	2	4.10142	4.65954	5.21766	8.9797e-7	5.37161e-9	3.64922e-5	4.92601e-7
chr21	18858076	18858176	18064951	0	+	0.48	(0.455,0.49]	chr21	1532462	4	EXON_PSEUDO	EXON_PSEUDO	PPIAP22	ENSG00000198618.5	ENST00000358455.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	276	2	4.51769	4.659115	4.80054	6.01774e-12	1.69598e-12	1.20628e-9	3.6101e-10
chr11	61313636	61313706	12404034	0	-	0.528571	(0.49,0.53]	chr11	960216	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.23759	4.6591000000000005	5.08061	0.00436474	1.00361e-4	0.0335517	0.00196575
chr16	2519367	2519383	15493403	0	+	0.5	(0.49,0.53]	chr16	1227530	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.23759	4.6591000000000005	5.08061	0.00436474	1.00361e-4	0.0335517	0.00196575
chr8	125003343	125003428	9595398	0	+	0.458824	(0.455,0.49]	chr8	727899	3	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	7	205	2	4.22843	4.659045000000001	5.08966	2.11999e-8	1e-12	1.61668e-6	2.25522e-10
chr17	63764739	63764793	16634862	0	-	0.333333	(0.33,0.36]	chr17	1367614	1	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	4.59189	4.658935	4.72598	3.063e-7	1.47859e-8	1.45748e-5	1.1842e-6
chr7	66955619	66955717	8307712	0	+	0.336735	(0.33,0.36]	chr7	633399	2	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.83586	4.65886	5.48186	1.7178e-4	7.22374e-6	0.00302124	2.11873e-4
chr15	34943079	34943157	14861475	0	+	0.487179	(0.455,0.49]	chr15	1167110	1	EXON_PSEUDO	EXON_PSEUDO	RP11-83J16.1	ENSG00000231409.3	ENST00000491307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	222	2	4.44181	4.65878	4.87575	2.78177e-9	1e-12	2.78407e-7	2.25522e-10
chr12	124911658	124911713	13601217	0	-	0.309091	(0.29,0.33]	chr12	1071771	2	UTR3	UTR3:EXON_MRNA	UBC	ENSG00000150991.15	ENST00000536769.1:ENST00000538617.5:ENST00000339647.6:ENST00000546120.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.09886	4.6586099999999995	5.21836	4.1989e-5	3.15783e-5	9.84661e-4	7.02218e-4
chr11	14458531	14458609	12281557	0	-	0.5	(0.49,0.53]	chr11	949572	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COPB1	ENSG00000129083.13	ENST00000525214.1:ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.95291	4.658580000000001	6.36425	0.00119735	2.32873e-8	0.0134293	1.60638e-6
chr1	32672641	32672699	130335	0	+	0.482759	(0.455,0.49]	chr1	16104	1	CDS	CDS:UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	4.15477	4.65846	5.16215	5.04348e-5	5.75142e-7	0.00113788	2.49635e-5
chr10	75219303	75219356	11126491	0	+	0.377358	(0.36,0.39]	chr10	846651	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	85	2	3.41175	4.65793	5.90411	4.3994e-7	1.84371e-7	1.98946e-5	1.06884e-5
chr7	100606486	100606558	8427999	0	+	0.666667	(0.59,1]	chr7	643264	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000486440.5:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.34487	4.65751	4.97015	0.0123678	0.00140057	0.0705839	0.0144327
chr1	230236659	230236725	749361	0	+	0.484848	(0.455,0.49]	chr1	76027	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	4.63978	4.657425	4.67507	6.94032e-4	5.16001e-7	0.00876781	2.27446e-5
chrX	68071383	68071479	19098342	0	-	0.541667	(0.53,0.59]	chrX	1624707	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	OPHN1:PGK1P1	ENSG00000079482.14:ENSG00000228328.2	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1:ENST00000426382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	2	90	2	4.09676	4.657355	5.21795	3.14727e-5	8.67811e-9	7.72298e-4	6.8555e-7
chr1	161671563	161671649	501544	0	+	0.593023	(0.59,1]	chr1	54360	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000674150.1:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.37323	4.657265000000001	4.9413	0.00990413	0.00191468	0.061536	0.0190905
chr9	34318598	34318694	10238884	0	+	0.697917	(0.59,1]	chr9	769897	3	EXON_PSEUDO	EXON_PSEUDO	SERPINH1P1	ENSG00000229207.1	ENST00000419794.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	33	2	4.37323	4.657265000000001	4.9413	0.00990413	0.00191468	0.061536	0.0190905
chr20	32195858	32195957	17941029	0	-	0.515152	(0.49,0.53]	chr20	1519244	35	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.96757	4.657235	5.3469	6.21316e-5	2.75121e-5	0.00134149	6.30607e-4
chr1	42830941	42831028	162119	0	+	0.517241	(0.49,0.53]	chr1	20383	3	CDS	CDS:EXON_MRNA:INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	3.83319	4.657185	5.48118	1.34601e-4	1.24248e-5	0.00249552	3.28918e-4
chr16	2239978	2240078	15825062	0	-	0.48	(0.455,0.49]	chr16	1262306	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.70322	4.656885	5.61055	3.16146e-6	1.91639e-6	1.16228e-4	6.93031e-5
chr16	15036470	15036568	15562400	0	+	0.367347	(0.36,0.39]	chr16	1232374	3	UTR3	UTR3:EXON_MRNA:INTRON	PDXDC1	ENSG00000179889.19	ENST00000563679.5:ENST00000535621.6:ENST00000396410.9:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	3.83695	4.65672	5.47649	6.15027e-6	4.3709e-6	1.8415e-4	1.52262e-4
chr17	68037407	68037495	16333751	0	+	0.477273	(0.455,0.49]	chr17	1325111	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	84	2	2.37552	4.656610000000001	6.9377	0.00134626	1.12217e-10	0.0145759	1.5006e-8
chr6	39190889	39190989	7690369	0	-	0.53	(0.49,0.53]	chr6	589668	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.63338	4.656549999999999	4.67972	9.56909e-4	6.94757e-4	0.010724	0.00876781
chrX	56565549	56565648	18709763	0	+	0.515152	(0.49,0.53]	chrX	1596564	17	CDS	CDS:EXON_MRNA	UBQLN2	ENSG00000188021.9	ENST00000338222.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.63338	4.656549999999999	4.67972	9.56909e-4	6.94757e-4	0.010724	0.00876781
chr7	29066022	29066121	8744952	0	-	0.373737	(0.36,0.39]	chr7	667261	1	CDS	CDS:EXON_MRNA:INTRON	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6:ENST00000448959.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.21361	4.656505	5.0994	4.68763e-5	1.31698e-5	0.00107286	3.45454e-4
chr9	125241126	125241211	10856278	0	-	0.647059	(0.59,1]	chr9	822397	1	UTR5	UTR5:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	213	2	4.25887	4.65639	5.05391	3.07875e-7	1.53127e-7	1.64383e-5	8.07984e-6
chr1	179342113	179342192	576393	0	+	0.417722	(0.39,0.42]	chr1	59809	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.14886	4.656165	5.16347	0.00415881	6.48089e-5	0.0325842	0.00126536
chr14	96223347	96223446	14473843	0	+	0.393939	(0.39,0.42]	chr14	1130585	1	INTRON	INTRON	BDKRB2:RP11-404P21.8	ENSG00000168398.7:ENSG00000258691.1	ENST00000542454.2:ENST00000554311.2:ENST00000539359.1:ENST00000553811.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.14886	4.656165	5.16347	0.00415881	6.48089e-5	0.0325842	0.00126536
chr8	63027180	63027265	9852035	0	-	0.4	(0.39,0.42]	chr8	745342	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GGH	ENSG00000137563.13	ENST00000677482.1:ENST00000677459.1:ENST00000678069.1:ENST00000523788.2:ENST00000518466.6:ENST00000260118.7:ENST00000677327.1:ENST00000679326.1:ENST00000520609.5:ENST00000678045.1:ENST00000518113.2:ENST00000518966.5:ENST00000523479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.14886	4.656165	5.16347	0.00415881	6.48089e-5	0.0325842	0.00126536
chr2	43223838	43223934	2618842	0	-	0.447917	(0.42,0.455]	chr2	235738	16	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	6	158	2	4.4858	4.655895	4.82599	1.27707e-9	2.82174e-10	1.41135e-7	3.41824e-8
chr12	56597349	56597447	13351655	0	-	0.479592	(0.455,0.49]	chr12	1051592	19	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	3.99499	4.65585	5.31671	1.91791e-6	2.30862e-9	7.6073e-5	2.18512e-7
chr5	74990547	74990637	6642537	0	-	0.577778	(0.53,0.59]	chr5	513196	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	CTD-2503O16.4:RPL27AP5	ENSG00000249856.1:ENSG00000182383.8	ENST00000505200.1:ENST00000469428.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	68	2	4.16383	4.655425	5.14702	0.00659193	1.58171e-8	0.0454205	1.14917e-6
chr7	10938089	10938147	8678257	0	-	0.465517	(0.455,0.49]	chr7	663715	1	CDS	CDS:EXON_MRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000482299.1:ENST00000470761.5:ENST00000486007.1:ENST00000463308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	67	2	2.69169	4.6552	6.61871	0.00126948	2.11003e-9	0.0139061	2.02462e-7
chr4	102267605	102267674	5560689	0	-	0.463768	(0.455,0.49]	chr4	444066	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.3605	4.65496	5.94942	0.00147278	4.68666e-7	0.0157578	2.08717e-5
chr8	23200504	23200600	9756722	0	-	0.458333	(0.455,0.49]	chr8	737636	1	CDS	CDS:EXON_MRNA	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1:ENST00000524158.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.3605	4.65496	5.94942	0.00147278	4.68666e-7	0.0157578	2.08717e-5
chr17	82396262	82396356	16712766	0	-	0.361702	(0.36,0.39]	chr17	1378620	14	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.32237	4.6549	4.98743	0.00273222	8.82225e-5	0.0237575	0.00178337
chr2	101803171	101803271	1958637	0	+	0.37	(0.36,0.39]	chr2	186019	54	INTRON	INTRON	MAP4K4	ENSG00000071054.16	ENST00000427603.5:ENST00000350878.8:ENST00000350198.8:ENST00000324219.8:ENST00000425019.5:ENST00000302217.9:ENST00000625522.2:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000627726.2:ENST00000417294.5:ENST00000496989.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.32237	4.6549	4.98743	0.00273222	8.82225e-5	0.0237575	0.00178337
chr3	31636549	31636646	3392502	0	+	0.28866000000000003	[0,0.29]	chr3	295101	6	UTR3	UTR3:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.36843	4.65472	5.94101	3.09234e-4	2.02967e-7	0.00477565	1.02969e-5
chr1	156136978	156137028	486147	0	+	0.6	(0.59,1]	chr1	51293	1	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	182	2	4.63181	4.65368	4.67555	4.23414e-6	7.10301e-8	1.4819e-4	4.1684e-6
chr16	176679	176716	15480740	0	+	0.567568	(0.53,0.59]	chr16	1224201	1	UTR5	UTR5:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	434	2	4.25185	4.65366	5.05547	1.22834e-11	1e-12	2.08437e-9	2.46312e-10
chr1	235342031	235342131	765777	0	+	0.45	(0.42,0.455]	chr1	77255	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GGPS1:TBCE	ENSG00000152904.11:ENSG00000285053.1	ENST00000488594.5:ENST00000471812.5:ENST00000358966.6:ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000282841.9:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000391855.2:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000497327.1:ENST00000645578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.39468	4.653405	4.91213	0.00240483	1.75074e-4	0.0217482	0.00306313
chr17	28325502	28325555	16175247	0	+	0.433962	(0.42,0.455]	chr17	1304971	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.39468	4.653405	4.91213	0.00240483	1.75074e-4	0.0217482	0.00306313
chr19	799412	799443	17189449	0	+	0.451613	(0.42,0.455]	chr19	1411011	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.39468	4.653405	4.91213	0.00240483	1.75074e-4	0.0217482	0.00306313
chr1	42176736	42176835	964175	0	-	0.383838	(0.36,0.39]	chr1	101503	3	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.58747	4.653365	4.71926	6.55819e-4	5.29682e-4	0.00860229	0.006804
chr3	69833297	69833396	3546784	0	+	0.383838	(0.36,0.39]	chr3	308550	539	INTRON	INTRON	MITF	ENSG00000187098.17	ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.58747	4.653365	4.71926	6.55819e-4	5.29682e-4	0.00860229	0.006804
chr3	69833496	69833596	3546786	0	+	0.38	(0.36,0.39]	chr3	308550	541	INTRON	INTRON	MITF	ENSG00000187098.17	ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.58747	4.653365	4.71926	6.55819e-4	5.29682e-4	0.00860229	0.006804
chr2	43269135	43269235	2619256	0	-	0.58	(0.53,0.59]	chr2	235757	359	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000467668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	3.61856	4.653335	5.68811	0.0303021	5.40688e-6	0.129773	1.64762e-4
chr21	45468422	45468513	18145462	0	+	0.67033	(0.59,1]	chr21	1539676	3	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	4.16976	4.653275000000001	5.13679	9.28022e-4	4.80088e-5	0.0111748	9.91058e-4
chr1	25390748	25390831	904078	0	-	0.53012	(0.53,0.59]	chr1	94026	1	CDS	CDS:EXON_MRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.8006	4.653245	6.50589	0.00233666	1.53327e-8	0.0221314	1.12074e-6
chr16	67870813	67870913	15712236	0	+	0.48	(0.455,0.49]	chr16	1250700	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NUTF2	ENSG00000102898.12	ENST00000219169.9:ENST00000567105.5:ENST00000569436.6:ENST00000568396.2:ENST00000587481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.99697	4.65324	6.30951	9.57891e-4	1.52819e-8	0.0107247	1.21924e-6
chr1	196713825	196713917	641221	0	+	0.423913	(0.42,0.455]	chr1	64472	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.54792	4.6526	4.75728	9.66045e-4	5.3817e-4	0.0115185	0.00686676
chr9	14921409	14921508	10581559	0	-	0.434343	(0.42,0.455]	chr9	800961	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	23	2	4.54792	4.6526	4.75728	9.66045e-4	5.3817e-4	0.0115185	0.00686676
chrX	87704011	87704107	19141904	0	-	0.4375	(0.42,0.455]	chrX	1627927	8	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.54792	4.6526	4.75728	9.66045e-4	5.3817e-4	0.0115185	0.00686676
chr17	78185054	78185109	16693381	0	-	0.509091	(0.49,0.53]	chr17	1375323	1	CDS	CDS:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	4.03034	4.6525549999999996	5.27477	4.26396e-5	4.14521e-5	9.97006e-4	8.8376e-4
chr20	32141765	32141830	17752381	0	+	0.6	(0.59,1]	chr20	1498470	1	CDS	CDS:UTR3:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.28861	4.6524149999999995	6.01622	0.0028753	1.18141e-5	0.0256141	3.14877e-4
chr9	34588954	34589054	10637320	0	-	0.53	(0.49,0.53]	chr9	804262	74	INTRON	INTRON	CNTFR	ENSG00000122756.15	ENST00000351266.8:ENST00000378980.8:ENST00000610543.4:ENST00000417345.2	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.60116	4.6522950000000005	6.70343	0.0056515	1.29474e-9	0.0422191	1.3204e-7
chr12	118019631	118019693	13108692	0	+	0.5	(0.49,0.53]	chr12	1023038	1	CDS	CDS:UTR5:EXON_MRNA	RFC5	ENSG00000111445.14	ENST00000449641.6:ENST00000537315.5:ENST00000454402.7:ENST00000420967.5:ENST00000484086.6:ENST00000392542.6:ENST00000535092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.51312	4.65199	4.79086	0.00156636	4.20783e-4	0.0156889	0.00611538
chr17	28756078	28756178	16487290	0	-	0.53	(0.49,0.53]	chr17	1348267	2	UTR3	UTR3:EXON_MRNA	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000452648.8:ENST00000582059.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.55929	4.651835	4.74438	0.00116196	5.91752e-4	0.0130851	0.00743488
chr4	1812950	1813048	5280232	0	-	0.5	(0.49,0.53]	chr4	425052	16	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.55929	4.651835	4.74438	0.00116196	5.91752e-4	0.0130851	0.00743488
chr9	125263844	125263926	10856281	0	-	0.5	(0.49,0.53]	chr9	822398	1	EXON_PSEUDO	EXON_PSEUDO	RP11-65N13.6	ENSG00000214593.3	ENST00000453641.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.55929	4.651835	4.74438	0.00116196	5.91752e-4	0.0130851	0.00743488
chr17	68040677	68040766	16333785	0	+	0.438202	(0.42,0.455]	chr17	1325117	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	65	2	2.76161	4.65161	6.54161	9.19052e-4	4.74233e-9	0.0111046	4.06115e-7
chr4	151099623	151099652	5165542	0	+	0.62069	(0.59,1]	chr4	417299	1	UTR5	UTR5:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	291	2	3.92124	4.65135	5.38146	1.91125e-6	3.60458e-10	7.59962e-5	4.25144e-8
chr7	130175511	130175609	9063239	0	-	0.5	(0.49,0.53]	chr7	692155	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000479804.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	97	2	4.01076	4.651225	5.29169	1.7263e-6	3.21894e-9	6.99335e-5	2.90715e-7
chr11	9283423	9283523	12265132	0	-	0.35	(0.33,0.36]	chr11	948392	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	93	2	4.51028	4.65111	4.79194	3.22622e-8	1.86283e-9	2.33496e-6	1.81793e-7
chr16	85398937	85399037	15795307	0	+	0.47	(0.455,0.49]	chr16	1256986	396	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.54174	4.65111	4.76048	0.00130137	3.99985e-4	0.0136936	0.00588767
chr9	34087858	34087956	10634759	0	-	0.489796	(0.455,0.49]	chr9	803967	16	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	3.20534	4.65103	6.09672	1.74734e-5	8.84067e-8	4.38078e-4	5.61099e-6
chrX	141906705	141906805	18883533	0	+	0.47	(0.455,0.49]	chrX	1608997	14	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.63978	4.65094	4.6621	7.84472e-4	6.94032e-4	0.00927662	0.00876781
chr1	148939738	148939817	1283866	0	-	0.367089	(0.36,0.39]	chr1	127485	1	EXON_SMALL	EXON_SMALL	RNU2-38P	ENSG00000222788.1	ENST00000410856.1	snRNA	snRNA	snRNA	snRNA	2	59	2	4.37423	4.650845	4.92746	4.42053e-6	5.53333e-8	1.39924e-4	3.70319e-6
chr6	7282436	7282535	7586816	0	-	0.545455	(0.53,0.59]	chr6	578692	14	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.43863	4.650475	4.86232	0.00254763	4.57805e-4	0.0233955	0.00608573
chr7	128838266	128838347	8522320	0	+	0.580247	(0.53,0.59]	chr7	650328	1	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.43863	4.650475	4.86232	0.00254763	4.57805e-4	0.0233955	0.00608573
chr9	136474341	136474439	10890908	0	-	0.581633	(0.53,0.59]	chr9	827596	4	CDS	CDS:EXON_MRNA	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11:ENST00000371706.7:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.43863	4.650475	4.86232	0.00254763	4.57805e-4	0.0233955	0.00608573
chr1	21844147	21844223	890850	0	-	0.723684	(0.59,1]	chr1	92332	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.6986	4.650125	5.60165	4.89626e-4	1.30928e-4	0.00639399	0.00243846
chr11	62626627	62626684	12409709	0	-	0.631579	(0.59,1]	chr11	961237	2	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5:ENST00000531563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	211	2	4.19932	4.650095	5.10087	2.3242e-7	2.266e-7	1.26994e-5	1.15066e-5
chr8	6747669	6747748	9180672	0	+	0.367089	(0.36,0.39]	chr8	701055	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000533648.1:ENST00000533159.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	4.09565	4.6494800000000005	5.20331	2.81403e-5	2.53222e-5	6.51851e-4	6.42183e-4
chr16	86232	86327	15815304	0	-	0.547368	(0.53,0.59]	chr16	1259914	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000610509.1:ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	3.2425	4.649295	6.05609	2.6381e-4	4.62627e-7	0.00427022	2.06661e-5
chr8	41510081	41510181	9303508	0	+	0.28	[0,0.29]	chr8	712044	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA7	ENSG00000147533.17	ENST00000520817.5:ENST00000405786.2:ENST00000357743.9:ENST00000521417.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.47088	4.649185	5.82749	0.0015572	4.85228e-7	0.0165415	2.15406e-5
chr1	21864996	21865073	891099	0	-	0.688312	(0.59,1]	chr1	92454	3	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.89783	4.64891	6.39999	0.00198798	1.31939e-6	0.0195488	5.06228e-5
chr2	75660426	75660525	1894613	0	+	0.343434	(0.33,0.36]	chr2	179770	53	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL19:RP11-342K6.1	ENSG00000115364.14:ENSG00000270696.1	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1:ENST00000604845.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	22	2	4.1284	4.64819	5.16798	0.00407303	4.80331e-5	0.0324137	9.91058e-4
chr10	95611255	95611348	11632916	0	-	0.505376	(0.49,0.53]	chr10	885996	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000485428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	4.50546	4.648160000000001	4.79086	4.20783e-4	1.89933e-6	0.00611538	6.87959e-5
chr3	152268900	152268996	3816541	0	+	0.510417	(0.49,0.53]	chr3	325614	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	4.50546	4.648160000000001	4.79086	4.20783e-4	1.89933e-6	0.00611538	6.87959e-5
chr11	126265100	126265172	12645159	0	-	0.486111	(0.455,0.49]	chr11	981836	3	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000531104.1:ENST00000527817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.8203	4.648145	5.47599	7.64978e-6	6.9787e-6	2.4151e-4	2.0562e-4
chr5	154821259	154821342	6929625	0	-	0.542169	(0.53,0.59]	chr5	530572	1	CDS	CDS:UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000524250.5:ENST00000517938.5:ENST00000520581.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	4.32972	4.64814	4.96656	7.20871e-6	6.94912e-8	2.30406e-4	4.08427e-6
chr5	95768998	95769092	6108238	0	+	0.457447	(0.455,0.49]	chr5	478247	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RHOBTB3:HSPD1P11	ENSG00000164292.13:ENSG00000251348.1	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1:ENST00000508643.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	72	2	4.28007	4.648115000000001	5.01616	8.3464e-6	3.28358e-8	2.58924e-4	2.15416e-6
chr5	126820984	126821059	6202690	0	+	0.493333	(0.49,0.53]	chr5	483209	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	3.60476	4.648115	5.69147	4.52633e-4	7.40634e-11	0.00642319	1.04402e-8
chr6	30723626	30723722	7112214	0	+	0.479167	(0.455,0.49]	chr6	545065	4	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	563	2	4.53336	4.6471	4.76084	1e-12	1e-12	2.46312e-10	2.25522e-10
chr22	30976938	30977036	18344856	0	+	0.295918	(0.29,0.33]	chr22	1559168	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.62683	4.64701	5.66719	6.18968e-4	1.7577e-6	0.00822794	6.42329e-5
chr5	77582375	77582468	6050205	0	+	0.451613	(0.42,0.455]	chr5	474660	1	EXON_PSEUDO	EXON_PSEUDO	RPL7P23	ENSG00000244363.3	ENST00000493874.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	68	2	2.60504	4.647	6.68896	0.00201537	1.30378e-9	0.0197874	1.32846e-7
chr19	17405290	17405382	17495814	0	-	0.608696	(0.59,1]	chr19	1467263	1	CDS	CDS:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	2.66274	4.6467	6.63066	0.00482151	5.25661e-7	0.0365653	2.57927e-5
chr12	51240342	51240401	12876200	0	+	0.525424	(0.49,0.53]	chr12	1000602	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000552173.5:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549041.1:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	3.23781	4.646575	6.05534	5.17993e-5	2.57847e-7	0.00115752	1.25763e-5
chr3	196049381	196049479	4663134	0	-	0.316327	(0.29,0.33]	chr3	385550	2	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.76009	4.646305	5.53252	3.08518e-4	4.41551e-6	0.00476847	1.39924e-4
chr21	14374189	14374284	18163696	0	-	0.389474	(0.36,0.39]	chr21	1542399	6	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.33241	4.64611	5.95981	0.00193631	3.15714e-7	0.0192272	1.49311e-5
chr3	195786135	195786235	4661128	0	-	0.57	(0.53,0.59]	chr3	385270	75	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	4.51944	4.64583	4.77222	6.67251e-4	2.00484e-6	0.00867533	7.16652e-5
chr21	14374000	14374094	18163694	0	-	0.521277	(0.49,0.53]	chr21	1542399	4	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.99849	4.645745	6.293	0.00630123	4.1349e-8	0.0445415	2.61265e-6
chr11	4123182	4123249	11774316	0	+	0.432836	(0.42,0.455]	chr11	901015	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5:ENST00000526304.5:ENST00000528470.5:ENST00000531591.5:ENST00000529109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	3.31161	4.645665	5.97972	0.00186138	4.13864e-7	0.018635	1.88179e-5
chr9	124356763	124356839	10849543	0	-	0.526316	(0.49,0.53]	chr9	821873	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	3.23548	4.64541	6.05534	2.76544e-4	2.57847e-7	0.00444204	1.25763e-5
chr1	11285740	11285837	42470	0	+	0.618557	(0.59,1]	chr1	5109	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.63106	4.64537	4.65968	0.00537945	0.00413632	0.0406564	0.0324998
chr1	153986287	153986339	1300620	0	-	0.692308	(0.59,1]	chr1	130834	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RAB13	ENSG00000143545.10	ENST00000368575.5:ENST00000495720.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.63106	4.64537	4.65968	0.00537945	0.00413632	0.0406564	0.0324998
chr19	1241950	1241991	17192015	0	+	0.634146	(0.59,1]	chr19	1411824	1	CDS	CDS:EXON_MRNA	ATP5F1D	ENSG00000099624.8	ENST00000395633.5:ENST00000215375.7:ENST00000592624.1:ENST00000590265.5:ENST00000588538.5:ENST00000591660.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.63106	4.64537	4.65968	0.00537945	0.00413632	0.0406564	0.0324998
chr19	10321530	10321618	17459351	0	-	0.738636	(0.59,1]	chr19	1460744	1	CDS	CDS:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000593136.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.63106	4.64537	4.65968	0.00537945	0.00413632	0.0406564	0.0324998
chr15	64162036	64162095	15339336	0	-	0.423729	(0.42,0.455]	chr15	1210880	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680343.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2:ENST00000558492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	181	2	2.5451	4.645345	6.74559	0.00112955	1e-12	0.0128875	2.25522e-10
chr2	189923726	189923824	2274549	0	+	0.510204	(0.49,0.53]	chr2	206588	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	1	43	2	3.51981	4.645225	5.77064	6.88328e-4	1.94063e-6	0.00876781	6.9799e-5
chr22	18089170	18089269	18291440	0	+	0.434343	(0.42,0.455]	chr22	1552203	12	UTR3	UTR3:EXON_MRNA:INTRON	PEX26:AC008079.12	ENSG00000215193.14:ENSG00000288683.1	ENST00000329627.11:ENST00000474897.6:ENST00000399744.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	3.31073	4.645225	5.97972	1.94134e-4	4.13864e-7	0.00332542	1.88179e-5
chr9	35062022	35062088	10638122	0	-	0.5	(0.49,0.53]	chr9	804523	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.51981	4.645225	5.77064	6.88328e-4	1.94063e-6	0.00876781	6.9799e-5
chr2	239988891	239988984	3245653	0	-	0.494624	(0.49,0.53]	chr2	286026	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	4.09049	4.64466	5.19883	6.30063e-5	2.9452e-5	0.00124286	7.32348e-4
chr17	82396168	82396262	16712765	0	-	0.351064	(0.33,0.36]	chr17	1378620	13	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.52266	4.644455000000001	4.76625	8.34989e-4	3.84608e-4	0.0102956	0.00531017
chr2	55604775	55604875	2670479	0	-	0.34	(0.33,0.36]	chr2	239036	3	INTRON	INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.52266	4.644455000000001	4.76625	8.34989e-4	3.84608e-4	0.0102956	0.00531017
chr13	51460472	51460565	13743254	0	+	0.516129	(0.49,0.53]	chr13	1082548	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	INTS6-AS1:RPS4XP16	ENSG00000236778.8:ENSG00000224892.6	ENST00000657609.1:ENST00000665862.1:ENST00000593672.5:ENST00000595435.5:ENST00000596050.5:ENST00000594959.5:ENST00000595424.5:ENST00000593709.5:ENST00000434512.1:ENST00000601318.1:ENST00000599315.5:ENST00000602089.5:ENST00000597745.5:ENST00000596303.5:ENST00000596180.5:ENST00000593429.5:ENST00000600477.5:ENST00000598864.5:ENST00000594488.5:ENST00000594604.5:ENST00000594358.5:ENST00000601572.5:ENST00000593928.5:ENST00000595997.5:ENST00000595905.1:ENST00000596904.5:ENST00000601034.2:ENST00000610618.1:ENST00000626895.2:ENST00000629988.2:ENST00000427198.2	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	0	27	2	3.94177	4.644335	5.3469	0.0104929	2.75121e-5	0.063428	6.30607e-4
chr9	5830726	5830801	10543015	0	-	0.493333	(0.49,0.53]	chr9	799441	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5:ENST00000475005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.94177	4.644335	5.3469	0.0104929	2.75121e-5	0.063428	6.30607e-4
chr5	111498995	111499094	6761000	0	-	0.343434	(0.33,0.36]	chr5	519141	31	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	13	248	2	4.40318	4.644125	4.88507	1.73506e-12	1.07614e-12	4.00449e-10	2.40283e-10
chr1	161209482	161209538	499140	0	+	0.446429	(0.42,0.455]	chr1	54018	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000473321.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.24133	4.6440649999999994	5.0468	0.00326918	1.33918e-4	0.0282494	0.00229039
chr17	35009775	35009874	16516324	0	-	0.434343	(0.42,0.455]	chr17	1350604	39	UTR3	UTR3:EXON_MRNA	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.24133	4.6440649999999994	5.0468	0.00326918	1.33918e-4	0.0282494	0.00229039
chr2	84777933	84778030	2769139	0	-	0.43299	(0.42,0.455]	chr2	245559	8	EXON_PSEUDO	EXON_PSEUDO	LDHAP7	ENSG00000235847.2	ENST00000398295.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.24133	4.6440649999999994	5.0468	0.00326918	1.33918e-4	0.0282494	0.00229039
chr3	127621673	127621773	3723615	0	+	0.45	(0.42,0.455]	chr3	318304	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000468414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.24133	4.6440649999999994	5.0468	0.00326918	1.33918e-4	0.0282494	0.00229039
chr5	134715092	134715161	6230749	0	+	0.434783	(0.42,0.455]	chr5	485259	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.24133	4.6440649999999994	5.0468	0.00326918	1.33918e-4	0.0282494	0.00229039
chr1	242303022	242303122	1582032	0	-	0.44	(0.42,0.455]	chr1	157753	141	INTRON	INTRON	PLD5	ENSG00000180287.17	ENST00000536534.7:ENST00000442594.6:ENST00000427495.5:ENST00000314833.10:ENST00000366545.5:ENST00000467561.5:ENST00000459864.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	4.60214	4.644035000000001	4.68593	7.96714e-7	4.87807e-7	3.65339e-5	2.16171e-5
chr1	211578077	211578164	1478571	0	-	0.735632	(0.59,1]	chr1	149196	2	CDS	CDS:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	3.84557	4.643965	5.44236	0.0410704	2.02004e-4	0.163285	0.00317801
chr16	31132428	31132511	15917003	0	-	0.626506	(0.59,1]	chr16	1275839	1	CDS	CDS:EXON_MRNA	PRSS8	ENSG00000052344.16	ENST00000317508.11:ENST00000568261.5:ENST00000567531.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	3.84557	4.643965	5.44236	0.0410704	2.02004e-4	0.163285	0.00317801
chr19	814433	814512	17416692	0	-	0.658228	(0.59,1]	chr19	1451868	1	CDS	CDS:EXON_MRNA	PLPPR3	ENSG00000129951.19	ENST00000520876.8:ENST00000359894.6:ENST00000517665.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	3.84557	4.643965	5.44236	0.0410704	2.02004e-4	0.163285	0.00317801
chr9	99222281	99222363	10383973	0	+	0.609756	(0.59,1]	chr9	782321	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5:ENST00000481573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	113	2	3.64241	4.64378	5.64515	1.07144e-4	9.04232e-6	0.00206452	2.53593e-4
chr12	43660904	43661002	12841204	0	+	0.489796	(0.455,0.49]	chr12	997552	12	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P17	ENSG00000257907.2	ENST00000547505.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	62	2	2.63872	4.64344	6.64816	0.00510378	1.62448e-9	0.0390492	1.61468e-7
chr1	20655727	20655779	882288	0	-	0.576923	(0.53,0.59]	chr1	91142	2	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1	protein_coding	protein_coding	protein_coding	protein_coding	5	211	2	3.36311	4.643269999999999	5.92343	2.33543e-5	1e-12	6.09608e-4	2.25522e-10
chr22	21621514	21621569	18303176	0	+	0.581818	(0.53,0.59]	chr22	1554193	1	CDS	CDS:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	189	2	4.33821	4.64311	4.94801	1.78604e-9	8.07235e-10	1.7523e-7	9.50448e-8
chr6	147228053	147228153	7466668	0	+	0.37	(0.36,0.39]	chr6	571137	216	INTRON	INTRON	STXBP5	ENSG00000164506.14	ENST00000367481.7:ENST00000546097.5:ENST00000321680.10:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.92423	4.64307	5.36191	1.79406e-5	4.00467e-6	4.45904e-4	1.41152e-4
chr2	42351218	42351318	2616604	0	-	0.54	(0.53,0.59]	chr2	235509	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	COX7A2L	ENSG00000115944.15	ENST00000468711.5:ENST00000378669.5:ENST00000234301.3:ENST00000482463.5:ENST00000464443.5:ENST00000607768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	102	2	3.14453	4.642825	6.14112	4.56378e-6	2.39342e-7	1.43482e-4	1.32863e-5
chr17	63533970	63534055	16316984	0	+	0.611765	(0.59,1]	chr17	1323575	2	CDS	CDS:UTR3:EXON_MRNA	KCNH6	ENSG00000173826.15	ENST00000581784.5:ENST00000456941.6:ENST00000580652.5:ENST00000314672.10:ENST00000583465.1:ENST00000583023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.54183	4.642805	4.74378	0.0070583	0.00312942	0.0478044	0.0264364
chr12	102118362	102118418	13508582	0	-	0.410714	(0.39,0.42]	chr12	1061987	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000251074.5:ENST00000551744.2:ENST00000551200.5:ENST00000543021.5:ENST00000548994.1:ENST00000550459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.28128	4.642595	5.00391	0.00342611	9.12714e-5	0.0283456	0.00182992
chr19	14120173	14120268	17478634	0	-	0.4	(0.39,0.42]	chr19	1464243	8	UTR3	UTR3:EXON_MRNA	ASF1B	ENSG00000105011.9	ENST00000263382.8:ENST00000592798.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.28128	4.642595	5.00391	0.00342611	9.12714e-5	0.0283456	0.00182992
chr8	125438016	125438113	9598505	0	+	0.329897	(0.29,0.33]	chr8	728066	17	UTR3	UTR3:EXON_MRNA	TRIB1	ENSG00000173334.4	ENST00000311922.4	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.86293	4.642505	5.42208	5.31413e-6	5.2702e-6	1.7831e-4	1.61486e-4
chr2	231161339	231161424	2424099	0	+	0.482353	(0.455,0.49]	chr2	218381	1	CDS	CDS:UTR3:EXON_MRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000678261.1:ENST00000678141.1:ENST00000467792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.65079	4.642055	5.63332	3.61776e-4	4.15159e-6	0.00544764	1.32627e-4
chr20	1467016	1467114	17875682	0	-	0.693878	(0.59,1]	chr20	1512421	2	INTRON	INTRON	NSFL1C	ENSG00000088833.18	ENST00000553571.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	68	2	3.23348	4.641565	6.04965	0.00352837	9.85057e-6	0.0298518	2.72926e-4
chr12	57514719	57514785	12903019	0	+	0.515152	(0.49,0.53]	chr12	1005412	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000548944.1:ENST00000549048.1:ENST00000548202.5:ENST00000552914.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.88887	4.64143	5.39399	9.98984e-5	1.71804e-5	0.00180257	4.72485e-4
chr4	6716763	6716863	4704435	0	+	0.6	(0.59,1]	chr4	390559	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BLOC1S4	ENSG00000186222.5	ENST00000320776.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.11672	4.64124	5.16576	0.0222273	6.55716e-4	0.105595	0.0080931
chr19	41292252	41292338	17334179	0	+	0.476744	(0.455,0.49]	chr19	1436757	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000599719.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000600596.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.41041	4.641135	4.87186	0.00218771	2.33781e-4	0.0202707	0.00385436
chr7	73711316	73711397	8332505	0	+	0.567901	(0.53,0.59]	chr7	634603	1	EXON_SMALL	EXON_SMALL:PRIMIRNA	MIR4284	ENSG00000265724.1	ENST00000578924.1	miRNA	miRNA	miRNA	miRNA:primary_miRNA	1	49	2	3.30943	4.640975	5.97252	0.0018255	8.30115e-7	0.0183913	3.4056e-5
chr3	14447581	14447650	3320441	0	+	0.521739	(0.49,0.53]	chr3	292226	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.98834	4.64067	6.293	2.39968e-4	4.1349e-8	0.00394917	2.61265e-6
chr10	100152130	100152230	11660918	0	-	0.47	(0.455,0.49]	chr10	888406	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ERLIN1	ENSG00000107566.14	ENST00000421367.7:ENST00000407654.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.50805	4.640615	4.77318	0.00122223	4.7888e-4	0.0135383	0.00628636
chr11	134176306	134176386	12675137	0	-	0.4875	(0.455,0.49]	chr11	983355	1	CDS	CDS:UTR3:EXON_MRNA	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000534532.6:ENST00000525964.6:ENST00000530396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.50805	4.640615	4.77318	0.00122223	4.7888e-4	0.0135383	0.00628636
chr13	46159598	46159662	14009956	0	-	0.484375	(0.455,0.49]	chr13	1098580	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5:ENST00000442275.1:ENST00000460190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.50805	4.640615	4.77318	0.00122223	4.7888e-4	0.0135383	0.00628636
chr8	42532673	42532772	9811976	0	-	0.464646	(0.455,0.49]	chr8	742097	302	INTRON	INTRON	SLC20A2	ENSG00000168575.10	ENST00000342228.7:ENST00000520179.5:ENST00000524211.1:ENST00000518717.1:ENST00000518384.1:ENST00000524237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.50805	4.640615	4.77318	0.00122223	4.7888e-4	0.0135383	0.00628636
chrX	52833600	52833699	19074367	0	-	0.464646	(0.455,0.49]	chrX	1622134	10	EXON_PSEUDO	EXON_PSEUDO	EIF4A2P4	ENSG00000224781.1	ENST00000458691.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.50805	4.640615	4.77318	0.00122223	4.7888e-4	0.0135383	0.00628636
chr7	105112387	105112481	8449881	0	+	0.468085	(0.455,0.49]	chr7	645366	7	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	3.24013	4.6406	6.04107	5.30989e-5	2.38066e-7	0.00118379	1.17461e-5
chr4	3524906	3524969	5285775	0	-	0.507937	(0.49,0.53]	chr4	425835	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1:ENST00000650633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.94177	4.640575	5.33938	0.0104929	2.08896e-9	0.063428	2.01159e-7
chr2	173366357	173366432	2218744	0	+	0.586667	(0.53,0.59]	chr2	202922	2	CDS	CDS:EXON_MRNA:INTRON	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.16383	4.6404499999999995	5.11707	0.00659193	1.35965e-4	0.0454205	0.00231202
chr3	49131628	49131723	4172845	0	-	0.557895	(0.53,0.59]	chr3	350605	2	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000494831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16383	4.6404499999999995	5.11707	0.00659193	1.35965e-4	0.0454205	0.00231202
chr9	33442445	33442518	10632553	0	-	0.575342	(0.53,0.59]	chr9	803592	3	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2:ENST00000645858.1:ENST00000463983.5:ENST00000473153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.16383	4.6404499999999995	5.11707	0.00659193	1.35965e-4	0.0454205	0.00231202
chr9	136215153	136215228	10888884	0	-	0.533333	(0.53,0.59]	chr9	826980	1	CDS	CDS:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10:ENST00000455222.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.16383	4.6404499999999995	5.11707	0.00659193	1.35965e-4	0.0454205	0.00231202
chrX	3899215	3899284	18932779	0	-	0.536232	(0.53,0.59]	chrX	1613513	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	0	27	2	4.16383	4.6404499999999995	5.11707	0.00659193	1.35965e-4	0.0454205	0.00231202
chr14	101677942	101678029	14493175	0	+	0.425287	(0.42,0.455]	chr14	1132752	1	EXON_PSEUDO	EXON_PSEUDO	RP11-796G6.1	ENSG00000241494.1	ENST00000472981.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	3.8515	4.640095	5.42869	0.0119089	1.60756e-5	0.0686664	4.07445e-4
chr4	186328715	186328813	5838031	0	-	0.44898	(0.42,0.455]	chr4	458805	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	F11-AS1:SLC25A5P6	ENSG00000251165.6:ENSG00000213332.4	ENST00000505103.5:ENST00000515328.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	27	2	3.8515	4.640095	5.42869	0.0119089	1.60756e-5	0.0686664	4.07445e-4
chr1	19238077	19238139	877339	0	-	0.5	(0.49,0.53]	chr1	90495	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.1011	4.64008	6.17906	5.69237e-4	1.01082e-7	0.00778538	5.6272e-6
chr17	50382889	50382987	16585122	0	-	0.530612	(0.53,0.59]	chr17	1363112	18	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.29749	4.640000000000001	6.98251	0.00181945	2.62499e-10	0.0183913	3.19655e-8
chr12	42678956	42679040	13303072	0	-	0.404762	(0.39,0.42]	chr12	1042761	2	EXON_PSEUDO	EXON_PSEUDO	RPS27P21	ENSG00000240759.1	ENST00000486977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	53	2	2.70591	4.63994	6.57397	0.0185716	2.74698e-9	0.0932453	2.54234e-7
chr17	47673489	47673561	16251884	0	+	0.430556	(0.42,0.455]	chr17	1316724	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1:ENST00000580019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	2.83395	4.639675	6.4454	6.25227e-4	1.07351e-8	0.00830005	8.24229e-7
chr19	35158343	35158400	17303777	0	+	0.578947	(0.53,0.59]	chr19	1430603	1	CDS	CDS:UTR3:EXON_MRNA	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392218.6:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	190	2	4.11371	4.63942	5.1651300000000004	9.16965e-7	4.41525e-12	4.11625e-5	8.44981e-10
chr22	39020057	39020155	18368464	0	+	0.479592	(0.455,0.49]	chr22	1562849	18	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.37741	4.639365	5.90132	1.27402e-4	6.63378e-7	0.00241206	2.82038e-5
chr11	3827367	3827464	12238980	0	-	0.56701	(0.53,0.59]	chr11	945691	5	UTR3	UTR3:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1:ENST00000396978.1:ENST00000533217.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.87884	4.63892	5.399	1.11478e-4	3.02387e-5	0.00213212	6.78876e-4
chr11	61349643	61349737	12404370	0	-	0.542553	(0.53,0.59]	chr11	960310	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000536452.1:ENST00000546151.5:ENST00000540755.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.87884	4.63892	5.399	1.11478e-4	3.02387e-5	0.00213212	6.78876e-4
chr3	69104536	69104636	3545800	0	+	0.46	(0.455,0.49]	chr3	308507	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	ARL6IP5	ENSG00000144746.7	ENST00000273258.4:ENST00000478935.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	4.20189	4.63878	5.07567	0.00397662	1.97355e-8	0.0322851	1.39098e-6
chr1	149813440	149813510	1286918	0	-	0.6	(0.59,1]	chr1	127824	2	CDS	CDS:EXON_MRNA	H3C13	ENSG00000183598.4	ENST00000331491.2	protein_coding	protein_coding	protein_coding	protein_coding	5	160	2	3.5198	4.63872	5.75764	4.53637e-5	2.88727e-6	9.4617e-4	1.08116e-4
chr11	78114322	78114392	12477862	0	-	0.385714	(0.36,0.39]	chr11	970743	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.99	4.637925	5.28585	6.1616e-5	2.81625e-5	0.00133408	6.42183e-4
chr20	396979	397076	17644589	0	+	0.515464	(0.49,0.53]	chr20	1491383	4	UTR3	UTR3:EXON_MRNA	TRIB3	ENSG00000101255.12	ENST00000217233.9	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	4.30878	4.637765	4.96675	7.12421e-6	5.35448e-8	2.28404e-4	3.27447e-6
chr6	31860438	31860529	7662788	0	-	0.571429	(0.53,0.59]	chr6	585396	1	CDS	CDS:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	2.45052	4.63758	6.82464	0.00355092	1.06121e-9	0.0300049	1.10387e-7
chr2	74215219	74215317	1891751	0	+	0.306122	(0.29,0.33]	chr2	179209	11	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.24387	4.637555000000001	5.03124	0.00263476	9.06368e-5	0.0239118	0.00167558
chr2	195736322	195736420	2290937	0	+	0.326531	(0.29,0.33]	chr2	207636	14	UTR3	UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.24387	4.637555000000001	5.03124	0.00263476	9.06368e-5	0.0239118	0.00167558
chr11	32935335	32935435	11899080	0	+	0.36	(0.33,0.36]	chr11	909001	37	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5:ENST00000524678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.72365	4.63718	5.55071	3.19155e-4	4.61342e-6	0.00491578	0.00014480800000000001
chr6	36855516	36855615	7682945	0	-	0.414141	(0.39,0.42]	chr6	589169	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	3.40647	4.637075	5.86768	1.67145e-5	3.14934e-7	4.22716e-4	1.67595e-5
chrX	77902662	77902762	18744895	0	+	0.43	(0.42,0.455]	chrX	1599633	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	9	225	2	4.51864	4.63697	4.7553	1.06675e-10	1.01166e-11	1.58498e-8	1.75856e-9
chr1	30757745	30757774	915808	0	-	0.655172	(0.59,1]	chr1	95906	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000476492.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.2353	4.63682	5.03834	0.0165254	0.00108238	0.0873033	0.0118355
chr17	72648802	72648881	16669296	0	-	0.607595	(0.59,1]	chr17	1371722	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A11	ENSG00000133195.11	ENST00000255559.7:ENST00000542342.6:ENST00000579988.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.2353	4.63682	5.03834	0.0165254	0.00108238	0.0873033	0.0118355
chr6	30896701	30896783	7112979	0	+	0.646341	(0.59,1]	chr6	545204	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDR1	ENSG00000204580.14	ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000376568.8:ENST00000452441.5:ENST00000482873.6:ENST00000508312.5:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000417521.5:ENST00000465966.4:ENST00000513514.2:ENST00000514434.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.2353	4.63682	5.03834	0.0165254	0.00108238	0.0873033	0.0118355
chr11	5345835	5345899	12241554	0	-	0.421875	(0.42,0.455]	chr11	946170	2	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	96	2	3.7355	4.6368	5.5381	1.29688e-5	3.08093e-10	3.73168e-4	3.7001e-8
chr6	26285287	26285343	7647377	0	-	0.535714	(0.53,0.59]	chr6	582596	1	CDS	CDS:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1:ENST00000377727.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.38347	4.636645	5.88982	0.00132446	1.39814e-6	0.0138834	5.82056e-5
chr5	141516464	141516561	6875037	0	-	0.536082	(0.53,0.59]	chr5	526351	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	4.23022	4.6366	5.04298	1.91383e-4	1.38676e-5	0.0032874	3.5918e-4
chr11	88337672	88337726	12533520	0	-	0.574074	(0.53,0.59]	chr11	972585	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.86809	4.63653	5.40497	1.18973e-4	2.83308e-5	0.00207755	7.12614e-4
chr18	23556410	23556495	17037526	0	-	0.576471	(0.53,0.59]	chr18	1400609	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.86809	4.63653	5.40497	1.18973e-4	2.83308e-5	0.00207755	7.12614e-4
chr16	1668038	1668115	15488336	0	+	0.662338	(0.59,1]	chr16	1226117	2	CDS	CDS:UTR3:EXON_MRNA	CRAMP1:LA16c-431H6.6	ENSG00000007545.16:ENSG00000261732.1	ENST00000397412.8:ENST00000293925.9:ENST00000454337.1:ENST00000492778.5:ENST00000415022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.26354	4.636495	5.00945	0.0134233	0.00149725	0.0743429	0.0159607
chr22	38731002	38731101	18367578	0	+	0.545455	(0.53,0.59]	chr22	1562698	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	488	2	4.28277	4.63646	4.99015	4.88565e-12	1e-12	1.00244e-9	2.25522e-10
chr2	27326018	27326103	2569947	0	-	0.423529	(0.42,0.455]	chr2	231378	3	UTR3	UTR3:EXON_MRNA	GTF3C2	ENSG00000115207.13	ENST00000264720.7:ENST00000359541.6:ENST00000457098.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	4.22524	4.63602	5.0468	1.33918e-4	1.2079e-5	0.00229039	3.52389e-4
chr6	106971660	106971760	7876590	0	-	0.52	(0.49,0.53]	chr6	603140	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	CD24	ENSG00000272398.6	ENST00000619133.4:ENST00000606017.2:ENST00000615659.1:ENST00000620405.1:ENST00000619869.1:ENST00000622315.1:ENST00000610952.1	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	4.16626	4.63589	5.10552	5.42608e-7	1.45408e-8	2.37553e-5	1.17124e-6
chr17	82396450	82396544	16712768	0	-	0.319149	(0.29,0.33]	chr17	1378620	16	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.45534	4.635759999999999	4.81618	0.00110984	2.74489e-4	0.0127344	0.00406677
chr5	32125812	32125911	6517510	0	-	0.434343	(0.42,0.455]	chr5	504807	12	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.61085	4.635759999999999	6.66067	7.93561e-4	1.67683e-9	0.00988333	1.65962e-7
chr4	125872443	125872543	5100709	0	+	0.45	(0.42,0.455]	chr4	413489	1194	INTRON	INTRON	RP11-399F2.2	ENSG00000250149.2	ENST00000667497.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	4.05954	4.635705	5.21187	0.00617886	5.5797e-5	0.0439741	0.00112719
chr4	140540234	140540301	5131551	0	+	0.447761	(0.42,0.455]	chr4	415448	2	CDS	CDS:EXON_MRNA	ELMOD2	ENSG00000179387.10	ENST00000323570.8:ENST00000502397.5:ENST00000513606.1:ENST00000512057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.05954	4.635705	5.21187	0.00617886	5.5797e-5	0.0439741	0.00112719
chr22	50305754	50305854	18547314	0	-	0.67	(0.59,1]	chr22	1584782	44	INTRON	INTRON	PLXNB2	ENSG00000196576.16	ENST00000359337.9:ENST00000449103.5:ENST00000425954.1	protein_coding	protein_coding	protein_coding	protein_coding	5	157	2	1.74291	4.6355249999999995	7.52814	0.0212394	6.24547e-10	0.102152	6.87794e-8
chrX	135033089	135033181	18865056	0	+	0.608696	(0.59,1]	chrX	1607588	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	131	2	4.61797	4.635475	4.65298	3.73949e-6	3.73496e-6	1.32675e-4	1.21565e-4
chr17	16382203	16382301	16141809	0	+	0.55102	(0.53,0.59]	chr17	1300658	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBB	ENSG00000170315.14	ENST00000577640.1:ENST00000302182.8:ENST00000535788.1:ENST00000578649.1:ENST00000395839.5:ENST00000395837.1:ENST00000614404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	514	2	4.0616	4.635355000000001	5.20911	8.39996e-11	1e-12	1.27881e-8	2.25522e-10
chr1	113976977	113977076	418245	0	+	0.454545	(0.42,0.455]	chr1	41199	36	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.71365	4.6353349999999995	5.55702	2.63375e-4	7.30994e-6	0.00427022	2.13219e-4
chr5	10488980	10489061	5875958	0	+	0.432099	(0.42,0.455]	chr5	462104	3	EXON_PSEUDO	EXON_PSEUDO	RPL30P7	ENSG00000244361.1	ENST00000479312.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	59	2	4.15824	4.635210000000001	5.11218	6.01815e-5	5.69008e-7	0.00130886	2.47342e-5
chr20	45425573	45425649	17801720	0	+	0.592105	(0.59,1]	chr20	1505126	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PIGT:MIR6812	ENSG00000124155.18:ENSG00000273555.1	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000638714.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000640194.1:ENST00000545755.3:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000638927.1:ENST00000638277.1:ENST00000638241.1:ENST00000640253.1:ENST00000638691.1:ENST00000424705.2:ENST00000640123.1:ENST00000619733.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	0	32	2	4.44671	4.6349800000000005	4.82325	0.00931497	0.002381	0.0586162	0.0216895
chr3	50358587	50358681	4177897	0	-	0.595745	(0.59,1]	chr3	351837	5	CDS	CDS:EXON_MRNA	TMEM115	ENSG00000126062.4	ENST00000266025.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.44671	4.6349800000000005	4.82325	0.00931497	0.002381	0.0586162	0.0216895
chr3	127619110	127619194	3723585	0	+	0.630952	(0.59,1]	chr3	318289	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000468414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.44671	4.6349800000000005	4.82325	0.00931497	0.002381	0.0586162	0.0216895
chr7	101210387	101210444	8953670	0	-	0.561404	(0.53,0.59]	chr7	684672	2	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000487563.1:ENST00000460132.5:ENST00000440925.1:ENST00000466881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.69065	4.6349800000000005	5.57931	3.04331e-4	1.05602e-5	0.00472028	2.89015e-4
chr17	41769047	41769127	16543129	0	-	0.65	(0.59,1]	chr17	1356307	2	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000420370.5:ENST00000424457.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.47517	4.634835000000001	4.7945	0.00735659	0.0031766	0.0491503	0.0279054
chr19	58387215	58387307	17412690	0	+	0.641304	(0.59,1]	chr19	1451024	3	UTR5	UTR5:EXON_MRNA:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000599909.1:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	1310	2	4.02185	4.634425	5.247	1.88171e-9	1e-12	1.97805e-7	2.25522e-10
chr12	104031256	104031351	13057246	0	+	0.536842	(0.53,0.59]	chr12	1017437	6	EXON_PSEUDO	EXON_PSEUDO	RP11-490H24.5	ENSG00000216285.5	ENST00000547454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.00393	4.63442	5.26491	0.0108084	6.31437e-5	0.064368	0.00124286
chr22	41064051	41064148	18378064	0	+	0.556701	(0.53,0.59]	chr22	1564055	1	EXON_PSEUDO	EXON_PSEUDO	RP11-12M9.3	ENSG00000237214.3	ENST00000418783.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.00393	4.63442	5.26491	0.0108084	6.31437e-5	0.064368	0.00124286
chr4	7060961	7061043	5298621	0	-	0.536585	(0.53,0.59]	chr4	426858	1	CDS	CDS:EXON_MRNA	GRPEL1	ENSG00000109519.13	ENST00000264954.5:ENST00000504920.5:ENST00000509696.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.00393	4.63442	5.26491	0.0108084	6.31437e-5	0.064368	0.00124286
chr4	37909111	37909211	4793608	0	+	0.55	(0.53,0.59]	chr4	395341	62	INTRON	INTRON	TBC1D1	ENSG00000065882.16	ENST00000261439.9:ENST00000508802.5:ENST00000402522.1:ENST00000615497.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.00393	4.63442	5.26491	0.0108084	6.31437e-5	0.064368	0.00124286
chr8	74603607	74603698	9894971	0	-	0.549451	(0.53,0.59]	chr8	748013	5	EXON_PSEUDO	EXON_PSEUDO	PCBP2P2	ENSG00000253341.1	ENST00000517662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	28	2	4.00393	4.63442	5.26491	0.0108084	6.31437e-5	0.064368	0.00124286
chr19	12878480	12878579	17471765	0	-	0.555556	(0.53,0.59]	chr19	1463255	2	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1:ENST00000592506.1:ENST00000586547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	175	2	3.62271	4.6343950000000005	5.64608	2.78569e-5	1e-12	7.05707e-4	2.25522e-10
chr6	33417096	33417142	7669555	0	-	0.5	(0.49,0.53]	chr6	587673	1	CDS	CDS:UTR3:EXON_MRNA	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	4.37423	4.63414	4.89405	2.57983e-4	4.77238e-6	0.00419998	1.49327e-4
chr1	149860819	149860919	1287082	0	-	0.65	(0.59,1]	chr1	127847	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	328	2	3.86559	4.634075	5.40256	7.06471e-8	2.07535e-8	4.58839e-6	1.45188e-6
chr7	1439384	1439481	8645279	0	-	0.463918	(0.455,0.49]	chr7	660635	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000487156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	3.47671	4.63407	5.79143	0.0368644	8.96581e-7	0.145024	4.03386e-5
chr1	116401194	116401260	423926	0	+	0.560606	(0.53,0.59]	chr1	41841	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1:ENST00000479960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	288	2	3.37174	4.633805000000001	5.89587	5.64197e-6	1e-12	1.87384e-4	2.25522e-10
chr3	73018428	73018528	3556219	0	+	0.41	(0.39,0.42]	chr3	309011	24	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.80623	4.63354	5.46085	7.67155e-6	5.81708e-6	2.20857e-4	1.921e-4
chr17	7113321	7113419	16428394	0	-	0.438776	(0.42,0.455]	chr17	1339053	41	INTRON	INTRON	ASGR2	ENSG00000161944.16	ENST00000254850.11:ENST00000355035.9:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.25028	4.63295	5.01562	0.00406761	1.01971e-4	0.032143	0.0019861
chr9	125693818	125693918	10858879	0	-	0.44	(0.42,0.455]	chr9	822521	208	INTRON	INTRON	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000394060.7:ENST00000427078.5:ENST00000373496.3:ENST00000433483.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.25028	4.63295	5.01562	0.00406761	1.01971e-4	0.032143	0.0019861
chr11	65130977	65131036	12421672	0	-	0.559322	(0.53,0.59]	chr11	963750	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5:ENST00000532771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.7898	4.632825	6.47585	0.0128364	1.951e-8	0.0719798	1.37715e-6
chr5	21884214	21884310	5904907	0	+	0.489583	(0.455,0.49]	chr5	463295	18	EXON_PSEUDO	EXON_PSEUDO	HSPD1P1	ENSG00000213430.6	ENST00000503199.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	63	2	3.53124	4.63243	5.73362	6.91417e-6	1.35346e-6	2.03942e-4	5.67444e-5
chr16	74503607	74503707	16031534	0	-	0.45	(0.42,0.455]	chr16	1287376	1	CDS_START	CDS_START:CDS:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565474.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	4.40276	4.632425	4.86209	0.0017618	1.22097e-7	0.0180053	6.6496e-6
chr14	34435200	34435300	14577214	0	-	0.46	(0.455,0.49]	chr14	1141953	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	EGLN3:SPTSSA	ENSG00000129521.15:ENSG00000165389.7	ENST00000551935.5:ENST00000298130.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.20189	4.6323550000000004	5.06282	0.00397662	1.16789e-4	0.0322851	0.0020505
chr4	112116706	112116804	5600218	0	-	0.479592	(0.455,0.49]	chr4	446657	3	EXON_PSEUDO	EXON_PSEUDO	RP11-477G18.1	ENSG00000240459.2	ENST00000497190.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.20189	4.6323550000000004	5.06282	0.00397662	1.16789e-4	0.0322851	0.0020505
chr10	80155653	80155752	11593199	0	-	0.565657	(0.53,0.59]	chr10	883015	49	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000463340.1:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	3.51884	4.632210000000001	5.74558	8.13068e-6	3.61407e-6	2.32341e-4	1.29307e-4
chr13	114284306	114284402	13913057	0	+	0.458333	(0.455,0.49]	chr13	1090958	7	INTRON	INTRON	UPF3A	ENSG00000169062.15	ENST00000375299.8:ENST00000351487.5:ENST00000484246.5:ENST00000480362.5:ENST00000474056.5:ENST00000493727.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	90	2	4.50629	4.6321650000000005	4.75804	2.37841e-7	3.09017e-8	1.32405e-5	2.04921e-6
chr1	55059485	55059574	203804	0	+	0.662921	(0.59,1]	chr1	26166	1	CDS	CDS:EXON_MRNA:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	262	2	3.69421	4.632125	5.57004	7.04935e-7	9.14496e-9	2.96491e-5	7.85418e-7
chr15	74845531	74845593	15375887	0	-	0.483871	(0.455,0.49]	chr15	1215478	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.46389	4.63195	5.80001	9.14164e-4	1.35407e-6	0.0110519	5.16241e-5
chr11	61314117	61314189	12404041	0	-	0.541667	(0.53,0.59]	chr11	960220	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.47419	4.63173	5.78927	8.75273e-4	2.83401e-6	0.0106963	9.62519e-5
chr15	60354170	60354208	15316764	0	-	0.421053	(0.42,0.455]	chr15	1208936	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.40276	4.63157	4.86038	0.0017618	3.34791e-4	0.0180053	0.00472923
chr4	120060873	120060924	5621472	0	-	0.45098	(0.42,0.455]	chr4	448085	1	CDS	CDS:UTR3:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000512484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.40276	4.63157	4.86038	0.0017618	3.34791e-4	0.0180053	0.00472923
chr4	139698225	139698307	5671435	0	-	0.548781	(0.53,0.59]	chr4	450574	2	EXON_PSEUDO	EXON_PSEUDO	H3P16	ENSG00000178458.5	ENST00000230495.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	60	2	3.56863	4.63137	5.69411	3.93456e-5	5.01544e-6	8.48445e-4	1.7067e-4
chr17	59681294	59681386	16295452	0	+	0.434783	(0.42,0.455]	chr17	1321719	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	4.16236	4.631365	5.10037	1.83138e-5	1.23112e-10	4.99708e-4	1.63128e-8
chr9	118083125	118083210	10827665	0	-	0.447059	(0.42,0.455]	chr9	820068	4	EXON_PSEUDO	EXON_PSEUDO	TPT1P9	ENSG00000234782.3	ENST00000413759.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	53	2	2.7523	4.6312750000000005	6.51025	0.0153283	6.20371e-9	0.0828908	5.13192e-7
chr6	26031649	26031749	7646926	0	-	0.52	(0.49,0.53]	chr6	582487	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	23	605	2	4.06223	4.630699999999999	5.19917	8.38662e-12	1e-12	1.62801e-9	2.25522e-10
chr11	4106142	4106223	11774127	0	+	0.469136	(0.455,0.49]	chr11	900947	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RRM1	ENSG00000167325.15	ENST00000532710.5:ENST00000300738.10:ENST00000532170.5:ENST00000526865.5:ENST00000533349.5:ENST00000526350.5:ENST00000530368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	3.31171	4.630565	5.94942	1.87327e-4	4.68666e-7	0.00325006	2.08717e-5
chrX	55014835	55014925	19084613	0	-	0.644444	(0.59,1]	chrX	1623743	2	CDS	CDS:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.20732	4.63014	6.05296	1.12583e-4	1.41714e-5	0.00199971	4.01358e-4
chr1	25398815	25398911	104310	0	+	0.53125	(0.53,0.59]	chr1	12232	2	EXON_PSEUDO	EXON_PSEUDO	RP3-469D22.1	ENSG00000238084.4	ENST00000419297.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	4.30776	4.630045	4.95233	0.00407289	3.02711e-4	0.0324137	0.00439897
chr6	17615613	17615709	7618875	0	-	0.364583	(0.36,0.39]	chr6	580511	7	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.99086	4.62905	6.26724	3.25198e-4	2.79819e-8	0.00500369	1.8758e-6
chr1	109317910	109317969	1219515	0	-	0.457627	(0.455,0.49]	chr1	118956	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.81275	4.628785	5.44482	0.0138827	1.36044e-5	0.0760883	3.54469e-4
chr16	66565911	66566011	15705773	0	+	0.46	(0.455,0.49]	chr16	1249145	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CKLF:CKLF-CMTM1	ENSG00000217555.13:ENSG00000254788.7	ENST00000534692.1:ENST00000345436.8:ENST00000351137.8:ENST00000362093.4:ENST00000264001.9:ENST00000417030.2:ENST00000527845.1:ENST00000527729.5:ENST00000532838.1:ENST00000616804.5:ENST00000615332.5:ENST00000563092.1:ENST00000529718.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	3.81275	4.628785	5.44482	0.0138827	1.36044e-5	0.0760883	3.54469e-4
chr6	89422455	89422545	7837061	0	-	0.466667	(0.455,0.49]	chr6	600311	5	EXON_PSEUDO	EXON_PSEUDO	NACAP7	ENSG00000218965.1	ENST00000407371.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	3.81275	4.628785	5.44482	0.0138827	1.36044e-5	0.0760883	3.54469e-4
chr14	105978608	105978698	14802391	0	-	0.544444	(0.53,0.59]	chr14	1160691	2	EXON_PSEUDO	EXON_PSEUDO	AB019441.29	ENSG00000225200.2	ENST00000392301.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	60	2	3.2425	4.628705	6.01491	2.6381e-4	6.18274e-7	0.00427022	2.65059e-5
chr16	1325276	1325373	15486440	0	+	0.329897	(0.29,0.33]	chr16	1225668	6	UTR3	UTR3:EXON_MRNA	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000567383.6:ENST00000406620.6:ENST00000562470.3:ENST00000567074.6:ENST00000677314.1:ENST00000679137.1:ENST00000677987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	4.05177	4.628525	5.20528	3.72769e-5	2.18753e-5	8.08834e-4	5.75389e-4
chr17	67107168	67107254	16651004	0	-	0.430233	(0.42,0.455]	chr17	1369343	1	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.52659	4.628475	5.73036	6.87022e-4	2.37045e-6	0.00876781	8.28831e-5
chr2	60735532	60735623	2685802	0	-	0.43956	(0.42,0.455]	chr2	239742	8	EXON_PSEUDO	EXON_PSEUDO	ATP1B3P1	ENSG00000271707.1	ENST00000605365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	3.52659	4.628475	5.73036	6.87022e-4	2.37045e-6	0.00876781	8.28831e-5
chr7	92725709	92725793	8926107	0	-	0.440476	(0.42,0.455]	chr7	681173	2	CDS	CDS:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.52659	4.628475	5.73036	6.87022e-4	2.37045e-6	0.00876781	8.28831e-5
chr20	3870835	3870935	17659181	0	+	0.54	(0.53,0.59]	chr20	1493074	48	UTR3	UTR3:EXON_MRNA	MAVS	ENSG00000088888.18	ENST00000416600.6:ENST00000428216.4	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.99191	4.628410000000001	5.26491	6.31437e-5	5.86351e-5	0.00129243	0.00124286
chr3	123106748	123106842	3706521	0	+	0.510638	(0.49,0.53]	chr3	316804	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5:ENST00000495004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	2.69746	4.628255	6.55905	0.00380414	4.57009e-9	0.0317723	3.94074e-7
chr13	46777534	46777623	14012277	0	-	0.41573	(0.39,0.42]	chr13	1098846	1	CDS	CDS:EXON_MRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	4.05131	4.6278299999999994	5.20435	2.91423e-5	1.11123e-7	7.26551e-4	6.12173e-6
chr1	53825797	53825866	1026160	0	-	0.376812	(0.36,0.39]	chr1	106425	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	2.6387	4.62775	6.6168	3.96422e-4	1.34372e-9	0.00587914	1.36438e-7
chr15	65877761	65877821	14982222	0	+	0.366667	(0.36,0.39]	chr15	1177729	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000568850.5:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	4.15583	4.6276150000000005	5.0994	4.68763e-5	1.9188e-5	0.00107286	4.68725e-4
chr5	119652617	119652713	6787826	0	-	0.520833	(0.49,0.53]	chr5	520397	2	EXON_PSEUDO	EXON_PSEUDO	TUBAP15	ENSG00000250895.1	ENST00000505780.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	75	2	4.25722	4.62701	4.9968	1.00699e-5	4.17016e-8	3.03291e-4	2.62949e-6
chr1	160314057	160314125	1328943	0	-	0.5	(0.49,0.53]	chr1	136082	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	4.46303	4.626945	4.79086	4.20783e-4	2.57025e-6	0.00611538	8.8687100000000007e-05
chr10	79352316	79352392	11148670	0	+	0.513158	(0.49,0.53]	chr10	847439	1	CDS	CDS:UTR3:EXON_MRNA	PPIF	ENSG00000108179.14	ENST00000225174.8:ENST00000472580.6:ENST00000448165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	4.46303	4.626945	4.79086	4.20783e-4	2.57025e-6	0.00611538	8.8687100000000007e-05
chr5	138561719	138561789	6862420	0	-	0.4	(0.39,0.42]	chr5	525212	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	3.98668	4.6269	5.26712	2.20532e-6	3.45202e-9	8.59066e-5	3.09496e-7
chr15	48334416	48334508	14921496	0	+	0.456522	(0.455,0.49]	chr15	1173066	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000561350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	3.20348	4.6267949999999995	6.05011	3.27782e-4	1.27868e-7	0.0046686	7.7505e-6
chr3	13379562	13379641	4046858	0	-	0.632911	(0.59,1]	chr3	339694	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	2.9891200000000002	4.626655	6.26419	0.00823979	2.94176e-6	0.0540283	9.91141e-5
chr16	58707886	58707980	15967622	0	-	0.43617	(0.42,0.455]	chr16	1281403	9	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.73638	4.626565	5.51675	5.14372e-6	1.4989e-6	1.73456e-4	5.63087e-5
chr2	27205349	27205426	2569417	0	-	0.688312	(0.59,1]	chr2	231216	1	CDS	CDS:UTR3:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000464538.1:ENST00000445802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.34171	4.626365	5.91102	0.00234977	2.06903e-5	0.0222173	4.99825e-4
chr7	866009	866067	8093832	0	+	0.62069	(0.59,1]	chr7	618475	2	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.34171	4.626365	5.91102	0.00234977	2.06903e-5	0.0222173	4.99825e-4
chr16	61055492	61055586	15969143	0	-	0.468085	(0.455,0.49]	chr16	1281543	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPS27AP16	ENSG00000224631.4	ENST00000591758.1:ENST00000492222.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	107	2	4.30437	4.626355	4.94834	4.87872e-8	1.20326e-8	3.33126e-6	9.07473e-7
chr17	1858038	1858119	16402469	0	-	0.518519	(0.49,0.53]	chr17	1335108	1	EXON_PSEUDO	EXON_PSEUDO	AC016292.3	ENSG00000108958.4	ENST00000451056.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	43	2	3.42954	4.625855	5.82217	0.00105489	1.36598e-6	0.0123035	5.18684e-5
chrX	134169537	134169612	19243370	0	-	0.453333	(0.42,0.455]	chrX	1634461	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:PRIMIRNA	MIR363:AC002407.3:MIR92A2:MIR19B2:MIR20B:MIR18B	ENSG00000284499.1:ENSG00000283638.2:ENSG00000284538.1:ENSG00000284107.1:ENSG00000284043.1:ENSG00000283931.1	ENST00000384840.3:ENST00000636668.1:ENST00000385299.1:ENST00000385077.3:ENST00000384977.1:ENST00000454574.4	miRNA	miRNA	miRNA:lncRNA	miRNA:lncRNA:primary_miRNA	1	46	2	3.05889	4.625579999999999	6.19227	0.00524205	8.32224e-8	0.0399155	4.76997e-6
chr2	96186630	96186729	2789827	0	-	0.50505	(0.49,0.53]	chr2	248609	19	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.54118	4.62511	5.70904	4.50577e-5	2.30382e-6	9.4221e-4	8.86852e-5
chr11	7995944	7996022	11789506	0	+	0.448718	(0.42,0.455]	chr11	902522	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	137	2	4.55585	4.624890000000001	4.69393	3.8764e-7	1.3872600000000001e-10	1.99378e-5	1.80999e-8
chr3	47587914	47588012	4161760	0	-	0.510204	(0.49,0.53]	chr3	348302	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	169	2	4.60962	4.62479	4.63996	6.2765e-10	5.43503e-10	7.59962e-8	6.11475e-8
chr2	239915688	239915788	3244905	0	-	0.35	(0.33,0.36]	chr2	285963	23	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	4.37089	4.62427	4.87765	2.2423e-4	5.4707e-6	0.00344776	1.82072e-4
chr1	186333303	186333394	1411925	0	-	0.483516	(0.455,0.49]	chr1	142840	3	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	4.00069	4.623965	5.24724	5.13615e-5	3.09759e-5	0.00104999	7.62166e-4
chr6	30619920	30619989	7111671	0	+	0.478261	(0.455,0.49]	chr6	544914	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	4.00069	4.623965	5.24724	5.13615e-5	3.09759e-5	0.00104999	7.62166e-4
chr1	173741758	173741843	549503	0	+	0.411765	(0.39,0.42]	chr1	58349	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	KLHL20:RP11-360D2.2	ENSG00000076321.11:ENSG00000225591.2	ENST00000209884.5:ENST00000455497.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	46	2	3.6576	4.623315	5.58903	2.40332e-5	5.14263e-6	6.22273e-4	1.58468e-4
chr20	49113626	49113722	17999391	0	-	0.489583	(0.455,0.49]	chr20	1525563	4	UTR3	UTR3:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	4.17407	4.622895	5.07172	8.3067e-5	1.754e-5	0.00171126	4.38078e-4
chr11	47175014	47175088	12385449	0	-	0.445946	(0.42,0.455]	chr11	956482	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5:ENST00000525398.5:ENST00000531750.5:ENST00000525314.5:ENST00000629231.2:ENST00000527097.5:ENST00000528444.5:ENST00000524727.5:ENST00000529599.5:ENST00000528041.5:ENST00000529439.5:ENST00000530596.5:ENST00000533939.5:ENST00000526185.5:ENST00000528708.5:ENST00000524586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	3.65978	4.62271	5.58564	2.09396e-5	3.24669e-6	5.04211e-4	1.18495e-4
chr12	100009739	100009838	13503226	0	-	0.484848	(0.455,0.49]	chr12	1061157	8	EXON_PSEUDO	EXON_PSEUDO	RPS4XP1	ENSG00000214203.4	ENST00000482189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	47	2	2.9967	4.62213	6.24756	0.00650423	4.80845e-8	0.0454205	2.97443e-6
chr2	187465002	187465098	3070149	0	-	0.302083	(0.29,0.33]	chr2	271827	9	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.23505	4.6220300000000005	6.00901	1.0759e-4	1.36977e-7	0.00207122	7.34618e-6
chr12	113387012	113387089	13101721	0	+	0.623377	(0.59,1]	chr12	1022436	2	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34487	4.62172	4.89857	0.0123678	0.00182139	0.0705839	0.0176016
chr19	54189494	54189591	17627830	0	-	0.701031	(0.59,1]	chr19	1488063	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MBOAT7	ENSG00000125505.17	ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000391754.5:ENST00000474910.5:ENST00000495968.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.34487	4.62172	4.89857	0.0123678	0.00182139	0.0705839	0.0176016
chr5	77785347	77785441	6050218	0	+	0.648936	(0.59,1]	chr5	474661	6	EXON_PSEUDO	EXON_PSEUDO	ACTBP2	ENSG00000213763.4	ENST00000515712.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	32	2	4.34487	4.62172	4.89857	0.0123678	0.00182139	0.0705839	0.0176016
chr17	58346147	58346245	16612605	0	-	0.44898	(0.42,0.455]	chr17	1364733	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUPT4H1:RP5-1171I10.8	ENSG00000213246.7:ENSG00000285897.1	ENST00000581166.5:ENST00000225504.8:ENST00000648873.1:ENST00000577396.5:ENST00000581204.1:ENST00000581540.5:ENST00000580947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.95538	4.6216	5.28782	6.68846e-5	3.65299e-5	0.00142352	7.95843e-4
chr5	10708371	10708471	6447832	0	-	0.45	(0.42,0.455]	chr5	502271	244	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	3.95538	4.6216	5.28782	6.68846e-5	3.65299e-5	0.00142352	7.95843e-4
chr2	238234040	238234140	2457471	0	+	0.44	(0.42,0.455]	chr2	221963	4	SS5_PROX	SS5_PROX:INTRON	AC096574.4	ENSG00000225057.2	ENST00000456601.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	3.35491	4.62144	5.88797	1.39104e-4	3.72505e-7	0.00235518	1.92638e-5
chr2	61188009	61188101	2687374	0	-	0.402174	(0.39,0.42]	chr2	239900	7	UTR3	UTR3:EXON_MRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.23057	4.62124	6.01191	3.34829e-4	2.69432e-7	0.00509483	1.30302e-5
chr1	100082002	100082055	376759	0	+	0.509434	(0.49,0.53]	chr1	36523	1	CDS	CDS:UTR3:EXON_MRNA	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12263	4.620655	5.11868	0.00591451	9.66505e-5	0.0427941	0.00175267
chr14	74486382	74486436	14705350	0	-	0.5	(0.49,0.53]	chr14	1151751	2	CDS	CDS:EXON_MRNA	NPC2	ENSG00000119655.11	ENST00000434013.6:ENST00000541064.5:ENST00000555619.6:ENST00000238633.6:ENST00000554482.1:ENST00000553490.5:ENST00000556009.5:ENST00000557510.5:ENST00000555592.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.12263	4.620655	5.11868	0.00591451	9.66505e-5	0.0427941	0.00175267
chr19	49015650	49015686	17368346	0	+	0.527778	(0.49,0.53]	chr19	1442335	1	CDS	CDS:UTR3:EXON_MRNA	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000595002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.12263	4.620655	5.11868	0.00591451	9.66505e-5	0.0427941	0.00175267
chr11	107803088	107803155	12584964	0	-	0.477612	(0.455,0.49]	chr11	975970	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6:ENST00000533664.1:ENST00000375682.8:ENST00000532513.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.26593	4.62059	4.97525	0.00372962	1.38474e-4	0.0302984	0.00254294
chr21	8419405	8419503	18041733	0	+	0.459184	(0.455,0.49]	chr21	1530889	13	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.26593	4.62059	4.97525	0.00372962	1.38474e-4	0.0302984	0.00254294
chr7	117119568	117119644	8479899	0	+	0.460526	(0.455,0.49]	chr7	647628	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7:CTB-114A6.2	ENSG00000004866.22:ENSG00000288635.1	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000421345.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000465133.5:ENST00000477742.5:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5:ENST00000490039.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.26593	4.62059	4.97525	0.00372962	1.38474e-4	0.0302984	0.00254294
chr10	96544075	96544140	11640326	0	-	0.369231	(0.36,0.39]	chr10	886593	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000490192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	4.37423	4.62013	4.86603	1.68962e-4	4.42053e-6	0.00297945	1.39924e-4
chr11	63750059	63750128	11976759	0	+	0.492754	(0.49,0.53]	chr11	918355	2	CDS	CDS:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.1011	4.62004	6.13898	5.69237e-4	1.37435e-7	0.00778538	7.34618e-6
chr5	171407699	171407718	6384397	0	+	0.526316	(0.49,0.53]	chr5	495837	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	3.1011	4.62004	6.13898	5.69237e-4	1.37435e-7	0.00778538	7.34618e-6
chr1	27526782	27526881	113279	0	+	0.484848	(0.455,0.49]	chr1	13755	5	INTRON	INTRON	RP1-159A19.4	ENSG00000237429.1	ENST00000443579.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	4.36307	4.6197	4.87633	0.00218641	2.95855e-4	0.0208941	0.00432147
chr14	20333218	20333312	14517435	0	-	0.478723	(0.455,0.49]	chr14	1136534	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000358932.9:ENST00000556854.5:ENST00000557665.5:ENST00000555348.5:ENST00000555963.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.36307	4.6197	4.87633	0.00218641	2.95855e-4	0.0208941	0.00432147
chr15	80978821	80978920	15405872	0	-	0.464646	(0.455,0.49]	chr15	1218138	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MESD	ENSG00000117899.11	ENST00000619987.4:ENST00000561312.5:ENST00000422879.3:ENST00000560189.1:ENST00000559537.1:ENST00000261758.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.36307	4.6197	4.87633	0.00218641	2.95855e-4	0.0208941	0.00432147
chr3	186596975	186597053	3957259	0	+	0.461538	(0.455,0.49]	chr3	333582	1	EXON_PSEUDO	EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	RP11-134F2.8:RP11-134F2.7	ENSG00000283149.1:ENSG00000283390.1	ENST00000418776.1:ENST00000538831.3	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	23	2	4.36307	4.6197	4.87633	0.00218641	2.95855e-4	0.0208941	0.00432147
chr5	142001058	142001155	6878177	0	-	0.463918	(0.455,0.49]	chr5	526950	5	UTR3	UTR3:EXON_MRNA:INTRON	GNPDA1	ENSG00000113552.16	ENST00000513454.5:ENST00000311337.11:ENST00000500692.6:ENST00000503794.5:ENST00000508177.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.36307	4.6197	4.87633	0.00218641	2.95855e-4	0.0208941	0.00432147
chr7	139534394	139534471	8566444	0	+	0.467532	(0.455,0.49]	chr7	653692	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	CLEC2L:ERHP1	ENSG00000236279.7:ENSG00000254270.1	ENST00000422142.7:ENST00000521281.1:ENST00000523006.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	23	2	4.36307	4.6197	4.87633	0.00218641	2.95855e-4	0.0208941	0.00432147
chr9	73169092	73169154	10304783	0	+	0.403226	(0.39,0.42]	chr9	776063	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000491192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	4.16663	4.619605	5.07258	1.84729e-5	1.94725e-8	5.02409e-4	1.37715e-6
chr2	171748086	171748184	2208078	0	+	0.27551	[0,0.29]	chr2	202113	3	UTR3	UTR3:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000508530.5:ENST00000409197.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	4.03506	4.61955	5.20404	4.20009e-5	2.26341e-5	8.92247e-4	5.9266e-4
chrX	49552443	49552527	18694883	0	+	0.511905	(0.49,0.53]	chrX	1594943	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GAGE12F:GAGE12E	ENSG00000236362.8:ENSG00000216649.4	ENST00000639028.1:ENST00000381698.4	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	3.94726	4.6194749999999996	5.29169	2.67753e-7	3.21894e-9	1.45793e-5	2.90715e-7
chr4	39457585	39457606	5383261	0	-	0.428571	(0.42,0.455]	chr4	431469	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000503040.5:ENST00000511075.5:ENST00000437992.2:ENST00000514842.6:ENST00000645585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	3.2972	4.61936	5.94152	1.93851e-4	2.47621e-7	0.00307904	1.36676e-5
chr17	7579583	7579677	16105706	0	+	0.56383	(0.53,0.59]	chr17	1296981	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	48	2	3.30943	4.619135	5.92884	0.0018255	1.11987e-6	0.0183913	4.4003e-5
chr7	103539160	103539243	8963650	0	-	0.578313	(0.53,0.59]	chr7	686160	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.30943	4.619135	5.92884	0.0018255	1.11987e-6	0.0183913	4.4003e-5
chr12	104757419	104757514	13062187	0	+	0.578947	(0.53,0.59]	chr12	1017752	6	CDS	CDS:EXON_MRNA	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.55001	4.61906	5.68811	6.11776e-4	5.40688e-6	0.00818575	1.64762e-4
chr15	41480984	41481083	14887014	0	+	0.575758	(0.53,0.59]	chr15	1169493	4	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.14	ENST00000389629.8	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.6522	4.61875	5.5853	2.31822e-5	9.83355e-6	5.49766e-4	2.98194e-4
chr13	110973553	110973652	13897442	0	+	0.343434	(0.33,0.36]	chr13	1089162	71	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	41	2	3.4399	4.6186050000000005	5.79731	1.29517e-4	8.38679e-7	0.00242147	3.43427e-5
chr1	1661574	1661672	828542	0	-	0.408163	(0.39,0.42]	chr1	82665	2	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	4.42473	4.6185849999999995	4.81244	3.06235e-6	1.71008e-7	1.13887e-4	8.87341e-6
chr5	54079974	54080074	6577864	0	-	0.37	(0.36,0.39]	chr5	509107	40	INTRON	INTRON	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.6181	4.61852	6.61894	0.00176908	2.89518e-10	0.0172426	3.86653e-8
chr11	64223312	64223392	11979523	0	+	0.5	(0.49,0.53]	chr11	918811	1	CDS	CDS:EXON_MRNA	FERMT3	ENSG00000149781.13	ENST00000345728.10:ENST00000279227.9:ENST00000545896.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.51981	4.61851	5.71721	6.88328e-4	2.77472e-6	0.00876781	9.47025e-5
chr16	31132681	31132771	15917006	0	-	0.677778	(0.59,1]	chr16	1275841	1	CDS	CDS:EXON_MRNA	PRSS8	ENSG00000052344.16	ENST00000317508.11:ENST00000568261.5:ENST00000567531.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	3.84557	4.618345	5.39112	0.0410704	2.53595e-4	0.163285	0.00381472
chr8	144083713	144083787	9650247	0	+	0.675676	(0.59,1]	chr8	731481	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPAA1	ENSG00000197858.11	ENST00000529503.5:ENST00000526341.5:ENST00000525087.5:ENST00000532758.5:ENST00000530633.1:ENST00000355091.9:ENST00000361036.10:ENST00000524418.5:ENST00000528073.5:ENST00000530258.1:ENST00000527144.5:ENST00000525308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	3.84557	4.618345	5.39112	0.0410704	2.53595e-4	0.163285	0.00381472
chr21	14375651	14375735	18163711	0	-	0.452381	(0.42,0.455]	chr21	1542405	1	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	4.03383	4.6182549999999996	5.20268	4.24324e-5	3.59669e-5	8.98949e-4	8.71318e-4
chr10	96750374	96750461	11210217	0	+	0.482759	(0.455,0.49]	chr10	852817	2	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	83	2	2.6394	4.617555	6.59571	1.4794e-4	1.2059e-9	0.00248107	1.33979e-7
chr19	42670357	42670448	17341690	0	+	0.527473	(0.49,0.53]	chr19	1437979	1	EXON_PSEUDO	EXON_PSEUDO	RPS10P28	ENSG00000243167.1	ENST00000480396.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	42	2	4.06942	4.617495	5.16557	6.36135e-5	3.44689e-5	0.00136069	7.57659e-4
chr20	35555043	35555075	17769452	0	+	0.5	(0.49,0.53]	chr20	1501132	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000413587.5:ENST00000496172.5:ENST00000482338.5:ENST00000465298.1:ENST00000475211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	4.06942	4.617495	5.16557	6.36135e-5	3.44689e-5	0.00136069	7.57659e-4
chr1	150559286	150559376	468520	0	+	0.544444	(0.53,0.59]	chr1	47498	1	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	3.21941	4.61716	6.01491	0.00266171	6.18274e-7	0.0240332	2.65059e-5
chr5	154966797	154966897	6315542	0	+	0.57	(0.53,0.59]	chr5	492620	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5:ENST00000520040.5:ENST00000518364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.21941	4.61716	6.01491	0.00266171	6.18274e-7	0.0240332	2.65059e-5
chr1	227661273	227661372	742217	0	+	0.373737	(0.36,0.39]	chr1	74893	56	UTR3	UTR3:EXON_MRNA:INTRON	ZNF678	ENSG00000181450.18	ENST00000608949.5:ENST00000343776.10:ENST00000397097.4	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	3.93378	4.617005	5.30023	1.38946e-5	2.91983e-7	3.94563e-4	1.39909e-5
chr13	99529466	99529530	13865306	0	+	0.328125	(0.29,0.33]	chr13	1087158	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.34203	4.616875	6.89172	0.010113	4.60816e-11	0.0626311	6.82387e-9
chr13	39012789	39012888	13976226	0	-	0.585859	(0.53,0.59]	chr13	1096566	2	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	4.03453	4.616680000000001	5.19883	8.7034e-5	4.6e-5	0.00177086	9.56296e-4
chr9	33036631	33036689	10233712	0	+	0.465517	(0.455,0.49]	chr9	769274	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJA1	ENSG00000086061.16	ENST00000330899.5:ENST00000495015.5:ENST00000465677.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	4.0992	4.616009999999999	5.13282	2.73975e-5	1.20095e-8	6.95757e-4	9.06312e-7
chr19	8322271	8322368	17219832	0	+	0.525773	(0.49,0.53]	chr19	1417494	1	UTR3	UTR3:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	725	2	4.39741	4.615545	4.83368	1.84619e-12	1e-12	4.22365e-10	2.25522e-10
chr6	170543665	170543730	8091087	0	-	0.415385	(0.39,0.42]	chr6	618034	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	141	2	4.33017	4.61525	4.90033	1.20076e-9	5.66121e-10	1.23539e-7	6.96803e-8
chr11	44130044	44130138	11926430	0	+	0.425532	(0.42,0.455]	chr11	911557	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000525559.1:ENST00000534048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.7523	4.615245	6.47819	0.0153283	8.14533e-9	0.0828908	6.49842e-7
chr21	42848631	42848730	18270842	0	-	0.656566	(0.59,1]	chr21	1549336	50	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	4.06457	4.615164999999999	5.16576	6.55716e-4	9.48087e-5	0.0080931	0.00188744
chr14	95544324	95544424	14471356	0	+	0.3	(0.29,0.33]	chr14	1130380	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	4.60331	4.61481	4.62631	1.13994e-6	6.57711e-7	4.91686e-5	2.80312e-5
chr2	44270520	44270620	1767517	0	+	0.61	(0.59,1]	chr2	171429	263	INTRON	INTRON	RP11-24I5.1	ENSG00000285542.1	ENST00000649044.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	216	2	4.47515	4.61476	4.75437	2.02938e-6	3.23877e-8	8.02048e-5	2.13198e-6
chr5	75355134	75355214	6037105	0	+	0.45	(0.42,0.455]	chr5	473638	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000515776.1:ENST00000508070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	4.14705	4.61428	5.08151	2.1071e-5	1.44228e-8	5.06044e-4	1.16449e-6
chr9	97927284	97927383	10759623	0	-	0.323232	(0.29,0.33]	chr9	814684	6	UTR3	UTR3:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.62683	4.614125	5.60142	6.18968e-4	2.77244e-6	0.00822794	9.47025e-5
chr11	78101088	78101141	12477711	0	-	0.490566	(0.49,0.53]	chr11	970683	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000531213.5:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.23759	4.613965	4.99034	0.00436474	1.6002e-4	0.0335517	0.00286408
chr20	32849517	32849615	17755868	0	+	0.408163	(0.39,0.42]	chr20	1498956	9	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.14886	4.61369	5.07852	0.00415881	1.02164e-4	0.0325842	0.00183311
chr3	100717216	100717314	3637469	0	+	0.418367	(0.39,0.42]	chr3	311829	30	INTRON	INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.14886	4.61369	5.07852	0.00415881	1.02164e-4	0.0325842	0.00183311
chr12	55969525	55969576	12896910	0	+	0.529412	(0.49,0.53]	chr12	1003791	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000554619.5:ENST00000556276.5:ENST00000556656.5:ENST00000556146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr13	28215105	28215204	13660237	0	+	0.50505	(0.49,0.53]	chr13	1076619	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	PAN3:EEF1A1P3	ENSG00000152520.14:ENSG00000232587.1	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000417549.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr17	1650901	1650956	16401262	0	-	0.509091	(0.49,0.53]	chr17	1334825	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr22	49655523	49655623	18544431	0	-	0.5	(0.49,0.53]	chr22	1583984	281	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr3	128100669	128100744	4440379	0	-	0.52	(0.49,0.53]	chr3	368865	2	CDS	CDS:EXON_MRNA	RUVBL1	ENSG00000175792.12	ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000478892.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr8	97865139	97865225	9507232	0	+	0.511628	(0.49,0.53]	chr8	722770	2	EXON_PSEUDO	EXON_PSEUDO	RPS23P1	ENSG00000243504.1	ENST00000491662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr8	113293404	113293504	10024615	0	-	0.5	(0.49,0.53]	chr8	755116	143	INTRON	INTRON	CSMD3	ENSG00000164796.18	ENST00000297405.10:ENST00000343508.7:ENST00000455883.2:ENST00000497026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.28332	4.613474999999999	4.94363	0.00338762	2.3417e-4	0.0288632	0.00355764
chr9	133363592	133363660	10880449	0	-	0.426471	(0.42,0.455]	chr9	825843	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	133	2	3.14242	4.61346	6.0845	2.89452e-5	1.21725e-12	7.24838e-4	2.68104e-10
chr21	33907426	33907453	18224301	0	-	0.333333	(0.33,0.36]	chr21	1546657	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.56949	4.61339	5.65729	5.48184e-4	1.06014e-6	0.00697082	4.64027e-5
chr1	152032661	152032761	1295112	0	-	0.49	(0.455,0.49]	chr1	129727	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	121	2	3.34125	4.613275	5.8853	6.54172e-6	5.417e-12	1.94116e-4	1.09638e-9
chr3	49099337	49099431	4172445	0	-	0.62766	(0.59,1]	chr3	350350	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	QARS1:MIR6890	ENSG00000172053.18:ENSG00000284488.1	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000637543.1:ENST00000637908.1:ENST00000634432.1:ENST00000620931.1:ENST00000482468.6	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	67	2	3.17616	4.612905	6.04965	0.00434232	9.85057e-6	0.0339139	2.72926e-4
chr6	31780704	31780783	7662414	0	-	0.544304	(0.53,0.59]	chr6	585272	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1:ENST00000482996.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	4.102	4.6125050000000005	5.12301	1.2852e-4	1.01285e-6	0.00241206	4.03248e-5
chr17	17814889	17814944	16465696	0	-	0.563636	(0.53,0.59]	chr17	1344691	2	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000447641.5:ENST00000581707.1:ENST00000490796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.29588	4.61236	5.92884	1.96478e-4	1.11987e-6	0.00335505	4.4003e-5
chr6	143501931	143502026	8005305	0	-	0.484211	(0.455,0.49]	chr6	611753	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000451668.1:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.65079	4.611985	5.57318	3.61776e-4	6.11867e-6	0.00544764	1.83393e-4
chr7	76302812	76302911	8343341	0	+	0.767677	(0.59,1]	chr7	636372	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000675733.1:ENST00000674560.1:ENST00000675624.1:ENST00000675488.1:ENST00000676398.1:ENST00000447574.1:ENST00000674650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	171	2	4.21149	4.61181	5.01213	2.03623e-6	3.06346e-7	8.03841e-5	1.4575e-5
chr10	98162582	98162682	11215152	0	+	0.4	(0.39,0.42]	chr10	853329	3	SS3_PROX	SS3_PROX:INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.3313	4.61163	4.89196	0.00209984	2.62166e-4	0.0204266	0.0039188
chr14	23098179	23098278	14175751	0	+	0.393939	(0.39,0.42]	chr14	1110555	2	UTR3	UTR3:EXON_MRNA	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.3313	4.61163	4.89196	0.00209984	2.62166e-4	0.0204266	0.0039188
chr7	127589484	127589539	8514780	0	+	0.4	(0.39,0.42]	chr7	649575	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARF5	ENSG00000004059.11	ENST00000463733.5:ENST00000415666.1:ENST00000467281.5:ENST00000000233.10:ENST00000489673.1:ENST00000459680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.3313	4.61163	4.89196	0.00209984	2.62166e-4	0.0204266	0.0039188
chr1	9734056	9734142	854653	0	-	0.569767	(0.53,0.59]	chr1	86254	2	CDS	CDS:UTR3:EXON_MRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.82407	4.611535	5.399	0.0179666	3.02387e-5	0.0918323	6.78876e-4
chr16	14876358	14876438	15561037	0	+	0.55	(0.53,0.59]	chr16	1231991	1	CDS	CDS:EXON_MRNA	NOMO1	ENSG00000103512.15	ENST00000287667.12:ENST00000620755.4:ENST00000610363.4	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	3.82407	4.611535	5.399	0.0179666	3.02387e-5	0.0918323	6.78876e-4
chr17	28879805	28879899	16488316	0	-	0.585106	(0.53,0.59]	chr17	1348326	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	29	2	3.82407	4.611535	5.399	0.0179666	3.02387e-5	0.0918323	6.78876e-4
chr17	42614941	42615041	16229325	0	+	0.58	(0.53,0.59]	chr17	1313177	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TUBG1	ENSG00000131462.9	ENST00000680678.1:ENST00000681413.1:ENST00000680672.1:ENST00000681490.1:ENST00000681947.1:ENST00000588056.2:ENST00000251413.8:ENST00000589688.2:ENST00000681919.1:ENST00000681114.1:ENST00000680617.1:ENST00000679484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.82407	4.611535	5.399	0.0179666	3.02387e-5	0.0918323	6.78876e-4
chr20	44503904	44503995	17982037	0	-	0.494505	(0.49,0.53]	chr20	1523378	2	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	3.45847	4.611515000000001	5.76456	1.57714e-6	3.21719e-7	6.4504e-5	1.51945e-5
chr11	57737607	57737668	11952400	0	+	0.459016	(0.455,0.49]	chr11	914719	1	CDS	CDS:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	4.06083	4.61149	5.16215	5.04348e-5	3.56832e-5	0.00113788	7.81595e-4
chr17	8204801	8204870	16432114	0	-	0.492754	(0.49,0.53]	chr17	1340325	2	UTR3	UTR3:EXON_MRNA	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5	protein_coding	protein_coding	protein_coding	protein_coding	5	135	2	4.37168	4.6114049999999995	4.85113	1.24602e-7	9.19304e-10	7.5922e-6	9.77235e-8
chr12	49003756	49003839	13322968	0	-	0.566265	(0.53,0.59]	chr12	1045343	1	CDS	CDS:UTR3:EXON_MRNA	RP11-386G11.12:PRKAG1	ENSG00000288710.1:ENSG00000181929.13	ENST00000683988.1:ENST00000548065.7:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551770.5:ENST00000551696.5:ENST00000550125.5:ENST00000552793.5:ENST00000548950.5:ENST00000549726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.55274	4.6110500000000005	4.66936	0.00167999	0.00103174	0.0164993	0.0121443
chr6	35555872	35555970	7130947	0	+	0.530612	(0.53,0.59]	chr6	549047	1	EXON_PSEUDO	EXON_PSEUDO	RP3-340B19.2	ENSG00000219023.1	ENST00000403958.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.55274	4.6110500000000005	4.66936	0.00167999	0.00103174	0.0164993	0.0121443
chr7	101206778	101206841	8953626	0	-	0.571429	(0.53,0.59]	chr7	684652	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.55274	4.6110500000000005	4.66936	0.00167999	0.00103174	0.0164993	0.0121443
chr6	54624800	54624898	7186167	0	+	0.540816	(0.53,0.59]	chr6	555767	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP44	ENSG00000220773.1	ENST00000406712.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.5586	4.61104	4.66348	0.00161229	0.00107799	0.0169168	0.0118238
chr17	76627498	76627583	16691379	0	-	0.529412	(0.49,0.53]	chr17	1374953	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000589004.5:ENST00000590878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	4.32769	4.61087	4.89405	2.57983e-4	6.54988e-6	0.00419998	1.94116e-4
chr12	54343224	54343316	12892075	0	+	0.413043	(0.39,0.42]	chr12	1002988	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-968A15.8:COPZ1	ENSG00000258344.1:ENSG00000111481.10	ENST00000553061.1:ENST00000552848.5:ENST00000548076.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1:ENST00000550713.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	51	2	2.95786	4.6107	6.26354	0.00138212	3.79414e-8	0.0149186	2.43463e-6
chr6	44232806	44232906	7161516	0	+	0.65	(0.59,1]	chr6	553810	1	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	206	2	4.19932	4.610525	5.02173	3.79201e-7	2.3242e-7	1.95857e-5	1.15066e-5
chr11	46383494	46383580	11935317	0	+	0.686047	(0.59,1]	chr11	912497	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MDK	ENSG00000110492.16	ENST00000405308.6:ENST00000359803.7:ENST00000617138.4:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	84	2	3.16732	4.6101399999999995	6.05296	5.6576e-4	1.41714e-5	0.00718071	4.01358e-4
chr7	101210092	101210161	8953666	0	-	0.594203	(0.59,1]	chr7	684670	1	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000487563.1:ENST00000460132.5:ENST00000440925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.11672	4.61009	5.10346	0.0222273	8.40506e-4	0.105595	0.00981548
chr11	18396818	18396842	11831438	0	+	0.375	(0.36,0.39]	chr11	905991	1	CDS	CDS:UTR5:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000469976.2:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000535451.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	90	2	3.80747	4.609935	5.4124	1.0137e-6	7.80653e-10	4.48113e-5	8.40604e-8
chr1	150510875	150510955	468332	0	+	0.6125	(0.59,1]	chr1	47400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000498579.5:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.14483	4.60968	5.07453	0.0183207	0.00117617	0.0945306	0.0132131
chr1	631030	631130	823339	0	-	0.46	(0.455,0.49]	chr1	81477	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	7	184	2	4.58846	4.609485	4.63051	6.5205e-7	4.31999e-12	3.08344e-5	8.29024e-10
chr9	87728065	87728149	10347553	0	+	0.452381	(0.42,0.455]	chr9	778719	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	144	2	4.28	4.609360000000001	4.93872	5.07972e-8	4.50885e-10	3.4372e-6	5.17986e-8
chr1	149885216	149885311	1287095	0	-	0.389474	(0.36,0.39]	chr1	127851	9	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	3.74198	4.609235	5.47649	4.3709e-6	2.60335e-7	1.52262e-4	1.26835e-5
chr11	123061144	123061224	12637006	0	-	0.5	(0.49,0.53]	chr11	980729	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000227378.7:ENST00000526110.5:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000534567.5:ENST00000527387.5:ENST00000532182.5:ENST00000524590.5:ENST00000530391.1:ENST00000531063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	215	2	4.59733	4.6089850000000006	4.62064	9.61459e-11	6.19457e-11	1.31389e-8	9.72972e-9
chr1	19241015	19241078	877375	0	-	0.428571	(0.42,0.455]	chr1	90517	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	3.17449	4.60874	6.04299	7.7054e-5	1.1188e-7	0.00146588	6.92817e-6
chr9	73159328	73159423	10304673	0	+	0.431579	(0.42,0.455]	chr9	776019	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5:ENST00000376911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	141	2	4.39812	4.608705	4.81929	6.99248e-8	8.61007e-11	4.55845e-6	1.18825e-8
chr14	55283926	55284026	14298464	0	+	0.39	(0.36,0.39]	chr14	1117611	47	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	4.38481	4.608645	4.83248	1.26726e-7	8.19365e-8	7.71033e-6	4.71175e-6
chr1	65592795	65592865	253228	0	+	0.385714	(0.36,0.39]	chr1	28815	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	4.07544	4.608625	5.14181	3.61377e-5	9.60154e-9	8.73633e-4	7.499e-7
chr17	1771993	1772075	16083776	0	+	0.52439	(0.49,0.53]	chr17	1293241	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	SERPINF1	ENSG00000132386.11	ENST00000254722.9:ENST00000576406.5:ENST00000570820.1:ENST00000573763.1:ENST00000572048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.11892	4.608345	6.09777	0.00398244	1.87775e-7	0.0322851	9.63683e-6
chr7	44115345	44115396	8796676	0	-	0.529412	(0.49,0.53]	chr7	670770	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLD2	ENSG00000106628.12	ENST00000610533.6:ENST00000406581.6:ENST00000489883.1:ENST00000223361.7:ENST00000452185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.11892	4.608345	6.09777	0.00398244	1.87775e-7	0.0322851	9.63683e-6
chr1	77166718	77166774	1109966	0	-	0.339286	(0.33,0.36]	chr1	111561	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5:ENST00000359130.1:ENST00000478391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.33896	4.608305	4.87765	0.00182033	2.2423e-4	0.0183913	0.00344776
chr19	14792317	14792389	17244258	0	+	0.333333	(0.33,0.36]	chr19	1422236	1	EXON_PSEUDO	EXON_PSEUDO	AC005255.3	ENSG00000256210.3	ENST00000593748.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.33896	4.608305	4.87765	0.00182033	2.2423e-4	0.0183913	0.00344776
chr20	35393410	35393500	17953478	0	-	0.355556	(0.33,0.36]	chr20	1520773	8	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.33896	4.608305	4.87765	0.00182033	2.2423e-4	0.0183913	0.00344776
chr6	87609162	87609229	7270496	0	+	0.358209	(0.33,0.36]	chr6	560479	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1:ENST00000478028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	4.33896	4.608305	4.87765	0.00182033	2.2423e-4	0.0183913	0.00344776
chr7	103098738	103098831	8440950	0	+	0.333333	(0.33,0.36]	chr7	644980	3	UTR3	UTR3:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000323716.8:ENST00000479145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.33896	4.608305	4.87765	0.00182033	2.2423e-4	0.0183913	0.00344776
chr5	108785097	108785188	6137917	0	+	0.505495	(0.49,0.53]	chr5	479759	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	FER:CTC-329H14.1	ENSG00000151422.13:ENSG00000249921.2	ENST00000509035.5:ENST00000281092.9:ENST00000513676.5:ENST00000504143.6:ENST00000502752.1:ENST00000506742.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	26	2	3.94177	4.60827	5.27477	0.0104929	4.14521e-5	0.063428	8.8376e-4
chr19	45410546	45410641	17353649	0	+	0.484211	(0.455,0.49]	chr19	1439878	12	UTR3	UTR3:EXON_MRNA	POLR1G	ENSG00000117877.11	ENST00000309424.8	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	4.15342	4.6081199999999995	5.06282	1.16789e-4	5.52725e-7	0.0020505	2.69113e-5
chr5	72320221	72320255	6632337	0	-	0.529412	(0.49,0.53]	chr5	512623	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000513900.5:ENST00000508863.6:ENST00000515404.5:ENST00000522095.1:ENST00000506957.1:ENST00000523654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	3.73494	4.60806	5.48118	0.0189345	1.24248e-5	0.0934721	3.28918e-4
chr1	29033092	29033168	120752	0	+	0.421053	(0.42,0.455]	chr1	14642	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	4.20049	4.608055	5.01562	1.01971e-4	1.49765e-5	0.0019861	3.83096e-4
chr7	29030576	29030667	8744596	0	-	0.428571	(0.42,0.455]	chr7	667249	1	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	4.20049	4.608055	5.01562	1.01971e-4	1.49765e-5	0.0019861	3.83096e-4
chr18	46086112	46086184	17103813	0	-	0.486111	(0.455,0.49]	chr18	1404354	1	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000587902.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	86	2	4.39466	4.60799	4.82132	1.63946e-7	7.30591e-8	8.57024e-6	4.7318e-6
chr12	124807760	124807824	13600451	0	-	0.578125	(0.53,0.59]	chr12	1071710	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	3.2425	4.60751	5.97252	2.6381e-4	8.30115e-7	0.00427022	3.4056e-5
chr2	86471304	86471403	1927240	0	+	0.212121	[0,0.29]	chr2	181624	5	INTRON	INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000485171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.36183	4.6072500000000005	4.85267	0.00170062	2.14908e-4	0.01759	0.00332687
chr5	75355364	75355443	6037108	0	+	0.607595	(0.59,1]	chr5	473640	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000508070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	3.53997	4.60717	5.67437	9.75839e-5	6.83706e-5	0.00193292	0.00132577
chr11	61351001	61351101	12404386	0	-	0.6	(0.59,1]	chr11	960314	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000536452.1:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000540139.5:ENST00000542361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	4.34429	4.60703	4.86977	0.00246014	1.84713e-5	0.0230058	4.5469e-4
chr10	80512143	80512206	11151962	0	+	0.539683	(0.53,0.59]	chr10	847910	1	CDS	CDS:EXON_MRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.47419	4.60688	5.73957	8.75273e-4	3.90343e-6	0.0106963	1.26306e-4
chr15	73560295	73560389	15371778	0	-	0.287234	[0,0.29]	chr15	1214672	4	UTR3	UTR3:EXON_MRNA	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.45419	4.6067	4.75921	0.00133426	2.77035e-4	0.0139317	0.00444204
chr9	4728895	4728994	10538843	0	-	0.191919	[0,0.29]	chr9	799190	59	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.45419	4.6067	4.75921	0.00133426	2.77035e-4	0.0139317	0.00444204
chr7	105112481	105112575	8449882	0	+	0.489362	(0.455,0.49]	chr7	645366	8	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.12843	4.606615	6.0848	0.00392855	1.71103e-7	0.0322851	8.87341e-6
chr1	21880362	21880460	891283	0	-	0.622449	(0.59,1]	chr1	92555	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	4.13851	4.60652	5.07453	0.00117617	5.66622e-5	0.0132131	0.00114182
chr15	43768488	43768542	14896518	0	+	0.518519	(0.49,0.53]	chr15	1171302	1	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	151	2	3.86065	4.60627	5.35189	5.46336e-7	1.01215e-11	2.66561e-5	1.75856e-9
chr13	99547044	99547104	13865493	0	+	0.566667	(0.53,0.59]	chr13	1087201	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.87884	4.606175	5.33351	1.11478e-4	4.35359e-5	0.00213212	0.00091744700000000005
chr14	102044299	102044395	14495849	0	+	0.552083	(0.53,0.59]	chr14	1133260	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000646418.1:ENST00000642716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.87884	4.606175	5.33351	1.11478e-4	4.35359e-5	0.00213212	0.00091744700000000005
chr16	1771096	1771148	15822440	0	-	0.615385	(0.59,1]	chr16	1261530	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	NME3	ENSG00000103024.8	ENST00000219302.8:ENST00000564628.1:ENST00000561637.5:ENST00000567271.1:ENST00000568561.5:ENST00000563498.1:ENST00000566600.1:ENST00000563367.1:ENST00000565379.1:ENST00000563854.1:ENST00000564252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.01545	4.605965	5.19648	0.0251889	7.35336e-4	0.114168	0.00921643
chr15	82540425	82540428	15412572	0	-	0.333333	(0.33,0.36]	chr15	1218671	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	RPS17:RP11-152F13.10	ENSG00000182774.13:ENSG00000260836.2	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	2	49	2	4.12534	4.605945	5.08655	4.6453e-5	6.92433e-7	0.00106753	2.92467e-5
chr6	24976896	24976982	7095356	0	+	0.523256	(0.49,0.53]	chr6	542239	5	EXON_PSEUDO	EXON_PSEUDO	PPIAP29	ENSG00000214975.4	ENST00000414949.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	85	2	2.77942	4.605785	6.43215	5.88011e-5	1.33302e-8	0.00129475	9.93516e-7
chr12	7921213	7921312	13193175	0	-	0.434343	(0.42,0.455]	chr12	1033481	21	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	4.45249	4.60574	4.75899	2.45559e-6	2.77134e-7	9.39733e-5	1.3349e-5
chr14	20476442	20476501	14171376	0	+	0.440678	(0.42,0.455]	chr14	1109153	2	CDS	CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.8515	4.605735	5.35997	0.0119089	2.41298e-5	0.0686664	5.6648e-4
chr15	66379748	66379844	15352777	0	-	0.447917	(0.42,0.455]	chr15	1212508	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	TIPIN:RPL9P25	ENSG00000075131.10:ENSG00000240821.1	ENST00000562124.5:ENST00000568216.5:ENST00000570251.1:ENST00000561773.1:ENST00000489563.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	0	26	2	3.8515	4.605735	5.35997	0.0119089	2.41298e-5	0.0686664	5.6648e-4
chr2	221962798	221962895	2403286	0	+	0.443299	(0.42,0.455]	chr2	216413	12	EXON_PSEUDO	EXON_PSEUDO	HSPA9P1	ENSG00000226666.1	ENST00000432228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	3.8515	4.605735	5.35997	0.0119089	2.41298e-5	0.0686664	5.6648e-4
chr11	81951621	81951721	12491343	0	-	0.51	(0.49,0.53]	chr11	971326	604	INTRON	INTRON	MIR4300HG	ENSG00000245832.7	ENST00000659248.1:ENST00000653173.1:ENST00000667990.1:ENST00000671244.1:ENST00000500502.5:ENST00000530896.6:ENST00000655084.1:ENST00000666803.1	lncRNA	lncRNA	lncRNA	lncRNA	3	107	2	4.20376	4.605449999999999	5.00714	1.43152e-5	3.25707e-10	4.04062e-4	3.88482e-8
chr15	21709648	21709736	15157781	0	-	0.5	(0.49,0.53]	chr15	1192463	1	EXON_PSEUDO	EXON_PSEUDO	RP11-983G14.3	ENSG00000281087.1	ENST00000625294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	45	2	4.41931	4.605085000000001	4.79086	4.20783e-4	3.4941e-6	0.00611538	1.14163e-4
chr16	21983293	21983385	15587033	0	+	0.304348	(0.29,0.33]	chr16	1235489	2	UTR3	UTR3:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000561798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.48001	4.6050450000000005	5.73008	0.00126219	1.12475e-6	0.013837	4.41253e-5
chr11	82689558	82689628	12039466	0	+	0.628571	(0.59,1]	chr11	928339	1	EXON_PSEUDO	EXON_PSEUDO	RPS28P7	ENSG00000227097.5	ENST00000473748.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	68	2	4.20036	4.6049050000000005	5.00945	0.00149725	4.07557e-5	0.0159607	8.75066e-4
chr3	128066953	128067052	3725157	0	+	0.555556	(0.53,0.59]	chr3	318499	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	235	2	4.384	4.60435	4.8247	1.10412e-7	2.90878e-12	6.85761e-6	5.85249e-10
chr16	2253212	2253310	15825197	0	-	0.27551	[0,0.29]	chr16	1262340	2	UTR3	UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.11257	4.604345	6.09612	0.00120521	5.83277e-8	0.0134827	3.51156e-6
chr21	14373905	14374000	18163693	0	-	0.357895	(0.33,0.36]	chr21	1542399	3	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.46908	4.60429	5.7395	0.00114872	1.26833e-6	0.0130528	4.89488e-5
chr22	37863271	37863345	18364530	0	+	0.513514	(0.49,0.53]	chr22	1562178	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1:ENST00000464790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	99	2	3.14882	4.60398	6.05914	1.9498e-6	1.86307e-7	7.00948e-5	1.07114e-5
chr3	128495012	128495111	3727952	0	+	0.444444	(0.42,0.455]	chr3	318583	46	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	3.71365	4.603965	5.49428	2.63375e-4	1.07978e-5	0.00427022	2.9314e-4
chr1	151265393	151265465	471374	0	+	0.458333	(0.455,0.49]	chr1	48098	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5:ENST00000445776.1:ENST00000491857.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.8036	4.60365	5.4037	1.59194e-4	1.20695e-5	0.00263091	3.52389e-4
chr6	26045580	26045650	7100999	0	+	0.614286	(0.59,1]	chr6	542753	2	CDS	CDS:EXON_MRNA	H3C3	ENSG00000287080.2	ENST00000612966.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.36223	4.603555	5.84488	0.00203572	4.10826e-5	0.0192213	9.68079e-4
chr14	22575058	22575102	14526013	0	-	0.295455	(0.29,0.33]	chr14	1137869	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000489532.6:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	4.24387	4.603400000000001	4.96293	0.00263476	4.06577e-8	0.0239118	2.58327e-6
chr5	150444187	150444285	6914261	0	-	0.377551	(0.36,0.39]	chr5	529147	17	UTR3	UTR3:EXON_MRNA	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	4.47321	4.6033349999999995	4.73346	3.2963e-4	3.79566e-8	0.00504024	2.43471e-6
chr10	18621989	18622089	11401532	0	-	0.32	(0.29,0.33]	chr10	869301	53	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.2566	4.603325	4.95005	0.00303129	9.78718e-5	0.0257942	0.0019344
chr1	11950356	11950438	45236	0	+	0.621951	(0.59,1]	chr1	5725	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	100	2	2.94263	4.6028	6.26297	4.44672e-4	4.52763e-6	0.00598735	1.57276e-4
chr4	73085248	73085347	5466062	0	-	0.50505	(0.49,0.53]	chr4	437748	1	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	4.1249	4.602755	5.08061	1.00361e-4	2.4461e-5	0.00196575	5.72214e-4
chrX	79363040	79363139	19130536	0	-	0.494949	(0.49,0.53]	chrX	1627063	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2A	ENSG00000078596.11	ENST00000373298.7:ENST00000434584.2:ENST00000469541.5:ENST00000482194.1:ENST00000462038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	4.1249	4.602755	5.08061	1.00361e-4	2.4461e-5	0.00196575	5.72214e-4
chr1	668494	668594	823716	0	-	0.56	(0.53,0.59]	chr1	81486	355	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	25	2	4.43279	4.602505	4.77222	0.0026472	6.67251e-4	0.0231864	0.00867533
chr15	63609080	63609180	15334995	0	-	0.55	(0.53,0.59]	chr15	1210247	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.43279	4.602505	4.77222	0.0026472	6.67251e-4	0.0231864	0.00867533
chr17	7502517	7502609	16105183	0	+	0.565217	(0.53,0.59]	chr17	1296750	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000576114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.43863	4.60248	4.76633	0.00254763	6.98999e-4	0.0233955	0.00846751
chr17	16428899	16428982	16141965	0	+	0.542169	(0.53,0.59]	chr17	1300714	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.43863	4.60248	4.76633	0.00254763	6.98999e-4	0.0233955	0.00846751
chr2	64665789	64665880	1852906	0	+	0.582418	(0.53,0.59]	chr2	175790	3	EXON_PSEUDO	EXON_PSEUDO	RPS10P9	ENSG00000227791.3	ENST00000428806.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	4.43863	4.60248	4.76633	0.00254763	6.98999e-4	0.0233955	0.00846751
chr3	129394673	129394768	4444213	0	-	0.578947	(0.53,0.59]	chr3	369367	5	INTRON	INTRON	RPL32P3	ENSG00000251474.6	ENST00000510078.5:ENST00000507287.5:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	25	2	4.43863	4.60248	4.76633	0.00254763	6.98999e-4	0.0233955	0.00846751
chr6	31782529	31782581	7662439	0	-	0.576923	(0.53,0.59]	chr6	585289	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1:ENST00000474643.5:ENST00000461328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.43863	4.60248	4.76633	0.00254763	6.98999e-4	0.0233955	0.00846751
chr20	52354721	52354821	17819726	0	+	0.47	(0.455,0.49]	chr20	1507357	80	INTRON	INTRON	LINC01524	ENSG00000234948.2	ENST00000656056.1:ENST00000667866.1:ENST00000659137.1:ENST00000656367.1:ENST00000657861.1:ENST00000655649.1:ENST00000658665.1:ENST00000653220.1:ENST00000666751.1:ENST00000662183.1:ENST00000656501.1:ENST00000663974.1:ENST00000666722.1:ENST00000663247.1:ENST00000663351.1:ENST00000655981.1:ENST00000669837.1:ENST00000655588.1:ENST00000662344.1:ENST00000667358.1:ENST00000454600.1:ENST00000662569.1:ENST00000661784.1:ENST00000666356.1:ENST00000656362.1:ENST00000660314.1:ENST00000661039.1:ENST00000660723.1:ENST00000665325.1:ENST00000655073.1:ENST00000669578.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	3.59437	4.60246	5.61055	3.2026e-5	3.16146e-6	7.10499e-4	1.16228e-4
chr19	8303973	8304030	17449512	0	-	0.596491	(0.59,1]	chr19	1458577	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CD320	ENSG00000167775.11	ENST00000301458.10:ENST00000537716.6:ENST00000596002.5:ENST00000599573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.26354	4.60242	4.9413	0.0134233	0.00191468	0.0743429	0.0190905
chr13	99543928	99543995	13865461	0	+	0.41791	(0.39,0.42]	chr13	1087195	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	4.20029	4.6021	5.00391	9.12714e-5	1.46608e-5	0.00182992	3.77398e-4
chr19	12943536	12943559	17238395	0	+	0.478261	(0.455,0.49]	chr19	1421064	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6:ENST00000586803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	325	2	4.03813	4.601929999999999	5.16573	1.76084e-8	1e-12	1.37698e-6	2.25522e-10
chr19	46777041	46777109	17595477	0	-	0.705882	(0.59,1]	chr19	1481390	2	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	7	367	2	4.41359	4.60165	4.78971	1.62277e-8	3.06679e-9	1.28781e-6	2.79214e-7
chr7	128848638	128848717	8522446	0	+	0.64557	(0.59,1]	chr7	650405	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.54183	4.6007549999999995	4.65968	0.0070583	0.00413632	0.0478044	0.0324998
chr18	56638539	56638639	17136535	0	-	0.71	(0.59,1]	chr18	1406974	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000587613.1:ENST00000589329.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.57037	4.600714999999999	4.63106	0.0054994	0.00537945	0.0406564	0.0402071
chr19	8302912	8302980	17449498	0	-	0.617647	(0.59,1]	chr19	1458569	3	CDS	CDS:UTR3:EXON_MRNA	CD320	ENSG00000167775.11	ENST00000301458.10:ENST00000537716.6:ENST00000596002.5:ENST00000599573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.57037	4.600714999999999	4.63106	0.0054994	0.00537945	0.0406564	0.0402071
chr6	41932442	41932524	7150480	0	+	0.597561	(0.59,1]	chr6	551700	2	CDS	CDS:UTR3:EXON_MRNA	BYSL	ENSG00000112578.10	ENST00000230340.9:ENST00000489290.1:ENST00000372996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.57037	4.600714999999999	4.63106	0.0054994	0.00537945	0.0406564	0.0402071
chr9	131260330	131260428	10870360	0	-	0.602041	(0.59,1]	chr9	824566	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.57037	4.600714999999999	4.63106	0.0054994	0.00537945	0.0406564	0.0402071
chr17	80136281	80136335	16704242	0	-	0.555556	(0.53,0.59]	chr17	1376647	2	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000570625.5:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.62204	4.600675000000001	5.57931	4.3021e-4	1.05602e-5	0.00620274	2.89015e-4
chrX	77830804	77830895	19128998	0	-	0.362637	(0.36,0.39]	chrX	1626862	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.69835	4.60065	5.50295	3.2708e-4	7.4907e-6	0.00502339	2.17853e-4
chr4	67509205	67509305	5452196	0	-	0.37	(0.36,0.39]	chr4	435965	1	SS3_PROX	SS3_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	4.21361	4.6005199999999995	4.98743	8.82225e-5	1.31698e-5	0.00178337	3.45454e-4
chr7	90412865	90412954	8384973	0	+	0.550562	(0.53,0.59]	chr7	638936	2	CDS	CDS:EXON_MRNA:INTRON	CLDN12:CTB-13L3.1	ENSG00000157224.16:ENSG00000273299.1	ENST00000416322.5:ENST00000287916.8:ENST00000480135.1:ENST00000394604.5:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000427904.1:ENST00000451941.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	26	2	4.15805	4.600515	5.04298	0.00680952	1.91383e-4	0.0468196	0.0032874
chr1	19167091	19167161	876620	0	-	0.542857	(0.53,0.59]	chr1	90275	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.16383	4.60044	5.03705	0.00659193	0.00020199200000000001	0.0454205	0.00317801
chr11	65124576	65124652	11982523	0	+	0.565789	(0.53,0.59]	chr11	919911	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL49	ENSG00000149792.9	ENST00000524482.5:ENST00000528529.1:ENST00000534078.1:ENST00000526319.5:ENST00000279242.7:ENST00000526171.5:ENST00000531705.1:ENST00000533943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	4.16383	4.60044	5.03705	0.00659193	0.00020199200000000001	0.0454205	0.00317801
chr17	7260373	7260473	16429304	0	-	0.54	(0.53,0.59]	chr17	1339385	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP1-4G17.5:CLDN7	ENSG00000262302.1:ENSG00000181885.18	ENST00000577138.1:ENST00000360325.11:ENST00000538261.7:ENST00000397317.8:ENST00000574070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.16383	4.60044	5.03705	0.00659193	0.00020199200000000001	0.0454205	0.00317801
chr20	32210131	32210192	17752678	0	+	0.540984	(0.53,0.59]	chr20	1498550	2	CDS	CDS:EXON_MRNA:INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000375730.3:ENST00000486717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.16383	4.60044	5.03705	0.00659193	0.00020199200000000001	0.0454205	0.00317801
chr7	90413043	90413132	8384975	0	+	0.550562	(0.53,0.59]	chr7	638936	4	CDS	CDS:EXON_MRNA:INTRON	CLDN12:CTB-13L3.1	ENSG00000157224.16:ENSG00000273299.1	ENST00000416322.5:ENST00000287916.8:ENST00000480135.1:ENST00000394604.5:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000427904.1:ENST00000451941.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	26	2	4.16383	4.60044	5.03705	0.00659193	0.00020199200000000001	0.0454205	0.00317801
chr1	30938895	30938992	916345	0	-	0.360825	(0.36,0.39]	chr1	95968	17	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1:ENST00000529846.5:ENST00000525997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.46714	4.6003	4.73346	0.00155822	3.2963e-4	0.0156889	0.00504024
chr15	88905828	88905901	15434353	0	-	0.520548	(0.49,0.53]	chr15	1220407	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000542878.5:ENST00000558029.5:ENST00000613965.1:ENST00000559259.1:ENST00000559997.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	120	2	3.36911	4.60029	5.83147	2.16178e-5	1.83316e-11	5.71712e-4	2.99137e-9
chr2	131148560	131148660	2065744	0	+	0.53	(0.49,0.53]	chr2	194095	19	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.42954	4.60009	5.77064	0.00105489	1.94063e-6	0.0123035	6.9799e-5
chr1	112914165	112914265	1232318	0	-	0.33	(0.29,0.33]	chr1	120458	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	4.24933	4.59969	4.95005	9.78718e-5	1.02924e-5	0.0019344	2.83837e-4
chr12	34026338	34026433	12822290	0	+	0.336842	(0.33,0.36]	chr12	995601	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.51378	4.59969	4.6856	0.00118147	3.92435e-4	0.0127276	0.00583618
chr3	185418185	185418284	4625651	0	-	0.424242	(0.42,0.455]	chr3	382004	8	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	94	2	3.68196	4.599575	5.51719	1.87505e-5	3.76325e-10	5.08634e-4	4.41173e-8
chr1	155330842	155330933	483800	0	+	0.450549	(0.42,0.455]	chr1	50857	4	UTR3	UTR3:EXON_MRNA	RUSC1	ENSG00000160753.16	ENST00000368352.10:ENST00000368354.7:ENST00000368347.8:ENST00000368349.8:ENST00000471876.5:ENST00000292254.8	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.24133	4.598965	4.9566	0.00326918	2.10615e-4	0.0282494	0.00327655
chr5	37301436	37301493	6540047	0	-	0.438596	(0.42,0.455]	chr5	506523	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1:ENST00000515054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.24133	4.598965	4.9566	0.00326918	2.10615e-4	0.0282494	0.00327655
chr2	15621064	15621116	1650904	0	+	0.403846	(0.39,0.42]	chr2	162958	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	4.3053	4.598739999999999	4.89218	1.6518e-4	7.30538e-6	0.0029267300000000002	2.13219e-4
chr20	49952142	49952242	17814638	0	+	0.42	(0.39,0.42]	chr20	1506967	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	4.3053	4.598739999999999	4.89218	1.6518e-4	7.30538e-6	0.0029267300000000002	2.13219e-4
chr12	120212313	120212413	13579803	0	-	0.53	(0.49,0.53]	chr12	1068825	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9:ENST00000538144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.9516	4.598695	5.24579	6.96459e-5	4.073e-5	0.0013446	9.64741e-4
chr21	18857778	18857877	18064948	0	+	0.585859	(0.53,0.59]	chr21	1532462	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP22	ENSG00000198618.5	ENST00000358455.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	219	2	4.19167	4.598575	5.00548	6.88301e-9	2.14373e-11	5.61065e-7	3.78822e-9
chr1	11923005	11923101	861982	0	-	0.583333	(0.53,0.59]	chr1	87466	5	CDS	CDS:EXON_MRNA	KIAA2013	ENSG00000116685.16	ENST00000376572.8:ENST00000616327.1:ENST00000376576.3	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.00393	4.598405	5.19288	0.0108084	9.22873e-5	0.064368	0.0016906
chr1	212078172	212078262	701461	0	+	0.544444	(0.53,0.59]	chr1	71161	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	DTL:MIR3122	ENSG00000143476.18:ENSG00000264358.1	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1:ENST00000577243.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	0	27	2	4.00393	4.598405	5.19288	0.0108084	9.22873e-5	0.064368	0.0016906
chr10	70738841	70738915	11102127	0	+	0.581081	(0.53,0.59]	chr10	844512	1	CDS	CDS:EXON_MRNA	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.00393	4.598405	5.19288	0.0108084	9.22873e-5	0.064368	0.0016906
chr18	61874704	61874804	17150524	0	-	0.38	(0.36,0.39]	chr18	1407876	578	INTRON	INTRON	RNF152	ENSG00000176641.11	ENST00000312828.4:ENST00000591306.5	protein_coding	protein_coding	protein_coding	protein_coding	9	206	2	3.57229	4.5983600000000004	5.62443	1.17367e-7	1e-12	7.21445e-6	2.25522e-10
chr10	87784536	87784603	11608182	0	-	0.432836	(0.42,0.455]	chr10	884054	2	CDS	CDS:UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1:ENST00000495903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.31161	4.598345	5.88508	0.00186138	8.1674e-7	0.018635	3.36299e-5
chr8	18059637	18059703	9732832	0	-	0.424242	(0.42,0.455]	chr8	736297	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000521542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	4.50269	4.59831	4.69393	3.8764e-7	3.28914e-8	1.99378e-5	2.15659e-6
chr17	41762982	41763066	16543062	0	-	0.583333	(0.53,0.59]	chr17	1356285	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000585793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.92573	4.5983	5.27087	8.62301e-5	5.9416e-5	0.00160749	0.00130151
chr2	219213589	219213666	3191193	0	-	0.493506	(0.49,0.53]	chr2	280812	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000494639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.23006	4.5983	5.96654	0.00253719	4.9393e-7	0.0233955	2.18407e-5
chr13	97465937	97466037	13858358	0	+	0.4	(0.39,0.42]	chr13	1086544	16	UTR3	UTR3:EXON_MRNA	RAP2A	ENSG00000125249.7	ENST00000245304.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.55723	4.59803	4.63883	0.00117753	5.68159e-4	0.0127276	0.0077844
chr7	103367479	103367547	8441709	0	+	0.411765	(0.39,0.42]	chr7	645118	2	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.55723	4.59803	4.63883	0.00117753	5.68159e-4	0.0127276	0.0077844
chr2	219224105	219224198	3191329	0	-	0.548387	(0.53,0.59]	chr2	280883	1	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.47	4.598005	6.72601	0.0089333	2.47831e-9	0.0567495	2.32242e-7
chr19	17403794	17403824	17495793	0	-	0.4	(0.39,0.42]	chr19	1467248	1	CDS	CDS:UTR3:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2:ENST00000533098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.23057	4.5979600000000005	5.96535	3.34829e-4	3.80804e-7	0.00509483	1.7481e-5
chr16	18784733	18784823	15876980	0	-	0.488889	(0.455,0.49]	chr16	1269268	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS15A	ENSG00000134419.15	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000575669.1:ENST00000565420.5:ENST00000563579.1:ENST00000569083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	252	2	4.30226	4.5973500000000005	4.89244	2.67024e-11	1.29936e-11	4.61325e-9	2.19315e-9
chr2	189563858	189563949	3082422	0	-	0.450549	(0.42,0.455]	chr2	272317	4	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.54792	4.59708	4.64624	9.66045e-4	8.75333e-4	0.0115185	0.0101169
chr5	115616417	115616445	6777011	0	-	0.428571	(0.42,0.455]	chr5	519917	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.54792	4.59708	4.64624	9.66045e-4	8.75333e-4	0.0115185	0.0101169
chr16	70779003	70779101	16000152	0	-	0.581633	(0.53,0.59]	chr16	1285066	65	INTRON	INTRON	VAC14	ENSG00000103043.15	ENST00000261776.10:ENST00000568886.5:ENST00000568548.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	117	3363	2	4.02739	4.597045	5.1667	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	35061014	35061096	10638109	0	-	0.47561	(0.455,0.49]	chr9	804516	1	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.56037	4.596845	5.63332	5.72551e-4	4.15159e-6	0.0078026	1.32627e-4
chr9	137108491	137108582	10514750	0	+	0.56044	(0.53,0.59]	chr9	797011	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2:ENST00000683529.1:ENST00000550113.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.30943	4.596615	5.8838	0.0018255	1.51824e-6	0.0183913	5.67784e-5
chrX	138632351	138632450	19251287	0	-	0.343434	(0.33,0.36]	chrX	1635533	178	UTR3	UTR3:EXON_MRNA	FGF13	ENSG00000129682.16	ENST00000315930.11:ENST00000305414.8:ENST00000441825.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.93997	4.596525	5.25308	9.37165e-5	2.94355e-5	0.00186979	6.67979e-4
chr15	64137702	64137787	14975005	0	+	0.517647	(0.49,0.53]	chr15	1177125	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SNX1	ENSG00000028528.15	ENST00000560829.5:ENST00000559844.6:ENST00000380285.7:ENST00000261889.9:ENST00000558040.5:ENST00000560861.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.51312	4.59642	4.67972	0.00156636	6.94757e-4	0.0156889	0.00876781
chr19	4838434	4838529	17434005	0	-	0.526316	(0.49,0.53]	chr19	1455546	2	UTR3	UTR3:EXON_MRNA	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000589163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.51312	4.59642	4.67972	0.00156636	6.94757e-4	0.0156889	0.00876781
chr12	4098927	4099026	12704120	0	+	0.494949	(0.49,0.53]	chr12	985492	16	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr12	53253607	53253703	12885412	0	+	0.520833	(0.49,0.53]	chr12	1002106	8	CDS	CDS:EXON_MRNA	MFSD5	ENSG00000182544.9	ENST00000534842.1:ENST00000551660.2:ENST00000329548.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr19	4493009	4493105	17206797	0	+	0.5	(0.49,0.53]	chr19	1414889	8	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr19	51064653	51064730	17613197	0	-	0.519481	(0.49,0.53]	chr19	1485695	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	KLK13	ENSG00000167759.13	ENST00000595793.6:ENST00000156476.6:ENST00000602090.5:ENST00000441527.6:ENST00000601975.5:ENST00000376799.9:ENST00000595547.5:ENST00000335422.3:ENST00000596955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr2	74872359	74872419	1893227	0	+	0.516667	(0.49,0.53]	chr2	179570	2	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr3	8737272	8737372	3296016	0	+	0.53	(0.49,0.53]	chr3	289270	29	INTRON	INTRON	CAV3	ENSG00000182533.7	ENST00000343849.3:ENST00000472766.1:ENST00000397368.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr6	11735625	11735683	7602193	0	-	0.5	(0.49,0.53]	chr6	579798	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADTRP	ENSG00000111863.13	ENST00000505099.5:ENST00000414691.8:ENST00000514824.5:ENST00000512139.5:ENST00000229583.9:ENST00000503285.1:ENST00000379415.6:ENST00000506810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr8	23191939	23192013	9756632	0	-	0.513514	(0.49,0.53]	chr8	737615	3	CDS	CDS:EXON_MRNA	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1:ENST00000519862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr9	125240829	125240907	10856274	0	-	0.628205	(0.59,1]	chr9	822393	3	CDS	CDS:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	963	2	3.61108	4.596335	5.58159	8.95751e-8	1e-12	5.68342e-6	2.25522e-10
chrX	37728271	37728362	18656812	0	+	0.527473	(0.49,0.53]	chrX	1591367	8	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.55929	4.596335	4.63338	0.00116196	9.56909e-4	0.0130851	0.010724
chr5	177065893	177065993	6404782	0	+	0.46	(0.455,0.49]	chr5	497766	14	UTR3	UTR3:EXON_MRNA:INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000511834.5:ENST00000503039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.81624	4.596165	5.37609	1.48205e-4	2.05373e-5	0.00269793	4.97369e-4
chr1	61723712	61723760	1065159	0	-	0.4375	(0.42,0.455]	chr1	108836	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.05954	4.5956150000000004	5.13169	0.00617886	8.60227e-5	0.0439741	0.00160731
chr8	124486789	124486884	9593375	0	+	0.4	(0.39,0.42]	chr8	727739	8	CDS	CDS:EXON_MRNA	RNF139	ENSG00000170881.5	ENST00000303545.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.66467	4.595465	5.52626	3.60066e-4	7.67816e-6	0.00544157	2.20857e-4
chr10	73769346	73769415	11115856	0	+	0.608696	(0.59,1]	chr10	845914	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000496827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.44671	4.595245	4.74378	0.00931497	0.00312942	0.0586162	0.0264364
chr21	46161224	46161301	18280630	0	-	0.805195	(0.59,1]	chr21	1550786	2	UTR3	UTR3:EXON_MRNA	SPATC1L	ENSG00000160284.15	ENST00000330205.10:ENST00000291672.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.44671	4.595245	4.74378	0.00931497	0.00312942	0.0586162	0.0264364
chr4	2932350	2932431	5284972	0	-	0.604938	(0.59,1]	chr4	425647	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MFSD10	ENSG00000109736.15	ENST00000514800.5:ENST00000355443.9:ENST00000329687.8:ENST00000503596.5:ENST00000508221.5:ENST00000507272.5:ENST00000507555.1:ENST00000512781.5:ENST00000509676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.44671	4.595245	4.74378	0.00931497	0.00312942	0.0586162	0.0264364
chr9	35676134	35676206	10246558	0	+	0.680556	(0.59,1]	chr9	770805	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CA9	ENSG00000107159.13	ENST00000617161.1:ENST00000378357.9:ENST00000493245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.44671	4.595245	4.74378	0.00931497	0.00312942	0.0586162	0.0264364
chr12	94994169	94994257	13478065	0	-	0.465909	(0.455,0.49]	chr12	1059753	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000538372.7:ENST00000547986.5:ENST00000546788.1:ENST00000550187.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	4.1185600000000004	4.595140000000001	5.07172	8.3067e-5	2.49433e-5	0.00171126	5.8178e-4
chr1	12138282	12138382	46819	0	+	0.72	(0.59,1]	chr1	6064	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5:ENST00000413146.6:ENST00000479933.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.47517	4.595135	4.7151	0.00735659	0.00412279	0.0491503	0.0325842
chrX	48905222	48905309	19063524	0	-	0.62069	(0.59,1]	chrX	1620558	4	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7:ENST00000446885.1:ENST00000635238.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.47517	4.595135	4.7151	0.00735659	0.00412279	0.0491503	0.0325842
chr10	92351896	92351994	11191367	0	+	0.44898	(0.42,0.455]	chr10	850966	8	UTR3	UTR3:EXON_MRNA	MARCHF5	ENSG00000198060.10	ENST00000358935.3	protein_coding	protein_coding	protein_coding	protein_coding	4	102	2	3.78199	4.594915	5.40784	1.02596e-6	1.05542e-9	4.51911e-5	1.10014e-7
chr22	19968535	19968585	18296522	0	+	0.58	(0.53,0.59]	chr22	1553020	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.8188	4.594915	5.37103	1.54941e-4	2.29476e-9	0.0028049	2.17437e-7
chr15	38694203	38694302	14872656	0	+	0.535354	(0.53,0.59]	chr15	1167636	45	INTRON	INTRON	LINC02694	ENSG00000175779.4	ENST00000647456.1:ENST00000644461.1:ENST00000646232.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	2.515	4.594525	6.67405	0.0292633	3.84457e-9	0.129773	3.39055e-7
chr1	27906984	27907041	910930	0	-	0.45614	(0.455,0.49]	chr1	95253	2	CDS	CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.81275	4.5944199999999995	5.37609	0.0138827	2.05373e-5	0.0760883	4.97369e-4
chr2	26315867	26315943	2566293	0	-	0.486842	(0.455,0.49]	chr2	230694	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADGRF3	ENSG00000173567.15	ENST00000459892.5:ENST00000651242.1:ENST00000435303.1:ENST00000333478.10:ENST00000447444.5:ENST00000421160.6:ENST00000311519.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	26	2	3.81275	4.5944199999999995	5.37609	0.0138827	2.05373e-5	0.0760883	4.97369e-4
chr3	184302001	184302071	3949015	0	+	0.457143	(0.455,0.49]	chr3	332303	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD2	ENSG00000175166.17	ENST00000417952.5:ENST00000487475.5:ENST00000310118.9:ENST00000433010.5:ENST00000445558.6:ENST00000439383.5:ENST00000435761.5:ENST00000463602.1:ENST00000485937.1:ENST00000491149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.81275	4.5944199999999995	5.37609	0.0138827	2.05373e-5	0.0760883	4.97369e-4
chr6	154830994	154831067	7502018	0	+	0.465753	(0.455,0.49]	chr6	572929	2	CDS	CDS:EXON_MRNA	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.81275	4.5944199999999995	5.37609	0.0138827	2.05373e-5	0.0760883	4.97369e-4
chr12	21641951	21642038	13236673	0	-	0.494253	(0.49,0.53]	chr12	1037962	1	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	319	2	3.96512	4.59435	5.22358	1.01884e-9	1e-12	1.16288e-7	2.25522e-10
chr1	52020397	52020486	1018055	0	-	0.370787	(0.36,0.39]	chr1	105390	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	4.32265	4.594340000000001	4.86603	1.68962e-4	6.3224e-6	0.00297945	1.88366e-4
chr5	62388618	62388716	6611629	0	-	0.326531	(0.29,0.33]	chr5	511030	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000514605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	80	2	4.32584	4.594110000000001	4.86238	1.31052e-7	8.22086e-9	7.91818e-6	6.55418e-7
chr1	201146739	201146804	1446613	0	-	0.630769	(0.59,1]	chr1	145203	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	83	2	3.27003	4.5938300000000005	5.91763	3.45884e-4	2.85329e-5	0.00486309	7.16403e-4
chr19	9683585	9683683	17455331	0	-	0.428571	(0.42,0.455]	chr19	1459858	4	EXON_PSEUDO	EXON_PSEUDO	RPS4XP22	ENSG00000239830.1	ENST00000480755.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	101	2	3.35528	4.59382	5.83236	5.6476e-7	3.41743e-7	2.73442e-5	1.60231e-5
chr7	107160551	107160648	8455224	0	+	0.43299	(0.42,0.455]	chr7	645853	11	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	9	221	2	4.52832	4.593665	4.65901	2.94227e-10	9.0975e-12	3.91689e-8	1.59816e-9
chr9	94446822	94446879	10367658	0	+	0.368421	(0.36,0.39]	chr9	780561	1	CDS	CDS:UTR5:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.58747	4.593085	4.5987	9.0208e-4	6.55819e-4	0.0102618	0.00860229
chr10	59688323	59688423	11516502	0	-	0.34	(0.33,0.36]	chr10	877674	36	INTRON	INTRON	SLC16A9	ENSG00000165449.12	ENST00000395348.8:ENST00000395347.1:ENST00000490066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	4.33896	4.59269	4.84642	0.00182033	1.14635e-7	0.0183913	6.29236e-6
chr22	30977920	30978019	18344866	0	+	0.454545	(0.42,0.455]	chr22	1559168	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	3.20518	4.59245	5.97972	6.88593e-5	4.13864e-7	0.00146004	1.88179e-5
chr1	196679707	196679793	640876	0	+	0.430233	(0.42,0.455]	chr1	64445	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.70611	4.59215	6.47819	0.00397496	8.14533e-9	0.0322851	6.49842e-7
chr1	160352886	160352938	496748	0	+	0.461538	(0.455,0.49]	chr1	53475	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	4.42349	4.591985	4.76048	3.99985e-4	3.27827e-6	0.00588767	1.08637e-4
chr1	180178793	180178849	582723	0	+	0.464286	(0.455,0.49]	chr1	60537	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	4.42349	4.591985	4.76048	3.99985e-4	3.27827e-6	0.00588767	1.08637e-4
chr15	78661134	78661222	15397339	0	-	0.602273	(0.59,1]	chr15	1217413	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	CHRNB4:RPL18P11	ENSG00000117971.12:ENSG00000213307.4	ENST00000560511.5:ENST00000494933.1	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	0	35	2	3.84557	4.591785	5.338	0.0410704	3.196e-4	0.163285	0.00457916
chr9	137279471	137279568	10515665	0	+	0.670103	(0.59,1]	chr9	797347	8	CDS	CDS:EXON_MRNA	TOR4A	ENSG00000198113.3	ENST00000357503.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	3.84557	4.591785	5.338	0.0410704	3.196e-4	0.163285	0.00457916
chrX	71240716	71240815	19106940	0	-	0.565657	(0.53,0.59]	chrX	1625381	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.39416	4.591715	5.78927	0.00126006	2.83401e-6	0.013837	9.62519e-5
chr12	49272543	49272640	12865713	0	+	0.463918	(0.455,0.49]	chr12	999063	4	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	905	2	4.53246	4.59155	4.65064	1e-12	1e-12	2.46312e-10	2.25522e-10
chr14	55063236	55063325	14298030	0	+	0.561798	(0.53,0.59]	chr14	1117542	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1:ENST00000553976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.84214	4.59081	5.33948	4.08763e-5	6.5494e-6	9.64741e-4	1.94116e-4
chr1	201007477	201007576	1445392	0	-	0.474747	(0.455,0.49]	chr1	144921	14	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.54174	4.5907599999999995	4.63978	0.00130137	6.94032e-4	0.0136936	0.00876781
chr11	71990596	71990656	12010036	0	+	0.466667	(0.455,0.49]	chr11	925324	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNF121	ENSG00000137522.18	ENST00000530058.5:ENST00000530655.5:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000528683.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1:ENST00000525176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.54174	4.5907599999999995	4.63978	0.00130137	6.94032e-4	0.0136936	0.00876781
chr15	93876633	93876727	15121009	0	+	0.478723	(0.455,0.49]	chr15	1189801	12	INTRON	INTRON	LINC02207	ENSG00000258476.6	ENST00000663183.1:ENST00000659318.1:ENST00000661477.1:ENST00000662634.1:ENST00000653089.1:ENST00000670913.1:ENST00000669877.1:ENST00000663747.1:ENST00000653271.1:ENST00000653987.1:ENST00000655344.1:ENST00000668413.1:ENST00000657633.1:ENST00000656752.1:ENST00000664216.1:ENST00000655821.1:ENST00000669081.1:ENST00000664456.1:ENST00000661341.1:ENST00000669391.1:ENST00000555281.2:ENST00000666582.1:ENST00000669599.1:ENST00000656375.1:ENST00000665888.1:ENST00000666819.1:ENST00000657833.1:ENST00000664063.1:ENST00000653939.1:ENST00000664215.1:ENST00000554530.5:ENST00000657503.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.54174	4.5907599999999995	4.63978	0.00130137	6.94032e-4	0.0136936	0.00876781
chr12	49992252	49992352	13327204	0	-	0.5	(0.49,0.53]	chr12	1046323	1	CDS_START	CDS_START:CDS:EXON_MRNA	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.16986	4.59074	6.01162	3.95698e-4	3.55916e-7	0.00587341	1.64926e-5
chr11	61325610	61325708	12404169	0	-	0.510204	(0.49,0.53]	chr11	960251	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000541513.2:ENST00000543162.2:ENST00000537120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	4.30878	4.590705	4.87263	7.12421e-6	1.15551e-7	2.28404e-4	6.3314e-6
chr1	150968082	150968141	1291397	0	-	0.644068	(0.59,1]	chr1	128696	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000559660.1:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	95	2	3.9849	4.59069	5.19648	7.35336e-4	6.78787e-6	0.00921643	2.00658e-4
chr1	179964801	179964901	580926	0	+	0.29	[0,0.29]	chr1	60272	93	INTRON	INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.1103	4.590375	5.07045	0.00493104	5.08054e-5	0.0366648	0.00114377
chr3	43432668	43432727	4144207	0	-	0.457627	(0.455,0.49]	chr3	346415	2	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.73589	4.590355	5.44482	2.30579e-4	1.36044e-5	0.00382267	3.54469e-4
chrX	48466014	48466093	19062818	0	-	0.544304	(0.53,0.59]	chrX	1620417	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5:ENST00000429543.2:ENST00000488083.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	104	2	4.34742	4.590249999999999	4.83308	1.94849e-7	1.5084e-7	1.11133e-5	7.98925e-6
chr21	5116911	5117006	18153556	0	-	0.505263	(0.49,0.53]	chr21	1541053	7	UTR3	UTR3:EXON_MRNA:INTRON	GATD3B:CH507-9B2.4	ENSG00000280071.4:ENSG00000276612.3	ENST00000624810.3:ENST00000625036.3:ENST00000620528.5:ENST00000620015.4:ENST00000623476.2:ENST00000624120.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.83319	4.590045	5.3469	1.34601e-4	2.75121e-5	0.00249552	6.30607e-4
chrX	9568441	9568541	18567781	0	+	0.5	(0.49,0.53]	chrX	1586476	75	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.83319	4.590045	5.3469	1.34601e-4	2.75121e-5	0.00249552	6.30607e-4
chr2	216122157	216122253	2379868	0	+	0.34375	(0.33,0.36]	chr2	213780	2	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	3.68896	4.589945	5.49093	3.50796e-6	4.05477e-7	1.26658e-4	1.85234e-5
chr1	1542065	1542165	827862	0	-	0.57	(0.53,0.59]	chr1	82517	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	3.6522	4.58993	5.52766	2.31822e-5	1.38993e-5	5.49766e-4	3.94563e-4
chr2	101002228	101002322	1956987	0	+	0.542553	(0.53,0.59]	chr2	185894	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	77	2483	2	3.87694	4.589695	5.30245	2.77789e-12	1e-12	6.05664e-10	2.25522e-10
chr1	54854036	54854135	1030591	0	-	0.606061	(0.59,1]	chr1	106995	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	4.16976	4.589605000000001	5.00945	0.00149725	4.80088e-5	0.0159607	9.91058e-4
chr15	65570146	65570203	14980090	0	+	0.333333	(0.33,0.36]	chr15	1177584	2	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	4.29439	4.58941	4.88443	9.429e-6	8.34031e-8	2.89287e-4	4.7764e-6
chr17	28326583	28326683	16175260	0	+	0.43	(0.42,0.455]	chr17	1304979	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	3.46409	4.58918	5.71427	2.60265e-6	1.33053e-6	8.97428e-5	5.6008e-5
chr1	21842845	21842921	890834	0	-	0.578947	(0.53,0.59]	chr1	92322	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	117	2	4.24099	4.58863	4.93627	1.28258e-5	9.27623e-10	3.70041e-4	9.83408e-8
chr8	123021446	123021499	10055973	0	-	0.471698	(0.455,0.49]	chr8	756447	1	CDS	CDS:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.92901	4.588285	6.24756	0.00141135	4.80845e-8	0.0151901	2.97443e-6
chr7	10940015	10940057	8678281	0	-	0.595238	(0.59,1]	chr7	663728	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000486007.1:ENST00000492822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	137	2	2.42112	4.58805	6.75498	8.09314e-4	2.43192e-7	0.0095085	1.34774e-5
chr11	28036484	28036574	12317605	0	-	0.388889	(0.36,0.39]	chr11	952817	4	CDS	CDS:EXON_MRNA	KIF18A	ENSG00000121621.7	ENST00000263181.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.24194	4.587875	4.93381	0.00276729	1.90009e-4	0.0247437	0.00302753
chr6	36902349	36902434	7135526	0	+	0.482353	(0.455,0.49]	chr6	549776	1	CDS_START	CDS_START:CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.52734	4.58775	6.64816	0.00792433	1.62448e-9	0.0523592	1.61468e-7
chr20	32146784	32146855	17752437	0	+	0.464789	(0.455,0.49]	chr20	1498492	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	4.38917	4.587645	4.78612	3.90809e-6	2.17075e-7	1.38004e-4	1.0861e-5
chr19	2204262	2204360	17195482	0	+	0.479592	(0.455,0.49]	chr19	1412661	11	INTRON	INTRON	DOT1L	ENSG00000104885.18	ENST00000398665.8	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	4.37693	4.587545	4.79816	4.5365e-6	1.71652e-7	1.42727e-4	1.00318e-5
chr1	21876511	21876581	891235	0	-	0.614286	(0.59,1]	chr1	92527	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	1.8502	4.58746	7.32472	0.0334531	2.79623e-9	0.140296	2.57422e-7
chr11	77734374	77734474	12474497	0	-	0.52	(0.49,0.53]	chr11	970419	83	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	119	2	4.58452	4.587365	4.59021	9.98532e-7	8.81726e-10	4.42534e-5	9.40729e-8
chr1	154214456	154214554	1302889	0	-	0.459184	(0.455,0.49]	chr1	131217	1	CDS	CDS:UTR3:EXON_MRNA	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000368518.5:ENST00000368516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.20189	4.587235	4.97258	0.00397662	1.84876e-4	0.0322851	0.00296795
chr11	61857010	61857071	11971941	0	+	0.459016	(0.455,0.49]	chr11	917451	1	CDS	CDS:EXON_MRNA	FADS2	ENSG00000134824.14	ENST00000257261.10:ENST00000522056.5:ENST00000521849.5:ENST00000278840.9:ENST00000521571.6:ENST00000355484.3:ENST00000523235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.20189	4.587235	4.97258	0.00397662	1.84876e-4	0.0322851	0.00296795
chr20	35850834	35850915	17955930	0	-	0.45679	(0.455,0.49]	chr20	1521341	3	EXON_PSEUDO	EXON_PSEUDO	COX7BP2	ENSG00000234274.1	ENST00000437976.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.20189	4.587235	4.97258	0.00397662	1.84876e-4	0.0322851	0.00296795
chr17	82717943	82718043	16385053	0	+	0.59	(0.53,0.59]	chr17	1332776	1	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	3.28422	4.58702	5.88982	2.10061e-4	1.39814e-6	0.00327655	5.82056e-5
chr11	3985264	3985364	11772901	0	+	0.28	[0,0.29]	chr11	900829	172	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5:ENST00000532990.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.57416	4.586875	4.59959	7.13769e-4	6.75561e-4	0.00873562	0.0085671400000000009
chr14	94726484	94726583	14470713	0	+	0.494949	(0.49,0.53]	chr14	1130296	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP4	ENSG00000239269.1	ENST00000488229.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	43	2	4.27961	4.58683	4.89405	2.57983e-4	9.03426e-6	0.00419998	2.53429e-4
chr21	16019791	16019891	18053242	0	+	0.52	(0.49,0.53]	chr21	1532073	53	INTRON	INTRON	MIR99AHG	ENSG00000215386.13	ENST00000635845.1:ENST00000653129.1:ENST00000658708.1:ENST00000666465.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000667533.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	4.27961	4.58683	4.89405	2.57983e-4	9.03426e-6	0.00419998	2.53429e-4
chr4	163164303	163164391	5764923	0	-	0.409091	(0.39,0.42]	chr4	454783	2	CDS	CDS:EXON_MRNA	NAF1	ENSG00000145414.9	ENST00000422287.6:ENST00000274054.3:ENST00000509232.5:ENST00000502973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.28128	4.586729999999999	4.89218	0.00342611	1.6518e-4	0.0283456	0.0029267300000000002
chr16	67100760	67100859	15708081	0	+	0.40404	(0.39,0.42]	chr16	1249605	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000290858.11:ENST00000412916.7:ENST00000652116.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	4.09419	4.586355	5.07852	1.02164e-4	2.95839e-5	0.00183311	7.34143e-4
chrX	44899085	44899185	18678257	0	+	0.42	(0.39,0.42]	chrX	1592595	247	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	4.09419	4.586355	5.07852	1.02164e-4	2.95839e-5	0.00183311	7.34143e-4
chr18	31546643	31546743	16809166	0	+	0.39	(0.36,0.39]	chr18	1386481	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	6	108	2	3.50603	4.586235	5.66644	5.35493e-7	3.59988e-11	2.35087e-5	6.04921e-9
chr11	33859062	33859160	12344947	0	-	0.510204	(0.49,0.53]	chr11	954142	6	UTR3	UTR3:EXON_MRNA	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000464025.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.4279	4.58614	4.74438	0.00196987	5.91752e-4	0.0193972	0.00743488
chr11	61857453	61857530	11971946	0	+	0.519481	(0.49,0.53]	chr11	917455	1	CDS	CDS:EXON_MRNA	FADS2	ENSG00000134824.14	ENST00000257261.10:ENST00000522056.5:ENST00000521849.5:ENST00000278840.9:ENST00000521571.6:ENST00000355484.3:ENST00000523235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.4279	4.58614	4.74438	0.00196987	5.91752e-4	0.0193972	0.00743488
chr11	62765181	62765208	11973883	0	+	0.518519	(0.49,0.53]	chr11	917895	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	POLR2G	ENSG00000168002.12	ENST00000533442.5:ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.4279	4.58614	4.74438	0.00196987	5.91752e-4	0.0193972	0.00743488
chr12	119009212	119009312	13109684	0	+	0.53	(0.49,0.53]	chr12	1023231	53	INTRON	INTRON	SRRM4	ENSG00000139767.10	ENST00000267260.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.4279	4.58614	4.74438	0.00196987	5.91752e-4	0.0193972	0.00743488
chr4	1879721	1879820	4681415	0	+	0.515152	(0.49,0.53]	chr4	388084	78	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.4279	4.58614	4.74438	0.00196987	5.91752e-4	0.0193972	0.00743488
chr12	98534739	98534838	13036725	0	+	0.292929	(0.29,0.33]	chr12	1014956	5	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	3.81308	4.58606	5.35904	7.56828e-6	1.13633e-9	2.18724e-4	1.27882e-7
chr22	32498143	32498238	18354453	0	+	0.484211	(0.455,0.49]	chr22	1560439	1	CDS	CDS:UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	102	2	3.78292	4.585895	5.38887	1.00549e-6	1.18392e-9	4.45239e-5	1.21843e-7
chr7	92615239	92615286	8924992	0	-	0.404255	(0.39,0.42]	chr7	681138	1	CDS	CDS:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.85207	4.5858799999999995	5.31969	1.28587e-4	2.68682e-5	0.00241206	6.19143e-4
chr17	30176079	30176178	16185549	0	+	0.30303	(0.29,0.33]	chr17	1306349	31	INTRON	INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.24387	4.585795	4.92772	0.00263476	1.56621e-4	0.0239118	0.00259991
chr13	29519446	29519497	13945274	0	-	0.568627	(0.53,0.59]	chr13	1094572	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.2425	4.58567	5.92884	2.6381e-4	1.11987e-6	0.00427022	4.4003e-5
chr11	4127034	4127108	11774357	0	+	0.472973	(0.455,0.49]	chr11	901024	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.41041	4.585445	4.76048	0.00218771	3.99985e-4	0.0202707	0.00588767
chr19	55609711	55609811	17396852	0	+	0.47	(0.455,0.49]	chr19	1448813	36	INTRON	INTRON	ZNF865	ENSG00000261221.4	ENST00000568956.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.41041	4.585445	4.76048	0.00218771	3.99985e-4	0.0202707	0.00588767
chr9	70917164	70917248	10681673	0	-	0.392857	(0.39,0.42]	chr9	808586	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	TRPM3:PIGUP1	ENSG00000083067.24:ENSG00000224437.2	ENST00000677713.2:ENST00000377110.9:ENST00000377111.8:ENST00000357533.6:ENST00000354500.6:ENST00000423148.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	0	21	2	4.49324	4.585445	4.67765	0.00108192	7.04737e-4	0.0124943	0.00848325
chr1	155136889	155136951	483020	0	+	0.532258	(0.53,0.59]	chr1	50516	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC50A1	ENSG00000169241.19	ENST00000484157.5:ENST00000490770.5:ENST00000475824.6:ENST00000465546.5:ENST00000368401.6:ENST00000622581.4:ENST00000490276.5:ENST00000303343.12:ENST00000368404.9:ENST00000650403.1:ENST00000368405.7:ENST00000488609.5:ENST00000506037.1:ENST00000484027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.30195	4.585089999999999	4.86823	0.00421989	4.35895e-4	0.0328662	0.00623608
chr16	30224708	30224807	15913247	0	-	0.535354	(0.53,0.59]	chr16	1275086	17	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.30195	4.585089999999999	4.86823	0.00421989	4.35895e-4	0.0328662	0.00623608
chr20	34740957	34741057	17948848	0	-	0.54	(0.53,0.59]	chr20	1520152	7	CDS	CDS:EXON_MRNA:INTRON	NCOA6	ENSG00000198646.14	ENST00000628752.2:ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.30195	4.585089999999999	4.86823	0.00421989	4.35895e-4	0.0328662	0.00623608
chr5	654079	654177	5850976	0	+	0.561224	(0.53,0.59]	chr5	459950	5	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.30195	4.585089999999999	4.86823	0.00421989	4.35895e-4	0.0328662	0.00623608
chr12	122092962	122093062	13122632	0	+	0.47	(0.455,0.49]	chr12	1024773	133	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.50805	4.585075	4.6621	0.00122223	7.84472e-4	0.0135383	0.00927662
chr16	4427188	4427284	15501001	0	+	0.46875	(0.455,0.49]	chr16	1228963	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	DNAJA3:RP11-295D4.4	ENSG00000103423.14:ENSG00000277170.1	ENST00000431375.6:ENST00000355296.8:ENST00000576911.5:ENST00000575106.5:ENST00000570857.5:ENST00000262375.11:ENST00000572974.1:ENST00000574895.1:ENST00000573120.5:ENST00000614983.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	22	2	4.50805	4.585075	4.6621	0.00122223	7.84472e-4	0.0135383	0.00927662
chr17	15975148	15975242	16139928	0	+	0.468085	(0.455,0.49]	chr17	1300485	6	CDS	CDS:EXON_MRNA	ADORA2B	ENSG00000170425.4	ENST00000304222.3:ENST00000582124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.50805	4.585075	4.6621	0.00122223	7.84472e-4	0.0135383	0.00927662
chr2	232857254	232857352	2433843	0	+	0.459184	(0.455,0.49]	chr2	219595	5	UTR3	UTR3:UTR5:EXON_MRNA	GIGYF2:SNORC	ENSG00000204120.16:ENSG00000182600.9	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5:ENST00000448993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.50805	4.585075	4.6621	0.00122223	7.84472e-4	0.0135383	0.00927662
chr8	37753914	37753964	9290033	0	+	0.48	(0.455,0.49]	chr8	710373	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000519638.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.50805	4.585075	4.6621	0.00122223	7.84472e-4	0.0135383	0.00927662
chr8	140530744	140530844	10132150	0	-	0.48	(0.455,0.49]	chr8	760954	107	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.50805	4.585075	4.6621	0.00122223	7.84472e-4	0.0135383	0.00927662
chr1	44001389	44001468	969390	0	-	0.56962	(0.53,0.59]	chr1	102261	1	CDS	CDS:EXON_MRNA	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr1	165655404	165655504	515905	0	+	0.55	(0.53,0.59]	chr1	55492	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000494074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr10	80516203	80516263	11152006	0	+	0.55	(0.53,0.59]	chr10	847921	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr12	118026888	118026953	13108770	0	+	0.584615	(0.53,0.59]	chr12	1023069	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000472603.1:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr19	6440554	6440652	17442462	0	-	0.571429	(0.53,0.59]	chr19	1456911	6	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr21	43693982	43694081	18135734	0	+	0.565657	(0.53,0.59]	chr21	1538248	7	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr22	35417743	35417799	18359568	0	+	0.571429	(0.53,0.59]	chr22	1561047	1	CDS	CDS:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	4.30776	4.58504	4.86232	0.00407289	4.57805e-4	0.0324137	0.00608573
chr2	239915388	239915488	3244902	0	-	0.4	(0.39,0.42]	chr2	285963	20	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.49145	4.585005	5.67856	0.0350273	1.29189e-6	0.141505	5.48279e-5
chr10	73051150	73051249	11568678	0	-	0.323232	(0.29,0.33]	chr10	880487	2	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	146	2	4.36798	4.584910000000001	4.80184	2.2147e-7	8.63332e-12	1.24319e-5	1.52661e-9
chr11	314881	314952	11756476	0	+	0.619718	(0.59,1]	chr11	897774	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000528780.5:ENST00000328221.5:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1:ENST00000525554.1:ENST00000680611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.36223	4.5846599999999995	5.80709	0.00203572	4.94887e-5	0.0192213	0.00112479
chr20	32165344	32165444	17752633	0	+	0.49	(0.455,0.49]	chr20	1498540	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1:ENST00000479591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	4.28007	4.58465	4.88923	8.3464e-6	9.45747e-8	2.58924e-4	5.31584e-6
chr18	51082254	51082354	16875333	0	+	0.34	(0.33,0.36]	chr18	1390033	39	UTR3	UTR3:EXON_MRNA	SMAD4	ENSG00000141646.14	ENST00000398417.6:ENST00000342988.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.52266	4.584095	4.64553	8.34989e-4	6.69086e-4	0.0102956	0.00820018
chr3	28447811	28447898	3374592	0	+	0.471264	(0.455,0.49]	chr3	294643	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZCWPW2:RP11-9J18.1:AC093142.2	ENSG00000206559.8:ENSG00000283563.1:ENSG00000230480.1	ENST00000383768.7:ENST00000635992.1:ENST00000428875.1:ENST00000419130.5:ENST00000436725.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	24	2	4.0204	4.5840700000000005	5.14774	0.00736097	7.45457e-5	0.0490627	0.00142165
chr3	49028299	49028322	4171716	0	-	0.478261	(0.455,0.49]	chr3	350237	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1:ENST00000485500.1:ENST00000496837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.0204	4.5840700000000005	5.14774	0.00736097	7.45457e-5	0.0490627	0.00142165
chr5	14639524	14639624	6462515	0	-	0.46	(0.455,0.49]	chr5	502939	2	EXON_PSEUDO	EXON_PSEUDO	CCT6P2	ENSG00000250526.1	ENST00000507234.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.0204	4.5840700000000005	5.14774	0.00736097	7.45457e-5	0.0490627	0.00142165
chr7	32472010	32472110	8209489	0	+	0.47	(0.455,0.49]	chr7	626404	6	EXON_PSEUDO	EXON_PSEUDO	SLC25A5P5	ENSG00000226421.1	ENST00000435239.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	4.0204	4.5840700000000005	5.14774	0.00736097	7.45457e-5	0.0490627	0.00142165
chr8	102651604	102651695	9984340	0	-	0.472527	(0.455,0.49]	chr8	753410	6	CDS	CDS:EXON_MRNA	KLF10	ENSG00000155090.15	ENST00000285407.11:ENST00000395884.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.0204	4.5840700000000005	5.14774	0.00736097	7.45457e-5	0.0490627	0.00142165
chrX	52761447	52761536	18702035	0	+	0.483146	(0.455,0.49]	chrX	1595821	7	UTR3	UTR3:EXON_MRNA:INTRON	SSX2B	ENSG00000268447.6	ENST00000616191.4:ENST00000596480.6:ENST00000612490.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.0204	4.5840700000000005	5.14774	0.00736097	7.45457e-5	0.0490627	0.00142165
chr1	1050725	1050781	2393	0	+	0.660714	(0.59,1]	chr1	561	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.34487	4.58406	4.82325	0.0123678	0.002381	0.0705839	0.0216895
chr19	2733031	2733122	17425549	0	-	0.681319	(0.59,1]	chr19	1453655	3	CDS	CDS:EXON_MRNA:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.34487	4.58406	4.82325	0.0123678	0.002381	0.0705839	0.0216895
chr11	119027725	119027798	12626366	0	-	0.643836	(0.59,1]	chr11	979723	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	4.06457	4.584015	5.10346	8.40506e-4	9.48087e-5	0.00981548	0.00188744
chr19	52211336	52211414	17382133	0	+	0.666667	(0.59,1]	chr19	1445744	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PPP2R1A	ENSG00000105568.18	ENST00000490868.5:ENST00000454220.6:ENST00000322088.11:ENST00000468280.5:ENST00000462990.5:ENST00000473455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.37323	4.583865	4.7945	0.00990413	0.0031766	0.061536	0.0279054
chrX	66256104	66256179	18718197	0	+	0.6	(0.59,1]	chrX	1597054	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.37323	4.583865	4.7945	0.00990413	0.0031766	0.061536	0.0279054
chr2	61483023	61483091	2690392	0	-	0.352941	(0.33,0.36]	chr2	240329	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.15976	4.58381	6.00786	0.00437542	1.72947e-7	0.0340502	8.9642e-6
chrX	153702996	153703058	19273637	0	-	0.548387	(0.53,0.59]	chrX	1637359	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	131	2	4.49433	4.58353	4.67273	6.55143e-7	3.01117e-9	3.09247e-5	2.74652e-7
chr8	97776009	97776108	9506454	0	+	0.616162	(0.59,1]	chr8	722732	1	CDS_START	CDS_START:CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.61023	4.58352	5.55681	7.25496e-4	1.60495e-4	0.00869086	0.00286914
chr12	103942633	103942714	13056870	0	+	0.432099	(0.42,0.455]	chr12	1017345	2	CDS	CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	47	1363	2	3.84305	4.583365000000001	5.32368	7.55507e-12	1e-12	1.48035e-9	2.25522e-10
chr3	33864005	33864067	3399874	0	+	0.483871	(0.455,0.49]	chr3	295755	1	CDS	CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5:ENST00000489869.1:ENST00000473593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.17056	4.583270000000001	5.99598	4.1243e-4	3.33072e-7	0.00604953	1.56608e-5
chr3	13325794	13325862	4046287	0	-	0.632353	(0.59,1]	chr3	339546	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.9891200000000002	4.58262	6.17612	0.00823979	4.87365e-6	0.0540283	1.51951e-4
chr10	7799771	7799843	10915977	0	+	0.5	(0.49,0.53]	chr10	831329	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	3.19744	4.5824549999999995	5.96747	2.74392e-6	3.70439e-7	9.41026e-5	1.92378e-5
chr5	179710023	179710065	6414257	0	+	0.285714	[0,0.29]	chr5	499167	1	CDS	CDS:UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	392	2	3.49471	4.58234	5.66997	7.59477e-9	1e-12	6.71894e-7	2.25522e-10
chr20	52110696	52110784	18011833	0	-	0.590909	(0.59,1]	chr20	1526706	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZFP64:ERP29P1	ENSG00000020256.20:ENSG00000233347.1	ENST00000371518.6:ENST00000361387.6:ENST00000477786.5:ENST00000442902.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	1	63	2	3.62482	4.582255	5.53969	7.40647e-4	1.29608e-4	0.00925967	0.00223885
chr19	58548106	58548180	17413329	0	+	0.486486	(0.455,0.49]	chr19	1451196	2	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597423.1:ENST00000597172.5:ENST00000601150.5:ENST00000597995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	121	2	4.21434	4.58134	4.94834	4.87872e-8	3.85586e-9	3.33126e-6	3.39878e-7
chr10	70422543	70422643	11100456	0	+	0.44	(0.42,0.455]	chr10	844350	9	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	4.14705	4.581335	5.01562	1.01971e-4	2.1071e-5	0.0019861	5.06044e-4
chr16	81031387	81031485	15767803	0	+	0.438776	(0.42,0.455]	chr16	1255241	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CENPN:RP11-303E16.2	ENSG00000166451.14:ENSG00000261061.1	ENST00000393335.7:ENST00000305850.10:ENST00000566639.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	22	2	4.25028	4.581205000000001	4.91213	0.00406761	1.75074e-4	0.032143	0.00306313
chr11	66369059	66369129	12424344	0	-	0.571429	(0.53,0.59]	chr11	964657	1	CDS	CDS:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	4.04528	4.581175	5.11707	1.35965e-4	4.28524e-5	0.00231202	9.98851e-4
chr11	65132997	65133074	12421700	0	-	0.558442	(0.53,0.59]	chr11	963771	2	CDS	CDS:EXON_MRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1:ENST00000525874.1:ENST00000533685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.47419	4.58115	5.68811	8.75273e-4	5.40688e-6	0.0106963	1.64762e-4
chr11	90283697	90283792	12059336	0	+	0.568421	(0.53,0.59]	chr11	929980	13	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	134	2	4.46764	4.580515	4.69339	5.65391e-8	8.05453e-9	3.41755e-6	7.06583e-7
chr7	103542804	103542878	8963690	0	-	0.391892	(0.39,0.42]	chr7	686171	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	4.14886	4.580335	5.01181	0.00415881	3.28242e-8	0.0325842	2.15416e-6
chr1	161001073	161001127	1331462	0	-	0.555556	(0.53,0.59]	chr1	136455	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	125	2	4.268	4.5802700000000005	4.89254	1.22494e-7	2.25977e-8	7.48996e-6	1.56738e-6
chr9	122381461	122381552	10452658	0	+	0.527473	(0.49,0.53]	chr9	787064	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	102	2	3.52514	4.580195	5.63525	4.98361e-5	1.28378e-10	0.0011306	1.68887e-8
chr12	4301988	4302087	12704463	0	+	0.373737	(0.36,0.39]	chr12	985544	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	3.08191	4.5800600000000005	6.07821	4.1566e-5	4.37694e-8	8.8376e-4	3.03225e-6
chr11	125609511	125609589	12194422	0	+	0.5	(0.49,0.53]	chr11	940762	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000531001.1:ENST00000524639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	366	2	3.14371	4.58006	6.01641	1.03633e-6	1e-12	4.55345e-5	2.25522e-10
chr14	102028004	102028072	14495646	0	+	0.426471	(0.42,0.455]	chr14	1133174	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000554854.1:ENST00000645697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.40276	4.580019999999999	4.75728	0.0017618	5.3817e-4	0.0180053	0.00686676
chr18	13919682	13919762	17025361	0	-	0.425	(0.42,0.455]	chr18	1399495	2	EXON_PSEUDO	EXON_PSEUDO	RP11-681N23.1	ENSG00000243779.1	ENST00000494882.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.40276	4.580019999999999	4.75728	0.0017618	5.3817e-4	0.0180053	0.00686676
chr2	173955746	173955843	3020161	0	-	0.453608	(0.42,0.455]	chr2	267378	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.40276	4.580019999999999	4.75728	0.0017618	5.3817e-4	0.0180053	0.00686676
chr2	226867251	226867318	2411292	0	+	0.447761	(0.42,0.455]	chr2	216825	2	CDS	CDS:EXON_MRNA	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.40276	4.580019999999999	4.75728	0.0017618	5.3817e-4	0.0180053	0.00686676
chr2	61876919	61876985	2691419	0	-	0.409091	(0.39,0.42]	chr2	240561	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	3.62271	4.57992	5.53713	2.66379e-5	3.48373e-6	6.1526e-4	1.26023e-4
chr21	31667316	31667375	18093478	0	+	0.491525	(0.49,0.53]	chr21	1533896	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	132	2	3.89368	4.579705	5.26573	4.1076e-6	2.46049e-11	1.44512e-4	3.88777e-9
chr16	46660175	46660273	15927115	0	-	0.326531	(0.29,0.33]	chr16	1277396	42	UTR3	UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.62683	4.579675	5.53252	6.18968e-4	4.41551e-6	0.00822794	1.39924e-4
chr2	144511284	144511384	2930492	0	-	0.4	(0.39,0.42]	chr2	259721	40	INTRON	INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000637591.1:ENST00000629955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.79628	4.579585	6.36289	1.07309e-4	4.91294e-9	0.00191901	4.54263e-7
chr22	29415524	29415623	18337091	0	+	0.565657	(0.53,0.59]	chr22	1558272	40	INTRON	INTRON	AC002059.11	ENSG00000285697.1	ENST00000650462.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	155	2	3.78083	4.57942	5.37801	9.87441e-6	1.32259e-11	2.99e-4	2.22696e-9
chr12	112019752	112019823	13094227	0	+	0.521127	(0.49,0.53]	chr12	1021462	2	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000552052.1:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	6	164	2	4.54414	4.579319999999999	4.6145	1.14101e-8	1.65179e-10	9.51023e-7	2.11091e-8
chr10	50307141	50307241	11486523	0	-	0.49	(0.455,0.49]	chr10	876692	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	4.08686	4.57929	5.07172	8.3067e-5	9.7689e-7	0.00171126	3.91836e-5
chrX	40597248	40597344	18667538	0	+	0.427083	(0.42,0.455]	chrX	1591854	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000436783.6:ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637930.1:ENST00000479120.2:ENST00000637140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	147	2	4.39894	4.57925	4.75956	3.61951e-6	1.66765e-11	1.29307e-4	2.7509e-9
chr20	45909593	45909671	17987752	0	-	0.628205	(0.59,1]	chr20	1524223	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.17616	4.57908	5.982	0.00434232	1.42041e-5	0.0339139	3.66887e-4
chr20	45899621	45899685	17987643	0	-	0.546875	(0.53,0.59]	chr20	1524181	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.81839	4.5789349999999995	5.33948	0.0184435	4.08763e-5	0.0945306	9.64741e-4
chrX	135051302	135051394	19246091	0	-	0.543478	(0.53,0.59]	chrX	1634621	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RTL8A	ENSG00000203950.7	ENST00000370775.3:ENST00000518153.1:ENST00000520964.1:ENST00000522309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	4.51944	4.57892	4.6384	2.00484e-6	8.42977e-7	7.16652e-5	3.83773e-5
chr17	81860426	81860471	16709683	0	-	0.755556	(0.59,1]	chr17	1377727	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000681031.1:ENST00000680846.1:ENST00000679366.1:ENST00000681020.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680847.1:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.93234	4.578915	5.22549	5.13843e-4	1.81878e-4	0.00665221	0.00317002
chr2	33186975	33187027	1720686	0	+	0.538462	(0.53,0.59]	chr2	168663	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000432635.1:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.82407	4.57879	5.33351	0.0179666	4.35359e-5	0.0918323	0.00091744700000000005
chr5	149367992	149368085	6290588	0	+	0.569892	(0.53,0.59]	chr5	490742	1	CDS	CDS:UTR3:EXON_MRNA	PCYOX1L	ENSG00000145882.11	ENST00000274569.9:ENST00000511945.5:ENST00000505669.5:ENST00000503240.5:ENST00000514349.1:ENST00000507621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	3.82407	4.57879	5.33351	0.0179666	4.35359e-5	0.0918323	0.00091744700000000005
chr1	35506873	35506960	937695	0	-	0.505747	(0.49,0.53]	chr1	98646	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000494948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.12263	4.57822	5.03381	0.00591451	1.49689e-4	0.0427941	0.0024973
chr1	37493768	37493814	946791	0	-	0.5	(0.49,0.53]	chr1	99427	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.12263	4.57822	5.03381	0.00591451	1.49689e-4	0.0427941	0.0024973
chr15	64963419	64963519	15342358	0	-	0.5	(0.49,0.53]	chr15	1211237	5	UTR3	UTR3:EXON_MRNA	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.12263	4.57822	5.03381	0.00591451	1.49689e-4	0.0427941	0.0024973
chr20	62278275	62278372	17861078	0	+	0.505155	(0.49,0.53]	chr20	1509921	1	EXON_MRNA	EXON_MRNA:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.12263	4.57822	5.03381	0.00591451	1.49689e-4	0.0427941	0.0024973
chr8	23531085	23531184	9230301	0	+	0.494949	(0.49,0.53]	chr8	706529	15	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.12263	4.57822	5.03381	0.00591451	1.49689e-4	0.0427941	0.0024973
chr3	170870167	170870208	4576245	0	-	0.682927	(0.59,1]	chr3	378726	1	UTR5	UTR5:EXON_MRNA	RPL22L1	ENSG00000163584.18	ENST00000295830.13:ENST00000475836.5:ENST00000494771.5:ENST00000463836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	2.92097	4.5782	6.23543	0.0102634	3.47367e-6	0.0628742	1.13687e-4
chr7	128771332	128771431	8521870	0	+	0.333333	(0.33,0.36]	chr7	650198	23	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	3.95743	4.578095	5.19876	2.37278e-5	2.36065e-7	6.1689e-4	1.16738e-5
chr19	10636409	10636497	17225810	0	+	0.625	(0.59,1]	chr19	1418778	2	CDS	CDS:EXON_MRNA	SLC44A2	ENSG00000129353.15	ENST00000588465.5:ENST00000407327.8:ENST00000586078.5:ENST00000335757.10:ENST00000588393.5:ENST00000589561.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.11672	4.577529999999999	5.03834	0.0222273	0.00108238	0.105595	0.0118355
chr8	94641611	94641697	9487711	0	+	0.604651	(0.59,1]	chr8	721747	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRP1	ENSG00000104413.18	ENST00000423620.6:ENST00000433389.8:ENST00000358397.9:ENST00000646773.1:ENST00000454170.7:ENST00000520385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.11672	4.577529999999999	5.03834	0.0222273	0.00108238	0.105595	0.0118355
chr16	88643516	88643581	16073933	0	-	0.769231	(0.59,1]	chr16	1291430	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000565588.5:ENST00000566229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	777	2	4.36817	4.57749	4.78681	9.91769e-10	8.21339e-11	1.13545e-7	1.14209e-8
chr1	116944678	116944760	424763	0	+	0.780488	(0.59,1]	chr1	41931	1	CDS	CDS:EXON_MRNA	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.14483	4.57714	5.00945	0.0183207	0.00149725	0.0945306	0.0159607
chr15	50182716	50182810	14925145	0	+	0.680851	(0.59,1]	chr15	1173393	3	CDS	CDS:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.74084	4.577045	5.41325	4.03818e-4	3.01546e-4	0.00550292	0.00472028
chr2	27239136	27239232	1691738	0	+	0.645833	(0.59,1]	chr2	165770	2	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000456311.1:ENST00000487239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	3.98751	4.576635	5.16576	0.0301044	6.55716e-4	0.129773	0.0080931
chr22	26536405	26536486	18453625	0	-	0.604938	(0.59,1]	chr22	1574345	4	CDS	CDS:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6:ENST00000445720.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	3.98751	4.576635	5.16576	0.0301044	6.55716e-4	0.129773	0.0080931
chr17	7175253	7175351	16428450	0	-	0.520408	(0.49,0.53]	chr17	1339087	4	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.69037	4.576555	5.46274	0.0226513	1.13094e-5	0.10505	3.3464e-4
chr1	89715971	89716070	346909	0	+	0.383838	(0.36,0.39]	chr1	34110	11	UTR3	UTR3:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.0322	4.57637	5.12054	0.00588589	7.15553e-5	0.0427941	0.00137393
chr1	224192378	224192478	728483	0	+	0.39	(0.36,0.39]	chr1	73592	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000323699.9:ENST00000391877.3:ENST00000498813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.0322	4.57637	5.12054	0.00588589	7.15553e-5	0.0427941	0.00137393
chr10	36523557	36523653	11455906	0	-	0.385417	(0.36,0.39]	chr10	873366	20	EXON_PSEUDO	EXON_PSEUDO	NAMPTP1	ENSG00000229644.6	ENST00000440465.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.0322	4.57637	5.12054	0.00588589	7.15553e-5	0.0427941	0.00137393
chr17	38921670	38921770	16218441	0	+	0.37	(0.36,0.39]	chr17	1310821	30	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.0322	4.57637	5.12054	0.00588589	7.15553e-5	0.0427941	0.00137393
chr7	107919840	107919937	8457486	0	+	0.360825	(0.36,0.39]	chr7	646335	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.0322	4.57637	5.12054	0.00588589	7.15553e-5	0.0427941	0.00137393
chr1	12097105	12097205	46393	0	+	0.6	(0.59,1]	chr1	6000	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.01545	4.57612	5.13679	0.0251889	9.28022e-4	0.114168	0.0111748
chr7	103540196	103540282	8963662	0	-	0.55814	(0.53,0.59]	chr7	686166	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	4.32972	4.575995	4.82227	7.20871e-6	2.15841e-7	2.30406e-4	1.08163e-5
chr7	66951043	66951135	8307663	0	+	0.402174	(0.39,0.42]	chr7	633385	2	CDS	CDS:EXON_MRNA:INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.88836	4.57595	6.26354	0.0102432	3.79414e-8	0.062872	2.43463e-6
chr1	28095935	28096032	912444	0	-	0.463918	(0.455,0.49]	chr1	95414	3	EXON_PSEUDO	EXON_PSEUDO	SPCS2P4	ENSG00000228589.3	ENST00000436160.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	96	2	4.28007	4.57593	4.87179	8.3464e-6	1.08583e-9	2.58924e-4	1.12612e-7
chr1	44756074	44756155	173945	0	+	0.407407	(0.39,0.42]	chr1	22353	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	4.044	4.575805	5.10761	5.12039e-5	1.34261e-6	0.00114668	5.13723e-5
chr3	33130002	33130067	3397689	0	+	0.384615	(0.36,0.39]	chr3	295489	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1:ENST00000485310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	4.56388	4.575675	4.58747	6.55819e-4	1.11774e-6	0.00860229	4.4003e-5
chr19	23597508	23597592	17276124	0	+	0.535714	(0.53,0.59]	chr19	1427737	3	EXON_PSEUDO	EXON_PSEUDO:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-359H18.2:RPS27P29	ENSG00000268455.1:ENSG00000240231.1	ENST00000600110.1:ENST00000463110.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	2	60	2	2.94125	4.575620000000001	6.20999	0.0012261800000000001	1.51461e-7	0.0135648	8.00634e-6
chr16	18808685	18808783	15877213	0	-	0.316327	(0.29,0.33]	chr16	1269332	40	UTR3	UTR3:EXON_MRNA	SMG1	ENSG00000157106.17	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.45534	4.57532	4.6953	0.00110984	4.88271e-4	0.0127344	0.00638318
chr3	32733483	32733544	3396234	0	+	0.327869	(0.29,0.33]	chr3	295369	2	CDS	CDS:UTR3:EXON_MRNA	CNOT10	ENSG00000182973.19	ENST00000328834.9:ENST00000331889.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.45534	4.57532	4.6953	0.00110984	4.88271e-4	0.0127344	0.00638318
chr22	37858678	37858740	18364482	0	+	0.33871	(0.33,0.36]	chr22	1562168	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1:ENST00000464790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	57	2	3.20887	4.5752299999999995	5.94159	1.76058e-5	1.1372e-7	4.39493e-4	7.00677e-6
chrX	47209604	47209687	18686862	0	+	0.518072	(0.49,0.53]	chrX	1593241	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.23006	4.57503	5.92	0.00253719	6.89283e-7	0.0233955	2.91313e-5
chr2	54974694	54974764	2666126	0	-	0.4	(0.39,0.42]	chr2	238481	1	CDS	CDS:EXON_MRNA:INTRON	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	12	285	2	4.41839	4.574935	4.73148	3.56902e-10	1e-12	4.65374e-8	2.25522e-10
chr3	39412273	39412368	3423844	0	+	0.578947	(0.53,0.59]	chr3	298015	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000443003.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	103	2	4.34742	4.574909999999999	4.8024	2.46815e-7	1.5084e-7	1.36456e-5	7.98925e-6
chr12	56113369	56113465	12898099	0	+	0.458333	(0.455,0.49]	chr12	1004172	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	4.31177	4.574485	4.8372	1.61752e-7	1.24477e-7	8.47204e-6	7.5922e-6
chr8	96273298	96273390	9498651	0	+	0.423913	(0.42,0.455]	chr8	722434	1	CDS	CDS:EXON_MRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000517557.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.70451	4.57446	5.44441	2.72131e-4	8.23077e-6	0.00404713	2.56136e-4
chr3	31616928	31617001	3392293	0	+	0.410959	(0.39,0.42]	chr3	295044	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	4.14477	4.57434	5.00391	9.12714e-5	2.09513e-5	0.00182992	5.04211e-4
chr2	135651729	135651804	2082214	0	+	0.52	(0.49,0.53]	chr2	195340	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000441871.5:ENST00000429703.6:ENST00000425804.1:ENST00000487294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.7546	4.574294999999999	5.39399	2.09468e-4	1.71804e-5	0.00327655	4.72485e-4
chr9	137805036	137805135	10517974	0	+	0.494949	(0.49,0.53]	chr9	797705	13	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	3.7546	4.574294999999999	5.39399	2.09468e-4	1.71804e-5	0.00327655	4.72485e-4
chr15	68086572	68086661	14993967	0	+	0.47191	(0.455,0.49]	chr15	1178656	4	CDS	CDS:UTR3:EXON_MRNA	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	4.16204	4.57375	4.98546	1.83061e-5	4.25596e-8	4.99708e-4	2.67971e-6
chr3	128064956	128065037	3725135	0	+	0.481481	(0.455,0.49]	chr3	318488	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	156	2	4.32718	4.57362	4.82006	8.40044e-9	7.99144e-11	7.3079e-7	1.11746e-8
chr11	74969563	74969631	12021481	0	+	0.397059	(0.39,0.42]	chr11	926800	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	4.16663	4.57353	4.98043	1.84729e-5	4.28317e-8	5.02409e-4	2.69344e-6
chr14	23098278	23098377	14175752	0	+	0.424242	(0.42,0.455]	chr14	1110555	3	UTR3	UTR3:EXON_MRNA	C14orf119	ENSG00000179933.6	ENST00000319074.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.31161	4.57347	5.83533	0.00186138	1.15767e-6	0.018635	4.52486e-5
chr2	175178192	175178287	3028022	0	-	0.357895	(0.33,0.36]	chr2	268122	18	UTR3	UTR3:EXON_MRNA	ATP5MC3	ENSG00000154518.10	ENST00000284727.9:ENST00000409194.5:ENST00000392541.3:ENST00000497075.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	191	2	4.21834	4.57325	4.92816	3.59912e-9	1e-12	3.47715e-7	2.25522e-10
chr12	6981084	6981165	13188983	0	-	0.493827	(0.49,0.53]	chr12	1032850	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5:ENST00000535021.5:ENST00000540090.5:ENST00000543794.5:ENST00000536797.5:ENST00000538987.1:ENST00000540060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.8233	4.572545	5.32179	1.44192e-4	2.63311e-5	0.00242438	6.73425e-4
chr20	1372133	1372211	17875192	0	-	0.525641	(0.49,0.53]	chr20	1512314	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000474726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.8233	4.572545	5.32179	1.44192e-4	2.63311e-5	0.00242438	6.73425e-4
chr9	113260322	113260373	10425119	0	+	0.490196	(0.49,0.53]	chr9	784739	2	CDS	CDS:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.8233	4.572545	5.32179	1.44192e-4	2.63311e-5	0.00242438	6.73425e-4
chr4	56502052	56502148	4849149	0	+	0.354167	(0.33,0.36]	chr4	399579	3	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	3.74502	4.57249	5.39996	2.19782e-4	6.52649e-6	0.00339463	2.12073e-4
chr19	10293080	10293163	17224720	0	+	0.722892	(0.59,1]	chr19	1418548	2	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.23348	4.57225	5.91102	0.00352837	2.06903e-5	0.0298518	4.99825e-4
chr9	33037064	33037115	10233718	0	+	0.372549	(0.36,0.39]	chr9	769278	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJA1	ENSG00000086061.16	ENST00000330899.5:ENST00000495015.5:ENST00000465677.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.42503	4.572145	4.71926	0.00133228	5.29682e-4	0.0144372	0.006804
chr12	110570930	110571030	13538290	0	-	0.53	(0.49,0.53]	chr12	1065026	186	INTRON	INTRON	PPTC7	ENSG00000196850.6	ENST00000354300.5	protein_coding	protein_coding	protein_coding	protein_coding	25	705	2	3.30887	4.5721050000000005	5.83534	9.29172e-9	1e-12	7.97366e-7	2.25522e-10
chr12	56598129	56598227	13351663	0	-	0.530612	(0.53,0.59]	chr12	1051592	27	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.62204	4.57186	5.52168	4.3021e-4	1.48967e-5	0.00620274	3.81697e-4
chr19	49907106	49907201	17608166	0	-	0.589474	(0.53,0.59]	chr19	1484490	4	UTR3	UTR3:EXON_MRNA:INTRON	IL4I1:NUP62	ENSG00000104951.16:ENSG00000213024.12	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.62204	4.57186	5.52168	4.3021e-4	1.48967e-5	0.00620274	3.81697e-4
chr6	11723424	11723500	7602068	0	-	0.513158	(0.49,0.53]	chr6	579788	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADTRP	ENSG00000111863.13	ENST00000505099.5:ENST00000414691.8:ENST00000514824.5:ENST00000513651.5:ENST00000512139.5:ENST00000229583.9:ENST00000503285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.8967	4.571245	5.24579	0.0128791	4.073e-5	0.0725185	9.64741e-4
chr10	87784469	87784536	11608181	0	-	0.41791	(0.39,0.42]	chr10	884054	1	CDS	CDS:UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3:ENST00000681602.1:ENST00000680388.1:ENST00000681629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.95786	4.57115	6.18444	0.00138212	7.14249e-8	0.0149186	4.18382e-6
chr9	121180505	121180603	10835880	0	-	0.459184	(0.455,0.49]	chr9	820919	25	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.61558	4.57108	6.52658	0.00184897	4.72215e-9	0.0185736	4.04884e-7
chr7	92127504	92127567	8922245	0	-	0.301587	(0.29,0.33]	chr7	680665	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	4.19202	4.571035	4.95005	9.78718e-5	2.91175e-8	0.0019344	1.94721e-6
chr8	47970693	47970784	9316225	0	+	0.56044	(0.53,0.59]	chr8	713563	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000518680.1:ENST00000517709.1:ENST00000648554.1:ENST00000519470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	4.40251	4.570765	4.73902	4.48447e-6	3.99607e-7	1.41623e-4	2.04183e-5
chr11	59608566	59608650	12400946	0	-	0.52381	(0.49,0.53]	chr11	959452	2	CDS	CDS:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.94177	4.5703	5.19883	0.0104929	6.30063e-5	0.063428	0.00124286
chr19	36901741	36901835	17311245	0	+	0.510638	(0.49,0.53]	chr19	1432513	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF345:RPL31P61	ENSG00000251247.11:ENSG00000243297.2	ENST00000432005.6:ENST00000496160.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	0	25	2	3.94177	4.5703	5.19883	0.0104929	6.30063e-5	0.063428	0.00124286
chr15	58679123	58679202	15311509	0	-	0.35443	(0.33,0.36]	chr15	1208354	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	3.83586	4.5702	5.30454	1.7178e-4	1.93761e-9	0.00302124	1.88458e-7
chr22	45275987	45276085	18393788	0	+	0.55102	(0.53,0.59]	chr22	1566406	5	EXON_PSEUDO	EXON_PSEUDO	CTA-268H5.9	ENSG00000213752.3	ENST00000445867.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	3.61856	4.57012	5.52168	0.0303021	1.48967e-5	0.129773	3.81697e-4
chr11	119046561	119046641	12626435	0	-	0.6375	(0.59,1]	chr11	979753	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4	protein_coding	protein_coding	protein_coding	protein_coding	2	175	2	3.28861	4.56991	5.85121	0.0028753	7.48804e-10	0.0256141	8.11065e-8
chr2	96878493	96878593	2792379	0	-	0.65	(0.59,1]	chr2	249293	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	229	2	3.9933	4.569825	5.14635	2.39487e-7	1.67947e-7	1.18062e-5	9.85659e-6
chr5	109811574	109811674	6143340	0	+	0.44	(0.42,0.455]	chr5	479982	69	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.8515	4.56966	5.28782	0.0119089	3.65299e-5	0.0686664	7.95843e-4
chr5	154049919	154050017	6310020	0	+	0.44898	(0.42,0.455]	chr5	492185	2	CDS	CDS:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000439768.2:ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000522177.1:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.8515	4.56966	5.28782	0.0119089	3.65299e-5	0.0686664	7.95843e-4
chr8	86560402	86560501	9457728	0	+	0.535354	(0.53,0.59]	chr8	720297	21	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	3.86809	4.56948	5.27087	1.18973e-4	5.9416e-5	0.00207755	0.00130151
chr11	489660	489733	11757332	0	+	0.589041	(0.53,0.59]	chr11	898015	2	CDS	CDS:EXON_MRNA	PTDSS2	ENSG00000174915.12	ENST00000308020.6:ENST00000526878.5:ENST00000527325.1:ENST00000531411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	3.30943	4.569375	5.82932	0.0018255	3.27953e-11	0.0183913	5.0249e-9
chr9	122148194	122148277	10840154	0	-	0.409639	(0.39,0.42]	chr9	821159	2	CDS	CDS:EXON_MRNA	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.75753	4.568925	5.38032	2.04026e-4	9.82886e-6	0.00320361	2.98194e-4
chr19	7639988	7640058	17217836	0	+	0.457143	(0.455,0.49]	chr19	1416902	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.26593	4.5688949999999995	4.87186	0.00372962	2.33781e-4	0.0302984	0.00385436
chr7	67189401	67189500	8309708	0	+	0.474747	(0.455,0.49]	chr7	633489	58	INTRON	INTRON	TYW1	ENSG00000198874.13	ENST00000615572.4:ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.26593	4.5688949999999995	4.87186	0.00372962	2.33781e-4	0.0302984	0.00385436
chr5	33454981	33455048	5927380	0	+	0.402985	(0.39,0.42]	chr5	464388	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.14886	4.568555	4.98825	0.00415881	1.62756e-4	0.0325842	0.00266622
chr6	75619363	75619462	7246347	0	+	0.393939	(0.39,0.42]	chr6	558597	164	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000493959.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.14886	4.568555	4.98825	0.00415881	1.62756e-4	0.0325842	0.00266622
chr19	49337146	49337221	17369691	0	+	0.56	(0.53,0.59]	chr19	1442740	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1:ENST00000594743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	3.39705	4.56831	5.73957	1.10308e-4	3.90343e-6	0.00211768	1.26306e-4
chr4	99072572	99072641	5548225	0	-	0.362319	(0.36,0.39]	chr4	443148	1	CDS	CDS:UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	3.74524	4.5681449999999995	5.39105	1.17259e-5	7.73826e-6	3.12994e-4	2.43421e-4
chr17	37147363	37147463	16523947	0	-	0.46	(0.455,0.49]	chr17	1352103	30	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.36307	4.568125	4.77318	0.00218641	4.7888e-4	0.0208941	0.00628636
chr17	80136067	80136131	16704239	0	-	0.484375	(0.455,0.49]	chr17	1376645	2	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000570625.5:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.36307	4.568125	4.77318	0.00218641	4.7888e-4	0.0208941	0.00628636
chr3	120512933	120513018	3693596	0	+	0.470588	(0.455,0.49]	chr3	315835	2	EXON_PSEUDO	EXON_PSEUDO	RP11-359H3.1	ENSG00000244441.1	ENST00000496098.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.36307	4.568125	4.77318	0.00218641	4.7888e-4	0.0208941	0.00628636
chrX	153182762	153182854	18913768	0	+	0.456522	(0.455,0.49]	chrX	1610792	4	CDS	CDS:EXON_MRNA	MAGEA1	ENSG00000198681.7	ENST00000356661.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.36307	4.568125	4.77318	0.00218641	4.7888e-4	0.0208941	0.00628636
chr1	147203859	147203957	1274325	0	-	0.44898	(0.42,0.455]	chr1	126416	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	FMO5:CCT8P1	ENSG00000131781.13:ENSG00000226015.2	ENST00000527849.5:ENST00000441068.6:ENST00000578284.5:ENST00000254090.9:ENST00000369272.7:ENST00000413611.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	52	2	4.24133	4.568104999999999	4.89488	0.00326918	9.35766e-8	0.0282494	5.27504e-6
chr8	129842042	129842141	10088430	0	-	0.353535	(0.33,0.36]	chr8	758466	26	UTR3	UTR3:EXON_MRNA	CYRIB	ENSG00000153310.19	ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5:ENST00000520887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	4.17122	4.568045	4.96487	9.26851e-5	1.72402e-5	0.00185187	4.33531e-4
chr7	4770743	4770843	8109666	0	+	0.39	(0.36,0.39]	chr7	619657	84	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	4.30503	4.567775	4.83052	3.15227e-4	7.76959e-6	0.00452711	2.43892e-4
chr11	47468419	47468519	12386792	0	-	0.4	(0.39,0.42]	chr11	956932	26	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.02687	4.56724	5.10761	5.12039e-5	4.35816e-5	0.00114668	0.00091744700000000005
chr1	153962219	153962284	1300349	0	-	0.630769	(0.59,1]	chr1	130753	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	SLC39A1:RP11-422P24.15:MIR6737	ENSG00000143570.19:ENSG00000285779.1:ENSG00000276584.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1:ENST00000413622.5:ENST00000417348.2:ENST00000617385.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	31	2	4.2353	4.566935	4.89857	0.0165254	0.00182139	0.0873033	0.0176016
chr17	28560048	28560119	16485763	0	-	0.591549	(0.59,1]	chr17	1347703	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000484580.6:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.2353	4.566935	4.89857	0.0165254	0.00182139	0.0873033	0.0176016
chr19	18177911	18177979	17257717	0	+	0.602941	(0.59,1]	chr19	1425252	1	UTR3	UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.2353	4.566935	4.89857	0.0165254	0.00182139	0.0873033	0.0176016
chr9	137279178	137279276	10515662	0	+	0.704082	(0.59,1]	chr9	797347	5	CDS	CDS:EXON_MRNA	TOR4A	ENSG00000198113.3	ENST00000357503.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.2353	4.566935	4.89857	0.0165254	0.00182139	0.0873033	0.0176016
chr19	6441484	6441582	17442472	0	-	0.55102	(0.53,0.59]	chr19	1456913	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9:ENST00000593600.5:ENST00000600682.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	3.39416	4.566865	5.73957	0.00126006	3.90343e-6	0.013837	1.26306e-4
chr19	13872505	13872605	17240951	0	+	0.42	(0.39,0.42]	chr19	1421482	67	INTRON	INTRON	NANOS3	ENSG00000187556.8	ENST00000591727.1:ENST00000591161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	42	2	4.49485	4.566839999999999	4.63883	5.68159e-4	1.93637e-6	0.0077844	6.9799e-5
chr19	50725383	50725467	17376989	0	+	0.654762	(0.59,1]	chr19	1444806	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CLEC11A	ENSG00000105472.13	ENST00000250340.9:ENST00000617718.4:ENST00000599973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.26354	4.566655	4.86977	0.0134233	0.00246014	0.0743429	0.0230058
chr14	94801375	94801463	14776644	0	-	0.511364	(0.49,0.53]	chr14	1157598	7	EXON_PSEUDO	EXON_PSEUDO	RPL15P2	ENSG00000240914.1	ENST00000490252.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	62	2	3.94177	4.56653	5.19129	0.0104929	7.86941e-9	0.063428	6.30554e-7
chr18	46086440	46086494	17103818	0	-	0.388889	(0.36,0.39]	chr18	1404356	2	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000587902.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	4.48261	4.566355	4.6501	5.80078e-7	3.60168e-8	2.50873e-5	2.56668e-6
chr2	222927091	222927166	2406191	0	+	0.52	(0.49,0.53]	chr2	216605	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	3.96757	4.566315	5.16506	6.21316e-5	9.90322e-9	0.00134149	7.695e-7
chr16	58716737	58716813	15967717	0	-	0.486842	(0.455,0.49]	chr16	1281422	2	CDS	CDS:EXON_MRNA:INTRON	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	4.06083	4.566275	5.07172	8.3067e-5	3.56832e-5	0.00171126	7.81595e-4
chr1	76700163	76700256	307200	0	+	0.505376	(0.49,0.53]	chr1	31551	5	EXON_PSEUDO	EXON_PSEUDO	TPI1P1	ENSG00000226415.1	ENST00000420977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	72	2	3.96681	4.56619	5.16557	6.36135e-5	2.40034e-7	0.00136069	1.18282e-5
chr9	105722533	105722621	10400447	0	+	0.409091	(0.39,0.42]	chr9	783675	1	CDS	CDS:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5:ENST00000451560.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.49701	4.56587	6.63473	0.0339607	1.60065e-9	0.141431	1.59782e-7
chr10	95684498	95684561	11633650	0	-	0.52381	(0.49,0.53]	chr10	886121	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TCTN3	ENSG00000119977.22	ENST00000680353.1:ENST00000265993.13:ENST00000371217.10:ENST00000680144.1:ENST00000614499.5:ENST00000681739.1:ENST00000680697.1:ENST00000680709.1:ENST00000679984.1:ENST00000681928.1:ENST00000430368.6:ENST00000679485.1:ENST00000371209.5:ENST00000681127.1:ENST00000679566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.23759	4.56582	4.89405	0.00436474	2.57983e-4	0.0335517	0.00419998
chr19	58300803	58300902	17412195	0	+	0.525253	(0.49,0.53]	chr19	1450940	54	UTR3	UTR3:EXON_MRNA:INTRON	CTD-3138B18.4:ZNF8:ZNF8-ERVK3-1	ENSG00000283515.1:ENSG00000278129.2:ENSG00000267216.1	ENST00000637233.1:ENST00000621650.2:ENST00000591325.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	23	2	4.23759	4.56582	4.89405	0.00436474	2.57983e-4	0.0335517	0.00419998
chr9	124519149	124519248	10850451	0	-	0.515152	(0.49,0.53]	chr9	821976	20	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.23759	4.56582	4.89405	0.00436474	2.57983e-4	0.0335517	0.00419998
chr1	32228726	32228746	127542	0	+	0.4	(0.39,0.42]	chr1	15807	1	CDS	CDS:UTR3:EXON_MRNA	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.38186	4.565475	6.74909	0.00601449	5.66329e-10	0.0434483	6.31253e-8
chr1	202733691	202733788	1451766	0	-	0.494845	(0.49,0.53]	chr1	145787	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000472822.6:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1:ENST00000235790.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.28332	4.565379999999999	4.84744	0.00338762	3.70203e-4	0.0288632	0.00515475
chr2	85341559	85341652	2770203	0	-	0.505376	(0.49,0.53]	chr2	245663	4	EXON_PSEUDO	EXON_PSEUDO	PEBP1P2	ENSG00000270532.1	ENST00000603980.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	4.28332	4.565379999999999	4.84744	0.00338762	3.70203e-4	0.0288632	0.00515475
chr20	46352050	46352138	17989993	0	-	0.522727	(0.49,0.53]	chr20	1524518	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10:ENST00000243896.6:ENST00000372227.5:ENST00000493599.1:ENST00000317734.12:ENST00000480329.5:ENST00000487729.5:ENST00000484318.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.28332	4.565379999999999	4.84744	0.00338762	3.70203e-4	0.0288632	0.00515475
chr7	134294932	134295005	9078570	0	-	0.506849	(0.49,0.53]	chr7	693096	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC35B4	ENSG00000205060.11	ENST00000378509.9:ENST00000416907.5:ENST00000466599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.28332	4.565379999999999	4.84744	0.00338762	3.70203e-4	0.0288632	0.00515475
chr9	131447084	131447145	10498276	0	+	0.508197	(0.49,0.53]	chr9	793504	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000684694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.28332	4.565379999999999	4.84744	0.00338762	3.70203e-4	0.0288632	0.00515475
chr1	55061374	55061465	203825	0	+	0.681319	(0.59,1]	chr1	26174	1	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	200	2	4.1748	4.564970000000001	4.95514	5.81119e-7	2.75625e-7	2.78971e-5	1.32929e-5
chr11	18400836	18400848	11831486	0	+	0.166667	[0,0.29]	chr11	906007	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	3.18016	4.564954999999999	5.94975	8.52953e-5	1.80711e-12	0.0016017	4.14332e-10
chr1	12578717	12578796	862196	0	-	0.620253	(0.59,1]	chr1	87515	1	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	DHRS3:MIR6730	ENSG00000162496.9:ENSG00000276830.1	ENST00000616661.5:ENST00000464917.5:ENST00000622213.1:ENST00000430996.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	68	2	4.25966	4.564715	4.86977	0.00246014	2.95373e-5	0.0230058	6.69635e-4
chr1	113131762	113131862	413743	0	+	0.42	(0.39,0.42]	chr1	40851	78	UTR3	UTR3:EXON_MRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.23561	4.563785	4.89196	2.62166e-4	1.16386e-5	0.0039188	3.43116e-4
chr1	179917942	179918040	580802	0	+	0.438776	(0.42,0.455]	chr1	60265	6	CDS	CDS:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.05889	4.56371	6.06853	0.00524205	2.14495e-7	0.0399155	1.07721e-5
chr1	155137560	155137646	483029	0	+	0.55814	(0.53,0.59]	chr1	50521	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC50A1	ENSG00000169241.19	ENST00000484157.5:ENST00000490770.5:ENST00000475824.6:ENST00000465546.5:ENST00000368401.6:ENST00000622581.4:ENST00000490276.5:ENST00000303343.12:ENST00000368404.9:ENST00000650403.1:ENST00000368405.7:ENST00000488609.5:ENST00000484027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	3.2425	4.56315	5.8838	2.6381e-4	1.51824e-6	0.00427022	5.67784e-5
chr6	31792756	31792825	7662557	0	-	0.550725	(0.53,0.59]	chr6	585335	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	3.2425	4.56315	5.8838	2.6381e-4	1.51824e-6	0.00427022	5.67784e-5
chr4	82818978	82819073	5496420	0	-	0.326316	(0.29,0.33]	chr4	440157	6	UTR3	UTR3:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	189	2	4.56098	4.562785	4.56459	1.4271e-11	3.05511e-12	2.61706e-9	6.11517e-10
chr12	7919824	7919923	13193161	0	-	0.434343	(0.42,0.455]	chr12	1033481	7	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	3.50825	4.562695	5.61714	5.86898e-5	4.98624e-6	0.00129243	1.54467e-4
chrX	78113821	78113899	18747019	0	+	0.538462	(0.53,0.59]	chrX	1599815	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000477335.5:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	330	2	3.48942	4.5626750000000005	5.63593	2.22355e-8	1e-12	1.68276e-6	2.25522e-10
chr1	43361182	43361245	164226	0	+	0.587302	(0.53,0.59]	chr1	20863	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000482046.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.5393	4.5623000000000005	5.5853	6.46017e-4	9.83355e-6	0.00799743	2.98194e-4
chr18	5232965	5233056	17000267	0	-	0.483516	(0.455,0.49]	chr18	1397057	2	EXON_LNCRNA	EXON_LNCRNA	RP11-835E18.5	ENSG00000265091.5	ENST00000581170.5:ENST00000579933.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	3.12843	4.5622050000000005	5.99598	0.00392855	3.33072e-7	0.0322851	1.56608e-5
chr1	202333236	202333335	1450349	0	-	0.525253	(0.49,0.53]	chr1	145688	1	CDS	CDS:UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	4.49833	4.562035	4.62574	1.88388e-6	7.86745e-7	7.53959e-5	3.25904e-5
chr5	80651454	80651552	6667610	0	-	0.510204	(0.49,0.53]	chr5	514741	15	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	380	8885	2	4.49871	4.561805	4.6249	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	61309795	61309877	12403989	0	-	0.512195	(0.49,0.53]	chr11	960199	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	3.80176	4.561775	5.32179	2.63311e-5	9.10034e-7	6.73425e-4	3.69437e-5
chr1	110899195	110899285	405635	0	+	0.444444	(0.42,0.455]	chr1	39842	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1:ENST00000464329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	4.55396	4.56142	4.56888	1.1745e-6	1.1523e-6	4.9483e-5	4.57782e-5
chr1	228099112	228099212	744044	0	+	0.26	[0,0.29]	chr1	75099	12	UTR3	UTR3:EXON_MRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding	7	97	2	3.91861	4.561325	5.20404	2.26341e-5	1.20613e-9	5.9266e-4	1.24019e-7
chr10	104315469	104315565	11678455	0	-	0.59375	(0.59,1]	chr10	891073	11	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.77418	4.560685	6.34719	0.0160729	1.80806e-6	0.0860154	6.57974e-5
chr4	189474081	189474174	5273037	0	+	0.44086	(0.42,0.455]	chr4	423942	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AA4P	ENSG00000205100.2	ENST00000506915.1:ENST00000378770.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	43	2	4.4415	4.560655	4.67981	5.38444e-4	2.94164e-6	0.00744072	9.91141e-5
chr17	35674248	35674321	16206999	0	+	0.342466	(0.33,0.36]	chr17	1309119	2	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	4.28926	4.56062	4.83198	1.88689e-4	7.83197e-6	0.0032588	2.24375e-4
chr15	72346593	72346661	15369457	0	-	0.602941	(0.59,1]	chr15	1214425	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.4902	4.560525	5.63085	0.00130379	8.43355e-5	0.0142445	0.0015859
chr16	16293651	16293744	15569454	0	+	0.548387	(0.53,0.59]	chr16	1233078	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000678148.1:ENST00000573635.1:ENST00000570732.2:ENST00000570346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.00393	4.5605	5.11707	0.0108084	1.35965e-4	0.064368	0.00231202
chr16	54874112	54874170	15953518	0	-	0.551724	(0.53,0.59]	chr16	1279495	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.10	ENST00000637011.1:ENST00000613942.2:ENST00000658082.1:ENST00000661493.1	lncRNA	lncRNA	lncRNA	lncRNA	0	26	2	4.00393	4.5605	5.11707	0.0108084	1.35965e-4	0.064368	0.00231202
chr4	75793759	75793830	4892937	0	+	0.56338	(0.53,0.59]	chr4	403045	2	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.00393	4.5605	5.11707	0.0108084	1.35965e-4	0.064368	0.00231202
chr6	52404178	52404278	7177652	0	+	0.58	(0.53,0.59]	chr6	555099	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.00393	4.5605	5.11707	0.0108084	1.35965e-4	0.064368	0.00231202
chr13	99546984	99547044	13865492	0	+	0.55	(0.53,0.59]	chr13	1087201	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.2308500000000002	4.560335	5.88982	2.81517e-4	1.39814e-6	0.00415519	5.82056e-5
chr11	61905536	61905636	12406519	0	-	0.52	(0.49,0.53]	chr11	960752	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RAB3IL1	ENSG00000167994.13	ENST00000301773.9:ENST00000531922.2:ENST00000394836.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.29825	4.56021	5.82217	0.00019429700000000001	1.36598e-6	0.00332542	5.18684e-5
chr14	44120301	44120393	14598155	0	-	0.413043	(0.39,0.42]	chr14	1143461	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC02307:RP11-305B6.1	ENSG00000258969.2:ENSG00000259137.1	ENST00000654351.1:ENST00000553827.1:ENST00000555080.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	21	2	4.3313	4.56004	4.78878	0.00209984	4.27222e-4	0.0204266	0.00577513
chr15	34095894	34095954	15202898	0	-	0.416667	(0.39,0.42]	chr15	1196604	1	CDS	CDS:EXON_MRNA:INTRON	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.3313	4.56004	4.78878	0.00209984	4.27222e-4	0.0204266	0.00577513
chr6	12120885	12120985	7055503	0	+	0.41	(0.39,0.42]	chr6	540264	11	CDS	CDS:UTR5:EXON_MRNA:INTRON	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.3313	4.56004	4.78878	0.00209984	4.27222e-4	0.0204266	0.00577513
chr8	143857607	143857701	10146414	0	-	0.393617	(0.39,0.42]	chr8	762988	4	UTR3	UTR3:EXON_MRNA	EPPK1	ENSG00000261150.3	ENST00000615648.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.3313	4.56004	4.78878	0.00209984	4.27222e-4	0.0204266	0.00577513
chr19	40370173	40370237	17328651	0	+	0.609375	(0.59,1]	chr19	1435562	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	PLD3:MIR6796	ENSG00000105223.20:ENSG00000275652.1	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000409281.5:ENST00000492243.1:ENST00000599353.1:ENST00000617519.1:ENST00000480030.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	81	2	3.20238	4.560005	5.91763	4.79306e-4	2.85329e-5	0.00629006	7.16403e-4
chr12	6731242	6731332	12713907	0	+	0.477778	(0.455,0.49]	chr12	986756	2	UTR3	UTR3:EXON_MRNA	COPS7A	ENSG00000111652.10	ENST00000626119.2:ENST00000455113.6:ENST00000543155.6:ENST00000229251.7:ENST00000539735.5:ENST00000538410.5:ENST00000543939.5:ENST00000534947.5:ENST00000534877.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.87233	4.559785	5.24724	1.08465e-4	3.09759e-5	0.00193256	7.62166e-4
chr7	100620956	100621041	8952161	0	-	0.729412	(0.59,1]	chr7	684152	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	117	2	2.01575	4.559785	7.10382	0.0201728	1.34828e-8	0.0978331	1.00447e-6
chr11	62627047	62627124	12409716	0	-	0.597403	(0.59,1]	chr11	961243	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000531563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	277	2	3.76495	4.559695	5.35444	1.96952e-7	4.12823e-8	1.00296e-5	2.89549e-6
chr11	14461258	14461331	12281588	0	-	0.410959	(0.39,0.42]	chr11	949584	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000526527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	4.11528	4.559595	5.00391	9.12714e-5	7.73976e-7	0.00182992	3.2172e-5
chr1	173741673	173741758	549502	0	+	0.505882	(0.49,0.53]	chr1	58349	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	KLHL20:RP11-360D2.2	ENSG00000076321.11:ENSG00000225591.2	ENST00000209884.5:ENST00000455497.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	43	2	4.32769	4.5592749999999995	4.79086	4.20783e-4	6.54988e-6	0.00611538	1.94116e-4
chr6	26123623	26123713	7647051	0	-	0.566667	(0.53,0.59]	chr6	582518	1	CDS	CDS:EXON_MRNA	H2BC4	ENSG00000180596.7	ENST00000314332.5:ENST00000396984.1	protein_coding	protein_coding	protein_coding	protein_coding	20	562	2	4.54247	4.559105	4.57574	1e-12	1e-12	2.46312e-10	2.25522e-10
chr17	74209829	74209920	16348725	0	+	0.351648	(0.33,0.36]	chr17	1326169	1	UTR3	UTR3:EXON_MRNA	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000311111.11:ENST00000584577.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.15976	4.558895	5.95803	0.00437542	2.53891e-7	0.0340502	1.24442e-5
chr8	116755797	116755829	10035031	0	-	0.4375	(0.42,0.455]	chr8	755395	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	193	2	4.10797	4.558825000000001	5.00968	6.28319e-8	1.11899e-12	4.14657e-6	2.49027e-10
chr1	196745816	196745907	641549	0	+	0.461538	(0.455,0.49]	chr1	64530	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.81275	4.55833	5.30391	0.0138827	3.12735e-5	0.0760883	6.97306e-4
chr14	41640026	41640126	14259692	0	+	0.48	(0.455,0.49]	chr14	1115222	300	INTRON	INTRON	LRFN5	ENSG00000165379.14	ENST00000298119.9:ENST00000555279.5:ENST00000554120.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.81275	4.55833	5.30391	0.0138827	3.12735e-5	0.0760883	6.97306e-4
chr17	79787590	79787688	16370192	0	+	0.479592	(0.455,0.49]	chr17	1330057	27	UTR3	UTR3:EXON_MRNA	CBX2	ENSG00000173894.11	ENST00000310942.9	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.81275	4.55833	5.30391	0.0138827	3.12735e-5	0.0760883	6.97306e-4
chr20	37232295	37232391	17777904	0	+	0.604167	(0.59,1]	chr20	1502072	1	CDS	CDS:EXON_MRNA:INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11:ENST00000437329.5:ENST00000456400.1:ENST00000470352.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	319	2	4.29345	4.55814	4.82283	1.19919e-7	3.61775e-9	6.54118e-6	3.4903e-7
chr15	78925386	78925440	15398619	0	-	0.555556	(0.53,0.59]	chr15	1217562	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	25	2	4.16383	4.55808	4.95233	0.00659193	3.02711e-4	0.0454205	0.00439897
chr16	69119147	69119245	15993735	0	-	0.581633	(0.53,0.59]	chr16	1284021	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5:ENST00000519534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.16383	4.55808	4.95233	0.00659193	3.02711e-4	0.0454205	0.00439897
chr17	16432216	16432300	16142002	0	+	0.583333	(0.53,0.59]	chr17	1300724	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6:ENST00000581560.5:ENST00000580788.6:ENST00000577865.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.16383	4.55808	4.95233	0.00659193	3.02711e-4	0.0454205	0.00439897
chr17	49039956	49040023	16256532	0	+	0.537313	(0.53,0.59]	chr17	1317638	1	CDS	CDS:EXON_MRNA:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.16383	4.55808	4.95233	0.00659193	3.02711e-4	0.0454205	0.00439897
chr9	34270826	34270922	10635393	0	-	0.572917	(0.53,0.59]	chr9	804070	11	INTRON	INTRON	KIF24	ENSG00000186638.17	ENST00000402558.7:ENST00000379174.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.16383	4.55808	4.95233	0.00659193	3.02711e-4	0.0454205	0.00439897
chr2	157305748	157305829	2152590	0	+	0.407407	(0.39,0.42]	chr2	198618	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.70591	4.557855	6.4098	0.0185716	1.13257e-8	0.0932453	8.6123e-7
chr11	1995911	1996003	12230707	0	-	0.478261	(0.455,0.49]	chr11	944462	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H19	ENSG00000130600.19	ENST00000414790.6:ENST00000412788.5:ENST00000439725.5:ENST00000411861.5:ENST00000417089.6:ENST00000431095.7:ENST00000442037.5:ENST00000428066.6:ENST00000436715.5:ENST00000447298.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	69	2	4.0992	4.5576799999999995	5.01616	2.73975e-5	3.28358e-8	6.95757e-4	2.15416e-6
chr11	65352721	65352817	11984149	0	+	0.479167	(0.455,0.49]	chr11	920300	11	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	149	2	3.66088	4.557645	5.45441	2.10216e-8	4.62154e-10	1.47005e-6	5.82996e-8
chr6	7282038	7282137	7586812	0	-	0.50505	(0.49,0.53]	chr6	578692	10	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	4.1249	4.55762	4.99034	1.6002e-4	2.4461e-5	0.00286408	5.72214e-4
chr9	83972907	83972972	10712917	0	-	0.446154	(0.42,0.455]	chr9	810508	2	CDS	CDS:UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	168	2	4.26937	4.557460000000001	4.84555	2.3768e-9	4.04148e-11	2.23872e-7	6.68903e-9
chr9	112220386	112220485	10802886	0	-	0.363636	(0.36,0.39]	chr9	818409	28	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	3.27375	4.557415	5.84108	6.41801e-7	3.0375e-7	2.74475e-5	1.62555e-5
chr11	1758968	1759027	12230484	0	-	0.610169	(0.59,1]	chr11	944405	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6:ENST00000677300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	166	2	3.92442	4.557385	5.19035	1.15837e-5	9.19048e-8	3.42174e-4	5.19338e-6
chrX	123629244	123629341	19198448	0	-	0.340206	(0.33,0.36]	chrX	1632541	9	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.03706	4.5573	5.07754	7.92926e-5	5.18043e-5	0.00150306	0.00115752
chr5	93682929	93683021	6701885	0	-	0.380435	(0.36,0.39]	chr5	516399	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	FAM172A:NPM1P27	ENSG00000113391.19:ENSG00000249353.2	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000502784.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	4	92	2	4.55651	4.55715	4.55779	1.80567e-8	1.77771e-8	1.38654e-6	1.29516e-6
chr11	34464169	34464235	11906267	0	+	0.439394	(0.42,0.455]	chr11	909820	2	CDS	CDS:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000530343.1:ENST00000525707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	4.20049	4.55631	4.91213	1.75074e-4	1.49765e-5	0.00306313	3.83096e-4
chr19	40377985	40378073	17328737	0	+	0.659091	(0.59,1]	chr19	1435587	1	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000488311.1:ENST00000486134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	218	2	3.19512	4.55614	5.91716	1.34473e-4	4.51201e-10	0.00249552	5.17986e-8
chr1	167722151	167722242	523912	0	+	0.747253	(0.59,1]	chr1	56249	1	CDS_START	CDS_START:CDS:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.54183	4.5561	4.57037	0.0070583	0.0054994	0.0478044	0.0402071
chr17	44385633	44385716	16558155	0	-	0.60241	(0.59,1]	chr17	1359504	2	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000262407.6:ENST00000592944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.54183	4.5561	4.57037	0.0070583	0.0054994	0.0478044	0.0402071
chr17	78975952	78976046	16698123	0	-	0.680851	(0.59,1]	chr17	1376242	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5:ENST00000588198.5:ENST00000589527.5:ENST00000588587.5:ENST00000585407.5:ENST00000589775.6:ENST00000589906.5:ENST00000587310.5:ENST00000588205.5:ENST00000588990.5:ENST00000588899.1:ENST00000591274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.54183	4.5561	4.57037	0.0070583	0.0054994	0.0478044	0.0402071
chr6	41787602	41787697	7150310	0	+	0.652632	(0.59,1]	chr6	551641	6	UTR3	UTR3:UTR5:EXON_MRNA	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.54183	4.5561	4.57037	0.0070583	0.0054994	0.0478044	0.0402071
chr1	149885785	149885879	1287101	0	-	0.531915	(0.53,0.59]	chr1	127851	15	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	4.44255	4.555955	4.66936	0.00103174	3.41603e-6	0.0121443	1.12474e-4
chr7	103472811	103472908	8962955	0	-	0.412371	(0.39,0.42]	chr7	686033	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.05461	4.55581	6.05701	8.55091e-4	1.91744e-7	0.0105173	9.81202e-6
chr1	156293404	156293490	1313976	0	-	0.55814	(0.53,0.59]	chr1	133372	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLMP	ENSG00000198715.13	ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000482579.1:ENST00000481050.1:ENST00000476177.6:ENST00000497955.1:ENST00000368264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.55274	4.55567	4.5586	0.00167999	0.00161229	0.0169168	0.0164993
chr12	122093462	122093562	13122637	0	+	0.57	(0.53,0.59]	chr12	1024773	138	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.55274	4.55567	4.5586	0.00167999	0.00161229	0.0169168	0.0164993
chr16	89304309	89304408	16077349	0	-	0.545455	(0.53,0.59]	chr16	1292159	23	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.55274	4.55567	4.5586	0.00167999	0.00161229	0.0169168	0.0164993
chr20	32165294	32165344	17752632	0	+	0.56	(0.53,0.59]	chr20	1498539	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1:ENST00000479591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.55274	4.55567	4.5586	0.00167999	0.00161229	0.0169168	0.0164993
chr20	45910006	45910070	17987757	0	-	0.5625	(0.53,0.59]	chr20	1524228	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.55274	4.55567	4.5586	0.00167999	0.00161229	0.0169168	0.0164993
chr16	18790285	18790383	15877048	0	-	0.622449	(0.59,1]	chr16	1269294	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS15A:RP11-1035H13.3	ENSG00000134419.15:ENSG00000260342.2	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000567078.2:ENST00000573554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	30	1526	2	4.08956	4.55518	5.0208	1.10648e-9	1e-12	1.2513e-7	2.25522e-10
chr4	110084517	110084617	5595402	0	-	0.21	[0,0.29]	chr4	446485	244	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.99212	4.5551449999999996	6.11817	0.0069187	2.14362e-8	0.0473262	1.62968e-6
chr1	159141590	159141688	1324453	0	-	0.612245	(0.59,1]	chr1	135377	12	INTRON	INTRON	AIM2	ENSG00000163568.15	ENST00000411768.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	262	2	4.09167	4.554905	5.01814	6.29881e-7	5.85549e-9	2.9908e-5	4.90407e-7
chr18	68674375	68674473	17164441	0	-	0.336735	(0.33,0.36]	chr18	1408753	8	UTR3	UTR3:EXON_MRNA	TMX3	ENSG00000166479.10	ENST00000299608.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.1284	4.5547249999999995	4.98105	0.00407303	1.32493e-4	0.0324137	0.00227943
chr8	94867139	94867196	9489740	0	+	0.350877	(0.33,0.36]	chr8	722083	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000520845.5:ENST00000520315.5:ENST00000517918.5:ENST00000519736.5:ENST00000521155.5:ENST00000522261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.1284	4.5547249999999995	4.98105	0.00407303	1.32493e-4	0.0324137	0.00227943
chr5	91368827	91368926	6695297	0	-	0.262626	[0,0.29]	chr5	516141	3	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.47088	4.554675	5.63847	0.0015572	1.9181e-6	0.0165415	6.93031e-5
chrX	101403810	101403897	19151753	0	-	0.517241	(0.49,0.53]	chrX	1628696	1	CDS	CDS:EXON_MRNA	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.76099	4.553945	5.3469	2.00194e-4	2.75121e-5	0.0034021	6.30607e-4
chr6	24976810	24976896	7095355	0	+	0.453488	(0.42,0.455]	chr6	542239	4	EXON_PSEUDO	EXON_PSEUDO	PPIAP29	ENSG00000214975.4	ENST00000414949.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	84	2	3.74859	4.553765	5.35894	1.15347e-5	1.07453e-9	3.09736e-4	1.21913e-7
chr6	108211869	108211962	7883754	0	-	0.387097	(0.36,0.39]	chr6	603535	8	UTR3	UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	288	2	3.72407	4.55369	5.38331	1.86669e-9	1e-12	1.96622e-7	2.25522e-10
chr8	47864555	47864624	9816432	0	-	0.42029	(0.42,0.455]	chr8	742710	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000546304.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	4.09155	4.553585	5.01562	1.01971e-4	2.98142e-5	0.0019861	6.7355e-4
chr1	31906711	31906808	921167	0	-	0.525773	(0.49,0.53]	chr1	96904	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	24	585	2	4.39044	4.553355	4.71627	1.3799e-12	1e-12	2.99764e-10	2.46312e-10
chr16	31132259	31132335	15917001	0	-	0.644737	(0.59,1]	chr16	1275837	3	CDS	CDS:EXON_MRNA	PRSS8	ENSG00000052344.16	ENST00000317508.11:ENST00000568261.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.44671	4.5531950000000005	4.65968	0.00931497	0.00413632	0.0586162	0.0324998
chr22	50286172	50286229	18547104	0	-	0.631579	(0.59,1]	chr22	1584741	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PLXNB2	ENSG00000196576.16	ENST00000359337.9:ENST00000449103.5:ENST00000411680.1:ENST00000496720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.44671	4.5531950000000005	4.65968	0.00931497	0.00413632	0.0586162	0.0324998
chr3	53241131	53241188	4189161	0	-	0.666667	(0.59,1]	chr3	353828	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000487660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.44671	4.5531950000000005	4.65968	0.00931497	0.00413632	0.0586162	0.0324998
chr7	30594831	30594921	8203480	0	+	0.711111	(0.59,1]	chr7	625751	1	UTR5	UTR5:EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.44671	4.5531950000000005	4.65968	0.00931497	0.00413632	0.0586162	0.0324998
chr1	192716471	192716553	630835	0	+	0.426829	(0.42,0.455]	chr1	64056	2	CDS	CDS:EXON_MRNA:PRIMIRNA	MIR4426:RPS27AP5	ENSG00000283795.1:ENSG00000231767.4	ENST00000640330.1:ENST00000647225.1:ENST00000443181.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	0	23	2	4.05954	4.55317	5.0468	0.00617886	1.33918e-4	0.0439741	0.00229039
chr11	82849992	82850071	12499355	0	-	0.43038	(0.42,0.455]	chr11	971452	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.05954	4.55317	5.0468	0.00617886	1.33918e-4	0.0439741	0.00229039
chr12	124478711	124478811	13599212	0	-	0.45	(0.42,0.455]	chr12	1071626	52	INTRON	INTRON	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000429285.6:ENST00000458234.5:ENST00000420698.5:ENST00000542927.5:ENST00000448008.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.05954	4.55317	5.0468	0.00617886	1.33918e-4	0.0439741	0.00229039
chr16	46662982	46663072	15927147	0	-	0.422222	(0.42,0.455]	chr16	1277415	1	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000562420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.05954	4.55317	5.0468	0.00617886	1.33918e-4	0.0439741	0.00229039
chr2	177231165	177231258	3033061	0	-	0.44086	(0.42,0.455]	chr2	268539	4	CDS	CDS:EXON_MRNA:INTRON	NFE2L2	ENSG00000116044.16	ENST00000458603.1:ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.05954	4.55317	5.0468	0.00617886	1.33918e-4	0.0439741	0.00229039
chr8	30578920	30579020	9780933	0	-	0.43	(0.42,0.455]	chr8	739603	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GTF2E2	ENSG00000197265.9	ENST00000355904.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.05954	4.55317	5.0468	0.00617886	1.33918e-4	0.0439741	0.00229039
chr19	1047304	1047378	17190949	0	+	0.743243	(0.59,1]	chr19	1411466	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000533574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.47517	4.553115	4.63106	0.00735659	0.00537945	0.0491503	0.0406564
chr2	219251239	219251323	3191527	0	-	0.595238	(0.59,1]	chr2	280990	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2:ENST00000427737.6:ENST00000456818.5:ENST00000462806.5:ENST00000447205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.47517	4.553115	4.63106	0.00735659	0.00537945	0.0491503	0.0406564
chr10	72097147	72097240	11563919	0	-	0.505376	(0.49,0.53]	chr10	880108	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000534259.1:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000530394.5:ENST00000672940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	4.54668	4.552985	4.55929	0.00116196	1.40979e-6	0.0130851	5.33111e-5
chr16	68191500	68191591	15714920	0	+	0.538462	(0.53,0.59]	chr16	1251034	9	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	134	2	4.25518	4.552795	4.85041	3.09064e-7	2.03481e-9	1.64892e-5	1.96379e-7
chr13	99554379	99554455	13865569	0	+	0.368421	(0.36,0.39]	chr13	1087219	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	4.3741	4.55278	4.73146	4.74881e-6	3.06966e-7	1.63715e-4	1.45846e-5
chr13	79551020	79551120	13800323	0	+	0.35	(0.33,0.36]	chr13	1085542	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NDFIP2	ENSG00000102471.14	ENST00000612570.4:ENST00000218652.11:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.33896	4.552605	4.76625	0.00182033	3.84608e-4	0.0183913	0.00531017
chr15	72546652	72546751	15018348	0	+	0.353535	(0.33,0.36]	chr15	1180057	13	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.33896	4.552605	4.76625	0.00182033	3.84608e-4	0.0183913	0.00531017
chr17	32481128	32481228	16201203	0	+	0.35	(0.33,0.36]	chr17	1308289	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.33896	4.552605	4.76625	0.00182033	3.84608e-4	0.0183913	0.00531017
chr9	122846941	122847040	10841398	0	-	0.353535	(0.33,0.36]	chr9	821358	25	UTR3	UTR3:EXON_MRNA	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.33896	4.552605	4.76625	0.00182033	3.84608e-4	0.0183913	0.00531017
chr6	30061524	30061624	7109998	0	+	0.58	(0.53,0.59]	chr6	544468	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	POLR1H	ENSG00000066379.15	ENST00000471008.5:ENST00000376782.6:ENST00000359374.8:ENST00000376785.2:ENST00000332435.10:ENST00000463141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	3.46349	4.55211	5.64073	9.2216e-4	7.00135e-6	0.0104432	2.25852e-4
chr1	27407099	27407198	908774	0	-	0.555556	(0.53,0.59]	chr1	95011	30	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.98115	4.55208	5.12301	1.2852e-4	6.28226e-5	0.00241206	0.00124286
chr1	203861659	203861713	670666	0	+	0.574074	(0.53,0.59]	chr1	67655	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	3.98115	4.55208	5.12301	1.2852e-4	6.28226e-5	0.00241206	0.00124286
chr15	44711546	44711613	14899911	0	+	0.597015	(0.59,1]	chr15	1171690	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	199	2	3.61204	4.551935	5.49183	1.29067e-5	1.09136e-8	3.71946e-4	8.34724e-7
chr19	40625856	40625932	17330501	0	+	0.644737	(0.59,1]	chr19	1436060	1	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	3.0542	4.551925	6.04965	0.00663549	9.85057e-6	0.0456243	2.72926e-4
chr10	106736608	106736708	11680602	0	-	0.41	(0.39,0.42]	chr10	891287	61	INTRON	INTRON	SORCS1	ENSG00000108018.16	ENST00000263054.11:ENST00000612154.4:ENST00000622431.4:ENST00000344440.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.93996	4.551715	5.16347	0.00841622	6.48089e-5	0.054565	0.00126536
chr17	42131306	42131406	16546006	0	-	0.4	(0.39,0.42]	chr17	1356980	3	SS5_PROX	SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000552162.5:ENST00000546881.1:ENST00000550504.5:ENST00000550406.1:ENST00000550013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.93996	4.551715	5.16347	0.00841622	6.48089e-5	0.054565	0.00126536
chr18	23541067	23541137	17037360	0	-	0.414286	(0.39,0.42]	chr18	1400565	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.93996	4.551715	5.16347	0.00841622	6.48089e-5	0.054565	0.00126536
chr18	57550018	57550117	17137062	0	-	0.393939	(0.39,0.42]	chr18	1407062	58	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.93996	4.551715	5.16347	0.00841622	6.48089e-5	0.054565	0.00126536
chr2	206126776	206126844	3132985	0	-	0.411765	(0.39,0.42]	chr2	276958	2	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.93996	4.551715	5.16347	0.00841622	6.48089e-5	0.054565	0.00126536
chr3	9974435	9974488	4031288	0	-	0.396226	(0.39,0.42]	chr3	338400	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1:ENST00000429759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.93996	4.551715	5.16347	0.00841622	6.48089e-5	0.054565	0.00126536
chr2	231808769	231808866	2426603	0	+	0.546392	(0.53,0.59]	chr2	218752	3	UTR3	UTR3:EXON_MRNA	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000373608.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	4.24099	4.551655	4.86232	4.57805e-4	1.28258e-5	0.00608573	3.70041e-4
chr17	1676288	1676370	16401555	0	-	0.536585	(0.53,0.59]	chr17	1334925	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000576407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.21941	4.551605	5.8838	0.00266171	1.51824e-6	0.0240332	5.67784e-5
chr1	21859918	21860002	891040	0	-	0.630952	(0.59,1]	chr1	92428	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	4.37589	4.551475	4.72706	1.83082e-5	1.91483e-6	4.99708e-4	6.92925e-5
chr11	75566449	75566536	12023326	0	+	0.678161	(0.59,1]	chr11	927007	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	124	2	4.44991	4.551445	4.65298	1.01141e-5	3.73496e-6	2.79672e-4	1.32675e-4
chr17	39990093	39990145	16222504	0	+	0.576923	(0.53,0.59]	chr17	1311738	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000580980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.43279	4.551075	4.66936	0.0026472	0.00103174	0.0231864	0.0121443
chr15	29710830	29710915	15183884	0	-	0.564706	(0.53,0.59]	chr15	1195099	1	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.43863	4.551055	4.66348	0.00254763	0.00107799	0.0233955	0.0118238
chr3	49129928	49130018	4172823	0	-	0.588889	(0.53,0.59]	chr3	350589	2	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.43863	4.551055	4.66348	0.00254763	0.00107799	0.0233955	0.0118238
chr7	132796441	132796509	9075607	0	-	0.544118	(0.53,0.59]	chr7	693005	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.43863	4.551055	4.66348	0.00254763	0.00107799	0.0233955	0.0118238
chr9	132987281	132987350	10502686	0	+	0.565217	(0.53,0.59]	chr9	794029	1	CDS	CDS:EXON_MRNA	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5:ENST00000636263.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.43863	4.551055	4.66348	0.00254763	0.00107799	0.0233955	0.0118238
chr7	26213107	26213207	8183129	0	+	0.4	(0.39,0.42]	chr7	624437	10	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	5	118	2	4.39652	4.551019999999999	4.70552	4.94619e-9	4.01331e-9	4.2017e-7	3.83648e-7
chr17	44075027	44075087	16234038	0	+	0.5	(0.49,0.53]	chr17	1314325	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.23006	4.550985	5.87191	0.00253719	9.67449e-7	0.0233955	3.88631e-5
chr2	112658824	112658903	2001873	0	+	0.341772	(0.33,0.36]	chr2	190038	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.15555	4.550965	6.9463800000000004	0.00575018	3.9089e-11	0.0426551	5.9011e-9
chr14	67678129	67678224	14683352	0	-	0.452632	(0.42,0.455]	chr14	1149624	15	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000553582.5:ENST00000554493.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.24133	4.550855	4.86038	0.00326918	3.34791e-4	0.0282494	0.00472923
chr8	97143019	97143083	9505496	0	+	0.4375	(0.42,0.455]	chr8	722646	1	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000522617.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.24133	4.550855	4.86038	0.00326918	3.34791e-4	0.0282494	0.00472923
chr4	70975219	70975286	4878843	0	+	0.373134	(0.36,0.39]	chr4	401894	2	CDS	CDS:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	3.89837	4.55084	5.20331	9.25116e-5	2.53222e-5	0.00169222	6.51851e-4
chr1	21848961	21849031	890908	0	-	0.642857	(0.59,1]	chr1	92360	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.4558	4.5504750000000005	5.64515	1.35447e-4	1.07144e-4	0.00231202	0.00206452
chr1	224189668	224189761	728453	0	+	0.419355	(0.39,0.42]	chr1	73579	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.93737	4.55042	5.16347	7.80292e-5	6.48089e-5	0.00162998	0.00126536
chrX	154532566	154532644	19278692	0	-	0.551282	(0.53,0.59]	chrX	1638546	1	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000490651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	4.43863	4.55028	4.66193	0.00254763	7.20737e-7	0.0233955	3.019e-5
chr15	89175811	89175903	15093239	0	+	0.565217	(0.53,0.59]	chr15	1187063	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	4.37211	4.550165	4.72822	5.43864e-6	4.40858e-7	1.81467e-4	1.99026e-5
chr1	21834767	21834856	890745	0	-	0.629214	(0.59,1]	chr1	92278	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	99	2	2.67401	4.5498449999999995	6.42568	0.00166951	1.13013e-6	0.0173932	4.43062e-5
chr1	161517974	161518048	500529	0	+	0.418919	(0.39,0.42]	chr1	54249	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5:ENST00000537821.2:ENST00000461298.1:ENST00000459885.1:ENST00000486608.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	4	109	2	4.42473	4.549795	4.67486	3.06235e-6	3.29689e-10	1.13887e-4	3.92702e-8
chr11	67585189	67585241	11996979	0	+	0.538462	(0.53,0.59]	chr11	923170	1	CDS	CDS:UTR3:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	262	2	3.73725	4.549705	5.36216	1.65169e-6	1e-12	6.72241e-5	2.25522e-10
chr11	69328488	69328588	12003237	0	+	0.53	(0.49,0.53]	chr11	924267	112	INTRON	INTRON	MYEOV	ENSG00000172927.8	ENST00000544008.1:ENST00000544781.5:ENST00000535660.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	1	44	2	4.41931	4.5495149999999995	4.67972	6.94757e-4	3.4941e-6	0.00876781	1.14163e-4
chr17	28575122	28575175	16485937	0	-	0.566038	(0.53,0.59]	chr17	1347758	1	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5:ENST00000435638.5:ENST00000578590.1:ENST00000582381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	3.07752	4.549225	6.02093	1.40512e-4	5.66478e-7	0.00237235	2.7364e-5
chr7	106091804	106091904	8977619	0	-	0.46	(0.455,0.49]	chr7	687015	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1:ENST00000460770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	122	2	4.30024	4.5492	4.79816	1.71652e-7	1.68242e-9	1.00318e-5	1.66421e-7
chr2	32220292	32220372	1711929	0	+	0.45	(0.42,0.455]	chr2	167925	2	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.4231	4.54898	5.67486	0.00112541	3.42598e-6	0.0128481	1.12506e-4
chr6	163570710	163570809	7540834	0	+	0.50505	(0.49,0.53]	chr6	575649	1	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8:ENST00000361195.6:ENST00000545607.5:ENST00000537883.5:ENST00000541696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	108	2	3.60051	4.5477	5.49489	4.14236e-6	4.93197e-10	1.45416e-4	5.61212e-8
chr1	99715585	99715672	1197410	0	-	0.494253	(0.49,0.53]	chr1	116860	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000492943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	4.35855	4.547655000000001	4.73676	5.06834e-6	3.38109e-7	1.7169e-4	1.5857e-5
chr12	112022363	112022457	13094256	0	+	0.574468	(0.53,0.59]	chr12	1021471	2	CDS	CDS:UTR3:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	5	155	2	4.268	4.547155	4.82631	2.25977e-8	2.46238e-9	1.56738e-6	2.5089e-7
chr1	225406663	225406747	1528107	0	-	0.369048	(0.36,0.39]	chr1	152792	1	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	121	2	4.27551	4.54678	4.81805	2.30819e-7	6.6531e-11	1.2922e-5	9.4702e-9
chr20	52354621	52354721	17819725	0	+	0.28	[0,0.29]	chr20	1507357	79	INTRON	INTRON	LINC01524	ENSG00000234948.2	ENST00000656056.1:ENST00000667866.1:ENST00000659137.1:ENST00000656367.1:ENST00000657861.1:ENST00000655649.1:ENST00000658665.1:ENST00000653220.1:ENST00000666751.1:ENST00000662183.1:ENST00000656501.1:ENST00000663974.1:ENST00000666722.1:ENST00000663247.1:ENST00000663351.1:ENST00000655981.1:ENST00000669837.1:ENST00000655588.1:ENST00000662344.1:ENST00000667358.1:ENST00000454600.1:ENST00000662569.1:ENST00000661784.1:ENST00000666356.1:ENST00000656362.1:ENST00000660314.1:ENST00000661039.1:ENST00000660723.1:ENST00000665325.1:ENST00000655073.1:ENST00000669578.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	4.36183	4.546755	4.73168	0.00170062	3.88478e-4	0.01759	0.00534839
chr9	33921962	33922052	10633421	0	-	0.411111	(0.39,0.42]	chr9	803789	4	UTR3	UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	4.44975	4.54667	4.64359	2.67778e-6	5.75571e-7	9.19863e-5	2.76816e-5
chr17	44352014	44352092	16234931	0	+	0.653846	(0.59,1]	chr17	1314583	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	4.32406	4.54627	4.76848	2.43308e-5	1.47805e-6	6.29277e-4	5.56634e-5
chr17	77214120	77214217	16362209	0	+	0.412371	(0.39,0.42]	chr17	1329013	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6:ENST00000588488.1:ENST00000587491.5:ENST00000588721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	4.20029	4.546234999999999	4.89218	1.6518e-4	1.46608e-5	0.0029267300000000002	3.77398e-4
chr2	12742249	12742346	1645753	0	+	0.402062	(0.39,0.42]	chr2	162750	16	UTR3	UTR3:EXON_MRNA	TRIB2	ENSG00000071575.12	ENST00000381465.2:ENST00000155926.9	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.20029	4.546234999999999	4.89218	1.6518e-4	1.46608e-5	0.0029267300000000002	3.77398e-4
chr3	184172825	184172923	3948132	0	+	0.5	(0.49,0.53]	chr3	331990	22	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	4.01171	4.54616	5.08061	1.00361e-4	4.88513e-5	0.00196575	0.00100497
chr12	76047134	76047233	13423843	0	-	0.313131	(0.29,0.33]	chr12	1056597	107	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	4.2873	4.5458549999999995	4.80441	1.19649e-5	1.56681e-7	3.513e-4	8.23739e-6
chr11	117035796	117035881	12616183	0	-	0.529412	(0.49,0.53]	chr11	978515	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SIK3:AP000936.1	ENSG00000160584.17:ENSG00000234268.1	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1:ENST00000438127.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	60	2	4.19762	4.545835	4.89405	2.57983e-4	4.23721e-7	0.00419998	1.92035e-5
chr12	120211128	120211227	13579791	0	-	0.494949	(0.49,0.53]	chr12	1068824	8	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.42954	4.54563	5.66172	0.00105489	3.99372e-6	0.0123035	1.28691e-4
chr17	59655853	59655940	16295174	0	+	0.402299	(0.39,0.42]	chr17	1321628	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	3.796	4.54551	5.29502	1.68146e-5	9.19925e-7	4.64895e-4	3.73019e-5
chr1	147179126	147179225	453652	0	+	0.494949	(0.49,0.53]	chr1	45094	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-337C18.10:PDIA3P1	ENSG00000237188.5:ENSG00000180867.11	ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	4	121	2	4.08384	4.54549	5.00714	9.87028e-7	3.25707e-10	4.38926e-5	3.88482e-8
chr16	28846269	28846348	15907799	0	-	0.721519	(0.59,1]	chr16	1273914	1	UTR5	UTR5:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.36223	4.54531	5.72839	0.00203572	7.24021e-5	0.0192213	0.0015254
chr12	120498110	120498210	13116606	0	+	0.45	(0.42,0.455]	chr12	1023819	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000548342.5:ENST00000392508.2:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000552316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	4.4415	4.545135	4.64877	2.94164e-6	5.54135e-7	9.91141e-5	2.69297e-5
chr2	174719989	174720071	2221018	0	+	0.536585	(0.53,0.59]	chr2	203051	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC018890.6:H3P6	ENSG00000236449.2:ENSG00000235655.3	ENST00000442996.1:ENST00000369387.4	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	158	2	3.99943	4.545095	5.09076	2.15316e-7	2.10633e-10	1.08055e-5	2.92329e-8
chr6	135198914	135198982	7414891	0	+	0.441176	(0.42,0.455]	chr6	568314	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.42938	4.545025	6.66067	0.0045028	1.67683e-9	0.0349711	1.65962e-7
chr7	65974367	65974441	8834514	0	-	0.5	(0.49,0.53]	chr7	674586	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1:ENST00000465785.5:ENST00000479038.1:ENST00000489482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	127	2	3.04181	4.5448450000000005	6.04788	1.75203e-4	1.97464e-12	0.00306313	4.14013e-10
chr20	34581547	34581609	17947229	0	-	0.580645	(0.53,0.59]	chr20	1520043	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	3.69065	4.544825	5.399	3.04331e-4	3.02387e-5	0.00472028	6.78876e-4
chr3	100401019	100401089	4325879	0	-	0.585714	(0.53,0.59]	chr3	360621	2	UTR5	UTR5:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.69065	4.544825	5.399	3.04331e-4	3.02387e-5	0.00472028	6.78876e-4
chr7	159018731	159018829	8639480	0	+	0.540816	(0.53,0.59]	chr7	660126	7	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	3.69065	4.544825	5.399	3.04331e-4	3.02387e-5	0.00472028	6.78876e-4
chr5	43232297	43232394	6560123	0	-	0.525773	(0.49,0.53]	chr5	508331	6	EXON_PSEUDO	EXON_PSEUDO	TUBAP14	ENSG00000247763.2	ENST00000501221.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	51	2	4.28332	4.54481	4.8063	0.00338762	1.96248e-7	0.0288632	9.99962e-6
chr16	75631167	75631253	16039105	0	-	0.488372	(0.455,0.49]	chr16	1288302	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	115	2	3.424	4.544775	5.66555	3.5135e-6	8.24432e-11	1.26792e-4	1.14548e-8
chr1	21829530	21829604	890676	0	-	0.662162	(0.59,1]	chr1	92236	3	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	295	2	4.02287	4.54469	5.06651	2.59771e-7	4.07214e-9	1.42404e-5	3.56064e-7
chr15	64683680	64683780	14978110	0	+	0.48	(0.455,0.49]	chr15	1177327	21	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	4.32883	4.5446550000000006	4.76048	3.99985e-4	6.31002e-6	0.00588767	1.88287e-4
chr1	247879842	247879940	816553	0	+	0.581633	(0.53,0.59]	chr1	80729	35	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.82407	4.54449	5.26491	0.0179666	6.31437e-5	0.0918323	0.00124286
chr19	14051606	14051700	17241679	0	+	0.574468	(0.53,0.59]	chr19	1421715	1	CDS	CDS:EXON_MRNA	IL27RA	ENSG00000104998.4	ENST00000263379.4	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.82407	4.54449	5.26491	0.0179666	6.31437e-5	0.0918323	0.00124286
chr2	85268821	85268921	1923674	0	+	0.59	(0.53,0.59]	chr2	180835	346	INTRON	INTRON	TCF7L1	ENSG00000152284.5	ENST00000282111.4:ENST00000442813.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.82407	4.54449	5.26491	0.0179666	6.31437e-5	0.0918323	0.00124286
chr6	30624882	30624942	7111723	0	+	0.566667	(0.53,0.59]	chr6	544926	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	3.82407	4.54449	5.26491	0.0179666	6.31437e-5	0.0918323	0.00124286
chr7	103497819	103497872	8963222	0	-	0.584906	(0.53,0.59]	chr7	686101	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.82407	4.54449	5.26491	0.0179666	6.31437e-5	0.0918323	0.00124286
chr13	113309788	113309862	13908274	0	+	0.445946	(0.42,0.455]	chr13	1090335	3	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	4.40276	4.544345	4.68593	0.0017618	4.87807e-7	0.0180053	2.16171e-5
chr16	23467389	23467489	15894377	0	-	0.51	(0.49,0.53]	chr16	1272095	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	248	2	4.45247	4.54422	4.63597	6.46698e-11	1.73798e-11	9.2392e-9	3.11068e-9
chr12	104349612	104349711	13059150	0	+	0.353535	(0.33,0.36]	chr12	1017716	13	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.34893	4.5442149999999994	5.7395	2.22813e-4	1.26833e-6	0.00370775	4.89488e-5
chr16	70276558	70276631	15997137	0	-	0.424658	(0.42,0.455]	chr16	1284678	2	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	3.79881	4.5441650000000005	5.2895200000000004	1.65328e-4	3.1296e-9	0.0029267300000000002	2.83747e-7
chr19	3630579	3630679	17428179	0	-	0.62	(0.59,1]	chr19	1454228	5	UTR3	UTR3:EXON_MRNA	PIP5K1C	ENSG00000186111.11	ENST00000679828.1:ENST00000335312.8:ENST00000679885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.37323	4.544165	4.7151	0.00990413	0.00412279	0.061536	0.0325842
chr20	31514651	31514734	17748247	0	+	0.710843	(0.59,1]	chr20	1497827	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000498035.5:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.37323	4.544165	4.7151	0.00990413	0.00412279	0.061536	0.0325842
chr9	35704414	35704498	10639519	0	-	0.654762	(0.59,1]	chr9	805003	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000465002.1:ENST00000486788.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.37323	4.544165	4.7151	0.00990413	0.00412279	0.061536	0.0325842
chr10	73068914	73068983	11568858	0	-	0.434783	(0.42,0.455]	chr10	880499	2	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	10	228	2	4.36443	4.544074999999999	4.72372	3.47065e-9	7.21923e-12	3.37803e-7	1.30195e-9
chr1	180196357	180196454	582907	0	+	0.618557	(0.59,1]	chr1	60580	2	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.17616	4.54359	5.91102	0.00434232	2.06903e-5	0.0339139	4.99825e-4
chr10	126567802	126567902	11741392	0	-	0.52	(0.49,0.53]	chr10	895917	431	INTRON	INTRON	C10orf90	ENSG00000154493.20	ENST00000488181.3:ENST00000657225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.72252	4.543385	6.36425	0.0161474	2.32873e-8	0.0860154	1.60638e-6
chr15	40208636	40208703	14880094	0	+	0.507463	(0.49,0.53]	chr15	1168242	1	CDS	CDS:EXON_MRNA	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.72252	4.543385	6.36425	0.0161474	2.32873e-8	0.0860154	1.60638e-6
chr11	119101077	119101138	12626667	0	-	0.508197	(0.49,0.53]	chr11	979875	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000460183.1:ENST00000472016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	3.3222	4.54338	5.76456	2.96558e-5	1.57714e-6	6.71364e-4	6.4504e-5
chr5	132207795	132207884	6833610	0	-	0.561798	(0.53,0.59]	chr5	522710	2	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	4.53023	4.543315	4.5564	1.83321e-6	1.54434e-6	7.37353e-5	5.75816e-5
chr7	73573998	73574098	8854611	0	-	0.55	(0.53,0.59]	chr7	676051	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5:ENST00000465279.5:ENST00000496056.5:ENST00000469518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	4.53023	4.543315	4.5564	1.83321e-6	1.54434e-6	7.37353e-5	5.75816e-5
chrX	47584935	47585006	18687903	0	+	0.507042	(0.49,0.53]	chrX	1593559	1	CDS	CDS:UTR5:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000441738.1	protein_coding	protein_coding	protein_coding	protein_coding	4	108	2	4.27041	4.54317	4.81593	1.6567e-7	1.7452e-8	9.74137e-6	1.25644e-6
chr22	19048575	19048643	18430154	0	-	0.5	(0.49,0.53]	chr22	1570356	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.96757	4.543125	5.11868	9.66505e-5	6.21316e-5	0.00175267	0.00134149
chr17	83026575	83026675	16715075	0	-	0.61	(0.59,1]	chr17	1378983	117	INTRON	INTRON	B3GNTL1	ENSG00000175711.8	ENST00000320865.3:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.14483	4.543065	4.9413	0.0183207	0.00191468	0.0945306	0.0190905
chr20	35278906	35279002	17952406	0	-	0.614583	(0.59,1]	chr20	1520657	1	UTR3	UTR3:EXON_MRNA:INTRON	RP4-614O4.11:EIF6	ENSG00000261582.1:ENSG00000242372.9	ENST00000444717.1:ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.14483	4.543065	4.9413	0.0183207	0.00191468	0.0945306	0.0190905
chr5	139481277	139481342	6867267	0	-	0.769231	(0.59,1]	chr5	525711	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000651565.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000515507.5:ENST00000511850.1:ENST00000503838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.14483	4.543065	4.9413	0.0183207	0.00191468	0.0945306	0.0190905
chr6	67889141	67889240	7784152	0	-	0.515152	(0.49,0.53]	chr6	596229	23	EXON_LNCRNA	EXON_LNCRNA	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	3	90	2	3.89368	4.542485	5.19129	4.1076e-6	7.86941e-9	1.44512e-4	6.30554e-7
chr16	20764069	20764125	15582664	0	+	0.375	(0.36,0.39]	chr16	1234726	2	UTR5	UTR5:EXON_MRNA:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000561584.5:ENST00000564701.1:ENST00000289416.10:ENST00000440284.6	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.88071	4.54201	5.20331	2.53222e-5	4.48476e-6	6.51851e-4	1.41623e-4
chr1	89933465	89933564	349098	0	+	0.353535	(0.33,0.36]	chr1	34169	4	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	4.39837	4.541985	4.6856	3.92435e-4	3.65455e-6	0.00583618	1.19215e-4
chr6	26204856	26204956	7101592	0	+	0.57	(0.53,0.59]	chr6	542857	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C5	ENSG00000276966.2	ENST00000615164.2	protein_coding	protein_coding	protein_coding	protein_coding	9	262	2	4.31314	4.5419149999999995	4.77069	5.08177e-10	2.54899e-11	5.75817e-8	4.43311e-9
chr16	66565885	66565911	15705772	0	+	0.461538	(0.455,0.49]	chr16	1249144	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CKLF:CKLF-CMTM1	ENSG00000217555.13:ENSG00000254788.7	ENST00000534692.1:ENST00000345436.8:ENST00000351137.8:ENST00000362093.4:ENST00000264001.9:ENST00000417030.2:ENST00000527845.1:ENST00000527729.5:ENST00000532838.1:ENST00000616804.5:ENST00000615332.5:ENST00000563092.1:ENST00000529718.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.0204	4.54161	5.06282	0.00736097	1.16789e-4	0.0490627	0.0020505
chr22	29292136	29292169	18336648	0	+	0.484848	(0.455,0.49]	chr22	1558194	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.0204	4.54161	5.06282	0.00736097	1.16789e-4	0.0490627	0.0020505
chr3	100372605	100372663	4325579	0	-	0.465517	(0.455,0.49]	chr3	360571	1	CDS	CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6:ENST00000483945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.0204	4.54161	5.06282	0.00736097	1.16789e-4	0.0490627	0.0020505
chr5	154830800	154830861	6929731	0	-	0.459016	(0.455,0.49]	chr5	530598	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000517938.5:ENST00000520581.5:ENST00000521518.5:ENST00000524363.5:ENST00000522825.1:ENST00000519501.5:ENST00000519258.1:ENST00000523997.5:ENST00000518651.5:ENST00000520968.5:ENST00000517448.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.0204	4.54161	5.06282	0.00736097	1.16789e-4	0.0490627	0.0020505
chr7	107129392	107129492	8454902	0	+	0.49	(0.455,0.49]	chr7	645813	7	INTRON	INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.0204	4.54161	5.06282	0.00736097	1.16789e-4	0.0490627	0.0020505
chr7	103503158	103503230	8963279	0	-	0.375	(0.36,0.39]	chr7	686113	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	4.09565	4.5415399999999995	4.98743	8.82225e-5	2.81403e-5	0.00178337	6.42183e-4
chr12	113380744	113380842	13101656	0	+	0.622449	(0.59,1]	chr12	1022416	1	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.58269	4.5414	6.50011	0.0067313	7.17564e-7	0.0461258	3.01149e-5
chr5	33162357	33162447	5926662	0	+	0.455556	(0.455,0.49]	chr5	464307	3	EXON_PSEUDO	EXON_PSEUDO	RP11-36C20.1	ENSG00000240376.1	ENST00000467270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	74	2	3.81624	4.54138	5.26652	1.48205e-4	3.64863e-9	0.00269793	3.23821e-7
chr8	128041364	128041462	9615220	0	+	0.418367	(0.39,0.42]	chr8	728683	11	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	4.09419	4.54122	4.98825	1.62756e-4	2.95839e-5	0.00266622	7.34143e-4
chr4	55402337	55402436	4843253	0	+	0.282828	[0,0.29]	chr4	398941	27	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000511710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	3.87835	4.541195	5.20404	1.0775e-4	2.26341e-5	0.00192514	5.9266e-4
chr3	14135857	14135908	3319428	0	+	0.568627	(0.53,0.59]	chr3	292085	2	CDS	CDS:EXON_MRNA	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.39416	4.541135	5.68811	0.00126006	5.40688e-6	0.013837	1.64762e-4
chr11	61326835	61326893	12404183	0	-	0.517241	(0.49,0.53]	chr11	960256	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.73494	4.54092	5.3469	0.0189345	2.75121e-5	0.0934721	6.30607e-4
chr2	33020908	33021007	1719021	0	+	0.525253	(0.49,0.53]	chr2	168640	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.73494	4.54092	5.3469	0.0189345	2.75121e-5	0.0934721	6.30607e-4
chrX	40051820	40051916	19044896	0	-	0.28125	[0,0.29]	chrX	1618692	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	4.3527	4.540805	4.72891	9.58099e-6	2.88496e-7	2.93255e-4	1.38392e-5
chr21	39342612	39342712	18257063	0	-	0.39	(0.36,0.39]	chr21	1548152	4	UTR3	UTR3:EXON_MRNA	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	4.15388	4.54067	4.92746	5.53333e-8	6.12557e-9	3.70319e-6	5.08349e-7
chr7	101206280	101206380	8953620	0	-	0.66	(0.59,1]	chr7	684647	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	4.00624	4.540385000000001	5.07453	0.00117617	1.12192e-4	0.0132131	0.00199438
chr2	135856805	135856883	2898077	0	-	0.487179	(0.455,0.49]	chr2	258518	2	CDS	CDS:EXON_MRNA:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.10535	4.5403	4.97525	0.0064531	1.38474e-4	0.0450905	0.00254294
chrX	156008850	156008943	18924378	0	+	0.462366	(0.455,0.49]	chrX	1612721	9	INTRON	INTRON	IL9R:AJ271736.10	ENSG00000124334.17:ENSG00000270726.6	ENST00000244174.10:ENST00000369423.7:ENST00000483543.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	22	2	4.10535	4.5403	4.97525	0.0064531	1.38474e-4	0.0450905	0.00254294
chr9	14921111	14921210	10581556	0	-	0.353535	(0.33,0.36]	chr9	800961	2	EXON_LNCRNA	EXON_LNCRNA	CLCN3P1	ENSG00000232000.3	ENST00000652129.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	119	2	3.81653	4.5401299999999996	5.26373	1.87806e-7	1.45979e-11	1.07887e-5	2.44266e-9
chr19	35023235	35023289	17302763	0	+	0.574074	(0.53,0.59]	chr19	1430347	1	CDS	CDS:UTR3:EXON_MRNA	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000411896.6:ENST00000598118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	3.61856	4.5401	5.46164	0.0303021	2.11519e-5	0.129773	5.06522e-4
chr11	85958946	85959045	12525719	0	-	0.373737	(0.36,0.39]	chr11	972155	19	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	132	2	4.29429	4.53986	4.78543	1.21972e-8	9.35884e-11	1.00619e-6	1.28548e-8
chr19	45688386	45688438	17590107	0	-	0.538462	(0.53,0.59]	chr19	1480435	1	CDS	CDS:UTR5:EXON_MRNA	SNRPD2	ENSG00000125743.11	ENST00000342669.8:ENST00000585392.2:ENST00000587367.5:ENST00000588301.5:ENST00000391932.7:ENST00000588599.5:ENST00000590212.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.38538	4.539745	5.69411	1.18366e-4	5.01544e-6	0.00207204	1.7067e-4
chr1	155137646	155137722	483030	0	+	0.578947	(0.53,0.59]	chr1	50522	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SLC50A1	ENSG00000169241.19	ENST00000484157.5:ENST00000490770.5:ENST00000475824.6:ENST00000368401.6:ENST00000622581.4:ENST00000490276.5:ENST00000303343.12:ENST00000368404.9:ENST00000650403.1:ENST00000368405.7:ENST00000488609.5:ENST00000484027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.80806	4.539465	5.27087	1.65022e-4	5.9416e-5	0.00269147	0.00130151
chr15	41280188	41280288	14885233	0	+	0.43	(0.42,0.455]	chr15	1169243	9	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.79103	4.539429999999999	5.28783	2.17539e-5	8.61353e-6	5.73422e-4	2.43348e-4
chr11	119299681	119299781	12163745	0	+	0.47	(0.455,0.49]	chr11	938079	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.20189	4.53911	4.87633	0.00397662	2.95855e-4	0.0322851	0.00432147
chr22	24687989	24688087	18315090	0	+	0.469388	(0.455,0.49]	chr22	1556418	12	EXON_PSEUDO	EXON_PSEUDO	AP000357.4	ENSG00000224334.1	ENST00000409926.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.20189	4.53911	4.87633	0.00397662	2.95855e-4	0.0322851	0.00432147
chr4	93155035	93155135	4975355	0	+	0.47	(0.455,0.49]	chr4	407063	429	INTRON	INTRON	GRID2	ENSG00000152208.13	ENST00000282020.9:ENST00000505687.5:ENST00000510992.5:ENST00000502699.5:ENST00000611049.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.20189	4.53911	4.87633	0.00397662	2.95855e-4	0.0322851	0.00432147
chr5	138930563	138930654	6248057	0	+	0.472527	(0.455,0.49]	chr5	486835	2	CDS	CDS:UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000521387.1:ENST00000520520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.20189	4.53911	4.87633	0.00397662	2.95855e-4	0.0322851	0.00432147
chr7	10452572	10452669	8129143	0	+	0.463918	(0.455,0.49]	chr7	621313	14	EXON_PSEUDO	EXON_PSEUDO	HSPA8P8	ENSG00000229091.3	ENST00000419827.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.20189	4.53911	4.87633	0.00397662	2.95855e-4	0.0322851	0.00432147
chr12	119680824	119680924	13114520	0	+	0.36	(0.33,0.36]	chr12	1023559	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	91	2	3.51724	4.538995	5.56075	2.5465e-6	1.57755e-10	9.68313e-5	2.02193e-8
chr6	26026940	26027040	7646920	0	-	0.58	(0.53,0.59]	chr6	582482	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C2	ENSG00000278705.2	ENST00000377745.4	protein_coding	protein_coding	protein_coding	protein_coding	11	256	2	3.46236	4.538765	5.61517	4.73435e-8	1.1765e-12	3.25396e-6	2.60115e-10
chr1	27666380	27666475	910651	0	-	0.557895	(0.53,0.59]	chr1	95194	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IFI6	ENSG00000126709.16	ENST00000361157.11:ENST00000339145.8:ENST00000679644.1:ENST00000362020.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.03453	4.538755	5.04298	1.91383e-4	4.6e-5	0.0032874	9.56296e-4
chr1	226385503	226385591	1533279	0	-	0.545455	(0.53,0.59]	chr1	153490	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	4.03453	4.538755	5.04298	1.91383e-4	4.6e-5	0.0032874	9.56296e-4
chr8	18062278	18062350	9732861	0	-	0.416667	(0.39,0.42]	chr8	736303	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000517409.2:ENST00000519545.6:ENST00000636719.1:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	4.53831	4.53845	4.53859	1.40716e-6	1.30829e-6	5.53834e-5	5.32869e-5
chr8	96235530	96235546	9962142	0	-	0.375	(0.36,0.39]	chr8	751588	1	UTR5	UTR5:EXON_MRNA	UQCRB	ENSG00000156467.10	ENST00000287022.10:ENST00000517603.5:ENST00000521036.5:ENST00000518876.1:ENST00000518406.5:ENST00000523920.1:ENST00000519322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	126	2	4.13529	4.538445	4.9416	7.54264e-7	1.7906e-11	3.49213e-5	2.93842e-9
chr1	167553387	167553471	1347953	0	-	0.714286	(0.59,1]	chr1	138011	1	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	8	364	2	4.18935	4.53842	4.88749	2.19429e-8	8.31788e-9	1.66181e-6	6.61792e-7
chr12	54231575	54231675	13342842	0	-	0.52	(0.49,0.53]	chr12	1049602	2	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	39	2	3.7546	4.538195	5.32179	2.09468e-4	2.63311e-5	0.00327655	6.73425e-4
chr1	32773878	32773978	130813	0	+	0.55	(0.53,0.59]	chr1	16163	11	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.94125	4.53817	6.13509	0.0012261800000000001	2.62487e-7	0.0135648	1.27527e-5
chr15	29700915	29701012	15183781	0	-	0.443299	(0.42,0.455]	chr15	1195074	17	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	4.39641	4.53811	4.67981	5.38444e-4	4.03242e-6	0.00744072	1.29746e-4
chr19	40627259	40627355	17330517	0	+	0.708333	(0.59,1]	chr19	1436066	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000595118.5:ENST00000318809.11:ENST00000599225.1:ENST00000598166.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	98	2	3.2313	4.53809	5.84488	9.87985e-5	4.10826e-5	0.00178726	9.68079e-4
chr20	50569570	50569669	17816071	0	+	0.444444	(0.42,0.455]	chr20	1507122	7	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.19078	4.53793	5.88508	0.00310864	8.1674e-7	0.0274272	3.36299e-5
chr18	32075884	32075981	17062034	0	-	0.43299	(0.42,0.455]	chr18	1402294	1	EXON_PSEUDO	EXON_PSEUDO	RP11-53I6.1	ENSG00000214917.3	ENST00000484967.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	44	2	4.52766	4.53779	4.54792	9.66045e-4	1.58778e-6	0.0115185	5.89925e-5
chr1	147179522	147179622	453656	0	+	0.39	(0.36,0.39]	chr1	45094	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-337C18.10:PDIA3P1	ENSG00000237188.5:ENSG00000180867.11	ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	1	42	2	4.42503	4.537565	4.6501	0.00133228	5.80078e-7	0.0144372	2.50873e-5
chr7	44801286	44801303	8261665	0	+	0.529412	(0.49,0.53]	chr7	629475	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	3.68088	4.537435	5.39399	1.82756e-5	1.71804e-5	4.72485e-4	4.52458e-4
chr11	60897845	60897898	12402768	0	-	0.433962	(0.42,0.455]	chr11	959891	1	CDS	CDS:EXON_MRNA:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1:ENST00000539960.1:ENST00000539180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.39468	4.537245	4.67981	0.00240483	5.38444e-4	0.0217482	0.00744072
chr13	41235993	41236092	13989619	0	-	0.424242	(0.42,0.455]	chr13	1097211	16	INTRON	INTRON	MTRF1	ENSG00000120662.16	ENST00000379480.9:ENST00000379477.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.39468	4.537245	4.67981	0.00240483	5.38444e-4	0.0217482	0.00744072
chr2	235511954	235512054	2443694	0	+	0.45	(0.42,0.455]	chr2	220916	45	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.39468	4.537245	4.67981	0.00240483	5.38444e-4	0.0217482	0.00744072
chr1	668394	668494	823715	0	-	0.55	(0.53,0.59]	chr1	81486	354	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	24	2	4.30195	4.537084999999999	4.77222	0.00421989	6.67251e-4	0.0328662	0.00867533
chr7	16462805	16462884	8702274	0	-	0.582278	(0.53,0.59]	chr7	664605	3	CDS	CDS:EXON_MRNA:INTRON	CRPPA:SOSTDC1	ENSG00000214960.11:ENSG00000171243.8	ENST00000675257.1:ENST00000674759.1:ENST00000307068.5:ENST00000396652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.30195	4.537084999999999	4.77222	0.00421989	6.67251e-4	0.0328662	0.00867533
chr11	6618758	6618858	12249980	0	-	0.56	(0.53,0.59]	chr11	946869	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6:ENST00000528917.1:ENST00000531754.2:ENST00000528657.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	3.43342	4.537075	5.64073	8.93729e-5	7.00135e-6	0.00165837	2.25852e-4
chr1	21822243	21822340	890586	0	-	0.536082	(0.53,0.59]	chr1	92196	1	UTR3	UTR3:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.30776	4.537045	4.76633	0.00407289	6.98999e-4	0.0324137	0.00846751
chr19	43772103	43772135	17580601	0	-	0.5625	(0.53,0.59]	chr19	1479113	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000648053.1:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.30776	4.537045	4.76633	0.00407289	6.98999e-4	0.0324137	0.00846751
chr8	38209206	38209306	9292316	0	+	0.54	(0.53,0.59]	chr8	710688	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BAG4	ENSG00000156735.11	ENST00000432471.6:ENST00000287322.5:ENST00000521311.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.30776	4.537045	4.76633	0.00407289	6.98999e-4	0.0324137	0.00846751
chr9	19050130	19050222	10214661	0	+	0.532609	(0.53,0.59]	chr9	767644	5	CDS	CDS:EXON_MRNA	RRAGA	ENSG00000155876.6	ENST00000380527.3	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.30776	4.537045	4.76633	0.00407289	6.98999e-4	0.0324137	0.00846751
chr1	113958215	113958291	418046	0	+	0.447368	(0.42,0.455]	chr1	41150	3	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.52594	4.53693	4.54792	0.00144145	9.66045e-4	0.0147046	0.0115185
chr15	89195621	89195720	15093444	0	+	0.444444	(0.42,0.455]	chr15	1187100	3	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.52594	4.53693	4.54792	0.00144145	9.66045e-4	0.0147046	0.0115185
chr16	18426680	18426731	15875522	0	-	0.431373	(0.42,0.455]	chr16	1269028	2	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000620440.4:ENST00000381474.7:ENST00000564991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.52594	4.53693	4.54792	0.00144145	9.66045e-4	0.0147046	0.0115185
chr19	55662086	55662169	17397222	0	+	0.445783	(0.42,0.455]	chr19	1448905	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.52594	4.53693	4.54792	0.00144145	9.66045e-4	0.0147046	0.0115185
chr20	17660233	17660320	17916326	0	-	0.425287	(0.42,0.455]	chr20	1516287	4	CDS	CDS:EXON_MRNA:INTRON	RRBP1	ENSG00000125844.16	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000398782.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.52594	4.53693	4.54792	0.00144145	9.66045e-4	0.0147046	0.0115185
chr4	75829521	75829589	5473709	0	-	0.426471	(0.42,0.455]	chr4	438505	2	EXON_SMALL	EXON_SMALL	RNU2-16P	ENSG00000222644.1	ENST00000410712.1	snRNA	snRNA	snRNA	snRNA	0	21	2	4.52594	4.53693	4.54792	0.00144145	9.66045e-4	0.0147046	0.0115185
chr22	21644075	21644175	18303285	0	+	0.56	(0.53,0.59]	chr22	1554236	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	3.62204	4.53688	5.45172	4.3021e-4	1.11728e-9	0.00620274	1.15291e-7
chrX	47210025	47210123	18686867	0	+	0.622449	(0.59,1]	chrX	1593245	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.61023	4.536465	5.4627	7.25496e-4	2.43542e-4	0.00869086	0.00399705
chr12	119686168	119686263	13576763	0	-	0.378947	(0.36,0.39]	chr12	1068230	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.24194	4.53623	4.83052	0.00276729	3.15227e-4	0.0247437	0.00452711
chr13	49663125	49663195	14019796	0	-	0.385714	(0.36,0.39]	chr13	1099608	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.24194	4.53623	4.83052	0.00276729	3.15227e-4	0.0247437	0.00452711
chr6	13787325	13787421	7605986	0	-	0.375	(0.36,0.39]	chr6	580084	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MCUR1	ENSG00000050393.11	ENST00000379170.8:ENST00000607303.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.24194	4.53623	4.83052	0.00276729	3.15227e-4	0.0247437	0.00452711
chr9	83974568	83974589	10712938	0	-	0.380952	(0.36,0.39]	chr9	810521	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000376256.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.24194	4.53623	4.83052	0.00276729	3.15227e-4	0.0247437	0.00452711
chr10	996105	996173	10898649	0	+	0.470588	(0.455,0.49]	chr10	829330	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	4.00069	4.536205	5.07172	8.3067e-5	5.13615e-5	0.00171126	0.00104999
chr16	12732425	12732525	15859223	0	-	0.52	(0.49,0.53]	chr16	1267059	270	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.51312	4.536205	4.55929	0.00156636	0.00116196	0.0156889	0.0130851
chr2	135866562	135866645	2898181	0	-	0.506024	(0.49,0.53]	chr2	258552	1	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.51312	4.536205	4.55929	0.00156636	0.00116196	0.0156889	0.0130851
chr3	49098352	49098416	4172429	0	-	0.5	(0.49,0.53]	chr3	350339	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000497635.5:ENST00000494984.5:ENST00000414533.5:ENST00000634473.1:ENST00000464962.6:ENST00000634336.1:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000466179.2:ENST00000637543.1:ENST00000637908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.51312	4.536205	4.55929	0.00156636	0.00116196	0.0156889	0.0130851
chr15	72752773	72752857	15370886	0	-	0.52381	(0.49,0.53]	chr15	1214568	5	CDS	CDS:UTR3:EXON_MRNA	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000569693.5:ENST00000562621.1:ENST00000563907.5:ENST00000569517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	4.17834	4.536195	4.89405	2.57983e-4	1.74561e-5	0.00419998	4.38078e-4
chr11	78073083	78073141	12477578	0	-	0.362069	(0.36,0.39]	chr11	970659	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1:ENST00000528164.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.59573	4.53611	5.47649	3.19976e-5	4.3709e-6	7.1032e-4	1.52262e-4
chr19	9774774	9774867	17223386	0	+	0.569892	(0.53,0.59]	chr19	1418074	4	EXON_PSEUDO	EXON_PSEUDO	UBE2L4	ENSG00000267741.1	ENST00000587688.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	48	2	4.40251	4.535935	4.66936	0.00103174	4.48447e-6	0.0121443	1.41623e-4
chr16	262158	262225	15481062	0	+	0.597015	(0.59,1]	chr16	1224282	2	CDS	CDS:EXON_MRNA	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000301678.7:ENST00000600536.1:ENST00000468354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	3.84557	4.53553	5.22549	0.0410704	5.13843e-4	0.163285	0.00665221
chr19	35266835	35266901	17304103	0	+	0.590909	(0.59,1]	chr19	1430694	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LSR	ENSG00000105699.17	ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000597446.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	3.84557	4.53553	5.22549	0.0410704	5.13843e-4	0.163285	0.00665221
chr4	54100253	54100344	4838892	0	+	0.681319	(0.59,1]	chr4	398531	2	UTR5	UTR5:EXON_MRNA:INTRON	RP11-231C18.3:GSX2	ENSG00000282278.1:ENSG00000180613.11	ENST00000507166.5:ENST00000507839.1:ENST00000326902.7:ENST00000503800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	3.84557	4.53553	5.22549	0.0410704	5.13843e-4	0.163285	0.00665221
chr5	74689327	74689400	6036349	0	+	0.39726	(0.39,0.42]	chr5	473443	1	CDS	CDS:UTR5:EXON_MRNA	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000513079.5:ENST00000515528.1:ENST00000261416.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.93996	4.535425	5.13089	0.00841622	1.17016e-8	0.054565	8.85759e-7
chr15	84680712	84680772	15420968	0	-	0.466667	(0.455,0.49]	chr15	1219627	1	CDS	CDS:EXON_MRNA:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	4.53206	4.535410000000001	4.53876	1.31171e-6	2.46504e-8	5.53834e-5	1.68927e-6
chr7	139340719	139340819	8565467	0	+	0.49	(0.455,0.49]	chr7	653589	1	SS5_PROX	SS5_PROX:INTRON	FMC1:LUC7L2	ENSG00000164898.13:ENSG00000146963.18	ENST00000468383.5:ENST00000541170.7:ENST00000481123.1:ENST00000482181.1:ENST00000488886.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1115	23704	2	4.32468	4.5352250000000005	4.74577	1e-12	1e-12	2.46312e-10	2.25522e-10
chr10	124405435	124405499	11729337	0	-	0.484375	(0.455,0.49]	chr10	895071	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000483711.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	3.96464	4.534585	5.10453	6.27408e-5	1.5372e-8	0.00135074	1.1222e-6
chr3	41225492	41225572	3432472	0	+	0.5	(0.49,0.53]	chr3	298538	3	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.8233	4.5345450000000005	5.24579	1.44192e-4	4.073e-5	0.00242438	9.64741e-4
chr12	74539791	74539889	12961057	0	+	0.5	(0.49,0.53]	chr12	1010219	15	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.52514	4.53452	5.5439	4.98361e-5	8.44877e-6	0.0011306	2.39255e-4
chr1	43360808	43360884	164220	0	+	0.565789	(0.53,0.59]	chr1	20859	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000478882.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.94515	4.5340799999999994	5.12301	1.2852e-4	3.18429e-6	0.00241206	1.06148e-4
chr16	74471172	74471229	16031193	0	-	0.508772	(0.49,0.53]	chr16	1287305	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.12263	4.53313	4.94363	0.00591451	2.3417e-4	0.0427941	0.00355764
chr17	82251452	82251527	16712213	0	-	0.52	(0.49,0.53]	chr17	1378483	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1D	ENSG00000141551.14	ENST00000398519.9:ENST00000314028.10:ENST00000581241.5:ENST00000584377.5:ENST00000392334.6:ENST00000269361.11:ENST00000403276.7:ENST00000581108.5:ENST00000582844.5:ENST00000578904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.12263	4.53313	4.94363	0.00591451	2.3417e-4	0.0427941	0.00355764
chr7	144647482	144647582	9120718	0	-	0.5	(0.49,0.53]	chr7	696680	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	TPK1:EEF1A1P10	ENSG00000196511.14:ENSG00000243746.1	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5:ENST00000475365.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	23	2	4.12263	4.53313	4.94363	0.00591451	2.3417e-4	0.0427941	0.00355764
chrX	154442771	154442870	18918002	0	+	0.494949	(0.49,0.53]	chrX	1611973	2	UTR3	UTR3:EXON_MRNA	GDI1	ENSG00000203879.12	ENST00000447750.7:ENST00000491154.1:ENST00000468483.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.12263	4.53313	4.94363	0.00591451	2.3417e-4	0.0427941	0.00355764
chr16	29663919	29664010	15626148	0	+	0.538462	(0.53,0.59]	chr16	1239195	2	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	207	2	4.28137	4.532735	4.7841	3.02882e-9	1.90979e-10	2.76045e-7	2.67361e-8
chr8	18069791	18069865	9732942	0	-	0.337838	(0.33,0.36]	chr8	736319	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000637857.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1:ENST00000637792.1:ENST00000637898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	94	2	4.09333	4.532445	4.97156	4.09248e-8	1.0366e-8	2.87331e-6	8.00289e-7
chr17	42495110	42495188	16228539	0	+	0.397436	(0.39,0.42]	chr17	1312943	2	CDS	CDS:EXON_MRNA:PRIMIRNA	ATP6V0A1:MIR548AT	ENSG00000033627.17:ENSG00000264314.1	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000578714.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	54	2	3.13927	4.532425	5.92558	9.67557e-5	2.00458e-7	0.00175376	1.13771e-5
chr1	111159453	111159527	405957	0	+	0.418919	(0.39,0.42]	chr1	39877	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000480324.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	4.14886	4.532215	4.91557	0.00415881	7.36997e-8	0.0325842	4.29759e-6
chr11	32927212	32927269	11898996	0	+	0.526316	(0.49,0.53]	chr11	908988	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5:ENST00000528155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	3.51981	4.531855	5.5439	6.88328e-4	8.44877e-6	0.00876781	2.39255e-4
chr2	85326801	85326899	2770181	0	-	0.510204	(0.49,0.53]	chr2	245656	4	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	4.25722	4.53176	4.8063	1.00699e-5	1.96248e-7	3.03291e-4	9.99962e-6
chr4	99881894	99881993	5550920	0	-	0.333333	(0.33,0.36]	chr4	443610	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LAMTOR3	ENSG00000109270.13	ENST00000499666.7:ENST00000226522.8:ENST00000515100.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	4.23145	4.531715	4.83198	1.88689e-4	1.158e-5	0.0032588	3.09867e-4
chr12	6270253	6270339	13185938	0	-	0.453488	(0.42,0.455]	chr12	1031904	2	EXON_PSEUDO	EXON_PSEUDO	ATP5MFP5	ENSG00000256103.2	ENST00000537967.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	3.8515	4.531685	5.21187	0.0119089	5.5797e-5	0.0686664	0.00112719
chr5	134703845	134703932	6230634	0	+	0.425287	(0.42,0.455]	chr5	485241	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.8515	4.531685	5.21187	0.0119089	5.5797e-5	0.0686664	0.00112719
chr5	138189827	138189906	6860866	0	-	0.43038	(0.42,0.455]	chr5	524911	1	CDS	CDS:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000464806.1:ENST00000475021.1:ENST00000471692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.8515	4.531685	5.21187	0.0119089	5.5797e-5	0.0686664	0.00112719
chr7	151014420	151014504	8617028	0	+	0.440476	(0.42,0.455]	chr7	658162	4	UTR3	UTR3:EXON_MRNA	NOS3	ENSG00000164867.11	ENST00000297494.8:ENST00000461406.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.8515	4.531685	5.21187	0.0119089	5.5797e-5	0.0686664	0.00112719
chr6	3153962	3154058	7571338	0	-	0.645833	(0.59,1]	chr6	577786	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBB2A	ENSG00000137267.7	ENST00000679400.1:ENST00000333628.4:ENST00000679907.1:ENST00000680036.1:ENST00000680967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	82	2	2.85681	4.531445	6.20608	0.00235278	4.1102e-6	0.0222204	1.31763e-4
chr16	11243152	11243252	15542353	0	+	0.47	(0.455,0.49]	chr16	1231051	6	EXON_PSEUDO	EXON_PSEUDO	HNRNPCP4	ENSG00000263179.1	ENST00000571636.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	44	2	4.50805	4.5314049999999995	4.55476	0.00122223	1.27404e-6	0.0135383	4.90986e-5
chr8	30353227	30353324	9253465	0	+	0.556701	(0.53,0.59]	chr8	708964	15	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	199	2	3.91771	4.531225	5.14474	4.09029e-7	5.44742e-12	2.08023e-5	1.01631e-9
chr11	112094970	112095061	12136343	0	+	0.362637	(0.36,0.39]	chr11	934907	1	UTR3	UTR3:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.0322	4.5312	5.0302	0.00588589	1.15931e-4	0.0427941	0.00204552
chrX	154399871	154399941	18917604	0	+	0.614286	(0.59,1]	chrX	1611817	2	CDS	CDS:EXON_MRNA	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	39	1814	2	4.50643	4.530984999999999	4.55554	1.73123e-11	4.60565e-12	3.10126e-9	8.76133e-10
chr19	48908665	48908764	17367703	0	+	0.515152	(0.49,0.53]	chr19	1442121	24	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.38192	4.53082	4.67972	0.00259709	6.94757e-4	0.0229695	0.00876781
chr20	50584366	50584463	17816226	0	+	0.443299	(0.42,0.455]	chr20	1507152	18	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	4.45249	4.530725	4.60896	2.45559e-6	8.72604e-7	9.39733e-5	3.55816e-5
chr16	10537927	10538000	15850261	0	-	0.520548	(0.49,0.53]	chr16	1265820	1	CDS	CDS:EXON_MRNA	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000536829.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.4279	4.53064	4.63338	0.00196987	9.56909e-4	0.0193972	0.010724
chr16	14435791	14435883	15861056	0	-	0.521739	(0.49,0.53]	chr16	1267182	2	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.4279	4.53064	4.63338	0.00196987	9.56909e-4	0.0193972	0.010724
chr3	123124065	123124157	3706698	0	+	0.51087	(0.49,0.53]	chr3	316823	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000472319.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.4279	4.53064	4.63338	0.00196987	9.56909e-4	0.0193972	0.010724
chrX	129823678	129823757	19219841	0	-	0.518987	(0.49,0.53]	chrX	1633234	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2:ENST00000491039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.4279	4.53064	4.63338	0.00196987	9.56909e-4	0.0193972	0.010724
chr3	179618443	179618521	3928858	0	+	0.371795	(0.36,0.39]	chr3	330257	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5:ENST00000491054.1:ENST00000471112.1:ENST00000476587.1:ENST00000493716.1:ENST00000680692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	4.47367	4.53057	4.58747	6.55819e-4	2.17232e-9	0.00860229	2.07131e-7
chr16	15363658	15363758	15864867	0	-	0.52	(0.49,0.53]	chr16	1267827	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NPIPA5	ENSG00000183793.14	ENST00000360151.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.94177	4.530225	5.11868	0.0104929	9.66505e-5	0.063428	0.00175267
chr1	193084578	193084631	631162	0	+	0.301887	(0.29,0.33]	chr1	64145	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.24387	4.530025	4.81618	0.00263476	2.74489e-4	0.0239118	0.00406677
chr11	112051233	112051291	12135993	0	+	0.327586	(0.29,0.33]	chr11	934816	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1:ENST00000680154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.24387	4.530025	4.81618	0.00263476	2.74489e-4	0.0239118	0.00406677
chr15	78497238	78497338	15040120	0	+	0.32	(0.29,0.33]	chr15	1183136	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000558570.5:ENST00000559091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.24387	4.530025	4.81618	0.00263476	2.74489e-4	0.0239118	0.00406677
chr1	1040808	1040880	2257	0	+	0.75	(0.59,1]	chr1	475	3	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.2353	4.529275	4.82325	0.0165254	0.002381	0.0873033	0.0216895
chr1	31629958	31630051	919021	0	-	0.623656	(0.59,1]	chr1	96296	2	UTR3	UTR3:EXON_MRNA	PEF1	ENSG00000162517.13	ENST00000373703.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.2353	4.529275	4.82325	0.0165254	0.002381	0.0873033	0.0216895
chr19	47381488	47381571	17361949	0	+	0.60241	(0.59,1]	chr19	1441209	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX34	ENSG00000134815.19	ENST00000328771.9:ENST00000486327.6:ENST00000460681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.2353	4.529275	4.82325	0.0165254	0.002381	0.0873033	0.0216895
chr12	38320636	38320731	12822966	0	+	0.326316	(0.29,0.33]	chr12	995728	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10B	ENSG00000175548.9	ENST00000551464.1:ENST00000308742.9:ENST00000548240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.41812	4.52893	4.63974	0.00162106	4.81181e-4	0.0161179	0.00677016
chr6	151468628	151468723	7490673	0	+	0.305263	(0.29,0.33]	chr6	572409	4	CDS	CDS:EXON_MRNA	ARMT1	ENSG00000146476.11	ENST00000545879.5:ENST00000367294.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.41812	4.52893	4.63974	0.00162106	4.81181e-4	0.0161179	0.00677016
chr7	103519322	103519419	8963444	0	-	0.463918	(0.455,0.49]	chr7	686130	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	4.20189	4.528779999999999	4.85567	0.00397662	1.2429e-7	0.0322851	6.73437e-6
chr21	44805913	44806012	18277269	0	-	0.393939	(0.39,0.42]	chr21	1550219	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	3.76249	4.528755	5.29502	1.68146e-5	1.04037e-5	4.64895e-4	2.85665e-4
chr17	63578548	63578628	16317432	0	+	0.5375	(0.53,0.59]	chr17	1323641	2	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	3.6522	4.528585	5.40497	2.83308e-5	2.31822e-5	7.12614e-4	5.49766e-4
chr7	10933635	10933692	8678211	0	-	0.403509	(0.39,0.42]	chr7	663709	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000482299.1:ENST00000470761.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	189	2	4.24278	4.5283999999999995	4.81402	1.6403e-10	5.07894e-11	2.097e-8	8.16041e-9
chr5	146463631	146463712	6281093	0	+	0.580247	(0.53,0.59]	chr5	489543	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000513298.5:ENST00000510724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	76	2	3.12109	4.527975	5.93486	3.24817e-5	1.0295e-6	7.18962e-4	4.52516e-5
chr10	91952066	91952163	11189899	0	+	0.350515	(0.33,0.36]	chr10	850744	1	INTRON	INTRON	BTAF1	ENSG00000095564.14	ENST00000265990.11:ENST00000544642.2	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.32157	4.52768	5.73379	1.77615e-4	5.95199e-7	0.00287736	2.84227e-5
chr11	119302738	119302836	12163776	0	+	0.387755	(0.36,0.39]	chr11	938080	31	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.46714	4.527305	4.58747	0.00155822	6.55819e-4	0.0156889	0.00860229
chr4	22727662	22727758	5356441	0	-	0.375	(0.36,0.39]	chr4	429643	4	EXON_PSEUDO	EXON_PSEUDO	CDC42P6	ENSG00000237350.1	ENST00000421246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.46714	4.527305	4.58747	0.00155822	6.55819e-4	0.0156889	0.00860229
chr6	2835939	2836023	7570234	0	-	0.380952	(0.36,0.39]	chr6	577595	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5:ENST00000490094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.46714	4.527305	4.58747	0.00155822	6.55819e-4	0.0156889	0.00860229
chr5	141551799	141551898	6875414	0	-	0.353535	(0.33,0.36]	chr5	526422	9	INTRON	INTRON	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5:ENST00000491754.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.36878	4.52719	4.6856	0.0021194	3.92435e-4	0.0198008	0.00583618
chr2	135911138	135911210	2898351	0	-	0.472222	(0.455,0.49]	chr2	258587	1	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000478212.5:ENST00000489964.5:ENST00000422708.3:ENST00000491481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	76	2	3.26292	4.527175	5.79143	3.92078e-6	8.96581e-7	1.26727e-4	4.03386e-5
chr4	39974146	39974242	4802079	0	+	0.53125	(0.53,0.59]	chr4	396212	1	EXON_PSEUDO	EXON_PSEUDO	PABPC1P1	ENSG00000231707.4	ENST00000506347.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	106	2	4.37211	4.526885	4.68166	5.43864e-6	9.1394e-9	1.81467e-4	7.18147e-7
chr5	138557927	138557986	6862375	0	-	0.440678	(0.42,0.455]	chr5	525199	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000512328.1:ENST00000507115.6:ENST00000507097.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	4.22524	4.526885	4.82853	1.2079e-5	1.59873e-7	3.52389e-4	8.38121e-6
chr1	240636688	240636779	1571175	0	-	0.527473	(0.49,0.53]	chr1	157368	2	EXON_PSEUDO	EXON_PSEUDO	RP11-467I20.3	ENSG00000228844.1	ENST00000420757.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	47	2	4.4279	4.526820000000001	4.62574	0.00196987	7.86745e-7	0.0193972	3.25904e-5
chr18	46089337	46089428	17103855	0	-	0.56044	(0.53,0.59]	chr18	1404368	4	SS5_PROX	SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	118	2	4.02196	4.526619999999999	5.03128	1.79284e-7	4.02505e-8	9.26652e-6	2.83072e-6
chr11	62765208	62765232	11973884	0	+	0.416667	(0.39,0.42]	chr11	917896	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	POLR2G	ENSG00000168002.12	ENST00000533442.5:ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.28128	4.5261700000000005	4.77106	0.00342611	3.03764e-4	0.0283456	0.00472028
chr1	21824120	21824204	890609	0	-	0.666667	(0.59,1]	chr1	92204	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000481644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	81	2	3.25434	4.52594	5.79754	4.06738e-4	3.712e-5	0.00598202	8.06532e-4
chr12	69587504	69587560	12943416	0	+	0.428571	(0.42,0.455]	chr12	1008964	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000546859.5:ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000550455.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.62315	4.525919999999999	5.42869	4.234e-4	1.60756e-5	0.00613535	4.07445e-4
chr21	18858176	18858276	18064952	0	+	0.49	(0.455,0.49]	chr21	1532462	5	EXON_PSEUDO	EXON_PSEUDO	PPIAP22	ENSG00000198618.5	ENST00000358455.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	122	2	3.34461	4.52586	5.70711	2.06954e-6	3.58465e-11	7.35184e-5	6.02848e-9
chr4	38697263	38697361	4796659	0	+	0.479592	(0.455,0.49]	chr4	395582	1	UTR3	UTR3:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	3.20468	4.525845	5.84701	6.38295e-5	5.98588e-7	0.00125289	2.85128e-5
chr1	205715798	205715897	1462013	0	-	0.484848	(0.455,0.49]	chr1	147460	31	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.3605	4.525774999999999	5.69105	0.00147278	2.83777e-6	0.0157578	9.62519e-5
chr12	115961065	115961165	13554952	0	-	0.49	(0.455,0.49]	chr12	1066994	26	UTR3	UTR3:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648762.1:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000649937.1:ENST00000548784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.3605	4.525774999999999	5.69105	0.00147278	2.83777e-6	0.0157578	9.62519e-5
chr7	130192755	130192823	9063417	0	-	0.588235	(0.53,0.59]	chr7	692185	3	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	156	2	4.04671	4.525645	5.00458	5.00256e-8	6.26392e-9	3.40358e-6	5.16133e-7
chr17	17816957	17817046	16465724	0	-	0.674157	(0.59,1]	chr17	1344711	1	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000471445.5:ENST00000469356.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	3.54043	4.525475	5.51052	0.00019737500000000001	8.66186e-5	0.00336487	0.00161378
chr18	31541192	31541253	16809108	0	+	0.52459	(0.49,0.53]	chr18	1386468	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.96757	4.525475	5.08338	6.21316e-5	2.00613e-8	0.00134149	1.40889e-6
chr11	32927156	32927212	11898995	0	+	0.428571	(0.42,0.455]	chr11	908988	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5:ENST00000528155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	4.25028	4.52546	4.80064	0.00406761	3.0479e-4	0.032143	0.00472028
chr12	57746622	57746720	12904477	0	+	0.408163	(0.39,0.42]	chr12	1005950	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TSPAN31	ENSG00000135452.10	ENST00000553221.5:ENST00000547992.5:ENST00000257910.8:ENST00000553089.5:ENST00000552816.5:ENST00000549052.5:ENST00000546993.5:ENST00000547472.5:ENST00000548167.1:ENST00000550791.1:ENST00000546922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.49324	4.525235	4.55723	0.00117753	0.00108192	0.0127276	0.0124943
chr2	231083566	231083664	2423308	0	+	0.479592	(0.455,0.49]	chr2	218338	1	CDS	CDS:UTR3:EXON_MRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.41041	4.525095	4.63978	0.00218771	6.94032e-4	0.0202707	0.00876781
chr7	99458189	99458257	8947104	0	-	0.352941	(0.33,0.36]	chr7	683032	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000491560.1:ENST00000488775.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	4.1284	4.5249299999999995	4.92146	0.00407303	6.09565e-8	0.0324137	3.65657e-6
chr1	160279258	160279355	1328563	0	-	0.474227	(0.455,0.49]	chr1	135912	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-574F21.3:PEX19	ENSG00000258465.8:ENSG00000162735.19	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000368072.10:ENST00000472750.5:ENST00000467711.5:ENST00000532508.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.50805	4.524895	4.54174	0.00130137	0.00122223	0.0136936	0.0135383
chr1	161684959	161685057	1334193	0	-	0.479592	(0.455,0.49]	chr1	137045	14	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL31P11	ENSG00000213075.7	ENST00000426558.1:ENST00000454082.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	21	2	4.50805	4.524895	4.54174	0.00130137	0.00122223	0.0136936	0.0135383
chr10	68691714	68691814	11091120	0	+	0.47	(0.455,0.49]	chr10	842934	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.50805	4.524895	4.54174	0.00130137	0.00122223	0.0136936	0.0135383
chr11	63631125	63631211	12414831	0	-	0.488372	(0.455,0.49]	chr11	962199	2	CDS	CDS:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.50805	4.524895	4.54174	0.00130137	0.00122223	0.0136936	0.0135383
chr7	135577871	135577947	8552595	0	+	0.473684	(0.455,0.49]	chr7	652707	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.50805	4.524895	4.54174	0.00130137	0.00122223	0.0136936	0.0135383
chrX	37870008	37870108	18658247	0	+	0.47	(0.455,0.49]	chrX	1591451	567	INTRON	INTRON	RP5-972B16.2	ENSG00000250349.3	ENST00000465127.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.50805	4.524895	4.54174	0.00130137	0.00122223	0.0136936	0.0135383
chr11	61322353	61322412	12404132	0	-	0.440678	(0.42,0.455]	chr11	960238	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000541513.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	4.03383	4.524725	5.01562	1.01971e-4	4.24324e-5	0.0019861	8.98949e-4
chr4	13337537	13337624	4721283	0	+	0.45977	(0.455,0.49]	chr4	391941	2	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	39	2	3.24913	4.524570000000001	5.80001	0.00239443	1.35407e-6	0.0225356	5.16241e-5
chr1	32668838	32668854	130289	0	+	0.4375	(0.42,0.455]	chr1	16084	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000531983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.40276	4.5245	4.64624	0.0017618	8.75333e-4	0.0180053	0.0101169
chr15	41279688	41279788	14885228	0	+	0.54	(0.53,0.59]	chr15	1169243	4	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000560411.5:ENST00000392151.6:ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	3.30943	4.5245	5.73957	0.0018255	3.90343e-6	0.0183913	1.26306e-4
chr11	66003672	66003772	11987299	0	+	0.6	(0.59,1]	chr11	921244	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	BANF1	ENSG00000175334.8	ENST00000445560.6:ENST00000524663.1:ENST00000524628.1:ENST00000312175.7:ENST00000533166.5:ENST00000527348.1:ENST00000528648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	162	2	4.2595	4.524125	4.78875	1.50512e-6	1.30092e-6	6.21426e-5	5.00075e-5
chr3	13327216	13327289	4046302	0	-	0.643836	(0.59,1]	chr3	339552	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.67401	4.52392	6.37383	0.00166951	1.54311e-6	0.0173932	5.75816e-5
chr17	58351401	58351475	16612662	0	-	0.405405	(0.39,0.42]	chr17	1364753	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SUPT4H1:RP5-1171I10.8	ENSG00000213246.7:ENSG00000285897.1	ENST00000581166.5:ENST00000225504.8:ENST00000648873.1:ENST00000577396.5:ENST00000581540.5:ENST00000580947.1:ENST00000579289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.93975	4.523680000000001	5.10761	0.0105893	5.12039e-5	0.0644466	0.00114668
chr22	37678573	37678654	18363200	0	+	0.654321	(0.59,1]	chr22	1561875	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LGALS1	ENSG00000100097.12	ENST00000215909.10:ENST00000425542.5:ENST00000454173.1:ENST00000489315.5:ENST00000472321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.28861	4.523125	5.75764	0.0028753	4.53637e-5	0.0256141	9.4617e-4
chr12	56110963	56111058	12898071	0	+	0.473684	(0.455,0.49]	chr12	1004159	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11:ENST00000552266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	2.96139	4.5230950000000005	6.0848	2.95549e-4	1.71103e-7	0.00467597	8.87341e-6
chr7	92607896	92607995	8924918	0	-	0.323232	(0.29,0.33]	chr7	681136	31	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	4.42415	4.523085	4.62202	5.54501e-8	6.06788e-10	3.37102e-6	7.41179e-8
chr15	28315731	28315813	14838072	0	+	0.5	(0.49,0.53]	chr15	1164300	2	EXON_PSEUDO	EXON_PSEUDO	RPL41P2	ENSG00000256338.2	ENST00000544920.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	46	2	2.8671	4.52308	6.17906	0.0100489	1.01082e-7	0.0623334	5.6272e-6
chr8	144274828	144274928	10148133	0	-	0.5	(0.49,0.53]	chr8	763425	89	INTRON	INTRON	BOP1	ENSG00000261236.8	ENST00000569669.6:ENST00000569403.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.8671	4.52308	6.17906	0.0100489	1.01082e-7	0.0623334	5.6272e-6
chr21	8405559	8405659	18041586	0	+	0.43	(0.42,0.455]	chr21	1530864	2	SS3_PROX	SS3_PROX:INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	4.2855	4.52139	4.75728	5.3817e-4	8.02587e-6	0.00686676	2.50919e-4
chr2	85581616	85581716	1925041	0	+	0.41	(0.39,0.42]	chr2	181146	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VAMP8	ENSG00000118640.11	ENST00000432071.1:ENST00000263864.10:ENST00000409760.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.36441	4.52103	4.67765	7.04737e-4	4.74002e-6	0.00848325	1.63674e-4
chr1	54041723	54041805	1027277	0	-	0.426829	(0.42,0.455]	chr1	106621	1	CDS	CDS:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding	4	128	2	4.09661	4.52102	4.94543	2.79795e-5	2.34548e-11	7.07527e-4	3.728e-9
chr6	7331285	7331382	7587324	0	-	0.443299	(0.42,0.455]	chr6	578765	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SSR1:CAGE1:RP11-69L16.3	ENSG00000124783.14:ENSG00000164304.16:ENSG00000219375.1	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8:ENST00000404326.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	38	2	3.31161	4.520985	5.73036	0.00186138	2.37045e-6	0.018635	8.28831e-5
chr6	39191563	39191659	7690376	0	-	0.583333	(0.53,0.59]	chr6	589669	7	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.58031	4.520975	5.46164	3.64147e-5	2.11519e-5	8.79008e-4	5.06522e-4
chr15	78661576	78661675	15397344	0	-	0.565657	(0.53,0.59]	chr15	1217414	1	INTRON	INTRON	CHRNB4	ENSG00000117971.12	ENST00000560511.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	25	2	4.00393	4.520490000000001	5.03705	0.0108084	0.00020199200000000001	0.064368	0.00317801
chr16	262488	262553	15481068	0	+	0.584615	(0.53,0.59]	chr16	1224287	2	CDS	CDS:EXON_MRNA	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000301678.7:ENST00000600536.1:ENST00000424016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.00393	4.520490000000001	5.03705	0.0108084	0.00020199200000000001	0.064368	0.00317801
chr16	18500990	18501083	15876277	0	-	0.548387	(0.53,0.59]	chr16	1269080	1	CDS	CDS:EXON_MRNA:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	4.00393	4.520490000000001	5.03705	0.0108084	0.00020199200000000001	0.064368	0.00317801
chr8	33969800	33969879	9785945	0	-	0.405063	(0.39,0.42]	chr8	740127	4	EXON_PSEUDO	EXON_PSEUDO	RP1-273G13.2	ENSG00000188512.6	ENST00000523393.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.14886	4.52041	4.89196	0.00415881	2.62166e-4	0.0325842	0.0039188
chrX	78031490	78031582	18746179	0	+	0.413043	(0.39,0.42]	chrX	1599747	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.14886	4.52041	4.89196	0.00415881	2.62166e-4	0.0325842	0.0039188
chr1	65601391	65601488	253316	0	+	0.340206	(0.33,0.36]	chr1	28833	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.7655	4.520405	6.27531	0.0175892	1.97595e-8	0.0918323	1.39155e-6
chr15	88901642	88901735	15434304	0	-	0.569892	(0.53,0.59]	chr15	1220392	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5:ENST00000558029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	129	2	4.35914	4.5204	4.68166	1.35059e-7	9.1394e-9	8.11106e-6	7.18147e-7
chr1	235738201	235738299	766968	0	+	0.469388	(0.455,0.49]	chr1	77403	3	EXON_PSEUDO	EXON_PSEUDO	LDHAP2	ENSG00000235674.2	ENST00000437325.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	3.81275	4.520345	5.22794	0.0138827	4.80556e-5	0.0760883	9.91058e-4
chr5	5253571	5253671	5857948	0	+	0.46	(0.455,0.49]	chr5	460738	110	INTRON	INTRON	ADAMTS16	ENSG00000145536.15	ENST00000274181.7:ENST00000433402.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.81275	4.520345	5.22794	0.0138827	4.80556e-5	0.0760883	9.91058e-4
chr1	145314249	145314334	1266373	0	-	0.494118	(0.49,0.53]	chr1	124281	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF20	ENSG00000162825.16	ENST00000392971.6:ENST00000369373.9:ENST00000622803.4:ENST00000594479.7:ENST00000620821.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.44951	4.520325	5.59114	0.0405223	5.02516e-6	0.153343	1.7067e-4
chr2	134450738	134450838	2078503	0	+	0.51	(0.49,0.53]	chr2	194932	20	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.44951	4.520325	5.59114	0.0405223	5.02516e-6	0.153343	1.7067e-4
chr11	61323010	61323094	12404140	0	-	0.5	(0.49,0.53]	chr11	960241	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000539739.5:ENST00000540784.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000541513.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	3.02891	4.520265	6.01162	8.23332e-4	3.55916e-7	0.0102121	1.64926e-5
chr7	110721460	110721560	8999094	0	-	0.28	[0,0.29]	chr7	688379	561	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.47088	4.520205000000001	5.56953	0.0015572	3.09235e-6	0.0165415	1.03588e-4
chr8	125009027	125009084	9595456	0	+	0.368421	(0.36,0.39]	chr8	727917	2	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.83695	4.52013	5.20331	2.53222e-5	6.15027e-6	6.51851e-4	1.8415e-4
chr1	44897354	44897444	972572	0	-	0.433333	(0.42,0.455]	chr1	102677	1	CDS	CDS:EXON_MRNA	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.4231	4.52012	5.61714	0.00112541	4.98624e-6	0.0128481	1.54467e-4
chr17	48874859	48874949	16579448	0	-	0.433333	(0.42,0.455]	chr17	1362116	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SUMO2P17	ENSG00000248278.1	ENST00000508743.1:ENST00000504438.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	37	2	3.4231	4.52012	5.61714	0.00112541	4.98624e-6	0.0128481	1.54467e-4
chr13	20020615	20020714	13630993	0	+	0.262626	[0,0.29]	chr13	1074432	6	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.99114	4.51998	6.04882	2.71917e-4	3.98452e-8	0.00404713	2.80884e-6
chr9	122144240	122144340	10840113	0	-	0.54	(0.53,0.59]	chr9	821152	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.72408	4.519795	6.31551	3.72688e-4	6.83735e-8	0.00559101	4.03413e-6
chr13	29509413	29509512	13945167	0	-	0.333333	(0.33,0.36]	chr13	1094548	1	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.20756	4.519769999999999	4.83198	0.00386591	1.88689e-4	0.0310764	0.0032588
chr2	43911237	43911336	2623163	0	-	0.343434	(0.33,0.36]	chr2	236132	51	INTRON	INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683528.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.20756	4.519769999999999	4.83198	0.00386591	1.88689e-4	0.0310764	0.0032588
chr4	38700824	38700923	4796695	0	+	0.343434	(0.33,0.36]	chr4	395582	37	UTR3	UTR3:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.20756	4.519769999999999	4.83198	0.00386591	1.88689e-4	0.0310764	0.0032588
chr4	140543519	140543586	5131588	0	+	0.343284	(0.33,0.36]	chr4	415460	2	CDS	CDS:EXON_MRNA	ELMOD2	ENSG00000179387.10	ENST00000323570.8:ENST00000502290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.20756	4.519769999999999	4.83198	0.00386591	1.88689e-4	0.0310764	0.0032588
chr20	44501224	44501300	17982009	0	-	0.513158	(0.49,0.53]	chr20	1523372	3	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.11892	4.5194600000000005	5.92	0.00398244	6.89283e-7	0.0322851	2.91313e-5
chr20	21114912	21115007	17732958	0	+	0.452632	(0.42,0.455]	chr20	1496339	3	EXON_PSEUDO	EXON_PSEUDO	RPL24P2	ENSG00000235065.1	ENST00000421023.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	41	2	3.05889	4.519305	5.97972	0.00524205	4.13864e-7	0.0399155	1.88179e-5
chr16	153959	154027	15480572	0	+	0.691176	(0.59,1]	chr16	1224147	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000652335.1:ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	1022	2	4.03411	4.519185	5.00426	3.73222e-9	1e-12	3.58914e-7	2.25522e-10
chrX	48461035	48461086	19062759	0	-	0.666667	(0.59,1]	chrX	1620391	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.99997	4.519155	5.03834	0.00108238	1.30803e-4	0.0118355	0.00243846
chr20	50081509	50081606	18004122	0	-	0.474227	(0.455,0.49]	chr20	1525944	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	3.46389	4.518535	5.57318	9.14164e-4	6.11867e-6	0.0110519	1.83393e-4
chrX	40605583	40605655	18667636	0	+	0.361111	(0.36,0.39]	chrX	1591886	1	CDS	CDS:UTR3:EXON_MRNA	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637165.1:ENST00000636223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	4.20437	4.518425000000001	4.83248	1.26726e-7	2.74083e-8	7.71033e-6	1.84921e-6
chr10	22329930	22330027	10962216	0	+	0.340206	(0.33,0.36]	chr10	834314	5	UTR3	UTR3:EXON_MRNA	BMI1	ENSG00000168283.14	ENST00000376663.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.51378	4.5182199999999995	4.52266	0.00118147	8.34989e-4	0.0127276	0.0102956
chr4	158709561	158709648	5753385	0	-	0.356322	(0.33,0.36]	chr4	454478	6	UTR3	UTR3:EXON_MRNA	PPID	ENSG00000171497.5	ENST00000307720.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.51378	4.5182199999999995	4.52266	0.00118147	8.34989e-4	0.0127276	0.0102956
chr7	129477874	129477949	8525980	0	+	0.346667	(0.33,0.36]	chr7	650911	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	STRIP2:SNRPGP3	ENSG00000128578.10:ENSG00000239919.1	ENST00000249344.7:ENST00000435494.2:ENST00000469405.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	18	2	4.51378	4.5182199999999995	4.52266	0.00118147	8.34989e-4	0.0127276	0.0102956
chr8	99891907	99891921	9970735	0	-	0.357143	(0.33,0.36]	chr8	752099	1	CDS	CDS:EXON_MRNA	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5:ENST00000518171.5:ENST00000523016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.51378	4.5182199999999995	4.52266	0.00118147	8.34989e-4	0.0127276	0.0102956
chr6	35468400	35468434	7130838	0	+	0.588235	(0.53,0.59]	chr6	549006	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPL10A	ENSG00000198755.11	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000490335.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	503	2	4.15903	4.51812	4.87721	2.55574e-10	1e-12	3.4619e-8	2.25522e-10
chr19	44908973	44909061	17349678	0	+	0.761364	(0.59,1]	chr19	1439242	6	CDS	CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000252486.9:ENST00000434152.5	protein_coding	protein_coding	protein_coding	protein_coding	6	290	2	4.11929	4.517775	4.91626	1.33153e-7	1.24784e-8	8.01671e-6	9.37445e-7
chrX	41349796	41349894	18669517	0	+	0.316327	(0.29,0.33]	chrX	1592243	20	UTR3	UTR3:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000642589.1:ENST00000645380.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.90323	4.5176050000000005	5.13198	9.15815e-5	1.0981e-8	0.00168607	9.2299e-7
chr16	29664648	29664739	15626156	0	+	0.714286	(0.59,1]	chr16	1239195	10	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	384	2	4.15857	4.51724	4.87591	3.56539e-8	1.57812e-9	2.55916e-6	1.58076e-7
chr6	36968806	36968902	7683198	0	-	0.541667	(0.53,0.59]	chr6	589200	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10:ENST00000471737.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	2.58886	4.51702	6.44518	7.82255e-4	2.49042e-8	0.00975183	1.70299e-6
chr1	156137172	156137232	486150	0	+	0.616667	(0.59,1]	chr1	51295	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	306	2	3.54211	4.516970000000001	5.49183	6.09008e-6	1.5066e-10	2.00008e-4	1.9482e-8
chr9	12973140	12973239	10572350	0	-	0.50505	(0.49,0.53]	chr9	800168	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187K14.1:PRDX1P1	ENSG00000285637.2:ENSG00000214121.4	ENST00000649120.1:ENST00000449329.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	39	2	3.42954	4.51678	5.60402	0.00105489	5.78803e-6	0.0123035	1.75119e-4
chr7	100627415	100627491	8952229	0	-	0.565789	(0.53,0.59]	chr7	684162	3	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000461176.1:ENST00000473374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	131	2	4.20024	4.51642	4.8326	4.7401e-7	2.39054e-9	2.35621e-5	2.245e-7
chr10	22535439	22535537	11411104	0	-	0.520408	(0.49,0.53]	chr10	869854	7	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	4.40667	4.516205	4.62574	3.62526e-6	7.86745e-7	1.29307e-4	3.25904e-5
chr5	76733204	76733303	6044922	0	+	0.515152	(0.49,0.53]	chr5	474229	10	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	4.40667	4.516205	4.62574	3.62526e-6	7.86745e-7	1.29307e-4	3.25904e-5
chr9	129085206	129085305	10483293	0	+	0.515152	(0.49,0.53]	chr9	791302	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12:ENST00000412363.1:ENST00000480255.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.9516	4.516105	5.08061	1.00361e-4	6.96459e-5	0.00196575	0.0013446
chr16	21599557	21599645	15585032	0	+	0.75	(0.59,1]	chr16	1235166	1	UTR5	UTR5:EXON_MRNA:INTRON	METTL9	ENSG00000197006.14	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000562379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	2.63214	4.516065	6.39999	0.005622	1.31939e-6	0.0421873	5.06228e-5
chr17	42201441	42201540	16546633	0	-	0.50505	(0.49,0.53]	chr17	1357142	24	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	7	180	2	4.13788	4.5156600000000005	4.89344	7.65988e-9	4.28104e-11	6.77025e-7	6.40471e-9
chr12	51056143	51056218	12876123	0	+	0.493333	(0.49,0.53]	chr12	1000579	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000552433.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	3.43991	4.515525	5.59114	8.40266e-5	5.02516e-6	0.00158427	1.7067e-4
chrX	53143027	53143126	19075162	0	-	0.525253	(0.49,0.53]	chrX	1622215	3	EXON_PSEUDO	EXON_PSEUDO	ACTG1P10	ENSG00000231340.1	ENST00000428275.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	235	2	4.2304	4.5154250000000005	4.80045	3.16445e-9	2.02638e-12	3.11777e-7	4.24095e-10
chr7	103496525	103496606	8963208	0	-	0.469136	(0.455,0.49]	chr7	686095	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.12843	4.514875	5.90132	0.00392855	6.63378e-7	0.0322851	2.82038e-5
chr7	107917272	107917367	8457457	0	+	0.473684	(0.455,0.49]	chr7	646322	1	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.53523	4.514875	6.49452	0.00270505	6.22217e-9	0.0243939	5.13192e-7
chr5	72910707	72910806	6029410	0	+	0.343434	(0.33,0.36]	chr5	472817	21	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	3.96241	4.514515	5.06662	2.45889e-6	1.70355e-8	8.56405e-5	1.3397e-6
chr18	672897	672997	16717049	0	+	0.36	(0.33,0.36]	chr18	1379308	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	81	2	4.2129	4.51449	4.81608	1.61632e-7	2.43796e-8	9.55034e-6	1.67367e-6
chr20	32141569	32141665	17752379	0	+	0.583333	(0.53,0.59]	chr20	1498468	1	CDS	CDS:UTR3:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.39416	4.51445	5.63474	0.00126006	7.53339e-6	0.013837	2.17987e-4
chr11	119096802	119096899	12626613	0	-	0.463918	(0.455,0.49]	chr11	979850	9	UTR3	UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	4.31177	4.51427	4.71677	3.31178e-7	1.61752e-7	1.74638e-5	8.47204e-6
chr1	245798341	245798441	1592249	0	-	0.51	(0.49,0.53]	chr1	158495	95	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.23759	4.514225	4.79086	0.00436474	4.20783e-4	0.0335517	0.00611538
chr10	3136675	3136771	10903889	0	+	0.520833	(0.49,0.53]	chr10	829804	2	UTR3	UTR3:EXON_MRNA:INTRON	PFKP:RP11-298E9.7	ENSG00000067057.18:ENSG00000278419.1	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000381072.5:ENST00000433193.2:ENST00000441377.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	22	2	4.23759	4.514225	4.79086	0.00436474	4.20783e-4	0.0335517	0.00611538
chr11	18665448	18665548	11832471	0	+	0.51	(0.49,0.53]	chr11	906178	5	EXON_PSEUDO	EXON_PSEUDO	SRSF3P1	ENSG00000257043.1	ENST00000537438.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.23759	4.514225	4.79086	0.00436474	4.20783e-4	0.0335517	0.00611538
chr12	2720077	2720177	13172890	0	-	0.5	(0.49,0.53]	chr12	1030572	134	INTRON	INTRON	ITFG2-AS1	ENSG00000256150.2	ENST00000636122.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.23759	4.514225	4.79086	0.00436474	4.20783e-4	0.0335517	0.00611538
chrX	40071443	40071536	19045104	0	-	0.258065	[0,0.29]	chrX	1618747	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.45419	4.514175	4.57416	0.00133426	6.75561e-4	0.0139317	0.00873562
chr1	28281199	28281298	115652	0	+	0.494949	(0.49,0.53]	chr1	14152	5	UTR3	UTR3:EXON_MRNA	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.28332	4.51385	4.74438	0.00338762	5.91752e-4	0.0288632	0.00743488
chr19	34196698	34196763	17298758	0	+	0.523077	(0.49,0.53]	chr19	1429664	2	CDS	CDS:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.28332	4.51385	4.74438	0.00338762	5.91752e-4	0.0288632	0.00743488
chr2	217805399	217805498	3184100	0	-	0.525253	(0.49,0.53]	chr2	279596	4	INTRON	INTRON	TNS1	ENSG00000079308.20	ENST00000646520.1:ENST00000171887.8:ENST00000682258.1:ENST00000651849.1:ENST00000446688.5:ENST00000611415.4:ENST00000615025.5:ENST00000490566.1:ENST00000419504.5:ENST00000430930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.28332	4.51385	4.74438	0.00338762	5.91752e-4	0.0288632	0.00743488
chr9	37440906	37441003	10644810	0	-	0.505155	(0.49,0.53]	chr9	805688	4	CDS	CDS:EXON_MRNA	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.28332	4.51385	4.74438	0.00338762	5.91752e-4	0.0288632	0.00743488
chr6	109379578	109379662	7886782	0	-	0.380952	(0.36,0.39]	chr6	603715	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	214	2	4.41613	4.513745	4.61136	3.60868e-9	1e-12	3.48477e-7	2.25522e-10
chr1	99728566	99728640	1197544	0	-	0.472973	(0.455,0.49]	chr1	116878	2	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.96464	4.513730000000001	5.06282	1.16789e-4	6.27408e-5	0.0020505	0.00135074
chr1	150750094	150750171	1290258	0	-	0.38961	(0.36,0.39]	chr1	128443	1	CDS	CDS:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.16143	4.513730000000001	4.86603	0.00486719	1.68962e-4	0.0366328	0.00297945
chr14	35745328	35745426	14583111	0	-	0.387755	(0.36,0.39]	chr14	1142695	24	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.16143	4.513730000000001	4.86603	0.00486719	1.68962e-4	0.0366328	0.00297945
chr2	157299547	157299606	2152524	0	+	0.38983	(0.36,0.39]	chr2	198601	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.16143	4.513730000000001	4.86603	0.00486719	1.68962e-4	0.0366328	0.00297945
chr20	3934162	3934201	17883266	0	-	0.487179	(0.455,0.49]	chr20	1513719	1	CDS	CDS:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.96464	4.513730000000001	5.06282	1.16789e-4	6.27408e-5	0.0020505	0.00135074
chr22	23240218	23240318	18307230	0	+	0.38	(0.36,0.39]	chr22	1555081	405	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.16143	4.513730000000001	4.86603	0.00486719	1.68962e-4	0.0366328	0.00297945
chr3	31619675	31619752	3392323	0	+	0.38961	(0.36,0.39]	chr3	295056	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	59	2	4.07544	4.513310000000001	4.95118	3.61377e-5	5.05967e-8	8.73633e-4	3.11657e-6
chr14	58427147	58427242	14652354	0	-	0.515789	(0.49,0.53]	chr14	1147576	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000557397.5:ENST00000556367.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	4.09049	4.51327	4.93605	2.9452e-5	6.89689e-8	7.32348e-4	4.06041e-6
chrX	74583273	74583373	19117435	0	-	0.47	(0.455,0.49]	chrX	1626323	4	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	RLIM:PABPC1P3	ENSG00000131263.13:ENSG00000230673.3	ENST00000332687.11:ENST00000469174.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	116	2	2.92901	4.513235	6.09746	0.00141135	1e-12	0.0151901	2.25522e-10
chr17	37147263	37147363	16523946	0	-	0.46	(0.455,0.49]	chr17	1352103	29	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.26593	4.513205	4.76048	0.00372962	3.99985e-4	0.0302984	0.00588767
chr3	41225037	41225122	3432465	0	+	0.470588	(0.455,0.49]	chr3	298534	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.26593	4.513205	4.76048	0.00372962	3.99985e-4	0.0302984	0.00588767
chr6	44255005	44255105	7710361	0	-	0.57	(0.53,0.59]	chr6	591840	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC35B2	ENSG00000157593.19	ENST00000495706.1:ENST00000393810.5:ENST00000393812.4:ENST00000615337.4:ENST00000538577.5:ENST00000537814.2:ENST00000619636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.15805	4.51314	4.86823	0.00680952	4.35895e-4	0.0468196	0.00623608
chr1	150509711	150509762	468319	0	+	0.568627	(0.53,0.59]	chr1	47394	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000498579.5:ENST00000496744.5:ENST00000346569.6:ENST00000369047.9:ENST00000490346.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr1	150513367	150513467	468363	0	+	0.55	(0.53,0.59]	chr1	47415	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr10	101781735	101781835	11665741	0	-	0.57	(0.53,0.59]	chr10	889315	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NPM3	ENSG00000107833.10	ENST00000370110.5:ENST00000474993.5:ENST00000462391.5:ENST00000468544.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr17	28347819	28347918	16484306	0	-	0.555556	(0.53,0.59]	chr17	1347487	13	UTR3	UTR3:EXON_MRNA	POLDIP2	ENSG00000004142.12	ENST00000540200.6:ENST00000618887.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr19	18866063	18866163	17260782	0	+	0.57	(0.53,0.59]	chr19	1425855	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000596842.5:ENST00000600689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr2	131501357	131501432	2068138	0	+	0.56	(0.53,0.59]	chr2	194367	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SMPD4BP	ENSG00000152117.17	ENST00000438378.2:ENST00000415574.6	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr20	396883	396979	17644588	0	+	0.53125	(0.53,0.59]	chr20	1491383	3	UTR3	UTR3:EXON_MRNA	TRIB3	ENSG00000101255.12	ENST00000217233.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.16383	4.513075000000001	4.86232	0.00659193	4.57805e-4	0.0454205	0.00608573
chr7	107959325	107959402	8987588	0	-	0.597403	(0.59,1]	chr7	687649	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	3.98751	4.512925	5.03834	0.0301044	0.00108238	0.129773	0.0118355
chr7	128854502	128854592	8522521	0	+	0.655556	(0.59,1]	chr7	650455	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.98751	4.512925	5.03834	0.0301044	0.00108238	0.129773	0.0118355
chr8	144360651	144360713	9652296	0	+	0.774194	(0.59,1]	chr8	731968	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	3.98751	4.512925	5.03834	0.0301044	0.00108238	0.129773	0.0118355
chr9	33135266	33135345	10631810	0	-	0.632911	(0.59,1]	chr9	803460	2	CDS	CDS:EXON_MRNA	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	3.98751	4.512925	5.03834	0.0301044	0.00108238	0.129773	0.0118355
chr12	51241018	51241116	12876210	0	+	0.571429	(0.53,0.59]	chr12	1000607	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000552173.5:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	128	2	4.384	4.51266	4.64132	1.10412e-7	1.29785e-8	6.85761e-6	9.70419e-7
chr13	49661070	49661139	14019771	0	-	0.463768	(0.455,0.49]	chr13	1099595	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.36307	4.512585	4.6621	0.00218641	7.84472e-4	0.0208941	0.00927662
chr2	53920888	53920960	2664685	0	-	0.458333	(0.455,0.49]	chr2	238268	1	CDS	CDS:UTR3:EXON_MRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.36307	4.512585	4.6621	0.00218641	7.84472e-4	0.0208941	0.00927662
chr4	141231438	141231485	5131887	0	+	0.489362	(0.455,0.49]	chr4	415530	1	CDS	CDS:UTR3:EXON_MRNA	ZNF330	ENSG00000109445.11	ENST00000262990.9:ENST00000507532.5:ENST00000512809.5:ENST00000506302.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.36307	4.512585	4.6621	0.00218641	7.84472e-4	0.0208941	0.00927662
chr6	30563156	30563250	7111349	0	+	0.478723	(0.455,0.49]	chr6	544798	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRR3	ENSG00000204576.12	ENST00000376557.3:ENST00000376560.8:ENST00000481741.5:ENST00000498336.5:ENST00000470703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	4.36307	4.512585	4.6621	0.00218641	7.84472e-4	0.0208941	0.00927662
chr6	143284109	143284167	7447134	0	+	0.465517	(0.455,0.49]	chr6	569880	1	CDS	CDS:EXON_MRNA	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.36307	4.512585	4.6621	0.00218641	7.84472e-4	0.0208941	0.00927662
chrX	92113712	92113806	19142678	0	-	0.478723	(0.455,0.49]	chrX	1627984	6	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.36307	4.512585	4.6621	0.00218641	7.84472e-4	0.0208941	0.00927662
chr7	128085710	128085780	8519307	0	+	0.485714	(0.455,0.49]	chr7	649803	1	CDS	CDS:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	8	165	2	4.11252	4.51238	4.91224	6.63701e-8	2.38896e-10	4.34166e-6	2.95555e-8
chr11	44108160	44108248	11926204	0	+	0.534091	(0.53,0.59]	chr11	911522	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000529186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	3.69065	4.51208	5.33351	3.04331e-4	4.35359e-5	0.00472028	0.00091744700000000005
chr3	184244600	184244660	4622945	0	-	0.616667	(0.59,1]	chr3	381730	1	CDS	CDS:UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000462735.6:ENST00000423996.5:ENST00000477959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.61023	4.51174	5.41325	7.25496e-4	3.01546e-4	0.00869086	0.00472028
chr6	26124428	26124525	7101133	0	+	0.618557	(0.59,1]	chr6	542793	2	CDS	CDS:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000377791.4:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	401	2	3.6343	4.51169	5.38908	2.23396e-7	3.39489e-10	1.25333e-5	4.02316e-8
chr17	8521091	8521188	16433456	0	-	0.443299	(0.42,0.455]	chr17	1340728	1	CDS	CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000469865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.91097	4.511575000000001	5.11218	8.75299e-5	6.01815e-5	0.0016272	0.00130886
chrX	155279148	155279239	19283309	0	-	0.450549	(0.42,0.455]	chrX	1639094	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5:ENST00000321926.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	4.16236	4.511369999999999	4.86038	3.34791e-4	1.83138e-5	0.00472923	4.99708e-4
chr20	50584658	50584755	17816229	0	+	0.350515	(0.33,0.36]	chr20	1507152	21	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.4998	4.511229999999999	4.52266	8.34989e-4	1.74876e-6	0.0102956	6.39864e-5
chr2	121339068	121339168	2860459	0	-	0.52	(0.49,0.53]	chr2	255378	14	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	6	156	2	4.50328	4.510775000000001	4.51827	2.0285e-9	1.53665e-9	1.95823e-7	1.66562e-7
chr1	158525542	158525641	492369	0	+	0.454545	(0.42,0.455]	chr1	52527	20	EXON_PSEUDO	EXON_PSEUDO	HSP90AA3P	ENSG00000231434.1	ENST00000436135.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.52659	4.510435	5.49428	6.87022e-4	1.07978e-5	0.00876781	2.9314e-4
chr22	35838216	35838315	18495451	0	-	0.20202	[0,0.29]	chr22	1577878	14	INTRON	INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000359369.8:ENST00000416721.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	82	2	4.34926	4.510165000000001	4.67107	1.53704e-8	5.6138e-9	1.2249e-6	4.7251e-7
chr6	33276466	33276511	7121558	0	+	0.355556	(0.33,0.36]	chr6	547512	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1:ENST00000479802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	3.46908	4.509895	5.55071	0.00114872	4.61342e-6	0.0130528	0.00014480800000000001
chr12	124814337	124814405	13600521	0	-	0.544118	(0.53,0.59]	chr12	1071729	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.69065	4.509785	5.32892	3.04331e-4	3.32391e-9	0.00472028	2.99265e-7
chr7	6054608	6054671	8662731	0	-	0.460317	(0.455,0.49]	chr7	662615	2	CDS	CDS:UTR3:EXON_MRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	4.03349	4.509475	4.98546	4.13044e-5	4.25596e-8	9.71332e-4	2.67971e-6
chr4	87357347	87357416	5518205	0	-	0.376812	(0.36,0.39]	chr4	441942	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	3.54224	4.509365	5.47649	4.51643e-5	4.3709e-6	9.43703e-4	1.52262e-4
chrX	3933474	3933573	18933128	0	-	0.30303	(0.29,0.33]	chrX	1613540	13	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000381105.2	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	4.45534	4.5093499999999995	4.56336	0.00110984	8.8231e-4	0.0127344	0.0101404
chr16	74485795	74485856	16031350	0	-	0.409836	(0.39,0.42]	chr16	1287345	1	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.93996	4.50924	5.07852	0.00841622	1.02164e-4	0.054565	0.00183311
chr17	63756239	63756268	16634768	0	-	0.413793	(0.39,0.42]	chr17	1367588	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1:ENST00000582331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.93996	4.50924	5.07852	0.00841622	1.02164e-4	0.054565	0.00183311
chr9	5919493	5919588	10543432	0	-	0.4	(0.39,0.42]	chr9	799473	6	UTR3	UTR3:EXON_MRNA:INTRON	KIAA2026	ENSG00000183354.12	ENST00000436015.6:ENST00000399933.8:ENST00000381461.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.93996	4.50924	5.07852	0.00841622	1.02164e-4	0.054565	0.00183311
chr1	39004341	39004436	145755	0	+	0.357895	(0.33,0.36]	chr1	18077	4	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	4.04617	4.508865	4.97156	1.29334e-6	4.09248e-8	4.97655e-5	2.87331e-6
chr1	11054588	11054680	859073	0	-	0.5	(0.49,0.53]	chr1	86758	1	UTR3	UTR3:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000475189.1:ENST00000376957.7:ENST00000490101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	135	2	3.97501	4.508565	5.04212	2.122e-7	2.31429e-10	1.19792e-5	2.86622e-8
chr15	74845470	74845531	15375886	0	-	0.622951	(0.59,1]	chr15	1215477	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.65509	4.50856	5.36203	5.95213e-4	3.74697e-4	0.00746384	0.00560631
chr1	2308833	2308932	7394	0	+	0.646465	(0.59,1]	chr1	1667	22	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.44671	4.50854	4.57037	0.00931497	0.0054994	0.0586162	0.0402071
chr3	184332015	184332086	3949334	0	+	0.591549	(0.59,1]	chr3	332492	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000422614.5:ENST00000460829.5:ENST00000475721.5:ENST00000478291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.44671	4.50854	4.57037	0.00931497	0.0054994	0.0586162	0.0402071
chr8	144360258	144360336	9652291	0	+	0.653846	(0.59,1]	chr8	731966	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.44671	4.50854	4.57037	0.00931497	0.0054994	0.0586162	0.0402071
chr9	134650470	134650566	10885154	0	-	0.645833	(0.59,1]	chr9	826480	5	INTRON	INTRON	COL5A1-AS1	ENSG00000204011.5	ENST00000371813.5	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.44671	4.50854	4.57037	0.00931497	0.0054994	0.0586162	0.0402071
chr1	7984954	7985054	30740	0	+	0.53	(0.49,0.53]	chr1	3617	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000377488.5:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	3.25244	4.5085	5.76456	1.25784e-5	1.57714e-6	3.31924e-4	6.4504e-5
chr16	21403181	21403281	15888062	0	-	0.63	(0.59,1]	chr16	1271075	2	SS3_PROX	SS3_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.47517	4.5085	4.54183	0.00735659	0.0070583	0.0491503	0.0478044
chr16	30223720	30223819	15913237	0	-	0.59596	(0.59,1]	chr16	1275086	7	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.47517	4.5085	4.54183	0.00735659	0.0070583	0.0491503	0.0478044
chr19	19121041	19121092	17502067	0	-	0.764706	(0.59,1]	chr19	1468654	2	CDS	CDS:UTR3:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.47517	4.5085	4.54183	0.00735659	0.0070583	0.0491503	0.0478044
chr19	40617099	40617162	17330405	0	+	0.666667	(0.59,1]	chr19	1436030	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000612121.4:ENST00000600499.5:ENST00000610893.4:ENST00000612845.4:ENST00000599724.5:ENST00000597071.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000618486.4:ENST00000318809.11:ENST00000597816.5:ENST00000596351.5:ENST00000622107.4:ENST00000617753.4:ENST00000594448.5:ENST00000595665.1:ENST00000622457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.47517	4.5085	4.54183	0.00735659	0.0070583	0.0491503	0.0478044
chr6	7231083	7231175	7031182	0	+	0.695652	(0.59,1]	chr6	538733	2	CDS	CDS:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000611109.1	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.47517	4.5085	4.54183	0.00735659	0.0070583	0.0491503	0.0478044
chrX	154364021	154364093	19278139	0	-	0.652778	(0.59,1]	chrX	1638338	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.47517	4.5085	4.54183	0.00735659	0.0070583	0.0491503	0.0478044
chr11	57332434	57332486	12394109	0	-	0.538462	(0.53,0.59]	chr11	958542	2	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.82407	4.508475	5.19288	0.0179666	9.22873e-5	0.0918323	0.0016906
chr11	95128559	95128651	12083286	0	+	0.543478	(0.53,0.59]	chr11	931353	3	CDS	CDS:EXON_MRNA	ENDOD1	ENSG00000149218.5	ENST00000278505.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.82407	4.508475	5.19288	0.0179666	9.22873e-5	0.0918323	0.0016906
chr7	73693338	73693414	8332372	0	+	0.539474	(0.53,0.59]	chr7	634578	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.82407	4.508475	5.19288	0.0179666	9.22873e-5	0.0918323	0.0016906
chr7	100091094	100091152	8425356	0	+	0.534483	(0.53,0.59]	chr7	642466	2	CDS	CDS:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000468499.5:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.82407	4.508475	5.19288	0.0179666	9.22873e-5	0.0918323	0.0016906
chr2	221963571	221963668	2403294	0	+	0.443299	(0.42,0.455]	chr2	216413	20	EXON_PSEUDO	EXON_PSEUDO	HSPA9P1	ENSG00000226666.1	ENST00000432228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.05954	4.50807	4.9566	0.00617886	2.10615e-4	0.0439741	0.00327655
chr4	173302105	173302164	5233537	0	+	0.440678	(0.42,0.455]	chr4	421212	2	CDS	CDS:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000506317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.05954	4.50807	4.9566	0.00617886	2.10615e-4	0.0439741	0.00327655
chr7	112772963	112773055	9013372	0	-	0.445652	(0.42,0.455]	chr7	688829	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1:ENST00000480969.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.05954	4.50807	4.9566	0.00617886	2.10615e-4	0.0439741	0.00327655
chr1	42926515	42926612	966972	0	-	0.587629	(0.53,0.59]	chr1	101864	13	UTR3	UTR3:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	306	2	4.44619	4.508039999999999	4.56989	1.88355e-10	1.4437e-11	2.64322e-8	2.42038e-9
chr19	12800992	12801069	17470990	0	-	0.519481	(0.49,0.53]	chr19	1463182	2	CDS	CDS:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	3.47167	4.507785	5.5439	6.95049e-5	8.44877e-6	0.00147069	2.39255e-4
chr3	184116050	184116147	3947757	0	+	0.412371	(0.39,0.42]	chr3	331832	3	EXON_PSEUDO	EXON_PSEUDO	HSP90AA5P	ENSG00000205955.4	ENST00000438353.1	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	1	33	2	3.85207	4.50777	5.16347	1.28587e-4	6.48089e-5	0.00241206	0.00126536
chr11	66366152	66366191	12424307	0	-	0.615385	(0.59,1]	chr11	964631	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.11672	4.507645	4.89857	0.0222273	0.00182139	0.105595	0.0176016
chr6	52403697	52403793	7177647	0	+	0.520833	(0.49,0.53]	chr6	555098	5	CDS	CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	4.4279	4.507325	4.58675	0.00196987	1.05095e-6	0.0193972	4.17035e-5
chr11	62855800	62855885	12411601	0	-	0.352941	(0.33,0.36]	chr11	961829	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000660547.1:ENST00000661616.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000656589.1:ENST00000545920.2:ENST00000670502.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000542112.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	114	2	4.12795	4.507225	4.8865	9.44423e-7	2.8047e-11	4.21505e-5	4.38008e-9
chr6	69718955	69719018	7788194	0	-	0.31746	(0.29,0.33]	chr6	596354	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.48001	4.506265	5.53252	0.00126219	4.41551e-6	0.013837	1.39924e-4
chr6	43225680	43225732	7707048	0	-	0.346154	(0.33,0.36]	chr6	591228	2	UTR3	UTR3:EXON_MRNA	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	4.4998	4.506245	4.51269	1.90304e-6	1.74876e-6	7.59317e-5	6.39864e-5
chr3	33134181	33134265	3397732	0	+	0.392857	(0.39,0.42]	chr3	295501	1	CDS	CDS:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.19588	4.505895	5.81591	0.00321212	1.11558e-6	0.0280721	4.4003e-5
chr6	69713720	69713797	7788141	0	-	0.415584	(0.39,0.42]	chr6	596348	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.19588	4.505895	5.81591	0.00321212	1.11558e-6	0.0280721	4.4003e-5
chr9	103204179	103204278	10778049	0	-	0.393939	(0.39,0.42]	chr9	815846	157	INTRON	INTRON	LINC01492	ENSG00000225564.6	ENST00000411575.5	lncRNA	lncRNA	lncRNA	lncRNA	1	37	2	3.19588	4.505895	5.81591	0.00321212	1.11558e-6	0.0280721	4.4003e-5
chr1	55039937	55039990	203592	0	+	0.660377	(0.59,1]	chr1	26109	1	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	129	2	3.59848	4.505865	5.41325	3.01546e-4	3.47721e-6	0.00472028	1.13791e-4
chr18	46098292	46098353	17103957	0	-	0.639344	(0.59,1]	chr18	1404407	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	3.84557	4.505665	5.16576	0.0410704	6.55716e-4	0.163285	0.0080931
chr22	42619872	42619945	18524341	0	-	0.643836	(0.59,1]	chr22	1581942	1	CDS	CDS:EXON_MRNA	CYB5R3	ENSG00000100243.21	ENST00000352397.10:ENST00000361740.8:ENST00000407623.7:ENST00000407332.5:ENST00000470741.1:ENST00000402438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	3.84557	4.505665	5.16576	0.0410704	6.55716e-4	0.163285	0.0080931
chr3	49129244	49129324	4172813	0	-	0.7	(0.59,1]	chr3	350581	1	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000483321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	3.84557	4.505665	5.16576	0.0410704	6.55716e-4	0.163285	0.0080931
chr12	57512235	57512302	12902989	0	+	0.447761	(0.42,0.455]	chr12	1005399	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	MARS1:MIR6758	ENSG00000166986.15:ENSG00000284152.1	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000548944.1:ENST00000546971.5:ENST00000548630.1:ENST00000549048.1:ENST00000620653.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	35	2	3.87922	4.5054549999999995	5.13169	1.04705e-4	8.60227e-5	0.0020295	0.00160731
chr12	111451232	111451329	13092110	0	+	0.42268	(0.42,0.455]	chr12	1021116	31	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.87922	4.5054549999999995	5.13169	1.04705e-4	8.60227e-5	0.0020295	0.00160731
chr6	166929739	166929791	8083228	0	-	0.442308	(0.42,0.455]	chr6	616942	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	3.19078	4.5054099999999995	5.82004	0.00310864	1.9039e-11	0.0274272	3.09379e-9
chr1	109412130	109412184	1220480	0	-	0.481481	(0.455,0.49]	chr1	119089	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000477897.1:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	3.37741	4.505365	5.63332	1.27402e-4	4.15159e-6	0.00241206	1.32627e-4
chr1	43976589	43976659	169372	0	+	0.485714	(0.455,0.49]	chr1	21848	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000472505.6:ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000461670.5:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	108	2	3.60701	4.505155	5.4033	8.32004e-7	7.61238e-10	3.41255e-5	9.03421e-8
chr12	104348917	104349016	13059143	0	+	0.515152	(0.49,0.53]	chr12	1017716	6	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.73494	4.504855	5.27477	0.0189345	4.14521e-5	0.0934721	8.8376e-4
chr3	123110943	123111004	3706564	0	+	0.52459	(0.49,0.53]	chr3	316810	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000495004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	3.73494	4.504855	5.27477	0.0189345	4.14521e-5	0.0934721	8.8376e-4
chr6	125263058	125263154	7383895	0	+	0.395833	(0.39,0.42]	chr6	566005	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPD52L1	ENSG00000111907.21	ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000528193.5:ENST00000534199.5:ENST00000392482.6:ENST00000524679.1:ENST00000530868.1:ENST00000571678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	72	2	3.2648	4.504595	5.74439	3.84212e-6	7.99187e-7	1.24728e-4	3.66071e-5
chr11	57410027	57410121	12394457	0	-	0.659574	(0.59,1]	chr11	958641	2	CDS	CDS:EXON_MRNA:INTRON	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	217	2	3.6876	4.5044900000000005	5.3213800000000004	2.42288e-6	3.69175e-8	9.29259e-5	2.38163e-6
chr11	27889236	27889336	12317011	0	-	0.4	(0.39,0.42]	chr11	952778	5	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.3313	4.504474999999999	4.67765	0.00209984	7.04737e-4	0.0204266	0.00848325
chr12	283855	283955	13166588	0	-	0.4	(0.39,0.42]	chr12	1029833	39	UTR3	UTR3:EXON_MRNA	KDM5A	ENSG00000073614.13	ENST00000399788.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.3313	4.504474999999999	4.67765	0.00209984	7.04737e-4	0.0204266	0.00848325
chr2	190692571	190692668	2279510	0	+	0.402062	(0.39,0.42]	chr2	206861	24	UTR3	UTR3:EXON_MRNA	NAB1	ENSG00000138386.17	ENST00000337386.10	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.3313	4.504474999999999	4.67765	0.00209984	7.04737e-4	0.0204266	0.00848325
chr20	44903992	44904056	17799123	0	+	0.390625	(0.39,0.42]	chr20	1504682	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1:ENST00000633979.1:ENST00000477896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.3313	4.504474999999999	4.67765	0.00209984	7.04737e-4	0.0204266	0.00848325
chr5	149368085	149368179	6290589	0	+	0.574468	(0.53,0.59]	chr5	490742	2	CDS	CDS:UTR3:EXON_MRNA	PCYOX1L	ENSG00000145882.11	ENST00000274569.9:ENST00000511945.5:ENST00000505669.5:ENST00000503240.5:ENST00000514349.1:ENST00000507621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	3.21941	4.50434	5.78927	0.00266171	2.83401e-6	0.0240332	9.62519e-5
chr1	171577501	171577569	537475	0	+	0.426471	(0.42,0.455]	chr1	57702	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	4.39894	4.50395	4.60896	3.61951e-6	8.72604e-7	1.29307e-4	3.55816e-5
chr14	103915089	103915189	14797171	0	-	0.41	(0.39,0.42]	chr14	1159816	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2:ENST00000557260.1:ENST00000554528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	118	2	3.97267	4.503864999999999	5.03506	2.18461e-7	2.09185e-10	1.22927e-5	2.61674e-8
chr16	14857216	14857269	15560835	0	+	0.622642	(0.59,1]	chr16	1231935	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOMO1	ENSG00000103512.15	ENST00000287667.12:ENST00000620755.4:ENST00000610363.4:ENST00000566883.5:ENST00000566917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	4.34487	4.503735000000001	4.6626	0.0123678	2.85e-6	0.0705839	9.64791e-5
chr11	88312509	88312549	12533255	0	-	0.525	(0.49,0.53]	chr11	972544	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	4.32769	4.503705	4.67972	6.94757e-4	6.54988e-6	0.00876781	1.94116e-4
chr4	2514789	2514886	4683881	0	+	0.536082	(0.53,0.59]	chr4	388476	11	UTR3	UTR3:EXON_MRNA:INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000314289.13:ENST00000511600.5:ENST00000508235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.5393	4.5034600000000005	5.46762	6.46017e-4	1.97761e-5	0.00799743	5.29643e-4
chr1	30732953	30733050	915551	0	-	0.43299	(0.42,0.455]	chr1	95861	6	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	7	160	2	3.57602	4.50337	5.43072	2.90487e-7	4.10272e-12	1.56459e-5	7.90809e-10
chr1	154268756	154268855	480138	0	+	0.535354	(0.53,0.59]	chr1	49736	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1:ENST00000484819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.38627	4.503205	6.62014	0.00217924	6.02789e-9	0.0208941	5.00481e-7
chr12	120438112	120438126	13116042	0	+	0.357143	(0.33,0.36]	chr12	1023741	1	UTR5	UTR5:EXON_MRNA	COX6A1	ENSG00000111775.3	ENST00000550009.1:ENST00000229379.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.1284	4.503025	4.87765	0.00407303	2.2423e-4	0.0324137	0.00344776
chr17	4271528	4271627	16417093	0	-	0.353535	(0.33,0.36]	chr17	1337241	24	UTR3	UTR3:EXON_MRNA	UBE2G1	ENSG00000132388.13	ENST00000396981.7	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.1284	4.503025	4.87765	0.00407303	2.2423e-4	0.0324137	0.00344776
chr3	100386891	100386978	4325736	0	-	0.344828	(0.33,0.36]	chr3	360613	2	CDS	CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.1284	4.503025	4.87765	0.00407303	2.2423e-4	0.0324137	0.00344776
chr8	106697621	106697719	9997307	0	-	0.540816	(0.53,0.59]	chr8	753977	3	EXON_PSEUDO	EXON_PSEUDO	TAGLN2P1	ENSG00000253676.1	ENST00000524097.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	48	2	2.90978	4.502955	6.09613	0.00857883	3.47717e-7	0.0552386	1.62117e-5
chr12	113391338	113391435	13101768	0	+	0.515464	(0.49,0.53]	chr12	1022448	29	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.92528	4.502945	5.08061	1.00361e-4	3.34795e-6	0.00196575	1.10631e-4
chr14	75133322	75133420	14709059	0	-	0.357143	(0.33,0.36]	chr14	1152525	20	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	4.12803	4.50284	4.87765	2.2423e-4	2.90032e-5	0.00344776	7.24986e-4
chr19	10284128	10284224	17224630	0	+	0.625	(0.59,1]	chr19	1418500	2	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.28861	4.502605	5.7166	0.0028753	5.56053e-5	0.0256141	0.0011271
chr1	156294793	156294893	1313998	0	-	0.64	(0.59,1]	chr1	133385	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GLMP	ENSG00000198715.13	ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000476177.6:ENST00000368264.1:ENST00000479084.1:ENST00000484214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.34487	4.502275	4.65968	0.0123678	0.00413632	0.0705839	0.0324998
chr12	7143162	7143236	12717311	0	+	0.608108	(0.59,1]	chr12	987708	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000544584.1:ENST00000541770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.34487	4.502275	4.65968	0.0123678	0.00413632	0.0705839	0.0324998
chr19	35266445	35266532	17304097	0	+	0.597701	(0.59,1]	chr19	1430688	2	CDS	CDS:EXON_MRNA	LSR	ENSG00000105699.17	ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000597446.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.34487	4.502275	4.65968	0.0123678	0.00413632	0.0705839	0.0324998
chr2	86195382	86195472	2773318	0	-	0.711111	(0.59,1]	chr2	246405	1	UTR5	UTR5:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000410111.8:ENST00000442664.6:ENST00000409051.6:ENST00000620815.4:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.37323	4.5021450000000005	4.63106	0.00990413	0.00537945	0.061536	0.0406564
chr7	5603358	5603413	8112097	0	+	0.690909	(0.59,1]	chr7	620027	1	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.37323	4.5021450000000005	4.63106	0.00990413	0.00537945	0.061536	0.0406564
chr1	154550143	154550241	1303386	0	-	0.438776	(0.42,0.455]	chr1	131291	17	UTR3	UTR3:EXON_MRNA	UBE2Q1	ENSG00000160714.10	ENST00000292211.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.09155	4.50184	4.91213	1.75074e-4	2.98142e-5	0.00306313	6.7355e-4
chr1	160290491	160290588	1328672	0	-	0.536082	(0.53,0.59]	chr1	135965	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	4.30776	4.501605	4.69545	0.00407289	5.62788e-7	0.0324137	2.45035e-5
chr2	26283003	26283051	1686352	0	+	0.354167	(0.33,0.36]	chr2	164862	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.3227	4.500985	5.67927	0.00222616	1.93383e-6	0.0211992	6.97773e-5
chr16	30432	30528	15814897	0	-	0.447917	(0.42,0.455]	chr16	1259782	1	INTRON	INTRON	Z84812.4:IL9RP3	ENSG00000260803.1:ENSG00000226942.2	ENST00000568710.1:ENST00000442856.1	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	21	2	4.0898	4.500965000000001	4.91213	0.00698074	1.75074e-4	0.0473262	0.00306313
chr2	239914089	239914189	3244889	0	-	0.43	(0.42,0.455]	chr2	285963	7	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.0898	4.500965000000001	4.91213	0.00698074	1.75074e-4	0.0473262	0.00306313
chr12	122094562	122094662	13122648	0	+	0.5	(0.49,0.53]	chr12	1024773	149	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.96757	4.50069	5.03381	1.49689e-4	6.21316e-5	0.0024973	0.00134149
chrX	78013034	78013112	18745990	0	+	0.435897	(0.42,0.455]	chrX	1599714	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	4.20049	4.500565	4.80064	3.0479e-4	1.49765e-5	0.00472028	3.83096e-4
chr11	61299743	61299841	12403879	0	-	0.418367	(0.39,0.42]	chr11	960172	4	UTR3	UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	237	2	4.47858	4.50037	4.52216	1.86149e-10	2.63656e-12	2.62182e-8	5.34484e-10
chr8	124543205	124543279	9593471	0	+	0.527027	(0.49,0.53]	chr8	727758	2	CDS	CDS:UTR3:EXON_MRNA	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000518008.5:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1:ENST00000518657.6:ENST00000678801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	4.30878	4.500315	4.69185	7.12421e-6	6.32597e-9	2.28404e-4	5.20277e-7
chr7	29071838	29071904	8745011	0	-	0.393939	(0.39,0.42]	chr7	667267	2	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6:ENST00000448959.5	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.32811	4.500285	5.67246	0.00182819	7.14689e-11	0.0183913	1.01153e-8
chr1	155172564	155172650	1306466	0	-	0.44186	(0.42,0.455]	chr1	131777	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRTCAP2:RP11-201K10.3	ENSG00000163463.13:ENSG00000273088.2	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000473363.3:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	79	2	4.43095	4.499915	4.56888	1.1745e-6	5.23167e-8	4.57782e-5	3.52388e-6
chr11	60900636	60900691	12402802	0	-	0.436364	(0.42,0.455]	chr11	959912	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr12	96018832	96018903	13485154	0	-	0.422535	(0.42,0.455]	chr12	1060526	2	CDS	CDS:UTR3:EXON_MRNA	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr13	24122064	24122161	13932392	0	-	0.43299	(0.42,0.455]	chr13	1093069	1	EXON_PSEUDO	EXON_PSEUDO	IPO7P2	ENSG00000225674.1	ENST00000451446.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr15	41742813	41742903	14888688	0	+	0.444444	(0.42,0.455]	chr15	1169743	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	MGA	ENSG00000174197.17	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.12:ENST00000564190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr4	75790642	75790719	4892905	0	+	0.428571	(0.42,0.455]	chr4	403039	1	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr6	97145717	97145816	7854162	0	-	0.434343	(0.42,0.455]	chr6	601416	37	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr6	143941802	143941895	8005511	0	-	0.451613	(0.42,0.455]	chr6	611798	4	CDS	CDS:EXON_MRNA	PLAGL1	ENSG00000118495.20	ENST00000649307.1:ENST00000674357.1:ENST00000360537.6:ENST00000437412.5:ENST00000444202.5:ENST00000416623.5:ENST00000354765.6:ENST00000392307.2:ENST00000649211.1:ENST00000367572.3:ENST00000625622.2:ENST00000650125.1:ENST00000647880.1:ENST00000367571.3:ENST00000417959.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chrX	124086546	124086620	18852436	0	+	0.432432	(0.42,0.455]	chrX	1606302	1	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.24133	4.499305	4.75728	0.00326918	5.3817e-4	0.0282494	0.00686676
chr6	152970618	152970709	8029499	0	-	0.252747	[0,0.29]	chr6	614119	2	UTR3	UTR3:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	3.11257	4.49897	5.88537	0.00120521	3.12497e-7	0.0134827	1.48071e-5
chr6	32185799	32185896	7664818	0	-	0.587629	(0.53,0.59]	chr6	586181	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PBX2:XXbac-BPG300A18.13	ENSG00000204304.12:ENSG00000273333.2	ENST00000375050.6:ENST00000559458.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	43	2	3.30943	4.49877	5.68811	0.0018255	5.40688e-6	0.0183913	1.64762e-4
chr7	6466238	6466323	8664713	0	-	0.541176	(0.53,0.59]	chr7	662832	3	CDS	CDS:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	240	2	3.81737	4.49858	5.17979	8.97065e-7	1e-12	4.03386e-5	2.25522e-10
chr1	25402660	25402726	904199	0	-	0.590909	(0.59,1]	chr1	94038	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1:ENST00000495048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.19	4.498545	5.80709	0.0039188	4.94887e-5	0.0314356	0.00112479
chr1	32669230	32669293	130296	0	+	0.444444	(0.42,0.455]	chr1	16090	1	CDS	CDS:UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000531983.1:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	3.94929	4.498205	5.04712	2.78395e-6	1.96283e-8	9.49154e-5	1.51544e-6
chr1	37969353	37969408	950089	0	-	0.527273	(0.49,0.53]	chr1	100077	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	3.72114	4.497955	5.27477	4.14521e-5	1.38104e-5	8.8376e-4	3.94563e-4
chr15	78544845	78544945	15040549	0	+	0.4	(0.39,0.42]	chr15	1183215	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559906.1:ENST00000559154.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	4.25375	4.497730000000001	4.74171	1.03195e-5	2.6028e-7	2.84226e-4	1.4243e-5
chr2	218275474	218275574	3186643	0	-	0.51	(0.49,0.53]	chr2	279899	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	4.45286	4.497465	4.54207	1.36824e-6	5.18628e-8	5.72609e-5	3.19006e-6
chr1	43977505	43977600	169385	0	+	0.4	(0.39,0.42]	chr1	21856	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	3.69976	4.49739	5.29502	1.68146e-5	1.95428e-6	4.64895e-4	7.00948e-5
chr10	46010714	46010812	11470977	0	-	0.520408	(0.49,0.53]	chr10	874843	6	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	4.25722	4.49699	4.73676	1.00699e-5	3.38109e-7	3.03291e-4	1.5857e-5
chr16	70271780	70271876	15997088	0	-	0.541667	(0.53,0.59]	chr16	1284672	1	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.64475	4.4968900000000005	6.34903	0.00453071	5.2841e-8	0.0351187	3.2354e-6
chr5	140645586	140645678	6871645	0	-	0.478261	(0.455,0.49]	chr5	526113	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	NDUFA2	ENSG00000131495.9	ENST00000510680.1:ENST00000252102.9:ENST00000512088.1:ENST00000502960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	67	2	2.40508	4.496865	6.58865	0.0022198	2.75015e-9	0.0211918	2.54234e-7
chr12	53153830	53153924	12885192	0	+	0.468085	(0.455,0.49]	chr12	1002039	7	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P4	ENSG00000257790.1	ENST00000550578.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr17	42571795	42571891	16229233	0	+	0.479167	(0.455,0.49]	chr17	1313143	3	UTR3	UTR3:EXON_MRNA	MLX	ENSG00000108788.12	ENST00000246912.8:ENST00000346833.8:ENST00000590050.5:ENST00000435881.7:ENST00000588320.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr2	120098151	120098251	2029313	0	+	0.47	(0.455,0.49]	chr2	191930	45	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr20	62278666	62278764	17861082	0	+	0.489796	(0.455,0.49]	chr20	1509921	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr3	113795146	113795204	3675967	0	+	0.482759	(0.455,0.49]	chr3	314467	2	CDS	CDS:UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr3	137881556	137881654	3765648	0	+	0.459184	(0.455,0.49]	chr3	322089	14	EXON_PSEUDO	EXON_PSEUDO	HSPA8P9	ENSG00000241478.1	ENST00000485881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr5	132217751	132217848	6833715	0	-	0.463918	(0.455,0.49]	chr5	522736	1	CDS	CDS:EXON_MRNA:PRIMIRNA	P4HA2:MIR6830	ENSG00000072682.20:ENSG00000283678.1	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5:ENST00000395164.5:ENST00000453286.5:ENST00000418055.5:ENST00000478055.1:ENST00000416053.5:ENST00000636015.1:ENST00000428841.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr7	103575626	103575705	8964038	0	-	0.468354	(0.455,0.49]	chr7	686242	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chrX	9569440	9569540	18567791	0	+	0.47	(0.455,0.49]	chrX	1586476	85	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.0204	4.49649	4.97258	0.00736097	1.84876e-4	0.0490627	0.00296795
chr13	46784251	46784350	14012348	0	-	0.393939	(0.39,0.42]	chr13	1098870	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	142	2	3.54423	4.49604	5.44785	1.48042e-6	2.87803e-12	6.1171e-5	5.79396e-10
chr19	1088518	1088615	17417431	0	-	0.659794	(0.59,1]	chr19	1452090	21	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000590060.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000586215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	112	2	2.22725	4.495885	6.76452	0.00535937	1.3389e-7	0.0406564	7.1964e-6
chr15	78897359	78897456	15042658	0	+	0.329897	(0.29,0.33]	chr15	1183475	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	3.85216	4.49575	5.13934	1.03145e-5	8.37337e-9	3.09366e-4	6.64842e-7
chr17	81894512	81894577	16381542	0	+	0.538462	(0.53,0.59]	chr17	1332112	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR5:EXON_MRNA	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000582222.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000584314.5:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000584197.5:ENST00000583839.1:ENST00000578544.1:ENST00000575195.2:ENST00000585259.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.43279	4.4956949999999996	4.5586	0.0026472	0.00161229	0.0231864	0.0169168
chr6	2833859	2833935	7570212	0	-	0.565789	(0.53,0.59]	chr6	577589	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.43279	4.4956949999999996	4.5586	0.0026472	0.00161229	0.0231864	0.0169168
chr1	28535257	28535318	117387	0	+	0.57377	(0.53,0.59]	chr1	14353	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000430407.1:ENST00000429051.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.43863	4.495685	4.55274	0.00254763	0.00167999	0.0233955	0.0164993
chr1	37999256	37999312	950349	0	-	0.553571	(0.53,0.59]	chr1	100166	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5:ENST00000483132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.43863	4.495685	4.55274	0.00254763	0.00167999	0.0233955	0.0164993
chr11	47245757	47245834	12385692	0	-	0.545455	(0.53,0.59]	chr11	956600	2	CDS	CDS:EXON_MRNA	ACP2	ENSG00000134575.13	ENST00000672073.1:ENST00000672636.2:ENST00000256997.9:ENST00000529444.7:ENST00000673184.1:ENST00000527256.7:ENST00000672075.1:ENST00000533929.7:ENST00000673511.1:ENST00000673604.1:ENST00000672787.1:ENST00000672166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.43863	4.495685	4.55274	0.00254763	0.00167999	0.0233955	0.0164993
chr12	57532263	57532315	13356861	0	-	0.557692	(0.53,0.59]	chr12	1052772	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5:ENST00000550750.2:ENST00000551611.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.43863	4.495685	4.55274	0.00254763	0.00167999	0.0233955	0.0164993
chr17	76142562	76142661	16687594	0	-	0.545455	(0.53,0.59]	chr17	1374345	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000589912.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.43863	4.495685	4.55274	0.00254763	0.00167999	0.0233955	0.0164993
chr9	136208727	136208827	10888818	0	-	0.59	(0.53,0.59]	chr9	826967	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.43863	4.495685	4.55274	0.00254763	0.00167999	0.0233955	0.0164993
chr11	27890833	27890933	12317027	0	-	0.37	(0.36,0.39]	chr11	952778	21	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	3.18642	4.49568	5.80494	0.00359152	9.78955e-7	0.0302391	3.91899e-5
chr7	144647284	144647383	9120716	0	-	0.474747	(0.455,0.49]	chr7	696680	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	TPK1:EEF1A1P10	ENSG00000196511.14:ENSG00000243746.1	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5:ENST00000475365.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	6	132	2	4.15393	4.495565	4.8372	1.24477e-7	1.50064e-9	7.5922e-6	1.50704e-7
chr1	149851506	149851565	464860	0	+	0.745763	(0.59,1]	chr1	46806	1	UTR3	UTR3:EXON_MRNA	H2AC19	ENSG00000272196.2	ENST00000607355.2	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.81459	4.495355	6.17612	0.00278977	4.87365e-6	0.0249234	1.51951e-4
chr7	66948618	66948694	8307638	0	+	0.618421	(0.59,1]	chr7	633379	2	CDS	CDS:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.11647	4.495325	5.87418	0.00535979	2.5071e-5	0.0406564	5.82734e-4
chr1	148170961	148171060	457137	0	+	0.424242	(0.42,0.455]	chr1	45544	65	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.70273	4.495279999999999	5.28783	0.0215502	2.17539e-5	0.102904	5.73422e-4
chr8	74336181	74336281	9408745	0	+	0.45	(0.42,0.455]	chr8	718227	121	INTRON	INTRON	GDAP1	ENSG00000104381.14	ENST00000675821.1:ENST00000521096.6:ENST00000676377.1:ENST00000675220.1:ENST00000674612.1:ENST00000676143.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	4.4415	4.4947099999999995	4.54792	9.66045e-4	2.94164e-6	0.0115185	9.91141e-5
chr1	156009594	156009650	1313065	0	-	0.642857	(0.59,1]	chr1	133081	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	188	2	3.88848	4.494675	5.10087	1.89725e-6	2.266e-7	6.87959e-5	1.26994e-5
chr6	32116703	32116759	7664405	0	-	0.446429	(0.42,0.455]	chr6	585978	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	61	2	4.48522	4.49467	4.50412	2.15617e-6	1.67683e-6	7.62296e-5	6.81279e-5
chr5	123023784	123023874	6791621	0	-	0.444444	(0.42,0.455]	chr5	520655	7	UTR3	UTR3:EXON_MRNA	PPIC	ENSG00000168938.6	ENST00000306442.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.97371	4.494665	5.01562	1.01971e-4	6.07552e-5	0.0019861	0.00121305
chr7	93219100	93219198	8927919	0	-	0.44898	(0.42,0.455]	chr7	681291	1	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.97371	4.494665	5.01562	1.01971e-4	6.07552e-5	0.0019861	0.00121305
chr7	6024023	6024116	8662404	0	-	0.494624	(0.49,0.53]	chr7	662531	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1	protein_coding	protein_coding	protein_coding	protein_coding	36	768	2	4.23173	4.494605	4.75748	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	129111474	129111571	13153751	0	+	0.525773	(0.49,0.53]	chr12	1027739	20	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5:ENST00000508925.6:ENST00000540739.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	38	2	3.8233	4.494435	5.16557	1.44192e-4	6.36135e-5	0.00242438	0.00136069
chr6	7884423	7884488	7588001	0	-	0.476923	(0.455,0.49]	chr6	578862	2	CDS	CDS:UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2:ENST00000473453.2:ENST00000475802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	4.48006	4.4940549999999995	4.50805	0.00122223	3.88353e-8	0.0135383	2.4824e-6
chr5	151765858	151765944	6920067	0	-	0.337209	(0.33,0.36]	chr5	530227	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	ATOX1:RPLP1P6	ENSG00000177556.12:ENSG00000213433.5	ENST00000524142.5:ENST00000518134.1:ENST00000473923.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:processed_transcript:transcribed_processed_pseudogene	1	31	2	3.9015	4.494025	5.08655	9.11613e-5	4.6453e-5	0.00168187	0.00106753
chr1	212776671	212776771	1482737	0	-	0.28	[0,0.29]	chr1	149640	100	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	4.25523	4.493455	4.73168	3.88478e-4	1.88307e-5	0.00534839	5.10675e-4
chr1	116544310	116544408	1243639	0	-	0.346939	(0.33,0.36]	chr1	121883	1	CDS	CDS:EXON_MRNA	CD58	ENSG00000116815.16	ENST00000369489.10:ENST00000464088.5:ENST00000457047.6:ENST00000526981.1:ENST00000369487.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.25272	4.4932549999999996	5.73379	2.63256e-4	5.95199e-7	0.00393206	2.84227e-5
chr11	14513816	14513887	12282150	0	-	0.464789	(0.455,0.49]	chr11	949718	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1:ENST00000531023.1:ENST00000533331.5:ENST00000529524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.13787	4.49244	5.84701	4.66183e-4	5.98588e-7	0.00616585	2.85128e-5
chr5	181238127	181238227	7008953	0	-	0.52	(0.49,0.53]	chr5	537313	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000514455.5:ENST00000507756.5:ENST00000502905.5:ENST00000509148.1:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	832	2	4.1321	4.492305	4.85251	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	58252426	58252525	1830054	0	+	0.444444	(0.42,0.455]	chr2	174311	11	EXON_PSEUDO	EXON_PSEUDO	EIF3FP3	ENSG00000233426.3	ENST00000434851.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	51	2	3.87233	4.492255	5.11218	6.01815e-5	4.86008e-6	0.00130886	1.51731e-4
chr2	10785030	10785130	2510732	0	-	0.35	(0.33,0.36]	chr2	226669	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.33896	4.4922450000000005	4.64553	0.00182033	6.69086e-4	0.0183913	0.00820018
chr22	38818451	38818549	18512177	0	-	0.336735	(0.33,0.36]	chr22	1580427	1	UTR3	UTR3:EXON_MRNA	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.33896	4.4922450000000005	4.64553	0.00182033	6.69086e-4	0.0183913	0.00820018
chr9	70188660	70188750	10676790	0	-	0.333333	(0.33,0.36]	chr9	808374	2	EXON_SMALL	EXON_SMALL	RNU2-5P	ENSG00000222465.1	ENST00000410533.1	snRNA	snRNA	snRNA	snRNA	0	18	2	4.33896	4.4922450000000005	4.64553	0.00182033	6.69086e-4	0.0183913	0.00820018
chr12	118416933	118417033	13109375	0	+	0.42	(0.39,0.42]	chr12	1023199	26	UTR3	UTR3:EXON_MRNA	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.66467	4.492179999999999	5.31969	3.60066e-4	2.68682e-5	0.00544157	6.19143e-4
chr6	31507465	31507531	7115396	0	+	0.409091	(0.39,0.42]	chr6	545673	2	CDS	CDS:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7:ENST00000494577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.66467	4.492179999999999	5.31969	3.60066e-4	2.68682e-5	0.00544157	6.19143e-4
chr11	18402932	18403013	11831512	0	+	0.530864	(0.53,0.59]	chr11	906017	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	394	2	4.28818	4.49217	4.69616	1.88428e-10	1e-12	2.64322e-8	2.25522e-10
chr1	155169480	155169539	1306433	0	-	0.525424	(0.49,0.53]	chr1	131770	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	KRTCAP2:RP11-201K10.3	ENSG00000163463.13:ENSG00000273088.2	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000473363.3:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	116	2	3.90749	4.49178	5.07607	6.83837e-8	1.87952e-8	4.03413e-6	1.45941e-6
chr1	173488053	173488148	548623	0	+	0.378947	(0.36,0.39]	chr1	58305	3	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	8	169	2	4.12058	4.49175	4.86292	8.41577e-9	3.86469e-12	7.31513e-7	7.51433e-10
chr1	160349060	160349122	496702	0	+	0.516129	(0.49,0.53]	chr1	53446	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000437169.5:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000467837.5:ENST00000491332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.58926	4.491625	5.39399	3.32125e-5	1.71804e-5	7.33555e-4	4.72485e-4
chr20	32145149	32145209	17752417	0	+	0.5	(0.49,0.53]	chr20	1498482	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.58926	4.491625	5.39399	3.32125e-5	1.71804e-5	7.33555e-4	4.72485e-4
chr7	104667748	104667844	8445825	0	+	0.510417	(0.49,0.53]	chr7	645153	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	LHFPL3:EIF4BP6	ENSG00000187416.13:ENSG00000197258.5	ENST00000424859.7:ENST00000401970.3:ENST00000683240.1:ENST00000431936.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	50	2	3.58926	4.491625	5.39399	3.32125e-5	1.71804e-5	7.33555e-4	4.72485e-4
chr1	147204542	147204639	1274332	0	-	0.453608	(0.42,0.455]	chr1	126416	14	EXON_PSEUDO	EXON_PSEUDO:INTRON	FMO5:CCT8P1	ENSG00000131781.13:ENSG00000226015.2	ENST00000527849.5:ENST00000441068.6:ENST00000578284.5:ENST00000254090.9:ENST00000369272.7:ENST00000413611.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	23	2	3.8515	4.491595	5.13169	0.0119089	8.60227e-5	0.0686664	0.00160731
chr1	227767542	227767630	742794	0	+	0.431818	(0.42,0.455]	chr1	74973	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	3.8515	4.491595	5.13169	0.0119089	8.60227e-5	0.0686664	0.00160731
chr5	27111621	27111674	5910703	0	+	0.433962	(0.42,0.455]	chr5	463567	2	EXON_SMALL	EXON_SMALL	RNU6-738P	ENSG00000207261.1	ENST00000384531.1	snRNA	snRNA	snRNA	snRNA	0	23	2	3.8515	4.491595	5.13169	0.0119089	8.60227e-5	0.0686664	0.00160731
chr3	133815657	133815726	3752463	0	+	0.391304	(0.39,0.42]	chr3	321394	2	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.93996	4.491235	5.04251	0.00841622	2.52401e-8	0.054565	1.72157e-6
chr12	31252510	31252597	13279779	0	-	0.655172	(0.59,1]	chr12	1041226	7	EXON_PSEUDO	EXON_PSEUDO	RP11-627K11.1	ENSG00000243517.1	ENST00000495623.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	208	2	4.45082	4.491095	4.53137	4.37454e-7	1.94432e-7	2.2018e-5	9.92968e-6
chr4	99076465	99076552	5548268	0	-	0.551724	(0.53,0.59]	chr4	443159	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	3.34735	4.491045	5.63474	1.46925e-4	7.53339e-6	0.0026854	2.17987e-4
chr6	170537233	170537286	8091021	0	-	0.584906	(0.53,0.59]	chr6	618028	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.34735	4.491045	5.63474	1.46925e-4	7.53339e-6	0.0026854	2.17987e-4
chr9	128990119	128990172	10482665	0	+	0.415094	(0.39,0.42]	chr9	791103	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	3.60131	4.490815	5.38032	4.60576e-4	9.82886e-6	0.00611208	2.98194e-4
chr1	21841538	21841605	890818	0	-	0.626866	(0.59,1]	chr1	92312	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.30585	4.49011	5.67437	7.41605e-5	6.83706e-5	0.00156055	0.00132577
chr12	69272776	69272875	12941728	0	+	0.313131	(0.29,0.33]	chr12	1008771	34	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	3.85216	4.489995	5.12783	5.31593e-5	1.03145e-5	0.00108035	3.09366e-4
chr6	44233966	44234054	7161530	0	+	0.579545	(0.53,0.59]	chr6	553816	6	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding	7	193	2	3.56555	4.48996	5.41437	4.02884e-7	9.18798e-12	2.05298e-5	1.61244e-9
chr3	141913743	141913836	3790062	0	+	0.365591	(0.36,0.39]	chr3	323475	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	136	2	4.18595	4.48986	4.79377	1.73959e-9	9.35393e-10	1.85195e-7	9.90715e-8
chr7	30923529	30923629	8206208	0	+	0.59	(0.53,0.59]	chr7	626039	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000482461.1:ENST00000409899.5:ENST00000409611.1:ENST00000651610.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	4.42075	4.489675	4.5586	0.00161229	8.32123e-8	0.0169168	4.76997e-6
chrX	53431503	53431570	19077090	0	-	0.597015	(0.59,1]	chrX	1622605	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSD17B10	ENSG00000072506.14	ENST00000375304.9:ENST00000684251.1:ENST00000477706.1:ENST00000168216.11:ENST00000684692.1:ENST00000375298.4:ENST00000682365.1:ENST00000495986.2:ENST00000684503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	4.2353	4.48954	4.74378	0.0165254	0.00312942	0.0873033	0.0264364
chr22	23766127	23766148	18448270	0	-	0.47619	(0.455,0.49]	chr22	1573341	1	CDS	CDS:UTR3:EXON_MRNA	CHCHD10	ENSG00000250479.9	ENST00000484558.3:ENST00000401675.7:ENST00000520222.1:ENST00000523865.1:ENST00000517886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.57525	4.489475	5.4037	5.24878e-4	1.20695e-5	0.00677371	3.52389e-4
chr15	99259717	99259816	15142859	0	+	0.393939	(0.39,0.42]	chr15	1190792	22	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	3	139	2	2.48908	4.48939	6.4897	0.0101318	1e-12	0.0626311	2.25522e-10
chr19	2073000	2073099	17421620	0	-	0.686869	(0.59,1]	chr19	1453173	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8:ENST00000592143.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.26354	4.489319999999999	4.7151	0.0134233	0.00412279	0.0743429	0.0325842
chr19	3544808	3544908	17427562	0	-	0.69	(0.59,1]	chr19	1454086	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MFSD12	ENSG00000161091.14	ENST00000615073.4:ENST00000398558.8:ENST00000355415.7:ENST00000588918.5:ENST00000389395.7:ENST00000589063.5:ENST00000589995.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	4.26354	4.489319999999999	4.7151	0.0134233	0.00412279	0.0743429	0.0325842
chr5	111129034	111129132	6144733	0	+	0.316327	(0.29,0.33]	chr5	480259	23	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.76009	4.489224999999999	5.21836	3.08518e-4	3.15783e-5	0.00476847	7.02218e-4
chr8	86560800	86560900	9457732	0	+	0.33	(0.29,0.33]	chr8	720297	25	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.76009	4.489224999999999	5.21836	3.08518e-4	3.15783e-5	0.00476847	7.02218e-4
chr17	2711373	2711461	16407725	0	-	0.727273	(0.59,1]	chr17	1335672	3	SS5_PROX	SS5_PROX:INTRON	CLUH	ENSG00000132361.18	ENST00000570628.6:ENST00000574426.7:ENST00000435359.5:ENST00000651024.2:ENST00000576885.5:ENST00000571566.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.78188	4.48918	5.19648	7.35336e-4	3.33896e-4	0.00921643	0.00472923
chr11	62792386	62792475	12410985	0	-	0.516854	(0.49,0.53]	chr11	961597	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	NXF1:MIR6514	ENSG00000162231.14:ENSG00000274066.1	ENST00000531709.6:ENST00000294172.7:ENST00000532297.5:ENST00000622549.1:ENST00000527902.5:ENST00000533048.5:ENST00000533499.1:ENST00000527497.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	23	2	3.8967	4.488655	5.08061	0.0128791	1.00361e-4	0.0725185	0.00196575
chr2	157295662	157295730	2152483	0	+	0.397059	(0.39,0.42]	chr2	198591	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.32811	4.488645	5.64918	0.00182819	3.47137e-6	0.0183913	1.13687e-4
chr17	59666171	59666240	16295287	0	+	0.463768	(0.455,0.49]	chr17	1321666	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	95	2	3.31171	4.48863	5.66555	1.87327e-4	8.24432e-11	0.00325006	1.14548e-8
chr1	236901901	236902000	771968	0	+	0.484848	(0.455,0.49]	chr1	77942	44	UTR3	UTR3:EXON_MRNA:INTRON	MTR	ENSG00000116984.15	ENST00000366577.10:ENST00000674797.2:ENST00000650888.1:ENST00000681813.1:ENST00000652483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.10535	4.488605	4.87186	0.0064531	2.33781e-4	0.0450905	0.00385436
chr12	34026052	34026147	12822287	0	+	0.410526	(0.39,0.42]	chr12	995601	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000541178.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.51636	4.488605	5.46085	6.99837e-4	5.81708e-6	0.00846751	1.921e-4
chr17	2183978	2184077	16404697	0	-	0.474747	(0.455,0.49]	chr17	1335209	108	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000572369.5:ENST00000575176.5:ENST00000572205.5:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.10535	4.488605	4.87186	0.0064531	2.33781e-4	0.0450905	0.00385436
chr7	128855198	128855256	8522529	0	+	0.482759	(0.455,0.49]	chr7	650461	1	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.10535	4.488605	4.87186	0.0064531	2.33781e-4	0.0450905	0.00385436
chr7	75979450	75979514	8342108	0	+	0.609375	(0.59,1]	chr7	636153	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000426184.1:ENST00000475509.1:ENST00000439297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.56392	4.488585	5.41325	8.86707e-4	3.01546e-4	0.0101815	0.00472028
chr20	38952910	38953008	17787119	0	+	0.357143	(0.33,0.36]	chr20	1503191	5	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.72365	4.488365	5.25308	3.19155e-4	2.94355e-5	0.00491578	6.67979e-4
chr21	42848334	42848433	18270839	0	-	0.626263	(0.59,1]	chr21	1549336	47	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.9228	4.48788	6.05296	0.00981698	1.41714e-5	0.0612992	4.01358e-4
chr15	73994742	73994812	15024974	0	+	0.528571	(0.49,0.53]	chr15	1180821	2	UTR5	UTR5:EXON_MRNA	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569477.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000567543.5:ENST00000563500.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.94177	4.48779	5.03381	0.0104929	1.49689e-4	0.063428	0.0024973
chr3	184181695	184181755	3948227	0	+	0.516667	(0.49,0.53]	chr3	332029	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000411763.6:ENST00000439647.5:ENST00000432591.5:ENST00000621863.4:ENST00000490151.6:ENST00000461733.5:ENST00000476434.1:ENST00000463935.1:ENST00000480260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	3.94177	4.48779	5.03381	0.0104929	1.49689e-4	0.063428	0.0024973
chr17	7574545	7574581	16105639	0	+	0.388889	(0.36,0.39]	chr17	1296946	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000584054.5:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000580461.5:ENST00000580886.5:ENST00000579139.1:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000582213.5:ENST00000579085.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581770.5:ENST00000577738.5:ENST00000581384.5:ENST00000577929.1:ENST00000578324.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	5	58	2	2.87583	4.487745	6.09966	8.70639e-5	1.07942e-7	0.00177086	5.96435e-6
chr1	182384404	182384504	1401220	0	-	0.53	(0.49,0.53]	chr1	141691	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000461447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	323	2	3.80487	4.4875799999999995	5.17029	1.29725e-8	1e-12	1.06051e-6	2.25522e-10
chr14	22922442	22922500	14527905	0	-	0.465517	(0.455,0.49]	chr14	1138129	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5:ENST00000557758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.20189	4.487534999999999	4.77318	0.00397662	4.7888e-4	0.0322851	0.00628636
chr14	68421796	68421896	14684576	0	-	0.49	(0.455,0.49]	chr14	1149918	2	EXON_PSEUDO	EXON_PSEUDO	PPIAP6	ENSG00000258477.1	ENST00000557078.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.20189	4.487534999999999	4.77318	0.00397662	4.7888e-4	0.0322851	0.00628636
chr2	96298602	96298702	2790531	0	-	0.46	(0.455,0.49]	chr2	248831	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.20189	4.487534999999999	4.77318	0.00397662	4.7888e-4	0.0322851	0.00628636
chr6	16250283	16250367	7067393	0	+	0.464286	(0.455,0.49]	chr6	540885	1	CDS	CDS:EXON_MRNA	GMPR	ENSG00000137198.10	ENST00000259727.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.20189	4.487534999999999	4.77318	0.00397662	4.7888e-4	0.0322851	0.00628636
chr9	129822580	129822668	10867754	0	-	0.465909	(0.455,0.49]	chr9	824283	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1A	ENSG00000136827.12	ENST00000351698.5:ENST00000651202.1:ENST00000473604.2:ENST00000473084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.20189	4.487534999999999	4.77318	0.00397662	4.7888e-4	0.0322851	0.00628636
chr1	21848718	21848794	890905	0	-	0.657895	(0.59,1]	chr1	92358	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.05674	4.487185	5.91763	9.4094e-4	2.85329e-5	0.0106352	7.16403e-4
chr8	58570886	58570965	9351153	0	+	0.468354	(0.455,0.49]	chr8	715129	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDCBP	ENSG00000137575.12	ENST00000522243.5:ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000522843.5:ENST00000630925.1:ENST00000447267.4:ENST00000520228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	3.46389	4.48716	5.51043	9.14164e-4	9.08728e-6	0.0110519	2.53877e-4
chr6	17624742	17624833	7618968	0	-	0.494505	(0.49,0.53]	chr6	580522	3	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.03034	4.486985	4.94363	2.3417e-4	4.26396e-5	0.00355764	9.97006e-4
chr3	127615861	127615955	3723544	0	+	0.542553	(0.53,0.59]	chr3	318270	1	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.39416	4.486735	5.57931	0.00126006	1.05602e-5	0.013837	2.89015e-4
chr3	6578137	6578237	3283297	0	+	0.35	(0.33,0.36]	chr3	288910	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AC069277.2	ENSG00000189229.11	ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000414438.2:ENST00000658468.1:ENST00000669512.1:ENST00000667028.1:ENST00000655541.1:ENST00000668643.1:ENST00000671568.1:ENST00000671036.1:ENST00000669798.1:ENST00000655753.1:ENST00000655856.1:ENST00000658398.1:ENST00000661518.1:ENST00000661279.1:ENST00000655495.1:ENST00000663041.1:ENST00000659827.1:ENST00000667716.1:ENST00000662508.1:ENST00000668416.1:ENST00000658133.1:ENST00000342990.4:ENST00000660054.1:ENST00000671370.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	4.37849	4.48653	4.59457	8.56859e-7	1.08837e-7	3.50542e-5	6.77188e-6
chr1	147179031	147179126	453651	0	+	0.421053	(0.42,0.455]	chr1	45093	13	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	7	170	2	4.29898	4.486465	4.67395	1.06931e-8	4.10108e-11	9.05355e-7	6.17252e-9
chr17	1680928	1680991	16401619	0	-	0.428571	(0.42,0.455]	chr17	1334967	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000574728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	137	2	3.94124	4.486245	5.03125	4.28825e-8	2.44222e-10	2.98666e-6	3.00334e-8
chr11	61795555	61795649	11971302	0	+	0.56383	(0.53,0.59]	chr11	917378	2	CDS	CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000535723.1:ENST00000574708.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr11	71434772	71434863	12444393	0	-	0.582418	(0.53,0.59]	chr11	966968	5	UTR3	UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr14	75651829	75651889	14709938	0	-	0.533333	(0.53,0.59]	chr14	1152594	2	CDS	CDS:EXON_MRNA	ERG28	ENSG00000133935.7	ENST00000256319.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr15	34241284	34241337	15203808	0	-	0.584906	(0.53,0.59]	chr15	1196745	2	CDS	CDS:EXON_MRNA	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000560023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr16	31489762	31489859	15917460	0	-	0.587629	(0.53,0.59]	chr16	1275990	4	UTR3	UTR3:EXON_MRNA	RUSF1	ENSG00000140688.17	ENST00000570164.5:ENST00000327237.7:ENST00000568491.1:ENST00000430477.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr17	44074968	44075027	16234037	0	+	0.576271	(0.53,0.59]	chr17	1314325	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr3	33093026	33093120	4111933	0	-	0.56383	(0.53,0.59]	chr3	343556	2	CDS	CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr5	882955	883053	6421823	0	-	0.571429	(0.53,0.59]	chr5	500316	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr8	97029402	97029494	9504354	0	+	0.532609	(0.53,0.59]	chr8	722620	1	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000522617.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.30195	4.4856549999999995	4.66936	0.00421989	0.00103174	0.0328662	0.0121443
chr1	150472540	150472639	468018	0	+	0.565657	(0.53,0.59]	chr1	47283	21	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.30776	4.48562	4.66348	0.00407289	0.00107799	0.0324137	0.0118238
chr11	65175194	65175293	12421740	0	-	0.545455	(0.53,0.59]	chr11	963793	12	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PGAM1P8	ENSG00000255200.1	ENST00000534819.1:ENST00000526979.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	23	2	4.30776	4.48562	4.66348	0.00407289	0.00107799	0.0324137	0.0118238
chr12	120138775	120138856	13579108	0	-	0.580247	(0.53,0.59]	chr12	1068574	2	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000547263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.30776	4.48562	4.66348	0.00407289	0.00107799	0.0324137	0.0118238
chr16	23523381	23523480	15894966	0	-	0.525253	(0.49,0.53]	chr16	1272199	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EARS2	ENSG00000103356.18	ENST00000449606.7:ENST00000674054.1:ENST00000564987.1:ENST00000564776.1:ENST00000564759.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.07719	4.48562	4.89405	0.0074411	2.57983e-4	0.0492519	0.00419998
chr16	27226719	27226777	15898850	0	-	0.568965	(0.53,0.59]	chr16	1272847	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSMCE1	ENSG00000169189.17	ENST00000361439.9:ENST00000569236.5:ENST00000565070.5:ENST00000565384.1:ENST00000562039.1:ENST00000566087.5:ENST00000563273.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.30776	4.48562	4.66348	0.00407289	0.00107799	0.0324137	0.0118238
chr17	72649169	72649268	16669301	0	-	0.585859	(0.53,0.59]	chr17	1371726	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A11	ENSG00000133195.11	ENST00000255559.7:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.30776	4.48562	4.66348	0.00407289	0.00107799	0.0324137	0.0118238
chr3	49153146	49153244	4173006	0	-	0.571429	(0.53,0.59]	chr3	350654	1	EXON_PSEUDO	EXON_PSEUDO	LAMB2P1	ENSG00000270441.1	ENST00000603877.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	23	2	4.30776	4.48562	4.66348	0.00407289	0.00107799	0.0324137	0.0118238
chr17	28574775	28574856	16485932	0	-	0.54321	(0.53,0.59]	chr17	1347754	2	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5:ENST00000435638.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.17542	4.48535	5.79528	3.78824e-4	2.61912e-6	0.00525548	9.89086e-5
chr16	2821031	2821109	15495165	0	+	0.525641	(0.49,0.53]	chr16	1227876	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000570629.5:ENST00000570594.5:ENST00000574813.5:ENST00000577043.1:ENST00000575199.1:ENST00000574265.1:ENST00000575739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.87268	4.485225	6.09777	0.00175078	1.87775e-7	0.0180053	9.63683e-6
chr12	103934091	103934160	13056770	0	+	0.463768	(0.455,0.49]	chr12	1017311	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	557	2	4.13053	4.485175	4.83982	4.19314e-10	1e-12	5.36006e-8	2.25522e-10
chr2	157259439	157259536	2152118	0	+	0.463918	(0.455,0.49]	chr2	198573	14	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.92901	4.48504	6.04107	0.00141135	2.38066e-7	0.0151901	1.17461e-5
chr1	39571229	39571329	953037	0	-	0.52	(0.49,0.53]	chr1	100577	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chr14	23034881	23034900	14528854	0	-	0.526316	(0.49,0.53]	chr14	1138399	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PSMB5	ENSG00000100804.19	ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chr16	16265042	16265118	15569143	0	+	0.526316	(0.49,0.53]	chr16	1232988	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1:ENST00000576269.1:ENST00000576460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chr17	7508325	7508400	16105247	0	+	0.52	(0.49,0.53]	chr17	1296765	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chr17	60786230	60786329	16301179	0	+	0.494949	(0.49,0.53]	chr17	1322276	386	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000589916.5:ENST00000592848.5:ENST00000390652.9:ENST00000586241.1:ENST00000592393.5:ENST00000588462.5:ENST00000408905.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chr5	74990277	74990367	6642534	0	-	0.5	(0.49,0.53]	chr5	513196	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	CTD-2503O16.4:RPL27AP5	ENSG00000249856.1:ENSG00000182383.8	ENST00000505200.1:ENST00000469428.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chr8	37750394	37750486	9289996	0	+	0.51087	(0.49,0.53]	chr8	710357	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000519638.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chrX	30219155	30219250	18640663	0	+	0.494737	(0.49,0.53]	chrX	1590509	6	CDS	CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.12263	4.485035	4.84744	0.00591451	3.70203e-4	0.0427941	0.00515475
chrX	151961765	151961865	19267642	0	-	0.28	[0,0.29]	chrX	1636800	4	SS3_PROX	SS3_PROX:INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000476016.1:ENST00000474932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	3.77445	4.484954999999999	5.19546	2.37823e-5	4.78959e-9	6.17999e-4	4.09259e-7
chr11	70371326	70371424	12006584	0	+	0.367347	(0.36,0.39]	chr11	924761	1	EXON_MRNA	EXON_MRNA:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000638133.1:ENST00000530548.5:ENST00000525922.2:ENST00000531657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	3.33782	4.484624999999999	5.63143	3.59965e-5	3.24005e-6	8.71532e-4	1.07746e-4
chr19	48904400	48904454	17367659	0	+	0.574074	(0.53,0.59]	chr19	1442112	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	4.29638	4.484555	4.67273	6.55143e-7	2.26633e-7	3.09247e-5	1.12729e-5
chr12	24948726	24948826	13257060	0	-	0.46	(0.455,0.49]	chr12	1038919	4	SS5_PROX	SS5_PROX:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	4.32883	4.484305	4.63978	6.94032e-4	6.31002e-6	0.00876781	1.88287e-4
chr17	76557768	76557860	16359121	0	+	0.586957	(0.53,0.59]	chr17	1328567	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000591956.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000587743.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	14	302	2	2.78394	4.484125	6.18431	4.45716e-6	1e-12	1.54982e-4	2.25522e-10
chrX	53378415	53378514	19076606	0	-	0.272727	[0,0.29]	chrX	1622486	44	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.47088	4.484005	5.49713	0.0015572	5.03778e-6	0.0165415	1.5587e-4
chr12	22687317	22687415	12786276	0	+	0.377551	(0.36,0.39]	chr12	993067	25	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.46497	4.48396	5.50295	0.00105709	7.4907e-6	0.0123035	2.17853e-4
chr2	127732123	127732222	2868311	0	-	0.363636	(0.36,0.39]	chr2	256423	50	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.98025	4.48384	4.98743	0.00881716	8.82225e-5	0.0562439	0.00178337
chr6	27838339	27838375	7649624	0	-	0.361111	(0.36,0.39]	chr6	582818	1	UTR5	UTR5:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.98025	4.48384	4.98743	0.00881716	8.82225e-5	0.0562439	0.00178337
chr13	99552246	99552326	13865547	0	+	0.4125	(0.39,0.42]	chr13	1087213	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	3.52881	4.48367	5.43853	5.61812e-5	6.99795e-10	0.00124771	7.62242e-8
chr18	32097977	32098077	16810555	0	+	0.48	(0.455,0.49]	chr18	1386583	47	INTRON	INTRON	RP11-53I6.2:RNF138	ENSG00000263917.1:ENSG00000134758.14	ENST00000583184.1:ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000580519.1:ENST00000578107.5:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	36	2	3.49033	4.48316	5.47599	7.92678e-4	7.64978e-6	0.00933379	2.4151e-4
chr12	129089499	129089599	13608037	0	-	0.64	(0.59,1]	chr12	1072440	36	INTRON	INTRON	TMEM132D	ENSG00000151952.16	ENST00000422113.7	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	4.42422	4.483025	4.54183	0.0070583	1.17291e-5	0.0478044	3.12994e-4
chr16	24215805	24215904	15599245	0	+	0.363636	(0.36,0.39]	chr16	1236920	11	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.0322	4.483005	4.93381	0.00588589	1.90009e-4	0.0427941	0.00302753
chr21	29544445	29544545	18092075	0	+	0.38	(0.36,0.39]	chr21	1533761	442	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.0322	4.483005	4.93381	0.00588589	1.90009e-4	0.0427941	0.00302753
chr6	53267587	53267682	7740157	0	-	0.368421	(0.36,0.39]	chr6	594337	3	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.0322	4.483005	4.93381	0.00588589	1.90009e-4	0.0427941	0.00302753
chr8	22252410	22252509	9223603	0	+	0.373737	(0.36,0.39]	chr8	705500	20	UTR3	UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.0322	4.483005	4.93381	0.00588589	1.90009e-4	0.0427941	0.00302753
chr15	57953521	57953620	15305089	0	-	0.484848	(0.455,0.49]	chr15	1208082	2	UTR3	UTR3:EXON_MRNA	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	4.07638	4.482805000000001	4.88923	1.0208e-6	9.45747e-8	4.50492e-5	5.31584e-6
chr14	67690211	67690309	14683478	0	-	0.55102	(0.53,0.59]	chr14	1149644	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000553582.5:ENST00000554493.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	170	2	4.25209	4.48262	4.71315	6.76884e-9	3.96648e-9	6.05494e-7	3.4866e-7
chr17	7107584	7107668	16428333	0	-	0.464286	(0.455,0.49]	chr17	1339041	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.16	ENST00000254850.11:ENST00000355035.9:ENST00000446679.6:ENST00000576487.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.71798	4.482609999999999	5.24724	0.0202679	3.09759e-5	0.0984041	7.62166e-4
chr10	69379861	69379939	11096628	0	+	0.551282	(0.53,0.59]	chr10	843771	1	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	3.84214	4.482575	5.12301	1.2852e-4	6.5494e-6	0.00241206	1.94116e-4
chr6	10730850	10730942	7048623	0	+	0.326087	(0.29,0.33]	chr6	539767	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	4.0445	4.48249	4.92048	1.10996e-7	7.83331e-8	6.11678e-6	5.03126e-6
chr16	14853535	14853604	15560797	0	+	0.521739	(0.49,0.53]	chr16	1231925	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOMO1	ENSG00000103512.15	ENST00000287667.12:ENST00000620755.4:ENST00000610363.4:ENST00000566720.5:ENST00000566883.5:ENST00000566917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.8671	4.482435	6.09777	0.0100489	1.87775e-7	0.0623334	9.63683e-6
chr18	73182258	73182358	17175529	0	-	0.32	(0.29,0.33]	chr18	1409666	89	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	3.64709	4.48242	5.31775	3.76873e-4	1.06766e-5	0.00523508	3.17854e-4
chr11	60056663	60056740	11961563	0	+	0.532468	(0.53,0.59]	chr11	915649	2	UTR5	UTR5:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000528298.5:ENST00000278865.8:ENST00000525686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	74	2	3.12109	4.482205	5.84332	3.24817e-5	1.90853e-6	7.18962e-4	7.59317e-5
chrX	142202965	142203057	19261777	0	-	0.402174	(0.39,0.42]	chrX	1636101	1	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.35466	4.48212	5.60958	1.40185e-4	2.11003e-6	0.00236775	8.25026e-5
chr17	59205115	59205215	16292955	0	+	0.36	(0.33,0.36]	chr17	1321372	36	UTR3	UTR3:EXON_MRNA:INTRON	PRR11:CTD-2510F5.6	ENSG00000068489.13:ENSG00000265303.1	ENST00000262293.9:ENST00000577660.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.65992	4.48139	5.30286	3.45596e-4	1.23392e-5	0.00486237	3.58359e-4
chr10	71829077	71829177	11563350	0	-	0.48	(0.455,0.49]	chr10	880010	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	4.42349	4.4811250000000005	4.53876	3.27827e-6	1.31171e-6	1.08637e-4	5.53834e-5
chr2	170083335	170083434	2200442	0	+	0.242424	[0,0.29]	chr2	201385	16	UTR3	UTR3:EXON_MRNA	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000444475.5:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.36183	4.48071	4.59959	0.00170062	7.13769e-4	0.01759	0.0085671400000000009
chr1	52088143	52088242	192292	0	+	0.373737	(0.36,0.39]	chr1	24661	15	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr1	247159005	247159066	1603299	0	-	0.360656	(0.36,0.39]	chr1	159218	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr10	3157434	3157531	11346936	0	-	0.371134	(0.36,0.39]	chr10	864993	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr10	12122929	12123026	10926209	0	+	0.360825	(0.36,0.39]	chr10	831848	22	UTR3	UTR3:EXON_MRNA	DHTKD1	ENSG00000181192.12	ENST00000263035.9	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr15	50736643	50736740	15277084	0	-	0.360825	(0.36,0.39]	chr15	1205341	1	CDS	CDS:EXON_MRNA	SPPL2A	ENSG00000138600.10	ENST00000261854.10:ENST00000558934.1:ENST00000559527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr18	35978834	35978920	16824858	0	+	0.383721	(0.36,0.39]	chr18	1387523	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C18orf21	ENSG00000141428.17	ENST00000610527.4:ENST00000618334.1:ENST00000269194.10:ENST00000592875.6:ENST00000587873.5:ENST00000333234.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr3	177052321	177052416	4593776	0	-	0.368421	(0.36,0.39]	chr3	379707	2	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr5	119077605	119077704	6174686	0	+	0.363636	(0.36,0.39]	chr5	481566	56	INTRON	INTRON	DMXL1	ENSG00000172869.15	ENST00000509902.5:ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000510924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr8	120660926	120661026	10049287	0	-	0.37	(0.36,0.39]	chr8	756261	55	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5:ENST00000519298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.24194	4.4806	4.71926	0.00276729	5.29682e-4	0.0247437	0.006804
chr15	58610369	58610443	15310809	0	-	0.445946	(0.42,0.455]	chr15	1208287	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	3.62315	4.48058	5.33801	4.234e-4	2.01184e-9	0.00613535	1.94688e-7
chr15	88899733	88899811	15434284	0	-	0.602564	(0.59,1]	chr15	1220386	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	208	2	3.09997	4.480395	5.86082	2.20596e-4	6.9572e-10	0.00367555	7.5804e-8
chr11	64319800	64319868	11980498	0	+	0.558824	(0.53,0.59]	chr11	919237	2	CDS	CDS:EXON_MRNA:INTRON	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.1234	4.480355	5.8373100000000004	0.00390623	2.06883e-6	0.0322851	7.35008e-5
chr22	41074371	41074468	18518241	0	-	0.484536	(0.455,0.49]	chr22	1581022	3	EXON_PSEUDO	EXON_PSEUDO	ACTBP15	ENSG00000213857.3	ENST00000423293.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	3.81275	4.480245	5.14774	0.0138827	7.45457e-5	0.0760883	0.00142165
chr3	169709670	169709765	3876813	0	+	0.463158	(0.455,0.49]	chr3	328315	5	EXON_PSEUDO	EXON_PSEUDO	SDHDP3	ENSG00000244381.1	ENST00000484597.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	3.81275	4.480245	5.14774	0.0138827	7.45457e-5	0.0760883	0.00142165
chr1	156310949	156311031	1314042	0	-	0.597561	(0.59,1]	chr1	133411	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	118	2	4.37143	4.47998	4.58853	1.58503e-5	5.46127e-6	4.03494e-4	1.8199e-4
chr17	49711555	49711655	16583016	0	-	0.51	(0.49,0.53]	chr17	1362592	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	3.76099	4.47991	5.19883	2.00194e-4	6.30063e-5	0.0034021	0.00124286
chr6	44154072	44154130	7161038	0	+	0.5	(0.49,0.53]	chr6	553618	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	4.27961	4.479665	4.67972	6.94757e-4	9.03426e-6	0.00876781	2.53429e-4
chr12	56130857	56130925	12898261	0	+	0.470588	(0.455,0.49]	chr12	1004212	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4:ENST00000550986.1:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	84	2	3.66739	4.47961	5.29183	2.02214e-5	2.89856e-9	5.39633e-4	2.64796e-7
chr1	203710876	203710953	669575	0	+	0.467532	(0.455,0.49]	chr1	67450	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	4.36307	4.47953	4.59599	0.00218641	9.38471e-7	0.0208941	3.79261e-5
chr2	73244543	73244629	1885420	0	+	0.523256	(0.49,0.53]	chr2	178552	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCT7	ENSG00000135624.16	ENST00000469844.5:ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000409924.7:ENST00000473786.5:ENST00000488856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	4.37423	4.479375	4.58452	4.77238e-6	9.98532e-7	1.49327e-4	4.42534e-5
chr3	128060584	128060661	3725090	0	+	0.480519	(0.455,0.49]	chr3	318482	2	CDS	CDS:EXON_MRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding	5	133	2	4.15342	4.479225	4.80503	5.52725e-7	9.32253e-11	2.69113e-5	1.281e-8
chrX	119791576	119791630	19192827	0	-	0.611111	(0.59,1]	chrX	1631606	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	1028	2	3.98574	4.4790849999999995	4.97243	4.04878e-9	1.30707e-12	3.86509e-7	2.85722e-10
chr1	155054409	155054506	482558	0	+	0.659794	(0.59,1]	chr1	50355	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ADAM15	ENSG00000143537.14	ENST00000473905.6:ENST00000480331.5:ENST00000527418.5:ENST00000529473.5:ENST00000526491.5:ENST00000449910.6:ENST00000359280.8:ENST00000360674.8:ENST00000368412.7:ENST00000355956.6:ENST00000271836.10:ENST00000461564.6:ENST00000356955.7:ENST00000368413.5:ENST00000487956.6:ENST00000531455.5:ENST00000447332.3:ENST00000472434.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	3.98751	4.47883	4.97015	0.0301044	0.00140057	0.129773	0.0144327
chr17	41524205	41524268	16542255	0	-	0.603175	(0.59,1]	chr17	1355971	2	CDS	CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000468880.1:ENST00000593096.1:ENST00000471565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.98751	4.47883	4.97015	0.0301044	0.00140057	0.129773	0.0144327
chrX	46439982	46440073	19057491	0	-	0.593407	(0.59,1]	chrX	1619621	4	EXON_PSEUDO	EXON_PSEUDO	GAPDHP65	ENSG00000235587.2	ENST00000425487.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	30	2	3.98751	4.47883	4.97015	0.0301044	0.00140057	0.129773	0.0144327
chr10	27110700	27110798	11423276	0	-	0.306122	(0.29,0.33]	chr10	870884	7	UTR3	UTR3:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.94844	4.478725	6.00901	0.00217122	1.36977e-7	0.0208941	7.34618e-6
chr8	11849045	11849135	9699255	0	-	0.644444	(0.59,1]	chr8	734825	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	139	2	3.58133	4.478665	5.376	8.92036e-4	2.50789e-8	0.010856	1.71426e-6
chr17	82006240	82006340	16382062	0	+	0.64	(0.59,1]	chr17	1332220	20	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.01545	4.478375	4.9413	0.0251889	0.00191468	0.114168	0.0190905
chr20	45902266	45902334	17987672	0	-	0.720588	(0.59,1]	chr20	1524191	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.01545	4.478375	4.9413	0.0251889	0.00191468	0.114168	0.0190905
chr6	170658927	170659027	7556974	0	+	0.61	(0.59,1]	chr6	576995	185	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	30	2	4.01545	4.478375	4.9413	0.0251889	0.00191468	0.114168	0.0190905
chr5	10426455	10426522	5875460	0	+	0.432836	(0.42,0.455]	chr5	462048	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	166	2	4.37369	4.478315	4.58294	5.21183e-9	1.05142e-10	4.79353e-7	1.41904e-8
chr1	28013110	28013202	911677	0	-	0.554348	(0.53,0.59]	chr1	95361	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.99819	4.47822	4.95825	0.0111308	2.87508e-4	0.0665375	0.00457439
chr12	48696080	48696162	13321412	0	-	0.548781	(0.53,0.59]	chr12	1044946	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.99819	4.47822	4.95825	0.0111308	2.87508e-4	0.0665375	0.00457439
chr7	16462726	16462805	8702273	0	-	0.582278	(0.53,0.59]	chr7	664605	2	CDS	CDS:EXON_MRNA:INTRON	CRPPA:SOSTDC1	ENSG00000214960.11:ENSG00000171243.8	ENST00000675257.1:ENST00000674759.1:ENST00000307068.5:ENST00000396652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.99819	4.47822	4.95825	0.0111308	2.87508e-4	0.0665375	0.00457439
chr1	42843232	42843329	162253	0	+	0.56701	(0.53,0.59]	chr1	20422	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.00393	4.47813	4.95233	0.0108084	3.02711e-4	0.064368	0.00439897
chr1	225839216	225839281	738238	0	+	0.584615	(0.53,0.59]	chr1	74423	1	CDS	CDS:EXON_MRNA	EPHX1	ENSG00000143819.13	ENST00000272167.10:ENST00000614058.4:ENST00000366837.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.00393	4.47813	4.95233	0.0108084	3.02711e-4	0.064368	0.00439897
chr20	35626148	35626244	17954694	0	-	0.583333	(0.53,0.59]	chr20	1521049	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000498814.1:ENST00000473373.1:ENST00000462352.5:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.00393	4.47813	4.95233	0.0108084	3.02711e-4	0.064368	0.00439897
chrX	54810114	54810213	18705002	0	+	0.575758	(0.53,0.59]	chrX	1596147	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000463787.5:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1:ENST00000485483.1:ENST00000497484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.00393	4.47813	4.95233	0.0108084	3.02711e-4	0.064368	0.00439897
chr19	38817064	38817129	17560856	0	-	0.569231	(0.53,0.59]	chr19	1475035	1	CDS	CDS:UTR3:EXON_MRNA	ECH1	ENSG00000104823.9	ENST00000221418.9:ENST00000594391.5:ENST00000601778.5:ENST00000598707.5:ENST00000594164.5:ENST00000600178.5:ENST00000601060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	4.18373	4.477975	4.77222	6.67251e-4	1.85867e-5	0.00867533	4.56627e-4
chr6	33416919	33416969	7669552	0	-	0.4	(0.39,0.42]	chr6	587671	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	139	2	3.88511	4.477975	5.07084	4.76776e-6	5.30798e-12	1.64158e-4	9.92953e-10
chr6	42956596	42956680	7706412	0	-	0.559524	(0.53,0.59]	chr6	590978	4	EXON_PSEUDO	EXON_PSEUDO	RPL24P4	ENSG00000181524.6	ENST00000326586.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	44	2	4.18373	4.477975	4.77222	6.67251e-4	1.85867e-5	0.00867533	4.56627e-4
chr10	79349664	79349753	11148638	0	+	0.561798	(0.53,0.59]	chr10	847425	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPIF	ENSG00000108179.14	ENST00000225174.8:ENST00000472580.6:ENST00000498681.5:ENST00000492149.1:ENST00000448165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.69065	4.47778	5.26491	3.04331e-4	6.31437e-5	0.00472028	0.00124286
chr1	145994628	145994714	1270263	0	-	0.488372	(0.455,0.49]	chr1	125536	2	CDS	CDS:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1:ENST00000425134.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	263	2	3.96872	4.47776	4.9868	1.0417e-9	1e-12	1.08746e-7	2.46312e-10
chr6	69719018	69719081	7788195	0	-	0.428571	(0.42,0.455]	chr6	596354	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.52659	4.47764	5.42869	6.87022e-4	1.60756e-5	0.00876781	4.07445e-4
chr17	47949113	47949210	16252874	0	+	0.474227	(0.455,0.49]	chr17	1316987	25	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PNPO:RP11-6N17.9	ENSG00000108439.11:ENSG00000263798.2	ENST00000641323.1:ENST00000642017.2:ENST00000584806.2:ENST00000582262.1:ENST00000641877.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	35	2	3.89235	4.477585	5.06282	1.16789e-4	9.60445e-5	0.0020505	0.00190731
chrX	77899496	77899553	18744858	0	+	0.526316	(0.49,0.53]	chrX	1599618	2	UTR5	UTR5:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	2.23125	4.477365000000001	6.72348	7.11284e-4	7.03458e-10	0.00856	8.401e-8
chrX	66258839	66258909	18718227	0	+	0.485714	(0.455,0.49]	chrX	1597058	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.65079	4.47735	5.30391	3.61776e-4	3.12735e-5	0.00544764	6.97306e-4
chr7	119689758	119689858	9031944	0	-	0.26	[0,0.29]	chr7	689719	1893	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	38	2	2.42645	4.4772300000000005	6.52801	0.0123114	4.00352e-10	0.070688	5.15235e-8
chr3	23917859	23917959	3358541	0	+	0.53	(0.49,0.53]	chr3	294130	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000643707.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	278	2	3.51996	4.47719	5.43442	6.61123e-9	1e-12	5.93429e-7	2.25522e-10
chr2	54973820	54973867	2666114	0	-	0.404255	(0.39,0.42]	chr2	238475	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000491592.1:ENST00000485749.1:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	380	2	3.78798	4.477105	5.16623	4.31435e-8	1e-12	2.99386e-6	2.25522e-10
chr4	79317695	79317791	5483343	0	-	0.510417	(0.49,0.53]	chr4	439506	12	UTR3	UTR3:EXON_MRNA:INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1:ENST00000286794.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.69746	4.476735	6.25601	0.00380414	5.54522e-8	0.0317723	3.37102e-6
chr1	25300945	25301019	103749	0	+	0.513514	(0.49,0.53]	chr1	12144	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	84	2	4.06787	4.47668	4.88549	1.16062e-6	9.40767e-8	4.53337e-5	5.92227e-6
chr11	320731	320813	12225835	0	-	0.52439	(0.49,0.53]	chr11	943149	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4:ENST00000681748.1:ENST00000680622.1:ENST00000681184.1:ENST00000680720.1:ENST00000679792.1:ENST00000679441.1:ENST00000679433.1:ENST00000680023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	2	65	2	4.40667	4.476675	4.54668	3.62526e-6	1.40979e-6	1.29307e-4	5.33111e-5
chr8	47887546	47887625	9816669	0	-	0.531646	(0.53,0.59]	chr8	742745	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.06939	4.476595	5.8838	6.54756e-4	1.51824e-6	0.00860229	5.67784e-5
chr11	130141918	130141996	12207113	0	+	0.615385	(0.59,1]	chr11	942085	1	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000533860.5:ENST00000530493.1:ENST00000525604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	158	2	4.38649	4.476445	4.5664	6.21388e-6	5.2008e-7	2.03021e-4	2.29012e-5
chr1	7985144	7985234	30742	0	+	0.411111	(0.39,0.42]	chr1	3618	2	UTR3	UTR3:EXON_MRNA	PARK7	ENSG00000116288.13	ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.56097	4.476425	5.39188	6.12149e-4	1.75441e-5	0.00818575	4.38078e-4
chr22	20123479	20123573	18297492	0	+	0.606383	(0.59,1]	chr22	1553209	4	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	3.78676	4.47626	5.16576	6.55716e-4	3.60514e-4	0.0080931	0.00544284
chr6	32155106	32155183	7118441	0	+	0.61039	(0.59,1]	chr6	546917	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	3.78676	4.47626	5.16576	6.55716e-4	3.60514e-4	0.0080931	0.00544284
chr2	239915788	239915888	3244906	0	-	0.4	(0.39,0.42]	chr2	285963	24	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.49145	4.47615	5.46085	0.0350273	5.81708e-6	0.141505	1.921e-4
chr1	11974652	11974708	45504	0	+	0.660714	(0.59,1]	chr1	5811	1	CDS	CDS:EXON_MRNA:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	81	2	2.63214	4.476095	6.32005	0.005622	2.12246e-6	0.0421873	7.5146e-5
chr6	26198850	26198950	7647222	0	-	0.54	(0.53,0.59]	chr6	582552	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP1-34B20.21:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	202	2	4.40638	4.475955000000001	4.54553	6.51208e-9	2.47448e-10	5.85031e-7	3.03765e-8
chr1	230250508	230250560	749503	0	+	0.519231	(0.49,0.53]	chr1	76051	2	CDS	CDS:EXON_MRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.3044	4.4759	6.6474	0.00696379	2.1237e-9	0.0474632	2.03271e-7
chr12	7921114	7921213	13193174	0	-	0.525253	(0.49,0.53]	chr12	1033481	20	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.60476	4.47583	5.3469	4.52633e-4	2.75121e-5	0.00642319	6.30607e-4
chr13	113309642	113309715	13908272	0	+	0.506849	(0.49,0.53]	chr13	1090335	1	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.60476	4.47583	5.3469	4.52633e-4	2.75121e-5	0.00642319	6.30607e-4
chr11	74253510	74253609	12016978	0	+	0.585859	(0.53,0.59]	chr11	926524	1	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000538501.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.67993	4.4754000000000005	5.27087	3.22778e-4	5.9416e-5	0.0046122	0.00130151
chrX	153959981	153960071	19275706	0	-	0.577778	(0.53,0.59]	chrX	1637952	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4:ENST00000461098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	3.67993	4.4754000000000005	5.27087	3.22778e-4	5.9416e-5	0.0046122	0.00130151
chr8	99527876	99527927	9515218	0	+	0.372549	(0.36,0.39]	chr8	723320	2	EXON_SMALL	EXON_SMALL:INTRON	VPS13B:Y_RNA	ENSG00000132549.20:ENSG00000206699.1	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000682153.1:ENST00000682358.1:ENST00000521559.1:ENST00000383972.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay	4	94	2	3.20887	4.475355	5.74184	8.51229e-5	2.93491e-11	0.00174655	4.55488e-9
chr3	23889194	23889278	3358497	0	+	0.380952	(0.36,0.39]	chr3	294112	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1:ENST00000493707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	107	2	3.97546	4.47528	4.9751	2.39363e-7	3.35553e-10	1.32863e-5	3.98463e-8
chr8	30104390	30104486	9252504	0	+	0.447917	(0.42,0.455]	chr8	708852	1	CDS_START	CDS_START:CDS:EXON_MRNA	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5:ENST00000518192.5:ENST00000519466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	4.30177	4.47527	4.64877	7.69083e-6	5.54135e-7	2.20857e-4	2.69297e-5
chr16	87834502	87834591	16072474	0	-	0.595506	(0.59,1]	chr16	1291256	2	CDS	CDS:EXON_MRNA:PRIMIRNA	SLC7A5:MIR6775	ENSG00000103257.9:ENSG00000278598.1	ENST00000261622.5:ENST00000565644.5:ENST00000563489.1:ENST00000617557.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	74	2	2.42639	4.47524	6.52409	0.0409084	6.1879e-7	0.163285	2.65084e-5
chr1	27668225	27668300	910670	0	-	0.706667	(0.59,1]	chr1	95200	1	CDS	CDS:EXON_MRNA	IFI6	ENSG00000126709.16	ENST00000361157.11:ENST00000339145.8:ENST00000679644.1:ENST00000362020.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.66704	4.47494	5.28284	6.16458e-4	4.04404e-4	0.00822794	0.00550292
chr19	44988079	44988173	17350281	0	+	0.56383	(0.53,0.59]	chr19	1439377	1	CDS	CDS:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000588274.1:ENST00000589347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.75615	4.474515	5.19288	2.16536e-4	9.22873e-5	0.00361336	0.0016906
chr2	84777547	84777644	2769135	0	-	0.453608	(0.42,0.455]	chr2	245559	4	EXON_PSEUDO	EXON_PSEUDO	LDHAP7	ENSG00000235847.2	ENST00000398295.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	48	2	2.57051	4.474	6.37749	0.0265466	1.88677e-8	0.120071	1.34393e-6
chr19	41344805	41344864	17568631	0	-	0.559322	(0.53,0.59]	chr19	1476899	2	CDS	CDS:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1:ENST00000597453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	4.27526	4.473995	4.67273	1.03921e-5	6.55143e-7	2.85526e-4	3.09247e-5
chr1	108943936	108944036	1218004	0	-	0.37	(0.36,0.39]	chr1	118668	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6:ENST00000676391.1:ENST00000674527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	4.21361	4.473535	4.73346	3.2963e-4	1.31698e-5	0.00504024	3.45454e-4
chr17	1658316	1658381	16401349	0	-	0.507692	(0.49,0.53]	chr17	1334860	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	4.28332	4.473515	4.66371	0.00338762	5.91374e-7	0.0288632	2.55031e-5
chr8	15662155	15662225	9207757	0	+	0.5	(0.49,0.53]	chr8	703416	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1:ENST00000511783.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	4.28332	4.473515	4.66371	0.00338762	5.91374e-7	0.0288632	2.55031e-5
chr8	18067252	18067298	9732914	0	-	0.5	(0.49,0.53]	chr8	736314	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000637857.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000523744.2:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1:ENST00000637792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.21413	4.47239	6.73065	0.00995539	1.01558e-9	0.0621728	1.06338e-7
chr17	46031182	46031280	16565488	0	-	0.55102	(0.53,0.59]	chr17	1360684	14	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1:ENST00000574963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.30943	4.472085	5.63474	0.0018255	7.53339e-6	0.0183913	2.17987e-4
chrX	110171419	110171469	18820917	0	+	0.58	(0.53,0.59]	chrX	1603931	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.30943	4.472085	5.63474	0.0018255	7.53339e-6	0.0183913	2.17987e-4
chr1	19162515	19162611	876568	0	-	0.479167	(0.455,0.49]	chr1	90247	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.87233	4.472025	5.07172	1.08465e-4	8.3067e-5	0.00193256	0.00171126
chr10	7799057	7799125	10915968	0	+	0.455882	(0.455,0.49]	chr10	831325	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	3.87233	4.472025	5.07172	1.08465e-4	8.3067e-5	0.00193256	0.00171126
chrX	70846222	70846295	19105748	0	-	0.342466	(0.33,0.36]	chrX	1625162	3	EXON_SMALL	EXON_SMALL:INTRON	TEX11:ENSG10010137825.1:SNORD3E	ENSG00000120498.14:ENSG00000277492.1:ENSG00000280704.1	ENST00000374333.7:ENST00000395889.6:ENST00000344304.3:ENST00000362899.2:ENST00000627253.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding	8	105	2	3.61083	4.47157	5.33231	3.60977e-8	1.4877e-9	2.57156e-6	1.49577e-7
chr1	111161154	111161225	405975	0	+	0.408451	(0.39,0.42]	chr1	39881	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	4.16663	4.471495	4.77636	1.84729e-5	2.28159e-7	5.02409e-4	1.13101e-5
chr18	55509282	55509382	17131395	0	-	0.43	(0.42,0.455]	chr18	1406663	129	INTRON	INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000637239.2:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000543082.5:ENST00000540999.5:ENST00000537578.5:ENST00000568740.5:ENST00000674764.1:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000398339.5:ENST00000564403.6:ENST00000627136.2:ENST00000566514.5:ENST00000630319.2:ENST00000568169.5:ENST00000565580.3:ENST00000565908.6:ENST00000627685.2:ENST00000626595.2:ENST00000626425.2:ENST00000563824.5:ENST00000568147.5:ENST00000563888.6:ENST00000564343.5:ENST00000627784.2:ENST00000625716.2:ENST00000562543.5:ENST00000562847.5:ENST00000569357.4:ENST00000674598.1:ENST00000627320.2:ENST00000630224.2:ENST00000565124.4:ENST00000627568.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.39468	4.4713	4.54792	0.00240483	9.66045e-4	0.0217482	0.0115185
chr2	128107937	128108002	2059642	0	+	0.446154	(0.42,0.455]	chr2	193175	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000430075.5:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.39468	4.4713	4.54792	0.00240483	9.66045e-4	0.0217482	0.0115185
chr2	241727205	241727303	2470417	0	+	0.428571	(0.42,0.455]	chr2	223634	23	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ING5	ENSG00000168395.16	ENST00000313552.11:ENST00000474238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.39468	4.4713	4.54792	0.00240483	9.66045e-4	0.0217482	0.0115185
chr14	67651215	67651314	14361581	0	+	0.464646	(0.455,0.49]	chr14	1122684	4	UTR3	UTR3:EXON_MRNA	ARG2	ENSG00000081181.8	ENST00000261783.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	4.0204	4.471215000000001	4.92203	0.00736097	7.22227e-8	0.0490627	4.22134e-6
chr12	54408172	54408235	13343868	0	-	0.507937	(0.49,0.53]	chr12	1049828	2	CDS	CDS:UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.9516	4.4709699999999994	4.99034	1.6002e-4	6.96459e-5	0.00286408	0.0013446
chr9	129001662	129001729	10482795	0	+	0.567164	(0.53,0.59]	chr9	791150	3	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000487952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.81839	4.4707	5.12301	0.0184435	1.2852e-4	0.0945306	0.00241206
chr10	3163724	3163804	11347009	0	-	0.525	(0.49,0.53]	chr10	865020	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1:ENST00000488065.2:ENST00000678457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.38192	4.470605	4.55929	0.00259709	0.00116196	0.0229695	0.0130851
chr20	36779223	36779322	17958414	0	-	0.50505	(0.49,0.53]	chr20	1521662	15	UTR3	UTR3:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.38192	4.470605	4.55929	0.00259709	0.00116196	0.0229695	0.0130851
chr10	6221122	6221201	10911651	0	+	0.531646	(0.53,0.59]	chr10	830858	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFKFB3	ENSG00000170525.21	ENST00000379789.8:ENST00000536985.6:ENST00000379785.5:ENST00000490474.5:ENST00000477914.5:ENST00000467491.5:ENST00000461744.5:ENST00000317350.8:ENST00000626882.2:ENST00000625260.2:ENST00000360521.7:ENST00000640683.1:ENST00000379775.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.82407	4.47057	5.11707	0.0179666	1.35965e-4	0.0918323	0.00231202
chr3	52193420	52193503	3476600	0	+	0.53012	(0.53,0.59]	chr3	304030	4	EXON_PSEUDO	EXON_PSEUDO	ALDOAP1	ENSG00000242849.2	ENST00000491506.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	25	2	3.82407	4.47057	5.11707	0.0179666	1.35965e-4	0.0918323	0.00231202
chr16	21404322	21404422	15888074	0	-	0.52	(0.49,0.53]	chr16	1271077	2	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.4279	4.47051	4.51312	0.00196987	0.00156636	0.0193972	0.0156889
chr15	72355558	72355624	15369560	0	-	0.5	(0.49,0.53]	chr15	1214462	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	3.52514	4.47037	5.4156	4.98361e-5	1.84143e-5	0.0011306	4.53637e-4
chr14	22876688	22876753	14175071	0	+	0.630769	(0.59,1]	chr14	1110447	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000551466.1:ENST00000470660.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.11672	4.469984999999999	4.82325	0.0222273	0.002381	0.105595	0.0216895
chr8	123015546	123015585	10055911	0	-	0.615385	(0.59,1]	chr8	756439	1	CDS	CDS:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	29	2	4.11672	4.469984999999999	4.82325	0.0222273	0.002381	0.105595	0.0216895
chr9	137477833	137477933	10895329	0	-	0.71	(0.59,1]	chr9	828853	4	SS5_PROX	SS5_PROX:INTRON	PNPLA7	ENSG00000130653.16	ENST00000406427.6:ENST00000277531.8:ENST00000469998.1:ENST00000492278.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.11672	4.469984999999999	4.82325	0.0222273	0.002381	0.105595	0.0216895
chr1	154225081	154225123	479667	0	+	0.238095	[0,0.29]	chr1	49598	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.39638	4.46997	5.54356	1.22724e-4	2.29995e-6	0.00213239	8.86852e-5
chr16	70568353	70568424	15730138	0	+	0.43662	(0.42,0.455]	chr16	1253008	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.44537	4.469825	5.49428	8.6897e-5	1.07978e-5	0.00177086	2.9314e-4
chr1	150512424	150512498	468350	0	+	0.608108	(0.59,1]	chr1	47406	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	4.14483	4.469665	4.7945	0.0183207	0.0031766	0.0945306	0.0279054
chr16	67228975	67229013	15708881	0	+	0.631579	(0.59,1]	chr16	1249928	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM208	ENSG00000168701.19	ENST00000567193.5:ENST00000563168.1:ENST00000563953.5:ENST00000304800.14:ENST00000562235.5:ENST00000565201.1:ENST00000563426.5:ENST00000563271.5:ENST00000564649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	29	2	4.14483	4.469665	4.7945	0.0183207	0.0031766	0.0945306	0.0279054
chr6	170660927	170661027	7556994	0	+	0.61	(0.59,1]	chr6	576995	205	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	29	2	4.14483	4.469665	4.7945	0.0183207	0.0031766	0.0945306	0.0279054
chr1	108947610	108947664	1218045	0	-	0.296296	(0.29,0.33]	chr1	118680	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6:ENST00000676391.1:ENST00000674527.1:ENST00000676059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.24387	4.469585	4.6953	0.00263476	4.88271e-4	0.0239118	0.00638318
chr17	82395887	82395981	16712762	0	-	0.329787	(0.29,0.33]	chr17	1378620	10	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.24387	4.469585	4.6953	0.00263476	4.88271e-4	0.0239118	0.00638318
chr2	36847661	36847761	2594590	0	-	0.32	(0.29,0.33]	chr2	233508	101	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24387	4.469585	4.6953	0.00263476	4.88271e-4	0.0239118	0.00638318
chr2	96373646	96373744	1942637	0	+	0.326531	(0.29,0.33]	chr2	183908	4	UTR3	UTR3:EXON_MRNA	NCAPH	ENSG00000121152.10	ENST00000240423.9:ENST00000427946.5:ENST00000455200.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24387	4.469585	4.6953	0.00263476	4.88271e-4	0.0239118	0.00638318
chr5	31923532	31923631	5922582	0	+	0.444444	(0.42,0.455]	chr5	463993	1	INTRON	INTRON	PDZD2	ENSG00000133401.16	ENST00000438447.2:ENST00000502489.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.91373	4.46927	6.0248100000000004	0.00892357	2.97136e-7	0.0567495	1.42027e-5
chr1	21839821	21839919	890800	0	-	0.673469	(0.59,1]	chr1	92302	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	159	2	3.68764	4.46885	5.25006	4.42534e-5	6.08177e-8	0.00102453	3.65138e-6
chr12	46201147	46201198	13313569	0	-	0.392157	(0.39,0.42]	chr12	1043492	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.14886	4.46882	4.78878	0.00415881	4.27222e-4	0.0325842	0.00577513
chr14	73192643	73192716	14395033	0	+	0.410959	(0.39,0.42]	chr14	1124529	1	CDS	CDS:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.14886	4.46882	4.78878	0.00415881	4.27222e-4	0.0325842	0.00577513
chr15	99671388	99671454	15145274	0	+	0.409091	(0.39,0.42]	chr15	1190931	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MEF2A	ENSG00000068305.17	ENST00000354410.9:ENST00000338042.10:ENST00000558812.5:ENST00000557785.5:ENST00000558983.5:ENST00000449277.6:ENST00000557942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.14886	4.46882	4.78878	0.00415881	4.27222e-4	0.0325842	0.00577513
chr2	211776448	211776548	3149819	0	-	0.41	(0.39,0.42]	chr2	278203	254	INTRON	INTRON	ERBB4	ENSG00000178568.15	ENST00000342788.9:ENST00000402597.6:ENST00000436443.5:ENST00000484594.5:ENST00000260943.10:ENST00000484474.1:ENST00000435846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	4.14886	4.46882	4.78878	0.00415881	4.27222e-4	0.0325842	0.00577513
chr9	96603111	96603211	10752405	0	-	0.41	(0.39,0.42]	chr9	813994	360	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.14886	4.46882	4.78878	0.00415881	4.27222e-4	0.0325842	0.00577513
chrX	37870108	37870161	18658248	0	+	0.415094	(0.39,0.42]	chrX	1591452	1	EXON_SMALL	EXON_SMALL:INTRON	RP5-972B16.2:RNU6-49P	ENSG00000250349.3:ENSG00000206983.1	ENST00000465127.1:ENST00000384256.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	0	20	2	4.14886	4.46882	4.78878	0.00415881	4.27222e-4	0.0325842	0.00577513
chr19	41958285	41958370	17570745	0	-	0.517647	(0.49,0.53]	chr19	1477236	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RABAC1:CTD-2575K13.8	ENSG00000105404.11:ENSG00000285505.1	ENST00000601891.5:ENST00000600292.5:ENST00000222008.11:ENST00000601028.1:ENST00000601078.5:ENST00000644613.1:ENST00000596171.1:ENST00000601476.1:ENST00000599219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.33324	4.46863	5.60402	0.00162947	5.78803e-6	0.0169972	1.75119e-4
chr17	1650801	1650901	16401261	0	-	0.58	(0.53,0.59]	chr17	1334824	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	114	2	4.04414	4.4683399999999995	4.89254	1.4954e-7	1.22494e-7	7.9385e-6	7.48996e-6
chr17	49413176	49413264	16581238	0	-	0.5	(0.49,0.53]	chr17	1362384	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1:ENST00000513412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.69037	4.4680800000000005	5.24579	0.0226513	4.073e-5	0.10505	9.64741e-4
chr7	103500744	103500833	8963254	0	-	0.539326	(0.53,0.59]	chr7	686111	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	3.97791	4.46808	4.95825	2.87508e-4	2.51849e-6	0.00457439	8.73415e-5
chr11	126263426	126263523	12645138	0	-	0.618557	(0.59,1]	chr11	981826	6	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1	protein_coding	protein_coding	protein_coding	protein_coding	4	116	2	3.33448	4.468065	5.60165	1.30928e-4	1.82788e-5	0.00243846	4.52473e-4
chr5	168616535	168616627	6369406	0	+	0.521739	(0.49,0.53]	chr5	494770	3	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	121	2	3.80999	4.468005	5.12602	7.46851e-6	1.00955e-10	2.37258e-4	1.36994e-8
chr1	161671477	161671563	501543	0	+	0.546512	(0.53,0.59]	chr1	54360	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000674150.1:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	3.47419	4.467915	5.46164	8.75273e-4	2.11519e-5	0.0106963	5.06522e-4
chr20	45911151	45911251	17987770	0	-	0.55	(0.53,0.59]	chr20	1524237	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.47419	4.467915	5.46164	8.75273e-4	2.11519e-5	0.0106963	5.06522e-4
chr7	44115294	44115345	8796675	0	-	0.490196	(0.49,0.53]	chr7	670770	1	CDS	CDS:EXON_MRNA	POLD2	ENSG00000106628.12	ENST00000610533.6:ENST00000406581.6:ENST00000489883.1:ENST00000223361.7:ENST00000452185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.51981	4.4677050000000005	5.4156	6.88328e-4	1.84143e-5	0.00876781	4.53637e-4
chr9	99984966	99985017	10772555	0	-	0.529412	(0.49,0.53]	chr9	815425	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	3.35841	4.467585	5.57676	1.37225e-4	2.26041e-10	0.00253405	2.80446e-8
chr2	74461374	74461469	2742881	0	-	0.610526	(0.59,1]	chr2	244411	1	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.8606	4.4675650000000005	5.07453	0.00117617	2.2997e-4	0.0132131	0.00352524
chr3	184243927	184243996	4622936	0	-	0.666667	(0.59,1]	chr3	381725	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000463495.5:ENST00000462735.6:ENST00000423996.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.8606	4.4675650000000005	5.07453	0.00117617	2.2997e-4	0.0132131	0.00352524
chr12	48936992	48937089	13322609	0	-	0.546392	(0.53,0.59]	chr12	1045238	14	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	4.45334	4.467425	4.48151	3.13332e-6	2.61211e-6	1.15746e-4	8.99269e-5
chr2	226897298	226897398	2411593	0	+	0.48	(0.455,0.49]	chr2	216828	296	INTRON	INTRON	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.17407	4.467275000000001	4.76048	3.99985e-4	1.754e-5	0.00588767	4.38078e-4
chr1	230995909	230995984	751398	0	+	0.333333	(0.33,0.36]	chr1	76375	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	4.29439	4.467055	4.63972	9.429e-6	6.04873e-7	2.89287e-4	2.60562e-5
chr19	34354792	34354889	17300118	0	+	0.494845	(0.49,0.53]	chr19	1429798	20	UTR3	UTR3:EXON_MRNA	GARRE1	ENSG00000166398.14	ENST00000299505.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.73494	4.4668849999999996	5.19883	0.0189345	6.30063e-5	0.0934721	0.00124286
chr10	79353752	79353842	11148686	0	+	0.455556	(0.455,0.49]	chr10	847446	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PPIF	ENSG00000108179.14	ENST00000225174.8:ENST00000448165.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.3605	4.4668399999999995	5.57318	0.00147278	6.11867e-6	0.0157578	1.83393e-4
chr1	228464364	228464451	1539750	0	-	0.597701	(0.59,1]	chr1	154188	4	EXON_PSEUDO	EXON_PSEUDO	H2BU2P	ENSG00000181201.3	ENST00000436555.1	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	1	59	2	3.70806	4.466775	5.22549	5.14321e-4	5.13843e-4	0.00719062	0.00665221
chr4	169706966	169707066	5218057	0	+	0.42	(0.39,0.42]	chr4	420923	2	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.48908	4.46662	6.44416	0.0101318	8.46338e-9	0.0626311	6.69855e-7
chr12	22661062	22661133	12786004	0	+	0.43662	(0.42,0.455]	chr12	993030	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	4.25202	4.465915	4.67981	5.38444e-4	1.07036e-5	0.00744072	2.92107e-4
chr1	30733827	30733917	915560	0	-	0.633333	(0.59,1]	chr1	95862	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000464569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	207	2	4.19513	4.46587	4.73661	2.25552e-6	4.6e-8	8.7552e-5	2.86472e-6
chr5	43232881	43232978	6560129	0	-	0.484536	(0.455,0.49]	chr5	508331	12	EXON_PSEUDO	EXON_PSEUDO	TUBAP14	ENSG00000247763.2	ENST00000501221.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	41	2	4.42349	4.46577	4.50805	0.00122223	3.27827e-6	0.0135383	1.08637e-4
chr8	76645513	76645613	9901348	0	-	0.44	(0.42,0.455]	chr8	748189	287	INTRON	INTRON	ZFHX4-AS1	ENSG00000253661.2	ENST00000522961.1:ENST00000666902.1:ENST00000669823.1:ENST00000518143.2:ENST00000663655.1:ENST00000522357.2:ENST00000523977.2	lncRNA	lncRNA	lncRNA	lncRNA	7	241	2	3.00245	4.465505	5.92856	7.49627e-5	1e-12	0.00157538	2.25522e-10
chr15	89193234	89193319	15093418	0	+	0.411765	(0.39,0.42]	chr15	1187092	1	CDS	CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000568308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.94917	4.46521	5.98125	0.00121791	1.28715e-7	0.0130188	7.78377e-6
chr17	82850320	82850420	16386365	0	+	0.55	(0.53,0.59]	chr17	1332978	38	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.15805	4.465135	4.77222	0.00680952	6.67251e-4	0.0468196	0.00867533
chr3	184307952	184308016	3949095	0	+	0.546875	(0.53,0.59]	chr3	332355	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000473991.1:ENST00000491494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.15805	4.465135	4.77222	0.00680952	6.67251e-4	0.0468196	0.00867533
chr11	117195801	117195884	12154645	0	+	0.566265	(0.53,0.59]	chr11	936306	1	CDS	CDS:EXON_MRNA	SIDT2	ENSG00000149577.16	ENST00000324225.9:ENST00000620360.4:ENST00000278951.11:ENST00000431081.6:ENST00000628876.2:ENST00000525478.5:ENST00000532062.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.16383	4.46508	4.76633	0.00659193	6.98999e-4	0.0454205	0.00846751
chr12	7137954	7138010	12717248	0	+	0.571429	(0.53,0.59]	chr12	987679	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	23	2	4.16383	4.46508	4.76633	0.00659193	6.98999e-4	0.0454205	0.00846751
chr3	195787625	195787724	4661143	0	-	0.575758	(0.53,0.59]	chr3	385270	90	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.16383	4.46508	4.76633	0.00659193	6.98999e-4	0.0454205	0.00846751
chr7	90412954	90413043	8384974	0	+	0.573034	(0.53,0.59]	chr7	638936	3	CDS	CDS:EXON_MRNA:INTRON	CLDN12:CTB-13L3.1	ENSG00000157224.16:ENSG00000273299.1	ENST00000416322.5:ENST00000287916.8:ENST00000480135.1:ENST00000394604.5:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000427904.1:ENST00000451941.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	23	2	4.16383	4.46508	4.76633	0.00659193	6.98999e-4	0.0454205	0.00846751
chr9	136042545	136042644	10888099	0	-	0.444444	(0.42,0.455]	chr9	826903	232	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.25028	4.465045	4.67981	0.00406761	5.38444e-4	0.032143	0.00744072
chrX	150232224	150232320	19265103	0	-	0.4375	(0.42,0.455]	chrX	1636623	13	EXON_PSEUDO	EXON_PSEUDO	XRCC6P2	ENSG00000234825.3	ENST00000457831.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.25028	4.465045	4.67981	0.00406761	5.38444e-4	0.032143	0.00744072
chr12	55725560	55725626	13347067	0	-	0.484848	(0.455,0.49]	chr12	1050327	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000548117.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000555199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	187	2	4.12388	4.464964999999999	4.80605	1.63758e-9	2.12272e-10	1.75589e-7	2.64965e-8
chr8	85333524	85333620	9920356	0	-	0.46875	(0.455,0.49]	chr8	749274	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5:ENST00000524324.5:ENST00000517618.5:ENST00000519991.5:ENST00000523712.5:ENST00000520663.5:ENST00000517590.5:ENST00000518233.5:ENST00000517429.5:ENST00000521846.5:ENST00000522579.5:ENST00000518341.5:ENST00000522814.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	3.3841	4.46447	5.54484	1.17485e-4	4.89523e-6	0.00206023	1.67428e-4
chr1	44926627	44926683	972867	0	-	0.446429	(0.42,0.455]	chr1	102687	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7:ENST00000480675.5:ENST00000477953.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.40276	4.46435	4.52594	0.0017618	0.00144145	0.0180053	0.0147046
chr16	18533004	18533091	15876617	0	-	0.436782	(0.42,0.455]	chr16	1269183	1	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000569051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.40276	4.46435	4.52594	0.0017618	0.00144145	0.0180053	0.0147046
chr17	8474804	8474904	16432954	0	-	0.45	(0.42,0.455]	chr17	1340589	7	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.40276	4.46435	4.52594	0.0017618	0.00144145	0.0180053	0.0147046
chr8	128101163	128101256	9615837	0	+	0.44086	(0.42,0.455]	chr8	728754	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000653853.1:ENST00000523190.6:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000670535.1:ENST00000670009.1:ENST00000668351.1:ENST00000657682.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1:ENST00000667630.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	4.40276	4.46435	4.52594	0.0017618	0.00144145	0.0180053	0.0147046
chr9	128982624	128982701	10482578	0	+	0.454545	(0.42,0.455]	chr9	791062	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.40276	4.46435	4.52594	0.0017618	0.00144145	0.0180053	0.0147046
chrX	129812768	129812820	19219726	0	-	0.480769	(0.455,0.49]	chrX	1633214	2	CDS	CDS:EXON_MRNA	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.12843	4.46422	5.80001	0.00392855	1.35407e-6	0.0322851	5.16241e-5
chr7	73572906	73572970	8854595	0	-	0.515625	(0.49,0.53]	chr7	676041	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000495885.1:ENST00000437521.5:ENST00000435792.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.60653	4.46416	5.32179	4.50981e-4	2.63311e-5	0.00605268	6.73425e-4
chr12	54396292	54396376	13343714	0	-	0.547619	(0.53,0.59]	chr12	1049742	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000547197.1:ENST00000549601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	3.80527	4.46414	5.12301	1.2852e-4	9.95548e-7	0.00241206	3.97538e-5
chr11	33717420	33717471	12344293	0	-	0.490196	(0.49,0.53]	chr11	954021	2	CDS	CDS:EXON_MRNA	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.68246	4.464125	5.24579	3.06313e-4	4.073e-5	0.00442973	9.64741e-4
chrX	101398003	101398099	19151687	0	-	0.520833	(0.49,0.53]	chrX	1628673	2	CDS	CDS:UTR3:EXON_MRNA	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.68246	4.464125	5.24579	3.06313e-4	4.073e-5	0.00442973	9.64741e-4
chr1	27892162	27892247	910775	0	-	0.411765	(0.39,0.42]	chr1	95227	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000419958.5:ENST00000373909.7:ENST00000313433.11	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.93996	4.464105	4.98825	0.00841622	1.62756e-4	0.054565	0.00266622
chr13	95760130	95760221	13848419	0	+	0.406593	(0.39,0.42]	chr13	1086401	2	CDS	CDS:EXON_MRNA	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.93996	4.464105	4.98825	0.00841622	1.62756e-4	0.054565	0.00266622
chrX	123342410	123342510	18849040	0	+	0.41	(0.39,0.42]	chrX	1605969	158	INTRON	INTRON	GRIA3	ENSG00000125675.20	ENST00000620443.2:ENST00000622768.5:ENST00000620581.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.93996	4.464105	4.98825	0.00841622	1.62756e-4	0.054565	0.00266622
chr19	11447692	11447789	17231248	0	+	0.670103	(0.59,1]	chr19	1419925	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585325.5:ENST00000592445.1:ENST00000585540.1:ENST00000586486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	334	2	4.42001	4.463865	4.50772	3.59614e-8	1.05753e-8	2.56668e-6	8.1539200000000005e-07
chr19	5690220	5690316	17210627	0	+	0.697917	(0.59,1]	chr19	1415418	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPL36	ENSG00000130255.13	ENST00000579649.5:ENST00000582380.6:ENST00000577222.5:ENST00000347512.8:ENST00000582463.5:ENST00000579446.1:ENST00000590786.5:ENST00000394580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	599	2	3.8215	4.463745	5.10599	6.96775e-9	4.23721e-10	5.67344e-7	5.39328e-8
chr12	124810231	124810289	13600478	0	-	0.448276	(0.42,0.455]	chr12	1071717	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.71365	4.46361	5.21357	2.63375e-4	6.18673e-9	0.00427022	5.12571e-7
chr19	10923832	10923904	17460898	0	-	0.555556	(0.53,0.59]	chr19	1461244	1	CDS_START	CDS_START:CDS:EXON_MRNA	YIPF2	ENSG00000130733.11	ENST00000253031.6:ENST00000586748.6:ENST00000592646.5:ENST00000589971.1:ENST00000590329.5:ENST00000586575.5:ENST00000587943.5:ENST00000588347.5:ENST00000585858.1:ENST00000588962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	82	2	3.75615	4.463604999999999	5.17106	2.16536e-4	1.2921e-8	0.00361336	9.66948e-7
chr7	111299090	111299190	9004878	0	-	0.38	(0.36,0.39]	chr7	688402	3352	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	3.80586	4.4632000000000005	5.12054	7.15553e-5	9.62552e-6	0.00137393	2.93977e-4
chr3	9974383	9974435	4031287	0	-	0.384615	(0.36,0.39]	chr3	338400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1:ENST00000429759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	3.82613	4.462765	5.0994	1.39565e-4	4.68763e-5	0.0023599	0.00107286
chr15	40312351	40312444	15231031	0	-	0.580645	(0.53,0.59]	chr15	1198481	1	EXON_PSEUDO	EXON_PSEUDO	RP11-133K1.1	ENSG00000244705.1	ENST00000471253.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	48	2	2.7898	4.462445	6.13509	0.0128364	2.62487e-7	0.0719798	1.27527e-5
chr3	170084616	170084707	3878307	0	+	0.285714	[0,0.29]	chr3	328577	7	CDS	CDS:EXON_MRNA	GPR160	ENSG00000173890.17	ENST00000355897.10	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.28583	4.462149999999999	5.63847	0.00346525	1.9181e-6	0.0293796	6.93031e-5
chr4	73091146	73091242	5466122	0	-	0.541667	(0.53,0.59]	chr4	437754	6	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	3.72515	4.46199	5.19883	8.7034e-5	1.8264e-6	0.00177086	6.64372e-5
chr21	33915763	33915834	18224391	0	-	0.661972	(0.59,1]	chr21	1546678	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000652380.1:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	200	2	3.17191	4.461675	5.75144	1.5194e-4	1.59781e-9	0.00276208	1.59782e-7
chr8	102863806	102863902	9984796	0	-	0.458333	(0.455,0.49]	chr8	753514	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	53	2	3.02161	4.4614650000000005	5.90132	2.07727e-4	6.63378e-7	0.00351752	2.82038e-5
chrX	66189683	66189768	18717510	0	+	0.470588	(0.455,0.49]	chrX	1596971	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	4.22226	4.46142	4.70058	1.23185e-5	5.41116e-9	3.58356e-4	4.56666e-7
chr10	124403797	124403858	11729319	0	-	0.57377	(0.53,0.59]	chr10	895065	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000483711.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	4.1945	4.46136	4.72822	1.72205e-5	4.40858e-7	4.72777e-4	1.99026e-5
chr6	26196939	26197006	7647198	0	-	0.656716	(0.59,1]	chr6	582541	1	CDS	CDS:UTR3:EXON_MRNA	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	136	2	2.45201	4.46132	6.47063	4.67144e-4	1.37406e-6	0.00617739	5.74466e-5
chr1	203709300	203709380	669558	0	+	0.6	(0.59,1]	chr1	67444	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.44671	4.460940000000001	4.47517	0.00931497	0.00735659	0.0586162	0.0491503
chr19	41957068	41957119	17570730	0	-	0.627451	(0.59,1]	chr19	1477230	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RABAC1:CTD-2575K13.8	ENSG00000105404.11:ENSG00000285505.1	ENST00000601891.5:ENST00000600292.5:ENST00000598057.1:ENST00000222008.11:ENST00000601028.1:ENST00000595226.1:ENST00000601078.5:ENST00000644613.1:ENST00000596171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	28	2	4.44671	4.460940000000001	4.47517	0.00931497	0.00735659	0.0586162	0.0491503
chr17	47665107	47665158	16251788	0	+	0.45098	(0.42,0.455]	chr17	1316686	2	CDS	CDS:EXON_MRNA:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	2.47621	4.460805000000001	6.4454	0.00161397	1.07351e-8	0.0169243	8.24229e-7
chr14	20457408	20457508	14171287	0	+	0.52	(0.49,0.53]	chr14	1109117	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000557159.5:ENST00000557054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	3.10321	4.4606200000000005	5.81803	1.1948e-4	1.08721e-6	0.00208475	4.73591e-5
chr1	116397887	116397962	423885	0	+	0.52	(0.49,0.53]	chr1	41819	1	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	3.68499	4.4604099999999995	5.23583	2.9991e-4	3.3388e-11	0.00472028	5.10673e-9
chr12	54351468	54351562	12892169	0	+	0.521277	(0.49,0.53]	chr12	1003028	11	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000262061.7	protein_coding	protein_coding	protein_coding	protein_coding	5	125	2	3.00771	4.460125	5.91254	6.70462e-5	8.03435e-12	0.00142579	1.43305e-9
chr7	117223443	117223536	8480965	0	+	0.494624	(0.49,0.53]	chr7	647746	6	UTR3	UTR3:EXON_MRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.7546	4.460084999999999	5.16557	2.09468e-4	6.36135e-5	0.00327655	0.00136069
chr2	73491301	73491399	1886600	0	+	0.418367	(0.39,0.42]	chr2	178660	18	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682801.1:ENST00000682859.1:ENST00000682565.1:ENST00000684548.1:ENST00000683791.1:ENST00000684460.1:ENST00000684656.1:ENST00000423048.5:ENST00000684590.1:ENST00000620466.4:ENST00000651434.1:ENST00000652487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.28128	4.460055	4.63883	0.00342611	5.68159e-4	0.0283456	0.0077844
chr1	64833608	64833704	1073003	0	-	0.447917	(0.42,0.455]	chr1	109587	5	UTR3	UTR3:EXON_MRNA	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000672574.1:ENST00000673246.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr1	211576199	211576289	1478551	0	-	0.444444	(0.42,0.455]	chr1	149190	9	CDS	CDS:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr11	118376633	118376694	12157643	0	+	0.442623	(0.42,0.455]	chr11	936875	2	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr15	64529488	64529579	15341629	0	-	0.43956	(0.42,0.455]	chr15	1211081	10	EXON_PSEUDO	EXON_PSEUDO	GAPDHP61	ENSG00000248415.1	ENST00000507324.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr5	96793456	96793513	6721286	0	-	0.438596	(0.42,0.455]	chr5	517453	2	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr8	58581685	58581740	9351270	0	+	0.436364	(0.42,0.455]	chr8	715166	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1:ENST00000447267.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr8	73981245	73981337	9406605	0	+	0.434783	(0.42,0.455]	chr8	718134	2	CDS	CDS:UTR3:EXON_MRNA	TMEM70	ENSG00000175606.11	ENST00000312184.6:ENST00000416961.6:ENST00000517439.1:ENST00000519551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.05954	4.459960000000001	4.86038	0.00617886	3.34791e-4	0.0439741	0.00472923
chr11	78113885	78113937	12477856	0	-	0.442308	(0.42,0.455]	chr11	970738	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	4.16236	4.45982	4.75728	5.3817e-4	1.83138e-5	0.00686676	4.99708e-4
chr5	32149174	32149274	6517747	0	-	0.45	(0.42,0.455]	chr5	504824	49	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	4.16236	4.45982	4.75728	5.3817e-4	1.83138e-5	0.00686676	4.99708e-4
chr12	110429359	110429459	13537377	0	-	0.61	(0.59,1]	chr12	1064862	258	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	1	66	2	4.28843	4.459745	4.63106	0.00537945	2.52144e-5	0.0406564	5.85193e-4
chr1	158525050	158525148	492364	0	+	0.397959	(0.39,0.42]	chr1	52527	15	EXON_PSEUDO	EXON_PSEUDO	HSP90AA3P	ENSG00000231434.1	ENST00000436135.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.42584	4.4595400000000005	4.49324	0.00199429	0.00108192	0.0189001	0.0124943
chr11	47840414	47840501	12389996	0	-	0.413793	(0.39,0.42]	chr11	957568	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1:ENST00000529863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.42584	4.4595400000000005	4.49324	0.00199429	0.00108192	0.0189001	0.0124943
chr11	60061260	60061316	11961612	0	+	0.410714	(0.39,0.42]	chr11	915657	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000528298.5:ENST00000278865.8:ENST00000525686.1:ENST00000526199.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.42584	4.4595400000000005	4.49324	0.00199429	0.00108192	0.0189001	0.0124943
chr2	36849455	36849555	2594608	0	-	0.41	(0.39,0.42]	chr2	233509	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.42584	4.4595400000000005	4.49324	0.00199429	0.00108192	0.0189001	0.0124943
chr6	43019091	43019165	7154594	0	+	0.405405	(0.39,0.42]	chr6	552414	1	CDS	CDS:EXON_MRNA	KLHDC3	ENSG00000124702.18	ENST00000244670.12:ENST00000326974.9:ENST00000332245.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.02687	4.459524999999999	4.89218	1.6518e-4	4.35816e-5	0.0029267300000000002	0.00091744700000000005
chr1	233289253	233289350	1556700	0	-	0.463918	(0.455,0.49]	chr1	155668	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCNX2:RPS7P3	ENSG00000135749.19:ENSG00000231940.1	ENST00000258229.14:ENST00000443360.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	20	2	4.41041	4.45923	4.50805	0.00218771	0.00122223	0.0202707	0.0135383
chr19	16553678	16553778	17491594	0	-	0.49	(0.455,0.49]	chr19	1466499	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.41041	4.45923	4.50805	0.00218771	0.00122223	0.0202707	0.0135383
chr2	171727893	171727967	2207868	0	+	0.459459	(0.455,0.49]	chr2	202079	2	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.41041	4.45923	4.50805	0.00218771	0.00122223	0.0202707	0.0135383
chr8	94511429	94511529	9960214	0	-	0.47	(0.455,0.49]	chr8	751283	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.41041	4.45923	4.50805	0.00218771	0.00122223	0.0202707	0.0135383
chrY	13286637	13286729	19315270	0	+	0.48913	(0.455,0.49]	chrY	1641774	1	EXON_PSEUDO	EXON_PSEUDO	PSMA6P1	ENSG00000215414.4	ENST00000400275.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.41041	4.45923	4.50805	0.00218771	0.00122223	0.0202707	0.0135383
chr2	47280784	47280884	2632517	0	-	0.38	(0.36,0.39]	chr2	236988	591	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000658129.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.78659	4.459225	6.13186	0.0132982	2.76105e-8	0.0740932	2.02995e-6
chr7	100097890	100097948	8949675	0	-	0.465517	(0.455,0.49]	chr7	683537	2	CDS	CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	3.67042	4.45883	5.24724	3.09759e-5	2.46218e-6	7.62166e-4	8.56868e-5
chr1	201007379	201007477	1445391	0	-	0.5	(0.49,0.53]	chr1	144921	13	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.23759	4.458655	4.67972	0.00436474	6.94757e-4	0.0335517	0.00876781
chr19	1171134	1171234	17418193	0	-	0.5	(0.49,0.53]	chr19	1452279	21	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.23759	4.458655	4.67972	0.00436474	6.94757e-4	0.0335517	0.00876781
chr4	65573748	65573844	4864488	0	+	0.5	(0.49,0.53]	chr4	400319	4	EXON_PSEUDO	EXON_PSEUDO	RP11-408P14.1	ENSG00000243199.1	ENST00000466377.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.23759	4.458655	4.67972	0.00436474	6.94757e-4	0.0335517	0.00876781
chr3	184172923	184173022	3948133	0	+	0.393939	(0.39,0.42]	chr3	331990	23	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.32811	4.45857	5.58903	0.00182819	5.14263e-6	0.0183913	1.58468e-4
chr5	10397292	10397344	5875146	0	+	0.346154	(0.33,0.36]	chr5	461961	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	4.23145	4.458525	4.6856	3.92435e-4	1.158e-5	0.00583618	3.09867e-4
chr1	227767718	227767806	742796	0	+	0.5	(0.49,0.53]	chr1	74973	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.28332	4.458349999999999	4.63338	0.00338762	9.56909e-4	0.0288632	0.010724
chr19	46383779	46383878	17357337	0	+	0.494949	(0.49,0.53]	chr19	1440603	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000487483.6:ENST00000532058.1:ENST00000486994.5:ENST00000467502.6:ENST00000493347.5:ENST00000595055.1:ENST00000491003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.28332	4.458349999999999	4.63338	0.00338762	9.56909e-4	0.0288632	0.010724
chr5	138420705	138420790	6244495	0	+	0.529412	(0.49,0.53]	chr5	486556	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000508386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.28332	4.458349999999999	4.63338	0.00338762	9.56909e-4	0.0288632	0.010724
chr6	126340273	126340373	7388580	0	+	0.53	(0.49,0.53]	chr6	566381	1	CDS_START	CDS_START:CDS:EXON_MRNA	CENPW	ENSG00000203760.9	ENST00000368328.5:ENST00000368326.5:ENST00000368325.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.28332	4.458349999999999	4.63338	0.00338762	9.56909e-4	0.0288632	0.010724
chr7	101208904	101208957	8953652	0	-	0.528302	(0.49,0.53]	chr7	684664	2	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000487563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.28332	4.458349999999999	4.63338	0.00338762	9.56909e-4	0.0288632	0.010724
chrX	47202430	47202504	18686778	0	+	0.648649	(0.59,1]	chrX	1593211	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	4.20036	4.45773	4.7151	0.00412279	4.07557e-5	0.0325842	8.75066e-4
chr1	54200434	54200511	200304	0	+	0.675325	(0.59,1]	chr1	25572	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	28	2	4.34487	4.45762	4.57037	0.0123678	0.0054994	0.0705839	0.0402071
chr11	72006110	72006186	12447060	0	-	0.605263	(0.59,1]	chr11	967242	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000541584.5:ENST00000540626.5:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000541262.5:ENST00000545721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.34487	4.45762	4.57037	0.0123678	0.0054994	0.0705839	0.0402071
chr6	32128116	32128207	7664542	0	-	0.604396	(0.59,1]	chr6	586044	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000468502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.34487	4.45762	4.57037	0.0123678	0.0054994	0.0705839	0.0402071
chrX	47211130	47211225	18686882	0	+	0.578947	(0.53,0.59]	chrX	1593255	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.47	4.45759	6.44518	0.0089333	2.49042e-8	0.0567495	1.70299e-6
chr1	19326530	19326623	85651	0	+	0.602151	(0.59,1]	chr1	9685	1	CDS	CDS:UTR3:EXON_MRNA	SLC66A1	ENSG00000040487.13	ENST00000375155.7:ENST00000375153.8:ENST00000469076.5:ENST00000400548.6:ENST00000497827.1:ENST00000432465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.37323	4.45753	4.54183	0.00990413	0.0070583	0.061536	0.0478044
chr17	44352952	44353029	16234944	0	+	0.597403	(0.59,1]	chr17	1314590	3	UTR3	UTR3:EXON_MRNA	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.37323	4.45753	4.54183	0.00990413	0.0070583	0.061536	0.0478044
chr19	50725300	50725383	17376988	0	+	0.759036	(0.59,1]	chr19	1444806	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLEC11A	ENSG00000105472.13	ENST00000250340.9:ENST00000617718.4:ENST00000599973.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.37323	4.45753	4.54183	0.00990413	0.0070583	0.061536	0.0478044
chr1	198718093	198718162	648092	0	+	0.463768	(0.455,0.49]	chr1	65128	1	CDS	CDS:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000367367.8:ENST00000529828.5:ENST00000491302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	46	2	4.20189	4.45747	4.71305	0.00397662	3.85068e-7	0.0322851	1.76303e-5
chr22	39020155	39020253	18368465	0	+	0.459184	(0.455,0.49]	chr22	1562849	19	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	3.73528	4.45692	5.17856	1.49591e-6	6.33888e-9	5.62205e-5	5.71684e-7
chr16	81711074	81711173	15772100	0	+	0.434343	(0.42,0.455]	chr16	1255597	14	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.95538	4.45684	4.9583	6.68846e-5	5.55326e-8	0.00142352	3.37237e-6
chr5	127524822	127524920	6204750	0	+	0.479592	(0.455,0.49]	chr5	483421	4	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.93794	4.456595	4.97525	1.38474e-4	7.43966e-5	0.00254294	0.00142165
chr3	196067587	196067657	4663335	0	-	0.514286	(0.49,0.53]	chr3	385609	2	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	36	801	2	4.36108	4.45651	4.55194	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	30490239	30490331	7111199	0	+	0.663043	(0.59,1]	chr6	544746	1	CDS	CDS:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5:ENST00000484194.1:ENST00000493699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.97118	4.45624	4.9413	0.00191468	1.3379e-4	0.0190905	0.00229039
chr12	57694848	57694926	12904067	0	+	0.551282	(0.53,0.59]	chr12	1005853	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000549897.1:ENST00000315970.12:ENST00000550848.5:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000551285.5:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000550793.1:ENST00000552423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	134	2	4.1945	4.45615	4.7178	1.72205e-5	3.73707e-10	4.72777e-4	4.38693e-8
chr1	161510899	161510956	500454	0	+	0.491228	(0.49,0.53]	chr1	54228	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	107	2	4.42663	4.4561	4.48557	6.48162e-8	3.59269e-8	3.85234e-6	2.56668e-6
chr8	101369266	101369360	9520942	0	+	0.414894	(0.39,0.42]	chr8	723783	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	NACA4P	ENSG00000228224.3	ENST00000419462.1:ENST00000519039.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	18	412	2	3.77713	4.455995	5.13486	1.02642e-9	1e-12	1.17026e-7	2.25522e-10
chr13	29517572	29517644	13945254	0	-	0.430556	(0.42,0.455]	chr13	1094566	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.95538	4.45599	4.9566	2.10615e-4	6.68846e-5	0.00327655	0.00142352
chrX	135033454	135033546	18865060	0	+	0.347826	(0.33,0.36]	chrX	1607588	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.82538	4.455965	5.08655	1.40963e-4	4.6453e-5	0.002378	0.00106753
chr19	11438066	11438124	17231142	0	+	0.534483	(0.53,0.59]	chr19	1419886	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000589126.5:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	148	2	4.45334	4.455905	4.45847	3.13332e-6	5.72846e-10	1.15746e-4	6.38109e-8
chr6	50912892	50912983	7731631	0	-	0.428571	(0.42,0.455]	chr6	593253	3	EXON_PSEUDO	EXON_PSEUDO	FTH1P5	ENSG00000230204.1	ENST00000425761.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	100	2	4.35711	4.455534999999999	4.55396	1.1523e-6	7.68305e-9	4.9483e-5	6.19048e-7
chr11	836768	836843	11759144	0	+	0.52	(0.49,0.53]	chr11	898588	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000642413.1:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000529810.5:ENST00000526693.5:ENST00000532045.6:ENST00000527341.5:ENST00000526661.5:ENST00000530726.5:ENST00000528011.2:ENST00000530320.5:ENST00000532075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	3.97501	4.4555299999999995	4.93605	2.122e-7	6.89689e-8	1.19792e-5	4.06041e-6
chr2	26280054	26280115	1686321	0	+	0.442623	(0.42,0.455]	chr2	164854	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.62315	4.4554849999999995	5.28782	4.234e-4	3.65299e-5	0.00613535	7.95843e-4
chrX	130065040	130065139	19220950	0	-	0.50505	(0.49,0.53]	chrX	1633279	12	UTR3	UTR3:EXON_MRNA	ELF4	ENSG00000102034.17	ENST00000308167.10:ENST00000335997.11:ENST00000615377.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.42954	4.45536	5.48118	0.00105489	1.24248e-5	0.0123035	3.28918e-4
chr2	241352637	241352736	2467899	0	+	0.393939	(0.39,0.42]	chr2	223257	8	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.76711	4.455155	6.1432	3.61954e-4	9.87413e-8	0.00544764	5.5198e-6
chrX	66207194	66207264	18717700	0	+	0.442857	(0.42,0.455]	chrX	1597028	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	84	2	3.6221	4.454965	5.28783	2.17539e-5	2.12093e-7	5.73422e-4	1.0685300000000001e-05
chr1	77206639	77206731	1110368	0	-	0.402174	(0.39,0.42]	chr1	111573	1	CDS	CDS:EXON_MRNA:INTRON	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000359130.1:ENST00000478391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.44923	4.454935	5.46064	0.00105208	1.15573e-5	0.0123035	3.09736e-4
chr2	162288952	162289050	2972221	0	-	0.387755	(0.36,0.39]	chr2	263839	2	INTRON	INTRON	IFIH1	ENSG00000115267.9	ENST00000649979.2:ENST00000679938.1:ENST00000649554.1:ENST00000648433.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.32237	4.4549199999999995	4.58747	0.00273222	6.55819e-4	0.0237575	0.00860229
chr11	44108073	44108160	11926203	0	+	0.505747	(0.49,0.53]	chr11	911522	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000529186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	4.22986	4.45479	4.67972	6.94757e-4	1.25249e-5	0.00876781	3.30689e-4
chr11	88886243	88886343	12537585	0	-	0.47	(0.455,0.49]	chr11	972649	357	INTRON	INTRON	GRM5	ENSG00000168959.15	ENST00000455756.6:ENST00000305447.5:ENST00000305432.9	protein_coding	protein_coding	protein_coding	protein_coding	146	3425	2	3.60159	4.454585	5.30758	1.59672e-12	1e-12	3.72224e-10	2.25522e-10
chr3	31623767	31623861	3392367	0	+	0.468085	(0.455,0.49]	chr3	295068	2	CDS	CDS:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	4.0992	4.45457	4.80994	2.73975e-5	1.95422e-9	6.95757e-4	1.89915e-7
chr2	74754570	74754669	2744816	0	-	0.50505	(0.49,0.53]	chr2	244804	20	INTRON	INTRON	RP11-372J12.1	ENSG00000287687.2	ENST00000674157.1:ENST00000660620.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	4.28332	4.45453	4.62574	0.00338762	7.86745e-7	0.0288632	3.25904e-5
chr19	47197309	47197377	17360761	0	+	0.470588	(0.455,0.49]	chr19	1440980	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	3.46389	4.454355	5.44482	9.14164e-4	1.36044e-5	0.0110519	3.54469e-4
chr3	76435527	76435627	3565403	0	+	0.48	(0.455,0.49]	chr3	309339	2	INTRON	INTRON	ROBO2	ENSG00000185008.17	ENST00000487694.7:ENST00000602589.5:ENST00000475034.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.46389	4.454355	5.44482	9.14164e-4	1.36044e-5	0.0110519	3.54469e-4
chr2	170966430	170966530	2206512	0	+	0.46	(0.455,0.49]	chr2	201863	4	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	109	2	4.28007	4.4542649999999995	4.62846	8.3464e-6	5.50041e-10	2.58924e-4	6.17835e-8
chr13	113310787	113310867	13908286	0	+	0.575	(0.53,0.59]	chr13	1090341	2	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	3.56863	4.454055	5.33948	4.08763e-5	3.93456e-5	9.64741e-4	8.48445e-4
chr6	44233428	44233528	7161524	0	+	0.58	(0.53,0.59]	chr6	553815	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	169	2	3.71259	4.453815	5.19504	4.12107e-7	8.01305e-11	2.09487e-5	1.11869e-8
chr1	26780656	26780756	111019	0	+	0.43	(0.42,0.455]	chr1	13355	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.70451	4.453595	5.20268	2.72131e-4	3.59669e-5	0.00404713	8.71318e-4
chr5	134674614	134674694	6230324	0	+	0.425	(0.42,0.455]	chr5	485176	1	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.70451	4.453595	5.20268	2.72131e-4	3.59669e-5	0.00404713	8.71318e-4
chr12	54241155	54241255	13342938	0	-	0.53	(0.49,0.53]	chr12	1049602	98	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	9	186	2	3.69403	4.45294	5.21185	1.65623e-8	3.44204e-11	1.19831e-6	5.82144e-9
chr12	104488628	104488728	13059493	0	+	0.46	(0.455,0.49]	chr12	1017729	307	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.26593	4.452855	4.63978	0.00372962	6.94032e-4	0.0302984	0.00876781
chr22	31712278	31712376	18474443	0	-	0.489796	(0.455,0.49]	chr22	1576846	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRR14L	ENSG00000183530.14	ENST00000330495.8:ENST00000327423.11:ENST00000431684.1:ENST00000492705.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.26593	4.452855	4.63978	0.00372962	6.94032e-4	0.0302984	0.00876781
chr3	191450774	191450874	3979324	0	+	0.47	(0.455,0.49]	chr3	334805	248	INTRON	INTRON	RP11-197K6.1	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	4.26593	4.452855	4.63978	0.00372962	6.94032e-4	0.0302984	0.00876781
chr18	46087340	46087416	17103831	0	-	0.407895	(0.39,0.42]	chr18	1404362	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.62877	4.45265	6.27653	3.044e-4	1.06521e-8	0.00442277	9.02974e-7
chr1	247311454	247311554	1604144	0	-	0.42	(0.39,0.42]	chr1	159299	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.22662	4.45259	5.67856	0.00257296	1.29189e-6	0.0229363	5.48279e-5
chr15	72199649	72199749	15367990	0	-	0.59	(0.53,0.59]	chr15	1214122	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000565143.1:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	291	2	4.29979	4.4525749999999995	4.60536	1.32948e-10	6.47499e-11	1.9378399999999998e-08	9.24307e-9
chr11	44234178	44234243	11927486	0	+	0.461538	(0.455,0.49]	chr11	911611	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1:ENST00000684437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr16	58114864	58114920	15965451	0	-	0.464286	(0.455,0.49]	chr16	1280912	2	CDS	CDS:EXON_MRNA	CFAP20	ENSG00000070761.8	ENST00000262498.8:ENST00000562622.5:ENST00000564150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr2	70259478	70259566	1878591	0	+	0.465909	(0.455,0.49]	chr2	177431	1	CDS_START	CDS_START:CDS:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000422380.5:ENST00000414812.5:ENST00000433351.7:ENST00000264441.9:ENST00000451279.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr2	231146239	231146297	2423942	0	+	0.465517	(0.455,0.49]	chr2	218368	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000677229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr3	178493422	178493519	4599447	0	-	0.484536	(0.455,0.49]	chr3	379968	2	EXON_PSEUDO	EXON_PSEUDO	PPIAP75	ENSG00000271131.1	ENST00000603675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr4	73058213	73058287	5465810	0	-	0.472973	(0.455,0.49]	chr4	437684	1	CDS	CDS:UTR3:EXON_MRNA	COX18	ENSG00000163626.17	ENST00000295890.8:ENST00000507544.3:ENST00000449739.6:ENST00000510031.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr7	148800670	148800758	8611118	0	+	0.488636	(0.455,0.49]	chr7	656756	2	UTR3	UTR3:EXON_MRNA	CUL1	ENSG00000055130.17	ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000617797.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr9	122392188	122392273	10452770	0	+	0.470588	(0.455,0.49]	chr9	787092	1	CDS	CDS:UTR3:EXON_MRNA	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr9	129827676	129827772	10867777	0	-	0.489583	(0.455,0.49]	chr9	824293	5	UTR3	UTR3:EXON_MRNA	C9orf78	ENSG00000136819.15	ENST00000372447.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.36307	4.452405	4.54174	0.00218641	0.00130137	0.0208941	0.0136936
chr3	196055227	196055301	4663196	0	-	0.418919	(0.39,0.42]	chr3	385564	3	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5:ENST00000483983.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	461	2	4.33573	4.452145	4.56856	1e-12	1e-12	2.46312e-10	2.25522e-10
chr9	73165115	73165209	10304737	0	+	0.478723	(0.455,0.49]	chr9	776046	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	102	2	4.22656	4.45212	4.67768	3.04208e-7	6.67496e-9	1.62675e-5	5.4538e-7
chr3	41235783	41235843	3432582	0	+	0.416667	(0.39,0.42]	chr3	298558	2	CDS	CDS:EXON_MRNA:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1:ENST00000465552.2:ENST00000482042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	3.56097	4.452030000000001	5.34309	6.12149e-4	1.71563e-9	0.00818575	1.69212e-7
chr19	12668262	12668358	17469920	0	-	0.541667	(0.53,0.59]	chr19	1462817	3	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	3.94515	4.4517	4.95825	2.87508e-4	3.18429e-6	0.00457439	1.06148e-4
chr6	65005491	65005591	7776956	0	-	0.47	(0.455,0.49]	chr6	596107	74	INTRON	INTRON	EYS	ENSG00000188107.15	ENST00000503581.6:ENST00000370621.7	protein_coding	protein_coding	protein_coding	protein_coding	9	227	2	3.63256	4.4516849999999994	5.27081	1.7611e-7	1e-12	1.02865e-5	2.25522e-10
chrX	153796492	153796552	18916191	0	+	0.5	(0.49,0.53]	chrX	1611448	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471724.5:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	3.63571	4.451475	5.26724	3.18193e-6	4.01008e-9	1.16805e-4	3.51297e-7
chr1	42842604	42842692	162246	0	+	0.534091	(0.53,0.59]	chr1	20420	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	4.24099	4.45146	4.66193	1.28258e-5	7.20737e-7	3.70041e-4	3.019e-5
chr13	71675307	71675388	13778208	0	+	0.54321	(0.53,0.59]	chr13	1084198	4	EXON_PSEUDO	EXON_PSEUDO	H3P36	ENSG00000236534.1	ENST00000440551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	73	2	4.24099	4.45146	4.66193	1.28258e-5	7.20737e-7	3.70041e-4	3.019e-5
chr17	15465362	15465461	16456270	0	-	0.474747	(0.455,0.49]	chr17	1343279	119	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	3.57525	4.45142	5.32759	5.24878e-4	1.92345e-5	0.00677371	5.18397e-4
chr1	113968441	113968510	418154	0	+	0.550725	(0.53,0.59]	chr1	41178	1	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	4.03453	4.45138	4.86823	4.35895e-4	4.6e-5	0.00623608	9.56296e-4
chr12	7920022	7920122	13193163	0	-	0.48	(0.455,0.49]	chr12	1033481	9	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.65545	4.451345	5.24724	3.50134e-4	3.09759e-5	0.0049086	7.62166e-4
chr9	34086974	34087073	10634750	0	-	0.40404	(0.39,0.42]	chr9	803967	7	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.89848	4.451195	5.00391	9.30194e-5	9.12714e-5	0.00182992	0.00169783
chr7	73572843	73572906	8854594	0	-	0.52381	(0.49,0.53]	chr7	676041	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000495885.1:ENST00000437521.5:ENST00000435792.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	3.35841	4.451155	5.5439	1.37225e-4	8.44877e-6	0.00253405	2.39255e-4
chr7	139418523	139418621	8566268	0	+	0.285714	[0,0.29]	chr7	653678	4	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	3.48114	4.45102	5.4209	1.59721e-4	8.29716e-6	0.00286408	2.36305e-4
chr2	159768345	159768444	2163241	0	+	0.373737	(0.36,0.39]	chr2	199224	11	UTR3	UTR3:EXON_MRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	3.06064	4.45086	5.84108	1.7786e-5	3.0375e-7	4.43546e-4	1.62555e-5
chr7	77793971	77794071	8867591	0	-	0.41	(0.39,0.42]	chr7	678034	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM60	ENSG00000135211.6	ENST00000257663.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.52139	4.450855	5.38032	5.10101e-5	9.82886e-6	0.00104581	2.98194e-4
chr11	126267630	126267712	12645197	0	-	0.439024	(0.42,0.455]	chr11	981863	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000528744.5:ENST00000530680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	3.61323	4.45053	5.28783	2.83914e-5	2.17539e-5	6.46853e-4	5.73422e-4
chr22	21643984	21644075	18303284	0	+	0.604396	(0.59,1]	chr22	1554235	2	CDS	CDS:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.1563	4.4502749999999995	6.74425	0.00708052	1.52822e-7	0.0478776	8.06807e-6
chr1	54875994	54876047	1030817	0	-	0.622642	(0.59,1]	chr1	107025	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1:ENST00000648494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	2.9891200000000002	4.45007	5.91102	0.00823979	2.06903e-5	0.0540283	4.99825e-4
chr3	13328858	13328946	4046320	0	-	0.590909	(0.59,1]	chr3	339558	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.9891200000000002	4.45007	5.91102	0.00823979	2.06903e-5	0.0540283	4.99825e-4
chr1	114707453	114707552	1239480	0	-	0.313131	(0.29,0.33]	chr1	121309	31	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.97941	4.4499450000000005	4.92048	5.81801e-5	7.83331e-8	0.00116944	5.03126e-6
chr19	7640207	7640280	17217840	0	+	0.465753	(0.455,0.49]	chr19	1416904	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.92463	4.44994	4.97525	0.0113417	1.38474e-4	0.0665375	0.00254294
chr2	20218507	20218607	2540535	0	-	0.49	(0.455,0.49]	chr2	228469	127	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.92463	4.44994	4.97525	0.0113417	1.38474e-4	0.0665375	0.00254294
chr3	49104397	49104471	4172524	0	-	0.567568	(0.53,0.59]	chr3	350414	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000636018.1:ENST00000635443.1:ENST00000494767.2:ENST00000635541.1:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5:ENST00000482261.7:ENST00000635375.1:ENST00000634527.1:ENST00000634802.1:ENST00000634602.1:ENST00000635622.1:ENST00000635292.1:ENST00000635231.1:ENST00000635052.1:ENST00000635194.1:ENST00000479495.5:ENST00000418549.3:ENST00000417025.2:ENST00000634609.1:ENST00000635494.1:ENST00000634425.1:ENST00000634953.1:ENST00000634724.1:ENST00000635278.1:ENST00000634359.1:ENST00000482438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	4.23022	4.44979	4.66936	0.00103174	1.38676e-5	0.0121443	3.5918e-4
chr12	31791758	31791858	13283314	0	-	0.52	(0.49,0.53]	chr12	1041530	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3-5	ENSG00000188375.5	ENST00000340398.5	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	3.57766	4.449725	5.32179	2.63311e-5	1.08022e-6	6.73425e-4	4.27337e-5
chr1	21854610	21854687	890976	0	-	0.675325	(0.59,1]	chr1	92398	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	165	2	3.43241	4.449645	5.46688	1.69745e-4	1.30735e-8	0.00299149	9.77308e-7
chr1	108940076	108940142	1217960	0	-	0.378788	(0.36,0.39]	chr1	118649	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6:ENST00000676391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	3.46497	4.44956	5.43415	0.00105709	1.15393e-5	0.0123035	3.09736e-4
chr20	5118768	5118866	17887824	0	-	0.428571	(0.42,0.455]	chr20	1514091	1	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	4.10452	4.44935	4.79418	8.219e-7	2.10099e-7	3.75569e-5	1.05955e-5
chr3	165811496	165811596	3867988	0	+	0.37	(0.36,0.39]	chr3	327895	1562	INTRON	INTRON	LINC01322	ENSG00000244128.7	ENST00000651449.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.63115	4.449195	6.26724	0.0245975	2.79819e-8	0.114841	1.8758e-6
chr1	21596691	21596786	888716	0	-	0.421053	(0.42,0.455]	chr1	91864	6	UTR3	UTR3:EXON_MRNA	RAP1GAP	ENSG00000076864.20	ENST00000290101.8:ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000374763.6:ENST00000542643.6:ENST00000611549.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.8515	4.44915	5.0468	0.0119089	1.33918e-4	0.0686664	0.00229039
chr12	120371592	120371688	13115970	0	+	0.4375	(0.42,0.455]	chr12	1023720	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPS27P25	ENSG00000239881.1	ENST00000477404.1:ENST00000469928.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	22	2	3.8515	4.44915	5.0468	0.0119089	1.33918e-4	0.0686664	0.00229039
chr4	55369831	55369911	4842990	0	+	0.4375	(0.42,0.455]	chr4	398901	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SRD5A3:RP11-177J6.2	ENSG00000128039.13:ENSG00000288695.1	ENST00000679836.1:ENST00000679707.1:ENST00000264228.9:ENST00000679351.1:ENST00000680700.1:ENST00000505210.1:ENST00000678717.1:ENST00000514398.1:ENST00000677177.2:ENST00000677217.1:ENST00000677930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.8515	4.44915	5.0468	0.0119089	1.33918e-4	0.0686664	0.00229039
chr22	41674332	41674432	18520229	0	-	0.46	(0.455,0.49]	chr22	1581350	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	121	2	3.94719	4.44876	4.95033	2.57743e-7	5.08722e-10	1.41561e-5	5.76059e-8
chr2	199307059	199307159	3114863	0	-	0.39	(0.36,0.39]	chr2	274934	340	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.88918	4.448565	6.00795	0.00212816	2.19402e-7	0.0206577	1.09601e-5
chr17	42124977	42125066	16545931	0	-	0.348315	(0.33,0.36]	chr17	1356948	1	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	4.21361	4.44855	4.68349	1.64389e-5	4.29305e-7	4.56784e-4	1.94339e-5
chrX	153794658	153794667	18916170	0	+	0.222222	[0,0.29]	chrX	1611444	1	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000491833.5:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	125	2	4.0627	4.448505000000001	4.83431	2.41195e-7	3.54161e-12	1.33809e-5	6.95332e-10
chr1	203700860	203700923	669468	0	+	0.460317	(0.455,0.49]	chr1	67414	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr2	239919685	239919785	3244945	0	-	0.48	(0.455,0.49]	chr2	285963	63	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr2	241255373	241255442	3250841	0	-	0.463768	(0.455,0.49]	chr2	287085	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1:ENST00000453141.5:ENST00000467435.1:ENST00000470710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr20	25626722	25626821	17744030	0	+	0.484848	(0.455,0.49]	chr20	1497410	19	INTRON	INTRON	ZNF337-AS1	ENSG00000213742.7	ENST00000414393.5:ENST00000439498.5:ENST00000455791.5:ENST00000428254.6:ENST00000420803.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr4	110059602	110059654	5595150	0	-	0.461538	(0.455,0.49]	chr4	446481	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000507451.1:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr5	78475568	78475668	6051409	0	+	0.46	(0.455,0.49]	chr5	474736	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8:ENST00000506858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr5	154815460	154815558	6315025	0	+	0.469388	(0.455,0.49]	chr5	492515	15	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr7	44801362	44801422	8261667	0	+	0.466667	(0.455,0.49]	chr7	629476	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr8	65377937	65378024	9373100	0	+	0.471264	(0.455,0.49]	chr8	716053	5	EXON_PSEUDO	EXON_PSEUDO	PPIAP86	ENSG00000213873.4	ENST00000518241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr9	12973338	12973438	10572352	0	-	0.47	(0.455,0.49]	chr9	800168	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187K14.1:PRDX1P1	ENSG00000285637.2:ENSG00000214121.4	ENST00000649120.1:ENST00000449329.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	21	2	4.0204	4.448365000000001	4.87633	0.00736097	2.95855e-4	0.0490627	0.00432147
chr14	61701439	61701539	14333248	0	+	0.38	(0.36,0.39]	chr14	1120196	21	INTRON	INTRON	HIF1A	ENSG00000100644.17	ENST00000337138.9:ENST00000553999.5:ENST00000557446.5:ENST00000394997.5:ENST00000323441.10:ENST00000539097.2:ENST00000557538.5:ENST00000557206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.58637	4.44827	5.31017	5.84377e-4	2.05606e-9	0.00793559	1.98319e-7
chr1	183477589	183477689	597230	0	+	0.32	(0.29,0.33]	chr1	61990	33	INTRON	INTRON	SMG7	ENSG00000116698.21	ENST00000440812.7:ENST00000367537.7:ENST00000508461.5:ENST00000507691.6:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000638826.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.2566	4.448169999999999	4.63974	0.00303129	4.81181e-4	0.0257942	0.00677016
chr1	225404464	225404526	1528082	0	-	0.354839	(0.33,0.36]	chr1	152783	2	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000441022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	139	2	4.31743	4.44799	4.57855	1.13435e-9	6.80673e-11	1.16914e-7	1.06021e-8
chr12	113389400	113389497	13101748	0	+	0.608247	(0.59,1]	chr12	1022448	9	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	3.16732	4.447855000000001	5.72839	5.6576e-4	7.24021e-5	0.00718071	0.0015254
chr6	132814731	132814768	7406805	0	+	0.540541	(0.53,0.59]	chr6	567783	1	UTR5	UTR5:EXON_MRNA	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	53	1469	2	3.99001	4.447755	4.9055	3.60811e-12	1e-12	7.64338e-10	2.25522e-10
chr1	19239901	19239985	877361	0	-	0.607143	(0.59,1]	chr1	90509	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000467423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.6986	4.44754	5.19648	7.35336e-4	4.89626e-4	0.00921643	0.00639399
chr1	23867897	23867993	898117	0	-	0.697917	(0.59,1]	chr1	93345	1	CDS	CDS:EXON_MRNA	FUCA1	ENSG00000179163.12	ENST00000374479.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.2353	4.44749	4.65968	0.0165254	0.00413632	0.0873033	0.0324998
chr12	57512821	57512892	12902999	0	+	0.605634	(0.59,1]	chr12	1005406	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA:INTRON	MARS1:MIR6758	ENSG00000166986.15:ENSG00000284152.1	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000548944.1:ENST00000546971.5:ENST00000549048.1:ENST00000620653.1:ENST00000548202.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	0	28	2	4.2353	4.44749	4.65968	0.0165254	0.00413632	0.0873033	0.0324998
chr16	56683164	56683177	15679340	0	+	0.615385	(0.59,1]	chr16	1246543	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-343H19.2:MT1X	ENSG00000259827.1:ENSG00000187193.9	ENST00000567563.1:ENST00000394485.5:ENST00000568370.1:ENST00000562939.1:ENST00000564974.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	28	2	4.2353	4.44749	4.65968	0.0165254	0.00413632	0.0873033	0.0324998
chr3	47418320	47418387	4160717	0	-	0.671642	(0.59,1]	chr3	348114	1	CDS	CDS:UTR3:EXON_MRNA	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.2353	4.44749	4.65968	0.0165254	0.00413632	0.0873033	0.0324998
chr18	79270258	79270358	16964605	0	+	0.38	(0.36,0.39]	chr18	1395124	151	INTRON	INTRON	ATP9B	ENSG00000166377.20	ENST00000426216.6:ENST00000307671.12:ENST00000590271.5:ENST00000458297.3:ENST00000490210.6:ENST00000585674.1:ENST00000587878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.16143	4.447445	4.73346	0.00486719	3.2963e-4	0.0366328	0.00504024
chr19	20258356	20258452	17267285	0	+	0.385417	(0.36,0.39]	chr19	1426851	1	EXON_PSEUDO	EXON_PSEUDO	AC078899.1	ENSG00000213985.4	ENST00000521432.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.16143	4.447445	4.73346	0.00486719	3.2963e-4	0.0366328	0.00504024
chr2	46903765	46903865	2629820	0	-	0.36	(0.33,0.36]	chr2	236786	20	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.1284	4.447325	4.76625	0.00407303	3.84608e-4	0.0324137	0.00531017
chr1	181089002	181089100	587421	0	+	0.755102	(0.59,1]	chr1	60874	1	CDS	CDS:EXON_MRNA	IER5	ENSG00000162783.11	ENST00000367577.7	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.26354	4.4473	4.63106	0.0134233	0.00537945	0.0743429	0.0406564
chr19	49908826	49908924	17608184	0	-	0.72449	(0.59,1]	chr19	1484492	6	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IL4I1:NUP62	ENSG00000104951.16:ENSG00000213024.12	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.26354	4.4473	4.63106	0.0134233	0.00537945	0.0743429	0.0406564
chr9	129086138	129086202	10483305	0	+	0.609375	(0.59,1]	chr9	791311	1	CDS	CDS:EXON_MRNA:INTRON	DOLPP1	ENSG00000167130.18	ENST00000372546.9:ENST00000406974.7:ENST00000327812.12:ENST00000412363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.26354	4.4473	4.63106	0.0134233	0.00537945	0.0743429	0.0406564
chr8	38139254	38139346	9291784	0	+	0.478261	(0.455,0.49]	chr8	710654	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	120	2	4.40747	4.447165	4.48686	3.23772e-8	4.62415e-9	2.34166e-6	3.9785e-7
chr22	40827095	40827132	18517896	0	-	0.459459	(0.455,0.49]	chr22	1580943	1	CDS	CDS:UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8:ENST00000620312.4	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.27492	4.446815	6.61871	0.0193827	2.11003e-9	0.0943643	2.02462e-7
chr19	40762900	40762987	17330923	0	+	0.689655	(0.59,1]	chr19	1436153	1	CDS	CDS:EXON_MRNA	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000597353.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	98	2	3.43088	4.44679	5.4627	2.43542e-4	3.20583e-5	0.00399705	7.1108e-4
chr15	72584371	72584469	15018742	0	+	0.346939	(0.33,0.36]	chr15	1180122	12	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.20756	4.44658	4.6856	0.00386591	3.92435e-4	0.0310764	0.00583618
chr5	115620516	115620598	6777054	0	-	0.341463	(0.33,0.36]	chr5	519923	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	4.29439	4.44652	4.59865	9.429e-6	5.76757e-10	2.89287e-4	6.41441e-8
chr7	55646665	55646760	8289096	0	+	0.526316	(0.49,0.53]	chr7	631304	12	EXON_PSEUDO	EXON_PSEUDO	TUBBP6	ENSG00000235207.1	ENST00000416519.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	104	2	3.83319	4.4462399999999995	5.05929	1.34601e-4	1.955e-10	0.00249552	2.46491e-8
chr2	157311248	157311348	2152647	0	+	0.37	(0.36,0.39]	chr2	198631	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.42503	4.446085	4.46714	0.00155822	0.00133228	0.0156889	0.0144372
chr7	135630343	135630406	8553154	0	+	0.380952	(0.36,0.39]	chr7	652870	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.42503	4.446085	4.46714	0.00155822	0.00133228	0.0156889	0.0144372
chr21	34095493	34095591	18104971	0	+	0.459184	(0.455,0.49]	chr21	1534981	3	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	54	2	3.15812	4.44587	5.73362	8.56318e-5	1.35346e-6	0.00160672	5.67444e-5
chr2	235521629	235521729	2443791	0	+	0.41	(0.39,0.42]	chr2	220916	142	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.1206	4.44583	4.77106	0.00597537	3.03764e-4	0.0428562	0.00472028
chr3	131489980	131490080	4450453	0	-	0.36	(0.33,0.36]	chr3	370128	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000425847.6:ENST00000507669.5:ENST00000506487.1:ENST00000512877.1:ENST00000506946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	3.72365	4.445815	5.16798	3.19155e-4	4.80331e-5	0.00491578	9.91058e-4
chr6	157942935	157943032	7516748	0	+	0.319588	(0.29,0.33]	chr6	573600	2	UTR3	UTR3:EXON_MRNA	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	4.19615	4.4457249999999995	4.6953	4.88271e-4	2.2256e-5	0.00638318	5.84518e-4
chr16	53156961	53157058	15665899	0	+	0.340206	(0.33,0.36]	chr16	1245065	9	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.36878	4.44572	4.52266	0.0021194	8.34989e-4	0.0198008	0.0102956
chr2	216785773	216785865	3179159	0	-	0.336957	(0.33,0.36]	chr2	279446	1	EXON_PSEUDO	EXON_PSEUDO	RPL31P14	ENSG00000237930.1	ENST00000433233.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.36878	4.44572	4.52266	0.0021194	8.34989e-4	0.0198008	0.0102956
chrX	153352529	153352628	18914114	0	+	0.353535	(0.33,0.36]	chrX	1610850	47	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3:ENST00000438239.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.36878	4.44572	4.52266	0.0021194	8.34989e-4	0.0198008	0.0102956
chr2	26191442	26191535	2565640	0	-	0.591398	(0.59,1]	chr2	230527	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.57134	4.445695000000001	6.32005	0.00259175	2.12246e-6	0.0237245	7.5146e-5
chr9	14921012	14921111	10581555	0	-	0.484848	(0.455,0.49]	chr9	800961	1	EXON_LNCRNA	EXON_LNCRNA	CLCN3P1	ENSG00000232000.3	ENST00000652129.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	11	221	2	3.99895	4.445695	4.89244	3.30265e-10	2.67024e-11	3.93255e-8	4.61325e-9
chr5	96781127	96781198	6721148	0	-	0.338028	(0.33,0.36]	chr5	517396	2	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000512852.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.92604	4.445455	4.96487	9.26851e-5	3.08307e-7	0.00185187	1.46344e-5
chr1	44775596	44775600	174084	0	+	0.5	(0.49,0.53]	chr1	22411	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000470475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.56183	4.44545	6.32907	0.0261296	3.09658e-8	0.118976	2.04921e-6
chr19	45862486	45862551	17591407	0	-	0.384615	(0.36,0.39]	chr19	1480793	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000602061.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	4.21361	4.44538	4.67715	1.31698e-5	4.639e-7	3.45454e-4	2.31256e-5
chr1	37551061	37551159	947189	0	-	0.428571	(0.42,0.455]	chr1	99497	17	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.0898	4.44522	4.80064	0.00698074	3.0479e-4	0.0473262	0.00472028
chr21	8222560	8222660	18041244	0	+	0.44	(0.42,0.455]	chr21	1530815	2	SS3_PROX	SS3_PROX:INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	4.0898	4.44522	4.80064	0.00698074	3.0479e-4	0.0473262	0.00472028
chr5	69175396	69175466	6019347	0	+	0.428571	(0.42,0.455]	chr5	471247	1	CDS	CDS:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.37329	4.4450199999999995	5.51675	0.00136107	5.14372e-6	0.0141115	1.73456e-4
chr7	103589750	103589828	8964180	0	-	0.435897	(0.42,0.455]	chr7	686248	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	4.24133	4.4446449999999995	4.64796	0.00326918	6.51077e-7	0.0282494	2.77961e-5
chr1	99710877	99710949	1197360	0	-	0.444444	(0.42,0.455]	chr1	116842	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000489209.2:ENST00000492943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.77666	4.44442	5.11218	1.85215e-4	6.01815e-5	0.00296795	0.00130886
chr1	40416779	40416858	153981	0	+	0.56962	(0.53,0.59]	chr1	19273	1	CDS	CDS:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.30943	4.44437	5.57931	0.0018255	1.05602e-5	0.0183913	2.89015e-4
chr3	110727020	110727070	3660229	0	+	0.4	(0.39,0.42]	chr3	313197	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201426.1	ENST00000364556.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	0	19	2	4.3313	4.444265	4.55723	0.00209984	0.00117753	0.0204266	0.0127276
chr9	127692441	127692540	10475576	0	+	0.393939	(0.39,0.42]	chr9	789241	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.3313	4.444265	4.55723	0.00209984	0.00117753	0.0204266	0.0127276
chr11	62629587	62629684	12409747	0	-	0.649485	(0.59,1]	chr11	961261	1	CDS	CDS:UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	375	2	4.35934	4.4438	4.52826	2.40885e-8	4.63608e-9	1.80206e-6	3.98582e-7
chr1	113969955	113970035	418171	0	+	0.4375	(0.42,0.455]	chr1	41184	1	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr11	72977593	72977693	12454063	0	-	0.45	(0.42,0.455]	chr11	968225	553	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr12	69598321	69598341	12943543	0	+	0.45	(0.42,0.455]	chr12	1009010	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr15	77114055	77114155	15388659	0	-	0.44	(0.42,0.455]	chr15	1216690	135	UTR3	UTR3:EXON_MRNA	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr16	16285404	16285455	15569366	0	+	0.431373	(0.42,0.455]	chr16	1233062	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000678148.1:ENST00000574157.5:ENST00000572932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr2	202667383	202667483	2318199	0	+	0.44	(0.42,0.455]	chr2	209894	312	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr6	17759772	17759871	7619822	0	-	0.434343	(0.42,0.455]	chr6	580635	7	UTR3	UTR3:EXON_MRNA	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000502297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.24133	4.443785	4.64624	0.00326918	8.75333e-4	0.0282494	0.0101169
chr8	128010534	128010611	10075407	0	-	0.480519	(0.455,0.49]	chr8	757902	3	EXON_SMALL	EXON_SMALL:EXON_LNCRNA	RP11-55J15.2:RNU4-25P	ENSG00000278275.2:ENSG00000222501.1	ENST00000665457.1:ENST00000410569.1	snRNA	snRNA	snRNA:transcribed_processed_pseudogene	snRNA:processed_transcript	4	100	2	4.32975	4.44356	4.55737	1.27857e-7	1.97119e-8	7.7505e-6	1.39044e-6
chr1	154957122	154957219	1306030	0	-	0.494845	(0.49,0.53]	chr1	131596	2	UTR3	UTR3:EXON_MRNA	PYGO2	ENSG00000163348.4	ENST00000368457.3	protein_coding	protein_coding	protein_coding	protein_coding	6	146	2	3.74489	4.443555	5.14222	2.61077e-7	8.58648e-11	1.42754e-5	1.18546e-8
chr1	161323613	161323670	499708	0	+	0.526316	(0.49,0.53]	chr1	54143	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000515731.1:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.8967	4.4435199999999995	4.99034	0.0128791	1.6002e-4	0.0725185	0.00286408
chr5	32420008	32420103	6519564	0	-	0.526316	(0.49,0.53]	chr5	505046	3	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1:ENST00000505204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.8967	4.4435199999999995	4.99034	0.0128791	1.6002e-4	0.0725185	0.00286408
chr11	57497752	57497845	12394812	0	-	0.526882	(0.49,0.53]	chr11	958774	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	4.32769	4.44349	4.55929	0.00116196	6.54988e-6	0.0130851	1.94116e-4
chr5	113020710	113020809	6153966	0	+	0.333333	(0.33,0.36]	chr5	480731	74	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.33896	4.44346	4.54796	0.00182033	1.2206e-6	0.0183913	4.73214e-5
chr12	124013219	124013316	13130933	0	+	0.494845	(0.49,0.53]	chr12	1026671	4	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	97	2	3.86065	4.443445	5.02624	5.46336e-7	3.25781e-8	2.66561e-5	2.14209e-6
chr9	121349119	121349187	10836504	0	-	0.441176	(0.42,0.455]	chr9	820998	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.52659	4.44328	5.35997	6.87022e-4	2.41298e-5	0.00876781	5.6648e-4
chr6	31880083	31880183	7663006	0	-	0.68	(0.59,1]	chr6	585498	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	EHMT2	ENSG00000204371.11	ENST00000375537.8:ENST00000375530.8:ENST00000375528.8:ENST00000395728.7:ENST00000480912.5:ENST00000494816.5:ENST00000461880.5:ENST00000478491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	29	2	3.98751	4.44304	4.89857	0.0301044	0.00182139	0.129773	0.0176016
chr11	33353185	33353279	11901846	0	+	0.521277	(0.49,0.53]	chr11	909308	2	CDS	CDS:EXON_MRNA	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94177	4.4427	4.94363	0.0104929	2.3417e-4	0.063428	0.00355764
chr15	90486029	90486080	15100640	0	+	0.529412	(0.49,0.53]	chr15	1188186	1	CDS	CDS:UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560218.1:ENST00000558491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94177	4.4427	4.94363	0.0104929	2.3417e-4	0.063428	0.00355764
chr18	63350887	63350983	17155920	0	-	0.510417	(0.49,0.53]	chr18	1408259	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDSR	ENSG00000119537.18	ENST00000645214.2:ENST00000646205.1:ENST00000644624.1:ENST00000591902.6:ENST00000326575.9:ENST00000585750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.94177	4.4427	4.94363	0.0104929	2.3417e-4	0.063428	0.00355764
chr22	41870888	41870961	18383572	0	+	0.520548	(0.49,0.53]	chr22	1564999	1	CDS	CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.94177	4.4427	4.94363	0.0104929	2.3417e-4	0.063428	0.00355764
chr5	56137346	56137438	5977174	0	+	0.5	(0.49,0.53]	chr5	468721	5	EXON_PSEUDO	EXON_PSEUDO	RPL17P22	ENSG00000243592.1	ENST00000467688.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	3.94177	4.4427	4.94363	0.0104929	2.3417e-4	0.063428	0.00355764
chrX	77969067	77969161	19129670	0	-	0.521277	(0.49,0.53]	chrX	1626918	2	CDS	CDS:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.94177	4.4427	4.94363	0.0104929	2.3417e-4	0.063428	0.00355764
chr19	12928598	12928663	17472115	0	-	0.646154	(0.59,1]	chr19	1463352	2	CDS	CDS:EXON_MRNA	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000593021.1:ENST00000592662.5:ENST00000586280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	29	2	4.01545	4.44261	4.86977	0.0251889	0.00246014	0.114168	0.0230058
chr19	14407060	14407144	17242515	0	+	0.619048	(0.59,1]	chr19	1421863	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	0	29	2	4.01545	4.44261	4.86977	0.0251889	0.00246014	0.114168	0.0230058
chr22	38481211	38481281	18367030	0	+	0.471429	(0.455,0.49]	chr22	1562553	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDELR3	ENSG00000100196.11	ENST00000409006.3:ENST00000216014.9:ENST00000471268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	4.37693	4.442489999999999	4.50805	0.00122223	4.5365e-6	0.0135383	1.42727e-4
chr16	70259071	70259164	15996945	0	-	0.580645	(0.53,0.59]	chr16	1284617	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000567490.1:ENST00000569790.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	138	2	3.70393	4.44248	5.18103	1.64739e-5	9.17578e-11	4.57148e-4	1.26183e-8
chr12	1780543	1780637	12688953	0	+	0.468085	(0.455,0.49]	chr12	984468	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5:ENST00000537190.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.31171	4.442445	5.57318	1.87327e-4	6.11867e-6	0.00325006	1.83393e-4
chrX	103217063	103217154	18792582	0	+	0.340659	(0.33,0.36]	chrX	1602161	7	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	4.3061	4.442394999999999	4.57869	1.14009e-6	1.56054e-7	4.91686e-5	8.21059e-6
chr15	50182810	50182905	14925146	0	+	0.631579	(0.59,1]	chr15	1173393	4	CDS	CDS:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.39292	4.44238	5.49184	0.00192565	1.61513e-4	0.0191769	0.00265627
chr1	149812132	149812223	1286912	0	-	0.571429	(0.53,0.59]	chr1	127819	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	H2BC18	ENSG00000203814.6	ENST00000545683.1:ENST00000469483.1:ENST00000369167.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	226	2	3.64799	4.44237	5.23675	2.06855e-7	2.00573e-12	1.04683e-5	4.53892e-10
chr17	1651242	1651310	16401268	0	-	0.647059	(0.59,1]	chr17	1334829	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.84557	4.441955	5.03834	0.0410704	0.00108238	0.163285	0.0118355
chr19	41424723	41424816	17335274	0	+	0.612903	(0.59,1]	chr19	1436941	1	UTR3	UTR3:EXON_MRNA	CTC-435M10.3:BCKDHA	ENSG00000255730.5:ENSG00000248098.12	ENST00000540732.3:ENST00000269980.7:ENST00000457836.6:ENST00000544905.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.84557	4.441955	5.03834	0.0410704	0.00108238	0.163285	0.0118355
chrX	47144525	47144579	19059819	0	-	0.722222	(0.59,1]	chrX	1619811	2	CDS	CDS:EXON_MRNA	NDUFB11	ENSG00000147123.11	ENST00000377811.4:ENST00000276062.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	3.84557	4.441955	5.03834	0.0410704	0.00108238	0.163285	0.0118355
chr5	124809151	124809233	6798016	0	-	0.512195	(0.49,0.53]	chr5	521005	5	EXON_PSEUDO	EXON_PSEUDO	RP11-436H11.1	ENSG00000242814.2	ENST00000464124.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	252	2	3.0566	4.44178	5.82696	7.9669e-6	1e-12	2.49448e-4	2.25522e-10
chr19	14564067	14564097	17243454	0	+	0.533333	(0.53,0.59]	chr19	1422047	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000594807.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000598715.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6:ENST00000600395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	3.69065	4.441765	5.19288	3.04331e-4	9.22873e-5	0.00472028	0.0016906
chr17	38740302	38740402	16531442	0	-	0.56	(0.53,0.59]	chr17	1353321	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.61856	4.441735	5.26491	0.0303021	6.31437e-5	0.129773	0.00124286
chrX	46439799	46439890	19057489	0	-	0.571429	(0.53,0.59]	chrX	1619621	2	EXON_PSEUDO	EXON_PSEUDO	GAPDHP65	ENSG00000235587.2	ENST00000425487.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	26	2	3.61856	4.441735	5.26491	0.0303021	6.31437e-5	0.129773	0.00124286
chr5	154823386	154823467	6929651	0	-	0.54321	(0.53,0.59]	chr5	530586	1	CDS	CDS:UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000524250.5:ENST00000517938.5:ENST00000520581.5:ENST00000521518.5:ENST00000524363.5:ENST00000522825.1:ENST00000519501.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	133	2	4.11241	4.4417349999999995	4.77106	3.13573e-7	1.4031e-8	1.66999e-5	1.04019e-6
chr17	44375054	44375111	16558017	0	-	0.666667	(0.59,1]	chr17	1359422	2	CDS	CDS:EXON_MRNA:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	3.87333	4.44139	5.00945	0.0348991	0.00149725	0.141505	0.0159607
chr19	28538372	28538472	17526199	0	-	0.26	[0,0.29]	chr19	1470950	32	INTRON	INTRON	AC005307.5:AC005616.1	ENSG00000283403.1:ENSG00000266893.1	ENST00000592347.5:ENST00000589999.1	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	4.43821	4.441105	4.444	4.9515e-6	2.70378e-9	1.69269e-4	2.51279e-7
chr12	103942714	103942796	13056871	0	+	0.414634	(0.39,0.42]	chr12	1017345	3	CDS	CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	885	2	3.49966	4.440925	5.38219	2.34853e-9	1e-12	2.40227e-7	2.25522e-10
chr1	12579292	12579352	862204	0	-	0.55	(0.53,0.59]	chr1	87520	1	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	DHRS3:MIR6730	ENSG00000162496.9:ENSG00000276830.1	ENST00000616661.5:ENST00000464917.5:ENST00000622213.1:ENST00000430996.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	97	2	3.66389	4.44092	5.21795	2.13854e-5	8.67811e-9	5.67072e-4	6.8555e-7
chr4	164943659	164943751	5205222	0	+	0.423913	(0.42,0.455]	chr4	420079	5	EXON_PSEUDO	EXON_PSEUDO	NACA3P	ENSG00000121089.4	ENST00000359690.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	77	2	4.05954	4.440805	4.82207	0.00617886	1.82819e-9	0.0439741	1.78862e-7
chr10	71817440	71817476	11563220	0	-	0.527778	(0.49,0.53]	chr10	879959	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	4.13817	4.440505	4.74284	2.96405e-7	5.61303e-8	1.59277e-5	3.39862e-6
chr1	2307947	2308045	7385	0	+	0.397959	(0.39,0.42]	chr1	1667	13	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.56097	4.4403299999999994	5.31969	6.12149e-4	2.68682e-5	0.00818575	6.19143e-4
chr17	48863547	48863647	16255734	0	+	0.43	(0.42,0.455]	chr17	1317495	6	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000258947.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.20049	4.44015	4.67981	5.38444e-4	1.49765e-5	0.00744072	3.83096e-4
chr16	400589	400671	15481513	0	+	0.414634	(0.39,0.42]	chr16	1224422	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000620944.4:ENST00000621774.4:ENST00000219479.7:ENST00000448828.5:ENST00000444498.5:ENST00000460297.1:ENST00000433358.5:ENST00000468031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	3.23057	4.439875000000001	5.64918	3.34829e-4	3.47137e-6	0.00509483	1.13687e-4
chr5	138420790	138420876	6244496	0	+	0.523256	(0.49,0.53]	chr5	486556	2	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.60476	4.439765	5.27477	4.52633e-4	4.14521e-5	0.00642319	8.8376e-4
chr16	28814078	28814177	15907643	0	-	0.474747	(0.455,0.49]	chr16	1273865	2	EXON_PSEUDO	EXON_PSEUDO	RP11-1348G14.1	ENSG00000240634.1	ENST00000469929.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	37	2	4.1185600000000004	4.43952	4.76048	3.99985e-4	2.49433e-5	0.00588767	5.8178e-4
chr7	99891477	99891575	8948958	0	-	0.489796	(0.455,0.49]	chr7	683376	12	UTR3	UTR3:EXON_MRNA:INTRON	TRIM4	ENSG00000146833.16	ENST00000447480.5:ENST00000349062.7:ENST00000355947.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.1185600000000004	4.43952	4.76048	3.99985e-4	2.49433e-5	0.00588767	5.8178e-4
chr22	28794554	28794642	18464261	0	-	0.352273	(0.33,0.36]	chr22	1574926	1	UTR3	UTR3:EXON_MRNA	XBP1	ENSG00000100219.16	ENST00000216037.10:ENST00000403532.7:ENST00000484256.1:ENST00000611155.4:ENST00000405219.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.46908	4.439315000000001	5.40955	0.00114872	1.14206e-5	0.0130528	3.08108e-4
chr22	21696746	21696824	18303778	0	+	0.525641	(0.49,0.53]	chr22	1554387	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1:ENST00000680573.1:ENST00000462188.1:ENST00000681027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	4.03034	4.43889	4.84744	3.70203e-4	4.26396e-5	0.00515475	9.97006e-4
chr14	21352173	21352273	14521130	0	-	0.42	(0.39,0.42]	chr14	1137303	8	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	4.044	4.43879	4.83358	1.34261e-6	1.20779e-7	5.13723e-5	7.40241e-6
chr19	17403694	17403794	17495792	0	-	0.66	(0.59,1]	chr19	1467247	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2:ENST00000533098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	205	2	4.17336	4.438219999999999	4.70308	2.09509e-6	7.98278e-8	7.43277e-5	5.11469e-6
chr4	75644533	75644633	5472858	0	-	0.37	(0.36,0.39]	chr4	438361	28	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	3.77672	4.43806	5.0994	4.68763e-5	1.05661e-6	0.00107286	4.18995e-5
chr11	85636384	85636461	12045178	0	+	0.350649	(0.33,0.36]	chr11	928801	3	UTR3	UTR3:EXON_MRNA	TMEM126B	ENSG00000171204.13	ENST00000393375.5:ENST00000358867.11:ENST00000534341.1:ENST00000526822.5:ENST00000529197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	3.67729	4.438025	5.19876	2.37278e-5	1.89665e-5	6.1689e-4	4.64808e-4
chr12	104265836	104265935	13058279	0	+	0.494949	(0.49,0.53]	chr12	1017574	1	INTRON	INTRON	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	4.31667	4.43798	4.55929	0.00116196	1.62178e-7	0.0130851	8.48798e-6
chr1	206648273	206648372	682550	0	+	0.464646	(0.455,0.49]	chr1	68978	10	CDS	CDS:UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.81275	4.437785	5.06282	0.0138827	1.16789e-4	0.0760883	0.0020505
chr15	66491172	66491265	14983875	0	+	0.462366	(0.455,0.49]	chr15	1177919	7	UTR3	UTR3:EXON_MRNA	MAP2K1	ENSG00000169032.10	ENST00000307102.10:ENST00000566326.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.81275	4.437785	5.06282	0.0138827	1.16789e-4	0.0760883	0.0020505
chr7	39301263	39301363	8238660	0	+	0.49	(0.455,0.49]	chr7	627964	933	INTRON	INTRON	POU6F2	ENSG00000106536.21	ENST00000674059.1:ENST00000673891.1:ENST00000518318.7:ENST00000403058.6:ENST00000517348.1:ENST00000524147.5:ENST00000520104.5:ENST00000673818.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.81275	4.437785	5.06282	0.0138827	1.16789e-4	0.0760883	0.0020505
chr19	11133532	11133628	17230327	0	+	0.385417	(0.36,0.39]	chr19	1419642	22	UTR3	UTR3:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.1561	4.43768	4.71926	5.29682e-4	2.14257e-5	0.006804	5.67278e-4
chr6	32827869	32827968	7667121	0	-	0.383838	(0.36,0.39]	chr6	586771	26	UTR3	UTR3:EXON_MRNA:INTRON	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.1561	4.43768	4.71926	5.29682e-4	2.14257e-5	0.006804	5.67278e-4
chr12	120699501	120699599	13117501	0	+	0.479592	(0.455,0.49]	chr12	1024005	31	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.8036	4.43766	5.07172	1.59194e-4	8.3067e-5	0.00263091	0.00171126
chr19	15835851	15835947	17246595	0	+	0.479167	(0.455,0.49]	chr19	1422765	12	EXON_LNCRNA	EXON_LNCRNA	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000655708.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	4.16204	4.437545	4.71305	1.83061e-5	3.85068e-7	4.99708e-4	1.76303e-5
chr12	57749453	57749504	13357748	0	-	0.490196	(0.49,0.53]	chr12	1053012	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000552713.5:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	134	2	4.18697	4.43751	4.68805	4.38216e-7	3.38852e-10	2.20292e-5	4.01696e-8
chr12	56131039	56131113	12898265	0	+	0.5	(0.49,0.53]	chr12	1004216	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4:ENST00000550986.1:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	95	2	3.29825	4.437505	5.57676	0.00019429700000000001	2.26041e-10	0.00332542	2.80446e-8
chr11	33353373	33353468	11901848	0	+	0.473684	(0.455,0.49]	chr11	909308	4	CDS	CDS:EXON_MRNA	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.12843	4.437495	5.74656	0.00392855	1.95355e-6	0.0322851	7.00948e-5
chr14	32484712	32484800	14571979	0	-	0.488636	(0.455,0.49]	chr14	1141842	8	EXON_PSEUDO	EXON_PSEUDO	MTCO1P2	ENSG00000259045.1	ENST00000554243.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	37	2	3.12843	4.437495	5.74656	0.00392855	1.95355e-6	0.0322851	7.00948e-5
chr11	60899226	60899304	12402787	0	-	0.538462	(0.53,0.59]	chr11	959906	2	CDS	CDS:EXON_MRNA:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	4.14645	4.437335	4.72822	2.32261e-5	4.40858e-7	6.06413e-4	1.99026e-5
chr1	42927040	42927140	966980	0	-	0.62	(0.59,1]	chr1	101869	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	599	2	4.25473	4.43679	4.61885	3.54529e-9	5.53989e-10	3.43149e-7	6.21869e-8
chr1	65348312	65348412	250786	0	+	0.32	(0.29,0.33]	chr1	28644	22	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000483402.1:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.41812	4.43673	4.45534	0.00162106	0.00110984	0.0161179	0.0127344
chr18	1347151	1347251	16976157	0	-	0.31	(0.29,0.33]	chr18	1396222	232	INTRON	INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	4.41812	4.43673	4.45534	0.00162106	0.00110984	0.0161179	0.0127344
chr8	125005524	125005615	9595420	0	+	0.417582	(0.39,0.42]	chr8	727905	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	7	176	2	4.08157	4.43663	4.79169	1.0443e-6	1.68732e-12	4.57959e-5	3.59606e-10
chr14	102042691	102042748	14495826	0	+	0.54386	(0.53,0.59]	chr14	1133248	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644888.1:ENST00000644239.2:ENST00000643591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.75615	4.43661	5.11707	2.16536e-4	1.35965e-4	0.00361336	0.00231202
chr16	70541751	70541834	15729847	0	+	0.445783	(0.42,0.455]	chr16	1252929	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	4.22524	4.4366	4.64796	1.2079e-5	6.51077e-7	3.52389e-4	2.77961e-5
chr10	43387021	43387117	11461763	0	-	0.5625	(0.53,0.59]	chr10	873955	4	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	4.00995	4.436535	4.86312	1.99748e-6	1.54273e-7	7.14901e-5	9.14919e-6
chr12	776348	776448	12680305	0	+	0.37	(0.36,0.39]	chr12	984008	217	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.77302	4.43621	5.0994	0.0162599	4.68763e-5	0.0866586	0.00107286
chr19	19121307	19121364	17502072	0	-	0.649123	(0.59,1]	chr19	1468659	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000591031.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	114	2	4.32406	4.436195	4.54833	2.43308e-5	5.67833e-6	6.29277e-4	1.72297e-4
chr11	67398358	67398446	12427588	0	-	0.477273	(0.455,0.49]	chr11	965287	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	3.23859	4.435955	5.63332	1.41582e-5	4.15159e-6	4.01358e-4	1.32627e-4
chr10	50382602	50382702	11487290	0	-	0.41	(0.39,0.42]	chr10	876738	379	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.49145	4.435885	5.38032	0.0350273	9.82886e-6	0.141505	2.98194e-4
chr1	1790394	1790461	829719	0	-	0.567164	(0.53,0.59]	chr1	82946	1	CDS	CDS:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5:ENST00000471354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.43279	4.43571	4.43863	0.0026472	0.00254763	0.0233955	0.0231864
chr1	151266307	151266373	471386	0	+	0.575758	(0.53,0.59]	chr1	48106	1	CDS	CDS:UTR3:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000476855.5:ENST00000445776.1:ENST00000427779.5:ENST00000470396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.43279	4.43571	4.43863	0.0026472	0.00254763	0.0233955	0.0231864
chr11	119028355	119028426	12626374	0	-	0.549296	(0.53,0.59]	chr11	979727	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6:ENST00000525787.1:ENST00000534384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.43279	4.43571	4.43863	0.0026472	0.00254763	0.0233955	0.0231864
chr19	40751127	40751202	17330799	0	+	0.546667	(0.53,0.59]	chr19	1436126	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.43279	4.43571	4.43863	0.0026472	0.00254763	0.0233955	0.0231864
chr2	219251638	219251713	3191532	0	-	0.546667	(0.53,0.59]	chr2	280992	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2:ENST00000427737.6:ENST00000456818.5:ENST00000462806.5:ENST00000447205.1:ENST00000475683.1:ENST00000425551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.43279	4.43571	4.43863	0.0026472	0.00254763	0.0233955	0.0231864
chr8	143817713	143817782	10146171	0	-	0.550725	(0.53,0.59]	chr8	762870	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5:ENST00000524570.5:ENST00000532884.1:ENST00000526459.5:ENST00000527744.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.43279	4.43571	4.43863	0.0026472	0.00254763	0.0233955	0.0231864
chr8	140515342	140515437	9641870	0	+	0.494737	(0.49,0.53]	chr8	730104	2	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10:ENST00000519618.1:ENST00000523569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	82	2	4.16626	4.435560000000001	4.70486	5.42608e-7	3.98937e-7	2.37553e-5	2.04083e-5
chr11	82900302	82900402	12499872	0	-	0.68	(0.59,1]	chr11	971503	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5:ENST00000533126.1:ENST00000680341.1:ENST00000681126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	4.42422	4.435465000000001	4.44671	0.00931497	1.17291e-5	0.0586162	3.12994e-4
chr3	136301029	136301111	3762862	0	+	0.463415	(0.455,0.49]	chr3	321869	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.3605	4.435465000000001	5.51043	0.00147278	9.08728e-6	0.0157578	2.53877e-4
chrX	155943097	155943193	18924241	0	+	0.395833	(0.39,0.42]	chrX	1612670	11	UTR3	UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.05461	4.4352599999999995	5.81591	8.55091e-4	1.11558e-6	0.0105173	4.4003e-5
chr4	145119931	145120005	5146118	0	+	0.324324	(0.29,0.33]	chr4	416360	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ABCE1	ENSG00000164163.11	ENST00000296577.9:ENST00000507193.5:ENST00000502803.5:ENST00000506506.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	4.24387	4.435090000000001	4.62631	0.00263476	6.57711e-7	0.0239118	2.80312e-5
chr11	3827464	3827562	12238981	0	-	0.632653	(0.59,1]	chr11	945691	6	UTR3	UTR3:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1:ENST00000396978.1:ENST00000533217.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.8606	4.4350249999999996	5.00945	0.00149725	2.2997e-4	0.0159607	0.00352524
chr13	39013483	39013583	13976233	0	-	0.59	(0.53,0.59]	chr13	1096566	9	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.17542	4.4347650000000005	5.69411	3.78824e-4	5.01544e-6	0.00525548	1.7067e-4
chr11	77793047	77793147	12475090	0	-	0.28	[0,0.29]	chr11	970445	280	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.1103	4.434755	4.75921	0.00493104	2.77035e-4	0.0366648	0.00444204
chr1	155289488	155289587	1307525	0	-	0.484848	(0.455,0.49]	chr1	132189	3	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.74211	4.43468	6.12725	0.00330545	1.23635e-7	0.028478	6.7072e-6
chr17	81005032	81005132	16378271	0	+	0.59	(0.53,0.59]	chr17	1331304	18	EXON_MRNA	EXON_MRNA:INTRON	CHMP6:CTD-2561B21.8	ENSG00000176108.9:ENSG00000280351.2	ENST00000571457.1:ENST00000625110.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	1	40	2	3.46349	4.4342299999999994	5.40497	9.2216e-4	2.83308e-5	0.0104432	7.12614e-4
chr16	177029	177081	15480746	0	+	0.711538	(0.59,1]	chr16	1224206	1	CDS	CDS:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1:ENST00000487791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	1445	2	3.82656	4.4341800000000005	5.0418	2.98122e-9	1e-12	2.72276e-7	2.46312e-10
chr2	10344652	10344752	1630307	0	+	0.51	(0.49,0.53]	chr2	161786	141	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.07719	4.434025	4.79086	0.0074411	4.20783e-4	0.0492519	0.00611538
chrX	71110155	71110225	19106754	0	-	0.528571	(0.49,0.53]	chrX	1625359	1	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	RP5-1091N2.12:IL2RG	ENSG00000285171.1:ENSG00000147168.13	ENST00000644911.1:ENST00000645518.1:ENST00000646106.1:ENST00000646505.1:ENST00000644022.1:ENST00000644708.1:ENST00000645266.1:ENST00000647492.1:ENST00000642473.1:ENST00000374202.7:ENST00000276110.6:ENST00000374188.7:ENST00000512747.3:ENST00000482750.5:ENST00000456850.6:ENST00000464642.5:ENST00000487883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.07719	4.434025	4.79086	0.0074411	4.20783e-4	0.0492519	0.00611538
chr1	21872281	21872377	891178	0	-	0.583333	(0.53,0.59]	chr1	92486	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000644714.1	protein_coding	protein_coding	protein_coding	protein_coding	6	172	2	4.384	4.43394	4.48388	1.10412e-7	4.48962e-10	6.85761e-6	5.16265e-8
chr11	314331	314392	11756467	0	+	0.622951	(0.59,1]	chr11	897765	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000680299.1:ENST00000679353.1:ENST00000679982.1:ENST00000681350.1:ENST00000680855.1:ENST00000680310.1:ENST00000681702.1:ENST00000681111.1:ENST00000680342.1:ENST00000680870.1:ENST00000681293.1:ENST00000680802.1:ENST00000528780.5:ENST00000328221.5:ENST00000681761.1:ENST00000681821.1:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	200	2	4.33611	4.43374	4.53137	9.23052e-7	1.94432e-7	4.13026e-5	9.92968e-6
chr10	28595780	28595867	10990381	0	+	0.471264	(0.455,0.49]	chr10	835874	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	4.22752	4.43365	4.63978	6.94032e-4	1.24055e-5	0.00876781	3.28918e-4
chr18	21866562	21866661	16779514	0	+	0.484848	(0.455,0.49]	chr18	1384234	20	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.22752	4.43365	4.63978	6.94032e-4	1.24055e-5	0.00876781	3.28918e-4
chr15	74036143	74036227	15025401	0	+	0.52381	(0.49,0.53]	chr15	1180865	2	UTR3	UTR3:EXON_MRNA:INTRON	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000563500.5:ENST00000567606.5:ENST00000562086.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.12263	4.433505	4.74438	0.00591451	5.91752e-4	0.0427941	0.00743488
chr17	4797437	4797503	16093288	0	+	0.515152	(0.49,0.53]	chr17	1294584	1	CDS	CDS:EXON_MRNA	PSMB6	ENSG00000142507.10	ENST00000614486.4:ENST00000270586.8:ENST00000571309.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.12263	4.433505	4.74438	0.00591451	5.91752e-4	0.0427941	0.00743488
chr2	128159582	128159651	2060182	0	+	0.507246	(0.49,0.53]	chr2	193290	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7:ENST00000488439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.12263	4.433505	4.74438	0.00591451	5.91752e-4	0.0427941	0.00743488
chr7	30923727	30923826	8206210	0	+	0.494949	(0.49,0.53]	chr7	626040	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000409899.5:ENST00000409611.1:ENST00000651610.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.12263	4.433505	4.74438	0.00591451	5.91752e-4	0.0427941	0.00743488
chr9	6835296	6835390	10173734	0	+	0.521277	(0.49,0.53]	chr9	766316	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	KDM4C:ACTG1P14	ENSG00000107077.19:ENSG00000230581.2	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5:ENST00000446382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	21	2	4.12263	4.433505	4.74438	0.00591451	5.91752e-4	0.0427941	0.00743488
chr3	50606488	50606581	4179534	0	-	0.258065	[0,0.29]	chr3	352073	1	UTR3	UTR3:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	4.10746	4.433335	4.75921	2.77035e-4	2.65773e-5	0.00444204	6.14226e-4
chr3	150563514	150563521	3807748	0	+	0.285714	[0,0.29]	chr3	324997	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	4.10746	4.433335	4.75921	2.77035e-4	2.65773e-5	0.00444204	6.14226e-4
chr1	167918322	167918359	1349100	0	-	0.27027	[0,0.29]	chr1	138225	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.29246	4.4333100000000005	4.57416	0.00254021	6.75561e-4	0.0227257	0.00873562
chr7	107770177	107770275	8986839	0	-	0.061224	[0,0.29]	chr7	687461	19	INTRON	INTRON	SLC26A3	ENSG00000091138.13	ENST00000379083.7:ENST00000340010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.29246	4.4333100000000005	4.57416	0.00254021	6.75561e-4	0.0227257	0.00873562
chr17	44374709	44374760	16558012	0	-	0.568627	(0.53,0.59]	chr17	1359420	2	CDS	CDS:EXON_MRNA:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.99819	4.43321	4.86823	0.0111308	4.35895e-4	0.0665375	0.00623608
chr3	129252622	129252694	3730361	0	+	0.583333	(0.53,0.59]	chr3	318881	1	CDS	CDS:UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000513965.5:ENST00000515725.5:ENST00000504350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.99819	4.43321	4.86823	0.0111308	4.35895e-4	0.0665375	0.00623608
chr7	139620400	139620481	9103874	0	-	0.567901	(0.53,0.59]	chr7	694679	1	CDS	CDS:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.99819	4.43321	4.86823	0.0111308	4.35895e-4	0.0665375	0.00623608
chr16	18792756	18792855	15877073	0	-	0.373737	(0.36,0.39]	chr16	1269296	12	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	3.53529	4.433165	5.33104	6.0978e-5	8.32445e-12	0.00132411	1.47872e-9
chrX	119470372	119470442	18841524	0	+	0.514286	(0.49,0.53]	chrX	1605564	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9:ENST00000460013.1:ENST00000463551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	186	2	4.02859	4.433135	4.83768	4.87013e-9	7.56764e-11	4.51104e-7	1.06374e-8
chr2	85551896	85551981	2770703	0	-	0.564706	(0.53,0.59]	chr2	245806	2	CDS	CDS:EXON_MRNA:INTRON	GGCX	ENSG00000115486.12	ENST00000233838.9:ENST00000465637.5:ENST00000430215.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.00393	4.433125	4.86232	0.0108084	4.57805e-4	0.064368	0.00608573
chr7	143863000	143863099	9116848	0	-	0.535354	(0.53,0.59]	chr7	696356	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.00393	4.433125	4.86232	0.0108084	4.57805e-4	0.064368	0.00608573
chr9	98084053	98084152	10759965	0	-	0.535354	(0.53,0.59]	chr9	814725	24	INTRON	INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.00393	4.433125	4.86232	0.0108084	4.57805e-4	0.064368	0.00608573
chr9	109033306	109033403	10787902	0	-	0.536082	(0.53,0.59]	chr9	816807	1	CDS	CDS:UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000472207.5:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.00393	4.433125	4.86232	0.0108084	4.57805e-4	0.064368	0.00608573
chr1	109094416	109094497	396866	0	+	0.45679	(0.455,0.49]	chr1	38417	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1:ENST00000479160.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.10535	4.4329149999999995	4.76048	0.0064531	3.99985e-4	0.0450905	0.00588767
chr19	7640058	7640129	17217837	0	+	0.478873	(0.455,0.49]	chr19	1416902	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.10535	4.4329149999999995	4.76048	0.0064531	3.99985e-4	0.0450905	0.00588767
chr22	20770592	20770692	18439175	0	-	0.47	(0.455,0.49]	chr22	1571964	45	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	4.10535	4.4329149999999995	4.76048	0.0064531	3.99985e-4	0.0450905	0.00588767
chrX	152736540	152736633	18912261	0	+	0.483871	(0.455,0.49]	chrX	1610509	4	CDS	CDS:EXON_MRNA:INTRON	MAGEA12:CSAG4	ENSG00000213401.10:ENSG00000242599.7	ENST00000393869.8:ENST00000357916.8:ENST00000361201.8:ENST00000393900.4	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	20	2	4.10535	4.4329149999999995	4.76048	0.0064531	3.99985e-4	0.0450905	0.00588767
chr7	137882483	137882555	9097099	0	-	0.666667	(0.59,1]	chr7	694038	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.84944	4.43283	6.01622	0.0128238	1.18141e-5	0.0719798	3.14877e-4
chr1	43977600	43977695	169386	0	+	0.452632	(0.42,0.455]	chr1	21856	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.19078	4.4328199999999995	5.67486	0.00310864	3.42598e-6	0.0274272	1.12506e-4
chr3	23134642	23134733	3353748	0	+	0.428571	(0.42,0.455]	chr3	294017	4	EXON_PSEUDO	EXON_PSEUDO	RPL24P7	ENSG00000215016.2	ENST00000399435.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.19078	4.4328199999999995	5.67486	0.00310864	3.42598e-6	0.0274272	1.12506e-4
chr3	185490664	185490761	4625808	0	-	0.391753	(0.39,0.42]	chr3	382039	12	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	3.75753	4.43257	5.10761	2.04026e-4	5.12039e-5	0.00320361	0.00114668
chr16	20777372	20777441	15582802	0	+	0.42029	(0.42,0.455]	chr16	1234750	1	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	2.89895	4.4325	5.96605	2.68742e-5	4.23361e-12	6.86726e-4	8.13791e-10
chr20	31544946	31545035	17748556	0	+	0.47191	(0.455,0.49]	chr20	1497851	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	127	2	4.15342	4.432415	4.71141	5.52725e-7	2.40834e-10	2.69113e-5	2.97531e-8
chr2	157284364	157284448	2152368	0	+	0.47619	(0.455,0.49]	chr2	198579	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	4.27906	4.4322099999999995	4.58536	8.82347e-6	9.22269e-7	2.48294e-4	4.12764e-5
chr16	1841819	1841896	15823081	0	-	0.363636	(0.36,0.39]	chr16	1261677	1	CDS	CDS:EXON_MRNA:INTRON	MEIOB:LA16c-429E7.1	ENSG00000162039.17:ENSG00000260541.1	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000490154.1:ENST00000570247.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	49	2	2.63702	4.43208	6.22714	0.00212882	3.88985e-8	0.0206577	2.48416e-6
chr10	22329365	22329442	10962210	0	+	0.467532	(0.455,0.49]	chr10	834312	3	CDS	CDS:EXON_MRNA	COMMD3-BMI1:BMI1	ENSG00000269897.5:ENSG00000168283.14	ENST00000602390.5:ENST00000376663.8:ENST00000443519.1:ENST00000490311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.20189	4.431995	4.6621	0.00397662	7.84472e-4	0.0322851	0.00927662
chr14	21022947	21023015	14519619	0	-	0.470588	(0.455,0.49]	chr14	1137114	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	NDRG2:MIR6717	ENSG00000165795.24:ENSG00000284122.1	ENST00000350792.7:ENST00000298687.9:ENST00000397858.5:ENST00000360463.7:ENST00000397853.7:ENST00000556147.6:ENST00000553503.5:ENST00000555158.5:ENST00000397847.6:ENST00000397851.6:ENST00000554143.5:ENST00000557353.5:ENST00000298684.9:ENST00000397844.6:ENST00000403829.7:ENST00000397856.7:ENST00000556008.5:ENST00000555026.5:ENST00000556974.5:ENST00000553867.5:ENST00000555695.5:ENST00000557169.5:ENST00000555869.5:ENST00000557182.5:ENST00000555733.5:ENST00000555384.5:ENST00000554094.5:ENST00000553741.5:ENST00000557198.5:ENST00000553442.5:ENST00000556420.5:ENST00000553784.5:ENST00000555142.5:ENST00000557149.5:ENST00000555767.5:ENST00000554531.5:ENST00000557264.5:ENST00000557676.5:ENST00000556924.5:ENST00000556329.6:ENST00000554379.5:ENST00000554398.5:ENST00000554472.5:ENST00000554483.5:ENST00000557616.5:ENST00000555657.5:ENST00000556457.5:ENST00000557274.5:ENST00000556688.5:ENST00000557669.5:ENST00000557113.5:ENST00000553900.5:ENST00000557318.1:ENST00000554561.5:ENST00000554419.5:ENST00000553563.5:ENST00000554489.5:ENST00000556561.5:ENST00000554893.5:ENST00000554833.5:ENST00000554415.5:ENST00000622747.1:ENST00000557167.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	0	20	2	4.20189	4.431995	4.6621	0.00397662	7.84472e-4	0.0322851	0.00927662
chr3	32528523	32528601	4110402	0	-	0.474359	(0.455,0.49]	chr3	343349	2	CDS	CDS:EXON_MRNA	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.20189	4.431995	4.6621	0.00397662	7.84472e-4	0.0322851	0.00927662
chr7	44571572	44571654	8800167	0	-	0.487805	(0.455,0.49]	chr7	671312	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX56	ENSG00000136271.11	ENST00000258772.10:ENST00000446987.5:ENST00000421223.5:ENST00000485367.5:ENST00000467318.5:ENST00000433257.5:ENST00000431640.5:ENST00000415758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.20189	4.431995	4.6621	0.00397662	7.84472e-4	0.0322851	0.00927662
chr19	38840187	38840280	17561107	0	-	0.731183	(0.59,1]	chr19	1475078	2	CDS	CDS:UTR3:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	2.9891200000000002	4.43165	5.87418	0.00823979	2.5071e-5	0.0540283	5.82734e-4
chr18	57607443	57607511	17137531	0	-	0.441176	(0.42,0.455]	chr18	1407162	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.7523	4.431635	6.11097	0.0153283	1.55657e-7	0.0828908	8.1934e-6
chr10	121713703	121713800	11290622	0	+	0.381443	(0.36,0.39]	chr10	860312	2	EXON_PSEUDO	EXON_PSEUDO	RPS15AP5	ENSG00000223540.1	ENST00000436276.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.0322	4.43136	4.83052	0.00588589	3.15227e-4	0.0427941	0.00452711
chr13	42319916	42320014	13709034	0	+	0.387755	(0.36,0.39]	chr13	1080151	8	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.0322	4.43136	4.83052	0.00588589	3.15227e-4	0.0427941	0.00452711
chr22	20407565	20407664	18298221	0	+	0.383838	(0.36,0.39]	chr22	1553394	7	UTR3	UTR3:EXON_MRNA	ZNF74	ENSG00000185252.19	ENST00000611540.4:ENST00000400451.7:ENST00000357502.5:ENST00000493734.5:ENST00000437275.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.0322	4.43136	4.83052	0.00588589	3.15227e-4	0.0427941	0.00452711
chr3	37134835	37134924	3411141	0	+	0.382022	(0.36,0.39]	chr3	296366	3	EXON_PSEUDO	EXON_PSEUDO	UBE2D3P2	ENSG00000225558.1	ENST00000424409.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.0322	4.43136	4.83052	0.00588589	3.15227e-4	0.0427941	0.00452711
chr1	19238794	19238857	877348	0	-	0.444444	(0.42,0.455]	chr1	90501	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.65978	4.43123	5.20268	3.59669e-5	2.09396e-5	8.71318e-4	5.04211e-4
chr2	96277538	96277626	2790281	0	-	0.522727	(0.49,0.53]	chr2	248700	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.49797	4.43111	6.36425	0.00843736	2.32873e-8	0.0546021	1.60638e-6
chr1	202963641	202963727	1453385	0	-	0.523256	(0.49,0.53]	chr1	146113	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYB5R1	ENSG00000159348.13	ENST00000367249.9:ENST00000497655.1:ENST00000482572.5:ENST00000446185.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.72252	4.43075	6.13898	0.0161474	1.37435e-7	0.0860154	7.34618e-6
chr15	41301437	41301537	14885435	0	+	0.42	(0.39,0.42]	chr15	1169280	35	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	49	2	3.96902	4.4306	4.89218	1.6518e-4	2.36324e-6	0.0029267300000000002	8.28137e-5
chr12	4687008	4687108	12707069	0	+	0.55	(0.53,0.59]	chr12	985900	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-234B24.6:NDUFA9	ENSG00000255639.3:ENSG00000139180.11	ENST00000648836.1:ENST00000266544.10:ENST00000543979.1:ENST00000544741.2:ENST00000540688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.82407	4.43056	5.03705	0.0179666	0.00020199200000000001	0.0918323	0.00317801
chr14	65280893	65280984	14347362	0	+	0.571429	(0.53,0.59]	chr14	1121778	4	EXON_PSEUDO	EXON_PSEUDO	PTBP1P	ENSG00000259078.2	ENST00000554374.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	3.82407	4.43056	5.03705	0.0179666	0.00020199200000000001	0.0918323	0.00317801
chr16	30084760	30084855	15628543	0	+	0.557895	(0.53,0.59]	chr16	1239835	2	CDS	CDS:UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000563732.5:ENST00000279387.12:ENST00000563200.5:ENST00000566749.5:ENST00000562664.5:ENST00000627746.2:ENST00000562222.5:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.82407	4.43056	5.03705	0.0179666	0.00020199200000000001	0.0918323	0.00317801
chr16	67950405	67950493	15991198	0	-	0.579545	(0.53,0.59]	chr16	1283587	2	CDS	CDS:EXON_MRNA	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000576616.5:ENST00000570802.5:ENST00000537830.6:ENST00000573023.6:ENST00000572476.1:ENST00000574665.5:ENST00000572766.2:ENST00000573702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.82407	4.43056	5.03705	0.0179666	0.00020199200000000001	0.0918323	0.00317801
chr17	30830900	30830983	16189389	0	+	0.542169	(0.53,0.59]	chr17	1306846	1	EXON_PSEUDO	EXON_PSEUDO	CTD-2349P21.1	ENSG00000242439.1	ENST00000490847.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	3.82407	4.43056	5.03705	0.0179666	0.00020199200000000001	0.0918323	0.00317801
chr17	81574873	81574972	16708367	0	-	0.444444	(0.42,0.455]	chr17	1377478	24	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	3.84538	4.4305	5.01562	1.2691e-4	1.01971e-4	0.00219756	0.0019861
chr12	110342227	110342300	13085864	0	+	0.561644	(0.53,0.59]	chr12	1020532	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.16037	4.430315	6.70026	0.0254312	3.08274e-9	0.117089	2.80081e-7
chr1	25351625	25351693	104198	0	+	0.441176	(0.42,0.455]	chr1	12212	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1:ENST00000487234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	101	2	4.14466	4.4303	4.71594	5.95085e-7	4.89851e-9	2.84227e-5	4.16525e-7
chr11	60898861	60898931	12402782	0	-	0.571429	(0.53,0.59]	chr11	959902	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1:ENST00000539960.1:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.30195	4.430275	4.5586	0.00421989	0.00161229	0.0328662	0.0169168
chr8	96835110	96835180	9502407	0	+	0.585714	(0.53,0.59]	chr8	722602	3	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.30195	4.430275	4.5586	0.00421989	0.00161229	0.0328662	0.0169168
chr1	1354775	1354869	827386	0	-	0.648936	(0.59,1]	chr1	82357	2	CDS	CDS:EXON_MRNA	MXRA8	ENSG00000162576.17	ENST00000342753.8:ENST00000309212.11:ENST00000477278.3:ENST00000445648.5:ENST00000476718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	4.11672	4.43025	4.74378	0.0222273	0.00312942	0.105595	0.0264364
chr12	104757136	104757231	13062184	0	+	0.642105	(0.59,1]	chr12	1017752	3	CDS	CDS:EXON_MRNA	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.11672	4.43025	4.74378	0.0222273	0.00312942	0.105595	0.0264364
chr16	16121974	16122074	15568552	0	+	0.63	(0.59,1]	chr16	1232824	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000574761.1:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	4.11672	4.43025	4.74378	0.0222273	0.00312942	0.105595	0.0264364
chr16	21835206	21835303	15889947	0	-	0.56701	(0.53,0.59]	chr16	1271456	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.30776	4.43025	4.55274	0.00407289	0.00167999	0.0324137	0.0164993
chr16	74628594	74628666	16032657	0	-	0.583333	(0.53,0.59]	chr16	1287421	3	CDS	CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.30776	4.43025	4.55274	0.00407289	0.00167999	0.0324137	0.0164993
chr19	1031131	1031192	17190768	0	+	0.590164	(0.59,1]	chr19	1411377	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	CNN2	ENSG00000064666.15	ENST00000562015.5:ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6:ENST00000566695.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	4.11672	4.43025	4.74378	0.0222273	0.00312942	0.105595	0.0264364
chr19	54982356	54982454	17394561	0	+	0.540816	(0.53,0.59]	chr19	1448281	3	CDS	CDS:EXON_MRNA	NLRP2	ENSG00000022556.16	ENST00000543010.5:ENST00000540597.5:ENST00000391721.8:ENST00000339757.11:ENST00000537859.5:ENST00000448584.7:ENST00000427260.6:ENST00000263437.10:ENST00000397169.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.30776	4.43025	4.55274	0.00407289	0.00167999	0.0324137	0.0164993
chr2	131626321	131626417	2068928	0	+	0.53125	(0.53,0.59]	chr2	194536	5	EXON_PSEUDO	EXON_PSEUDO	POTEKP	ENSG00000204434.6	ENST00000397487.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	22	2	4.30776	4.43025	4.55274	0.00407289	0.00167999	0.0324137	0.0164993
chr22	50506123	50506213	18547933	0	-	0.688889	(0.59,1]	chr22	1585022	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMF2	ENSG00000100258.18	ENST00000474879.7:ENST00000216080.5:ENST00000514938.1:ENST00000505981.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	28	2	4.11672	4.43025	4.74378	0.0222273	0.00312942	0.105595	0.0264364
chrX	316325	316413	18924692	0	-	0.556818	(0.53,0.59]	chrX	1612796	7	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.30776	4.43025	4.55274	0.00407289	0.00167999	0.0324137	0.0164993
chr9	127451317	127451406	10860013	0	-	0.651685	(0.59,1]	chr9	822673	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	1079	2	4.10628	4.42997	4.75366	1.58866e-9	4.16212e-12	1.71576e-7	8.01373e-10
chrX	55015577	55015659	19084621	0	-	0.52439	(0.49,0.53]	chrX	1623747	1	CDS	CDS:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	2.63283	4.429745	6.22666	5.45228e-5	5.03459e-8	0.00110715	3.41647e-6
chr1	52393622	52393712	1018904	0	-	0.477778	(0.455,0.49]	chr1	105620	3	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.69053	4.429505	6.16848	0.0182983	8.97995e-8	0.0925808	5.08654e-6
chr12	113390757	113390854	13101762	0	+	0.474227	(0.455,0.49]	chr12	1022448	23	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	10	181	2	3.53906	4.42917	5.31928	2.66497e-8	1.21866e-11	1.97197e-6	2.06894e-9
chr15	40038281	40038337	15230371	0	-	0.464286	(0.455,0.49]	chr15	1198286	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SRP14	ENSG00000140319.11	ENST00000267884.11:ENST00000558527.5:ENST00000558720.5:ENST00000560773.5:ENST00000559439.5:ENST00000559475.5:ENST00000559081.1:ENST00000558243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	4.22226	4.429165	4.63607	1.23185e-5	6.94376e-7	3.58356e-4	2.92826e-5
chr2	58252327	58252426	1830053	0	+	0.50505	(0.49,0.53]	chr2	174311	10	EXON_PSEUDO	EXON_PSEUDO	EIF3FP3	ENSG00000233426.3	ENST00000434851.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	39	2	4.17834	4.42903	4.67972	6.94757e-4	1.74561e-5	0.00876781	4.38078e-4
chr15	74417590	74417645	15374512	0	-	0.581818	(0.53,0.59]	chr15	1215187	1	CDS_START	CDS_START:CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.02054	4.4289250000000004	5.8373100000000004	0.00577011	2.06883e-6	0.0426551	7.35008e-5
chr17	656792	656882	16393015	0	-	0.555556	(0.53,0.59]	chr17	1333732	1	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	VPS53:RPS4XP17	ENSG00000141252.21:ENSG00000244097.1	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1:ENST00000479057.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	43	2	3.02054	4.4289250000000004	5.8373100000000004	0.00577011	2.06883e-6	0.0426551	7.35008e-5
chr1	149832840	149832896	464747	0	+	0.589286	(0.53,0.59]	chr1	46790	2	CDS	CDS:EXON_MRNA	H4C14	ENSG00000270882.2	ENST00000578186.2:ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	203	2	3.7639	4.428915	5.09393	2.7551e-7	8.7601e-12	1.3291e-5	1.69421e-9
chr19	10287210	10287308	17224662	0	+	0.632653	(0.59,1]	chr19	1418513	2	CDS	CDS:EXON_MRNA	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	3.09997	4.4288050000000005	5.75764	2.20596e-4	4.53637e-5	0.00367555	9.4617e-4
chrX	154435736	154435791	18917917	0	+	0.6	(0.59,1]	chrX	1611927	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	151	2	4.22541	4.42861	4.63181	4.23414e-6	1.49993e-6	1.4819e-4	5.63415e-5
chr2	86776563	86776661	1928621	0	+	0.5	(0.49,0.53]	chr2	181779	33	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.60116	4.428585	6.25601	0.0056515	5.54522e-8	0.0422191	3.37102e-6
chr5	176389585	176389673	6401942	0	+	0.454545	(0.42,0.455]	chr5	497305	2	UTR3	UTR3:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	3.95538	4.428535	4.90169	6.68846e-5	8.58947e-10	0.00142352	9.18392e-8
chr2	61878939	61879011	2691442	0	-	0.444444	(0.42,0.455]	chr2	240571	2	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	3.02455	4.4284550000000005	5.83236	5.96517e-5	5.6476e-7	0.00119544	2.73442e-5
chr15	65877821	65877882	14982223	0	+	0.377049	(0.36,0.39]	chr15	1177729	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	4.26916	4.428315	4.58747	6.55819e-4	9.09682e-6	0.00860229	2.53877e-4
chr2	47280684	47280784	2632516	0	-	0.41	(0.39,0.42]	chr2	236988	590	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000658129.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	3.9641	4.42814	4.89218	1.6518e-4	6.346e-5	0.0029267300000000002	0.00124725
chr11	315110	315208	11756479	0	+	0.642857	(0.59,1]	chr11	897776	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000528780.5:ENST00000328221.5:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	644	2	4.06252	4.427595	4.79267	1.3349e-9	9.48231e-10	1.35621e-7	1.09184e-7
chr14	52663780	52663847	14630281	0	-	0.358209	(0.33,0.36]	chr14	1146005	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000554019.5:ENST00000556039.5:ENST00000556769.1:ENST00000629528.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	4.1284	4.4271899999999995	4.72598	0.00407303	3.063e-7	0.0324137	1.45748e-5
chr3	195781370	195781469	4661080	0	-	0.565657	(0.53,0.59]	chr3	385270	27	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	3.21941	4.427075	5.63474	0.00266171	7.53339e-6	0.0240332	2.17987e-4
chr11	61806663	61806724	12405978	0	-	0.377049	(0.36,0.39]	chr11	960606	1	CDS	CDS:EXON_MRNA:INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	315	2	4.05522	4.427035	4.79885	4.27841e-11	1e-12	7.01331e-9	2.25522e-10
chr11	125629231	125629296	12194642	0	+	0.523077	(0.49,0.53]	chr11	940835	1	CDS	CDS:UTR3:EXON_MRNA	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000525396.5:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532669.5:ENST00000527013.6:ENST00000526937.5:ENST00000534685.5:ENST00000532449.6:ENST00000531062.2:ENST00000534070.5:ENST00000524737.6:ENST00000531607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.73494	4.42681	5.11868	0.0189345	9.66505e-5	0.0934721	0.00175267
chr12	128814872	128814971	13607751	0	-	0.525253	(0.49,0.53]	chr12	1072400	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC15A4	ENSG00000139370.12	ENST00000266771.10:ENST00000376744.8:ENST00000366292.6:ENST00000376740.8:ENST00000539703.1:ENST00000535272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.73494	4.42681	5.11868	0.0189345	9.66505e-5	0.0934721	0.00175267
chr8	80559066	80559165	9427547	0	+	0.50505	(0.49,0.53]	chr8	719144	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP47	ENSG00000188856.6	ENST00000479228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	23	2	3.73494	4.42681	5.11868	0.0189345	9.66505e-5	0.0934721	0.00175267
chr10	69401415	69401509	11096854	0	+	0.457447	(0.455,0.49]	chr10	843823	4	UTR3	UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	145	2	3.92225	4.42667	4.93109	1.19744e-8	6.13286e-10	9.91331e-7	6.78176e-8
chr2	8683684	8683781	1623464	0	+	0.319588	(0.29,0.33]	chr2	161001	1	UTR3	UTR3:EXON_MRNA	ID2	ENSG00000115738.10	ENST00000234091.8:ENST00000396290.2:ENST00000472142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.90323	4.42664	4.95005	9.78718e-5	9.15815e-5	0.0019344	0.00168607
chr1	40268476	40268535	152978	0	+	0.338983	(0.33,0.36]	chr1	19151	2	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.33896	4.42637	4.51378	0.00182033	0.00118147	0.0183913	0.0127276
chr17	2185070	2185169	16404708	0	-	0.353535	(0.33,0.36]	chr17	1335209	119	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000572369.5:ENST00000575176.5:ENST00000572205.5:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.33896	4.42637	4.51378	0.00182033	0.00118147	0.0183913	0.0127276
chrX	120257508	120257607	18844034	0	+	0.343434	(0.33,0.36]	chrX	1605768	22	UTR3	UTR3:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.33896	4.42637	4.51378	0.00182033	0.00118147	0.0183913	0.0127276
chr16	89304210	89304309	16077348	0	-	0.616162	(0.59,1]	chr16	1292159	22	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	3.71566	4.4262250000000005	5.13679	0.0487443	9.28022e-4	0.175495	0.0111748
chrX	154010591	154010678	19275845	0	-	0.494253	(0.49,0.53]	chrX	1637992	2	UTR3	UTR3:EXON_MRNA	IRAK1	ENSG00000184216.14	ENST00000369974.6:ENST00000369980.8:ENST00000444230.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.60653	4.42616	5.24579	4.50981e-4	4.073e-5	0.00605268	9.64741e-4
chrX	154432265	154432362	18917871	0	+	0.618557	(0.59,1]	chrX	1611898	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	150	2	4.13758	4.42612	4.71466	2.62983e-6	2.5815e-6	9.80732e-5	9.04922e-5
chr1	38863877	38863976	951531	0	-	0.424242	(0.42,0.455]	chr1	100303	15	UTR3	UTR3:EXON_MRNA:INTRON	RP5-864K19.7:MYCBP	ENSG00000273637.1:ENSG00000214114.9	ENST00000622355.1:ENST00000397572.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	34	2	3.4231	4.425895	5.42869	0.00112541	1.60756e-5	0.0128481	4.07445e-4
chr1	43364541	43364594	968548	0	-	0.622642	(0.59,1]	chr1	102056	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	58	2	3.0542	4.42587	5.79754	0.00663549	3.712e-5	0.0456243	8.06532e-4
chr3	45225029	45225124	4150471	0	-	0.694737	(0.59,1]	chr3	346803	7	UTR3	UTR3:EXON_MRNA	TMEM158	ENSG00000249992.2	ENST00000503771.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.0542	4.42587	5.79754	0.00663549	3.712e-5	0.0456243	8.06532e-4
chr1	154260891	154260963	480053	0	+	0.666667	(0.59,1]	chr1	49713	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1:ENST00000475373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.65509	4.425785	5.19648	7.35336e-4	5.95213e-4	0.00921643	0.00746384
chr11	4122140	4122220	11774304	0	+	0.45	(0.42,0.455]	chr11	901009	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5:ENST00000526304.5:ENST00000528470.5:ENST00000531591.5:ENST00000529109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.47379	4.42564	6.37749	0.00996858	1.88677e-8	0.0621728	1.34393e-6
chr19	8321530	8321569	17219820	0	+	0.615385	(0.59,1]	chr19	1417485	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	249	2	3.15199	4.425415	5.69884	1.51584e-5	2.37252e-9	4.25562e-4	2.2365e-7
chr1	54212500	54212579	200430	0	+	0.506329	(0.49,0.53]	chr1	25599	1	CDS	CDS:EXON_MRNA	MRPL37	ENSG00000116221.15	ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000398219.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	3.3222	4.425285	5.52837	2.96558e-5	7.50805e-6	6.71364e-4	2.3779e-4
chr2	61214603	61214694	2687662	0	-	0.483516	(0.455,0.49]	chr2	239963	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000467128.5:ENST00000472689.5:ENST00000472706.5:ENST00000490527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	77	2	4.21963	4.42507	4.63051	6.5205e-7	3.43063e-7	3.08344e-5	1.6072e-5
chr6	27810313	27810384	7105136	0	+	0.661972	(0.59,1]	chr6	543456	3	CDS	CDS:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	3	150	2	3.98278	4.42495	4.86712	8.2153e-6	7.89754e-7	2.56136e-4	3.26923e-5
chr17	43002672	43002714	16230918	0	+	0.428571	(0.42,0.455]	chr17	1313745	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	170	2	4.07849	4.42494	4.77139	8.18616e-8	1.47089e-11	5.23056e-6	2.46005e-9
chr7	100091237	100091330	8425358	0	+	0.569892	(0.53,0.59]	chr7	642468	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000468499.5:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.98115	4.42469	4.86823	4.35895e-4	6.28226e-5	0.00623608	0.00124286
chr12	110326389	110326475	13085695	0	+	0.465116	(0.455,0.49]	chr12	1020491	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	92	2	3.55739	4.4246099999999995	5.29183	5.77513e-6	2.89856e-9	1.9135e-4	2.64796e-7
chr10	110937145	110937233	11692545	0	-	0.625	(0.59,1]	chr10	891865	7	EXON_PSEUDO	EXON_PSEUDO	RPL13AP6	ENSG00000234118.1	ENST00000430133.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	75	2	2.93771	4.424365	5.91102	0.00168288	2.06903e-5	0.0175167	4.99825e-4
chr19	15829248	15829338	17246525	0	+	0.566667	(0.53,0.59]	chr19	1422743	9	EXON_LNCRNA	EXON_LNCRNA	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1	lncRNA	lncRNA	lncRNA	lncRNA	4	121	2	4.22797	4.424345000000001	4.62072	3.82298e-7	1.55043e-8	1.97311e-5	1.13092e-6
chrX	9569240	9569340	18567789	0	+	0.49	(0.455,0.49]	chrX	1586476	83	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	4.33565	4.42398	4.51231	5.69287e-6	1.73754e-6	1.88744e-4	6.36428e-5
chr12	54351373	54351468	12892168	0	+	0.568421	(0.53,0.59]	chr12	1003028	10	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000262061.7	protein_coding	protein_coding	protein_coding	protein_coding	6	162	2	4.09602	4.42394	4.75186	1.62316e-8	4.80296e-9	1.17683e-6	4.45871e-7
chr1	183549843	183549923	597987	0	+	0.525	(0.49,0.53]	chr1	62120	2	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000493045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.76703	4.42382	5.08061	1.00361e-4	1.02216e-5	0.00196575	2.82175e-4
chr21	34096374	34096472	18104980	0	+	0.469388	(0.455,0.49]	chr21	1534981	12	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	105	2	3.899	4.4236699999999995	4.94834	7.01497e-8	4.87872e-8	4.1202e-6	3.33126e-6
chr19	39306759	39306856	17562836	0	-	0.525773	(0.49,0.53]	chr19	1475511	3	UTR3	UTR3:EXON_MRNA	LRFN1	ENSG00000128011.5	ENST00000248668.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.78794	4.42354	6.05914	0.00251838	1.86307e-7	0.0226599	1.07114e-5
chr8	96785246	96785330	9501907	0	+	0.5	(0.49,0.53]	chr8	722596	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1:ENST00000525310.1:ENST00000519484.1:ENST00000521142.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	4.09049	4.423475	4.75646	2.9452e-5	3.50447e-9	7.32348e-4	3.13339e-7
chr16	21976166	21976243	15586957	0	+	0.402597	(0.39,0.42]	chr16	1235476	1	CDS	CDS:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	177	2	4.03491	4.42315	4.81139	1.51324e-6	1.35802e-12	6.2379e-5	2.95749e-10
chr11	78069986	78070036	12477545	0	-	0.26	[0,0.29]	chr11	970652	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.92298	4.423095	4.92321	1.17014e-4	3.46289e-6	0.00222617	1.13643e-4
chr21	45531483	45531578	18279226	0	-	0.694737	(0.59,1]	chr21	1550611	2	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.61074	4.423085	6.23543	0.025486	3.47367e-6	0.117089	1.13687e-4
chr11	7987540	7987628	11789413	0	+	0.75	(0.59,1]	chr11	902500	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	235	2	3.85734	4.42308	4.98882	4.68616e-7	2.24302e-7	2.33328e-5	1.11841e-5
chr19	36149839	36149906	17308840	0	+	0.656716	(0.59,1]	chr19	1432255	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	5	114	2	2.34517	4.42264	6.50011	0.00195516	7.17564e-7	0.0193972	3.01149e-5
chr7	103519419	103519516	8963445	0	-	0.391753	(0.39,0.42]	chr7	686130	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.19588	4.42253	5.64918	0.00321212	3.47137e-6	0.0280721	1.13687e-4
chr8	18071351	18071390	9732963	0	-	0.435897	(0.42,0.455]	chr8	736330	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1:ENST00000637792.1:ENST00000637898.1:ENST00000637536.1:ENST00000637946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	4.40276	4.422129999999999	4.4415	0.0017618	2.94164e-6	0.0180053	9.91141e-5
chr11	69064954	69065052	12001879	0	+	0.520408	(0.49,0.53]	chr11	924113	6	INTRON	INTRON	TPCN2	ENSG00000162341.18	ENST00000637504.1:ENST00000294309.8:ENST00000635811.1:ENST00000535009.5:ENST00000542467.1:ENST00000637342.1:ENST00000442692.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.44951	4.421749999999999	5.39399	0.0405223	1.71804e-5	0.153343	4.72485e-4
chr10	5785851	5785950	11352658	0	-	0.363636	(0.36,0.39]	chr10	865759	1	CDS	CDS:EXON_MRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5	protein_coding	protein_coding	protein_coding	protein_coding	6	113	2	3.90933	4.42174	4.93415	6.61792e-8	5.04486e-10	4.34141e-6	5.72564e-8
chrX	136936049	136936148	18871076	0	+	0.585859	(0.53,0.59]	chrX	1608565	103	INTRON	INTRON	RP11-308D16.2	ENSG00000234062.8	ENST00000650669.1:ENST00000424306.5:ENST00000431464.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	147	2	4.37211	4.421670000000001	4.47123	5.43864e-6	5.06926e-10	1.81467e-4	5.74585e-8
chr3	14466515	14466582	3320634	0	+	0.597015	(0.59,1]	chr3	292239	1	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	233	2	3.62036	4.421305	5.22225	5.6143e-5	1.91809e-9	0.00113339	2.01325e-7
chr1	160289960	160290058	1328666	0	-	0.387755	(0.36,0.39]	chr1	135960	15	UTR3	UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	162	2	3.85134	4.421175	4.99101	7.01261e-7	1e-12	3.29378e-5	2.25522e-10
chr1	52772557	52772648	1020669	0	-	0.56044	(0.53,0.59]	chr1	105869	5	EXON_PSEUDO	EXON_PSEUDO	RPS13P2	ENSG00000228929.1	ENST00000437890.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	135	2	3.70393	4.42106	5.13819	1.64739e-5	1.38627e-10	4.57148e-4	1.80937e-8
chr12	120914670	120914761	13117869	0	+	0.494505	(0.49,0.53]	chr12	1024087	4	EXON_PSEUDO	EXON_PSEUDO	CLIC1P1	ENSG00000231313.2	ENST00000431907.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	114	2	3.85244	4.420885	4.98933	5.52735e-6	3.87256e-10	1.83781e-4	4.52619e-8
chr2	61872159	61872237	2691364	0	-	0.487179	(0.455,0.49]	chr2	240539	2	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	136	2	3.67854	4.420845	5.16315	4.4299e-7	6.11134e-11	2.22318e-5	8.78146e-9
chr18	31546550	31546643	16809165	0	+	0.548387	(0.53,0.59]	chr18	1386480	10	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	4.40251	4.42057	4.43863	0.00254763	4.48447e-6	0.0233955	1.41623e-4
chr1	32030359	32030422	125725	0	+	0.412698	(0.39,0.42]	chr1	15424	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.44923	4.420555	5.39188	0.00105208	1.75441e-5	0.0123035	4.38078e-4
chr1	108939708	108939782	1217955	0	-	0.405405	(0.39,0.42]	chr1	118644	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6:ENST00000676391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	3.44923	4.420555	5.39188	0.00105208	1.75441e-5	0.0123035	4.38078e-4
chr10	73773457	73773546	11115907	0	+	0.393258	(0.39,0.42]	chr10	845940	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUT11	ENSG00000196968.11	ENST00000372841.8:ENST00000394790.2:ENST00000465695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.44923	4.420555	5.39188	0.00105208	1.75441e-5	0.0123035	4.38078e-4
chr17	14208485	14208583	16134801	0	+	0.418367	(0.39,0.42]	chr17	1300108	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COX10	ENSG00000006695.12	ENST00000664217.1:ENST00000670279.1:ENST00000261643.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.44923	4.420555	5.39188	0.00105208	1.75441e-5	0.0123035	4.38078e-4
chr1	91727732	91727806	1164452	0	-	0.378378	(0.36,0.39]	chr1	114942	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000529608.1:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr10	67990305	67990400	11555879	0	-	0.389474	(0.36,0.39]	chr10	878903	2	CDS	CDS:UTR3:EXON_MRNA	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr14	45090675	45090774	14267795	0	+	0.373737	(0.36,0.39]	chr14	1115507	25	INTRON	INTRON	PRPF39	ENSG00000185246.18	ENST00000553605.1:ENST00000355765.11:ENST00000477626.5:ENST00000556782.5:ENST00000424478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr17	30465577	30465673	16186722	0	+	0.375	(0.36,0.39]	chr17	1306518	9	UTR3	UTR3:EXON_MRNA:INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000584221.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr2	210431346	210431444	3145305	0	-	0.367347	(0.36,0.39]	chr2	277990	2	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr21	32274829	32274896	18213105	0	-	0.38806	(0.36,0.39]	chr21	1545428	1	CDS	CDS:EXON_MRNA	MIS18A	ENSG00000159055.4	ENST00000290130.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr3	100297922	100297983	3634520	0	+	0.377049	(0.36,0.39]	chr3	311522	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.24194	4.42032	4.5987	0.00276729	9.0208e-4	0.0247437	0.0102618
chr7	90413311	90413411	8384978	0	+	0.47	(0.455,0.49]	chr7	638937	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	CLDN12:CTB-13L3.1	ENSG00000157224.16:ENSG00000273299.1	ENST00000287916.8:ENST00000480135.1:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000451941.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	34	2	3.46389	4.41999	5.37609	9.14164e-4	2.05373e-5	0.0110519	4.97369e-4
chr16	11351372	11351469	15543389	0	+	0.412371	(0.39,0.42]	chr16	1231099	7	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.76141	4.419965	5.07852	2.14058e-4	1.02164e-4	0.00359478	0.00183311
chr6	149790005	149790058	7481915	0	+	0.433962	(0.42,0.455]	chr6	571780	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	163	2	3.50825	4.41996	5.33167	5.86898e-5	1e-12	0.00129243	2.25522e-10
chr1	156130694	156130773	486072	0	+	0.670886	(0.59,1]	chr1	51263	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.89841	4.419855	4.9413	0.00191468	1.91539e-4	0.0190905	0.00304814
chr2	170965789	170965869	2206505	0	+	0.6125	(0.59,1]	chr2	201861	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.89841	4.419855	4.9413	0.00191468	1.91539e-4	0.0190905	0.00304814
chr11	60070331	60070429	11961715	0	+	0.397959	(0.39,0.42]	chr11	915694	2	UTR3	UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	113	2	3.82233	4.419445	5.01656	7.89457e-7	2.51498e-10	3.62648e-5	3.07762e-8
chr9	35065314	35065381	10638167	0	-	0.492537	(0.49,0.53]	chr9	804551	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680520.1:ENST00000681789.1:ENST00000680731.1:ENST00000681562.1:ENST00000681845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.84832	4.41933	4.99034	1.6002e-4	5.8066e-6	0.00286408	1.75335e-4
chr19	40367786	40367879	17328624	0	+	0.645161	(0.59,1]	chr19	1435551	3	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000392032.6:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000409281.5:ENST00000359274.5:ENST00000485448.1:ENST00000492243.1:ENST00000599353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	113	2	4.31663	4.418855000000001	4.52108	2.15624e-5	8.07535e-6	5.14797e-4	2.52239e-4
chrX	23837224	23837321	19005200	0	-	0.463918	(0.455,0.49]	chrX	1617169	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	APOO:RPL9P7	ENSG00000184831.14:ENSG00000238103.4	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1:ENST00000330965.4	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	13	302	2	3.7357	4.41819	5.10068	8.58912e-9	1e-12	7.41337e-7	2.25522e-10
chr11	130144518	130144616	12207141	0	+	0.367347	(0.36,0.39]	chr11	942093	12	UTR3	UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000338167.10:ENST00000263574.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	3.77672	4.41793	5.05914	1.05661e-6	1.67859e-8	4.18995e-5	1.32456e-6
chr17	48895238	48895338	16255801	0	+	0.54	(0.53,0.59]	chr17	1317516	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5MC1	ENSG00000159199.14	ENST00000355938.9:ENST00000513347.1:ENST00000393366.7:ENST00000503641.5:ENST00000514808.5:ENST00000506855.1:ENST00000513781.5:ENST00000504591.2:ENST00000502964.5:ENST00000515060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	89	2	1.84678	4.41768	6.98858	0.0134899	2.3048e-10	0.0745701	3.16302e-8
chr1	149887719	149887816	1287114	0	-	0.680412	(0.59,1]	chr1	127858	2	CDS	CDS:EXON_MRNA	H2AC21	ENSG00000184270.6	ENST00000331128.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.39292	4.4176400000000005	5.44236	0.00192565	2.02004e-4	0.0191769	0.00317801
chr1	11963531	11963583	45379	0	+	0.615385	(0.59,1]	chr1	5767	1	CDS	CDS:EXON_MRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.19	4.417575	5.64515	0.0039188	1.07144e-4	0.0314356	0.00206452
chrX	48459587	48459639	19062739	0	-	0.596154	(0.59,1]	chrX	1620380	2	CDS	CDS:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4:ENST00000480105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.19	4.417575	5.64515	0.0039188	1.07144e-4	0.0314356	0.00206452
chr3	151188016	151188098	3812720	0	+	0.317073	(0.29,0.33]	chr3	325259	3	SS3_PROX	SS3_PROX:INTRON	MED12L	ENSG00000144893.12	ENST00000422248.6:ENST00000309237.8:ENST00000474524.5:ENST00000273432.8	protein_coding	protein_coding	protein_coding	protein_coding	7	112	2	3.94816	4.41757	4.88698	2.57518e-7	2.0407e-12	1.25763e-5	4.60808e-10
chr11	16754939	16755004	11825836	0	+	0.415385	(0.39,0.42]	chr11	905234	2	CDS	CDS:UTR3:EXON_MRNA	C11orf58	ENSG00000110696.10	ENST00000228136.9:ENST00000525684.1:ENST00000528634.5:ENST00000524461.1:ENST00000531658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.82973	4.41682	5.00391	1.3728e-4	9.12714e-5	0.00232973	0.00182992
chr7	50334341	50334441	8278463	0	+	0.41	(0.39,0.42]	chr7	630699	55	INTRON	INTRON	IKZF1	ENSG00000185811.19	ENST00000642219.1:ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000612658.4:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.82973	4.41682	5.00391	1.3728e-4	9.12714e-5	0.00232973	0.00182992
chr17	7586957	7587017	16105789	0	+	0.633333	(0.59,1]	chr17	1297027	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000585188.5:ENST00000578267.5:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000584479.5:ENST00000576066.5:ENST00000579445.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000581380.1:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.34171	4.4167749999999995	5.49184	0.00234977	1.61513e-4	0.0222173	0.00265627
chr3	150458935	150459035	3807492	0	+	0.38	(0.36,0.39]	chr3	324963	4	UTR3	UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000466814.1:ENST00000460316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.20198	4.416705	5.63143	4.4092e-4	3.24005e-6	0.0062930699999999996	1.07746e-4
chr2	121686502	121686602	2033935	0	+	0.53	(0.49,0.53]	chr2	192203	336	INTRON	INTRON	NIFK-AS1	ENSG00000236859.7	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	26	737	2	3.36719	4.41639	5.46559	1.32123e-8	1e-12	1.07843e-6	2.25522e-10
chr2	9271543	9271628	2507216	0	-	0.482353	(0.455,0.49]	chr2	226164	4	EXON_PSEUDO	EXON_PSEUDO	EIF1P7	ENSG00000213772.3	ENST00000487533.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	59	2	3.67042	4.416285	5.16215	5.04348e-5	2.46218e-6	0.00113788	8.56868e-5
chr1	111161225	111161296	405976	0	+	0.422535	(0.42,0.455]	chr1	39881	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.99666	4.415995	5.83533	0.00104775	1.15767e-6	0.0123035	4.52486e-5
chr5	31456438	31456538	6516477	0	-	0.4	(0.39,0.42]	chr5	504642	44	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000505601.5:ENST00000507174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	3.93975	4.415965	4.89218	0.0105893	1.6518e-4	0.0644466	0.0029267300000000002
chr1	31364770	31364861	123988	0	+	0.417582	(0.39,0.42]	chr1	15086	7	UTR3	UTR3:EXON_MRNA	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000373714.5:ENST00000344147.10	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.93996	4.41596	4.89196	0.00841622	2.62166e-4	0.054565	0.0039188
chr11	45933670	45933769	12378796	0	-	0.40404	(0.39,0.42]	chr11	955585	45	UTR3	UTR3:EXON_MRNA	PHF21A	ENSG00000135365.16	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000530587.5:ENST00000418153.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.93996	4.41596	4.89196	0.00841622	2.62166e-4	0.054565	0.0039188
chr15	63588758	63588815	14973945	0	+	0.403509	(0.39,0.42]	chr15	1176958	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5:ENST00000558218.5:ENST00000561381.5:ENST00000559718.1:ENST00000560202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.93996	4.41596	4.89196	0.00841622	2.62166e-4	0.054565	0.0039188
chr3	161233398	161233479	3857743	0	+	0.407407	(0.39,0.42]	chr3	327605	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1:ENST00000478160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.93996	4.41596	4.89196	0.00841622	2.62166e-4	0.054565	0.0039188
chr17	63589466	63589564	16317548	0	+	0.540816	(0.53,0.59]	chr17	1323671	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	299	2	3.86655	4.415900000000001	4.96525	2.09922e-9	3.45668e-12	2.01758e-7	7.36742e-10
chr11	61302256	61302307	12403906	0	-	0.431373	(0.42,0.455]	chr11	960178	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2:ENST00000679855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.46349	4.415865	5.36824	9.0025e-4	1.33083e-5	0.0102618	3.81624e-4
chr20	35653255	35653346	17954990	0	-	0.626374	(0.59,1]	chr20	1521107	8	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.06258	4.415425	5.76827	0.00616167	5.97759e-5	0.0438642	0.00130766
chr17	76563505	76563602	16359184	0	+	0.43299	(0.42,0.455]	chr17	1328581	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	3	74	2	4.22173	4.415345	4.60896	8.72604e-7	3.16136e-7	3.55816e-5	1.68021e-5
chr10	119169259	119169342	11717957	0	-	0.493976	(0.49,0.53]	chr10	893958	2	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	4.28332	4.415	4.54668	0.00338762	1.40979e-6	0.0288632	5.33111e-5
chr2	110655738	110655827	2838100	0	-	0.47191	(0.455,0.49]	chr2	253324	1	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	4.15477	4.414525	4.67428	5.75142e-7	4.63488e-7	2.49635e-5	2.31256e-5
chr1	201969831	201969924	661851	0	+	0.376344	(0.36,0.39]	chr1	66404	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.02397	4.414455	5.80494	0.00674398	9.78955e-7	0.0461258	3.91899e-5
chr10	119069514	119069584	11717549	0	-	0.342857	(0.33,0.36]	chr10	893844	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.97592	4.41441	5.8529	4.1482e-4	5.58947e-7	0.00607555	2.43789e-5
chr14	75147663	75147737	14709208	0	-	0.5	(0.49,0.53]	chr14	1152547	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1:ENST00000555873.1:ENST00000555085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	3.33324	4.414065	5.49489	0.00162947	4.93197e-10	0.0169972	5.61212e-8
chr10	123162324	123162413	11299041	0	+	0.337079	(0.33,0.36]	chr10	861578	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2:ENST00000481952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	175	2	4.17818	4.413975000000001	4.64977	9.94502e-10	5.62073e-12	1.13759e-7	1.04529e-9
chr14	76635069	76635168	14712541	0	-	0.555556	(0.53,0.59]	chr14	1152724	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-187O7.3:RPSAP3	ENSG00000259124.1:ENSG00000242952.1	ENST00000554926.1:ENST00000464073.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:transcribed_processed_pseudogene	0	22	2	4.15805	4.413705	4.66936	0.00680952	0.00103174	0.0468196	0.0121443
chr16	5075387	5075486	15504811	0	+	0.555556	(0.53,0.59]	chr16	1229623	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALG1	ENSG00000033011.14	ENST00000682327.1:ENST00000650085.1:ENST00000682020.1:ENST00000682985.1:ENST00000683433.1:ENST00000588623.5:ENST00000682206.1:ENST00000682797.1:ENST00000684190.1:ENST00000684335.1:ENST00000683772.1:ENST00000682314.1:ENST00000683685.1:ENST00000586840.1:ENST00000683710.1:ENST00000262374.10:ENST00000682349.1:ENST00000592793.6:ENST00000682703.1:ENST00000591822.5:ENST00000684008.1:ENST00000591783.5:ENST00000544428.1:ENST00000683739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.15805	4.413705	4.66936	0.00680952	0.00103174	0.0468196	0.0121443
chr2	240021202	240021302	3245993	0	-	0.54	(0.53,0.59]	chr2	286083	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1:ENST00000407129.3:ENST00000497536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.15805	4.413705	4.66936	0.00680952	0.00103174	0.0468196	0.0121443
chr1	9729320	9729419	854601	0	-	0.555556	(0.53,0.59]	chr1	86233	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr12	56138403	56138499	12898368	0	+	0.583333	(0.53,0.59]	chr12	1004286	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000547667.5:ENST00000550878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr14	22768125	22768171	14174745	0	+	0.565217	(0.53,0.59]	chr14	1110315	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000483939.6:ENST00000612549.6:ENST00000473744.5:ENST00000442110.6:ENST00000431881.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000556473.1:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr14	67690409	67690421	14683480	0	-	0.583333	(0.53,0.59]	chr14	1149646	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr2	74418121	74418194	2742648	0	-	0.547945	(0.53,0.59]	chr2	244334	1	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	RP11-523H20.5:C2orf81:HMGA1P8	ENSG00000159239.13:ENSG00000284308.2:ENSG00000233155.1	ENST00000517883.2:ENST00000612891.4:ENST00000684111.1:ENST00000640331.1:ENST00000638555.1:ENST00000414130.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr2	131626993	131627090	2068935	0	+	0.56701	(0.53,0.59]	chr2	194536	12	EXON_PSEUDO	EXON_PSEUDO	POTEKP	ENSG00000204434.6	ENST00000397487.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr3	195780576	195780675	4661072	0	-	0.575758	(0.53,0.59]	chr3	385270	19	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr7	45101314	45101372	8800975	0	-	0.568965	(0.53,0.59]	chr7	671530	2	CDS	CDS:EXON_MRNA	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr7	128570508	128570598	9059377	0	-	0.533333	(0.53,0.59]	chr7	691466	4	EXON_PSEUDO	EXON_PSEUDO	RP11-212P7.1	ENSG00000213280.2	ENST00000393266.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr7	128837397	128837472	8522308	0	+	0.546667	(0.53,0.59]	chr7	650318	1	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chrX	71240915	71241015	19106942	0	-	0.57	(0.53,0.59]	chrX	1625382	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chrX	154536140	154536178	19278740	0	-	0.552632	(0.53,0.59]	chrX	1638574	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000433845.1:ENST00000497281.5:ENST00000488434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	4.16383	4.413655	4.66348	0.00659193	0.00107799	0.0454205	0.0118238
chr1	11966250	11966316	45413	0	+	0.560606	(0.53,0.59]	chr1	5787	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000470133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	75	2	3.35943	4.413525	5.46762	1.97761e-5	6.21512e-6	5.29643e-4	1.85773e-4
chr1	52020575	52020664	1018057	0	-	0.41573	(0.39,0.42]	chr1	105390	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.14886	4.4132549999999995	4.67765	0.00415881	7.04737e-4	0.0325842	0.00848325
chr17	59267040	59267107	16293539	0	+	0.402985	(0.39,0.42]	chr17	1321439	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	GDPD1	ENSG00000153982.11	ENST00000578026.5:ENST00000284116.9:ENST00000581140.5:ENST00000579020.5:ENST00000581276.5:ENST00000579076.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.14886	4.4132549999999995	4.67765	0.00415881	7.04737e-4	0.0325842	0.00848325
chr3	9977388	9977446	4031319	0	-	0.413793	(0.39,0.42]	chr3	338410	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1:ENST00000429759.5:ENST00000470827.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.14886	4.4132549999999995	4.67765	0.00415881	7.04737e-4	0.0325842	0.00848325
chr3	180970291	180970358	3933680	0	+	0.402985	(0.39,0.42]	chr3	330736	3	CDS	CDS:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000476672.1:ENST00000482125.1:ENST00000481383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.14886	4.4132549999999995	4.67765	0.00415881	7.04737e-4	0.0325842	0.00848325
chr7	12233374	12233473	8134855	0	+	0.393939	(0.39,0.42]	chr7	621602	15	UTR3	UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000396668.8:ENST00000396667.7	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.14886	4.4132549999999995	4.67765	0.00415881	7.04737e-4	0.0325842	0.00848325
chr9	100041619	100041719	10773133	0	-	0.42	(0.39,0.42]	chr9	815466	190	INTRON	INTRON	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.14886	4.4132549999999995	4.67765	0.00415881	7.04737e-4	0.0325842	0.00848325
chr1	152033647	152033723	1295124	0	-	0.421053	(0.42,0.455]	chr1	129734	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.17433	4.41286	5.65139	3.82052e-4	2.06893e-6	0.0052929	8.11386e-5
chr13	99555591	99555647	13865582	0	+	0.375	(0.36,0.39]	chr13	1087225	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	4.32265	4.412855	4.50306	6.3224e-6	1.8245e-6	1.88366e-4	7.35552e-5
chr1	21833267	21833325	890725	0	-	0.551724	(0.53,0.59]	chr1	92266	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	4.08599	4.4125049999999995	4.73902	3.38473e-5	3.99607e-7	7.45971e-4	2.04183e-5
chr2	219224198	219224292	3191330	0	-	0.531915	(0.53,0.59]	chr2	280883	2	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	4.09676	4.41249	4.72822	3.14727e-5	4.40858e-7	7.72298e-4	1.99026e-5
chr1	22086781	22086881	93030	0	+	0.5	(0.49,0.53]	chr1	10791	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	126	2	3.8901	4.41232	4.93454	4.29603e-7	6.56872e-10	2.16745e-5	7.19532e-8
chr15	34090316	34090385	15202841	0	-	0.434783	(0.42,0.455]	chr15	1196598	1	CDS	CDS:EXON_MRNA	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.91132	4.411725000000001	4.91213	1.75074e-4	3.67157e-6	0.00306313	1.1967e-4
chr6	36902220	36902284	7135524	0	+	0.453125	(0.42,0.455]	chr6	549775	1	CDS	CDS:UTR5:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.91097	4.41155	4.91213	1.75074e-4	8.75299e-5	0.00306313	0.0016272
chr19	11113363	11113449	17230109	0	+	0.546512	(0.53,0.59]	chr19	1419586	2	CDS	CDS:EXON_MRNA:PRIMIRNA	LDLR:MIR6886	ENSG00000130164.14:ENSG00000284553.1	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1:ENST00000619864.1:ENST00000559340.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	4	128	2	3.85383	4.41153	4.96923	5.99548e-6	6.836e-10	1.97492e-4	7.45532e-8
chr3	14447720	14447820	3320443	0	+	0.53	(0.49,0.53]	chr3	292227	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	123	2	4.0672	4.411295	4.75539	1.03324e-7	3.11597e-9	5.73189e-6	3.07872e-7
chr1	99738176	99738268	1197642	0	-	0.467391	(0.455,0.49]	chr1	116890	2	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	4.28007	4.410905	4.54174	0.00130137	8.3464e-6	0.0136936	2.58924e-4
chr7	100035695	100035795	8425111	0	+	0.45	(0.42,0.455]	chr7	642421	16	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.90921	4.41067	4.91213	0.0121657	1.75074e-4	0.0701019	0.00306313
chr11	86014869	86014946	12526305	0	-	0.311688	(0.29,0.33]	chr11	972251	1	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	3.51776	4.41065	5.30354	9.94392e-5	1.89876e-5	0.00195926	4.64808e-4
chr20	32150621	32150703	17752478	0	+	0.585366	(0.53,0.59]	chr20	1498504	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	6	183	2	3.21514	4.410545	5.60595	1.71972e-5	1.23113e-12	4.33104e-4	2.96939e-10
chr2	75659931	75660030	1894608	0	+	0.313131	(0.29,0.33]	chr2	179770	48	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.73761	4.410455000000001	5.0833	2.33029e-4	4.57622e-5	0.00355688	0.00105479
chr1	121020797	121020897	1258912	0	-	0.44	(0.42,0.455]	chr1	123336	124	INTRON	INTRON	PDE4DIPP4	ENSG00000275585.2	ENST00000612313.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	51	2	4.29489	4.410415	4.52594	0.00144145	1.70825e-7	0.0147046	1.00086e-5
chr6	139373231	139373318	7995335	0	-	0.471264	(0.455,0.49]	chr6	611350	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2:ENST00000618718.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.49306	4.410325	5.32759	6.07633e-5	1.92345e-5	0.00121305	5.18397e-4
chr1	84498473	84498548	1130731	0	-	0.4	(0.39,0.42]	chr1	112598	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	10	186	2	3.98671	4.41026	4.83381	8.2332e-10	4.07943e-11	8.8192e-8	6.71989e-9
chr15	65879670	65879751	14982243	0	+	0.358025	(0.33,0.36]	chr15	1177736	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	3.98815	4.4100649999999995	4.83198	1.88689e-4	1.81315e-7	0.0032588	9.3576e-6
chr7	105112575	105112669	8449883	0	+	0.585106	(0.53,0.59]	chr7	645366	9	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.80515	4.41003	6.01491	6.42453e-4	6.18274e-7	0.00850441	2.65059e-5
chr11	2884003	2884103	12233183	0	-	0.72	(0.59,1]	chr11	944794	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CDKN1C	ENSG00000129757.15	ENST00000414822.8:ENST00000440480.8:ENST00000430149.3:ENST00000380725.2:ENST00000681969.1:ENST00000647251.1:ENST00000471157.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	27	2	4.34487	4.41002	4.47517	0.0123678	0.00735659	0.0705839	0.0491503
chr19	47271578	47271678	17361082	0	+	0.62	(0.59,1]	chr19	1441053	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.34487	4.41002	4.47517	0.0123678	0.00735659	0.0705839	0.0491503
chr6	87701516	87701584	7828223	0	-	0.823529	(0.59,1]	chr6	599866	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AKIRIN2	ENSG00000135334.9	ENST00000257787.6:ENST00000420494.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	4.37323	4.40997	4.44671	0.00990413	0.00931497	0.061536	0.0586162
chr6	160073383	160073469	7528631	0	+	0.604651	(0.59,1]	chr6	574891	3	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000487607.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.37323	4.40997	4.44671	0.00990413	0.00931497	0.061536	0.0586162
chr1	47280433	47280530	985990	0	-	0.474227	(0.455,0.49]	chr1	104121	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	63	2	3.27489	4.409865	5.54484	1.06338e-5	4.89523e-6	2.90771e-4	1.67428e-4
chr1	99712417	99712515	1197378	0	-	0.510204	(0.49,0.53]	chr1	116854	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000489209.2:ENST00000492943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	3.85244	4.409595	4.96675	5.52735e-6	5.35448e-8	1.83781e-4	3.27447e-6
chr22	24568079	24568176	18314209	0	+	0.484536	(0.455,0.49]	chr22	1556257	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SNRPD3:KB-1995A5.6	ENSG00000100028.12:ENSG00000286070.2	ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.69169	4.40947	6.12725	0.00126948	1.23635e-7	0.0139061	6.7072e-6
chr8	86560302	86560402	9457727	0	+	0.39	(0.36,0.39]	chr8	720297	20	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.69835	4.409445	5.12054	3.2708e-4	7.15553e-5	0.00502339	0.00137393
chr16	70556178	70556256	15730002	0	+	0.512821	(0.49,0.53]	chr16	1252965	1	CDS	CDS:UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567635.5:ENST00000567250.5:ENST00000568291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	3.1011	4.409155	5.71721	5.69237e-4	2.77472e-6	0.00778538	9.47025e-5
chr10	74118867	74118967	11117656	0	+	0.57	(0.53,0.59]	chr10	846311	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	210	2	4.07305	4.409095000000001	4.74514	4.78756e-9	2.87701e-10	4.44837e-7	3.47555e-8
chr12	24894274	24894341	13256509	0	-	0.477612	(0.455,0.49]	chr12	1038898	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.49033	4.40896	5.32759	7.92678e-4	1.92345e-5	0.00933379	5.18397e-4
chr2	73252700	73252761	1885509	0	+	0.622951	(0.59,1]	chr2	178586	2	CDS	CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.4558	4.408915	5.36203	3.74697e-4	1.35447e-4	0.00560631	0.00231202
chr14	21352273	21352372	14521131	0	-	0.424242	(0.42,0.455]	chr14	1137303	9	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.37329	4.40885	5.44441	0.00136107	8.23077e-6	0.0141115	2.56136e-4
chr22	19175763	19175854	18431150	0	-	0.769231	(0.59,1]	chr22	1570486	3	UTR3	UTR3:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	363	2	3.74273	4.40865	5.07457	6.59678e-7	3.32035e-10	3.11106e-5	3.95092e-8
chr10	91254136	91254236	11187495	0	+	0.44	(0.42,0.455]	chr10	850412	23	INTRON	INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.05954	4.40841	4.75728	0.00617886	5.3817e-4	0.0439741	0.00686676
chr19	2733394	2733485	17425553	0	-	0.615385	(0.59,1]	chr19	1453655	7	CDS	CDS:EXON_MRNA:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9:ENST00000589363.5:ENST00000589166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.61074	4.40841	6.20608	0.025486	4.1102e-6	0.117089	1.31763e-4
chr2	33262721	33262772	1721452	0	+	0.431373	(0.42,0.455]	chr2	168712	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000413303.5:ENST00000468091.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.05954	4.40841	4.75728	0.00617886	5.3817e-4	0.0439741	0.00686676
chr2	159461889	159461988	2959347	0	-	0.444444	(0.42,0.455]	chr2	262618	37	EXON_LNCRNA	EXON_LNCRNA:INTRON	BAZ2B	ENSG00000123636.18	ENST00000392782.5:ENST00000392783.7:ENST00000467184.5:ENST00000482503.5:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	4.05954	4.40841	4.75728	0.00617886	5.3817e-4	0.0439741	0.00686676
chr5	72232500	72232558	6631444	0	-	0.431034	(0.42,0.455]	chr5	512563	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000513900.5:ENST00000508863.6:ENST00000522562.5:ENST00000522042.1:ENST00000515404.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.05954	4.40841	4.75728	0.00617886	5.3817e-4	0.0439741	0.00686676
chr7	107516737	107516837	8986120	0	-	0.45	(0.42,0.455]	chr7	687382	359	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.05954	4.40841	4.75728	0.00617886	5.3817e-4	0.0439741	0.00686676
chr7	151218560	151218650	9129971	0	-	0.422222	(0.42,0.455]	chr7	697876	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7:ENST00000473874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.05954	4.40841	4.75728	0.00617886	5.3817e-4	0.0439741	0.00686676
chr1	111182298	111182316	406191	0	+	0.277778	[0,0.29]	chr1	39897	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.36183	4.40801	4.45419	0.00170062	0.00133426	0.01759	0.0139317
chr12	122473096	122473196	13590474	0	-	0.21	[0,0.29]	chr12	1070312	16	UTR3	UTR3:EXON_MRNA	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000538116.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.36183	4.40801	4.45419	0.00170062	0.00133426	0.01759	0.0139317
chr1	111119876	111119959	1223964	0	-	0.445783	(0.42,0.455]	chr1	119650	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000477588.5:ENST00000477769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	3.61323	4.407955	5.20268	3.59669e-5	2.83914e-5	8.71318e-4	6.46853e-4
chr1	30877047	30877147	915942	0	-	0.64	(0.59,1]	chr1	95928	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11:ENST00000471567.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	29	2	3.84557	4.40786	4.97015	0.0410704	0.00140057	0.163285	0.0144327
chr7	100108024	100108123	8949738	0	-	0.686869	(0.59,1]	chr7	683574	2	CDS	CDS:UTR3:EXON_MRNA	TAF6	ENSG00000106290.15	ENST00000421980.5:ENST00000453269.7:ENST00000452041.5:ENST00000472509.5:ENST00000344095.8:ENST00000437822.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	29	2	3.84557	4.40786	4.97015	0.0410704	0.00140057	0.163285	0.0144327
chr1	109593336	109593435	399349	0	+	0.40404	(0.39,0.42]	chr1	38901	11	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.35466	4.407755	5.46085	1.40185e-4	5.81708e-6	0.00236775	1.921e-4
chr17	35724571	35724668	16207508	0	+	0.309278	(0.29,0.33]	chr17	1309154	10	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	3.85216	4.407545	4.96293	1.03145e-5	4.06577e-8	3.09366e-4	2.58327e-6
chr2	112647006	112647084	2001743	0	+	0.525641	(0.49,0.53]	chr2	190004	2	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.35133	4.4070350000000005	5.46274	0.00150139	1.13094e-5	0.0152367	3.3464e-4
chr7	32570019	32570086	8210254	0	+	0.507463	(0.49,0.53]	chr7	626472	1	CDS	CDS:EXON_MRNA	AVL9	ENSG00000105778.19	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.35133	4.4070350000000005	5.46274	0.00150139	1.13094e-5	0.0152367	3.3464e-4
chr1	225410353	225410416	1528145	0	-	0.444444	(0.42,0.455]	chr1	152798	2	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	3.62635	4.40684	5.18733	2.72662e-5	7.80521e-9	6.94447e-4	6.26576e-7
chr11	88309162	88309235	12533218	0	-	0.452055	(0.42,0.455]	chr11	972534	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000678065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.83395	4.406835	5.97972	6.25227e-4	4.13864e-7	0.00830005	1.88179e-5
chr6	33303931	33303989	7669245	0	-	0.5	(0.49,0.53]	chr6	587567	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.8233	4.40682	4.99034	1.6002e-4	1.44192e-4	0.00286408	0.00242438
chrX	53547672	53547757	19077319	0	-	0.529412	(0.49,0.53]	chrX	1622706	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.8233	4.40682	4.99034	1.6002e-4	1.44192e-4	0.00286408	0.00242438
chr8	11852609	11852695	9699298	0	-	0.581395	(0.53,0.59]	chr8	734847	1	CDS	CDS:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000525315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	3.69065	4.406615	5.12258	3.04331e-4	1.9405e-8	0.00472028	1.37715e-6
chr1	161454883	161454982	1333745	0	-	0.727273	(0.59,1]	chr1	136938	140	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	12	665	2	3.1162	4.406585	5.69697	1.13719e-5	1e-12	3.36394e-4	2.25522e-10
chr1	179350295	179350363	576482	0	+	0.411765	(0.39,0.42]	chr1	59845	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.0503	4.40637	5.76244	0.00570576	1.61725e-6	0.0424438	5.98677e-5
chr5	80649999	80650086	6667595	0	-	0.425287	(0.42,0.455]	chr5	514740	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	DHFR:MTRNR2L2	ENSG00000228716.7:ENSG00000271043.2	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1:ENST00000604882.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	8	184	2	3.57602	4.40609	5.23616	2.90487e-7	1.03817e-12	1.56459e-5	2.33375e-10
chr21	33553406	33553505	18101191	0	+	0.565657	(0.53,0.59]	chr21	1534527	28	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	3.11779	4.40595	5.69411	5.11883e-4	5.01544e-6	0.00664583	1.7067e-4
chr1	15935268	15935368	71889	0	+	0.57	(0.53,0.59]	chr1	8104	73	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.1234	4.405755	5.68811	0.00390623	5.40688e-6	0.0322851	1.64762e-4
chr1	4421072	4421171	15516	0	+	0.545455	(0.53,0.59]	chr1	2581	31	INTRON	INTRON	LINC01777	ENSG00000235054.4	ENST00000635002.1:ENST00000635312.2:ENST00000669931.1:ENST00000423197.2:ENST00000668086.1:ENST00000659315.1:ENST00000667352.1:ENST00000635642.1	lncRNA	lncRNA	lncRNA	lncRNA	0	25	2	3.61856	4.40572	5.19288	0.0303021	9.22873e-5	0.129773	0.0016906
chr1	236484136	236484235	769260	0	+	0.555556	(0.53,0.59]	chr1	77526	16	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	0	25	2	3.61856	4.40572	5.19288	0.0303021	9.22873e-5	0.129773	0.0016906
chr14	64449444	64449533	14344139	0	+	0.561798	(0.53,0.59]	chr14	1121375	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000553405.1:ENST00000651891.1:ENST00000556284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	3.61856	4.40572	5.19288	0.0303021	9.22873e-5	0.129773	0.0016906
chr8	70574835	70574931	9881284	0	-	0.28125	[0,0.29]	chr8	746911	18	UTR3	UTR3:EXON_MRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.47088	4.405645	5.34041	0.0015572	1.38223e-5	0.0165415	3.58914e-4
chr15	77112655	77112755	15388645	0	-	0.49	(0.455,0.49]	chr15	1216690	121	UTR3	UTR3:EXON_MRNA	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.20069	4.40562	5.61055	0.00285821	3.16146e-6	0.0245841	1.16228e-4
chr1	20655779	20655879	882289	0	-	0.61	(0.59,1]	chr1	91143	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.98751	4.40538	4.82325	0.0301044	0.002381	0.129773	0.0216895
chr7	143388855	143388945	8581651	0	+	0.677778	(0.59,1]	chr7	655856	2	CDS	CDS:EXON_MRNA	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.98751	4.40538	4.82325	0.0301044	0.002381	0.129773	0.0216895
chr7	151075690	151075775	8617534	0	+	0.541176	(0.53,0.59]	chr7	658385	2	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.5393	4.405085	5.27087	6.46017e-4	5.9416e-5	0.00799743	0.00130151
chr17	42125155	42125245	16545933	0	-	0.566667	(0.53,0.59]	chr17	1356948	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.61133	4.40508	5.19883	4.55298e-4	8.7034e-5	0.00608573	0.00177086
chr7	5560976	5561055	8111985	0	+	0.531646	(0.53,0.59]	chr7	620010	4	EXON_PSEUDO	EXON_PSEUDO	AC006483.5	ENSG00000228974.5	ENST00000487308.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	39	2	3.61133	4.40508	5.19883	4.55298e-4	8.7034e-5	0.00608573	0.00177086
chr1	32771849	32771948	130791	0	+	0.727273	(0.59,1]	chr1	16158	21	CDS	CDS:EXON_MRNA:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.01545	4.404975	4.7945	0.0251889	0.0031766	0.114168	0.0279054
chr10	104315180	104315277	11678452	0	-	0.618557	(0.59,1]	chr10	891073	8	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	4.01545	4.404975	4.7945	0.0251889	0.0031766	0.114168	0.0279054
chr1	149840846	149840916	1286936	0	-	0.714286	(0.59,1]	chr1	127829	1	CDS	CDS:EXON_MRNA	H3C14	ENSG00000203811.1	ENST00000369158.1	protein_coding	protein_coding	protein_coding	protein_coding	6	230	2	3.102	4.404935	5.70787	3.25562e-5	3.39781e-9	7.20475e-4	3.32573e-7
chr1	172441927	172442026	1369789	0	-	0.494949	(0.49,0.53]	chr1	139583	2	CDS	CDS:EXON_MRNA:INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1:ENST00000367728.1:ENST00000344529.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.38192	4.40491	4.4279	0.00259709	0.00196987	0.0229695	0.0193972
chr14	23079546	23079643	14529223	0	-	0.505155	(0.49,0.53]	chr14	1138540	1	CDS	CDS:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5:ENST00000554708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.38192	4.40491	4.4279	0.00259709	0.00196987	0.0229695	0.0193972
chr15	63581350	63581449	14973867	0	+	0.515152	(0.49,0.53]	chr15	1176948	66	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.38192	4.40491	4.4279	0.00259709	0.00196987	0.0229695	0.0193972
chr19	10469247	10469343	17225343	0	+	0.5	(0.49,0.53]	chr19	1418676	18	UTR3	UTR3:EXON_MRNA	PDE4A	ENSG00000065989.16	ENST00000380702.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.38192	4.40491	4.4279	0.00259709	0.00196987	0.0229695	0.0193972
chr2	130151584	130151681	2873808	0	-	0.525773	(0.49,0.53]	chr2	257050	3	UTR3	UTR3:EXON_MRNA	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000482171.5:ENST00000491128.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.38192	4.40491	4.4279	0.00259709	0.00196987	0.0229695	0.0193972
chr20	50127974	50128045	18004611	0	-	0.56338	(0.53,0.59]	chr20	1526020	1	CDS	CDS:UTR3:EXON_MRNA	PEDS1-UBE2V1:PEDS1	ENSG00000124208.16:ENSG00000240849.11	ENST00000341698.2:ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6:ENST00000371658.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.02054	4.404905	5.78927	0.00577011	2.83401e-6	0.0426551	9.62519e-5
chr19	36149577	36149651	17308836	0	+	0.486486	(0.455,0.49]	chr19	1432253	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000589162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	35	2	3.93794	4.4049	4.87186	2.33781e-4	7.43966e-5	0.00385436	0.00142165
chr17	38853697	38853710	16532308	0	-	0.538462	(0.53,0.59]	chr17	1353515	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000577407.5:ENST00000577760.1:ENST00000584056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	142	2	3.94175	4.40487	4.86799	3.37749e-7	1.73438e-9	1.77431e-5	1.70834e-7
chr19	12924903	12925003	17472076	0	-	0.59	(0.53,0.59]	chr19	1463341	1	CDS	CDS:UTR3:EXON_MRNA	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5:ENST00000593021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.06939	4.4044799999999995	5.73957	6.54756e-4	3.90343e-6	0.00860229	1.26306e-4
chr17	82085095	82085156	16710748	0	-	0.606557	(0.59,1]	chr17	1378186	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.89783	4.404425	5.91102	0.00198798	2.06903e-5	0.0195488	4.99825e-4
chr1	109094677	109094775	396869	0	+	0.44898	(0.42,0.455]	chr1	38418	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1:ENST00000479160.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.8515	4.40405	4.9566	0.0119089	2.10615e-4	0.0686664	0.00327655
chr16	74626483	74626554	16032635	0	-	0.43662	(0.42,0.455]	chr16	1287415	3	CDS	CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8515	4.40405	4.9566	0.0119089	2.10615e-4	0.0686664	0.00327655
chr2	242159348	242159423	2473942	0	+	0.44	(0.42,0.455]	chr2	223895	1	EXON_LNCRNA	EXON_LNCRNA	LINC01881	ENSG00000220804.9	ENST00000622435.4:ENST00000614114.4:ENST00000682782.1:ENST00000683938.1:ENST00000682139.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	21	2	3.8515	4.40405	4.9566	0.0119089	2.10615e-4	0.0686664	0.00327655
chr3	45743735	45743833	3450164	0	+	0.438776	(0.42,0.455]	chr3	300538	1	UTR3	UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.8515	4.40405	4.9566	0.0119089	2.10615e-4	0.0686664	0.00327655
chr4	118731411	118731507	5617910	0	-	0.447917	(0.42,0.455]	chr4	447563	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5:ENST00000511715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.8515	4.40405	4.9566	0.0119089	2.10615e-4	0.0686664	0.00327655
chr7	16609629	16609697	8703096	0	-	0.441176	(0.42,0.455]	chr7	664665	1	CDS	CDS:EXON_MRNA	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3:ENST00000628652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.8515	4.40405	4.9566	0.0119089	2.10615e-4	0.0686664	0.00327655
chr3	155853465	155853551	4538373	0	-	0.453488	(0.42,0.455]	chr3	376029	3	CDS	CDS:EXON_MRNA	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	3.19078	4.40396	5.61714	0.00310864	4.98624e-6	0.0274272	1.54467e-4
chr21	44856278	44856364	18277478	0	-	0.593023	(0.59,1]	chr21	1550263	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	94	2	2.19905	4.403955	6.60886	0.0105866	6.00443e-7	0.0644466	2.85621e-5
chr22	37225365	37225461	18503489	0	-	0.5	(0.49,0.53]	chr22	1578938	2	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.96757	4.40371	4.83985	6.21316e-5	1.50325e-7	0.00134149	7.97048e-6
chr1	181090566	181090663	587437	0	+	0.298969	(0.29,0.33]	chr1	60876	8	UTR3	UTR3:EXON_MRNA	IER5	ENSG00000162783.11	ENST00000367577.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.24387	4.403615	4.56336	0.00263476	8.8231e-4	0.0239118	0.0101404
chr2	43977215	43977276	2623875	0	-	0.311475	(0.29,0.33]	chr2	236272	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1:ENST00000682496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.24387	4.403615	4.56336	0.00263476	8.8231e-4	0.0239118	0.0101404
chr2	27409506	27409591	2570715	0	-	0.752941	(0.59,1]	chr2	231579	2	UTR5	UTR5:EXON_MRNA	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.58133	4.40341	5.22549	8.92036e-4	5.13843e-4	0.010856	0.00665221
chr19	38305351	38305451	17559370	0	-	0.67	(0.59,1]	chr19	1474556	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	354	2	3.24789	4.40338	5.55887	6.78607e-7	9.90014e-9	2.87742e-5	8.44029e-7
chrX	110067346	110067396	18819871	0	+	0.56	(0.53,0.59]	chrX	1603908	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	2.33084	4.403345	6.47585	0.00283321	1.951e-8	0.0252865	1.37715e-6
chr17	76563118	76563214	16359180	0	+	0.520833	(0.49,0.53]	chr17	1328581	1	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	3	83	2	4.39992	4.403295	4.40667	3.62526e-6	8.12059e-8	1.29307e-4	4.6844e-6
chr10	71851221	71851273	11563576	0	-	0.673077	(0.59,1]	chr10	880034	1	UTR5	UTR5:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.24972	4.403264999999999	5.55681	0.00314037	1.60495e-4	0.0264943	0.00286914
chr9	89316372	89316425	10349739	0	+	0.339623	(0.33,0.36]	chr9	779004	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.9738	4.40289	4.83198	1.88689e-4	5.94302e-5	0.0032588	0.00119141
chr1	39504491	39504590	150208	0	+	0.474747	(0.455,0.49]	chr1	18718	118	INTRON	INTRON	BMP8A	ENSG00000183682.8	ENST00000331593.6	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	3.11472	4.4028849999999995	5.69105	3.40155e-5	2.83777e-6	8.31666e-4	9.62519e-5
chr17	28561421	28561490	16485779	0	-	0.608696	(0.59,1]	chr17	1347709	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.2353	4.402835	4.57037	0.0165254	0.0054994	0.0873033	0.0402071
chr19	1621903	1621970	17419639	0	-	0.626866	(0.59,1]	chr19	1452696	2	CDS	CDS:EXON_MRNA	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000610756.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.2353	4.402835	4.57037	0.0165254	0.0054994	0.0873033	0.0402071
chr19	40818607	40818704	17567657	0	-	0.618557	(0.59,1]	chr19	1476645	3	EXON_LNCRNA	EXON_LNCRNA	CYP2F2P	ENSG00000237118.3	ENST00000641827.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	27	2	4.2353	4.402835	4.57037	0.0165254	0.0054994	0.0873033	0.0402071
chr20	35277032	35277129	17952383	0	-	0.618557	(0.59,1]	chr20	1520648	8	UTR3	UTR3:EXON_MRNA:INTRON	MMP24OS:RP4-614O4.11	ENSG00000126005.17:ENSG00000261582.1	ENST00000635104.1:ENST00000566203.6:ENST00000433764.5:ENST00000438751.5:ENST00000454184.5:ENST00000456350.5:ENST00000444717.1:ENST00000455178.1:ENST00000456790.2:ENST00000435366.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.2353	4.402835	4.57037	0.0165254	0.0054994	0.0873033	0.0402071
chrX	39787405	39787496	19044752	0	-	0.604396	(0.59,1]	chrX	1618678	4	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	27	2	4.26354	4.402685	4.54183	0.0134233	0.0070583	0.0743429	0.0478044
chr17	28649205	28649276	16486773	0	-	0.478873	(0.455,0.49]	chr17	1348103	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SDF2	ENSG00000132581.10	ENST00000247020.9:ENST00000592250.5:ENST00000585749.5:ENST00000588472.6:ENST00000587788.1:ENST00000587629.5:ENST00000591903.1:ENST00000589788.1:ENST00000587338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.3605	4.40266	5.44482	0.00147278	1.36044e-5	0.0157578	3.54469e-4
chr16	33980963	33981058	15640348	0	+	0.578947	(0.53,0.59]	chr16	1242735	1	EXON_PSEUDO	EXON_PSEUDO	RP11-598D12.4	ENSG00000198555.7	ENST00000568600.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	42	2	4.13569	4.402525000000001	4.66936	0.00103174	2.50241e-5	0.0121443	5.82427e-4
chr6	26103932	26103947	7101124	0	+	0.466667	(0.455,0.49]	chr6	542786	1	UTR5	UTR5:EXON_MRNA	H4C3	ENSG00000197061.5	ENST00000377803.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.64247	4.40231	5.16215	5.04348e-5	2.341e-5	0.00113788	5.54056e-4
chr4	140542573	140542642	5131576	0	+	0.347826	(0.33,0.36]	chr4	415454	1	CDS	CDS:EXON_MRNA	ELMOD2	ENSG00000179387.10	ENST00000323570.8:ENST00000512057.1:ENST00000502290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.3227	4.40228	5.48186	0.00222616	7.22374e-6	0.0211992	2.11873e-4
chrX	103676065	103676160	19155326	0	-	0.326316	(0.29,0.33]	chrX	1629338	7	UTR3	UTR3:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	12	182	2	4.04007	4.40197	4.76387	4.52027e-10	1.27054e-12	5.71527e-8	2.78435e-10
chr2	74198641	74198741	1891564	0	+	0.64	(0.59,1]	chr2	179148	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000488086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	115	2	2.05954	4.401895	6.74425	0.00660398	1.52822e-7	0.045496	8.06807e-6
chr3	76435428	76435527	3565402	0	+	0.464646	(0.455,0.49]	chr3	309339	1	INTRON	INTRON	ROBO2	ENSG00000185008.17	ENST00000487694.7:ENST00000602589.5:ENST00000475034.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.40009	4.401895	5.4037	0.00120619	1.20695e-5	0.0129255	3.52389e-4
chr7	100091689	100091789	8425366	0	+	0.5	(0.49,0.53]	chr7	642476	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000474823.5:ENST00000426712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.60476	4.401795	5.19883	4.52633e-4	6.30063e-5	0.00642319	0.00124286
chr1	54040755	54040837	1027266	0	-	0.390244	(0.39,0.42]	chr1	106615	1	CDS	CDS:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	3.05461	4.401765	5.74892	8.55091e-4	3.307e-11	0.0105173	5.06254e-9
chr3	47588012	47588110	4161761	0	-	0.55102	(0.53,0.59]	chr3	348302	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	209	2	4.1014	4.401725	4.70205	3.78136e-9	4.20396e-10	3.34749e-7	5.3706e-8
chr12	16363875	16363941	12753015	0	+	0.469697	(0.455,0.49]	chr12	991384	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MGST1	ENSG00000008394.13	ENST00000010404.6:ENST00000396210.8:ENST00000543076.5:ENST00000539036.5:ENST00000542256.5:ENST00000539708.5:ENST00000535309.5:ENST00000396209.5:ENST00000540056.5:ENST00000396207.1:ENST00000538857.1:ENST00000535624.1:ENST00000624056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:TEC:processed_transcript	1	34	2	3.73142	4.4015699999999995	5.07172	2.35261e-4	8.3067e-5	0.00356397	0.00171126
chr18	57602811	57602877	17137478	0	-	0.469697	(0.455,0.49]	chr18	1407145	1	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.73142	4.4015699999999995	5.07172	2.35261e-4	8.3067e-5	0.00356397	0.00171126
chr2	152759746	152759840	2139520	0	+	0.457447	(0.455,0.49]	chr2	198150	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000455875.5:ENST00000425034.5:ENST00000463690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	3.73142	4.4015699999999995	5.07172	2.35261e-4	8.3067e-5	0.00356397	0.00171126
chr1	19378594	19378653	878174	0	-	0.576271	(0.53,0.59]	chr1	90690	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000457768.6:ENST00000489607.5:ENST00000674278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.67993	4.40147	5.12301	3.22778e-4	1.2852e-4	0.0046122	0.00241206
chr1	167546100	167546192	1347878	0	-	0.380435	(0.36,0.39]	chr1	137999	1	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	8	156	2	4.35915	4.401325	4.4435	5.16588e-8	4.06573e-11	3.49015e-6	6.1246e-9
chr3	156543202	156543269	4538664	0	-	0.462687	(0.455,0.49]	chr3	376077	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	160	2	3.97238	4.40105	4.82972	2.68299e-9	1.29944e-9	2.49613e-7	1.43153e-7
chr4	76114923	76115011	5475178	0	-	0.284091	[0,0.29]	chr4	438872	4	UTR3	UTR3:EXON_MRNA	NUP54	ENSG00000138750.15	ENST00000507257.5:ENST00000508604.5:ENST00000264883.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.87835	4.40078	4.92321	1.17014e-4	1.0775e-4	0.00222617	0.00192514
chr2	47800481	47800581	1788206	0	+	0.39	(0.36,0.39]	chr2	172666	16	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	4.21361	4.4005399999999995	4.58747	6.55819e-4	1.31698e-5	0.00860229	3.45454e-4
chr1	21880106	21880180	891278	0	-	0.594595	(0.59,1]	chr1	92551	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	4.16976	4.40041	4.63106	0.00537945	4.80088e-5	0.0406564	9.91058e-4
chr12	7143236	7143311	12717312	0	+	0.626667	(0.59,1]	chr12	987708	2	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000541770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	4.00624	4.400370000000001	4.7945	0.0031766	1.12192e-4	0.0279054	0.00199438
chr9	112231379	112231413	10803002	0	-	0.382353	(0.36,0.39]	chr9	818433	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.53311	4.400175	6.26724	0.00345778	2.79819e-8	0.0293796	1.8758e-6
chr3	127616867	127616950	3723556	0	+	0.53012	(0.53,0.59]	chr3	318276	1	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	4.36133	4.399979999999999	4.43863	0.00254763	5.91026e-6	0.0233955	1.77972e-4
chr3	156553658	156553758	4538776	0	-	0.37	(0.36,0.39]	chr3	376102	1	CDS_START	CDS_START:CDS:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	221	2	3.94455	4.399605	4.85466	9.30337e-10	4.01775e-11	1.07479e-7	6.05757e-9
chr13	46152779	46152862	14009880	0	-	0.457831	(0.455,0.49]	chr13	1098552	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5:ENST00000494531.1:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.73589	4.399355	5.06282	2.30579e-4	1.16789e-4	0.00382267	0.0020505
chr2	136329534	136329629	2899184	0	-	0.578947	(0.53,0.59]	chr2	258698	2	EXON_PSEUDO	EXON_PSEUDO	UBBP1	ENSG00000230037.1	ENST00000392399.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	118	2	4.29638	4.3993199999999995	4.50226	2.26633e-7	4.1572e-8	1.12729e-5	2.90702e-6
chr17	48059157	48059253	16253367	0	+	0.520833	(0.49,0.53]	chr17	1317132	10	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000581319.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.80825	4.399295	4.99034	1.6002e-4	7.68944e-6	0.00286408	2.20857e-4
chr3	4980354	4980408	3277609	0	+	0.5	(0.49,0.53]	chr3	288707	2	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1:ENST00000460806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.80825	4.399295	4.99034	1.6002e-4	7.68944e-6	0.00286408	2.20857e-4
chr10	74267710	74267809	11118853	0	+	0.434343	(0.42,0.455]	chr10	846346	243	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.39468	4.39872	4.40276	0.00240483	0.0017618	0.0217482	0.0180053
chr10	119168479	119168533	11717947	0	-	0.425926	(0.42,0.455]	chr10	893952	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.39468	4.39872	4.40276	0.00240483	0.0017618	0.0217482	0.0180053
chr3	155853638	155853724	4538375	0	-	0.430233	(0.42,0.455]	chr3	376029	5	CDS	CDS:EXON_MRNA	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.39468	4.39872	4.40276	0.00240483	0.0017618	0.0217482	0.0180053
chr5	64891743	64891843	6001011	0	+	0.43	(0.42,0.455]	chr5	470074	58	INTRON	INTRON	CWC27	ENSG00000153015.16	ENST00000381070.8:ENST00000545000.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.39468	4.39872	4.40276	0.00240483	0.0017618	0.0217482	0.0180053
chr7	72622613	72622713	8849601	0	-	0.43	(0.42,0.455]	chr7	675303	54	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.39468	4.39872	4.40276	0.00240483	0.0017618	0.0217482	0.0180053
chr8	47798236	47798316	9815727	0	-	0.4	(0.39,0.42]	chr8	742523	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.18738	4.39848	5.60958	7.15306e-5	2.11003e-6	0.00137393	8.25026e-5
chr11	74835742	74835840	12020702	0	+	0.510204	(0.49,0.53]	chr11	926730	3	CDS	CDS:EXON_MRNA	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.23759	4.39844	4.55929	0.00436474	0.00116196	0.0335517	0.0130851
chr21	43978045	43978121	18137590	0	+	0.486842	(0.455,0.49]	chr21	1538547	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.9967	4.3983550000000005	5.80001	0.00650423	1.35407e-6	0.0454205	5.16241e-5
chr2	85319797	85319896	2770108	0	-	0.484848	(0.455,0.49]	chr2	245643	19	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.92463	4.398245	4.87186	0.0113417	2.33781e-4	0.0665375	0.00385436
chr22	36265835	36265933	18360628	0	+	0.489796	(0.455,0.49]	chr22	1561192	8	CDS	CDS:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000397278.8:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.92463	4.398245	4.87186	0.0113417	2.33781e-4	0.0665375	0.00385436
chr1	44988427	44988524	973482	0	-	0.505155	(0.49,0.53]	chr1	102741	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP35	ENSG00000232369.1	ENST00000411837.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr1	148482857	148482955	1281742	0	-	0.5	(0.49,0.53]	chr1	127003	1	CDS	CDS:EXON_MRNA:INTRON	LINC01138:PPIAL4G	ENSG00000274020.4:ENSG00000236334.3	ENST00000639181.1:ENST00000653634.1:ENST00000639159.1:ENST00000658866.1:ENST00000658938.1:ENST00000419275.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr1	167776063	167776114	524461	0	+	0.509804	(0.49,0.53]	chr1	56276	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3:ENST00000403379.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr3	127621773	127621867	3723616	0	+	0.510638	(0.49,0.53]	chr3	318305	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000468414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr5	314515	314606	5848844	0	+	0.516484	(0.49,0.53]	chr5	459659	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2546F11.1:PDCD6:PDCD6-AHRR	ENSG00000286001.1:ENSG00000249915.8:ENSG00000288622.1	ENST00000651543.1:ENST00000614778.4:ENST00000618970.4:ENST00000628729.2:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505113.6:ENST00000675395.1:ENST00000507473.1:ENST00000512529.6:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr7	6434847	6434933	8664386	0	-	0.5	(0.49,0.53]	chr7	662793	2	CDS	CDS:EXON_MRNA:INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr7	137722462	137722558	8560989	0	+	0.510417	(0.49,0.53]	chr7	653090	6	EXON_PSEUDO	EXON_PSEUDO	AC009245.3	ENSG00000230383.1	ENST00000456481.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.28332	4.39822	4.51312	0.00338762	0.00156636	0.0288632	0.0156889
chr16	28843735	28843795	15907763	0	-	0.566667	(0.53,0.59]	chr16	1273887	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TUFM:MIR4721	ENSG00000178952.11:ENSG00000283845.1	ENST00000313511.8:ENST00000569217.1:ENST00000577590.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	50	2	2.515	4.39809	6.28118	0.0292633	8.87941e-8	0.129773	5.04867e-6
chr19	5896904	5896997	17437916	0	-	0.569892	(0.53,0.59]	chr19	1456271	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AC024592.12:NDUFA11	ENSG00000267740.5:ENSG00000174886.14	ENST00000592091.5:ENST00000586349.5:ENST00000585661.1:ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	3.39705	4.3980250000000005	5.399	1.10308e-4	3.02387e-5	0.00211768	6.78876e-4
chr6	27842061	27842161	7105204	0	+	0.36	(0.33,0.36]	chr6	543480	4	SS5_PROX	SS5_PROX:INTRON	H2BC15	ENSG00000233822.5	ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	114	2	4.04629	4.398015	4.74974	1.51093e-7	1.20737e-10	8.98614e-6	1.60408e-8
chr3	31580000	31580096	3391921	0	+	0.395833	(0.39,0.42]	chr3	295020	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.66467	4.39778	5.13089	3.60066e-4	1.17016e-8	0.00544157	8.85759e-7
chr7	100631875	100631945	8952282	0	-	0.571429	(0.53,0.59]	chr7	684194	2	CDS	CDS:EXON_MRNA:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	98	2	3.44509	4.39761	5.35013	8.31409e-5	2.75928e-9	0.00171126	2.54269e-7
chr18	31520802	31520883	16808889	0	+	0.358025	(0.33,0.36]	chr18	1386418	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13:ENST00000585206.1:ENST00000683654.1:ENST00000683614.1:ENST00000682087.1:ENST00000682241.1:ENST00000684461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	3.39492	4.39744	5.39996	1.86991e-5	6.52649e-6	4.59195e-4	2.12073e-4
chr20	49085282	49085334	17811752	0	+	0.423077	(0.42,0.455]	chr20	1506552	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	4.22524	4.39706	4.56888	1.2079e-5	1.1745e-6	3.52389e-4	4.57782e-5
chr16	69118393	69118489	15993726	0	-	0.5625	(0.53,0.59]	chr16	1284017	5	UTR3	UTR3:EXON_MRNA	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5:ENST00000519534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	3.20874	4.39702	5.5853	0.00278422	9.83355e-6	0.0241009	2.98194e-4
chr21	36754047	36754146	18241661	0	-	0.343434	(0.33,0.36]	chr21	1547262	56	UTR3	UTR3:EXON_MRNA	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	4.10837	4.396985	4.6856	3.92435e-4	2.58508e-5	0.00583618	5.98505e-4
chr15	74845082	74845182	15375881	0	-	0.58	(0.53,0.59]	chr15	1215473	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	3.92573	4.39698	4.86823	4.35895e-4	8.62301e-5	0.00623608	0.00160749
chr8	33540184	33540261	9272202	0	+	0.545455	(0.53,0.59]	chr8	709765	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P18	ENSG00000253995.1	ENST00000519384.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	3.92573	4.39698	4.86823	4.35895e-4	8.62301e-5	0.00623608	0.00160749
chr9	121349187	121349255	10836505	0	-	0.514706	(0.49,0.53]	chr9	820998	2	CDS	CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.08487	4.396955	5.70904	6.09273e-4	2.30382e-6	0.00760626	8.86852e-5
chrX	48267050	48267148	18691158	0	+	0.377551	(0.36,0.39]	chrX	1593888	3	UTR3	UTR3:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	4.29063	4.396845	4.50306	1.8245e-6	1.8198e-7	7.35552e-5	9.38083e-6
chr1	100912111	100912174	379944	0	+	0.47619	(0.455,0.49]	chr1	36909	1	CDS	CDS:EXON_MRNA	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.0204	4.39679	4.77318	0.00736097	4.7888e-4	0.0490627	0.00628636
chr17	77215285	77215382	16362221	0	+	0.484536	(0.455,0.49]	chr17	1329013	14	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.0204	4.39679	4.77318	0.00736097	4.7888e-4	0.0490627	0.00628636
chr3	72929318	72929409	3555315	0	+	0.461538	(0.455,0.49]	chr3	308958	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	GXYLT2:FTH1P23	ENSG00000172986.13:ENSG00000242960.1	ENST00000389617.9:ENST00000498315.1:ENST00000492727.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	20	2	4.0204	4.39679	4.77318	0.00736097	4.7888e-4	0.0490627	0.00628636
chr8	63026157	63026226	9852024	0	-	0.478261	(0.455,0.49]	chr8	745340	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GGH	ENSG00000137563.13	ENST00000677482.1:ENST00000677459.1:ENST00000678069.1:ENST00000523788.2:ENST00000518466.6:ENST00000260118.7:ENST00000677919.1:ENST00000677327.1:ENST00000679326.1:ENST00000520609.5:ENST00000678045.1:ENST00000518113.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.0204	4.39679	4.77318	0.00736097	4.7888e-4	0.0490627	0.00628636
chr5	10262549	10262618	5874646	0	+	0.57971	(0.53,0.59]	chr5	461883	2	CDS	CDS:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000515676.5:ENST00000506600.1:ENST00000511995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.39416	4.39658	5.399	0.00126006	3.02387e-5	0.013837	6.78876e-4
chr11	44109193	44109283	11926216	0	+	0.533333	(0.53,0.59]	chr11	911528	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000529186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	94	2	4.37211	4.3964300000000005	4.42075	5.43864e-6	8.32123e-8	1.81467e-4	4.76997e-6
chr10	35569869	35569969	11009987	0	+	0.44	(0.42,0.455]	chr10	837264	8	UTR3	UTR3:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.77666	4.39614	5.01562	1.85215e-4	1.01971e-4	0.00296795	0.0019861
chr10	49819146	49819242	11483415	0	-	0.447917	(0.42,0.455]	chr10	876348	10	UTR3	UTR3:EXON_MRNA	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.77666	4.39614	5.01562	1.85215e-4	1.01971e-4	0.00296795	0.0019861
chr21	14373616	14373716	18163690	0	-	0.43	(0.42,0.455]	chr21	1542398	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.77666	4.39614	5.01562	1.85215e-4	1.01971e-4	0.00296795	0.0019861
chr4	106336954	106337041	5030812	0	+	0.425287	(0.42,0.455]	chr4	409500	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AIMP1	ENSG00000164022.18	ENST00000358008.7:ENST00000684504.1:ENST00000442366.6:ENST00000672341.1:ENST00000394701.6:ENST00000672337.1:ENST00000672003.1:ENST00000671868.1:ENST00000673123.1:ENST00000672911.1:ENST00000672328.1:ENST00000672285.1:ENST00000671960.1:ENST00000673381.2:ENST00000673018.1:ENST00000683179.1:ENST00000684019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.77666	4.39614	5.01562	1.85215e-4	1.01971e-4	0.00296795	0.0019861
chrX	110196253	110196352	19169123	0	-	0.424242	(0.42,0.455]	chrX	1630483	22	UTR3	UTR3:EXON_MRNA	AMMECR1	ENSG00000101935.11	ENST00000262844.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.77666	4.39614	5.01562	1.85215e-4	1.01971e-4	0.00296795	0.0019861
chr19	34393734	34393771	17300494	0	+	0.621622	(0.59,1]	chr19	1429872	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	126	2	2.77065	4.395474999999999	6.0203	1.24418e-4	1.68221e-5	0.00215999	4.64895e-4
chr17	1677629	1677694	16401573	0	-	0.630769	(0.59,1]	chr17	1334938	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.11647	4.39542	5.67437	0.00535979	6.83706e-5	0.0406564	0.00132577
chr1	145319019	145319105	1266434	0	-	0.5	(0.49,0.53]	chr1	124317	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF20	ENSG00000162825.16	ENST00000392971.6:ENST00000369373.9:ENST00000622803.4:ENST00000594479.7:ENST00000620821.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.8967	4.395375	4.89405	0.0128791	2.57983e-4	0.0725185	0.00419998
chr14	69703493	69703592	14374902	0	+	0.50505	(0.49,0.53]	chr14	1123258	2	CDS	CDS:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5:ENST00000556993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.8967	4.395375	4.89405	0.0128791	2.57983e-4	0.0725185	0.00419998
chr1	43360732	43360808	164219	0	+	0.565789	(0.53,0.59]	chr1	20859	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000478882.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	3.38538	4.395175	5.40497	1.18366e-4	2.83308e-5	0.00207204	7.12614e-4
chr10	70233380	70233434	11560929	0	-	0.703704	(0.59,1]	chr10	879682	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000625364.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	149	2	3.71084	4.395175	5.07951	3.89573e-5	1.95312e-7	9.32836e-4	9.96651e-6
chr19	38725813	38725903	17323717	0	+	0.566667	(0.53,0.59]	chr19	1434355	2	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	3.74289	4.394785000000001	5.04668	1.27332e-5	3.63266e-8	3.68625e-4	2.34568e-6
chr8	125018058	125018129	9595550	0	+	0.422535	(0.42,0.455]	chr8	727930	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000520493.1:ENST00000518604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.05889	4.394625	5.73036	0.00524205	2.37045e-6	0.0399155	8.28831e-5
chr1	55067054	55067153	1031125	0	-	0.50505	(0.49,0.53]	chr1	107103	8	UTR3	UTR3:EXON_MRNA	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.94177	4.394605	4.84744	0.0104929	3.70203e-4	0.063428	0.00515475
chr3	121494808	121494908	3699689	0	+	0.53	(0.49,0.53]	chr3	316099	8	EXON_PSEUDO	EXON_PSEUDO	RPL7AP11	ENSG00000242445.1	ENST00000486538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	3.94177	4.394605	4.84744	0.0104929	3.70203e-4	0.063428	0.00515475
chr8	56073694	56073706	9834814	0	-	0.5	(0.49,0.53]	chr8	744199	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000523936.5:ENST00000519606.5:ENST00000521289.5:ENST00000518875.5:ENST00000519369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.94177	4.394605	4.84744	0.0104929	3.70203e-4	0.063428	0.00515475
chr1	87106989	87107089	341437	0	+	0.32	(0.29,0.33]	chr1	33632	24	UTR3	UTR3:EXON_MRNA:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.47125	4.3945	5.31775	7.49757e-5	1.06766e-5	0.00142868	3.17854e-4
chr12	54408109	54408172	13343867	0	-	0.571429	(0.53,0.59]	chr12	1049828	1	CDS	CDS:UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	4.23022	4.394410000000001	4.5586	0.00161229	1.38676e-5	0.0169168	3.5918e-4
chr16	81476220	81476320	16055617	0	-	0.48	(0.455,0.49]	chr16	1289495	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP51	ENSG00000260229.1	ENST00000567149.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	33	2	3.81624	4.39441	4.97258	1.84876e-4	1.48205e-4	0.00296795	0.00269793
chr20	49949301	49949355	17814607	0	+	0.5	(0.49,0.53]	chr20	1506959	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	4.28332	4.39439	4.50546	0.00338762	1.89933e-6	0.0288632	6.87959e-5
chr21	43760820	43760919	18136206	0	+	0.535354	(0.53,0.59]	chr21	1538360	49	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.38347	4.39422	5.40497	0.00132446	2.83308e-5	0.0138834	7.12614e-4
chr3	125891272	125891372	4428922	0	-	0.53	(0.49,0.53]	chr3	367799	22	INTRON	INTRON	LINC02614	ENSG00000241288.8	ENST00000664857.1:ENST00000625484.1:ENST00000628013.2:ENST00000626334.1	lncRNA	lncRNA	lncRNA	lncRNA	26	671	2	3.41893	4.3942	5.36947	5.57756e-9	1e-12	5.1007e-7	2.25522e-10
chr4	77035100	77035198	4900537	0	+	0.469388	(0.455,0.49]	chr4	403559	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.56037	4.394155	5.22794	5.72551e-4	4.80556e-5	0.0078026	9.91058e-4
chr7	103535399	103535484	8963612	0	-	0.458824	(0.455,0.49]	chr7	686154	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.56037	4.394155	5.22794	5.72551e-4	4.80556e-5	0.0078026	9.91058e-4
chr2	131148362	131148461	2065742	0	+	0.383838	(0.36,0.39]	chr2	194095	17	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.58476	4.394035000000001	5.20331	5.01956e-4	2.53222e-5	0.00653592	6.51851e-4
chr12	113391047	113391144	13101765	0	+	0.443299	(0.42,0.455]	chr12	1022448	26	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	3.5762	4.393815	5.21143	1.07991e-6	4.3801e-9	4.27337e-5	4.12296e-7
chr6	147228153	147228253	7466669	0	+	0.35	(0.33,0.36]	chr6	571137	217	INTRON	INTRON	STXBP5	ENSG00000164506.14	ENST00000367481.7:ENST00000546097.5:ENST00000321680.10:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.38729	4.393625	5.39996	1.20567e-4	6.52649e-6	0.00210079	2.12073e-4
chr1	150966475	150966552	1291371	0	-	0.493506	(0.49,0.53]	chr1	128676	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	140	2	3.89368	4.39356	4.89344	4.1076e-6	4.28104e-11	1.44512e-4	6.40471e-9
chr3	155893517	155893608	3824202	0	+	0.527473	(0.49,0.53]	chr3	326151	1	CDS	CDS:EXON_MRNA:INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.8671	4.39355	5.92	0.0100489	6.89283e-7	0.0623334	2.91313e-5
chr5	77582935	77583028	6050211	0	+	0.430108	(0.42,0.455]	chr5	474660	7	EXON_PSEUDO	EXON_PSEUDO	RPL7P23	ENSG00000244363.3	ENST00000493874.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	60	2	4.02772	4.393355	4.75899	4.30844e-5	2.77134e-7	0.00100091	1.3349e-5
chr5	10407101	10407151	5875253	0	+	0.44	(0.42,0.455]	chr5	461995	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	76	2	4.28242	4.39327	4.50412	1.67683e-6	2.10422e-7	6.81279e-5	1.06041e-5
chr11	130141996	130142074	12207114	0	+	0.576923	(0.53,0.59]	chr11	942085	2	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000533860.5:ENST00000530493.1:ENST00000525604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	93	2	3.66389	4.393235	5.12258	2.13854e-5	1.9405e-8	5.67072e-4	1.37715e-6
chr19	10284032	10284128	17224629	0	+	0.666667	(0.59,1]	chr19	1418500	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000592686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.74795	4.393145	5.03834	0.00108238	4.30112e-4	0.0118355	0.00620274
chr17	48863247	48863347	16255731	0	+	0.47	(0.455,0.49]	chr17	1317495	3	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000448105.6:ENST00000258947.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.81275	4.392665	4.97258	0.0138827	1.84876e-4	0.0760883	0.00296795
chr4	14175494	14175594	4725505	0	+	0.48	(0.455,0.49]	chr4	392065	105	INTRON	INTRON	RP11-669M16.1	ENSG00000249988.1	ENST00000514863.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.81275	4.392665	4.97258	0.0138827	1.84876e-4	0.0760883	0.00296795
chr8	21999161	21999233	9222068	0	+	0.486111	(0.455,0.49]	chr8	705032	2	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000517551.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.81275	4.392665	4.97258	0.0138827	1.84876e-4	0.0760883	0.00296795
chr17	1678517	1678584	16401585	0	-	0.462687	(0.455,0.49]	chr17	1334945	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	75	2	4.15477	4.39264	4.63051	6.5205e-7	5.75142e-7	3.08344e-5	2.49635e-5
chr16	47311239	47311325	15931175	0	-	0.418605	(0.39,0.42]	chr16	1277776	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.19588	4.392455	5.58903	0.00321212	5.14263e-6	0.0280721	1.58468e-4
chr1	225411388	225411440	1528158	0	-	0.403846	(0.39,0.42]	chr1	152804	2	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	4.14477	4.3918	4.63883	5.68159e-4	2.09513e-5	0.0077844	5.04211e-4
chr19	23827061	23827161	17276784	0	+	0.5	(0.49,0.53]	chr19	1427762	177	INTRON	INTRON	ZNF726P1	ENSG00000233836.7	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	123	2	4.35228	4.3914349999999995	4.43059	5.78868e-8	8.30078e-9	3.85432e-6	6.60733e-7
chr1	35605232	35605282	938357	0	-	0.52	(0.49,0.53]	chr1	98700	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	4.11904	4.391375	4.66371	7.50378e-7	5.91374e-7	3.48685e-5	2.55031e-5
chr10	124408541	124408637	11729371	0	-	0.46875	(0.455,0.49]	chr10	895083	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000476917.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	4.34121	4.390995	4.44078	2.6997e-6	1.26641e-7	1.01511e-4	6.8458e-6
chr14	23126383	23126482	14529507	0	-	0.50505	(0.49,0.53]	chr14	1138639	12	UTR3	UTR3:EXON_MRNA	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.88731	4.39068	4.89405	2.57983e-4	4.40111e-6	0.00419998	1.3969e-4
chrX	40597564	40597664	18667543	0	+	0.47	(0.455,0.49]	chrX	1591859	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000436783.6:ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637930.1:ENST00000479120.2:ENST00000637140.1:ENST00000637793.1:ENST00000638046.1:ENST00000637019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	104	2	4.22226	4.39038	4.5585	1.23185e-5	1.0917e-9	3.58356e-4	1.1312e-7
chr22	37675635	37675702	18363161	0	+	0.597015	(0.59,1]	chr22	1561851	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	LGALS1	ENSG00000100097.12	ENST00000215909.10:ENST00000464120.1:ENST00000425542.5:ENST00000480207.5:ENST00000454173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	113	2	4.03263	4.390275	4.74792	1.11254e-4	1.6813e-6	0.00213212	6.18007e-5
chr14	63601584	63601661	14338381	0	+	0.441558	(0.42,0.455]	chr14	1120476	2	EXON_PSEUDO	EXON_PSEUDO	HSPE1P2	ENSG00000258645.2	ENST00000554777.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	43	2	2.99666	4.39023	5.7838	0.00104775	1.6512e-6	0.0123035	6.0825e-5
chr22	41526357	41526453	18381065	0	+	0.583333	(0.53,0.59]	chr22	1564620	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.64475	4.38992	6.13509	0.00453071	2.62487e-7	0.0351187	1.27527e-5
chr11	62765652	62765724	11973892	0	+	0.458333	(0.455,0.49]	chr11	917904	1	CDS	CDS:UTR3:EXON_MRNA	POLR2G	ENSG00000168002.12	ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.8036	4.389425	4.97525	1.59194e-4	1.38474e-4	0.00263091	0.00254294
chr6	160089106	160089179	7528802	0	+	0.589041	(0.53,0.59]	chr6	574938	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000475834.2:ENST00000677628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.3733	4.389135	5.40497	0.0529193	2.83308e-5	0.18423900000000001	7.12614e-4
chr17	59620131	59620173	16294808	0	+	0.5	(0.49,0.53]	chr17	1321599	1	CDS_START	CDS_START:CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.10199	4.38884	6.67569	0.00487463	1.65563e-9	0.0375573	1.6405e-7
chr6	53275089	53275175	7740237	0	-	0.581395	(0.53,0.59]	chr6	594357	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	161	2	4.26442	4.38874	4.51306	3.8713e-8	3.4487e-9	2.47685e-6	3.36293e-7
chr1	86903364	86903448	1144919	0	-	0.47619	(0.455,0.49]	chr1	113756	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	114	2	4.26097	4.38865	4.51633	2.48463e-8	1.78655e-8	1.84688e-6	1.28224e-6
chr3	128494617	128494716	3727948	0	+	0.363636	(0.36,0.39]	chr3	318583	42	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	4.15583	4.388624999999999	4.62142	1.9188e-5	7.26179e-7	4.68725e-4	3.39859e-5
chrX	49536823	49536886	18694761	0	+	0.587302	(0.53,0.59]	chrX	1594903	1	CDS	CDS:EXON_MRNA	GAGE12C	ENSG00000237671.3	ENST00000420398.2	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.81839	4.38832	4.95825	0.0184435	2.87508e-4	0.0945306	0.00457439
chr12	57233562	57233662	12902144	0	+	0.6	(0.59,1]	chr12	1005209	1	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1:ENST00000556798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	3.1314	4.388275	5.64515	6.69043e-4	1.07144e-4	0.00820018	0.00206452
chr2	221962605	221962702	2403284	0	+	0.494845	(0.49,0.53]	chr2	216413	10	EXON_PSEUDO	EXON_PSEUDO	HSPA9P1	ENSG00000226666.1	ENST00000432228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	3.42954	4.38822	5.3469	0.00105489	2.75121e-5	0.0123035	6.30607e-4
chr1	116961327	116961412	424931	0	+	0.576471	(0.53,0.59]	chr1	41943	2	CDS	CDS:EXON_MRNA	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.82407	4.388199999999999	4.95233	0.0179666	3.02711e-4	0.0918323	0.00439897
chr1	116967162	116967246	424991	0	+	0.535714	(0.53,0.59]	chr1	41949	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTGFRN	ENSG00000134247.10	ENST00000393203.3:ENST00000496699.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.82407	4.388199999999999	4.95233	0.0179666	3.02711e-4	0.0918323	0.00439897
chr16	30084665	30084760	15628542	0	+	0.610526	(0.59,1]	chr16	1239835	1	CDS	CDS:UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000563732.5:ENST00000279387.12:ENST00000563200.5:ENST00000566749.5:ENST00000562664.5:ENST00000627746.2:ENST00000562222.5:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	4.11672	4.388199999999999	4.65968	0.0222273	0.00413632	0.105595	0.0324998
chr17	1769950	1770050	16083750	0	+	0.67	(0.59,1]	chr17	1293227	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SERPINF1	ENSG00000132386.11	ENST00000571360.5:ENST00000254722.9:ENST00000571870.5:ENST00000576406.5:ENST00000573770.5:ENST00000571149.5:ENST00000570731.5:ENST00000577053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	27	2	4.11672	4.388199999999999	4.65968	0.0222273	0.00413632	0.105595	0.0324998
chr4	87390915	87390970	5518551	0	-	0.545455	(0.53,0.59]	chr4	441984	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.82407	4.388199999999999	4.95233	0.0179666	3.02711e-4	0.0918323	0.00439897
chr8	143021577	143021633	9647073	0	+	0.642857	(0.59,1]	chr8	730768	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	LY6E	ENSG00000160932.11	ENST00000517503.1:ENST00000429120.6:ENST00000521699.5:ENST00000520466.5:ENST00000520531.5:ENST00000292494.11:ENST00000522528.5:ENST00000521003.5:ENST00000522971.5:ENST00000519611.5:ENST00000521182.5:ENST00000519546.5:ENST00000523847.5:ENST00000522024.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.11672	4.388199999999999	4.65968	0.0222273	0.00413632	0.105595	0.0324998
chr9	137106688	137106760	10514726	0	+	0.611111	(0.59,1]	chr9	796997	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2:ENST00000683529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.11672	4.388199999999999	4.65968	0.0222273	0.00413632	0.105595	0.0324998
chr17	22204377	22204474	16168815	0	+	0.525773	(0.49,0.53]	chr17	1304328	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	8	194	2	4.28321	4.388025000000001	4.49284	2.00473e-7	1.44061e-11	1.13771e-5	2.41637e-9
chr1	180196743	180196840	582911	0	+	0.659794	(0.59,1]	chr1	60580	6	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5:ENST00000443059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	4.14483	4.387945	4.63106	0.0183207	0.00537945	0.0945306	0.0406564
chr16	87738877	87738976	16071806	0	-	0.59596	(0.59,1]	chr16	1291156	79	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.14483	4.387945	4.63106	0.0183207	0.00537945	0.0945306	0.0406564
chr9	36191214	36191273	10249752	0	+	0.864407	(0.59,1]	chr9	771341	2	CDS	CDS:EXON_MRNA	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000466396.5:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.14483	4.387945	4.63106	0.0183207	0.00537945	0.0945306	0.0406564
chr19	28615129	28615229	17280946	0	+	0.48	(0.455,0.49]	chr19	1428124	28	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1	lncRNA	lncRNA	lncRNA	lncRNA	7	119	2	3.31716	4.387375	5.45759	9.7817e-7	6.20166e-10	4.35358e-5	6.84699e-8
chr1	166854078	166854177	519999	0	+	0.40404	(0.39,0.42]	chr1	55860	38	UTR3	UTR3:EXON_MRNA	POGK	ENSG00000143157.12	ENST00000367876.9:ENST00000367875.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.28128	4.3872599999999995	4.49324	0.00342611	0.00108192	0.0283456	0.0124943
chr1	15807373	15807473	867308	0	-	0.44	(0.42,0.455]	chr1	88161	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UQCRHL	ENSG00000233954.6	ENST00000483273.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.97371	4.387175	4.80064	3.0479e-4	6.07552e-5	0.00472028	0.00121305
chr15	50228944	50229042	14925620	0	+	0.44898	(0.42,0.455]	chr15	1173448	1	CDS	CDS:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8:ENST00000544960.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.97371	4.387175	4.80064	3.0479e-4	6.07552e-5	0.00472028	0.00121305
chr12	115960866	115960966	13554950	0	-	0.47	(0.455,0.49]	chr12	1066994	24	UTR3	UTR3:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648762.1:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000649937.1:ENST00000548784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.26593	4.38699	4.50805	0.00372962	0.00122223	0.0302984	0.0135383
chr6	108679924	108680023	7323114	0	+	0.464646	(0.455,0.49]	chr6	562727	2	UTR3	UTR3:EXON_MRNA	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2:ENST00000540898.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.26593	4.38699	4.50805	0.00372962	0.00122223	0.0302984	0.0135383
chr8	140523151	140523251	10132074	0	-	0.49	(0.455,0.49]	chr8	760954	31	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.26593	4.38699	4.50805	0.00372962	0.00122223	0.0302984	0.0135383
chrX	68522759	68522838	18720585	0	+	0.455696	(0.455,0.49]	chrX	1597219	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.26593	4.38699	4.50805	0.00372962	0.00122223	0.0302984	0.0135383
chr2	47463030	47463092	1785112	0	+	0.33871	(0.33,0.36]	chr2	172491	1	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.1284	4.386965	4.64553	0.00407303	6.69086e-4	0.0324137	0.00820018
chr2	189563674	189563766	3082420	0	-	0.347826	(0.33,0.36]	chr2	272317	2	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.1284	4.386965	4.64553	0.00407303	6.69086e-4	0.0324137	0.00820018
chr20	1165366	1165462	17645638	0	+	0.354167	(0.33,0.36]	chr20	1491534	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000246015.8:ENST00000335877.11:ENST00000484891.1:ENST00000381898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.1284	4.386965	4.64553	0.00407303	6.69086e-4	0.0324137	0.00820018
chr7	150373844	150373944	8614897	0	+	0.35	(0.33,0.36]	chr7	657739	10	UTR3	UTR3:EXON_MRNA:INTRON	REPIN1:ZNF775	ENSG00000214022.12:ENSG00000196456.13	ENST00000479668.5:ENST00000478789.5:ENST00000397281.6:ENST00000444957.3:ENST00000489432.7:ENST00000425389.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.1284	4.386965	4.64553	0.00407303	6.69086e-4	0.0324137	0.00820018
chrX	120526261	120526361	19196670	0	-	0.35	(0.33,0.36]	chrX	1632024	205	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000679965.1:ENST00000681263.1:ENST00000681706.1:ENST00000681908.1:ENST00000681652.1:ENST00000681487.1:ENST00000679432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.1284	4.386965	4.64553	0.00407303	6.69086e-4	0.0324137	0.00820018
chr2	190984309	190984393	3087941	0	-	0.47619	(0.455,0.49]	chr2	272887	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2:ENST00000361099.8:ENST00000540176.6:ENST00000674081.1:ENST00000674028.1:ENST00000673858.1:ENST00000423282.2:ENST00000673863.1:ENST00000673942.1:ENST00000673777.1:ENST00000673734.1:ENST00000409465.5:ENST00000674080.1:ENST00000673952.1:ENST00000674153.1:ENST00000673841.1:ENST00000392322.7:ENST00000452281.6:ENST00000673885.1:ENST00000392323.6:ENST00000673859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chr3	47423988	47424045	4160786	0	-	0.473684	(0.455,0.49]	chr3	348146	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chr3	121911573	121911666	3701007	0	+	0.483871	(0.455,0.49]	chr3	316230	1	CDS	CDS:EXON_MRNA:INTRON	SLC15A2	ENSG00000163406.11	ENST00000489711.6:ENST00000295605.6:ENST00000469013.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chr7	105113233	105113333	8449890	0	+	0.49	(0.455,0.49]	chr7	645367	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chr7	109959313	109959410	8994205	0	-	0.474227	(0.455,0.49]	chr7	688314	2	EXON_PSEUDO	EXON_PSEUDO	EIF3IP1	ENSG00000237064.1	ENST00000433048.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chr7	130135407	130135506	8529079	0	+	0.464646	(0.455,0.49]	chr7	651128	48	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chrX	68071287	68071383	19098341	0	-	0.46875	(0.455,0.49]	chrX	1624707	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	OPHN1:PGK1P1	ENSG00000079482.14:ENSG00000228328.2	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1:ENST00000426382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	0	19	2	4.36307	4.38674	4.41041	0.00218771	0.00218641	0.0208941	0.0202707
chr5	138947387	138947473	6862743	0	-	0.616279	(0.59,1]	chr5	525289	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000515008.1:ENST00000509534.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	4.23031	4.38607	4.54183	0.0070583	3.46639e-5	0.0478044	7.61275e-4
chrX	141906506	141906605	18883531	0	+	0.515152	(0.49,0.53]	chrX	1608997	12	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.60653	4.38605	5.16557	4.50981e-4	6.36135e-5	0.00605268	0.00136069
chr11	6613952	6614051	12249915	0	-	0.383838	(0.36,0.39]	chr11	946834	13	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	8	151	2	4.17566	4.38591	4.59616	4.80907e-9	6.97787e-11	4.46041e-7	9.89214e-9
chrX	120560193	120560293	19197056	0	-	0.44	(0.42,0.455]	chrX	1632160	1	CDS_START	CDS_START:CDS:EXON_MRNA	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000336592.11:ENST00000681333.1:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000681090.1:ENST00000681652.1:ENST00000679432.1:ENST00000404115.8:ENST00000467641.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	4.09155	4.38568	4.67981	5.38444e-4	2.98142e-5	0.00744072	6.7355e-4
chr1	201007280	201007379	1445390	0	-	0.494949	(0.49,0.53]	chr1	144921	12	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.69037	4.38549	5.08061	0.0226513	1.00361e-4	0.10505	0.00196575
chr11	5341362	5341462	12241506	0	-	0.39	(0.36,0.39]	chr11	946158	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	3.20198	4.3853	5.56862	4.4092e-4	4.90567e-6	0.0062930699999999996	1.526e-4
chr17	82850619	82850719	16386368	0	+	0.54	(0.53,0.59]	chr17	1332978	41	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.99819	4.385205	4.77222	0.0111308	6.67251e-4	0.0665375	0.00867533
chr2	27038758	27038815	1690652	0	+	0.54386	(0.53,0.59]	chr2	165351	2	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000425720.5:ENST00000444135.5:ENST00000434544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.99819	4.385205	4.77222	0.0111308	6.67251e-4	0.0665375	0.00867533
chr20	56518265	56518363	17835546	0	+	0.581633	(0.53,0.59]	chr20	1508017	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RTF2:FAM209A	ENSG00000022277.13:ENSG00000124103.10	ENST00000023939.8:ENST00000395881.7:ENST00000357348.10:ENST00000477573.1:ENST00000481560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.99819	4.385205	4.77222	0.0111308	6.67251e-4	0.0665375	0.00867533
chr1	19219302	19219402	877131	0	-	0.52	(0.49,0.53]	chr1	90424	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000461353.1:ENST00000486405.1:ENST00000486238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	4.25722	4.3851700000000005	4.51312	0.00156636	1.00699e-5	0.0156889	3.03291e-4
chr1	45002919	45003015	973521	0	-	0.541667	(0.53,0.59]	chr1	102742	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HECTD3	ENSG00000126107.15	ENST00000372168.7:ENST00000486132.5:ENST00000372172.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr11	67482975	67483066	11996843	0	+	0.582418	(0.53,0.59]	chr11	923108	3	UTR5	UTR5:EXON_MRNA	AIP	ENSG00000110711.11	ENST00000682699.1:ENST00000279146.8:ENST00000528641.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr14	64442109	64442165	14344059	0	+	0.535714	(0.53,0.59]	chr14	1121353	2	CDS	CDS:EXON_MRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000556771.5:ENST00000553405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr17	44378642	44378710	16558065	0	-	0.573529	(0.53,0.59]	chr17	1359454	1	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr19	16555233	16555315	17491611	0	-	0.548781	(0.53,0.59]	chr19	1466506	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1:ENST00000421082.1:ENST00000469055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr19	19645929	19645985	17504342	0	-	0.535714	(0.53,0.59]	chr19	1469150	2	CDS	CDS:EXON_MRNA	ATP13A1	ENSG00000105726.17	ENST00000357324.11:ENST00000467160.1:ENST00000291503.9:ENST00000473243.5:ENST00000497556.5:ENST00000469641.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr19	39489820	39489918	17326817	0	+	0.571429	(0.53,0.59]	chr19	1435101	1	UTR3	UTR3:EXON_MRNA	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000595961.5:ENST00000601252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr3	49532811	49532907	3460756	0	+	0.541667	(0.53,0.59]	chr3	302127	22	CDS	CDS:EXON_MRNA	DAG1	ENSG00000173402.12	ENST00000515359.6:ENST00000538711.5:ENST00000539901.5:ENST00000541308.5:ENST00000545947.5:ENST00000308775.7:ENST00000673708.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.00393	4.38513	4.76633	0.0108084	6.98999e-4	0.064368	0.00846751
chr3	13351878	13351929	4046567	0	-	0.627451	(0.59,1]	chr3	339625	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000479519.5:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.51608	4.38494	5.2538	0.00108676	5.85045e-4	0.0118659	0.00793559
chr7	100627906	100627974	8952235	0	-	0.514706	(0.49,0.53]	chr7	684168	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	3.60476	4.3849100000000005	5.16506	4.52633e-4	9.90322e-9	0.00642319	7.695e-7
chr13	108853947	108854046	13890640	0	+	0.424242	(0.42,0.455]	chr13	1088566	91	INTRON	INTRON	MYO16	ENSG00000041515.16	ENST00000356711.7:ENST00000251041.10:ENST00000457511.7:ENST00000375857.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.0898	4.384805	4.67981	0.00698074	5.38444e-4	0.0473262	0.00744072
chr16	69191122	69191172	15722111	0	+	0.44	(0.42,0.455]	chr16	1251889	1	EXON_SMALL	EXON_SMALL:INTRON	UTP4:SNTB2:Y_RNA	ENSG00000141076.18:ENSG00000168807.16:ENSG00000200164.1	ENST00000567287.2:ENST00000336278.8:ENST00000467311.5:ENST00000525632.5:ENST00000524887.5:ENST00000360496.5:ENST00000528525.1:ENST00000363294.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.0898	4.384805	4.67981	0.00698074	5.38444e-4	0.0473262	0.00744072
chr7	97872350	97872446	8940824	0	-	0.677083	(0.59,1]	chr7	682294	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000453600.5:ENST00000451771.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	61	2	4.13851	4.384785	4.63106	0.00537945	5.66622e-5	0.0406564	0.00114182
chr10	118933117	118933206	11716195	0	-	0.505618	(0.49,0.53]	chr10	893738	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-498J9.2:LDHAP5	ENSG00000229272.2:ENSG00000213574.2	ENST00000663084.1:ENST00000394996.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	38	2	2.99849	4.384565	5.77064	0.00630123	1.94063e-6	0.0445415	6.9799e-5
chrX	101391458	101391511	18786341	0	+	0.509434	(0.49,0.53]	chrX	1601410	1	CDS	CDS:UTR5:EXON_MRNA	RPL36A:RPL36A-HNRNPH2	ENSG00000241343.10:ENSG00000257529.5	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000409338.5:ENST00000553110.8:ENST00000465340.5:ENST00000491851.5:ENST00000409170.3:ENST00000372849.8:ENST00000465744.5:ENST00000471855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	262	2	4.26198	4.38442	4.50686	2.01555e-10	2.37543e-11	2.80661e-8	3.76874e-9
chrX	39787587	39787679	19044754	0	-	0.543478	(0.53,0.59]	chrX	1618678	6	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	93	2	4.37211	4.384415000000001	4.39672	5.43864e-6	1.01252e-7	1.81467e-4	5.63487e-6
chr1	160428270	160428370	497173	0	+	0.5	(0.49,0.53]	chr1	53568	30	UTR3	UTR3:EXON_MRNA	VANGL2	ENSG00000162738.6	ENST00000368061.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.73494	4.384375	5.03381	0.0189345	1.49689e-4	0.0934721	0.0024973
chr10	95621030	95621103	11633020	0	-	0.493151	(0.49,0.53]	chr10	886019	1	CDS	CDS:EXON_MRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.73494	4.384375	5.03381	0.0189345	1.49689e-4	0.0934721	0.0024973
chr11	66285700	66285756	12423989	0	-	0.517857	(0.49,0.53]	chr11	964484	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	YIF1A	ENSG00000174851.16	ENST00000359461.10:ENST00000376901.9:ENST00000471387.6:ENST00000526497.5:ENST00000484814.1:ENST00000431556.6:ENST00000528575.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.73494	4.384375	5.03381	0.0189345	1.49689e-4	0.0934721	0.0024973
chr9	122144148	122144240	10840112	0	-	0.521739	(0.49,0.53]	chr9	821151	2	UTR3	UTR3:EXON_MRNA	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.73494	4.384375	5.03381	0.0189345	1.49689e-4	0.0934721	0.0024973
chr5	125758940	125759040	6802319	0	-	0.36	(0.33,0.36]	chr5	521055	1089	INTRON	INTRON	RP11-114J13.1	ENSG00000248752.3	ENST00000651847.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	4.1284	4.38406	4.63972	0.00407303	6.04873e-7	0.0324137	2.60562e-5
chr17	7311069	7311122	16103927	0	+	0.45283	(0.42,0.455]	chr17	1296300	2	CDS	CDS:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	3.77911	4.384055	4.989	1.86147e-7	4.29924e-8	1.07114e-5	2.69981e-6
chr17	79112325	79112424	16698710	0	-	0.616162	(0.59,1]	chr17	1376390	52	INTRON	INTRON	RBFOX3	ENSG00000167281.19	ENST00000583458.5:ENST00000648001.1:ENST00000582043.5:ENST00000580155.5:ENST00000584778.5	protein_coding	protein_coding	protein_coding	protein_coding	5	124	2	3.16566	4.383655	5.60165	1.30928e-4	2.21406e-5	0.00243846	5.2795e-4
chr1	64985199	64985297	1074564	0	-	0.44898	(0.42,0.455]	chr1	109760	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	JAK1:LINC01359:SLC2A3P2	ENSG00000162434.13:ENSG00000226891.9:ENSG00000185031.6	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1:ENST00000447748.5:ENST00000635398.1:ENST00000635626.1:ENST00000634604.2:ENST00000666562.1:ENST00000634775.1:ENST00000654678.1:ENST00000658189.1:ENST00000647968.1:ENST00000654680.1:ENST00000668343.1:ENST00000415842.5:ENST00000669029.1:ENST00000654707.1:ENST00000664673.1:ENST00000444349.6:ENST00000663993.1:ENST00000331747.6	protein_coding	protein_coding	protein_coding:lncRNA:processed_pseudogene	protein_coding:retained_intron:lncRNA:processed_pseudogene	0	19	2	4.24133	4.383635	4.52594	0.00326918	0.00144145	0.0282494	0.0147046
chr18	31091027	31091072	17058595	0	-	0.422222	(0.42,0.455]	chr18	1401853	1	CDS_START	CDS_START:CDS:EXON_MRNA	DSC2	ENSG00000134755.18	ENST00000251081.8:ENST00000280904.11:ENST00000648081.1:ENST00000682357.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.24133	4.383635	4.52594	0.00326918	0.00144145	0.0282494	0.0147046
chr2	121605990	121606085	2863189	0	-	0.431579	(0.42,0.455]	chr2	255650	2	UTR5	UTR5:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.24133	4.383635	4.52594	0.00326918	0.00144145	0.0282494	0.0147046
chr2	161385517	161385571	2165135	0	+	0.425926	(0.42,0.455]	chr2	199385	2	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.24133	4.383635	4.52594	0.00326918	0.00144145	0.0282494	0.0147046
chr2	240022255	240022340	3246007	0	-	0.447059	(0.42,0.455]	chr2	286093	2	CDS	CDS:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1:ENST00000407129.3:ENST00000497536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.24133	4.383635	4.52594	0.00326918	0.00144145	0.0282494	0.0147046
chr1	161362333	161362433	500104	0	+	0.53	(0.49,0.53]	chr1	54182	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	4.03034	4.38355	4.73676	4.26396e-5	3.38109e-7	9.97006e-4	1.5857e-5
chr9	89450654	89450754	10350193	0	+	0.39	(0.36,0.39]	chr9	779106	12	EXON_PSEUDO	EXON_PSEUDO	PA2G4P6	ENSG00000231799.2	ENST00000438325.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	44	2	2.38564	4.38346	6.38128	0.0476159	1.07346e-8	0.17993	8.24229e-7
chr8	140527647	140527747	10132119	0	-	0.39	(0.36,0.39]	chr8	760954	76	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	4.07544	4.3834	4.69136	3.61377e-5	4.2098e-7	8.73633e-4	1.91066e-5
chr15	52551234	52551334	15287500	0	-	0.35	(0.33,0.36]	chr15	1206631	43	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000568196.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.56761	4.383185	5.19876	2.37278e-5	5.36554e-6	6.1689e-4	1.64061e-4
chr1	203723934	203723988	669715	0	+	0.537037	(0.53,0.59]	chr1	67490	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000458092.5:ENST00000466407.1:ENST00000356729.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.80806	4.3831549999999995	4.95825	2.87508e-4	1.65022e-4	0.00457439	0.00269147
chr2	99181183	99181249	1952143	0	+	0.530303	(0.53,0.59]	chr2	185422	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-111H13.1:RP11-38C17.1:MRPL30	ENSG00000241962.9:ENSG00000273155.1:ENSG00000185414.20	ENST00000424491.5:ENST00000410042.1:ENST00000473743.5:ENST00000338148.8:ENST00000409145.5:ENST00000465432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	3.80806	4.3831549999999995	4.95825	2.87508e-4	1.65022e-4	0.00457439	0.00269147
chr4	73078807	73078890	5465996	0	-	0.53012	(0.53,0.59]	chr4	437738	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000510127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.80806	4.3831549999999995	4.95825	2.87508e-4	1.65022e-4	0.00457439	0.00269147
chr7	32490365	32490464	8757910	0	-	0.575758	(0.53,0.59]	chr7	668036	1	UTR5	UTR5:EXON_MRNA:INTRON	LSM5	ENSG00000106355.10	ENST00000450169.7:ENST00000409909.7:ENST00000223084.7:ENST00000409987.5:ENST00000409782.5:ENST00000409952.3:ENST00000480956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.80806	4.3831549999999995	4.95825	2.87508e-4	1.65022e-4	0.00457439	0.00269147
chr10	74136631	74136717	11575970	0	-	0.360465	(0.36,0.39]	chr10	881704	1	CDS	CDS:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	3.56246	4.382885	5.20331	2.53222e-5	5.49224e-6	6.51851e-4	1.67232e-4
chrX	47659107	47659180	19061155	0	-	0.616438	(0.59,1]	chrX	1620046	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000376964.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.97118	4.38284	4.7945	0.0031766	1.3379e-4	0.0279054	0.00229039
chr4	48851805	48851892	4827453	0	+	0.37931	(0.36,0.39]	chr4	397841	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000505922.6:ENST00000512981.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	149	2	3.78004	4.382685	4.98533	5.14688e-8	1.11687e-11	3.48023e-6	1.91666e-9
chr17	63583571	63583641	16317487	0	+	0.542857	(0.53,0.59]	chr17	1323657	2	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	3.12943	4.382085	5.63474	4.81557e-4	7.53339e-6	0.00677016	2.17987e-4
chr4	94575698	94575782	4984358	0	+	0.52381	(0.49,0.53]	chr4	407384	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	3.4415	4.381645	5.32179	9.98297e-4	2.63311e-5	0.0111246	6.73425e-4
chr4	75665613	75665711	5473098	0	-	0.387755	(0.36,0.39]	chr4	438438	24	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	4.32265	4.381335	4.44002	6.3224e-6	2.93008e-6	1.88366e-4	1.09386e-4
chr1	114707950	114708050	1239485	0	-	0.54	(0.53,0.59]	chr1	121309	36	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.7898	4.38116	5.97252	0.0128364	8.30115e-7	0.0719798	3.4056e-5
chr1	180194302	180194392	582886	0	+	0.644444	(0.59,1]	chr1	60574	2	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.67996	4.38114	6.08232	0.00470478	8.23309e-6	0.0363963	2.34786e-4
chr3	49025125	49025197	4171679	0	-	0.541667	(0.53,0.59]	chr3	350221	1	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000466147.5:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000484872.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000481274.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.51602	4.3810199999999995	6.24602	0.00264912	1.15746e-7	0.024013	6.3314e-6
chr17	48841707	48841807	16255486	0	+	0.47	(0.455,0.49]	chr17	1317412	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000510356.5:ENST00000372317.7:ENST00000576582.5:ENST00000511697.1:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.12843	4.380875	5.63332	0.00392855	4.15159e-6	0.0322851	1.32627e-4
chrX	53548101	53548187	19077324	0	-	0.488372	(0.455,0.49]	chrX	1622706	6	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.00069	4.380585	4.76048	3.99985e-4	5.13615e-5	0.00588767	0.00104999
chr1	201969924	201970016	661852	0	+	0.326087	(0.29,0.33]	chr1	66404	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	3.72441	4.380255	5.0361	3.14095e-6	2.13226e-8	1.15953e-4	1.48722e-6
chr1	2308439	2308538	7390	0	+	0.454545	(0.42,0.455]	chr1	1667	18	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.71365	4.380225	5.0468	2.63375e-4	1.33918e-4	0.00427022	0.00229039
chr17	37458587	37458687	16213796	0	+	0.43	(0.42,0.455]	chr17	1310009	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	3.71365	4.380225	5.0468	2.63375e-4	1.33918e-4	0.00427022	0.00229039
chr1	23019779	23019863	97130	0	+	0.77381	(0.59,1]	chr1	11197	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.56392	4.3802	5.19648	8.86707e-4	7.35336e-4	0.0101815	0.00921643
chr3	14466582	14466650	3320635	0	+	0.617647	(0.59,1]	chr3	292239	2	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.26579	4.3802	6.49461	0.00263137	1.19255e-6	0.0231864	5.10538e-5
chr19	14407144	14407229	17242516	0	+	0.552941	(0.53,0.59]	chr19	1421863	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.02054	4.380055	5.73957	0.00577011	3.90343e-6	0.0426551	1.26306e-4
chr11	18396942	18396968	11831440	0	+	0.423077	(0.42,0.455]	chr11	905993	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000469976.2:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000535451.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	132	2	4.32432	4.37998	4.43564	8.39391e-9	3.69802e-9	7.30526e-7	3.27788e-7
chr6	7281739	7281838	7586809	0	-	0.383838	(0.36,0.39]	chr6	578692	7	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	3.36872	4.379885	5.39105	1.31092e-4	7.73826e-6	0.00226268	2.43421e-4
chr2	152734993	152735059	2139271	0	+	0.424242	(0.42,0.455]	chr2	198144	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000455875.5:ENST00000425034.5:ENST00000463690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	3.17397	4.379805	5.58564	0.0031821	3.24669e-6	0.0267094	1.18495e-4
chr13	46144441	46144520	14009791	0	-	0.481013	(0.455,0.49]	chr13	1098523	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.24913	4.37978	5.51043	0.00239443	9.08728e-6	0.0225356	2.53877e-4
chr2	3575609	3575684	1616633	0	+	0.586667	(0.53,0.59]	chr2	160392	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000479123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	234	2	4.15409	4.3797250000000005	4.60536	2.31267e-9	1.32948e-10	2.18777e-7	1.9378399999999998e-08
chr1	202750658	202750718	1451954	0	-	0.4	(0.39,0.42]	chr1	145841	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1:ENST00000649929.1:ENST00000647754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.1206	4.379714999999999	4.63883	0.00597537	5.68159e-4	0.0428562	0.0077844
chr12	14502732	14502831	12745544	0	+	0.40404	(0.39,0.42]	chr12	990817	48	UTR3	UTR3:EXON_MRNA	ATF7IP	ENSG00000171681.13	ENST00000261168.9:ENST00000536444.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.1206	4.379714999999999	4.63883	0.00597537	5.68159e-4	0.0428562	0.0077844
chr12	53142143	53142235	12885184	0	+	0.391304	(0.39,0.42]	chr12	1002038	2	EXON_PSEUDO	EXON_PSEUDO	HIGD1AP1	ENSG00000258016.1	ENST00000550979.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.1206	4.379714999999999	4.63883	0.00597537	5.68159e-4	0.0428562	0.0077844
chr16	81711467	81711565	15772104	0	+	0.428571	(0.42,0.455]	chr16	1255597	18	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	11	225	2	4.28731	4.37958	4.47185	1.17662e-10	3.75369e-11	1.568e-8	6.29249e-9
chr3	9976956	9977050	4031314	0	-	0.37234	(0.36,0.39]	chr3	338406	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1:ENST00000429759.5:ENST00000470827.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	106	2	3.66725	4.37932	5.09139	3.16233e-6	1.0328e-10	1.16228e-4	1.39824e-8
chr8	38210007	38210103	9292326	0	+	0.479167	(0.455,0.49]	chr8	710693	1	CDS	CDS:EXON_MRNA	BAG4	ENSG00000156735.11	ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	4.1185600000000004	4.37917	4.63978	6.94032e-4	2.49433e-5	0.00876781	5.8178e-4
chr1	107058229	107058326	388493	0	+	0.412371	(0.39,0.42]	chr1	37653	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PRMT6	ENSG00000198890.9	ENST00000370078.2:ENST00000650338.1:ENST00000649727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.3313	4.37857	4.42584	0.00209984	0.00199429	0.0204266	0.0189001
chr12	7814125	7814220	13192349	0	-	0.410526	(0.39,0.42]	chr12	1033373	18	UTR3	UTR3:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.3313	4.37857	4.42584	0.00209984	0.00199429	0.0204266	0.0189001
chr5	60754778	60754833	6607881	0	-	0.418182	(0.39,0.42]	chr5	510702	2	CDS	CDS:UTR3:EXON_MRNA	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000504455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.3313	4.37857	4.42584	0.00209984	0.00199429	0.0204266	0.0189001
chr8	90019085	90019172	9473331	0	+	0.413793	(0.39,0.42]	chr8	720733	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1:ENST00000524326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.3313	4.37857	4.42584	0.00209984	0.00199429	0.0204266	0.0189001
chr10	69104020	69104120	11094164	0	+	0.43	(0.42,0.455]	chr10	843405	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	164	2	3.89402	4.3784849999999995	4.86295	1.87611e-8	3.34454e-11	1.34017e-6	5.66113e-9
chr12	6976272	6976360	13188924	0	-	0.5	(0.49,0.53]	chr12	1032820	2	UTR3	UTR3:EXON_MRNA	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.07719	4.378455	4.67972	0.0074411	6.94757e-4	0.0492519	0.00876781
chr14	24193002	24193091	14534242	0	-	0.516854	(0.49,0.53]	chr14	1139707	5	CDS	CDS:EXON_MRNA:INTRON	TM9SF1:RP11-468E2.1	ENSG00000100926.15:ENSG00000254692.1	ENST00000261789.9:ENST00000528669.5:ENST00000530611.1:ENST00000529332.5:ENST00000524835.5:ENST00000532632.1:ENST00000396854.8:ENST00000531406.1:ENST00000528895.5:ENST00000530563.1:ENST00000530468.5:ENST00000525592.1:ENST00000528010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.07719	4.378455	4.67972	0.0074411	6.94757e-4	0.0492519	0.00876781
chr14	69455731	69455798	14373427	0	+	0.492537	(0.49,0.53]	chr14	1123173	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC39A9	ENSG00000029364.12	ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1:ENST00000554023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.07719	4.378455	4.67972	0.0074411	6.94757e-4	0.0492519	0.00876781
chr16	81540564	81540664	15770350	0	+	0.5	(0.49,0.53]	chr16	1255454	62	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.07719	4.378455	4.67972	0.0074411	6.94757e-4	0.0492519	0.00876781
chr17	41892362	41892447	16544007	0	-	0.505882	(0.49,0.53]	chr17	1356518	2	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.07719	4.378455	4.67972	0.0074411	6.94757e-4	0.0492519	0.00876781
chr13	113321403	113321470	13908396	0	+	0.432836	(0.42,0.455]	chr13	1090355	1	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	3.08182	4.37834	5.67486	6.80627e-4	3.42598e-6	0.00876781	1.12506e-4
chr1	10419749	10419844	39915	0	+	0.547368	(0.53,0.59]	chr1	4839	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000498356.1:ENST00000496718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	90	2	3.81779	4.37831	4.93883	7.68216e-6	8.67024e-8	2.4235e-4	4.94425e-6
chr3	52256010	52256108	4182615	0	-	0.489796	(0.455,0.49]	chr3	352627	17	UTR3	UTR3:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	3.31171	4.378265	5.44482	1.87327e-4	1.36044e-5	0.00325006	3.54469e-4
chr11	7987261	7987352	11789410	0	+	0.461538	(0.455,0.49]	chr11	902498	5	UTR5	UTR5:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	104	2	2.96139	4.378255	5.79512	2.95549e-4	2.24235e-11	0.00467597	3.58217e-9
chr7	100095993	100096080	8949653	0	-	0.632184	(0.59,1]	chr7	683525	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	87	2	2.70668	4.378165	6.04965	0.0014458	9.85057e-6	0.0155288	2.72926e-4
chr1	37999312	37999412	950350	0	-	0.52	(0.49,0.53]	chr1	100167	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5:ENST00000483132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr1	202964611	202964695	1453395	0	-	0.52381	(0.49,0.53]	chr1	146115	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYB5R1	ENSG00000159348.13	ENST00000367249.9:ENST00000497655.1:ENST00000482572.5:ENST00000446185.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr17	57507245	57507345	16285305	0	+	0.5	(0.49,0.53]	chr17	1320794	196	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr19	41584046	41584146	17335751	0	+	0.52	(0.49,0.53]	chr19	1437024	3	SS3_PROX	SS3_PROX:INTRON	CEACAM21	ENSG00000007129.18	ENST00000407170.6:ENST00000482870.6:ENST00000401445.4:ENST00000457737.5:ENST00000187608.13:ENST00000632983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr22	18126644	18126742	18291824	0	+	0.520408	(0.49,0.53]	chr22	1552231	4	CDS	CDS:UTR3:EXON_MRNA	AC008079.12:TUBA8	ENSG00000288683.1:ENSG00000183785.16	ENST00000474897.6:ENST00000679963.1:ENST00000680175.1:ENST00000316027.10:ENST00000330423.8:ENST00000416740.2:ENST00000679481.1:ENST00000608634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr7	100091789	100091888	8425367	0	+	0.50505	(0.49,0.53]	chr7	642477	1	UTR3	UTR3:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000426712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr8	11853328	11853354	9699307	0	-	0.5	(0.49,0.53]	chr8	734853	1	CDS	CDS:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000525315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr8	97066008	97066075	9504724	0	+	0.492537	(0.49,0.53]	chr8	722636	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000522617.3:ENST00000529551.1:ENST00000532528.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr9	120437449	120437527	10830805	0	-	0.512821	(0.49,0.53]	chr9	820207	3	CDS	CDS:UTR3:EXON_MRNA	CDK5RAP2	ENSG00000136861.18	ENST00000360822.7:ENST00000349780.9:ENST00000360190.8:ENST00000473282.6:ENST00000480112.5:ENST00000416449.5:ENST00000425647.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chrX	71562846	71562931	18733032	0	+	0.494118	(0.49,0.53]	chrX	1598819	1	CDS	CDS:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.12263	4.378005	4.63338	0.00591451	9.56909e-4	0.0427941	0.010724
chr10	121502028	121502125	11721525	0	-	0.536082	(0.53,0.59]	chr10	894361	7	INTRON	INTRON	FGFR2	ENSG00000066468.24	ENST00000358487.10:ENST00000613048.4:ENST00000357555.9:ENST00000369061.8:ENST00000683211.1:ENST00000682550.1:ENST00000351936.11:ENST00000683418.1:ENST00000682772.1:ENST00000638709.2:ENST00000682296.1:ENST00000682904.1:ENST00000684516.1:ENST00000683250.1:ENST00000478859.5:ENST00000684153.1:ENST00000356226.8:ENST00000369060.8:ENST00000604236.5:ENST00000369059.5:ENST00000429361.5:ENST00000457416.6:ENST00000346997.6:ENST00000360144.7:ENST00000369056.5:ENST00000369058.7:ENST00000336553.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	249	2	3.13428	4.37776	5.62124	1.10636e-5	1e-12	3.28953e-4	2.25522e-10
chr3	43555277	43555373	4145438	0	-	0.40625	(0.39,0.42]	chr3	346439	1	CDS	CDS:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.18155	4.37776	6.57397	0.0283931	2.74698e-9	0.127654	2.54234e-7
chr13	99541612	99541667	13865436	0	+	0.381818	(0.36,0.39]	chr13	1087188	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000466555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.18642	4.3775200000000005	5.56862	0.00359152	4.90567e-6	0.0302391	1.526e-4
chrX	120626687	120626782	19197524	0	-	0.368421	(0.36,0.39]	chrX	1632210	5	CDS	CDS:EXON_MRNA	C1GALT1C1	ENSG00000171155.8	ENST00000304661.6:ENST00000371313.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.18642	4.3775200000000005	5.56862	0.00359152	4.90567e-6	0.0302391	1.526e-4
chr10	50306654	50306752	11486518	0	-	0.397959	(0.39,0.42]	chr10	876691	12	UTR3	UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	3.93679	4.377005	4.81722	3.23284e-6	1.74741e-9	1.18341e-4	1.71923e-7
chr1	65570637	65570719	253003	0	+	0.365854	(0.36,0.39]	chr1	28803	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	4.02042	4.376939999999999	4.73346	3.2963e-4	1.39717e-7	0.00504024	7.45332e-6
chr5	14652634	14652733	6462537	0	-	0.515152	(0.49,0.53]	chr5	502940	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	181	2	3.75812	4.3768899999999995	4.99566	6.60628e-8	1.17828e-11	3.91775e-6	2.21522e-9
chr4	90838902	90838969	5530268	0	-	0.447761	(0.42,0.455]	chr4	442609	1	EXON_PSEUDO	EXON_PSEUDO	TMSB4XP8	ENSG00000187653.11	ENST00000402089.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	72	2	2.8121	4.37681	5.94152	4.69141e-5	2.47621e-7	9.7437e-4	1.36676e-5
chr7	103098831	103098924	8440951	0	+	0.354839	(0.33,0.36]	chr7	644980	4	UTR3	UTR3:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000323716.8:ENST00000479145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.45014	4.3765	5.30286	8.23333e-5	1.23392e-5	0.00155613	3.58359e-4
chr11	61309877	61309960	12403990	0	-	0.506024	(0.49,0.53]	chr11	960199	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	107	2	3.93377	4.376035	4.8183	3.06483e-6	1.97443e-9	1.13887e-4	1.91611e-7
chr16	14664975	14665075	15560167	0	+	0.39	(0.36,0.39]	chr16	1231773	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000261658.7:ENST00000563313.5:ENST00000566710.1:ENST00000562545.5:ENST00000564078.1:ENST00000565478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.0322	4.37573	4.71926	0.00588589	5.29682e-4	0.0427941	0.006804
chr4	121831951	121832049	5626433	0	-	0.377551	(0.36,0.39]	chr4	448590	29	INTRON	INTRON	BBS7	ENSG00000138686.10	ENST00000264499.9:ENST00000506636.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.0322	4.37573	4.71926	0.00588589	5.29682e-4	0.0427941	0.006804
chr1	198706879	198706952	647973	0	+	0.369863	(0.36,0.39]	chr1	65098	3	CDS	CDS:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000367379.6:ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000367367.8:ENST00000529828.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	35	2	2.84089	4.37545	5.91001	0.0128123	4.5726e-7	0.0719798	2.05025e-5
chr11	68491269	68491369	11999805	0	+	0.39	(0.36,0.39]	chr11	923679	301	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.46497	4.3754100000000005	5.28585	0.00105709	2.81625e-5	0.0123035	6.42183e-4
chr20	49634231	49634330	18003167	0	-	0.494949	(0.49,0.53]	chr20	1525863	14	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	5	120	2	4.01788	4.375360000000001	4.73284	1.56805e-7	3.84711e-9	8.23767e-6	3.69112e-7
chr16	23572989	23573089	15594628	0	+	0.37	(0.36,0.39]	chr16	1236627	25	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.00115	4.37527	5.74939	0.0012486	1.44783e-6	0.0137762	5.46137e-5
chr9	14921806	14921906	10581563	0	-	0.46	(0.455,0.49]	chr9	800961	9	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	16	323	2	4.33952	4.37519	4.41086	6.28131e-12	3.94795e-12	1.2531e-9	7.65631e-10
chr3	10312578	10312654	4032411	0	-	0.565789	(0.53,0.59]	chr3	338599	1	CDS	CDS:EXON_MRNA	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000482647.5:ENST00000431352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	91	2	4.29638	4.37486	4.45334	3.13332e-6	2.26633e-7	1.15746e-4	1.12729e-5
chr22	39515668	39515767	18370748	0	+	0.40404	(0.39,0.42]	chr22	1563254	4	UTR3	UTR3:EXON_MRNA	MIEF1	ENSG00000100335.15	ENST00000402881.5:ENST00000325301.7:ENST00000433117.6:ENST00000404569.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.76141	4.37483	4.98825	2.14058e-4	1.62756e-4	0.00359478	0.00266622
chr9	70217383	70217478	10297064	0	+	0.442105	(0.42,0.455]	chr9	775395	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	MAMDC2:RPL24P8	ENSG00000165072.10:ENSG00000236801.1	ENST00000377182.5:ENST00000446071.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	81	2	3.19078	4.374745	5.55871	0.00310864	2.52732e-10	0.0274272	3.08557e-8
chr16	24215112	24215211	15599238	0	+	0.494949	(0.49,0.53]	chr16	1236920	4	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	9	200	2	4.25007	4.374675	4.49928	1.84669e-9	1.83467e-10	1.95105e-7	2.32504e-8
chr1	9556600	9556700	34237	0	+	0.44	(0.42,0.455]	chr1	3955	24	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	4.06324	4.374585	4.68593	1.14038e-6	4.87807e-7	4.91686e-5	2.16171e-5
chr5	69175466	69175537	6019348	0	+	0.408451	(0.39,0.42]	chr5	471247	2	CDS	CDS:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	3.85677	4.374475	4.89218	1.6518e-4	5.6465e-7	0.0029267300000000002	2.45601e-5
chr1	40753150	40753246	155391	0	+	0.364583	(0.36,0.39]	chr1	19483	1	CDS	CDS:EXON_MRNA:INTRON	NFYC	ENSG00000066136.20	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.7:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5:ENST00000440226.7:ENST00000525290.5:ENST00000416859.6:ENST00000530965.5:ENST00000308733.9:ENST00000414185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.16143	4.3744499999999995	4.58747	0.00486719	6.55819e-4	0.0366328	0.00860229
chr12	46204300	46204358	13313603	0	-	0.362069	(0.36,0.39]	chr12	1043504	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.16143	4.3744499999999995	4.58747	0.00486719	6.55819e-4	0.0366328	0.00860229
chr7	93215495	93215590	8927882	0	-	0.473684	(0.455,0.49]	chr7	681285	2	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.20348	4.37416	5.54484	3.27782e-4	4.89523e-6	0.0046686	1.67428e-4
chrX	66207264	66207334	18717701	0	+	0.5	(0.49,0.53]	chrX	1597028	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	164	2	2.11783	4.37413	6.63043	0.0142725	1e-12	0.0780078	2.25522e-10
chr5	14652039	14652138	6462531	0	-	0.50505	(0.49,0.53]	chr5	502940	2	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	137	2	3.41035	4.374115	5.33788	1.62733e-5	1.17034e-11	4.52905e-4	1.99273e-9
chr1	45690973	45691068	175228	0	+	0.452632	(0.42,0.455]	chr1	22787	1	UTR5	UTR5:EXON_MRNA:INTRON	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.19078	4.3739	5.55702	0.00310864	7.30994e-6	0.0274272	2.13219e-4
chr17	59773819	59773885	16296308	0	+	0.439394	(0.42,0.455]	chr17	1321825	2	CDS	CDS:EXON_MRNA:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000587945.1:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.19078	4.3739	5.55702	0.00310864	7.30994e-6	0.0274272	2.13219e-4
chr1	153662704	153662795	1298407	0	-	0.538462	(0.53,0.59]	chr1	130378	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	89	2	4.04129	4.37377	4.70625	1.5886e-6	5.10843e-7	5.89925e-5	2.51654e-5
chr15	28315895	28315977	14838074	0	+	0.548781	(0.53,0.59]	chr15	1164300	4	EXON_PSEUDO	EXON_PSEUDO	RPL41P2	ENSG00000256338.2	ENST00000544920.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	505	2	4.00602	4.37374	4.74146	5.22477e-10	1e-12	6.47664e-8	2.25522e-10
chr2	96717135	96717235	2791604	0	-	0.39	(0.36,0.39]	chr2	249111	36	INTRON	INTRON	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5:ENST00000480869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.32237	4.3736999999999995	4.42503	0.00273222	0.00133228	0.0237575	0.0144372
chr6	44406394	44406467	7162938	0	+	0.383562	(0.36,0.39]	chr6	553985	2	CDS	CDS:EXON_MRNA	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.32237	4.3736999999999995	4.42503	0.00273222	0.00133228	0.0237575	0.0144372
chr6	89329678	89329778	7836331	0	-	0.38	(0.36,0.39]	chr6	600222	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2J1	ENSG00000198833.7	ENST00000435041.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.32237	4.3736999999999995	4.42503	0.00273222	0.00133228	0.0237575	0.0144372
chr9	125172699	125172799	10856018	0	-	0.39	(0.36,0.39]	chr9	822362	3	INTRON	INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.32237	4.3736999999999995	4.42503	0.00273222	0.00133228	0.0237575	0.0144372
chr5	43232589	43232686	6560126	0	-	0.536082	(0.53,0.59]	chr5	508331	9	EXON_PSEUDO	EXON_PSEUDO	TUBAP14	ENSG00000247763.2	ENST00000501221.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	42	2	2.90978	4.373545	5.8373100000000004	0.00857883	2.06883e-6	0.0552386	7.35008e-5
chrX	49322056	49322144	18694499	0	+	0.568182	(0.53,0.59]	chrX	1594816	1	UTR5	UTR5:EXON_MRNA	GAGE12J	ENSG00000224659.2	ENST00000442437.2	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.68432	4.37322	6.06212	0.00118971	4.23179e-7	0.0128045	2.1371e-5
chr12	111470557	111470624	13540027	0	-	0.507463	(0.49,0.53]	chr12	1065273	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000550889.5:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	4.28332	4.373175	4.46303	0.00338762	2.57025e-6	0.0288632	8.8687100000000007e-05
chr1	151400763	151400845	471581	0	+	0.536585	(0.53,0.59]	chr1	48192	1	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	150	2	3.6883	4.3729	5.0575	5.36716e-8	3.24657e-8	3.28165e-6	2.34482e-6
chr1	173825229	173825329	549976	0	+	0.49	(0.455,0.49]	chr1	58406	1	CDS_START	CDS_START:CDS:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000648055.1:ENST00000650297.1:ENST00000648458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.10535	4.372565	4.63978	0.0064531	6.94032e-4	0.0450905	0.00876781
chr12	122143886	122143985	13123170	0	+	0.464646	(0.455,0.49]	chr12	1024850	22	UTR3	UTR3:EXON_MRNA	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000538698.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.10535	4.372565	4.63978	0.0064531	6.94032e-4	0.0450905	0.00876781
chr2	30640357	30640438	1709539	0	+	0.481481	(0.455,0.49]	chr2	167659	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LCLAT1	ENSG00000172954.14	ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.10535	4.372565	4.63978	0.0064531	6.94032e-4	0.0450905	0.00876781
chr2	240961487	240961585	3249121	0	-	0.489796	(0.455,0.49]	chr2	286756	17	INTRON	INTRON	UICLM	ENSG00000233392.5	ENST00000418218.5	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	4.10535	4.372565	4.63978	0.0064531	6.94032e-4	0.0450905	0.00876781
chr9	92222595	92222672	10736836	0	-	0.519481	(0.49,0.53]	chr9	812224	2	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.7546	4.37247	4.99034	2.09468e-4	1.6002e-4	0.00327655	0.00286408
chrX	47199546	47199614	18686742	0	+	0.529412	(0.49,0.53]	chrX	1593189	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000427561.5:ENST00000335972.11:ENST00000442035.5:ENST00000457753.5:ENST00000451702.2	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.7546	4.37247	4.99034	2.09468e-4	1.6002e-4	0.00327655	0.00286408
chr20	32849813	32849911	17755871	0	+	0.357143	(0.33,0.36]	chr20	1498956	12	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	4.04265	4.372455	4.70226	3.90477e-5	4.21411e-7	8.43777e-4	2.13696e-5
chr10	63357869	63357969	11533332	0	-	0.37	(0.36,0.39]	chr10	878586	888	INTRON	INTRON	JMJD1C	ENSG00000171988.19	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.4589	4.372375	5.28585	9.87237e-5	2.81625e-5	0.00194682	6.42183e-4
chr6	160068316	160068385	7528572	0	+	0.652174	(0.59,1]	chr6	574864	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	2.69477	4.37221	6.04965	0.020208	9.85057e-6	0.0978331	2.72926e-4
chr19	11111513	11111576	17230089	0	+	0.587302	(0.53,0.59]	chr19	1419580	1	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	92	2	4.37211	4.372195	4.37228	5.43864e-6	1.23454e-7	1.81467e-4	6.7072e-6
chr1	160092446	160092529	1327749	0	-	0.686747	(0.59,1]	chr1	135763	3	CDS	CDS:EXON_MRNA	IGSF8	ENSG00000162729.14	ENST00000368086.5:ENST00000314485.12:ENST00000614243.4	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.84557	4.37207	4.89857	0.0410704	0.00182139	0.163285	0.0176016
chr11	865693	865759	11759431	0	+	0.590909	(0.59,1]	chr11	898653	1	CDS	CDS:EXON_MRNA	TSPAN4	ENSG00000214063.11	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5:ENST00000464987.5:ENST00000346501.8:ENST00000532375.5:ENST00000409531.5:ENST00000527644.1:ENST00000468468.5:ENST00000529566.1:ENST00000494815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.84557	4.37207	4.89857	0.0410704	0.00182139	0.163285	0.0176016
chr12	120156911	120156992	13579315	0	-	0.641975	(0.59,1]	chr12	1068667	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000551920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	28	2	3.84557	4.37207	4.89857	0.0410704	0.00182139	0.163285	0.0176016
chr2	15218870	15218968	2526638	0	-	0.642857	(0.59,1]	chr2	227303	2	CDS	CDS:EXON_MRNA:INTRON	NBAS	ENSG00000151779.13	ENST00000417461.5:ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	28	2	3.84557	4.37207	4.89857	0.0410704	0.00182139	0.163285	0.0176016
chr22	41897106	41897161	18383851	0	+	0.672727	(0.59,1]	chr22	1565073	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1:ENST00000463741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	28	2	3.84557	4.37207	4.89857	0.0410704	0.00182139	0.163285	0.0176016
chrX	48905136	48905222	19063523	0	-	0.697674	(0.59,1]	chrX	1620558	3	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7:ENST00000446885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.84557	4.37207	4.89857	0.0410704	0.00182139	0.163285	0.0176016
chr9	137243631	137243707	10515411	0	+	0.460526	(0.455,0.49]	chr9	797251	2	UTR3	UTR3:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	3.17056	4.3718699999999995	5.57318	4.1243e-4	6.11867e-6	0.00604953	1.83393e-4
chr10	99420714	99420805	11657664	0	-	0.461538	(0.455,0.49]	chr10	888051	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000471741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr11	49433670	49433766	12391674	0	-	0.458333	(0.455,0.49]	chr11	957969	3	EXON_PSEUDO	EXON_PSEUDO	RP11-61N20.3	ENSG00000226268.3	ENST00000526165.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr15	77056159	77056255	15388240	0	-	0.458333	(0.455,0.49]	chr15	1216670	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TSPAN3	ENSG00000140391.15	ENST00000267970.9:ENST00000346495.6:ENST00000424443.7:ENST00000561277.5:ENST00000559494.1:ENST00000558745.5:ENST00000558394.5:ENST00000560514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr16	15037941	15038030	15863741	0	-	0.47191	(0.455,0.49]	chr16	1267507	2	UTR3	UTR3:EXON_MRNA	NTAN1	ENSG00000157045.9	ENST00000624579.3:ENST00000622833.4:ENST00000566542.5:ENST00000287706.8:ENST00000565187.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr17	40282362	40282461	16224368	0	+	0.464646	(0.455,0.49]	chr17	1312104	43	UTR3	UTR3:EXON_MRNA	WIPF2	ENSG00000171475.14	ENST00000323571.9	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr21	45515075	45515152	18279057	0	-	0.480519	(0.455,0.49]	chr21	1550592	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000468508.1:ENST00000311124.9:ENST00000460174.1:ENST00000650808.1:ENST00000380010.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr3	12618621	12618721	4041280	0	-	0.47	(0.455,0.49]	chr3	339265	1	CDS_START	CDS_START:CDS:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7:ENST00000423275.5:ENST00000416093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr8	94511529	94511629	9960215	0	-	0.47	(0.455,0.49]	chr8	751283	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr8	128041462	128041560	9615221	0	+	0.459184	(0.455,0.49]	chr8	728683	12	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr9	89709887	89709987	10350931	0	+	0.46	(0.455,0.49]	chr9	779162	75	INTRON	INTRON	UNQ6494	ENSG00000237372.4	ENST00000617436.1:ENST00000650746.1:ENST00000444374.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr9	113258693	113258777	10425101	0	+	0.464286	(0.455,0.49]	chr9	784733	1	CDS	CDS:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.20189	4.371815	4.54174	0.00397662	0.00130137	0.0322851	0.0136936
chr11	34451042	34451098	11906123	0	+	0.464286	(0.455,0.49]	chr11	909775	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	58	2	2.8427	4.371615	5.90053	1.88409e-4	4.02654e-7	0.00301567	2.05231e-5
chr14	23034747	23034781	14528852	0	-	0.676471	(0.59,1]	chr14	1138397	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PSMB5	ENSG00000100804.19	ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	28	2	3.87333	4.37155	4.86977	0.0348991	0.00246014	0.141505	0.0230058
chr17	42514307	42514383	16228748	0	+	0.565789	(0.53,0.59]	chr17	1312998	1	CDS	CDS:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	ATP6V0A1:MIR5010	ENSG00000033627.17:ENSG00000283929.1	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000582846.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	38	2	3.55001	4.371445	5.19288	6.11776e-4	9.22873e-5	0.00818575	0.0016906
chrX	152701583	152701677	18912172	0	+	0.56383	(0.53,0.59]	chrX	1610467	8	CDS	CDS:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.55001	4.371445	5.19288	6.11776e-4	9.22873e-5	0.00818575	0.0016906
chr3	113811666	113811763	3676141	0	+	0.42268	(0.42,0.455]	chr3	314510	24	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.8096	4.37139	5.93318	0.00253237	5.79703e-7	0.0233955	2.50873e-5
chr7	135951516	135951573	9085798	0	-	0.421053	(0.42,0.455]	chr7	693659	1	CDS	CDS:EXON_MRNA:INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.2972	4.370805000000001	5.44441	1.93851e-4	8.23077e-6	0.00307904	2.56136e-4
chr7	65970281	65970366	8834471	0	-	0.552941	(0.53,0.59]	chr7	674579	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.21941	4.370545	5.52168	0.00266171	1.48967e-5	0.0240332	3.81697e-4
chr12	56597252	56597349	13351654	0	-	0.391753	(0.39,0.42]	chr12	1051592	18	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	4.08157	4.370405	4.65924	1.0443e-6	7.62728e-9	4.57959e-5	6.15692e-7
chr15	90271354	90271437	15098968	0	+	0.566265	(0.53,0.59]	chr15	1187929	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-697E2.6:NGRN:RP11-697E2.12	ENSG00000261147.1:ENSG00000182768.9:ENSG00000275674.1	ENST00000561573.1:ENST00000331497.3:ENST00000379095.5:ENST00000622269.1:ENST00000411845.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.30195	4.37029	4.43863	0.00421989	0.00254763	0.0328662	0.0233955
chr2	47904516	47904592	2634991	0	-	0.539474	(0.53,0.59]	chr2	237145	4	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.30195	4.37029	4.43863	0.00421989	0.00254763	0.0328662	0.0233955
chr20	1164317	1164396	17645626	0	+	0.56962	(0.53,0.59]	chr20	1491529	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000479715.5:ENST00000246015.8:ENST00000335877.11:ENST00000484891.1:ENST00000435720.5:ENST00000381898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.30195	4.37029	4.43863	0.00421989	0.00254763	0.0328662	0.0233955
chr20	44500395	44500434	17981998	0	-	0.538462	(0.53,0.59]	chr20	1523366	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.30195	4.37029	4.43863	0.00421989	0.00254763	0.0328662	0.0233955
chr9	136418554	136418613	10512264	0	+	0.542373	(0.53,0.59]	chr9	796206	1	CDS	CDS:EXON_MRNA	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.30195	4.37029	4.43863	0.00421989	0.00254763	0.0328662	0.0233955
chr1	12111897	12111955	46544	0	+	0.568965	(0.53,0.59]	chr1	6024	1	CDS	CDS:UTR3:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.30776	4.3702749999999995	4.43279	0.00407289	0.0026472	0.0324137	0.0231864
chr15	74897630	74897730	15029965	0	+	0.54	(0.53,0.59]	chr15	1181554	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MPI	ENSG00000178802.18	ENST00000566377.5:ENST00000352410.9:ENST00000323744.10:ENST00000535694.5:ENST00000563786.5:ENST00000562800.5:ENST00000567177.1:ENST00000566556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.30776	4.3702749999999995	4.43279	0.00407289	0.0026472	0.0324137	0.0231864
chr19	16234790	16234879	17248329	0	+	0.550562	(0.53,0.59]	chr19	1423193	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	AP1M1	ENSG00000072958.9	ENST00000590756.5:ENST00000291439.8:ENST00000444449.6:ENST00000586543.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.30776	4.3702749999999995	4.43279	0.00407289	0.0026472	0.0324137	0.0231864
chr2	218346411	218346506	2389012	0	+	0.547368	(0.53,0.59]	chr2	214513	16	UTR3	UTR3:EXON_MRNA	PNKD	ENSG00000127838.14	ENST00000273077.9:ENST00000258362.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.30776	4.3702749999999995	4.43279	0.00407289	0.0026472	0.0324137	0.0231864
chr6	43640185	43640267	7159479	0	+	0.573171	(0.53,0.59]	chr6	553385	3	CDS	CDS:EXON_MRNA	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.30776	4.3702749999999995	4.43279	0.00407289	0.0026472	0.0324137	0.0231864
chr7	117190833	117190884	8480627	0	+	0.588235	(0.53,0.59]	chr7	647702	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000489293.5:ENST00000485394.6:ENST00000465641.5:ENST00000543837.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.30776	4.3702749999999995	4.43279	0.00407289	0.0026472	0.0324137	0.0231864
chr22	36517300	36517361	18499662	0	-	0.508197	(0.49,0.53]	chr22	1578429	1	CDS	CDS:UTR3:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	3.68499	4.370045	5.0551	2.9991e-4	2.55273e-8	0.00472028	1.73844e-6
chr17	15230916	15231016	16454718	0	-	0.57	(0.53,0.59]	chr17	1343070	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PMP22	ENSG00000109099.16	ENST00000674673.1:ENST00000312280.9:ENST00000494511.7:ENST00000580584.3:ENST00000612492.5:ENST00000395938.7:ENST00000675854.1:ENST00000643451.2:ENST00000675819.1:ENST00000676329.1:ENST00000675551.1:ENST00000676002.1:ENST00000676221.1:ENST00000675950.1:ENST00000675808.1:ENST00000674871.1:ENST00000674651.1:ENST00000644020.1:ENST00000676161.1:ENST00000674707.1:ENST00000646419.2:ENST00000395936.7:ENST00000674947.1:ENST00000675197.1:ENST00000675350.1:ENST00000674868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.47419	4.36955	5.26491	8.75273e-4	6.31437e-5	0.0106963	0.00124286
chr7	44468140	44468222	8260281	0	+	0.487805	(0.455,0.49]	chr7	629216	4	EXON_PSEUDO	EXON_PSEUDO	RPL32P18	ENSG00000146677.7	ENST00000487895.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	224	2	3.88129	4.3693	4.85731	1.77438e-8	1e-12	1.38487e-6	2.25522e-10
chr17	7577568	7577637	16105678	0	+	0.492754	(0.49,0.53]	chr17	1296966	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000581544.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000578324.5:ENST00000583389.5:ENST00000578569.1:ENST00000583217.1:ENST00000581841.1:ENST00000582050.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	5	122	2	4.25837	4.369205	4.48004	2.60666e-7	2.22291e-9	1.26854e-5	2.28625e-7
chr17	28558475	28558532	16485746	0	-	0.578947	(0.53,0.59]	chr17	1347697	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000484580.6:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.5393	4.369065	5.19883	6.46017e-4	8.7034e-5	0.00799743	0.00177086
chr2	219217669	219217738	3191248	0	-	0.521739	(0.49,0.53]	chr2	280841	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	4.17834	4.368815	4.55929	0.00116196	1.74561e-5	0.0130851	4.38078e-4
chr19	44990394	44990489	17350306	0	+	0.589474	(0.53,0.59]	chr19	1439383	1	CDS	CDS:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000588274.1:ENST00000589347.1:ENST00000586975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.20874	4.3682	5.52766	0.00278422	1.38993e-5	0.0241009	3.94563e-4
chr1	186390780	186390851	612044	0	+	0.366197	(0.36,0.39]	chr1	63379	2	CDS	CDS:EXON_MRNA	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.80225	4.36803	4.93381	1.90009e-4	1.85308e-4	0.00322093	0.00302753
chr8	47774323	47774374	9815466	0	-	0.568627	(0.53,0.59]	chr8	742455	2	CDS	CDS:UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.61294	4.3679749999999995	5.12301	0.0310038	1.2852e-4	0.130016	0.00241206
chr1	12192430	12192524	47147	0	+	0.56383	(0.53,0.59]	chr1	6102	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1:ENST00000489921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.61856	4.367815	5.11707	0.0303021	1.35965e-4	0.129773	0.00231202
chr14	94062489	94062589	14775262	0	-	0.57	(0.53,0.59]	chr14	1157303	1	CDS_START	CDS_START:CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.61856	4.367815	5.11707	0.0303021	1.35965e-4	0.129773	0.00231202
chr15	74632611	74632711	15375026	0	-	0.55	(0.53,0.59]	chr15	1215289	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.61856	4.367815	5.11707	0.0303021	1.35965e-4	0.129773	0.00231202
chr5	15451718	15451811	5885479	0	+	0.55914	(0.53,0.59]	chr5	462707	12	EXON_PSEUDO	EXON_PSEUDO:INTRON	CTD-2313D3.2:CTD-2313D3.1	ENSG00000286377.1:ENSG00000248699.1	ENST00000671652.1:ENST00000502306.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	24	2	3.61856	4.367815	5.11707	0.0303021	1.35965e-4	0.129773	0.00231202
chr6	32162950	32163041	7118529	0	+	0.56044	(0.53,0.59]	chr6	546945	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.61856	4.367815	5.11707	0.0303021	1.35965e-4	0.129773	0.00231202
chr8	43122489	43122585	9308498	0	+	0.572917	(0.53,0.59]	chr8	712878	5	CDS	CDS:UTR3:EXON_MRNA	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.61856	4.367815	5.11707	0.0303021	1.35965e-4	0.129773	0.00231202
chr12	69593509	69593561	12943489	0	+	0.384615	(0.36,0.39]	chr12	1008992	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1:ENST00000553169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	4.08535	4.367725	4.6501	1.13346e-6	5.80078e-7	4.90979e-5	2.50873e-5
chr3	139378040	139378114	4479685	0	-	0.418919	(0.39,0.42]	chr3	372272	1	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	3.35466	4.36749	5.38032	1.40185e-4	9.82886e-6	0.00236775	2.98194e-4
chr5	95753142	95753239	6108070	0	+	0.360825	(0.36,0.39]	chr5	478223	4	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.53094	4.367125	5.20331	0.0305588	2.53222e-5	0.130016	6.51851e-4
chr1	45693203	45693289	175251	0	+	0.406977	(0.39,0.42]	chr1	22794	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	103	2	4.15174	4.36643	4.58112	4.62816e-8	1.32807e-8	2.87822e-6	1.08317e-6
chr5	96803402	96803486	6721394	0	-	0.452381	(0.42,0.455]	chr5	517485	1	CDS	CDS:UTR5:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5:ENST00000508227.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.7523	4.36601	5.97972	0.0153283	4.13864e-7	0.0828908	1.88179e-5
chr1	21873374	21873424	891191	0	-	0.68	(0.59,1]	chr1	92496	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000427897.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr1	23795773	23795860	897427	0	-	0.666667	(0.59,1]	chr1	93199	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALE	ENSG00000117308.15	ENST00000481736.5:ENST00000617979.5:ENST00000374497.7:ENST00000456977.5:ENST00000459934.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr1	150559760	150559832	468525	0	+	0.638889	(0.59,1]	chr1	47502	1	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr11	47354950	47355042	12386020	0	-	0.717391	(0.59,1]	chr11	956787	2	UTR3	UTR3:EXON_MRNA	SPI1	ENSG00000066336.12	ENST00000378538.8:ENST00000227163.8	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr14	81476971	81477071	14732730	0	-	0.67	(0.59,1]	chr14	1154140	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr16	2168098	2168198	15491149	0	+	0.67	(0.59,1]	chr16	1226966	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr17	44014356	44014400	16555947	0	-	0.659091	(0.59,1]	chr17	1358826	1	CDS	CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8:ENST00000587529.1:ENST00000585950.5:ENST00000592127.5:ENST00000590905.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr17	49711161	49711254	16583011	0	-	0.655914	(0.59,1]	chr17	1362589	10	UTR3	UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr19	10333288	10333347	17459474	0	-	0.644068	(0.59,1]	chr19	1460772	1	CDS	CDS:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr19	44992715	44992797	17350335	0	+	0.731707	(0.59,1]	chr19	1439402	3	CDS	CDS:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000586915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr22	42066709	42066804	18520779	0	-	0.673684	(0.59,1]	chr22	1581521	1	CDS	CDS:EXON_MRNA	NAGA	ENSG00000198951.12	ENST00000396398.8:ENST00000403363.5:ENST00000402937.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr3	49532235	49532331	3460750	0	+	0.625	(0.59,1]	chr3	302127	16	CDS	CDS:EXON_MRNA	DAG1	ENSG00000173402.12	ENST00000515359.6:ENST00000538711.5:ENST00000539901.5:ENST00000541308.5:ENST00000545947.5:ENST00000308775.7:ENST00000673708.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr9	132989060	132989129	10502706	0	+	0.666667	(0.59,1]	chr9	794039	1	CDS	CDS:EXON_MRNA:INTRON	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5:ENST00000636263.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chrX	48791269	48791329	18692990	0	+	0.666667	(0.59,1]	chrX	1594393	2	CDS	CDS:EXON_MRNA:INTRON	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.98751	4.365645	4.74378	0.0301044	0.00312942	0.129773	0.0264364
chr22	41813354	41813445	18383000	0	+	0.604396	(0.59,1]	chr22	1564965	2	CDS	CDS:EXON_MRNA:INTRON	CCDC134	ENSG00000100147.14	ENST00000255784.6:ENST00000402061.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.28861	4.365485	5.44236	0.0028753	2.02004e-4	0.0256141	0.00317801
chr19	48330300	48330370	17365262	0	+	0.614286	(0.59,1]	chr19	1441708	1	CDS	CDS:UTR3:EXON_MRNA	EMP3	ENSG00000142227.11	ENST00000596315.5:ENST00000594198.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1:ENST00000597057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	451	2	4.04677	4.365460000000001	4.68415	5.68432e-8	6.90006e-10	3.43245e-6	8.2545e-8
chr12	6870264	6870283	12714952	0	+	0.631579	(0.59,1]	chr12	987155	1	CDS	CDS:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000488464.6:ENST00000535434.5:ENST00000474253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	27	2	4.01545	4.3652750000000005	4.7151	0.0251889	0.00412279	0.114168	0.0325842
chr17	17281186	17281273	16464541	0	-	0.747126	(0.59,1]	chr17	1344545	1	UTR5	UTR5:EXON_MRNA	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000578317.5:ENST00000417352.5:ENST00000584216.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	27	2	4.01545	4.3652750000000005	4.7151	0.0251889	0.00412279	0.114168	0.0325842
chr7	140702865	140702959	8569926	0	+	0.595745	(0.59,1]	chr7	654008	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000465506.5:ENST00000247866.9:ENST00000464564.6:ENST00000476181.5:ENST00000464566.5:ENST00000460088.5:ENST00000472695.5:ENST00000476470.5:ENST00000471136.5:ENST00000475276.1:ENST00000479181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	4.01545	4.3652750000000005	4.7151	0.0251889	0.00412279	0.114168	0.0325842
chr5	53884232	53884329	6575896	0	-	0.329897	(0.29,0.33]	chr5	509078	4	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.64709	4.365195	5.0833	3.76873e-4	4.57622e-5	0.00523508	0.00105479
chr15	68188426	68188524	14995004	0	+	0.397959	(0.39,0.42]	chr15	1178737	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	92	2	3.68984	4.36518	5.04052	4.15802e-7	1.96369e-8	1.88962e-5	1.51544e-6
chr11	123058709	123058809	12636971	0	-	0.46	(0.455,0.49]	chr11	980705	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000524552.5:ENST00000526686.1:ENST00000533238.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	296	2	4.32306	4.365155	4.40725	3.08241e-11	2.80465e-12	4.75419e-9	6.1086e-10
chr1	11988026	11988126	45598	0	+	0.36	(0.33,0.36]	chr1	5829	2	SS3_PROX	SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.20756	4.36511	4.52266	0.00386591	8.34989e-4	0.0310764	0.0102956
chr15	67077187	67077287	14986562	0	+	0.36	(0.33,0.36]	chr15	1178109	89	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.20756	4.36511	4.52266	0.00386591	8.34989e-4	0.0310764	0.0102956
chr13	96884831	96884930	14116338	0	-	0.464646	(0.455,0.49]	chr13	1104926	11	EXON_PSEUDO	EXON_PSEUDO	HSP90AB6P	ENSG00000235137.2	ENST00000426420.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	43	2	2.92901	4.36451	5.80001	0.00141135	1.35407e-6	0.0151901	5.16241e-5
chr8	63209805	63209904	9370711	0	+	0.40404	(0.39,0.42]	chr8	715902	2	UTR3	UTR3:EXON_MRNA	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.98448	4.364435	5.74439	2.45186e-4	7.99187e-7	0.00370692	3.66071e-5
chr1	198297183	198297240	647019	0	+	0.403509	(0.39,0.42]	chr1	65035	2	CDS	CDS:EXON_MRNA	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5:ENST00000493790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.93996	4.36437	4.78878	0.00841622	4.27222e-4	0.054565	0.00577513
chr10	70426028	70426128	11100491	0	+	0.42	(0.39,0.42]	chr10	844350	44	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.93996	4.36437	4.78878	0.00841622	4.27222e-4	0.054565	0.00577513
chr4	13337450	13337537	4721282	0	+	0.390805	(0.39,0.42]	chr4	391941	1	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	19	2	3.93996	4.36437	4.78878	0.00841622	4.27222e-4	0.054565	0.00577513
chr1	45013908	45013989	174339	0	+	0.567901	(0.53,0.59]	chr1	22548	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5:ENST00000490385.5:ENST00000460906.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000496439.1:ENST00000652514.1:ENST00000473012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	68	2	4.27526	4.3643	4.45334	1.03921e-5	3.13332e-6	2.85526e-4	1.15746e-4
chr22	17729194	17729292	18291168	0	+	0.377551	(0.36,0.39]	chr22	1552152	18	UTR3	UTR3:EXON_MRNA	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000317582.10:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.69835	4.364275	5.0302	3.2708e-4	1.15931e-4	0.00502339	0.00204552
chr17	7579981	7580068	16105711	0	+	0.574713	(0.53,0.59]	chr17	1296984	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	71	2	3.93648	4.36404	4.7916	8.06385e-5	2.73039e-7	0.00167444	1.31828e-5
chr14	23131460	23131557	14529565	0	-	0.618557	(0.59,1]	chr14	1138662	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4:ENST00000528806.5:ENST00000528186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	3.3659	4.363965	5.36203	3.74697e-4	2.1483e-4	0.00560631	0.00332687
chr12	123756900	123756986	13128613	0	+	0.488372	(0.455,0.49]	chr12	1026160	2	CDS	CDS:UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000534943.5:ENST00000544833.1:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	4.21963	4.36384	4.50805	0.00122223	3.43063e-7	0.0135383	1.6072e-5
chrM	770	868	19377146	0	+	0.428571	(0.42,0.455]	chrM	1649798	3	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	788	14576	2	4.19476	4.363485	4.53221	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	161960229	161960328	503832	0	+	0.363636	(0.36,0.39]	chr1	54599	17	UTR3	UTR3:EXON_MRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000367942.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.2928	4.363475	5.43415	2.65442e-4	1.15393e-5	0.004287	3.09736e-4
chr1	224371352	224371423	728744	0	+	0.394366	(0.39,0.42]	chr1	73639	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	4.08702	4.362925	4.63883	5.68159e-4	3.01232e-5	0.0077844	6.78876e-4
chr16	70569042	70569141	15730146	0	+	0.545455	(0.53,0.59]	chr16	1253012	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.515	4.362495	6.20999	0.0292633	1.51461e-7	0.129773	8.00634e-6
chr20	3934993	3935073	17883276	0	-	0.5125	(0.49,0.53]	chr20	1513725	1	CDS	CDS:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.33099	4.362489999999999	5.39399	1.59567e-4	1.71804e-5	0.00263091	4.72485e-4
chr15	100941320	100941420	15150232	0	+	0.49	(0.455,0.49]	chr15	1191315	162	INTRON	INTRON	LRRK1	ENSG00000154237.13	ENST00000527698.1:ENST00000532029.6:ENST00000388948.8:ENST00000525284.5:ENST00000531270.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.47671	4.361975	5.24724	0.0368644	3.09759e-5	0.145024	7.62166e-4
chr19	6692024	6692124	17443550	0	-	0.49	(0.455,0.49]	chr19	1457269	9	INTRON	INTRON	C3	ENSG00000125730.17	ENST00000245907.11:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.47671	4.361975	5.24724	0.0368644	3.09759e-5	0.145024	7.62166e-4
chr12	53459271	53459337	12886521	0	+	0.575758	(0.53,0.59]	chr12	1002421	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000548190.1:ENST00000550585.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	11	188	2	3.2802	4.3614999999999995	5.4428	1.49207e-7	1.17076e-9	7.92926e-6	1.307e-7
chr12	21635341	21635430	13236601	0	-	0.359551	(0.33,0.36]	chr12	1037941	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000648372.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	4.1284	4.361485	4.59457	0.00407303	8.56859e-7	0.0324137	3.50542e-5
chr19	48326844	48326922	17365220	0	+	0.487179	(0.455,0.49]	chr19	1441687	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	169	2	4.32574	4.36137	4.397	1.0517e-9	6.48592e-10	1.19516e-7	7.11131e-8
chr5	179708358	179708380	6414236	0	+	0.454545	(0.42,0.455]	chr5	499156	1	CDS	CDS:UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.57051	4.36135	6.15219	0.0265466	1.13536e-7	0.120071	6.23788e-6
chr18	35990703	35990801	17077738	0	-	0.397959	(0.39,0.42]	chr18	1403036	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000587563.5:ENST00000585879.1:ENST00000399022.9:ENST00000590898.5:ENST00000357384.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.19588	4.36107	5.52626	0.00321212	7.67816e-6	0.0280721	2.20857e-4
chr3	172796493	172796558	4585333	0	-	0.492308	(0.49,0.53]	chr3	379366	2	EXON_SMALL	EXON_SMALL	RNU4-4P	ENSG00000201458.1	ENST00000364588.1	snRNA	snRNA	snRNA	snRNA	5	119	2	4.18361	4.36107	4.53853	3.77422e-8	2.25359e-8	2.4281e-6	1.69626e-6
chr12	56144583	56144674	12898443	0	+	0.395604	(0.39,0.42]	chr12	1004319	9	UTR3	UTR3:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.82973	4.360955	4.89218	1.6518e-4	1.3728e-4	0.0029267300000000002	0.00232973
chr6	90513767	90513864	7843483	0	-	0.402062	(0.39,0.42]	chr6	600991	3	UTR3	UTR3:EXON_MRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.82973	4.360955	4.89218	1.6518e-4	1.3728e-4	0.0029267300000000002	0.00232973
chr17	59674700	59674771	16295381	0	+	0.380282	(0.36,0.39]	chr17	1321697	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.99	4.36073	4.73146	6.1616e-5	3.06966e-7	0.00133408	1.45846e-5
chr19	50725218	50725300	17376987	0	+	0.670732	(0.59,1]	chr19	1444805	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLEC11A	ENSG00000105472.13	ENST00000250340.9:ENST00000617718.4:ENST00000599973.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	4.00624	4.36067	4.7151	0.00412279	1.12192e-4	0.0325842	0.00199438
chr2	74464617	74464717	2742921	0	-	0.67	(0.59,1]	chr2	244428	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1:ENST00000414701.1:ENST00000486036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	4.00624	4.36067	4.7151	0.00412279	1.12192e-4	0.0325842	0.00199438
chr6	28158965	28159064	7105841	0	+	0.383838	(0.36,0.39]	chr6	543601	51	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	4.08535	4.360305	4.63526	1.13346e-6	8.80618e-9	4.90979e-5	6.95252e-7
chr7	100095773	100095807	8949650	0	-	0.617647	(0.59,1]	chr7	683523	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.30708	4.360165	5.41325	0.00252451	3.01546e-4	0.0226777	0.00472028
chr6	32180067	32180126	7118661	0	+	0.559322	(0.53,0.59]	chr6	547009	2	CDS	CDS:EXON_MRNA:PRIMIRNA	RNF5:MIR6833	ENSG00000204308.8:ENSG00000277264.1	ENST00000375094.4:ENST00000620680.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	74	2	2.65777	4.359945	6.06212	2.52562e-4	4.23179e-7	0.00380854	2.1371e-5
chr1	219980162	219980240	1510783	0	-	0.397436	(0.39,0.42]	chr1	150986	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.32811	4.3598550000000005	5.3916	0.00182819	1.09038e-9	0.0183913	1.1305e-7
chr22	40972579	40972670	18378055	0	+	0.351648	(0.33,0.36]	chr22	1564053	2	UTR3	UTR3:EXON_MRNA	RBX1	ENSG00000100387.9	ENST00000216225.9:ENST00000467617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	2.57153	4.35965	6.14777	0.00330025	5.68759e-8	0.028478	3.43245e-6
chr3	5179363	5179460	3278252	0	+	0.43299	(0.42,0.455]	chr3	288772	7	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	3.16223	4.359624999999999	5.55702	4.45084e-4	7.30994e-6	0.00633715	2.13219e-4
chr12	63823105	63823204	12916677	0	+	0.474747	(0.455,0.49]	chr12	1006815	12	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	104	2	3.76882	4.3595749999999995	4.95033	1.00626e-5	5.08722e-10	3.03291e-4	5.76059e-8
chr11	1996003	1996095	12230708	0	-	0.619565	(0.59,1]	chr11	944462	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H19	ENSG00000130600.19	ENST00000414790.6:ENST00000412788.5:ENST00000439725.5:ENST00000411861.5:ENST00000417089.6:ENST00000431095.7:ENST00000442037.5:ENST00000428066.6:ENST00000436715.5:ENST00000447298.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	26	2	4.34487	4.35905	4.37323	0.0123678	0.00990413	0.0705839	0.061536
chr19	2038027	2038126	17421449	0	-	0.676768	(0.59,1]	chr19	1453118	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.77109	4.35902	5.94695	0.00331425	1.71208e-5	0.0285314	4.31898e-4
chr19	38730118	38730216	17323771	0	+	0.173469	[0,0.29]	chr19	1434386	2	UTR3	UTR3:EXON_MRNA	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000589528.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.95883	4.35902	4.75921	2.77035e-4	6.6966e-5	0.00444204	0.00130441
chr1	55052344	55052411	203726	0	+	0.641791	(0.59,1]	chr1	26136	2	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	108	2	4.31663	4.35888	4.40113	2.15624e-5	1.5917e-5	5.14797e-4	4.44589e-4
chr1	153960295	153960393	1300329	0	-	0.612245	(0.59,1]	chr1	130745	2	CDS	CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1:ENST00000413622.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	108	2	4.31663	4.35888	4.40113	2.15624e-5	1.5917e-5	5.14797e-4	4.44589e-4
chr16	70570077	70570149	15730159	0	+	0.5	(0.49,0.53]	chr16	1253019	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.8233	4.358675	4.89405	2.57983e-4	1.44192e-4	0.00419998	0.00242438
chr18	46087416	46087492	17103832	0	-	0.565789	(0.53,0.59]	chr18	1404362	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5:ENST00000589252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	3.97791	4.358465	4.73902	2.51849e-6	3.99607e-7	8.73415e-5	2.04183e-5
chrX	49342303	49342387	18694670	0	+	0.511905	(0.49,0.53]	chrX	1594873	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE2E	ENSG00000275113.1	ENST00000621907.1	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	4.25837	4.3583549999999995	4.45834	2.60666e-7	4.55418e-8	1.26854e-5	3.14461e-6
chr17	64002846	64002925	16636178	0	-	0.556962	(0.53,0.59]	chr17	1368036	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.15805	4.358325000000001	4.5586	0.00680952	0.00161229	0.0468196	0.0169168
chr18	49292301	49292401	17117752	0	-	0.56	(0.53,0.59]	chr18	1405426	53	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.15805	4.358325000000001	4.5586	0.00680952	0.00161229	0.0468196	0.0169168
chr2	128010268	128010330	2870258	0	-	0.532258	(0.53,0.59]	chr2	256648	1	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.15805	4.358325000000001	4.5586	0.00680952	0.00161229	0.0468196	0.0169168
chr5	150692960	150693026	6914611	0	-	0.545455	(0.53,0.59]	chr5	529228	2	CDS	CDS:EXON_MRNA	RBM22	ENSG00000086589.12	ENST00000199814.9:ENST00000520132.1:ENST00000447771.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.15805	4.358325000000001	4.5586	0.00680952	0.00161229	0.0468196	0.0169168
chr1	20652478	20652528	882243	0	-	0.62	(0.59,1]	chr1	91112	1	CDS	CDS:EXON_MRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7	protein_coding	protein_coding	protein_coding	protein_coding	3	145	2	4.24235	4.35832	4.47429	1.05499e-5	1.34419e-6	3.15564e-4	5.14157e-5
chr1	40374120	40374220	153541	0	+	0.54	(0.53,0.59]	chr1	19212	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr1	226064451	226064479	738344	0	+	0.5	(0.49,0.53]	chr1	74463	1	CDS	CDS:EXON_MRNA:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	4.01171	4.358285	4.70486	4.88513e-5	3.98937e-7	0.00100497	2.04083e-5
chr11	68896555	68896655	12433587	0	-	0.54	(0.53,0.59]	chr11	966401	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	MRPL21	ENSG00000197345.13	ENST00000450904.6:ENST00000362034.7:ENST00000565125.5:ENST00000541279.1:ENST00000567045.5:ENST00000544567.5:ENST00000541265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr17	30249016	30249116	16495763	0	-	0.56	(0.53,0.59]	chr17	1349315	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578795.1:ENST00000578090.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr17	74440533	74440627	16350210	0	+	0.56383	(0.53,0.59]	chr17	1326483	8	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	GPRC5C	ENSG00000170412.18	ENST00000342648.9:ENST00000481232.2:ENST00000652232.1:ENST00000392627.7:ENST00000392628.7:ENST00000652294.1:ENST00000392629.3:ENST00000581590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr18	23536808	23536876	17037312	0	-	0.573529	(0.53,0.59]	chr18	1400544	3	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000591955.1:ENST00000591075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr19	6532092	6532188	17213496	0	+	0.572917	(0.53,0.59]	chr19	1415913	4	INTRON	INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr5	5464227	5464327	5859076	0	+	0.54	(0.53,0.59]	chr5	460844	39	CDS	CDS:EXON_MRNA	ICE1	ENSG00000164151.12	ENST00000296564.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr6	143060925	143061025	7444888	0	+	0.55	(0.53,0.59]	chr6	569841	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000367596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr7	44404439	44404511	8798899	0	-	0.541667	(0.53,0.59]	chr7	671115	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000493613.5:ENST00000472246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr8	28837636	28837729	9776551	0	-	0.580645	(0.53,0.59]	chr8	739128	1	CDS	CDS:UTR3:EXON_MRNA	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000524081.5:ENST00000520437.1:ENST00000520184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr9	134340033	134340133	10505693	0	+	0.59	(0.53,0.59]	chr9	794894	130	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chrX	39787313	39787405	19044751	0	-	0.576087	(0.53,0.59]	chrX	1618678	3	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chrX	133762795	133762893	18862846	0	+	0.530612	(0.53,0.59]	chrX	1607274	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP63	ENSG00000233260.1	ENST00000412013.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	4.16383	4.358285	4.55274	0.00659193	0.00167999	0.0454205	0.0164993
chr12	54234968	54235068	13342876	0	-	0.29	[0,0.29]	chr12	1049602	36	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	3.14656	4.358045000000001	5.56953	2.61296e-5	3.09235e-6	6.71231e-4	1.03588e-4
chr10	119035840	119035939	11717186	0	-	0.353535	(0.33,0.36]	chr10	893755	23	UTR3	UTR3:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.97606	4.35778	5.7395	0.00871774	1.26833e-6	0.0558165	4.89488e-5
chrX	23671587	23671646	18615917	0	+	0.355932	(0.33,0.36]	chrX	1589661	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000495599.1:ENST00000379331.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.97606	4.35778	5.7395	0.00871774	1.26833e-6	0.0558165	4.89488e-5
chrX	155277702	155277802	19283291	0	-	0.29	[0,0.29]	chrX	1639082	16	UTR3	UTR3:EXON_MRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.94136	4.35773	4.7741	7.11071e-6	1.99118e-7	2.28404e-4	1.01119e-5
chr6	41789530	41789617	7150333	0	+	0.425287	(0.42,0.455]	chr6	551654	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	4.16236	4.35762	4.55288	1.83138e-5	2.12083e-8	4.99708e-4	1.48013e-6
chr1	29117502	29117600	121624	0	+	0.469388	(0.455,0.49]	chr1	14751	8	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	142	2	3.85088	4.357555	4.86423	5.77607e-7	5.07008e-11	2.77476e-5	7.44435e-9
chr1	155256372	155256419	1307280	0	-	0.574468	(0.53,0.59]	chr1	132094	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.65894	4.357515	6.05609	0.0193255	4.62627e-7	0.0943643	2.06661e-5
chr14	74486328	74486382	14705349	0	-	0.537037	(0.53,0.59]	chr14	1151751	1	CDS	CDS:EXON_MRNA	NPC2	ENSG00000119655.11	ENST00000434013.6:ENST00000541064.5:ENST00000555619.6:ENST00000238633.6:ENST00000554482.1:ENST00000553490.5:ENST00000556009.5:ENST00000557510.5:ENST00000555592.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.65894	4.357515	6.05609	0.0193255	4.62627e-7	0.0943643	2.06661e-5
chr1	156014960	156015014	1313122	0	-	0.555556	(0.53,0.59]	chr1	133092	1	CDS	CDS:EXON_MRNA:INTRON	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5:ENST00000368311.5:ENST00000472898.5:ENST00000466905.4:ENST00000474377.5:ENST00000531917.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	4.053	4.3574649999999995	4.66193	1.44202e-6	7.20737e-7	5.98092e-5	3.019e-5
chr5	28960472	28960572	5915436	0	+	0.3	(0.29,0.33]	chr5	463658	333	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	4.0747	4.35722	4.63974	0.00577533	4.81181e-4	0.0417823	0.00677016
chr6	5642114	5642214	7026418	0	+	0.32	(0.29,0.33]	chr6	538544	284	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.0747	4.35722	4.63974	0.00577533	4.81181e-4	0.0417823	0.00677016
chr5	140567028	140567117	6255375	0	+	0.516854	(0.49,0.53]	chr5	487692	4	UTR3	UTR3:UTR5:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000623481.3:ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.16986	4.35688	5.5439	3.95698e-4	8.44877e-6	0.00587341	2.39255e-4
chr2	30568117	30568176	1708814	0	+	0.372881	(0.36,0.39]	chr2	167647	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.98025	4.3568549999999995	4.73346	0.00881716	3.2963e-4	0.0562439	0.00504024
chr14	52640210	52640309	14630032	0	-	0.434343	(0.42,0.455]	chr14	1145962	4	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.03383	4.35682	4.67981	5.38444e-4	4.24324e-5	0.00744072	8.98949e-4
chr10	95268777	95268862	11630089	0	-	0.482353	(0.455,0.49]	chr10	885746	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5:ENST00000493949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.65079	4.3568050000000005	5.06282	3.61776e-4	1.16789e-4	0.00544764	0.0020505
chr12	34026147	34026243	12822288	0	+	0.333333	(0.33,0.36]	chr12	995601	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000541178.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.83586	4.356755	4.87765	2.2423e-4	1.7178e-4	0.00344776	0.00302124
chr19	14752431	14752526	17482383	0	-	0.589474	(0.53,0.59]	chr19	1464790	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.3733	4.35639	5.33948	0.0529193	4.08763e-5	0.18423900000000001	9.64741e-4
chr17	42404872	42404958	16548234	0	-	0.627907	(0.59,1]	chr17	1357381	2	CDS	CDS:EXON_MRNA	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.51608	4.35628	5.19648	0.00108676	7.35336e-4	0.0118659	0.00921643
chrX	25645894	25645980	19007761	0	-	0.651163	(0.59,1]	chrX	1617369	3	EXON_PSEUDO	EXON_PSEUDO	RANBP1P1	ENSG00000228519.3	ENST00000496795.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	53	2	3.51608	4.35628	5.19648	0.00108676	7.35336e-4	0.0118659	0.00921643
chr4	41943746	41943813	4809377	0	+	0.402985	(0.39,0.42]	chr4	396933	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000510383.1:ENST00000504986.6:ENST00000506794.1:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	4.34021	4.355985	4.37176	1.25102e-7	9.02539e-8	6.77099e-6	5.72301e-6
chr6	7881516	7881611	7587970	0	-	0.263158	[0,0.29]	chr6	578854	1	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.0735	4.355985	5.63847	0.00785095	1.9181e-6	0.0520241	6.93031e-5
chr10	24690848	24690947	11417252	0	-	0.323232	(0.29,0.33]	chr10	870239	201	INTRON	INTRON	ARHGAP21	ENSG00000107863.19	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000376410.7:ENST00000320481.10:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	15	2	4.2566	4.355969999999999	4.45534	0.00303129	0.00110984	0.0257942	0.0127344
chr2	169597793	169597892	2196294	0	+	0.313131	(0.29,0.33]	chr2	200946	47	INTRON	INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000530152.5:ENST00000677750.1:ENST00000676557.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.2566	4.355969999999999	4.45534	0.00303129	0.00110984	0.0257942	0.0127344
chr6	28144130	28144230	7105685	0	+	0.31	(0.29,0.33]	chr6	543566	4	SS3_PROX	SS3_PROX:INTRON	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6:ENST00000536028.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.2566	4.355969999999999	4.45534	0.00303129	0.00110984	0.0257942	0.0127344
chr8	9777031	9777129	9192930	0	+	0.295918	(0.29,0.33]	chr8	702351	4	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.2566	4.355969999999999	4.45534	0.00303129	0.00110984	0.0257942	0.0127344
chr10	26768921	26768992	11420871	0	-	0.422535	(0.42,0.455]	chr10	870556	2	CDS	CDS:EXON_MRNA	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.8515	4.35594	4.86038	0.0119089	3.34791e-4	0.0686664	0.00472923
chr10	58287560	58287650	11057350	0	+	0.422222	(0.42,0.455]	chr10	841551	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CISD1	ENSG00000122873.12	ENST00000333926.6:ENST00000464703.5:ENST00000489785.5:ENST00000488388.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.8515	4.35594	4.86038	0.0119089	3.34791e-4	0.0686664	0.00472923
chr4	13368371	13368464	5315124	0	-	0.430108	(0.42,0.455]	chr4	427964	8	UTR3	UTR3:EXON_MRNA:INTRON	RAB28	ENSG00000157869.16	ENST00000511649.5:ENST00000330852.10:ENST00000288723.9:ENST00000508274.5:ENST00000338176.8:ENST00000630951.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.8515	4.35594	4.86038	0.0119089	3.34791e-4	0.0686664	0.00472923
chrX	111759899	111759999	18826523	0	+	0.45	(0.42,0.455]	chrX	1604330	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000394780.8:ENST00000610588.4:ENST00000251943.8:ENST00000621367.4:ENST00000624161.3:ENST00000636363.1:ENST00000495283.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000436609.5:ENST00000461669.5:ENST00000623310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.8515	4.35594	4.86038	0.0119089	3.34791e-4	0.0686664	0.00472923
chr18	49491571	49491625	17119628	0	-	0.37037	(0.36,0.39]	chr18	1405598	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000581091.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	81	2	3.27479	4.355825	5.43686	5.51752e-5	6.16965e-10	0.00122694	6.81812e-8
chr1	15110438	15110538	65503	0	+	0.34	(0.33,0.36]	chr1	7191	59	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.02603	4.355815	4.6856	0.0071776	3.92435e-4	0.048188	0.00583618
chr10	68692507	68692606	11091128	0	+	0.333333	(0.33,0.36]	chr10	842935	8	UTR3	UTR3:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.02603	4.355815	4.6856	0.0071776	3.92435e-4	0.048188	0.00583618
chr20	57566093	57566190	17837278	0	+	0.350515	(0.33,0.36]	chr20	1508397	4	UTR3	UTR3:EXON_MRNA	PCK1	ENSG00000124253.11	ENST00000467047.1:ENST00000319441.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.02603	4.355815	4.6856	0.0071776	3.92435e-4	0.048188	0.00583618
chr3	40457360	40457363	3429561	0	+	0.333333	(0.33,0.36]	chr3	298301	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000465325.1:ENST00000396203.7:ENST00000416518.1:ENST00000435633.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.02603	4.355815	4.6856	0.0071776	3.92435e-4	0.048188	0.00583618
chr1	154978724	154978777	482017	0	+	0.490566	(0.49,0.53]	chr1	50166	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000477676.6:ENST00000474215.5:ENST00000473344.1:ENST00000471245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.23006	4.35562	5.48118	0.00253719	1.24248e-5	0.0233955	3.28918e-4
chr1	230279951	230280050	749806	0	+	0.515152	(0.49,0.53]	chr1	76088	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.23006	4.35562	5.48118	0.00253719	1.24248e-5	0.0233955	3.28918e-4
chr4	173292107	173292190	5233430	0	+	0.409639	(0.39,0.42]	chr4	421187	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5:ENST00000502407.1:ENST00000505308.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.93975	4.355405	4.77106	0.0105893	3.03764e-4	0.0644466	0.00472028
chr17	42422904	42422997	16548416	0	-	0.645161	(0.59,1]	chr17	1357387	4	CDS	CDS:EXON_MRNA	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr3	48601409	48601467	4168727	0	-	0.603448	(0.59,1]	chr3	349590	2	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000415995.5:ENST00000460105.1:ENST00000472438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr6	31779424	31779480	7662396	0	-	0.714286	(0.59,1]	chr6	585260	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000463184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr6	117999258	117999353	7354841	0	+	0.631579	(0.59,1]	chr6	565161	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	SLC35F1:RP11-632C17__A.1	ENSG00000196376.11:ENSG00000230202.1	ENST00000360388.9:ENST00000443998.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr7	64794387	64794477	8296549	0	+	0.644444	(0.59,1]	chr7	632317	1	UTR5	UTR5:EXON_MRNA	ZNF138	ENSG00000197008.10	ENST00000359735.7:ENST00000440155.6:ENST00000494380.5:ENST00000307355.12:ENST00000437743.1:ENST00000440598.2	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr7	101198190	101198277	8953545	0	-	0.666667	(0.59,1]	chr7	684607	1	CDS	CDS:EXON_MRNA	MOGAT3	ENSG00000106384.12	ENST00000223114.9:ENST00000379423.3:ENST00000440203.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr7	128846076	128846163	8522415	0	+	0.609195	(0.59,1]	chr7	650385	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.2353	4.355235	4.47517	0.0165254	0.00735659	0.0873033	0.0491503
chr11	47579091	47579158	11940487	0	+	0.761194	(0.59,1]	chr11	913272	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000529276.1:ENST00000528192.5:ENST00000534208.5:ENST00000530295.5:ENST00000263774.9:ENST00000534716.2:ENST00000533105.1:ENST00000524568.1:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	26	2	4.26354	4.355125	4.44671	0.0134233	0.00931497	0.0743429	0.0586162
chr4	41935217	41935306	4809288	0	+	0.651685	(0.59,1]	chr4	396911	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.26354	4.355125	4.44671	0.0134233	0.00931497	0.0743429	0.0586162
chr6	31780075	31780153	7662405	0	-	0.666667	(0.59,1]	chr6	585264	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.26354	4.355125	4.44671	0.0134233	0.00931497	0.0743429	0.0586162
chr1	84645078	84645176	1131602	0	-	0.387755	(0.36,0.39]	chr1	112678	15	UTR3	UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24194	4.35454	4.46714	0.00276729	0.00155822	0.0247437	0.0156889
chr6	41097509	41097609	7148311	0	+	0.39	(0.36,0.39]	chr6	551226	2	UTR3	UTR3:EXON_MRNA	NFYA	ENSG00000001167.15	ENST00000341376.11:ENST00000353205.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24194	4.35454	4.46714	0.00276729	0.00155822	0.0247437	0.0156889
chr16	2821370	2821437	15495171	0	+	0.537313	(0.53,0.59]	chr16	1227881	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000570629.5:ENST00000574813.5:ENST00000574265.1:ENST00000575739.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.30943	4.354215	5.399	0.0018255	3.02387e-5	0.0183913	6.78876e-4
chr2	219250844	219250942	3191523	0	-	0.571429	(0.53,0.59]	chr2	280988	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.30943	4.354215	5.399	0.0018255	3.02387e-5	0.0183913	6.78876e-4
chr17	16382301	16382399	16141810	0	+	0.55102	(0.53,0.59]	chr17	1300658	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBB	ENSG00000170315.14	ENST00000577640.1:ENST00000302182.8:ENST00000535788.1:ENST00000578649.1:ENST00000395839.5:ENST00000395837.1:ENST00000614404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	271	2	3.77983	4.354105	4.92838	1.00031e-8	5.07017e-12	7.75882e-7	1.0342e-9
chr1	9580140	9580234	34476	0	+	0.457447	(0.455,0.49]	chr1	3978	3	CDS	CDS:EXON_MRNA	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.56037	4.354055	5.14774	5.72551e-4	7.45457e-5	0.0078026	0.00142165
chr2	96186236	96186335	2789823	0	-	0.464646	(0.455,0.49]	chr2	248609	15	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	3.56037	4.354055	5.14774	5.72551e-4	7.45457e-5	0.0078026	0.00142165
chr21	45511168	45511226	18145940	0	+	0.655172	(0.59,1]	chr21	1539860	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	97	2	3.51144	4.35396	5.19648	7.35336e-4	1.99699e-5	0.00921643	4.86327e-4
chr18	47840127	47840227	17109794	0	-	0.34	(0.33,0.36]	chr18	1405054	313	UTR3	UTR3:EXON_MRNA	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.33896	4.353870000000001	4.36878	0.0021194	0.00182033	0.0198008	0.0183913
chr6	30070239	30070333	7110083	0	+	0.351064	(0.33,0.36]	chr6	544501	11	UTR3	UTR3:EXON_MRNA	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6:ENST00000376765.6:ENST00000376763.5:ENST00000376758.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.33896	4.353870000000001	4.36878	0.0021194	0.00182033	0.0198008	0.0183913
chr1	196689419	196689516	640974	0	+	0.360825	(0.36,0.39]	chr1	64457	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	3.89918	4.35383	4.80848	1.0624e-4	1.65455e-7	0.00205241	8.63103e-6
chr2	26236854	26236921	2566118	0	-	0.432836	(0.42,0.455]	chr2	230632	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	113	2	4.33013	4.353635	4.37714	1.26342e-7	6.38367e-9	7.69593e-6	5.23665e-7
chr11	9589194	9589293	11793803	0	+	0.282828	[0,0.29]	chr11	903118	7	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.28583	4.353365	5.4209	0.00346525	8.29716e-6	0.0293796	2.36305e-4
chr6	157318821	157318919	8042659	0	-	0.612245	(0.59,1]	chr6	614680	1	CDS	CDS:EXON_MRNA	TMEM242	ENSG00000215712.11	ENST00000400788.9:ENST00000367144.4	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	4.25966	4.353185	4.44671	0.00931497	2.95373e-5	0.0586162	6.69635e-4
chr1	201876430	201876530	661508	0	+	0.4	(0.39,0.42]	chr1	66335	3	UTR3	UTR3:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.14886	4.353045	4.55723	0.00415881	0.00117753	0.0325842	0.0127276
chr1	244706968	244707066	804421	0	+	0.408163	(0.39,0.42]	chr1	80056	13	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.14886	4.353045	4.55723	0.00415881	0.00117753	0.0325842	0.0127276
chr12	96014854	96014926	13485109	0	-	0.416667	(0.39,0.42]	chr12	1060505	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5:ENST00000548375.5:ENST00000547982.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.14886	4.353045	4.55723	0.00415881	0.00117753	0.0325842	0.0127276
chr12	121341902	121342002	13585152	0	-	0.42	(0.39,0.42]	chr12	1069621	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.14886	4.353045	4.55723	0.00415881	0.00117753	0.0325842	0.0127276
chr16	1700616	1700714	15488687	0	+	0.418367	(0.39,0.42]	chr16	1226190	5	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.14886	4.353045	4.55723	0.00415881	0.00117753	0.0325842	0.0127276
chr11	6616717	6616817	12249953	0	-	0.62	(0.59,1]	chr11	946856	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	226	2	4.1748	4.353015	4.53123	2.75625e-7	2.56542e-7	1.40938e-5	1.32929e-5
chr1	180114581	180114679	582475	0	+	0.428571	(0.42,0.455]	chr1	60512	36	UTR3	UTR3:EXON_MRNA	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.05954	4.35289	4.64624	0.00617886	8.75333e-4	0.0439741	0.0101169
chr12	57601701	57601796	12903754	0	+	0.452632	(0.42,0.455]	chr12	1005691	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIP4K2C	ENSG00000166908.18	ENST00000422156.7:ENST00000354947.10:ENST00000540759.6:ENST00000550465.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.05954	4.35289	4.64624	0.00617886	8.75333e-4	0.0439741	0.0101169
chr2	195728158	195728253	2290854	0	+	0.431579	(0.42,0.455]	chr2	207628	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.05954	4.35289	4.64624	0.00617886	8.75333e-4	0.0439741	0.0101169
chr22	22485108	22485207	18444733	0	-	0.434343	(0.42,0.455]	chr22	1572767	8	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.05954	4.35289	4.64624	0.00617886	8.75333e-4	0.0439741	0.0101169
chr5	31909186	31909285	5922438	0	+	0.424242	(0.42,0.455]	chr5	463991	1	INTRON	INTRON	PDZD2	ENSG00000133401.16	ENST00000438447.2:ENST00000502489.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.05954	4.35289	4.64624	0.00617886	8.75333e-4	0.0439741	0.0101169
chr11	5301846	5301946	12241105	0	-	0.49	(0.455,0.49]	chr11	946135	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	3.81624	4.352735	4.88923	1.48205e-4	9.45747e-8	0.00269793	5.31584e-6
chr12	64716740	64716819	13378759	0	-	0.481013	(0.455,0.49]	chr12	1054195	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	3.81624	4.352735	4.88923	1.48205e-4	9.45747e-8	0.00269793	5.31584e-6
chr11	60922065	60922165	11967049	0	+	0.71	(0.59,1]	chr11	916467	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.01792	4.352645	5.68737	0.00111911	8.79466e-5	0.0121894	0.00178337
chr20	57508605	57508696	18021654	0	-	0.461538	(0.455,0.49]	chr20	1527399	1	CDS	CDS:UTR3:EXON_MRNA	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	111	2	3.55829	4.35243	5.14657	4.15156e-5	7.23269e-11	9.7509e-4	1.02202e-8
chr1	42931045	42931125	967030	0	-	0.55	(0.53,0.59]	chr1	101891	1	CDS	CDS:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	196	2	3.98864	4.35236	4.71608	2.31578e-7	4.60177e-11	1.29506e-5	6.8231e-9
chr12	21635641	21635709	13236605	0	-	0.485294	(0.455,0.49]	chr12	1037943	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000648372.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	110	2	4.12242	4.352335	4.58225	5.56989e-8	1.58006e-8	3.71931e-6	1.14917e-6
chr15	65562773	65562828	14980012	0	+	0.309091	(0.29,0.33]	chr15	1177573	1	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.24933	4.352335	4.45534	0.00110984	1.02924e-5	0.0127344	2.83837e-4
chr10	73765799	73765857	11115809	0	+	0.5	(0.49,0.53]	chr10	845881	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.42954	4.352155	5.27477	0.00105489	4.14521e-5	0.0123035	8.8376e-4
chr15	58610443	58610517	15310810	0	-	0.554054	(0.53,0.59]	chr15	1208287	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.43342	4.352145	5.27087	8.93729e-5	5.9416e-5	0.00165837	0.00130151
chr15	63155652	63155731	15333591	0	-	0.468354	(0.455,0.49]	chr15	1210101	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS27L	ENSG00000185088.14	ENST00000559763.1:ENST00000330964.10:ENST00000635699.1:ENST00000482846.1:ENST00000455271.5:ENST00000462430.5:ENST00000411926.1:ENST00000439025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.35515	4.351850000000001	6.34855	0.0140117	1.09383e-8	0.0767536	9.21346e-7
chr17	51161176	51161276	16266540	0	+	0.59	(0.53,0.59]	chr17	1319590	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000480143.5:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	3.17542	4.35154	5.52766	3.78824e-4	1.38993e-5	0.00525548	3.94563e-4
chr12	113374523	113374574	13101590	0	+	0.568627	(0.53,0.59]	chr12	1022401	2	CDS	CDS:UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.1234	4.351355	5.57931	0.00390623	1.05602e-5	0.0322851	2.89015e-4
chr16	70252351	70252443	15996864	0	-	0.445652	(0.42,0.455]	chr16	1284590	5	UTR3	UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	3.71365	4.351325	4.989	2.63375e-4	4.29924e-8	0.00427022	2.69981e-6
chr6	27132469	27132559	7648715	0	-	0.566667	(0.53,0.59]	chr6	582717	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1:ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	19	434	2	3.87556	4.351319999999999	4.82708	1.50614e-10	1e-12	1.9482e-8	2.46312e-10
chr10	80205495	80205572	11593721	0	-	0.779221	(0.59,1]	chr10	883125	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.53648	4.35112	5.16576	0.00107706	6.55716e-4	0.0124943	0.0080931
chr3	129171155	129171232	4443903	0	-	0.571429	(0.53,0.59]	chr3	369323	2	CDS	CDS:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	81	2	2.68125	4.35109	6.02093	1.14991e-4	5.66478e-7	0.00203853	2.7364e-5
chr3	13353606	13353660	4046587	0	-	0.537037	(0.53,0.59]	chr3	339633	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000479519.5:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	115	2	2.87264	4.35098	5.82932	0.00168899	3.27953e-11	0.0175515	5.0249e-9
chr5	75351232	75351315	6037062	0	+	0.409639	(0.39,0.42]	chr5	473625	3	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	3.76141	4.350755	4.9401	2.14058e-4	5.34407e-10	0.00359478	6.02407e-8
chr1	77161593	77161652	1109912	0	-	0.40678	(0.39,0.42]	chr1	111548	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5:ENST00000359130.1:ENST00000478391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	3.93001	4.350535	4.77106	3.03764e-4	3.15326e-6	0.00472028	1.05314e-4
chr20	5119698	5119798	17887836	0	-	0.59	(0.53,0.59]	chr20	1514098	1	CDS_START	CDS_START:CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.66389	4.35047	5.03705	0.00020199200000000001	2.13854e-5	0.00317801	5.67072e-4
chr3	49025197	49025269	4171680	0	-	0.597222	(0.59,1]	chr3	350221	2	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000484872.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000481274.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.56392	4.350355	5.13679	9.28022e-4	8.86707e-4	0.0111748	0.0101815
chr12	6510074	6510133	12713317	0	+	0.38983	(0.36,0.39]	chr12	986515	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	3.96717	4.350315	4.73346	3.2963e-4	6.17763e-5	0.00504024	0.00122919
chr12	112022149	112022167	13094252	0	+	0.388889	(0.36,0.39]	chr12	1021468	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.96717	4.350315	4.73346	3.2963e-4	6.17763e-5	0.00504024	0.00122919
chr4	87336799	87336894	5517995	0	-	0.305263	(0.29,0.33]	chr4	441925	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-529H2.2:HSD17B11	ENSG00000255723.1:ENSG00000198189.11	ENST00000508163.1:ENST00000358290.9	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	55	2	3.77554	4.35022	4.9249	1.78847e-5	5.65409e-8	4.90113e-4	3.41755e-6
chr8	143992741	143992841	9649812	0	+	0.51	(0.49,0.53]	chr8	731412	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000534791.5:ENST00000533044.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	122	2	4.25184	4.350165	4.44849	2.59344e-7	3.40159e-9	1.42291e-5	3.05786e-7
chr17	35710233	35710320	16207362	0	+	0.390805	(0.39,0.42]	chr17	1309137	1	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.0503	4.349740000000001	5.64918	0.00570576	3.47137e-6	0.0424438	1.13687e-4
chr2	54973558	54973621	2666111	0	-	0.333333	(0.33,0.36]	chr2	238473	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000491592.1:ENST00000485749.1:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	244	2	3.36058	4.349445	5.33831	3.66613e-5	1e-12	8.83327e-4	2.25522e-10
chr5	233476	233560	5848006	0	+	0.464286	(0.455,0.49]	chr5	459562	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000514233.1:ENST00000515752.5:ENST00000512962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.93794	4.34921	4.76048	3.99985e-4	7.43966e-5	0.00588767	0.00142165
chr12	93408850	93408949	13472802	0	-	0.323232	(0.29,0.33]	chr12	1059385	33	UTR3	UTR3:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.88207	4.349125	4.81618	2.74489e-4	1.56259e-4	0.00406677	0.00282486
chr2	214847127	214847206	2374860	0	+	0.56962	(0.53,0.59]	chr2	213368	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SNHG31:RPL10P6	ENSG00000229267.3:ENSG00000230076.1	ENST00000655899.1:ENST00000670391.1:ENST00000664818.1:ENST00000607412.1:ENST00000457497.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	141	2	4.17197	4.3490850000000005	4.5262	5.8915e-7	2.24887e-9	2.82242e-5	2.13668e-7
chr7	103540282	103540368	8963663	0	-	0.534884	(0.53,0.59]	chr7	686166	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	3.92573	4.348975	4.77222	6.67251e-4	8.62301e-5	0.00867533	0.00160749
chr11	32143725	32143825	12338414	0	-	0.49	(0.455,0.49]	chr11	953621	309	INTRON	INTRON	THEM7P	ENSG00000227160.3	ENST00000419556.2	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene	8	233	2	3.19847	4.34857	5.49867	1.88969e-5	1e-12	5.12059e-4	2.25522e-10
chr3	54626114	54626214	3490838	0	+	0.49	(0.455,0.49]	chr3	305903	439	INTRON	INTRON	CACNA2D3	ENSG00000157445.15	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000468658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	4.0204	4.347735	4.67507	0.00736097	5.16001e-7	0.0490627	2.27446e-5
chr11	764313	764413	11758802	0	+	0.55	(0.53,0.59]	chr11	898438	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TALDO1	ENSG00000177156.11	ENST00000528097.5:ENST00000319006.8:ENST00000530666.1:ENST00000532202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	237	2	4.10836	4.347525	4.58669	1.42256e-8	3.38423e-11	1.15035e-6	5.17168e-9
chr17	7576606	7576692	16105664	0	+	0.534884	(0.53,0.59]	chr17	1296957	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000577731.1:ENST00000583389.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	6	160	2	4.32347	4.3474450000000004	4.37142	1.39207e-8	8.90384e-9	1.03246e-6	7.65338e-7
chr1	54200511	54200589	200305	0	+	0.589744	(0.53,0.59]	chr1	25572	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	3.29588	4.34744	5.399	1.96478e-4	3.02387e-5	0.00335505	6.78876e-4
chr11	65125487	65125580	11982533	0	+	0.569892	(0.53,0.59]	chr11	919914	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL49	ENSG00000149792.9	ENST00000524482.5:ENST00000528529.1:ENST00000534078.1:ENST00000526319.5:ENST00000279242.7:ENST00000526171.5:ENST00000531705.1:ENST00000533943.1:ENST00000532671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	4.13569	4.347145	4.5586	0.00161229	2.50241e-5	0.0169168	5.82427e-4
chr9	33038684	33038743	10233736	0	+	0.38983	(0.36,0.39]	chr9	769284	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJA1	ENSG00000086061.16	ENST00000330899.5:ENST00000495015.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.88918	4.34706	5.80494	0.00212816	9.78955e-7	0.0206577	3.91899e-5
chr5	171387778	171387863	6384183	0	+	0.611765	(0.59,1]	chr5	495786	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	270	2	4.19888	4.34699	4.4951	3.07315e-7	2.79841e-8	1.64168e-5	1.8758e-6
chr9	109108452	109108511	10788675	0	-	0.355932	(0.33,0.36]	chr9	816902	1	CDS	CDS:UTR5:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	4.17122	4.34694	4.52266	8.34989e-4	1.72402e-5	0.0102956	4.33531e-4
chr1	23392583	23392683	895303	0	-	0.46	(0.455,0.49]	chr1	92927	48	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.71798	4.346615	4.97525	0.0202679	1.38474e-4	0.0984041	0.00254294
chr11	64316779	64316860	12417459	0	-	0.419753	(0.39,0.42]	chr11	962524	5	UTR3	UTR3:EXON_MRNA	TRMT112	ENSG00000173113.7	ENST00000544844.6:ENST00000535750.5:ENST00000535126.1:ENST00000537918.1:ENST00000308774.6:ENST00000539854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	90	2	3.12234	4.34657	5.5708	1.28898e-4	1.95394e-10	0.0024153	2.46454e-8
chr16	24215904	24216003	15599246	0	+	0.292929	(0.29,0.33]	chr16	1236920	12	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	8	130	2	3.5929	4.34582	5.09874	4.71812e-7	2.30804e-12	2.34808e-5	4.75065e-10
chr22	26525869	26525968	18453514	0	-	0.444444	(0.42,0.455]	chr22	1574325	40	UTR3	UTR3:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.17397	4.34536	5.51675	0.0031821	5.14372e-6	0.0267094	1.73456e-4
chr4	108622566	108622618	5038310	0	+	0.5	(0.49,0.53]	chr4	409830	2	CDS	CDS:EXON_MRNA	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5:ENST00000394668.2:ENST00000504231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	216	2	3.41504	4.3453349999999995	5.27563	2.11959e-8	1.77166e-11	1.48013e-6	3.16323e-9
chr1	19179135	19179220	876756	0	-	0.541176	(0.53,0.59]	chr1	90334	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	4.16026	4.345245	4.53023	1.83321e-6	6.52435e-7	7.37353e-5	2.7837e-5
chr12	98534052	98534147	13036718	0	+	0.442105	(0.42,0.455]	chr12	1014954	14	CDS	CDS:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.90616	4.34498	5.7838	0.00162359	1.6512e-6	0.0169915	6.0825e-5
chr22	19968926	19969021	18296527	0	+	0.2	[0,0.29]	chr22	1553022	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	3.91571	4.344905	4.7741	1.5798e-4	1.99118e-7	0.00285004	1.01119e-5
chr16	67228796	67228820	15708878	0	+	0.458333	(0.455,0.49]	chr16	1249925	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM208	ENSG00000168701.19	ENST00000567193.5:ENST00000563168.1:ENST00000563953.5:ENST00000304800.14:ENST00000561586.5:ENST00000562235.5:ENST00000565201.1:ENST00000563426.5:ENST00000563271.5:ENST00000564649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.81275	4.34454	4.87633	0.0138827	2.95855e-4	0.0760883	0.00432147
chr17	28553847	28553940	16485694	0	-	0.483871	(0.455,0.49]	chr17	1347682	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.81275	4.34454	4.87633	0.0138827	2.95855e-4	0.0760883	0.00432147
chr19	43772088	43772103	17580600	0	-	0.466667	(0.455,0.49]	chr19	1479112	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000648053.1:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.81275	4.34454	4.87633	0.0138827	2.95855e-4	0.0760883	0.00432147
chr4	73077354	73077443	5465980	0	-	0.460674	(0.455,0.49]	chr4	437732	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000510127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.81275	4.34454	4.87633	0.0138827	2.95855e-4	0.0760883	0.00432147
chr4	110051337	110051437	5595066	0	-	0.46	(0.455,0.49]	chr4	446474	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.81275	4.34454	4.87633	0.0138827	2.95855e-4	0.0760883	0.00432147
chr5	109713689	109713774	6142348	0	+	0.458824	(0.455,0.49]	chr5	479913	3	CDS	CDS:EXON_MRNA	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.81275	4.34454	4.87633	0.0138827	2.95855e-4	0.0760883	0.00432147
chr19	41341882	41341956	17568600	0	-	0.648649	(0.59,1]	chr19	1476891	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	85	2	2.60638	4.34435	6.08232	0.00223524	8.23309e-6	0.021278	2.34786e-4
chr3	196348950	196349049	4664954	0	-	0.292929	(0.29,0.33]	chr3	385869	14	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.76009	4.3439049999999995	4.92772	3.08518e-4	1.56621e-4	0.00476847	0.00259991
chr6	30653013	30653111	7112038	0	+	0.316327	(0.29,0.33]	chr6	545034	2	UTR3	UTR3:EXON_MRNA	C6orf136	ENSG00000204564.12	ENST00000293604.10:ENST00000488383.5:ENST00000376473.9:ENST00000651131.1:ENST00000446773.6:ENST00000465699.5:ENST00000467801.2:ENST00000468785.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.73761	4.3438300000000005	4.95005	2.33029e-4	9.78718e-5	0.00355688	0.0019344
chrX	40605854	40605953	18667639	0	+	0.292929	(0.29,0.33]	chrX	1591888	2	UTR3	UTR3:EXON_MRNA	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.73761	4.3438300000000005	4.95005	2.33029e-4	9.78718e-5	0.00355688	0.0019344
chr1	107505202	107505284	392060	0	+	0.512195	(0.49,0.53]	chr1	37755	1	EXON_PSEUDO	EXON_PSEUDO	NDUFA4P1	ENSG00000224550.1	ENST00000416095.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	3.8967	4.343780000000001	4.79086	0.0128791	4.20783e-4	0.0725185	0.00611538
chr17	63940577	63940673	16635601	0	-	0.65625	(0.59,1]	chr17	1367889	22	UTR3	UTR3:EXON_MRNA	SCN4A	ENSG00000007314.12	ENST00000435607.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.11672	4.343545	4.57037	0.0222273	0.0054994	0.105595	0.0402071
chr3	136327154	136327204	3763128	0	+	0.6	(0.59,1]	chr3	321887	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	4.11672	4.343545	4.57037	0.0222273	0.0054994	0.105595	0.0402071
chr9	33447530	33447596	10632611	0	-	0.848485	(0.59,1]	chr9	803609	1	UTR5	UTR5:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000645858.1:ENST00000463983.5:ENST00000643650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	4.11672	4.343545	4.57037	0.0222273	0.0054994	0.105595	0.0402071
chrX	48905049	48905136	19063522	0	-	0.62069	(0.59,1]	chrX	1620558	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	4.11672	4.343545	4.57037	0.0222273	0.0054994	0.105595	0.0402071
chr1	40071719	40071812	151977	0	+	0.505376	(0.49,0.53]	chr1	19043	3	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	7	136	2	3.871	4.343465	4.81593	1.6567e-7	7.77838e-9	9.74137e-6	6.24709e-7
chr7	5528616	5528716	8659486	0	-	0.56	(0.53,0.59]	chr7	662117	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	759	2	3.83564	4.343425	4.85121	4.19659e-11	1e-12	6.29726e-9	2.46312e-10
chr12	6620596	6620688	13187592	0	-	0.728261	(0.59,1]	chr12	1032446	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LPAR5	ENSG00000184574.10	ENST00000329858.9:ENST00000431922.1:ENST00000540335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	4.14483	4.34333	4.54183	0.0183207	0.0070583	0.0945306	0.0478044
chr14	19402574	19402663	14515965	0	-	0.617977	(0.59,1]	chr14	1136244	2	UTR3	UTR3:EXON_MRNA	POTEG	ENSG00000187537.13	ENST00000547848.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	4.14483	4.34333	4.54183	0.0183207	0.0070583	0.0945306	0.0478044
chr14	105145892	105145973	14800012	0	-	0.703704	(0.59,1]	chr14	1160116	3	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.14483	4.34333	4.54183	0.0183207	0.0070583	0.0945306	0.0478044
chr19	44914670	44914733	17349738	0	+	0.603175	(0.59,1]	chr19	1439248	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTB-129P6.7:APOC1	ENSG00000280087.1:ENSG00000130208.10	ENST00000623895.1:ENST00000588750.5:ENST00000588802.5:ENST00000592535.6:ENST00000592885.5:ENST00000589781.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	0	26	2	4.14483	4.34333	4.54183	0.0183207	0.0070583	0.0945306	0.0478044
chr9	133153905	133153995	10879523	0	-	0.633333	(0.59,1]	chr9	825595	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	4.14483	4.34333	4.54183	0.0183207	0.0070583	0.0945306	0.0478044
chr2	121478622	121478722	2861903	0	-	0.57	(0.53,0.59]	chr2	255587	83	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.81839	4.34331	4.86823	0.0184435	4.35895e-4	0.0945306	0.00623608
chr1	77129298	77129390	309376	0	+	0.554348	(0.53,0.59]	chr1	31621	3	EXON_PSEUDO	EXON_PSEUDO	RP4-706A16.3	ENSG00000226084.5	ENST00000471722.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr17	4798008	4798080	16093298	0	+	0.569444	(0.53,0.59]	chr17	1294592	1	CDS	CDS:UTR3:EXON_MRNA	PSMB6	ENSG00000142507.10	ENST00000614486.4:ENST00000270586.8:ENST00000571309.1:ENST00000575643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr17	41893032	41893103	16544014	0	-	0.577465	(0.53,0.59]	chr17	1356522	1	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr19	3823145	3823245	17429543	0	-	0.59	(0.53,0.59]	chr19	1454559	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZFR2	ENSG00000105278.12	ENST00000262961.9:ENST00000438164.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr2	74363293	74363360	2742053	0	-	0.552239	(0.53,0.59]	chr2	244148	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-287D1.3:DCTN1	ENSG00000264324.1:ENSG00000204843.13	ENST00000451608.2:ENST00000394003.7:ENST00000361874.8:ENST00000680606.1:ENST00000628224.3:ENST00000497666.1:ENST00000491465.5:ENST00000434055.5:ENST00000409240.5:ENST00000409438.5:ENST00000633691.1:ENST00000409868.5:ENST00000466110.5:ENST00000409567.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr3	49125406	49125484	4172767	0	-	0.589744	(0.53,0.59]	chr3	350558	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000464891.5:ENST00000483057.1:ENST00000486298.5:ENST00000477701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr4	108650755	108650794	5038394	0	+	0.538462	(0.53,0.59]	chr4	409846	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000510556.1:ENST00000505745.1:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr4	150828179	150828267	5731125	0	-	0.545455	(0.53,0.59]	chr4	452857	1	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr6	44152592	44152645	7161020	0	+	0.584906	(0.53,0.59]	chr6	553608	1	CDS	CDS:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr8	140526448	140526548	10132107	0	-	0.54	(0.53,0.59]	chr8	760954	64	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.82407	4.343195	4.86232	0.0179666	4.57805e-4	0.0918323	0.00608573
chr3	14131579	14131674	3319377	0	+	0.515789	(0.49,0.53]	chr3	292055	1	CDS	CDS:UTR3:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000432444.1:ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	4.27961	4.34314	4.40667	9.03426e-6	3.62526e-6	2.53429e-4	1.29307e-4
chr16	21403481	21403573	15888065	0	-	0.51087	(0.49,0.53]	chr16	1271076	1	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chr19	12559755	12559848	17236698	0	+	0.526882	(0.49,0.53]	chr19	1420584	3	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chr22	21623935	21624034	18303201	0	+	0.525253	(0.49,0.53]	chr22	1554195	24	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chr3	123271622	123271722	3708201	0	+	0.5	(0.49,0.53]	chr3	316924	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEC22A	ENSG00000121542.12	ENST00000492595.6:ENST00000473494.6:ENST00000481965.6:ENST00000309934.4	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chr7	55645809	55645904	8289087	0	+	0.494737	(0.49,0.53]	chr7	631304	3	EXON_PSEUDO	EXON_PSEUDO	TUBBP6	ENSG00000235207.1	ENST00000416519.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chr9	128187917	128187934	10863936	0	-	0.529412	(0.49,0.53]	chr9	823449	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chrX	49194165	49194252	19065339	0	-	0.528736	(0.49,0.53]	chrX	1621095	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SYP	ENSG00000102003.11	ENST00000263233.9:ENST00000472598.5:ENST00000376303.6:ENST00000479808.5:ENST00000469389.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.94177	4.343075	4.74438	0.0104929	5.91752e-4	0.063428	0.00743488
chr16	31528139	31528214	15635490	0	+	0.466667	(0.455,0.49]	chr16	1241818	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AHSP	ENSG00000169877.10	ENST00000302312.9:ENST00000569954.1:ENST00000564707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.92463	4.342555	4.76048	0.0113417	3.99985e-4	0.0665375	0.00588767
chr4	507893	507993	4676326	0	+	0.48	(0.455,0.49]	chr4	387152	3	SS5_PROX	SS5_PROX:INTRON	PIGG	ENSG00000174227.16	ENST00000453061.7:ENST00000504187.5:ENST00000310340.9:ENST00000504346.5:ENST00000503111.5:ENST00000383028.8:ENST00000506402.5:ENST00000509768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.92463	4.342555	4.76048	0.0113417	3.99985e-4	0.0665375	0.00588767
chr6	143136957	143136990	7445654	0	+	0.484848	(0.455,0.49]	chr6	569856	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.92463	4.342555	4.76048	0.0113417	3.99985e-4	0.0665375	0.00588767
chr1	247229939	247230036	813738	0	+	0.43299	(0.42,0.455]	chr1	80509	1	EXON_PSEUDO	EXON_PSEUDO	RP11-488L18.1	ENSG00000214144.3	ENST00000397642.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	33	2	3.19078	4.34253	5.49428	0.00310864	1.07978e-5	0.0274272	2.9314e-4
chr20	35654332	35654431	17955002	0	-	0.434343	(0.42,0.455]	chr20	1521109	9	CDS	CDS:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.19078	4.34253	5.49428	0.00310864	1.07978e-5	0.0274272	2.9314e-4
chr8	96879935	96880005	9502857	0	+	0.442857	(0.42,0.455]	chr8	722608	3	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.19078	4.34253	5.49428	0.00310864	1.07978e-5	0.0274272	2.9314e-4
chr20	4699507	4699601	17661020	0	+	0.606383	(0.59,1]	chr20	1493235	3	CDS	CDS:EXON_MRNA	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.1277	4.342255	5.55681	0.00490589	1.60495e-4	0.0366648	0.00286914
chr12	42223249	42223349	13301046	0	-	0.29	[0,0.29]	chr12	1042551	104	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.1103	4.34223	4.57416	0.00493104	6.75561e-4	0.0366648	0.00873562
chr16	81711565	81711663	15772105	0	+	0.214286	[0,0.29]	chr16	1255597	19	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.1103	4.34223	4.57416	0.00493104	6.75561e-4	0.0366648	0.00873562
chr6	24650607	24650697	7638588	0	-	0.266667	[0,0.29]	chr6	581756	8	UTR3	UTR3:EXON_MRNA	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.1103	4.34223	4.57416	0.00493104	6.75561e-4	0.0366648	0.00873562
chr7	152215638	152215737	9135736	0	-	0.282828	[0,0.29]	chr7	698466	68	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000684550.1:ENST00000489110.2:ENST00000681838.1:ENST00000683490.1:ENST00000684623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.1103	4.34223	4.57416	0.00493104	6.75561e-4	0.0366648	0.00873562
chr19	41352944	41353044	17568715	0	-	0.73	(0.59,1]	chr19	1476912	1	CDS_START	CDS_START:CDS:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.47837	4.342225	6.20608	0.00970721	4.1102e-6	0.0608296	1.31763e-4
chr7	149019059	149019128	9124897	0	-	0.550725	(0.53,0.59]	chr7	696992	2	CDS	CDS:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000413966.1	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	3.66389	4.34218	5.02047	2.13854e-5	4.49833e-8	5.67072e-4	2.80849e-6
chr8	70596262	70596321	9881508	0	-	0.440678	(0.42,0.455]	chr8	746949	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.34191	4.342105	6.3423	0.0159091	2.51668e-8	0.0854674	1.71825e-6
chr8	43129796	43129895	9308572	0	+	0.515152	(0.49,0.53]	chr8	712880	71	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.1249	4.3420950000000005	4.55929	0.00116196	2.4461e-5	0.0130851	5.72214e-4
chr4	94465870	94465970	4983252	0	+	0.38	(0.36,0.39]	chr4	407359	88	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.58476	4.34208	5.0994	5.01956e-4	4.68763e-5	0.00653592	0.00107286
chr13	113310708	113310787	13908285	0	+	0.379747	(0.36,0.39]	chr13	1090341	1	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	4.09565	4.341559999999999	4.58747	6.55819e-4	2.81403e-5	0.00860229	6.42183e-4
chr1	155169786	155169857	1306437	0	-	0.549296	(0.53,0.59]	chr1	131774	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRTCAP2:RP11-201K10.3	ENSG00000163463.13:ENSG00000273088.2	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000463527.5:ENST00000473363.3:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	136	2	4.33559	4.341505	4.34742	1.5084e-7	1.22377e-8	7.98925e-6	1.00873e-6
chr11	3827074	3827172	12238977	0	-	0.540816	(0.53,0.59]	chr11	945691	2	UTR3	UTR3:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	4.19055	4.341425	4.4923	2.39218e-6	4.3974e-8	9.1799e-5	2.75435e-6
chr13	95214470	95214570	14111337	0	-	0.36	(0.33,0.36]	chr13	1104469	33	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	4.03706	4.341295000000001	4.64553	6.69086e-4	5.18043e-5	0.00820018	0.00115752
chr16	10533004	10533092	15850211	0	-	0.477273	(0.455,0.49]	chr16	1265814	1	CDS	CDS:EXON_MRNA	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000536829.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.0204	4.3412500000000005	4.6621	0.00736097	7.84472e-4	0.0490627	0.00927662
chr16	74452055	74452131	16030987	0	-	0.473684	(0.455,0.49]	chr16	1287250	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.0204	4.3412500000000005	4.6621	0.00736097	7.84472e-4	0.0490627	0.00927662
chr17	80602642	80602737	16705375	0	-	0.484211	(0.455,0.49]	chr17	1376798	2	EXON_PSEUDO	EXON_PSEUDO	RPL31P7	ENSG00000232083.3	ENST00000448339.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.0204	4.3412500000000005	4.6621	0.00736097	7.84472e-4	0.0490627	0.00927662
chr5	96985079	96985148	6118421	0	+	0.463768	(0.455,0.49]	chr5	478782	1	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.0204	4.3412500000000005	4.6621	0.00736097	7.84472e-4	0.0490627	0.00927662
chr10	96544140	96544206	11640327	0	-	0.469697	(0.455,0.49]	chr10	886593	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000490192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	4.17407	4.341060000000001	4.50805	0.00122223	1.754e-5	0.0135383	4.38078e-4
chr16	22535302	22535400	15591479	0	+	0.581633	(0.53,0.59]	chr16	1236299	17	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	3.8188	4.34056	4.86232	4.57805e-4	1.54941e-4	0.00608573	0.0028049
chr17	59673709	59673772	16295369	0	+	0.253968	[0,0.29]	chr17	1321691	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	4.10683	4.340495000000001	4.57416	6.75561e-4	8.26613e-7	0.00873562	3.40203e-5
chr5	146140460	146140560	6891322	0	-	0.46	(0.455,0.49]	chr5	527511	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	3.17056	4.340495000000001	5.51043	4.1243e-4	9.08728e-6	0.00604953	2.53877e-4
chr19	1171035	1171134	17418192	0	-	0.525253	(0.49,0.53]	chr19	1452279	20	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.69037	4.340355	4.99034	0.0226513	1.6002e-4	0.10505	0.00286408
chr5	71657831	71657928	6026822	0	+	0.525773	(0.49,0.53]	chr5	472497	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.69037	4.340355	4.99034	0.0226513	1.6002e-4	0.10505	0.00286408
chr5	154053342	154053432	6310060	0	+	0.5	(0.49,0.53]	chr5	492202	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000439768.2:ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.69037	4.340355	4.99034	0.0226513	1.6002e-4	0.10505	0.00286408
chrX	92114367	92114461	19142685	0	-	0.521277	(0.49,0.53]	chrX	1627984	13	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	3.69037	4.340355	4.99034	0.0226513	1.6002e-4	0.10505	0.00286408
chr11	119095394	119095467	12626604	0	-	0.589041	(0.53,0.59]	chr11	979849	1	UTR5	UTR5:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	3.0459	4.34032	5.63474	1.68929e-4	7.53339e-6	0.00297945	2.17987e-4
chr1	68242764	68242861	1082109	0	-	0.412371	(0.39,0.42]	chr1	110347	4	EXON_PSEUDO	EXON_PSEUDO	RPS7P4	ENSG00000229133.1	ENST00000444127.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	42	2	3.57294	4.340275	5.10761	5.12039e-5	3.67751e-5	0.00114668	8.00584e-4
chr1	23692635	23692735	98632	0	+	0.56	(0.53,0.59]	chr1	11412	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2:ENST00000482370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	1470	2	3.86458	4.340255	4.81593	6.17495e-12	1e-12	1.23424e-9	2.25522e-10
chr17	51161745	51161845	16266547	0	+	0.48	(0.455,0.49]	chr17	1319593	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	107	2	4.14173	4.3402449999999995	4.53876	1.31171e-6	7.67408e-9	5.53834e-5	6.18754e-7
chr12	46206079	46206162	13313624	0	-	0.493976	(0.49,0.53]	chr12	1043514	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.15207	4.34022	5.52837	0.00347189	7.50805e-6	0.0286293	2.3779e-4
chr5	154052990	154053062	6310056	0	+	0.527778	(0.49,0.53]	chr5	492200	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000439768.2:ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	3.15207	4.34022	5.52837	0.00347189	7.50805e-6	0.0286293	2.3779e-4
chr7	103539077	103539160	8963649	0	-	0.506024	(0.49,0.53]	chr7	686160	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.33324	4.34007	5.3469	0.00162947	2.75121e-5	0.0169972	6.30607e-4
chr6	27479632	27479732	7104718	0	+	0.51	(0.49,0.53]	chr6	543403	40	INTRON	INTRON	XXbac-BPGBPG34I8.5	ENSG00000286652.1	ENST00000663193.1	lncRNA	lncRNA	lncRNA	lncRNA	542	11009	2	4.05743	4.340025000000001	4.62262	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	171553345	171553422	2207382	0	+	0.467532	(0.455,0.49]	chr2	201993	1	CDS	CDS:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000321348.9:ENST00000375252.3:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.63872	4.339895	6.04107	0.00510378	2.38066e-7	0.0390492	1.17461e-5
chr1	42762398	42762475	966600	0	-	0.493506	(0.49,0.53]	chr1	101779	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1:ENST00000372526.2:ENST00000492956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.73494	4.339285	4.94363	0.0189345	2.3417e-4	0.0934721	0.00355764
chr2	171554649	171554727	2207397	0	+	0.512821	(0.49,0.53]	chr2	202001	1	CDS	CDS:UTR3:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000321348.9:ENST00000375252.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.73494	4.339285	4.94363	0.0189345	2.3417e-4	0.0934721	0.00355764
chr7	27142224	27142322	8185632	0	+	0.520408	(0.49,0.53]	chr7	624684	13	INTRON	INTRON	HOXA-AS3	ENSG00000254369.6	ENST00000518848.5:ENST00000521197.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.73494	4.339285	4.94363	0.0189345	2.3417e-4	0.0934721	0.00355764
chr9	33048181	33048258	10631191	0	-	0.493506	(0.49,0.53]	chr9	803371	2	CDS	CDS:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.73494	4.339285	4.94363	0.0189345	2.3417e-4	0.0934721	0.00355764
chr9	125338886	125338985	10461513	0	+	0.313131	(0.29,0.33]	chr9	788101	9	INTRON	INTRON	GAPVD1	ENSG00000165219.22	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000265956.8:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	3.59441	4.338855000000001	5.0833	4.57622e-5	3.40774e-5	0.00105479	7.50473e-4
chr22	41674932	41675032	18520235	0	-	0.49	(0.455,0.49]	chr22	1581351	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	3.96464	4.338845	4.71305	6.27408e-5	3.85068e-7	0.00135074	1.76303e-5
chr8	30069725	30069825	9780521	0	-	0.48	(0.455,0.49]	chr8	739520	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000522794.1:ENST00000522055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	3.96464	4.338845	4.71305	6.27408e-5	3.85068e-7	0.00135074	1.76303e-5
chr13	46126607	46126705	14009606	0	-	0.44898	(0.42,0.455]	chr13	1098488	8	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.56514	4.33866	5.11218	6.01815e-5	3.86623e-5	0.00130886	8.37229e-4
chr11	61810752	61810852	12406023	0	-	0.53	(0.49,0.53]	chr11	960615	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	26	550	2	3.77289	4.338525	4.90416	9.67993e-11	1e-12	1.45984e-8	2.25522e-10
chr12	104349215	104349314	13059146	0	+	0.333333	(0.33,0.36]	chr12	1017716	9	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	3.7554	4.33843	4.92146	1.62733e-5	6.09565e-8	4.52905e-4	3.65657e-6
chr11	62884631	62884690	11974451	0	+	0.474576	(0.455,0.49]	chr11	918060	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000457660.6:ENST00000546312.5:ENST00000542922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	255	2	3.51156	4.33841	5.16526	1.79375e-7	1e-12	1.04364e-5	2.25522e-10
chr6	30720254	30720351	7112174	0	+	0.773196	(0.59,1]	chr6	545049	23	INTRON	INTRON	TUBB	ENSG00000196230.14	ENST00000681435.1	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	4.27565	4.33839	4.40113	1.5917e-5	1.0823e-6	4.44589e-4	4.28015e-5
chr12	103942552	103942633	13056869	0	+	0.345679	(0.33,0.36]	chr12	1017345	1	CDS	CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	618	2	4.30623	4.338385000000001	4.37054	1e-12	1e-12	2.46312e-10	2.25522e-10
chr5	134661492	134661586	6230190	0	+	0.329787	(0.29,0.33]	chr5	485158	5	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.47125	4.338265	5.20528	7.49757e-5	2.18753e-5	0.00142868	5.75389e-4
chr4	87372708	87372761	5518361	0	-	0.566038	(0.53,0.59]	chr4	441952	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.20874	4.33818	5.46762	0.00278422	1.97761e-5	0.0241009	5.29643e-4
chr11	112087914	112087973	12136264	0	+	0.542373	(0.53,0.59]	chr11	934874	2	CDS	CDS:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000640554.1:ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.80806	4.338145	4.86823	4.35895e-4	1.65022e-4	0.00623608	0.00269147
chr14	22920903	22921003	14527885	0	-	0.51	(0.49,0.53]	chr14	1138118	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000557443.5:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	3.08487	4.338005	5.59114	6.09273e-4	5.02516e-6	0.00760626	1.7067e-4
chr7	76048050	76048105	8342207	0	+	0.672727	(0.59,1]	chr7	636209	1	UTR5	UTR5:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000461263.2:ENST00000443006.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.23348	4.3379200000000004	5.44236	0.00352837	2.02004e-4	0.0298518	0.00317801
chr6	170535219	170535319	8091000	0	-	0.53	(0.49,0.53]	chr6	618021	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	94	2	4.09125	4.337885	4.58452	9.98532e-7	8.41366e-8	4.42534e-5	4.81604e-6
chr2	63599230	63599292	1850060	0	+	0.483871	(0.455,0.49]	chr2	175423	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000436321.5:ENST00000421012.2:ENST00000432309.6:ENST00000484538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.8036	4.33773	4.87186	2.33781e-4	1.59194e-4	0.00385436	0.00263091
chr22	41650806	41650891	18381580	0	+	0.541176	(0.53,0.59]	chr22	1564705	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.92962	4.3376	5.74558	0.0012954	3.61407e-6	0.0136936	1.29307e-4
chr19	53873821	53873917	17388662	0	+	0.614583	(0.59,1]	chr19	1446781	3	CDS	CDS:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000336967.8:ENST00000421337.6:ENST00000651087.1:ENST00000391770.9:ENST00000391771.1:ENST00000439000.5:ENST00000448420.5:ENST00000391769.2:ENST00000391768.2:ENST00000414489.1	protein_coding	protein_coding	protein_coding	protein_coding	6	255	2	3.89273	4.3373099999999996	4.78189	4.83304e-7	4.61874e-8	2.14743e-5	3.18288e-6
chr12	113374792	113374863	13101594	0	+	0.577465	(0.53,0.59]	chr12	1022405	1	CDS	CDS:UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	3.8061	4.337165	4.86823	4.35895e-4	8.37944e-6	0.00623608	2.38248e-4
chr6	31693087	31693149	7661790	0	-	0.741935	(0.59,1]	chr6	585008	2	CDS	CDS:UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000498420.5:ENST00000477462.5:ENST00000482224.5:ENST00000468037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.84557	4.33702	4.82847	0.0410704	1.01132e-6	0.163285	4.03099e-5
chr4	41938601	41938696	4809323	0	+	0.452632	(0.42,0.455]	chr4	396918	1	CDS	CDS:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000510383.1:ENST00000504986.6:ENST00000506794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	4.02772	4.3369800000000005	4.64624	8.75333e-4	4.30844e-5	0.0101169	0.00100091
chr19	11105219	11105314	17230016	0	+	0.610526	(0.59,1]	chr19	1419555	1	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	4.10656	4.33648	4.5664	6.70075e-5	6.21388e-6	0.00130461	2.03021e-4
chr10	17714542	17714611	10940190	0	+	0.507246	(0.49,0.53]	chr10	833145	1	CDS	CDS:EXON_MRNA	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.68246	4.336399999999999	4.99034	3.06313e-4	1.6002e-4	0.00442973	0.00286408
chr3	127608927	127609023	3723473	0	+	0.5	(0.49,0.53]	chr3	318258	2	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.68246	4.336399999999999	4.99034	3.06313e-4	1.6002e-4	0.00442973	0.00286408
chrX	23671528	23671587	18615916	0	+	0.508475	(0.49,0.53]	chrX	1589661	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000495599.1:ENST00000379331.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	3.33324	4.33631	5.33938	0.00162947	2.08896e-9	0.0169972	2.01159e-7
chr11	35810259	35810358	11910499	0	+	0.353535	(0.33,0.36]	chr11	910190	40	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.36959	4.336225	5.30286	0.0014168	1.23392e-5	0.0145694	3.58359e-4
chr1	231366212	231366311	1548262	0	-	0.343434	(0.33,0.36]	chr1	155129	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	3.473	4.3358799999999995	5.19876	8.77304e-4	2.37278e-5	0.0101202	6.1689e-4
chr19	11447438	11447528	17231245	0	+	0.677778	(0.59,1]	chr19	1419923	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585325.5:ENST00000592445.1:ENST00000585540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	541	2	4.26322	4.335825	4.40843	5.64361e-9	1.29166e-9	5.15434e-7	1.31997e-7
chr1	53797062	53797144	1025864	0	-	0.426829	(0.42,0.455]	chr1	106382	3	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.31161	4.335789999999999	5.35997	0.00186138	2.41298e-5	0.018635	5.6648e-4
chr11	61796121	61796215	11971308	0	+	0.553191	(0.53,0.59]	chr11	917378	8	CDS	CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000574708.5:ENST00000535307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	3.8188	4.335555	4.85231	1.54941e-4	1.71119e-7	0.0028049	8.87341e-6
chr6	166943018	166943074	8083368	0	-	0.535714	(0.53,0.59]	chr6	616966	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000509073.1:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	3.8188	4.335555	4.85231	1.54941e-4	1.71119e-7	0.0028049	8.87341e-6
chr14	67692437	67692478	14683503	0	-	0.414634	(0.39,0.42]	chr14	1149650	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1:ENST00000556692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.86368	4.335515	5.80735	0.0101619	4.99312e-7	0.0627153	2.4714e-5
chr1	171684344	171684438	1368509	0	-	0.468085	(0.455,0.49]	chr1	139450	14	EXON_PSEUDO	EXON_PSEUDO	RPL4P3	ENSG00000230364.1	ENST00000428881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	118	2	4.07638	4.33514	4.5939	1.0208e-6	7.72693e-10	4.50492e-5	8.32805e-8
chr1	207757107	207757202	689833	0	+	0.4	(0.39,0.42]	chr1	70060	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	247	2	4.02422	4.3348949999999995	4.64557	1.13795e-10	4.40159e-12	1.52054e-8	9.14799e-10
chr13	20781823	20781922	13923353	0	-	0.292929	(0.29,0.33]	chr13	1092233	46	UTR3	UTR3:EXON_MRNA	XPO4	ENSG00000132953.17	ENST00000255305.10	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.86651	4.334865	4.80322	0.0112245	2.14303e-4	0.0665375	0.00359478
chrX	104192148	104192247	18794974	0	+	0.30303	(0.29,0.33]	chrX	1602486	25	UTR3	UTR3:EXON_MRNA	FAM199X	ENSG00000123575.9	ENST00000493442.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.86651	4.334865	4.80322	0.0112245	2.14303e-4	0.0665375	0.00359478
chr9	112251015	112251103	10803202	0	-	0.431818	(0.42,0.455]	chr9	818453	2	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	3.93178	4.33479	4.7378	3.1348e-6	4.0066e-9	1.15746e-4	3.51297e-7
chr21	45531863	45531958	18279230	0	-	0.684211	(0.59,1]	chr21	1550611	6	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3:ENST00000427839.5:ENST00000443742.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.41536	4.33458	5.2538	0.00164655	5.85045e-4	0.0163443	0.00793559
chr15	40471778	40471871	14881962	0	+	0.602151	(0.59,1]	chr15	1168643	6	CDS	CDS:EXON_MRNA	CHST14	ENSG00000169105.8	ENST00000306243.7:ENST00000559991.1	protein_coding	protein_coding	protein_coding	protein_coding	0	27	2	3.84557	4.33441	4.82325	0.0410704	0.002381	0.163285	0.0216895
chr5	72209368	72209466	6027891	0	+	0.306122	(0.29,0.33]	chr5	472574	43	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	3.74803	4.334255000000001	4.92048	2.45771e-7	7.83331e-8	1.20887e-5	5.03126e-6
chr1	149852894	149852965	464866	0	+	0.704225	(0.59,1]	chr1	46809	3	CDS	CDS:EXON_MRNA	H3C15	ENSG00000203852.3	ENST00000403683.1	protein_coding	protein_coding	protein_coding	protein_coding	6	257	2	3.72087	4.3341	4.94733	1.55371e-6	1.43144e-8	5.79065e-5	1.15663e-6
chr12	7142868	7142947	12717305	0	+	0.607595	(0.59,1]	chr12	987703	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000544584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.17616	4.334	5.49184	0.00434232	1.61513e-4	0.0339139	0.00265627
chr17	7247276	7247314	16429164	0	-	0.552632	(0.53,0.59]	chr17	1339365	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	CTDNEP1:RP1-4G17.5	ENSG00000175826.12:ENSG00000262302.1	ENST00000574322.6:ENST00000570828.5:ENST00000573600.5:ENST00000574205.5:ENST00000318988.10:ENST00000572043.5:ENST00000576613.5:ENST00000575783.5:ENST00000570380.5:ENST00000571409.1:ENST00000577138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.99819	4.333775	4.66936	0.0111308	0.00103174	0.0665375	0.0121443
chr2	27223562	27223655	1691545	0	+	0.569892	(0.53,0.59]	chr2	165667	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.99819	4.333775	4.66936	0.0111308	0.00103174	0.0665375	0.0121443
chr11	57688587	57688665	11952013	0	+	0.551282	(0.53,0.59]	chr11	914666	1	CDS_START	CDS_START:CDS:EXON_MRNA	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8:ENST00000532842.1:ENST00000529480.1:ENST00000529447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr11	60891165	60891263	12402700	0	-	0.571429	(0.53,0.59]	chr11	959885	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr11	111871489	111871581	12603408	0	-	0.554348	(0.53,0.59]	chr11	977177	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALG9:RP11-108O10.8	ENSG00000086848.15:ENSG00000258529.5	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000622211.4:ENST00000613181.4:ENST00000618252.1:ENST00000612489.1:ENST00000526587.2:ENST00000542429.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr17	7657572	7657671	16106194	0	+	0.565657	(0.53,0.59]	chr17	1297135	18	UTR3	UTR3:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr17	14207506	14207604	16134791	0	+	0.561224	(0.53,0.59]	chr17	1300108	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COX10	ENSG00000006695.12	ENST00000664217.1:ENST00000670279.1:ENST00000261643.8:ENST00000580561.1:ENST00000581931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr17	47823550	47823644	16573211	0	-	0.531915	(0.53,0.59]	chr17	1361399	4	UTR3	UTR3:EXON_MRNA	MRPL10	ENSG00000159111.13	ENST00000351111.7:ENST00000290208.11:ENST00000414011.1:ENST00000421763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr2	120222307	120222402	2859291	0	-	0.578947	(0.53,0.59]	chr2	255245	4	CDS	CDS:EXON_MRNA	TMEM185B	ENSG00000226479.4	ENST00000426077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr2	230875619	230875713	2422220	0	+	0.574468	(0.53,0.59]	chr2	218110	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2C	ENSG00000135916.16	ENST00000457215.5:ENST00000541852.5:ENST00000326427.11:ENST00000335005.10:ENST00000326407.10:ENST00000543957.5:ENST00000409704.6:ENST00000418408.2:ENST00000492029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr20	56518165	56518265	17835545	0	+	0.59	(0.53,0.59]	chr20	1508016	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RTF2:FAM209A	ENSG00000022277.13:ENSG00000124103.10	ENST00000023939.8:ENST00000395881.7:ENST00000357348.10:ENST00000477485.1:ENST00000477573.1:ENST00000481560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr3	14141894	14141993	3319495	0	+	0.545455	(0.53,0.59]	chr3	292109	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3:ENST00000626721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr6	30892001	30892068	7112921	0	+	0.58209	(0.53,0.59]	chr6	545173	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDR1	ENSG00000204580.14	ENST00000460944.6:ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000428153.6:ENST00000376568.8:ENST00000452441.5:ENST00000515219.5:ENST00000482873.6:ENST00000508312.5:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000376575.7:ENST00000508472.5:ENST00000507533.1:ENST00000485023.1:ENST00000417521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.00393	4.333705	4.66348	0.0108084	0.00107799	0.064368	0.0118238
chr3	48467891	48467985	4167337	0	-	0.404255	(0.39,0.42]	chr3	348993	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	3.20649	4.33367	5.46085	6.00874e-6	5.81708e-6	1.921e-4	1.80766e-4
chr12	98550151	98550251	13036887	0	+	0.3	(0.29,0.33]	chr12	1014988	24	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	3.99417	4.333555	4.67294	3.53734e-6	4.55565e-7	1.27543e-4	2.04528e-5
chr22	41528513	41528613	18381091	0	+	0.55	(0.53,0.59]	chr22	1564636	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.47419	4.3335349999999995	5.19288	8.75273e-4	9.22873e-5	0.0106963	0.0016906
chr1	210858619	210858718	1474774	0	-	0.323232	(0.29,0.33]	chr1	149069	6	UTR3	UTR3:EXON_MRNA:INTRON	KCNH1:RP11-434N15.2	ENSG00000143473.13:ENSG00000284299.1	ENST00000367007.5:ENST00000638498.1:ENST00000640710.1:ENST00000271751.10:ENST00000639952.1:ENST00000640528.1:ENST00000638960.1:ENST00000638357.1:ENST00000640243.1:ENST00000640044.1:ENST00000640566.1:ENST00000640522.1:ENST00000639602.1:ENST00000638983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	3.86293	4.333075	4.80322	2.14303e-4	5.2702e-6	0.00359478	1.61486e-4
chr16	70395078	70395175	15998032	0	-	0.57732000000000006	(0.53,0.59]	chr16	1284791	2	CDS	CDS:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	4.00393	4.33293	4.66193	0.0108084	7.20737e-7	0.064368	3.019e-5
chr11	764812	764845	11758809	0	+	0.393939	(0.39,0.42]	chr11	898444	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TALDO1	ENSG00000177156.11	ENST00000528097.5:ENST00000319006.8:ENST00000530666.1:ENST00000532202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	4.02687	4.33285	4.63883	5.68159e-4	4.35816e-5	0.0077844	0.00091744700000000005
chr1	212100806	212100898	701691	0	+	0.478261	(0.455,0.49]	chr1	71173	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.89235	4.332765	4.77318	4.7888e-4	9.60445e-5	0.00628636	0.00190731
chr1	181050010	181050102	587294	0	+	0.51087	(0.49,0.53]	chr1	60853	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MR1	ENSG00000153029.16	ENST00000614012.5:ENST00000684662.1:ENST00000434571.7:ENST00000367580.6:ENST00000683652.1:ENST00000617803.5:ENST00000282990.10:ENST00000367579.7:ENST00000438435.6:ENST00000367578.1:ENST00000684375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.23759	4.332745	4.4279	0.00436474	0.00196987	0.0335517	0.0193972
chr17	51275865	51275928	16266819	0	+	0.507937	(0.49,0.53]	chr17	1319658	1	CDS	CDS:EXON_MRNA	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.23759	4.332745	4.4279	0.00436474	0.00196987	0.0335517	0.0193972
chr17	56981155	56981230	16282083	0	+	0.506667	(0.49,0.53]	chr17	1320520	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SCPEP1	ENSG00000121064.13	ENST00000575423.5:ENST00000262288.8:ENST00000572591.5:ENST00000571345.5:ENST00000575395.5:ENST00000572710.5:ENST00000573823.5:ENST00000576154.5:ENST00000571898.5:ENST00000631024.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.23759	4.332745	4.4279	0.00436474	0.00196987	0.0335517	0.0193972
chr2	27222518	27222589	1691532	0	+	0.521127	(0.49,0.53]	chr2	165659	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.23759	4.332745	4.4279	0.00436474	0.00196987	0.0335517	0.0193972
chr2	38731821	38731909	1748684	0	+	0.511364	(0.49,0.53]	chr2	170042	2	CDS	CDS:EXON_MRNA	GALM	ENSG00000143891.17	ENST00000272252.10:ENST00000410063.5:ENST00000434934.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.23759	4.332745	4.4279	0.00436474	0.00196987	0.0335517	0.0193972
chrX	1386151	1386241	18925563	0	-	0.522222	(0.49,0.53]	chrX	1612947	1	UTR3	UTR3:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.23759	4.332745	4.4279	0.00436474	0.00196987	0.0335517	0.0193972
chr2	27206482	27206534	2569432	0	-	0.5	(0.49,0.53]	chr2	231225	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000445802.5:ENST00000412471.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr2	85351679	85351770	2770314	0	-	0.527473	(0.49,0.53]	chr2	245707	1	CDS	CDS:EXON_MRNA:INTRON	RETSAT	ENSG00000042445.14	ENST00000295802.9:ENST00000449375.1:ENST00000409984.2:ENST00000490291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr2	100392155	100392254	2810979	0	-	0.494949	(0.49,0.53]	chr2	250987	4	UTR3	UTR3:EXON_MRNA	CHST10	ENSG00000115526.11	ENST00000264249.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr5	150718329	150718383	6914812	0	-	0.518519	(0.49,0.53]	chr5	529290	2	CDS	CDS:UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2:ENST00000518909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr5	171863904	171864002	6978862	0	-	0.5	(0.49,0.53]	chr5	533363	25	UTR3	UTR3:EXON_MRNA	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr6	160056423	160056474	7528438	0	+	0.509804	(0.49,0.53]	chr6	574808	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr7	65954136	65954200	8301897	0	+	0.5	(0.49,0.53]	chr7	632918	2	CDS	CDS:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr9	88324649	88324748	10348050	0	+	0.525253	(0.49,0.53]	chr9	778863	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP49	ENSG00000226327.3	ENST00000445182.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chrX	3899284	3899353	18932780	0	-	0.521739	(0.49,0.53]	chrX	1613513	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1:ENST00000424415.2:ENST00000451781.1	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	4.28332	4.33262	4.38192	0.00338762	0.00259709	0.0288632	0.0229695
chr2	44065980	44066067	2624078	0	-	0.436782	(0.42,0.455]	chr2	236311	2	EXON_PSEUDO	EXON_PSEUDO	AC019129.1	ENSG00000219391.1	ENST00000403786.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	77	2	3.19078	4.332610000000001	5.47444	0.00310864	5.64888e-10	0.0274272	6.30855e-8
chr21	33510751	33510851	18220398	0	-	0.33	(0.29,0.33]	chr21	1546341	1	SS5_PROX	SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000487155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	4.20972	4.33253	4.45534	0.00110984	3.5038e-7	0.0127344	1.63119e-5
chr16	164481	164549	15480682	0	+	0.676471	(0.59,1]	chr16	1224162	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3:ENST00000496585.1	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	25	998	2	3.16776	4.33248	5.4972	4.14453e-7	1e-12	1.88422e-5	2.46312e-10
chr6	41935299	41935391	7701863	0	-	0.391304	(0.39,0.42]	chr6	590673	5	UTR3	UTR3:EXON_MRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.95786	4.33239	5.70692	0.00138212	2.36087e-6	0.0149186	8.27472e-5
chr5	177337192	177337250	6991098	0	-	0.534483	(0.53,0.59]	chr5	534731	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000502721.5:ENST00000513877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	126	2	2.96156	4.332355	5.70315	9.05921e-5	1.09687e-10	0.00182947	1.47014e-8
chr12	113387824	113387906	13101731	0	+	0.658537	(0.59,1]	chr12	1022442	2	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.65509	4.33227	5.00945	0.00149725	5.95213e-4	0.0159607	0.00746384
chrX	154532941	154533034	19278697	0	-	0.634409	(0.59,1]	chrX	1638548	1	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000490651.1:ENST00000439227.5:ENST00000440967.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.65509	4.33227	5.00945	0.00149725	5.95213e-4	0.0159607	0.00746384
chr14	68789725	68789819	14684728	0	-	0.648936	(0.59,1]	chr14	1149953	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZFP36L1	ENSG00000185650.10	ENST00000555997.1:ENST00000439696.3:ENST00000336440.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.06258	4.332115	5.60165	0.00616167	1.30928e-4	0.0438642	0.00243846
chr1	21824703	21824779	890619	0	-	0.592105	(0.59,1]	chr1	92214	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	226	2	3.79023	4.331815000000001	4.8734	4.36637e-6	1.7094e-8	1.52262e-4	1.23244e-6
chr17	78174280	78174376	16693269	0	-	0.635417	(0.59,1]	chr17	1375298	3	UTR3	UTR3:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.4666	4.33154	5.19648	0.00133574	7.35336e-4	0.0139317	0.00921643
chr1	21848025	21848093	890897	0	-	0.661765	(0.59,1]	chr1	92354	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.01792	4.331535000000001	5.64515	0.00111911	1.07144e-4	0.0121894	0.00206452
chr15	44711486	44711546	14899910	0	+	0.6	(0.59,1]	chr15	1171689	1	UTR5	UTR5:EXON_MRNA	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	3.01792	4.331535000000001	5.64515	0.00111911	1.07144e-4	0.0121894	0.00206452
chr22	21628679	21628761	18441864	0	-	0.731707	(0.59,1]	chr22	1572449	3	CDS	CDS:UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.24972	4.331485	5.41325	0.00314037	3.01546e-4	0.0264943	0.00472028
chr6	24705939	24706037	7638782	0	-	0.306122	(0.29,0.33]	chr6	581798	12	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	3.49035	4.33126	5.17217	4.16642e-6	6.18376e-9	1.46163e-4	5.12571e-7
chr11	118505460	118505559	12158970	0	+	0.545455	(0.53,0.59]	chr11	937104	32	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.5393	4.331155	5.12301	6.46017e-4	1.2852e-4	0.00799743	0.00241206
chr1	51973409	51973472	191819	0	+	0.52381	(0.49,0.53]	chr1	24594	1	EXON_SMALL	EXON_SMALL	RNA5SP48	ENSG00000200839.1	ENST00000363969.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	13	284	2	4.11848	4.331055	4.54363	5.88058e-10	2.77312e-12	7.2083e-8	5.59243e-10
chr2	210433504	210433602	3145327	0	-	0.306122	(0.29,0.33]	chr2	277990	24	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.24387	4.330995	4.41812	0.00263476	0.00162106	0.0239118	0.0161179
chr9	95877105	95877205	10372952	0	+	0.31	(0.29,0.33]	chr9	780897	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ERCC6L2	ENSG00000182150.19	ENST00000402838.3:ENST00000683230.1:ENST00000683937.1:ENST00000682748.1:ENST00000683991.1:ENST00000682983.1:ENST00000682394.1:ENST00000683350.1:ENST00000670016.1:ENST00000653738.2:ENST00000659728.1:ENST00000683156.1:ENST00000288985.12:ENST00000683227.1:ENST00000683176.1:ENST00000683128.1:ENST00000665077.3:ENST00000653324.1:ENST00000661047.1:ENST00000456993.6:ENST00000466840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.24387	4.330995	4.41812	0.00263476	0.00162106	0.0239118	0.0161179
chrX	53532841	53532934	19077142	0	-	0.301075	(0.29,0.33]	chrX	1622623	9	UTR3	UTR3:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.24387	4.330995	4.41812	0.00263476	0.00162106	0.0239118	0.0161179
chr5	176838567	176838667	6403890	0	+	0.61	(0.59,1]	chr5	497634	274	INTRON	INTRON	UNC5A	ENSG00000113763.12	ENST00000509580.2:ENST00000329542.9	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.42639	4.33091	6.23543	0.0409084	3.47367e-6	0.163285	1.13687e-4
chr3	49360308	49360365	4174074	0	-	0.491228	(0.49,0.53]	chr3	350896	1	CDS	CDS:UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.76703	4.33054	4.89405	2.57983e-4	1.02216e-5	0.00419998	2.82175e-4
chr17	35639677	35639760	16206643	0	+	0.433735	(0.42,0.455]	chr17	1309071	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	3.79881	4.33045	4.86209	1.65328e-4	1.22097e-7	0.0029267300000000002	6.6496e-6
chr11	125614323	125614374	12194480	0	+	0.509804	(0.49,0.53]	chr11	940788	1	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	4.10142	4.330355	4.55929	0.00116196	8.9797e-7	0.0130851	3.64922e-5
chr19	12800237	12800299	17470981	0	-	0.645161	(0.59,1]	chr19	1463180	2	CDS	CDS:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000498785.1:ENST00000478908.1:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	2.39747	4.330220000000001	6.26297	0.0430221	4.52763e-6	0.161091	1.57276e-4
chr13	39011364	39011464	13976209	0	-	0.52	(0.49,0.53]	chr13	1096557	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000468017.1:ENST00000492646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.99849	4.330105	5.66172	0.00630123	3.99372e-6	0.0445415	1.28691e-4
chr20	41112880	41112925	17790056	0	+	0.511111	(0.49,0.53]	chr20	1503497	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.99849	4.330105	5.66172	0.00630123	3.99372e-6	0.0445415	1.28691e-4
chr6	108004542	108004635	7882472	0	-	0.505376	(0.49,0.53]	chr6	603477	3	EXON_PSEUDO	EXON_PSEUDO	RPL3P7	ENSG00000225093.1	ENST00000417878.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	2.99849	4.330105	5.66172	0.00630123	3.99372e-6	0.0445415	1.28691e-4
chr15	66504790	66504855	15353039	0	-	0.630769	(0.59,1]	chr15	1212589	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5:ENST00000566491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	89	3634	2	4.018	4.329829999999999	4.64166	1.54199e-10	1e-12	2.21972e-8	2.25522e-10
chr17	81703366	81703433	16381141	0	+	0.671642	(0.59,1]	chr17	1331939	1	UTR5	UTR5:EXON_MRNA	MRPL12:RP13-1032I1.10	ENSG00000262814.8:ENSG00000262660.1	ENST00000333676.8:ENST00000571730.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	4.2353	4.32976	4.42422	0.0165254	1.17291e-5	0.0873033	3.12994e-4
chr7	139770305	139770405	9105380	0	-	0.35	(0.33,0.36]	chr7	694712	529	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.9738	4.3297	4.6856	3.92435e-4	5.94302e-5	0.00583618	0.00119141
chr1	91600245	91600321	350534	0	+	0.394737	(0.39,0.42]	chr1	34387	2	EXON_PSEUDO	EXON_PSEUDO	RP11-91I11.1	ENSG00000229067.1	ENST00000439897.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	51	2	2.18155	4.329635	6.47772	0.0283931	6.35056e-9	0.127654	5.21562e-7
chr3	141925701	141925795	3790193	0	+	0.382979	(0.36,0.39]	chr3	323508	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000487199.5:ENST00000484727.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	30	482	2	4.1531	4.329000000000001	4.5049	1e-12	1e-12	2.46312e-10	2.25522e-10
chr12	113389110	113389207	13101745	0	+	0.515464	(0.49,0.53]	chr12	1022448	6	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.22986	4.32888	4.4279	0.00196987	1.25249e-5	0.0193972	3.30689e-4
chr14	23129668	23129768	14529545	0	-	0.5	(0.49,0.53]	chr14	1138655	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4:ENST00000528806.5:ENST00000528186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	4.22986	4.32888	4.4279	0.00196987	1.25249e-5	0.0193972	3.30689e-4
chr8	22417650	22417742	9224996	0	+	0.521739	(0.49,0.53]	chr8	705699	1	CDS	CDS:EXON_MRNA	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000518348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	4.22986	4.32888	4.4279	0.00196987	1.25249e-5	0.0193972	3.30689e-4
chr1	111174878	111174963	406115	0	+	0.388235	(0.36,0.39]	chr1	39891	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	4.15467	4.328865	4.50306	1.8245e-6	5.53167e-7	7.35552e-5	2.4163e-5
chrX	47804091	47804191	18688758	0	+	0.53	(0.49,0.53]	chrX	1593631	9	EXON_PSEUDO	EXON_PSEUDO	WASF4P	ENSG00000188459.4	ENST00000444248.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	4.28332	4.328775	4.37423	0.00338762	4.77238e-6	0.0288632	1.49327e-4
chr19	11105314	11105409	17230017	0	+	0.684211	(0.59,1]	chr19	1419555	2	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	4	168	2	3.58773	4.32873	5.06973	1.26301e-5	2.77752e-7	3.33238e-4	1.50065e-5
chr14	94100638	94100738	14468033	0	+	0.39	(0.36,0.39]	chr14	1129887	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000557600.5:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5:ENST00000554562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	3.66978	4.328605	4.98743	3.25031e-4	8.82225e-5	0.00463603	0.00178337
chr2	32193888	32193983	1711658	0	+	0.378947	(0.36,0.39]	chr2	167888	1	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.66978	4.328605	4.98743	3.25031e-4	8.82225e-5	0.00463603	0.00178337
chr2	61478724	61478819	2690344	0	-	0.368421	(0.36,0.39]	chr2	240316	12	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.66978	4.328605	4.98743	3.25031e-4	8.82225e-5	0.00463603	0.00178337
chr8	56963096	56963195	9836822	0	-	0.30303	(0.29,0.33]	chr8	744432	53	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	3.51776	4.32855	5.13934	9.94392e-5	8.37337e-9	0.00195926	6.64842e-7
chr4	75644334	75644434	5472856	0	-	0.27	[0,0.29]	chr4	438361	26	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	4.30792	4.328275	4.34863	1.54494e-7	1.66528e-9	8.14079e-6	1.78101e-7
chr3	13325862	13325931	4046288	0	-	0.637681	(0.59,1]	chr3	339546	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.11647	4.32808	5.53969	0.00535979	1.29608e-4	0.0406564	0.00223885
chr7	150945364	150945464	9128604	0	-	0.71	(0.59,1]	chr7	697443	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.11647	4.32808	5.53969	0.00535979	1.29608e-4	0.0406564	0.00223885
chr1	212361065	212361163	702765	0	+	0.336735	(0.33,0.36]	chr1	71311	4	UTR3	UTR3:EXON_MRNA	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.3227	4.32807	5.33344	0.00222616	1.82386e-5	0.0211992	4.52248e-4
chr15	55350840	55350912	14944159	0	+	0.333333	(0.33,0.36]	chr15	1174642	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PIGB	ENSG00000069943.10	ENST00000565367.5:ENST00000164305.10:ENST00000539642.5:ENST00000565502.5:ENST00000563742.1:ENST00000569823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.3227	4.32807	5.33344	0.00222616	1.82386e-5	0.0211992	4.52248e-4
chr1	109415285	109415363	1220515	0	-	0.512821	(0.49,0.53]	chr1	119101	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1:ENST00000491287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	4.03034	4.32804	4.62574	4.26396e-5	7.86745e-7	9.97006e-4	3.25904e-5
chr11	65130088	65130175	12421661	0	-	0.62069	(0.59,1]	chr11	963742	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	SYVN1:MIR6751	ENSG00000162298.19:ENSG00000284489.1	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000527765.1:ENST00000610479.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	1	53	2	3.4902	4.32798	5.16576	0.00130379	6.55716e-4	0.0142445	0.0080931
chr22	36265639	36265737	18360626	0	+	0.55102	(0.53,0.59]	chr22	1561192	6	CDS	CDS:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000397278.8:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.99191	4.327695	4.66348	0.00107799	5.86351e-5	0.0118238	0.00129243
chr8	58581926	58582019	9351273	0	+	0.344086	(0.33,0.36]	chr8	715167	3	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.97606	4.327665	5.67927	0.00871774	1.93383e-6	0.0558165	6.97773e-5
chr1	56619408	56619478	1037708	0	-	0.585714	(0.53,0.59]	chr1	107696	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	PLPP3:RP11-377K22.2	ENSG00000162407.9:ENSG00000225475.1	ENST00000461655.1:ENST00000476206.1:ENST00000442812.1	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	1	39	2	3.02054	4.32764	5.63474	0.00577011	7.53339e-6	0.0426551	2.17987e-4
chr1	207652640	207652735	688900	0	+	0.442105	(0.42,0.455]	chr1	69942	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	CR1L:CD46P1	ENSG00000197721.17:ENSG00000244703.3	ENST00000531844.5:ENST00000508064.7:ENST00000441364.1	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:unprocessed_pseudogene	1	37	2	4.25202	4.327389999999999	4.40276	0.0017618	1.07036e-5	0.0180053	2.92107e-4
chr2	113923268	113923367	2006767	0	+	0.333333	(0.33,0.36]	chr2	190753	59	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	3.56818	4.327365	5.08655	4.6453e-5	3.90735e-5	0.00106753	8.43777e-4
chr11	90283128	90283223	12059330	0	+	0.515789	(0.49,0.53]	chr11	929980	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	10	219	2	4.2832	4.32724	4.37128	1.89442e-9	5.21789e-11	1.99041e-7	7.62324e-9
chr13	71675066	71675146	13778205	0	+	0.55	(0.53,0.59]	chr13	1084198	1	EXON_PSEUDO	EXON_PSEUDO	H3P36	ENSG00000236534.1	ENST00000440551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	37	2	3.38347	4.327170000000001	5.27087	0.00132446	5.9416e-5	0.0138834	0.00130151
chr17	42778969	42779069	16229785	0	+	0.59	(0.53,0.59]	chr17	1313396	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000590339.5:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.61133	4.327155	5.04298	4.55298e-4	1.91383e-4	0.00608573	0.0032874
chr20	34290868	34290938	17946770	0	-	0.542857	(0.53,0.59]	chr20	1519971	3	CDS	CDS:EXON_MRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.61133	4.327155	5.04298	4.55298e-4	1.91383e-4	0.00608573	0.0032874
chr1	182790570	182790658	594249	0	+	0.284091	[0,0.29]	chr1	61428	4	INTRON	INTRON	NPL	ENSG00000135838.14	ENST00000488424.5:ENST00000367554.7:ENST00000460690.5:ENST00000463899.5:ENST00000367555.5:ENST00000367553.6:ENST00000479721.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.29246	4.327145	4.36183	0.00254021	0.00170062	0.0227257	0.01759
chr12	98535534	98535634	13036733	0	+	0.29	[0,0.29]	chr12	1014956	13	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.29246	4.327145	4.36183	0.00254021	0.00170062	0.0227257	0.01759
chr15	78498240	78498337	15040133	0	+	0.28866000000000003	[0,0.29]	chr15	1183144	2	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.29246	4.327145	4.36183	0.00254021	0.00170062	0.0227257	0.01759
chr2	174185983	174186083	3021426	0	-	0.28	[0,0.29]	chr2	267451	436	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.29246	4.327145	4.36183	0.00254021	0.00170062	0.0227257	0.01759
chr21	25770210	25770308	18081534	0	+	0.285714	[0,0.29]	chr21	1533125	11	UTR3	UTR3:EXON_MRNA	GABPA	ENSG00000154727.11	ENST00000354828.7:ENST00000400075.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.29246	4.327145	4.36183	0.00254021	0.00170062	0.0227257	0.01759
chr11	57407511	57407604	12394427	0	-	0.430108	(0.42,0.455]	chr11	958628	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000528835.1:ENST00000395124.6:ENST00000395123.6:ENST00000625097.1:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	0	18	2	4.25028	4.32652	4.40276	0.00406761	0.0017618	0.032143	0.0180053
chr13	33830718	33830786	13682575	0	+	0.426471	(0.42,0.455]	chr13	1078377	1	CDS	CDS:EXON_MRNA	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.25028	4.32652	4.40276	0.00406761	0.0017618	0.032143	0.0180053
chr17	18065440	18065539	16148810	0	+	0.454545	(0.42,0.455]	chr17	1301507	3	UTR3	UTR3:EXON_MRNA	GID4	ENSG00000141034.10	ENST00000268719.9	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.25028	4.32652	4.40276	0.00406761	0.0017618	0.032143	0.0180053
chr7	103503015	103503086	8963277	0	-	0.43662	(0.42,0.455]	chr7	686113	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.25028	4.32652	4.40276	0.00406761	0.0017618	0.032143	0.0180053
chr10	73767921	73768007	11115838	0	+	0.511628	(0.49,0.53]	chr10	845902	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000496827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	3.33099	4.32639	5.32179	1.59567e-4	2.63311e-5	0.00263091	6.73425e-4
chr6	43512501	43512563	7707992	0	-	0.66129	(0.59,1]	chr6	591418	2	CDS	CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6:ENST00000512713.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.19	4.32635	5.4627	0.0039188	2.43542e-4	0.0314356	0.00399705
chrX	121203759	121203856	19198096	0	-	0.412371	(0.39,0.42]	chrX	1632450	7	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	3.11549	4.32631	5.53713	0.00403491	3.48373e-6	0.032143	1.26023e-4
chr1	203861598	203861659	670665	0	+	0.52459	(0.49,0.53]	chr1	67654	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	103	2	4.20376	4.326124999999999	4.44849	1.43152e-5	3.40159e-9	4.04062e-4	3.05786e-7
chr6	151099428	151099528	7489279	0	+	0.5	(0.49,0.53]	chr6	572334	65	INTRON	INTRON	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	4.14824	4.326085000000001	4.50393	2.04708e-5	3.34456e-8	5.45523e-4	2.18513e-6
chr19	54178760	54178860	17627707	0	-	0.6	(0.59,1]	chr19	1488024	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5:ENST00000391754.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	140	2	4.06326	4.325895	4.58853	5.46127e-6	4.19122e-6	1.8199e-4	1.3377e-4
chr8	41611902	41611992	9304080	0	+	0.466667	(0.455,0.49]	chr8	712134	1	CDS	CDS:UTR3:EXON_MRNA	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000521806.5:ENST00000519921.5:ENST00000523906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.85172	4.325865	5.80001	0.010864	1.35407e-6	0.0643837	5.16241e-5
chr21	8218287	8218386	18041201	0	+	0.464646	(0.455,0.49]	chr21	1530814	57	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	395	7194	2	4.17637	4.32573	4.47509	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	35601697	35601795	938320	0	-	0.408163	(0.39,0.42]	chr1	98692	23	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.88836	4.3254	5.76244	0.0102432	1.61725e-6	0.062872	5.98677e-5
chr2	74882119	74882179	1893333	0	+	0.55	(0.53,0.59]	chr2	179612	1	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.69224	4.325245	4.95825	2.87508e-4	1.78865e-5	0.00457439	4.45448e-4
chr1	21823415	21823488	890598	0	-	0.643836	(0.59,1]	chr1	92198	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000481644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	2.66274	4.32481	5.98688	0.00482151	2.00143e-5	0.0365653	5.35199e-4
chrX	47206247	47206345	18686826	0	+	0.591837	(0.59,1]	chrX	1593235	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	3.51277	4.3247800000000005	5.13679	9.28022e-4	1.00384e-4	0.0111748	0.00180872
chr11	34456106	34456202	11906181	0	+	0.427083	(0.42,0.455]	chr11	909799	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	4.09661	4.324745	4.55288	2.79795e-5	2.12083e-8	7.07527e-4	1.48013e-6
chr6	32171003	32171070	7664675	0	-	0.552239	(0.53,0.59]	chr6	586112	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000476663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.90978	4.324675	5.73957	0.00857883	3.90343e-6	0.0552386	1.26306e-4
chr2	60938363	60938443	2686407	0	-	0.45	(0.42,0.455]	chr2	239769	3	EXON_PSEUDO	EXON_PSEUDO	RPS12P3	ENSG00000232713.2	ENST00000451515.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	85	2	3.91147	4.324595	4.73772	3.72195e-7	2.72689e-7	1.71717e-5	1.4763e-5
chr16	74492956	74493048	16031424	0	-	0.521739	(0.49,0.53]	chr16	1287357	1	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.7546	4.324325	4.89405	2.57983e-4	2.09468e-4	0.00419998	0.00327655
chr6	26033371	26033468	7646935	0	-	0.670103	(0.59,1]	chr6	582493	2	CDS	CDS:EXON_MRNA	H2AC4	ENSG00000278463.2	ENST00000615868.2	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	3.59421	4.32406	5.05391	6.47795e-5	3.07875e-7	0.00126536	1.64383e-5
chr16	75640266	75640349	16039212	0	-	0.445783	(0.42,0.455]	chr16	1288340	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5:ENST00000568682.5:ENST00000570215.1:ENST00000565738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	96	2	3.93178	4.32386	4.71594	3.1348e-6	4.89851e-9	1.15746e-4	4.16525e-7
chr16	28112974	28113050	15903650	0	-	0.592105	(0.59,1]	chr16	1273263	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	26	2	3.98751	4.323595	4.65968	0.0301044	0.00413632	0.129773	0.0324998
chr19	4847790	4847890	17434101	0	-	0.64	(0.59,1]	chr19	1455560	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000589163.5:ENST00000585479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.98751	4.323595	4.65968	0.0301044	0.00413632	0.129773	0.0324998
chr7	107940173	107940265	8987383	0	-	0.597826	(0.59,1]	chr7	687609	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000678310.1:ENST00000468999.2:ENST00000474380.2:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.98751	4.323595	4.65968	0.0301044	0.00413632	0.129773	0.0324998
chr9	137279081	137279178	10515661	0	+	0.608247	(0.59,1]	chr9	797347	4	CDS	CDS:EXON_MRNA	TOR4A	ENSG00000198113.3	ENST00000357503.3	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.98751	4.323595	4.65968	0.0301044	0.00413632	0.129773	0.0324998
chr7	30633860	30633946	8203910	0	+	0.302326	(0.29,0.33]	chr7	625869	1	UTR3	UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	249	2	3.86317	4.32339	4.78361	1.27148e-9	1e-12	1.40745e-7	2.25522e-10
chr16	85801205	85801278	15798314	0	+	0.493151	(0.49,0.53]	chr16	1257138	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	2.72712	4.323235	5.91935	9.78408e-4	5.27035e-7	0.0109424	2.57927e-5
chr2	203191145	203191240	2321862	0	+	0.505263	(0.49,0.53]	chr2	210348	9	EXON_MRNA	EXON_MRNA:EXON_PSEUDO:INTRON	NBEAL1:RPL12P16	ENSG00000144426.19:ENSG00000204196.5	ENST00000683969.1:ENST00000449802.5:ENST00000681967.1:ENST00000683338.1:ENST00000683001.1:ENST00000682108.1:ENST00000414576.6:ENST00000460355.1:ENST00000683650.1:ENST00000431098.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:transcribed_processed_pseudogene	4	63	2	3.25244	4.323214999999999	5.39399	1.71804e-5	1.25784e-5	4.72485e-4	3.31924e-4
chr11	130126699	130126764	12206947	0	+	0.430769	(0.42,0.455]	chr11	942034	1	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	3.23839	4.323115	5.40784	2.92986e-4	1.05542e-9	0.00464297	1.10014e-7
chr17	30059051	30059147	16494923	0	-	0.4375	(0.42,0.455]	chr17	1349195	1	EXON_SMALL	EXON_SMALL:EXON_PSEUDO	RNY4P13	ENSG00000207011.1:ENSG00000267482.1	ENST00000384284.1:ENST00000590718.1	misc_RNA	misc_RNA	misc_RNA:unprocessed_pseudogene	misc_RNA:unprocessed_pseudogene	1	33	2	3.84538	4.32301	4.80064	3.0479e-4	1.2691e-4	0.00472028	0.00219756
chr3	33821954	33822018	3399426	0	+	0.4375	(0.42,0.455]	chr3	295664	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5:ENST00000494810.1:ENST00000459659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.84538	4.32301	4.80064	3.0479e-4	1.2691e-4	0.00472028	0.00219756
chr12	103942526	103942534	13056867	0	+	0.375	(0.36,0.39]	chr12	1017343	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.84089	4.322915	5.80494	0.0128123	9.78955e-7	0.0719798	3.91899e-5
chr18	57606683	57606751	17137521	0	-	0.529412	(0.49,0.53]	chr18	1407157	2	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000589001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.23006	4.32283	5.4156	0.00253719	1.84143e-5	0.0233955	4.53637e-4
chr9	128987652	128987717	10482638	0	+	0.507692	(0.49,0.53]	chr9	791093	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	3.23006	4.32283	5.4156	0.00253719	1.84143e-5	0.0233955	4.53637e-4
chr16	88643352	88643452	16073931	0	-	0.73	(0.59,1]	chr16	1291429	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CYBA	ENSG00000051523.11	ENST00000261623.8	protein_coding	protein_coding	protein_coding	protein_coding	13	543	2	4.31585	4.322775	4.3297	4.36713e-9	1.52876e-9	4.11446e-7	1.5342e-7
chr10	71828876	71828943	11563347	0	-	0.641791	(0.59,1]	chr10	880009	1	CDS	CDS:EXON_MRNA:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	14	611	2	3.99625	4.322744999999999	4.64924	5.16765e-8	5.56344e-11	3.49015e-6	8.06726e-9
chr11	130129126	130129206	12206975	0	+	0.6125	(0.59,1]	chr11	942046	2	CDS	CDS:UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	216	2	3.67246	4.322265	4.97207	8.18996e-7	5.21616e-7	3.37188e-5	2.56719e-5
chr3	4983308	4983402	3277643	0	+	0.553191	(0.53,0.59]	chr3	288720	6	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	3.17316	4.322185	5.47121	7.8686e-5	9.37257e-10	0.00164157	9.91786e-8
chr13	113322321	113322421	13908407	0	+	0.63	(0.59,1]	chr13	1090360	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1:ENST00000471046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	115	2	3.66704	4.32213	4.97722	6.16458e-4	3.8584e-7	0.00822794	1.76611e-5
chrX	110346702	110346802	19170642	0	-	0.44	(0.42,0.455]	chrX	1630553	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	AMMECR1:GNG5P2	ENSG00000101935.11:ENSG00000133136.5	ENST00000372057.1:ENST00000680410.1:ENST00000372054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.62856	4.32209	5.01562	4.02604e-4	1.01971e-4	0.00549837	0.0019861
chr2	65010623	65010723	1853254	0	+	0.45	(0.42,0.455]	chr2	175826	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.91373	4.322045	5.73036	0.00892357	2.37045e-6	0.0567495	8.28831e-5
chr12	120131925	120132022	13579031	0	-	0.556701	(0.53,0.59]	chr12	1068539	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.69065	4.32149	4.95233	3.04331e-4	3.02711e-4	0.00472028	0.00439897
chr14	18999862	18999962	14165525	0	+	0.58	(0.53,0.59]	chr14	1108472	13	UTR3	UTR3:EXON_MRNA	POTEM	ENSG00000222036.8	ENST00000547889.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.30943	4.32147	5.33351	0.0018255	4.35359e-5	0.0183913	0.00091744700000000005
chrX	30219250	30219345	18640664	0	+	0.494737	(0.49,0.53]	chrX	1590509	7	CDS	CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.72252	4.32126	5.92	0.0161474	6.89283e-7	0.0860154	2.91313e-5
chr1	167705896	167705996	523870	0	+	0.36	(0.33,0.36]	chr1	56237	13	UTR3	UTR3:EXON_MRNA	RCSD1	ENSG00000198771.11	ENST00000537350.5:ENST00000367854.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.1284	4.32109	4.51378	0.00407303	0.00118147	0.0324137	0.0127276
chr10	119073841	119073937	11717597	0	-	0.354167	(0.33,0.36]	chr10	893864	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.1284	4.32109	4.51378	0.00407303	0.00118147	0.0324137	0.0127276
chr11	119023582	119023674	12161717	0	+	0.336957	(0.33,0.36]	chr11	937598	3	UTR3	UTR3:EXON_MRNA:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000533012.1:ENST00000533149.1:ENST00000524797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.1284	4.32109	4.51378	0.00407303	0.00118147	0.0324137	0.0127276
chr5	127530344	127530396	6204807	0	+	0.480769	(0.455,0.49]	chr5	483433	2	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	4.27906	4.321065	4.36307	0.00218641	8.82347e-6	0.0208941	2.48294e-4
chr5	72198495	72198593	6027780	0	+	0.5	(0.49,0.53]	chr5	472560	48	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	3.11329	4.32083	5.52837	3.3061e-5	7.50805e-6	7.31089e-4	2.3779e-4
chr1	52994638	52994735	197343	0	+	0.340206	(0.33,0.36]	chr1	25156	15	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	SCP2:TUBBP10	ENSG00000116171.19:ENSG00000226147.1	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000427668.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	28	2	3.15976	4.32081	5.48186	0.00437542	7.22374e-6	0.0340502	2.11873e-4
chr3	100323865	100323964	3634791	0	+	0.333333	(0.33,0.36]	chr3	311583	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000471273.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.15976	4.32081	5.48186	0.00437542	7.22374e-6	0.0340502	2.11873e-4
chr1	114718071	114718168	1239596	0	-	0.474227	(0.455,0.49]	chr1	121344	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000483407.1:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	149	2	4.31122	4.320485	4.32975	1.27857e-7	3.09603e-10	7.7505e-6	3.71441e-8
chr1	22086438	22086493	93023	0	+	0.418182	(0.39,0.42]	chr1	10786	1	CDS	CDS:UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000651171.1:ENST00000652582.1:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.85207	4.320425	4.78878	4.27222e-4	1.28587e-4	0.00577513	0.00241206
chr17	75168239	75168338	16682497	0	-	0.383838	(0.36,0.39]	chr17	1372978	28	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	119	2	3.94341	4.320365000000001	4.69732	1.02635e-8	4.58687e-9	7.92728e-7	4.29436e-7
chr19	4347697	4347779	17431304	0	-	0.463415	(0.455,0.49]	chr19	1454979	4	SS3_PROX	SS3_PROX:INTRON	AC007292.4	ENSG00000269807.1	ENST00000594776.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	4.00069	4.320235	4.63978	6.94032e-4	5.13615e-5	0.00876781	0.00104999
chr8	22082333	22082430	9222734	0	+	0.474227	(0.455,0.49]	chr8	705228	10	UTR3	UTR3:EXON_MRNA	DMTN	ENSG00000158856.18	ENST00000381470.7:ENST00000432128.5:ENST00000443491.6:ENST00000523782.6:ENST00000265800.9:ENST00000517305.4:ENST00000358242.5:ENST00000523266.5:ENST00000519907.5:ENST00000415253.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.00069	4.320235	4.63978	6.94032e-4	5.13615e-5	0.00876781	0.00104999
chr4	3520132	3520193	5285724	0	-	0.557377	(0.53,0.59]	chr4	425824	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.86809	4.320155	4.77222	6.67251e-4	1.18973e-4	0.00867533	0.00207755
chr7	1439481	1439579	8645280	0	-	0.489796	(0.455,0.49]	chr7	660635	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000487156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	3.66739	4.319985	4.97258	1.84876e-4	2.02214e-5	0.00296795	5.39633e-4
chr12	124800123	124800199	13600373	0	-	0.631579	(0.59,1]	chr12	1071705	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.6986	4.31995	4.9413	0.00191468	4.89626e-4	0.0190905	0.00639399
chr1	207325621	207325721	686306	0	+	0.43	(0.42,0.455]	chr1	69484	1	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	105	2	3.62635	4.319895	5.01344	2.72662e-5	2.90913e-10	6.94447e-4	3.51313e-8
chr4	99949329	99949386	5551593	0	-	0.508772	(0.49,0.53]	chr4	443722	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	3.8233	4.319615	4.81593	1.44192e-4	1.6567e-7	0.00242438	9.74137e-6
chr15	96282910	96282989	15454020	0	-	0.594937	(0.59,1]	chr15	1222267	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	NR2F2-AS1	ENSG00000247809.9	ENST00000560800.5:ENST00000561402.5:ENST00000502125.6:ENST00000561344.5:ENST00000558929.5:ENST00000557863.5	lncRNA	lncRNA	lncRNA	lncRNA	28	1232	2	3.79195	4.31952	4.84709	1.38531e-8	1e-12	1.1237e-6	2.25522e-10
chr22	19724108	19724193	18295920	0	+	0.8	(0.59,1]	chr22	1552888	4	CDS	CDS:UTR3:EXON_MRNA	SEPT5-GP1BB:SEPTIN5:GP1BB	ENSG00000284874.1:ENSG00000184702.20:ENSG00000203618.6	ENST00000455843.5:ENST00000431044.5:ENST00000470814.1:ENST00000366425.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	209	2	2.6892	4.319295	5.94939	0.00147019	5.72634e-10	0.0149767	7.02748e-8
chr20	32158450	32158514	17752559	0	+	0.53125	(0.53,0.59]	chr20	1498522	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.67993	4.31909	4.95825	3.22778e-4	2.87508e-4	0.0046122	0.00457439
chrX	55014925	55015015	19084614	0	-	0.577778	(0.53,0.59]	chrX	1623743	3	CDS	CDS:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	5	118	2	3.80481	4.318944999999999	4.83308	1.96889e-7	1.94849e-7	1.11133e-5	1.00279e-5
chr20	3582207	3582280	17657565	0	+	0.438356	(0.42,0.455]	chr20	1492763	2	CDS	CDS:EXON_MRNA	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	4.24133	4.31887	4.39641	0.00326918	4.03242e-6	0.0282494	1.29746e-4
chr13	26693746	26693846	13937225	0	-	0.44	(0.42,0.455]	chr13	1093808	57	INTRON	INTRON	RP11-496O3.3	ENSG00000285935.1	ENST00000650558.1	lncRNA	lncRNA	lncRNA	lncRNA	0	18	2	4.0898	4.318860000000001	4.54792	0.00698074	9.66045e-4	0.0473262	0.0115185
chr18	2929458	2929558	16984901	0	-	0.45	(0.42,0.455]	chr18	1396514	3	SS3_PROX	SS3_PROX:INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.0898	4.318860000000001	4.54792	0.00698074	9.66045e-4	0.0473262	0.0115185
chr11	34471970	34472060	11906351	0	+	0.255556	[0,0.29]	chr11	909837	7	UTR3	UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.87835	4.31878	4.75921	2.77035e-4	1.0775e-4	0.00444204	0.00192514
chr2	27204860	27204931	2569410	0	-	0.591549	(0.59,1]	chr2	231212	2	CDS	CDS:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.66704	4.318595	4.97015	0.00140057	6.16458e-4	0.0144327	0.00822794
chr2	26193674	26193772	2565665	0	-	0.55102	(0.53,0.59]	chr2	230539	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	4.18373	4.318535	4.45334	1.85867e-5	3.13332e-6	4.56627e-4	1.15746e-4
chr6	27810484	27810574	7105138	0	+	0.466667	(0.455,0.49]	chr6	543458	1	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	3.85088	4.3185	4.78612	5.77607e-7	2.17075e-7	2.77476e-5	1.0861e-5
chr2	222921279	222921354	2406126	0	+	0.426667	(0.42,0.455]	chr2	216586	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000540115.1:ENST00000421680.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	4.05954	4.318435	4.57733	0.00617886	1.70896e-8	0.0439741	1.23244e-6
chr8	63017531	63017630	9851933	0	-	0.434343	(0.42,0.455]	chr8	745323	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GGH	ENSG00000137563.13	ENST00000677482.1:ENST00000677459.1:ENST00000678069.1:ENST00000523788.2:ENST00000518466.6:ENST00000260118.7:ENST00000677919.1:ENST00000677327.1:ENST00000679326.1:ENST00000522852.1:ENST00000520609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	4.05954	4.318435	4.57733	0.00617886	1.70896e-8	0.0439741	1.23244e-6
chr1	45015006	45015088	174354	0	+	0.5	(0.49,0.53]	chr1	22555	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.07719	4.318239999999999	4.55929	0.0074411	0.00116196	0.0492519	0.0130851
chr11	47166267	47166326	12385340	0	-	0.508475	(0.49,0.53]	chr11	956428	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.07719	4.318239999999999	4.55929	0.0074411	0.00116196	0.0492519	0.0130851
chr3	128764833	128764925	4441954	0	-	0.456522	(0.455,0.49]	chr3	369079	5	EXON_PSEUDO	EXON_PSEUDO	FTH1P4	ENSG00000242992.3	ENST00000480365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	41	2	2.50904	4.318145	6.12725	0.0310515	1.23635e-7	0.131262	6.7072e-6
chr11	82849048	82849133	12499344	0	-	0.470588	(0.455,0.49]	chr11	971446	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	3.56037	4.31802	5.07567	5.72551e-4	1.97355e-8	0.0078026	1.39098e-6
chr1	15567183	15567269	69106	0	+	0.44186	(0.42,0.455]	chr1	7728	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1:ENST00000490811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.24133	4.318004999999999	4.39468	0.00326918	0.00240483	0.0282494	0.0217482
chr10	3073807	3073907	10903229	0	+	0.45	(0.42,0.455]	chr10	829671	31	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000677351.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.24133	4.318004999999999	4.39468	0.00326918	0.00240483	0.0282494	0.0217482
chr18	31071683	31071762	17058389	0	-	0.43038	(0.42,0.455]	chr18	1401803	2	CDS	CDS:EXON_MRNA	DSC2	ENSG00000134755.18	ENST00000251081.8:ENST00000280904.11:ENST00000648081.1:ENST00000682357.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.24133	4.318004999999999	4.39468	0.00326918	0.00240483	0.0282494	0.0217482
chr3	100377773	100377842	4325638	0	-	0.42029	(0.42,0.455]	chr3	360590	2	CDS	CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6:ENST00000492171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.24133	4.318004999999999	4.39468	0.00326918	0.00240483	0.0282494	0.0217482
chr6	14133955	14134055	7063272	0	+	0.44	(0.42,0.455]	chr6	540659	2	SS5_PROX	SS5_PROX:INTRON	CD83	ENSG00000112149.10	ENST00000612003.4:ENST00000379153.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.24133	4.318004999999999	4.39468	0.00326918	0.00240483	0.0282494	0.0217482
chr6	158636649	158636737	8043782	0	-	0.420455	(0.42,0.455]	chr6	614881	3	UTR3	UTR3:EXON_MRNA	DYNLT1	ENSG00000146425.11	ENST00000367089.8:ENST00000367088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.24133	4.318004999999999	4.39468	0.00326918	0.00240483	0.0282494	0.0217482
chr18	57550711	57550811	17137069	0	-	0.54	(0.53,0.59]	chr18	1407063	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	3.2308500000000002	4.3179099999999995	5.40497	2.81517e-4	2.83308e-5	0.00415519	7.12614e-4
chr19	14119795	14119889	17478630	0	-	0.510638	(0.49,0.53]	chr19	1464243	4	UTR3	UTR3:EXON_MRNA	ASF1B	ENSG00000105011.9	ENST00000263382.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.12263	4.317875	4.51312	0.00591451	0.00156636	0.0427941	0.0156889
chr20	62278175	62278275	17861077	0	+	0.52	(0.49,0.53]	chr20	1509920	44	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.12263	4.317875	4.51312	0.00591451	0.00156636	0.0427941	0.0156889
chr4	107644801	107644890	5583584	0	-	0.52809	(0.49,0.53]	chr4	445623	1	CDS	CDS:EXON_MRNA	PAPSS1	ENSG00000138801.9	ENST00000265174.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.12263	4.317875	4.51312	0.00591451	0.00156636	0.0427941	0.0156889
chr8	97066142	97066210	9504726	0	+	0.514706	(0.49,0.53]	chr8	722636	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000522617.3:ENST00000529551.1:ENST00000532528.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.12263	4.317875	4.51312	0.00591451	0.00156636	0.0427941	0.0156889
chr12	74541077	74541176	12961070	0	+	0.444444	(0.42,0.455]	chr12	1010219	28	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	12	221	2	4.01308	4.317865	4.62265	1.87461e-10	6.98488e-11	2.63319e-8	9.89804e-9
chr2	101006381	101006479	1957033	0	+	0.295918	(0.29,0.33]	chr2	185909	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL31	ENSG00000071082.11	ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	102	2	3.23505	4.31753	5.40001	1.0759e-4	2.81353e-12	0.00207122	5.67065e-10
chr1	226071414	226071479	738417	0	+	0.461538	(0.455,0.49]	chr1	74475	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	3.79735	4.317275	4.8372	9.19204e-7	1.24477e-7	3.72813e-5	7.5922e-6
chr6	26031889	26031960	7646929	0	-	0.647887	(0.59,1]	chr6	582488	3	CDS	CDS:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	15	633	2	4.24627	4.31717	4.38807	5.35975e-9	4.96176e-10	4.52546e-7	6.20214e-8
chr17	58089875	58089974	16287299	0	+	0.444444	(0.42,0.455]	chr17	1320910	7	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	7	143	2	4.16566	4.31665	4.46764	6.37132e-9	2.0686e-9	5.23021e-7	2.14963e-7
chr1	225410290	225410353	1528144	0	-	0.412698	(0.39,0.42]	chr1	152798	1	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	109	2	4.08157	4.31659	4.55161	1.0443e-6	1.11685e-9	4.57959e-5	1.15291e-7
chr1	40066267	40066320	151913	0	+	0.528302	(0.49,0.53]	chr1	19013	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.02891	4.316465	5.60402	8.23332e-4	5.78803e-6	0.0102121	1.75119e-4
chr22	32039489	32039570	18352414	0	+	0.555556	(0.53,0.59]	chr22	1560185	1	EXON_PSEUDO	EXON_PSEUDO	SC22CB-1E7.1	ENSG00000232346.1	ENST00000423610.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	144	2	3.2425	4.316365	5.39023	2.6381e-4	1.17006e-11	0.00427022	1.99273e-9
chr19	53224425	53224516	17625391	0	-	0.494505	(0.49,0.53]	chr19	1487487	6	EXON_PSEUDO	EXON_PSEUDO	NDUFV2P1	ENSG00000267809.1	ENST00000596415.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	44	2	3.38647	4.31613	5.24579	1.15525e-4	4.073e-5	0.00204405	9.64741e-4
chr6	34589769	34589868	7674098	0	-	0.525253	(0.49,0.53]	chr6	588118	26	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.38647	4.31613	5.24579	1.15525e-4	4.073e-5	0.00204405	9.64741e-4
chr16	21972022	21972122	15586915	0	+	0.58	(0.53,0.59]	chr16	1235464	2	CDS	CDS:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	86	2	4.102	4.316115	4.53023	1.83321e-6	1.01285e-6	7.37353e-5	4.03248e-5
chr2	26244524	26244596	2566197	0	-	0.638889	(0.59,1]	chr2	230646	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	3.27003	4.31603	5.36203	3.74697e-4	3.45884e-4	0.00560631	0.00486309
chr1	19219632	19219669	877136	0	-	0.378378	(0.36,0.39]	chr1	90429	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000461353.1:ENST00000486405.1:ENST00000486238.1:ENST00000494770.6:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.89837	4.315915	4.73346	3.2963e-4	9.25116e-5	0.00504024	0.00169222
chr16	33980739	33980791	15640343	0	+	0.461538	(0.455,0.49]	chr16	1242731	1	EXON_PSEUDO	EXON_PSEUDO	RP11-598D12.4	ENSG00000198555.7	ENST00000568600.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	32	2	3.30384	4.315715	5.32759	0.00184955	1.92345e-5	0.0178046	5.18397e-4
chr3	41236642	41236742	3432593	0	+	0.46	(0.455,0.49]	chr3	298563	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000465552.2:ENST00000482042.1:ENST00000471014.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.30384	4.315715	5.32759	0.00184955	1.92345e-5	0.0178046	5.18397e-4
chr1	198741868	198741947	648342	0	+	0.506329	(0.49,0.53]	chr1	65178	1	CDS	CDS:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000442510.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.9516	4.315659999999999	4.67972	6.94757e-4	6.96459e-5	0.00876781	0.0013446
chr2	33363389	33363453	1722482	0	+	0.375	(0.36,0.39]	chr2	168810	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000422669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.0322	4.31545	4.5987	0.00588589	9.0208e-4	0.0427941	0.0102618
chr5	44816740	44816840	5961598	0	+	0.39	(0.36,0.39]	chr5	467226	4	EXON_LNCRNA	EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000230914.4	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	4.0322	4.31545	4.5987	0.00588589	9.0208e-4	0.0427941	0.0102618
chr8	33013383	33013482	9271694	0	+	0.373737	(0.36,0.39]	chr8	709692	167	INTRON	INTRON	RP11-11N9.4	ENSG00000247134.7	ENST00000659524.1:ENST00000666042.1:ENST00000664284.1:ENST00000666659.1:ENST00000657565.1:ENST00000670899.1:ENST00000666221.1:ENST00000671310.1:ENST00000655535.1:ENST00000665465.1:ENST00000658837.1:ENST00000500843.2:ENST00000520819.6	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	4.0322	4.31545	4.5987	0.00588589	9.0208e-4	0.0427941	0.0102618
chr17	59677109	59677188	16295407	0	+	0.405063	(0.39,0.42]	chr17	1321703	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	3.52881	4.31542	5.10203	5.61812e-5	1.50713e-8	0.00124771	1.10464e-6
chr12	46363775	46363826	13314339	0	-	0.392157	(0.39,0.42]	chr12	1043595	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551374.5:ENST00000612232.1:ENST00000548111.5:ENST00000548236.5:ENST00000552414.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.3111	4.315395	5.31969	2.11919e-4	2.68682e-5	0.00357806	6.19143e-4
chr1	173863900	173863998	1373002	0	-	0.408163	(0.39,0.42]	chr1	139931	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GAS5	ENSG00000234741.8	ENST00000651080.1:ENST00000449289.5:ENST00000430245.5:ENST00000431268.5:ENST00000436656.5:ENST00000412059.5:ENST00000450589.5:ENST00000452197.5:ENST00000436285.5:ENST00000448718.5:ENST00000456812.6:ENST00000414075.5:ENST00000422183.5:ENST00000454813.1:ENST00000422207.5:ENST00000454068.5:ENST00000650796.1:ENST00000444470.5:ENST00000434796.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	129	2	4.12678	4.314835	4.50289	7.24702e-7	2.11403e-10	3.39777e-5	2.63976e-8
chr11	112043465	112043533	12135911	0	+	0.455882	(0.455,0.49]	chr11	934798	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1:ENST00000680154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.26593	4.3145	4.36307	0.00372962	0.00218641	0.0302984	0.0208941
chr14	73192716	73192790	14395034	0	+	0.459459	(0.455,0.49]	chr14	1124529	2	CDS	CDS:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.26593	4.3145	4.36307	0.00372962	0.00218641	0.0302984	0.0208941
chr5	135343259	135343346	6847258	0	-	0.482759	(0.455,0.49]	chr5	523990	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MACROH2A1	ENSG00000113648.16	ENST00000511689.5:ENST00000512507.5:ENST00000451949.6:ENST00000304332.8:ENST00000312469.8:ENST00000360597.8:ENST00000511494.5:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000505827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.26593	4.3145	4.36307	0.00372962	0.00218641	0.0302984	0.0208941
chr2	8747943	8748000	2504743	0	-	0.526316	(0.49,0.53]	chr2	225912	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KIDINS220	ENSG00000134313.16	ENST00000569008.2:ENST00000496383.5:ENST00000256707.8:ENST00000473731.5:ENST00000488729.5:ENST00000489024.5:ENST00000638224.1:ENST00000459813.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	4.06942	4.314355	4.55929	0.00116196	3.44689e-5	0.0130851	7.57659e-4
chr5	179709872	179709923	6414255	0	+	0.392157	(0.39,0.42]	chr5	499165	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	270	2	3.4972	4.3142	5.1312	2.12087e-7	1e-12	1.19792e-5	2.25522e-10
chr2	61478253	61478347	2690339	0	-	0.382979	(0.36,0.39]	chr2	240316	7	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	3.67691	4.314045	4.95118	2.38454e-5	5.05967e-8	6.18922e-4	3.11657e-6
chr1	25306662	25306729	103810	0	+	0.537313	(0.53,0.59]	chr1	12160	2	CDS	CDS:EXON_MRNA:INTRON	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	66	2	4.13569	4.313995	4.4923	2.50241e-5	2.39218e-6	5.82427e-4	9.1799e-5
chr20	62388308	62388368	17861422	0	+	0.5	(0.49,0.53]	chr20	1510058	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	430	2	4.17418	4.313885	4.45359	6.32083e-12	1e-12	1.25978e-9	2.25522e-10
chr5	72208680	72208778	6027884	0	+	0.326531	(0.29,0.33]	chr5	472574	36	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	2.83716	4.3137550000000005	5.79035	1.69403e-4	7.26161e-7	0.00298622	3.03698e-5
chr7	103092476	103092564	8440884	0	+	0.454545	(0.42,0.455]	chr7	644967	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1:ENST00000431642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	106	2	4.04272	4.31373	4.58474	1.24651e-7	1.29366e-8	6.75184e-6	1.05882e-6
chr17	7240853	7240919	16429076	0	-	0.439394	(0.42,0.455]	chr17	1339316	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GABARAP:CTD-2545G14.7	ENSG00000170296.10:ENSG00000262526.2	ENST00000302386.10:ENST00000577035.5:ENST00000570760.2:ENST00000570856.1:ENST00000571129.5:ENST00000571253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	3.82658	4.31361	4.80064	3.0479e-4	7.38339e-7	0.00472028	3.082e-5
chr19	11113610	11113686	17230113	0	+	0.565789	(0.53,0.59]	chr19	1419589	2	CDS	CDS:EXON_MRNA:PRIMIRNA	LDLR:MIR6886	ENSG00000130164.14:ENSG00000284553.1	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000619864.1:ENST00000559340.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	6	163	2	4.14313	4.313505	4.48388	7.34074e-7	4.48962e-10	3.41945e-5	5.16265e-8
chr21	33554002	33554101	18101197	0	+	0.393939	(0.39,0.42]	chr21	1534527	34	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.16612	4.313485	5.46085	4.03393e-4	5.81708e-6	0.00550292	1.921e-4
chr1	54853522	54853612	1030585	0	-	0.588889	(0.53,0.59]	chr1	106991	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	107	2	3.69065	4.31346	4.93627	3.04331e-4	9.27623e-10	0.00472028	9.83408e-8
chrX	53536475	53536571	19077188	0	-	0.510417	(0.49,0.53]	chrX	1622648	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000474971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	4.14824	4.31343	4.47862	2.04708e-5	4.15989e-8	5.45523e-4	2.62586e-6
chr10	119169176	119169259	11717956	0	-	0.554217	(0.53,0.59]	chr10	893958	1	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	4.30776	4.31335	4.31894	0.00407289	7.82085e-6	0.0324137	2.24148e-4
chr13	24988576	24988663	13934553	0	-	0.471264	(0.455,0.49]	chr13	1093492	1	EXON_PSEUDO	EXON_PSEUDO	RPL34P27	ENSG00000232858.1	ENST00000428810.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	4.1185600000000004	4.313305	4.50805	0.00122223	2.49433e-5	0.0135383	5.8178e-4
chr10	119035939	119036038	11717187	0	-	0.30303	(0.29,0.33]	chr10	893755	24	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.8228	4.31301	4.80322	2.14303e-4	1.45428e-4	0.00359478	0.00244094
chrX	13343720	13343819	18585132	0	+	0.242424	[0,0.29]	chrX	1587435	20	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	3.08203	4.312795	5.54356	7.1311e-4	2.29995e-6	0.0085671400000000009	8.86852e-5
chr6	36108546	36108646	7132616	0	+	0.52	(0.49,0.53]	chr6	549275	2	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	4.30878	4.312725	4.31667	7.12421e-6	1.62178e-7	2.28404e-4	8.48798e-6
chr8	70586894	70586946	9881408	0	-	0.346154	(0.33,0.36]	chr8	746928	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	4.12803	4.312415	4.4968	2.90032e-5	2.94972e-8	7.24986e-4	1.96507e-6
chrX	72277195	72277248	19108009	0	-	0.566038	(0.53,0.59]	chrX	1625656	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS4X	ENSG00000198034.11	ENST00000316084.10:ENST00000373626.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	924	2	3.87103	4.311935	4.75284	2.73636e-11	1e-12	4.71577e-9	2.25522e-10
chr11	125580092	125580148	12194168	0	+	0.482143	(0.455,0.49]	chr11	940660	1	CDS	CDS:UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000531636.5:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.65079	4.311685	4.97258	3.61776e-4	1.84876e-4	0.00544764	0.00296795
chr12	110344885	110344971	13085894	0	+	0.593023	(0.59,1]	chr12	1020544	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	180	2	3.02425	4.31165	5.59905	3.23511e-4	4.98138e-9	0.00498177	4.22807e-7
chr1	156009650	156009750	1313066	0	-	0.46	(0.455,0.49]	chr1	133082	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5:ENST00000531790.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.56037	4.3115950000000005	5.06282	5.72551e-4	1.16789e-4	0.0078026	0.0020505
chr19	1918888	1918939	17194508	0	+	0.470588	(0.455,0.49]	chr19	1412485	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SCAMP4	ENSG00000227500.10	ENST00000452128.6:ENST00000414057.6:ENST00000460767.5:ENST00000316097.13:ENST00000489554.1:ENST00000409472.5:ENST00000411971.5:ENST00000621748.1:ENST00000585335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.56037	4.3115950000000005	5.06282	5.72551e-4	1.16789e-4	0.0078026	0.0020505
chr2	157308566	157308647	2152619	0	+	0.395062	(0.39,0.42]	chr2	198624	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.70591	4.31157	5.91723	0.0185716	5.41457e-7	0.0932453	2.37407e-5
chr3	49028430	49028494	4171719	0	-	0.59375	(0.59,1]	chr3	350239	1	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1:ENST00000485500.1:ENST00000496837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	3.42646	4.31147	5.19648	7.35336e-4	1.57704e-4	0.00921643	0.00261303
chr1	43977790	43977885	169388	0	+	0.505263	(0.49,0.53]	chr1	21856	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	156	2	3.9967800000000002	4.31127	4.62576	7.32131e-7	8.75714e-10	3.41344e-5	9.34886e-8
chr1	17416479	17416562	874101	0	-	0.518072	(0.49,0.53]	chr1	89630	1	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.70307	4.31121	5.91935	0.00363585	5.27035e-7	0.0298137	2.57927e-5
chr12	57234261	57234361	12902154	0	+	0.55	(0.53,0.59]	chr12	1005217	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	4.18373	4.31118	4.43863	0.00254763	1.85867e-5	0.0233955	4.56627e-4
chr5	75350094	75350148	6037044	0	+	0.425926	(0.42,0.455]	chr5	473613	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	158	2	4.04514	4.3111049999999995	4.57707	4.52823e-9	6.85641e-10	3.91237e-7	8.2164e-8
chr12	124814960	124815037	13600529	0	-	0.623377	(0.59,1]	chr12	1071733	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	100	2	1.96195	4.31106	6.66017	0.0144738	2.62838e-7	0.0790046	1.27591e-5
chr5	73498407	73498493	6032136	0	+	0.593023	(0.59,1]	chr5	473072	1	UTR5	UTR5:EXON_MRNA	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000512257.1:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000510787.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	482	2	3.04801	4.31092	5.57383	5.94396e-6	5.70621e-12	1.96056e-4	1.0595e-9
chr12	102075000	102075094	13508140	0	-	0.425532	(0.42,0.455]	chr12	1061936	1	CDS	CDS:UTR3:EXON_MRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000546385.5:ENST00000251074.5:ENST00000547269.1:ENST00000551744.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	4.22524	4.310825	4.39641	1.2079e-5	4.03242e-6	3.52389e-4	1.29746e-4
chr11	57738663	57738725	11952415	0	+	0.467742	(0.455,0.49]	chr11	914732	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	3.55829	4.310555	5.06282	1.16789e-4	4.15156e-5	0.0020505	9.7509e-4
chr9	15465034	15465131	10585308	0	-	0.309278	(0.29,0.33]	chr9	801186	11	UTR3	UTR3:EXON_MRNA	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.99453	4.310420000000001	4.62631	8.03892e-5	6.57711e-7	0.00167226	2.80312e-5
chr22	20949745	20949845	18300180	0	+	0.5	(0.49,0.53]	chr22	1553646	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	120	2	4.15341	4.310195	4.46698	5.7246e-7	2.85894e-9	2.75701e-5	2.62069e-7
chr12	50453530	50453601	12871947	0	+	0.464789	(0.455,0.49]	chr12	1000155	2	CDS	CDS:EXON_MRNA:INTRON	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000614335.4:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.92901	4.310029999999999	5.69105	0.00141135	2.83777e-6	0.0151901	9.62519e-5
chr5	173020237	173020331	6388217	0	+	0.43617	(0.42,0.455]	chr5	496190	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.19078	4.309735	5.42869	0.00310864	1.60756e-5	0.0274272	4.07445e-4
chr1	145993094	145993189	1270242	0	-	0.421053	(0.42,0.455]	chr1	125527	8	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	9	156	2	3.5655	4.309675	5.05385	5.27607e-8	1.25501e-10	3.2354e-6	1.83699e-8
chr7	74189821	74189918	8334001	0	+	0.484536	(0.455,0.49]	chr7	634953	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.45014	4.30931	6.16848	0.00397453	8.97995e-8	0.0322851	5.08654e-6
chr19	10287308	10287406	17224663	0	+	0.663265	(0.59,1]	chr19	1418513	3	CDS	CDS:EXON_MRNA	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.39292	4.309205	5.22549	0.00192565	5.13843e-4	0.0191769	0.00665221
chr12	123597119	123597216	13127192	0	+	0.412371	(0.39,0.42]	chr12	1025792	5	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000543425.1:ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	4.08008	4.309195	4.53831	1.30829e-6	1.01757e-6	5.53834e-5	4.04731e-5
chr7	103565277	103565368	8963928	0	-	0.461538	(0.455,0.49]	chr7	686214	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	3.97859	4.309185	4.63978	6.94032e-4	2.2191e-6	0.00876781	7.82023e-5
chr1	202728548	202728645	1451710	0	-	0.371134	(0.36,0.39]	chr1	145774	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.33241	4.30913	5.28585	0.00193631	2.81625e-5	0.0192272	6.42183e-4
chr20	33562133	33562233	17759759	0	+	0.4	(0.39,0.42]	chr20	1499841	715	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.93996	4.3088049999999996	4.67765	0.00841622	7.04737e-4	0.054565	0.00848325
chr3	37047589	37047689	3411101	0	+	0.41	(0.39,0.42]	chr3	296345	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1:ENST00000673741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	3.93996	4.3088049999999996	4.67765	0.00841622	7.04737e-4	0.054565	0.00848325
chr10	32926029	32926109	11444152	0	-	0.45	(0.42,0.455]	chr10	872671	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	3.87922	4.30851	4.7378	1.04705e-4	4.0066e-9	0.0020295	3.51297e-7
chr5	80651943	80652040	6667615	0	-	0.484536	(0.455,0.49]	chr5	514741	20	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	157	2	3.58827	4.30839	5.02851	9.42518e-7	9.03499e-12	4.20925e-5	1.58863e-9
chr8	56962401	56962500	9836815	0	-	0.424242	(0.42,0.455]	chr8	744432	46	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.70451	4.30832	4.91213	2.72131e-4	1.75074e-4	0.00404713	0.00306313
chr7	36423879	36423943	8230660	0	+	0.375	(0.36,0.39]	chr7	627519	2	CDS	CDS:EXON_MRNA:INTRON	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000446635.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.58637	4.308285	5.0302	5.84377e-4	1.15931e-4	0.00793559	0.00204552
chr17	28879994	28880088	16488318	0	-	0.659574	(0.59,1]	chr17	1348326	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.82178	4.30814	4.7945	0.0031766	2.76767e-4	0.0279054	0.00409634
chr17	1361160	1361229	16398542	0	-	0.449275	(0.42,0.455]	chr17	1334251	2	CDS	CDS:EXON_MRNA:INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	3.501	4.3080549999999995	5.11511	8.62752e-6	1.06424e-8	2.43605e-4	9.02974e-7
chr2	58251537	58251636	1830045	0	+	0.69697	(0.59,1]	chr2	174311	2	EXON_PSEUDO	EXON_PSEUDO	EIF3FP3	ENSG00000233426.3	ENST00000434851.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	58	2	4.07389	4.30786	4.54183	0.0070583	7.9402e-5	0.0478044	0.00150391
chrX	44741086	44741183	18677976	0	+	0.525773	(0.49,0.53]	chrX	1592581	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP61	ENSG00000214016.3	ENST00000412542.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	76	2	3.23006	4.307805	5.38555	0.00253719	1.36815e-9	0.0233955	1.38676e-7
chr11	61810972	61811023	12406027	0	-	0.470588	(0.455,0.49]	chr11	960619	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5:ENST00000491310.5:ENST00000544696.5:ENST00000466716.5:ENST00000544309.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	158	2	4.05707	4.307785000000001	4.5585	3.18498e-9	1.0917e-9	3.13505e-7	1.1312e-7
chr5	179730542	179730642	6414479	0	+	0.35	(0.33,0.36]	chr5	499211	20	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	240	2	4.2123	4.30774	4.40318	1.61889e-10	1.07614e-12	2.31588e-8	2.40283e-10
chr20	34741454	34741553	17948853	0	-	0.454545	(0.42,0.455]	chr20	1520152	12	CDS	CDS:EXON_MRNA:INTRON	NCOA6	ENSG00000198646.14	ENST00000628752.2:ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.70273	4.30743	4.91213	0.0215502	1.75074e-4	0.102904	0.00306313
chr3	49101354	49101441	4172475	0	-	0.494253	(0.49,0.53]	chr3	350374	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000636018.1:ENST00000637543.1:ENST00000494838.6:ENST00000470225.6:ENST00000635443.1:ENST00000494767.2:ENST00000635541.1:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5:ENST00000482261.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.95291	4.307315	5.66172	0.00119735	3.99372e-6	0.0134293	1.28691e-4
chr6	151225947	151226043	8021990	0	-	0.583333	(0.53,0.59]	chr6	613048	1	INTRON	INTRON	RP1-292B18.4	ENSG00000223598.1	ENST00000415477.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	3.94515	4.307255	4.66936	0.00103174	3.18429e-6	0.0121443	1.06148e-4
chr11	5342869	5342962	12241522	0	-	0.408602	(0.39,0.42]	chr11	946162	3	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	93	2	3.77583	4.307135000000001	4.83844	1.05659e-5	1.42748e-9	3.15727e-4	1.43979e-7
chr11	111857662	111857724	12603257	0	-	0.419355	(0.39,0.42]	chr11	977139	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG9:RP11-108O10.8	ENSG00000086848.15:ENSG00000258529.5	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000613181.4:ENST00000527714.5:ENST00000618252.1:ENST00000612489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.1206	4.30692	4.49324	0.00597537	0.00108192	0.0428562	0.0124943
chr12	110486374	110486454	13086152	0	+	0.4	(0.39,0.42]	chr12	1020583	1	CDS	CDS:UTR3:EXON_MRNA	FAM216A	ENSG00000204856.12	ENST00000538285.6:ENST00000548869.1:ENST00000548449.1:ENST00000377673.10:ENST00000546396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.1206	4.30692	4.49324	0.00597537	0.00108192	0.0428562	0.0124943
chr2	17739865	17739960	2533711	0	-	0.410526	(0.39,0.42]	chr2	227957	12	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000381272.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.1206	4.30692	4.49324	0.00597537	0.00108192	0.0428562	0.0124943
chr6	33416771	33416776	7669549	0	-	0.4	(0.39,0.42]	chr6	587669	1	CDS	CDS:UTR3:EXON_MRNA	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.1206	4.30692	4.49324	0.00597537	0.00108192	0.0428562	0.0124943
chrX	78012878	78012956	18745988	0	+	0.397436	(0.39,0.42]	chrX	1599714	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.1206	4.30692	4.49324	0.00597537	0.00108192	0.0428562	0.0124943
chr6	26273075	26273165	7101679	0	+	0.555556	(0.53,0.59]	chr6	542885	1	CDS	CDS:EXON_MRNA	H2BC10	ENSG00000278588.2	ENST00000377733.4	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	3.69224	4.3068100000000005	4.92138	1.78865e-5	9.75317e-8	4.45448e-4	6.11764e-6
chr18	46087064	46087148	17103827	0	-	0.511905	(0.49,0.53]	chr18	1404360	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	97	2	4.18697	4.3068	4.42663	4.38216e-7	6.48162e-8	2.20292e-5	3.85234e-6
chr1	27897632	27897707	910835	0	-	0.48	(0.455,0.49]	chr1	95247	1	CDS	CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.10535	4.306699999999999	4.50805	0.0064531	0.00122223	0.0450905	0.0135383
chr21	10468447	10468546	18044365	0	+	0.474747	(0.455,0.49]	chr21	1531134	31	INTRON	INTRON	BAGE2	ENSG00000187172.15	ENST00000470054.5:ENST00000496773.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	18	2	4.10535	4.306699999999999	4.50805	0.0064531	0.00122223	0.0450905	0.0135383
chr3	184304010	184304074	3949043	0	+	0.484375	(0.455,0.49]	chr3	332322	2	CDS	CDS:EXON_MRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000466987.1:ENST00000488085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.10535	4.306699999999999	4.50805	0.0064531	0.00122223	0.0450905	0.0135383
chr5	177305870	177305914	6406825	0	+	0.477273	(0.455,0.49]	chr5	498055	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000503853.1:ENST00000510701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.10535	4.306699999999999	4.50805	0.0064531	0.00122223	0.0450905	0.0135383
chrX	142203241	142203333	19261780	0	-	0.478261	(0.455,0.49]	chrX	1636101	4	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.10535	4.306699999999999	4.50805	0.0064531	0.00122223	0.0450905	0.0135383
chr1	160267225	160267324	1328441	0	-	0.454545	(0.42,0.455]	chr1	135909	1	INTRON	INTRON	RP11-574F21.3	ENSG00000258465.8	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.41041	4.306545	5.20268	1.00299e-4	3.59669e-5	0.00180803	8.71318e-4
chr22	21762944	21763044	18442380	0	-	0.46	(0.455,0.49]	chr22	1572508	34	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	16	308	2	3.99548	4.30643	4.61738	1.14965e-10	1.00164e-12	1.69824e-8	2.25746e-10
chrX	120626309	120626403	19197520	0	-	0.404255	(0.39,0.42]	chrX	1632210	1	CDS	CDS:EXON_MRNA	C1GALT1C1	ENSG00000171155.8	ENST00000304661.6:ENST00000371313.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.28128	4.30629	4.3313	0.00342611	0.00209984	0.0283456	0.0204266
chr1	9751611	9751681	854844	0	-	0.471429	(0.455,0.49]	chr1	86314	3	CDS	CDS:EXON_MRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.20189	4.30615	4.41041	0.00397662	0.00218771	0.0322851	0.0202707
chr1	150751744	150751844	1290276	0	-	0.46	(0.455,0.49]	chr1	128448	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1:ENST00000679582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.20189	4.30615	4.41041	0.00397662	0.00218771	0.0322851	0.0202707
chr1	151873709	151873807	1294607	0	-	0.489796	(0.455,0.49]	chr1	129655	30	UTR3	UTR3:EXON_MRNA	THEM4	ENSG00000159445.13	ENST00000368814.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.20189	4.30615	4.41041	0.00397662	0.00218771	0.0322851	0.0202707
chr4	109473003	109473094	5039195	0	+	0.461538	(0.455,0.49]	chr4	409923	1	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.63686	4.306055	4.97525	1.38474e-4	3.17276e-6	0.00254294	1.05915e-4
chr17	1660431	1660504	16401374	0	-	0.465753	(0.455,0.49]	chr17	1334874	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.46389	4.305815	5.14774	9.14164e-4	7.45457e-5	0.0110519	0.00142165
chr1	43977025	43977120	169380	0	+	0.642105	(0.59,1]	chr1	21854	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	342	2	4.21313	4.3057099999999995	4.39829	4.93205e-8	1.81447e-8	3.04549e-6	1.411e-6
chr4	139695196	139695267	5129449	0	+	0.366197	(0.36,0.39]	chr4	415325	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	3.74524	4.3056350000000005	4.86603	1.68962e-4	1.17259e-5	0.00297945	3.12994e-4
chr7	121244201	121244269	8496303	0	+	0.514706	(0.49,0.53]	chr7	648418	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	4.28332	4.305505	4.32769	0.00338762	6.54988e-6	0.0288632	1.94116e-4
chr3	156541722	156541820	4538649	0	-	0.346939	(0.33,0.36]	chr3	376076	23	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	7	126	2	4.00369	4.305384999999999	4.60708	2.22128e-7	5.44916e-11	1.24655e-5	7.92792e-9
chr1	65414519	65414619	251472	0	+	0.35	(0.33,0.36]	chr1	28747	16	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.77872	4.30535	4.83198	1.88689e-4	9.40708e-6	0.0032588	2.61824e-4
chr3	186249160	186249260	4630544	0	-	0.56	(0.53,0.59]	chr3	382436	62	INTRON	INTRON	DGKG	ENSG00000058866.15	ENST00000265022.8:ENST00000344484.8:ENST00000382164.8:ENST00000480809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	3.6522	4.305225	4.95825	2.87508e-4	2.31822e-5	0.00457439	5.49766e-4
chr8	6730710	6730758	9180496	0	+	0.5	(0.49,0.53]	chr8	701024	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.78773	4.30495	5.82217	0.00257389	1.36598e-6	0.0235767	5.18684e-5
chr7	92280896	92280996	8397775	0	+	0.48	(0.455,0.49]	chr7	639546	340	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	4	102	2	4.03349	4.3049	4.57631	4.13044e-5	9.17783e-10	9.71332e-4	9.75916e-8
chr16	89718073	89718165	15811119	0	+	0.543478	(0.53,0.59]	chr16	1258962	9	EXON_LNCRNA	EXON_LNCRNA	VPS9D1-AS1	ENSG00000261373.1	ENST00000562866.1:ENST00000562298.1	lncRNA	lncRNA	lncRNA	lncRNA	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr17	76039805	76039869	16686744	0	-	0.5625	(0.53,0.59]	chr17	1374121	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SRP68	ENSG00000167881.15	ENST00000602720.5:ENST00000307877.7:ENST00000588643.1:ENST00000539137.5:ENST00000542536.6:ENST00000592704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr2	191836617	191836717	3089803	0	-	0.55	(0.53,0.59]	chr2	273160	7	CDS	CDS:EXON_MRNA	CAVIN2	ENSG00000168497.5	ENST00000304141.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr3	50358681	50358775	4177898	0	-	0.56383	(0.53,0.59]	chr3	351837	6	CDS	CDS:EXON_MRNA	TMEM115	ENSG00000126062.4	ENST00000266025.4	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr3	129394579	129394673	4444212	0	-	0.56383	(0.53,0.59]	chr3	369367	4	INTRON	INTRON	RPL32P3	ENSG00000251474.6	ENST00000510078.5:ENST00000507287.5:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr9	35063028	35063080	10638136	0	-	0.538462	(0.53,0.59]	chr9	804531	2	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000680520.1:ENST00000681789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr9	122322716	122322815	10452447	0	+	0.555556	(0.53,0.59]	chr9	787022	2	UTR3	UTR3:EXON_MRNA	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000373723.9:ENST00000373729.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.30195	4.304855	4.30776	0.00421989	0.00407289	0.0328662	0.0324137
chr14	51247155	51247220	14278775	0	+	0.415385	(0.39,0.42]	chr14	1116405	2	CDS	CDS:UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	3.71739	4.304785	4.89218	1.6518e-4	1.41698e-5	0.0029267300000000002	3.66245e-4
chr1	55057330	55057422	203779	0	+	0.608696	(0.59,1]	chr1	26152	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	360	2	4.00241	4.3047699999999995	4.60713	1.13199e-6	7.7416e-10	4.90979e-5	8.3387e-8
chr8	63023906	63023997	9852000	0	-	0.263736	[0,0.29]	chr8	745332	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGH	ENSG00000137563.13	ENST00000677482.1:ENST00000677459.1:ENST00000678069.1:ENST00000523788.2:ENST00000518466.6:ENST00000260118.7:ENST00000677919.1:ENST00000677327.1:ENST00000679326.1:ENST00000520609.5:ENST00000678045.1:ENST00000518113.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	4.03506	4.30461	4.57416	6.75561e-4	4.20009e-5	0.00873562	8.92247e-4
chr1	42757852	42757922	966548	0	-	0.442857	(0.42,0.455]	chr1	101762	2	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr1	72274551	72274637	286751	0	+	0.453488	(0.42,0.455]	chr1	30586	1	EXON_PSEUDO	EXON_PSEUDO	GDI2P2	ENSG00000233994.2	ENST00000445131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr1	205351321	205351396	675756	0	+	0.426667	(0.42,0.455]	chr1	68286	2	EXON_PSEUDO	EXON_PSEUDO	SNRPGP10	ENSG00000235363.1	ENST00000432323.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr1	226438563	226438660	738606	0	+	0.43299	(0.42,0.455]	chr1	74509	1	EXON_PSEUDO	EXON_PSEUDO	RPS3AP7	ENSG00000229965.1	ENST00000411586.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr14	67382501	67382556	14360552	0	+	0.436364	(0.42,0.455]	chr14	1122463	2	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1:ENST00000554332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr2	218354372	218354472	2389019	0	+	0.44	(0.42,0.455]	chr2	214514	4	EXON_PSEUDO	EXON_PSEUDO	RPL19P5	ENSG00000230580.1	ENST00000414167.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr21	28958385	28958462	18201386	0	-	0.428571	(0.42,0.455]	chr21	1544571	1	CDS	CDS:EXON_MRNA	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000486427.1:ENST00000475344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr4	55370091	55370189	4842993	0	+	0.438776	(0.42,0.455]	chr4	398903	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SRD5A3:RP11-177J6.2	ENSG00000128039.13:ENSG00000288695.1	ENST00000679836.1:ENST00000679707.1:ENST00000264228.9:ENST00000679351.1:ENST00000680700.1:ENST00000505210.1:ENST00000678717.1:ENST00000677177.2:ENST00000677217.1:ENST00000677930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr4	94575615	94575698	4984357	0	+	0.445783	(0.42,0.455]	chr4	407384	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.8515	4.30439	4.75728	0.0119089	5.3817e-4	0.0686664	0.00686676
chr1	93909063	93909163	1175634	0	-	0.74	(0.59,1]	chr1	115725	1	CDS_START	CDS_START:CDS:EXON_MRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.2353	4.304265	4.37323	0.0165254	0.00990413	0.0873033	0.061536
chr1	225845247	225845347	738305	0	+	0.62	(0.59,1]	chr1	74444	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EPHX1	ENSG00000143819.13	ENST00000272167.10:ENST00000614058.4:ENST00000366837.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.2353	4.304265	4.37323	0.0165254	0.00990413	0.0873033	0.061536
chr16	29383211	29383309	15909047	0	-	0.622449	(0.59,1]	chr16	1274086	18	CDS	CDS:EXON_MRNA	NPIPB11	ENSG00000254206.5	ENST00000524087.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.2353	4.304265	4.37323	0.0165254	0.00990413	0.0873033	0.061536
chr16	70398350	70398430	15998066	0	-	0.7125	(0.59,1]	chr16	1284797	3	CDS	CDS:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.2353	4.304265	4.37323	0.0165254	0.00990413	0.0873033	0.061536
chr10	12195862	12195956	11370689	0	-	0.606383	(0.59,1]	chr10	867205	2	UTR5	UTR5:EXON_MRNA	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000537776.5:ENST00000378940.7	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.26354	4.304205	4.34487	0.0134233	0.0123678	0.0743429	0.0705839
chr10	104315277	104315373	11678453	0	-	0.677083	(0.59,1]	chr10	891073	9	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.26354	4.304205	4.34487	0.0134233	0.0123678	0.0743429	0.0705839
chr12	6534511	6534516	12713574	0	+	0.6	(0.59,1]	chr12	986633	1	EXON_MRNA	EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000496049.1	protein_coding	retained_intron	protein_coding	retained_intron	0	25	2	4.26354	4.304205	4.34487	0.0134233	0.0123678	0.0743429	0.0705839
chr12	57500387	57500454	12902864	0	+	0.626866	(0.59,1]	chr12	1005381	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000551892.1:ENST00000552371.1:ENST00000549827.1:ENST00000548944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	25	2	4.26354	4.304205	4.34487	0.0134233	0.0123678	0.0743429	0.0705839
chr19	41386632	41386725	17568833	0	-	0.623656	(0.59,1]	chr19	1476948	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOSC5	ENSG00000077348.9	ENST00000221233.9:ENST00000602129.1:ENST00000596905.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.26354	4.304205	4.34487	0.0134233	0.0123678	0.0743429	0.0705839
chr17	4705056	4705136	16418899	0	-	0.525	(0.49,0.53]	chr17	1337590	4	EXON_PSEUDO	EXON_PSEUDO	RP11-314A20.1	ENSG00000213939.4	ENST00000466297.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	50	2	3.73494	4.3037849999999995	4.87263	0.0189345	1.15551e-7	0.0934721	6.3314e-6
chr5	80651845	80651943	6667614	0	-	0.44898	(0.42,0.455]	chr5	514741	19	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	364	2	3.40873	4.3036449999999995	5.19856	2.6682e-8	1e-12	1.97197e-6	2.25522e-10
chr2	42353275	42353343	2616626	0	-	0.455882	(0.455,0.49]	chr2	235517	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COX7A2L	ENSG00000115944.15	ENST00000468711.5:ENST00000378669.5:ENST00000234301.3:ENST00000482463.5:ENST00000464443.5:ENST00000607768.1:ENST00000463055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	3.20348	4.30359	5.4037	3.27782e-4	1.20695e-5	0.0046686	3.52389e-4
chr14	103374523	103374621	14795304	0	-	0.602041	(0.59,1]	chr14	1159529	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP5	ENSG00000243904.1	ENST00000485258.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	138	2	4.06326	4.303585	4.54391	7.07916e-6	4.19122e-6	2.27834e-4	1.3377e-4
chrX	153351044	153351143	18914099	0	+	0.50505	(0.49,0.53]	chrX	1610850	32	UTR3	UTR3:EXON_MRNA	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3:ENST00000647705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.52637	4.30349	5.08061	6.68602e-4	1.00361e-4	0.00820018	0.00196575
chr6	30688851	30688942	7658947	0	-	0.637363	(0.59,1]	chr6	584181	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	106	2	4.04046	4.3034300000000005	4.5664	9.42839e-5	6.21388e-6	0.0017195000000000001	2.03021e-4
chr1	156020896	156020951	1313194	0	-	0.563636	(0.53,0.59]	chr1	133123	1	UTR5	UTR5:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000531790.5:ENST00000368311.5:ENST00000472898.5:ENST00000466905.4:ENST00000474377.5:ENST00000526212.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	4.16383	4.30319	4.44255	0.00659193	3.41603e-6	0.0454205	1.12474e-4
chr7	147167343	147167419	8597200	0	+	0.421053	(0.42,0.455]	chr7	656419	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	CNTNAP2:RANP2	ENSG00000174469.23:ENSG00000232391.1	ENST00000361727.8:ENST00000638117.1:ENST00000637694.1:ENST00000636870.1:ENST00000637825.1:ENST00000456833.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	2	41	2	2.89192	4.303095	5.71427	0.00157686	1.33053e-6	0.015761	5.6008e-5
chr17	32493007	32493104	16499652	0	-	0.371134	(0.36,0.39]	chr17	1350073	6	UTR3	UTR3:EXON_MRNA	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.30591	4.30307	5.30023	1.89047e-4	1.38946e-5	0.003022	3.94563e-4
chr17	80135302	80135395	16704230	0	-	0.387097	(0.36,0.39]	chr17	1376642	11	UTR3	UTR3:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000570625.5:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.30591	4.30307	5.30023	1.89047e-4	1.38946e-5	0.003022	3.94563e-4
chr2	222908964	222909057	2405995	0	+	0.333333	(0.33,0.36]	chr2	216556	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	75	2	3.14227	4.302960000000001	5.46365	1.5366e-4	4.15679e-10	0.00279114	4.81804e-8
chr1	19231260	19231341	877261	0	-	0.469136	(0.455,0.49]	chr1	90461	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	3.81698	4.302849999999999	4.78872	7.1534e-6	2.38616e-9	2.29129e-4	2.24337e-7
chr1	159918899	159918941	1326676	0	-	0.47619	(0.455,0.49]	chr1	135581	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	93	2	4.28007	4.30283	4.32559	8.3464e-6	9.90251e-9	2.58924e-4	7.695e-7
chr1	162529232	162529331	507555	0	+	0.272727	[0,0.29]	chr1	54762	68	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	4.19689	4.302695	4.4085	1.47735e-7	2.79492e-8	8.80143e-6	1.8758e-6
chr20	34588452	34588529	17947300	0	-	0.467532	(0.455,0.49]	chr20	1520055	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.20069	4.302194999999999	5.4037	0.00285821	1.20695e-5	0.0245841	3.52389e-4
chr11	27889835	27889935	12317017	0	-	0.45	(0.42,0.455]	chr11	952778	11	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	109	2	3.78199	4.30203	4.82207	1.02596e-6	1.82819e-9	4.51911e-5	1.78862e-7
chr5	179709923	179710023	6414256	0	+	0.43	(0.42,0.455]	chr5	499166	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	908	2	3.91732	4.30203	4.68674	1.63328e-11	1e-12	2.94347e-9	2.25522e-10
chr5	126821059	126821135	6202691	0	+	0.394737	(0.39,0.42]	chr5	483209	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	80	2	3.85207	4.301845	4.75162	1.28587e-4	3.24434e-9	0.00241206	2.92857e-7
chr17	7586898	7586957	16105788	0	+	0.610169	(0.59,1]	chr17	1297027	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000585188.5:ENST00000578267.5:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000584479.5:ENST00000576066.5:ENST00000579445.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000581380.1:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.4666	4.3016950000000005	5.13679	0.00133574	9.28022e-4	0.0139317	0.0111748
chr4	13542440	13542528	5316398	0	-	0.761364	(0.59,1]	chr4	428046	5	CDS	CDS:EXON_MRNA	NKX3-2	ENSG00000109705.8	ENST00000382438.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.4666	4.3016950000000005	5.13679	0.00133574	9.28022e-4	0.0139317	0.0111748
chr17	22204571	22204668	16168817	0	+	0.546392	(0.53,0.59]	chr17	1304328	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	64	2	2.66813	4.301495	5.93486	5.09538e-4	1.0295e-6	0.00662599	4.52516e-5
chr2	30259354	30259450	1706802	0	+	0.583333	(0.53,0.59]	chr2	167573	19	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.47991	4.30146	5.12301	1.2852e-4	6.7738e-5	0.00241206	0.0013157
chr4	165337788	165337857	5206908	0	+	0.376812	(0.36,0.39]	chr4	420263	1	CDS	CDS:UTR5:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	7	150	2	3.71552	4.301295	4.88707	2.15236e-6	2.94575e-12	8.40005e-5	5.92184e-10
chr10	55667799	55667890	11514038	0	-	0.516484	(0.49,0.53]	chr10	877456	6	EXON_PSEUDO	EXON_PSEUDO	GAPDHP21	ENSG00000236993.2	ENST00000450301.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	2.99849	4.301255	5.60402	0.00630123	5.78803e-6	0.0445415	1.75119e-4
chr15	47730242	47730341	15259481	0	-	0.494949	(0.49,0.53]	chr15	1203448	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2270N23.1	ENSG00000213862.4	ENST00000497325.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	2.99849	4.301255	5.60402	0.00630123	5.78803e-6	0.0445415	1.75119e-4
chr4	87391129	87391188	5518554	0	-	0.491525	(0.49,0.53]	chr4	441986	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	2.99849	4.301255	5.60402	0.00630123	5.78803e-6	0.0445415	1.75119e-4
chr3	41233612	41233697	3432558	0	+	0.435294	(0.42,0.455]	chr3	298554	2	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	3.87922	4.30107	4.72292	1.04705e-4	3.66958e-7	0.0020295	1.6957e-5
chr16	154027	154096	15480573	0	+	0.666667	(0.59,1]	chr16	1224147	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	832	2	3.84764	4.300865	4.75409	9.96334e-9	2.65703e-11	7.73654e-7	4.59803e-9
chr7	100621041	100621126	8952162	0	-	0.611765	(0.59,1]	chr7	684152	2	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	144	2	4.21445	4.300470000000001	4.38649	4.37862e-5	5.2008e-7	0.00101529	2.29012e-5
chr1	32172385	32172485	127032	0	+	0.41	(0.39,0.42]	chr1	15636	16	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	31	2	3.82973	4.300395	4.77106	3.03764e-4	1.3728e-4	0.00472028	0.00232973
chr12	49265080	49265130	12865631	0	+	0.54	(0.53,0.59]	chr12	999044	1	UTR5	UTR5:EXON_MRNA:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	424	2	4.01733	4.30009	4.58285	1.31984e-10	1.44718e-12	1.92648e-8	3.12628e-10
chr2	84916560	84916660	1921005	0	+	0.53	(0.49,0.53]	chr2	180721	8	EXON_PSEUDO	EXON_PSEUDO	RPS2P17	ENSG00000213399.3	ENST00000449856.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	34	2	3.11892	4.300050000000001	5.48118	0.00398244	1.24248e-5	0.0322851	3.28918e-4
chr17	50696701	50696760	16264907	0	+	0.440678	(0.42,0.455]	chr17	1319394	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201340.1	ENST00000364470.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	31	2	3.31161	4.299715	5.28782	0.00186138	3.65299e-5	0.018635	7.95843e-4
chr7	72947317	72947416	8330250	0	+	0.444444	(0.42,0.455]	chr7	634065	12	UTR3	UTR3:EXON_MRNA:INTRON	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.31161	4.299715	5.28782	0.00186138	3.65299e-5	0.018635	7.95843e-4
chr1	38864570	38864669	951538	0	-	0.282828	[0,0.29]	chr1	100303	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP5-864K19.7:MYCBP:RP5-864K19.6	ENSG00000273637.1:ENSG00000214114.9:ENSG00000274944.4	ENST00000622355.1:ENST00000397572.5:ENST00000494695.4:ENST00000495043.5:ENST00000489803.5:ENST00000454994.3:ENST00000489575.2:ENST00000621281.1:ENST00000465771.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	22	2	3.63488	4.299595	4.96431	7.12896e-4	1.20737e-4	0.00897774	0.00210079
chr6	149594543	149594624	7481405	0	+	0.271605	[0,0.29]	chr6	571728	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS18P9	ENSG00000220848.5	ENST00000648980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	65	2	4.01809	4.299415	4.58074	3.95788e-6	1.32435e-8	1.39668e-4	9.89386e-7
chr9	100007577	100007633	10772786	0	-	0.303571	(0.29,0.33]	chr9	815439	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	3.08169	4.299355	5.51702	0.00114594	2.16939e-10	0.0130468	2.70307e-8
chr7	106091504	106091604	8977616	0	-	0.33	(0.29,0.33]	chr7	687014	11	UTR3	UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	3.17627	4.299175	5.42208	8.41464e-5	5.31413e-6	0.00158584	1.7831e-4
chr1	152032761	152032823	1295113	0	-	0.516129	(0.49,0.53]	chr1	129728	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.60653	4.298435	4.99034	4.50981e-4	1.6002e-4	0.00605268	0.00286408
chr11	63906118	63906214	11977719	0	+	0.552083	(0.53,0.59]	chr11	918518	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1:ENST00000677303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr11	66845859	66845927	11992846	0	+	0.544118	(0.53,0.59]	chr11	922381	1	CDS	CDS:UTR3:EXON_MRNA	RCE1	ENSG00000173653.8	ENST00000533277.5:ENST00000524506.5:ENST00000309657.8:ENST00000524849.5:ENST00000525356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr15	43792376	43792383	14896732	0	+	0.571429	(0.53,0.59]	chr15	1171338	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	SERF2	ENSG00000140264.21	ENST00000381359.5:ENST00000630046.2:ENST00000674451.1:ENST00000249786.9:ENST00000409646.5:ENST00000409960.6:ENST00000486144.1:ENST00000445816.5:ENST00000409291.5:ENST00000339624.9:ENST00000409617.6:ENST00000448830.2:ENST00000403425.5:ENST00000402131.5:ENST00000475927.5:ENST00000430901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr16	21402881	21402981	15888059	0	-	0.57	(0.53,0.59]	chr16	1271073	6	CDS	CDS:EXON_MRNA	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr19	10920066	10920155	17228506	0	+	0.539326	(0.53,0.59]	chr19	1419241	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586508.1:ENST00000586298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr19	16568100	16568169	17491749	0	-	0.536232	(0.53,0.59]	chr19	1466534	2	CDS	CDS:EXON_MRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000488894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr19	39486895	39486995	17326783	0	+	0.57	(0.53,0.59]	chr19	1435084	4	SS5_PROX	SS5_PROX:INTRON	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000602265.5:ENST00000595961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr2	62147057	62147152	1844805	0	+	0.547368	(0.53,0.59]	chr2	175130	9	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr3	47849629	47849699	3456952	0	+	0.571429	(0.53,0.59]	chr3	301455	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	DHX30:MIR1226	ENSG00000132153.15:ENSG00000221585.1	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000408658.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr3	49013639	49013737	3459277	0	+	0.561224	(0.53,0.59]	chr3	301931	20	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr5	72186622	72186722	6027658	0	+	0.55	(0.53,0.59]	chr5	472549	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12:ENST00000513526.6:ENST00000511641.2:ENST00000504492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.15805	4.29834	4.43863	0.00680952	0.00254763	0.0468196	0.0233955
chr1	6531967	6532023	845104	0	-	0.535714	(0.53,0.59]	chr1	85326	1	CDS	CDS:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr1	19115557	19115637	876034	0	-	0.5875	(0.53,0.59]	chr1	90032	3	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr1	40770920	40771013	155584	0	+	0.569892	(0.53,0.59]	chr1	19530	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NFYC	ENSG00000066136.20	ENST00000427410.6:ENST00000447388.7:ENST00000425457.6:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372652.5:ENST00000372651.5:ENST00000440226.7:ENST00000308733.9:ENST00000414185.1:ENST00000488635.1:ENST00000496608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr1	84563337	84563418	1131385	0	-	0.530864	(0.53,0.59]	chr1	112626	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTBS	ENSG00000117151.13	ENST00000370630.6:ENST00000477677.5:ENST00000465118.6:ENST00000370625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr1	217850479	217850556	1505244	0	-	0.545455	(0.53,0.59]	chr1	150733	2	EXON_PSEUDO	EXON_PSEUDO	UBBP2	ENSG00000228247.1	ENST00000376781.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr12	9239811	9239898	13198868	0	-	0.586207	(0.53,0.59]	chr12	1034443	4	PRIMIRNA	PRIMIRNA:INTRON	A2MP1:MIR1244-3	ENSG00000256069.7:ENSG00000283429.1	ENST00000566278.6:ENST00000635744.1	miRNA	transcribed_unprocessed_pseudogene	miRNA:transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene:primary_miRNA	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr16	1993496	1993596	15490016	0	+	0.58	(0.53,0.59]	chr16	1226581	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SYNGR3	ENSG00000127561.15	ENST00000248121.7:ENST00000618464.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr17	42612426	42612506	16229293	0	+	0.5625	(0.53,0.59]	chr17	1313159	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBG1	ENSG00000131462.9	ENST00000680678.1:ENST00000681413.1:ENST00000680672.1:ENST00000681490.1:ENST00000681947.1:ENST00000588056.2:ENST00000251413.8:ENST00000591509.5:ENST00000589688.2:ENST00000681919.1:ENST00000681114.1:ENST00000680617.1:ENST00000679484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr17	44851083	44851178	16559903	0	-	0.557895	(0.53,0.59]	chr17	1359682	13	UTR3	UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr17	82080219	82080238	16710676	0	-	0.578947	(0.53,0.59]	chr17	1378136	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr19	48970927	48971023	17604740	0	-	0.5625	(0.53,0.59]	chr19	1483507	1	CDS	CDS:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8:ENST00000472004.5:ENST00000496048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr2	173367149	173367217	2218754	0	+	0.588235	(0.53,0.59]	chr2	202928	1	CDS	CDS:EXON_MRNA	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr3	69101916	69101986	3545771	0	+	0.542857	(0.53,0.59]	chr3	308500	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARL6IP5	ENSG00000144746.7	ENST00000273258.4:ENST00000484921.1:ENST00000478935.1:ENST00000470936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr4	48420347	48420447	4826801	0	+	0.58	(0.53,0.59]	chr4	397741	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr5	176492193	176492262	6402522	0	+	0.565217	(0.53,0.59]	chr5	497349	1	CDS	CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000504983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr9	137780905	137781003	10517713	0	+	0.540816	(0.53,0.59]	chr9	797641	8	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.16383	4.29831	4.43279	0.00659193	0.0026472	0.0454205	0.0231864
chr3	185418382	185418481	4625653	0	-	0.545455	(0.53,0.59]	chr3	382004	10	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	56	2	2.85662	4.298095	5.73957	4.88685e-4	3.90343e-6	0.00686067	1.26306e-4
chr13	99549164	99549222	13865515	0	+	0.362069	(0.36,0.39]	chr13	1087207	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	4.24194	4.298019999999999	4.3541	0.00276729	1.06556e-7	0.0247437	5.89525e-6
chr11	244040	244079	11756043	0	+	0.282051	[0,0.29]	chr11	897573	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD13	ENSG00000185627.18	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.26961	4.29796	5.32631	0.00229774	1.03299e-5	0.0210664	3.0965e-4
chr15	72349078	72349168	15369486	0	-	0.422222	(0.42,0.455]	chr15	1214437	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	109	2	4.25877	4.2977799999999995	4.33679	2.31906e-7	9.2626e-9	1.29516e-5	7.26845e-7
chrX	47228566	47228644	18687064	0	+	0.487179	(0.455,0.49]	chrX	1593348	1	CDS	CDS:EXON_MRNA:INTRON	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000462827.2:ENST00000520141.5:ENST00000462483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	3.79735	4.297755	4.79816	9.19204e-7	1.71652e-7	3.72813e-5	1.00318e-5
chr6	107646811	107646911	7318676	0	+	0.53	(0.49,0.53]	chr6	562499	106	INTRON	INTRON	SOBP	ENSG00000112320.12	ENST00000317357.10	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.26641	4.29774	6.32907	0.0190546	3.09658e-8	0.093872	2.04921e-6
chr2	128190830	128190929	2060520	0	+	0.515152	(0.49,0.53]	chr2	193397	12	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.94403	4.2976600000000005	5.65129	0.00122634	3.38975e-6	0.0130695	1.23071e-4
chr11	75572283	75572383	12023393	0	+	0.55	(0.53,0.59]	chr11	927027	3	UTR3	UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.92573	4.297545	4.66936	0.00103174	8.62301e-5	0.0121443	0.00160749
chr12	53515940	53516039	13339508	0	-	0.535354	(0.53,0.59]	chr12	1049176	40	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000551087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.92573	4.297545	4.66936	0.00103174	8.62301e-5	0.0121443	0.00160749
chr12	93641203	93641299	13473457	0	-	0.5625	(0.53,0.59]	chr12	1059444	5	EXON_PSEUDO	EXON_PSEUDO	RP11-887P2.3	ENSG00000186076.5	ENST00000548270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	3.92573	4.297545	4.66936	0.00103174	8.62301e-5	0.0121443	0.00160749
chr14	69885517	69885606	14688044	0	-	0.539326	(0.53,0.59]	chr14	1150336	3	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	3.92573	4.297545	4.66936	0.00103174	8.62301e-5	0.0121443	0.00160749
chr3	47057107	47057202	4158953	0	-	0.557895	(0.53,0.59]	chr3	347829	4	CDS	CDS:UTR3:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000445387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.92573	4.297545	4.66936	0.00103174	8.62301e-5	0.0121443	0.00160749
chr11	61311988	61312084	12404016	0	-	0.552083	(0.53,0.59]	chr11	960210	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	104	2	2.79953	4.2974049999999995	5.79528	1.1396e-5	2.61912e-6	3.08038e-4	9.89086e-5
chr19	14622155	14622242	17481475	0	-	0.528736	(0.49,0.53]	chr19	1464658	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRE3:ITGB1P1	ENSG00000131355.15:ENSG00000269378.1	ENST00000344373.8:ENST00000443157.6:ENST00000253673.6:ENST00000599900.5:ENST00000596032.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	38	2	2.72252	4.297215	5.87191	0.0161474	9.67449e-7	0.0860154	3.88631e-5
chr11	90283887	90283982	12059338	0	+	0.526316	(0.49,0.53]	chr11	929980	15	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	55	2	4.16626	4.29708	4.4279	0.00196987	5.42608e-7	0.0193972	2.37553e-5
chr5	177332201	177332269	6991043	0	-	0.676471	(0.59,1]	chr5	534719	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000504071.1:ENST00000515209.5:ENST00000514458.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.0542	4.296945	5.53969	0.00663549	1.29608e-4	0.0456243	0.00223885
chr1	72274898	72274985	286755	0	+	0.45977	(0.455,0.49]	chr1	30586	5	EXON_PSEUDO	EXON_PSEUDO	GDI2P2	ENSG00000233994.2	ENST00000445131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	2.50904	4.29692	6.0848	0.0310515	1.71103e-7	0.131262	8.87341e-6
chr18	35142210	35142307	16822736	0	+	0.381443	(0.36,0.39]	chr18	1387343	20	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.49441	4.296905	5.0994	7.81559e-4	4.68763e-5	0.00927662	0.00107286
chr18	9396433	9396511	16753295	0	+	0.435897	(0.42,0.455]	chr18	1381527	3	CDS	CDS:UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.36247	4.29687	6.23127	0.0462889	6.12952e-8	0.176878	3.67043e-6
chr11	308413	308474	11756391	0	+	0.622951	(0.59,1]	chr11	897724	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM2:RP11-326C3.17	ENSG00000185201.17:ENSG00000288681.1	ENST00000681810.1:ENST00000681914.1:ENST00000680081.1:ENST00000679962.1:ENST00000681900.1:ENST00000681276.1:ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000680619.1:ENST00000602569.2:ENST00000527146.1:ENST00000399815.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.4902	4.29683	5.10346	0.00130379	8.40506e-4	0.0142445	0.00981548
chr17	51171545	51171604	16266658	0	+	0.40678	(0.39,0.42]	chr17	1319624	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000393190.4:ENST00000570801.1:ENST00000573262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	4.16663	4.296725	4.42682	1.84729e-5	5.99745e-8	5.02409e-4	3.60573e-6
chr15	58599597	58599660	15310699	0	-	0.428571	(0.42,0.455]	chr15	1208282	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	3.37962	4.296595	5.21357	1.2947e-4	6.18673e-9	0.00242147	5.12571e-7
chr10	70214499	70214586	11560733	0	-	0.448276	(0.42,0.455]	chr10	879657	1	CDS	CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	4.1903	4.29653	4.40276	0.0017618	4.41719e-7	0.0180053	1.99209e-5
chr8	140530045	140530144	10132143	0	-	0.363636	(0.36,0.39]	chr8	760954	100	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.02397	4.296295	5.56862	0.00674398	4.90567e-6	0.0461258	1.526e-4
chr7	130666848	130666929	9065854	0	-	0.333333	(0.33,0.36]	chr7	692479	1	CDS	CDS:EXON_MRNA	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000330992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.97606	4.29624	5.61642	0.00871774	2.97369e-6	0.0558165	9.99199e-5
chr17	74440345	74440439	16350208	0	+	0.617021	(0.59,1]	chr17	1326483	6	CDS	CDS:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	GPRC5C	ENSG00000170412.18	ENST00000342648.9:ENST00000481232.2:ENST00000652232.1:ENST00000392627.7:ENST00000392628.7:ENST00000652294.1:ENST00000392629.3:ENST00000581590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.11672	4.295945	4.47517	0.0222273	0.00735659	0.105595	0.0491503
chr19	35250581	35250659	17303929	0	+	0.615385	(0.59,1]	chr19	1430655	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	4.11672	4.295945	4.47517	0.0222273	0.00735659	0.105595	0.0491503
chr20	1118773	1118873	17645164	0	+	0.64	(0.59,1]	chr20	1491496	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000381899.8:ENST00000479715.5:ENST00000246015.8:ENST00000335877.11:ENST00000478004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.11672	4.295945	4.47517	0.0222273	0.00735659	0.105595	0.0491503
chr3	123150233	123150298	3706967	0	+	0.707692	(0.59,1]	chr3	316849	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000467157.1:ENST00000485208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	25	2	4.11672	4.295945	4.47517	0.0222273	0.00735659	0.105595	0.0491503
chr8	53843174	53843270	9832402	0	-	0.645833	(0.59,1]	chr8	743904	8	UTR5	UTR5:EXON_MRNA	ATP6V1H	ENSG00000047249.18	ENST00000359530.7:ENST00000355221.7:ENST00000524164.5:ENST00000519588.1:ENST00000521335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.11672	4.295945	4.47517	0.0222273	0.00735659	0.105595	0.0491503
chr9	121180900	121180999	10835884	0	-	0.323232	(0.29,0.33]	chr9	820919	29	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	3.16962	4.29585	5.42208	2.42328e-5	5.31413e-6	5.68668e-4	1.7831e-4
chr1	180196840	180196937	582912	0	+	0.690722	(0.59,1]	chr1	60580	7	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5:ENST00000443059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.14483	4.29577	4.44671	0.0183207	0.00931497	0.0945306	0.0586162
chr1	211578338	211578425	1478574	0	-	0.632184	(0.59,1]	chr1	149196	5	CDS	CDS:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	4.14483	4.29577	4.44671	0.0183207	0.00931497	0.0945306	0.0586162
chr2	675569	675630	2475337	0	-	0.688525	(0.59,1]	chr2	224173	2	CDS	CDS:UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8:ENST00000432667.5:ENST00000355654.6:ENST00000477202.1:ENST00000405941.3:ENST00000418447.1:ENST00000461640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	25	2	4.14483	4.29577	4.44671	0.0183207	0.00931497	0.0945306	0.0586162
chr18	12325375	12325469	16762275	0	+	0.574468	(0.53,0.59]	chr18	1382538	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000590967.5:ENST00000591208.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.47419	4.29563	5.11707	8.75273e-4	1.35965e-4	0.0106963	0.00231202
chrX	49304859	49304940	18694345	0	+	0.54321	(0.53,0.59]	chrX	1594798	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE10	ENSG00000215274.5	ENST00000407599.3	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.47419	4.29563	5.11707	8.75273e-4	1.35965e-4	0.0106963	0.00231202
chr12	9755061	9755161	13200167	0	-	0.42	(0.39,0.42]	chr12	1034802	1	CDS	CDS:EXON_MRNA	CD69	ENSG00000110848.8	ENST00000228434.7:ENST00000536709.1:ENST00000416624.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	3.75753	4.295555	4.83358	2.04026e-4	1.20779e-7	0.00320361	7.40241e-6
chr16	16287789	16287862	15569392	0	+	0.438356	(0.42,0.455]	chr16	1233068	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000678148.1:ENST00000574157.5:ENST00000572932.1:ENST00000573635.1:ENST00000571167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.91097	4.295389999999999	4.67981	5.38444e-4	8.75299e-5	0.00744072	0.0016272
chr19	4668594	4668645	17433178	0	-	0.45098	(0.42,0.455]	chr19	1455355	1	CDS	CDS:EXON_MRNA	MYDGF	ENSG00000074842.8	ENST00000262947.8:ENST00000599630.1:ENST00000596031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.91097	4.295389999999999	4.67981	5.38444e-4	8.75299e-5	0.00744072	0.0016272
chr4	52716567	52716666	4829950	0	+	0.474747	(0.455,0.49]	chr4	398211	33	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC01618:DANCR	ENSG00000250302.3:ENSG00000226950.8	ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000675988.1:ENST00000676199.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	4.22752	4.295294999999999	4.36307	0.00218641	1.24055e-5	0.0208941	3.28918e-4
chr14	73211858	73211942	14395230	0	+	0.559524	(0.53,0.59]	chr14	1124554	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1:ENST00000555867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr15	92008234	92008334	15110137	0	+	0.54	(0.53,0.59]	chr15	1189138	663	INTRON	INTRON	SLCO3A1	ENSG00000176463.14	ENST00000318445.11:ENST00000553653.5:ENST00000424469.2:ENST00000555769.5:ENST00000556649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr16	2332648	2332732	15825977	0	-	0.547619	(0.53,0.59]	chr16	1262557	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABCA3:RP11-715J22.1	ENSG00000167972.14:ENSG00000243445.1	ENST00000382381.7:ENST00000301732.10:ENST00000563623.5:ENST00000468708.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr19	5221168	5221253	17435090	0	-	0.541176	(0.53,0.59]	chr19	1455702	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5:ENST00000592099.5:ENST00000588012.5:ENST00000262963.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr19	45524569	45524660	17354086	0	+	0.56044	(0.53,0.59]	chr19	1439984	1	CDS	CDS:UTR3:EXON_MRNA	VASP	ENSG00000125753.14	ENST00000245932.11:ENST00000586014.5:ENST00000588482.5:ENST00000588273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr3	183947416	183947510	4622030	0	-	0.531915	(0.53,0.59]	chr3	381540	2	CDS	CDS:UTR3:EXON_MRNA	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr4	14564949	14565049	5318346	0	-	0.56	(0.53,0.59]	chr4	428267	586	INTRON	INTRON	LINC00504	ENSG00000248360.7	ENST00000505089.6:ENST00000509654.5:ENST00000515031.5	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.82407	4.2951999999999995	4.76633	0.0179666	6.98999e-4	0.0918323	0.00846751
chr6	143136834	143136895	7445652	0	+	0.459016	(0.455,0.49]	chr6	569855	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.71798	4.294919999999999	4.87186	0.0202679	2.33781e-4	0.0984041	0.00385436
chrX	66162738	66162807	18717225	0	+	0.478261	(0.455,0.49]	chrX	1596922	2	UTR5	UTR5:EXON_MRNA	HEPH	ENSG00000089472.17	ENST00000519389.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.71798	4.294919999999999	4.87186	0.0202679	2.33781e-4	0.0984041	0.00385436
chr4	674276	674330	5275259	0	-	0.592593	(0.59,1]	chr4	424214	1	EXON_LNCRNA	EXON_LNCRNA	ATP5ME	ENSG00000169020.10	ENST00000505852.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	26	2	3.84557	4.294675	4.74378	0.0410704	0.00312942	0.163285	0.0264364
chr6	2948227	2948297	7570801	0	-	0.628571	(0.59,1]	chr6	577707	2	UTR3	UTR3:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	26	2	3.84557	4.294675	4.74378	0.0410704	0.00312942	0.163285	0.0264364
chrX	155026938	155027038	18918859	0	+	0.65	(0.59,1]	chrX	1612346	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	FUNDC2	ENSG00000165775.18	ENST00000475165.5:ENST00000369498.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	26	2	3.84557	4.294675	4.74378	0.0410704	0.00312942	0.163285	0.0264364
chrX	49553052	49553113	18694890	0	+	0.57377	(0.53,0.59]	chrX	1594947	2	CDS	CDS:EXON_MRNA:INTRON	GAGE12F:GAGE12E	ENSG00000236362.8:ENSG00000216649.4	ENST00000639028.1:ENST00000381698.4	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	3.30349	4.29452	5.28555	1.31944e-6	4.85075e-9	5.56872e-5	4.13068e-7
chr16	81615605	81615705	15771107	0	+	0.45	(0.42,0.455]	chr16	1255471	38	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.90921	4.29451	4.67981	0.0121657	5.38444e-4	0.0701019	0.00744072
chr21	34095689	34095787	18104973	0	+	0.540816	(0.53,0.59]	chr21	1534981	5	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	65	2	4.14645	4.294499999999999	4.44255	2.32261e-5	3.41603e-6	6.06413e-4	1.12474e-4
chr1	226365077	226365154	1533056	0	-	0.454545	(0.42,0.455]	chr1	153427	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1:ENST00000677815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	97	2	3.78713	4.294295	4.80146	9.02026e-6	2.2181e-9	2.78052e-4	2.11138e-7
chr2	177231633	177231727	3033066	0	-	0.457447	(0.455,0.49]	chr2	268539	9	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NFE2L2	ENSG00000116044.16	ENST00000458603.1:ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.3605	4.29422	5.22794	0.00147278	4.80556e-5	0.0157578	9.91058e-4
chr19	11100283	11100345	17229963	0	+	0.629032	(0.59,1]	chr19	1419544	2	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000560502.5:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	26	2	3.87333	4.2942149999999994	4.7151	0.0348991	0.00412279	0.141505	0.0325842
chr19	15123390	15123483	17484285	0	-	0.602151	(0.59,1]	chr19	1465085	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ILVBL	ENSG00000105135.16	ENST00000533086.5:ENST00000263383.8:ENST00000534378.5:ENST00000598709.1:ENST00000533148.5:ENST00000531635.1:ENST00000600984.5:ENST00000527093.5:ENST00000533747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	26	2	3.87333	4.2942149999999994	4.7151	0.0348991	0.00412279	0.141505	0.0325842
chr9	35700027	35700081	10639469	0	-	0.62963	(0.59,1]	chr9	804986	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	26	2	3.87333	4.2942149999999994	4.7151	0.0348991	0.00412279	0.141505	0.0325842
chr19	12260372	12260454	17236515	0	+	0.573171	(0.53,0.59]	chr19	1420532	4	EXON_PSEUDO	EXON_PSEUDO	CTD-2666L21.3	ENSG00000213293.4	ENST00000461223.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	42	2	2.65894	4.29389	5.92884	0.0193255	1.11987e-6	0.0943643	4.4003e-5
chr19	17568644	17568713	17254680	0	+	0.550725	(0.53,0.59]	chr19	1424450	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000601354.1:ENST00000597147.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.65894	4.29389	5.92884	0.0193255	1.11987e-6	0.0943643	4.4003e-5
chrX	23683670	23683705	18616044	0	+	0.542857	(0.53,0.59]	chrX	1589686	1	CDS	CDS:EXON_MRNA	PRDX4	ENSG00000123131.13	ENST00000379341.9:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.65894	4.29389	5.92884	0.0193255	1.11987e-6	0.0943643	4.4003e-5
chr6	32115263	32115358	7664386	0	-	0.410526	(0.39,0.42]	chr6	585967	1	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	XXbac-BPG300A18.16:TNXB:ATF6B	ENSG00000284829.1:ENSG00000168477.19:ENSG00000213676.13	ENST00000494022.1:ENST00000442721.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	30	2	3.19588	4.29388	5.39188	0.00321212	1.75441e-5	0.0280721	4.38078e-4
chr1	36339623	36339719	940150	0	-	0.354167	(0.33,0.36]	chr1	98983	1	UTR3	UTR3:EXON_MRNA	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.9015	4.29355	4.6856	3.92435e-4	9.11613e-5	0.00583618	0.00168187
chr14	100481274	100481370	14488797	0	+	0.34375	(0.33,0.36]	chr14	1132019	1	INTRON	INTRON	WDR25	ENSG00000176473.14	ENST00000555775.5:ENST00000554998.5:ENST00000402312.8:ENST00000335290.10:ENST00000554492.5:ENST00000557710.5:ENST00000542471.2:ENST00000555865.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	3.9015	4.29355	4.6856	3.92435e-4	9.11613e-5	0.00583618	0.00168187
chr1	244706378	244706477	804415	0	+	0.555556	(0.53,0.59]	chr1	80056	7	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.55001	4.29353	5.03705	6.11776e-4	0.00020199200000000001	0.00818575	0.00317801
chr15	42231191	42231260	15239044	0	-	0.550725	(0.53,0.59]	chr15	1200207	1	CDS	CDS:EXON_MRNA:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000566014.1:ENST00000562946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.39416	4.29352	5.19288	0.00126006	9.22873e-5	0.013837	0.0016906
chr7	65976103	65976193	8834534	0	-	0.466667	(0.455,0.49]	chr7	674593	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.30139	4.293465	6.28554	0.0530131	3.54381e-8	0.195536	2.29553e-6
chr12	56132420	56132508	12898285	0	+	0.522727	(0.49,0.53]	chr12	1004232	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	4.18697	4.293445	4.39992	4.38216e-7	8.12059e-8	2.20292e-5	4.6844e-6
chr9	94460754	94460850	10367804	0	+	0.25	[0,0.29]	chr9	780591	15	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.2461700000000002	4.293290000000001	5.34041	6.06567e-4	1.38223e-5	0.00817698	3.58914e-4
chr12	56275066	56275131	13349875	0	-	0.569231	(0.53,0.59]	chr12	1051015	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000546585.1:ENST00000548849.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.46349	4.2932500000000005	5.12301	9.2216e-4	1.2852e-4	0.0104432	0.00241206
chr19	48795334	48795425	17603660	0	-	0.582418	(0.53,0.59]	chr19	1483207	4	UTR3	UTR3:EXON_MRNA	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.46349	4.2932500000000005	5.12301	9.2216e-4	1.2852e-4	0.0104432	0.00241206
chr2	135724106	135724192	2082950	0	+	0.546512	(0.53,0.59]	chr2	195394	3	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.46349	4.2932500000000005	5.12301	9.2216e-4	1.2852e-4	0.0104432	0.00241206
chr1	150145165	150145247	465861	0	+	0.378049	(0.36,0.39]	chr1	46931	4	UTR3	UTR3:EXON_MRNA	VPS45	ENSG00000136631.15	ENST00000535106.5:ENST00000369128.9:ENST00000611412.4:ENST00000644510.2:ENST00000491789.2:ENST00000642919.1:ENST00000644526.1:ENST00000477558.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.16143	4.293229999999999	4.42503	0.00486719	0.00133228	0.0366328	0.0144372
chr2	196764562	196764662	3101324	0	-	0.39	(0.36,0.39]	chr2	273967	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000481098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.16143	4.293229999999999	4.42503	0.00486719	0.00133228	0.0366328	0.0144372
chr5	151810109	151810208	6299827	0	+	0.383838	(0.36,0.39]	chr5	491960	47	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.16143	4.293229999999999	4.42503	0.00486719	0.00133228	0.0366328	0.0144372
chr14	81479675	81479740	14732760	0	-	0.476923	(0.455,0.49]	chr14	1154147	2	CDS	CDS:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000554293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr17	2684246	2684344	16086766	0	+	0.459184	(0.455,0.49]	chr17	1293760	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000675390.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr2	127955254	127955344	2869696	0	-	0.477778	(0.455,0.49]	chr2	256598	4	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr20	24970283	24970371	17931320	0	-	0.488636	(0.455,0.49]	chr20	1517967	2	CDS	CDS:EXON_MRNA	APMAP	ENSG00000101474.12	ENST00000217456.3:ENST00000451442.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr3	44359515	44359611	3442436	0	+	0.46875	(0.455,0.49]	chr3	299535	14	UTR3	UTR3:EXON_MRNA:INTRON	TCAIM	ENSG00000179152.20	ENST00000417237.5:ENST00000383746.7:ENST00000494638.5:ENST00000396078.7:ENST00000462230.5:ENST00000412611.6:ENST00000444602.2:ENST00000342649.9:ENST00000431657.5:ENST00000417768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr3	113794871	113794932	3675963	0	+	0.47541	(0.455,0.49]	chr3	314465	1	CDS	CDS:UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr4	57030301	57030399	4851289	0	+	0.459184	(0.455,0.49]	chr4	399863	2	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr7	27526116	27526213	8739201	0	-	0.474227	(0.455,0.49]	chr7	667102	8	UTR3	UTR3:EXON_MRNA	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.81275	4.292965	4.77318	0.0138827	4.7888e-4	0.0760883	0.00628636
chr11	119023490	119023582	12161716	0	+	0.445652	(0.42,0.455]	chr11	937598	2	UTR3	UTR3:EXON_MRNA:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000533012.1:ENST00000533149.1:ENST00000524797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr14	21750366	21750464	14173873	0	+	0.438776	(0.42,0.455]	chr14	1109831	2	EXON_PSEUDO	EXON_PSEUDO	RPL4P1	ENSG00000240954.1	ENST00000496596.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr15	68188327	68188426	14995003	0	+	0.454545	(0.42,0.455]	chr15	1178737	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr15	75639348	75639436	15379432	0	-	0.420455	(0.42,0.455]	chr15	1216082	4	UTR3	UTR3:EXON_MRNA	IMP3	ENSG00000177971.9	ENST00000314852.2:ENST00000403490.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr4	105485487	105485586	5026466	0	+	0.454545	(0.42,0.455]	chr4	409127	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr5	43555829	43555928	6561784	0	-	0.444444	(0.42,0.455]	chr5	508586	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PAIP1	ENSG00000172239.14	ENST00000306846.8:ENST00000436644.6:ENST00000338972.8:ENST00000514514.5:ENST00000504639.5:ENST00000511321.5:ENST00000508537.1:ENST00000504075.1:ENST00000515338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr9	33110737	33110834	10631558	0	-	0.43299	(0.42,0.455]	chr9	803436	2	UTR3	UTR3:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.05954	4.29274	4.52594	0.00617886	0.00144145	0.0439741	0.0147046
chr5	177303891	177303985	6406797	0	+	0.808511	(0.59,1]	chr5	498037	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000502670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	27	2	3.71566	4.292715	4.86977	0.0487443	0.00246014	0.175495	0.0230058
chr7	1016037	1016137	8643825	0	-	0.66	(0.59,1]	chr7	660520	55	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	27	2	3.71566	4.292715	4.86977	0.0487443	0.00246014	0.175495	0.0230058
chr1	19081437	19081527	875649	0	-	0.566667	(0.53,0.59]	chr1	89887	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375225.7:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.11779	4.292705	5.46762	5.11883e-4	1.97761e-5	0.00664583	5.29643e-4
chrX	70963128	70963210	18729619	0	+	0.402439	(0.39,0.42]	chrX	1598079	3	EXON_PSEUDO	EXON_PSEUDO	RPS23P8	ENSG00000230629.2	ENST00000429775.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	325	2	4.2417299999999996	4.292674999999999	4.34362	1.06593e-11	1e-12	1.841e-9	2.46312e-10
chr4	165341846	165341946	5206955	0	+	0.34	(0.33,0.36]	chr4	420284	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	17	351	2	3.49842	4.2925699999999996	5.08672	1.09919e-7	1e-12	6.83715e-6	2.25522e-10
chr7	103545123	103545196	8963715	0	-	0.410959	(0.39,0.42]	chr7	686176	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1:ENST00000681199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	4.25375	4.2925249999999995	4.3313	0.00209984	1.03195e-5	0.0204266	2.84226e-4
chr2	65018611	65018679	1853337	0	+	0.544118	(0.53,0.59]	chr2	175847	2	CDS	CDS:EXON_MRNA	SLC1A4	ENSG00000115902.11	ENST00000531327.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.1234	4.29252	5.46164	0.00390623	2.11519e-5	0.0322851	5.06522e-4
chr20	63890887	63890981	17866834	0	+	0.553191	(0.53,0.59]	chr20	1511295	10	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	3.1234	4.29252	5.46164	0.00390623	2.11519e-5	0.0322851	5.06522e-4
chr8	47912409	47912485	9816930	0	-	0.552632	(0.53,0.59]	chr8	742803	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.1234	4.29252	5.46164	0.00390623	2.11519e-5	0.0322851	5.06522e-4
chr6	27892698	27892756	7649678	0	-	0.396552	(0.39,0.42]	chr6	582845	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H3C12:H2AC17	ENSG00000197153.5:ENSG00000278677.2	ENST00000479986.1:ENST00000359611.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	248	2	3.77147	4.292434999999999	4.8134	5.59137e-9	1e-12	5.10886e-7	2.25522e-10
chrX	65729437	65729528	18716252	0	+	0.538462	(0.53,0.59]	chrX	1596835	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	4.13142	4.29238	4.45334	3.13332e-6	8.11888e-7	1.15746e-4	3.35153e-5
chr19	44874403	44874478	17349338	0	+	0.586667	(0.53,0.59]	chr19	1439147	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1:ENST00000587386.1:ENST00000585601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	84	2	3.889	4.292225	4.69545	4.69357e-6	5.62788e-7	1.625e-4	2.45035e-5
chr16	85400137	85400237	15795319	0	+	0.52	(0.49,0.53]	chr16	1256986	408	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.69037	4.29221	4.89405	0.0226513	2.57983e-4	0.10505	0.00419998
chrX	152767270	152767363	19272361	0	-	0.526882	(0.49,0.53]	chrX	1637049	6	CDS	CDS:EXON_MRNA	MAGEA6	ENSG00000197172.10	ENST00000329342.9:ENST00000616035.4:ENST00000457643.1:ENST00000412733.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.69037	4.29221	4.89405	0.0226513	2.57983e-4	0.10505	0.00419998
chr19	3551007	3551107	17427630	0	-	0.58	(0.53,0.59]	chr19	1454116	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD12	ENSG00000161091.14	ENST00000355415.7:ENST00000588918.5:ENST00000389395.7:ENST00000589995.1:ENST00000585814.1:ENST00000592652.1:ENST00000591878.1:ENST00000588626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.37399	4.29199	6.20999	0.0126178	1.51461e-7	0.0717599	8.00634e-6
chrX	49323742	49323802	18694518	0	+	0.533333	(0.53,0.59]	chrX	1594827	1	CDS	CDS:EXON_MRNA	GAGE12J	ENSG00000224659.2	ENST00000442437.2	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.69381	4.291815	5.88982	2.03527e-4	1.39814e-6	0.00320125	5.82056e-5
chr9	33441251	33441343	10632539	0	-	0.380435	(0.36,0.39]	chr9	803588	2	UTR3	UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.59573	4.29158	4.98743	8.82225e-5	3.19976e-5	0.00178337	7.1032e-4
chr12	49999675	49999736	13327288	0	-	0.491803	(0.49,0.53]	chr12	1046353	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1:ENST00000547061.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000548158.1:ENST00000550149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.73494	4.29119	4.84744	0.0189345	3.70203e-4	0.0934721	0.00515475
chr22	19443077	19443176	18433514	0	-	0.525253	(0.49,0.53]	chr22	1570857	15	UTR3	UTR3:EXON_MRNA:INTRON	C22orf39:HIRA	ENSG00000242259.9:ENSG00000100084.14	ENST00000509549.5:ENST00000452818.1:ENST00000399562.9:ENST00000399568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.73494	4.29119	4.84744	0.0189345	3.70203e-4	0.0934721	0.00515475
chr3	38253489	38253589	3420121	0	+	0.51	(0.49,0.53]	chr3	297237	7	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.73494	4.29119	4.84744	0.0189345	3.70203e-4	0.0934721	0.00515475
chr11	11352238	11352335	12274146	0	-	0.443299	(0.42,0.455]	chr11	949139	3	CDS	CDS:EXON_MRNA:INTRON	GALNT18:CSNK2A3	ENSG00000110328.6:ENSG00000254598.3	ENST00000227756.5:ENST00000528848.3	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.03383	4.290875	4.54792	9.66045e-4	4.24324e-5	0.0115185	8.98949e-4
chr17	49176148	49176247	16257176	0	+	0.636364	(0.59,1]	chr17	1317762	66	UTR3	UTR3:EXON_MRNA	B4GALNT2	ENSG00000167080.9	ENST00000393354.7	protein_coding	protein_coding	protein_coding	protein_coding	18	832	2	3.31012	4.29055	5.27098	1.02271e-6	1e-12	4.51049e-5	2.25522e-10
chr7	74196835	74196931	8334079	0	+	0.375	(0.36,0.39]	chr7	634971	17	UTR3	UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	90	2	3.48025	4.290369999999999	5.10049	6.65622e-7	1.14212e-8	2.82958e-5	9.5119e-7
chr7	100626762	100626832	8952221	0	-	0.571429	(0.53,0.59]	chr7	684158	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000461176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	76	2	4.02196	4.29028	4.5586	0.00161229	1.79284e-7	0.0169168	9.26652e-6
chr11	45965412	45965510	12379127	0	-	0.561224	(0.53,0.59]	chr11	955643	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHF21A	ENSG00000135365.16	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000418153.6:ENST00000527753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	3.80806	4.29014	4.77222	6.67251e-4	1.65022e-4	0.00867533	0.00269147
chr2	47475024	47475106	1785237	0	+	0.451219	(0.42,0.455]	chr2	172511	1	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.06293	4.28984	5.51675	0.00492128	5.14372e-6	0.0366648	1.73456e-4
chr16	56832294	56832388	15680440	0	+	0.5	(0.49,0.53]	chr16	1246649	1	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5:ENST00000563437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	3.58926	4.2898	4.99034	1.6002e-4	3.32125e-5	0.00286408	7.33555e-4
chr19	40367693	40367786	17328623	0	+	0.645161	(0.59,1]	chr19	1435551	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PLD3	ENSG00000105223.20	ENST00000392032.6:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000409281.5:ENST00000359274.5:ENST00000485448.1:ENST00000492243.1:ENST00000599353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	241	2	3.82158	4.28931	4.75704	2.09567e-5	3.93706e-9	5.57049e-4	3.46161e-7
chr1	151403613	151403712	1292980	0	-	0.40404	(0.39,0.42]	chr1	129234	10	UTR3	UTR3:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.93975	4.289289999999999	4.63883	0.0105893	5.68159e-4	0.0644466	0.0077844
chr11	18407132	18407181	11831563	0	+	0.408163	(0.39,0.42]	chr11	906044	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	162	2	4.04136	4.28886	4.53636	4.32511e-9	9.87921e-11	3.7658e-7	1.48774e-8
chr12	120465706	120465787	13580815	0	-	0.45679	(0.455,0.49]	chr12	1069071	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.93794	4.28886	4.63978	6.94032e-4	7.43966e-5	0.00876781	0.00142165
chrX	48462075	48462144	19062773	0	-	0.449275	(0.42,0.455]	chrX	1620401	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	107	2	3.81811	4.28872	4.75933	7.6394e-7	3.28355e-9	3.52166e-5	2.95937e-7
chr13	28723590	28723676	13944898	0	-	0.430233	(0.42,0.455]	chr13	1094503	2	EXON_PSEUDO	EXON_PSEUDO	CYP51A1P2	ENSG00000233588.1	ENST00000419457.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	3.77666	4.28865	4.80064	3.0479e-4	1.85215e-4	0.00472028	0.00296795
chr9	109090921	109090999	10788495	0	-	0.525641	(0.49,0.53]	chr9	816883	1	CDS	CDS:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	3.33099	4.28839	5.24579	1.59567e-4	4.073e-5	0.00263091	9.64741e-4
chr10	80247590	80247683	11593729	0	-	0.516129	(0.49,0.53]	chr10	883127	5	EXON_PSEUDO	EXON_PSEUDO	EIF5AP4	ENSG00000234743.1	ENST00000441206.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.8967	4.288209999999999	4.67972	0.0128791	6.94757e-4	0.0725185	0.00876781
chr20	38012471	38012567	17962673	0	-	0.5	(0.49,0.53]	chr20	1522288	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1:ENST00000487362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.8967	4.288209999999999	4.67972	0.0128791	6.94757e-4	0.0725185	0.00876781
chr1	952411	952505	825592	0	-	0.648936	(0.59,1]	chr1	81734	1	CDS	CDS:EXON_MRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.78188	4.28819	4.7945	0.0031766	3.33896e-4	0.0279054	0.00472923
chr13	79552613	79552712	13800340	0	+	0.323232	(0.29,0.33]	chr13	1085549	2	UTR3	UTR3:EXON_MRNA	NDFIP2	ENSG00000102471.14	ENST00000612570.4:ENST00000218652.11:ENST00000650134.1:ENST00000487865.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	4.12067	4.288005	4.45534	0.00110984	2.40819e-5	0.0127344	5.6648e-4
chr11	74965843	74965925	12021443	0	+	0.426829	(0.42,0.455]	chr11	926794	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.37329	4.287985	5.20268	0.00136107	3.59669e-5	0.0141115	8.71318e-4
chr1	167548001	167548061	1347898	0	-	0.45	(0.42,0.455]	chr1	138005	1	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.99666	4.287845	5.57903	0.00104775	2.07715e-10	0.0123035	2.59928e-8
chr1	44221557	44221640	969815	0	-	0.481928	(0.455,0.49]	chr1	102352	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	4.0204	4.28758	4.55476	0.00736097	1.27404e-6	0.0490627	4.90986e-5
chr11	82849913	82849992	12499354	0	-	0.455696	(0.455,0.49]	chr11	971452	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	4.0204	4.28758	4.55476	0.00736097	1.27404e-6	0.0490627	4.90986e-5
chr1	30873210	30873310	915901	0	-	0.53	(0.49,0.53]	chr1	95915	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.94177	4.287575	4.63338	0.0104929	9.56909e-4	0.063428	0.010724
chr14	39108524	39108615	14242955	0	+	0.516484	(0.49,0.53]	chr14	1114611	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP4	ENSG00000258591.2	ENST00000556877.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.94177	4.287575	4.63338	0.0104929	9.56909e-4	0.063428	0.010724
chr5	856177	856276	6421533	0	-	0.494949	(0.49,0.53]	chr5	500257	52	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	19	2	3.94177	4.287575	4.63338	0.0104929	9.56909e-4	0.063428	0.010724
chrX	103676160	103676260	19155327	0	-	0.44	(0.42,0.455]	chrX	1629339	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	3.24412	4.28737	5.33062	1.33004e-5	1.41327e-9	3.48736e-4	1.53907e-7
chr12	8347135	8347234	12721698	0	+	0.40404	(0.39,0.42]	chr12	988382	52	INTRON	INTRON	RP11-113C12.4	ENSG00000256552.2	ENST00000537764.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	17	2	4.14886	4.28735	4.42584	0.00415881	0.00199429	0.0325842	0.0189001
chr16	46663072	46663162	15927148	0	-	0.411111	(0.39,0.42]	chr16	1277415	2	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000562420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.14886	4.28735	4.42584	0.00415881	0.00199429	0.0325842	0.0189001
chr18	53109460	53109560	16886342	0	+	0.41	(0.39,0.42]	chr18	1390254	429	INTRON	INTRON	DCC	ENSG00000187323.12	ENST00000442544.7:ENST00000412726.5:ENST00000304775.12:ENST00000581580.5:ENST00000578949.1:ENST00000580146.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.14886	4.28735	4.42584	0.00415881	0.00199429	0.0325842	0.0189001
chr2	64633479	64633577	2704976	0	-	0.397959	(0.39,0.42]	chr2	241251	20	UTR3	UTR3:EXON_MRNA	SERTAD2	ENSG00000179833.4	ENST00000313349.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.14886	4.28735	4.42584	0.00415881	0.00199429	0.0325842	0.0189001
chr6	150209846	150209946	7483636	0	+	0.41	(0.39,0.42]	chr6	571936	453	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.14886	4.28735	4.42584	0.00415881	0.00199429	0.0325842	0.0189001
chr20	44500295	44500395	17981997	0	-	0.58	(0.53,0.59]	chr20	1523365	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	3.66389	4.287225	4.91056	2.13854e-5	1.08461e-7	5.67072e-4	5.98453e-6
chr1	154206884	154206978	1302803	0	-	0.425532	(0.42,0.455]	chr1	131189	3	UTR3	UTR3:EXON_MRNA	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.59462	4.28717	5.97972	0.0062772	4.13864e-7	0.0445415	1.88179e-5
chr3	184150069	184150160	3947926	0	+	0.549451	(0.53,0.59]	chr3	331911	5	EXON_PSEUDO	EXON_PSEUDO	RP11-778D9.4	ENSG00000228205.1	ENST00000433853.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.30943	4.28717	5.26491	0.0018255	6.31437e-5	0.0183913	0.00124286
chr7	111055344	111055444	9002440	0	-	0.54	(0.53,0.59]	chr7	688402	914	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	4.13569	4.28716	4.43863	0.00254763	2.50241e-5	0.0233955	5.82427e-4
chr1	84506010	84506091	1130809	0	-	0.580247	(0.53,0.59]	chr1	112616	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	56	2	2.98881	4.2870550000000005	5.5853	2.35204e-4	9.83355e-6	0.00356397	2.98194e-4
chrX	135033272	135033363	18865058	0	+	0.56044	(0.53,0.59]	chrX	1607588	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	3.58031	4.287039999999999	4.99377	3.64147e-5	5.58399e-8	8.79008e-4	3.38574e-6
chr15	27351488	27351587	14836051	0	+	0.444444	(0.42,0.455]	chr15	1164236	12	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5:ENST00000554696.5:ENST00000333743.10	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.46169	4.286935	5.11218	0.03884	6.01815e-5	0.149227	0.00130886
chr2	47800282	47800382	1788204	0	+	0.45	(0.42,0.455]	chr2	172666	14	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.52659	4.286695	5.0468	6.87022e-4	1.33918e-4	0.00876781	0.00229039
chr8	47157397	47157490	9311231	0	+	0.419355	(0.39,0.42]	chr8	713302	4	EXON_PSEUDO	EXON_PSEUDO	RPL10AP2	ENSG00000188873.4	ENST00000479243.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	2.70591	4.286685	5.86746	0.0185716	7.74696e-7	0.0932453	3.2172e-5
chr1	121116765	121116861	1259533	0	-	0.458333	(0.455,0.49]	chr1	123387	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	H2BP1	ENSG00000223345.3	ENST00000430394.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	32	2	3.12843	4.286625	5.44482	0.00392855	1.36044e-5	0.0322851	3.54469e-4
chr11	126264375	126264457	12645149	0	-	0.463415	(0.455,0.49]	chr11	981832	1	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000532268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	3.12843	4.286625	5.44482	0.00392855	1.36044e-5	0.0322851	3.54469e-4
chr17	28561490	28561559	16485780	0	-	0.57971	(0.53,0.59]	chr17	1347709	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000577620.5:ENST00000584080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	3.3733	4.286065	5.19883	0.0529193	8.7034e-5	0.18423900000000001	0.00177086
chr17	72557424	72557524	16668417	0	-	0.55	(0.53,0.59]	chr17	1371647	230	INTRON	INTRON	LINC00511	ENSG00000227036.8	ENST00000648631.1:ENST00000648248.1:ENST00000650419.1:ENST00000581801.6:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000649793.2:ENST00000650131.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	24	2	3.3733	4.286065	5.19883	0.0529193	8.7034e-5	0.18423900000000001	0.00177086
chr2	219225070	219225141	3191340	0	-	0.492958	(0.49,0.53]	chr2	280887	1	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000431715.5:ENST00000436856.5:ENST00000457841.5:ENST00000428226.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	3.49143	4.28602	5.08061	1.00361e-4	6.13943e-5	0.00196575	0.00122382
chr9	33921872	33921962	10633420	0	-	0.5	(0.49,0.53]	chr9	803789	3	UTR3	UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.49143	4.28602	5.08061	1.00361e-4	6.13943e-5	0.00196575	0.00122382
chr12	49129620	49129671	13323988	0	-	0.666667	(0.59,1]	chr12	1045753	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000549870.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	143	2	3.4558	4.285995	5.11619	1.35447e-4	2.04912e-7	0.00231202	1.16117e-5
chr2	111429308	111429408	2842695	0	-	0.44	(0.42,0.455]	chr2	253594	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR4435-2HG:RP11-803D5.5	ENSG00000172965.17:ENSG00000285016.1	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000603827.1:ENST00000673894.1:ENST00000442293.5:ENST00000644013.1	lncRNA	lncRNA	lncRNA	lncRNA	2	44	2	3.65978	4.285955	4.91213	1.75074e-4	2.09396e-5	0.00306313	5.04211e-4
chr1	180190432	180190506	582846	0	+	0.608108	(0.59,1]	chr1	60568	1	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.28861	4.285725	5.28284	0.0028753	4.04404e-4	0.0256141	0.00550292
chr12	69597637	69597701	12943533	0	+	0.421875	(0.42,0.455]	chr12	1009002	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	3.79103	4.285625	4.78022	8.61353e-6	1.92868e-7	2.43348e-4	1.1037e-5
chr11	118339840	118339906	12624421	0	-	0.560606	(0.53,0.59]	chr11	979312	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD3D	ENSG00000167286.10	ENST00000300692.9:ENST00000534687.5:ENST00000529594.5:ENST00000392884.2:ENST00000526561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.61294	4.285595	4.95825	0.0310038	2.87508e-4	0.130016	0.00457439
chr9	61854476	61854564	10271579	0	+	0.568182	(0.53,0.59]	chr9	773201	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM27C	ENSG00000231527.7	ENST00000651393.1:ENST00000653087.1:ENST00000377542.3:ENST00000660875.1:ENST00000670686.1	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	3.61294	4.285595	4.95825	0.0310038	2.87508e-4	0.130016	0.00457439
chr1	1043537	1043634	2289	0	+	0.71134	(0.59,1]	chr1	493	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.5215	4.285575	6.04965	0.032241	9.85057e-6	0.135671	2.72926e-4
chr1	21887214	21887274	891358	0	-	0.566667	(0.53,0.59]	chr1	92581	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000412328.5:ENST00000374673.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.515	4.285545	6.05609	0.0292633	4.62627e-7	0.129773	2.06661e-5
chr19	12810316	12810404	17237448	0	+	0.556818	(0.53,0.59]	chr19	1420811	1	CDS	CDS:UTR3:EXON_MRNA	THSD8:RNASEH2A	ENSG00000284491.3:ENSG00000104889.7	ENST00000639767.2:ENST00000221486.6:ENST00000646769.1:ENST00000593017.2:ENST00000643757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.61856	4.285445	4.95233	0.0303021	3.02711e-4	0.129773	0.00439897
chr8	22416141	22416210	9224980	0	+	0.565217	(0.53,0.59]	chr8	705693	2	CDS	CDS:EXON_MRNA	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000517370.1:ENST00000518348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.61856	4.285445	4.95233	0.0303021	3.02711e-4	0.129773	0.00439897
chr5	138348838	138348937	6243785	0	+	0.535354	(0.53,0.59]	chr5	486462	20	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.2308500000000002	4.285165	5.33948	2.81517e-4	4.08763e-5	0.00415519	9.64741e-4
chrX	78117311	78117363	18747057	0	+	0.480769	(0.455,0.49]	chrX	1599825	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	205	2	3.92225	4.28512	4.64799	1.19744e-8	8.95573e-12	9.91331e-7	1.57723e-9
chr6	2889962	2890062	7570641	0	-	0.42	(0.39,0.42]	chr6	577661	28	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	4.16663	4.28491	4.40319	1.84729e-5	3.72195e-6	5.02409e-4	1.21063e-4
chr1	166277301	166277400	1343601	0	-	0.545455	(0.53,0.59]	chr1	137704	18	EXON_PSEUDO	EXON_PSEUDO	RP11-9L18.2	ENSG00000215835.2	ENST00000400979.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.61133	4.28479	4.95825	4.55298e-4	2.87508e-4	0.00608573	0.00457439
chr17	1651174	1651242	16401267	0	-	0.544118	(0.53,0.59]	chr17	1334829	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.61133	4.28479	4.95825	4.55298e-4	2.87508e-4	0.00608573	0.00457439
chr5	139477421	139477515	6867222	0	-	0.574468	(0.53,0.59]	chr5	525692	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000652293.1:ENST00000651565.1:ENST00000652640.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000502825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.61133	4.28479	4.95825	4.55298e-4	2.87508e-4	0.00608573	0.00457439
chr12	56136818	56136893	12898342	0	+	0.506667	(0.49,0.53]	chr12	1004264	2	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.69746	4.284685	5.87191	0.00380414	9.67449e-7	0.0317723	3.88631e-5
chr5	163443703	163443796	6343428	0	+	0.387097	(0.36,0.39]	chr5	494014	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000509143.1:ENST00000509425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	218	2	4.12058	4.28465	4.44872	8.41577e-9	1.8594e-12	7.31513e-7	3.93159e-10
chr6	27893562	27893652	7105350	0	+	0.522222	(0.49,0.53]	chr6	543493	1	CDS	CDS:EXON_MRNA	H2BC17	ENSG00000274641.2	ENST00000616182.2	protein_coding	protein_coding	protein_coding	protein_coding	10	211	2	4.08195	4.28463	4.48731	3.30832e-9	4.61917e-11	2.98015e-7	7.51418e-9
chr1	11965536	11965593	45404	0	+	0.631579	(0.59,1]	chr1	5781	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000470133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.69477	4.2844750000000005	5.87418	0.020208	2.5071e-5	0.0978331	5.82734e-4
chr1	7984863	7984954	30739	0	+	0.461538	(0.455,0.49]	chr1	3616	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000377488.5:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.46389	4.28421	5.10453	9.14164e-4	1.5372e-8	0.0110519	1.1222e-6
chr7	130202531	130202597	9063517	0	-	0.469697	(0.455,0.49]	chr7	692195	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000471985.4	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	3.61387	4.28398	4.95409	2.88949e-5	5.5347e-8	7.23839e-4	3.37102e-6
chr13	50536157	50536257	13737315	0	+	0.37	(0.36,0.39]	chr13	1082220	24	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.98025	4.28386	4.58747	0.00881716	6.55819e-4	0.0562439	0.00860229
chr19	57200528	57200627	17405143	0	+	0.363636	(0.36,0.39]	chr19	1449996	57	INTRON	INTRON	ZNF264	ENSG00000083844.10	ENST00000263095.10:ENST00000597447.5:ENST00000536056.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.98025	4.28386	4.58747	0.00881716	6.55819e-4	0.0562439	0.00860229
chr2	239914289	239914389	3244891	0	-	0.37	(0.36,0.39]	chr2	285963	9	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.98025	4.28386	4.58747	0.00881716	6.55819e-4	0.0562439	0.00860229
chr19	48921879	48921932	17367843	0	+	0.679245	(0.59,1]	chr19	1442154	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.34171	4.2836	5.22549	0.00234977	5.13843e-4	0.0222173	0.00665221
chr1	21855849	21855912	890994	0	-	0.698413	(0.59,1]	chr1	92410	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.04286	4.283475	6.52409	0.0108394	6.1879e-7	0.0643837	2.65084e-5
chr1	53819024	53819079	1026091	0	-	0.345455	(0.33,0.36]	chr1	106419	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	3.34893	4.283405	5.21788	2.22813e-4	4.3663e-9	0.00370775	3.79596e-7
chr1	150967134	150967202	1291382	0	-	0.455882	(0.455,0.49]	chr1	128682	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000559660.1:ENST00000558062.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	166	2	4.17639	4.283345	4.3903	3.41835e-8	1.37367e-10	2.46038e-6	1.79629e-8
chr3	9938018	9938064	3301003	0	+	0.630435	(0.59,1]	chr3	290316	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-1020A11.3:CRELD1	ENSG00000288550.2:ENSG00000163703.20	ENST00000682122.1:ENST00000683484.1:ENST00000683061.1:ENST00000681970.1:ENST00000683279.1:ENST00000684493.1:ENST00000673935.2:ENST00000683239.1:ENST00000673737.2:ENST00000682403.1:ENST00000683232.1:ENST00000683970.1:ENST00000683316.1:ENST00000683547.1:ENST00000683083.1:ENST00000383811.8:ENST00000452070.6:ENST00000682798.1:ENST00000467713.6:ENST00000683888.1:ENST00000683189.1:ENST00000684181.1:ENST00000674057.1:ENST00000682642.1:ENST00000682120.1:ENST00000683603.1:ENST00000684291.1:ENST00000683127.1:ENST00000684648.1:ENST00000465716.2:ENST00000674067.2:ENST00000682907.1:ENST00000682906.1:ENST00000683891.1:ENST00000682318.1:ENST00000682200.1:ENST00000684629.1:ENST00000684243.1:ENST00000326434.9:ENST00000683835.1:ENST00000682783.1:ENST00000682790.1:ENST00000682355.1:ENST00000682570.1:ENST00000684613.1:ENST00000683601.1:ENST00000682397.1:ENST00000683301.1:ENST00000682884.1:ENST00000683507.1:ENST00000683982.1:ENST00000683921.1:ENST00000684212.1:ENST00000682929.1:ENST00000684526.1:ENST00000673677.2:ENST00000684318.1:ENST00000684601.1:ENST00000397170.8:ENST00000683849.1:ENST00000682771.1:ENST00000673635.2:ENST00000684532.1:ENST00000414117.6:ENST00000683736.1:ENST00000682866.1:ENST00000683122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.93526	4.28316	4.63106	0.00537945	1.599e-4	0.0406564	0.00263454
chr5	10263223	10263314	5874654	0	+	0.538462	(0.53,0.59]	chr5	461887	2	CDS	CDS:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000515676.5:ENST00000506600.1:ENST00000511995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	156	2	4.20024	4.28303	4.36582	4.7401e-7	1.37897e-9	2.35621e-5	1.39691e-7
chr16	69153583	69153680	15721722	0	+	0.474227	(0.455,0.49]	chr16	1251835	1	CDS	CDS:EXON_MRNA	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.08961	4.2828	5.47599	0.00445157	7.64978e-6	0.0340751	2.4151e-4
chr17	68043187	68043275	16333812	0	+	0.454545	(0.42,0.455]	chr17	1325127	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	169	2	4.22173	4.282484999999999	4.34324	3.16136e-7	6.56019e-11	1.68021e-5	9.34557e-9
chr14	49585998	49586049	14613984	0	-	0.490196	(0.49,0.53]	chr14	1144056	2	CDS	CDS:EXON_MRNA	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2:ENST00000557519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	274	2	4.05799	4.282425	4.50686	2.01555e-10	5.2694e-11	2.80661e-8	7.69204e-9
chr5	134720997	134721090	6230812	0	+	0.387097	(0.36,0.39]	chr5	485273	1	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.24194	4.2822949999999995	4.32265	0.00276729	6.3224e-6	0.0247437	1.88366e-4
chr8	80644751	80644844	9911126	0	-	0.387097	(0.36,0.39]	chr8	748607	13	INTRON	INTRON	ZNF704	ENSG00000164684.13	ENST00000327835.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.24194	4.2822949999999995	4.32265	0.00276729	6.3224e-6	0.0247437	1.88366e-4
chr1	53806424	53806517	1025960	0	-	0.451613	(0.42,0.455]	chr1	106400	1	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.95538	4.28217	4.60896	6.68846e-5	8.72604e-7	0.00142352	3.55816e-5
chr1	155661523	155661623	1310563	0	-	0.38	(0.36,0.39]	chr1	132522	1	SS3_PROX	SS3_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.24194	4.2821549999999995	4.32237	0.00276729	0.00273222	0.0247437	0.0237575
chr14	35308963	35308979	14225545	0	+	0.375	(0.36,0.39]	chr14	1113830	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000627895.2:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1:ENST00000555050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.24194	4.2821549999999995	4.32237	0.00276729	0.00273222	0.0247437	0.0237575
chr16	490066	490160	15482310	0	+	0.382979	(0.36,0.39]	chr16	1224530	7	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6:ENST00000412256.1:ENST00000495663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.24194	4.2821549999999995	4.32237	0.00276729	0.00273222	0.0247437	0.0237575
chr16	9156593	9156689	15845264	0	-	0.385417	(0.36,0.39]	chr16	1265615	3	EXON_PSEUDO	EXON_PSEUDO	RPL21P119	ENSG00000220793.5	ENST00000484462.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	4.24194	4.2821549999999995	4.32237	0.00276729	0.00273222	0.0247437	0.0237575
chr4	56032789	56032884	4845388	0	+	0.378947	(0.36,0.39]	chr4	399272	16	UTR3	UTR3:EXON_MRNA	CEP135	ENSG00000174799.11	ENST00000257287.5:ENST00000506202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.24194	4.2821549999999995	4.32237	0.00276729	0.00273222	0.0247437	0.0237575
chr8	17208025	17208092	9211401	0	+	0.373134	(0.36,0.39]	chr8	703653	2	CDS	CDS:EXON_MRNA	ZDHHC2	ENSG00000104219.13	ENST00000262096.13:ENST00000517334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.24194	4.2821549999999995	4.32237	0.00276729	0.00273222	0.0247437	0.0237575
chr1	110892344	110892438	405561	0	+	0.542553	(0.53,0.59]	chr1	39812	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000471220.5:ENST00000476408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	3.7312	4.28214	4.83308	1.38467e-5	1.94849e-7	3.5918e-4	1.11133e-5
chr9	83972112	83972189	10712907	0	-	0.38961	(0.36,0.39]	chr9	810502	4	CDS	CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	4.08155	4.2820800000000006	4.48261	9.85897e-7	3.60168e-8	3.94225e-5	2.56668e-6
chr17	59697708	59697793	16619192	0	-	0.482353	(0.455,0.49]	chr17	1365579	3	CDS	CDS:EXON_MRNA:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.8036	4.28204	4.76048	3.99985e-4	1.59194e-4	0.00588767	0.00263091
chr18	35337682	35337770	17076694	0	-	0.465909	(0.455,0.49]	chr18	1402844	5	CDS	CDS:UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.8036	4.28204	4.76048	3.99985e-4	1.59194e-4	0.00588767	0.00263091
chr1	38710596	38710694	144555	0	+	0.377551	(0.36,0.39]	chr1	18021	18	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	320	2	3.45619	4.282005	5.10782	1.56166e-5	1e-12	4.37822e-4	2.25522e-10
chr19	52143238	52143336	17381842	0	+	0.397959	(0.39,0.42]	chr19	1445698	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	CTC-471J1.9:RPL37P23	ENSG00000268458.1:ENSG00000243680.1	ENST00000597886.1:ENST00000492641.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	84	2	4.19944	4.281925	4.36441	4.74002e-6	3.02671e-8	1.63674e-4	2.0129e-6
chr10	28583451	28583505	10990252	0	+	0.351852	(0.33,0.36]	chr10	835857	2	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	3.86112	4.28169	4.70226	5.30957e-7	4.21411e-7	2.33308e-5	2.13696e-5
chr1	21832550	21832606	890715	0	-	0.642857	(0.59,1]	chr1	92258	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.38614	4.28141	6.17668	0.0128707	7.29392e-6	0.0725185	2.3256e-4
chr1	228425014	228425084	1539727	0	-	0.685714	(0.59,1]	chr1	154179	1	CDS	CDS:EXON_MRNA	H3-4	ENSG00000168148.4	ENST00000366696.2	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.97653	4.28126	5.58599	0.00142722	1.04372e-4	0.0153442	0.00186841
chr15	89191079	89191149	15093396	0	+	0.471429	(0.455,0.49]	chr15	1187086	1	CDS	CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000568308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.40009	4.28112	5.16215	0.00120619	5.04348e-5	0.0129255	0.00113788
chr12	130833217	130833316	13620323	0	-	0.484848	(0.455,0.49]	chr12	1072795	56	INTRON	INTRON	STX2	ENSG00000111450.14	ENST00000261653.10:ENST00000392373.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.0204	4.28107	4.54174	0.00736097	0.00130137	0.0490627	0.0136936
chr16	28106439	28106497	15903581	0	-	0.465517	(0.455,0.49]	chr16	1273243	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000573275.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.0204	4.28107	4.54174	0.00736097	0.00130137	0.0490627	0.0136936
chr17	7260820	7260859	16429313	0	-	0.487179	(0.455,0.49]	chr17	1339394	1	CDS	CDS:EXON_MRNA:INTRON	RP1-4G17.5:CLDN7	ENSG00000262302.1:ENSG00000181885.18	ENST00000577138.1:ENST00000360325.11:ENST00000538261.7:ENST00000397317.8:ENST00000574070.5:ENST00000575313.1:ENST00000571881.2:ENST00000571932.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.0204	4.28107	4.54174	0.00736097	0.00130137	0.0490627	0.0136936
chr2	170061380	170061443	2200216	0	+	0.47619	(0.455,0.49]	chr2	201362	2	CDS	CDS:UTR3:EXON_MRNA	UBR3	ENSG00000144357.18	ENST00000272793.11:ENST00000430321.5:ENST00000392632.6:ENST00000439681.1:ENST00000444475.5:ENST00000474426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.0204	4.28107	4.54174	0.00736097	0.00130137	0.0490627	0.0136936
chr3	150622421	150622495	3808193	0	+	0.472973	(0.455,0.49]	chr3	325081	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	SELENOT	ENSG00000198843.13	ENST00000480740.5:ENST00000615547.4:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.0204	4.28107	4.54174	0.00736097	0.00130137	0.0490627	0.0136936
chr7	10451407	10451504	8129131	0	+	0.474227	(0.455,0.49]	chr7	621313	2	EXON_PSEUDO	EXON_PSEUDO	HSPA8P8	ENSG00000229091.3	ENST00000419827.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.0204	4.28107	4.54174	0.00736097	0.00130137	0.0490627	0.0136936
chr2	189564133	189564225	3082425	0	-	0.456522	(0.455,0.49]	chr2	272317	7	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.49033	4.281025	5.07172	7.92678e-4	8.3067e-5	0.00933379	0.00171126
chr1	38023628	38023727	143075	0	+	0.353535	(0.33,0.36]	chr1	17941	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	3.45014	4.28102	5.1119	8.23333e-5	1.11128e-8	0.00155613	9.32567e-7
chr17	40388623	40388722	16538727	0	-	0.323232	(0.29,0.33]	chr17	1354547	2	UTR3	UTR3:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000577541.1	protein_coding	protein_coding	protein_coding	protein_coding	10	144	2	3.79083	4.28094	4.77105	2.11162e-8	7.88425e-12	1.61147e-6	1.40843e-9
chr20	32150799	32150875	17752480	0	+	0.526316	(0.49,0.53]	chr20	1498506	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	3.57766	4.28079	4.98392	1.08022e-6	4.13969e-8	4.27337e-5	2.89671e-6
chr2	219224385	219224479	3191332	0	-	0.595745	(0.59,1]	chr2	280883	4	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.30708	4.2804400000000005	5.2538	0.00252451	5.85045e-4	0.0226777	0.00793559
chr5	72220155	72220249	6631313	0	-	0.574468	(0.53,0.59]	chr5	512531	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000515226.5:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	47	2	2.87264	4.280375	5.68811	0.00168899	5.40688e-6	0.0175515	1.64762e-4
chr1	21852765	21852832	890955	0	-	0.686567	(0.59,1]	chr1	92386	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	105	2	3.8973	4.27995	4.6626	2.15122e-4	2.85e-6	0.00360503	9.64791e-5
chr13	46779934	46780033	14012302	0	-	0.434343	(0.42,0.455]	chr13	1098852	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	3.83697	4.279945	4.72292	6.30836e-6	3.66958e-7	2.05914e-4	1.6957e-5
chr7	128748743	128748804	8521637	0	+	0.491803	(0.49,0.53]	chr7	650163	2	CDS	CDS:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	5	128	2	3.80999	4.279885	4.74978	7.46851e-6	1.83541e-10	2.37258e-4	2.32513e-8
chr5	136178173	136178273	6241260	0	+	0.37	(0.36,0.39]	chr5	486031	8	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.82613	4.279795	4.73346	3.2963e-4	1.39565e-4	0.00504024	0.0023599
chr11	66663657	66663757	11991740	0	+	0.36	(0.33,0.36]	chr11	922227	114	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.473	4.279775	5.08655	8.77304e-4	4.6453e-5	0.0101202	0.00106753
chr11	4107440	4107535	11774142	0	+	0.4	(0.39,0.42]	chr11	900954	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RRM1	ENSG00000167325.15	ENST00000532710.5:ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000526350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	3.35466	4.279505	5.20435	1.40185e-4	2.91423e-5	0.00236775	7.26551e-4
chr2	119248118	119248206	2024385	0	+	0.693182	(0.59,1]	chr2	191386	6	CDS	CDS:EXON_MRNA	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.11647	4.279415	5.44236	0.00535979	2.02004e-4	0.0406564	0.00317801
chr1	1051310	1051369	2403	0	+	0.661017	(0.59,1]	chr1	569	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.24972	4.279325	5.30893	0.00314037	4.67312e-4	0.0264943	0.00661038
chr16	571260	571355	15483055	0	+	0.610526	(0.59,1]	chr16	1224707	1	INTRON	INTRON	PIGQ:LA16c-407A10.3	ENSG00000007541.17:ENSG00000282907.1	ENST00000293874.2:ENST00000409527.6:ENST00000409439.6:ENST00000635107.1:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	50	2	3.24972	4.279325	5.30893	0.00314037	4.67312e-4	0.0264943	0.00661038
chr17	40408045	40408124	16538960	0	-	0.531646	(0.53,0.59]	chr17	1354657	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	3.15313	4.27905	5.40497	2.83308e-5	2.62198e-5	7.12614e-4	6.06365e-4
chr14	69885339	69885428	14688042	0	-	0.494382	(0.49,0.53]	chr14	1150336	1	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	47	2	3.76703	4.278945	4.79086	4.20783e-4	1.02216e-5	0.00611538	2.82175e-4
chr16	30953464	30953557	15632265	0	+	0.655914	(0.59,1]	chr16	1240823	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AC135048.13:ORAI3	ENSG00000261487.1:ENSG00000175938.7	ENST00000566056.1:ENST00000562642.1:ENST00000318663.5:ENST00000563161.1:ENST00000566237.1:ENST00000562699.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	25	2	3.98751	4.2789399999999995	4.57037	0.0301044	0.0054994	0.129773	0.0402071
chr19	10115751	10115820	17457676	0	-	0.623188	(0.59,1]	chr19	1460376	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000593054.5:ENST00000590158.1:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.98751	4.2789399999999995	4.57037	0.0301044	0.0054994	0.129773	0.0402071
chr19	11342914	11342982	17462752	0	-	0.602941	(0.59,1]	chr19	1461654	1	CDS	CDS:EXON_MRNA:INTRON	RAB3D:TMEM205	ENSG00000105514.8:ENSG00000105518.14	ENST00000589655.1:ENST00000447337.5:ENST00000593256.6:ENST00000586218.5:ENST00000586956.5:ENST00000354882.10:ENST00000586590.5:ENST00000585722.1:ENST00000587948.5:ENST00000589555.5:ENST00000588560.5:ENST00000588321.1:ENST00000586701.1:ENST00000592952.5:ENST00000590482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	25	2	3.98751	4.2789399999999995	4.57037	0.0301044	0.0054994	0.129773	0.0402071
chr9	91733121	91733199	10733122	0	-	0.692308	(0.59,1]	chr9	811987	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	25	2	3.98751	4.2789399999999995	4.57037	0.0301044	0.0054994	0.129773	0.0402071
chr3	53225660	53225755	4188983	0	-	0.484211	(0.455,0.49]	chr3	353770	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	3.79735	4.278915	4.76048	3.99985e-4	9.19204e-7	0.00588767	3.72813e-5
chr6	31860529	31860621	7662789	0	-	0.630435	(0.59,1]	chr6	585396	2	CDS	CDS:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	168	2	4.05897	4.2784200000000006	4.49787	9.22386e-6	6.09906e-7	2.83868e-4	2.62406e-5
chr1	155236244	155236319	1307067	0	-	0.586667	(0.53,0.59]	chr1	131991	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GBA	ENSG00000177628.16	ENST00000327247.9:ENST00000368373.8:ENST00000427500.7:ENST00000428024.3:ENST00000478472.1:ENST00000484489.5:ENST00000491081.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.99819	4.278395	4.5586	0.0111308	0.00161229	0.0665375	0.0169168
chr19	49336908	49336970	17369686	0	+	0.564516	(0.53,0.59]	chr19	1442735	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.99819	4.278395	4.5586	0.0111308	0.00161229	0.0665375	0.0169168
chr3	129394768	129394863	4444214	0	-	0.557895	(0.53,0.59]	chr3	369367	6	INTRON	INTRON	RPL32P3	ENSG00000251474.6	ENST00000510078.5:ENST00000507287.5:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	20	2	3.99819	4.278395	4.5586	0.0111308	0.00161229	0.0665375	0.0169168
chr5	177303985	177304077	6406798	0	+	0.586957	(0.53,0.59]	chr5	498038	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000502670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.99819	4.278395	4.5586	0.0111308	0.00161229	0.0665375	0.0169168
chr7	102926323	102926374	8958507	0	-	0.54902	(0.53,0.59]	chr7	685547	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FBXL13	ENSG00000161040.16	ENST00000448002.6:ENST00000379305.7:ENST00000456695.5:ENST00000313221.8:ENST00000436908.5:ENST00000379308.7:ENST00000455112.6:ENST00000477915.5:ENST00000468216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.99819	4.278395	4.5586	0.0111308	0.00161229	0.0665375	0.0169168
chr11	4055581	4055637	11773610	0	+	0.589286	(0.53,0.59]	chr11	900855	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000528656.5:ENST00000525055.5:ENST00000526771.5:ENST00000527484.5:ENST00000533445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.00393	4.278335	4.55274	0.0108084	0.00167999	0.064368	0.0164993
chr12	50992264	50992339	13330050	0	-	0.533333	(0.53,0.59]	chr12	1046735	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000551231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.00393	4.278335	4.55274	0.0108084	0.00167999	0.064368	0.0164993
chr14	22921003	22921046	14527886	0	-	0.55814	(0.53,0.59]	chr14	1138119	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000557443.5:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	4.00393	4.278335	4.55274	0.0108084	0.00167999	0.064368	0.0164993
chr14	23026318	23026375	14528763	0	-	0.561404	(0.53,0.59]	chr14	1138375	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	4.00393	4.278335	4.55274	0.0108084	0.00167999	0.064368	0.0164993
chr20	5185757	5185826	17661719	0	+	0.550725	(0.53,0.59]	chr20	1493306	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDS2	ENSG00000101290.14	ENST00000450570.1:ENST00000460006.6:ENST00000468817.5:ENST00000379070.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	4.00393	4.278335	4.55274	0.0108084	0.00167999	0.064368	0.0164993
chr6	131652830	131652891	7402828	0	+	0.540984	(0.53,0.59]	chr6	567371	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	4.00393	4.278335	4.55274	0.0108084	0.00167999	0.064368	0.0164993
chr14	60780065	60780153	14325340	0	+	0.397727	(0.39,0.42]	chr14	1119792	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	MNAT1:MAD2L1P1	ENSG00000020426.11:ENSG00000258445.3	ENST00000261245.9:ENST00000556764.5:ENST00000539616.6:ENST00000553354.5:ENST00000556153.3	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	1	28	2	3.66467	4.278315	4.89196	3.60066e-4	2.62166e-4	0.00544157	0.0039188
chr3	41233697	41233782	3432559	0	+	0.552941	(0.53,0.59]	chr3	298554	3	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	3.43342	4.278214999999999	5.12301	1.2852e-4	8.93729e-5	0.00241206	0.00165837
chr12	110038706	110038802	13084241	0	+	0.34375	(0.33,0.36]	chr12	1020322	13	UTR3	UTR3:EXON_MRNA	ANKRD13A	ENSG00000076513.17	ENST00000261739.9:ENST00000553251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	3.25272	4.2777899999999995	5.30286	2.63256e-4	1.23392e-5	0.00393206	3.58359e-4
chr2	135840555	135840648	2897906	0	-	0.408602	(0.39,0.42]	chr2	258480	11	UTR3	UTR3:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	4.25375	4.2776	4.30145	1.03195e-5	7.39643e-6	2.84226e-4	2.35326e-4
chr22	21447824	21447923	18302342	0	+	0.494949	(0.49,0.53]	chr22	1554129	12	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	11	231	2	4.173	4.277405	4.38181	1.17918e-9	4.67204e-11	1.31429e-7	6.9126e-9
chr10	74105050	74105125	11117509	0	+	0.44	(0.42,0.455]	chr10	846275	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.4231	4.277395	5.13169	0.00112541	8.60227e-5	0.0128481	0.00160731
chr11	125597058	125597119	12194284	0	+	0.442623	(0.42,0.455]	chr11	940716	1	CDS	CDS:UTR5:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.4231	4.277395	5.13169	0.00112541	8.60227e-5	0.0128481	0.00160731
chr6	26202155	26202254	7101583	0	+	0.434343	(0.42,0.455]	chr6	542853	1	EXON_PSEUDO	EXON_PSEUDO	RP1-34B20.4	ENSG00000217275.2	ENST00000405418.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.4231	4.277395	5.13169	0.00112541	8.60227e-5	0.0128481	0.00160731
chr11	32933239	32933338	11899059	0	+	0.373737	(0.36,0.39]	chr11	909001	16	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.96717	4.27732	4.58747	6.55819e-4	6.17763e-5	0.00860229	0.00122919
chr15	101646811	101646899	15479009	0	-	0.386364	(0.36,0.39]	chr15	1223771	2	CDS	CDS:UTR3:EXON_MRNA	TM2D3	ENSG00000184277.13	ENST00000559107.5:ENST00000428002.6:ENST00000558129.5:ENST00000347970.7:ENST00000333202.8:ENST00000561373.1:ENST00000560013.5:ENST00000558677.5:ENST00000559024.5:ENST00000560910.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.96717	4.27732	4.58747	6.55819e-4	6.17763e-5	0.00860229	0.00122919
chr9	33038803	33038903	10233738	0	+	0.46	(0.455,0.49]	chr9	769285	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DNAJA1	ENSG00000086061.16	ENST00000330899.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.89235	4.277225	4.6621	7.84472e-4	9.60445e-5	0.00927662	0.00190731
chr3	169709482	169709576	3876811	0	+	0.521277	(0.49,0.53]	chr3	328315	3	EXON_PSEUDO	EXON_PSEUDO	SDHDP3	ENSG00000244381.1	ENST00000484597.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	3.51981	4.27681	5.03381	6.88328e-4	1.49689e-4	0.00876781	0.0024973
chr1	247879940	247880039	816554	0	+	0.313131	(0.29,0.33]	chr1	80729	36	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.24387	4.276735	4.3096	0.00263476	6.80571e-6	0.0239118	2.01083e-4
chr1	21874615	21874672	891205	0	-	0.666667	(0.59,1]	chr1	92506	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000427897.1:ENST00000498495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	58	2	4.10656	4.276635000000001	4.44671	0.00931497	6.70075e-5	0.0586162	0.00130461
chr9	97511575	97511675	10379584	0	+	0.44	(0.42,0.455]	chr9	781644	94	INTRON	INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.05889	4.276585	5.49428	0.00524205	1.07978e-5	0.0399155	2.9314e-4
chr8	43122393	43122489	9308497	0	+	0.5625	(0.53,0.59]	chr8	712878	4	CDS	CDS:UTR3:EXON_MRNA	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674937.1:ENST00000614426.2:ENST00000674782.1:ENST00000676178.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.21941	4.27646	5.33351	0.00266171	4.35359e-5	0.0240332	0.00091744700000000005
chr6	26027096	26027152	7646922	0	-	0.517857	(0.49,0.53]	chr6	582483	2	CDS	CDS:EXON_MRNA	H4C2	ENSG00000278705.2	ENST00000377745.4	protein_coding	protein_coding	protein_coding	protein_coding	6	127	2	3.77525	4.27642	4.77759	2.13421e-7	2.52913e-9	1.07444e-5	2.56814e-7
chr17	44075943	44076043	16234051	0	+	0.62	(0.59,1]	chr17	1314333	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.41536	4.2760750000000005	5.13679	0.00164655	9.28022e-4	0.0163443	0.0111748
chr19	49340420	49340513	17369735	0	+	0.688172	(0.59,1]	chr19	1442769	2	UTR3	UTR3:EXON_MRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000595725.5:ENST00000323906.9:ENST00000597852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.92097	4.27591	5.63085	0.0102634	8.43355e-5	0.0628742	0.0015859
chr1	234607324	234607412	1558277	0	-	0.647727	(0.59,1]	chr1	155935	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7:ENST00000491430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.61023	4.275765	4.9413	0.00191468	7.25496e-4	0.0190905	0.00869086
chr19	2732850	2732940	17425547	0	-	0.711111	(0.59,1]	chr19	1453655	1	CDS	CDS:EXON_MRNA:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.61023	4.275765	4.9413	0.00191468	7.25496e-4	0.0190905	0.00869086
chr11	34086304	34086358	11905343	0	+	0.388889	(0.36,0.39]	chr11	909543	1	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	3.74283	4.275655	4.80848	1.50915e-5	1.65455e-7	4.23797e-4	8.63103e-6
chr11	34456664	34456740	11906187	0	+	0.447368	(0.42,0.455]	chr11	909803	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	3.2633	4.275565	5.28783	4.36674e-5	2.17539e-5	9.18809e-4	5.73422e-4
chr5	111120495	111120593	6144640	0	+	0.428571	(0.42,0.455]	chr5	480231	1	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.19078	4.275375	5.35997	0.00310864	2.41298e-5	0.0274272	5.6648e-4
chr3	49359138	49359235	4174062	0	-	0.340206	(0.33,0.36]	chr3	350894	1	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	9	154	2	4.12791	4.275295	4.42268	7.10597e-8	1.72371e-11	4.61375e-6	2.83398e-9
chr16	85803649	85803748	15798339	0	+	0.444444	(0.42,0.455]	chr16	1257142	7	EXON_MRNA	EXON_MRNA:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.57051	4.2751150000000004	5.97972	0.0265466	4.13864e-7	0.120071	1.88179e-5
chr7	99459204	99459263	8947118	0	-	0.457627	(0.455,0.49]	chr7	683039	2	CDS	CDS:EXON_MRNA:INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000491560.1:ENST00000488775.5:ENST00000394186.3:ENST00000481899.1:ENST00000523680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	144	2	3.71944	4.27458	4.82972	2.99776e-8	1.29944e-9	1.99516e-6	1.43153e-7
chr10	74427673	74427773	11120458	0	+	0.35	(0.33,0.36]	chr10	846375	287	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.02603	4.274345	4.52266	0.0071776	8.34989e-4	0.048188	0.0102956
chr2	70280785	70280885	1878810	0	+	0.36	(0.33,0.36]	chr2	177457	35	UTR3	UTR3:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000433351.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.02603	4.274345	4.52266	0.0071776	8.34989e-4	0.048188	0.0102956
chr3	14143382	14143481	3319510	0	+	0.353535	(0.33,0.36]	chr3	292109	17	UTR3	UTR3:EXON_MRNA:INTRON	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3:ENST00000626721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.02603	4.274345	4.52266	0.0071776	8.34989e-4	0.048188	0.0102956
chr3	69833596	69833696	3546787	0	+	0.34	(0.33,0.36]	chr3	308550	542	INTRON	INTRON	MITF	ENSG00000187098.17	ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.02603	4.274345	4.52266	0.0071776	8.34989e-4	0.048188	0.0102956
chr9	99217744	99217838	10766946	0	-	0.351064	(0.33,0.36]	chr9	815239	15	UTR3	UTR3:EXON_MRNA	ALG2	ENSG00000119523.10	ENST00000476832.2:ENST00000238477.5:ENST00000319033.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.02603	4.274345	4.52266	0.0071776	8.34989e-4	0.048188	0.0102956
chr9	122202576	122202672	10840273	0	-	0.34375	(0.33,0.36]	chr9	821173	1	UTR3	UTR3:EXON_MRNA	LHX6	ENSG00000106852.15	ENST00000373755.6:ENST00000340587.7:ENST00000394319.8:ENST00000373754.6:ENST00000559895.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.02603	4.274345	4.52266	0.0071776	8.34989e-4	0.048188	0.0102956
chr20	32145090	32145149	17752416	0	+	0.559322	(0.53,0.59]	chr20	1498482	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	3.20874	4.27411	5.33948	0.00278422	4.08763e-5	0.0241009	9.64741e-4
chr8	144317543	144317588	10148341	0	-	0.6	(0.59,1]	chr8	763464	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:PRIMIRNA:INTRON	DGAT1:MIR6848	ENSG00000185000.12:ENSG00000284229.1	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5:ENST00000611213.1:ENST00000527885.1:ENST00000524844.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	1	56	2	4.00624	4.274035	4.54183	0.0070583	1.12192e-4	0.0478044	0.00199438
chr8	123180453	123180525	10056194	0	-	0.458333	(0.455,0.49]	chr8	756486	3	EXON_SMALL	EXON_SMALL	U3	ENSG00000221461.2	ENST00000408534.2	snoRNA	snoRNA	snoRNA	snoRNA	5	104	2	4.09465	4.273994999999999	4.45334	7.13882e-8	4.89305e-8	4.62933e-6	3.02248e-6
chr12	56597642	56597739	13351658	0	-	0.587629	(0.53,0.59]	chr12	1051592	22	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	9	218	2	3.98986	4.273865000000001	4.55787	1.05198e-8	2.11869e-10	8.11801e-7	2.93265e-8
chr2	27381198	27381298	2570418	0	-	0.47	(0.455,0.49]	chr2	231539	1	UTR3	UTR3:EXON_MRNA	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.24286	4.273385	5.30391	2.77105e-4	3.12735e-5	0.00444204	6.97306e-4
chr20	5547171	5547269	17889037	0	-	0.346939	(0.33,0.36]	chr20	1514255	29	UTR3	UTR3:EXON_MRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.20756	4.2732600000000005	4.33896	0.00386591	0.00182033	0.0310764	0.0183913
chr3	69832897	69832997	3546780	0	+	0.36	(0.33,0.36]	chr3	308550	535	INTRON	INTRON	MITF	ENSG00000187098.17	ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.20756	4.2732600000000005	4.33896	0.00386591	0.00182033	0.0310764	0.0183913
chr9	112626894	112626994	10422754	0	+	0.36	(0.33,0.36]	chr9	784579	78	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.20756	4.2732600000000005	4.33896	0.00386591	0.00182033	0.0310764	0.0183913
chr9	113407726	113407825	10807724	0	-	0.393939	(0.39,0.42]	chr9	819089	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.16612	4.27322	5.38032	4.03393e-4	9.82886e-6	0.00550292	2.98194e-4
chr7	106099157	106099219	8977701	0	-	0.370968	(0.36,0.39]	chr7	687046	1	CDS	CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	96	2	4.13529	4.2731	4.41091	7.54264e-7	3.9833e-9	3.49213e-5	3.49875e-7
chr12	50099758	50099853	12870525	0	+	0.526316	(0.49,0.53]	chr12	999966	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9:ENST00000548573.5:ENST00000549274.1:ENST00000549526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	3.7546	4.27273	4.79086	4.20783e-4	2.09468e-4	0.00611538	0.00327655
chr4	135046057	135046156	5119834	0	+	0.515152	(0.49,0.53]	chr4	414782	7	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	33	2	3.7546	4.27273	4.79086	4.20783e-4	2.09468e-4	0.00611538	0.00327655
chr8	4584246	4584346	9675778	0	-	0.58	(0.53,0.59]	chr8	733289	1638	INTRON	INTRON	CSMD1	ENSG00000183117.19	ENST00000635120.2:ENST00000520002.5:ENST00000602557.5:ENST00000400186.7:ENST00000602723.5	protein_coding	protein_coding	protein_coding	protein_coding	9	179	2	2.21103	4.272460000000001	6.33389	7.99474e-4	1e-12	0.00995461	2.25522e-10
chr10	17230632	17230710	10938782	0	+	0.487179	(0.455,0.49]	chr10	832986	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	103	2	4.104	4.27239	4.44078	2.6997e-6	1.09214e-8	1.01511e-4	8.34724e-7
chr6	26196839	26196939	7647197	0	-	0.57	(0.53,0.59]	chr6	582540	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	104	2	3.17316	4.272095	5.37103	7.8686e-5	2.29476e-9	0.00164157	2.17437e-7
chr18	211677	211775	16716209	0	+	0.428571	(0.42,0.455]	chr18	1379161	5	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8:ENST00000578942.5:ENST00000383589.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	118	2	3.72075	4.2714099999999995	4.82207	3.10218e-7	1.82819e-9	1.65465e-5	1.78862e-7
chr15	25389848	25389948	15162110	0	-	0.48	(0.455,0.49]	chr15	1193492	137	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626068.2:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	2.35716	4.271395	6.18563	0.00260884	4.30535e-8	0.0230635	2.9886e-6
chr12	54232473	54232573	13342851	0	-	0.49	(0.455,0.49]	chr12	1049602	11	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.85172	4.2713849999999995	5.69105	0.010864	2.83777e-6	0.0643837	9.62519e-5
chr1	40072277	40072370	151983	0	+	0.516129	(0.49,0.53]	chr1	19043	9	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	7	140	2	3.6796	4.271365	4.86313	1.3172e-7	1.12028e-9	7.0929e-6	1.26546e-7
chr20	32194970	32195069	17941020	0	-	0.515152	(0.49,0.53]	chr20	1519244	26	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.99849	4.271195	5.5439	0.00630123	8.44877e-6	0.0445415	2.39255e-4
chrX	153693314	153693366	18915615	0	+	0.576923	(0.53,0.59]	chrX	1611184	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	133	2	3.86898	4.270855	4.67273	6.55143e-7	3.10107e-8	3.09247e-5	2.05179e-6
chr8	85338251	85338350	9920410	0	-	0.424242	(0.42,0.455]	chr8	749289	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5:ENST00000524324.5:ENST00000517618.5:ENST00000519991.5:ENST00000520663.5:ENST00000517590.5:ENST00000518233.5:ENST00000517429.5:ENST00000521846.5:ENST00000522579.5:ENST00000518341.5:ENST00000522814.5:ENST00000522662.5:ENST00000523858.5:ENST00000520093.5:ENST00000520990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.70611	4.27072	5.83533	0.00397496	1.15767e-6	0.0322851	4.52486e-5
chr5	65555938	65556037	6617171	0	-	0.373737	(0.36,0.39]	chr5	511404	6	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000510354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	2.53311	4.27053	6.00795	0.00345778	2.19402e-7	0.0293796	1.09601e-5
chr12	124777802	124777897	13600139	0	-	0.663158	(0.59,1]	chr12	1071667	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.1277	4.270474999999999	5.41325	0.00490589	3.01546e-4	0.0366648	0.00472028
chr7	66606829	66606922	8837041	0	-	0.548387	(0.53,0.59]	chr7	674931	2	EXON_PSEUDO	EXON_PSEUDO	RPL35P5	ENSG00000225573.4	ENST00000433398.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	66	2	3.87884	4.270385	4.66193	1.11478e-4	7.20737e-7	0.00213212	3.019e-5
chr6	41935944	41936039	7701870	0	-	0.673684	(0.59,1]	chr6	590674	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5:ENST00000511686.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.89474	4.269945	5.64515	0.00190546	1.07144e-4	0.018313	0.00206452
chr20	45894828	45894901	17803036	0	+	0.547945	(0.53,0.59]	chr20	1505443	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.98115	4.269875	4.5586	0.00161229	6.28226e-5	0.0169168	0.00124286
chr4	87892138	87892237	4942237	0	+	0.464646	(0.455,0.49]	chr4	406011	4	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	92	2	3.90873	4.26974	4.63075	3.66904e-6	1.02236e-8	1.30734e-4	7.89931e-7
chr1	21874890	21874946	891210	0	-	0.696429	(0.59,1]	chr1	92510	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000498495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	2.03921	4.26966	6.50011	0.0371471	7.17564e-7	0.151849	3.01149e-5
chr1	108909148	108909248	396543	0	+	0.29	[0,0.29]	chr1	38352	50	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPSM2	ENSG00000121957.15	ENST00000406462.6:ENST00000441735.2:ENST00000642355.1:ENST00000645164.2:ENST00000675776.1:ENST00000264126.9:ENST00000676404.1:ENST00000674731.1:ENST00000674914.1:ENST00000674700.1:ENST00000675086.1:ENST00000676184.1:ENST00000675087.1:ENST00000675617.1:ENST00000446797.2:ENST00000643643.1:ENST00000643921.1:ENST00000675740.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.47088	4.2694	5.06792	0.0015572	6.88295e-5	0.0165415	0.00133223
chr11	77637714	77637794	12473733	0	-	0.65	(0.59,1]	chr11	970339	1	UTR5	UTR5:EXON_MRNA	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	136	2	4.13758	4.269355	4.40113	1.5917e-5	2.62983e-6	4.44589e-4	9.04922e-5
chr10	84560806	84560898	11167546	0	+	0.391304	(0.39,0.42]	chr10	848475	5	EXON_PSEUDO	EXON_PSEUDO	RPS3AP5	ENSG00000178429.9	ENST00000389400.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	166	2	4.21801	4.26898	4.31995	8.74658e-9	2.12375e-10	7.53993e-7	2.65e-8
chrX	119873303	119873393	18841964	0	+	0.433333	(0.42,0.455]	chrX	1605629	1	CDS	CDS:EXON_MRNA	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	16	342	2	2.89695	4.268825	5.6407	1.94206e-6	1e-12	7.69575e-5	2.25522e-10
chrX	154359245	154359325	19278083	0	-	0.575	(0.53,0.59]	chrX	1638308	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.86809	4.268725	4.66936	0.00103174	1.18973e-4	0.0121443	0.00207755
chr4	99076776	99076849	5548273	0	-	0.39726	(0.39,0.42]	chr4	443163	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5:ENST00000512604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.89848	4.268655	4.63883	5.68159e-4	9.30194e-5	0.0077844	0.00169783
chr4	146305925	146306009	5710628	0	-	0.392857	(0.39,0.42]	chr4	452175	1	CDS	CDS:EXON_MRNA	SLC10A7	ENSG00000120519.15	ENST00000432059.6:ENST00000335472.12:ENST00000507030.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.89848	4.268655	4.63883	5.68159e-4	9.30194e-5	0.0077844	0.00169783
chr2	148595242	148595328	2120753	0	+	0.453488	(0.42,0.455]	chr2	197073	2	EXON_PSEUDO	EXON_PSEUDO	RPS29P8	ENSG00000232238.1	ENST00000445109.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	58	2	3.73638	4.26851	4.80064	3.0479e-4	1.4989e-6	0.00472028	5.63087e-5
chr2	157259342	157259439	2152117	0	+	0.525773	(0.49,0.53]	chr2	198573	13	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	4.1342	4.26825	4.4023	6.96953e-7	7.37827e-8	2.93629e-5	4.77128e-6
chr22	31956882	31956972	18351655	0	+	0.466667	(0.455,0.49]	chr22	1560136	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	123	2	3.81956	4.268165	4.71677	3.31178e-7	1.17335e-8	1.74638e-5	8.87793e-7
chr12	110327924	110328017	13085711	0	+	0.483871	(0.455,0.49]	chr12	1020497	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547050.1:ENST00000549840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	4.1464	4.267785	4.38917	3.90809e-6	4.96602e-8	1.38004e-4	3.06593e-6
chr7	44579279	44579378	8800225	0	-	0.414141	(0.39,0.42]	chr7	671335	15	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	1.87119	4.26769	6.66419	0.0373134	1.22831e-9	0.152293	1.2604e-7
chr5	139614696	139614774	6250443	0	+	0.410256	(0.39,0.42]	chr5	487097	1	CDS	CDS:EXON_MRNA	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	184	2	4.02732	4.26749	4.5076599999999996	4.03515e-9	3.75193e-11	3.8556e-7	5.68875e-9
chr1	180834873	180834959	586107	0	+	0.488372	(0.455,0.49]	chr1	60707	1	CDS	CDS:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	3.24286	4.267345	5.29183	2.77105e-4	2.89856e-9	0.00444204	2.64796e-7
chr18	57601451	57601551	17137462	0	-	0.28	[0,0.29]	chr18	1407137	9	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	2.99086	4.26721	5.54356	3.24353e-5	2.29995e-6	7.18527e-4	8.86852e-5
chr13	41385100	41385183	13989921	0	-	0.590361	(0.59,1]	chr13	1097268	5	EXON_PSEUDO	EXON_PSEUDO	TUBBP2	ENSG00000214222.2	ENST00000454403.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	79	2	2.6892	4.26704	5.84488	0.00147019	4.10826e-5	0.0149767	9.68079e-4
chr1	54216208	54216276	200468	0	+	0.470588	(0.455,0.49]	chr1	25605	2	CDS	CDS:EXON_MRNA	MRPL37	ENSG00000116221.15	ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000398219.2	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.40664	4.266945	6.12725	0.0123662	1.23635e-7	0.0705839	6.7072e-6
chr19	11120177	11120233	17230183	0	+	0.517857	(0.49,0.53]	chr19	1419608	1	CDS	CDS:UTR3:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	3.83319	4.266945	4.7007	1.34601e-4	4.46291e-7	0.00249552	2.00907e-5
chr3	196065442	196065521	4663312	0	-	0.35443	(0.33,0.36]	chr3	385603	1	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	248	2	4.0944	4.266935	4.43947	1.09442e-11	1.02278e-11	2.06874e-9	1.77439e-9
chr19	49499635	49499708	17370828	0	+	0.506849	(0.49,0.53]	chr19	1443169	1	UTR3	UTR3:EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000270625.7:ENST00000594493.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	72	2	3.28793	4.26686	5.24579	4.073e-5	3.28736e-6	9.64741e-4	1.08855e-4
chr9	111097324	111097413	10796641	0	-	0.41573	(0.39,0.42]	chr9	817683	1	EXON_SMALL	EXON_SMALL	RNY4P18	ENSG00000212409.1	ENST00000391107.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	29	2	3.4261	4.266855	5.10761	0.00107164	5.12039e-5	0.0118238	0.00114668
chr14	102081811	102081821	14792128	0	-	0.3	(0.29,0.33]	chr14	1159061	1	CDS	CDS:EXON_MRNA	HSP90AA1	ENSG00000080824.19	ENST00000216281.13:ENST00000334701.11	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.14932	4.26665	5.38398	1.84463e-4	1.15499e-5	0.00321185	3.09736e-4
chr18	9400724	9400823	16753339	0	+	0.252525	[0,0.29]	chr18	1381535	13	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.95883	4.266495	4.57416	6.75561e-4	6.6966e-5	0.00873562	0.00130441
chr1	168235100	168235182	526414	0	+	0.463415	(0.455,0.49]	chr1	56516	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SFT2D2	ENSG00000213064.10	ENST00000471981.1:ENST00000367829.5:ENST00000271375.7:ENST00000630869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.56037	4.266475	4.97258	5.72551e-4	1.84876e-4	0.0078026	0.00296795
chr20	35556953	35557031	17769476	0	+	0.551282	(0.53,0.59]	chr20	1501145	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000413587.5:ENST00000465298.1:ENST00000442139.5:ENST00000451605.1:ENST00000488935.5:ENST00000488384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	3.58031	4.26632	4.95233	3.02711e-4	3.64147e-5	0.00439897	8.79008e-4
chr19	40451441	40451492	17566520	0	-	0.627451	(0.59,1]	chr19	1476393	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	222	2	3.62441	4.266065	4.90772	1.0099e-5	1.90013e-8	2.79298e-4	1.47322e-6
chr9	113260373	113260473	10425120	0	+	0.52	(0.49,0.53]	chr9	784740	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	4.03352	4.265925	4.49833	1.88388e-6	1.50496e-6	7.53959e-5	5.64695e-5
chr8	144317388	144317445	10148339	0	-	0.54386	(0.53,0.59]	chr8	763462	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	DGAT1:MIR6848	ENSG00000185000.12:ENSG00000284229.1	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5:ENST00000611213.1:ENST00000527885.1:ENST00000524844.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	3	70	2	1.78041	4.26586	6.75131	0.0407112	1.99745e-9	0.163285	1.9363e-7
chr13	21628670	21628756	13928413	0	-	0.406977	(0.39,0.42]	chr13	1092751	4	EXON_PSEUDO	EXON_PSEUDO	RPS7P10	ENSG00000226525.5	ENST00000464254.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	34	2	4.20029	4.265795	4.3313	0.00209984	1.46608e-5	0.0204266	3.77398e-4
chrX	48915019	48915098	19063621	0	-	0.493671	(0.49,0.53]	chrX	1620596	1	CDS	CDS:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.54118	4.26576	4.99034	1.6002e-4	4.50577e-5	0.00286408	9.4221e-4
chr15	40933247	40933347	14884408	0	+	0.53	(0.49,0.53]	chr15	1169097	4	INTRON	INTRON	DLL4	ENSG00000128917.8	ENST00000249749.7:ENST00000559440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.44951	4.26506	5.08061	0.0405223	1.00361e-4	0.153343	0.00196575
chr1	59526033	59526133	221953	0	+	0.31	(0.29,0.33]	chr1	26897	132	INTRON	INTRON	FGGY	ENSG00000172456.18	ENST00000634606.1:ENST00000474476.5:ENST00000371218.8:ENST00000495718.5:ENST00000430447.5:ENST00000634364.1:ENST00000303721.12:ENST00000635297.1:ENST00000634399.1:ENST00000424725.2:ENST00000635156.1:ENST00000371212.5:ENST00000475949.5:ENST00000485720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.0747	4.26502	4.45534	0.00577533	0.00110984	0.0417823	0.0127344
chr10	11556405	11556505	11368076	0	-	0.31	(0.29,0.33]	chr10	866945	243	INTRON	INTRON	USP6NL	ENSG00000148429.14	ENST00000609104.5:ENST00000379237.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.0747	4.26502	4.45534	0.00577533	0.00110984	0.0417823	0.0127344
chr11	134161835	134161891	12674987	0	-	0.321429	(0.29,0.33]	chr11	983334	2	CDS	CDS:UTR3:EXON_MRNA	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000534532.6:ENST00000525964.6:ENST00000527944.1:ENST00000530396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	4.0747	4.26502	4.45534	0.00577533	0.00110984	0.0417823	0.0127344
chr4	87340547	87340606	5518035	0	-	0.508475	(0.49,0.53]	chr4	441932	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-529H2.2:HSD17B11	ENSG00000255723.1:ENSG00000198189.11	ENST00000508163.1:ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	2	45	2	3.6358	4.264925	4.89405	2.57983e-4	2.45857e-5	0.00419998	5.74553e-4
chrX	3608550	3608648	18930877	0	-	0.397959	(0.39,0.42]	chrX	1613357	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKX	ENSG00000183943.6	ENST00000262848.6:ENST00000462736.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.85207	4.26486	4.67765	7.04737e-4	1.28587e-4	0.00848325	0.00241206
chr1	160351296	160351372	496728	0	+	0.578947	(0.53,0.59]	chr1	53460	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	4.09676	4.264775	4.43279	0.0026472	3.14727e-5	0.0231864	7.72298e-4
chr1	21864156	21864213	891088	0	-	0.719298	(0.59,1]	chr1	92448	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.89841	4.264735	4.63106	0.00537945	1.91539e-4	0.0406564	0.00304814
chr2	48378109	48378208	1788996	0	+	0.262626	[0,0.29]	chr2	172754	28	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.16	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.6058500000000002	4.264530000000001	4.92321	4.75429e-4	1.17014e-4	0.00627814	0.00222617
chr5	78449934	78450034	6051150	0	+	0.38	(0.36,0.39]	chr5	474719	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.69835	4.264435	4.83052	3.2708e-4	3.15227e-4	0.00502339	0.00452711
chr6	26216262	26216362	7647239	0	-	0.58	(0.53,0.59]	chr6	582557	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC8	ENSG00000273802.2	ENST00000541790.3	protein_coding	protein_coding	protein_coding	protein_coding	10	238	2	3.76004	4.264385	4.76873	2.78284e-8	2.7119e-11	2.04453e-6	4.24275e-9
chr15	34088052	34088133	15202818	0	-	0.407407	(0.39,0.42]	chr15	1196592	1	CDS	CDS:EXON_MRNA	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.75753	4.264295000000001	4.77106	3.03764e-4	2.04026e-4	0.00472028	0.00320361
chr19	2248546	2248600	17195932	0	+	0.648148	(0.59,1]	chr19	1412821	1	UTR3	UTR3:EXON_MRNA	SF3A2	ENSG00000104897.10	ENST00000221494.10	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	3.01792	4.26422	5.51052	0.00111911	0.00019737500000000001	0.0121894	0.00336487
chr1	101786730	101786827	1200897	0	-	0.474227	(0.455,0.49]	chr1	117316	5	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	50	2	2.35972	4.2641	6.16848	0.0058634	8.97995e-8	0.0427941	5.08654e-6
chr12	110038898	110038994	13084243	0	+	0.40625	(0.39,0.42]	chr12	1020322	15	UTR3	UTR3:EXON_MRNA	ANKRD13A	ENSG00000076513.17	ENST00000261739.9:ENST00000553251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.44923	4.2638750000000005	5.07852	0.00105208	1.02164e-4	0.0123035	0.00183311
chr11	32931941	32932041	11899046	0	+	0.47	(0.455,0.49]	chr11	909001	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	4.08686	4.26382	4.44078	2.6997e-6	9.7689e-7	1.01511e-4	3.91836e-5
chr4	6640669	6640765	4704227	0	+	0.489583	(0.455,0.49]	chr4	390523	7	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRFAP1	ENSG00000179010.15	ENST00000617365.4:ENST00000320912.8:ENST00000382581.5:ENST00000507420.1:ENST00000512914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.65545	4.263655	4.87186	3.50134e-4	2.33781e-4	0.0049086	0.00385436
chr12	120782710	120782767	13581918	0	-	0.473684	(0.455,0.49]	chr12	1069239	2	CDS	CDS:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.65079	4.26356	4.87633	3.61776e-4	2.95855e-4	0.00544764	0.00432147
chr3	47579792	47579892	4161723	0	-	0.52	(0.49,0.53]	chr3	348301	12	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CSPG5	ENSG00000114646.10	ENST00000383738.6:ENST00000465441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	3.11892	4.263505	5.40809	0.00398244	1.1109e-9	0.0322851	1.14803e-7
chr6	149771161	149771199	7481718	0	+	0.289474	[0,0.29]	chr6	571755	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	3.47088	4.26347	5.0560600000000004	0.0015572	1.73401e-8	0.0165415	1.24941e-6
chr13	39014079	39014178	13976239	0	-	0.575758	(0.53,0.59]	chr13	1096566	15	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	4.04528	4.263395	4.48151	4.28524e-5	2.61211e-6	9.98851e-4	8.99269e-5
chr17	42500778	42500850	16228599	0	+	0.416667	(0.39,0.42]	chr17	1312960	2	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	3.23174	4.26338	5.29502	2.82122e-4	1.68146e-5	0.00415762	4.64895e-4
chr20	21166498	21166596	17925238	0	-	0.510204	(0.49,0.53]	chr20	1517257	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	KIZ-AS1:RPS15AP1	ENSG00000232712.6:ENSG00000214535.3	ENST00000616177.4:ENST00000457423.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	83	2	3.90194	4.26308	4.62422	9.11374e-5	1.16248e-8	0.00182992	8.81286e-7
chr7	76302911	76303011	8343342	0	+	0.74	(0.59,1]	chr7	636372	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000675733.1:ENST00000674560.1:ENST00000675624.1:ENST00000675488.1:ENST00000676398.1:ENST00000447574.1:ENST00000674650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	134	2	4.00489	4.2629850000000005	4.52108	8.07535e-6	6.00766e-6	2.52239e-4	1.80766e-4
chr2	15275650	15275734	2527210	0	-	0.440476	(0.42,0.455]	chr2	227327	3	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.61323	4.2626800000000005	4.91213	1.75074e-4	2.83914e-5	0.00306313	6.46853e-4
chr14	22924631	22924709	14527935	0	-	0.435897	(0.42,0.455]	chr14	1138150	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000553502.5:ENST00000555530.5:ENST00000556043.5:ENST00000553550.5:ENST00000554716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	3.84538	4.262595	4.67981	5.38444e-4	1.2691e-4	0.00744072	0.00219756
chr21	14963720	14963819	18167898	0	-	0.424242	(0.42,0.455]	chr21	1542659	26	UTR3	UTR3:EXON_MRNA:INTRON	AF127936.9:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	32	2	3.84538	4.262595	4.67981	5.38444e-4	1.2691e-4	0.00744072	0.00219756
chr12	53411927	53412025	12886187	0	+	0.44898	(0.42,0.455]	chr12	1002329	8	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	2.63704	4.262505	5.88797	8.57576e-5	3.72505e-7	0.00160731	1.92638e-5
chr21	44866445	44866543	18277587	0	-	0.561224	(0.53,0.59]	chr21	1550285	4	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.504	4.262465	6.02093	0.00279409	5.66478e-7	0.0241702	2.7364e-5
chr19	14764521	14764610	17482508	0	-	0.640449	(0.59,1]	chr19	1464810	2	CDS	CDS:EXON_MRNA	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.65509	4.26243	4.86977	0.00246014	5.95213e-4	0.0230058	0.00746384
chr12	56282925	56282991	13349958	0	-	0.545455	(0.53,0.59]	chr12	1051028	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000547449.1:ENST00000547912.1:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	4.08599	4.262309999999999	4.43863	0.00254763	3.38473e-5	0.0233955	7.45971e-4
chr1	161591143	161591228	501280	0	+	0.611765	(0.59,1]	chr1	54308	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000465075.6:ENST00000473530.6:ENST00000611236.1:ENST00000473712.6:ENST00000482226.2	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	1	52	2	2.84944	4.261905	5.67437	0.0128238	6.83706e-5	0.0719798	0.00132577
chr6	7881994	7882090	7587975	0	-	0.541667	(0.53,0.59]	chr6	578854	6	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.99511	4.261385	5.52766	9.46531e-4	1.38993e-5	0.010681	3.94563e-4
chr11	63749990	63750059	11976758	0	+	0.478261	(0.455,0.49]	chr11	918355	1	CDS	CDS:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	4.0992	4.261345	4.42349	2.73975e-5	3.27827e-6	6.95757e-4	1.08637e-4
chr1	202941386	202941479	1453184	0	-	0.430108	(0.42,0.455]	chr1	146051	7	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	264	2	3.66737	4.26122	4.85507	1.62754e-8	1e-12	1.29062e-6	2.25522e-10
chr3	127606678	127606747	3723448	0	+	0.507246	(0.49,0.53]	chr3	318248	2	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.4415	4.261055	5.08061	9.98297e-4	1.00361e-4	0.0111246	0.00196575
chr11	5301387	5301479	12241100	0	-	0.456522	(0.455,0.49]	chr11	946134	4	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	120	2	4.06527	4.261025	4.45678	4.23264e-8	1.56378e-8	2.95285e-6	1.1397e-6
chr15	50202503	50202603	14925348	0	+	0.44	(0.42,0.455]	chr15	1173414	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8:ENST00000544960.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.97371	4.260815	4.54792	9.66045e-4	6.07552e-5	0.0115185	0.00121305
chr11	57554448	57554548	12395070	0	-	0.5	(0.49,0.53]	chr11	958842	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBE2L6	ENSG00000156587.16	ENST00000340573.8:ENST00000287156.9:ENST00000528275.1:ENST00000527022.1:ENST00000526659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr12	131943682	131943778	13159572	0	+	0.510417	(0.49,0.53]	chr12	1028568	2	UTR3	UTR3:EXON_MRNA	PUS1	ENSG00000177192.14	ENST00000443358.6:ENST00000376649.8:ENST00000542167.2:ENST00000535067.5:ENST00000543754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr2	85579008	85579083	1925011	0	+	0.493333	(0.49,0.53]	chr2	181133	1	CDS	CDS:UTR5:EXON_MRNA	VAMP8	ENSG00000118640.11	ENST00000432071.1:ENST00000263864.10:ENST00000409760.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr3	184180916	184180984	3948218	0	+	0.529412	(0.49,0.53]	chr3	332025	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000411763.6:ENST00000439647.5:ENST00000432591.5:ENST00000472560.5:ENST00000621863.4:ENST00000490151.6:ENST00000468048.5:ENST00000461733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr4	17598506	17598558	4734188	0	+	0.519231	(0.49,0.53]	chr4	392760	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LAP3	ENSG00000002549.13	ENST00000226299.9:ENST00000618908.4:ENST00000606142.5:ENST00000513105.1:ENST00000504614.5:ENST00000503467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr5	96979619	96979708	6118365	0	+	0.516854	(0.49,0.53]	chr5	478776	5	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr8	41690536	41690599	9806644	0	-	0.507937	(0.49,0.53]	chr8	741585	2	CDS	CDS:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5:ENST00000645531.1:ENST00000524227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr9	78304734	78304802	10320840	0	+	0.514706	(0.49,0.53]	chr9	777258	1	CDS	CDS:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.23759	4.260455	4.28332	0.00436474	0.00338762	0.0335517	0.0288632
chr5	75351149	75351232	6037061	0	+	0.385542	(0.36,0.39]	chr5	473625	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	138	2	4.03361	4.260345	4.48708	1.71457e-6	3.98275e-11	6.95799e-5	6.00999e-9
chr1	111490316	111490369	1225078	0	-	0.396226	(0.39,0.42]	chr1	120009	1	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	TMIGD3:RNU6-792P	ENSG00000121933.19:ENSG00000200360.1	ENST00000369717.8:ENST00000369716.9:ENST00000443498.5:ENST00000363490.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	11	236	2	3.35542	4.26034	5.16526	7.54798e-7	1e-12	3.49262e-5	2.25522e-10
chrY	7063096	7063196	19305655	0	+	0.54	(0.53,0.59]	chrY	1640317	196	INTRON	INTRON	TBL1Y	ENSG00000092377.15	ENST00000355162.6:ENST00000346432.3:ENST00000383032.6	protein_coding	protein_coding	protein_coding	protein_coding	116	3030	2	2.8959	4.260315	5.62473	1.89273e-8	1e-12	1.46912e-6	2.25522e-10
chr22	19037572	19037671	18430037	0	-	0.424242	(0.42,0.455]	chr22	1570339	14	UTR3	UTR3:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	201	2	3.59774	4.260185	4.92263	3.92486e-8	1.44174e-12	2.50377e-6	3.41428e-10
chr2	231511832	231511931	3227181	0	-	0.40404	(0.39,0.42]	chr2	283931	21	INTRON	INTRON	LINC00471	ENSG00000181798.3	ENST00000668648.1:ENST00000313064.3	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	3.51636	4.260135	5.00391	6.99837e-4	9.12714e-5	0.00846751	0.00182992
chr9	4805993	4806093	10165595	0	+	0.4	(0.39,0.42]	chr9	765510	124	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.51636	4.260135	5.00391	6.99837e-4	9.12714e-5	0.00846751	0.00182992
chr17	38726297	38726397	16217653	0	+	0.56	(0.53,0.59]	chr17	1310712	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	94	2	3.11779	4.2601249999999995	5.40246	5.11883e-4	1.6811e-9	0.00664583	1.79426e-7
chr7	117136080	117136152	8480069	0	+	0.375	(0.36,0.39]	chr7	647658	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000487459.5:ENST00000393443.5:ENST00000465133.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	3.58637	4.26009	4.93381	5.84377e-4	1.90009e-4	0.00793559	0.00302753
chr20	44906936	44907036	17799156	0	+	0.47	(0.455,0.49]	chr20	1504696	6	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.96464	4.2597000000000005	4.55476	6.27408e-5	1.27404e-6	0.00135074	4.90986e-5
chr8	144359856	144359942	9652286	0	+	0.55814	(0.53,0.59]	chr8	731964	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	2.2732	4.25961	6.24602	0.00369236	1.15746e-7	0.030936	6.3314e-6
chr12	24817308	24817408	13255729	0	-	0.49	(0.455,0.49]	chr12	1038842	74	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	6	126	2	3.97791	4.2591850000000004	4.54046	1.98198e-7	1.3005e-9	1.12832e-5	1.32589e-7
chr15	89314008	89314108	15434701	0	-	0.38	(0.36,0.39]	chr15	1220504	84	INTRON	INTRON	POLG	ENSG00000140521.17	ENST00000635831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.53094	4.2591850000000004	4.98743	0.0305588	8.82225e-5	0.130016	0.00178337
chr4	169720455	169720552	5218195	0	+	0.350515	(0.33,0.36]	chr4	420942	5	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.94141	4.25896	5.57651	1.08179e-4	1.91451e-6	0.00193141	7.60536e-5
chr7	66553967	66554063	8836648	0	-	0.416667	(0.39,0.42]	chr7	674887	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	GS1-124K5.12:RP4-756H11.5	ENSG00000229180.7:ENSG00000275400.1	ENST00000639011.1:ENST00000649635.1:ENST00000638711.1:ENST00000622243.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	5	131	2	3.45983	4.258895	5.05796	8.68166e-5	6.09057e-12	0.00177086	1.12013e-9
chr11	6613754	6613853	12249913	0	-	0.40404	(0.39,0.42]	chr11	946834	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	12	189	2	3.6838	4.258805	4.83381	3.84194e-9	4.07943e-11	3.39055e-7	6.71989e-9
chr11	4101992	4102081	11774083	0	+	0.393258	(0.39,0.42]	chr11	900936	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RRM1	ENSG00000167325.15	ENST00000532710.5:ENST00000300738.10:ENST00000532170.5:ENST00000526865.5:ENST00000533349.5:ENST00000526350.5:ENST00000530368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	4.23561	4.258445	4.28128	0.00342611	1.16386e-5	0.0283456	3.43116e-4
chr6	27831215	27831315	7649614	0	-	0.62	(0.59,1]	chr6	582810	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C12	ENSG00000273542.2	ENST00000611927.2	protein_coding	protein_coding	protein_coding	protein_coding	15	598	2	4.07433	4.25841	4.44249	5.74124e-9	9.24745e-10	4.82655e-7	1.06951e-7
chr12	49186309	49186389	13324031	0	-	0.525	(0.49,0.53]	chr12	1045771	1	CDS	CDS:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1:ENST00000548363.1:ENST00000550254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	118	2	3.52743	4.25838	4.98933	7.08867e-6	3.87256e-10	2.27895e-4	4.52619e-8
chr1	149852965	149853065	464867	0	+	0.62	(0.59,1]	chr1	46810	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C15	ENSG00000203852.3	ENST00000403683.1	protein_coding	protein_coding	protein_coding	protein_coding	12	463	2	3.96614	4.258290000000001	4.55044	2.00196e-8	3.90952e-9	1.53734e-6	3.44174e-7
chr1	30757658	30757745	915807	0	-	0.62069	(0.59,1]	chr1	95905	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4:ENST00000476492.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.67996	4.258165	5.83637	0.00470478	3.04631e-5	0.0363963	6.83179e-4
chrX	71240815	71240915	19106941	0	-	0.52	(0.49,0.53]	chrX	1625381	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	4.01076	4.25811	4.50546	1.89933e-6	1.7263e-6	6.99335e-5	6.87959e-5
chr19	47197241	47197309	17360760	0	+	0.411765	(0.39,0.42]	chr19	1440980	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.19588	4.257785	5.31969	0.00321212	2.68682e-5	0.0280721	6.19143e-4
chr9	128190328	128190386	10863961	0	-	0.551724	(0.53,0.59]	chr9	823455	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	4.102	4.25765	4.4133	4.11992e-6	1.01285e-6	1.44702e-4	4.03248e-5
chr13	102262945	102263045	14136550	0	-	0.4	(0.39,0.42]	chr13	1106408	2166	INTRON	INTRON	FGF14	ENSG00000102466.16	ENST00000376131.8	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	4.1832	4.25725	4.3313	0.00209984	4.52427e-7	0.0204266	2.03369e-5
chr2	65205498	65205596	1853945	0	+	0.459184	(0.455,0.49]	chr2	175914	5	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	88	2	3.94061	4.257065	4.57352	2.93826e-6	1.47696e-8	9.91141e-5	1.18379e-6
chr12	120438449	120438521	13116049	0	+	0.611111	(0.59,1]	chr12	1023747	2	CDS	CDS:EXON_MRNA	COX6A1:AL021546.6	ENSG00000111775.3:ENSG00000111780.8	ENST00000550009.1:ENST00000229379.3:ENST00000551806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	134	2	3.72049	4.25675	4.79301	3.21194e-5	1.60221e-6	7.12253e-4	6.53758e-5
chr11	63974619	63974680	11977971	0	+	0.52459	(0.49,0.53]	chr11	918575	1	UTR5	UTR5:EXON_MRNA	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	8	169	2	4.06683	4.25662	4.44641	1.64367e-8	3.73174e-10	1.18997e-6	4.84694e-8
chr11	62881288	62881370	11974404	0	+	0.670732	(0.59,1]	chr11	918032	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000539458.1:ENST00000541372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	177	2	2.67996	4.25588	5.8318	0.00470478	8.68477e-10	0.0363963	9.27444e-8
chr1	150968394	150968453	1291402	0	-	0.576271	(0.53,0.59]	chr1	128700	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000368949.8:ENST00000361419.9:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	3.84214	4.25575	4.66936	0.00103174	6.5494e-6	0.0121443	1.94116e-4
chrX	47657571	47657639	19061136	0	-	0.455882	(0.455,0.49]	chrX	1620037	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000485641.5:ENST00000376964.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	3.43961	4.2556650000000005	5.07172	8.42878e-5	8.3067e-5	0.00171126	0.0015859
chr11	121306385	121306435	12176646	0	+	0.32	(0.29,0.33]	chr11	939022	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SC5D	ENSG00000109929.10	ENST00000531140.1:ENST00000264027.9:ENST00000534230.5:ENST00000527762.5:ENST00000392789.2:ENST00000528991.1:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	3.48001	4.255625	5.03124	0.00126219	9.06368e-5	0.013837	0.00167558
chr3	48747184	48747284	4170006	0	-	0.33	(0.29,0.33]	chr3	350020	7	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.48001	4.255625	5.03124	0.00126219	9.06368e-5	0.013837	0.00167558
chr6	3153763	3153862	7571336	0	-	0.40404	(0.39,0.42]	chr6	577784	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUBB2A	ENSG00000137267.7	ENST00000679400.1:ENST00000333628.4:ENST00000679907.1:ENST00000680036.1:ENST00000680967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	3.0503	4.25547	5.46064	0.00570576	1.15573e-5	0.0424438	3.09736e-4
chrX	120626592	120626687	19197523	0	-	0.410526	(0.39,0.42]	chrX	1632210	4	CDS	CDS:EXON_MRNA	C1GALT1C1	ENSG00000171155.8	ENST00000304661.6:ENST00000371313.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.0503	4.25547	5.46064	0.00570576	1.15573e-5	0.0424438	3.09736e-4
chr22	28795274	28795364	18464269	0	-	0.522222	(0.49,0.53]	chr22	1574928	1	CDS	CDS:UTR3:EXON_MRNA	XBP1	ENSG00000100219.16	ENST00000216037.10:ENST00000403532.7:ENST00000484256.1:ENST00000611155.4:ENST00000405219.7:ENST00000344347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.9516	4.255445	4.55929	0.00116196	6.96459e-5	0.0130851	0.0013446
chr1	54045643	54045743	1027320	0	-	0.46	(0.455,0.49]	chr1	106634	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	4.00069	4.25437	4.50805	0.00122223	5.13615e-5	0.0135383	0.00104999
chr11	5343146	5343239	12241525	0	-	0.462366	(0.455,0.49]	chr11	946162	6	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	83	2	3.96899	4.253875	4.53876	1.31171e-6	2.27279e-7	5.53834e-5	1.1289e-5
chr2	26197690	26197777	2565708	0	-	0.45977	(0.455,0.49]	chr2	230555	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	4.1185600000000004	4.253865	4.38917	2.49433e-5	3.90809e-6	5.8178e-4	1.38004e-4
chr1	93278960	93279044	1171653	0	-	0.297619	(0.29,0.33]	chr1	115425	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	CCDC18-AS1:RP4-717I23.2	ENSG00000223745.8:ENSG00000229567.1	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1:ENST00000423010.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	63	2	4.20972	4.25383	4.29794	3.5038e-7	2.87452e-7	1.63119e-5	1.54944e-5
chr22	41637699	41637791	18381447	0	+	0.565217	(0.53,0.59]	chr22	1564693	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.57867	4.253755	5.92884	0.00198261	1.11987e-6	0.0195088	4.4003e-5
chr19	39836611	39836668	17563507	0	-	0.561404	(0.53,0.59]	chr19	1475735	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	46	2	3.2425	4.253705	5.26491	2.6381e-4	6.31437e-5	0.00427022	0.00124286
chr9	130887575	130887675	10494307	0	+	0.29	[0,0.29]	chr9	792936	20	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.6799	4.2536950000000004	5.82749	0.00121378	4.85228e-7	0.0135383	2.15406e-5
chr1	241993582	241993682	796776	0	+	0.59	(0.53,0.59]	chr1	79501	5	EXON_PSEUDO	EXON_PSEUDO	CFL1P4	ENSG00000213026.4	ENST00000451536.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	3.38347	4.25324	5.12301	0.00132446	1.2852e-4	0.0138834	0.00241206
chr6	52276406	52276476	7736716	0	-	0.585714	(0.53,0.59]	chr6	593727	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.46349	4.253235	5.04298	9.2216e-4	1.91383e-4	0.0104432	0.0032874
chr2	26278707	26278801	1686305	0	+	0.404255	(0.39,0.42]	chr2	164844	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	3.76462	4.253165	4.74171	1.17915e-6	2.6028e-7	4.5939e-5	1.4243e-5
chr10	72097054	72097147	11563918	0	-	0.290323	(0.29,0.33]	chr10	880108	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000534259.1:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000530394.5:ENST00000672940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.86651	4.253125	4.63974	0.0112245	4.81181e-4	0.0665375	0.00677016
chr3	45925939	45926038	4152343	0	-	0.323232	(0.29,0.33]	chr3	347010	18	INTRON	INTRON	FYCO1	ENSG00000163820.15	ENST00000535325.5:ENST00000296137.7:ENST00000433878.5:ENST00000438446.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.18804	4.2528950000000005	5.31775	3.92193e-4	1.06766e-5	0.00539186	3.17854e-4
chr9	4711216	4711313	10538662	0	-	0.381443	(0.36,0.39]	chr9	799168	18	UTR3	UTR3:EXON_MRNA	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.11463	4.25284	5.39105	1.14911e-4	7.73826e-6	0.00203731	2.43421e-4
chr3	4983592	4983692	3277646	0	+	0.5	(0.49,0.53]	chr3	288721	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	12	268	2	3.82987	4.252725	4.67558	3.17247e-8	1e-12	2.29924e-6	2.25522e-10
chr10	100548436	100548535	11220763	0	+	0.494949	(0.49,0.53]	chr10	854069	4	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.76099	4.252685	4.74438	5.91752e-4	2.00194e-4	0.00743488	0.0034021
chr9	128980605	128980665	10482555	0	+	0.516667	(0.49,0.53]	chr9	791052	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.76099	4.252685	4.74438	5.91752e-4	2.00194e-4	0.00743488	0.0034021
chr17	7579677	7579726	16105707	0	+	0.653061	(0.59,1]	chr17	1296982	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	25	2	3.84557	4.252625	4.65968	0.0410704	0.00413632	0.163285	0.0324998
chr2	219222360	219222450	3191305	0	-	0.655556	(0.59,1]	chr2	280866	2	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ATG9A	ENSG00000284820.1:ENSG00000198925.12	ENST00000446716.5:ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000429920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	25	2	3.84557	4.252625	4.65968	0.0410704	0.00413632	0.163285	0.0324998
chr20	49984087	49984175	17814684	0	+	0.636364	(0.59,1]	chr20	1506978	4	CDS	CDS:EXON_MRNA	SNAI1	ENSG00000124216.4	ENST00000244050.3	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.84557	4.252625	4.65968	0.0410704	0.00413632	0.163285	0.0324998
chr3	174440986	174441032	3902663	0	+	0.826087	(0.59,1]	chr3	329466	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NAALADL2	ENSG00000177694.16	ENST00000491329.5:ENST00000482228.5:ENST00000481679.5:ENST00000478624.1:ENST00000495900.5:ENST00000434257.1:ENST00000489729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	25	2	3.84557	4.252625	4.65968	0.0410704	0.00413632	0.163285	0.0324998
chr6	3177342	3177442	7571383	0	-	0.62	(0.59,1]	chr6	577800	4	EXON_PSEUDO	EXON_PSEUDO	TUBB2BP1	ENSG00000216819.1	ENST00000404155.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	25	2	3.84557	4.252625	4.65968	0.0410704	0.00413632	0.163285	0.0324998
chr6	27873198	27873298	7649646	0	-	0.61	(0.59,1]	chr6	582831	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C13	ENSG00000275126.2	ENST00000618305.2	protein_coding	protein_coding	protein_coding	protein_coding	0	25	2	3.84557	4.252625	4.65968	0.0410704	0.00413632	0.163285	0.0324998
chr19	12884791	12884884	17471802	0	-	0.591398	(0.59,1]	chr19	1463271	5	UTR3	UTR3:EXON_MRNA	KLF1	ENSG00000105610.6	ENST00000264834.6	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.56392	4.25261	4.9413	0.00191468	8.86707e-4	0.0190905	0.0101815
chr10	79354538	79354637	11148694	0	+	0.444444	(0.42,0.455]	chr10	847447	8	UTR3	UTR3:EXON_MRNA	PPIF	ENSG00000108179.14	ENST00000225174.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.70451	4.252575	4.80064	3.0479e-4	2.72131e-4	0.00472028	0.00404713
chr12	132077872	132077971	13160942	0	+	0.494949	(0.49,0.53]	chr12	1028841	3	UTR3	UTR3:EXON_MRNA	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000330386.7:ENST00000611739.4:ENST00000616136.1:ENST00000611118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.07719	4.252545	4.4279	0.0074411	0.00196987	0.0492519	0.0193972
chr16	5077444	5077499	15504833	0	+	0.527273	(0.49,0.53]	chr16	1229630	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	ALG1	ENSG00000033011.14	ENST00000682327.1:ENST00000650085.1:ENST00000682020.1:ENST00000682985.1:ENST00000683433.1:ENST00000588623.5:ENST00000682206.1:ENST00000682797.1:ENST00000684190.1:ENST00000684335.1:ENST00000683772.1:ENST00000682314.1:ENST00000683685.1:ENST00000586840.1:ENST00000683710.1:ENST00000262374.10:ENST00000682349.1:ENST00000592793.6:ENST00000682703.1:ENST00000591822.5:ENST00000684008.1:ENST00000591783.5:ENST00000544428.1:ENST00000683739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.07719	4.252545	4.4279	0.0074411	0.00196987	0.0492519	0.0193972
chr22	21675063	21675115	18303535	0	+	0.519231	(0.49,0.53]	chr22	1554311	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.07719	4.252545	4.4279	0.0074411	0.00196987	0.0492519	0.0193972
chr6	32830711	32830806	7667154	0	-	0.505263	(0.49,0.53]	chr6	586787	2	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4:ENST00000464100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.07719	4.252545	4.4279	0.0074411	0.00196987	0.0492519	0.0193972
chr6	31281426	31281519	7114343	0	+	0.483871	(0.455,0.49]	chr6	545583	13	EXON_PSEUDO	EXON_PSEUDO	RPL3P2	ENSG00000227939.1	ENST00000413027.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	2.50904	4.25251	5.99598	0.0310515	3.33072e-7	0.131262	1.56608e-5
chr1	23083445	23083526	97792	0	+	0.518519	(0.49,0.53]	chr1	11308	2	UTR3	UTR3:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr1	44000958	44001055	969383	0	-	0.525773	(0.49,0.53]	chr1	102255	3	CDS	CDS:EXON_MRNA	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr1	197222409	197222503	643082	0	+	0.521277	(0.49,0.53]	chr1	64783	3	EXON_PSEUDO	EXON_PSEUDO	RP11-332L8.1	ENSG00000237861.1	ENST00000417716.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr10	15154974	15155060	11386927	0	-	0.5	(0.49,0.53]	chr10	868124	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	NMT2:PPIAP30	ENSG00000152465.18:ENSG00000206448.3	ENST00000378165.9:ENST00000378150.1:ENST00000415473.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr13	19703274	19703360	13919870	0	-	0.5	(0.49,0.53]	chr13	1091913	1	CDS	CDS:EXON_MRNA:INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr16	74636499	74636577	16032740	0	-	0.5	(0.49,0.53]	chr16	1287440	3	CDS	CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr17	47980729	47980798	16253222	0	+	0.507246	(0.49,0.53]	chr17	1317062	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-6N17.9:CDK5RAP3	ENSG00000263798.2:ENSG00000108465.15	ENST00000641877.1:ENST00000536708.6:ENST00000584991.5:ENST00000584063.5:ENST00000338399.9:ENST00000585163.5:ENST00000580287.5:ENST00000580391.5:ENST00000580670.6:ENST00000584168.5:ENST00000583697.1:ENST00000578663.1:ENST00000582482.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr2	70986728	70986827	2728037	0	-	0.50505	(0.49,0.53]	chr2	243102	9	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr3	155853551	155853638	4538374	0	-	0.505747	(0.49,0.53]	chr3	376029	4	CDS	CDS:EXON_MRNA	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr7	92618139	92618207	8925022	0	-	0.529412	(0.49,0.53]	chr7	681144	2	CDS	CDS:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr9	112041136	112041225	10801492	0	-	0.505618	(0.49,0.53]	chr9	818287	5	UTR3	UTR3:EXON_MRNA	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chrX	53432246	53432328	19077101	0	-	0.512195	(0.49,0.53]	chrX	1622613	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B10	ENSG00000072506.14	ENST00000375304.9:ENST00000684251.1:ENST00000477706.1:ENST00000168216.11:ENST00000684692.1:ENST00000375298.4:ENST00000682365.1:ENST00000495986.2:ENST00000684503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	4.12263	4.252275	4.38192	0.00591451	0.00259709	0.0427941	0.0229695
chr8	38138815	38138885	9291778	0	+	0.457143	(0.455,0.49]	chr8	710650	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524247.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.12843	4.25226	5.37609	0.00392855	2.05373e-5	0.0322851	4.97369e-4
chr5	168517896	168517979	6369361	0	+	0.409639	(0.39,0.42]	chr5	494753	2	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.73294	4.252000000000001	4.77106	0.0190864	3.03764e-4	0.0958835	0.00472028
chr6	161166282	161166349	8053842	0	-	0.41791	(0.39,0.42]	chr6	615840	2	CDS	CDS:EXON_MRNA:INTRON	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9:ENST00000436279.1:ENST00000624499.2:ENST00000366905.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.73294	4.252000000000001	4.77106	0.0190864	3.03764e-4	0.0958835	0.00472028
chr9	91852574	91852674	10734323	0	-	0.41	(0.39,0.42]	chr9	812015	764	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.73294	4.252000000000001	4.77106	0.0190864	3.03764e-4	0.0958835	0.00472028
chr17	7577072	7577165	16105672	0	+	0.430108	(0.42,0.455]	chr17	1296962	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000577731.1:ENST00000583389.5:ENST00000578569.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	10	130	2	2.84638	4.25197	5.65756	6.99481e-6	9.65611e-11	2.25852e-4	1.31853e-8
chr11	9170777	9170874	12264129	0	-	0.350515	(0.33,0.36]	chr11	948323	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81832	4.25196	4.6856	0.0135793	3.92435e-4	0.0745701	0.00583618
chr7	93993800	93993893	8929921	0	-	0.44086	(0.42,0.455]	chr7	681453	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BET1	ENSG00000105829.13	ENST00000357520.8:ENST00000471446.1:ENST00000650276.1:ENST00000222547.8:ENST00000433727.5:ENST00000457139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.57051	4.251845	5.93318	0.0265466	5.79703e-7	0.120071	2.50873e-5
chr21	8445558	8445657	18042000	0	+	0.464646	(0.455,0.49]	chr21	1530902	57	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	390	6781	2	4.09797	4.25176	4.40555	1e-12	1e-12	2.46312e-10	2.25522e-10
chr16	81615006	81615106	15771101	0	+	0.44	(0.42,0.455]	chr16	1255471	32	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.70273	4.251685	4.80064	0.0215502	3.0479e-4	0.102904	0.00472028
chr17	49055258	49055356	16256699	0	+	0.489796	(0.455,0.49]	chr17	1317683	60	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.44026	4.25154	5.06282	1.16789e-4	8.71641e-5	0.0020505	0.00177086
chr12	6967891	6967956	13188887	0	-	0.523077	(0.49,0.53]	chr12	1032803	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000545555.2:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.8233	4.25151	4.67972	6.94757e-4	1.44192e-4	0.00876781	0.00242438
chr19	38657949	38658048	17323019	0	+	0.444444	(0.42,0.455]	chr19	1434269	93	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.19674	4.251485000000001	6.30623	0.0254904	3.37116e-8	0.117089	2.19621e-6
chr6	132814768	132814782	7406806	0	+	0.642857	(0.59,1]	chr6	567784	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	82	2	2.21052	4.251455	6.29239	0.010462	2.49631e-6	0.063428	8.6736e-5
chr7	159018829	159018927	8639481	0	+	0.571429	(0.53,0.59]	chr7	660126	8	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	3.55001	4.25117	4.95233	6.11776e-4	3.02711e-4	0.00818575	0.00439897
chr9	133153995	133154084	10879524	0	-	0.573034	(0.53,0.59]	chr9	825595	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.55001	4.25117	4.95233	6.11776e-4	3.02711e-4	0.00818575	0.00439897
chr2	216498843	216498874	2381771	0	+	0.677419	(0.59,1]	chr2	214015	1	UTR5	UTR5:EXON_MRNA	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1:ENST00000491306.6:ENST00000487233.1:ENST00000600880.5:ENST00000446558.5:ENST00000420712.1:ENST00000359681.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	1624	2	4.0006	4.251125	4.50165	2.22142e-9	3.65852e-12	2.28625e-7	7.14029e-10
chr22	41674832	41674932	18520234	0	-	0.49	(0.455,0.49]	chr22	1581350	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	110	2	4.03626	4.25112	4.46598	1.39614e-6	2.65925e-9	5.82056e-5	2.4747e-7
chr14	103921469	103921529	14797239	0	-	0.583333	(0.53,0.59]	chr14	1159833	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000553449.1:ENST00000554089.5:ENST00000554713.2:ENST00000557260.1:ENST00000554528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	103	2	4.12962	4.250865	4.37211	5.43864e-6	7.35971e-8	1.81467e-4	4.2952e-6
chr1	116399481	116399543	423905	0	+	0.467742	(0.455,0.49]	chr1	41831	2	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	3.24286	4.25085	5.25884	2.77105e-4	2.28833e-11	0.00444204	3.64879e-9
chr3	5179169	5179266	3278250	0	+	0.28866000000000003	[0,0.29]	chr3	288772	5	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.2461700000000002	4.2506699999999995	5.25517	6.06567e-4	2.33041e-5	0.00817698	5.51886e-4
chr9	137243167	137243263	10515406	0	+	0.458333	(0.455,0.49]	chr9	797249	8	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	89	2	3.99499	4.25064	4.50629	1.91791e-6	3.09017e-8	7.6073e-5	2.04921e-6
chr1	21850362	21850430	890925	0	-	0.647059	(0.59,1]	chr1	92370	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	160	2	3.82685	4.25034	4.67383	3.2985e-6	2.82961e-6	1.20344e-4	9.62519e-5
chr8	128220503	128220603	9616704	0	+	0.55	(0.53,0.59]	chr8	728791	1	EXON_SMALL	EXON_SMALL	RN7SKP226	ENSG00000201782.1	ENST00000364912.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	5	126	2	3.96539	4.25032	4.53525	2.79413e-7	3.21237e-8	1.50923e-5	2.1166e-6
chr1	160355705	160355757	496782	0	+	0.519231	(0.49,0.53]	chr1	53493	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1:ENST00000491390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.60653	4.25029	4.89405	4.50981e-4	2.57983e-4	0.00605268	0.00419998
chr1	37968043	37968134	950075	0	-	0.483516	(0.455,0.49]	chr1	100071	1	CDS	CDS:EXON_MRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.65352	4.250265	5.84701	0.00143499	5.98588e-7	0.0147046	2.85128e-5
chr1	180796715	180796814	585720	0	+	0.323232	(0.29,0.33]	chr1	60672	85	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.24387	4.250235	4.2566	0.00303129	0.00263476	0.0257942	0.0239118
chr3	156703609	156703702	3830298	0	+	0.322581	(0.29,0.33]	chr3	326448	3	CDS	CDS:EXON_MRNA	TIPARP	ENSG00000163659.13	ENST00000486483.5:ENST00000295924.12:ENST00000461166.5:ENST00000473702.5:ENST00000542783.5:ENST00000481853.5:ENST00000495891.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.24387	4.250235	4.2566	0.00303129	0.00263476	0.0257942	0.0239118
chr4	82864361	82864440	5496899	0	-	0.303797	(0.29,0.33]	chr4	440265	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5:ENST00000510167.1:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.24387	4.250235	4.2566	0.00303129	0.00263476	0.0257942	0.0239118
chr1	65601585	65601682	253318	0	+	0.391753	(0.39,0.42]	chr1	28833	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	87	2	4.16663	4.2501999999999995	4.33377	1.84729e-5	8.89243e-9	5.02409e-4	7.01268e-7
chr1	160999395	160999408	1331436	0	-	0.384615	(0.36,0.39]	chr1	136435	1	CDS	CDS:UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr1	196779161	196779258	641613	0	+	0.360825	(0.36,0.39]	chr1	64546	1	CDS	CDS:EXON_MRNA	CFHR3	ENSG00000116785.14	ENST00000367427.7:ENST00000471440.6:ENST00000617219.1:ENST00000391985.7:ENST00000367425.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr12	100204939	100204998	13038669	0	+	0.38983	(0.36,0.39]	chr12	1015255	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ACTR6	ENSG00000075089.10	ENST00000551652.5:ENST00000553038.5:ENST00000551517.5:ENST00000188312.7:ENST00000546902.5:ENST00000548180.5:ENST00000547458.5:ENST00000549977.5:ENST00000550813.5:ENST00000551440.1:ENST00000552376.5:ENST00000552064.5:ENST00000551617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr14	70342657	70342729	14689717	0	-	0.388889	(0.36,0.39]	chr14	1150422	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	COX16:SYNJ2BP-COX16	ENSG00000133983.16:ENSG00000258644.6	ENST00000389912.7:ENST00000621525.4:ENST00000557612.5:ENST00000555601.1:ENST00000617196.4:ENST00000555276.5:ENST00000617124.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr14	81487463	81487538	14732843	0	-	0.386667	(0.36,0.39]	chr14	1154169	2	CDS	CDS:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr15	44826102	44826191	15255684	0	-	0.382022	(0.36,0.39]	chr15	1202833	5	EXON_LNCRNA	EXON_LNCRNA	SORD2P	ENSG00000259479.6	ENST00000561384.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr17	771392	771461	16393948	0	-	0.362319	(0.36,0.39]	chr17	1333874	2	CDS	CDS:UTR3:EXON_MRNA	GLOD4	ENSG00000167699.13	ENST00000301329.10:ENST00000536578.5:ENST00000571073.5:ENST00000301328.9:ENST00000576239.5:ENST00000574554.5:ENST00000573137.1:ENST00000575851.5:ENST00000576419.1:ENST00000575790.5:ENST00000574581.5:ENST00000572220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr2	171965852	171965908	2208543	0	+	0.375	(0.36,0.39]	chr2	202146	2	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr3	171433528	171433628	4580586	0	-	0.38	(0.36,0.39]	chr3	379018	635	INTRON	INTRON	TNIK	ENSG00000154310.17	ENST00000436636.7:ENST00000341852.10:ENST00000284483.12:ENST00000475336.5:ENST00000357327.9:ENST00000460047.5:ENST00000488470.5:ENST00000470834.5:ENST00000465393.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr5	126817034	126817133	6202648	0	+	0.373737	(0.36,0.39]	chr5	483198	14	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr7	24537331	24537384	8180631	0	+	0.377358	(0.36,0.39]	chr7	624246	1	EXON_SMALL	EXON_SMALL	RNU6-1103P	ENSG00000206877.1	ENST00000384150.1	snRNA	snRNA	snRNA	snRNA	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chrX	41136876	41136949	18668247	0	+	0.383562	(0.36,0.39]	chrX	1591936	2	CDS	CDS:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chrX	121204435	121204531	19198103	0	-	0.364583	(0.36,0.39]	chrX	1632450	14	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	4.0322	4.24967	4.46714	0.00588589	0.00155822	0.0427941	0.0156889
chr11	123059154	123059207	12636977	0	-	0.490566	(0.49,0.53]	chr11	980711	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000524552.5:ENST00000533238.5:ENST00000526862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	143	2	4.12645	4.249575	4.3727	1.01998e-7	1.87204e-9	5.67095e-6	1.96887e-7
chr11	900935	900980	12228634	0	-	0.6	(0.59,1]	chr11	943976	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	24	2	4.2353	4.24942	4.26354	0.0165254	0.0134233	0.0873033	0.0743429
chr17	44374658	44374709	16558011	0	-	0.72549	(0.59,1]	chr17	1359420	1	CDS	CDS:EXON_MRNA:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.2353	4.24942	4.26354	0.0165254	0.0134233	0.0873033	0.0743429
chr17	45024432	45024532	16560950	0	-	0.62	(0.59,1]	chr17	1359990	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DCAKD	ENSG00000172992.12	ENST00000452796.6:ENST00000342350.9:ENST00000651974.1:ENST00000310604.8:ENST00000614054.4:ENST00000588499.5:ENST00000593094.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.2353	4.24942	4.26354	0.0165254	0.0134233	0.0873033	0.0743429
chr19	16076942	16077015	17247086	0	+	0.726027	(0.59,1]	chr19	1422925	3	SS5_PROX	SS5_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000587201.6:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.2353	4.24942	4.26354	0.0165254	0.0134233	0.0873033	0.0743429
chrX	47228768	47228842	18687068	0	+	0.689189	(0.59,1]	chrX	1593352	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000462827.2:ENST00000520141.5:ENST00000462483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.2353	4.24942	4.26354	0.0165254	0.0134233	0.0873033	0.0743429
chr17	45104859	45104911	16237761	0	+	0.423077	(0.42,0.455]	chr17	1315026	1	CDS	CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000590114.6:ENST00000592654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr2	15623465	15623523	1650930	0	+	0.431034	(0.42,0.455]	chr2	162963	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr4	153308254	153308346	5740739	0	-	0.423913	(0.42,0.455]	chr4	453553	6	EXON_PSEUDO	EXON_PSEUDO	ANXA2P1	ENSG00000213406.3	ENST00000505539.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr6	72684858	72684958	7230698	0	+	0.43	(0.42,0.455]	chr6	557872	64	INTRON	INTRON	KCNQ5	ENSG00000185760.17	ENST00000342056.6:ENST00000355194.8:ENST00000355635.7:ENST00000402622.6:ENST00000403813.6:ENST00000414165.6:ENST00000628967.2:ENST00000370398.6:ENST00000370392.5:ENST00000629977.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr6	87621353	87621420	7270622	0	+	0.432836	(0.42,0.455]	chr6	560497	1	CDS	CDS:EXON_MRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr7	152181602	152181701	9135377	0	-	0.434343	(0.42,0.455]	chr7	698409	10	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr8	47858575	47858635	9816362	0	-	0.433333	(0.42,0.455]	chr8	742671	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr9	107170555	107170654	10785611	0	-	0.454545	(0.42,0.455]	chr9	816377	11	EXON_PSEUDO	EXON_PSEUDO	RP11-417L14.1	ENSG00000226535.1	ENST00000415694.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chrX	37727907	37727998	18656808	0	+	0.450549	(0.42,0.455]	chrX	1591367	4	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.8515	4.24887	4.64624	0.0119089	8.75333e-4	0.0686664	0.0101169
chr3	185495234	185495315	4625858	0	-	0.567901	(0.53,0.59]	chr3	382049	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3:ENST00000467061.1:ENST00000467520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.29875	4.24879	5.19883	0.00191422	8.7034e-5	0.018324	0.00177086
chrX	48914394	48914482	19063613	0	-	0.556818	(0.53,0.59]	chrX	1620592	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000485431.1:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.29875	4.24879	5.19883	0.00191422	8.7034e-5	0.018324	0.00177086
chr3	47916138	47916232	4164420	0	-	0.56383	(0.53,0.59]	chr3	348579	3	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.5393	4.248775	4.95825	6.46017e-4	2.87508e-4	0.00799743	0.00457439
chr17	51178211	51178310	16587715	0	-	0.40404	(0.39,0.42]	chr17	1363528	9	UTR3	UTR3:EXON_MRNA	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	4.09419	4.24869	4.40319	2.95839e-5	3.72195e-6	7.34143e-4	1.21063e-4
chr1	27907180	27907231	910934	0	-	0.411765	(0.39,0.42]	chr1	95257	1	CDS	CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr1	171683407	171683501	1368499	0	-	0.414894	(0.39,0.42]	chr1	139450	4	EXON_PSEUDO	EXON_PSEUDO	RPL4P3	ENSG00000230364.1	ENST00000428881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr1	207506713	207506813	687428	0	+	0.41	(0.39,0.42]	chr1	69688	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CR1	ENSG00000203710.12	ENST00000400960.7:ENST00000367050.8:ENST00000367049.9:ENST00000530487.5:ENST00000367051.6:ENST00000367053.6:ENST00000367052.6:ENST00000534202.5:ENST00000529814.1:ENST00000450439.5:ENST00000436595.1:ENST00000434033.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr1	219211491	219211559	719908	0	+	0.397059	(0.39,0.42]	chr1	72456	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LYPLAL1	ENSG00000143353.12	ENST00000460522.5:ENST00000366927.3:ENST00000366928.10:ENST00000477938.5:ENST00000463964.5:ENST00000483635.5:ENST00000474379.5:ENST00000469590.5:ENST00000478794.5:ENST00000475724.1:ENST00000481007.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr11	9588898	9588997	11793800	0	+	0.40404	(0.39,0.42]	chr11	903118	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr18	68697931	68698031	17164696	0	-	0.4	(0.39,0.42]	chr18	1408818	1	CDS	CDS:UTR3:EXON_MRNA	TMX3	ENSG00000166479.10	ENST00000299608.7:ENST00000564631.5:ENST00000569053.5:ENST00000443099.6:ENST00000562706.5:ENST00000565918.5:ENST00000564008.5:ENST00000580785.1:ENST00000569982.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr3	129277511	129277598	3730639	0	+	0.413793	(0.39,0.42]	chr3	318988	2	UTR3	UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr5	180561310	180561409	6416396	0	+	0.393939	(0.39,0.42]	chr5	499432	75	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr6	151468914	151469010	7490676	0	+	0.40625	(0.39,0.42]	chr6	572409	7	CDS	CDS:EXON_MRNA	ARMT1	ENSG00000146476.11	ENST00000545879.5:ENST00000367294.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.93996	4.248595	4.55723	0.00841622	0.00117753	0.054565	0.0127276
chr14	92162635	92162734	14458447	0	+	0.353535	(0.33,0.36]	chr14	1128971	10	UTR3	UTR3:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1284	4.24859	4.36878	0.00407303	0.0021194	0.0324137	0.0198008
chr15	65889124	65889223	14982340	0	+	0.353535	(0.33,0.36]	chr15	1177744	14	UTR3	UTR3:EXON_MRNA	RAB11A	ENSG00000103769.10	ENST00000261890.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1284	4.24859	4.36878	0.00407303	0.0021194	0.0324137	0.0198008
chr17	67743759	67743859	16332077	0	+	0.34	(0.33,0.36]	chr17	1324902	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000583108.5:ENST00000583021.1:ENST00000584032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.1284	4.24859	4.36878	0.00407303	0.0021194	0.0324137	0.0198008
chr2	205996307	205996406	3131947	0	-	0.343434	(0.33,0.36]	chr2	276879	27	UTR3	UTR3:EXON_MRNA	INO80D	ENSG00000114933.16	ENST00000403263.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1284	4.24859	4.36878	0.00407303	0.0021194	0.0324137	0.0198008
chr3	149077943	149078043	4509560	0	-	0.35	(0.33,0.36]	chr3	374279	15	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1284	4.24859	4.36878	0.00407303	0.0021194	0.0324137	0.0198008
chr9	83660732	83660828	10710351	0	-	0.34375	(0.33,0.36]	chr9	810178	9	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.1284	4.24859	4.36878	0.00407303	0.0021194	0.0324137	0.0198008
chr1	168246333	168246432	526532	0	+	0.333333	(0.33,0.36]	chr1	56538	39	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.9738	4.24823	4.52266	8.34989e-4	5.94302e-5	0.0102956	0.00119141
chr11	14479568	14479641	12281781	0	-	0.356164	(0.33,0.36]	chr11	949631	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.9738	4.24823	4.52266	8.34989e-4	5.94302e-5	0.0102956	0.00119141
chr11	108467270	108467370	12588776	0	-	0.55	(0.53,0.59]	chr11	976248	4	SS5_PROX	SS5_PROX:INTRON	C11orf65	ENSG00000166323.13	ENST00000525729.5:ENST00000615746.4:ENST00000393084.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.65894	4.248125	5.8373100000000004	0.0193255	2.06883e-6	0.0943643	7.35008e-5
chr19	12894132	12894225	17238081	0	+	0.451613	(0.42,0.455]	chr19	1420989	1	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	GCDH:RPS6P25	ENSG00000105607.13:ENSG00000240616.1	ENST00000222214.10:ENST00000591470.5:ENST00000421816.6:ENST00000589039.5:ENST00000590530.5:ENST00000588905.5:ENST00000585420.5:ENST00000591043.1:ENST00000464444.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	4	83	2	3.99165	4.247885	4.50412	1.67683e-6	1.91751e-7	6.81279e-5	9.81202e-6
chr1	153974596	153974678	1300484	0	-	0.451219	(0.42,0.455]	chr1	130777	5	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-422P24.15:JTB	ENSG00000285779.1:ENSG00000143543.15	ENST00000648921.1:ENST00000271843.9:ENST00000368589.5:ENST00000356648.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	3.91097	4.2478549999999995	4.58474	8.75299e-5	1.29366e-8	0.0016272	1.05882e-6
chr1	55043842	55043926	203634	0	+	0.666667	(0.59,1]	chr1	26118	1	CDS	CDS:UTR5:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	181	2	3.33448	4.247835	5.16119	1.82788e-5	1.52216e-7	4.52473e-4	9.04217e-6
chr12	49185821	49185921	13324025	0	-	0.52	(0.49,0.53]	chr12	1045767	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	192	2	4.03901	4.24767	4.45633	1.92746e-8	7.8843e-11	1.49164e-6	1.10514e-8
chr11	2397308	2397397	11764987	0	+	0.438202	(0.42,0.455]	chr11	900180	6	UTR3	UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000531840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.11785	4.247669999999999	6.37749	0.0154862	1.88677e-8	0.0836691	1.34393e-6
chr7	73570880	73570972	8854569	0	-	0.48913	(0.455,0.49]	chr7	676026	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000488915.1:ENST00000426966.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	3.73412	4.2473	4.76048	3.99985e-4	1.26741e-5	0.00588767	3.34022e-4
chr8	33011889	33011989	9271679	0	+	0.41	(0.39,0.42]	chr8	709692	152	INTRON	INTRON	RP11-11N9.4	ENSG00000247134.7	ENST00000659524.1:ENST00000666042.1:ENST00000664284.1:ENST00000666659.1:ENST00000657565.1:ENST00000670899.1:ENST00000666221.1:ENST00000671310.1:ENST00000655535.1:ENST00000665465.1:ENST00000658837.1:ENST00000500843.2:ENST00000520819.6	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	3.60131	4.246745	4.89218	4.60576e-4	1.6518e-4	0.00611208	0.0029267300000000002
chr10	87754289	87754388	11607870	0	-	0.434343	(0.42,0.455]	chr10	884001	29	UTR3	UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	4.24133	4.246675	4.25202	0.00326918	1.07036e-5	0.0282494	2.92107e-4
chr1	65570472	65570554	253001	0	+	0.329268	(0.29,0.33]	chr1	28803	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	4.24387	4.2466	4.24933	0.00263476	1.02924e-5	0.0239118	2.83837e-4
chr17	35674175	35674248	16206998	0	+	0.506849	(0.49,0.53]	chr17	1309119	1	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.72252	4.24658	5.77064	0.0161474	1.94063e-6	0.0860154	6.9799e-5
chr1	145298286	145298373	1266168	0	-	0.448276	(0.42,0.455]	chr1	124161	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF20	ENSG00000162825.16	ENST00000392971.6:ENST00000369373.9:ENST00000622803.4:ENST00000594479.7:ENST00000620821.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.0898	4.2462800000000005	4.40276	0.00698074	0.0017618	0.0473262	0.0180053
chr16	69335072	69335164	15994039	0	-	0.445652	(0.42,0.455]	chr16	1284083	7	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	COG8:RP11-343C2.9	ENSG00000213380.16:ENSG00000260371.1	ENST00000562595.5:ENST00000306875.10:ENST00000562081.2:ENST00000563634.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.0898	4.2462800000000005	4.40276	0.00698074	0.0017618	0.0473262	0.0180053
chr9	36773533	36773633	10252061	0	+	0.45	(0.42,0.455]	chr9	771533	1	SS5_PROX	SS5_PROX:INTRON	RP11-344B23.3	ENSG00000288571.1	ENST00000657370.1:ENST00000656722.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	4.0898	4.2462800000000005	4.40276	0.00698074	0.0017618	0.0473262	0.0180053
chr2	96861363	96861455	2792235	0	-	0.652174	(0.59,1]	chr2	249223	8	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.69477	4.246155	5.79754	0.020208	3.712e-5	0.0978331	8.06532e-4
chr1	111182798	111182877	406199	0	+	0.392405	(0.39,0.42]	chr1	39902	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1:ENST00000483427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	3.44923	4.24587	5.04251	0.00105208	2.52401e-8	0.0123035	1.72157e-6
chr1	220103446	220103504	720089	0	+	0.448276	(0.42,0.455]	chr1	72506	1	CDS	CDS:EXON_MRNA	IARS2	ENSG00000067704.10	ENST00000366922.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr10	97223949	97224047	11644395	0	-	0.428571	(0.42,0.455]	chr10	887008	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGAP19-SLIT1:ARHGAP19	ENSG00000269891.2:ENSG00000213390.11	ENST00000479633.2:ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr16	1994178	1994275	15490023	0	+	0.443299	(0.42,0.455]	chr16	1226582	7	UTR3	UTR3:EXON_MRNA	SYNGR3	ENSG00000127561.15	ENST00000248121.7:ENST00000618464.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr17	15465661	15465761	16456273	0	-	0.44	(0.42,0.455]	chr17	1343279	122	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr2	42350921	42351020	2616601	0	-	0.454545	(0.42,0.455]	chr2	235508	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	COX7A2L	ENSG00000115944.15	ENST00000468711.5:ENST00000378669.5:ENST00000234301.3:ENST00000482463.5:ENST00000464443.5:ENST00000607768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr2	120141203	120141303	2029753	0	+	0.44	(0.42,0.455]	chr2	191966	91	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000452780.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr3	98577166	98577266	4319507	0	-	0.43	(0.42,0.455]	chr3	360247	32	INTRON	INTRON	RP11-227H4.8:RP11-227H4.9	ENSG00000285635.1:ENSG00000286602.1	ENST00000512905.6:ENST00000654582.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr4	165337926	165337937	5206910	0	+	0.454545	(0.42,0.455]	chr4	420264	1	CDS_START	CDS_START:CDS:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr8	123114290	123114390	9587839	0	+	0.43	(0.42,0.455]	chr8	727083	43	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000521676.5:ENST00000524307.5:ENST00000518805.5:ENST00000518577.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.24133	4.245805	4.25028	0.00406761	0.00326918	0.032143	0.0282494
chr19	23827161	23827259	17276785	0	+	0.510204	(0.49,0.53]	chr19	1427763	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	3	95	2	3.51981	4.245555	4.9713	6.88328e-4	4.61127e-10	0.00876781	5.28165e-8
chr7	73573937	73573992	8854609	0	-	0.672727	(0.59,1]	chr7	676049	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5:ENST00000465279.5:ENST00000496056.5:ENST00000469518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.68392	4.245505	5.80709	0.0202468	4.94887e-5	0.0984041	0.00112479
chr14	20476501	20476601	14171377	0	+	0.46	(0.455,0.49]	chr14	1109154	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	4.16204	4.2454350000000005	4.32883	1.83061e-5	6.31002e-6	4.99708e-4	1.88287e-4
chr6	52273828	52273916	7736688	0	-	0.454545	(0.42,0.455]	chr6	593721	2	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	3.98629	4.245205	4.50412	2.11853e-6	1.67683e-6	7.50523e-5	6.81279e-5
chr10	69384855	69384915	11096682	0	+	0.616667	(0.59,1]	chr10	843785	2	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.11672	4.244975	4.37323	0.0222273	0.00990413	0.105595	0.061536
chr11	2916621	2916680	11769345	0	+	0.677966	(0.59,1]	chr11	900380	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000467719.5:ENST00000463571.5:ENST00000498209.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.11672	4.244975	4.37323	0.0222273	0.00990413	0.105595	0.061536
chr16	16114765	16114842	15568478	0	+	0.636364	(0.59,1]	chr16	1232814	1	CDS	CDS:UTR3:EXON_MRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000574761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.11672	4.244975	4.37323	0.0222273	0.00990413	0.105595	0.061536
chr19	7622529	7622595	17447021	0	-	0.606061	(0.59,1]	chr19	1457876	1	CDS	CDS:EXON_MRNA	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	4.11672	4.244975	4.37323	0.0222273	0.00990413	0.105595	0.061536
chr2	32277903	32277987	1711971	0	+	0.607143	(0.59,1]	chr2	167928	1	UTR5	UTR5:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.11672	4.244975	4.37323	0.0222273	0.00990413	0.105595	0.061536
chr8	47858848	47858917	9816366	0	-	0.652174	(0.59,1]	chr8	742675	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.11672	4.244975	4.37323	0.0222273	0.00990413	0.105595	0.061536
chr20	35703696	35703794	17955503	0	-	0.336735	(0.33,0.36]	chr20	1521211	25	UTR3	UTR3:EXON_MRNA	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.72365	4.24495	4.76625	3.84608e-4	3.19155e-4	0.00531017	0.00491578
chr3	101576855	101576947	4331344	0	-	0.467391	(0.455,0.49]	chr3	361271	5	EXON_PSEUDO	EXON_PSEUDO	RP11-234A1.1	ENSG00000242299.1	ENST00000496294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	166	2	3.68379	4.2449200000000005	4.80605	7.84606e-9	1.63758e-9	6.29421e-7	1.75589e-7
chr19	6534874	6534966	17213525	0	+	0.684783	(0.59,1]	chr19	1415922	4	CDS	CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	2.9501	4.244895	5.53969	1.29608e-4	9.06824e-5	0.00223885	0.00182992
chr15	72375872	72375972	15369774	0	-	0.64	(0.59,1]	chr15	1214494	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2:ENST00000567213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr16	56834127	56834190	15680462	0	+	0.650794	(0.59,1]	chr16	1246661	1	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr16	88811899	88811937	16075196	0	-	0.815789	(0.59,1]	chr16	1291814	1	UTR5	UTR5:EXON_MRNA	APRT	ENSG00000198931.11	ENST00000378364.8:ENST00000567713.5:ENST00000568319.5:ENST00000567391.5:ENST00000426324.6:ENST00000563655.5:ENST00000564858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr17	37512869	37512959	16214250	0	+	0.655556	(0.59,1]	chr17	1310070	1	UTR3	UTR3:EXON_MRNA	DUSP14	ENSG00000276023.5	ENST00000617516.5:ENST00000613659.1:ENST00000614411.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr17	81860547	81860624	16709685	0	-	0.805195	(0.59,1]	chr17	1377728	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680416.1:ENST00000575069.6:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000680400.1:ENST00000574914.2:ENST00000681566.1:ENST00000680076.1:ENST00000466567.3:ENST00000679396.1:ENST00000680208.1:ENST00000439918.7:ENST00000681031.1:ENST00000679455.1:ENST00000680259.1:ENST00000681760.1:ENST00000681933.1:ENST00000680732.1:ENST00000573778.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr6	34773445	34773470	7125659	0	+	0.68	(0.59,1]	chr6	548388	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr9	83707579	83707679	10710832	0	-	0.76	(0.59,1]	chr9	810235	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	4.14483	4.24485	4.34487	0.0183207	0.0123678	0.0945306	0.0705839
chr4	73092107	73092203	5466132	0	-	0.40625	(0.39,0.42]	chr4	437754	16	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.81106	4.24481	5.67856	6.4431e-4	1.29189e-6	0.00799617	5.48279e-5
chr2	70088814	70088911	1878489	0	+	0.391753	(0.39,0.42]	chr2	177398	1	UTR3	UTR3:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	13	227	2	4.17442	4.244714999999999	4.31501	2.22168e-10	2.5966e-11	3.05697e-8	4.07516e-9
chr10	71816297	71816392	11563208	0	-	0.347368	(0.33,0.36]	chr10	879958	1	UTR3	UTR3:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.97592	4.24447	5.51302	4.1482e-4	2.54705e-10	0.00607555	3.10706e-8
chrX	115704026	115704120	18834863	0	+	0.542553	(0.53,0.59]	chrX	1604659	14	EXON_PSEUDO	EXON_PSEUDO	EEF1GP5	ENSG00000234785.1	ENST00000434365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	70	2	3.55001	4.24442	4.93883	6.11776e-4	8.67024e-8	0.00818575	4.94425e-6
chr6	53275175	53275261	7740238	0	-	0.418605	(0.39,0.42]	chr6	594357	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	331	2	4.06443	4.24427	4.42411	1.30586e-11	1.33993e-12	2.20198e-9	3.19857e-10
chr2	230875713	230875808	2422221	0	+	0.578947	(0.53,0.59]	chr2	218110	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITM2C	ENSG00000135916.16	ENST00000457215.5:ENST00000541852.5:ENST00000326427.11:ENST00000335005.10:ENST00000326407.10:ENST00000543957.5:ENST00000409704.6:ENST00000418408.2:ENST00000492029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	4.04528	4.243914999999999	4.44255	4.28524e-5	3.41603e-6	9.98851e-4	1.12474e-4
chr7	158733914	158734011	9159307	0	-	0.556701	(0.53,0.59]	chr7	699685	31	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	4.04528	4.243914999999999	4.44255	4.28524e-5	3.41603e-6	9.98851e-4	1.12474e-4
chr21	29212360	29212460	18088722	0	+	0.48	(0.455,0.49]	chr21	1533636	177	INTRON	INTRON	LINC00189:BACH1	ENSG00000215533.8:ENSG00000156273.16	ENST00000447125.5:ENST00000420364.1:ENST00000431661.1:ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	43	2	3.81275	4.24391	4.67507	0.0138827	5.16001e-7	0.0760883	2.27446e-5
chr6	37045024	37045106	7136237	0	+	0.585366	(0.53,0.59]	chr6	549924	3	EXON_PSEUDO	EXON_PSEUDO	COX6A1P2	ENSG00000226976.3	ENST00000620597.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	122	2	3.43029	4.243895	5.0575	1.20772e-6	3.24657e-8	4.6869e-5	2.34482e-6
chr1	52373180	52373280	1018688	0	-	0.58	(0.53,0.59]	chr1	105563	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.81839	4.243875	4.66936	0.0184435	0.00103174	0.0945306	0.0121443
chr1	151263913	151263970	471354	0	+	0.561404	(0.53,0.59]	chr1	48087	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5:ENST00000469786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.81839	4.243875	4.66936	0.0184435	0.00103174	0.0945306	0.0121443
chr16	75709720	75709815	16039566	0	-	0.547368	(0.53,0.59]	chr16	1288419	8	EXON_PSEUDO	EXON_PSEUDO	ATP5PBP7	ENSG00000261424.1	ENST00000567330.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	3.81839	4.243875	4.66936	0.0184435	0.00103174	0.0945306	0.0121443
chr10	128107736	128107835	11745101	0	-	0.535354	(0.53,0.59]	chr10	896083	53	CDS	CDS:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr11	214848	214936	11755968	0	+	0.556818	(0.53,0.59]	chr11	897559	5	UTR3	UTR3:EXON_MRNA	RIC8A	ENSG00000177963.15	ENST00000526104.6:ENST00000325207.9:ENST00000527696.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr12	57456654	57456748	12902418	0	+	0.56383	(0.53,0.59]	chr12	1005254	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	INHBE	ENSG00000139269.3	ENST00000551553.1:ENST00000547970.1:ENST00000266646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr14	76968682	76968774	14413237	0	+	0.532609	(0.53,0.59]	chr14	1126544	1	EXON_PSEUDO	EXON_PSEUDO	RP11-7F17.1	ENSG00000243225.2	ENST00000488511.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr16	19872094	19872187	15879924	0	-	0.580645	(0.53,0.59]	chr16	1269839	4	CDS	CDS:EXON_MRNA	GPRC5B	ENSG00000167191.12	ENST00000300571.7:ENST00000535671.5:ENST00000569479.5:ENST00000569847.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr17	16433573	16433635	16142017	0	+	0.548387	(0.53,0.59]	chr17	1300730	1	CDS	CDS:EXON_MRNA:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000577277.6:ENST00000581560.5:ENST00000580788.6:ENST00000577865.2:ENST00000475513.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr19	6731198	6731282	17443985	0	-	0.583333	(0.53,0.59]	chr19	1457412	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPR108	ENSG00000125734.15	ENST00000264080.11:ENST00000594500.5:ENST00000537722.8:ENST00000598626.5:ENST00000594034.5:ENST00000595908.5:ENST00000430424.8:ENST00000597706.5:ENST00000598955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr2	85346019	85346094	2770253	0	-	0.533333	(0.53,0.59]	chr2	245688	3	CDS	CDS:EXON_MRNA	RETSAT	ENSG00000042445.14	ENST00000295802.9:ENST00000429806.5:ENST00000449375.1:ENST00000438611.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr22	43171818	43171900	18527907	0	-	0.536585	(0.53,0.59]	chr22	1582354	1	CDS	CDS:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr5	140566939	140567028	6255374	0	+	0.573034	(0.53,0.59]	chr5	487692	3	UTR3	UTR3:UTR5:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000623481.3:ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr6	27814353	27814453	7649608	0	-	0.56	(0.53,0.59]	chr6	582805	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC14	ENSG00000276368.2	ENST00000333151.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr6	71585115	71585214	7224835	0	+	0.545455	(0.53,0.59]	chr6	557618	5	EXON_PSEUDO	EXON_PSEUDO	KRT19P1	ENSG00000218014.1	ENST00000405746.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr7	128975818	128975876	9060380	0	-	0.534483	(0.53,0.59]	chr7	691785	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chrX	101407709	101407803	19151794	0	-	0.574468	(0.53,0.59]	chrX	1628708	1	CDS	CDS:EXON_MRNA	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.82407	4.243774999999999	4.66348	0.0179666	0.00107799	0.0918323	0.0118238
chr22	37849449	37849482	18364379	0	+	0.424242	(0.42,0.455]	chr22	1562139	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	105	2	3.70693	4.24374	4.78055	1.87156e-6	2.69619e-9	7.50901e-5	2.5064e-7
chr16	173225	173304	15480732	0	+	0.696203	(0.59,1]	chr16	1224196	1	CDS	CDS:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1:ENST00000484216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	51	2075	2	3.7467800000000002	4.24372	4.74066	2.00538e-9	1.17417e-12	1.94237e-7	2.8517800000000003e-10
chr10	46010910	46011009	11470979	0	-	0.474747	(0.455,0.49]	chr10	874843	8	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.73589	4.24297	4.75005	2.30579e-4	2.8854e-7	0.00382267	1.38392e-5
chr18	3253888	3253969	16729717	0	+	0.469136	(0.455,0.49]	chr18	1380094	1	CDS	CDS:EXON_MRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000578562.6:ENST00000536605.1:ENST00000580887.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.73589	4.24297	4.75005	2.30579e-4	2.8854e-7	0.00382267	1.38392e-5
chr21	43774101	43774201	18273571	0	-	0.5	(0.49,0.53]	chr21	1549767	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSTB	ENSG00000160213.9	ENST00000639959.1:ENST00000640406.1:ENST00000480147.3:ENST00000675996.1:ENST00000291568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	165	2	4.12703	4.242955	4.35888	7.00977e-9	2.14131e-9	6.24904e-7	2.04732e-7
chr19	4492431	4492527	17206791	0	+	0.447917	(0.42,0.455]	chr19	1414889	2	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.37329	4.242735	5.11218	0.00136107	6.01815e-5	0.0141115	0.00130886
chr2	65265042	65265108	1854338	0	+	0.454545	(0.42,0.455]	chr2	175976	1	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	4.14466	4.24269	4.34072	5.95085e-7	1.30212e-7	2.84227e-5	7.01492e-6
chr7	92613849	92613948	8924978	0	-	0.434343	(0.42,0.455]	chr7	681136	91	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	6	105	2	3.70516	4.24269	4.78022	1.92868e-7	1.03014e-7	1.1037e-5	5.71831e-6
chr6	122458600	122458681	7923875	0	-	0.469136	(0.455,0.49]	chr6	606846	2	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.85172	4.24252	5.63332	0.010864	4.15159e-6	0.0643837	1.32627e-4
chrX	49600174	49600258	18695302	0	+	0.511905	(0.49,0.53]	chrX	1595069	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE1	ENSG00000205777.18	ENST00000381709.6:ENST00000381700.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	110	2	3.86065	4.242435	4.62422	5.46336e-7	1.16248e-8	2.66561e-5	8.81286e-7
chr4	108655563	108655657	5038446	0	+	0.425532	(0.42,0.455]	chr4	409856	1	CDS	CDS:EXON_MRNA:INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000510556.1:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	3.79881	4.24237	4.68593	1.65328e-4	4.87807e-7	0.0029267300000000002	2.16171e-5
chr1	230246062	230246150	749457	0	+	0.5	(0.49,0.53]	chr1	76039	1	CDS	CDS:EXON_MRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.92528	4.242285	4.55929	0.00116196	3.34795e-6	0.0130851	1.10631e-4
chr7	159018634	159018731	8639479	0	+	0.546392	(0.53,0.59]	chr7	660126	6	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	1	35	2	3.62204	4.24218	4.86232	4.57805e-4	4.3021e-4	0.00620274	0.00608573
chr15	76285687	76285738	15382151	0	-	0.392157	(0.39,0.42]	chr15	1216358	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000560816.5:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.95786	4.24206	5.52626	0.00138212	7.67816e-6	0.0149186	2.20857e-4
chr2	46902567	46902667	2629808	0	-	0.37	(0.36,0.39]	chr2	236786	8	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.75007	4.241765	4.73346	3.2963e-4	2.12157e-4	0.00504024	0.00329275
chr7	32868562	32868659	8759792	0	-	0.42268	(0.42,0.455]	chr7	668168	5	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.11	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.62315	4.241765	4.86038	4.234e-4	3.34791e-4	0.00613535	0.00472923
chr20	17517028	17517121	17717070	0	+	0.430108	(0.42,0.455]	chr20	1495312	3	EXON_PSEUDO	EXON_PSEUDO	RPS27AP2	ENSG00000232333.1	ENST00000457576.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	29	2	3.52659	4.241595	4.9566	6.87022e-4	2.10615e-4	0.00876781	0.00327655
chr17	49044990	49045065	16256591	0	+	0.506667	(0.49,0.53]	chr17	1317666	1	CDS	CDS:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	3.31729	4.241429999999999	5.16557	6.36135e-5	7.87963e-6	0.00136069	2.25573e-4
chr1	21887589	21887674	891363	0	-	0.564706	(0.53,0.59]	chr1	92583	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000412328.5:ENST00000374673.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	3.43955	4.241265	5.04298	1.91383e-4	3.45609e-6	0.0032874	1.13431e-4
chr1	95191549	95191622	362101	0	+	0.369863	(0.36,0.39]	chr1	35681	1	CDS	CDS:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.46497	4.241265	5.01756	0.00105709	2.8655e-8	0.0123035	1.91701e-6
chr2	157299606	157299665	2152525	0	+	0.491525	(0.49,0.53]	chr2	198601	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.6129	4.2412399999999995	5.86958	0.0052746	7.54524e-7	0.0389109	3.49213e-5
chr5	139480789	139480843	6867260	0	-	0.555556	(0.53,0.59]	chr5	525708	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000651565.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000502825.1:ENST00000515507.5:ENST00000511850.1:ENST00000503838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.02054	4.24109	5.46164	0.00577011	2.11519e-5	0.0426551	5.06522e-4
chr12	56311278	56311346	13350264	0	-	0.529412	(0.49,0.53]	chr12	1051099	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-977G19.10:CNPY2	ENSG00000144785.8:ENSG00000257727.6	ENST00000549318.5:ENST00000547423.5:ENST00000548360.1:ENST00000546466.5:ENST00000273308.9:ENST00000546937.5:ENST00000553191.1:ENST00000551475.5:ENST00000551286.1:ENST00000551720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.56183	4.240915	5.92	0.0261296	6.89283e-7	0.118976	2.91313e-5
chr14	54432107	54432163	14635544	0	-	0.482143	(0.455,0.49]	chr14	1146408	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	4.1185600000000004	4.240815	4.36307	0.00218641	2.49433e-5	0.0208941	5.8178e-4
chr1	2400856	2400935	7587	0	+	0.493671	(0.49,0.53]	chr1	1710	1	CDS	CDS:EXON_MRNA	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000378512.5:ENST00000443438.5:ENST00000488353.2	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.46958	4.2406	6.01162	0.00344146	3.55916e-7	0.0292838	1.64926e-5
chr1	25402726	25402746	904200	0	-	0.55	(0.53,0.59]	chr1	94039	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1:ENST00000495048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.61294	4.240584999999999	4.86823	0.0310038	4.35895e-4	0.130016	0.00623608
chr16	88875916	88876012	16075711	0	-	0.5625	(0.53,0.59]	chr16	1291936	12	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.61294	4.240584999999999	4.86823	0.0310038	4.35895e-4	0.130016	0.00623608
chr9	134339634	134339734	10505689	0	+	0.54	(0.53,0.59]	chr9	794894	126	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.61294	4.240584999999999	4.86823	0.0310038	4.35895e-4	0.130016	0.00623608
chr1	145849628	145849712	1269172	0	-	0.559524	(0.53,0.59]	chr1	125159	2	CDS	CDS:EXON_MRNA	PIAS3	ENSG00000131788.16	ENST00000393045.7:ENST00000369298.5:ENST00000475261.1:ENST00000472114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr11	62691308	62691395	12410305	0	-	0.586207	(0.53,0.59]	chr11	961428	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	BSCL2:HNRNPUL2-BSCL2	ENSG00000168000.16:ENSG00000234857.2	ENST00000683892.1:ENST00000684475.1:ENST00000684285.1:ENST00000682555.1:ENST00000682262.1:ENST00000684115.1:ENST00000683025.1:ENST00000449636.6:ENST00000683846.1:ENST00000403734.2:ENST00000679883.1:ENST00000405837.5:ENST00000683296.1:ENST00000360796.10:ENST00000278893.11:ENST00000403098.6:ENST00000684067.1:ENST00000684258.1:ENST00000683494.1:ENST00000682003.1:ENST00000524862.6:ENST00000407022.7:ENST00000403550.5:ENST00000301781.10:ENST00000421906.5:ENST00000682794.1:ENST00000683368.1:ENST00000683193.1:ENST00000682223.1:ENST00000463679.6:ENST00000684609.1:ENST00000684720.1:ENST00000682644.1:ENST00000412351.2:ENST00000468505.5:ENST00000532115.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr12	55971111	55971179	12896930	0	+	0.544118	(0.53,0.59]	chr12	1003801	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK2	ENSG00000123374.11	ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000556656.5:ENST00000554545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr16	16285455	16285506	15569367	0	+	0.588235	(0.53,0.59]	chr16	1233062	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000678148.1:ENST00000574157.5:ENST00000572932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr19	5218476	5218534	17435054	0	-	0.551724	(0.53,0.59]	chr19	1455682	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5:ENST00000592099.5:ENST00000588012.5:ENST00000262963.10:ENST00000589851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr19	40740925	40740996	17567319	0	-	0.56338	(0.53,0.59]	chr19	1476581	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000596940.5:ENST00000598485.6:ENST00000594163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr21	15121458	15121558	18169124	0	-	0.55	(0.53,0.59]	chr21	1542716	52	INTRON	INTRON	AF222684.1	ENSG00000288536.1	ENST00000674143.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr22	29341586	29341673	18464897	0	-	0.54023	(0.53,0.59]	chr22	1575106	2	CDS	CDS:EXON_MRNA	AP1B1	ENSG00000100280.17	ENST00000357586.7:ENST00000432560.6:ENST00000405198.6:ENST00000317368.11:ENST00000421126.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr7	128854843	128854912	8522525	0	+	0.550725	(0.53,0.59]	chr7	650457	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chrX	154403107	154403190	19278303	0	-	0.566265	(0.53,0.59]	chrX	1638395	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	DNASE1L1	ENSG00000013563.14	ENST00000369807.6:ENST00000369809.5:ENST00000393638.5:ENST00000014935.7:ENST00000369808.7:ENST00000309585.9:ENST00000497242.1:ENST00000447892.1:ENST00000451865.5:ENST00000412184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.61856	4.24044	4.86232	0.0303021	4.57805e-4	0.129773	0.00608573
chr11	34090528	34090603	11905390	0	+	0.44	(0.42,0.455]	chr11	909559	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	292	2	4.21222	4.2401599999999995	4.2681	2.81198e-11	1.76528e-11	4.83812e-9	2.89823e-9
chr5	74767175	74767267	6036709	0	+	0.554348	(0.53,0.59]	chr5	473521	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NSA2	ENSG00000164346.10	ENST00000296802.9:ENST00000514918.5:ENST00000610426.5:ENST00000513356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	81	2	3.81779	4.23986	4.66193	7.68216e-6	7.20737e-7	2.4235e-4	3.019e-5
chr7	22813033	22813096	8722505	0	-	0.492063	(0.49,0.53]	chr7	665821	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TOMM7	ENSG00000196683.11	ENST00000463284.2:ENST00000405021.7:ENST00000483581.1:ENST00000372879.8:ENST00000358435.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.99849	4.239835	5.48118	0.00630123	1.24248e-5	0.0445415	3.28918e-4
chr8	21999233	21999305	9222069	0	+	0.513889	(0.49,0.53]	chr8	705032	3	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000517551.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.99849	4.239835	5.48118	0.00630123	1.24248e-5	0.0445415	3.28918e-4
chr22	36512459	36512530	18499609	0	-	0.549296	(0.53,0.59]	chr22	1578417	1	CDS	CDS:UTR3:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000462641.1:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.61133	4.23978	4.86823	4.55298e-4	4.35895e-4	0.00623608	0.00608573
chr22	39019173	39019271	18368455	0	+	0.469388	(0.455,0.49]	chr22	1562849	9	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	3.94061	4.239685	4.53876	2.93826e-6	1.31171e-6	9.91141e-5	5.53834e-5
chr1	156420529	156420629	1314803	0	-	0.5	(0.49,0.53]	chr1	133512	2	PRIMIRNA	PRIMIRNA:INTRON	MIR9-1HG:MIR9-1	ENSG00000125462.19:ENSG00000207933.3	ENST00000400991.6:ENST00000673141.1:ENST00000497824.5:ENST00000368243.6:ENST00000471156.5:ENST00000465270.5:ENST00000486517.5:ENST00000310027.9:ENST00000497822.5:ENST00000357975.4:ENST00000482932.5:ENST00000484428.5:ENST00000489877.5:ENST00000476966.5:ENST00000463309.5:ENST00000464203.1:ENST00000385198.3	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr1	185300436	185300497	1410621	0	-	0.491803	(0.49,0.53]	chr1	142609	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000480769.5:ENST00000459929.5:ENST00000475046.5:ENST00000494880.5:ENST00000468217.1:ENST00000491112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr12	89603853	89603925	13460963	0	-	0.527778	(0.49,0.53]	chr12	1058710	3	CDS	CDS:EXON_MRNA	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000359142.7:ENST00000261173.6:ENST00000393164.6:ENST00000551009.5:ENST00000549727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr13	112546776	112546875	14159327	0	-	0.50505	(0.49,0.53]	chr13	1107575	4	UTR3	UTR3:EXON_MRNA:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000611152.1:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr2	96734408	96734467	2791780	0	-	0.525424	(0.49,0.53]	chr2	249121	1	CDS	CDS:UTR3:EXON_MRNA	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5:ENST00000480869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr20	396786	396883	17644587	0	+	0.515464	(0.49,0.53]	chr20	1491383	2	UTR3	UTR3:EXON_MRNA	TRIB3	ENSG00000101255.12	ENST00000217233.9	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr3	69965072	69965148	3548119	0	+	0.513158	(0.49,0.53]	chr3	308623	4	CDS	CDS:UTR3:EXON_MRNA	MITF	ENSG00000187098.17	ENST00000352241.9:ENST00000642352.1:ENST00000472437.5:ENST00000448226.9:ENST00000314589.10:ENST00000314557.10:ENST00000394351.9:ENST00000478490.5:ENST00000531774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr5	139026896	139026992	6863543	0	-	0.5	(0.49,0.53]	chr5	525315	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000503732.1:ENST00000505945.1:ENST00000508639.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr6	46205810	46205909	7168177	0	+	0.525253	(0.49,0.53]	chr6	554177	12	EXON_PSEUDO	EXON_PSEUDO	ACTG1P9	ENSG00000229349.2	ENST00000457622.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.73494	4.23966	4.74438	0.0189345	5.91752e-4	0.0934721	0.00743488
chr11	88300587	88300645	12533131	0	-	0.448276	(0.42,0.455]	chr11	972528	2	CDS	CDS:UTR3:EXON_MRNA	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000678065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.46349	4.239555	5.01562	9.0025e-4	1.01971e-4	0.0102618	0.0019861
chr5	21883447	21883542	5904899	0	+	0.431579	(0.42,0.455]	chr5	463295	10	EXON_PSEUDO	EXON_PSEUDO	HSPD1P1	ENSG00000213430.6	ENST00000503199.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.46349	4.239555	5.01562	9.0025e-4	1.01971e-4	0.0102618	0.0019861
chr3	121494508	121494608	3699686	0	+	0.53	(0.49,0.53]	chr3	316099	5	EXON_PSEUDO	EXON_PSEUDO	RPL7AP11	ENSG00000242445.1	ENST00000486538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	41	2	3.08487	4.23943	5.39399	6.09273e-4	1.71804e-5	0.00760626	4.72485e-4
chr1	1786266	1786365	829673	0	-	0.444444	(0.42,0.455]	chr1	82929	11	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.19078	4.2393	5.28782	0.00310864	3.65299e-5	0.0274272	7.95843e-4
chr6	31530793	31530893	7661072	0	-	0.44	(0.42,0.455]	chr6	584674	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000474961.5:ENST00000396172.6:ENST00000462421.1:ENST00000417023.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.19078	4.2393	5.28782	0.00310864	3.65299e-5	0.0274272	7.95843e-4
chr12	122093562	122093662	13122638	0	+	0.49	(0.455,0.49]	chr12	1024773	139	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.71798	4.23923	4.76048	0.0202679	3.99985e-4	0.0984041	0.00588767
chr2	26135118	26135215	1685701	0	+	0.298969	(0.29,0.33]	chr2	164739	2	UTR3	UTR3:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	113	2	3.11932	4.23918	5.35904	2.63736e-7	1.13633e-9	1.27973e-5	1.27882e-7
chr9	76386609	76386707	10694384	0	-	0.377551	(0.36,0.39]	chr9	809404	12	UTR3	UTR3:EXON_MRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	3.60784	4.239155	4.87047	3.79774e-5	9.44092e-10	9.11358e-4	9.96903e-8
chr10	69088157	69088236	11094003	0	+	0.506329	(0.49,0.53]	chr10	843390	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	3.6358	4.239005	4.84221	2.45857e-5	1.36913e-9	5.74553e-4	1.50118e-7
chr12	123597216	123597314	13127193	0	+	0.418367	(0.39,0.42]	chr12	1025792	6	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000543425.1:ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	133	2	3.1008	4.238955	5.37711	1.52175e-5	6.1271e-12	4.27049e-4	1.12507e-9
chr5	132195411	132195480	6833480	0	-	0.536232	(0.53,0.59]	chr5	522682	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000467587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.0099	4.23876	5.46762	0.00600486	1.97761e-5	0.042887	5.29643e-4
chr1	244409386	244409485	1590667	0	-	0.414141	(0.39,0.42]	chr1	158292	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-518L10.5:ADSS2	ENSG00000240963.1:ENSG00000035687.10	ENST00000417765.1:ENST00000366535.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	31	2	2.88836	4.238695	5.58903	0.0102432	5.14263e-6	0.062872	1.58468e-4
chr17	28723976	28724072	16177306	0	+	0.46875	(0.455,0.49]	chr17	1305508	2	UTR3	UTR3:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000355731.8	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	3.66739	4.238665	4.80994	2.02214e-5	1.95422e-9	5.39633e-4	1.89915e-7
chrX	73827884	73827984	19113547	0	-	0.34	(0.33,0.36]	chrX	1626115	63	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2:ENST00000602587.5:ENST00000445814.2	lncRNA	lncRNA	lncRNA	lncRNA	11	154	2	4.23698	4.23844	4.2399	2.4728e-9	3.54692e-11	2.32162e-7	5.97795e-9
chr12	56613952	56614045	13351864	0	-	0.483871	(0.455,0.49]	chr12	1051695	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000547647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	4.0992	4.238065	4.37693	2.73975e-5	4.5365e-6	6.95757e-4	1.42727e-4
chr17	8475303	8475403	16432959	0	-	0.49	(0.455,0.49]	chr17	1340589	12	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	4.0992	4.238065	4.37693	2.73975e-5	4.5365e-6	6.95757e-4	1.42727e-4
chr1	211578164	211578251	1478572	0	-	0.689655	(0.59,1]	chr1	149196	3	CDS	CDS:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.4666	4.238025	5.00945	0.00149725	0.00133574	0.0159607	0.0139317
chr11	73872755	73872845	12458649	0	-	0.277778	[0,0.29]	chr11	968432	2	UTR3	UTR3:EXON_MRNA	COA4	ENSG00000181924.7	ENST00000355693.5:ENST00000545127.1:ENST00000541455.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.90176	4.23796	4.57416	0.00977224	6.75561e-4	0.0611259	0.00873562
chr8	30063093	30063184	9780447	0	-	0.285714	[0,0.29]	chr8	739499	2	UTR3	UTR3:EXON_MRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.90176	4.23796	4.57416	0.00977224	6.75561e-4	0.0611259	0.00873562
chrX	15831335	15831433	18969887	0	-	0.234694	[0,0.29]	chrX	1615220	14	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AP1S2	ENSG00000182287.15	ENST00000329235.6:ENST00000672987.1:ENST00000673445.1:ENST00000452376.5:ENST00000671830.1:ENST00000672063.1:ENST00000545766.7:ENST00000380291.5:ENST00000450644.2:ENST00000479184.2:ENST00000673591.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.90176	4.23796	4.57416	0.00977224	6.75561e-4	0.0611259	0.00873562
chrX	24211475	24211575	18617350	0	+	0.25	[0,0.29]	chrX	1589934	2	UTR3	UTR3:EXON_MRNA	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.90176	4.23796	4.57416	0.00977224	6.75561e-4	0.0611259	0.00873562
chr1	150965757	150965854	1291362	0	-	0.494845	(0.49,0.53]	chr1	128670	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	128	2	3.80993	4.23789	4.66585	5.39247e-7	1.38307e-8	2.63471e-5	1.02688e-6
chr4	169791412	169791509	5793911	0	-	0.381443	(0.36,0.39]	chr4	456106	3	EXON_PSEUDO	EXON_PSEUDO	PTGES3P3	ENSG00000229204.3	ENST00000511479.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	43	2	2.42114	4.237835	6.05453	0.00564641	1.53427e-7	0.0422191	8.08703e-6
chr19	38632600	38632678	17322865	0	+	0.564103	(0.53,0.59]	chr19	1434246	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000592558.1:ENST00000588299.1:ENST00000590134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	159	2	3.43029	4.23751	5.04473	1.20772e-6	3.26163e-10	4.6869e-5	4.30364e-8
chr10	119898692	119898781	11285773	0	+	0.47191	(0.455,0.49]	chr10	859912	4	CDS	CDS:EXON_MRNA	SEC23IP	ENSG00000107651.14	ENST00000369075.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr11	65352529	65352625	11984147	0	+	0.46875	(0.455,0.49]	chr11	920300	9	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr12	54456085	54456153	13343993	0	-	0.426471	(0.42,0.455]	chr12	1049866	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000552336.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	4.02236	4.237425	4.45249	2.45559e-6	1.61783e-6	9.39733e-5	5.98677e-5
chr17	61950824	61950911	16628281	0	-	0.45977	(0.455,0.49]	chr17	1366822	1	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr2	65016439	65016517	1853314	0	+	0.487179	(0.455,0.49]	chr2	175837	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr3	48751502	48751584	4170050	0	-	0.487805	(0.455,0.49]	chr3	350023	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13:ENST00000454963.5:ENST00000296446.12:ENST00000437821.2:ENST00000438535.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr6	20124503	20124600	7628687	0	-	0.484536	(0.455,0.49]	chr6	581191	2	CDS	CDS:EXON_MRNA	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr7	2362704	2362764	8096157	0	+	0.483333	(0.455,0.49]	chr7	618857	2	CDS	CDS:UTR5:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chrX	52761180	52761269	18702032	0	+	0.47191	(0.455,0.49]	chrX	1595821	4	UTR3	UTR3:EXON_MRNA:INTRON	SSX2B	ENSG00000268447.6	ENST00000616191.4:ENST00000596480.6:ENST00000612490.1:ENST00000288839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chrX	78029346	78029444	18746157	0	+	0.489796	(0.455,0.49]	chrX	1599741	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.81275	4.237425	4.6621	0.0138827	7.84472e-4	0.0760883	0.00927662
chr10	50306946	50307043	11486521	0	-	0.391753	(0.39,0.42]	chr10	876691	15	UTR3	UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.3111	4.237285	5.16347	2.11919e-4	6.48089e-5	0.00357806	0.00126536
chr1	150308128	150308228	466559	0	+	0.52	(0.49,0.53]	chr1	47116	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	3.84832	4.23704	4.62576	5.8066e-6	7.32131e-7	1.75335e-4	3.41344e-5
chr17	82765117	82765210	16385495	0	+	0.494624	(0.49,0.53]	chr17	1332894	7	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	3.15207	4.23693	5.32179	0.00347189	2.63311e-5	0.0286293	6.73425e-4
chr2	206159894	206159979	2337573	0	+	0.6	(0.59,1]	chr2	211058	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000445505.5:ENST00000479587.1:ENST00000429769.5:ENST00000460760.1:ENST00000392222.7:ENST00000415904.1:ENST00000455150.1:ENST00000435123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	309	2	3.79023	4.236865	4.6835	4.36637e-6	1.39149e-9	1.52262e-4	1.40797e-7
chr19	38380898	38380948	17320740	0	+	0.5	(0.49,0.53]	chr19	1433572	1	CDS	CDS:EXON_MRNA:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000590331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.68246	4.2366600000000005	4.79086	4.20783e-4	3.06313e-4	0.00611538	0.00442973
chr3	136195013	136195113	4469755	0	-	0.55	(0.53,0.59]	chr3	371348	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	4.03453	4.23658	4.43863	0.00254763	4.6e-5	0.0233955	9.56296e-4
chr1	229547565	229547633	1542839	0	-	0.529412	(0.49,0.53]	chr1	154574	2	CDS	CDS:EXON_MRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.60116	4.236535	5.87191	0.0056515	9.67449e-7	0.0422191	3.88631e-5
chr12	6870477	6870571	12714955	0	+	0.468085	(0.455,0.49]	chr12	987157	2	UTR3	UTR3:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000535434.5:ENST00000474253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	99	2	3.20576	4.236375	5.26699	6.06648e-6	2.79396e-9	1.82424e-4	2.79164e-7
chr19	38843841	38843914	17561148	0	-	0.452055	(0.42,0.455]	chr19	1475086	1	CDS	CDS:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	3.71365	4.23632	4.75899	2.63375e-4	2.77134e-7	0.00427022	1.3349e-5
chr2	86471205	86471304	1927239	0	+	0.222222	[0,0.29]	chr2	181624	4	INTRON	INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000485171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	4.1103	4.236065	4.36183	0.00493104	0.00170062	0.0366648	0.01759
chr3	37983303	37983397	3418019	0	+	0.287234	[0,0.29]	chr3	296824	8	UTR3	UTR3:EXON_MRNA:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000447745.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.1103	4.236065	4.36183	0.00493104	0.00170062	0.0366648	0.01759
chr9	35717145	35717243	10639686	0	-	0.571429	(0.53,0.59]	chr9	805106	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.20114	4.2360050000000005	5.27087	6.63641e-5	5.9416e-5	0.00130151	0.00129398
chrX	154436069	154436158	18917921	0	+	0.505618	(0.49,0.53]	chrX	1611929	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	3.68088	4.23587	4.79086	4.20783e-4	1.82756e-5	0.00611538	4.52458e-4
chr1	19238016	19238077	877338	0	-	0.622951	(0.59,1]	chr1	90495	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.33465	4.235720000000001	5.13679	9.28022e-4	2.51362e-4	0.0111748	0.00379143
chr1	25832758	25832850	107463	0	+	0.51087	(0.49,0.53]	chr1	12578	9	UTR3	UTR3:EXON_MRNA	MTFR1L	ENSG00000117640.18	ENST00000474295.5:ENST00000374303.7:ENST00000374307.9:ENST00000374301.7:ENST00000374300.7:ENST00000466284.1:ENST00000497956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.8671	4.23556	5.60402	0.0100489	5.78803e-6	0.0623334	1.75119e-4
chr22	32491085	32491181	18354379	0	+	0.4375	(0.42,0.455]	chr22	1560425	1	CDS	CDS:UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000484607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	3.79103	4.2354199999999995	4.67981	5.38444e-4	8.61353e-6	0.00744072	2.43348e-4
chr15	29708653	29708749	15183862	0	-	0.447917	(0.42,0.455]	chr15	1195093	2	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.91373	4.2353749999999994	5.55702	0.00892357	7.30994e-6	0.0567495	2.13219e-4
chr4	135045760	135045859	5119831	0	+	0.424242	(0.42,0.455]	chr4	414782	4	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	2.91373	4.2353749999999994	5.55702	0.00892357	7.30994e-6	0.0567495	2.13219e-4
chr9	137241774	137241829	10515390	0	+	0.6	(0.59,1]	chr9	797245	2	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	99	2	4.1264	4.235345000000001	4.34429	6.92354e-5	1.84713e-5	0.00146697	4.5469e-4
chr1	247311354	247311454	1604143	0	-	0.46	(0.455,0.49]	chr1	159299	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.09445	4.23527	5.37609	6.1765e-4	2.05373e-5	0.00822794	4.97369e-4
chr8	11847750	11847822	9699239	0	-	0.694444	(0.59,1]	chr8	734818	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000530290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	203	2	3.37546	4.2351149999999995	5.09477	2.25785e-4	3.28962e-9	0.00375451	2.96408e-7
chr7	56103011	56103111	8827427	0	-	0.36	(0.33,0.36]	chr7	673693	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	3.82456	4.2350449999999995	4.64553	6.69086e-4	9.91401e-6	0.00820018	3.00031e-4
chr11	119045592	119045654	12626422	0	-	0.435484	(0.42,0.455]	chr11	979743	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	3.79881	4.235005	4.6712	1.65328e-4	7.36673e-9	0.0029267300000000002	5.97256e-7
chr21	42849126	42849225	18270847	0	-	0.616162	(0.59,1]	chr21	1549336	55	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	4.09582	4.234525	4.37323	0.00990413	8.09451e-5	0.061536	0.00167997
chr17	81843158	81843252	16709485	0	-	0.393617	(0.39,0.42]	chr17	1377674	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.13033	4.234425	6.33852	0.00865856	2.05438e-8	0.0557159	1.43837e-6
chr10	24621155	24621255	11416544	0	-	0.47	(0.455,0.49]	chr10	870195	1	CDS_START	CDS_START:CDS:EXON_MRNA	ARHGAP21	ENSG00000107863.19	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000320481.10:ENST00000636789.1:ENST00000446003.5:ENST00000483114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.10535	4.234209999999999	4.36307	0.0064531	0.00218641	0.0450905	0.0208941
chr17	32228035	32228108	16499059	0	-	0.479452	(0.455,0.49]	chr17	1349963	3	EXON_PSEUDO	EXON_PSEUDO	UBL5P2	ENSG00000266282.1	ENST00000583788.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.10535	4.234209999999999	4.36307	0.0064531	0.00218641	0.0450905	0.0208941
chr2	64634458	64634555	2704986	0	-	0.463918	(0.455,0.49]	chr2	241251	30	UTR3	UTR3:EXON_MRNA	SERTAD2	ENSG00000179833.4	ENST00000313349.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.10535	4.234209999999999	4.36307	0.0064531	0.00218641	0.0450905	0.0208941
chr20	32194773	32194871	17941018	0	-	0.459184	(0.455,0.49]	chr20	1519244	24	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.10535	4.234209999999999	4.36307	0.0064531	0.00218641	0.0450905	0.0208941
chr3	43432610	43432668	4144206	0	-	0.465517	(0.455,0.49]	chr3	346415	1	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.10535	4.234209999999999	4.36307	0.0064531	0.00218641	0.0450905	0.0208941
chr1	31633158	31633236	919056	0	-	0.461538	(0.455,0.49]	chr1	96308	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PEF1	ENSG00000162517.13	ENST00000373703.5:ENST00000461006.5:ENST00000478502.5:ENST00000489164.5:ENST00000492061.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr1	77722109	77722196	1112115	0	-	0.471264	(0.455,0.49]	chr1	111750	2	CDS	CDS:EXON_MRNA	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000461986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr11	119302146	119302245	12163770	0	+	0.464646	(0.455,0.49]	chr11	938080	25	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr12	6864721	6864798	12714885	0	+	0.480519	(0.455,0.49]	chr12	987114	1	CDS	CDS:EXON_MRNA	USP5	ENSG00000111667.14	ENST00000389231.9:ENST00000229268.13:ENST00000537267.5:ENST00000542371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr14	73192790	73192864	14395035	0	+	0.486486	(0.455,0.49]	chr14	1124529	3	CDS	CDS:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr14	77751399	77751480	14719145	0	-	0.45679	(0.455,0.49]	chr14	1153539	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5:ENST00000554324.1:ENST00000557663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr3	179593764	179593829	4606129	0	-	0.461538	(0.455,0.49]	chr3	380244	1	CDS	CDS:EXON_MRNA	MRPL47	ENSG00000136522.14	ENST00000476781.6:ENST00000259038.6:ENST00000392659.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr5	96993893	96993971	6118514	0	+	0.461538	(0.455,0.49]	chr5	478800	2	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr7	137879215	137879311	9097065	0	-	0.479167	(0.455,0.49]	chr7	694031	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chrX	40600832	40600881	18667583	0	+	0.489796	(0.455,0.49]	chrX	1591872	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000638046.1:ENST00000637165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.20189	4.23391	4.26593	0.00397662	0.00372962	0.0322851	0.0302984
chr12	63823598	63823697	12916682	0	+	0.464646	(0.455,0.49]	chr12	1006815	17	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	59	2	3.82741	4.233595	4.63978	6.94032e-4	7.2352e-7	0.00876781	3.02956e-5
chr3	38486502	38486602	3421777	0	+	0.43	(0.42,0.455]	chr3	297512	33	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.35491	4.233545	5.11218	1.39104e-4	6.01815e-5	0.00235518	0.00130886
chr14	64427404	64427473	14343897	0	+	0.521739	(0.49,0.53]	chr14	1121312	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000555252.5:ENST00000555709.7:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000553391.2:ENST00000652509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	3.83319	4.233285	4.63338	9.56909e-4	1.34601e-4	0.010724	0.00249552
chr1	113967856	113967948	418148	0	+	0.467391	(0.455,0.49]	chr1	41174	2	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.30384	4.232995	5.16215	0.00184955	5.04348e-5	0.0178046	0.00113788
chr20	45892398	45892484	17803003	0	+	0.488372	(0.455,0.49]	chr20	1505424	1	CDS	CDS:UTR3:EXON_MRNA	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3:ENST00000485627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.30384	4.232995	5.16215	0.00184955	5.04348e-5	0.0178046	0.00113788
chr21	31700994	31701082	18211503	0	-	0.443182	(0.42,0.455]	chr21	1545338	1	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	3.2633	4.23299	5.20268	4.36674e-5	3.59669e-5	9.18809e-4	8.71318e-4
chr10	118932573	118932673	11716189	0	-	0.36	(0.33,0.36]	chr10	893737	601	INTRON	INTRON	RP11-498J9.2	ENSG00000229272.2	ENST00000663084.1	lncRNA	lncRNA	lncRNA	lncRNA	3	66	2	4.1284	4.23292	4.33744	0.00407303	7.57922e-9	0.0324137	6.12104e-7
chr1	228464451	228464538	1539751	0	-	0.551724	(0.53,0.59]	chr1	154188	5	EXON_PSEUDO	EXON_PSEUDO	H2BU2P	ENSG00000181201.3	ENST00000436555.1	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	unitary_pseudogene	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr11	308099	308192	11756387	0	+	0.55914	(0.53,0.59]	chr11	897722	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM2	ENSG00000185201.17	ENST00000681810.1:ENST00000681914.1:ENST00000680081.1:ENST00000679962.1:ENST00000681900.1:ENST00000681276.1:ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr17	44379751	44379814	16558078	0	-	0.587302	(0.53,0.59]	chr17	1359460	2	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr17	56991098	56991171	16282189	0	+	0.575342	(0.53,0.59]	chr17	1320545	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCPEP1	ENSG00000121064.13	ENST00000575423.5:ENST00000262288.8:ENST00000572591.5:ENST00000571345.5:ENST00000575395.5:ENST00000572710.5:ENST00000576154.5:ENST00000571898.5:ENST00000631024.1:ENST00000570480.5:ENST00000570589.5:ENST00000573789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr2	27201055	27201113	2569362	0	-	0.568965	(0.53,0.59]	chr2	231186	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6:ENST00000408041.5:ENST00000461319.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr2	120222496	120222591	2859293	0	-	0.568421	(0.53,0.59]	chr2	255245	6	CDS	CDS:EXON_MRNA	TMEM185B	ENSG00000226479.4	ENST00000426077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr20	2660029	2660102	17879607	0	-	0.575342	(0.53,0.59]	chr20	1512926	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDH3B	ENSG00000101365.21	ENST00000380851.9:ENST00000380843.9:ENST00000474315.5:ENST00000488299.5:ENST00000492240.5:ENST00000466494.6:ENST00000477689.2:ENST00000613370.1:ENST00000479376.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr20	34928827	34928927	17950029	0	-	0.58	(0.53,0.59]	chr20	1520321	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GSS	ENSG00000100983.12	ENST00000651619.1:ENST00000646735.1:ENST00000646405.1:ENST00000642498.1:ENST00000643908.1:ENST00000645723.1:ENST00000643188.1:ENST00000644793.1:ENST00000646512.1:ENST00000645328.1:ENST00000643502.1:ENST00000644538.1:ENST00000643443.1:ENST00000451957.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr3	52231943	52232003	4182441	0	-	0.583333	(0.53,0.59]	chr3	352602	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000678352.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000679180.1:ENST00000678700.1:ENST00000676552.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr6	31689066	31689119	7661737	0	-	0.584906	(0.53,0.59]	chr6	584980	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000475742.5:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000471644.5:ENST00000477016.5:ENST00000498420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr6	170583623	170583685	8091283	0	-	0.532258	(0.53,0.59]	chr6	618084	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000392090.6:ENST00000545869.5:ENST00000542896.5:ENST00000544866.5:ENST00000539212.5:ENST00000538195.1:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2:ENST00000544755.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.15805	4.232905000000001	4.30776	0.00680952	0.00407289	0.0468196	0.0324137
chr1	19094043	19094139	875786	0	-	0.552083	(0.53,0.59]	chr1	89930	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1:ENST00000467272.6:ENST00000483922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr11	248931	248994	11756102	0	+	0.587302	(0.53,0.59]	chr11	897597	1	CDS	CDS:UTR3:EXON_MRNA	PSMD13	ENSG00000185627.18	ENST00000532097.6:ENST00000431206.6:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1:ENST00000533717.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr12	120914942	120915032	13117872	0	+	0.533333	(0.53,0.59]	chr12	1024087	7	EXON_PSEUDO	EXON_PSEUDO	CLIC1P1	ENSG00000231313.2	ENST00000431907.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr17	72647583	72647662	16669283	0	-	0.544304	(0.53,0.59]	chr17	1371716	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC39A11	ENSG00000133195.11	ENST00000255559.7:ENST00000542342.6:ENST00000579988.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr19	40667076	40667173	17566679	0	-	0.546392	(0.53,0.59]	chr19	1476409	13	UTR3	UTR3:EXON_MRNA	NUMBL	ENSG00000105245.9	ENST00000252891.8:ENST00000598779.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr2	130230662	130230761	2061343	0	+	0.585859	(0.53,0.59]	chr2	193552	14	EXON_PSEUDO	EXON_PSEUDO	NOC2LP1	ENSG00000213225.7	ENST00000452600.1	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr22	29354649	29354723	18465035	0	-	0.554054	(0.53,0.59]	chr22	1575138	1	CDS	CDS:EXON_MRNA	AP1B1	ENSG00000100280.17	ENST00000357586.7:ENST00000432560.6:ENST00000405198.6:ENST00000317368.11:ENST00000421126.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr22	41149760	41149847	18378667	0	+	0.54023	(0.53,0.59]	chr22	1564141	1	CDS	CDS:EXON_MRNA	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr6	30583804	30583890	7111492	0	+	0.55814	(0.53,0.59]	chr6	544847	1	CDS	CDS:EXON_MRNA:PRIMIRNA	ABCF1:MIR877	ENSG00000204574.14:ENSG00000216101.3	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1:ENST00000401282.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr6	33418000	33418086	7669570	0	-	0.569767	(0.53,0.59]	chr6	587685	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000487637.1:ENST00000374496.3:ENST00000492510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr7	75881991	75882073	8341215	0	+	0.573171	(0.53,0.59]	chr7	636068	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RHBDD2	ENSG00000005486.17	ENST00000466232.5:ENST00000468644.5:ENST00000318622.8:ENST00000454791.1:ENST00000006777.11:ENST00000468304.1:ENST00000428119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr7	130024343	130024424	9062834	0	-	0.580247	(0.53,0.59]	chr7	692057	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000477578.5:ENST00000471022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr9	34635674	34635731	10637516	0	-	0.578947	(0.53,0.59]	chr9	804342	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SIGMAR1	ENSG00000147955.18	ENST00000277010.9:ENST00000679597.1:ENST00000353468.4:ENST00000378892.5:ENST00000497006.2:ENST00000680104.1:ENST00000681409.1:ENST00000680730.1:ENST00000680244.1:ENST00000477726.1:ENST00000461426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.16383	4.232889999999999	4.30195	0.00659193	0.00421989	0.0454205	0.0328662
chr1	26780852	26780948	111021	0	+	0.552083	(0.53,0.59]	chr1	13356	2	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	4.13569	4.232705	4.32972	2.50241e-5	7.20871e-6	5.82427e-4	2.30406e-4
chr17	7014186	7014286	16103376	0	+	0.52	(0.49,0.53]	chr17	1296033	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNASEK:RNASEK-C17orf49	ENSG00000219200.12:ENSG00000161939.19	ENST00000548577.5:ENST00000546395.5:ENST00000570898.1:ENST00000593646.6:ENST00000552039.2:ENST00000549775.5:ENST00000552176.2:ENST00000552842.1:ENST00000549393.2:ENST00000547863.5:ENST00000552321.2:ENST00000607564.1:ENST00000547302.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	3.96681	4.23257	4.49833	1.88388e-6	2.40034e-7	7.53959e-5	1.18282e-5
chr16	58163563	58163661	15965661	0	-	0.346939	(0.33,0.36]	chr16	1280935	42	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	3.77872	4.23216	4.6856	3.92435e-4	9.40708e-6	0.00583618	2.61824e-4
chr12	4098435	4098533	12704115	0	+	0.5	(0.49,0.53]	chr12	985492	11	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	3.51981	4.23172	4.94363	6.88328e-4	2.3417e-4	0.00876781	0.00355764
chr12	122094662	122094762	13122649	0	+	0.5	(0.49,0.53]	chr12	1024773	150	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.42954	4.231675	5.03381	0.00105489	1.49689e-4	0.0123035	0.0024973
chr16	71927912	71928012	15733924	0	+	0.51	(0.49,0.53]	chr16	1253455	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	IST1	ENSG00000182149.21	ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	3.42954	4.231675	5.03381	0.00105489	1.49689e-4	0.0123035	0.0024973
chr8	106697719	106697817	9997308	0	-	0.520408	(0.49,0.53]	chr8	753977	4	EXON_PSEUDO	EXON_PSEUDO	TAGLN2P1	ENSG00000253676.1	ENST00000524097.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	3.42954	4.231675	5.03381	0.00105489	1.49689e-4	0.0123035	0.0024973
chr11	125582345	125582420	12194195	0	+	0.44	(0.42,0.455]	chr11	940672	1	CDS	CDS:UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000531636.5:ENST00000527235.6:ENST00000530540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.90616	4.23159	5.55702	0.00162359	7.30994e-6	0.0169915	2.13219e-4
chr1	180186117	180186182	582800	0	+	0.630769	(0.59,1]	chr1	60556	2	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	3.98751	4.23134	4.47517	0.0301044	0.00735659	0.129773	0.0491503
chr15	74023214	74023311	15025261	0	+	0.680412	(0.59,1]	chr15	1180835	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569477.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000567543.5:ENST00000563500.5:ENST00000564725.1:ENST00000569161.1:ENST00000565239.5:ENST00000567606.5:ENST00000566068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	3.98751	4.23134	4.47517	0.0301044	0.00735659	0.129773	0.0491503
chr17	8474904	8475004	16432955	0	-	0.66	(0.59,1]	chr17	1340589	8	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.98751	4.23134	4.47517	0.0301044	0.00735659	0.129773	0.0491503
chr9	33442372	33442445	10632552	0	-	0.643836	(0.59,1]	chr9	803592	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2:ENST00000645858.1:ENST00000463983.5:ENST00000473153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.98751	4.23134	4.47517	0.0301044	0.00735659	0.129773	0.0491503
chr13	113482939	113483039	14161590	0	-	0.31	(0.29,0.33]	chr13	1107895	18	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000375403.6:ENST00000332592.7:ENST00000438545.6:ENST00000465938.5:ENST00000496873.1:ENST00000460318.1:ENST00000439909.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	3.8228	4.23127	4.63974	4.81181e-4	1.45428e-4	0.00677016	0.00244094
chr2	43408306	43408359	1764197	0	+	0.415094	(0.39,0.42]	chr2	171029	1	EXON_SMALL	EXON_SMALL	RNU6-958P	ENSG00000252804.1	ENST00000516995.1	snRNA	snRNA	snRNA	snRNA	1	36	2	2.49701	4.23118	5.96535	0.0339607	3.80804e-7	0.141431	1.7481e-5
chr5	179730841	179730941	6414482	0	+	0.33	(0.29,0.33]	chr5	499211	23	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	149	2	4.17843	4.231095	4.28376	5.80091e-8	2.27131e-11	3.86e-6	3.62497e-9
chr1	12191020	12191085	47128	0	+	0.6	(0.59,1]	chr1	6089	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1:ENST00000536782.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.01545	4.23108	4.44671	0.0251889	0.00931497	0.114168	0.0586162
chr15	34101671	34101739	15202958	0	-	0.617647	(0.59,1]	chr15	1196612	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1:ENST00000532113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	4.01545	4.23108	4.44671	0.0251889	0.00931497	0.114168	0.0586162
chr15	78540404	78540471	15040489	0	+	0.671642	(0.59,1]	chr15	1183187	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000560033.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000558635.1:ENST00000560099.5:ENST00000557929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	24	2	4.01545	4.23108	4.44671	0.0251889	0.00931497	0.114168	0.0586162
chr17	78971773	78971871	16698070	0	-	0.612245	(0.59,1]	chr17	1376215	2	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	24	2	4.01545	4.23108	4.44671	0.0251889	0.00931497	0.114168	0.0586162
chr22	21688072	21688106	18303679	0	+	0.705882	(0.59,1]	chr22	1554359	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	24	2	4.01545	4.23108	4.44671	0.0251889	0.00931497	0.114168	0.0586162
chr4	66094333	66094429	4865788	0	+	0.604167	(0.59,1]	chr4	400369	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-25H12.1:IFITM3P1	ENSG00000249413.2:ENSG00000236562.4	ENST00000508572.1:ENST00000505282.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	24	2	4.01545	4.23108	4.44671	0.0251889	0.00931497	0.114168	0.0586162
chr11	43397873	43397973	11920432	0	+	0.45	(0.42,0.455]	chr11	910939	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5:ENST00000524936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	3.17433	4.2310799999999995	5.28783	3.82052e-4	2.17539e-5	0.0052929	5.73422e-4
chr3	196071446	196071498	4663378	0	-	0.423077	(0.42,0.455]	chr3	385625	2	CDS	CDS:UTR3:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	383	2	3.95388	4.231059999999999	4.50824	3.41759e-11	1e-12	5.2181e-9	2.46312e-10
chr17	59738852	59738947	16295954	0	+	0.431579	(0.42,0.455]	chr17	1321811	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000591315.5:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	106	2	4.10452	4.230815	4.35711	8.219e-7	7.68305e-9	3.75569e-5	6.19048e-7
chr1	27407792	27407891	908781	0	-	0.515152	(0.49,0.53]	chr1	95011	37	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	3.52514	4.230595	4.93605	4.98361e-5	6.89689e-8	0.0011306	4.06041e-6
chr11	102402099	102402152	12562742	0	-	0.490566	(0.49,0.53]	chr11	974357	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	73	2	3.52514	4.230595	4.93605	4.98361e-5	6.89689e-8	0.0011306	4.06041e-6
chr11	4118335	4118435	11774257	0	+	0.39	(0.36,0.39]	chr11	900982	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	4.15583	4.23043	4.30503	1.9188e-5	7.76959e-6	4.68725e-4	2.43892e-4
chr6	17615999	17616096	7618879	0	-	0.43299	(0.42,0.455]	chr6	580511	11	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.54838	4.230255	4.91213	5.9986e-4	1.75074e-4	0.0075062	0.00306313
chr2	61869439	61869496	2691335	0	-	0.421053	(0.42,0.455]	chr2	240533	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	3.8515	4.23023	4.60896	0.0119089	8.72604e-7	0.0686664	3.55816e-5
chr10	46010320	46010418	11470973	0	-	0.469388	(0.455,0.49]	chr10	874843	2	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	4	114	2	3.17056	4.22997	5.28938	4.1243e-4	1.66636e-11	0.00604953	2.7509e-9
chr6	36916509	36916574	7135672	0	+	0.446154	(0.42,0.455]	chr6	549792	2	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.91132	4.229620000000001	4.54792	9.66045e-4	3.67157e-6	0.0115185	1.1967e-4
chr11	102401915	102401999	12562740	0	-	0.416667	(0.39,0.42]	chr11	974355	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	113	2	4.04235	4.229595	4.41684	1.17769e-7	4.08243e-9	7.23278e-6	3.56785e-7
chr11	18400935	18401025	11831489	0	+	0.355556	(0.33,0.36]	chr11	906010	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	197	2	3.95068	4.229185	4.50769	9.54041e-10	1.25644e-12	1.00619e-7	3.01998e-10
chr1	91722049	91722144	1164394	0	-	0.389474	(0.36,0.39]	chr1	114936	2	CDS	CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000529608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	3.02397	4.22906	5.43415	0.00674398	1.15393e-5	0.0461258	3.09736e-4
chr6	137204417	137204504	7988122	0	-	0.356322	(0.33,0.36]	chr6	610813	2	CDS	CDS:UTR3:EXON_MRNA	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000458076.5:ENST00000414770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.97606	4.22896	5.48186	0.00871774	7.22374e-6	0.0558165	2.11873e-4
chr2	128179785	128179870	2060401	0	+	0.4	(0.39,0.42]	chr2	193358	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7:ENST00000418197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.9641	4.22867	4.49324	0.00108192	6.346e-5	0.0124943	0.00124725
chr11	3411045	3411141	12235881	0	-	0.427083	(0.42,0.455]	chr11	945327	2	INTRON	INTRON	FAM86GP	ENSG00000166492.9	ENST00000448322.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	17	2	3.90921	4.228565	4.54792	0.0121657	9.66045e-4	0.0701019	0.0115185
chr6	11768248	11768334	7602525	0	-	0.453488	(0.42,0.455]	chr6	579819	1	CDS	CDS:UTR3:EXON_MRNA	ADTRP	ENSG00000111863.13	ENST00000414691.8:ENST00000229583.9:ENST00000379415.6:ENST00000506810.1:ENST00000485323.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.90921	4.228565	4.54792	0.0121657	9.66045e-4	0.0701019	0.0115185
chr6	159777301	159777378	7526923	0	+	0.428571	(0.42,0.455]	chr6	574539	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000472052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.90921	4.228565	4.54792	0.0121657	9.66045e-4	0.0701019	0.0115185
chr16	75635911	75636000	16039163	0	-	0.460674	(0.455,0.49]	chr16	1288327	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5:ENST00000566772.1:ENST00000568682.5:ENST00000570215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	4.03349	4.22849	4.42349	4.13044e-5	3.27827e-6	9.71332e-4	1.08637e-4
chr17	78971871	78971970	16698071	0	-	0.585859	(0.53,0.59]	chr17	1376215	3	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	3.69065	4.22849	4.76633	6.98999e-4	3.04331e-4	0.00846751	0.00472028
chr19	11129450	11129523	17230282	0	+	0.657534	(0.59,1]	chr19	1419633	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	3.09455	4.228289999999999	5.36203	7.92671e-4	3.74697e-4	0.00933379	0.00560631
chr19	49338699	49338778	17369714	0	+	0.658228	(0.59,1]	chr19	1442757	1	CDS	CDS:UTR3:EXON_MRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000597852.5:ENST00000535669.6:ENST00000594743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	3.09455	4.228289999999999	5.36203	7.92671e-4	3.74697e-4	0.00933379	0.00560631
chr1	236596905	236596976	1568695	0	-	0.507042	(0.49,0.53]	chr1	157150	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6:ENST00000483073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.8967	4.227995	4.55929	0.0128791	0.00116196	0.0725185	0.0130851
chr13	100540074	100540161	14125947	0	-	0.517241	(0.49,0.53]	chr13	1105873	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	GGACT:RP11-151A6.4:RPS26P47	ENSG00000134864.11:ENSG00000224356.5:ENSG00000234354.3	ENST00000683975.1:ENST00000376250.6:ENST00000492399.5:ENST00000471912.1:ENST00000454752.3:ENST00000629479.1:ENST00000427219.1	protein_coding	protein_coding	protein_coding:lncRNA:processed_pseudogene	protein_coding:lncRNA:processed_pseudogene	0	18	2	3.8967	4.227995	4.55929	0.0128791	0.00116196	0.0725185	0.0130851
chr15	30044913	30045009	14842949	0	+	0.520833	(0.49,0.53]	chr15	1164924	3	EXON_PSEUDO	EXON_PSEUDO	SYNGR2P1	ENSG00000260174.1	ENST00000569699.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.8967	4.227995	4.55929	0.0128791	0.00116196	0.0725185	0.0130851
chr16	14436161	14436253	15861060	0	-	0.51087	(0.49,0.53]	chr16	1267182	6	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.8967	4.227995	4.55929	0.0128791	0.00116196	0.0725185	0.0130851
chr20	63995326	63995404	17867446	0	+	0.5	(0.49,0.53]	chr20	1511366	1	CDS	CDS:EXON_MRNA	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.8967	4.227995	4.55929	0.0128791	0.00116196	0.0725185	0.0130851
chr2	86773509	86773608	1928590	0	+	0.414141	(0.39,0.42]	chr2	181779	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5:ENST00000471113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.99507	4.2279599999999995	5.46085	0.00637824	5.81708e-6	0.0449937	1.921e-4
chr16	18793251	18793351	15877078	0	-	0.35	(0.33,0.36]	chr16	1269297	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	157	2	3.36716	4.22772	5.08828	8.42594e-6	1e-12	2.61275e-4	2.25522e-10
chr7	103728110	103728207	8965592	0	-	0.505155	(0.49,0.53]	chr7	686377	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	1.99044	4.22769	6.46494	0.0435903	1.01442e-8	0.170594	7.85427e-7
chr12	52951562	52951645	12884262	0	+	0.554217	(0.53,0.59]	chr12	1001700	2	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5:ENST00000548015.1:ENST00000546656.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	3.18447	4.22767	5.27087	5.9416e-5	2.12116e-5	0.00130151	5.07604e-4
chr1	173867959	173867991	1373044	0	-	0.53125	(0.53,0.59]	chr1	139935	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GAS5	ENSG00000234741.8	ENST00000449289.5:ENST00000430245.5:ENST00000431268.5:ENST00000436656.5:ENST00000412059.5:ENST00000450589.5:ENST00000452197.5:ENST00000650796.1:ENST00000449589.5:ENST00000455838.5:ENST00000416952.5:ENST00000456293.5:ENST00000443799.5:ENST00000421068.5:ENST00000458220.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	19	473	2	3.47857	4.227465	4.97636	2.45696e-8	1e-12	1.83283e-6	2.25522e-10
chr1	203024181	203024277	666838	0	+	0.5	(0.49,0.53]	chr1	67076	13	UTR3	UTR3:EXON_MRNA	TMEM183A	ENSG00000163444.12	ENST00000367242.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr1	219609840	219609936	1507870	0	-	0.520833	(0.49,0.53]	chr1	150881	2	CDS	CDS:EXON_MRNA	ZC3H11B	ENSG00000215817.7	ENST00000651890.1:ENST00000367211.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr12	26979783	26979859	13268812	0	-	0.513158	(0.49,0.53]	chr12	1039849	1	CDS	CDS:EXON_MRNA:INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000545344.5:ENST00000545303.5:ENST00000537406.1:ENST00000535260.5:ENST00000543882.5:ENST00000541081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr12	112148227	112148304	13094533	0	+	0.519481	(0.49,0.53]	chr12	1021539	3	CDS	CDS:UTR3:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7:ENST00000552890.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr18	23536740	23536808	17037311	0	-	0.514706	(0.49,0.53]	chr18	1400544	2	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000591955.1:ENST00000591075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr5	34830765	34830862	5929870	0	+	0.515464	(0.49,0.53]	chr5	464654	1	UTR3	UTR3:EXON_MRNA	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000428746.6:ENST00000503673.5:ENST00000515799.5:ENST00000506376.1:ENST00000507883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr7	143862801	143862900	9116846	0	-	0.50505	(0.49,0.53]	chr7	696356	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chr9	120852637	120852734	10445871	0	+	0.494845	(0.49,0.53]	chr9	786330	15	EXON_LNCRNA	EXON_LNCRNA	CUTALP	ENSG00000226752.9	ENST00000640327.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	18	2	3.94177	4.2274449999999995	4.51312	0.0104929	0.00156636	0.063428	0.0156889
chrX	135033181	135033272	18865057	0	+	0.615385	(0.59,1]	chrX	1607588	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.11647	4.227235	5.338	0.00535979	3.196e-4	0.0406564	0.00457916
chr1	19197946	19197997	876962	0	-	0.431373	(0.42,0.455]	chr1	90394	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr10	11462240	11462340	11367120	0	-	0.44	(0.42,0.455]	chr10	866869	84	UTR3	UTR3:EXON_MRNA	USP6NL	ENSG00000148429.14	ENST00000609104.5:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr10	12167701	12167801	11370390	0	-	0.43	(0.42,0.455]	chr10	867140	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000476462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr5	140645435	140645510	6871643	0	-	0.426667	(0.42,0.455]	chr5	526112	3	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA2	ENSG00000131495.9	ENST00000510680.1:ENST00000252102.9:ENST00000512088.1:ENST00000502960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr6	27890314	27890381	7649651	0	-	0.447761	(0.42,0.455]	chr6	582835	1	UTR3	UTR3:EXON_MRNA	H3C12	ENSG00000197153.5	ENST00000359303.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr7	29889305	29889356	8199907	0	+	0.45098	(0.42,0.455]	chr7	625486	1	CDS	CDS:EXON_MRNA	WIPF3	ENSG00000122574.11	ENST00000409123.5:ENST00000242140.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr7	99132663	99132762	8944858	0	-	0.424242	(0.42,0.455]	chr7	682807	111	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.05954	4.22711	4.39468	0.00617886	0.00240483	0.0439741	0.0217482
chr10	73243013	73243109	11570203	0	-	0.458333	(0.455,0.49]	chr10	880648	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DNAJC9	ENSG00000213551.7	ENST00000469143.1:ENST00000453189.2:ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	4.17407	4.22707	4.28007	1.754e-5	8.3464e-6	4.38078e-4	2.58924e-4
chr3	181231636	181231736	3936245	0	+	0.33	(0.29,0.33]	chr3	330803	553	INTRON	INTRON	SOX2-OT	ENSG00000242808.10	ENST00000660576.1:ENST00000626948.2:ENST00000643236.2:ENST00000646949.2:ENST00000647552.1:ENST00000643131.2:ENST00000665187.1:ENST00000656613.1:ENST00000645423.2:ENST00000630482.2:ENST00000493116.6:ENST00000645983.1:ENST00000654538.1:ENST00000646683.1:ENST00000493521.5:ENST00000647179.1:ENST00000460739.5:ENST00000665485.1:ENST00000597347.5:ENST00000646841.2:ENST00000671456.1:ENST00000469278.5:ENST00000670501.1:ENST00000644582.1	lncRNA	lncRNA	lncRNA	lncRNA	37	450	2	3.90455	4.227035	4.54952	1.80127e-11	1e-12	2.95315e-9	2.46312e-10
chr2	106697810	106697906	2825358	0	-	0.4375	(0.42,0.455]	chr2	252231	6	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	121	2	4.01767	4.226655	4.43564	1.40258e-7	3.69802e-9	8.38471e-6	3.27788e-7
chr11	61812470	61812569	12406046	0	-	0.575758	(0.53,0.59]	chr11	960631	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5:ENST00000491310.5:ENST00000544696.5:ENST00000466716.5:ENST00000544309.5:ENST00000539419.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	156	2	3.73213	4.226515	4.7209	9.98896e-8	6.47717e-9	6.25052e-6	5.30089e-7
chr2	75660821	75660920	1894617	0	+	0.373737	(0.36,0.39]	chr2	179770	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL19:RP11-342K6.1	ENSG00000115364.14:ENSG00000270696.1	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1:ENST00000604845.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	26	2	3.33241	4.226475	5.12054	0.00193631	7.15553e-5	0.0192272	0.00137393
chr5	33461157	33461226	5927450	0	+	0.289855	[0,0.29]	chr5	464425	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000509410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.87835	4.226255	4.57416	6.75561e-4	1.0775e-4	0.00873562	0.00192514
chr20	35654530	35654629	17955004	0	-	0.626263	(0.59,1]	chr20	1521109	11	CDS	CDS:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.69477	4.226205	5.75764	0.020208	4.53637e-5	0.0978331	9.4617e-4
chr2	112647084	112647162	2001744	0	+	0.538462	(0.53,0.59]	chr2	190004	3	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.11275	4.226115	5.33948	0.00407571	4.08763e-5	0.032143	9.64741e-4
chr6	166064838	166064937	7544955	0	+	0.585859	(0.53,0.59]	chr6	575751	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	GAPDHP72	ENSG00000216624.3	ENST00000638093.1:ENST00000636791.1:ENST00000402643.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	35	2	3.67993	4.226075	4.77222	6.67251e-4	3.22778e-4	0.00867533	0.0046122
chr1	145390355	145390442	1267344	0	-	0.482759	(0.455,0.49]	chr1	124852	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF20	ENSG00000162825.16	ENST00000392971.6:ENST00000369373.9:ENST00000622803.4:ENST00000594479.7:ENST00000620821.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.47671	4.22598	4.97525	0.0368644	1.38474e-4	0.145024	0.00254294
chr4	146326895	146326995	5710839	0	-	0.47	(0.455,0.49]	chr4	452184	5	INTRON	INTRON	SLC10A7	ENSG00000120519.15	ENST00000432059.6:ENST00000335472.12:ENST00000507030.5:ENST00000507560.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.47671	4.22598	4.97525	0.0368644	1.38474e-4	0.145024	0.00254294
chr19	49869621	49869719	17607882	0	-	0.510204	(0.49,0.53]	chr19	1484407	7	UTR3	UTR3:EXON_MRNA:INTRON	PNKP:AKT1S1	ENSG00000039650.12:ENSG00000204673.11	ENST00000629179.1:ENST00000391834.6:ENST00000391833.5:ENST00000344175.10:ENST00000391832.7:ENST00000391835.1:ENST00000391831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.33324	4.225960000000001	5.11868	0.00162947	9.66505e-5	0.0169972	0.00175267
chr22	19851663	19851763	18434687	0	-	0.53	(0.49,0.53]	chr22	1571004	5	CDS	CDS:EXON_MRNA:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.33324	4.225960000000001	5.11868	0.00162947	9.66505e-5	0.0169972	0.00175267
chr13	95166297	95166367	14110846	0	-	0.4	(0.39,0.42]	chr13	1104408	3	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.1206	4.225949999999999	4.3313	0.00597537	0.00209984	0.0428562	0.0204266
chr17	7113124	7113222	16428392	0	-	0.418367	(0.39,0.42]	chr17	1339053	39	INTRON	INTRON	ASGR2	ENSG00000161944.16	ENST00000254850.11:ENST00000355035.9:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.1206	4.225949999999999	4.3313	0.00597537	0.00209984	0.0428562	0.0204266
chr4	28588572	28588671	4773334	0	+	0.40404	(0.39,0.42]	chr4	394592	102	INTRON	INTRON	RP11-123O22.1	ENSG00000250064.1	ENST00000509416.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	4.1206	4.225949999999999	4.3313	0.00597537	0.00209984	0.0428562	0.0204266
chr6	124976085	124976185	7381248	0	+	0.28	[0,0.29]	chr6	565864	41	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	3.28583	4.225205	5.16458	0.00346525	3.97867e-5	0.0293796	8.56316e-4
chr12	110429160	110429259	13537375	0	-	0.606061	(0.59,1]	chr12	1064862	256	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	4	91	2	2.80517	4.22516	5.64515	3.58391e-4	1.07144e-4	0.00501992	0.00206452
chr17	3824469	3824563	16413306	0	-	0.297872	(0.29,0.33]	chr17	1336469	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.64709	4.225155	4.80322	3.76873e-4	2.14303e-4	0.00523508	0.00359478
chr17	1661700	1661790	16401394	0	-	0.466667	(0.455,0.49]	chr17	1334888	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573725.1:ENST00000572445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	3.56037	4.2248	4.88923	5.72551e-4	9.45747e-8	0.0078026	5.31584e-6
chr12	113389013	113389110	13101744	0	+	0.639175	(0.59,1]	chr12	1022448	5	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.65509	4.224795	4.7945	0.0031766	5.95213e-4	0.0279054	0.00746384
chr12	51059830	51059929	12876169	0	+	0.474747	(0.455,0.49]	chr12	1000594	5	UTR3	UTR3:EXON_MRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000552645.5:ENST00000553043.1:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	2	43	2	3.68903	4.224755	4.76048	3.99985e-4	1.71879e-5	0.00588767	4.32994e-4
chr22	35838315	35838413	18495452	0	-	0.438776	(0.42,0.455]	chr22	1577878	15	INTRON	INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000359369.8:ENST00000416721.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	283	2	4.09612	4.224605	4.35309	5.632e-10	3.74034e-12	6.93616e-8	7.28202e-10
chr10	79351509	79351609	11148659	0	+	0.6	(0.59,1]	chr10	847432	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPIF	ENSG00000108179.14	ENST00000225174.8:ENST00000472580.6:ENST00000498681.5:ENST00000448165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.77418	4.224275	5.67437	0.0160729	6.83706e-5	0.0860154	0.00132577
chr18	23556242	23556326	17037524	0	-	0.5	(0.49,0.53]	chr18	1400609	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.88887	4.22408	4.55929	0.00116196	9.98984e-5	0.0130851	0.00180257
chr16	1770936	1770993	15822437	0	-	0.701754	(0.59,1]	chr16	1261527	2	CDS	CDS:UTR3:EXON_MRNA	NME3	ENSG00000103024.8	ENST00000219302.8:ENST00000564628.1:ENST00000561637.5:ENST00000567271.1:ENST00000568561.5:ENST00000563498.1:ENST00000566600.1:ENST00000563367.1:ENST00000565379.1:ENST00000563854.1:ENST00000564252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.62482	4.224035	4.82325	0.002381	7.40647e-4	0.0216895	0.00925967
chr20	57508696	57508788	18021655	0	-	0.456522	(0.455,0.49]	chr20	1527399	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	102	2	3.8173	4.224025	4.63075	7.60804e-7	1.02236e-8	3.51585e-5	7.89931e-7
chr20	57374606	57374703	17836820	0	+	0.474227	(0.455,0.49]	chr20	1508316	1	CDS	CDS:UTR3:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.20069	4.223965	5.24724	0.00285821	3.09759e-5	0.0245841	7.62166e-4
chr8	30352259	30352356	9253455	0	+	0.525773	(0.49,0.53]	chr8	708964	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	11	219	2	4.21319	4.22384	4.23449	9.2164e-10	1.77487e-10	9.79122e-8	2.50657e-8
chr1	149813510	149813581	1286919	0	-	0.71831	(0.59,1]	chr1	127824	3	CDS	CDS:EXON_MRNA	H3C13	ENSG00000183598.4	ENST00000331491.2	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	3.40869	4.223515	5.03834	0.00108238	4.1911e-5	0.0118355	9.83825e-4
chr11	90283412	90283507	12059333	0	+	0.515789	(0.49,0.53]	chr11	929980	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	46	2	3.76703	4.223375	4.67972	6.94757e-4	1.02216e-5	0.00876781	2.82175e-4
chr6	144095236	144095336	8006755	0	-	0.55	(0.53,0.59]	chr6	611843	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SF3B5	ENSG00000169976.7	ENST00000367569.4	protein_coding	protein_coding	protein_coding	protein_coding	5	124	2	4.08751	4.223325	4.35914	1.35059e-7	1.04565e-7	8.11106e-6	5.7906e-6
chr6	17615709	17615806	7618876	0	-	0.402062	(0.39,0.42]	chr6	580511	8	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.05461	4.2232449999999995	5.39188	8.55091e-4	1.75441e-5	0.0105173	4.38078e-4
chr7	100107157	100107245	8949728	0	-	0.579545	(0.53,0.59]	chr7	683568	2	UTR3	UTR3:EXON_MRNA	TAF6	ENSG00000106290.15	ENST00000421980.5:ENST00000453269.7:ENST00000452041.5:ENST00000472509.5:ENST00000344095.8:ENST00000437822.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	3.17542	4.223145000000001	5.27087	3.78824e-4	5.9416e-5	0.00525548	0.00130151
chr5	134661211	134661305	6230187	0	+	0.478723	(0.455,0.49]	chr5	485158	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.93794	4.222995	4.50805	0.00122223	7.43966e-5	0.0135383	0.00142165
chr4	99071552	99071648	5548213	0	-	0.3125	(0.29,0.33]	chr4	443145	7	UTR3	UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	4.19615	4.22274	4.24933	2.2256e-5	1.02924e-5	5.84518e-4	2.83837e-4
chr6	33313693	33313778	7669350	0	-	0.705882	(0.59,1]	chr6	587591	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1:ENST00000476333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	98	2	4.18569	4.222675000000001	4.25966	5.09234e-5	2.95373e-5	0.00114531	6.69635e-4
chr2	187466645	187466741	3070166	0	-	0.28125	[0,0.29]	chr2	271827	26	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	3.717	4.22265	4.7283	8.59267e-7	3.22266e-9	3.90593e-5	2.90975e-7
chr8	97624299	97624396	9962612	0	-	0.56701	(0.53,0.59]	chr8	751672	2	EXON_PSEUDO	EXON_PSEUDO	KB-1683C8.1	ENSG00000213750.4	ENST00000492365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	60	2	3.4868	4.222525	4.95825	2.87508e-4	1.01599e-5	0.00457439	2.80762e-4
chr11	65131131	65131197	12421674	0	-	0.515152	(0.49,0.53]	chr11	963752	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.33324	4.222185	5.11113	0.00162947	1.58109e-8	0.0169972	1.14917e-6
chr12	93083297	93083397	13470824	0	-	0.4	(0.39,0.42]	chr12	1059323	783	INTRON	INTRON	RP11-511B23.2	ENSG00000257322.6	ENST00000550324.5:ENST00000549930.1	lncRNA	lncRNA	lncRNA	lncRNA	2	42	2	2.34349	4.22212	6.10075	0.0169272	1.37224e-7	0.0890655	7.34618e-6
chr6	147706067	147706167	7470318	0	+	0.33	(0.29,0.33]	chr6	571315	132	INTRON	INTRON	SAMD5:RP11-307P5.1	ENSG00000203727.4:ENSG00000227681.5	ENST00000566741.1:ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	33	2	3.31596	4.221895	5.12783	6.3306e-5	5.31593e-5	0.0013601	0.00108035
chr6	10730614	10730666	7048620	0	+	0.442308	(0.42,0.455]	chr6	539766	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	101	2	3.81811	4.22157	4.62503	7.6394e-7	1.11716e-8	3.52166e-5	8.51741e-7
chr10	59791724	59791823	11517216	0	-	0.313131	(0.29,0.33]	chr10	877718	31	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.62683	4.2215050000000005	4.81618	6.18968e-4	2.74489e-4	0.00822794	0.00406677
chr6	56750298	56750398	7753312	0	-	0.4	(0.39,0.42]	chr6	595537	75	INTRON	INTRON	DST	ENSG00000151914.21	ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000361203.7:ENST00000520645.5:ENST00000523967.5:ENST00000449297.6:ENST00000521821.1:ENST00000650917.1:ENST00000522538.5:ENST00000523817.1:ENST00000517937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	3.0503	4.22109	5.39188	0.00570576	1.75441e-5	0.0424438	4.38078e-4
chr7	94695323	94695422	8932631	0	-	0.40404	(0.39,0.42]	chr7	681655	4	EXON_PSEUDO	EXON_PSEUDO	RPS3AP25	ENSG00000232385.2	ENST00000411660.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	29	2	3.0503	4.22109	5.39188	0.00570576	1.75441e-5	0.0424438	4.38078e-4
chr6	2833607	2833707	7570209	0	-	0.44	(0.42,0.455]	chr6	577588	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	3.08182	4.220895	5.35997	6.80627e-4	2.41298e-5	0.00876781	5.6648e-4
chr2	167814851	167814946	2997775	0	-	0.452632	(0.42,0.455]	chr2	265435	2	EXON_LNCRNA	EXON_LNCRNA	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1	lncRNA	lncRNA	lncRNA	lncRNA	3	51	2	3.42604	4.22083	5.01562	1.01971e-4	1.46189e-5	0.0019861	3.76794e-4
chr8	47821603	47821697	9815973	0	-	0.404255	(0.39,0.42]	chr8	742573	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	3.12234	4.220275	5.31821	1.28898e-4	2.16023e-9	0.0024153	2.06314e-7
chr1	219981377	219981457	1510798	0	-	0.4625	(0.455,0.49]	chr1	150994	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.1179	4.22022	6.32254	0.00480128	2.62373e-8	0.0370496	1.77777e-6
chr1	21875687	21875747	891221	0	-	0.683333	(0.59,1]	chr1	92515	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.89841	4.22012	4.54183	0.0070583	1.91539e-4	0.0478044	0.00304814
chr19	40609529	40609595	17330310	0	+	0.69697	(0.59,1]	chr19	1435980	1	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	3.89841	4.22012	4.54183	0.0070583	1.91539e-4	0.0478044	0.00304814
chr12	68841947	68842047	12941208	0	+	0.38	(0.36,0.39]	chr12	1008678	22	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	MDM2:RP11-611O2.3	ENSG00000135679.26:ENSG00000256664.1	ENST00000258149.11:ENST00000537570.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	36	2	2.63521	4.220075	5.80494	0.00633242	9.78955e-7	0.0446708	3.91899e-5
chr5	95898524	95898619	6719578	0	-	0.515789	(0.49,0.53]	chr5	517193	4	CDS	CDS:EXON_MRNA	ELL2	ENSG00000118985.16	ENST00000237853.9	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.72252	4.2198649999999995	5.71721	0.0161474	2.77472e-6	0.0860154	9.47025e-5
chr9	111451424	111451489	10799095	0	-	0.4	(0.39,0.42]	chr9	817968	1	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.19588	4.219785	5.24369	0.00321212	4.15285e-5	0.0280721	8.8376e-4
chr6	31797485	31797575	7662593	0	-	0.522222	(0.49,0.53]	chr6	585349	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	3.64815	4.219505	4.79086	4.20783e-4	2.96068e-6	0.00611538	9.96361e-5
chr11	61303949	61304035	12403928	0	-	0.534884	(0.53,0.59]	chr11	960187	2	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	3.2401	4.219465	5.19883	8.7034e-5	5.1985e-5	0.00177086	0.00106081
chr2	126557798	126557889	2864146	0	-	0.351648	(0.33,0.36]	chr2	255780	5	EXON_PSEUDO	EXON_PSEUDO	YWHAZP2	ENSG00000213236.3	ENST00000440317.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	3.473	4.218935	4.96487	8.77304e-4	9.26851e-5	0.0101202	0.00185187
chr9	120817612	120817709	10833865	0	-	0.402062	(0.39,0.42]	chr9	820467	17	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.44923	4.21874	4.98825	0.00105208	1.62756e-4	0.0123035	0.00266622
chr13	29509512	29509611	13945168	0	-	0.414141	(0.39,0.42]	chr13	1094548	2	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.3298	4.218705	5.10761	0.00165391	5.12039e-5	0.0163614	0.00114668
chr10	51698769	51698866	11490829	0	-	0.536082	(0.53,0.59]	chr10	876946	11	CDS	CDS:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr11	65571554	65571634	11985207	0	+	0.575	(0.53,0.59]	chr11	920510	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ZNRD2	ENSG00000173465.8	ENST00000531405.5:ENST00000309328.8:ENST00000527920.5:ENST00000526877.1:ENST00000533115.5:ENST00000526433.1:ENST00000527413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr15	47730440	47730539	15259483	0	-	0.545455	(0.53,0.59]	chr15	1203448	4	EXON_PSEUDO	EXON_PSEUDO	CTD-2270N23.1	ENSG00000213862.4	ENST00000497325.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr16	85523098	85523198	15796550	0	+	0.55	(0.53,0.59]	chr16	1256988	324	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr17	49703187	49703240	16582925	0	-	0.54717	(0.53,0.59]	chr17	1362550	1	CDS	CDS:UTR3:EXON_MRNA	SLC35B1	ENSG00000121073.15	ENST00000649906.1:ENST00000240333.12:ENST00000504260.5:ENST00000502406.5:ENST00000507477.1:ENST00000507773.6:ENST00000503334.5:ENST00000508520.5:ENST00000502268.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr17	59210248	59210346	16293008	0	+	0.571429	(0.53,0.59]	chr17	1321380	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-2510F5.6:SMG8	ENSG00000265303.1:ENSG00000167447.13	ENST00000577660.1:ENST00000543872.6:ENST00000578922.1:ENST00000580498.5:ENST00000300917.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr3	183920225	183920323	4621750	0	-	0.540816	(0.53,0.59]	chr3	381491	4	UTR3	UTR3:EXON_MRNA	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr5	150534943	150535021	6295476	0	+	0.564103	(0.53,0.59]	chr5	491398	2	CDS	CDS:EXON_MRNA	NDST1	ENSG00000070614.15	ENST00000523767.5:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr7	16462647	16462726	8702272	0	-	0.531646	(0.53,0.59]	chr7	664605	1	CDS	CDS:EXON_MRNA:INTRON	CRPPA:SOSTDC1	ENSG00000214960.11:ENSG00000171243.8	ENST00000675257.1:ENST00000674759.1:ENST00000307068.5:ENST00000396652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr8	43126435	43126534	9308538	0	+	0.585859	(0.53,0.59]	chr8	712880	37	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.99819	4.21841	4.43863	0.0111308	0.00254763	0.0665375	0.0233955
chr19	1918939	1918990	17194509	0	+	0.647059	(0.59,1]	chr19	1412485	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SCAMP4	ENSG00000227500.10	ENST00000452128.6:ENST00000414057.6:ENST00000460767.5:ENST00000316097.13:ENST00000489554.1:ENST00000409472.5:ENST00000411971.5:ENST00000621748.1:ENST00000585335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.36223	4.21838	5.07453	0.00203572	0.00117617	0.0192213	0.0132131
chr7	857827	857892	8093747	0	+	0.6	(0.59,1]	chr7	618457	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	3.36223	4.21838	5.07453	0.00203572	0.00117617	0.0192213	0.0132131
chr1	109340723	109340801	1219750	0	-	0.589744	(0.53,0.59]	chr1	118990	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr1	161212350	161212415	499176	0	+	0.538462	(0.53,0.59]	chr1	54031	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr10	95291003	95291012	11630314	0	-	0.555556	(0.53,0.59]	chr10	885764	1	EXON_LNCRNA	EXON_LNCRNA	PDLIM1	ENSG00000107438.9	ENST00000477757.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr11	314456	314551	11756470	0	+	0.547368	(0.53,0.59]	chr11	897768	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000528780.5:ENST00000328221.5:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1:ENST00000525554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr16	18543692	18543769	15876732	0	-	0.545455	(0.53,0.59]	chr16	1269209	2	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr19	49556933	49556993	17606662	0	-	0.55	(0.53,0.59]	chr19	1484050	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOSIP	ENSG00000142546.14	ENST00000596358.6:ENST00000339093.7:ENST00000598820.5:ENST00000601015.5:ENST00000601340.5:ENST00000596477.1:ENST00000598550.5:ENST00000599537.5:ENST00000598296.5:ENST00000594932.5:ENST00000600019.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr2	25740233	25740332	2563617	0	-	0.555556	(0.53,0.59]	chr2	230351	66	UTR3	UTR3:EXON_MRNA	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr5	172935248	172935310	6387514	0	+	0.564516	(0.53,0.59]	chr5	496120	2	CDS	CDS:EXON_MRNA	ERGIC1	ENSG00000113719.16	ENST00000393784.8:ENST00000520399.1:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr6	30676974	30677072	7658825	0	-	0.581633	(0.53,0.59]	chr6	584161	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615892.4:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr6	31412039	31412132	7114587	0	+	0.580645	(0.53,0.59]	chr6	545622	2	CDS	CDS:EXON_MRNA:INTRON	MICA:XXbac-BPG181B23.9	ENSG00000204520.14:ENSG00000288587.1	ENST00000616296.4:ENST00000674069.1:ENST00000673857.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr7	2729989	2730088	8651858	0	-	0.575758	(0.53,0.59]	chr7	661376	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000407653.1:ENST00000496740.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr7	23312263	23312361	8724209	0	-	0.530612	(0.53,0.59]	chr7	666009	22	UTR3	UTR3:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr8	143991691	143991747	9649799	0	+	0.571429	(0.53,0.59]	chr8	731405	1	CDS	CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000529301.5:ENST00000531992.1:ENST00000534791.5:ENST00000525513.1:ENST00000533044.5:ENST00000527194.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chrX	48906437	48906508	19063538	0	-	0.535211	(0.53,0.59]	chrX	1620564	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7:ENST00000446885.1:ENST00000635238.1:ENST00000634665.1:ENST00000635015.1:ENST00000376512.2:ENST00000634461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	4.00393	4.2183600000000006	4.43279	0.0108084	0.0026472	0.064368	0.0231864
chr2	112647393	112647464	2001749	0	+	0.478873	(0.455,0.49]	chr2	190008	2	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.56037	4.21835	4.87633	5.72551e-4	2.95855e-4	0.0078026	0.00432147
chr11	111853648	111853704	12603215	0	-	0.446429	(0.42,0.455]	chr11	977132	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ALG9:RP11-108O10.8	ENSG00000086848.15:ENSG00000258529.5	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000613181.4:ENST00000527714.5:ENST00000618252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	4.03383	4.2182949999999995	4.40276	0.0017618	4.24324e-5	0.0180053	8.98949e-4
chr7	27526213	27526313	8739202	0	-	0.49	(0.455,0.49]	chr7	667103	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.46389	4.218235	4.97258	9.14164e-4	1.84876e-4	0.0110519	0.00296795
chr15	65869520	65869585	14982137	0	+	0.707692	(0.59,1]	chr15	1177715	2	UTR5	UTR5:EXON_MRNA:INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000568850.5:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.84944	4.217715	5.58599	0.0128238	1.04372e-4	0.0719798	0.00186841
chr10	74119366	74119466	11117661	0	+	0.44	(0.42,0.455]	chr10	846311	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	4.09205	4.21769	4.34333	5.37112e-6	8.17459e-8	1.79904e-4	4.70699e-6
chr1	110899831	110899922	405642	0	+	0.241758	[0,0.29]	chr1	39842	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.47088	4.217595	4.96431	0.0015572	1.20737e-4	0.0165415	0.00210079
chr9	92031710	92031804	10735626	0	-	0.255319	[0,0.29]	chr9	812061	7	UTR3	UTR3:EXON_MRNA:INTRON	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.47088	4.217595	4.96431	0.0015572	1.20737e-4	0.0165415	0.00210079
chr19	18386377	18386466	17258376	0	+	0.640449	(0.59,1]	chr19	1425378	2	CDS	CDS:EXON_MRNA:PRIMIRNA	GDF15:MIR3189	ENSG00000130513.6:ENSG00000264175.1	ENST00000595973.2:ENST00000578735.1:ENST00000252809.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	9	345	2	4.15967	4.21741	4.27515	1.36293e-6	5.22139e-9	5.71187e-5	4.41505e-7
chr13	49660869	49660967	14019768	0	-	0.306122	(0.29,0.33]	chr13	1099592	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.97941	4.217375	4.45534	0.00110984	5.81801e-5	0.0127344	0.00116944
chr1	113168993	113169075	413748	0	+	0.512195	(0.49,0.53]	chr1	40852	1	EXON_PSEUDO	EXON_PSEUDO	RP11-389O22.4	ENSG00000233839.1	ENST00000457967.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	3.7546	4.21716	4.67972	6.94757e-4	2.09468e-4	0.00876781	0.00327655
chr15	66716420	66716498	14985541	0	+	0.5	(0.49,0.53]	chr15	1178072	1	CDS	CDS:EXON_MRNA	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5:ENST00000558937.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.7546	4.21716	4.67972	6.94757e-4	2.09468e-4	0.00876781	0.00327655
chr17	80138141	80138210	16704265	0	-	0.492754	(0.49,0.53]	chr17	1376655	1	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000647795.1:ENST00000576547.2:ENST00000575668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	3.7546	4.21716	4.67972	6.94757e-4	2.09468e-4	0.00876781	0.00327655
chr2	231256166	231256236	2424827	0	+	0.557143	(0.53,0.59]	chr2	218486	2	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	ARMC9:RPS28P4	ENSG00000135931.19:ENSG00000237039.1	ENST00000349938.8:ENST00000683165.1:ENST00000611582.5:ENST00000683275.1:ENST00000682002.1:ENST00000682334.1:ENST00000682027.1:ENST00000683271.1:ENST00000436339.6:ENST00000683702.1:ENST00000684011.1:ENST00000683107.1:ENST00000684432.1:ENST00000684565.1:ENST00000684051.1:ENST00000682100.1:ENST00000682367.1:ENST00000683063.1:ENST00000683112.1:ENST00000683814.1:ENST00000682233.1:ENST00000682030.1:ENST00000684718.1:ENST00000683321.1:ENST00000683040.1:ENST00000683966.1:ENST00000683553.1:ENST00000684368.1:ENST00000682264.1:ENST00000683575.1:ENST00000683629.1:ENST00000469789.2:ENST00000683520.1:ENST00000441378.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	4	96	2	3.83102	4.21713	4.6032400000000004	1.08833e-6	8.16599e-7	4.73591e-5	3.36299e-5
chr14	49585947	49585998	14613983	0	-	0.509804	(0.49,0.53]	chr14	1144056	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2:ENST00000557519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	190	2	3.74758	4.2171199999999995	4.68666	5.90266e-9	2.37073e-9	5.35581e-7	2.23542e-7
chr19	8485691	8485780	17220827	0	+	0.707865	(0.59,1]	chr19	1417692	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000597270.1:ENST00000597081.1:ENST00000598603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.9228	4.21666	5.51052	0.00981698	0.00019737500000000001	0.0612992	0.00336487
chr15	57715274	57715373	14953482	0	+	0.393939	(0.39,0.42]	chr15	1175290	7	UTR3	UTR3:EXON_MRNA:INTRON	POLR2M	ENSG00000255529.9	ENST00000482852.5:ENST00000299638.8:ENST00000380557.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.93975	4.216495	4.49324	0.0105893	0.00108192	0.0644466	0.0124943
chr16	68226670	68226769	15715284	0	+	0.393939	(0.39,0.42]	chr16	1251066	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3:RP11-96D1.10	ENSG00000072736.19:ENSG00000263276.1	ENST00000563319.5:ENST00000566301.5:ENST00000346183.8:ENST00000349223.9:ENST00000329524.8:ENST00000562926.5:ENST00000563796.5:ENST00000563288.5:ENST00000535127.2:ENST00000571975.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	16	2	3.93975	4.216495	4.49324	0.0105893	0.00108192	0.0644466	0.0124943
chr2	178507979	178508079	2234404	0	+	0.42	(0.39,0.42]	chr2	203987	42	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.93975	4.216495	4.49324	0.0105893	0.00108192	0.0644466	0.0124943
chr22	40324637	40324737	18376135	0	+	0.4	(0.39,0.42]	chr22	1563732	15	UTR3	UTR3:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.93975	4.216495	4.49324	0.0105893	0.00108192	0.0644466	0.0124943
chrX	155299090	155299145	19283515	0	-	0.472727	(0.455,0.49]	chrX	1639112	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5:ENST00000321926.4:ENST00000491205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.92463	4.21634	4.50805	0.0113417	0.00122223	0.0665375	0.0135383
chr15	68779693	68779790	15359854	0	-	0.474227	(0.455,0.49]	chr15	1213200	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000486054.1:ENST00000267918.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	3.9525	4.21628	4.48006	2.64659e-6	3.88353e-8	9.98197e-5	2.4824e-6
chr17	46171745	46171844	16566921	0	-	0.484848	(0.455,0.49]	chr17	1360780	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	3.12843	4.21617	5.30391	0.00392855	3.12735e-5	0.0322851	6.97306e-4
chr3	33093308	33093402	4111936	0	-	0.478723	(0.455,0.49]	chr3	343556	5	CDS	CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	3.12843	4.21617	5.30391	0.00392855	3.12735e-5	0.0322851	6.97306e-4
chr17	47670701	47670766	16251852	0	+	0.507692	(0.49,0.53]	chr17	1316708	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	2.21413	4.2160899999999994	6.21805	0.00995539	7.46967e-8	0.0621728	4.33833e-6
chr6	31781690	31781761	7662427	0	-	0.521127	(0.49,0.53]	chr6	585280	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1:ENST00000482996.5:ENST00000479051.1:ENST00000459667.1:ENST00000461874.1:ENST00000474643.5:ENST00000483275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	3.35133	4.21597	5.08061	0.00150139	1.00361e-4	0.0152367	0.00196575
chr3	184325035	184325114	3949243	0	+	0.493671	(0.49,0.53]	chr3	332444	3	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000448284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.4415	4.21592	4.99034	9.98297e-4	1.6002e-4	0.0111246	0.00286408
chr2	216138088	216138179	2380036	0	+	0.417582	(0.39,0.42]	chr2	213817	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	3.93679	4.21582	4.49485	3.23284e-6	1.93637e-6	1.18341e-4	6.9799e-5
chr7	100604044	100604130	8427967	0	+	0.709302	(0.59,1]	chr7	643248	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000496269.1:ENST00000462260.1:ENST00000482863.1:ENST00000487172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.9891200000000002	4.21574	5.44236	0.00823979	2.02004e-4	0.0540283	0.00317801
chr3	180912617	180912685	3933077	0	+	0.573529	(0.53,0.59]	chr3	330643	3	UTR5	UTR5:EXON_MRNA:INTRON	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000484790.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000491674.1:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000479176.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.90978	4.21573	5.52168	0.00857883	1.48967e-5	0.0552386	3.81697e-4
chr16	70554521	70554597	15729983	0	+	0.565789	(0.53,0.59]	chr16	1252955	2	CDS	CDS:UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567635.5:ENST00000567250.5:ENST00000568291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.39416	4.215605	5.03705	0.00126006	0.00020199200000000001	0.013837	0.00317801
chr2	135651956	135652032	2082217	0	+	0.552632	(0.53,0.59]	chr2	195340	4	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000487294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.39416	4.215605	5.03705	0.00126006	0.00020199200000000001	0.013837	0.00317801
chr7	56078101	56078159	8290717	0	+	0.551724	(0.53,0.59]	chr7	631559	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000461912.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.39416	4.215605	5.03705	0.00126006	0.00020199200000000001	0.013837	0.00317801
chr19	3465149	3465249	17202175	0	+	0.24	[0,0.29]	chr19	1413755	25	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.99212	4.21557	5.43902	0.0069187	4.82253e-6	0.0473262	1.6551e-4
chr13	41060737	41060837	13989277	0	-	0.56	(0.53,0.59]	chr13	1097162	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ELF1	ENSG00000120690.16	ENST00000405737.2	protein_coding	protein_coding	protein_coding	protein_coding	490	10697	2	4.0012	4.215535	4.42987	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	21843367	21843438	890840	0	-	0.647887	(0.59,1]	chr1	92326	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.66274	4.215505	5.76827	0.00482151	5.97759e-5	0.0365653	0.00130766
chr2	27041027	27041122	1690681	0	+	0.568421	(0.53,0.59]	chr2	165370	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	140	2	3.69074	4.215434999999999	4.74013	4.91328e-7	5.4655e-9	2.43765e-5	4.61029e-7
chr1	119496658	119496749	1252483	0	-	0.461538	(0.455,0.49]	chr1	122625	10	EXON_PSEUDO	EXON_PSEUDO	GAPDHP58	ENSG00000229570.2	ENST00000438477.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr3	42223834	42223932	3434985	0	+	0.469388	(0.455,0.49]	chr3	298731	2	UTR3	UTR3:EXON_MRNA	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr3	187078061	187078160	3960086	0	+	0.484848	(0.455,0.49]	chr3	334036	24	UTR3	UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr4	55364187	55364271	4842931	0	+	0.47619	(0.455,0.49]	chr4	398891	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SRD5A3:RP11-177J6.2	ENSG00000128039.13:ENSG00000288695.1	ENST00000679836.1:ENST00000679707.1:ENST00000264228.9:ENST00000679351.1:ENST00000680700.1:ENST00000505210.1:ENST00000678717.1:ENST00000514398.1:ENST00000677177.2:ENST00000677217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr5	126870632	126870732	6810782	0	-	0.48	(0.455,0.49]	chr5	521343	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000506088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr7	88639013	88639106	8374954	0	+	0.473118	(0.455,0.49]	chr7	638460	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC002127.4:EEF1A1P28	ENSG00000233420.2:ENSG00000237709.1	ENST00000663862.1:ENST00000450915.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr7	101204299	101204397	8953614	0	-	0.469388	(0.455,0.49]	chr7	684645	8	EXON_PSEUDO	EXON_PSEUDO	RPSAP46	ENSG00000213394.3	ENST00000428316.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr7	135643191	135643274	8553288	0	+	0.481928	(0.455,0.49]	chr7	652893	1	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr8	79919100	79919148	9907701	0	-	0.479167	(0.455,0.49]	chr8	748432	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPS28:RP11-26J3.4	ENSG00000147586.10:ENSG00000276418.5	ENST00000276585.9:ENST00000519386.5:ENST00000522938.5:ENST00000521434.5:ENST00000521605.1:ENST00000519120.1:ENST00000520946.1:ENST00000518271.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr9	8713398	8713487	10177837	0	+	0.460674	(0.455,0.49]	chr9	766509	2	EXON_PSEUDO	EXON_PSEUDO	RP11-134K1.2	ENSG00000212695.5	ENST00000391389.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.0204	4.2154050000000005	4.41041	0.00736097	0.00218771	0.0490627	0.0202707
chr17	75033848	75033932	16352977	0	+	0.595238	(0.59,1]	chr17	1326896	4	SS3_PROX	SS3_PROX:INTRON	KCTD2	ENSG00000180901.11	ENST00000579242.5:ENST00000582840.5:ENST00000584767.5:ENST00000584570.5:ENST00000581589.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	3.46006	4.215105	4.97015	0.00140057	1.47498e-4	0.0144327	0.00269445
chr12	57746178	57746256	12904469	0	+	0.397436	(0.39,0.42]	chr12	1005943	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	TSPAN31	ENSG00000135452.10	ENST00000553221.5:ENST00000547311.5:ENST00000550528.5:ENST00000547992.5:ENST00000257910.8:ENST00000553089.5:ENST00000552816.5:ENST00000549052.5:ENST00000546993.5:ENST00000547472.5:ENST00000548093.5:ENST00000548167.1:ENST00000550791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.14886	4.21507	4.28128	0.00415881	0.00342611	0.0325842	0.0283456
chr14	30963162	30963261	14567690	0	-	0.40404	(0.39,0.42]	chr14	1141267	66	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.14886	4.21507	4.28128	0.00415881	0.00342611	0.0325842	0.0283456
chr5	111102344	111102399	6144446	0	+	0.4	(0.39,0.42]	chr5	480169	1	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000505303.5:ENST00000513710.4:ENST00000504122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.14886	4.21507	4.28128	0.00415881	0.00342611	0.0325842	0.0283456
chr6	42678603	42678669	7152367	0	+	0.393939	(0.39,0.42]	chr6	552050	2	CDS	CDS:EXON_MRNA	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.14886	4.21507	4.28128	0.00415881	0.00342611	0.0325842	0.0283456
chr7	66988271	66988370	8837427	0	-	0.414141	(0.39,0.42]	chr7	674997	7	UTR3	UTR3:EXON_MRNA	SBDS	ENSG00000126524.10	ENST00000246868.7:ENST00000414306.5:ENST00000617799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.4261	4.215005	5.00391	0.00107164	9.12714e-5	0.0118238	0.00182992
chr1	108937332	108937418	1217928	0	-	0.534884	(0.53,0.59]	chr1	118631	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	3.2308500000000002	4.214840000000001	5.19883	2.81517e-4	8.7034e-5	0.00415519	0.00177086
chr2	63684547	63684628	1850151	0	+	0.45679	(0.455,0.49]	chr2	175445	4	EXON_PSEUDO	EXON_PSEUDO	RPL27P6	ENSG00000234488.1	ENST00000411843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	35	2	4.20189	4.214705	4.22752	0.00397662	1.24055e-5	0.0322851	3.28918e-4
chr3	43366905	43366974	4143547	0	-	0.521739	(0.49,0.53]	chr3	346402	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.23006	4.2144449999999996	5.19883	0.00253719	6.30063e-5	0.0233955	0.00124286
chr6	4894774	4894874	7021423	0	+	0.45	(0.42,0.455]	chr6	538414	20	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.56851	4.2144449999999996	4.86038	3.34791e-4	3.9883e-5	0.00472923	9.51945e-4
chr9	108939783	108939881	10410696	0	+	0.5	(0.49,0.53]	chr9	784083	2	UTR3	UTR3:EXON_MRNA:INTRON	ABITRAM	ENSG00000119328.12	ENST00000322940.11:ENST00000374624.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.23006	4.2144449999999996	5.19883	0.00253719	6.30063e-5	0.0233955	0.00124286
chr7	6469674	6469754	8664748	0	-	0.4375	(0.42,0.455]	chr7	662838	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1:ENST00000382267.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	181	2	3.88919	4.2144200000000005	4.53965	6.92374e-8	3.09512e-11	4.51791e-6	4.77169e-9
chr12	110436619	110436683	13537454	0	-	0.390625	(0.39,0.42]	chr12	1064874	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-478C19.2:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000467622.2:ENST00000426440.5:ENST00000476566.1:ENST00000547365.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	4	80	2	4.12728	4.214365	4.30145	7.39643e-6	5.74168e-8	2.35326e-4	3.4609e-6
chrX	73223210	73223297	18738610	0	+	0.471264	(0.455,0.49]	chrX	1599228	2	EXON_PSEUDO	EXON_PSEUDO	TOMM20P4	ENSG00000230311.2	ENST00000427861.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	40	2	2.30139	4.21432	6.12725	0.0530131	1.23635e-7	0.195536	6.7072e-6
chr11	70371424	70371522	12006585	0	+	0.479592	(0.455,0.49]	chr11	924761	2	EXON_MRNA	EXON_MRNA:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000638133.1:ENST00000530548.5:ENST00000525922.2:ENST00000531657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	3.67042	4.214230000000001	4.75804	2.46218e-6	2.37841e-7	8.56868e-5	1.32405e-5
chr6	17625896	17625985	7618981	0	-	0.460674	(0.455,0.49]	chr6	580528	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.26623	4.21419	5.16215	2.31662e-4	5.04348e-5	0.00354314	0.00113788
chr10	71834438	71834505	11563406	0	-	0.61194	(0.59,1]	chr10	880025	2	CDS	CDS:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	7	264	2	3.92328	4.2141	4.50492	3.05762e-7	1.39795e-7	1.63422e-5	7.45635e-6
chr5	82277852	82277951	6673014	0	-	0.393939	(0.39,0.42]	chr5	515072	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5:ENST00000503605.1:ENST00000511844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.8388	4.213915	5.58903	6.72604e-4	5.14263e-6	0.00873144	1.58468e-4
chr3	14481670	14481755	3320797	0	+	0.517647	(0.49,0.53]	chr3	292279	1	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	1.64924	4.21385	6.77846	0.0286659	4.23567e-10	0.126175	5.39328e-8
chr1	116400933	116401006	423921	0	+	0.616438	(0.59,1]	chr1	41837	2	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1	protein_coding	protein_coding	protein_coding	protein_coding	7	352	2	3.34787	4.213385	5.0789	5.88578e-5	5.87025e-11	0.00129586	8.47341e-9
chr15	43765949	43766012	14896490	0	+	0.380952	(0.36,0.39]	chr15	1171290	2	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	244	2	3.45465	4.21335	4.97205	3.51317e-6	1e-12	1.26792e-4	2.25522e-10
chr2	70662234	70662333	2726135	0	-	0.535354	(0.53,0.59]	chr2	242862	56	UTR3	UTR3:EXON_MRNA:INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.86809	4.213345	4.5586	0.00161229	1.18973e-4	0.0169168	0.00207755
chr5	121616246	121616339	6184089	0	+	0.537634	(0.53,0.59]	chr5	482245	1	EXON_PSEUDO	EXON_PSEUDO	RP11-510I6.2	ENSG00000213661.3	ENST00000466718.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.86809	4.213345	4.5586	0.00161229	1.18973e-4	0.0169168	0.00207755
chr10	68977608	68977688	11093349	0	+	0.55	(0.53,0.59]	chr10	843282	2	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.30943	4.21325	5.11707	0.0018255	1.35965e-4	0.0183913	0.00231202
chr13	20961505	20961604	13633278	0	+	0.535354	(0.53,0.59]	chr13	1074745	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP54	ENSG00000213621.3	ENST00000454001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	34	2	3.30943	4.21325	5.11707	0.0018255	1.35965e-4	0.0183913	0.00231202
chr11	61353812	61353912	12404419	0	-	0.55	(0.53,0.59]	chr11	960324	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000540139.5:ENST00000542361.5:ENST00000537364.5:ENST00000535177.1:ENST00000539128.5:ENST00000538263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.38347	4.2132249999999996	5.04298	0.00132446	1.91383e-4	0.0138834	0.0032874
chr7	66958355	66958453	8307740	0	+	0.581633	(0.53,0.59]	chr7	633399	30	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.38347	4.2132249999999996	5.04298	0.00132446	1.91383e-4	0.0138834	0.0032874
chrX	142203702	142203794	19261785	0	-	0.576087	(0.53,0.59]	chrX	1636101	9	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.38347	4.2132249999999996	5.04298	0.00132446	1.91383e-4	0.0138834	0.0032874
chr8	22421756	22421854	9225039	0	+	0.316327	(0.29,0.33]	chr8	705707	22	UTR3	UTR3:EXON_MRNA:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.62312	4.21317	4.80322	0.0222826	2.14303e-4	0.104593	0.00359478
chr2	9591453	9591515	2508232	0	-	0.322581	(0.29,0.33]	chr2	226368	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.10761	4.212680000000001	5.31775	6.03128e-4	1.06766e-5	0.00754033	3.17854e-4
chr5	56504896	56504984	6587866	0	-	0.477273	(0.455,0.49]	chr5	510045	4	EXON_PSEUDO	EXON_PSEUDO	RPL26P19	ENSG00000226221.1	ENST00000450941.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	53	2	2.25667	4.212575	6.16848	0.00445666	8.97995e-8	0.0346553	5.08654e-6
chr9	35061096	35061179	10638110	0	-	0.578313	(0.53,0.59]	chr9	804516	2	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	4.1945	4.21236	4.23022	1.72205e-5	1.38676e-5	4.72777e-4	3.5918e-4
chr7	100099076	100099139	8949692	0	-	0.507937	(0.49,0.53]	chr7	683551	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	3.76099	4.21235	4.66371	2.00194e-4	5.91374e-7	0.0034021	2.55031e-5
chr1	167765659	167765749	524349	0	+	0.577778	(0.53,0.59]	chr1	56254	2	CDS	CDS:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.7898	4.21227	5.63474	0.0128364	7.53339e-6	0.0719798	2.17987e-4
chr12	52951730	52951793	12884264	0	+	0.571429	(0.53,0.59]	chr12	1001702	1	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5:ENST00000546656.1:ENST00000548496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.7898	4.21227	5.63474	0.0128364	7.53339e-6	0.0719798	2.17987e-4
chr16	81670445	81670545	15771669	0	+	0.58	(0.53,0.59]	chr16	1255519	2	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.7898	4.21227	5.63474	0.0128364	7.53339e-6	0.0719798	2.17987e-4
chr12	45554659	45554758	13311933	0	-	0.393939	(0.39,0.42]	chr12	1043346	1	INTRON	INTRON	RP11-352M15.1	ENSG00000257657.3	ENST00000551229.3	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	4.17061	4.21218	4.25375	1.03195e-5	5.05646e-7	2.84226e-4	2.49522e-5
chr15	41303536	41303636	14885456	0	+	0.34	(0.33,0.36]	chr15	1169280	56	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	27	2	3.9015	4.21208	4.52266	8.34989e-4	9.11613e-5	0.0102956	0.00168187
chr7	66702295	66702395	8306083	0	+	0.47	(0.455,0.49]	chr7	633219	197	INTRON	INTRON	RP11-792A8.5:RABGEF1	ENSG00000284461.2:ENSG00000154710.18	ENST00000503687.2:ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	29	2	3.65079	4.211985	4.77318	4.7888e-4	3.61776e-4	0.00628636	0.00544764
chr10	73380030	73380115	11571448	0	-	0.470588	(0.455,0.49]	chr10	880871	1	CDS	CDS:EXON_MRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	4.06083	4.21195	4.36307	0.00218641	3.56832e-5	0.0208941	7.81595e-4
chr1	150965854	150965952	1291363	0	-	0.510204	(0.49,0.53]	chr1	128670	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	360	2	3.92783	4.211375	4.49492	9.55794e-11	1.86862e-12	1.44353e-8	3.94868e-10
chr6	125276045	125276145	7932921	0	-	0.36	(0.33,0.36]	chr6	607258	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HDDC2	ENSG00000111906.18	ENST00000608456.5:ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000609021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	238	2	3.73974	4.210295	4.68085	3.25812e-10	1e-12	3.88482e-8	2.46312e-10
chr11	59551748	59551848	11958575	0	+	0.49	(0.455,0.49]	chr11	915353	54	INTRON	INTRON	CMB9-60A24.1	ENSG00000287264.1	ENST00000659845.1	lncRNA	lncRNA	lncRNA	lncRNA	37	646	2	3.87853	4.210265	4.542	1.07826e-11	1e-12	1.86138e-9	2.46312e-10
chr19	10284402	10284487	17224633	0	+	0.6	(0.59,1]	chr19	1418502	1	CDS	CDS:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.24397	4.210045	6.17612	0.0206682	4.87365e-6	0.0997234	1.51951e-4
chr4	121818110	121818177	5626277	0	-	0.41791	(0.39,0.42]	chr4	448535	2	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	3.99352	4.209125	4.42473	3.06235e-6	2.93379e-8	1.13887e-4	1.96044e-6
chr16	74453071	74453166	16030998	0	-	0.515789	(0.49,0.53]	chr16	1287251	11	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.49797	4.208985	5.92	0.00843736	6.89283e-7	0.0546021	2.91313e-5
chrX	53379705	53379804	19076619	0	-	0.414141	(0.39,0.42]	chrX	1622486	57	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	3.8315	4.2086749999999995	4.58585	7.07508e-6	1.48311e-8	2.27834e-4	1.08841e-6
chr17	80831721	80831821	16376736	0	+	0.49	(0.455,0.49]	chr17	1331104	81	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	3.08961	4.2086	5.32759	0.00445157	1.92345e-5	0.0340751	5.18397e-4
chr17	59673646	59673709	16295368	0	+	0.380952	(0.36,0.39]	chr17	1321691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	3.60784	4.20816	4.80848	3.79774e-5	1.65455e-7	9.11358e-4	8.63103e-6
chr1	33324290	33324386	925694	0	-	0.666667	(0.59,1]	chr1	97633	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHC2	ENSG00000134686.19	ENST00000431992.5:ENST00000683057.1:ENST00000257118.5:ENST00000373422.7:ENST00000373418.7:ENST00000485928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr1	113199084	113199171	413756	0	+	0.597701	(0.59,1]	chr1	40853	4	EXON_PSEUDO	EXON_PSEUDO	RP11-389O22.5	ENSG00000236887.1	ENST00000412567.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr12	110429858	110429958	13537382	0	-	0.7	(0.59,1]	chr12	1064862	263	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr17	82238820	82238898	16382705	0	+	0.653846	(0.59,1]	chr17	1332461	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000578684.6:ENST00000577650.6:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr2	230878099	230878158	2422248	0	+	0.627119	(0.59,1]	chr2	218125	1	UTR3	UTR3:EXON_MRNA	ITM2C	ENSG00000135916.16	ENST00000326427.11:ENST00000335005.10:ENST00000326407.10:ENST00000409704.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr3	51971570	51971670	4181219	0	-	0.69	(0.59,1]	chr3	352445	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PCBP4:RP11-155D18.12:ABHD14B	ENSG00000090097.22:ENSG00000272762.5:ENSG00000114779.20	ENST00000489595.6:ENST00000488257.2:ENST00000483233.5:ENST00000315877.14:ENST00000361143.10:ENST00000487005.1:ENST00000395008.6:ENST00000461108.5:ENST00000525795.1:ENST00000473912.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr9	137552323	137552395	10515906	0	+	0.652778	(0.59,1]	chr9	797447	3	CDS	CDS:EXON_MRNA	MRPL41	ENSG00000182154.8	ENST00000371443.6	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.84557	4.2079699999999995	4.57037	0.0410704	0.0054994	0.163285	0.0402071
chr12	54241554	54241654	13342942	0	-	0.37	(0.36,0.39]	chr12	1049602	102	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	3.39822	4.20789	5.01756	2.36351e-5	2.8655e-8	6.16166e-4	1.91701e-6
chr19	46775061	46775150	17595455	0	-	0.516854	(0.49,0.53]	chr19	1481382	3	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	27	502	2	4.18889	4.207725	4.22656	8.52052e-12	1e-12	1.5082e-9	2.46312e-10
chr1	173487958	173488053	548622	0	+	0.347368	(0.33,0.36]	chr1	58305	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	135	2	3.47304	4.207715	4.94239	2.59729e-8	4.10962e-10	1.76574e-6	5.27915e-8
chr1	171583955	171584032	537543	0	+	0.441558	(0.42,0.455]	chr1	57718	1	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	3.86245	4.207665	4.55288	8.83107e-8	2.12083e-8	5.61099e-6	1.48013e-6
chr19	19645271	19645346	17504332	0	-	0.653333	(0.59,1]	chr19	1469144	2	UTR3	UTR3:EXON_MRNA	ATP13A1	ENSG00000105726.17	ENST00000357324.11:ENST00000467160.1:ENST00000291503.9:ENST00000473243.5:ENST00000497556.5:ENST00000469641.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	24	2	3.87333	4.20758	4.54183	0.0348991	0.0070583	0.141505	0.0478044
chr19	14120079	14120173	17478633	0	-	0.553191	(0.53,0.59]	chr19	1464243	7	UTR3	UTR3:EXON_MRNA	ASF1B	ENSG00000105011.9	ENST00000263382.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.74542	4.20739	4.66936	0.00103174	2.30148e-4	0.0121443	0.00352524
chr12	7150616	7150689	12717391	0	+	0.506849	(0.49,0.53]	chr12	987725	2	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000542663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.99849	4.207045	5.4156	0.00630123	1.84143e-5	0.0445415	4.53637e-4
chr19	11441298	11441357	17231177	0	+	0.525424	(0.49,0.53]	chr19	1419895	2	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000589126.5:ENST00000587509.5:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding	9	207	2	3.79988	4.206894999999999	4.61391	8.90867e-7	3.89389e-12	4.02766e-5	7.55986e-10
chr17	59647576	59647666	16295086	0	+	0.444444	(0.42,0.455]	chr17	1321611	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000585198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	125	2	4.06324	4.206845	4.35045	1.14038e-6	1.08207e-9	4.91686e-5	1.12256e-7
chr1	21847957	21848025	890896	0	-	0.661765	(0.59,1]	chr1	92354	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	130	2	4.06326	4.206735	4.35021	2.10898e-5	4.19122e-6	5.6023e-4	1.3377e-4
chr1	196677475	196677571	640853	0	+	0.427083	(0.42,0.455]	chr1	64443	1	CDS	CDS:EXON_MRNA:INTRON	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	3.501	4.206565	4.91213	1.75074e-4	8.62752e-6	0.00306313	2.43605e-4
chr19	44903069	44903169	17349634	0	+	0.59	(0.53,0.59]	chr19	1439225	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TOMM40	ENSG00000130204.13	ENST00000252487.9:ENST00000405636.6:ENST00000592434.5:ENST00000426677.7:ENST00000592041.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	3.29588	4.206475	5.11707	1.96478e-4	1.35965e-4	0.00335505	0.00231202
chr19	40611151	40611232	17330332	0	+	0.604938	(0.59,1]	chr19	1435994	1	CDS	CDS:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8:ENST00000243562.13:ENST00000546155.5:ENST00000598256.1:ENST00000598055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.78188	4.2064699999999995	4.63106	0.00537945	3.33896e-4	0.0406564	0.00472923
chr1	2308045	2308144	7386	0	+	0.40404	(0.39,0.42]	chr1	1667	14	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.70591	4.206415	5.70692	0.0185716	2.36087e-6	0.0932453	8.27472e-5
chr1	77122274	77122359	1109516	0	-	0.4	(0.39,0.42]	chr1	111532	1	CDS	CDS:UTR3:EXON_MRNA	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.70591	4.206415	5.70692	0.0185716	2.36087e-6	0.0932453	8.27472e-5
chr6	149802279	149802379	7482042	0	+	0.45	(0.42,0.455]	chr6	571805	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.03532	4.206405	6.37749	0.040947	1.88677e-8	0.163285	1.34393e-6
chr2	38365173	38365272	2603407	0	-	0.30303	(0.29,0.33]	chr2	234489	57	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.99453	4.206325	4.41812	0.00162106	8.03892e-5	0.0161179	0.00167226
chr10	100362629	100362729	11219486	0	+	0.54	(0.53,0.59]	chr10	853930	18	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	3.4906	4.20599	4.92138	2.35913e-6	9.75317e-8	8.27472e-5	6.11764e-6
chr10	84150148	84150243	11164599	0	+	0.578947	(0.53,0.59]	chr10	848151	2	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	9	151	2	3.25346	4.205655	5.15785	5.16267e-7	1.40707e-8	2.27506e-5	1.13914e-6
chr19	5220010	5220082	17435074	0	-	0.583333	(0.53,0.59]	chr19	1455692	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5:ENST00000592099.5:ENST00000588012.5:ENST00000262963.10:ENST00000589851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.35511	4.2056000000000004	6.05609	0.0445399	4.62627e-7	0.172163	2.06661e-5
chr5	149507026	149507102	6910368	0	-	0.473684	(0.455,0.49]	chr5	528493	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5:ENST00000503350.6:ENST00000606299.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	4.03349	4.205209999999999	4.37693	4.13044e-5	4.5365e-6	9.71332e-4	1.42727e-4
chrX	121203663	121203759	19198095	0	-	0.46875	(0.455,0.49]	chrX	1632450	6	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	51	2	4.03349	4.205209999999999	4.37693	4.13044e-5	4.5365e-6	9.71332e-4	1.42727e-4
chr1	23692608	23692635	98631	0	+	0.518519	(0.49,0.53]	chr1	11411	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2:ENST00000482370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	402	2	3.52192	4.205195	4.88847	2.79467e-9	1e-12	2.79164e-7	2.25522e-10
chr17	41757414	41757475	16543000	0	-	0.655738	(0.59,1]	chr17	1356268	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.54043	4.2051	4.86977	0.00246014	8.66186e-5	0.0230058	0.00161378
chr9	92068031	92068098	10736002	0	-	0.373134	(0.36,0.39]	chr9	812123	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	3.31072	4.20506	5.0994	4.68763e-5	3.24695e-5	0.00107286	7.18962e-4
chr1	23053760	23053839	97475	0	+	0.405063	(0.39,0.42]	chr1	11223	1	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000481879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.94917	4.20501	5.46085	0.00121791	5.81708e-6	0.0130188	1.921e-4
chrX	73827785	73827884	19113546	0	-	0.363636	(0.36,0.39]	chrX	1626115	62	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2:ENST00000602587.5	lncRNA	lncRNA	lncRNA	lncRNA	10	153	2	3.62596	4.20495	4.78394	6.51349e-8	5.64493e-12	3.86864e-6	1.1392e-9
chr9	125353457	125353557	10461666	0	+	0.42	(0.39,0.42]	chr9	788133	22	INTRON	INTRON	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	130	2	2.9483	4.204945	5.46159	1.18306e-4	2.47058e-12	0.00224891	5.03764e-10
chr9	124353597	124353697	10849510	0	-	0.48	(0.455,0.49]	chr9	821866	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	3.24913	4.20485	5.16057	0.00239443	9.41019e-9	0.0225356	7.37763e-7
chr3	197850861	197850954	4672312	0	-	0.451613	(0.42,0.455]	chr3	386806	6	EXON_PSEUDO	EXON_PSEUDO	AC144530.1	ENSG00000234742.1	ENST00000452862.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	37	2	4.05954	4.204705000000001	4.34987	0.00617886	5.55486e-6	0.0439741	1.68903e-4
chr8	55750963	55751060	9834490	0	-	0.443299	(0.42,0.455]	chr8	744141	1	CDS	CDS:UTR3:EXON_MRNA	TMEM68	ENSG00000167904.15	ENST00000522470.1:ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000517576.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000520061.5:ENST00000524121.1:ENST00000522030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	4.05954	4.204705000000001	4.34987	0.00617886	5.55486e-6	0.0439741	1.68903e-4
chr2	231457000	231457062	3226735	0	-	0.354839	(0.33,0.36]	chr2	283851	1	CDS	CDS:UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000466274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.60198	4.20468	4.80738	6.01238e-4	1.58302e-7	0.00811676	8.30881e-6
chr2	26238933	26239004	2566140	0	-	0.422535	(0.42,0.455]	chr2	230638	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	1.99701	4.204425	6.41184	0.0235036	1.42035e-8	0.111072	1.0503e-6
chrX	119244186	119244279	18840481	0	+	0.333333	(0.33,0.36]	chrX	1605479	11	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.34311	4.204135	6.06516	0.00300559	3.99893e-8	0.0256959	2.81425e-6
chr15	74415892	74415985	15374490	0	-	0.526882	(0.49,0.53]	chr15	1215173	2	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.1249	4.20411	4.28332	0.00338762	2.4461e-5	0.0288632	5.72214e-4
chr2	227552037	227552117	2415356	0	+	0.525	(0.49,0.53]	chr2	217284	2	CDS	CDS:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	4.1249	4.20411	4.28332	0.00338762	2.4461e-5	0.0288632	5.72214e-4
chr9	96364463	96364550	10750707	0	-	0.344828	(0.33,0.36]	chr9	813836	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC35D2	ENSG00000130958.13	ENST00000650065.1:ENST00000253270.13:ENST00000375259.9:ENST00000482643.2:ENST00000375257.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	3.32157	4.20406	5.08655	1.77615e-4	4.6453e-5	0.00287736	0.00106753
chr22	31621727	31621806	18473647	0	-	0.607595	(0.59,1]	chr22	1576738	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PISD:MIR7109	ENSG00000241878.11:ENSG00000284082.1	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000613748.1:ENST00000422020.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	48	2	3.4666	4.20395	4.9413	0.00191468	0.00133574	0.0190905	0.0139317
chr18	59347512	59347571	17142516	0	-	0.440678	(0.42,0.455]	chr18	1407635	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	205	2	3.70693	4.20393	4.70093	1.87156e-6	1.36435e-12	7.50901e-5	2.96942e-10
chr5	28797888	28797988	6511205	0	-	0.35	(0.33,0.36]	chr5	504434	147	INTRON	INTRON	CTD-2134P3.1	ENSG00000250453.2	ENST00000653909.1:ENST00000660682.1:ENST00000670424.1:ENST00000504398.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.57559	4.203785	4.83198	0.0262108	1.88689e-4	0.117079	0.0032588
chr5	181188450	181188549	7008583	0	-	0.515152	(0.49,0.53]	chr5	537231	11	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01962	ENSG00000248473.2	ENST00000658296.1:ENST00000655600.1	lncRNA	lncRNA	lncRNA	lncRNA	26	477	2	3.1309	4.20363	5.27636	3.898e-8	1e-12	2.48891e-6	2.46312e-10
chr10	73030318	73030370	11568466	0	-	0.442308	(0.42,0.455]	chr10	880463	2	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	4.16566	4.203495	4.24133	0.00326918	6.37132e-9	0.0282494	5.23021e-7
chr8	30073876	30073950	9780566	0	-	0.445946	(0.42,0.455]	chr8	739528	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000518340.1:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1:ENST00000517569.1:ENST00000521083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.57051	4.20292	5.83533	0.0265466	1.15767e-6	0.120071	4.52486e-5
chr19	14401652	14401706	17242449	0	+	0.574074	(0.53,0.59]	chr19	1421828	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.00674	4.20287	5.399	8.9408e-4	3.02387e-5	0.01086	6.78876e-4
chr10	67837933	67838011	11555174	0	-	0.371795	(0.36,0.39]	chr10	878826	1	CDS_START	CDS_START:CDS:EXON_MRNA	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6:ENST00000480963.5:ENST00000339758.7:ENST00000480180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.98025	4.20264	4.42503	0.00881716	0.00133228	0.0562439	0.0144372
chr2	32029664	32029736	2590224	0	-	0.361111	(0.36,0.39]	chr2	233148	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.98025	4.20264	4.42503	0.00881716	0.00133228	0.0562439	0.0144372
chr6	96896743	96896795	7854107	0	-	0.384615	(0.36,0.39]	chr6	601405	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFAF4	ENSG00000123545.6	ENST00000316149.8:ENST00000478382.1:ENST00000489477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.98025	4.20264	4.42503	0.00881716	0.00133228	0.0562439	0.0144372
chr10	96533120	96533190	11640215	0	-	0.385714	(0.36,0.39]	chr10	886587	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	3.99	4.20244	4.41488	6.1616e-5	6.32047e-8	0.00133408	3.77198e-6
chr11	31827318	31827417	11894924	0	+	0.636364	(0.59,1]	chr11	908700	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PAUPAR:RP1-65P5.6	ENSG00000281880.2:ENSG00000285283.1	ENST00000643436.1:ENST00000646959.1:ENST00000530348.5:ENST00000645942.1:ENST00000642237.1:ENST00000644607.1:ENST00000646221.1:ENST00000532942.5:ENST00000643671.1:ENST00000643931.1:ENST00000642614.1:ENST00000642818.1:ENST00000506388.2:ENST00000645848.1:ENST00000645824.1:ENST00000647350.1:ENST00000643826.1:ENST00000630360.1:ENST00000642549.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	131	2	2.9891200000000002	4.20239	5.41566	0.00823979	1.88976e-8	0.0540283	1.34479e-6
chr6	31859818	31859881	7662779	0	-	0.619048	(0.59,1]	chr6	585390	1	CDS	CDS:UTR3:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.61023	4.202365	4.7945	0.0031766	7.25496e-4	0.0279054	0.00869086
chr15	72200473	72200564	15368001	0	-	0.604396	(0.59,1]	chr15	1214129	1	CDS	CDS:UTR3:EXON_MRNA	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000565143.1:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	204	2	4.09862	4.202285	4.30595	1.12003e-6	4.65668e-7	4.85967e-5	2.07886e-5
chr1	224997394	224997494	733080	0	+	0.34	(0.33,0.36]	chr1	73850	229	INTRON	INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000400952.7:ENST00000682510.1:ENST00000366849.5:ENST00000439375.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.82538	4.202035	4.57869	1.40963e-4	1.14009e-6	0.002378	4.91686e-5
chr1	222629709	222629806	723962	0	+	0.371134	(0.36,0.39]	chr1	72962	23	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr10	7335552	7335652	11360963	0	-	0.37	(0.36,0.39]	chr10	866306	404	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr11	32979970	32980070	11899540	0	+	0.37	(0.36,0.39]	chr11	909057	36	UTR3	UTR3:EXON_MRNA:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr17	77216832	77216922	16362238	0	+	0.388889	(0.36,0.39]	chr17	1329015	4	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr3	185626297	185626393	3956254	0	+	0.364583	(0.36,0.39]	chr3	333416	1	CDS	CDS:UTR3:EXON_MRNA	SENP2	ENSG00000163904.13	ENST00000296257.10:ENST00000413407.5:ENST00000444509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr4	102635864	102635935	5562603	0	-	0.380282	(0.36,0.39]	chr4	444196	1	CDS	CDS:UTR3:EXON_MRNA	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1:ENST00000508141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr6	149590738	149590838	7481373	0	+	0.37	(0.36,0.39]	chr6	571720	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GINM1	ENSG00000055211.14	ENST00000650599.1:ENST00000367419.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr7	48903318	48903413	8810780	0	-	0.368421	(0.36,0.39]	chr7	672545	9	EXON_PSEUDO	EXON_PSEUDO	GDI2P1	ENSG00000229165.1	ENST00000429312.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	4.16143	4.2016849999999994	4.24194	0.00486719	0.00276729	0.0366328	0.0247437
chr6	28156689	28156787	7105818	0	+	0.346939	(0.33,0.36]	chr6	543601	28	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	4.10837	4.20138	4.29439	2.58508e-5	9.429e-6	5.98505e-4	2.89287e-4
chr21	45491224	45491314	18145718	0	+	0.733333	(0.59,1]	chr21	1539775	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	5	106	2	2.89218	4.20135	5.51052	0.00019737500000000001	1.10472e-4	0.00336487	0.00196631
chr9	111932826	111932897	10420376	0	+	0.43662	(0.42,0.455]	chr9	784483	1	CDS	CDS:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.38704	4.2013300000000005	5.01562	1.01971e-4	1.91222e-5	0.0019861	4.67807e-4
chr1	160297342	160297438	1328754	0	-	0.510417	(0.49,0.53]	chr1	136015	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000545284.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	4.12263	4.2011199999999995	4.27961	0.00591451	9.03426e-6	0.0427941	2.53429e-4
chr20	2462698	2462761	17878940	0	-	0.634921	(0.59,1]	chr20	1512821	2	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.75686	4.201005	5.64515	0.00108088	1.07144e-4	0.0118355	0.00206452
chr7	135929925	135930012	9085580	0	-	0.517241	(0.49,0.53]	chr7	693647	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	4.04275	4.2006499999999996	4.35855	5.06834e-6	1.27151e-7	1.7169e-4	6.87017e-6
chr11	78101141	78101195	12477712	0	-	0.388889	(0.36,0.39]	chr11	970683	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000531213.5:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.76749	4.200515	5.63354	0.00287858	1.45096e-6	0.0247002	6.01084e-5
chr6	26197150	26197250	7647202	0	-	0.64	(0.59,1]	chr6	582543	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.72625	4.20031	5.67437	0.00394493	6.83706e-5	0.0322851	0.00132577
chr6	28155006	28155105	7105801	0	+	0.484848	(0.455,0.49]	chr6	543601	11	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.55358	4.2002950000000006	5.84701	4.7042e-4	5.98588e-7	0.00621718	2.85128e-5
chr1	165651977	165652035	515866	0	+	0.448276	(0.42,0.455]	chr1	55476	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000477450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.90616	4.20022	5.49428	0.00162359	1.07978e-5	0.0169915	2.9314e-4
chr2	43888599	43888656	2622916	0	-	0.350877	(0.33,0.36]	chr2	236085	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.56818	4.20008	4.83198	1.88689e-4	3.90735e-5	0.0032588	8.43777e-4
chrX	108084877	108084973	19163719	0	-	0.354167	(0.33,0.36]	chrX	1629964	8	UTR3	UTR3:EXON_MRNA	PSMD10	ENSG00000101843.19	ENST00000217958.8:ENST00000372296.5:ENST00000372295.5:ENST00000361815.9:ENST00000340200.5	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	3.72365	4.19991	4.67617	3.19155e-4	2.60239e-10	0.00491578	3.17236e-8
chr1	156036878	156036977	1313211	0	-	0.585859	(0.53,0.59]	chr1	133124	17	UTR3	UTR3:EXON_MRNA	UBQLN4	ENSG00000160803.8	ENST00000368309.4	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.37842	4.199675	6.02093	7.03525e-4	5.66478e-7	0.00848325	2.7364e-5
chr17	81932879	81932963	16710118	0	-	0.619048	(0.59,1]	chr17	1377896	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.11647	4.199655	5.28284	0.00535979	4.04404e-4	0.0406564	0.00550292
chr7	75422804	75422903	8858981	0	-	0.616162	(0.59,1]	chr7	676969	14	CDS	CDS:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.11647	4.199655	5.28284	0.00535979	4.04404e-4	0.0406564	0.00550292
chr5	10258385	10258460	5874600	0	+	0.4	(0.39,0.42]	chr5	461870	1	CDS	CDS:UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1:ENST00000514674.5:ENST00000509846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.91508	4.19953	5.48398	4.41174e-4	4.53356e-10	0.0062930699999999996	5.19925e-8
chrX	135032625	135032725	18865051	0	+	0.56	(0.53,0.59]	chrX	1607587	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.47	4.19942	5.92884	0.0089333	1.11987e-6	0.0567495	4.4003e-5
chr19	18435838	18435921	17499325	0	-	0.542169	(0.53,0.59]	chr19	1468105	2	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2:ENST00000583309.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.65894	4.199255	5.73957	0.0193255	3.90343e-6	0.0943643	1.26306e-4
chr20	44466563	44466656	17981952	0	-	0.537634	(0.53,0.59]	chr20	1523359	1	EXON_PSEUDO	EXON_PSEUDO	RPL37AP1	ENSG00000226243.1	ENST00000412502.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	2.65894	4.199255	5.73957	0.0193255	3.90343e-6	0.0943643	1.26306e-4
chr16	70252443	70252535	15996865	0	-	0.543478	(0.53,0.59]	chr16	1284590	6	UTR3	UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	95	2	3.83102	4.19911	4.5672	1.40998e-6	8.16599e-7	5.86085e-5	3.36299e-5
chr3	197043246	197043344	4667416	0	-	0.418367	(0.39,0.42]	chr3	386231	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.5823	4.199104999999999	5.81591	0.00246531	1.11558e-6	0.0230262	4.4003e-5
chr2	127993247	127993308	2870081	0	-	0.47541	(0.455,0.49]	chr2	256622	2	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.32637	4.199045	5.07172	1.64563e-4	8.3067e-5	0.00269001	0.00171126
chr9	113256148	113256248	10425072	0	+	0.5	(0.49,0.53]	chr9	784720	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.15207	4.198930000000001	5.24579	0.00347189	4.073e-5	0.0286293	9.64741e-4
chr15	52547343	52547443	15287461	0	-	0.37	(0.36,0.39]	chr15	1206631	4	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	4.15583	4.198885	4.24194	0.00276729	1.9188e-5	0.0247437	4.68725e-4
chr3	133816877	133816932	3752476	0	+	0.363636	(0.36,0.39]	chr3	321400	1	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	4.15583	4.198885	4.24194	0.00276729	1.9188e-5	0.0247437	4.68725e-4
chr5	139481212	139481277	6867266	0	-	0.553846	(0.53,0.59]	chr5	525711	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000651565.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000515507.5:ENST00000511850.1:ENST00000503838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	3.44509	4.19871	4.95233	3.02711e-4	8.31409e-5	0.00439897	0.00171126
chr1	161209217	161209313	499136	0	+	0.520833	(0.49,0.53]	chr1	54014	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000496133.5:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000473321.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.60653	4.198695	4.79086	4.50981e-4	4.20783e-4	0.00611538	0.00605268
chr15	48878549	48878640	14921709	0	+	0.516484	(0.49,0.53]	chr15	1173115	4	CDS	CDS:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3:ENST00000560490.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.60653	4.198695	4.79086	4.50981e-4	4.20783e-4	0.00611538	0.00605268
chr17	35671826	35671900	16206974	0	+	0.527027	(0.49,0.53]	chr17	1309113	2	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.60653	4.198695	4.79086	4.50981e-4	4.20783e-4	0.00611538	0.00605268
chr1	121168441	121168540	1259556	0	-	0.464646	(0.455,0.49]	chr1	123392	9	UTR3	UTR3:EXON_MRNA	FAM72B	ENSG00000188610.12	ENST00000369390.7:ENST00000355228.8:ENST00000619376.4	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.76399	4.1986550000000005	5.63332	8.75629e-4	4.15159e-6	0.0106963	1.32627e-4
chrX	47657206	47657290	19061132	0	-	0.47619	(0.455,0.49]	chrX	1620035	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000485641.5:ENST00000460840.5:ENST00000376964.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.76399	4.1986550000000005	5.63332	8.75629e-4	4.15159e-6	0.0106963	1.32627e-4
chr1	77948111	77948205	1112661	0	-	0.308511	(0.29,0.33]	chr1	111852	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000489495.5:ENST00000294623.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.44697	4.19851	4.95005	0.00101442	9.78718e-5	0.0112862	0.0019344
chr2	61203201	61203263	2687536	0	-	0.370968	(0.36,0.39]	chr2	239927	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1:ENST00000463046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.53094	4.198485	4.86603	0.0305588	1.68962e-4	0.130016	0.00297945
chr17	48863147	48863247	16255730	0	+	0.48	(0.455,0.49]	chr17	1317495	2	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000507306.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.24913	4.198435	5.14774	0.00239443	7.45457e-5	0.0225356	0.00142165
chr19	12730960	12731060	17470525	0	-	0.49	(0.455,0.49]	chr19	1463054	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TRIR	ENSG00000123144.11	ENST00000242784.5:ENST00000592273.5:ENST00000591254.1:ENST00000588213.1:ENST00000589590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.24913	4.198435	5.14774	0.00239443	7.45457e-5	0.0225356	0.00142165
chr4	78911933	78912033	4912703	0	+	0.47	(0.455,0.49]	chr4	404413	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.24913	4.198435	5.14774	0.00239443	7.45457e-5	0.0225356	0.00142165
chr4	22594195	22594280	4753592	0	+	0.529412	(0.49,0.53]	chr4	393436	1	EXON_PSEUDO	EXON_PSEUDO	RP11-10G12.1	ENSG00000244538.1	ENST00000480875.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	49	2	3.14975	4.19777	5.24579	8.97896e-5	4.073e-5	0.0016645	9.64741e-4
chr19	44865562	44865660	17349248	0	+	0.622449	(0.59,1]	chr19	1439131	4	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.11647	4.1977400000000005	5.27901	0.00535979	4.97005e-8	0.0406564	3.06743e-6
chr17	42841677	42841776	16230328	0	+	0.373737	(0.36,0.39]	chr17	1313600	2	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000543428.5:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	3.27479	4.197665	5.12054	7.15553e-5	5.51752e-5	0.00137393	0.00122694
chr19	34396580	34396657	17300527	0	+	0.571429	(0.53,0.59]	chr19	1429884	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1:ENST00000592740.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	148	2	3.22744	4.197165	5.16689	1.57108e-5	1.05183e-10	4.3971e-4	1.41904e-8
chr12	62965784	62965876	12916269	0	+	0.532609	(0.53,0.59]	chr12	1006753	6	EXON_PSEUDO	EXON_PSEUDO	RPL14P1	ENSG00000139239.7	ENST00000484568.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	4.08599	4.196875	4.30776	0.00407289	3.38473e-5	0.0324137	7.45971e-4
chr12	8460617	8460704	12721974	0	+	0.494253	(0.49,0.53]	chr12	988403	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	CLEC6A:RP11-113C12.2	ENSG00000205846.4:ENSG00000243830.2	ENST00000382073.4:ENST00000477936.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	31	2	3.11892	4.196845	5.27477	0.00398244	4.14521e-5	0.0322851	8.8376e-4
chr7	44655120	44655220	8260792	0	+	0.47	(0.455,0.49]	chr7	629251	70	INTRON	INTRON	OGDH	ENSG00000105953.15	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000631326.2:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	4	85	2	3.99499	4.196675	4.39836	1.91791e-6	7.82907e-8	7.6073e-5	4.52822e-6
chr16	56682469	56682540	15679332	0	+	0.535211	(0.53,0.59]	chr16	1246540	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RP11-343H19.2:MT1X	ENSG00000259827.1:ENSG00000187193.9	ENST00000567563.1:ENST00000394485.5:ENST00000568370.1:ENST00000562939.1:ENST00000564974.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	47	2	3.52495	4.19659	4.86823	4.35895e-4	5.15316e-5	0.00623608	0.00105223
chr2	219213240	219213326	3191187	0	-	0.55814	(0.53,0.59]	chr2	280806	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000492543.1:ENST00000448398.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.52495	4.19659	4.86823	4.35895e-4	5.15316e-5	0.00623608	0.00105223
chr3	47586150	47586248	4161742	0	-	0.306122	(0.29,0.33]	chr3	348302	10	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.48886	4.196339999999999	5.90382	0.0055888	3.10438e-7	0.0419759	1.47195e-5
chr17	14705350	14705442	16454129	0	-	0.521739	(0.49,0.53]	chr17	1343038	4	EXON_PSEUDO	EXON_PSEUDO	RPS18P12	ENSG00000230897.1	ENST00000412454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	39	2	2.38097	4.196295	6.01162	0.0425419	3.55916e-7	0.167547	1.64926e-5
chr19	14402684	14402773	17242462	0	+	0.516854	(0.49,0.53]	chr19	1421834	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.35841	4.19611	5.03381	1.49689e-4	1.37225e-4	0.00253405	0.0024973
chr16	71928908	71929008	15733934	0	+	0.38	(0.36,0.39]	chr16	1253455	12	UTR3	UTR3:EXON_MRNA	IST1	ENSG00000182149.21	ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000329908.12:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.88918	4.196065	5.50295	0.00212816	7.4907e-6	0.0206577	2.17853e-4
chr13	39014277	39014376	13976241	0	-	0.525253	(0.49,0.53]	chr13	1096566	17	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000602512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	3.97278	4.196045	4.41931	3.4941e-6	2.29577e-6	1.14163e-4	8.86852e-5
chr16	85675807	85675906	15798111	0	+	0.393939	(0.39,0.42]	chr16	1257094	34	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	82	2	3.8315	4.196015	4.56053	7.07508e-6	1.86006e-8	2.27834e-4	1.33007e-6
chr8	38969872	38969961	9295231	0	+	0.550562	(0.53,0.59]	chr8	711113	2	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000617275.5:ENST00000616834.1:ENST00000518939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	3.11779	4.195995	5.2742000000000004	5.11883e-4	5.19943e-9	0.00664583	4.78845e-7
chr17	59185439	59185500	16292751	0	+	0.393443	(0.39,0.42]	chr17	1321339	1	CDS	CDS:EXON_MRNA	PRR11	ENSG00000068489.13	ENST00000578777.5:ENST00000262293.9:ENST00000578542.5:ENST00000582995.5:ENST00000581182.1:ENST00000580177.5:ENST00000614081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.89848	4.19586	4.49324	0.00108192	9.30194e-5	0.0124943	0.00169783
chr4	143871557	143871656	5695925	0	-	0.414141	(0.39,0.42]	chr4	451429	8	UTR3	UTR3:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.89848	4.19586	4.49324	0.00108192	9.30194e-5	0.0124943	0.00169783
chr17	78171738	78171809	16367716	0	+	0.591549	(0.59,1]	chr17	1329563	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	139	2	3.15632	4.1958400000000005	5.23536	6.43048e-4	6.73524e-8	0.00850474	3.99016e-6
chr1	28096032	28096130	912445	0	-	0.418367	(0.39,0.42]	chr1	95414	4	EXON_PSEUDO	EXON_PSEUDO	SPCS2P4	ENSG00000228589.3	ENST00000436160.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	36	2	2.74243	4.195805	5.64918	0.00369167	3.47137e-6	0.030936	1.13687e-4
chr3	170129262	170129358	4573910	0	-	0.489583	(0.455,0.49]	chr3	378573	7	CDS	CDS:EXON_MRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.53963	4.195589999999999	5.85155	0.00112063	9.4476e-7	0.0128408	3.80876e-5
chr2	112621897	112621987	2849007	0	-	0.388889	(0.36,0.39]	chr2	254213	2	EXON_PSEUDO	EXON_PSEUDO	AC079922.2	ENSG00000231747.1	ENST00000443291.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	54	2	2.91432	4.195405	5.47649	4.97991e-5	4.3709e-6	0.00102381	1.52262e-4
chr1	54241473	54241509	1028277	0	-	0.472222	(0.455,0.49]	chr1	106788	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000444533.5:ENST00000420121.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	3.0141	4.195095	5.37609	9.3076e-4	2.05373e-5	0.0111917	4.97369e-4
chr6	27831173	27831215	7649613	0	-	0.52381	(0.49,0.53]	chr6	582809	1	UTR3	UTR3:EXON_MRNA	H4C12	ENSG00000273542.2	ENST00000611927.2	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.46958	4.19479	5.92	0.00344146	6.89283e-7	0.0292838	2.91313e-5
chr19	12643366	12643459	17469624	0	-	0.483871	(0.455,0.49]	chr19	1462695	2	EXON_PSEUDO	EXON_PSEUDO	RPL10P16	ENSG00000178464.6	ENST00000325000.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	363	2	3.75337	4.19469	4.63601	1.53992e-9	1e-12	1.66656e-7	2.25522e-10
chr15	65887781	65887840	14982326	0	+	0.440678	(0.42,0.455]	chr15	1177743	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	3.98629	4.194525	4.40276	0.0017618	2.11853e-6	0.0180053	7.50523e-5
chr15	42228711	42228765	15239018	0	-	0.425926	(0.42,0.455]	chr15	1200201	1	CDS	CDS:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000564329.1:ENST00000566014.1:ENST00000562946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.37329	4.194455	5.01562	0.00136107	1.01971e-4	0.0141115	0.0019861
chr1	179341215	179341310	576382	0	+	0.431579	(0.42,0.455]	chr1	59803	3	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8:ENST00000426956.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	4.14705	4.19419	4.24133	0.00326918	2.1071e-5	0.0282494	5.06044e-4
chr11	46677176	46677274	12383216	0	-	0.55102	(0.53,0.59]	chr11	955923	2	UTR3	UTR3:EXON_MRNA	ARHGAP1	ENSG00000175220.12	ENST00000311956.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.1234	4.194155	5.26491	0.00390623	6.31437e-5	0.0322851	0.00124286
chr2	27213251	27213298	1691425	0	+	0.574468	(0.53,0.59]	chr2	165614	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000484646.1:ENST00000405489.7:ENST00000419744.1:ENST00000491220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.1234	4.194155	5.26491	0.00390623	6.31437e-5	0.0322851	0.00124286
chr17	44013057	44013155	16555933	0	-	0.632653	(0.59,1]	chr17	1358820	1	CDS	CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8:ENST00000587529.1:ENST00000585950.5:ENST00000592127.5:ENST00000590905.1	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	4.06326	4.1936599999999995	4.32406	2.43308e-5	4.19122e-6	6.29277e-4	1.3377e-4
chr21	34993448	34993548	18228806	0	-	0.45	(0.42,0.455]	chr21	1546951	1001	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.52659	4.193485	4.86038	6.87022e-4	3.34791e-4	0.00876781	0.00472923
chr11	125602363	125602424	12194338	0	+	0.491803	(0.49,0.53]	chr11	940722	2	CDS	CDS:UTR5:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	77	2	3.16986	4.193455	5.21705	3.95698e-4	6.26966e-9	0.00587341	5.16133e-7
chr6	125263347	125263443	7383898	0	+	0.395833	(0.39,0.42]	chr6	566005	5	UTR3	UTR3:EXON_MRNA	TPD52L1	ENSG00000111907.21	ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000392482.6:ENST00000571678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	3.85207	4.193415	4.53476	1.28587e-4	2.33863e-8	0.00241206	1.61246e-6
chr5	131642208	131642307	6829685	0	-	0.383838	(0.36,0.39]	chr5	522306	6	UTR3	UTR3:EXON_MRNA:INTRON	CTC-432M15.3:FNIP1	ENSG00000273217.1:ENSG00000217128.12	ENST00000514667.1:ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000615660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.18348	4.193395	5.20331	0.00310315	2.53222e-5	0.0263402	6.51851e-4
chr8	144085042	144085138	9650266	0	+	0.65625	(0.59,1]	chr8	731495	1	CDS	CDS:EXON_MRNA	GPAA1	ENSG00000197858.11	ENST00000355091.9:ENST00000361036.10:ENST00000527653.1:ENST00000529638.1:ENST00000531593.1:ENST00000530796.1:ENST00000534072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	141	2	3.8973	4.193355	4.48941	2.15122e-4	2.59295e-7	0.00360503	1.26346e-5
chr6	52404081	52404178	7177651	0	+	0.618557	(0.59,1]	chr6	555098	9	CDS	CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.24972	4.193255000000001	5.13679	0.00314037	9.28022e-4	0.0264943	0.0111748
chr17	17383830	17383921	16464547	0	-	0.747253	(0.59,1]	chr17	1344546	6	EXON_PSEUDO	EXON_PSEUDO	RPL13P12	ENSG00000215030.5	ENST00000392730.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	47	2	3.19	4.19324	5.19648	0.0039188	7.35336e-4	0.0314356	0.00921643
chr6	30690144	30690243	7658962	0	-	0.646465	(0.59,1]	chr6	584190	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.19	4.19324	5.19648	0.0039188	7.35336e-4	0.0314356	0.00921643
chr12	57695961	57696038	12904084	0	+	0.467532	(0.455,0.49]	chr12	1005864	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000550848.5:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000551285.5:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000550793.1:ENST00000552423.1:ENST00000549307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	103	2	3.59751	4.193115	4.78872	4.2755e-6	2.38616e-9	1.49387e-4	2.24337e-7
chr7	140453427	140453526	9107984	0	-	0.424242	(0.42,0.455]	chr7	695057	5	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	64	2	3.83225	4.193105	4.55396	6.45764e-6	1.1523e-6	1.92232e-4	4.9483e-5
chr12	49272640	49272738	12865714	0	+	0.571429	(0.53,0.59]	chr12	999063	5	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	631	2	4.04207	4.19306	4.34405	4.65994e-12	2.53986e-12	8.84531e-10	5.61978e-10
chr13	39014178	39014277	13976240	0	-	0.494949	(0.49,0.53]	chr13	1096566	16	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	89	2	4.16626	4.193015	4.21977	5.42608e-7	3.36571e-7	2.37553e-5	1.7708e-5
chr17	51288118	51288203	16266948	0	+	0.376471	(0.36,0.39]	chr17	1319694	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12:ENST00000508506.3:ENST00000583205.5:ENST00000579261.6:ENST00000582832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.02397	4.19294	5.36191	0.00674398	1.79406e-5	0.0461258	4.45904e-4
chr2	176329826	176329926	2225087	0	+	0.39	(0.36,0.39]	chr2	203300	4	SS5_PROX	SS5_PROX:INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.02397	4.19294	5.36191	0.00674398	1.79406e-5	0.0461258	4.45904e-4
chr1	50326714	50326812	187869	0	+	0.602041	(0.59,1]	chr1	24236	7	EXON_PSEUDO	EXON_PSEUDO	RP11-183G22.1	ENSG00000234080.3	ENST00000423464.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	48	2	3.51608	4.192925	4.86977	0.00246014	0.00108676	0.0230058	0.0118659
chr17	44854618	44854682	16559947	0	-	0.546875	(0.53,0.59]	chr17	1359708	2	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.61294	4.1925799999999995	4.77222	0.0310038	6.67251e-4	0.130016	0.00867533
chr20	2145174	2145274	17649429	0	+	0.59	(0.53,0.59]	chr20	1491865	15	UTR3	UTR3:EXON_MRNA:INTRON	STK35	ENSG00000125834.13	ENST00000381482.8:ENST00000493263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.61294	4.1925799999999995	4.77222	0.0310038	6.67251e-4	0.130016	0.00867533
chr8	29063281	29063381	9250791	0	+	0.55	(0.53,0.59]	chr8	708717	67	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	20	2	3.61294	4.1925799999999995	4.77222	0.0310038	6.67251e-4	0.130016	0.00867533
chrX	66266572	66266672	18718308	0	+	0.47	(0.455,0.49]	chrX	1597077	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.13787	4.192555	5.24724	4.66183e-4	3.09759e-5	0.00616585	7.62166e-4
chr3	98579635	98579730	4319533	0	-	0.305263	(0.29,0.33]	chr3	360252	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	3.6089	4.19247	4.77604	5.55178e-5	2.05933e-9	0.00123377	1.9858e-7
chr1	229549233	229549300	1542857	0	-	0.537313	(0.53,0.59]	chr1	154580	1	CDS	CDS:EXON_MRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr11	67401067	67401118	12427621	0	-	0.588235	(0.53,0.59]	chr11	965299	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8:ENST00000529724.1:ENST00000546202.5:ENST00000542876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr11	126265353	126265440	12645162	0	-	0.574713	(0.53,0.59]	chr11	981838	2	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000531104.1:ENST00000527817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr15	57251349	57251423	14949774	0	+	0.554054	(0.53,0.59]	chr15	1174902	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000560506.5:ENST00000559703.1:ENST00000561420.5:ENST00000558210.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr16	30118348	30118443	15913081	0	-	0.578947	(0.53,0.59]	chr16	1275027	1	CDS	CDS:UTR5:EXON_MRNA	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000395200.5:ENST00000395202.5:ENST00000478356.5:ENST00000395199.7:ENST00000483869.1:ENST00000481230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr16	67947728	67947788	15991166	0	-	0.583333	(0.53,0.59]	chr16	1283573	2	CDS	CDS:EXON_MRNA	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000576616.5:ENST00000570802.5:ENST00000537830.6:ENST00000573023.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr17	81272571	81272627	16707087	0	-	0.553571	(0.53,0.59]	chr17	1377193	2	CDS	CDS:EXON_MRNA:INTRON	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9:ENST00000546352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr19	5245775	5245865	17435348	0	-	0.566667	(0.53,0.59]	chr19	1455758	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5:ENST00000592099.5:ENST00000588012.5:ENST00000262963.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr22	43172402	43172478	18527914	0	-	0.578947	(0.53,0.59]	chr22	1582358	1	CDS	CDS:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr9	37635587	37635687	10646335	0	-	0.59	(0.53,0.59]	chr9	805798	431	INTRON	INTRON	RP11-613M10.9	ENSG00000255872.3	ENST00000540557.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chrX	135051766	135051866	19246096	0	-	0.59	(0.53,0.59]	chrX	1634622	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8A	ENSG00000203950.7	ENST00000370775.3:ENST00000518153.1:ENST00000520964.1:ENST00000522309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.61856	4.192445	4.76633	0.0303021	6.98999e-4	0.129773	0.00846751
chr1	112929149	112929208	1232473	0	-	0.355932	(0.33,0.36]	chr1	120475	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	4.17122	4.1924150000000004	4.21361	1.72402e-5	1.64389e-5	4.56784e-4	4.33531e-4
chr16	46660372	46660471	15927117	0	-	0.414141	(0.39,0.42]	chr16	1277396	44	UTR3	UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	3.08949	4.192255	5.29502	1.31388e-4	1.68146e-5	0.00226623	4.64895e-4
chr7	150373244	150373344	8614891	0	+	0.44	(0.42,0.455]	chr7	657739	4	UTR3	UTR3:EXON_MRNA:INTRON	REPIN1:ZNF775	ENSG00000214022.12:ENSG00000196456.13	ENST00000479668.5:ENST00000478789.5:ENST00000397281.6:ENST00000444957.3:ENST00000489432.7:ENST00000425389.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.70451	4.1921599999999994	4.67981	5.38444e-4	2.72131e-4	0.00744072	0.00404713
chr1	235110896	235110993	1560081	0	-	0.391753	(0.39,0.42]	chr1	156012	17	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	3.90133	4.191985	4.48264	1.99404e-6	1.64074e-8	7.88826e-5	1.18809e-6
chr10	73375895	73375994	11571401	0	-	0.353535	(0.33,0.36]	chr10	880849	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000463788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	89	2	3.87091	4.1918	4.51269	1.90304e-6	1.95045e-8	7.59317e-5	1.37715e-6
chr11	34133025	34133083	11905819	0	+	0.534483	(0.53,0.59]	chr11	909683	1	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.61133	4.191775	4.77222	6.67251e-4	4.55298e-4	0.00867533	0.00608573
chr12	57515242	57515336	12903028	0	+	0.56383	(0.53,0.59]	chr12	1005418	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000548944.1:ENST00000552914.5:ENST00000551805.1:ENST00000547665.5:ENST00000552499.5:ENST00000551172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.61133	4.191775	4.77222	6.67251e-4	4.55298e-4	0.00867533	0.00608573
chr16	85804936	85804977	15798353	0	+	0.439024	(0.42,0.455]	chr16	1257146	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	64	2	3.7355	4.19173	4.64796	1.29688e-5	6.51077e-7	3.73168e-4	2.77961e-5
chr5	177883925	177884012	6409318	0	+	0.390805	(0.39,0.42]	chr5	498447	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-423H2.1	ENSG00000170089.15	ENST00000506672.5:ENST00000507037.5:ENST00000358442.4:ENST00000514635.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	58	2	2.19869	4.191675	6.18466	0.0019135	2.37277e-8	0.018324	1.77828e-6
chr16	20777510	20777580	15582804	0	+	0.5	(0.49,0.53]	chr16	1234750	3	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	3.79815	4.1913350000000005	4.58452	9.98532e-7	1.75769e-7	4.42534e-5	9.09965e-6
chr10	12217413	12217467	10926859	0	+	0.444444	(0.42,0.455]	chr10	831977	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC123	ENSG00000151465.14	ENST00000429258.6:ENST00000455773.7:ENST00000281141.9:ENST00000378900.6:ENST00000442050.5:ENST00000498747.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.70273	4.191269999999999	4.67981	0.0215502	5.38444e-4	0.102904	0.00744072
chr14	69454811	69454897	14373416	0	+	0.453488	(0.42,0.455]	chr14	1123167	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC39A9	ENSG00000029364.12	ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1:ENST00000554023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.70273	4.191269999999999	4.67981	0.0215502	5.38444e-4	0.102904	0.00744072
chr16	20691674	20691774	15581923	0	+	0.45	(0.42,0.455]	chr16	1234655	96	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.70273	4.191269999999999	4.67981	0.0215502	5.38444e-4	0.102904	0.00744072
chr8	47887625	47887705	9816670	0	-	0.45	(0.42,0.455]	chr8	742745	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.62315	4.19107	4.75899	4.234e-4	2.77134e-7	0.00613535	1.3349e-5
chr10	95610196	95610292	11632904	0	-	0.520833	(0.49,0.53]	chr10	885990	1	CDS	CDS:EXON_MRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	4.1249	4.19106	4.25722	2.4461e-5	1.00699e-5	5.72214e-4	3.03291e-4
chr17	55776198	55776296	16274523	0	+	0.510204	(0.49,0.53]	chr17	1320159	2	UTR3	UTR3:EXON_MRNA:INTRON	PCTP	ENSG00000141179.14	ENST00000268896.10:ENST00000576183.5:ENST00000573500.5:ENST00000417982.6:ENST00000325214.10:ENST00000571489.5:ENST00000576221.1:ENST00000572536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	4.1249	4.19106	4.25722	2.4461e-5	1.00699e-5	5.72214e-4	3.03291e-4
chrX	119240308	119240386	18840440	0	+	0.551282	(0.53,0.59]	chrX	1605471	1	CDS	CDS:EXON_MRNA:INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	4.00995	4.19103	4.37211	5.43864e-6	1.99748e-6	1.81467e-4	7.14901e-5
chr2	200092272	200092372	2304430	0	+	0.43	(0.42,0.455]	chr2	208196	48	INTRON	INTRON	RP3-417E16.1	ENSG00000287027.1	ENST00000665393.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.99666	4.1908	5.38494	0.00104775	1.30563e-9	0.0123035	1.32956e-7
chr6	149796414	149796500	7481983	0	+	0.55814	(0.53,0.59]	chr6	571798	1	CDS	CDS:UTR3:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	352	2	3.36196	4.190685	5.01941	8.26241e-7	1e-12	3.77388e-5	2.25522e-10
chr20	25865345	25865445	17936218	0	-	0.48	(0.455,0.49]	chr20	1518561	4	SS5_PROX	SS5_PROX:INTRON	FAM182B	ENSG00000175170.16	ENST00000478164.1:ENST00000662978.1:ENST00000657325.1:ENST00000485279.2:ENST00000582267.5:ENST00000661999.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	3.719	4.19055	4.6621	7.84472e-4	1.42274e-5	0.00927662	4.02509e-4
chr12	49129520	49129620	13323987	0	-	0.57	(0.53,0.59]	chr12	1045752	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000549870.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	474	2	4.13164	4.190525	4.24941	2.21366e-11	1.05115e-11	3.89532e-9	1.81908e-9
chr11	78103975	78104052	12477744	0	-	0.298701	(0.29,0.33]	chr11	970695	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000531213.5:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.92065	4.190405	5.46016	0.0117842	7.10374e-6	0.0686664	2.0881e-4
chr17	82640272	82640372	16384976	0	+	0.37	(0.36,0.39]	chr17	1332765	358	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000574694.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	31	2	2.63115	4.19027	5.74939	0.0245975	1.44783e-6	0.114841	5.46137e-5
chr1	109236390	109236469	398100	0	+	0.544304	(0.53,0.59]	chr1	38591	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000369923.4:ENST00000468588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.73974	4.1902349999999995	5.64073	9.00802e-4	7.00135e-6	0.0102618	2.25852e-4
chr1	180196647	180196743	582910	0	+	0.614583	(0.59,1]	chr1	60580	5	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5:ENST00000443059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr11	64220513	64220591	11979490	0	+	0.74359	(0.59,1]	chr11	918797	2	CDS	CDS:EXON_MRNA	FERMT3	ENSG00000149781.13	ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000545896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr12	6601288	6601368	13187427	0	-	0.625	(0.59,1]	chr12	1032406	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000545942.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr12	120211720	120211819	13579797	0	-	0.606061	(0.59,1]	chr12	1068824	14	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr14	105146610	105146667	14800023	0	-	0.719298	(0.59,1]	chr14	1160124	1	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr17	74440251	74440345	16350207	0	+	0.617021	(0.59,1]	chr17	1326483	5	CDS	CDS:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	GPRC5C	ENSG00000170412.18	ENST00000342648.9:ENST00000481232.2:ENST00000652232.1:ENST00000392627.7:ENST00000392628.7:ENST00000652294.1:ENST00000392629.3:ENST00000581590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr19	48326829	48326844	17365219	0	+	0.666667	(0.59,1]	chr19	1441686	1	UTR5	UTR5:EXON_MRNA:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr22	42065737	42065818	18520767	0	-	0.592593	(0.59,1]	chr22	1581515	1	CDS	CDS:EXON_MRNA	NAGA	ENSG00000198951.12	ENST00000396398.8:ENST00000403363.5:ENST00000402937.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr9	137107361	137107447	10514735	0	+	0.651163	(0.59,1]	chr9	797002	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2:ENST00000683529.1:ENST00000550113.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chrX	154349361	154349429	19277955	0	-	0.602941	(0.59,1]	chrX	1638241	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000498491.5:ENST00000462590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	4.11672	4.19013	4.26354	0.0222273	0.0134233	0.105595	0.0743429
chr1	12109565	12109656	46520	0	+	0.659341	(0.59,1]	chr1	6014	1	CDS	CDS:UTR3:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	4.14483	4.190065	4.2353	0.0183207	0.0165254	0.0945306	0.0873033
chr11	61803755	61803767	12405944	0	-	0.666667	(0.59,1]	chr11	960598	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	4.14483	4.190065	4.2353	0.0183207	0.0165254	0.0945306	0.0873033
chr15	75639713	75639801	15379436	0	-	0.659091	(0.59,1]	chr15	1216084	1	CDS	CDS:EXON_MRNA	IMP3	ENSG00000177971.9	ENST00000314852.2:ENST00000403490.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.14483	4.190065	4.2353	0.0183207	0.0165254	0.0945306	0.0873033
chr16	29805262	29805310	15626759	0	+	0.708333	(0.59,1]	chr16	1239305	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000160827.9:ENST00000400751.9:ENST00000569382.2:ENST00000565736.1:ENST00000568312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.14483	4.190065	4.2353	0.0183207	0.0165254	0.0945306	0.0873033
chrX	153951840	153951920	19275608	0	-	0.625	(0.59,1]	chrX	1637902	1	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.14483	4.190065	4.2353	0.0183207	0.0165254	0.0945306	0.0873033
chr4	99082045	99082116	5548334	0	-	0.535211	(0.53,0.59]	chr4	443185	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5:ENST00000505652.1:ENST00000508146.5:ENST00000507102.5:ENST00000502386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.45052	4.18968	5.92884	0.00355092	1.11987e-6	0.0300049	4.4003e-5
chr5	96800861	96800933	6721366	0	-	0.430556	(0.42,0.455]	chr5	517477	1	CDS	CDS:EXON_MRNA:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.8515	4.18958	4.52766	0.0119089	1.58778e-6	0.0686664	5.89925e-5
chr12	4302384	4302483	12704467	0	+	0.515152	(0.49,0.53]	chr12	985544	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	3.21317	4.18937	5.16557	3.08783e-4	6.36135e-5	0.00445935	0.00136069
chr21	37511954	37512049	18117397	0	+	0.442105	(0.42,0.455]	chr21	1536306	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000646224.1:ENST00000646351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.59462	4.18921	5.7838	0.0062772	1.6512e-6	0.0445415	6.0825e-5
chr7	27458162	27458260	8739176	0	-	0.520408	(0.49,0.53]	chr7	667100	1	EXON_PSEUDO	EXON_PSEUDO	EIF4HP1	ENSG00000233830.2	ENST00000453115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	47	2	2.72712	4.189205	5.65129	9.78408e-4	3.38975e-6	0.0109424	1.23071e-4
chr1	183544929	183545024	597932	0	+	0.557895	(0.53,0.59]	chr1	62098	1	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.85662	4.18915	5.52168	4.88685e-4	1.48967e-5	0.00686067	3.81697e-4
chr4	56460130	56460229	4848731	0	+	0.494949	(0.49,0.53]	chr4	399473	7	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	30	553	2	3.8946	4.18898	4.48336	1.35135e-11	1e-12	2.48688e-9	2.25522e-10
chr12	57781842	57781942	12904688	0	+	0.43	(0.42,0.455]	chr12	1006008	13	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT3:RP11-571M6.15	ENSG00000123427.17:ENSG00000257921.6	ENST00000300209.13:ENST00000651284.1:ENST00000333012.5:ENST00000471530.5:ENST00000553083.1:ENST00000546504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.8515	4.18872	4.52594	0.0119089	0.00144145	0.0686664	0.0147046
chr12	122624597	122624688	13124773	0	+	0.43956	(0.42,0.455]	chr12	1025304	1	CDS	CDS:EXON_MRNA	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000534995.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.8515	4.18872	4.52594	0.0119089	0.00144145	0.0686664	0.0147046
chr16	69341552	69341652	15723542	0	+	0.44	(0.42,0.455]	chr16	1252013	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NIP7	ENSG00000132603.15	ENST00000563364.3:ENST00000254940.10:ENST00000254941.6:ENST00000567202.5:ENST00000562523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.8515	4.18872	4.52594	0.0119089	0.00144145	0.0686664	0.0147046
chr5	132192910	132193009	6833450	0	-	0.454545	(0.42,0.455]	chr5	522667	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000474628.1:ENST00000428369.6:ENST00000506807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	3.8515	4.18872	4.52594	0.0119089	0.00144145	0.0686664	0.0147046
chr5	154049822	154049919	6310019	0	+	0.443299	(0.42,0.455]	chr5	492185	1	CDS	CDS:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000439768.2:ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000522177.1:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.8515	4.18872	4.52594	0.0119089	0.00144145	0.0686664	0.0147046
chr8	109296445	109296507	10009072	0	-	0.435484	(0.42,0.455]	chr8	754429	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000679027.1:ENST00000678094.1:ENST00000519607.5:ENST00000427660.6:ENST00000676569.1:ENST00000677737.1:ENST00000521439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.8515	4.18872	4.52594	0.0119089	0.00144145	0.0686664	0.0147046
chr11	9295242	9295342	12265260	0	-	0.31	(0.29,0.33]	chr11	948418	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5:ENST00000533723.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.73761	4.188675	4.63974	4.81181e-4	2.33029e-4	0.00677016	0.00355688
chr10	104314988	104315084	11678450	0	-	0.5625	(0.53,0.59]	chr10	891073	6	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.81839	4.188495	4.5586	0.0184435	0.00161229	0.0945306	0.0169168
chr5	87412694	87412794	6681577	0	-	0.56	(0.53,0.59]	chr5	515411	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000256897.9:ENST00000504878.1:ENST00000513499.5:ENST00000510020.5:ENST00000505230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.81839	4.188495	4.5586	0.0184435	0.00161229	0.0945306	0.0169168
chr6	11735567	11735625	7602192	0	-	0.534483	(0.53,0.59]	chr6	579798	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADTRP	ENSG00000111863.13	ENST00000505099.5:ENST00000414691.8:ENST00000514824.5:ENST00000512139.5:ENST00000229583.9:ENST00000503285.1:ENST00000379415.6:ENST00000506810.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.81839	4.188495	4.5586	0.0184435	0.00161229	0.0945306	0.0169168
chrX	40052108	40052208	19044899	0	-	0.52	(0.49,0.53]	chrX	1618693	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	3.05512	4.188455	5.32179	1.59562e-4	2.63311e-5	0.00263091	6.73425e-4
chr21	45468513	45468604	18145463	0	+	0.681319	(0.59,1]	chr21	1539676	4	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	3.36737	4.18841	5.00945	0.00149725	4.62051e-5	0.0159607	9.60045e-4
chr1	161802051	161802124	502236	0	+	0.561644	(0.53,0.59]	chr1	54518	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr11	119336915	119337014	12163917	0	+	0.585859	(0.53,0.59]	chr11	938094	6	UTR3	UTR3:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr17	7247063	7247142	16429160	0	-	0.582278	(0.53,0.59]	chr17	1339361	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	CTDNEP1:RP1-4G17.5	ENSG00000175826.12:ENSG00000262302.1	ENST00000574322.6:ENST00000570828.5:ENST00000573600.5:ENST00000574205.5:ENST00000318988.10:ENST00000572043.5:ENST00000576613.5:ENST00000575783.5:ENST00000570380.5:ENST00000571409.1:ENST00000577138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr21	45476910	45476980	18145552	0	+	0.542857	(0.53,0.59]	chr21	1539697	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr7	66955717	66955815	8307713	0	+	0.561224	(0.53,0.59]	chr7	633399	3	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr9	94444963	94445036	10367638	0	+	0.561644	(0.53,0.59]	chr9	780555	1	CDS	CDS:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr9	137099788	137099881	10514651	0	+	0.569892	(0.53,0.59]	chr9	796981	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000683113.1:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.82407	4.1884049999999995	4.55274	0.0179666	0.00167999	0.0918323	0.0164993
chr17	7309635	7309735	16103911	0	+	0.53	(0.49,0.53]	chr17	1296294	1	CDS_START	CDS_START:CDS:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000355068.4:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000575001.1:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	3.34224	4.188025	5.03381	1.49689e-4	6.47355e-6	0.0024973	2.10845e-4
chr9	104759338	104759435	10395932	0	+	0.329897	(0.29,0.33]	chr9	783255	1	UTR3	UTR3:EXON_MRNA	NIPSNAP3A	ENSG00000136783.10	ENST00000374767.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.05815	4.18795	5.31775	1.75443e-4	1.06766e-5	0.00284534	3.17854e-4
chr14	22922500	22922559	14527906	0	-	0.440678	(0.42,0.455]	chr14	1138129	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5:ENST00000557758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.46349	4.187810000000001	4.91213	9.0025e-4	1.75074e-4	0.0102618	0.00306313
chr16	46668990	46669052	15927208	0	-	0.435484	(0.42,0.455]	chr16	1277421	2	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000562420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.46349	4.187810000000001	4.91213	9.0025e-4	1.75074e-4	0.0102618	0.00306313
chr1	25294163	25294259	903337	0	-	0.458333	(0.455,0.49]	chr1	93966	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RSRP1:SDHDP6	ENSG00000117616.18:ENSG00000224183.1	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000414693.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	29	2	3.30384	4.18778	5.07172	0.00184955	8.3067e-5	0.0178046	0.00171126
chr10	130180112	130180210	11319799	0	+	0.622449	(0.59,1]	chr10	862991	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLRX3	ENSG00000108010.12	ENST00000481034.1:ENST00000368644.5:ENST00000496195.1:ENST00000619341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.32455	4.1871	6.04965	0.0520547	9.85057e-6	0.193787	2.72926e-4
chr15	27180570	27180670	14834332	0	+	0.44	(0.42,0.455]	chr15	1164206	1534	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.46169	4.18691	4.91213	0.03884	1.75074e-4	0.149227	0.00306313
chr22	30421160	30421205	18470443	0	-	0.422222	(0.42,0.455]	chr22	1575959	1	SS5_PROX	SS5_PROX:INTRON	RNF215	ENSG00000099999.15	ENST00000431544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.46169	4.18691	4.91213	0.03884	1.75074e-4	0.149227	0.00306313
chr7	108337852	108337952	8991116	0	-	0.49	(0.455,0.49]	chr7	688160	93	INTRON	INTRON	NRCAM	ENSG00000091129.21	ENST00000413765.6:ENST00000379028.8:ENST00000351718.8:ENST00000379024.8:ENST00000613830.4:ENST00000418239.1	protein_coding	protein_coding	protein_coding	protein_coding	13	205	2	2.38992	4.186685000000001	5.98345	1.02231e-4	1e-12	0.00199025	2.25522e-10
chr2	74873843	74873943	1893244	0	+	0.46	(0.455,0.49]	chr2	179580	1	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.96925	4.186475	5.4037	0.00698725	1.20695e-5	0.0473262	3.52389e-4
chr1	180863707	180863790	586396	0	+	0.433735	(0.42,0.455]	chr1	60719	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3:ENST00000498177.1:ENST00000464817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	3.05889	4.18643	5.31397	0.00524205	2.50619e-9	0.0399155	2.34666e-7
chr15	89201574	89201671	15434479	0	-	0.474227	(0.455,0.49]	chr15	1220451	6	EXON_PSEUDO	EXON_PSEUDO	RP11-326A19.5	ENSG00000259948.2	ENST00000563131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	2.9967	4.186395	5.37609	0.00650423	2.05373e-5	0.0454205	4.97369e-4
chr12	68552994	68553092	13394541	0	-	0.561224	(0.53,0.59]	chr12	1055115	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP12	ENSG00000240087.3	ENST00000435879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	80	2	4.13142	4.186205	4.24099	1.28258e-5	8.11888e-7	3.70041e-4	3.35153e-5
chr21	33517524	33517608	18220469	0	-	0.547619	(0.53,0.59]	chr21	1546353	3	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	3.55001	4.18614	4.82227	6.11776e-4	2.15841e-7	0.00818575	1.08163e-5
chr4	7112321	7112399	5298799	0	-	0.551282	(0.53,0.59]	chr4	426892	4	EXON_SMALL	EXON_SMALL	RN7SKP36	ENSG00000200867.1	ENST00000363997.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	3	52	2	2.62668	4.18613	5.74558	0.00157636	3.61407e-6	0.015761	1.29307e-4
chr2	27392783	27392880	2570546	0	-	0.525773	(0.49,0.53]	chr2	231573	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	PPM1G:FTH1P3	ENSG00000115241.11:ENSG00000213453.3	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1:ENST00000394290.3	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	3	59	2	1.78308	4.186095	6.58911	0.0425234	3.52807e-9	0.167547	3.14964e-7
chr12	95514194	95514291	13025189	0	+	0.350515	(0.33,0.36]	chr12	1014031	4	UTR3	UTR3:EXON_MRNA	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	3.79315	4.185919999999999	4.57869	1.14009e-6	9.26618e-7	4.91686e-5	3.75253e-5
chr16	23066459	23066558	15892438	0	-	0.393939	(0.39,0.42]	chr16	1271856	52	UTR3	UTR3:EXON_MRNA	USP31	ENSG00000103404.15	ENST00000219689.12	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.73294	4.185885	4.63883	0.0190864	5.68159e-4	0.0958835	0.0077844
chr16	85522799	85522898	15796547	0	+	0.414141	(0.39,0.42]	chr16	1256988	321	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.73294	4.185885	4.63883	0.0190864	5.68159e-4	0.0958835	0.0077844
chr22	49449410	49449510	18542358	0	-	0.42	(0.39,0.42]	chr22	1583944	78	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.73294	4.185885	4.63883	0.0190864	5.68159e-4	0.0958835	0.0077844
chr5	136139148	136139248	6240858	0	+	0.4	(0.39,0.42]	chr5	485981	48	INTRON	INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000511116.5:ENST00000507118.5:ENST00000514777.1:ENST00000509297.6:ENST00000509962.5:ENST00000515005.1:ENST00000506223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.73294	4.185885	4.63883	0.0190864	5.68159e-4	0.0958835	0.0077844
chr14	105143076	105143170	14799980	0	-	0.638298	(0.59,1]	chr14	1160100	4	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	3.06258	4.185755	5.30893	0.00616167	4.67312e-4	0.0438642	0.00661038
chr19	55486676	55486766	17396438	0	+	0.744444	(0.59,1]	chr19	1448723	4	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NAT14	ENSG00000090971.5	ENST00000205194.5:ENST00000592719.1:ENST00000587400.1:ENST00000588985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.06258	4.185755	5.30893	0.00616167	4.67312e-4	0.0438642	0.00661038
chr19	16102027	16102125	17247359	0	+	0.479592	(0.455,0.49]	chr19	1422983	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1:ENST00000591226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.73142	4.1856	4.63978	6.94032e-4	2.35261e-4	0.00876781	0.00356397
chrX	101401720	101401809	19151731	0	-	0.460674	(0.455,0.49]	chrX	1628690	2	CDS	CDS:EXON_MRNA	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.73142	4.1856	4.63978	6.94032e-4	2.35261e-4	0.00876781	0.00356397
chr1	42926224	42926321	966969	0	-	0.309278	(0.29,0.33]	chr1	101864	10	UTR3	UTR3:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	120	2	3.99033	4.18519	4.38005	7.90423e-9	1.67836e-9	6.94893e-7	1.66066e-7
chr18	36893404	36893504	16831800	0	+	0.5	(0.49,0.53]	chr18	1387978	71	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	4.01171	4.18513	4.35855	4.88513e-5	5.06834e-6	0.00100497	1.7169e-4
chr4	2826414	2826505	4686451	0	+	0.527473	(0.49,0.53]	chr4	388713	2	EXON_MRNA	EXON_MRNA:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	3.69037	4.185045	4.67972	0.0226513	6.94757e-4	0.10505	0.00876781
chr22	25380780	25380880	18451732	0	-	0.59	(0.53,0.59]	chr22	1574002	44	INTRON	INTRON	LRP5L	ENSG00000100068.14	ENST00000444995.7:ENST00000650168.1:ENST00000650500.2:ENST00000468442.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	42	2	2.35511	4.18501	6.01491	0.0445399	6.18274e-7	0.172163	2.65059e-5
chr1	236548161	236548259	769777	0	+	0.397959	(0.39,0.42]	chr1	77622	1	UTR3	UTR3:EXON_MRNA	LGALS8	ENSG00000116977.19	ENST00000527974.5:ENST00000352231.6:ENST00000526589.5:ENST00000450372.6:ENST00000416919.6:ENST00000341872.10:ENST00000366584.9:ENST00000323938.10:ENST00000526634.5:ENST00000528259.5:ENST00000489586.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.0503	4.184995	5.31969	0.00570576	2.68682e-5	0.0424438	6.19143e-4
chr1	21850116	21850192	890921	0	-	0.644737	(0.59,1]	chr1	92366	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	169	2	3.98278	4.184635	4.38649	8.2153e-6	5.2008e-7	2.56136e-4	2.29012e-5
chr20	45895037	45895135	17803039	0	+	0.571429	(0.53,0.59]	chr20	1505446	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.7898	4.1845550000000005	5.57931	0.0128364	1.05602e-5	0.0719798	2.89015e-4
chr5	137753696	137753786	6858097	0	-	0.566667	(0.53,0.59]	chr5	524501	6	CDS	CDS:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.7898	4.1845550000000005	5.57931	0.0128364	1.05602e-5	0.0719798	2.89015e-4
chr4	139704015	139704048	5129539	0	+	0.515152	(0.49,0.53]	chr4	415336	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	3.16986	4.184345	5.19883	3.95698e-4	6.30063e-5	0.00587341	0.00124286
chr5	112160813	112160910	6150842	0	+	0.515464	(0.49,0.53]	chr5	480408	4	EXON_LNCRNA	EXON_LNCRNA	EPB41L4A-AS1	ENSG00000224032.7	ENST00000663232.1:ENST00000427306.2:ENST00000413221.7:ENST00000442823.2	lncRNA	lncRNA	lncRNA	lncRNA	2	61	2	3.94177	4.184200000000001	4.42663	0.0104929	6.48162e-8	0.063428	3.85234e-6
chr1	64985593	64985692	1074568	0	-	0.515152	(0.49,0.53]	chr1	109760	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	JAK1:LINC01359:SLC2A3P2	ENSG00000162434.13:ENSG00000226891.9:ENSG00000185031.6	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1:ENST00000447748.5:ENST00000635398.1:ENST00000635626.1:ENST00000634604.2:ENST00000666562.1:ENST00000634775.1:ENST00000654678.1:ENST00000658189.1:ENST00000647968.1:ENST00000654680.1:ENST00000668343.1:ENST00000415842.5:ENST00000669029.1:ENST00000654707.1:ENST00000664673.1:ENST00000444349.6:ENST00000663993.1:ENST00000331747.6	protein_coding	protein_coding	protein_coding:lncRNA:processed_pseudogene	protein_coding:retained_intron:lncRNA:processed_pseudogene	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr1	160358660	160358757	496819	0	+	0.525773	(0.49,0.53]	chr1	53515	5	UTR3	UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr1	202733497	202733594	1451764	0	-	0.505155	(0.49,0.53]	chr1	145787	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000472822.6:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1:ENST00000235790.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr1	204410353	204410448	1457481	0	-	0.515789	(0.49,0.53]	chr1	146827	10	CDS	CDS:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr14	24192735	24192824	14534239	0	-	0.494382	(0.49,0.53]	chr14	1139707	2	CDS	CDS:EXON_MRNA:INTRON	TM9SF1:RP11-468E2.1	ENSG00000100926.15:ENSG00000254692.1	ENST00000261789.9:ENST00000528669.5:ENST00000530611.1:ENST00000529332.5:ENST00000524835.5:ENST00000532632.1:ENST00000396854.8:ENST00000531406.1:ENST00000528895.5:ENST00000530563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr16	52935269	52935360	15664856	0	+	0.516484	(0.49,0.53]	chr16	1245040	6	EXON_PSEUDO	EXON_PSEUDO	PHBP21	ENSG00000260326.1	ENST00000562636.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr19	34400507	34400602	17300572	0	+	0.505263	(0.49,0.53]	chr19	1429897	6	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000592740.5:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr19	44977342	44977401	17350165	0	+	0.525424	(0.49,0.53]	chr19	1439354	1	CDS	CDS:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000587537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr22	39014256	39014309	18368399	0	+	0.509434	(0.49,0.53]	chr22	1562828	1	UTR5	UTR5:EXON_MRNA	APOBEC3C	ENSG00000244509.4	ENST00000361441.5:ENST00000428892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr7	134293063	134293162	9078551	0	-	0.494949	(0.49,0.53]	chr7	693094	39	UTR3	UTR3:EXON_MRNA	SLC35B4	ENSG00000205060.11	ENST00000378509.9	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr9	97648079	97648151	10380651	0	+	0.5	(0.49,0.53]	chr9	781744	2	CDS	CDS:UTR3:EXON_MRNA	NCBP1	ENSG00000136937.13	ENST00000478100.3:ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.73494	4.18416	4.63338	0.0189345	9.56909e-4	0.0934721	0.010724
chr7	130166256	130166353	9063143	0	-	0.309278	(0.29,0.33]	chr7	692134	17	UTR3	UTR3:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.63813	4.184105	5.73008	0.00803229	1.12475e-6	0.0528968	4.41253e-5
chr5	138947301	138947387	6862742	0	-	0.662791	(0.59,1]	chr5	525289	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000515008.1:ENST00000509534.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	3.42646	4.18388	4.9413	0.00191468	1.57704e-4	0.0190905	0.00261303
chr17	65014156	65014256	16642822	0	-	0.25	[0,0.29]	chr17	1368930	50	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.79311	4.183635	4.57416	6.75561e-4	1.75012e-4	0.00873562	0.00283967
chr14	75176416	75176479	14709501	0	-	0.52381	(0.49,0.53]	chr14	1152561	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000555873.1:ENST00000555085.1:ENST00000622441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.51981	4.183625	4.84744	6.88328e-4	3.70203e-4	0.00876781	0.00515475
chr1	151264831	151264918	471366	0	+	0.517241	(0.49,0.53]	chr1	48093	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5:ENST00000469786.2:ENST00000445776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	3.33324	4.1835249999999995	5.03381	0.00162947	1.49689e-4	0.0169972	0.0024973
chr16	74493048	74493140	16031425	0	-	0.413043	(0.39,0.42]	chr16	1287357	2	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	4.16663	4.18346	4.20029	1.84729e-5	1.46608e-5	5.02409e-4	3.77398e-4
chr15	58640776	58640868	15311119	0	-	0.478261	(0.455,0.49]	chr15	1208319	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	98	2	2.72051	4.18328	5.64605	4.13074e-4	9.99958e-11	0.00605644	1.35982e-8
chr9	98015772	98015857	10381345	0	+	0.211765	[0,0.29]	chr9	781897	5	UTR3	UTR3:EXON_MRNA	ANP32B	ENSG00000136938.9	ENST00000339399.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.78212	4.1831499999999995	4.58418	3.32518e-4	9.10536e-7	0.00506816	3.69555e-5
chr20	37184179	37184272	17777408	0	+	0.55914	(0.53,0.59]	chr20	1501995	1	CDS	CDS:UTR5:EXON_MRNA	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	78	2	3.70393	4.18293	4.66193	1.64739e-5	7.20737e-7	4.57148e-4	3.019e-5
chr1	51636004	51636104	190133	0	+	0.41	(0.39,0.42]	chr1	24414	184	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr1	179846264	179846358	1394648	0	-	0.414894	(0.39,0.42]	chr1	141291	2	CDS	CDS:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr3	141743508	141743556	3788810	0	+	0.416667	(0.39,0.42]	chr3	323382	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RNF7:RP11-271K21.13	ENSG00000114125.14:ENSG00000285558.1	ENST00000480908.1:ENST00000393000.3:ENST00000273480.4:ENST00000477012.5:ENST00000477393.1:ENST00000648835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr3	196348751	196348850	4664952	0	-	0.40404	(0.39,0.42]	chr3	385869	12	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr7	97135587	97135687	8416603	0	+	0.41	(0.39,0.42]	chr7	640836	173	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr7	135614158	135614215	8552979	0	+	0.403509	(0.39,0.42]	chr7	652808	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr9	99128964	99129064	10383692	0	+	0.41	(0.39,0.42]	chr9	782264	1	CDS_START	CDS_START:CDS:EXON_MRNA	TGFBR1	ENSG00000106799.13	ENST00000547314.5:ENST00000552573.6:ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5:ENST00000549021.5:ENST00000548365.5:ENST00000550253.1:ENST00000546584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.93996	4.1829	4.42584	0.00841622	0.00199429	0.054565	0.0189001
chr6	125262962	125263058	7383894	0	+	0.572917	(0.53,0.59]	chr6	566005	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPD52L1	ENSG00000111907.21	ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000527711.5:ENST00000528193.5:ENST00000532429.5:ENST00000534199.5:ENST00000392482.6:ENST00000524679.1:ENST00000532423.5:ENST00000530868.1:ENST00000576089.1:ENST00000571678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	4.00393	4.18263	4.36133	0.0108084	5.91026e-6	0.064368	1.77972e-4
chr8	38260563	38260661	9292748	0	+	0.489796	(0.455,0.49]	chr8	710795	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000517385.5:ENST00000529845.5:ENST00000520176.5:ENST00000528613.1:ENST00000526071.1:ENST00000529872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	48	2	3.2935	4.18261	5.07172	8.3067e-5	3.58585e-5	0.00171126	7.84153e-4
chr10	132782892	132782990	11328571	0	+	0.346939	(0.33,0.36]	chr10	863595	9	UTR3	UTR3:EXON_MRNA	INPP5A	ENSG00000068383.19	ENST00000368594.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.02603	4.182495	4.33896	0.0071776	0.00182033	0.048188	0.0183913
chr14	74480273	74480288	14705284	0	-	0.333333	(0.33,0.36]	chr14	1151735	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	NPC2:MIR4709	ENSG00000119655.11:ENSG00000283944.1	ENST00000434013.6:ENST00000541064.5:ENST00000577272.1:ENST00000555619.6:ENST00000238633.6:ENST00000554482.1:ENST00000553490.5:ENST00000556009.5:ENST00000557510.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	14	2	4.02603	4.182495	4.33896	0.0071776	0.00182033	0.048188	0.0183913
chr3	45537045	45537145	3448074	0	+	0.34	(0.33,0.36]	chr3	300336	126	INTRON	INTRON	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1:ENST00000467936.5:ENST00000485461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.02603	4.182495	4.33896	0.0071776	0.00182033	0.048188	0.0183913
chr4	48423255	48423353	4826832	0	+	0.336735	(0.33,0.36]	chr4	397749	13	UTR3	UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.02603	4.182495	4.33896	0.0071776	0.00182033	0.048188	0.0183913
chr1	21828997	21829079	890669	0	-	0.719512	(0.59,1]	chr1	92232	3	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	4.04046	4.18226	4.32406	9.42839e-5	2.43308e-5	0.0017195000000000001	6.29277e-4
chr7	157192739	157192832	8635982	0	+	0.408602	(0.39,0.42]	chr7	659695	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	UBE3C:RPS27AP12	ENSG00000009335.18:ENSG00000225224.1	ENST00000348165.10:ENST00000429552.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	34	2	2.49701	4.182235	5.86746	0.0339607	7.74696e-7	0.141431	3.2172e-5
chr6	137198554	137198639	7988060	0	-	0.376471	(0.36,0.39]	chr6	610795	6	CDS	CDS:UTR3:EXON_MRNA	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	3.99	4.182115	4.37423	6.1616e-5	4.42053e-6	0.00133408	1.39924e-4
chr1	203309110	203309208	668399	0	+	0.469388	(0.455,0.49]	chr1	67323	18	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BTG2	ENSG00000159388.6	ENST00000475157.1:ENST00000290551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	4.00069	4.18188	4.36307	0.00218641	5.13615e-5	0.0208941	0.00104999
chr10	32188421	32188520	11442264	0	-	0.484848	(0.455,0.49]	chr10	872504	2	EXON_PSEUDO	EXON_PSEUDO	PPIAP31	ENSG00000217094.2	ENST00000405422.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	4.00069	4.18188	4.36307	0.00218641	5.13615e-5	0.0208941	0.00104999
chr15	80180146	80180246	15045718	0	+	0.65	(0.59,1]	chr15	1183742	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAH	ENSG00000103876.14	ENST00000407106.5:ENST00000261755.9:ENST00000682012.1:ENST00000561421.6:ENST00000539156.5:ENST00000646551.1:ENST00000561353.2:ENST00000559217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.82178	4.181805	4.54183	0.0070583	2.76767e-4	0.0478044	0.00409634
chr3	52707712	52707812	3479522	0	+	0.42	(0.39,0.42]	chr3	305087	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SPCS1	ENSG00000114902.14	ENST00000423431.5:ENST00000233025.11:ENST00000619898.5:ENST00000474945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	3.12234	4.181615	5.24089	1.28898e-4	4.38152e-9	0.0024153	3.79596e-7
chr1	182878020	182878096	595087	0	+	0.407895	(0.39,0.42]	chr1	61637	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000474446.5:ENST00000485081.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.93737	4.181605	4.42584	0.00199429	7.80292e-5	0.0189001	0.00162998
chr1	111460916	111460994	407354	0	+	0.474359	(0.455,0.49]	chr1	40191	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	64	2	3.77785	4.181604999999999	4.58536	9.38535e-6	9.22269e-7	2.61344e-4	4.12764e-5
chr15	78897067	78897164	15042655	0	+	0.381443	(0.36,0.39]	chr15	1183475	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	3.00115	4.18153	5.36191	0.0012486	1.79406e-5	0.0137762	4.45904e-4
chr19	12799923	12799989	17470977	0	-	0.515152	(0.49,0.53]	chr19	1463178	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000498785.1:ENST00000478908.1:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	121	2	3.43884	4.18147	4.9241	3.18417e-6	6.20752e-10	1.06148e-4	7.55585e-8
chr6	155307092	155307192	8036492	0	-	0.47	(0.455,0.49]	chr6	614493	37	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000470239.1:ENST00000475849.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.20069	4.181419999999999	5.16215	0.00285821	5.04348e-5	0.0245841	0.00113788
chr7	76057409	76057493	8342306	0	+	0.559524	(0.53,0.59]	chr7	636224	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1:ENST00000492663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	139	2	4.02854	4.18119	4.33384	1.65563e-7	2.94032e-8	9.74137e-6	1.96201e-6
chr1	212361557	212361656	702770	0	+	0.50505	(0.49,0.53]	chr1	71311	9	UTR3	UTR3:EXON_MRNA	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.68246	4.181089999999999	4.67972	6.94757e-4	3.06313e-4	0.00876781	0.00442973
chr17	58355718	58355818	16288575	0	+	0.53	(0.49,0.53]	chr17	1321146	21	INTRON	INTRON	TSPOAP1-AS1	ENSG00000265148.6	ENST00000583841.1	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	3.68246	4.181089999999999	4.67972	6.94757e-4	3.06313e-4	0.00876781	0.00442973
chr2	96293033	96293095	2790468	0	-	0.467742	(0.455,0.49]	chr2	248797	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.85172	4.181075	5.51043	0.010864	9.08728e-6	0.0643837	2.53877e-4
chr19	35256747	35256847	17303991	0	+	0.43	(0.42,0.455]	chr19	1430658	57	INTRON	INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	4.05954	4.180655	4.30177	0.00617886	7.69083e-6	0.0439741	2.20857e-4
chr13	21147342	21147438	13633493	0	+	0.28125	[0,0.29]	chr13	1074772	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SAP18	ENSG00000150459.12	ENST00000621421.4:ENST00000382533.8:ENST00000607003.5:ENST00000492245.5:ENST00000467636.1:ENST00000471009.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.65703	4.18065	5.70427	0.00320067	1.20169e-6	0.0280721	4.6687e-5
chr10	50307981	50308064	11486533	0	-	0.493976	(0.49,0.53]	chr10	876699	1	CDS	CDS:UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.94177	4.180540000000001	4.41931	0.0104929	3.4941e-6	0.063428	1.14163e-4
chr11	119335864	119335956	12163906	0	+	0.619565	(0.59,1]	chr11	938092	8	CDS	CDS:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr12	52949431	52949510	12884237	0	+	0.607595	(0.59,1]	chr12	1001690	3	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr17	81845991	81846010	16709517	0	-	0.736842	(0.59,1]	chr17	1377684	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr19	4839291	4839372	17434014	0	-	0.679012	(0.59,1]	chr19	1455548	1	CDS	CDS:EXON_MRNA	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000589163.5:ENST00000585479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr19	17567472	17567540	17254666	0	+	0.617647	(0.59,1]	chr19	1424444	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000600474.1:ENST00000601354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr19	47228846	47228946	17596397	0	-	0.67	(0.59,1]	chr19	1481600	4	SS3_PROX	SS3_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr2	27233625	27233716	1691666	0	+	0.604396	(0.59,1]	chr2	165725	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000475695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr21	32347145	32347240	18213559	0	-	0.663158	(0.59,1]	chr21	1545548	3	CDS	CDS:EXON_MRNA	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr3	123116230	123116298	3706619	0	+	0.617647	(0.59,1]	chr3	316817	1	CDS	CDS:EXON_MRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr5	140194565	140194652	6252747	0	+	0.597701	(0.59,1]	chr5	487338	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6:ENST00000644078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr7	100608003	100608103	8428021	0	+	0.61	(0.59,1]	chr7	643279	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr9	33932561	33932628	10633540	0	-	0.61194	(0.59,1]	chr9	803829	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000474372.1:ENST00000488443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	23	2	3.98751	4.18037	4.37323	0.0301044	0.00990413	0.129773	0.061536
chr6	31693358	31693432	7661794	0	-	0.581081	(0.53,0.59]	chr6	585012	1	CDS	CDS:UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000498420.5:ENST00000477462.5:ENST00000482224.5:ENST00000468037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	3.39416	4.18036	4.96656	0.00126006	6.94912e-8	0.013837	4.08427e-6
chr11	63976742	63976842	11977995	0	+	0.53	(0.49,0.53]	chr11	918585	3	INTRON	INTRON	AP000721.4	ENSG00000256100.1	ENST00000535431.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.07719	4.180255	4.28332	0.0074411	0.00338762	0.0492519	0.0288632
chr15	35254667	35254767	15209011	0	-	0.51	(0.49,0.53]	chr15	1197490	337	INTRON	INTRON	DPH6	ENSG00000134146.12	ENST00000560386.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	4.07719	4.180255	4.28332	0.0074411	0.00338762	0.0492519	0.0288632
chr19	49429959	49430052	17606392	0	-	0.494624	(0.49,0.53]	chr19	1483928	7	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.07719	4.180255	4.28332	0.0074411	0.00338762	0.0492519	0.0288632
chr3	184306104	184306155	3949068	0	+	0.509804	(0.49,0.53]	chr3	332334	2	CDS	CDS:EXON_MRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.07719	4.180255	4.28332	0.0074411	0.00338762	0.0492519	0.0288632
chrX	152750890	152750983	19272312	0	-	0.516129	(0.49,0.53]	chrX	1637024	5	CDS	CDS:EXON_MRNA	MAGEA2	ENSG00000268606.6	ENST00000620710.4:ENST00000611557.4:ENST00000684311.1:ENST00000623806.3:ENST00000623438.3:ENST00000598543.5:ENST00000611674.4:ENST00000595583.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.07719	4.180255	4.28332	0.0074411	0.00338762	0.0492519	0.0288632
chr17	59808835	59808876	16296661	0	+	0.365854	(0.36,0.39]	chr17	1321834	1	CDS	CDS:UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.77302	4.180244999999999	4.58747	0.0162599	6.55819e-4	0.0866586	0.00860229
chr2	36847561	36847661	2594589	0	-	0.37	(0.36,0.39]	chr2	233508	100	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.77302	4.180244999999999	4.58747	0.0162599	6.55819e-4	0.0866586	0.00860229
chr3	60524209	60524309	4225138	0	-	0.37	(0.36,0.39]	chr3	355981	4435	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.77302	4.180244999999999	4.58747	0.0162599	6.55819e-4	0.0866586	0.00860229
chr9	70038193	70038293	10675386	0	-	0.39	(0.36,0.39]	chr9	808266	36	INTRON	INTRON	MAMDC2-AS1	ENSG00000204706.14	ENST00000630191.2:ENST00000628563.2:ENST00000629922.2	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.77302	4.180244999999999	4.58747	0.0162599	6.55819e-4	0.0866586	0.00860229
chr16	31112454	31112538	15633147	0	+	0.619048	(0.59,1]	chr16	1241101	1	UTR3	UTR3:EXON_MRNA	BCKDK	ENSG00000103507.14	ENST00000394951.5:ENST00000287507.7:ENST00000394950.7:ENST00000567530.5:ENST00000219794.11:ENST00000566568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chr17	75818359	75818450	16357690	0	+	0.604396	(0.59,1]	chr17	1328197	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UNK	ENSG00000132478.10	ENST00000589666.6	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chr19	49153406	49153502	17605438	0	-	0.614583	(0.59,1]	chr19	1483739	1	CDS	CDS:EXON_MRNA	HRC	ENSG00000130528.12	ENST00000252825.9:ENST00000598858.5:ENST00000595625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chr22	43162802	43162891	18386635	0	+	0.719101	(0.59,1]	chr22	1565628	1	CDS	CDS:EXON_MRNA	TSPO	ENSG00000100300.18	ENST00000583777.5:ENST00000337554.8:ENST00000329563.8:ENST00000396265.4	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chr8	144086025	144086125	9650278	0	+	0.61	(0.59,1]	chr8	731502	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GPAA1	ENSG00000197858.11	ENST00000355091.9:ENST00000361036.10:ENST00000529638.1:ENST00000530796.1:ENST00000534072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chr9	35675845	35675931	10246553	0	+	0.709302	(0.59,1]	chr9	770801	2	CDS	CDS:EXON_MRNA	CA9	ENSG00000107159.13	ENST00000617161.1:ENST00000378357.9	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chrX	155881396	155881448	18923614	0	+	0.788462	(0.59,1]	chrX	1612621	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	23	2	4.01545	4.180160000000001	4.34487	0.0251889	0.0123678	0.114168	0.0705839
chr11	62631183	62631283	12409771	0	-	0.5	(0.49,0.53]	chr11	961280	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr11	65775381	65775480	12422737	0	-	0.515152	(0.49,0.53]	chr11	964115	16	UTR3	UTR3:EXON_MRNA	AP5B1	ENSG00000254470.3	ENST00000532090.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr16	69718378	69718478	15994954	0	-	0.51	(0.49,0.53]	chr16	1284242	1	CDS_START	CDS_START:CDS:EXON_MRNA	NQO1	ENSG00000181019.13	ENST00000561500.5:ENST00000379047.7:ENST00000320623.10:ENST00000379046.6:ENST00000439109.6:ENST00000564043.1:ENST00000569118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr17	15259093	15259193	16455013	0	-	0.5	(0.49,0.53]	chr17	1343114	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PMP22	ENSG00000109099.16	ENST00000674673.1:ENST00000312280.9:ENST00000494511.7:ENST00000580584.3:ENST00000612492.5:ENST00000395938.7:ENST00000675854.1:ENST00000643451.2:ENST00000675819.1:ENST00000676329.1:ENST00000675551.1:ENST00000676221.1:ENST00000675950.1:ENST00000675808.1:ENST00000674871.1:ENST00000674651.1:ENST00000644020.1:ENST00000676161.1:ENST00000674707.1:ENST00000646419.2:ENST00000395936.7:ENST00000674947.1:ENST00000675197.1:ENST00000675350.1:ENST00000674868.1:ENST00000426385.4:ENST00000580497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr19	3369230	3369329	17201197	0	+	0.50505	(0.49,0.53]	chr19	1413685	22	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr2	96193241	96193296	2789898	0	-	0.490909	(0.49,0.53]	chr2	248628	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000462501.1:ENST00000443962.1:ENST00000495687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr3	185276586	185276686	4625589	0	-	0.5	(0.49,0.53]	chr3	381994	227	INTRON	INTRON	EHHADH	ENSG00000113790.11	ENST00000465178.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr9	34399896	34399993	10636309	0	-	0.525773	(0.49,0.53]	chr9	804174	17	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379089.5:ENST00000379087.5:ENST00000379084.5:ENST00000379081.5:ENST00000379080.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.12263	4.18011	4.23759	0.00591451	0.00436474	0.0427941	0.0335517
chr18	59359030	59359087	17142639	0	-	0.754386	(0.59,1]	chr18	1407670	1	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.77418	4.180085	5.58599	0.0160729	1.04372e-4	0.0860154	0.00186841
chr14	30885544	30885620	14201257	0	+	0.434211	(0.42,0.455]	chr14	1112909	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	3.31161	4.180054999999999	5.0485	0.00186138	2.60143e-8	0.018635	1.76574e-6
chr12	51243538	51243637	12876237	0	+	0.232323	[0,0.29]	chr12	1000617	10	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	3.58568	4.17989	4.7741	8.35785e-5	1.99118e-7	0.00171841	1.01119e-5
chr15	41669379	41669476	14887936	0	+	0.391753	(0.39,0.42]	chr15	1169648	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MGA	ENSG00000174197.17	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.12:ENST00000682463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	3.19588	4.179675	5.16347	0.00321212	6.48089e-5	0.0280721	0.00126536
chr2	86210573	86210668	1926873	0	+	0.4	(0.39,0.42]	chr2	181534	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL35	ENSG00000132313.15	ENST00000254644.12:ENST00000337109.9:ENST00000605125.5:ENST00000409180.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.19588	4.179675	5.16347	0.00321212	6.48089e-5	0.0280721	0.00126536
chr6	130260590	130260690	7958617	0	-	0.57	(0.53,0.59]	chr6	608435	374	INTRON	INTRON	SAMD3	ENSG00000164483.17	ENST00000368134.6:ENST00000529119.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	133	2	3.06939	4.179405	5.28942	6.54756e-4	3.18527e-11	0.00860229	4.89122e-9
chr11	46744193	46744265	12383482	0	-	0.527778	(0.49,0.53]	chr11	955988	2	CDS	CDS:UTR3:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	4.10142	4.179320000000001	4.25722	1.00699e-5	8.9797e-7	3.03291e-4	3.64922e-5
chr2	33021007	33021106	1719022	0	+	0.59596	(0.59,1]	chr2	168640	2	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.56392	4.17921	4.7945	0.0031766	8.86707e-4	0.0279054	0.0101815
chr8	11844437	11844535	9699200	0	-	0.5	(0.49,0.53]	chr8	734804	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	88	2	3.51981	4.17907	4.83833	6.88328e-4	1.63658e-9	0.00876781	1.62532e-7
chr12	103934023	103934091	13056769	0	+	0.397059	(0.39,0.42]	chr12	1017311	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	446	2	3.44672	4.1790400000000005	4.91136	1.3773e-7	1e-12	8.243e-6	2.25522e-10
chr11	123059956	123060028	12636989	0	-	0.458333	(0.455,0.49]	chr11	980718	2	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	111	2	3.78443	4.178975	4.57352	1.89864e-7	1.47696e-8	9.73977e-6	1.18379e-6
chr9	94459603	94459699	10367792	0	+	0.3125	(0.29,0.33]	chr9	780591	3	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.45373	4.178775	5.90382	0.0156405	3.10438e-7	0.084273700000000007	1.47195e-5
chr11	72712780	72712873	12451584	0	-	0.462366	(0.455,0.49]	chr11	968023	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	3.11002	4.17863	5.24724	1.15314e-4	3.09759e-5	0.0020426	7.62166e-4
chr7	30617195	30617278	8203731	0	+	0.506024	(0.49,0.53]	chr7	625831	2	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	108	2	3.68499	4.178595	4.6722	2.9991e-4	3.96163e-10	0.00472028	4.61329e-8
chr5	119247791	119247886	6176439	0	+	0.326316	(0.29,0.33]	chr5	481828	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000505312.5:ENST00000514595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	3.90323	4.178585	4.45394	9.15815e-5	3.60081e-6	0.00168607	1.29307e-4
chr11	123059207	123059261	12636978	0	-	0.481481	(0.455,0.49]	chr11	980711	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000524552.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	66	2	4.06083	4.1785	4.29617	3.56832e-5	1.70053e-7	7.81595e-4	9.96621e-6
chr19	18575139	18575229	17258832	0	+	0.544444	(0.53,0.59]	chr19	1425552	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000595683.5:ENST00000595158.5:ENST00000598780.5:ENST00000599551.5:ENST00000597451.5:ENST00000599595.5:ENST00000596272.5:ENST00000594527.1	protein_coding	protein_coding	protein_coding	protein_coding	10	222	2	4.0474	4.177765	4.30813	2.29929e-9	2.02016e-9	2.35768e-7	1.95181e-7
chr12	6409918	6410013	13186433	0	-	0.515789	(0.49,0.53]	chr12	1032039	4	EXON_PSEUDO	EXON_PSEUDO	RP1-102E24.1	ENSG00000213942.3	ENST00000498412.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	50	2	1.99044	4.177345	6.36425	0.0435903	2.32873e-8	0.170594	1.60638e-6
chr10	32908534	32908634	11443964	0	-	0.38	(0.36,0.39]	chr10	872625	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr15	34250297	34250355	15203905	0	-	0.37931	(0.36,0.39]	chr15	1196773	1	CDS	CDS:EXON_MRNA	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr18	9399826	9399926	16753330	0	+	0.37	(0.36,0.39]	chr18	1381535	4	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr2	232847347	232847421	2433742	0	+	0.364865	(0.36,0.39]	chr2	219582	1	CDS	CDS:EXON_MRNA	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr20	44512897	44512994	17982132	0	-	0.371134	(0.36,0.39]	chr20	1523408	2	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr8	120949037	120949137	9579566	0	+	0.39	(0.36,0.39]	chr8	726822	355	INTRON	INTRON	RP11-369K17.1	ENSG00000253619.1	ENST00000517739.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr9	37854914	37854982	10257422	0	+	0.367647	(0.36,0.39]	chr9	771990	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DCAF10	ENSG00000122741.16	ENST00000242323.8:ENST00000377724.8:ENST00000461549.1:ENST00000483167.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chrX	120868610	120868709	19197565	0	-	0.373737	(0.36,0.39]	chrX	1632224	1	EXON_PSEUDO	EXON_PSEUDO	PA2G4P1	ENSG00000237828.1	ENST00000442248.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	4.0322	4.1772849999999995	4.32237	0.00588589	0.00273222	0.0427941	0.0237575
chr13	26494657	26494755	13656284	0	+	0.479592	(0.455,0.49]	chr13	1076295	3	EXON_LNCRNA	EXON_LNCRNA	RP11-570F6.2	ENSG00000285929.1	ENST00000649055.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr15	101650035	101650135	15479044	0	-	0.46	(0.455,0.49]	chr15	1223780	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TM2D3	ENSG00000184277.13	ENST00000559107.5:ENST00000428002.6:ENST00000558129.5:ENST00000347970.7:ENST00000333202.8:ENST00000561373.1:ENST00000560013.5:ENST00000558677.5:ENST00000559024.5:ENST00000560910.5:ENST00000560212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr16	58574684	58574760	15966812	0	-	0.460526	(0.455,0.49]	chr16	1281234	2	CDS	CDS:UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000569882.1:ENST00000565605.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr2	65316808	65316883	2708801	0	-	0.48	(0.455,0.49]	chr2	241405	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000421087.5:ENST00000474228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr22	30977429	30977527	18344861	0	+	0.459184	(0.455,0.49]	chr22	1559168	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr22	45729424	45729507	18396225	0	+	0.457831	(0.455,0.49]	chr22	1566762	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10:ENST00000640901.1:ENST00000476998.5:ENST00000483549.5:ENST00000435026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr5	72197904	72198002	6027774	0	+	0.479592	(0.455,0.49]	chr5	472560	42	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr5	81084713	81084811	6061133	0	+	0.459184	(0.455,0.49]	chr5	475691	36	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1:ENST00000502677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr5	177483643	177483730	6991688	0	-	0.482759	(0.455,0.49]	chr5	534922	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PDLIM7	ENSG00000196923.14	ENST00000355841.7:ENST00000359895.6:ENST00000493815.5:ENST00000486828.6:ENST00000504380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr6	132787433	132787507	7965661	0	-	0.459459	(0.455,0.49]	chr6	609207	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1:ENST00000367918.1:ENST00000460518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr7	137915924	137916012	9097444	0	-	0.488636	(0.455,0.49]	chr7	694086	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4:ENST00000456390.5:ENST00000452463.5:ENST00000458726.5:ENST00000420629.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr9	113261355	113261453	10425130	0	+	0.459184	(0.455,0.49]	chr9	784741	10	UTR3	UTR3:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.81275	4.177245	4.54174	0.0138827	0.00130137	0.0760883	0.0136936
chr7	100604130	100604217	8427968	0	+	0.666667	(0.59,1]	chr7	643248	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000496269.1:ENST00000462260.1:ENST00000482863.1:ENST00000487172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	69	2	3.48457	4.17717	4.86977	0.00246014	1.16515e-4	0.0230058	0.0020505
chr17	35636398	35636456	16206609	0	+	0.448276	(0.42,0.455]	chr17	1309065	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.57051	4.177155	5.7838	0.0265466	1.6512e-6	0.120071	6.0825e-5
chr13	29514081	29514181	13945214	0	-	0.57	(0.53,0.59]	chr13	1094548	48	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.69065	4.177065	4.66348	0.00107799	3.04331e-4	0.0118238	0.00472028
chr1	10461489	10461589	856675	0	-	0.57	(0.53,0.59]	chr1	86470	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DFFA	ENSG00000160049.12	ENST00000377038.8	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.02054	4.177025	5.33351	0.00577011	4.35359e-5	0.0426551	0.00091744700000000005
chr7	92614940	92615039	8924989	0	-	0.484848	(0.455,0.49]	chr7	681136	102	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.72051	4.176915	5.63332	4.13074e-4	4.15159e-6	0.00605644	1.32627e-4
chr13	50078041	50078141	14022517	0	-	0.3	(0.29,0.33]	chr13	1099831	20	INTRON	INTRON	DLEU2	ENSG00000231607.13	ENST00000621282.4:ENST00000668305.1:ENST00000425586.5:ENST00000458725.6:ENST00000433070.7:ENST00000443587.5:ENST00000659339.1:ENST00000662092.1:ENST00000449579.2:ENST00000421758.5:ENST00000666359.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	3.55049	4.176855	4.80322	6.15323e-4	2.14303e-4	0.00765848	0.00359478
chr19	811764	811857	17189592	0	+	0.473118	(0.455,0.49]	chr19	1411055	11	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	110	2	3.5549	4.17653	4.79816	1.71652e-7	1.33044e-7	1.00318e-5	7.15974e-6
chr6	44422646	44422727	7163103	0	+	0.518519	(0.49,0.53]	chr6	554003	1	CDS	CDS:EXON_MRNA	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	4.12263	4.176245	4.22986	0.00591451	1.25249e-5	0.0427941	3.30689e-4
chr7	101222688	101222774	8431111	0	+	0.581395	(0.53,0.59]	chr7	644151	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNHIT1	ENSG00000106400.12	ENST00000305105.3:ENST00000461205.5:ENST00000492315.5:ENST00000485387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.515	4.1761550000000005	5.8373100000000004	0.0292633	2.06883e-6	0.129773	7.35008e-5
chr1	51805509	51805561	1016455	0	-	0.346154	(0.33,0.36]	chr1	105237	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	3.07605	4.17614	5.27623	6.95237e-5	2.53179e-9	0.00147069	2.36872e-7
chrX	77828722	77828822	19128976	0	-	0.36	(0.33,0.36]	chrX	1626855	31	UTR3	UTR3:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.38729	4.176080000000001	4.96487	1.20567e-4	9.26851e-5	0.00210079	0.00185187
chr12	108645506	108645606	13530478	0	-	0.3	(0.29,0.33]	chr12	1063929	5	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	3.54857	4.175895	4.80322	2.14303e-4	3.71512e-7	0.00359478	1.7147e-5
chr17	81846572	81846629	16709525	0	-	0.54386	(0.53,0.59]	chr17	1377687	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	259	2	4.01153	4.175855	4.34018	1.92278e-7	1.85061e-11	1.10123e-5	3.01703e-9
chr11	65130741	65130823	12421669	0	-	0.670732	(0.59,1]	chr11	963748	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	127	2	2.9891200000000002	4.17583	5.36254	0.00823979	2.75961e-8	0.0540283	1.86044e-6
chr6	34424754	34424840	7673860	0	-	0.476744	(0.455,0.49]	chr6	588074	2	CDS	CDS:EXON_MRNA	RPS10-NUDT3:RPS10	ENSG00000270800.3:ENSG00000124614.16	ENST00000639725.1:ENST00000639877.1:ENST00000605528.2:ENST00000648437.1:ENST00000644700.1:ENST00000344700.8:ENST00000621356.3:ENST00000467531.5:ENST00000464218.5:ENST00000644393.1:ENST00000494077.6:ENST00000480942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	162	2	3.30442	4.175815	5.04721	1.47215e-7	1.45806e-10	7.82938e-6	2.10761e-8
chr2	96865039	96865115	2792280	0	-	0.539474	(0.53,0.59]	chr2	249243	2	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.67993	4.174645	4.66936	0.00103174	3.22778e-4	0.0121443	0.0046122
chr1	54850205	54850301	1030550	0	-	0.520833	(0.49,0.53]	chr1	106987	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	3.23006	4.17437	5.11868	0.00253719	9.66505e-5	0.0233955	0.00175267
chr4	48420198	48420272	4826799	0	+	0.527027	(0.49,0.53]	chr4	397740	2	CDS	CDS:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.23006	4.17437	5.11868	0.00253719	9.66505e-5	0.0233955	0.00175267
chr1	32365626	32365725	922258	0	-	0.525253	(0.49,0.53]	chr1	97129	11	UTR3	UTR3:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.8671	4.17414	5.48118	0.0100489	1.24248e-5	0.0623334	3.28918e-4
chr1	64985396	64985495	1074566	0	-	0.494949	(0.49,0.53]	chr1	109760	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	JAK1:LINC01359:SLC2A3P2	ENSG00000162434.13:ENSG00000226891.9:ENSG00000185031.6	ENST00000672434.1:ENST00000671954.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1:ENST00000447748.5:ENST00000635398.1:ENST00000635626.1:ENST00000634604.2:ENST00000666562.1:ENST00000634775.1:ENST00000654678.1:ENST00000658189.1:ENST00000647968.1:ENST00000654680.1:ENST00000668343.1:ENST00000415842.5:ENST00000669029.1:ENST00000654707.1:ENST00000664673.1:ENST00000444349.6:ENST00000663993.1:ENST00000331747.6	protein_coding	protein_coding	protein_coding:lncRNA:processed_pseudogene	protein_coding:retained_intron:lncRNA:processed_pseudogene	1	32	2	2.8671	4.17414	5.48118	0.0100489	1.24248e-5	0.0623334	3.28918e-4
chr20	45894649	45894741	17803033	0	+	0.576087	(0.53,0.59]	chr20	1505440	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	3.47991	4.1740699999999995	4.86823	4.35895e-4	6.7738e-5	0.00623608	0.0013157
chr17	63764015	63764102	16634854	0	-	0.436782	(0.42,0.455]	chr17	1367610	1	CDS	CDS:UTR5:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	16	282	2	4.00007	4.173935	4.3478	2.16143e-10	8.66374e-12	2.98193e-8	1.52967e-9
chr1	150966755	150966808	1291376	0	-	0.490566	(0.49,0.53]	chr1	128680	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	230	2	3.75665	4.1739	4.59115	8.07806e-9	1.92327e-11	7.08052e-7	3.12091e-9
chr5	96998013	96998079	6118559	0	+	0.30303	(0.29,0.33]	chr5	478812	1	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3:ENST00000474122.1:ENST00000473914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.31653	4.173885	5.03124	0.00261621	9.06368e-5	0.0238929	0.00167558
chr6	166938894	166938951	8083325	0	-	0.526316	(0.49,0.53]	chr6	616960	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000509073.1:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	3.76099	4.17387	4.58675	2.00194e-4	1.05095e-6	0.0034021	4.17035e-5
chr3	184026467	184026566	4622771	0	-	0.50505	(0.49,0.53]	chr3	381686	2	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	2.38097	4.173755	5.96654	0.0425419	4.9393e-7	0.167547	2.18407e-5
chr15	72348043	72348134	15369474	0	-	0.505495	(0.49,0.53]	chr15	1214431	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	4.03034	4.1735050000000005	4.31667	4.26396e-5	1.62178e-7	9.97006e-4	8.48798e-6
chr7	92456462	92456562	8399111	0	+	0.47	(0.455,0.49]	chr7	639707	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GATAD1	ENSG00000157259.8	ENST00000287957.5:ENST00000645746.1:ENST00000493878.1:ENST00000465247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	3.01932	4.173455	5.32759	2.37034e-5	1.92345e-5	5.60012e-4	5.18397e-4
chr11	60900853	60900929	12402806	0	-	0.618421	(0.59,1]	chr11	959916	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.71566	4.17336	4.63106	0.0487443	0.00537945	0.175495	0.0406564
chr17	82520227	82520307	16383755	0	+	0.725	(0.59,1]	chr17	1332688	4	CDS	CDS:EXON_MRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	24	2	3.71566	4.17336	4.63106	0.0487443	0.00537945	0.175495	0.0406564
chr20	45899461	45899538	17987641	0	-	0.597403	(0.59,1]	chr20	1524179	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	0	24	2	3.71566	4.17336	4.63106	0.0487443	0.00537945	0.175495	0.0406564
chr3	179586545	179586632	3928687	0	+	0.436782	(0.42,0.455]	chr3	330213	1	CDS	CDS:EXON_MRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000484312.1:ENST00000461125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.05889	4.173355	5.28782	0.00524205	3.65299e-5	0.0399155	7.95843e-4
chr22	29273800	29273864	18336456	0	+	0.5625	(0.53,0.59]	chr22	1558158	2	CDS	CDS:EXON_MRNA:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.39416	4.173245	4.95233	0.00126006	3.02711e-4	0.013837	0.00439897
chrX	135033363	135033454	18865059	0	+	0.417582	(0.39,0.42]	chrX	1607588	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	3.30353	4.17302	5.04251	3.96559e-5	2.52401e-8	9.4815e-4	1.72157e-6
chr1	11957892	11957943	45320	0	+	0.627451	(0.59,1]	chr1	5751	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000196061.5:ENST00000429000.6:ENST00000465920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	114	2	3.23348	4.172765	5.11205	0.00352837	1.56798e-7	0.0298518	8.23767e-6
chr6	43560923	43561007	7708481	0	-	0.404762	(0.39,0.42]	chr6	591578	1	CDS	CDS:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	4.044	4.172725	4.30145	7.39643e-6	1.34261e-6	2.35326e-4	5.13723e-5
chr7	149005218	149005296	9124749	0	-	0.615385	(0.59,1]	chr7	696960	2	CDS	CDS:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000466592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	376	2	2.72084	4.17268	5.62452	5.97513e-4	3.72635e-12	0.00808684	7.25883e-10
chr22	38291362	38291458	18508100	0	-	0.697917	(0.59,1]	chr22	1579753	8	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.29488	4.1722649999999994	6.04965	0.00407435	9.85057e-6	0.0324137	2.72926e-4
chr1	39028824	39028882	145800	0	+	0.396552	(0.39,0.42]	chr1	18086	1	CDS	CDS:EXON_MRNA	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	3.93679	4.172235	4.40768	3.23284e-6	1.07811e-10	1.18341e-4	1.44945e-8
chr20	10612957	10613055	17900104	0	-	0.377551	(0.36,0.39]	chr20	1514986	2	EXON_PSEUDO	EXON_PSEUDO	RP5-1099D15.1	ENSG00000235036.4	ENST00000456064.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	72	2	3.49852	4.17201	4.8455	2.46365e-6	1.22274e-7	9.41784e-5	6.6551e-6
chr20	4700454	4700549	17661030	0	+	0.494737	(0.49,0.53]	chr20	1493237	6	UTR3	UTR3:EXON_MRNA	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.44951	4.17178	4.89405	0.0405223	2.57983e-4	0.153343	0.00419998
chr11	57817289	57817387	11953249	0	+	0.469388	(0.455,0.49]	chr11	914890	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	101	2	3.59751	4.17142	4.74533	4.2755e-6	3.57868e-9	1.49387e-4	3.18911e-7
chr19	41860254	41860334	17336782	0	+	0.7875	(0.59,1]	chr19	1437252	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000598466.5:ENST00000221975.6:ENST00000598261.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	76	2758	2	4.11662	4.17118	4.22574	1.56471e-10	1.23975e-11	2.24824e-8	2.10169e-9
chr12	14502831	14502931	12745545	0	+	0.36	(0.33,0.36]	chr12	990817	49	UTR3	UTR3:EXON_MRNA	ATF7IP	ENSG00000171681.13	ENST00000261168.9:ENST00000536444.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.51037	4.171175	4.83198	1.88689e-4	5.65559e-5	0.0032588	0.00114087
chr15	74848650	74848701	15375921	0	-	0.352941	(0.33,0.36]	chr15	1215484	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5:ENST00000567638.1:ENST00000565345.5:ENST00000562363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	3.51037	4.171175	4.83198	1.88689e-4	5.65559e-5	0.0032588	0.00114087
chr3	53235013	53235113	4189094	0	-	0.58	(0.53,0.59]	chr3	353808	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000494523.2:ENST00000466765.1:ENST00000487660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.87438	4.171	5.46762	1.55101e-4	1.97761e-5	0.00258327	5.29643e-4
chr19	6441242	6441341	17442469	0	-	0.565657	(0.53,0.59]	chr19	1456911	13	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	3.29875	4.170865	5.04298	0.00191422	1.91383e-4	0.018324	0.0032874
chr11	95067789	95067882	12082863	0	+	0.537634	(0.53,0.59]	chr11	931342	6	CDS	CDS:EXON_MRNA	SRSF8	ENSG00000263465.5	ENST00000587424.3	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.38347	4.170859999999999	4.95825	0.00132446	2.87508e-4	0.0138834	0.00457439
chr19	46838446	46838546	17595625	0	-	0.56	(0.53,0.59]	chr19	1481439	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	AP2S1	ENSG00000042753.12	ENST00000352203.8:ENST00000593442.5:ENST00000599990.5:ENST00000601498.5:ENST00000263270.11:ENST00000597020.5:ENST00000600964.1:ENST00000598027.1:ENST00000601649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.38347	4.170859999999999	4.95825	0.00132446	2.87508e-4	0.0138834	0.00457439
chr11	118757170	118757228	12625507	0	-	0.362069	(0.36,0.39]	chr11	979546	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	2.95056	4.170805	5.39105	9.87614e-5	7.73826e-6	0.00178696	2.43421e-4
chr15	84670756	84670782	15420863	0	-	0.269231	[0,0.29]	chr15	1219610	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000559376.1:ENST00000558217.5:ENST00000558924.1:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.13753	4.170785	5.20404	0.00396668	2.26341e-5	0.0317467	5.9266e-4
chr13	29523339	29523413	13945317	0	-	0.608108	(0.59,1]	chr13	1094584	2	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.84944	4.17064	5.49184	0.0128238	1.61513e-4	0.0719798	0.00265627
chr17	28556215	28556266	16485721	0	-	0.411765	(0.39,0.42]	chr17	1347690	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.44923	4.1705950000000005	4.89196	0.00105208	2.62166e-4	0.0123035	0.0039188
chr12	28306741	28306809	12805927	0	+	0.352941	(0.33,0.36]	chr12	994575	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCDC91	ENSG00000123106.10	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000536442.5:ENST00000544649.5:ENST00000545336.5:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	14	2	3.81832	4.17049	4.52266	0.0135793	8.34989e-4	0.0745701	0.0102956
chr12	121831785	121831882	13120780	0	+	0.340206	(0.33,0.36]	chr12	1024535	17	UTR3	UTR3:EXON_MRNA	SETD1B	ENSG00000139718.11	ENST00000604567.6:ENST00000542440.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81832	4.17049	4.52266	0.0135793	8.34989e-4	0.0745701	0.0102956
chrX	70148073	70148166	18726742	0	+	0.344086	(0.33,0.36]	chrX	1597516	9	INTRON	INTRON	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81832	4.17049	4.52266	0.0135793	8.34989e-4	0.0745701	0.0102956
chr11	119025190	119025259	12626334	0	-	0.594203	(0.59,1]	chr11	979709	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.44238	4.170475	4.89857	0.00182139	0.00158239	0.0176016	0.0167793
chr17	16382497	16382597	16141812	0	+	0.57	(0.53,0.59]	chr17	1300659	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	UBB	ENSG00000170315.14	ENST00000577640.1:ENST00000302182.8:ENST00000535788.1:ENST00000578649.1:ENST00000395839.5:ENST00000395837.1:ENST00000614404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	256	2	3.57852	4.170325	4.76213	1.38809e-7	5.33029e-12	7.41603e-6	1.08198e-9
chr11	118524055	118524154	12159173	0	+	0.464646	(0.455,0.49]	chr11	937154	20	UTR3	UTR3:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000534358.8:ENST00000527839.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.46389	4.17011	4.87633	9.14164e-4	2.95855e-4	0.0110519	0.00432147
chr15	52547443	52547542	15287462	0	-	0.272727	[0,0.29]	chr15	1206631	5	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.26961	4.170030000000001	5.07045	0.00229774	5.08054e-5	0.0210664	0.00114377
chr22	40824724	40824820	18517870	0	-	0.322917	(0.29,0.33]	chr22	1580937	3	UTR3	UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.67277	4.16998	5.66719	0.0255386	1.7577e-6	0.117089	6.42329e-5
chr3	128069562	128069662	3725186	0	+	0.53	(0.49,0.53]	chr3	318514	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1:ENST00000498837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	134	2	3.89368	4.1698699999999995	4.44606	4.1076e-6	4.41645e-10	1.44512e-4	5.08186e-8
chr19	48966635	48966735	17368099	0	+	0.6	(0.59,1]	chr19	1442251	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	79	2851	2	4.16836	4.169565	4.17077	6.3834e-11	2.37376e-11	9.98742e-9	3.76779e-9
chr21	29326344	29326439	18089876	0	+	0.442105	(0.42,0.455]	chr21	1533699	4	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000451655.5:ENST00000447177.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.79103	4.169475	4.54792	9.66045e-4	8.61353e-6	0.0115185	2.43348e-4
chr17	47664213	47664269	16251777	0	+	0.428571	(0.42,0.455]	chr17	1316680	2	CDS	CDS:EXON_MRNA:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	3.53707	4.168855	4.80064	3.0479e-4	6.65925e-6	0.00472028	1.9719e-4
chr5	10280552	10280632	6446897	0	-	0.3625	(0.36,0.39]	chr5	502165	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CMBL	ENSG00000164237.9	ENST00000503834.1:ENST00000296658.4:ENST00000510532.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	3.96324	4.1686700000000005	4.3741	4.74881e-6	2.27748e-7	1.63715e-4	1.13061e-5
chr5	72207991	72208090	6027877	0	+	0.343434	(0.33,0.36]	chr5	472574	29	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	3.75793	4.16831	4.57869	1.23045e-6	1.14009e-6	4.91686e-5	4.76873e-5
chr1	84501944	84501970	1130767	0	-	0.538462	(0.53,0.59]	chr1	112606	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	33	2	3.47419	4.168255	4.86232	8.75273e-4	4.57805e-4	0.0106963	0.00608573
chr1	179341121	179341215	576381	0	+	0.446809	(0.42,0.455]	chr1	59803	2	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8:ENST00000426956.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.96788	4.1680600000000005	5.36824	0.00109784	1.33083e-5	0.0119666	3.81624e-4
chr1	52771490	52771585	195540	0	+	0.357895	(0.33,0.36]	chr1	24923	6	CDS	CDS:EXON_MRNA	ZYG11B	ENSG00000162378.13	ENST00000294353.7:ENST00000545132.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.1284	4.16798	4.20756	0.00407303	0.00386591	0.0324137	0.0310764
chr1	230988319	230988379	751319	0	+	0.35	(0.33,0.36]	chr1	76359	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	4.1284	4.16798	4.20756	0.00407303	0.00386591	0.0324137	0.0310764
chr15	80122699	80122749	15045251	0	+	0.36	(0.33,0.36]	chr15	1183647	1	CDS	CDS:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000558390.5:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1:ENST00000561017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	4.1284	4.16798	4.20756	0.00407303	0.00386591	0.0324137	0.0310764
chr16	1857832	1857930	15823250	0	-	0.357143	(0.33,0.36]	chr16	1261709	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000496541.6:ENST00000460494.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	4.1284	4.16798	4.20756	0.00407303	0.00386591	0.0324137	0.0310764
chr8	70586946	70586999	9881409	0	-	0.339623	(0.33,0.36]	chr8	746928	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.1284	4.16798	4.20756	0.00407303	0.00386591	0.0324137	0.0310764
chr11	73981553	73981632	12458864	0	-	0.481013	(0.455,0.49]	chr11	968531	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000542615.5:ENST00000541027.5:ENST00000539330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	3.57525	4.167865	4.76048	5.24878e-4	3.99985e-4	0.00677371	0.00588767
chr16	1699584	1699682	15488676	0	+	0.510204	(0.49,0.53]	chr16	1226188	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	3.01991	4.16782	5.31573	2.36197e-5	2.59007e-9	6.15843e-4	2.41806e-7
chr3	128630046	128630143	4441410	0	-	0.474227	(0.455,0.49]	chr3	369013	2	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	9	194	2	3.52479	4.16747	4.81015	1.58128e-6	1.50968e-12	6.46312e-5	3.23924e-10
chr1	67409408	67409508	1079100	0	-	0.5	(0.49,0.53]	chr1	110137	17	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.51671	4.16737	5.81803	0.00768763	1.08721e-6	0.050396	4.73591e-5
chr9	89316517	89316610	10349741	0	+	0.387097	(0.36,0.39]	chr9	779005	2	UTR3	UTR3:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.60045	4.166955	4.73346	3.2963e-4	4.13757e-6	0.00504024	1.32555e-4
chr19	17862917	17862972	17255713	0	+	0.636364	(0.59,1]	chr19	1424759	1	CDS	CDS:EXON_MRNA	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000597648.5:ENST00000599870.1	protein_coding	protein_coding	protein_coding	protein_coding	6	241	2	3.87888	4.1669	4.45492	2.50312e-6	3.75431e-8	9.53206e-5	2.41663e-6
chr3	69101986	69102056	3545772	0	+	0.4	(0.39,0.42]	chr3	308500	3	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	ARL6IP5	ENSG00000144746.7	ENST00000273258.4:ENST00000484921.1:ENST00000478935.1:ENST00000470936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.3298	4.166855	5.00391	0.00165391	9.12714e-5	0.0163614	0.00182992
chr22	21621866	21621964	18303180	0	+	0.306122	(0.29,0.33]	chr22	1554195	3	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	110	2	3.21219	4.166845	5.1215	9.92328e-7	5.97887e-11	4.41189e-5	8.61595e-9
chr2	222599927	222600005	3196679	0	-	0.487179	(0.455,0.49]	chr2	281666	1	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.56037	4.1667749999999995	4.77318	5.72551e-4	4.7888e-4	0.0078026	0.00628636
chr12	53006430	53006483	12884281	0	+	0.509434	(0.49,0.53]	chr12	1001711	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	96	2	3.57669	4.166575	4.75646	3.59064e-5	3.50447e-9	8.71318e-4	3.13339e-7
chr1	160997880	160997979	1331417	0	-	0.464646	(0.455,0.49]	chr1	136426	28	UTR3	UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.3605	4.1665399999999995	4.97258	0.00147278	1.84876e-4	0.0157578	0.00296795
chr11	5664808	5664908	12244785	0	-	0.39	(0.36,0.39]	chr11	946298	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2643I7.5:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000642298.1:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	3.74524	4.166354999999999	4.58747	6.55819e-4	1.17259e-5	0.00860229	3.12994e-4
chr20	59001568	59001644	18026147	0	-	0.578947	(0.53,0.59]	chr20	1527952	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	87	2	3.8188	4.16593	4.51306	1.54941e-4	3.8713e-8	0.0028049	2.47685e-6
chr1	32094783	32094877	126285	0	+	0.542553	(0.53,0.59]	chr1	15532	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000336294.10:ENST00000441402.5:ENST00000468135.5:ENST00000476968.5:ENST00000498613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	3.46349	4.16586	4.86823	9.2216e-4	4.35895e-4	0.0104432	0.00623608
chr11	7995049	7995118	11789496	0	+	0.536232	(0.53,0.59]	chr11	902517	2	CDS	CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.46349	4.16586	4.86823	9.2216e-4	4.35895e-4	0.0104432	0.00623608
chr20	41124288	41124387	17790179	0	+	0.30303	(0.29,0.33]	chr20	1503539	11	UTR3	UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	3.20367	4.16575	5.12783	6.11481e-4	5.31593e-5	0.00818575	0.00108035
chr12	109099188	109099284	13078497	0	+	0.427083	(0.42,0.455]	chr12	1019315	1	CDS	CDS:EXON_MRNA	UNG	ENSG00000076248.11	ENST00000242576.7:ENST00000540158.1:ENST00000336865.6:ENST00000539287.5:ENST00000446767.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.0898	4.165565	4.24133	0.00698074	0.00326918	0.0473262	0.0282494
chr14	22901431	22901530	14527674	0	-	0.444444	(0.42,0.455]	chr14	1138036	84	UTR3	UTR3:EXON_MRNA	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.0898	4.165565	4.24133	0.00698074	0.00326918	0.0473262	0.0282494
chr15	42540602	42540701	15240749	0	-	0.424242	(0.42,0.455]	chr15	1200461	29	UTR3	UTR3:EXON_MRNA:INTRON	RP11-265N6.5:LRRC57	ENSG00000285942.1:ENSG00000180979.10	ENST00000650210.1:ENST00000323443.6:ENST00000397130.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.0898	4.165565	4.24133	0.00698074	0.00326918	0.0473262	0.0282494
chr15	63608987	63609080	15334994	0	-	0.430108	(0.42,0.455]	chr15	1210246	5	UTR3	UTR3:EXON_MRNA	HERC1	ENSG00000103657.14	ENST00000443617.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0898	4.165565	4.24133	0.00698074	0.00326918	0.0473262	0.0282494
chr17	61983022	61983114	16628617	0	-	0.423913	(0.42,0.455]	chr17	1366889	10	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0898	4.165565	4.24133	0.00698074	0.00326918	0.0473262	0.0282494
chr3	184115953	184116050	3947756	0	+	0.453608	(0.42,0.455]	chr3	331832	2	EXON_PSEUDO	EXON_PSEUDO	HSP90AA5P	ENSG00000205955.4	ENST00000438353.1	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	0	16	2	4.0898	4.165565	4.24133	0.00698074	0.00326918	0.0473262	0.0282494
chr1	206733206	206733304	683407	0	+	0.540816	(0.53,0.59]	chr1	69024	6	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.75178	4.165545	5.57931	8.47358e-4	1.05602e-5	0.0104407	2.89015e-4
chr5	75354502	75354599	6037098	0	+	0.412371	(0.39,0.42]	chr5	473634	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000515776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	90	2	3.82233	4.165430000000001	4.50853	7.89457e-7	2.9478e-8	3.62648e-5	1.96491e-6
chr15	60355914	60355985	15316785	0	-	0.507042	(0.49,0.53]	chr15	1208943	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	3.08487	4.16533	5.24579	6.09273e-4	4.073e-5	0.00760626	9.64741e-4
chr11	2396866	2396954	11764982	0	+	0.659091	(0.59,1]	chr11	900180	1	UTR3	UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000526072.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	95	2	3.93234	4.165205	4.39807	1.81878e-4	1.36238e-5	0.00317002	3.54656e-4
chr3	72375302	72375402	4278848	0	-	0.34	(0.33,0.36]	chr3	358375	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RYBP	ENSG00000163602.11	ENST00000477973.4:ENST00000676660.1:ENST00000677329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	2.67306	4.165175	5.65729	5.44183e-4	1.06014e-6	0.00693107	4.64027e-5
chr5	179708238	179708258	6414234	0	+	0.5	(0.49,0.53]	chr5	499154	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	3.33324	4.16502	4.9968	0.00162947	4.17016e-8	0.0169972	2.62949e-6
chr17	38918604	38918678	16218410	0	+	0.648649	(0.59,1]	chr17	1310819	1	CDS	CDS:UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.6986	4.16483	4.63106	0.00537945	4.89626e-4	0.0406564	0.00639399
chr21	33520462	33520562	18220500	0	-	0.43	(0.42,0.455]	chr21	1546361	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	49	2	4.02772	4.164745	4.30177	4.30844e-5	7.69083e-6	0.00100091	2.20857e-4
chr8	128041658	128041757	9615223	0	+	0.434343	(0.42,0.455]	chr8	728683	14	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	2	49	2	4.02772	4.164745	4.30177	4.30844e-5	7.69083e-6	0.00100091	2.20857e-4
chrX	141138477	141138561	18878141	0	+	0.488095	(0.455,0.49]	chrX	1608861	1	EXON_PSEUDO	EXON_PSEUDO	RPL36AP52	ENSG00000214925.3	ENST00000399253.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	42	2	3.68903	4.164405	4.63978	6.94032e-4	1.71879e-5	0.00876781	4.32994e-4
chr1	148751637	148751734	458215	0	+	0.257732	[0,0.29]	chr1	45663	23	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.0735	4.1643349999999995	5.25517	0.00785095	2.33041e-5	0.0520241	5.51886e-4
chr14	91384291	91384389	14764071	0	-	0.255102	[0,0.29]	chr14	1156020	41	INTRON	INTRON	CCDC88C	ENSG00000015133.19	ENST00000389857.11:ENST00000554872.5:ENST00000553437.1:ENST00000389856.9:ENST00000553403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.0735	4.1643349999999995	5.25517	0.00785095	2.33041e-5	0.0520241	5.51886e-4
chr5	154817410	154817507	6315045	0	+	0.278351	[0,0.29]	chr5	492515	35	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.0735	4.1643349999999995	5.25517	0.00785095	2.33041e-5	0.0520241	5.51886e-4
chr6	132814713	132814731	7406804	0	+	0.222222	[0,0.29]	chr6	567782	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.0735	4.1643349999999995	5.25517	0.00785095	2.33041e-5	0.0520241	5.51886e-4
chr17	19601262	19601345	16157676	0	+	0.361446	(0.36,0.39]	chr17	1303290	1	EXON_PSEUDO	EXON_PSEUDO	RP11-1113L8.6	ENSG00000266179.2	ENST00000582078.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	125	2	3.80747	4.164225	4.52098	1.0137e-6	1.53911e-10	4.48113e-5	1.98509e-8
chrX	48462006	48462075	19062772	0	-	0.57971	(0.53,0.59]	chrX	1620401	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	3.53663	4.164115	4.7916	4.77731e-5	2.73039e-7	0.00109049	1.31828e-5
chr15	78892211	78892262	15042601	0	+	0.352941	(0.33,0.36]	chr15	1183456	1	CDS	CDS:EXON_MRNA:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559751.1:ENST00000558923.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	3.60198	4.1639800000000005	4.72598	6.01238e-4	3.063e-7	0.00811676	1.45748e-5
chr3	98588783	98588854	4319631	0	-	0.492958	(0.49,0.53]	chr3	360271	2	CDS	CDS:EXON_MRNA	CPOX	ENSG00000080819.9	ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.64815	4.1639349999999995	4.67972	6.94757e-4	2.96068e-6	0.00876781	9.96361e-5
chr6	27838851	27838942	7105171	0	+	0.604396	(0.59,1]	chr6	543471	2	CDS	CDS:EXON_MRNA	H2BC15	ENSG00000233822.5	ENST00000612898.1:ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	419	2	4.11287	4.163930000000001	4.21499	3.48543e-8	1.03432e-8	2.26317e-6	8.80009e-7
chr6	30727952	30728033	7659195	0	-	0.518519	(0.49,0.53]	chr6	584270	4	UTR3	UTR3:EXON_MRNA	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	105	2	3.70364	4.163930000000001	4.62422	1.89513e-6	1.16248e-8	7.58027e-5	8.81286e-7
chr11	17296103	17296157	11827181	0	+	0.351852	(0.33,0.36]	chr11	905353	1	CDS	CDS:EXON_MRNA	NUCB2	ENSG00000070081.17	ENST00000646648.1:ENST00000530527.5:ENST00000526120.5:ENST00000533773.5:ENST00000529010.6:ENST00000323688.10:ENST00000533738.6:ENST00000529313.5:ENST00000533926.5:ENST00000458064.6:ENST00000622082.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.15976	4.16387	5.16798	0.00437542	4.80331e-5	0.0340502	9.91058e-4
chr5	134648978	134649076	6230064	0	+	0.581633	(0.53,0.59]	chr5	485151	3	UTR5	UTR5:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.76914	4.16387	4.5586	0.00161229	1.07544e-5	0.0169168	2.9314e-4
chr10	104315565	104315662	11678456	0	-	0.680412	(0.59,1]	chr10	891073	12	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.61074	4.16367	5.7166	0.025486	5.56053e-5	0.117089	0.0011271
chr1	154378206	154378304	1302972	0	-	0.581633	(0.53,0.59]	chr1	131245	1	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	RP11-350G8.4:RPSAP17	ENSG00000237920.2:ENSG00000226855.1	ENST00000449634.2:ENST00000437336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	2	44	2	2.63316	4.163635	5.69411	0.00474401	5.01544e-6	0.0361423	1.7067e-4
chr10	104315662	104315758	11678457	0	-	0.71875	(0.59,1]	chr10	891073	13	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1:ENST00000458723.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.9891200000000002	4.16356	5.338	0.00823979	3.196e-4	0.0540283	0.00457916
chr8	144085953	144086025	9650277	0	+	0.694444	(0.59,1]	chr8	731501	2	CDS	CDS:EXON_MRNA	GPAA1	ENSG00000197858.11	ENST00000355091.9:ENST00000361036.10:ENST00000529638.1:ENST00000530796.1:ENST00000534072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.9891200000000002	4.16356	5.338	0.00823979	3.196e-4	0.0540283	0.00457916
chr19	40374480	40374550	17328698	0	+	0.628571	(0.59,1]	chr19	1435573	1	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000475983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	3.31734	4.163395	5.00945	0.00149725	2.02803e-5	0.0159607	4.93215e-4
chr3	52524569	52524650	4183364	0	-	0.604938	(0.59,1]	chr3	352877	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NT5DC2	ENSG00000168268.11	ENST00000463947.5:ENST00000307076.8:ENST00000422318.7:ENST00000479024.5:ENST00000462261.5:ENST00000492555.5:ENST00000459839.5:ENST00000469616.1:ENST00000466112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.19	4.163395	5.13679	0.0039188	9.28022e-4	0.0314356	0.0111748
chrX	154435891	154435980	18917919	0	+	0.640449	(0.59,1]	chrX	1611929	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.19	4.163395	5.13679	0.0039188	9.28022e-4	0.0314356	0.0111748
chr14	69386958	69387058	14687568	0	-	0.43	(0.42,0.455]	chr14	1150264	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	3.42604	4.16337	4.9007	1.46189e-5	7.03867e-8	3.76794e-4	4.57575e-6
chr1	180189551	180189612	582835	0	+	0.52459	(0.49,0.53]	chr1	60562	1	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.72252	4.16327	5.60402	0.0161474	5.78803e-6	0.0860154	1.75119e-4
chr17	28880088	28880182	16488319	0	-	0.617021	(0.59,1]	chr17	1348326	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.91328	4.163265	5.41325	5.13816e-4	3.01546e-4	0.00665221	0.00472028
chr22	19039042	19039121	18430052	0	-	0.607595	(0.59,1]	chr22	1570341	2	CDS	CDS:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	3.75616	4.163265	4.57037	0.0054994	3.02973e-5	0.0402071	7.49264e-4
chr3	128056708	128056774	3725048	0	+	0.484848	(0.455,0.49]	chr3	318470	1	CDS	CDS:EXON_MRNA:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000481210.5:ENST00000243253.8:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	3.65079	4.16293	4.67507	3.61776e-4	5.16001e-7	0.00544764	2.27446e-5
chr17	83026774	83026874	16715077	0	-	0.64	(0.59,1]	chr17	1378983	119	INTRON	INTRON	B3GNTL1	ENSG00000175711.8	ENST00000320865.3:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.58133	4.162555	4.74378	0.00312942	8.92036e-4	0.0264364	0.010856
chr11	64243450	64243497	11979727	0	+	0.574468	(0.53,0.59]	chr11	918927	1	CDS	CDS:UTR3:EXON_MRNA	FKBP2:RP11-783K16.16	ENSG00000173486.14:ENSG00000286264.2	ENST00000536642.5:ENST00000541388.1:ENST00000309366.9:ENST00000652762.2:ENST00000449942.6:ENST00000650773.1:ENST00000652094.1:ENST00000535135.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	2.98531	4.162395	5.33948	7.82534e-5	4.08763e-5	0.00148756	9.64741e-4
chr6	119179818	119179918	7919327	0	-	0.42	(0.39,0.42]	chr6	606472	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.18155	4.162375	6.1432	0.0283931	9.87413e-8	0.127654	5.5198e-6
chr12	6982728	6982782	13189007	0	-	0.5	(0.49,0.53]	chr12	1032865	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5:ENST00000540090.5:ENST00000543794.5:ENST00000536797.5:ENST00000620843.1:ENST00000536971.1:ENST00000545459.5:ENST00000538910.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.8967	4.1623	4.4279	0.0128791	0.00196987	0.0725185	0.0193972
chr15	34245692	34245779	15203858	0	-	0.528736	(0.49,0.53]	chr15	1196767	1	CDS	CDS:EXON_MRNA	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.8967	4.1623	4.4279	0.0128791	0.00196987	0.0725185	0.0193972
chr17	83027173	83027273	16715081	0	-	0.53	(0.49,0.53]	chr17	1378983	123	INTRON	INTRON	B3GNTL1	ENSG00000175711.8	ENST00000320865.3:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.8967	4.1623	4.4279	0.0128791	0.00196987	0.0725185	0.0193972
chr2	128190038	128190137	2060512	0	+	0.525253	(0.49,0.53]	chr2	193397	4	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.8967	4.1623	4.4279	0.0128791	0.00196987	0.0725185	0.0193972
chr5	177600560	177600660	6407921	0	+	0.52	(0.49,0.53]	chr5	498336	3	SS5_PROX	SS5_PROX:INTRON	B4GALT7	ENSG00000027847.14	ENST00000029410.10:ENST00000502420.1:ENST00000505433.5:ENST00000510761.1:ENST00000505468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.8967	4.1623	4.4279	0.0128791	0.00196987	0.0725185	0.0193972
chr12	47759915	47760015	12859992	0	+	0.46	(0.455,0.49]	chr12	998286	3	SS3_PROX	SS3_PROX:INTRON	SLC48A1	ENSG00000211584.14	ENST00000548498.5:ENST00000547002.5:ENST00000549243.5	protein_coding	protein_coding	protein_coding	protein_coding	5	98	2	4.0979	4.16223	4.22656	3.04208e-7	7.58387e-8	1.62675e-5	4.3988e-6
chr12	113388916	113389013	13101743	0	+	0.639175	(0.59,1]	chr12	1022448	4	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.24972	4.162125	5.07453	0.00314037	0.00117617	0.0264943	0.0132131
chr4	56460427	56460526	4848734	0	+	0.444444	(0.42,0.455]	chr4	399473	10	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	37	616	2	3.84211	4.162100000000001	4.48209	4.67515e-12	1e-12	9.65888e-10	2.25522e-10
chr1	151315751	151315841	1292650	0	-	0.522222	(0.49,0.53]	chr1	129099	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PI4KB	ENSG00000143393.17	ENST00000368874.8:ENST00000368873.6:ENST00000368875.6:ENST00000529142.5:ENST00000368872.5:ENST00000430800.5:ENST00000489223.2:ENST00000438243.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr12	111450548	111450646	13092103	0	+	0.520408	(0.49,0.53]	chr12	1021116	24	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr13	51807031	51807130	14030492	0	-	0.525253	(0.49,0.53]	chr13	1100316	30	INTRON	INTRON	RP11-147H23.3	ENSG00000285444.1	ENST00000642706.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr16	68822499	68822586	15718753	0	+	0.505747	(0.49,0.53]	chr16	1251570	3	SS5_PROX	SS5_PROX:INTRON	CDH1	ENSG00000039068.20	ENST00000261769.10:ENST00000566612.5:ENST00000422392.6:ENST00000566510.5:ENST00000562836.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr18	9257652	9257750	16752384	0	+	0.520408	(0.49,0.53]	chr18	1381467	36	CDS	CDS:EXON_MRNA	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr3	123154970	123155041	3707017	0	+	0.492958	(0.49,0.53]	chr3	316856	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000467157.1:ENST00000469649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr4	2249292	2249390	5283082	0	-	0.510204	(0.49,0.53]	chr4	425429	20	UTR3	UTR3:EXON_MRNA	MXD4	ENSG00000123933.17	ENST00000337190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chrX	40589040	40589095	18667450	0	+	0.527273	(0.49,0.53]	chrX	1591841	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	ATP6AP2	ENSG00000182220.15	ENST00000436783.6:ENST00000636409.1:ENST00000487051.2:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000486558.6:ENST00000637954.1:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chrX	53559353	53559442	19077455	0	-	0.516854	(0.49,0.53]	chrX	1622765	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chrX	130065633	130065732	19220956	0	-	0.525253	(0.49,0.53]	chrX	1633279	18	UTR3	UTR3:EXON_MRNA	ELF4	ENSG00000102034.17	ENST00000308167.10:ENST00000335997.11:ENST00000615377.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.94177	4.161845	4.38192	0.0104929	0.00259709	0.063428	0.0229695
chr15	87396207	87396307	15425851	0	-	0.33	(0.29,0.33]	chr15	1219996	690	INTRON	INTRON	RP11-648K4.2	ENSG00000259560.2	ENST00000665121.1:ENST00000656130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	3.76009	4.161725000000001	4.56336	8.8231e-4	3.08518e-4	0.0101404	0.00476847
chr21	15878673	15878772	18052308	0	+	0.323232	(0.29,0.33]	chr21	1532047	3	UTR3	UTR3:EXON_MRNA	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000478932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.76009	4.161725000000001	4.56336	8.8231e-4	3.08518e-4	0.0101404	0.00476847
chr3	141913651	141913743	3790061	0	+	0.402174	(0.39,0.42]	chr3	323475	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	315	2	3.51778	4.1616599999999995	4.80554	7.01206e-8	1e-12	4.56413e-6	2.25522e-10
chr10	87505462	87505552	11173433	0	+	0.7	(0.59,1]	chr10	849103	6	CDS	CDS:EXON_MRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.59461	4.1615	5.72839	0.0259455	7.24021e-5	0.117079	0.0015254
chr2	43223742	43223838	2618841	0	-	0.427083	(0.42,0.455]	chr2	235738	15	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	4.02772	4.161495	4.29527	4.30844e-5	1.35329e-8	0.00100091	1.00777e-6
chr21	37202535	37202631	18115589	0	+	0.364583	(0.36,0.39]	chr21	1536145	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.63115	4.161385	5.69162	0.0245975	2.15744e-6	0.114841	7.62296e-5
chr2	38298072	38298143	2602712	0	-	0.323944	(0.29,0.33]	chr2	234406	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2:ENST00000477642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.62683	4.161065	4.6953	6.18968e-4	4.88271e-4	0.00822794	0.00638318
chr5	80633876	80633934	6667429	0	-	0.327586	(0.29,0.33]	chr5	514723	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.62683	4.161065	4.6953	6.18968e-4	4.88271e-4	0.00822794	0.00638318
chr1	119740385	119740451	432708	0	+	0.560606	(0.53,0.59]	chr1	42803	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000641213.1:ENST00000641947.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641023.2:ENST00000369409.9:ENST00000641375.1:ENST00000641891.1:ENST00000641756.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1:ENST00000641939.1:ENST00000482968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr11	67610380	67610447	11997064	0	+	0.537313	(0.53,0.59]	chr11	923216	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000529867.5:ENST00000533075.5:ENST00000530638.1:ENST00000526770.5:ENST00000526169.1:ENST00000533919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr11	72005300	72005369	12447050	0	-	0.550725	(0.53,0.59]	chr11	967236	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000541584.5:ENST00000540626.5:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000541262.5:ENST00000545721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr11	119335497	119335589	12163902	0	+	0.565217	(0.53,0.59]	chr11	938092	4	CDS	CDS:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr12	68626869	68626948	13394553	0	-	0.582278	(0.53,0.59]	chr12	1055117	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P12	ENSG00000234040.3	ENST00000427342.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr12	122095062	122095162	13122653	0	+	0.54	(0.53,0.59]	chr12	1024773	154	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr19	40366383	40366483	17328608	0	+	0.58	(0.53,0.59]	chr19	1435544	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5:ENST00000409281.5:ENST00000493006.1:ENST00000359274.5:ENST00000464586.1:ENST00000485448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr19	49635385	49635480	17607014	0	-	0.578947	(0.53,0.59]	chr19	1484084	2	UTR3	UTR3:EXON_MRNA	RRAS	ENSG00000126458.4	ENST00000246792.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr20	56370569	56370659	18019692	0	-	0.555556	(0.53,0.59]	chr20	1527158	1	CDS	CDS:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr3	129256067	129256154	3730401	0	+	0.551724	(0.53,0.59]	chr3	318899	1	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr6	170659027	170659127	7556975	0	+	0.59	(0.53,0.59]	chr6	576995	186	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr8	23024187	23024260	9755825	0	-	0.547945	(0.53,0.59]	chr8	737510	1	CDS	CDS:UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5:ENST00000347739.3:ENST00000523504.5:ENST00000520109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr9	124877138	124877237	10460192	0	+	0.565657	(0.53,0.59]	chr9	787912	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARPC5L	ENSG00000136950.13	ENST00000353214.6:ENST00000259477.6:ENST00000465124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.15805	4.16094	4.16383	0.00680952	0.00659193	0.0468196	0.0454205
chr12	28264520	28264620	12805497	0	+	0.31	(0.29,0.33]	chr12	994551	47	INTRON	INTRON	CCDC91	ENSG00000123106.10	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000536442.5:ENST00000544649.5:ENST00000545336.5:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	13	2	3.86651	4.160925	4.45534	0.0112245	0.00110984	0.0665375	0.0127344
chr13	83027124	83027224	14098156	0	-	0.32	(0.29,0.33]	chr13	1103596	2482	INTRON	INTRON	RP11-400M8.1	ENSG00000286385.1	ENST00000663739.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.86651	4.160925	4.45534	0.0112245	0.00110984	0.0665375	0.0127344
chr3	182920258	182920356	3944920	0	+	0.316327	(0.29,0.33]	chr3	331294	23	UTR3	UTR3:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.86651	4.160925	4.45534	0.0112245	0.00110984	0.0665375	0.0127344
chr4	87137579	87137678	4941146	0	+	0.323232	(0.29,0.33]	chr4	405799	20	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.86651	4.160925	4.45534	0.0112245	0.00110984	0.0665375	0.0127344
chr5	28938280	28938380	5915214	0	+	0.33	(0.29,0.33]	chr5	463658	111	INTRON	INTRON	LINC02109	ENSG00000259786.7	ENST00000658190.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.86651	4.160925	4.45534	0.0112245	0.00110984	0.0665375	0.0127344
chr5	34203218	34203317	6530122	0	-	0.292929	(0.29,0.33]	chr5	505459	19	INTRON	INTRON	RP11-1023L17.1	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5:ENST00000512782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	13	2	3.86651	4.160925	4.45534	0.0112245	0.00110984	0.0665375	0.0127344
chr1	220025201	220025258	1511263	0	-	0.438596	(0.42,0.455]	chr1	151099	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.34191	4.160815	5.97972	0.0159091	4.13864e-7	0.0854674	1.88179e-5
chr5	142000670	142000767	6878173	0	-	0.28866000000000003	[0,0.29]	chr5	526950	1	UTR3	UTR3:EXON_MRNA:INTRON	GNPDA1	ENSG00000113552.16	ENST00000513454.5:ENST00000311337.11:ENST00000500692.6:ENST00000503794.5:ENST00000508177.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.82443	4.16078	5.49713	0.0180803	5.03778e-6	0.0920398	1.5587e-4
chr6	26045650	26045721	7101000	0	+	0.633803	(0.59,1]	chr6	542753	3	CDS	CDS:EXON_MRNA	H3C3	ENSG00000287080.2	ENST00000612966.3	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	4.03263	4.16053	4.28843	1.11254e-4	2.52144e-5	0.00213212	5.85193e-4
chr21	29066980	29067071	18202053	0	-	0.362637	(0.36,0.39]	chr21	1544745	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	117	2	4.1373	4.16043	4.18356	5.05154e-7	1.529e-9	2.49522e-5	1.5342e-7
chr22	21762047	21762147	18442371	0	-	0.53	(0.49,0.53]	chr22	1572508	25	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	7	146	2	3.91897	4.16043	4.40189	3.38714e-7	6.83461e-10	1.77759e-5	7.45532e-8
chr6	52273292	52273356	7736682	0	-	0.515625	(0.49,0.53]	chr6	593717	2	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	3.96227	4.160410000000001	4.35855	5.06834e-6	2.55585e-6	1.7169e-4	8.83735e-5
chr16	28981978	28982056	15621968	0	+	0.641026	(0.59,1]	chr16	1238807	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-231C14.10:SPNS1:RP11-264B17.3	ENSG00000288630.1:ENSG00000169682.18:ENSG00000261067.7	ENST00000675058.1:ENST00000565975.5:ENST00000311008.16:ENST00000323081.12:ENST00000334536.12:ENST00000569969.5:ENST00000352260.11:ENST00000566059.5:ENST00000564476.1:ENST00000561868.1:ENST00000568829.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	0	23	2	3.84557	4.16037	4.47517	0.0410704	0.00735659	0.163285	0.0491503
chr17	75847547	75847609	16685240	0	-	0.645161	(0.59,1]	chr17	1373627	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5:ENST00000588373.5:ENST00000433525.6:ENST00000589236.1:ENST00000416574.6:ENST00000589642.5:ENST00000587374.5:ENST00000593002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.84557	4.16037	4.47517	0.0410704	0.00735659	0.163285	0.0491503
chr19	4361220	4361315	17431401	0	-	0.652632	(0.59,1]	chr19	1454998	10	UTR3	UTR3:EXON_MRNA	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.84557	4.16037	4.47517	0.0410704	0.00735659	0.163285	0.0491503
chr2	12023423	12023523	1638662	0	+	0.61	(0.59,1]	chr2	162592	152	INTRON	INTRON	MIR3681HG	ENSG00000224184.6	ENST00000438292.5:ENST00000451644.5:ENST00000412294.5:ENST00000665111.1:ENST00000450916.1	lncRNA	lncRNA	lncRNA	lncRNA	0	23	2	3.84557	4.16037	4.47517	0.0410704	0.00735659	0.163285	0.0491503
chr3	47420699	47420772	4160746	0	-	0.657534	(0.59,1]	chr3	348128	3	CDS	CDS:UTR3:EXON_MRNA	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5:ENST00000465628.1:ENST00000468965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	23	2	3.84557	4.16037	4.47517	0.0410704	0.00735659	0.163285	0.0491503
chr19	38717926	38718000	17323631	0	+	0.567568	(0.53,0.59]	chr19	1434329	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	73	2	3.12183	4.16033	5.19883	8.7034e-5	1.21728e-5	0.00177086	3.23744e-4
chr16	28482326	28482382	15905535	0	-	0.482143	(0.455,0.49]	chr16	1273616	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RP11-435I10.4:CLN3	ENSG00000261832.6:ENSG00000188603.22	ENST00000635887.1:ENST00000637376.1:ENST00000636078.1:ENST00000636503.1:ENST00000637378.1:ENST00000568224.4:ENST00000636017.1:ENST00000636866.1:ENST00000637299.1:ENST00000638036.1:ENST00000636766.1:ENST00000637745.1:ENST00000637100.1:ENST00000569430.7:ENST00000359984.12:ENST00000360019.8:ENST00000636147.2:ENST00000564091.6:ENST00000563874.5:ENST00000357857.14:ENST00000333496.14:ENST00000561689.6:ENST00000395653.9:ENST00000357806.11:ENST00000568076.6:ENST00000636907.1:ENST00000637184.1:ENST00000636839.1:ENST00000637107.1:ENST00000636351.1:ENST00000636977.1:ENST00000637578.1:ENST00000565354.5:ENST00000635958.1:ENST00000567963.6:ENST00000568452.6:ENST00000637871.1:ENST00000565316.6:ENST00000628023.3:ENST00000636228.1:ENST00000635861.1:ENST00000636172.1:ENST00000355477.10:ENST00000565140.5:ENST00000566057.5:ENST00000569030.5:ENST00000637699.1:ENST00000568422.6:ENST00000637050.1:ENST00000636853.1:ENST00000566824.6:ENST00000636685.1:ENST00000635973.1:ENST00000568497.6:ENST00000564574.5:ENST00000568472.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	4.1185600000000004	4.1602250000000005	4.20189	0.00397662	2.49433e-5	0.0322851	5.8178e-4
chr2	53814859	53814935	1813305	0	+	0.407895	(0.39,0.42]	chr2	173296	1	CDS	CDS:EXON_MRNA	ERLEC1	ENSG00000068912.14	ENST00000185150.9:ENST00000378239.5:ENST00000405123.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.68154	4.160185	4.63883	5.68159e-4	3.05414e-4	0.0077844	0.00442973
chr21	29344588	29344685	18090062	0	+	0.391753	(0.39,0.42]	chr21	1533713	19	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	4.14964	4.160125	4.17061	5.90745e-7	5.05646e-7	2.55031e-5	2.49522e-5
chr19	14120458	14120558	17478637	0	-	0.62	(0.59,1]	chr19	1464244	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ASF1B	ENSG00000105011.9	ENST00000263382.8:ENST00000592798.5:ENST00000590835.5:ENST00000589468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	23	2	3.87333	4.16002	4.44671	0.0348991	0.00931497	0.141505	0.0586162
chr11	123059550	123059628	12636984	0	-	0.435897	(0.42,0.455]	chr11	980716	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	198	2	3.52348	4.15943	4.79538	1.79784e-7	1e-12	9.28825e-6	2.46312e-10
chrX	65735266	65735348	18716313	0	+	0.52439	(0.49,0.53]	chrX	1596859	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	6	117	2	3.70429	4.159395	4.6145	3.86335e-7	1.14101e-8	1.76791e-5	9.51023e-7
chr14	90403914	90403968	14455566	0	+	0.407407	(0.39,0.42]	chr14	1128576	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CALM1	ENSG00000198668.13	ENST00000557020.5:ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553995.5:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000555267.1:ENST00000553422.1:ENST00000554296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.76141	4.15932	4.55723	0.00117753	2.14058e-4	0.0127276	0.00359478
chr15	78498824	78498921	15040139	0	+	0.412371	(0.39,0.42]	chr15	1183144	8	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.76141	4.15932	4.55723	0.00117753	2.14058e-4	0.0127276	0.00359478
chr1	1727595	1727693	829151	0	-	0.326531	(0.29,0.33]	chr1	82803	18	INTRON	INTRON	RP1-283E3.8:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	0	13	2	4.0747	4.159285000000001	4.24387	0.00577533	0.00263476	0.0417823	0.0239118
chr10	60159001	60159101	11519811	0	-	0.33	(0.29,0.33]	chr10	877951	126	INTRON	INTRON	ANK3	ENSG00000151150.22	ENST00000280772.7:ENST00000373827.6:ENST00000503366.5:ENST00000622427.4:ENST00000474360.1:ENST00000460468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	4.0747	4.159285000000001	4.24387	0.00577533	0.00263476	0.0417823	0.0239118
chr15	42228765	42228820	15239019	0	-	0.327273	(0.29,0.33]	chr15	1200201	2	CDS	CDS:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000564329.1:ENST00000566014.1:ENST00000562946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	4.0747	4.159285000000001	4.24387	0.00577533	0.00263476	0.0417823	0.0239118
chr3	20153711	20153810	3343192	0	+	0.292929	(0.29,0.33]	chr3	293809	13	UTR3	UTR3:EXON_MRNA	KAT2B	ENSG00000114166.8	ENST00000263754.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.0747	4.159285000000001	4.24387	0.00577533	0.00263476	0.0417823	0.0239118
chr8	104490383	104490479	9989191	0	-	0.302083	(0.29,0.33]	chr8	753783	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LRP12	ENSG00000147650.12	ENST00000424843.6:ENST00000276654.10:ENST00000518375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	4.0747	4.159285000000001	4.24387	0.00577533	0.00263476	0.0417823	0.0239118
chr2	83595147	83595243	1917465	0	+	0.458333	(0.455,0.49]	chr2	180248	3	EXON_PSEUDO	EXON_PSEUDO	RPL37P10	ENSG00000224627.1	ENST00000412884.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	71	2	3.89235	4.15923	4.42611	9.60445e-5	6.1811e-8	0.00190731	3.69893e-6
chr2	106697426	106697522	2825354	0	-	0.479167	(0.455,0.49]	chr2	252231	2	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	110	2	3.24013	4.15919	5.07825	5.30989e-5	1.43906e-10	0.00118379	1.87127e-8
chr17	71620977	71621068	16346674	0	+	0.516484	(0.49,0.53]	chr17	1325791	1	EXON_PSEUDO	EXON_PSEUDO	MYL6P5	ENSG00000228118.3	ENST00000412707.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.68499	4.159185	4.63338	9.56909e-4	2.9991e-4	0.010724	0.00472028
chr18	12718575	12718635	16763501	0	+	0.416667	(0.39,0.42]	chr18	1382678	2	CDS	CDS:EXON_MRNA:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.4261	4.15914	4.89218	0.00107164	1.6518e-4	0.0118238	0.0029267300000000002
chr11	18403693	18403737	11831521	0	+	0.477273	(0.455,0.49]	chr11	906023	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	501	2	3.76581	4.159135	4.55246	1.68621e-11	1e-12	2.77887e-9	2.46312e-10
chr2	86777449	86777548	1928630	0	+	0.373737	(0.36,0.39]	chr2	181779	42	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.58476	4.15911	4.73346	5.01956e-4	3.2963e-4	0.00653592	0.00504024
chr6	27824336	27824436	7105157	0	+	0.62	(0.59,1]	chr6	543467	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C11	ENSG00000197238.5	ENST00000355057.3	protein_coding	protein_coding	protein_coding	protein_coding	16	583	2	3.99927	4.159045	4.31882	6.80361e-9	3.04633e-9	6.07564e-7	2.77568e-7
chr2	62222817	62222916	1845101	0	+	0.424242	(0.42,0.455]	chr2	175154	6	CDS	CDS:EXON_MRNA	B3GNT2	ENSG00000170340.11	ENST00000301998.5:ENST00000405767.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.4231	4.158989999999999	4.89488	0.00112541	9.35766e-8	0.0128481	5.27504e-6
chr1	154963802	154963902	1306105	0	-	0.52	(0.49,0.53]	chr1	131617	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PYGO2:SHC1	ENSG00000163348.4:ENSG00000160691.19	ENST00000483463.1:ENST00000368453.8:ENST00000368450.5:ENST00000448116.7:ENST00000368449.8:ENST00000368445.9:ENST00000490667.1:ENST00000444664.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.11892	4.158875	5.19883	0.00398244	6.30063e-5	0.0322851	0.00124286
chr6	7882090	7882185	7587976	0	-	0.421053	(0.42,0.455]	chr6	578854	7	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	1.97508	4.15869	6.3423	0.0147202	2.51668e-8	0.0802571	1.71825e-6
chr1	28537907	28538007	117421	0	+	0.51	(0.49,0.53]	chr1	14375	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000683442.1:ENST00000373833.10:ENST00000373832.5:ENST00000373831.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.52637	4.158615	4.79086	6.68602e-4	4.20783e-4	0.00820018	0.00611538
chr7	97181489	97181580	8417066	0	+	0.318681	(0.29,0.33]	chr7	640854	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	4.12067	4.15841	4.19615	2.40819e-5	2.2256e-5	5.84518e-4	5.6648e-4
chr1	154266500	154266568	480115	0	+	0.529412	(0.49,0.53]	chr1	49730	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1:ENST00000484819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.88887	4.158385	4.4279	0.00196987	9.98984e-5	0.0193972	0.00180257
chr11	6217168	6217266	12248717	0	-	0.510204	(0.49,0.53]	chr11	946506	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	FAM160A2	ENSG00000051009.11	ENST00000265978.8:ENST00000449352.7:ENST00000524416.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.88887	4.158385	4.4279	0.00196987	9.98984e-5	0.0193972	0.00180257
chr3	10126295	10126394	3302349	0	+	0.545455	(0.53,0.59]	chr3	290648	1	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.11779	4.15831	5.19883	5.11883e-4	8.7034e-5	0.00664583	0.00177086
chr1	19235190	19235252	877308	0	-	0.612903	(0.59,1]	chr1	90483	2	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.30708	4.158265	5.00945	0.00252451	0.00149725	0.0226777	0.0159607
chr1	225920454	225920554	1531285	0	-	0.6	(0.59,1]	chr1	153170	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.30708	4.158265	5.00945	0.00252451	0.00149725	0.0226777	0.0159607
chr13	29524131	29524192	13945327	0	-	0.606557	(0.59,1]	chr13	1094590	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.06258	4.15819	5.2538	0.00616167	5.85045e-4	0.0438642	0.00793559
chr11	60850892	60850986	11966835	0	+	0.457447	(0.455,0.49]	chr11	916389	7	UTR3	UTR3:EXON_MRNA	CCDC86	ENSG00000110104.13	ENST00000227520.10:ENST00000535217.1:ENST00000649393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.06914	4.158189999999999	5.24724	6.6649e-4	3.09759e-5	0.00820018	7.62166e-4
chr11	4126683	4126758	11774352	0	+	0.413333	(0.39,0.42]	chr11	901021	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5:ENST00000531591.5:ENST00000529109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.32811	4.15818	4.98825	0.00182819	1.62756e-4	0.0183913	0.00266622
chr3	72377091	72377191	4278866	0	-	0.42	(0.39,0.42]	chr3	358375	54	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RYBP	ENSG00000163602.11	ENST00000477973.4:ENST00000676660.1:ENST00000677329.1:ENST00000676841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.32811	4.15818	4.98825	0.00182819	1.62756e-4	0.0183913	0.00266622
chr5	176509585	176509683	6402704	0	+	0.418367	(0.39,0.42]	chr5	497383	28	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.32811	4.15818	4.98825	0.00182819	1.62756e-4	0.0183913	0.00266622
chr14	102043874	102043959	14495842	0	+	0.564706	(0.53,0.59]	chr14	1133256	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000646418.1:ENST00000642716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.1234	4.1581399999999995	5.19288	0.00390623	9.22873e-5	0.0322851	0.0016906
chr2	27215473	27215545	1691451	0	+	0.541667	(0.53,0.59]	chr2	165623	1	CDS	CDS:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000405489.7:ENST00000419744.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.1234	4.1581399999999995	5.19288	0.00390623	9.22873e-5	0.0322851	0.0016906
chr1	160293165	160293234	1328704	0	-	0.492754	(0.49,0.53]	chr1	135985	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.94177	4.1579999999999995	4.37423	0.0104929	4.77238e-6	0.063428	1.49327e-4
chr3	128056774	128056840	3725049	0	+	0.5	(0.49,0.53]	chr3	318470	2	CDS	CDS:EXON_MRNA:INTRON	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000481210.5:ENST00000243253.8:ENST00000424880.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.94177	4.1579999999999995	4.37423	0.0104929	4.77238e-6	0.063428	1.49327e-4
chr3	179615982	179616049	3928826	0	+	0.358209	(0.33,0.36]	chr3	330242	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5:ENST00000491054.1:ENST00000471112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	3.3227	4.15775	4.9928	0.00222616	3.29916e-8	0.0211992	2.16154e-6
chr10	68736961	68737048	11091334	0	+	0.482759	(0.455,0.49]	chr10	842952	2	CDS	CDS:UTR5:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.74211	4.157645	5.57318	0.00330545	6.11867e-6	0.028478	1.83393e-4
chr20	38952813	38952910	17787118	0	+	0.298969	(0.29,0.33]	chr20	1503191	4	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.23189	4.157595000000001	5.0833	5.87177e-5	4.57622e-5	0.00117909	0.00105479
chr13	95021574	95021674	14109370	0	-	0.42	(0.39,0.42]	chr13	1104293	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.85416	4.1574	5.46064	0.00225069	1.15573e-5	0.021386	3.09736e-4
chr12	53672575	53672614	13341042	0	-	0.538462	(0.53,0.59]	chr12	1049286	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	181	2	3.7675	4.15724	4.54698	2.8511e-8	1.12051e-8	2.08807e-6	8.53925e-7
chr11	32932141	32932241	11899048	0	+	0.42	(0.39,0.42]	chr11	909001	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	76	2	4.03491	4.15718	4.27945	1.51324e-6	2.07257e-7	6.2379e-5	1.04734e-5
chr6	75256201	75256295	7800331	0	-	0.37234	(0.36,0.39]	chr6	597648	1	CDS	CDS:UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	4.08155	4.1570149999999995	4.23248	1.28371e-5	9.85897e-7	3.70041e-4	3.94225e-5
chr6	37044941	37045024	7136236	0	+	0.638554	(0.59,1]	chr6	549924	2	EXON_PSEUDO	EXON_PSEUDO	COX6A1P2	ENSG00000226976.3	ENST00000620597.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	61	2	2.85123	4.156965	5.4627	0.0022846	2.43542e-4	0.0209856	0.00399705
chr3	133807745	133807823	3752382	0	+	0.423077	(0.42,0.455]	chr3	321383	1	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000484684.1:ENST00000678299.1:ENST00000494297.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.91097	4.156865	4.40276	0.0017618	8.75299e-5	0.0180053	0.0016272
chr7	93208678	93208777	8927813	0	-	0.454545	(0.42,0.455]	chr7	681279	2	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.91097	4.156865	4.40276	0.0017618	8.75299e-5	0.0180053	0.0016272
chr12	51240401	51240461	12876201	0	+	0.566667	(0.53,0.59]	chr12	1000602	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000552173.5:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549041.1:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	120	2	4.14313	4.15683	4.17053	7.34074e-7	5.21295e-8	3.41945e-5	3.19969e-6
chr6	26156490	26156582	7101284	0	+	0.597826	(0.59,1]	chr6	542804	1	CDS	CDS:EXON_MRNA	H1-4	ENSG00000168298.7	ENST00000304218.6	protein_coding	protein_coding	protein_coding	protein_coding	7	291	2	3.81102	4.156555	4.50209	3.13265e-6	8.46455e-9	1.04757e-4	7.34531e-7
chr6	33304381	33304466	7669252	0	-	0.670588	(0.59,1]	chr6	587573	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	170	2	3.28373	4.1565	5.02927	2.89873e-5	2.73362e-7	7.24986e-4	1.31947e-5
chr1	44767375	44767473	174075	0	+	0.489796	(0.455,0.49]	chr1	22407	3	UTR3	UTR3:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.65079	4.156445	4.6621	7.84472e-4	3.61776e-4	0.00927662	0.00544764
chr6	150209946	150210046	7483637	0	+	0.39	(0.36,0.39]	chr6	571936	454	INTRON	INTRON	PPP1R14C	ENSG00000198729.5	ENST00000361131.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.99	4.156325000000001	4.32265	6.1616e-5	6.3224e-6	0.00133408	1.88366e-4
chr7	75980338	75980434	8342120	0	+	0.635417	(0.59,1]	chr7	636159	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000426184.1:ENST00000475509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	124	2	3.79127	4.156175	4.52108	2.1425e-5	8.07535e-6	5.12077e-4	2.52239e-4
chr6	26103947	26104047	7101125	0	+	0.57	(0.53,0.59]	chr6	542787	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C3	ENSG00000197061.5	ENST00000377803.4	protein_coding	protein_coding	protein_coding	protein_coding	14	280	2	3.32889	4.156115	4.98334	9.71875e-8	2.85416e-12	5.44683e-6	6.19706e-10
chr19	17568508	17568576	17254678	0	+	0.617647	(0.59,1]	chr19	1424450	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000600474.1:ENST00000601354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.92097	4.156045	5.39112	0.0102634	2.53595e-4	0.0628742	0.00381472
chr6	26250434	26250505	7647262	0	-	0.605634	(0.59,1]	chr6	582573	3	CDS	CDS:EXON_MRNA	H3C7	ENSG00000277775.2	ENST00000618052.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.92097	4.156045	5.39112	0.0102634	2.53595e-4	0.0628742	0.00381472
chr10	75030257	75030356	11125383	0	+	0.454545	(0.42,0.455]	chr10	846540	19	CDS	CDS:EXON_MRNA	KAT6B	ENSG00000156650.14	ENST00000648725.1:ENST00000649006.1:ENST00000649463.1:ENST00000372725.6:ENST00000648892.1:ENST00000372724.6:ENST00000372714.6:ENST00000287239.10:ENST00000372711.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.90921	4.155984999999999	4.40276	0.0121657	0.0017618	0.0701019	0.0180053
chr11	47191270	47191361	12385593	0	-	0.43956	(0.42,0.455]	chr11	956560	2	EXON_PSEUDO	EXON_PSEUDO	RP11-390K5.1	ENSG00000243802.2	ENST00000473109.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.90921	4.155984999999999	4.40276	0.0121657	0.0017618	0.0701019	0.0180053
chr16	58718526	58718607	15967737	0	-	0.481481	(0.455,0.49]	chr16	1281430	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5:ENST00000496461.5:ENST00000568368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.24913	4.155975	5.06282	0.00239443	1.16789e-4	0.0225356	0.0020505
chr19	54173591	54173681	17627652	0	-	0.488889	(0.455,0.49]	chr19	1488015	3	UTR3	UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	3.24913	4.155975	5.06282	0.00239443	1.16789e-4	0.0225356	0.0020505
chr12	124807888	124807927	13600453	0	-	0.435897	(0.42,0.455]	chr12	1071711	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	4.05954	4.1559550000000005	4.25237	0.00617886	2.68635e-7	0.0439741	1.30097e-5
chr3	119437754	119437841	4399133	0	-	0.448276	(0.42,0.455]	chr3	364728	1	CDS	CDS:UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000468545.1:ENST00000491685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.10874	4.15571	5.20268	5.40397e-4	3.59669e-5	0.00688813	8.71318e-4
chr6	107921852	107921909	7882085	0	-	0.333333	(0.33,0.36]	chr6	603432	2	CDS	CDS:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.07736	4.1557	6.23404	0.0442037	2.79464e-8	0.172163	1.8758e-6
chr7	76064801	76064877	8342388	0	+	0.578947	(0.53,0.59]	chr7	636254	1	CDS	CDS:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2:ENST00000424167.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	134	2	3.17316	4.1556750000000005	5.13819	7.8686e-5	1.38627e-10	0.00164157	1.80937e-8
chr5	134200415	134200496	6844142	0	-	0.54321	(0.53,0.59]	chr5	523679	2	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.99191	4.155424999999999	4.31894	5.86351e-5	7.82085e-6	0.00129243	2.24148e-4
chr1	21860176	21860235	891044	0	-	0.644068	(0.59,1]	chr1	92432	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	3.51608	4.15529	4.7945	0.0031766	0.00108676	0.0279054	0.0118659
chr3	48604232	48604294	4168759	0	-	0.629032	(0.59,1]	chr3	349602	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000472438.5:ENST00000412343.5:ENST00000467690.5:ENST00000463708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.51608	4.15529	4.7945	0.0031766	0.00108676	0.0279054	0.0118659
chr2	157300675	157300756	2152537	0	+	0.45679	(0.455,0.49]	chr2	198607	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.76882	4.155279999999999	4.54174	0.00130137	1.00626e-5	0.0136936	3.03291e-4
chr10	95237659	95237747	11629772	0	-	0.454545	(0.42,0.455]	chr10	885722	2	UTR3	UTR3:EXON_MRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7	protein_coding	protein_coding	protein_coding	protein_coding	8	130	2	3.48422	4.155105	4.82599	2.5284e-7	1.27707e-9	1.24119e-5	1.41135e-7
chr11	95836147	95836235	12550043	0	-	0.5	(0.49,0.53]	chr11	973828	1	CDS	CDS:UTR3:EXON_MRNA	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675438.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	4.03034	4.154975	4.27961	4.26396e-5	9.03426e-6	9.97006e-4	2.53429e-4
chr19	49158458	49158555	17369091	0	+	0.525773	(0.49,0.53]	chr19	1442610	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	4.03034	4.154975	4.27961	4.26396e-5	9.03426e-6	9.97006e-4	2.53429e-4
chr20	47212541	47212641	17993135	0	-	0.5	(0.49,0.53]	chr20	1524933	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	4.03034	4.154975	4.27961	4.26396e-5	9.03426e-6	9.97006e-4	2.53429e-4
chr1	196725208	196725297	641336	0	+	0.438202	(0.42,0.455]	chr1	64484	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr1	212043055	212043118	701100	0	+	0.444444	(0.42,0.455]	chr1	71104	2	CDS	CDS:EXON_MRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr1	230250456	230250508	749502	0	+	0.423077	(0.42,0.455]	chr1	76051	1	CDS	CDS:EXON_MRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr11	31539722	31539783	11892232	0	+	0.42623	(0.42,0.455]	chr11	908555	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000638482.1:ENST00000640533.1:ENST00000639570.1:ENST00000640081.1:ENST00000640342.1:ENST00000474374.5:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638508.1:ENST00000638184.1:ENST00000640921.1:ENST00000638376.1:ENST00000638984.1:ENST00000640790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr13	45436390	45436480	13719330	0	+	0.444444	(0.42,0.455]	chr13	1080775	4	EXON_PSEUDO	EXON_PSEUDO	PPIAP25	ENSG00000229303.1	ENST00000420177.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr14	74734075	74734170	14401159	0	+	0.421053	(0.42,0.455]	chr14	1125397	1	CDS	CDS:UTR3:EXON_MRNA	FCF1	ENSG00000119616.11	ENST00000341162.8:ENST00000556814.5:ENST00000553615.5:ENST00000534938.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr15	90266287	90266342	15098916	0	+	0.454545	(0.42,0.455]	chr15	1187923	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-697E2.6:NGRN:RP11-697E2.12	ENSG00000261147.1:ENSG00000182768.9:ENSG00000275674.1	ENST00000561573.1:ENST00000331497.3:ENST00000379095.5:ENST00000622269.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr17	2332168	2332263	16406039	0	-	0.452632	(0.42,0.455]	chr17	1335359	1	CDS	CDS:EXON_MRNA	TSR1	ENSG00000167721.11	ENST00000301364.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr19	12559662	12559755	17236697	0	+	0.44086	(0.42,0.455]	chr19	1420584	2	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr2	63885679	63885770	1850643	0	+	0.362637	(0.36,0.39]	chr2	175541	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UGP2	ENSG00000169764.16	ENST00000394417.7:ENST00000467648.6:ENST00000613823.2:ENST00000487469.5:ENST00000676870.1:ENST00000678298.1:ENST00000677841.1:ENST00000676780.1:ENST00000678951.1:ENST00000678974.1:ENST00000475550.5:ENST00000337130.10:ENST00000445915.6:ENST00000487042.5:ENST00000491621.5:ENST00000679256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.02397	4.15491	5.28585	0.00674398	2.81625e-5	0.0461258	6.42183e-4
chr2	148784667	148784750	2122178	0	+	0.421687	(0.42,0.455]	chr2	197160	1	CDS	CDS:EXON_MRNA	EPC2	ENSG00000135999.12	ENST00000258484.11	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr22	39517048	39517146	18370762	0	+	0.438776	(0.42,0.455]	chr22	1563254	18	UTR3	UTR3:EXON_MRNA	MIEF1	ENSG00000100335.15	ENST00000325301.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr5	41753280	41753379	6557291	0	-	0.444444	(0.42,0.455]	chr5	508136	33	INTRON	INTRON	OXCT1	ENSG00000083720.13	ENST00000196371.10:ENST00000512084.5:ENST00000510634.5:ENST00000509987.1:ENST00000508557.5:ENST00000513081.5:ENST00000514723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr7	6149852	6149942	8113641	0	+	0.422222	(0.42,0.455]	chr7	620353	4	CDS	CDS:UTR3:EXON_MRNA	USP42	ENSG00000106346.11	ENST00000306177.9:ENST00000479544.6:ENST00000521713.1:ENST00000426246.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chrX	48715872	48715972	19063159	0	-	0.45	(0.42,0.455]	chrX	1620484	148	INTRON	INTRON	AF196970.3	ENSG00000232828.1	ENST00000416061.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	4.05954	4.15491	4.25028	0.00617886	0.00406761	0.0439741	0.032143
chr1	161328446	161328497	499759	0	+	0.411765	(0.39,0.42]	chr1	54156	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000515731.1:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	3.52139	4.154885	4.78838	5.10101e-5	1.7675e-7	0.00104581	1.03066e-5
chrX	71296609	71296660	18730853	0	+	0.392157	(0.39,0.42]	chrX	1598424	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	3.67083	4.15483	4.63883	5.68159e-4	1.93844e-5	0.0077844	4.72961e-4
chr6	90513669	90513767	7843482	0	-	0.346939	(0.33,0.36]	chr6	600991	2	UTR3	UTR3:EXON_MRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.97606	4.15475	5.33344	0.00871774	1.82386e-5	0.0558165	4.52248e-4
chr18	9536827	9536926	16753989	0	+	0.343434	(0.33,0.36]	chr18	1381612	10	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	3.66756	4.15468	4.6418	6.89834e-7	1.2855e-7	3.24522e-5	6.93824e-6
chrX	72064465	72064564	18735309	0	+	0.50505	(0.49,0.53]	chrX	1599017	197	INTRON	INTRON	NHSL2	ENSG00000204131.9	ENST00000633930.1:ENST00000631833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	4.14824	4.15465	4.16106	2.04708e-5	4.59826e-8	5.45523e-4	2.86422e-6
chrX	70134620	70134718	18726606	0	+	0.459184	(0.455,0.49]	chrX	1597507	2	CDS	CDS:EXON_MRNA	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.50904	4.1545250000000005	5.80001	0.0310515	1.35407e-6	0.131262	5.16241e-5
chr11	123061119	123061144	12637005	0	-	0.44	(0.42,0.455]	chr11	980728	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000227378.7:ENST00000526110.5:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000534567.5:ENST00000527387.5:ENST00000532182.5:ENST00000524590.5:ENST00000530391.1:ENST00000531063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	64	2	4.02236	4.15393	4.2855	8.02587e-6	1.61783e-6	2.50919e-4	5.98677e-5
chr7	103310314	103310394	8441109	0	+	0.4375	(0.42,0.455]	chr7	645034	1	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	2.53312	4.15382	5.77452	2.86485e-4	8.63204e-7	0.00421942	3.91474e-5
chr1	2256157	2256257	6858	0	+	0.48	(0.455,0.49]	chr1	1639	77	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr1	81504330	81504426	322534	0	+	0.46875	(0.455,0.49]	chr1	32281	10	INTRON	INTRON	ADGRL2	ENSG00000117114.20	ENST00000674378.1:ENST00000674386.1:ENST00000473719.5:ENST00000370728.5:ENST00000370730.5:ENST00000370721.5:ENST00000370727.5:ENST00000370725.5:ENST00000370723.5:ENST00000469377.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr1	155236394	155236469	1307069	0	-	0.466667	(0.455,0.49]	chr1	131991	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GBA	ENSG00000177628.16	ENST00000327247.9:ENST00000368373.8:ENST00000427500.7:ENST00000428024.3:ENST00000478472.1:ENST00000484489.5:ENST00000491081.5:ENST00000497670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr11	17372330	17372412	11827950	0	+	0.47561	(0.455,0.49]	chr11	905451	5	CDS	CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr11	134152747	134152845	12674888	0	-	0.489796	(0.455,0.49]	chr11	983301	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000526787.2:ENST00000534532.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr13	40811560	40811660	13702996	0	+	0.47	(0.455,0.49]	chr13	1079533	8	UTR3	UTR3:EXON_MRNA	SLC25A15	ENSG00000102743.15	ENST00000338625.9	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr14	94079219	94079317	14775432	0	-	0.459184	(0.455,0.49]	chr14	1157311	3	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr2	134954287	134954383	2079654	0	+	0.458333	(0.455,0.49]	chr2	195067	12	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000452521.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr3	44997169	44997252	3446155	0	+	0.46988	(0.455,0.49]	chr3	300134	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000467846.5:ENST00000491476.5:ENST00000481405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chr4	102668962	102669049	5562944	0	-	0.482759	(0.455,0.49]	chr4	444231	1	CDS	CDS:UTR3:EXON_MRNA	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.10535	4.15362	4.20189	0.0064531	0.00397662	0.0450905	0.0322851
chrX	66208114	66208180	18717711	0	+	0.454545	(0.42,0.455]	chrX	1597034	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	3.52659	4.15357	4.78055	6.87022e-4	2.69619e-9	0.00876781	2.5064e-7
chr11	4109643	4109703	11774166	0	+	0.383333	(0.36,0.39]	chr11	900961	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.18642	4.15348	5.12054	0.00359152	7.15553e-5	0.0302391	0.00137393
chr8	105700533	105700633	9546353	0	+	0.37	(0.36,0.39]	chr8	724777	92	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000511341.6:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.18642	4.15348	5.12054	0.00359152	7.15553e-5	0.0302391	0.00137393
chr1	109631152	109631251	399612	0	+	0.555556	(0.53,0.59]	chr1	39002	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AMPD2	ENSG00000116337.20	ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7:ENST00000528454.5:ENST00000681121.1:ENST00000524975.2:ENST00000654851.1:ENST00000528958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr11	64804149	64804241	12419572	0	-	0.554348	(0.53,0.59]	chr11	963063	8	UTR3	UTR3:EXON_MRNA	MEN1	ENSG00000133895.18	ENST00000377316.6:ENST00000315422.9:ENST00000377313.6:ENST00000312049.11:ENST00000377326.7:ENST00000377321.5:ENST00000450708.7:ENST00000478548.3:ENST00000672304.1:ENST00000394376.6:ENST00000440873.6:ENST00000671939.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr12	8637012	8637111	12722328	0	+	0.555556	(0.53,0.59]	chr12	988470	5	EXON_PSEUDO	EXON_PSEUDO	HADHAP2	ENSG00000255967.1	ENST00000540341.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr12	48939046	48939108	13322630	0	-	0.532258	(0.53,0.59]	chr12	1045240	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9:ENST00000485410.5:ENST00000447318.6:ENST00000541959.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr12	122059361	122059461	13122403	0	+	0.57	(0.53,0.59]	chr12	1024749	3	UTR3	UTR3:EXON_MRNA	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr16	3142415	3142512	15497022	0	+	0.587629	(0.53,0.59]	chr16	1228452	12	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF213	ENSG00000085644.14	ENST00000574902.5:ENST00000396878.8:ENST00000574928.5:ENST00000416391.6:ENST00000576863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr17	44385011	44385076	16558145	0	-	0.569231	(0.53,0.59]	chr17	1359495	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000592226.5:ENST00000591990.5:ENST00000589645.5:ENST00000592253.5:ENST00000592075.5:ENST00000592944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr19	35010639	35010719	17302623	0	+	0.575	(0.53,0.59]	chr19	1430297	1	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000411896.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr5	151765944	151766031	6920068	0	-	0.551724	(0.53,0.59]	chr5	530227	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	ATOX1:RPLP1P6	ENSG00000177556.12:ENSG00000213433.5	ENST00000524142.5:ENST00000518134.1:ENST00000473923.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:processed_transcript:transcribed_processed_pseudogene	0	18	2	3.99819	4.152975	4.30776	0.0111308	0.00407289	0.0665375	0.0324137
chr1	1752214	1752312	829353	0	-	0.55102	(0.53,0.59]	chr1	82839	11	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr1	41037451	41037541	956648	0	-	0.533333	(0.53,0.59]	chr1	101246	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCMH1	ENSG00000010803.16	ENST00000397171.6:ENST00000361191.9:ENST00000361705.7:ENST00000402904.6:ENST00000397174.6:ENST00000372597.5:ENST00000372596.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000472037.5:ENST00000456518.3:ENST00000460215.5:ENST00000498793.5:ENST00000489421.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr13	26254103	26254192	13654696	0	+	0.573034	(0.53,0.59]	chr13	1076208	1	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr16	29383995	29384093	15909055	0	-	0.540816	(0.53,0.59]	chr16	1274086	26	CDS	CDS:EXON_MRNA	NPIPB11	ENSG00000254206.5	ENST00000524087.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr19	309808	309904	17414799	0	-	0.572917	(0.53,0.59]	chr19	1451466	5	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr19	3605341	3605439	17427984	0	-	0.530612	(0.53,0.59]	chr19	1454174	43	INTRON	INTRON	TBXA2R	ENSG00000006638.13	ENST00000375190.10:ENST00000411851.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr2	62222419	62222518	1845097	0	+	0.585859	(0.53,0.59]	chr2	175154	2	CDS	CDS:EXON_MRNA	B3GNT2	ENSG00000170340.11	ENST00000301998.5:ENST00000405767.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr2	85558522	85558605	2770780	0	-	0.542169	(0.53,0.59]	chr2	245839	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GGCX	ENSG00000115486.12	ENST00000233838.9:ENST00000465637.5:ENST00000430215.7:ENST00000423570.5:ENST00000421496.5:ENST00000428479.3:ENST00000481541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr2	218841691	218841784	2391663	0	+	0.548387	(0.53,0.59]	chr2	215273	2	EXON_PSEUDO	EXON_PSEUDO	RPL23AP31	ENSG00000232625.1	ENST00000456160.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr3	51933505	51933599	4180917	0	-	0.585106	(0.53,0.59]	chr3	352300	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RRP9	ENSG00000114767.7	ENST00000232888.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr7	6424751	6424813	8664279	0	-	0.564516	(0.53,0.59]	chr7	662768	1	CDS	CDS:UTR3:EXON_MRNA	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr8	21999090	21999161	9222067	0	+	0.535211	(0.53,0.59]	chr8	705032	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000517551.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr8	140659367	140659465	10133245	0	-	0.55102	(0.53,0.59]	chr8	761074	16	UTR3	UTR3:EXON_MRNA	PTK2	ENSG00000169398.19	ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000517712.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chrX	150776173	150776233	19265212	0	-	0.533333	(0.53,0.59]	chrX	1636643	1	CDS	CDS:UTR3:EXON_MRNA	CD99L2	ENSG00000102181.21	ENST00000370377.8:ENST00000346693.8:ENST00000613030.4:ENST00000437787.6:ENST00000355149.8:ENST00000466436.5:ENST00000634795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	4.00393	4.15294	4.30195	0.0108084	0.00421989	0.064368	0.0328662
chr3	33143039	33143138	3397822	0	+	0.363636	(0.36,0.39]	chr3	295508	7	UTR3	UTR3:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.53529	4.1528849999999995	4.77048	6.0978e-5	2.24861e-7	0.00132411	1.11991e-5
chr18	9954309	9954407	16756133	0	+	0.377551	(0.36,0.39]	chr18	1381801	2	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	302	2	3.64854	4.152735	4.65693	4.37252e-10	1e-12	5.54188e-8	2.25522e-10
chr11	118523956	118524055	12159172	0	+	0.484848	(0.455,0.49]	chr11	937154	19	UTR3	UTR3:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000534358.8:ENST00000527839.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.92901	4.15255	5.37609	0.00141135	2.05373e-5	0.0151901	4.97369e-4
chr5	14797418	14797516	6463515	0	-	0.418367	(0.39,0.42]	chr5	503014	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ANKH:RBBP4P1	ENSG00000154122.14:ENSG00000249485.1	ENST00000284268.8:ENST00000513115.1:ENST00000502424.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	2	37	2	2.48908	4.152495	5.81591	0.0101318	1.11558e-6	0.0626311	4.4003e-5
chr11	118396835	118396934	12157858	0	+	0.353535	(0.33,0.36]	chr11	936937	5	UTR3	UTR3:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.473	4.15249	4.83198	8.77304e-4	1.88689e-4	0.0101202	0.0032588
chr3	160947747	160947847	3855135	0	+	0.34	(0.33,0.36]	chr3	327546	76	INTRON	INTRON	PPM1L	ENSG00000163590.14	ENST00000497343.5:ENST00000498165.6:ENST00000464260.5:ENST00000295839.9:ENST00000480117.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.473	4.15249	4.83198	8.77304e-4	1.88689e-4	0.0101202	0.0032588
chr17	18572891	18572961	16151618	0	+	0.671429	(0.59,1]	chr17	1302337	3	EXON_PSEUDO	EXON_PSEUDO	AC107983.4	ENSG00000227077.3	ENST00000442562.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	86	2	2.70328	4.152465	5.60165	6.00007e-4	1.30928e-4	0.00750723	0.00243846
chr18	56602828	56602927	17136168	0	-	0.323232	(0.29,0.33]	chr18	1406915	58	UTR3	UTR3:EXON_MRNA	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000589931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.92065	4.152315	5.38398	0.0117842	1.15499e-5	0.0686664	3.09736e-4
chr7	108574151	108574251	8457672	0	+	0.33	(0.29,0.33]	chr7	646360	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DNAJB9	ENSG00000128590.5	ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.92065	4.152315	5.38398	0.0117842	1.15499e-5	0.0686664	3.09736e-4
chr3	33051882	33051943	4111505	0	-	0.540984	(0.53,0.59]	chr3	343493	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.515	4.152135	5.78927	0.0292633	2.83401e-6	0.129773	9.62519e-5
chr1	235111285	235111382	1560085	0	-	0.453608	(0.42,0.455]	chr1	156012	21	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	8	131	2	3.58044	4.15208	4.72372	1.08895e-7	3.47065e-9	6.00753e-6	3.37803e-7
chr5	141528452	141528517	6875171	0	-	0.538462	(0.53,0.59]	chr5	526394	1	CDS	CDS:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.74542	4.152010000000001	4.5586	0.00161229	2.30148e-4	0.0169168	0.00352524
chr20	62945505	62945604	17863437	0	+	0.333333	(0.33,0.36]	chr20	1510468	7	UTR3	UTR3:EXON_MRNA	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.3227	4.151875	4.98105	0.00222616	1.32493e-4	0.0211992	0.00227943
chr5	141592443	141592543	6875853	0	-	0.35	(0.33,0.36]	chr5	526526	38	INTRON	INTRON	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.3227	4.151875	4.98105	0.00222616	1.32493e-4	0.0211992	0.00227943
chr11	126263621	126263719	12645140	0	-	0.581633	(0.53,0.59]	chr11	981826	8	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1	protein_coding	protein_coding	protein_coding	protein_coding	10	227	2	4.05625	4.151870000000001	4.24749	1.33257e-7	1.09778e-10	8.01671e-6	1.4708e-8
chr1	21839370	21839460	890795	0	-	0.633333	(0.59,1]	chr1	92298	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	148	2	3.49172	4.151835	4.81195	2.24457e-5	1.42586e-6	5.34605e-4	5.92213e-5
chr7	100092795	100092863	8949612	0	-	0.485294	(0.455,0.49]	chr7	683496	2	UTR3	UTR3:EXON_MRNA	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	3.66739	4.151730000000001	4.63607	2.02214e-5	6.94376e-7	5.39633e-4	2.92826e-5
chr7	50334441	50334541	8278464	0	+	0.38	(0.36,0.39]	chr7	630699	56	INTRON	INTRON	IKZF1	ENSG00000185811.19	ENST00000642219.1:ENST00000645066.1:ENST00000646110.1:ENST00000331340.8:ENST00000413698.5:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000612658.4:ENST00000439701.2:ENST00000438033.5:ENST00000492782.6:ENST00000462201.1:ENST00000471793.1:ENST00000426121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.0992	4.151255	5.20331	5.86576e-4	2.53222e-5	0.00742331	6.51851e-4
chr21	44805715	44805814	18277267	0	-	0.434343	(0.42,0.455]	chr21	1550219	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	108	2	3.77725	4.151215	4.52518	2.05982e-7	2.23906e-8	1.04286e-5	1.68827e-6
chr15	88905756	88905828	15434352	0	-	0.597222	(0.59,1]	chr15	1220407	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000542878.5:ENST00000558029.5:ENST00000613965.1:ENST00000559259.1:ENST00000559997.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	204	2	3.96358	4.150945	4.33831	9.20327e-6	8.71344e-8	2.83402e-4	4.96645e-6
chr16	70568424	70568495	15730139	0	+	0.549296	(0.53,0.59]	chr16	1253008	3	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.43342	4.150824999999999	4.86823	4.35895e-4	8.93729e-5	0.00623608	0.00165837
chr1	19114879	19114949	876026	0	-	0.471429	(0.455,0.49]	chr1	90028	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.97397	4.15078	5.32759	8.30118e-5	1.92345e-5	0.00156827	5.18397e-4
chr12	67306198	67306298	12934068	0	+	0.38	(0.36,0.39]	chr12	1008094	12	CDS	CDS:EXON_MRNA:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	4.0322	4.1506799999999995	4.26916	0.00588589	9.09682e-6	0.0427941	2.53877e-4
chr1	156009243	156009342	1313061	0	-	0.525253	(0.49,0.53]	chr1	133080	3	UTR3	UTR3:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	4.12263	4.150485	4.17834	0.00591451	1.74561e-5	0.0427941	4.38078e-4
chr1	88983044	88983142	1156833	0	-	0.438776	(0.42,0.455]	chr1	114090	4	CDS	CDS:EXON_MRNA:INTRON	KYAT3:RBMXL1	ENSG00000137944.18:ENSG00000213516.10	ENST00000370491.7:ENST00000446900.6:ENST00000260508.9:ENST00000370486.1:ENST00000321792.5:ENST00000652648.1:ENST00000399794.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.57051	4.150435	5.73036	0.0265466	2.37045e-6	0.120071	8.28831e-5
chr2	38765916	38766015	1748925	0	+	0.434343	(0.42,0.455]	chr2	170060	8	INTRON	INTRON	GEMIN6	ENSG00000152147.11	ENST00000409011.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.57051	4.150435	5.73036	0.0265466	2.37045e-6	0.120071	8.28831e-5
chr17	64754576	64754654	16641102	0	-	0.487179	(0.455,0.49]	chr17	1368672	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ARHGAP27P1-BPTFP1-KPNA2P3:KPNA2P3	ENSG00000215769.8:ENSG00000266820.1	ENST00000578492.5:ENST00000584190.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	29	2	2.9967	4.150305	5.30391	0.00650423	3.12735e-5	0.0454205	6.97306e-4
chr2	70986433	70986531	2728034	0	-	0.469388	(0.455,0.49]	chr2	243102	6	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.9967	4.150305	5.30391	0.00650423	3.12735e-5	0.0454205	6.97306e-4
chr3	39359134	39359233	3423600	0	+	0.474747	(0.455,0.49]	chr3	297918	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P24	ENSG00000223668.1	ENST00000451469.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	29	2	2.9967	4.150305	5.30391	0.00650423	3.12735e-5	0.0454205	6.97306e-4
chr7	65967730	65967818	8834444	0	-	0.454545	(0.42,0.455]	chr7	674572	1	CDS	CDS:UTR3:EXON_MRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000461622.1:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	3.31161	4.1503049999999995	4.989	0.00186138	4.29924e-8	0.018635	2.69981e-6
chr15	80138201	80138297	15045410	0	+	0.34375	(0.33,0.36]	chr15	1183661	7	UTR3	UTR3:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000559157.5:ENST00000261749.11:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	4.1284	4.1498100000000004	4.17122	0.00407303	1.72402e-5	0.0324137	4.33531e-4
chr19	54200909	54200961	17390387	0	+	0.557692	(0.53,0.59]	chr19	1447197	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.56002	4.149795	5.73957	0.00634904	3.90343e-6	0.0446708	1.26306e-4
chr3	69104463	69104536	3545799	0	+	0.39726	(0.39,0.42]	chr3	308506	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ARL6IP5	ENSG00000144746.7	ENST00000273258.4:ENST00000484921.1:ENST00000478935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.80623	4.149735	4.49324	0.00108192	7.67155e-6	0.0124943	2.20857e-4
chr6	117998874	117998974	7354837	0	+	0.49	(0.455,0.49]	chr6	565160	906	INTRON	INTRON	SLC35F1	ENSG00000196376.11	ENST00000360388.9	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.37741	4.14972	4.92203	1.27402e-4	7.22227e-8	0.00241206	4.22134e-6
chr7	66953241	66953305	8307686	0	+	0.359375	(0.33,0.36]	chr7	633392	1	CDS	CDS:UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	4.0049	4.149645	4.29439	9.429e-6	1.77926e-6	2.89287e-4	6.4851e-5
chr8	30352356	30352452	9253456	0	+	0.625	(0.59,1]	chr8	708964	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	62	2	2.58269	4.149645	5.7166	0.0067313	5.56053e-5	0.0461258	0.0011271
chr3	33051757	33051798	4111502	0	-	0.390244	(0.39,0.42]	chr3	343490	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	3.40647	4.149325	4.89218	1.6518e-4	1.67145e-5	0.0029267300000000002	4.22716e-4
chr2	26191161	26191249	2565637	0	-	0.568182	(0.53,0.59]	chr2	230525	7	UTR3	UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	65	2	2.65777	4.14925	5.64073	2.52562e-4	7.00135e-6	0.00380854	2.25852e-4
chr5	132210363	132210443	6833638	0	-	0.575	(0.53,0.59]	chr5	522722	2	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	3.8061	4.1492000000000004	4.4923	8.37944e-6	2.39218e-6	2.38248e-4	9.1799e-5
chr4	108667635	108667727	5038569	0	+	0.402174	(0.39,0.42]	chr4	409875	5	UTR3	UTR3:EXON_MRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	3.45983	4.149135	4.83844	8.68166e-5	1.42748e-9	0.00177086	1.43979e-7
chr11	67586388	67586428	11996994	0	+	0.525	(0.49,0.53]	chr11	923178	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1:ENST00000495996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	217	2	3.43822	4.1488949999999996	4.85957	8.45016e-8	4.80072e-12	4.83455e-6	9.88895e-10
chrX	20154698	20154798	18985625	0	-	0.39	(0.36,0.39]	chrX	1616690	49	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.69835	4.148525	4.5987	9.0208e-4	3.2708e-4	0.0102618	0.00502339
chr12	113390950	113391047	13101764	0	+	0.371134	(0.36,0.39]	chr12	1022448	25	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	13	181	2	3.53494	4.1484950000000005	4.76205	1.40301e-8	1.16991e-11	1.1363e-6	1.99273e-9
chr1	27526682	27526782	113278	0	+	0.49	(0.455,0.49]	chr1	13755	4	INTRON	INTRON	RP1-159A19.4	ENSG00000237429.1	ENST00000443579.1	lncRNA	lncRNA	lncRNA	lncRNA	1	30	2	2.85172	4.14827	5.44482	0.010864	1.36044e-5	0.0643837	3.54469e-4
chrX	49600723	49600783	18695308	0	+	0.533333	(0.53,0.59]	chrX	1595073	1	CDS	CDS:EXON_MRNA	GAGE1	ENSG00000205777.18	ENST00000381709.6:ENST00000381700.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	3.70393	4.148185	4.59244	1.64739e-5	1.19382e-6	4.57148e-4	4.64223e-5
chr2	58159593	58159693	1830036	0	+	0.32	(0.29,0.33]	chr2	174308	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.48001	4.148095	4.81618	0.00126219	2.74489e-4	0.013837	0.00406677
chr5	43297083	43297166	6560236	0	-	0.385542	(0.36,0.39]	chr5	508365	2	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	3.06725	4.147845	5.22844	2.06648e-4	4.38129e-9	0.00350209	3.79596e-7
chr1	108601186	108601284	394585	0	+	0.306122	(0.29,0.33]	chr1	38012	1	INTRON	INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	4.05177	4.14782	4.24387	0.00263476	3.72769e-5	0.0239118	8.08834e-4
chr1	53809694	53809746	1025995	0	-	0.403846	(0.39,0.42]	chr1	106412	1	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.9641	4.1477	4.3313	0.00209984	6.346e-5	0.0204266	0.00124725
chr8	99887504	99887604	9970690	0	-	0.38	(0.36,0.39]	chr8	752092	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5:ENST00000518171.5:ENST00000523016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	3.51283	4.147685	4.78254	1.73355e-6	1.93842e-7	6.35767e-5	1.10775e-5
chr7	105110539	105110602	8449859	0	+	0.47619	(0.455,0.49]	chr7	645356	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8:ENST00000478079.1:ENST00000473063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.65545	4.147615	4.63978	6.94032e-4	3.50134e-4	0.00876781	0.0049086
chr10	74138279	74138379	11575988	0	-	0.41	(0.39,0.42]	chr10	881711	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1:ENST00000487653.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.70591	4.14747	5.58903	0.0185716	5.14263e-6	0.0932453	1.58468e-4
chr16	70262468	70262524	15996983	0	-	0.517857	(0.49,0.53]	chr16	1284633	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000566969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	53	2	2.83191	4.147325	5.46274	1.99461e-4	1.13094e-5	0.00316009	3.3464e-4
chr13	91350750	91350821	13817785	0	+	0.450704	(0.42,0.455]	chr13	1086068	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	MIR17HG:MIR17:MIR18A:MIR19A:MIR20A:MIR19B1:MIR92A1	ENSG00000215417.13:ENSG00000284536.1:ENSG00000283815.1:ENSG00000284204.1:ENSG00000283762.1:ENSG00000284375.1:ENSG00000283705.1	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000385012.1:ENST00000362310.3:ENST00000384878.1:ENST00000362279.1:ENST00000384829.1:ENST00000385233.3	miRNA	miRNA	miRNA:lncRNA	miRNA:retained_intron:lncRNA:primary_miRNA	3	78	2	3.62315	4.147175	4.6712	4.234e-4	7.36673e-9	0.00613535	5.97256e-7
chr4	55369991	55370091	4842992	0	+	0.4	(0.39,0.42]	chr4	398902	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SRD5A3:RP11-177J6.2	ENSG00000128039.13:ENSG00000288695.1	ENST00000679836.1:ENST00000679707.1:ENST00000264228.9:ENST00000679351.1:ENST00000680700.1:ENST00000505210.1:ENST00000678717.1:ENST00000677177.2:ENST00000677217.1:ENST00000677930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.0503	4.146995	5.24369	0.00570576	4.15285e-5	0.0424438	8.8376e-4
chr12	108678274	108678334	13530821	0	-	0.55	(0.53,0.59]	chr12	1063984	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.65894	4.14684	5.63474	0.0193255	7.53339e-6	0.0943643	2.17987e-4
chr3	33093120	33093214	4111934	0	-	0.56383	(0.53,0.59]	chr3	343556	3	CDS	CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.65894	4.14684	5.63474	0.0193255	7.53339e-6	0.0943643	2.17987e-4
chr19	53224244	53224334	17625389	0	-	0.444444	(0.42,0.455]	chr19	1487487	4	EXON_PSEUDO	EXON_PSEUDO	NDUFV2P1	ENSG00000267809.1	ENST00000596415.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	3.8515	4.1465	4.4415	0.0119089	2.94164e-6	0.0686664	9.91141e-5
chr22	37877772	37877872	18364682	0	+	0.48	(0.455,0.49]	chr22	1562205	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	70	2	2.3919	4.146215	5.90053	2.69792e-4	4.02654e-7	0.00402504	2.05231e-5
chr3	39410835	39410917	3423824	0	+	0.621951	(0.59,1]	chr3	298005	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	224	2	3.8694	4.14619	4.42298	5.67708e-7	5.25184e-7	2.57927e-5	2.46869e-5
chr5	178056144	178056242	6410849	0	+	0.428571	(0.42,0.455]	chr5	498581	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	FAM153CP:RP11-889L3.1	ENSG00000204677.13:ENSG00000218227.3	ENST00000652765.1:ENST00000651508.1:ENST00000652706.2:ENST00000511189.3:ENST00000652372.1:ENST00000651413.2:ENST00000651496.2:ENST00000652760.2:ENST00000651248.2:ENST00000662167.1:ENST00000652262.2:ENST00000669380.1:ENST00000652571.2:ENST00000651447.2:ENST00000651969.2:ENST00000668044.1:ENST00000663123.1:ENST00000651697.2:ENST00000652167.1:ENST00000652694.2:ENST00000663505.1:ENST00000667131.1:ENST00000651398.2:ENST00000511511.6:ENST00000506096.6:ENST00000651406.1:ENST00000652057.1:ENST00000652464.2:ENST00000511819.6:ENST00000477964.1	lncRNA	retained_intron	lncRNA:transcribed_processed_pseudogene	retained_intron:lncRNA:transcribed_processed_pseudogene	4	89	2	3.95538	4.146084999999999	4.33679	6.68846e-5	9.2626e-9	0.00142352	7.26845e-7
chr6	37174186	37174282	7136295	0	+	0.53125	(0.53,0.59]	chr6	549953	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000468243.5:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	814	2	3.87757	4.146015	4.41446	9.87185e-11	1e-12	1.48771e-8	2.25522e-10
chr11	49742838	49742938	11945702	0	+	0.5	(0.49,0.53]	chr11	913718	1656	INTRON	INTRON	RP11-707M1.1	ENSG00000205035.8	ENST00000534201.5:ENST00000527477.1:ENST00000530858.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	216	4421	2	3.13152	4.145665	5.15981	3.73372e-10	1e-12	4.84694e-8	2.25522e-10
chr8	22138993	22139061	9750687	0	-	0.691176	(0.59,1]	chr8	737170	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2:ENST00000518664.5:ENST00000519074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	3.09455	4.145515	5.19648	7.92671e-4	7.35336e-4	0.00933379	0.00921643
chr12	6978336	6978436	13188951	0	-	0.55	(0.53,0.59]	chr12	1032834	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5:ENST00000535021.5:ENST00000540090.5:ENST00000543794.5:ENST00000536797.5:ENST00000537179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	3.98115	4.144455	4.30776	0.00407289	6.28226e-5	0.0324137	0.00124286
chr22	42086182	42086282	18520835	0	-	0.48	(0.455,0.49]	chr22	1581543	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFA6	ENSG00000184983.11	ENST00000498737.8:ENST00000617763.1:ENST00000470753.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	4.08686	4.144375	4.20189	0.00397662	9.7689e-7	0.0322851	3.91836e-5
chr3	100748158	100748250	3637798	0	+	0.565217	(0.53,0.59]	chr3	311886	1	CDS	CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	4.04528	4.14437	4.24346	4.28524e-5	3.43541e-7	9.98851e-4	1.60752e-5
chr17	81845647	81845742	16709513	0	-	0.515789	(0.49,0.53]	chr17	1377681	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	633	2	2.92163	4.14431	5.36699	3.83313e-6	1e-12	1.35839e-4	2.25522e-10
chr11	87322231	87322331	12054882	0	+	0.37	(0.36,0.39]	chr11	929334	10	UTR3	UTR3:EXON_MRNA	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000531643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.02118	4.14421	6.26724	0.0251625	2.79819e-8	0.117055	1.8758e-6
chr22	19064847	19064920	18430322	0	-	0.630137	(0.59,1]	chr22	1570382	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000473832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	93	2	3.99997	4.1442	4.28843	1.30803e-4	2.52144e-5	0.00243846	5.85193e-4
chr2	32197343	32197392	1711694	0	+	0.489796	(0.455,0.49]	chr2	167895	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000440718.5:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.92463	4.14385	4.36307	0.0113417	0.00218641	0.0665375	0.0208941
chr22	44155009	44155108	18390758	0	+	0.464646	(0.455,0.49]	chr22	1566016	15	INTRON	INTRON	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.92463	4.14385	4.36307	0.0113417	0.00218641	0.0665375	0.0208941
chr5	72183742	72183825	6027628	0	+	0.46988	(0.455,0.49]	chr5	472542	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2:ENST00000504492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.92463	4.14385	4.36307	0.0113417	0.00218641	0.0665375	0.0208941
chr9	91409940	91410039	10731273	0	-	0.464646	(0.455,0.49]	chr9	811933	6	CDS	CDS:EXON_MRNA	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.92463	4.14385	4.36307	0.0113417	0.00218641	0.0665375	0.0208941
chr2	128133200	128133260	2059906	0	+	0.416667	(0.39,0.42]	chr2	193236	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.51636	4.1437100000000004	4.77106	6.99837e-4	3.03764e-4	0.00846751	0.00472028
chr5	151800814	151800869	6299729	0	+	0.418182	(0.39,0.42]	chr5	491943	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1:ENST00000677608.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	4.1206	4.143615	4.16663	0.00597537	1.84729e-5	0.0428562	5.02409e-4
chr20	483260	483360	17871446	0	-	0.33	(0.29,0.33]	chr20	1511949	46	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	3.33708	4.143565	4.95005	9.78718e-5	2.90171e-5	0.0019344	6.60417e-4
chr8	98045456	98045546	9962864	0	-	0.633333	(0.59,1]	chr8	751720	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1:ENST00000520998.1:ENST00000521112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	84	3000	2	4.05763	4.14353	4.22943	1.76732e-10	1.12483e-11	2.49761e-8	1.92842e-9
chr7	6401947	6402027	8114056	0	+	0.5125	(0.49,0.53]	chr7	620424	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000473564.1:ENST00000495499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	3.04107	4.14343	5.24579	0.00533879	4.073e-5	0.0392268	9.64741e-4
chr1	23321595	23321663	894826	0	-	0.455882	(0.455,0.49]	chr1	92844	2	CDS	CDS:EXON_MRNA:INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr1	23845714	23845814	897887	0	-	0.49	(0.455,0.49]	chr1	93304	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FUCA1	ENSG00000179163.12	ENST00000374479.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr1	40422001	40422101	154035	0	+	0.46	(0.455,0.49]	chr1	19280	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr1	46516118	46516216	179955	0	+	0.459184	(0.455,0.49]	chr1	23420	38	UTR3	UTR3:EXON_MRNA	DMBX1	ENSG00000197587.11	ENST00000360032.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr1	149584095	149584193	463617	0	+	0.479592	(0.455,0.49]	chr1	46654	2	CDS	CDS:EXON_MRNA	PPIAL4C	ENSG00000263464.2	ENST00000585245.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr11	62807468	62807568	12411175	0	-	0.46	(0.455,0.49]	chr11	961702	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	STX5	ENSG00000162236.13	ENST00000294179.8:ENST00000377897.8:ENST00000394690.5:ENST00000492066.5:ENST00000491231.5:ENST00000677401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr14	81506157	81506241	14733045	0	-	0.47619	(0.455,0.49]	chr14	1154233	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000555824.5:ENST00000557372.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr6	158637127	158637205	8043788	0	-	0.474359	(0.455,0.49]	chr6	614884	1	CDS	CDS:EXON_MRNA	DYNLT1	ENSG00000146425.11	ENST00000367089.8:ENST00000367088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr7	93999231	93999294	8929980	0	-	0.47619	(0.455,0.49]	chr7	681470	2	CDS	CDS:EXON_MRNA	BET1	ENSG00000105829.13	ENST00000357520.8:ENST00000650276.1:ENST00000222547.8:ENST00000433727.5:ENST00000457139.5:ENST00000425626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.0204	4.143165	4.26593	0.00736097	0.00372962	0.0490627	0.0302984
chr3	13319229	13319325	4046215	0	-	0.552083	(0.53,0.59]	chr3	339520	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	8	182	2	3.39937	4.143135	4.8869	1.5212e-6	7.25956e-11	6.26453e-5	1.0254e-8
chr1	161171730	161171815	1332758	0	-	0.494118	(0.49,0.53]	chr1	136717	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	B4GALT3	ENSG00000158850.15	ENST00000319769.10:ENST00000622395.4:ENST00000470882.5:ENST00000367998.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.60653	4.1431249999999995	4.67972	6.94757e-4	4.50981e-4	0.00876781	0.00605268
chr4	87893126	87893224	4942247	0	+	0.520408	(0.49,0.53]	chr4	406011	14	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.60653	4.1431249999999995	4.67972	6.94757e-4	4.50981e-4	0.00876781	0.00605268
chr9	95445633	95445731	10747164	0	-	0.44898	(0.42,0.455]	chr9	813419	28	UTR3	UTR3:EXON_MRNA	PTCH1	ENSG00000185920.17	ENST00000437951.6:ENST00000331920.11:ENST00000430669.6:ENST00000375290.6:ENST00000546744.5:ENST00000429896.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	3.17397	4.1430750000000005	5.11218	0.0031821	6.01815e-5	0.0267094	0.00130886
chr19	1496284	1496368	17193655	0	+	0.630952	(0.59,1]	chr19	1412289	1	CDS	CDS:EXON_MRNA	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.65509	4.143075	4.63106	0.00537945	5.95213e-4	0.0406564	0.00746384
chr14	35292476	35292552	14225375	0	+	0.552632	(0.53,0.59]	chr14	1113811	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000627895.2:ENST00000628955.1:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000556167.1:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.62204	4.14276	4.66348	0.00107799	4.3021e-4	0.0118238	0.00620274
chr2	101269045	101269145	1957424	0	+	0.3	(0.29,0.33]	chr2	185966	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.33544	4.142745	4.95005	0.0016889	9.78718e-5	0.0165476	0.0019344
chr17	22524061	22524136	16169258	0	+	0.506667	(0.49,0.53]	chr17	1304368	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	9	180	2	3.59935	4.142645	4.68594	2.47671e-7	3.85861e-11	1.36676e-5	5.83529e-9
chr7	852608	852667	8093689	0	+	0.423729	(0.42,0.455]	chr7	618435	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000450881.5:ENST00000429178.5:ENST00000433212.5:ENST00000464442.5:ENST00000480475.5:ENST00000488628.1:ENST00000463848.1:ENST00000457861.1:ENST00000459810.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.23839	4.142595	5.0468	2.92986e-4	1.33918e-4	0.00464297	0.00229039
chr6	28643428	28643527	7106916	0	+	0.515152	(0.49,0.53]	chr6	543837	40	INTRON	INTRON	RP11-373N24.3	ENSG00000287279.1	ENST00000653211.1	lncRNA	lncRNA	lncRNA	lncRNA	232	4062	2	4.01546	4.1424	4.26934	1e-12	1e-12	2.46312e-10	2.25522e-10
chr3	13319906	13319979	4046223	0	-	0.575342	(0.53,0.59]	chr3	339524	3	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	3.66389	4.142305	4.62072	2.13854e-5	1.55043e-8	5.67072e-4	1.13092e-6
chr12	48936796	48936894	13322607	0	-	0.408163	(0.39,0.42]	chr12	1045238	12	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	3.77583	4.14218	4.50853	1.05659e-5	2.9478e-8	3.15727e-4	1.96491e-6
chr2	70277125	70277208	1878773	0	+	0.421687	(0.42,0.455]	chr2	177455	2	CDS	CDS:UTR3:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000433351.7:ENST00000264441.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.79881	4.142015	4.48522	1.65328e-4	2.15617e-6	0.0029267300000000002	7.62296e-5
chr21	14378340	14378412	18163739	0	-	0.361111	(0.36,0.39]	chr21	1542411	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4:ENST00000478035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.18348	4.14144	5.0994	0.00310315	4.68763e-5	0.0263402	0.00107286
chr1	230249183	230249271	749489	0	+	0.511364	(0.49,0.53]	chr1	76045	1	CDS	CDS:EXON_MRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.8671	4.14135	5.4156	0.0100489	1.84143e-5	0.0623334	4.53637e-4
chr12	56614045	56614138	13351865	0	-	0.526882	(0.49,0.53]	chr12	1051695	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000547647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.8671	4.14135	5.4156	0.0100489	1.84143e-5	0.0623334	4.53637e-4
chr17	81934325	81934407	16710136	0	-	0.634146	(0.59,1]	chr17	1377906	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6:ENST00000582198.5:ENST00000405481.8	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.74084	4.141335	4.54183	0.0070583	4.03818e-4	0.0478044	0.00550292
chr7	107955548	107955630	8987547	0	-	0.609756	(0.59,1]	chr7	687639	2	CDS	CDS:UTR3:EXON_MRNA	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.74084	4.141335	4.54183	0.0070583	4.03818e-4	0.0478044	0.00550292
chr1	47217367	47217465	985523	0	-	0.438776	(0.42,0.455]	chr1	104046	12	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	9	141	2	3.53252	4.141245	4.74997	7.12262e-8	2.69175e-9	4.1785e-6	2.71479e-7
chr16	88875819	88875916	16075710	0	-	0.546392	(0.53,0.59]	chr16	1291936	11	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.61294	4.14115	4.66936	0.0310038	0.00103174	0.130016	0.0121443
chr6	170656728	170656828	7556952	0	+	0.59	(0.53,0.59]	chr6	576995	163	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	19	2	3.61294	4.14115	4.66936	0.0310038	0.00103174	0.130016	0.0121443
chrX	1416197	1416295	18925764	0	-	0.561224	(0.53,0.59]	chrX	1612983	30	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.61294	4.14115	4.66936	0.0310038	0.00103174	0.130016	0.0121443
chr15	60347629	60347689	15316694	0	-	0.533333	(0.53,0.59]	chr15	1208910	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	77	2	4.04129	4.14114	4.24099	1.28258e-5	1.5886e-6	3.70041e-4	5.89925e-5
chr1	111449836	111449873	407238	0	+	0.594595	(0.59,1]	chr1	40163	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.11647	4.141115	5.16576	0.00535979	6.55716e-4	0.0406564	0.0080931
chr15	78932366	78932458	15398700	0	-	0.608696	(0.59,1]	chr15	1217588	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1:ENST00000529263.7:ENST00000534038.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	46	2	3.11647	4.141115	5.16576	0.00535979	6.55716e-4	0.0406564	0.0080931
chr2	75660030	75660129	1894609	0	+	0.363636	(0.36,0.39]	chr2	179770	49	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.29474	4.141085	4.98743	0.00194306	8.82225e-5	0.0185233	0.00178337
chr2	149576489	149576542	2932959	0	-	0.358491	(0.33,0.36]	chr2	260047	2	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.45014	4.1410599999999995	4.83198	1.88689e-4	8.23333e-5	0.0032588	0.00155613
chr11	1803445	1803537	12230571	0	-	0.586957	(0.53,0.59]	chr11	944438	7	EXON_PSEUDO	EXON_PSEUDO	AC139143.2	ENSG00000230080.2	ENST00000441772.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr11	62626684	62626770	12409710	0	-	0.534884	(0.53,0.59]	chr11	961238	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000528503.1:ENST00000534779.5:ENST00000531563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr12	62021828	62021914	13366749	0	-	0.534884	(0.53,0.59]	chr12	1053591	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	TAFA2:RPS3P6	ENSG00000198673.11:ENSG00000213363.4	ENST00000416284.8:ENST00000551619.5:ENST00000549379.5:ENST00000551449.1:ENST00000552075.5:ENST00000549958.5:ENST00000548780.1:ENST00000487417.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr15	75211307	75211403	15031795	0	+	0.541667	(0.53,0.59]	chr15	1181702	3	UTR3	UTR3:EXON_MRNA	C15orf39	ENSG00000167173.19	ENST00000360639.6:ENST00000394987.5:ENST00000567617.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr17	7254582	7254673	16103726	0	+	0.571429	(0.53,0.59]	chr17	1296200	1	CDS	CDS:UTR5:EXON_MRNA	ELP5	ENSG00000170291.15	ENST00000573699.5:ENST00000573513.5:ENST00000354429.6:ENST00000574255.5:ENST00000356683.6:ENST00000396627.6:ENST00000570500.5:ENST00000396628.6:ENST00000574993.5:ENST00000573657.5:ENST00000570322.5:ENST00000576496.5:ENST00000574841.2:ENST00000571146.2:ENST00000572104.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr17	61591080	61591180	16625636	0	-	0.58	(0.53,0.59]	chr17	1366490	1	CDS_START	CDS_START:CDS:EXON_MRNA	NACA2	ENSG00000253506.3	ENST00000521764.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr17	82850020	82850120	16386362	0	+	0.56	(0.53,0.59]	chr17	1332978	35	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr19	45488470	45488511	17588779	0	-	0.585366	(0.53,0.59]	chr19	1480172	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RTN2	ENSG00000125744.12	ENST00000587597.5:ENST00000590526.5:ENST00000344680.8:ENST00000591286.5:ENST00000245923.9:ENST00000430715.6:ENST00000588036.5:ENST00000593187.5:ENST00000590746.5:ENST00000593129.1:ENST00000591789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr2	73234235	73234306	1885297	0	+	0.549296	(0.53,0.59]	chr2	178502	1	UTR5	UTR5:EXON_MRNA:INTRON	CCT7	ENSG00000135624.16	ENST00000471927.5:ENST00000469844.5:ENST00000473197.5:ENST00000492253.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr2	74867709	74867784	1893178	0	+	0.573333	(0.53,0.59]	chr2	179564	2	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1:ENST00000472302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr2	96828098	96828195	1944176	0	+	0.556701	(0.53,0.59]	chr2	184242	1	CDS	CDS:EXON_MRNA	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4:ENST00000465224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr22	28049055	28049155	18457347	0	-	0.55	(0.53,0.59]	chr22	1574701	183	INTRON	INTRON	TTC28	ENSG00000100154.14	ENST00000397906.6:ENST00000612946.4:ENST00000442232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr7	107959764	107959834	8987594	0	-	0.585714	(0.53,0.59]	chr7	687653	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1:ENST00000393560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr9	100731797	100731890	10389589	0	+	0.548387	(0.53,0.59]	chr9	782733	7	EXON_PSEUDO	EXON_PSEUDO	ACTG1P19	ENSG00000237999.2	ENST00000418987.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.61856	4.14102	4.66348	0.0303021	0.00107799	0.129773	0.0118238
chr12	104265660	104265748	13058277	0	+	0.647727	(0.59,1]	chr12	1017573	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	TXNRD1:RPL18AP3	ENSG00000198431.16:ENSG00000213442.5	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1:ENST00000462885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	3	127	2	4.1264	4.14099	4.15558	6.92354e-5	2.34619e-6	0.00146697	8.24647e-5
chr1	17413125	17413178	874066	0	-	0.54717	(0.53,0.59]	chr1	89620	2	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.87884	4.140675	4.40251	1.11478e-4	4.48447e-6	0.00213212	1.41623e-4
chr8	18075540	18075587	9733009	0	-	0.489362	(0.455,0.49]	chr8	736344	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1:ENST00000637792.1:ENST00000637898.1:ENST00000637536.1:ENST00000637946.1:ENST00000520051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.81275	4.140665	4.46858	0.0138827	2.38087e-6	0.0760883	8.3081e-5
chr12	49131300	49131397	13324010	0	-	0.587629	(0.53,0.59]	chr12	1045762	1	UTR5	UTR5:EXON_MRNA	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1:ENST00000551324.5:ENST00000547476.5:ENST00000552984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	761	2	4.11038	4.140560000000001	4.17074	1.89238e-12	1.69409e-12	3.98751e-10	3.92294e-10
chrX	154353078	154353156	19278005	0	-	0.602564	(0.59,1]	chrX	1638264	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000466325.1:ENST00000415241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.69477	4.14038	5.58599	0.020208	1.04372e-4	0.0978331	0.00186841
chr22	19904428	19904527	18435030	0	-	0.585859	(0.53,0.59]	chr22	1571076	50	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	3.61133	4.140345	4.66936	0.00103174	4.55298e-4	0.0121443	0.00608573
chr1	67411207	67411307	1079118	0	-	0.4	(0.39,0.42]	chr1	110137	35	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	5	93	2	4.03491	4.140264999999999	4.24562	1.51324e-6	1.9961e-8	6.2379e-5	1.40546e-6
chr19	39433272	39433345	17563222	0	-	0.589041	(0.53,0.59]	chr19	1475625	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000602153.5:ENST00000595386.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	791	2	3.61851	4.1398850000000005	4.66126	3.10172e-10	1e-12	4.11082e-8	2.25522e-10
chr6	27865550	27865647	7105345	0	+	0.639175	(0.59,1]	chr6	543488	2	CDS	CDS:EXON_MRNA	H2AC16	ENSG00000276903.2	ENST00000613174.2	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.78188	4.139875	4.49787	3.33896e-4	9.22386e-6	0.00472923	2.83868e-4
chr11	4135175	4135270	11774443	0	+	0.442105	(0.42,0.455]	chr11	901048	2	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	4.02772	4.13987	4.25202	4.30844e-5	1.07036e-5	0.00100091	2.92107e-4
chr11	883145	883224	12228447	0	-	0.594937	(0.59,1]	chr11	943946	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000528534.1:ENST00000524832.5:ENST00000531010.1:ENST00000531859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.0542	4.139844999999999	5.22549	0.00663549	5.13843e-4	0.0456243	0.00665221
chrX	134427703	134427802	18863555	0	+	0.313131	(0.29,0.33]	chrX	1607356	25	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.48886	4.1396049999999995	5.79035	0.0055888	7.26161e-7	0.0419759	3.03698e-5
chrX	53533121	53533214	19077145	0	-	0.548387	(0.53,0.59]	chrX	1622623	12	UTR3	UTR3:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	5	102	2	3.38664	4.13959	4.89254	5.10107e-6	1.22494e-7	1.57702e-4	7.48996e-6
chr11	66284718	66284801	12423975	0	-	0.698795	(0.59,1]	chr11	964474	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YIF1A	ENSG00000174851.16	ENST00000359461.10:ENST00000376901.9:ENST00000471387.6:ENST00000526497.5:ENST00000485820.1:ENST00000496746.5:ENST00000494836.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.5215	4.13957	5.75764	0.032241	4.53637e-5	0.135671	9.4617e-4
chr17	22204668	22204765	16168818	0	+	0.546392	(0.53,0.59]	chr17	1304328	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	99	2	3.94515	4.139495	4.33384	3.18429e-6	1.65563e-7	1.06148e-4	9.74137e-6
chr1	51356601	51356699	1014257	0	-	0.326531	(0.29,0.33]	chr1	104961	25	UTR3	UTR3:EXON_MRNA	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.8228	4.13907	4.45534	0.00110984	1.45428e-4	0.0127344	0.00244094
chr11	82860046	82860117	12499461	0	-	0.323944	(0.29,0.33]	chr11	971467	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000680524.1:ENST00000393399.6:ENST00000528082.6:ENST00000524642.6:ENST00000531283.2:ENST00000527444.6:ENST00000534631.5:ENST00000531128.5:ENST00000534396.5:ENST00000529671.5:ENST00000533126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.8228	4.13907	4.45534	0.00110984	1.45428e-4	0.0127344	0.00244094
chr18	211775	211874	16716210	0	+	0.393939	(0.39,0.42]	chr18	1379161	6	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8:ENST00000578942.5:ENST00000383589.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.95786	4.138775	5.31969	0.00138212	2.68682e-5	0.0149186	6.19143e-4
chr14	102727989	102728088	14500047	0	+	0.292929	(0.29,0.33]	chr14	1133640	16	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.97941	4.138675	4.29794	5.81801e-5	2.87452e-7	0.00116944	1.54944e-5
chr11	119092415	119092515	12162017	0	+	0.59	(0.53,0.59]	chr11	937738	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000543090.5:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648374.1:ENST00000544182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	149	2	3.82091	4.13851	4.45611	6.10792e-8	4.7275e-8	4.04881e-6	2.93425e-6
chr16	70555128	70555206	15729990	0	+	0.525641	(0.49,0.53]	chr16	1252959	2	CDS	CDS:UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567635.5:ENST00000567250.5:ENST00000568291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.33324	4.138434999999999	4.94363	0.00162947	2.3417e-4	0.0169972	0.00355764
chr21	29063351	29063440	18202013	0	-	0.382022	(0.36,0.39]	chr21	1544731	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000475205.1:ENST00000431234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	120	2	3.85134	4.138305	4.42527	7.01261e-7	4.1403e-10	3.29378e-5	4.80691e-8
chr11	119096997	119097063	12626615	0	-	0.484848	(0.455,0.49]	chr11	979851	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	3.94061	4.13813	4.33565	5.69287e-6	2.93826e-6	1.88744e-4	9.91141e-5
chr1	179864880	179864978	1394842	0	-	0.489796	(0.455,0.49]	chr1	141316	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.12843	4.138085	5.14774	0.00392855	7.45457e-5	0.0322851	0.00142165
chr15	73587523	73587618	15372059	0	-	0.473684	(0.455,0.49]	chr15	1214705	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.12843	4.138085	5.14774	0.00392855	7.45457e-5	0.0322851	0.00142165
chr17	82251378	82251452	16712212	0	-	0.472973	(0.455,0.49]	chr17	1378483	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1D	ENSG00000141551.14	ENST00000398519.9:ENST00000314028.10:ENST00000581241.5:ENST00000584377.5:ENST00000392334.6:ENST00000580784.5:ENST00000269361.11:ENST00000403276.7:ENST00000581108.5:ENST00000582844.5:ENST00000578904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.12843	4.138085	5.14774	0.00392855	7.45457e-5	0.0322851	0.00142165
chr2	70288129	70288192	2724364	0	-	0.412698	(0.39,0.42]	chr2	242733	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.59744	4.138	5.67856	0.00572981	1.29189e-6	0.0417368	5.48279e-5
chr22	19968636	19968736	18296524	0	+	0.6	(0.59,1]	chr22	1553021	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	164	2	4.06457	4.138	4.21143	9.48087e-5	2.13594e-7	0.00188744	1.075e-5
chr19	58549155	58549240	17413347	0	+	0.694118	(0.59,1]	chr19	1451210	3	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000601150.5:ENST00000597136.1:ENST00000595028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	126	2	4.11936	4.137855	4.15635	5.93256e-5	2.95054e-6	0.00130151	9.93235e-5
chr12	34026719	34026815	12822294	0	+	0.385417	(0.36,0.39]	chr12	995601	10	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.54224	4.13785	4.73346	3.2963e-4	4.51643e-5	0.00504024	9.43703e-4
chr1	235113767	235113838	1560111	0	-	0.464789	(0.455,0.49]	chr1	156019	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000467767.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	180	2	3.64908	4.13773	4.62638	5.68197e-7	1.13157e-11	2.74237e-5	1.93807e-9
chr8	143993032	143993128	9649815	0	+	0.635417	(0.59,1]	chr8	731413	3	UTR3	UTR3:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000527194.5	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	3.8001	4.137625	4.47515	2.36702e-5	8.73507e-6	6.1689e-4	0.00024628300000000003
chr13	49660967	49661067	14019769	0	-	0.45	(0.42,0.455]	chr13	1099593	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	4.03383	4.13758	4.24133	0.00326918	4.24324e-5	0.0282494	8.98949e-4
chr5	68159217	68159313	6621863	0	-	0.427083	(0.42,0.455]	chr5	511721	1	EXON_PSEUDO	EXON_PSEUDO	EEF1B2P2	ENSG00000213864.3	ENST00000519625.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	4.03383	4.13758	4.24133	0.00326918	4.24324e-5	0.0282494	8.98949e-4
chr3	95172010	95172102	3612049	0	+	0.445652	(0.42,0.455]	chr3	310539	2	EXON_PSEUDO	EXON_PSEUDO	RPS18P6	ENSG00000244048.1	ENST00000476880.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	40	2	2.34191	4.137545	5.93318	0.0159091	5.79703e-7	0.0854674	2.50873e-5
chr3	182944994	182945093	4615675	0	-	0.363636	(0.36,0.39]	chr3	380839	71	UTR3	UTR3:EXON_MRNA	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.84089	4.13752	5.43415	0.0128123	1.15393e-5	0.0719798	3.09736e-4
chr11	57425540	57425595	12394623	0	-	0.563636	(0.53,0.59]	chr11	958692	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC43A3	ENSG00000134802.18	ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5:ENST00000530232.1:ENST00000528187.5:ENST00000529494.5:ENST00000533245.5:ENST00000533235.5:ENST00000524863.5:ENST00000532795.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	98	2	4.13142	4.137275000000001	4.14313	8.11888e-7	7.34074e-7	3.41945e-5	3.35153e-5
chr1	235110701	235110798	1560079	0	-	0.329897	(0.29,0.33]	chr1	156012	15	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.94844	4.137215	5.32599	0.00217122	1.44019e-9	0.0208941	1.45177e-7
chr16	24549309	24549401	15600651	0	+	0.315217	(0.29,0.33]	chr16	1236990	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000452655.6:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.67277	4.137095	5.60142	0.0255386	2.77244e-6	0.117089	9.47025e-5
chr2	75658350	75658448	1894592	0	+	0.295918	(0.29,0.33]	chr2	179770	32	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.67277	4.137095	5.60142	0.0255386	2.77244e-6	0.117089	9.47025e-5
chr19	18899513	18899595	17501136	0	-	0.573171	(0.53,0.59]	chr19	1468448	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000600528.1:ENST00000349893.8:ENST00000595984.5:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	3.2308500000000002	4.136915	5.04298	2.81517e-4	1.91383e-4	0.00415519	0.0032874
chr6	31817858	31817946	7116682	0	+	0.261364	[0,0.29]	chr6	546206	3	UTR3	UTR3:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	11	134	2	3.45418	4.136875	4.81957	3.13415e-7	4.1992e-12	1.66999e-5	8.07621e-10
chr6	31817682	31817770	7116680	0	+	0.386364	(0.36,0.39]	chr6	546206	1	UTR3	UTR3:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	13	198	2	3.78842	4.136815	4.48521	4.96276e-9	1.01876e-11	4.58554e-7	1.7683e-9
chr2	113938265	113938364	2006923	0	+	0.353535	(0.33,0.36]	chr2	190773	35	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	3.14772	4.1367	5.12568	6.79194e-4	1.01535e-8	0.00876781	7.85795e-7
chr3	113850632	113850731	4360589	0	-	0.484848	(0.455,0.49]	chr3	363949	5	EXON_PSEUDO	EXON_PSEUDO	RP11-435F17.1	ENSG00000240776.1	ENST00000485426.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	73	2	3.63654	4.136305	4.63607	3.17743e-6	6.94376e-7	1.16721e-4	2.92826e-5
chr7	34930972	34931072	8766513	0	-	0.34	(0.33,0.36]	chr7	668474	22	UTR3	UTR3:EXON_MRNA	DPY19L1	ENSG00000173852.15	ENST00000310974.8:ENST00000638088.2	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.9015	4.136195	4.37089	9.11613e-5	5.4707e-6	0.00168187	1.82072e-4
chr19	1924107	1924184	17194566	0	+	0.623377	(0.59,1]	chr19	1412503	1	CDS	CDS:UTR3:EXON_MRNA	SCAMP4	ENSG00000227500.10	ENST00000414057.6:ENST00000316097.13:ENST00000409472.5:ENST00000621748.1:ENST00000472442.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.9891200000000002	4.13598	5.28284	0.00823979	4.04404e-4	0.0540283	0.00550292
chr18	214432	214530	16716237	0	+	0.408163	(0.39,0.42]	chr18	1379161	33	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	4.01791	4.13583	4.25375	4.78174e-5	1.03195e-5	0.00109049	2.84226e-4
chr3	14484907	14485007	3320831	0	+	0.58	(0.53,0.59]	chr3	292286	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.00674	4.1358250000000005	5.26491	8.9408e-4	6.31437e-5	0.01086	0.00124286
chr1	53210410	53210506	198423	0	+	0.40625	(0.39,0.42]	chr1	25299	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	CPT2	ENSG00000157184.7	ENST00000636867.1:ENST00000637252.1:ENST00000636891.1:ENST00000636239.1:ENST00000636935.1:ENST00000635888.1:ENST00000635862.1:ENST00000371486.4:ENST00000638135.1:ENST00000637726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.93975	4.1355249999999995	4.3313	0.0105893	0.00209984	0.0644466	0.0204266
chr1	113126688	113126787	413692	0	+	0.414141	(0.39,0.42]	chr1	40851	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.93975	4.1355249999999995	4.3313	0.0105893	0.00209984	0.0644466	0.0204266
chr15	61961388	61961488	15330649	0	-	0.4	(0.39,0.42]	chr15	1209602	4	SS5_PROX	SS5_PROX:INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3:ENST00000558088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.93975	4.1355249999999995	4.3313	0.0105893	0.00209984	0.0644466	0.0204266
chr19	18150414	18150512	17257421	0	+	0.418367	(0.39,0.42]	chr19	1425138	8	UTR3	UTR3:EXON_MRNA	MAST3	ENSG00000099308.10	ENST00000262811.10	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.93975	4.1355249999999995	4.3313	0.0105893	0.00209984	0.0644466	0.0204266
chr3	42594800	42594897	3435699	0	+	0.412371	(0.39,0.42]	chr3	298846	4	UTR3	UTR3:EXON_MRNA	SS18L2	ENSG00000008324.12	ENST00000447630.5:ENST00000011691.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.93975	4.1355249999999995	4.3313	0.0105893	0.00209984	0.0644466	0.0204266
chr4	147910476	147910576	5153832	0	+	0.4	(0.39,0.42]	chr4	416961	3	INTRON	INTRON	ARHGAP10	ENSG00000071205.12	ENST00000336498.8:ENST00000506054.5:ENST00000507661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.93975	4.1355249999999995	4.3313	0.0105893	0.00209984	0.0644466	0.0204266
chr1	45641381	45641477	978842	0	-	0.3125	(0.29,0.33]	chr1	103208	6	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	4.0747	4.135425	4.19615	0.00577533	2.2256e-5	0.0417823	5.84518e-4
chr18	2577968	2578054	16726061	0	+	0.372093	(0.36,0.39]	chr18	1379583	1	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.76778	4.135365	5.50295	0.00365703	7.4907e-6	0.0307238	2.17853e-4
chr21	33550562	33550661	18101162	0	+	0.59596	(0.59,1]	chr21	1534525	12	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	SON:MIR6501	ENSG00000159140.21:ENSG00000284448.1	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000290239.7	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	2	60	2	2.76006	4.1352899999999995	5.51052	0.00330486	0.00019737500000000001	0.027613	0.00336487
chr7	5300662	5300762	8111815	0	+	0.7	(0.59,1]	chr7	619984	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC29A4	ENSG00000164638.11	ENST00000396872.8:ENST00000297195.8:ENST00000406453.3:ENST00000439491.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	193	2	3.2224	4.134875	5.04735	4.73062e-4	4.70346e-9	0.00668763	4.04076e-7
chr1	89713893	89713992	346888	0	+	0.393939	(0.39,0.42]	chr1	34108	13	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr1	173836939	173836992	550103	0	+	0.415094	(0.39,0.42]	chr1	58446	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000648458.1:ENST00000649106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr10	87552185	87552281	11173906	0	+	0.416667	(0.39,0.42]	chr10	849136	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1:ENST00000472891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr11	111725118	111725217	12134435	0	+	0.40404	(0.39,0.42]	chr11	934554	11	UTR3	UTR3:EXON_MRNA	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr12	131995456	131995555	13160065	0	+	0.414141	(0.39,0.42]	chr12	1028644	1	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr2	37228140	37228239	2598196	0	-	0.414141	(0.39,0.42]	chr2	234066	7	CDS	CDS:EXON_MRNA	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr3	5180427	5180524	3278263	0	+	0.412371	(0.39,0.42]	chr3	288772	18	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr3	119523851	119523946	3690057	0	+	0.4	(0.39,0.42]	chr3	315443	2	UTR3	UTR3:EXON_MRNA	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000264244.7:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr5	62394545	62394607	6611697	0	-	0.419355	(0.39,0.42]	chr5	511053	2	CDS	CDS:UTR3:EXON_MRNA	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000506390.5:ENST00000514911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr7	4770045	4770145	8109659	0	+	0.4	(0.39,0.42]	chr7	619657	77	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.1206	4.134729999999999	4.14886	0.00597537	0.00415881	0.0428562	0.0325842
chr11	71435665	71435742	12444403	0	-	0.649351	(0.59,1]	chr11	966974	1	CDS	CDS:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5:ENST00000525137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	168	2	3.79127	4.134695	4.47812	2.1425e-5	3.65285e-7	5.12077e-4	1.90412e-5
chr11	87071522	87071615	12052360	0	+	0.451613	(0.42,0.455]	chr11	929253	1	CDS	CDS:EXON_MRNA:INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.62315	4.134695	4.64624	8.75333e-4	4.234e-4	0.0101169	0.00613535
chr7	100633485	100633556	8952308	0	-	0.690141	(0.59,1]	chr7	684210	2	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000476304.5:ENST00000475011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	127	2	4.09582	4.134589999999999	4.17336	8.09451e-5	2.09509e-6	0.00167997	7.43277e-5
chr21	29066890	29066980	18202052	0	-	0.4	(0.39,0.42]	chr21	1544745	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	77	2	4.1024	4.134515	4.16663	1.84729e-5	7.13898e-8	5.02409e-4	4.18382e-6
chr7	43690409	43690509	8794438	0	-	0.32	(0.29,0.33]	chr7	670449	243	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	3.59596	4.134449999999999	4.67294	1.74133e-6	4.55565e-7	7.05152e-5	2.04528e-5
chr15	72200564	72200655	15368002	0	-	0.637363	(0.59,1]	chr15	1214129	2	CDS	CDS:UTR3:EXON_MRNA	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000565143.1:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	194	2	3.94757	4.13434	4.32111	1.2863e-6	1.01643e-6	4.95384e-5	4.4913e-5
chr1	226364006	226364070	1533044	0	-	0.453125	(0.42,0.455]	chr1	153425	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000677374.1:ENST00000677815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.75179	4.13427	5.51675	8.66526e-4	5.14372e-6	0.0100799	1.73456e-4
chr8	47898469	47898569	9816786	0	-	0.4	(0.39,0.42]	chr8	742779	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.19588	4.1342300000000005	5.07258	0.00321212	1.94725e-8	0.0280721	1.37715e-6
chr10	73046924	73047012	11568635	0	-	0.386364	(0.36,0.39]	chr10	880481	1	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	11	205	2	3.62264	4.13423	4.64582	8.733e-7	1e-12	3.95338e-5	2.25522e-10
chr1	38864075	38864174	951533	0	-	0.434343	(0.42,0.455]	chr1	100303	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP5-864K19.7:MYCBP	ENSG00000273637.1:ENSG00000214114.9	ENST00000622355.1:ENST00000397572.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	27	2	3.31161	4.134105	4.9566	0.00186138	2.10615e-4	0.018635	0.00327655
chr10	123157728	123157804	11298993	0	+	0.447368	(0.42,0.455]	chr10	861566	1	CDS	CDS:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.31161	4.134105	4.9566	0.00186138	2.10615e-4	0.018635	0.00327655
chrX	19359488	19359553	18604955	0	+	0.523077	(0.49,0.53]	chrX	1589059	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000379804.1:ENST00000478795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	1.9035	4.133875	6.36425	0.0295204	2.32873e-8	0.129773	1.60638e-6
chr16	28844484	28844551	15907774	0	-	0.552239	(0.53,0.59]	chr16	1273894	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	TUFM:MIR4721	ENSG00000178952.11:ENSG00000283845.1	ENST00000313511.8:ENST00000577590.1:ENST00000565012.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	3	50	2	2.62668	4.133705	5.64073	0.00157636	7.00135e-6	0.015761	2.25852e-4
chr11	119100778	119100827	12626659	0	-	0.571429	(0.53,0.59]	chr11	979869	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000640747.1:ENST00000682883.1:ENST00000682404.1:ENST00000442480.1:ENST00000640102.1:ENST00000525456.5:ENST00000533687.1:ENST00000460183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	3.98115	4.133595	4.28604	6.28226e-5	9.59485e-6	0.00124286	2.93255e-4
chr6	70394961	70395043	7220343	0	+	0.536585	(0.53,0.59]	chr6	557271	2	EXON_LNCRNA	EXON_LNCRNA	RP11-462G2.1	ENSG00000237643.2	ENST00000671572.1:ENST00000418403.2:ENST00000667898.1	lncRNA	lncRNA	lncRNA	lncRNA	5	131	2	3.66389	4.13341	4.60293	2.13854e-5	1.10496e-9	5.67072e-4	1.14257e-7
chr2	47378952	47379003	1784407	0	+	0.254902	[0,0.29]	chr2	172413	1	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.28583	4.133395	4.98096	0.00346525	3.39336e-8	0.0293796	2.20709e-6
chr8	98041720	98041800	9962814	0	-	0.275	[0,0.29]	chr8	751692	1	UTR3	UTR3:EXON_MRNA:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000521534.1:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	233	2	4.03546	4.1333649999999995	4.23127	8.67929e-9	1e-12	7.48501e-7	2.25522e-10
chr2	197392302	197392402	3106295	0	-	0.37	(0.36,0.39]	chr2	274494	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000479532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.63521	4.133319999999999	5.63143	0.00633242	3.24005e-6	0.0446708	1.07746e-4
chr5	10680889	10680972	6447554	0	-	0.385542	(0.36,0.39]	chr5	502260	2	CDS	CDS:UTR3:EXON_MRNA	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.63521	4.133319999999999	5.63143	0.00633242	3.24005e-6	0.0446708	1.07746e-4
chr17	76561287	76561373	16359159	0	+	0.581395	(0.53,0.59]	chr17	1328574	1	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000591956.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	3	77	2	4.07196	4.133229999999999	4.1945	1.72205e-5	1.26681e-6	4.72777e-4	4.89488e-5
chr11	34470957	34471041	11906339	0	+	0.52381	(0.49,0.53]	chr11	909832	1	CDS	CDS:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000534710.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	3.76099	4.133225	4.50546	2.00194e-4	1.89933e-6	0.0034021	6.87959e-5
chr17	39984388	39984484	16222442	0	+	0.5	(0.49,0.53]	chr17	1311716	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.72252	4.13321	5.5439	0.0161474	8.44877e-6	0.0860154	2.39255e-4
chr2	85350940	85351021	2770305	0	-	0.506173	(0.49,0.53]	chr2	245702	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RETSAT	ENSG00000042445.14	ENST00000295802.9:ENST00000449375.1:ENST00000409984.2:ENST00000482694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.72252	4.13321	5.5439	0.0161474	8.44877e-6	0.0860154	2.39255e-4
chr8	47890330	47890405	9816702	0	-	0.506667	(0.49,0.53]	chr8	742761	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.72252	4.13321	5.5439	0.0161474	8.44877e-6	0.0860154	2.39255e-4
chr10	74119865	74119965	11117666	0	+	0.37	(0.36,0.39]	chr10	846311	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.06292	4.133115	5.20331	0.00499846	2.53222e-5	0.0370021	6.51851e-4
chr4	120065671	120065744	5621525	0	-	0.383562	(0.36,0.39]	chr4	448099	1	CDS	CDS:EXON_MRNA:INTRON	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000511295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.06292	4.133115	5.20331	0.00499846	2.53222e-5	0.0370021	6.51851e-4
chr1	112701209	112701293	1231802	0	-	0.547619	(0.53,0.59]	chr1	120328	2	UTR3	UTR3:EXON_MRNA	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.99511	4.13299	5.27087	9.46531e-4	5.9416e-5	0.010681	0.00130151
chr2	27201665	27201756	2569371	0	-	0.549451	(0.53,0.59]	chr2	231190	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6:ENST00000408041.5:ENST00000461319.5:ENST00000481751.5:ENST00000492069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.99511	4.13299	5.27087	9.46531e-4	5.9416e-5	0.010681	0.00130151
chr12	111450939	111451036	13092107	0	+	0.505155	(0.49,0.53]	chr12	1021116	28	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.94403	4.13291	5.32179	0.00122634	2.63311e-5	0.0130695	6.73425e-4
chr15	57953620	57953718	15305090	0	-	0.397959	(0.39,0.42]	chr15	1208082	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	167	2	4.0986	4.13288	4.16716	9.65509e-9	3.59497e-10	8.25497e-7	4.24153e-8
chr19	40369956	40370028	17328648	0	+	0.708333	(0.59,1]	chr19	1435560	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	PLD3:MIR6796	ENSG00000105223.20:ENSG00000275652.1	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000409281.5:ENST00000359274.5:ENST00000492243.1:ENST00000599353.1:ENST00000617519.1:ENST00000480030.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	47	2	3.44238	4.132815	4.82325	0.002381	0.00158239	0.0216895	0.0167793
chr3	197955773	197955866	3993009	0	+	0.258065	[0,0.29]	chr3	336625	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000642387.1:ENST00000429437.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.91289	4.13278	5.35267	9.07288e-4	1.05508e-9	0.0110102	1.10014e-7
chr11	85634085	85634181	12045152	0	+	0.385417	(0.36,0.39]	chr11	928790	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM126B	ENSG00000171204.13	ENST00000393375.5:ENST00000358867.11:ENST00000531477.5:ENST00000531718.5:ENST00000530783.5:ENST00000528361.5:ENST00000534341.1:ENST00000526822.5:ENST00000529197.1:ENST00000531274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	4.03284	4.1326599999999996	4.23248	4.15492e-5	1.28371e-5	8.8376e-4	3.70041e-4
chr2	43225180	43225275	2618856	0	-	0.610526	(0.59,1]	chr2	235740	9	CDS	CDS:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.1277	4.132245	5.13679	0.00490589	9.28022e-4	0.0366648	0.0111748
chr15	71063396	71063495	15363874	0	-	0.434343	(0.42,0.455]	chr15	1213687	4	EXON_PSEUDO	EXON_PSEUDO	RPL5P3	ENSG00000242276.2	ENST00000493817.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	3.46349	4.132065	4.80064	9.0025e-4	3.0479e-4	0.0102618	0.00472028
chr7	29916869	29916967	8200188	0	+	0.44898	(0.42,0.455]	chr7	625501	25	UTR3	UTR3:EXON_MRNA	WIPF3	ENSG00000122574.11	ENST00000242140.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.46349	4.132065	4.80064	9.0025e-4	3.0479e-4	0.0102618	0.00472028
chr1	192716327	192716390	630833	0	+	0.380952	(0.36,0.39]	chr1	64055	1	EXON_SMALL	EXON_SMALL:CDS:EXON_MRNA:PRIMIRNA	MIR4426:RPS27AP5	ENSG00000283795.1:ENSG00000231767.4	ENST00000640330.1:ENST00000647225.1:ENST00000443181.2	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:primary_miRNA	1	25	2	3.39803	4.13203	4.86603	0.00122711	1.68962e-4	0.0130695	0.00297945
chr12	113390854	113390950	13101763	0	+	0.53125	(0.53,0.59]	chr12	1022448	24	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	5	118	2	4.11371	4.131965	4.15022	9.16965e-7	6.1892e-8	4.11625e-5	3.70314e-6
chr3	98516758	98516818	4318884	0	-	0.5	(0.49,0.53]	chr3	360206	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000513873.1:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000506927.1:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	3.23006	4.131935	5.03381	0.00253719	1.49689e-4	0.0233955	0.0024973
chrX	40934981	40935079	19047373	0	-	0.561224	(0.53,0.59]	chrX	1619017	1	EXON_PSEUDO	EXON_PSEUDO	RPS2P55	ENSG00000216866.5	ENST00000397318.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	160	2	3.61075	4.1319	4.65305	1.05301e-7	1.14604e-8	5.82951e-6	9.53659e-7
chr17	1658604	1658683	16401354	0	-	0.468354	(0.455,0.49]	chr17	1334864	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.69053	4.131855	5.57318	0.0182983	6.11867e-6	0.0925808	1.83393e-4
chr8	73946629	73946729	9893788	0	-	0.46	(0.455,0.49]	chr8	747927	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ELOC	ENSG00000154582.17	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000622804.1:ENST00000520210.1:ENST00000519487.5:ENST00000284811.12:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.69053	4.131855	5.57318	0.0182983	6.11867e-6	0.0925808	1.83393e-4
chr9	88324453	88324551	10348048	0	+	0.489796	(0.455,0.49]	chr9	778863	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP49	ENSG00000226327.3	ENST00000445182.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	2.69053	4.131855	5.57318	0.0182983	6.11867e-6	0.0925808	1.83393e-4
chr1	109310163	109310263	1219431	0	-	0.28	[0,0.29]	chr1	118935	7	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.90176	4.131795	4.36183	0.00977224	0.00170062	0.0611259	0.01759
chr7	140031065	140031164	9105545	0	-	0.282828	[0,0.29]	chr7	694747	20	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000466597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.90176	4.131795	4.36183	0.00977224	0.00170062	0.0611259	0.01759
chr1	149887169	149887264	464897	0	+	0.621053	(0.59,1]	chr1	46815	2	CDS	CDS:EXON_MRNA	H2AC20	ENSG00000184260.6	ENST00000331380.4	protein_coding	protein_coding	protein_coding	protein_coding	9	336	2	4.05939	4.131615	4.20384	7.28013e-8	5.27932e-8	4.71657e-6	3.2354e-6
chr17	67357302	67357366	16652648	0	-	0.3125	(0.29,0.33]	chr17	1369587	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5:ENST00000578015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.62312	4.13143	4.63974	0.0222826	4.81181e-4	0.104593	0.00677016
chr7	17793844	17793944	8709279	0	-	0.33	(0.29,0.33]	chr7	664977	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000496855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.62312	4.13143	4.63974	0.0222826	4.81181e-4	0.104593	0.00677016
chr8	60621772	60621871	9353527	0	+	0.313131	(0.29,0.33]	chr8	715323	11	UTR3	UTR3:EXON_MRNA	RAB2A	ENSG00000104388.15	ENST00000262646.12	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.62312	4.13143	4.63974	0.0222826	4.81181e-4	0.104593	0.00677016
chr15	89115322	89115421	15092630	0	+	0.414141	(0.39,0.42]	chr15	1187038	11	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.49145	4.131255	4.77106	0.0350273	3.03764e-4	0.141505	0.00472028
chr6	129626052	129626152	7956129	0	-	0.41	(0.39,0.42]	chr6	608259	68	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.49145	4.131255	4.77106	0.0350273	3.03764e-4	0.141505	0.00472028
chr11	119308624	119308721	12626828	0	-	0.453608	(0.42,0.455]	chr11	979926	2	UTR3	UTR3:EXON_MRNA	MCAM	ENSG00000076706.17	ENST00000264036.6	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.46169	4.131164999999999	4.80064	0.03884	3.0479e-4	0.149227	0.00472028
chr17	7174660	7174760	16428444	0	-	0.45	(0.42,0.455]	chr17	1339086	2	SS3_PROX	SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.46169	4.131164999999999	4.80064	0.03884	3.0479e-4	0.149227	0.00472028
chr22	44154614	44154713	18390754	0	+	0.454545	(0.42,0.455]	chr22	1566016	11	INTRON	INTRON	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.46169	4.131164999999999	4.80064	0.03884	3.0479e-4	0.149227	0.00472028
chr7	7637917	7637972	8669907	0	-	0.454545	(0.42,0.455]	chr7	663470	2	CDS	CDS:EXON_MRNA	RPA3	ENSG00000106399.11	ENST00000223129.8:ENST00000406109.5:ENST00000396682.6:ENST00000401447.1:ENST00000483031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.46169	4.131164999999999	4.80064	0.03884	3.0479e-4	0.149227	0.00472028
chr21	44770876	44770976	18276942	0	-	0.61	(0.59,1]	chr21	1550170	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000481546.1:ENST00000497630.5:ENST00000477954.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.78676	4.130965	4.47517	0.00735659	3.60514e-4	0.0491503	0.00544284
chr19	580645	580660	17188309	0	+	0.666667	(0.59,1]	chr19	1410771	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3:ENST00000680551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	94	2	3.78676	4.130955	4.47515	3.60514e-4	8.73507e-6	0.00544284	0.00024628300000000003
chr1	206907879	206907967	684282	0	+	0.590909	(0.59,1]	chr1	69140	4	EXON_PSEUDO	EXON_PSEUDO	RP11-564A8.4	ENSG00000226945.1	ENST00000446057.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr17	3928662	3928721	16414170	0	-	0.59322	(0.59,1]	chr17	1336668	1	CDS	CDS:EXON_MRNA	ATP2A3	ENSG00000074370.18	ENST00000309890.11:ENST00000397041.8:ENST00000397035.7:ENST00000570773.5:ENST00000352011.7:ENST00000359983.7:ENST00000570845.5:ENST00000397043.7:ENST00000572116.1:ENST00000571245.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr19	44888145	44888245	17349483	0	+	0.65	(0.59,1]	chr19	1439178	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252483.10:ENST00000592018.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr2	128159651	128159720	2060183	0	+	0.608696	(0.59,1]	chr2	193290	3	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7:ENST00000488439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr20	36779521	36779621	17958417	0	-	0.63	(0.59,1]	chr20	1521662	18	UTR3	UTR3:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr6	131808275	131808375	7403814	0	+	0.79	(0.59,1]	chr6	567499	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr7	128848792	128848887	8522448	0	+	0.610526	(0.59,1]	chr7	650407	1	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr9	129006303	129006368	10482853	0	+	0.615385	(0.59,1]	chr9	791181	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.11672	4.130775	4.14483	0.0222273	0.0183207	0.105595	0.0945306
chr16	58707319	58707413	15967616	0	-	0.478723	(0.455,0.49]	chr16	1281403	3	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	3.54461	4.13069	4.71677	4.40117e-5	3.31178e-7	9.24938e-4	1.74638e-5
chr3	37050653	37050749	3411137	0	+	0.34375	(0.33,0.36]	chr3	296365	1	UTR3	UTR3:EXON_MRNA	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000673889.1:ENST00000616768.5:ENST00000674125.1:ENST00000673741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.57559	4.130595	4.6856	0.0262108	3.92435e-4	0.117079	0.00583618
chr9	92554956	92555056	10357681	0	+	0.35	(0.33,0.36]	chr9	779569	1747	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.57559	4.130595	4.6856	0.0262108	3.92435e-4	0.117079	0.00583618
chr4	99948875	99948940	5551587	0	-	0.415385	(0.39,0.42]	chr4	443720	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	103	2	3.73255	4.13056	4.52857	1.51578e-6	1.07599e-9	5.67784e-5	1.21945e-7
chr11	125602907	125602948	12194346	0	+	0.512195	(0.49,0.53]	chr11	940729	1	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	86	2	3.97278	4.130295	4.28781	2.29577e-6	2.05323e-7	8.86852e-5	1.04036e-5
chr8	89790316	89790416	9472791	0	+	0.32	(0.29,0.33]	chr8	720638	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RIPK2	ENSG00000104312.8	ENST00000522965.1:ENST00000220751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.13212	4.129975	5.12783	0.00551048	5.31593e-5	0.0414592	0.00108035
chr17	46030792	46030890	16565484	0	-	0.44898	(0.42,0.455]	chr17	1360684	10	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	3.97371	4.129605	4.2855	6.07552e-5	8.02587e-6	0.00121305	2.50919e-4
chr17	39989738	39989833	16222500	0	+	0.6	(0.59,1]	chr17	1311736	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000580980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.24972	4.1295850000000005	5.00945	0.00314037	0.00149725	0.0264943	0.0159607
chr11	65079008	65079106	12421420	0	-	0.622449	(0.59,1]	chr11	963673	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDCA5	ENSG00000146670.10	ENST00000529290.5:ENST00000525464.1:ENST00000533015.5:ENST00000275517.8:ENST00000524733.5:ENST00000404147.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.28861	4.12938	4.97015	0.0028753	0.00140057	0.0256141	0.0144327
chr5	134422837	134422936	6228850	0	+	0.464646	(0.455,0.49]	chr5	485040	1	EXON_PSEUDO	EXON_PSEUDO	RP11-215P8.1	ENSG00000243648.1	ENST00000471205.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	39	2	2.40664	4.1290949999999995	5.85155	0.0123662	9.4476e-7	0.0705839	3.80876e-5
chr17	59666561	59666644	16295292	0	+	0.39759	(0.39,0.42]	chr17	1321670	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	92	2	4.03491	4.1288149999999995	4.22272	1.51324e-6	2.45544e-8	6.2379e-5	1.68402e-6
chr16	88885045	88885119	16075807	0	-	0.689189	(0.59,1]	chr16	1291969	1	CDS	CDS:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5	protein_coding	protein_coding	protein_coding	protein_coding	0	23	2	3.71566	4.128745	4.54183	0.0487443	0.0070583	0.175495	0.0478044
chr16	20790586	20790637	15582949	0	+	0.372549	(0.36,0.39]	chr16	1234795	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000562251.5:ENST00000567387.5:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.66978	4.1286249999999995	4.58747	6.55819e-4	3.25031e-4	0.00860229	0.00463603
chr6	31645113	31645198	7661444	0	-	0.6	(0.59,1]	chr6	584848	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000469182.1:ENST00000453833.5:ENST00000435080.5:ENST00000462682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.58269	4.12853	5.67437	0.0067313	6.83706e-5	0.0461258	0.00132577
chr10	74114183	74114251	11117605	0	+	0.558824	(0.53,0.59]	chr10	846299	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	3.81839	4.12851	4.43863	0.0184435	0.00254763	0.0945306	0.0233955
chr11	3824050	3824135	11771548	0	+	0.564706	(0.53,0.59]	chr11	900758	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PGAP2	ENSG00000148985.20	ENST00000528216.5:ENST00000300730.10:ENST00000396986.6:ENST00000532535.5:ENST00000396993.8:ENST00000465237.6:ENST00000477358.6:ENST00000532523.5:ENST00000459679.5:ENST00000464229.5:ENST00000490830.5:ENST00000464261.5:ENST00000464906.6:ENST00000485602.5:ENST00000475884.5:ENST00000489571.5:ENST00000464441.5:ENST00000532017.5:ENST00000465307.6:ENST00000493547.6:ENST00000495026.5:ENST00000534498.1:ENST00000396991.6:ENST00000525937.1:ENST00000478773.5:ENST00000278243.9:ENST00000483829.5:ENST00000487112.5:ENST00000463452.6:ENST00000496834.6:ENST00000479072.5:ENST00000469307.4:ENST00000464590.1:ENST00000529944.1:ENST00000527810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	18	2	3.81839	4.12851	4.43863	0.0184435	0.00254763	0.0945306	0.0233955
chr16	30225499	30225598	15913255	0	-	0.575758	(0.53,0.59]	chr16	1275086	25	CDS	CDS:EXON_MRNA	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.81839	4.12851	4.43863	0.0184435	0.00254763	0.0945306	0.0233955
chr19	48137007	48137065	17599805	0	-	0.568965	(0.53,0.59]	chr19	1482320	1	CDS	CDS:UTR3:EXON_MRNA	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000597901.1:ENST00000542460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.81839	4.12851	4.43863	0.0184435	0.00254763	0.0945306	0.0233955
chr1	40416937	40417016	153983	0	+	0.56962	(0.53,0.59]	chr1	19273	3	CDS	CDS:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr11	65210393	65210452	11982931	0	+	0.559322	(0.53,0.59]	chr11	920052	2	CDS	CDS:EXON_MRNA	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000528165.5:ENST00000530567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr12	57232703	57232773	12902133	0	+	0.585714	(0.53,0.59]	chr12	1005205	1	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr15	74632711	74632789	15375027	0	-	0.589744	(0.53,0.59]	chr15	1215290	1	CDS	CDS:UTR3:EXON_MRNA	EDC3	ENSG00000179151.13	ENST00000315127.9:ENST00000647659.1:ENST00000565602.5:ENST00000426797.7:ENST00000568176.5:ENST00000569606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr15	80186209	80186301	15045782	0	+	0.586957	(0.53,0.59]	chr15	1183756	1	UTR3	UTR3:EXON_MRNA	FAH	ENSG00000103876.14	ENST00000407106.5:ENST00000261755.9:ENST00000682012.1:ENST00000561421.6:ENST00000539156.5:ENST00000646551.1:ENST00000559217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr17	7587425	7587444	16105798	0	+	0.578947	(0.53,0.59]	chr17	1297034	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr2	127989790	127989866	2870045	0	-	0.552632	(0.53,0.59]	chr2	256616	4	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr4	10074810	10074904	5311586	0	-	0.553191	(0.53,0.59]	chr4	427623	6	UTR3	UTR3:EXON_MRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr5	150368808	150368902	6294608	0	+	0.585106	(0.53,0.59]	chr5	491235	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000646961.1:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000643812.1:ENST00000515516.1:ENST00000515035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr7	106869157	106869256	8453636	0	+	0.585859	(0.53,0.59]	chr7	645727	16	CDS	CDS:EXON_MRNA:INTRON	PIK3CG	ENSG00000105851.11	ENST00000440650.6:ENST00000496166.6:ENST00000473541.5:ENST00000359195.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr9	130862853	130862944	10494053	0	+	0.538462	(0.53,0.59]	chr9	792894	2	CDS	CDS:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.82407	4.12843	4.43279	0.0179666	0.0026472	0.0918323	0.0231864
chr14	35292396	35292476	14225374	0	+	0.5625	(0.53,0.59]	chr14	1113810	2	UTR5	UTR5:EXON_MRNA:INTRON	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000627895.2:ENST00000628955.1:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000556167.1:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.21941	4.12823	5.03705	0.00266171	0.00020199200000000001	0.0240332	0.00317801
chr5	181243800	181243858	7009029	0	-	0.672414	(0.59,1]	chr5	537356	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000507000.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1:ENST00000503170.1:ENST00000514318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	983	2	3.98218	4.128135	4.27409	7.74893e-9	7.5538e-11	6.83218e-7	1.06223e-8
chr7	158746203	158746302	9159439	0	-	0.454545	(0.42,0.455]	chr7	699722	21	INTRON	INTRON	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.96788	4.127855	5.28783	0.00109784	2.17539e-5	0.0119666	5.73422e-4
chr2	218278514	218278565	3186687	0	-	0.588235	(0.53,0.59]	chr2	279931	1	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5:ENST00000492966.5:ENST00000466012.5:ENST00000429501.5:ENST00000425694.5:ENST00000476429.5:ENST00000495113.5:ENST00000418569.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	3.92573	4.127725	4.32972	8.62301e-5	7.20871e-6	0.00160749	2.30406e-4
chr2	215338842	215338907	2377177	0	+	0.307692	(0.29,0.33]	chr2	213558	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000446622.5:ENST00000426233.1:ENST00000479093.5:ENST00000467388.1:ENST00000459796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.93737	4.12756	5.31775	0.00826984	1.06766e-5	0.0534766	3.17854e-4
chr1	25454320	25454382	104553	0	+	0.354839	(0.33,0.36]	chr1	12252	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.56949	4.127545	4.6856	5.48184e-4	3.92435e-4	0.00697082	0.00583618
chr6	30723913	30724009	7112217	0	+	0.625	(0.59,1]	chr6	545065	7	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	822	2	3.82545	4.127445	4.42944	6.75402e-9	2.37716e-10	5.51194e-7	3.25164e-8
chr21	33558773	33558867	18101248	0	+	0.340426	(0.33,0.36]	chr21	1534538	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	3.56818	4.1268899999999995	4.6856	3.92435e-4	3.90735e-5	0.00583618	8.43777e-4
chr12	56274776	56274827	13349868	0	-	0.470588	(0.455,0.49]	chr12	1051010	1	CDS	CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000546585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	4.05166	4.126775	4.20189	0.00397662	1.27965e-6	0.0322851	4.92895e-5
chrX	102802943	102803040	18791402	0	+	0.350515	(0.33,0.36]	chrX	1602033	17	INTRON	INTRON	LINC00630	ENSG00000223546.7	ENST00000661018.1:ENST00000431616.5:ENST00000664568.1:ENST00000668536.1:ENST00000440496.5:ENST00000420471.5:ENST00000663114.1:ENST00000658813.1:ENST00000435966.1:ENST00000656628.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	3.15976	4.126675	5.09359	0.00437542	1.35518e-8	0.0340502	1.00853e-6
chrX	119471058	119471142	18841532	0	+	0.392857	(0.39,0.42]	chrX	1605570	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9:ENST00000463551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	344	2	3.50807	4.1264400000000006	4.74481	9.92084e-10	1e-12	1.13545e-7	2.25522e-10
chr2	231080140	231080227	2423271	0	+	0.448276	(0.42,0.455]	chr2	218327	1	CDS	CDS:UTR3:EXON_MRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	3.70487	4.1263950000000005	4.54792	9.66045e-4	1.55091e-5	0.0115185	3.95473e-4
chr14	59495128	59495228	14321450	0	+	0.44	(0.42,0.455]	chr14	1119372	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	JKAMP	ENSG00000050130.18	ENST00000356057.9:ENST00000554754.5:ENST00000557560.5:ENST00000425728.6:ENST00000616435.5:ENST00000555491.5:ENST00000556985.5:ENST00000554271.5:ENST00000554795.1:ENST00000553941.5:ENST00000602482.5:ENST00000554721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.70451	4.126215	4.54792	9.66045e-4	2.72131e-4	0.0115185	0.00404713
chr3	49028494	49028532	4171720	0	-	0.421053	(0.42,0.455]	chr3	350240	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1:ENST00000485500.1:ENST00000496837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	3.09173	4.126175	5.16062	1.40817e-4	9.87381e-9	0.00258348	7.68928e-7
chr7	108510790	108510883	8457619	0	+	0.430108	(0.42,0.455]	chr7	646341	7	EXON_PSEUDO	EXON_PSEUDO	RPL7P32	ENSG00000231006.1	ENST00000457119.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	52	2	3.57226	4.126035	4.67981	5.38444e-4	5.15583e-6	0.00744072	1.58804e-4
chr1	45568104	45568177	174789	0	+	0.547945	(0.53,0.59]	chr1	22655	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000351829.9:ENST00000476957.5:ENST00000497973.5:ENST00000473038.5:ENST00000495913.5:ENST00000487654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.20874	4.12586	5.04298	0.00278422	1.91383e-4	0.0241009	0.0032874
chr16	30225400	30225499	15913254	0	-	0.535354	(0.53,0.59]	chr16	1275086	24	CDS	CDS:EXON_MRNA	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.20874	4.12586	5.04298	0.00278422	1.91383e-4	0.0241009	0.0032874
chrX	101411988	101412088	18786558	0	+	0.58	(0.53,0.59]	chrX	1601435	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	RPL36A-HNRNPH2:HNRNPH2	ENSG00000257529.5:ENSG00000126945.9	ENST00000409338.5:ENST00000409170.3:ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.20874	4.12586	5.04298	0.00278422	1.91383e-4	0.0241009	0.0032874
chr10	104315084	104315180	11678451	0	-	0.583333	(0.53,0.59]	chr10	891073	7	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.38347	4.12585	4.86823	0.00132446	4.35895e-4	0.0138834	0.00623608
chr2	63595455	63595519	1850019	0	+	0.546875	(0.53,0.59]	chr2	175410	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000436321.5:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.38347	4.12585	4.86823	0.00132446	4.35895e-4	0.0138834	0.00623608
chr2	227551958	227552037	2415355	0	+	0.582278	(0.53,0.59]	chr2	217284	1	CDS	CDS:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.38347	4.12585	4.86823	0.00132446	4.35895e-4	0.0138834	0.00623608
chr7	103364142	103364224	8441674	0	+	0.573171	(0.53,0.59]	chr7	645106	1	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.8188	4.125795	4.43279	0.0026472	1.54941e-4	0.0231864	0.0028049
chr1	112671517	112671616	411487	0	+	0.282828	[0,0.29]	chr1	40540	15	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	21	224	2	3.83242	4.12579	4.41916	8.32211e-11	1.56264e-12	1.26881e-8	3.34875e-10
chr12	111516153	111516235	13540498	0	-	0.548781	(0.53,0.59]	chr12	1065332	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000550236.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000481331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.7898	4.12572	5.46164	0.0128364	2.11519e-5	0.0719798	5.06522e-4
chr16	23689859	23689911	15595344	0	+	0.557692	(0.53,0.59]	chr16	1236750	1	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.7898	4.12572	5.46164	0.0128364	2.11519e-5	0.0719798	5.06522e-4
chr2	86492318	86492417	1927465	0	+	0.424242	(0.42,0.455]	chr2	181683	3	UTR3	UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000491383.5:ENST00000470160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	95	2	4.0676	4.125655	4.18371	4.32793e-7	1.00836e-7	2.18091e-5	5.6272e-6
chr5	154875535	154875632	6315261	0	+	0.381443	(0.36,0.39]	chr5	492585	2	UTR3	UTR3:EXON_MRNA	CNOT8	ENSG00000155508.14	ENST00000517876.5:ENST00000403027.6:ENST00000521450.5:ENST00000285896.11:ENST00000521583.5:ENST00000521729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.82613	4.125579999999999	4.42503	0.00133228	1.39565e-4	0.0144372	0.0023599
chr1	43363828	43363915	968538	0	-	0.597701	(0.59,1]	chr1	102048	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr1	204411215	204411311	1457490	0	-	0.604167	(0.59,1]	chr1	146827	19	CDS	CDS:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr10	51698574	51698672	11490827	0	-	0.602041	(0.59,1]	chr10	876946	9	CDS	CDS:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr16	30114362	30114449	15913026	0	-	0.632184	(0.59,1]	chr16	1274993	4	UTR3	UTR3:EXON_MRNA	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000485579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr16	30662783	30662859	15630676	0	+	0.631579	(0.59,1]	chr16	1240354	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000482749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr19	1041901	1041972	17190879	0	+	0.633803	(0.59,1]	chr19	1411421	2	CDS	CDS:EXON_MRNA	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000526885.5:ENST00000263094.11:ENST00000525238.2:ENST00000524850.5:ENST00000531467.5:ENST00000527496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr6	37044859	37044941	7136235	0	+	0.670732	(0.59,1]	chr6	549924	1	EXON_PSEUDO	EXON_PSEUDO	COX6A1P2	ENSG00000226976.3	ENST00000620597.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	3.98751	4.125525	4.26354	0.0301044	0.0134233	0.129773	0.0743429
chr2	170951327	170951392	2206353	0	+	0.353846	(0.33,0.36]	chr2	201832	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000488928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.63456	4.12549	5.61642	0.00707461	2.97369e-6	0.0478528	9.99199e-5
chr17	59697438	59697538	16619189	0	-	0.48	(0.455,0.49]	chr17	1365578	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.49033	4.125405000000001	4.76048	7.92678e-4	3.99985e-4	0.00933379	0.00588767
chr2	107915031	107915116	1979019	0	+	0.458824	(0.455,0.49]	chr2	187757	2	EXON_PSEUDO	EXON_PSEUDO	RPL22P8	ENSG00000237745.1	ENST00000448535.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	3.49033	4.125405000000001	4.76048	7.92678e-4	3.99985e-4	0.00933379	0.00588767
chr1	12126182	12126236	46695	0	+	0.62963	(0.59,1]	chr1	6051	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5:ENST00000413146.6:ENST00000479933.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr1	19086207	19086270	875699	0	-	0.619048	(0.59,1]	chr1	89899	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr16	28735172	28735253	15619339	0	+	0.641975	(0.59,1]	chr16	1238332	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5:ENST00000566086.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr17	30379356	30379449	16185825	0	+	0.677419	(0.59,1]	chr17	1306390	4	CDS	CDS:EXON_MRNA	CPD	ENSG00000108582.12	ENST00000225719.9	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr19	1852888	1852986	17420679	0	-	0.653061	(0.59,1]	chr19	1452979	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KLF16	ENSG00000129911.9	ENST00000250916.6:ENST00000541015.5:ENST00000617223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr4	6709437	6709529	5298421	0	-	0.597826	(0.59,1]	chr4	426829	2	CDS	CDS:EXON_MRNA	MRFAP1L1	ENSG00000178988.11	ENST00000320848.7:ENST00000500563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr5	181238227	181238239	7008954	0	-	0.75	(0.59,1]	chr5	537314	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000514455.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr6	170660227	170660327	7556987	0	+	0.61	(0.59,1]	chr6	576995	198	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	22	2	4.01545	4.125375	4.2353	0.0251889	0.0165254	0.114168	0.0873033
chr9	93564440	93564540	10363308	0	+	0.43	(0.42,0.455]	chr9	780188	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.70273	4.125325	4.54792	0.0215502	9.66045e-4	0.102904	0.0115185
chr8	42342441	42342537	9810755	0	-	0.322917	(0.29,0.33]	chr8	741990	8	EXON_PSEUDO	EXON_PSEUDO	RPL5P23	ENSG00000240395.1	ENST00000496040.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.44697	4.125095	4.80322	0.00101442	2.14303e-4	0.0112862	0.00359478
chr1	75794650	75794737	299190	0	+	0.287356	[0,0.29]	chr1	31293	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000319942.8:ENST00000471759.5:ENST00000459697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.28583	4.12507	4.96431	0.00346525	1.20737e-4	0.0293796	0.00210079
chr1	201007576	201007675	1445393	0	-	0.50505	(0.49,0.53]	chr1	144921	15	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.69037	4.12483	4.55929	0.0226513	0.00116196	0.10505	0.0130851
chr13	29513883	29513982	13945212	0	-	0.515152	(0.49,0.53]	chr13	1094548	46	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.69037	4.12483	4.55929	0.0226513	0.00116196	0.10505	0.0130851
chr17	82850420	82850520	16386366	0	+	0.52	(0.49,0.53]	chr17	1332978	39	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.69037	4.12483	4.55929	0.0226513	0.00116196	0.10505	0.0130851
chr1	207322474	207322567	686273	0	+	0.44086	(0.42,0.455]	chr1	69472	2	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	3.79714	4.124815	4.45249	2.45559e-6	9.32431e-7	9.39733e-5	3.77388e-5
chr4	165046202	165046280	5205545	0	+	0.576923	(0.53,0.59]	chr4	420113	4	EXON_PSEUDO	EXON_PSEUDO	RP11-366M4.17	ENSG00000249617.1	ENST00000508621.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	77	2	4.102	4.124225	4.14645	2.32261e-5	1.01285e-6	6.06413e-4	4.03248e-5
chr7	853408	853478	8093699	0	+	0.6	(0.59,1]	chr7	618439	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.30708	4.1241900000000005	4.9413	0.00252451	0.00191468	0.0226777	0.0190905
chr10	84152911	84153004	11164628	0	+	0.430108	(0.42,0.455]	chr10	848162	7	UTR3	UTR3:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	3.87922	4.124115	4.36901	1.04705e-4	1.02856e-7	0.0020295	5.71137e-6
chr1	182879249	182879329	595100	0	+	0.425	(0.42,0.455]	chr1	61643	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000474446.5:ENST00000485081.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.84538	4.12407	4.40276	0.0017618	1.2691e-4	0.0180053	0.00219756
chr12	133238454	133238549	13165216	0	+	0.421053	(0.42,0.455]	chr12	1029507	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000238443.1	ENST00000459107.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	30	2	3.84538	4.12407	4.40276	0.0017618	1.2691e-4	0.0180053	0.00219756
chr3	184026764	184026863	4622774	0	-	0.454545	(0.42,0.455]	chr3	381686	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.84538	4.12407	4.40276	0.0017618	1.2691e-4	0.0180053	0.00219756
chr1	217850556	217850633	1505245	0	-	0.506494	(0.49,0.53]	chr1	150733	3	EXON_PSEUDO	EXON_PSEUDO	UBBP2	ENSG00000228247.1	ENST00000376781.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr10	79513211	79513309	11148981	0	+	0.510204	(0.49,0.53]	chr10	847459	2	UTR3	UTR3:EXON_MRNA	EIF5AL1	ENSG00000253626.4	ENST00000520547.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr11	65115313	65115394	11982466	0	+	0.493827	(0.49,0.53]	chr11	919884	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TM7SF2	ENSG00000149809.17	ENST00000526809.5:ENST00000279263.14:ENST00000534371.5:ENST00000533766.5:ENST00000529601.5:ENST00000525385.5:ENST00000345348.9:ENST00000531321.5:ENST00000529292.5:ENST00000530650.5:ENST00000529233.5:ENST00000532328.5:ENST00000527968.5:ENST00000528802.1:ENST00000526048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr12	122365540	122365632	13123650	0	+	0.5	(0.49,0.53]	chr12	1024950	4	EXON_PSEUDO	EXON_PSEUDO	RPL21P1	ENSG00000214760.3	ENST00000399532.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr12	123744881	123744972	13128477	0	+	0.516484	(0.49,0.53]	chr12	1026123	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000540368.6:ENST00000674794.1:ENST00000545059.5:ENST00000536426.1:ENST00000675260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr15	90482196	90482281	15100594	0	+	0.505882	(0.49,0.53]	chr15	1188164	1	CDS	CDS:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr16	18529484	18529560	15876580	0	-	0.526316	(0.49,0.53]	chr16	1269167	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000567831.5:ENST00000569051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr17	58345759	58345856	16612601	0	-	0.525773	(0.49,0.53]	chr17	1364733	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUPT4H1:RP5-1171I10.8	ENSG00000213246.7:ENSG00000285897.1	ENST00000581166.5:ENST00000225504.8:ENST00000648873.1:ENST00000577396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr17	61952964	61953038	16628303	0	-	0.527027	(0.49,0.53]	chr17	1366828	1	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr17	82117745	82117844	16711089	0	-	0.50505	(0.49,0.53]	chr17	1378326	36	INTRON	INTRON	CCDC57	ENSG00000176155.19	ENST00000389641.9:ENST00000392347.5:ENST00000665763.1:ENST00000392345.6:ENST00000583593.2:ENST00000419322.6:ENST00000392346.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr18	23551676	23551727	17037475	0	-	0.529412	(0.49,0.53]	chr18	1400596	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000590301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr19	40441589	40441686	17566448	0	-	0.525773	(0.49,0.53]	chr19	1476368	1	CDS	CDS:EXON_MRNA	SERTAD3	ENSG00000167565.13	ENST00000322354.4:ENST00000392028.8:ENST00000599706.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr2	15308284	15308353	2527541	0	-	0.507246	(0.49,0.53]	chr2	227351	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr2	241229210	241229307	3250545	0	-	0.494845	(0.49,0.53]	chr2	286983	21	UTR3	UTR3:EXON_MRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr20	36665045	36665097	17957333	0	-	0.519231	(0.49,0.53]	chr20	1521525	1	CDS	CDS:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr3	146528685	146528758	4498934	0	-	0.493151	(0.49,0.53]	chr3	373864	2	CDS	CDS:EXON_MRNA:INTRON	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000483300.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000490745.5:ENST00000469266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr6	11766273	11766324	7602503	0	-	0.509804	(0.49,0.53]	chr6	579810	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADTRP	ENSG00000111863.13	ENST00000505099.5:ENST00000414691.8:ENST00000512139.5:ENST00000229583.9:ENST00000379415.6:ENST00000506810.1:ENST00000485323.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chrX	50905694	50905780	18698806	0	+	0.511628	(0.49,0.53]	chrX	1595351	4	EXON_PSEUDO	EXON_PSEUDO	H3P44	ENSG00000226881.5	ENST00000475267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.73494	4.124029999999999	4.51312	0.0189345	0.00156636	0.0934721	0.0156889
chr12	4301196	4301295	12704455	0	+	0.363636	(0.36,0.39]	chr12	985544	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.94781	4.12402	5.30023	3.10006e-4	1.38946e-5	0.0044733	3.94563e-4
chr4	80035971	80036032	5484824	0	-	0.47541	(0.455,0.49]	chr4	439602	1	CDS	CDS:EXON_MRNA:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	4.0204	4.12396	4.22752	0.00736097	1.24055e-5	0.0490627	3.28918e-4
chr5	109344704	109344761	6754841	0	-	0.438596	(0.42,0.455]	chr5	518812	1	CDS	CDS:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.36247	4.123775	5.88508	0.0462889	8.1674e-7	0.176878	3.36299e-5
chr10	69097083	69097157	11094093	0	+	0.513514	(0.49,0.53]	chr10	843396	1	CDS	CDS:EXON_MRNA:INTRON	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	3.88887	4.12371	4.35855	9.98984e-5	5.06834e-6	0.00180257	1.7169e-4
chr17	40136035	40136133	16223162	0	+	0.346939	(0.33,0.36]	chr17	1311910	18	UTR3	UTR3:EXON_MRNA	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000339569.9:ENST00000580086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.7655	4.12368	5.48186	0.0175892	7.22374e-6	0.0918323	2.11873e-4
chr11	66276043	66276138	11989564	0	+	0.547368	(0.53,0.59]	chr11	921604	1	CDS	CDS:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.80806	4.123345	4.43863	0.00254763	1.65022e-4	0.0233955	0.00269147
chr15	65564214	65564278	14980028	0	+	0.4375	(0.42,0.455]	chr15	1177579	1	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1:ENST00000624437.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	1	30	2	2.7523	4.12329	5.49428	0.0153283	1.07978e-5	0.0828908	2.9314e-4
chr11	73975580	73975671	12458790	0	-	0.56044	(0.53,0.59]	chr11	968491	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000544615.5:ENST00000545212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.72478	4.1232299999999995	5.52168	0.00324675	1.48967e-5	0.0282494	3.81697e-4
chr1	145935512	145935612	1269945	0	-	0.45	(0.42,0.455]	chr1	125471	22	UTR3	UTR3:EXON_MRNA	LIX1L	ENSG00000271601.4	ENST00000604000.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr1	205620564	205620655	1461630	0	-	0.428571	(0.42,0.455]	chr1	147411	8	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8:ENST00000468523.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr10	16754870	16754929	11393355	0	-	0.423729	(0.42,0.455]	chr10	868503	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr11	61368184	61368277	11968861	0	+	0.430108	(0.42,0.455]	chr11	916930	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM138	ENSG00000149483.12	ENST00000542946.1:ENST00000278826.11:ENST00000507563.6:ENST00000423772.6:ENST00000545420.1:ENST00000451389.6:ENST00000381787.2:ENST00000539776.1:ENST00000543833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr21	14381372	14381457	18163770	0	-	0.435294	(0.42,0.455]	chr21	1542417	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4:ENST00000478035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr4	118751995	118752089	5618131	0	-	0.446809	(0.42,0.455]	chr4	447617	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5:ENST00000514561.5:ENST00000419654.6:ENST00000511033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr8	94509855	94509940	9960197	0	-	0.423529	(0.42,0.455]	chr8	751275	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr8	94510573	94510652	9960205	0	-	0.43038	(0.42,0.455]	chr8	751279	3	CDS	CDS:EXON_MRNA:INTRON	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr8	140527147	140527247	10132114	0	-	0.43	(0.42,0.455]	chr8	760954	71	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr9	128323514	128323586	10478070	0	+	0.430556	(0.42,0.455]	chr9	789860	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COQ4	ENSG00000167113.11	ENST00000609948.1:ENST00000608951.5:ENST00000300452.8:ENST00000372875.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.8515	4.12309	4.39468	0.0119089	0.00240483	0.0686664	0.0217482
chr19	2236823	2236901	17195802	0	+	0.602564	(0.59,1]	chr19	1412778	1	UTR5	UTR5:EXON_MRNA	SF3A2	ENSG00000104897.10	ENST00000221494.10:ENST00000589118.5:ENST00000592839.6:ENST00000592314.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	3.2366	4.123025	5.00945	0.00149725	4.06803e-4	0.0159607	0.00552995
chr5	168517979	168518062	6369362	0	+	0.409639	(0.39,0.42]	chr5	494753	3	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	3.66467	4.1228549999999995	4.58104	3.60066e-4	1.0275e-6	0.00544157	4.08333e-5
chr1	203743294	203743392	669916	0	+	0.5	(0.49,0.53]	chr1	67517	36	UTR3	UTR3:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.35133	4.12269	4.89405	0.00150139	2.57983e-4	0.0152367	0.00419998
chrX	139726541	139726639	19258517	0	-	0.265306	[0,0.29]	chrX	1635793	3	UTR3	UTR3:EXON_MRNA	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000327569.7:ENST00000361648.6:ENST00000433868.5:ENST00000450801.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.82443	4.122665	5.4209	0.0180803	8.29716e-6	0.0920398	2.36305e-4
chr1	1040664	1040736	2255	0	+	0.777778	(0.59,1]	chr1	475	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	2.03921	4.122645	6.20608	0.0371471	4.1102e-6	0.151849	1.31763e-4
chr6	33304466	33304552	7669253	0	-	0.697674	(0.59,1]	chr6	587573	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	220	2	3.70012	4.122605	4.54509	2.23493e-6	1.76874e-7	8.6801e-5	9.15009e-6
chr12	119680424	119680524	13114516	0	+	0.55	(0.53,0.59]	chr12	1023559	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	97	2	4.11371	4.122565	4.13142	9.16965e-7	8.11888e-7	4.11625e-5	3.35153e-5
chr1	207761347	207761446	689878	0	+	0.464646	(0.455,0.49]	chr1	70073	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	225	2	3.66088	4.12247	4.58406	2.10216e-8	2.81419e-12	1.47005e-6	6.11664e-10
chr11	4127108	4127182	11774358	0	+	0.391892	(0.39,0.42]	chr11	901024	2	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.784	4.122425	5.46085	0.00261393	5.81708e-6	0.0230705	1.921e-4
chr5	62388521	62388618	6611628	0	-	0.329897	(0.29,0.33]	chr5	511030	14	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000514605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.31653	4.1221250000000005	4.92772	0.00261621	1.56621e-4	0.0238929	0.00259991
chr8	20167205	20167305	9744339	0	-	0.3	(0.29,0.33]	chr8	736768	17	INTRON	INTRON	SLC18A1	ENSG00000036565.15	ENST00000276373.10:ENST00000265808.11:ENST00000440926.3:ENST00000437980.3:ENST00000517776.5:ENST00000519026.5:ENST00000381608.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.31653	4.1221250000000005	4.92772	0.00261621	1.56621e-4	0.0238929	0.00259991
chr17	46939988	46940083	16247183	0	+	0.473684	(0.455,0.49]	chr17	1316050	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GOSR2:RP11-156P1.2	ENSG00000108433.17:ENSG00000262633.2	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000571841.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000639822.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.99697	4.1221049999999995	5.24724	9.57891e-4	3.09759e-5	0.0107247	7.62166e-4
chr7	92123217	92123315	8922200	0	-	0.489796	(0.455,0.49]	chr7	680649	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	114	2	3.7536	4.1221	4.4906	1.87629e-6	2.18261e-8	7.52075e-5	1.51908e-6
chr1	21846181	21846255	890872	0	-	0.702703	(0.59,1]	chr1	92338	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	146	2	3.67775	4.122075	4.5664	7.2677e-6	6.21388e-6	2.13055e-4	2.03021e-4
chr4	120062034	120062095	5621487	0	-	0.327869	(0.29,0.33]	chr4	448093	2	CDS	CDS:EXON_MRNA:INTRON	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.45373	4.12204	5.79035	0.0156405	7.26161e-7	0.084273700000000007	3.03698e-5
chr8	97725069	97725169	9506390	0	+	0.3	(0.29,0.33]	chr8	722727	5	UTR3	UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.45373	4.12204	5.79035	0.0156405	7.26161e-7	0.084273700000000007	3.03698e-5
chr1	1541672	1541770	827858	0	-	0.581633	(0.53,0.59]	chr1	82516	1	UTR3	UTR3:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	2.27113	4.121825	5.97252	0.0178853	8.30115e-7	0.0918323	3.4056e-5
chr11	112094804	112094887	12136341	0	+	0.518072	(0.49,0.53]	chr11	934906	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	3.47167	4.12181	4.77195	6.95049e-5	2.57118e-7	0.00147069	1.25706e-5
chr3	195781171	195781271	4661078	0	-	0.58	(0.53,0.59]	chr3	385270	25	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.90978	4.121645	5.33351	0.00857883	4.35359e-5	0.0552386	0.00091744700000000005
chr6	26234267	26234367	7647245	0	-	0.55	(0.53,0.59]	chr6	582562	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H1-3	ENSG00000124575.7	ENST00000244534.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.90978	4.121645	5.33351	0.00857883	4.35359e-5	0.0552386	0.00091744700000000005
chr16	56683957	56684049	15679350	0	+	0.630435	(0.59,1]	chr16	1246547	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-343H19.2:MT1X	ENSG00000259827.1:ENSG00000187193.9	ENST00000567563.1:ENST00000394485.5:ENST00000568370.1:ENST00000564974.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	51	2	3.89841	4.12164	4.34487	0.0123678	1.91539e-4	0.0705839	0.00304814
chr14	65901104	65901191	14677268	0	-	0.390805	(0.39,0.42]	chr14	1149216	3	EXON_PSEUDO	EXON_PSEUDO	FTH1P13	ENSG00000258960.1	ENST00000557194.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	68	2	3.76141	4.121605	4.4818	2.14058e-4	3.7253e-8	0.00359478	2.39972e-6
chr3	5178879	5178976	3278247	0	+	0.360825	(0.36,0.39]	chr3	288772	2	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	3.99	4.121445	4.25289	6.1616e-5	1.75858e-8	0.00133408	1.26398e-6
chr3	61742733	61742826	4232428	0	-	0.451613	(0.42,0.455]	chr3	356045	4	EXON_PSEUDO	EXON_PSEUDO	RPL10AP6	ENSG00000226360.5	ENST00000472730.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	79	2	4.01741	4.121325000000001	4.22524	1.2079e-5	1.5443e-7	3.52389e-4	8.13864e-6
chr5	140706128	140706221	6255964	0	+	0.397849	(0.39,0.42]	chr5	487973	5	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	4.007	4.1213049999999996	4.23561	1.16386e-5	1.77795e-6	3.43116e-4	6.48503e-5
chr14	21213038	21213117	14520542	0	-	0.556962	(0.53,0.59]	chr14	1137245	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000555585.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	141	2	3.76445	4.12129	4.47813	1.34475e-6	3.49029e-9	5.6532e-5	3.12471e-7
chr11	32932440	32932540	11899051	0	+	0.41	(0.39,0.42]	chr11	909001	8	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	3.93679	4.121045	4.3053	7.30538e-6	3.23284e-6	2.13219e-4	1.18341e-4
chr6	33417668	33417695	7669563	0	-	0.518519	(0.49,0.53]	chr6	587679	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.29825	4.12094	4.94363	2.3417e-4	0.00019429700000000001	0.00355764	0.00332542
chr1	180175320	180175366	582686	0	+	0.5	(0.49,0.53]	chr1	60527	1	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.68246	4.120875	4.55929	0.00116196	3.06313e-4	0.0130851	0.00442973
chr20	32145311	32145367	17752421	0	+	0.5	(0.49,0.53]	chr20	1498486	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.68246	4.120875	4.55929	0.00116196	3.06313e-4	0.0130851	0.00442973
chr4	25678849	25678934	4762875	0	+	0.517647	(0.49,0.53]	chr4	394068	1	EXON_PSEUDO	EXON_PSEUDO	RPS29P11	ENSG00000242640.1	ENST00000496507.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.68246	4.120875	4.55929	0.00116196	3.06313e-4	0.0130851	0.00442973
chr6	43547607	43547707	7708334	0	-	0.52	(0.49,0.53]	chr6	591523	1	CDS	CDS:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1:ENST00000513451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.68246	4.120875	4.55929	0.00116196	3.06313e-4	0.0130851	0.00442973
chr9	101390465	101390565	10774670	0	-	0.35	(0.33,0.36]	chr9	815646	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPL50	ENSG00000136897.8	ENST00000374865.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.93884	4.12085	5.30286	0.00135211	1.23392e-5	0.0140654	3.58359e-4
chr3	179604786	179604815	3928708	0	+	0.62069	(0.59,1]	chr3	330223	1	UTR5	UTR5:EXON_MRNA	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.61074	4.120794999999999	5.63085	0.025486	8.43355e-5	0.117089	0.0015859
chr8	144360028	144360114	9652288	0	+	0.639535	(0.59,1]	chr8	731964	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	4.00624	4.12077	4.2353	0.0165254	1.12192e-4	0.0873033	0.00199438
chr16	81626495	81626595	15771218	0	+	0.55	(0.53,0.59]	chr16	1255477	44	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.3733	4.120765	4.86823	0.0529193	4.35895e-4	0.18423900000000001	0.00623608
chr15	60349074	60349135	15316709	0	-	0.377049	(0.36,0.39]	chr15	1208916	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	62	2	2.39984	4.12046	5.84108	2.61601e-4	3.0375e-7	0.0039188	1.62555e-5
chr3	49029350	49029426	4171730	0	-	0.697368	(0.59,1]	chr3	350245	1	UTR5	UTR5:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000678177.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677108.1:ENST00000677593.1:ENST00000485500.1:ENST00000496837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	127	2	4.03263	4.12045	4.20827	1.11254e-4	1.67518e-6	0.00213212	6.16435e-5
chr2	42361161	42361259	2616709	0	-	0.714286	(0.59,1]	chr2	235531	1	UTR5	UTR5:EXON_MRNA:INTRON	COX7A2L	ENSG00000115944.15	ENST00000378669.5:ENST00000234301.3:ENST00000464443.5:ENST00000607768.1:ENST00000463055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	102	2	3.39292	4.12042	4.84792	0.00192565	8.93202e-7	0.0191769	3.63493e-5
chr15	40956327	40956419	14884515	0	+	0.543478	(0.53,0.59]	chr15	1169137	7	UTR3	UTR3:EXON_MRNA	CHAC1	ENSG00000128965.13	ENST00000617768.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.11779	4.1204	5.12301	5.11883e-4	1.2852e-4	0.00664583	0.00241206
chr17	1858201	1858282	16402471	0	-	0.518519	(0.49,0.53]	chr17	1335108	3	EXON_PSEUDO	EXON_PSEUDO	AC016292.3	ENSG00000108958.4	ENST00000451056.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.44951	4.120185	4.79086	0.0405223	4.20783e-4	0.153343	0.00611538
chr17	41528147	41528247	16542303	0	-	0.69	(0.59,1]	chr17	1355991	1	CDS_START	CDS_START:CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000455635.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.34171	4.12014	4.89857	0.00234977	0.00182139	0.0222173	0.0176016
chr14	96867098	96867198	14477862	0	+	0.28	[0,0.29]	chr14	1131044	23	EXON_MRNA	EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000681419.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.87835	4.12009	4.36183	0.00170062	1.0775e-4	0.01759	0.00192514
chrX	120469169	120469267	19196463	0	-	0.673469	(0.59,1]	chrX	1632022	1	UTR5	UTR5:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	3.01432	4.119905	5.22549	0.00121259	5.13843e-4	0.0135383	0.00665221
chr22	44168601	44168678	18390899	0	+	0.467532	(0.455,0.49]	chr22	1566039	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1:ENST00000477438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.73142	4.119735	4.50805	0.00122223	2.35261e-4	0.0135383	0.00356397
chr17	81845153	81845222	16709507	0	-	0.565217	(0.53,0.59]	chr17	1377678	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	754	2	2.81295	4.1194749999999996	5.426	4.84496e-6	1e-12	1.66253e-4	2.25522e-10
chr14	58794653	58794747	14315539	0	+	0.510638	(0.49,0.53]	chr14	1119032	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01500:RP11-112J1.1	ENSG00000258583.7:ENSG00000213598.4	ENST00000648996.1:ENST00000480540.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	93	2	3.52514	4.119425	4.71371	4.98361e-5	5.18544e-9	0.0011306	4.38997e-7
chr7	852809	852880	8093692	0	+	0.535211	(0.53,0.59]	chr7	618437	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000464442.5:ENST00000480475.5:ENST00000488628.1:ENST00000457861.1:ENST00000459810.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.67993	4.119265	4.5586	0.00161229	3.22778e-4	0.0169168	0.0046122
chr1	120160456	120160530	1255427	0	-	0.405405	(0.39,0.42]	chr1	123040	2	CDS	CDS:EXON_MRNA	SEC22B	ENSG00000265808.4	ENST00000578049.4:ENST00000618538.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.44923	4.119005	4.78878	0.00105208	4.27222e-4	0.0123035	0.00577513
chr11	74253907	74254007	12016982	0	+	0.47	(0.455,0.49]	chr11	926524	5	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	4.01559	4.118925000000001	4.22226	1.23185e-5	1.68211e-6	3.58356e-4	6.18007e-5
chr22	21623442	21623541	18303196	0	+	0.40404	(0.39,0.42]	chr22	1554195	19	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	3.23394	4.118925	5.00391	9.12714e-5	5.30858e-5	0.00182992	0.00108035
chr21	45468331	45468422	18145461	0	+	0.582418	(0.53,0.59]	chr21	1539676	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	3.75615	4.11883	4.48151	2.16536e-4	2.61211e-6	0.00361336	8.99269e-5
chr16	74462144	74462195	16031095	0	-	0.509804	(0.49,0.53]	chr16	1287276	2	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561481.1:ENST00000563646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.11892	4.1188	5.11868	0.00398244	9.66505e-5	0.0322851	0.00175267
chrX	154792266	154792285	19279952	0	-	0.473684	(0.455,0.49]	chrX	1638778	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.47671	4.118595	4.76048	0.0368644	3.99985e-4	0.145024	0.00588767
chr1	112670527	112670626	411477	0	+	0.444444	(0.42,0.455]	chr1	40540	5	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	23	375	2	3.98924	4.11841	4.24758	1.56661e-11	5.82534e-12	2.60884e-9	1.17108e-9
chr3	116644801	116644901	4379868	0	-	0.35	(0.33,0.36]	chr3	364390	621	INTRON	INTRON	LSAMP	ENSG00000185565.12	ENST00000474851.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	4.10837	4.118385	4.1284	0.00407303	2.58508e-5	0.0324137	5.98505e-4
chr16	66932126	66932189	15987033	0	-	0.587302	(0.53,0.59]	chr16	1282638	2	UTR3	UTR3:EXON_MRNA	CIAO2B	ENSG00000166595.12	ENST00000422424.7:ENST00000568572.5:ENST00000562362.5:ENST00000567511.1:ENST00000563490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.46349	4.1178550000000005	4.77222	9.2216e-4	6.67251e-4	0.0104432	0.00867533
chr5	96783142	96783235	6721169	0	-	0.537634	(0.53,0.59]	chr5	517406	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000514604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	3.46349	4.1178550000000005	4.77222	9.2216e-4	6.67251e-4	0.0104432	0.00867533
chr5	132209137	132209234	6833624	0	-	0.56701	(0.53,0.59]	chr5	522716	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.46349	4.1178550000000005	4.77222	9.2216e-4	6.67251e-4	0.0104432	0.00867533
chr6	27866848	27866948	7649630	0	-	0.54	(0.53,0.59]	chr6	582821	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H1-5	ENSG00000184357.5	ENST00000331442.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.46349	4.1178550000000005	4.77222	9.2216e-4	6.67251e-4	0.0104432	0.00867533
chrX	86161259	86161359	19141877	0	-	0.46	(0.455,0.49]	chrX	1627919	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P29	ENSG00000215093.3	ENST00000416082.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	87	2	2.5019	4.1177600000000005	5.73362	4.55336e-5	1.35346e-6	9.49373e-4	5.67444e-5
chr17	40401003	40401081	16538877	0	-	0.384615	(0.36,0.39]	chr17	1354615	3	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.46497	4.117725	4.77048	0.00105709	2.24861e-7	0.0123035	1.11991e-5
chr2	96267835	96267924	1942109	0	+	0.47191	(0.455,0.49]	chr2	183777	1	CDS	CDS:EXON_MRNA	CIAO1	ENSG00000144021.3	ENST00000488633.2:ENST00000272402.2:ENST00000491394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.87233	4.117699999999999	4.36307	0.00218641	1.08465e-4	0.0208941	0.00193256
chrX	65724636	65724735	18716203	0	+	0.343434	(0.33,0.36]	chrX	1596826	74	INTRON	INTRON	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.46908	4.117665000000001	4.76625	0.00114872	3.84608e-4	0.0130528	0.00531017
chr11	32583797	32583887	11898110	0	+	0.7	(0.59,1]	chr11	908877	1	UTR5	UTR5:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	225	2	4.05665	4.117615000000001	4.17858	2.50041e-6	1.52836e-7	9.53193e-5	8.06807e-6
chr5	96803656	96803741	6721397	0	-	0.494118	(0.49,0.53]	chr5	517485	4	CDS	CDS:UTR5:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5:ENST00000508227.5:ENST00000507154.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.9516	4.1174599999999995	4.28332	0.00338762	6.96459e-5	0.0288632	0.0013446
chr5	151804169	151804248	6299765	0	+	0.35443	(0.33,0.36]	chr5	491954	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	88	2	3.52634	4.117195	4.70805	7.28639e-6	1.83101e-10	2.13219e-4	2.58062e-8
chr15	78546636	78546698	15040572	0	+	0.33871	(0.33,0.36]	chr15	1183228	2	CDS	CDS:EXON_MRNA:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000560099.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559154.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	3.83586	4.117115	4.39837	1.7178e-4	3.65455e-6	0.00302124	1.19215e-4
chr19	39840413	39840464	17563552	0	-	0.588235	(0.53,0.59]	chr19	1475757	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	2.89427	4.116875	5.33948	3.98634e-4	4.08763e-5	0.00546791	9.64741e-4
chrX	49533331	49533415	18694724	0	+	0.511905	(0.49,0.53]	chrX	1594893	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE12C	ENSG00000237671.3	ENST00000420398.2	protein_coding	protein_coding	protein_coding	protein_coding	5	100	2	3.97501	4.11669	4.25837	2.60666e-7	2.122e-7	1.26854e-5	1.19792e-5
chr11	32934337	32934436	11899070	0	+	0.343434	(0.33,0.36]	chr11	909001	27	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	3.34893	4.116680000000001	4.88443	2.22813e-4	8.34031e-8	0.00370775	4.7764e-6
chr6	160096531	160096625	7528881	0	+	0.606383	(0.59,1]	chr6	574950	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.86139	4.11641	4.37143	2.54973e-4	1.58503e-5	0.00417441	4.03494e-4
chr8	11844241	11844339	9699198	0	-	0.438776	(0.42,0.455]	chr8	734804	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	3.0301	4.11639	5.20268	1.85605e-4	3.59669e-5	0.00297242	8.71318e-4
chr19	47229835	47229934	17596407	0	-	0.50505	(0.49,0.53]	chr19	1481601	10	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.15207	4.11634	5.08061	0.00347189	1.00361e-4	0.0286293	0.00196575
chr14	49592235	49592286	14614049	0	-	0.392157	(0.39,0.42]	chr14	1144063	1	EXON_SMALL	EXON_SMALL:INTRON	RPS29:Y_RNA	ENSG00000213741.11:ENSG00000252919.1	ENST00000556230.2:ENST00000557111.5:ENST00000517110.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	1	29	2	2.70591	4.116085	5.52626	0.0185716	7.67816e-6	0.0932453	2.20857e-4
chr16	74462558	74462630	16031100	0	-	0.402778	(0.39,0.42]	chr16	1287280	2	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561481.1:ENST00000563646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.70591	4.116085	5.52626	0.0185716	7.67816e-6	0.0932453	2.20857e-4
chr19	23827654	23827753	17276790	0	+	0.575758	(0.53,0.59]	chr19	1427763	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	5	115	2	3.98864	4.1160499999999995	4.24346	3.43541e-7	2.31578e-7	1.60752e-5	1.29506e-5
chr21	6334397	6334497	18038134	0	+	0.25	[0,0.29]	chr21	1530554	44	INTRON	INTRON	CH507-145C22.1	ENSG00000278903.3	ENST00000624576.3:ENST00000623738.3:ENST00000624165.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	3.6579	4.11603	4.57416	0.0197988	6.75561e-4	0.0983378	0.00873562
chr3	100363430	100363526	4325483	0	-	0.260417	[0,0.29]	chr3	360552	1	UTR3	UTR3:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.6579	4.11603	4.57416	0.0197988	6.75561e-4	0.0983378	0.00873562
chr15	64162986	64163060	15339348	0	-	0.743243	(0.59,1]	chr15	1210890	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2:ENST00000558492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.97802	4.1159099999999995	5.2538	0.00133365	5.85045e-4	0.0139317	0.00793559
chr3	33114455	33114548	3397529	0	+	0.655914	(0.59,1]	chr3	295467	4	CDS	CDS:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.97802	4.1159099999999995	5.2538	0.00133365	5.85045e-4	0.0139317	0.00793559
chr2	3575259	3575346	1616629	0	+	0.62069	(0.59,1]	chr2	160391	1	UTR5	UTR5:EXON_MRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	1053	2	3.51418	4.11559	4.717	3.62969e-8	8.10285e-12	2.58224e-6	1.44379e-9
chr6	30688572	30688660	7658944	0	-	0.511364	(0.49,0.53]	chr6	584179	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.15044	4.115525	5.08061	4.32676e-4	1.00361e-4	0.00583708	0.00196575
chr6	143504167	143504252	8005330	0	-	0.494118	(0.49,0.53]	chr6	611763	4	CDS	CDS:EXON_MRNA:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	3.35841	4.11552	4.87263	1.37225e-4	1.15551e-7	0.00253405	6.3314e-6
chr5	71035676	71035776	6628655	0	-	0.41	(0.39,0.42]	chr5	512252	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GTF2H2	ENSG00000145736.14	ENST00000274400.9:ENST00000519783.5:ENST00000330280.11:ENST00000518898.6:ENST00000517900.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.22662	4.115265	5.00391	0.00257296	9.12714e-5	0.0229363	0.00182992
chr6	27147105	27147128	7104163	0	+	0.391304	(0.39,0.42]	chr6	543291	1	UTR5	UTR5:EXON_MRNA:PRIMIRNA	H2AC12:MIR3143	ENSG00000274997.2:ENSG00000265565.1	ENST00000377459.3:ENST00000584253.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	26	2	3.22662	4.115265	5.00391	0.00257296	9.12714e-5	0.0229363	0.00182992
chr4	22594365	22594450	4753594	0	+	0.529412	(0.49,0.53]	chr4	393436	3	EXON_PSEUDO	EXON_PSEUDO	RP11-10G12.1	ENSG00000244538.1	ENST00000480875.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	54	2	3.60476	4.1152500000000005	4.62574	4.52633e-4	7.86745e-7	0.00642319	3.25904e-5
chr2	75660327	75660426	1894612	0	+	0.363636	(0.36,0.39]	chr2	179770	52	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.02397	4.114765	5.20556	0.00674398	4.46552e-5	0.0461258	9.34801e-4
chr1	114730577	114730648	1239733	0	-	0.43662	(0.42,0.455]	chr1	121390	2	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.87922	4.114545	4.34987	1.04705e-4	5.55486e-6	0.0020295	1.68903e-4
chr10	74082453	74082544	11117272	0	+	0.56044	(0.53,0.59]	chr10	846221	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	4.03453	4.114515	4.1945	4.6e-5	1.72205e-5	9.56296e-4	4.72777e-4
chr12	123597021	123597119	13127191	0	+	0.316327	(0.29,0.33]	chr12	1025792	4	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000543425.1:ENST00000262225.8:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	122	2	4.08916	4.114485	4.13981	1.34284e-7	3.46059e-10	8.07144e-6	4.08851e-8
chr7	92128879	92128932	8922260	0	-	0.509434	(0.49,0.53]	chr7	680671	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	3.23855	4.114445	4.99034	1.6002e-4	5.12488e-5	0.00286408	0.00104999
chr17	48058389	48058485	16253359	0	+	0.604167	(0.59,1]	chr17	1317132	2	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000577411.5:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000580037.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.17889	4.114269999999999	6.04965	0.025085	9.85057e-6	0.116848	2.72926e-4
chr16	68191041	68191133	15714915	0	+	0.445652	(0.42,0.455]	chr16	1251034	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	4.02772	4.114105	4.20049	4.30844e-5	1.49765e-5	0.00100091	3.83096e-4
chr10	74138106	74138192	11575986	0	-	0.430233	(0.42,0.455]	chr10	881710	1	CDS	CDS:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.54838	4.114095	4.67981	5.9986e-4	5.38444e-4	0.0075062	0.00744072
chr9	128696014	128696110	10480940	0	+	0.458333	(0.455,0.49]	chr9	790686	15	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	7	103	2	3.39099	4.114095	4.8372	5.49498e-7	1.24477e-7	2.40268e-5	7.5922e-6
chr12	111448790	111448888	13092085	0	+	0.377551	(0.36,0.39]	chr12	1021116	6	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.49441	4.113935	4.73346	7.81559e-4	3.2963e-4	0.00927662	0.00504024
chr12	103934160	103934241	13056771	0	+	0.395062	(0.39,0.42]	chr12	1017312	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	585	2	3.38431	4.113910000000001	4.84351	3.33284e-8	1e-12	2.40629e-6	2.25522e-10
chr11	46744386	46744486	12383485	0	-	0.49	(0.455,0.49]	chr11	955990	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.85172	4.113905	5.37609	0.010864	2.05373e-5	0.0643837	4.97369e-4
chr19	48968322	48968418	17604709	0	-	0.479167	(0.455,0.49]	chr19	1483492	3	UTR3	UTR3:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.85172	4.113905	5.37609	0.010864	2.05373e-5	0.0643837	4.97369e-4
chr9	122381663	122381747	10452662	0	+	0.488095	(0.455,0.49]	chr9	787068	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.85172	4.113905	5.37609	0.010864	2.05373e-5	0.0643837	4.97369e-4
chr15	57288354	57288454	14950158	0	+	0.32	(0.29,0.33]	chr15	1174949	23	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.02243	4.113855	5.20528	9.33835e-4	2.18753e-5	0.0105624	5.75389e-4
chr3	160495105	160495205	4553036	0	-	0.33	(0.29,0.33]	chr3	376952	2	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.02243	4.113855	5.20528	9.33835e-4	2.18753e-5	0.0105624	5.75389e-4
chr7	103682188	103682261	8965129	0	-	0.438356	(0.42,0.455]	chr7	686353	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.98629	4.11381	4.24133	0.00326918	2.11853e-6	0.0282494	7.50523e-5
chr7	65954200	65954300	8301898	0	+	0.49	(0.455,0.49]	chr7	632919	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.89975	4.11367	5.32759	3.94125e-4	1.92345e-5	0.00541075	5.18397e-4
chr3	4983024	4983118	3277640	0	+	0.542553	(0.53,0.59]	chr3	288720	3	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	3.12943	4.113575	5.09772	4.81557e-4	2.38604e-8	0.00677016	1.64029e-6
chr7	30912198	30912293	8206087	0	+	0.642105	(0.59,1]	chr7	626014	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.38157	4.113225	5.84488	0.00534794	4.10826e-5	0.0392783	9.68079e-4
chr9	35059125	35059188	10638084	0	-	0.555556	(0.53,0.59]	chr9	804504	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	97	2	4.09676	4.1131899999999995	4.12962	3.14727e-5	7.35971e-8	7.72298e-4	4.2952e-6
chr14	53038827	53038927	14632072	0	-	0.41	(0.39,0.42]	chr14	1146209	22	UTR3	UTR3:EXON_MRNA	DDHD1	ENSG00000100523.16	ENST00000395606.5:ENST00000612692.4:ENST00000673822.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.73294	4.11309	4.49324	0.0190864	0.00108192	0.0958835	0.0124943
chr2	189571777	189571841	3082504	0	-	0.390625	(0.39,0.42]	chr2	272329	2	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.73294	4.11309	4.49324	0.0190864	0.00108192	0.0958835	0.0124943
chr2	206120496	206120596	3132921	0	-	0.41	(0.39,0.42]	chr2	276949	58	UTR3	UTR3:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.73294	4.11309	4.49324	0.0190864	0.00108192	0.0958835	0.0124943
chr8	123015149	123015248	10055907	0	-	0.393939	(0.39,0.42]	chr8	756437	21	UTR3	UTR3:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.73294	4.11309	4.49324	0.0190864	0.00108192	0.0958835	0.0124943
chr1	224365934	224365991	728689	0	+	0.403509	(0.39,0.42]	chr1	73633	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	3.24562	4.113025	4.98043	5.84121e-5	4.28317e-8	0.00129108	2.69344e-6
chr1	148105767	148105854	1278196	0	-	0.471264	(0.455,0.49]	chr1	126623	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF11	ENSG00000263956.7	ENST00000614785.4:ENST00000614015.4:ENST00000615281.4:ENST00000682118.1:ENST00000614506.4:ENST00000613531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr11	100666710	100666794	12105778	0	+	0.47619	(0.455,0.49]	chr11	931807	4	EXON_PSEUDO	EXON_PSEUDO	PPIAP43	ENSG00000255059.1	ENST00000527147.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr17	80831621	80831721	16376735	0	+	0.49	(0.455,0.49]	chr17	1331104	80	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr17	82765025	82765117	16385494	0	+	0.456522	(0.455,0.49]	chr17	1332894	6	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr4	66094429	66094526	4865789	0	+	0.463918	(0.455,0.49]	chr4	400369	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-25H12.1:IFITM3P1	ENSG00000249413.2:ENSG00000236562.4	ENST00000508572.1:ENST00000505282.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr6	41909353	41909437	7701732	0	-	0.47619	(0.455,0.49]	chr6	590640	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-973N23.5:MED20	ENSG00000288721.1:ENSG00000124641.16	ENST00000684631.1:ENST00000682596.1:ENST00000683313.1:ENST00000265350.9:ENST00000467535.5:ENST00000482361.1:ENST00000409312.5:ENST00000394251.2:ENST00000409060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr7	128306226	128306326	9058571	0	-	0.49	(0.455,0.49]	chr7	691245	87	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr8	127949338	127949438	9614275	0	+	0.47	(0.455,0.49]	chr8	728598	60	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chrX	71108598	71108695	19106735	0	-	0.463918	(0.455,0.49]	chrX	1625348	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RP5-1091N2.12:IL2RG	ENSG00000285171.1:ENSG00000147168.13	ENST00000644911.1:ENST00000645518.1:ENST00000646106.1:ENST00000646505.1:ENST00000644022.1:ENST00000644708.1:ENST00000645266.1:ENST00000647492.1:ENST00000642473.1:ENST00000374202.7:ENST00000276110.6:ENST00000374188.7:ENST00000512747.3:ENST00000482750.5:ENST00000456850.6:ENST00000464642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.71798	4.113015	4.50805	0.0202679	0.00122223	0.0984041	0.0135383
chr3	32526798	32526898	4110383	0	-	0.42	(0.39,0.42]	chr3	343342	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	3.44923	4.112795	4.77636	0.00105208	2.28159e-7	0.0123035	1.13101e-5
chr5	69174955	69175034	6019342	0	+	0.392405	(0.39,0.42]	chr5	471243	2	CDS	CDS:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.44923	4.112795	4.77636	0.00105208	2.28159e-7	0.0123035	1.13101e-5
chr21	33534578	33534665	18220657	0	-	0.45977	(0.455,0.49]	chr21	1546418	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000497313.5:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000488791.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	88	2	3.78443	4.112605	4.44078	2.6997e-6	1.89864e-7	1.01511e-4	9.73977e-6
chr6	64024865	64024965	7767125	0	-	0.51	(0.49,0.53]	chr6	595970	253	INTRON	INTRON	EYS	ENSG00000188107.15	ENST00000503581.6:ENST00000370621.7:ENST00000398580.3	protein_coding	protein_coding	protein_coding	protein_coding	10	193	2	4.02897	4.112525	4.19608	1.34282e-7	1.14274e-10	8.07144e-6	1.52576e-8
chr4	56460526	56460625	4848735	0	+	0.363636	(0.36,0.39]	chr4	399473	11	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	70	938	2	4.10703	4.11233	4.11763	1e-12	1e-12	2.46312e-10	2.25522e-10
chr11	17228472	17228569	11826485	0	+	0.463918	(0.455,0.49]	chr11	905275	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	NUCB2:RP11-452G18.2	ENSG00000070081.17:ENSG00000197149.5	ENST00000528644.5:ENST00000494359.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	28	2	2.9967	4.11232	5.22794	0.00650423	4.80556e-5	0.0454205	9.91058e-4
chr2	113958344	113958443	2007130	0	+	0.323232	(0.29,0.33]	chr2	190801	10	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.92065	4.112095	5.30354	0.0117842	1.89876e-5	0.0686664	4.64808e-4
chr5	86619352	86619369	6073045	0	+	0.294118	(0.29,0.33]	chr5	476388	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COX7C	ENSG00000127184.13	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1:ENST00000510447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.92065	4.112095	5.30354	0.0117842	1.89876e-5	0.0686664	4.64808e-4
chr1	1785480	1785578	829665	0	-	0.5	(0.49,0.53]	chr1	82929	3	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.76099	4.11201	4.46303	2.00194e-4	2.57025e-6	0.0034021	8.8687100000000007e-05
chr16	75629414	75629477	16039084	0	-	0.507937	(0.49,0.53]	chr16	1288290	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.56183	4.111775	5.66172	0.0261296	3.99372e-6	0.118976	1.28691e-4
chr3	9893765	9893863	3300584	0	+	0.5	(0.49,0.53]	chr3	290136	5	UTR3	UTR3:EXON_MRNA	JAGN1	ENSG00000171135.15	ENST00000489724.2:ENST00000647897.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.56183	4.111775	5.66172	0.0261296	3.99372e-6	0.118976	1.28691e-4
chr1	32170706	32170794	127015	0	+	0.477273	(0.455,0.49]	chr1	15634	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr1	204410161	204410257	1457479	0	-	0.458333	(0.455,0.49]	chr1	146827	8	CDS	CDS:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr11	65174312	65174410	12421731	0	-	0.489796	(0.455,0.49]	chr11	963793	3	EXON_LNCRNA	EXON_LNCRNA	PGAM1P8	ENSG00000255200.1	ENST00000534819.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr12	45852498	45852597	12851702	0	+	0.464646	(0.455,0.49]	chr12	998020	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr12	78064311	78064411	12973336	0	+	0.48	(0.455,0.49]	chr12	1010769	48	INTRON	INTRON	NAV3	ENSG00000067798.16	ENST00000397909.7:ENST00000536525.6:ENST00000644176.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr13	49663056	49663125	14019795	0	-	0.463768	(0.455,0.49]	chr13	1099608	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr14	33929143	33929212	14572130	0	-	0.463768	(0.455,0.49]	chr14	1141870	2	CDS	CDS:EXON_MRNA	EGLN3	ENSG00000129521.15	ENST00000250457.9:ENST00000553215.5:ENST00000556785.1:ENST00000487915.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr15	56094932	56095032	15299184	0	-	0.46	(0.455,0.49]	chr15	1207656	16	CDS	CDS:EXON_MRNA	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr20	36609600	36609695	17777090	0	+	0.473684	(0.455,0.49]	chr20	1501926	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TGIF2-RAB5IF:RAB5IF	ENSG00000259399.1:ENSG00000101084.18	ENST00000558530.1:ENST00000344795.8:ENST00000492721.5:ENST00000483815.5:ENST00000373852.9:ENST00000342422.3:ENST00000639924.1:ENST00000494506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr3	15645290	15645388	3326203	0	+	0.469388	(0.455,0.49]	chr3	292932	11	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	BTD	ENSG00000169814.16	ENST00000427382.2:ENST00000449107.7:ENST00000673620.1:ENST00000303498.10:ENST00000672141.1:ENST00000643237.3:ENST00000672065.1:ENST00000672112.1:ENST00000646371.1:ENST00000672427.1:ENST00000673467.1:ENST00000672760.1:ENST00000437172.6:ENST00000383778.5:ENST00000672892.1:ENST00000671928.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr3	37020314	37020388	3410817	0	+	0.486486	(0.455,0.49]	chr3	296307	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5:ENST00000673889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr4	150302708	150302792	5725834	0	-	0.464286	(0.455,0.49]	chr4	452689	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000515096.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000510157.1:ENST00000508606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr5	138201106	138201172	6860990	0	-	0.469697	(0.455,0.49]	chr5	524945	1	CDS	CDS:UTR3:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000482948.5:ENST00000483961.6:ENST00000511383.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr6	26197250	26197269	7647203	0	-	0.473684	(0.455,0.49]	chr6	582544	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr9	5811181	5811252	10542811	0	-	0.478873	(0.455,0.49]	chr9	799410	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chrY	21841066	21841165	19326668	0	+	0.474747	(0.455,0.49]	chrY	1643028	22	EXON_LNCRNA	EXON_LNCRNA	RP11-400I17.1	ENSG00000286187.1	ENST00000651708.1	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.81275	4.11158	4.41041	0.0138827	0.00218771	0.0760883	0.0202707
chr19	50315088	50315187	17609632	0	-	0.494949	(0.49,0.53]	chr19	1484771	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KCNC3	ENSG00000131398.15	ENST00000477616.2:ENST00000376959.6:ENST00000474951.1:ENST00000670667.1	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	4.06942	4.111415	4.15341	3.44689e-5	5.7246e-7	7.57659e-4	2.75701e-5
chr3	13321667	13321751	4046242	0	-	0.666667	(0.59,1]	chr3	339530	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	184	2	3.28558	4.1114	4.93722	3.5027e-4	1.06899e-8	0.00532165	8.23347e-7
chr17	1344565	1344662	16398371	0	-	0.329897	(0.29,0.33]	chr17	1334230	4	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	77	2	2.60688	4.11134	5.6158	6.9259e-4	7.87047e-11	0.00876781	1.10364e-8
chr1	180889292	180889391	586659	0	+	0.383838	(0.36,0.39]	chr1	60742	54	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.98025	4.111095	4.24194	0.00881716	0.00276729	0.0562439	0.0247437
chr22	36354927	36355027	18498790	0	-	0.39	(0.36,0.39]	chr22	1578303	53	INTRON	INTRON	MYH9	ENSG00000100345.22	ENST00000216181.11:ENST00000401701.1:ENST00000456729.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.98025	4.111095	4.24194	0.00881716	0.00276729	0.0562439	0.0247437
chr3	73018328	73018428	3556218	0	+	0.39	(0.36,0.39]	chr3	309011	23	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.98025	4.111095	4.24194	0.00881716	0.00276729	0.0562439	0.0247437
chr4	13336562	13336643	4721271	0	+	0.382716	(0.36,0.39]	chr4	391938	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	14	2	3.98025	4.111095	4.24194	0.00881716	0.00276729	0.0562439	0.0247437
chr4	152527874	152527974	5739864	0	-	0.38	(0.36,0.39]	chr4	453474	381	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.98025	4.111095	4.24194	0.00881716	0.00276729	0.0562439	0.0247437
chr6	24650887	24650978	7638591	0	-	0.362637	(0.36,0.39]	chr6	581758	1	CDS	CDS:EXON_MRNA	TDP2	ENSG00000111802.14	ENST00000378198.9:ENST00000341060.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.98025	4.111095	4.24194	0.00881716	0.00276729	0.0562439	0.0247437
chr14	58257924	58257998	14311331	0	+	0.472973	(0.455,0.49]	chr14	1118499	1	CDS	CDS:UTR3:EXON_MRNA	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000556321.1:ENST00000553677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	3.73142	4.11101	4.4906	2.35261e-4	1.87629e-6	0.00356397	7.52075e-5
chr4	10441832	10441930	5312133	0	-	0.397959	(0.39,0.42]	chr4	427752	21	UTR3	UTR3:EXON_MRNA	ZNF518B	ENSG00000178163.8	ENST00000326756.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.66467	4.11095	4.55723	0.00117753	3.60066e-4	0.0127276	0.00544157
chr2	9585190	9585285	2508166	0	-	0.389474	(0.36,0.39]	chr2	226349	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	3.60045	4.110935	4.62142	4.13757e-6	7.26179e-7	1.32555e-4	3.39859e-5
chr9	128998150	128998228	10482754	0	+	0.487179	(0.455,0.49]	chr9	791131	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000495726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.24913	4.110855	4.97258	0.00239443	1.84876e-4	0.0225356	0.00296795
chr19	3978083	3978172	17430192	0	-	0.58427	(0.53,0.59]	chr19	1454695	4	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	435	2	3.63326	4.110725	4.58819	5.78746e-9	1e-12	5.2673e-7	2.25522e-10
chr5	172976278	172976374	6387846	0	+	0.520833	(0.49,0.53]	chr5	496169	9	EXON_PSEUDO	EXON_PSEUDO	CTC-308K20.3	ENSG00000253785.1	ENST00000523057.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.94177	4.11069	4.27961	0.0104929	9.03426e-6	0.063428	2.53429e-4
chr6	149378413	149378502	7480747	0	+	0.393258	(0.39,0.42]	chr6	571630	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	2.63229	4.11066	5.58903	7.8066e-4	5.14263e-6	0.00973486	1.58468e-4
chr11	6487062	6487161	11781881	0	+	0.393939	(0.39,0.42]	chr11	901763	25	INTRON	INTRON	CTD-2010I16.2	ENSG00000283977.1	ENST00000639224.1:ENST00000640959.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr13	36949941	36950041	13968594	0	-	0.42	(0.39,0.42]	chr13	1095973	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000486410.2:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000460230.1:ENST00000681581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr14	57208509	57208608	14643691	0	-	0.393939	(0.39,0.42]	chr14	1147167	82	UTR3	UTR3:EXON_MRNA	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000554011.5:ENST00000340918.11:ENST00000555148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr16	69355657	69355749	15994256	0	-	0.402174	(0.39,0.42]	chr16	1284130	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-343C2.9:TERF2	ENSG00000260371.1:ENSG00000132604.11	ENST00000563634.1:ENST00000254942.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr19	49781946	49782017	17372599	0	+	0.408451	(0.39,0.42]	chr19	1443676	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr3	52270711	52270809	4182773	0	-	0.408163	(0.39,0.42]	chr3	352667	1	CDS	CDS:UTR5:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000469000.5:ENST00000463624.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr7	157367427	157367483	8637103	0	+	0.392857	(0.39,0.42]	chr7	659811	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000412557.5:ENST00000453383.5:ENST00000634080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr9	113408317	113408416	10807730	0	-	0.40404	(0.39,0.42]	chr9	819089	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.93996	4.11062	4.28128	0.00841622	0.00342611	0.054565	0.0283456
chr18	57550315	57550414	17137065	0	-	0.474747	(0.455,0.49]	chr18	1407062	61	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	4.03349	4.11053	4.18757	4.13044e-5	4.43488e-7	9.71332e-4	1.99826e-5
chr19	58550453	58550553	17413365	0	+	0.66	(0.59,1]	chr19	1451223	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	10	360	2	3.00134	4.110415	5.21949	2.31527e-5	1.04127e-10	6.05631e-4	1.40718e-8
chr16	30068817	30068903	15628420	0	+	0.581395	(0.53,0.59]	chr16	1239786	1	CDS	CDS:UTR3:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566846.5:ENST00000562679.5:ENST00000564688.1:ENST00000566146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	619	2	3.88164	4.11005	4.33846	1.45376e-11	4.65916e-12	2.4349e-9	9.64493e-10
chr16	28981900	28981978	15621967	0	+	0.628205	(0.59,1]	chr16	1238807	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-231C14.10:SPNS1:RP11-264B17.3	ENSG00000288630.1:ENSG00000169682.18:ENSG00000261067.7	ENST00000675058.1:ENST00000565975.5:ENST00000311008.16:ENST00000323081.12:ENST00000334536.12:ENST00000569969.5:ENST00000352260.11:ENST00000566059.5:ENST00000564476.1:ENST00000561868.1:ENST00000568829.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	45	2	3.11647	4.109965	5.10346	0.00535979	8.40506e-4	0.0406564	0.00981548
chr11	65129821	65129915	12421656	0	-	0.680851	(0.59,1]	chr11	963738	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	SYVN1:MIR6751	ENSG00000162298.19:ENSG00000284489.1	ENST00000530451.1:ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000527765.1:ENST00000610479.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	2	60	2	2.67996	4.109825	5.53969	0.00470478	1.29608e-4	0.0363963	0.00223885
chr6	33304127	33304217	7669248	0	-	0.588889	(0.53,0.59]	chr6	587569	1	CDS	CDS:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	154	2	3.89563	4.1095500000000005	4.32347	9.05923e-8	1.39207e-8	5.73229e-6	1.03246e-6
chr11	57409174	57409257	12394446	0	-	0.53012	(0.53,0.59]	chr11	958634	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	154	2	3.97008	4.10955	4.24902	4.79082e-8	2.66322e-8	3.2809e-6	1.80102e-6
chr11	64230770	64230854	11979591	0	+	0.678571	(0.59,1]	chr11	918846	2	UTR5	UTR5:EXON_MRNA	DNAJC4	ENSG00000110011.13	ENST00000321685.7:ENST00000628077.2:ENST00000355040.8:ENST00000536006.5:ENST00000321460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.84557	4.1094	4.37323	0.0410704	0.00990413	0.163285	0.061536
chr12	120163164	120163259	13579390	0	-	0.621053	(0.59,1]	chr12	1068706	2	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.84557	4.1094	4.37323	0.0410704	0.00990413	0.163285	0.061536
chr15	22823809	22823891	14810563	0	+	0.597561	(0.59,1]	chr15	1162094	2	CDS	CDS:UTR3:EXON_MRNA	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000337435.9:ENST00000559448.5:ENST00000557930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.84557	4.1094	4.37323	0.0410704	0.00990413	0.163285	0.061536
chr16	3728012	3728110	15831132	0	-	0.632653	(0.59,1]	chr16	1263727	3	CDS	CDS:EXON_MRNA	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.84557	4.1094	4.37323	0.0410704	0.00990413	0.163285	0.061536
chr16	16131788	16131861	15568654	0	+	0.671233	(0.59,1]	chr16	1232842	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.84557	4.1094	4.37323	0.0410704	0.00990413	0.163285	0.061536
chr22	39875379	39875470	18372060	0	+	0.736264	(0.59,1]	chr22	1563474	2	EXON_PSEUDO	EXON_PSEUDO	UQCRFS1P1	ENSG00000226085.3	ENST00000435169.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	22	2	3.84557	4.1094	4.37323	0.0410704	0.00990413	0.163285	0.061536
chr8	144317965	144318017	10148349	0	-	0.519231	(0.49,0.53]	chr8	763471	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DGAT1	ENSG00000185000.12	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5:ENST00000524844.1:ENST00000531896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	71	2	3.90194	4.109305	4.31667	9.11374e-5	1.62178e-7	0.00182992	8.48798e-6
chr1	167415639	167415710	522925	0	+	0.605634	(0.59,1]	chr1	56153	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chr19	12924150	12924207	17472064	0	-	0.684211	(0.59,1]	chr19	1463331	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5:ENST00000593021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chr21	43983492	43983592	18137647	0	+	0.71	(0.59,1]	chr21	1538560	12	UTR3	UTR3:EXON_MRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chr22	19037473	19037572	18430036	0	-	0.606061	(0.59,1]	chr22	1570339	13	UTR3	UTR3:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chr3	47850020	47850120	3456957	0	+	0.62	(0.59,1]	chr3	301458	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:PRIMIRNA	DHX30:MIR1226	ENSG00000132153.15:ENSG00000221585.1	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000408658.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chr8	144106508	144106591	9650342	0	+	0.590361	(0.59,1]	chr8	731543	3	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAF1	ENSG00000179632.10	ENST00000322428.10:ENST00000534585.5:ENST00000532522.5:ENST00000527058.1	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chrX	135051487	135051580	19246093	0	-	0.666667	(0.59,1]	chrX	1634621	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8A	ENSG00000203950.7	ENST00000370775.3:ENST00000518153.1:ENST00000520964.1:ENST00000522309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	22	2	3.87333	4.1091	4.34487	0.0348991	0.0123678	0.141505	0.0705839
chr3	47676628	47676705	4162663	0	-	0.493506	(0.49,0.53]	chr3	348380	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	77	2	3.41035	4.108325000000001	4.8063	1.62733e-5	1.96248e-7	4.52905e-4	9.99962e-6
chr4	118815634	118815726	5618784	0	-	0.608696	(0.59,1]	chr4	447692	3	CDS	CDS:UTR3:UTR5:EXON_MRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5:ENST00000503683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.77418	4.10827	5.44236	0.0160729	2.02004e-4	0.0860154	0.00317801
chr1	44739874	44739932	173766	0	+	0.465517	(0.455,0.49]	chr1	22299	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	2.07467	4.108265	6.14186	0.00905778	6.15079e-8	0.0574177	4.07335e-6
chr7	128570419	128570508	9059376	0	-	0.483146	(0.455,0.49]	chr7	691466	3	EXON_PSEUDO	EXON_PSEUDO	RP11-212P7.1	ENSG00000213280.2	ENST00000393266.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	117	2	3.31789	4.10818	4.89847	2.55552e-6	6.58625e-10	8.83735e-5	7.94279e-8
chr1	51794471	51794540	1016336	0	-	0.463768	(0.455,0.49]	chr1	105207	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000497358.1:ENST00000475310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	1.96875	4.108155	6.24756	0.0480352	4.80845e-8	0.180552	2.97443e-6
chr2	99399509	99399605	1954229	0	+	0.354167	(0.33,0.36]	chr2	185614	2	UTR3	UTR3:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11:ENST00000470023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	3.48968	4.10783	4.72598	1.46345e-5	3.063e-7	4.12451e-4	1.45748e-5
chr3	153164142	153164242	3818941	0	+	0.33	(0.29,0.33]	chr3	325742	10	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	9	106	2	3.79083	4.107725	4.42462	2.11162e-8	3.13595e-9	1.61147e-6	2.84176e-7
chr16	2820954	2821031	15495164	0	+	0.532468	(0.53,0.59]	chr16	1227876	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000570629.5:ENST00000570594.5:ENST00000574813.5:ENST00000577043.1:ENST00000575199.1:ENST00000574265.1:ENST00000575739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	3.02054	4.107615	5.19469	0.00577011	1.0578e-8	0.0426551	8.1539200000000005e-07
chr9	121181495	121181573	10835890	0	-	0.448718	(0.42,0.455]	chr9	820921	1	CDS	CDS:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.97371	4.10752	4.24133	0.00326918	6.07552e-5	0.0282494	0.00121305
chrX	153700936	153700975	19273612	0	-	0.487179	(0.455,0.49]	chrX	1637348	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	3.57525	4.107515	4.63978	6.94032e-4	5.24878e-4	0.00876781	0.00677371
chrX	78114015	78114087	18747023	0	+	0.555556	(0.53,0.59]	chrX	1599819	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	241	2	3.59884	4.107514999999999	4.61619	2.4911e-8	1.23988e-10	1.85102e-6	1.64102e-8
chr7	150331587	150331681	8614705	0	+	0.393617	(0.39,0.42]	chr7	657695	6	UTR3	UTR3:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.32278	4.10748	4.89218	1.6518e-4	2.95704e-5	0.0029267300000000002	6.70125e-4
chr21	46284999	46285092	18281845	0	-	0.473118	(0.455,0.49]	chr21	1551083	11	CDS	CDS:EXON_MRNA	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000426537.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.83859	4.10734	5.37609	0.00215336	2.05373e-5	0.0208395	4.97369e-4
chr19	3548194	3548267	17427600	0	-	0.671233	(0.59,1]	chr19	1454109	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MFSD12	ENSG00000161091.14	ENST00000355415.7:ENST00000588918.5:ENST00000389395.7:ENST00000589995.1:ENST00000585814.1:ENST00000592652.1:ENST00000591878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.9891200000000002	4.107305	5.22549	0.00823979	5.13843e-4	0.0540283	0.00665221
chr9	131233487	131233541	10496734	0	+	0.611111	(0.59,1]	chr9	793397	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000476004.5:ENST00000528406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	3.01792	4.107200000000001	5.19648	0.00111911	7.35336e-4	0.0121894	0.00921643
chr20	31538178	31538228	17748486	0	+	0.44	(0.42,0.455]	chr20	1497845	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000498035.5:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	116	2	3.60057	4.1071	4.61363	2.55064e-7	9.88178e-9	1.24895e-5	8.42808e-7
chr12	129113217	129113294	13153769	0	+	0.493506	(0.49,0.53]	chr12	1027745	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5:ENST00000508925.6:ENST00000540739.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	30	2	2.8671	4.107	5.3469	0.0100489	2.75121e-5	0.0623334	6.30607e-4
chr19	39385120	39385211	17325908	0	+	0.505495	(0.49,0.53]	chr19	1434775	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SAMD4B	ENSG00000179134.15	ENST00000596368.1:ENST00000596271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.8671	4.107	5.3469	0.0100489	2.75121e-5	0.0623334	6.30607e-4
chr3	47670657	47670717	4162601	0	-	0.5	(0.49,0.53]	chr3	348368	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.8671	4.107	5.3469	0.0100489	2.75121e-5	0.0623334	6.30607e-4
chr9	136211357	136211452	10888845	0	-	0.515789	(0.49,0.53]	chr9	826974	2	CDS	CDS:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10:ENST00000455222.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.8671	4.107	5.3469	0.0100489	2.75121e-5	0.0623334	6.30607e-4
chr16	74485856	74485917	16031351	0	-	0.47541	(0.455,0.49]	chr16	1287345	2	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	3.46389	4.1069700000000005	4.75005	9.14164e-4	2.8854e-7	0.0110519	1.38392e-5
chr10	95237835	95237924	11629774	0	-	0.539326	(0.53,0.59]	chr10	885722	4	UTR3	UTR3:EXON_MRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.87438	4.10693	5.33948	1.55101e-4	4.08763e-5	0.00258327	9.64741e-4
chr20	45425649	45425726	17801721	0	+	0.545455	(0.53,0.59]	chr20	1505126	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PIGT:MIR6812	ENSG00000124155.18:ENSG00000273555.1	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000638714.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000640194.1:ENST00000545755.3:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000638927.1:ENST00000638277.1:ENST00000638241.1:ENST00000640253.1:ENST00000638691.1:ENST00000424705.2:ENST00000640123.1:ENST00000619733.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	32	2	3.02054	4.10671	5.19288	0.00577011	9.22873e-5	0.0426551	0.0016906
chr1	244706182	244706280	804413	0	+	0.346939	(0.33,0.36]	chr1	80056	5	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.87349	4.106225	4.33896	0.00182033	4.76264e-6	0.0183913	1.49263e-4
chr21	34096276	34096374	18104979	0	+	0.469388	(0.455,0.49]	chr21	1534981	11	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	76	2	3.07942	4.10612	5.13282	1.46687e-4	1.20095e-8	0.0026854	9.06312e-7
chr7	100620767	100620856	8952159	0	-	0.617977	(0.59,1]	chr7	684150	5	UTR3	UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	3.20238	4.1059149999999995	5.00945	0.00149725	4.79306e-4	0.0159607	0.00629006
chr3	33018447	33018504	4111156	0	-	0.54386	(0.53,0.59]	chr3	343445	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5:ENST00000467571.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.6522	4.1054	4.5586	0.00161229	2.31822e-5	0.0169168	5.49766e-4
chr5	138575237	138575318	6862572	0	-	0.740741	(0.59,1]	chr5	525266	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	196	2	3.96358	4.10537	4.24716	9.20327e-6	1.66289e-7	2.83402e-4	8.67062e-6
chr1	12579352	12579412	862205	0	-	0.566667	(0.53,0.59]	chr1	87520	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	DHRS3:MIR6730	ENSG00000162496.9:ENSG00000276830.1	ENST00000616661.5:ENST00000464917.5:ENST00000622213.1:ENST00000430996.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	2	59	2	3.69065	4.1050450000000005	4.51944	3.04331e-4	2.00484e-6	0.00472028	7.16652e-5
chr18	9536332	9536431	16753984	0	+	0.646465	(0.59,1]	chr18	1381612	5	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	3.41536	4.10493	4.7945	0.0031766	0.00164655	0.0279054	0.0163443
chr1	1054447	1054499	2441	0	+	0.673077	(0.59,1]	chr1	586	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.84748	4.104755	5.36203	0.0124539	3.74697e-4	0.0712518	0.00560631
chr12	101394085	101394182	13506198	0	-	0.505155	(0.49,0.53]	chr12	1061580	11	UTR3	UTR3:EXON_MRNA	ARL1	ENSG00000120805.14	ENST00000261636.13	protein_coding	protein_coding	protein_coding	protein_coding	6	116	2	3.98936	4.104565	4.21977	3.36571e-7	3.31127e-8	1.7708e-5	2.16744e-6
chr11	5299921	5300020	12241085	0	-	0.383838	(0.36,0.39]	chr11	946132	77	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	3.96717	4.1045549999999995	4.24194	0.00276729	6.17763e-5	0.0247437	0.00122919
chr5	54222312	54222412	6579293	0	-	0.37	(0.36,0.39]	chr5	509126	500	INTRON	INTRON	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	3.96717	4.1045549999999995	4.24194	0.00276729	6.17763e-5	0.0247437	0.00122919
chr14	102040597	102040673	14495798	0	+	0.565789	(0.53,0.59]	chr14	1133234	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1:ENST00000556499.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.5393	4.10433	4.66936	0.00103174	6.46017e-4	0.0121443	0.00799743
chr7	149191042	149191132	9125458	0	-	0.533333	(0.53,0.59]	chr7	697062	1	EXON_PSEUDO	EXON_PSEUDO	RP4-800G7.1	ENSG00000239719.1	ENST00000461005.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	74	2	4.04414	4.103985	4.16383	0.00659193	1.4954e-7	0.0454205	7.9385e-6
chr21	43094470	43094563	18271563	0	-	0.569892	(0.53,0.59]	chr21	1549530	1	CDS	CDS:UTR3:EXON_MRNA	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000478282.1:ENST00000471250.5:ENST00000486519.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.0289	4.10398	6.17906	0.0373899	1.81157e-7	0.146698	1.05195e-5
chr15	43756648	43756707	14896391	0	+	0.40678	(0.39,0.42]	chr15	1171267	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDIA3	ENSG00000167004.13	ENST00000469684.1:ENST00000300289.10:ENST00000434494.5:ENST00000446523.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	133	2	2.71916	4.103925	5.48869	2.11218e-4	1.84541e-12	0.00357316	3.90674e-10
chr1	225412453	225412549	1528170	0	-	0.541667	(0.53,0.59]	chr1	152810	1	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	135	2	4.0781	4.10386	4.12962	1.11222e-7	7.35971e-8	6.89972e-6	4.2952e-6
chr3	100748250	100748342	3637799	0	+	0.51087	(0.49,0.53]	chr3	311886	2	CDS	CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	106	2	3.36911	4.10372	4.83833	2.16178e-5	1.63658e-9	5.71712e-4	1.62532e-7
chr1	40070907	40070979	151968	0	+	0.444444	(0.42,0.455]	chr1	19038	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1:ENST00000494114.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.95538	4.1037	4.25202	6.68846e-5	1.07036e-5	0.00142352	2.92107e-4
chr20	44511288	44511368	17982115	0	-	0.45	(0.42,0.455]	chr20	1523402	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.95538	4.1037	4.25202	6.68846e-5	1.07036e-5	0.00142352	2.92107e-4
chr11	78411451	78411551	12480288	0	-	0.41	(0.39,0.42]	chr11	970906	470	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.59744	4.10351	5.60958	0.00572981	2.11003e-6	0.0417368	8.25026e-5
chr3	31617001	31617075	3392294	0	+	0.418919	(0.39,0.42]	chr3	295044	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	67	2	3.3592	4.10342	4.84764	2.70719e-5	1.2868e-7	6.90257e-4	6.93987e-6
chr8	129545437	129545536	10086214	0	-	0.363636	(0.36,0.39]	chr8	758267	349	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	3.00115	4.1033550000000005	5.20556	0.0012486	4.46552e-5	0.0137762	9.34801e-4
chr3	48748883	48748983	4170023	0	-	0.47	(0.455,0.49]	chr3	350020	24	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13:ENST00000454963.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.40664	4.103325	5.80001	0.0123662	1.35407e-6	0.0705839	5.16241e-5
chr18	9914175	9914256	16755716	0	+	0.802469	(0.59,1]	chr18	1381747	3	UTR5	UTR5:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	184	2	2.84406	4.1033	5.36254	1.62715e-4	2.75961e-8	0.00290162	1.86044e-6
chr1	1228535	1228603	826486	0	-	0.617647	(0.59,1]	chr1	81985	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2:ENST00000459994.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.97118	4.1032399999999996	4.2353	0.0165254	1.3379e-4	0.0873033	0.00229039
chr3	14443734	14443798	3320397	0	+	0.546875	(0.53,0.59]	chr3	292209	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.87264	4.1030750000000005	5.33351	0.00168899	4.35359e-5	0.0175515	0.00091744700000000005
chr19	36143063	36143128	17308764	0	+	0.507692	(0.49,0.53]	chr19	1432233	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000591041.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000592354.5:ENST00000586963.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	29	2	3.52637	4.103045	4.67972	6.94757e-4	6.68602e-4	0.00876781	0.00820018
chr3	139359269	139359362	4479480	0	-	0.516129	(0.49,0.53]	chr3	372212	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000502734.2:ENST00000676700.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.52637	4.103045	4.67972	6.94757e-4	6.68602e-4	0.00876781	0.00820018
chr7	6588616	6588713	8114202	0	+	0.505155	(0.49,0.53]	chr7	620473	1	CDS	CDS:EXON_MRNA	ZDHHC4	ENSG00000136247.15	ENST00000396713.6:ENST00000396707.6:ENST00000405731.7:ENST00000335965.11:ENST00000396709.5:ENST00000396706.2:ENST00000474738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.52637	4.103045	4.67972	6.94757e-4	6.68602e-4	0.00876781	0.00820018
chr1	234607676	234607764	1558281	0	-	0.568182	(0.53,0.59]	chr1	155935	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7:ENST00000491430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	4.04528	4.10277	4.16026	4.28524e-5	6.52435e-7	9.98851e-4	2.7837e-5
chr1	205790069	205790166	1462464	0	-	0.525773	(0.49,0.53]	chr1	147533	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.60116	4.10259	5.60402	0.0056515	5.78803e-6	0.0422191	1.75119e-4
chr2	70276828	70276923	1878769	0	+	0.315789	(0.29,0.33]	chr2	177453	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PCYOX1	ENSG00000116005.12	ENST00000433351.7:ENST00000264441.9	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.62683	4.102475	4.57812	6.18968e-4	9.55291e-7	0.00822794	3.84721e-5
chr12	64721649	64721705	13378811	0	-	0.410714	(0.39,0.42]	chr12	1054207	2	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000537823.1:ENST00000540196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.49701	4.101965	5.70692	0.0339607	2.36087e-6	0.141431	8.27472e-5
chr12	110296598	110296649	13085394	0	+	0.411765	(0.39,0.42]	chr12	1020478	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.49701	4.101965	5.70692	0.0339607	2.36087e-6	0.141431	8.27472e-5
chr17	50381917	50382014	16585112	0	-	0.402062	(0.39,0.42]	chr17	1363112	8	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.49701	4.101965	5.70692	0.0339607	2.36087e-6	0.141431	8.27472e-5
chr3	48600759	48600840	4168718	0	-	0.555556	(0.53,0.59]	chr3	349584	2	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000480561.5:ENST00000415995.5:ENST00000460105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	3.33569	4.10196	4.86823	4.35895e-4	1.57373e-4	0.00623608	0.00260854
chr6	32115738	32115838	7664391	0	-	0.66	(0.59,1]	chr6	585968	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	45	2	2.92097	4.101905	5.28284	0.0102634	4.04404e-4	0.0628742	0.00550292
chr5	138924621	138924710	6247993	0	+	0.505618	(0.49,0.53]	chr5	486818	2	CDS	CDS:UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000521368.5:ENST00000521387.1:ENST00000519489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.72252	4.10185	5.48118	0.0161474	1.24248e-5	0.0860154	3.28918e-4
chr17	63594082	63594180	16317595	0	+	0.357143	(0.33,0.36]	chr17	1323671	51	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	3.03552	4.10175	5.16798	0.0012034	4.80331e-5	0.0134762	9.91058e-4
chr2	128145802	128145884	2060037	0	+	0.512195	(0.49,0.53]	chr2	193260	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7:ENST00000488439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.38097	4.10157	5.82217	0.0425419	1.36598e-6	0.167547	5.18684e-5
chr1	109322931	109323026	1219566	0	-	0.547368	(0.53,0.59]	chr1	118962	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.515	4.101555	5.68811	0.0292633	5.40688e-6	0.129773	1.64762e-4
chr8	108217333	108217396	10002456	0	-	0.365079	(0.36,0.39]	chr8	754170	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	100	2	3.42029	4.101415	4.78254	1.93842e-7	1.76769e-7	1.10775e-5	9.14869e-6
chr11	33709037	33709136	12344203	0	-	0.383838	(0.36,0.39]	chr11	953994	62	UTR3	UTR3:EXON_MRNA:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.84089	4.1014	5.36191	0.0128123	1.79406e-5	0.0719798	4.45904e-4
chr6	2317565	2317664	7012613	0	+	0.555556	(0.53,0.59]	chr6	537661	102	INTRON	INTRON	GMDS-DT	ENSG00000250903.9	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000664738.1:ENST00000532124.6:ENST00000654526.1:ENST00000670895.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000534441.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000532564.7:ENST00000654970.1:ENST00000534160.1	lncRNA	lncRNA	lncRNA	lncRNA	10	232	2	3.71259	4.10131	4.49003	4.12107e-7	2.56291e-11	2.09487e-5	4.0259e-9
chr2	187466451	187466548	3070164	0	-	0.278351	[0,0.29]	chr2	271827	24	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.47088	4.10128	4.73168	0.0015572	3.88478e-4	0.0165415	0.00534839
chr12	69589484	69589551	12943442	0	+	0.343284	(0.33,0.36]	chr12	1008976	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000551620.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	3.07605	4.100865	5.12568	6.95237e-5	1.01535e-8	0.00147069	7.85795e-7
chr19	17404171	17404189	17495799	0	-	0.333333	(0.33,0.36]	chr19	1467253	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2:ENST00000533098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.36959	4.100785	4.83198	0.0014168	1.88689e-4	0.0145694	0.0032588
chr7	107203417	107203515	8982967	0	-	0.346939	(0.33,0.36]	chr7	687283	22	UTR3	UTR3:EXON_MRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.36959	4.100785	4.83198	0.0014168	1.88689e-4	0.0145694	0.0032588
chr12	123350341	123350441	13595654	0	-	0.48	(0.455,0.49]	chr12	1071140	1	CDS_START	CDS_START:CDS:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.69053	4.10048	5.51043	0.0182983	9.08728e-6	0.0925808	2.53877e-4
chr6	67889042	67889141	7784151	0	-	0.484848	(0.455,0.49]	chr6	596229	22	EXON_LNCRNA	EXON_LNCRNA	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	20	334	2	3.74302	4.10034	4.45766	5.24929e-10	1.04539e-12	6.50318e-8	2.34695e-10
chr11	77813801	77813901	12475299	0	-	0.34	(0.33,0.36]	chr11	970449	1	SS3_PROX	SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	3.3227	4.100175	4.87765	0.00222616	2.2423e-4	0.0211992	0.00344776
chr2	38482708	38482804	1748008	0	+	0.552083	(0.53,0.59]	chr2	169990	10	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	283	2	3.26614	4.10017	4.9342	4.56956e-7	1e-12	2.28612e-5	2.25522e-10
chr12	120127385	120127478	13578980	0	-	0.526882	(0.49,0.53]	chr12	1068517	3	UTR3	UTR3:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr13	49131215	49131294	13730162	0	+	0.518987	(0.49,0.53]	chr13	1081591	2	CDS	CDS:EXON_MRNA	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr16	21837540	21837638	15889971	0	-	0.5	(0.49,0.53]	chr16	1271456	29	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1:ENST00000165086.8:ENST00000545367.5:ENST00000542133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr17	58346245	58346313	16612606	0	-	0.5	(0.49,0.53]	chr17	1364734	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUPT4H1:RP5-1171I10.8	ENSG00000213246.7:ENSG00000285897.1	ENST00000581166.5:ENST00000225504.8:ENST00000648873.1:ENST00000577396.5:ENST00000581204.1:ENST00000581540.5:ENST00000580947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr19	58314880	58314978	17412347	0	+	0.510204	(0.49,0.53]	chr19	1450968	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CTD-3138B18.4:ZNF8-ERVK3-1:ERVK3-1	ENSG00000283515.1:ENSG00000267216.1:ENSG00000142396.10	ENST00000637233.1:ENST00000591325.1:ENST00000413518.5:ENST00000427361.5:ENST00000590505.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr8	21989002	21989083	9221957	0	+	0.493827	(0.49,0.53]	chr8	704993	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000518808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr9	108900775	108900875	10786623	0	-	0.53	(0.49,0.53]	chr9	816591	4	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr9	128946069	128946163	10866502	0	-	0.5	(0.49,0.53]	chr9	824002	4	CDS	CDS:EXON_MRNA	DOLK	ENSG00000175283.8	ENST00000372586.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chrX	29613645	29613745	18637180	0	+	0.5	(0.49,0.53]	chrX	1590466	389	INTRON	INTRON	IL1RAPL1	ENSG00000169306.10	ENST00000378993.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chrX	47214793	47214829	18686927	0	+	0.5	(0.49,0.53]	chrX	1593283	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	4.07719	4.0999099999999995	4.12263	0.0074411	0.00591451	0.0492519	0.0427941
chr14	60154011	60154065	14658013	0	-	0.37037	(0.36,0.39]	chr14	1147890	2	CDS	CDS:EXON_MRNA	DHRS7	ENSG00000100612.14	ENST00000557185.6:ENST00000216500.9:ENST00000536410.6:ENST00000554101.5:ENST00000557137.1:ENST00000556502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.63115	4.0998850000000004	5.56862	0.0245975	4.90567e-6	0.114841	1.526e-4
chr16	75631692	75631773	16039114	0	-	0.469136	(0.455,0.49]	chr16	1288310	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	3.09445	4.099489999999999	5.10453	6.1765e-4	1.5372e-8	0.00822794	1.1222e-6
chr1	109411010	109411061	1220463	0	-	0.54902	(0.53,0.59]	chr1	119079	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	3.64032	4.0994600000000005	4.5586	0.00161229	3.4163e-6	0.0169168	1.12474e-4
chr2	112659575	112659668	2001883	0	+	0.44086	(0.42,0.455]	chr2	190042	5	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	3.71365	4.099435	4.48522	2.63375e-4	2.15617e-6	0.00427022	7.62296e-5
chr16	22534909	22535008	15591475	0	+	0.575758	(0.53,0.59]	chr16	1236299	13	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	3.74542	4.09938	4.45334	2.30148e-4	3.13332e-6	0.00352524	1.15746e-4
chr21	34095787	34095885	18104974	0	+	0.408163	(0.39,0.42]	chr21	1534981	6	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	68	2	2.95786	4.099375	5.24089	0.00138212	4.38152e-9	0.0149186	3.79596e-7
chr7	65979726	65979818	8834575	0	-	0.576087	(0.53,0.59]	chr7	674606	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1:ENST00000478118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	3.75615	4.099349999999999	4.44255	2.16536e-4	3.41603e-6	0.00361336	1.12474e-4
chr16	165027	165091	15480689	0	+	0.734375	(0.59,1]	chr16	1224166	1	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3:ENST00000496585.1	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	20	716	2	3.99354	4.09928	4.20502	6.71285e-9	9.88229e-10	5.48219e-7	1.13228e-7
chr1	34983843	34983921	936108	0	-	0.525641	(0.49,0.53]	chr1	98346	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-244H3.5:RP11-244H3.4:TMEM35B	ENSG00000284773.1:ENSG00000271741.1:ENSG00000243749.1	ENST00000417456.1:ENST00000487874.1:ENST00000373337.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.68499	4.099055	4.51312	0.00156636	2.9991e-4	0.0156889	0.00472028
chr1	170900177	170900277	1364774	0	-	0.37	(0.36,0.39]	chr1	139377	351	INTRON	INTRON	RP1-45C12.1	ENSG00000231424.3	ENST00000669750.1:ENST00000670085.1:ENST00000664920.1:ENST00000653116.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr11	61310604	61310697	12404000	0	-	0.387097	(0.36,0.39]	chr11	960205	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr11	83214815	83214911	12041400	0	+	0.385417	(0.36,0.39]	chr11	928595	19	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD42	ENSG00000137494.14	ENST00000533342.6:ENST00000393389.7:ENST00000260047.10:ENST00000526731.5:ENST00000531895.5:ENST00000393392.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr2	135099380	135099480	2080186	0	+	0.39	(0.36,0.39]	chr2	195101	53	INTRON	INTRON	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr4	105181167	105181267	5025453	0	+	0.37	(0.36,0.39]	chr4	409062	330	INTRON	INTRON	TET2	ENSG00000168769.14	ENST00000305737.6:ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9:ENST00000504042.5:ENST00000413648.2:ENST00000505801.1:ENST00000514870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr8	9772723	9772823	9192886	0	+	0.37	(0.36,0.39]	chr8	702346	3	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr9	71684617	71684714	10686986	0	-	0.360825	(0.36,0.39]	chr9	808599	14	UTR3	UTR3:EXON_MRNA	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5:ENST00000538669.1:ENST00000377066.9:ENST00000542935.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.77302	4.099024999999999	4.42503	0.0162599	0.00133228	0.0866586	0.0144372
chr1	91716637	91716708	1164336	0	-	0.507042	(0.49,0.53]	chr1	114920	2	CDS	CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	3.73494	4.098985	4.46303	0.0189345	2.57025e-6	0.0934721	8.8687100000000007e-05
chr7	29064147	29064234	8744933	0	-	0.436782	(0.42,0.455]	chr7	667255	2	CDS	CDS:EXON_MRNA:INTRON	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.36247	4.0989	5.83533	0.0462889	1.15767e-6	0.176878	4.52486e-5
chr1	226361266	226361362	1533013	0	-	0.385417	(0.36,0.39]	chr1	153416	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	248	2	3.57037	4.09889	4.62741	5.97966e-9	1e-12	4.9909e-7	2.46312e-10
chr7	10933435	10933535	8678209	0	-	0.28	[0,0.29]	chr7	663708	16	UTR3	UTR3:EXON_MRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000482299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	3.77445	4.098875	4.4233	2.37823e-5	3.05074e-6	6.17999e-4	1.02351e-4
chr6	37174759	37174855	7136301	0	+	0.34375	(0.33,0.36]	chr6	549953	8	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	65	917	2	3.79415	4.09876	4.40337	1.5461e-12	1e-12	3.62324e-10	2.25522e-10
chr4	7773290	7773389	4712691	0	+	0.525253	(0.49,0.53]	chr4	390956	12	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	2.99849	4.09866	5.19883	0.00630123	6.30063e-5	0.0445415	0.00124286
chr7	117221922	117221992	8480947	0	+	0.4	(0.39,0.42]	chr7	647738	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000465641.5:ENST00000464020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.4261	4.09858	4.77106	0.00107164	3.03764e-4	0.0118238	0.00472028
chr5	132209234	132209331	6833625	0	-	0.463918	(0.455,0.49]	chr5	522716	2	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.68903	4.09854	4.50805	0.00122223	1.71879e-5	0.0135383	4.32994e-4
chr21	32269036	32269117	18213042	0	-	0.419753	(0.39,0.42]	chr21	1545410	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MIS18A	ENSG00000159055.4	ENST00000290130.4	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.48908	4.098	5.70692	0.0101318	2.36087e-6	0.0626311	8.27472e-5
chr3	13330546	13330634	4046338	0	-	0.534091	(0.53,0.59]	chr3	339564	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.72478	4.097995	5.47121	0.00324675	9.37257e-10	0.0282494	9.91786e-8
chr1	219980806	219980857	1510791	0	-	0.45098	(0.42,0.455]	chr1	150990	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	3.79881	4.097785	4.39676	1.65328e-4	8.14648e-8	0.0029267300000000002	4.6939e-6
chr11	5341267	5341362	12241505	0	-	0.473684	(0.455,0.49]	chr11	946157	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	128	2	3.61899	4.09765	4.57631	7.30786e-7	9.17783e-10	3.41098e-5	9.75916e-8
chr2	132255378	132255477	2878626	0	-	0.525253	(0.49,0.53]	chr2	257829	22	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	4	98	2	3.29825	4.097535	4.89682	0.00019429700000000001	9.41684e-10	0.00332542	9.95263e-8
chr7	73571188	73571264	8854573	0	-	0.592105	(0.59,1]	chr7	676030	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000488915.1:ENST00000426966.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	3.56392	4.09749	4.63106	0.00537945	8.86707e-4	0.0406564	0.0101815
chr11	62852082	62852182	12411556	0	-	0.45	(0.42,0.455]	chr11	961813	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	26	426	2	4.04573	4.097305	4.14888	4.14027e-11	2.38864e-12	6.80937e-9	4.88485e-10
chr1	113114696	113114786	413569	0	+	0.477778	(0.455,0.49]	chr1	40831	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	4.0204	4.097235	4.17407	0.00736097	1.754e-5	0.0490627	4.38078e-4
chr2	219214440	219214492	3191207	0	-	0.480769	(0.455,0.49]	chr2	280822	2	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000494639.5:ENST00000496984.5:ENST00000492953.5:ENST00000417678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	4.0204	4.097235	4.17407	0.00736097	1.754e-5	0.0490627	4.38078e-4
chr16	24215607	24215706	15599243	0	+	0.262626	[0,0.29]	chr16	1236920	9	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	3.75027	4.097135	4.444	4.9515e-6	2.45502e-7	1.69269e-4	1.20788e-5
chr1	203707008	203707079	669532	0	+	0.380282	(0.36,0.39]	chr1	67432	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr1	236599482	236599553	1568725	0	-	0.366197	(0.36,0.39]	chr1	157162	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6:ENST00000483073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr15	65502740	65502836	14979675	0	+	0.385417	(0.36,0.39]	chr15	1177519	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000252217.1	ENST00000516408.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr16	16019019	16019119	15567498	0	+	0.37	(0.36,0.39]	chr16	1232692	20	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr17	42313419	42313516	16547415	0	-	0.371134	(0.36,0.39]	chr17	1357253	2	UTR3	UTR3:EXON_MRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr3	69833396	69833496	3546785	0	+	0.38	(0.36,0.39]	chr3	308550	540	INTRON	INTRON	MITF	ENSG00000187098.17	ENST00000352241.9:ENST00000642352.1:ENST00000495741.1:ENST00000429090.5:ENST00000433517.5:ENST00000472437.5:ENST00000448226.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr5	104274777	104274877	6135549	0	+	0.38	(0.36,0.39]	chr5	479691	1695	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr6	107951087	107951187	7882381	0	-	0.37	(0.36,0.39]	chr6	603448	212	INTRON	INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	4.0322	4.096814999999999	4.16143	0.00588589	0.00486719	0.0427941	0.0366328
chr9	112262516	112262599	10803319	0	-	0.60241	(0.59,1]	chr9	818465	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	3.05674	4.096765	5.13679	9.4094e-4	9.28022e-4	0.0111748	0.0106352
chr16	540022	540104	15482791	0	+	0.451219	(0.42,0.455]	chr16	1224613	3	INTRON	INTRON	CAPN15	ENSG00000103326.12	ENST00000219611.7:ENST00000562370.5:ENST00000568988.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.79881	4.096745	4.39468	0.00240483	1.65328e-4	0.0217482	0.0029267300000000002
chr11	66646215	66646299	11991562	0	+	0.464286	(0.455,0.49]	chr11	922216	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	3.81624	4.096585	4.37693	1.48205e-4	4.5365e-6	0.00269793	1.42727e-4
chr3	33021565	33021655	4111190	0	-	0.477778	(0.455,0.49]	chr3	343451	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5:ENST00000467571.5:ENST00000473477.1:ENST00000482097.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	3.81624	4.096585	4.37693	1.48205e-4	4.5365e-6	0.00269793	1.42727e-4
chr7	130178464	130178527	9063269	0	-	0.460317	(0.455,0.49]	chr7	692161	2	CDS	CDS:EXON_MRNA:INTRON	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000467599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.81624	4.096585	4.37693	1.48205e-4	4.5365e-6	0.00269793	1.42727e-4
chr6	122444943	122445043	7923729	0	-	0.34	(0.33,0.36]	chr6	606802	17	UTR3	UTR3:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.70185	4.0963899999999995	5.49093	0.00121183	3.50796e-6	0.0129756	1.26658e-4
chr5	144162217	144162308	6881777	0	-	0.417582	(0.39,0.42]	chr5	527215	1	CDS	CDS:EXON_MRNA	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5:ENST00000519064.5	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	3.93001	4.09636	4.26271	3.15326e-6	1.52201e-8	1.05314e-4	1.2157e-6
chr17	28554990	28555061	16485707	0	-	0.577465	(0.53,0.59]	chr17	1347688	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.35511	4.09621	5.8373100000000004	0.0445399	2.06883e-6	0.172163	7.35008e-5
chr8	144791430	144791495	10150946	0	-	0.584615	(0.53,0.59]	chr8	764127	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RPL8:MIR6850	ENSG00000161016.18:ENSG00000283764.1	ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5:ENST00000612162.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	14	289	2	4.0302	4.096209999999999	4.16222	6.4984e-10	4.27075e-10	7.85044e-8	4.93701e-8
chr14	22876753	22876818	14175072	0	+	0.507692	(0.49,0.53]	chr14	1110447	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000551466.1:ENST00000470660.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	4.06942	4.096025	4.12263	0.00591451	3.44689e-5	0.0427941	7.57659e-4
chr2	167941108	167941180	2999044	0	-	0.555556	(0.53,0.59]	chr2	265475	1	EXON_LNCRNA	EXON_LNCRNA	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2:ENST00000654994.1	lncRNA	lncRNA	lncRNA	lncRNA	5	118	2	3.4326	4.09585	4.7591	1.4648e-5	4.61883e-9	4.12508e-4	3.97687e-7
chr3	13386340	13386407	4046927	0	-	0.507463	(0.49,0.53]	chr3	339700	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	3.60476	4.0957550000000005	4.58675	4.52633e-4	1.05095e-6	0.00642319	4.17035e-5
chr3	136330026	136330098	3763161	0	+	0.402778	(0.39,0.42]	chr3	321906	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.93737	4.09556	4.25375	7.80292e-5	1.03195e-5	0.00162998	2.84226e-4
chr5	78139747	78139846	6653262	0	-	0.414141	(0.39,0.42]	chr5	513977	101	INTRON	INTRON	AP3B1	ENSG00000132842.14	ENST00000255194.11:ENST00000519295.5:ENST00000517561.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	3.8267	4.095555	4.36441	4.74002e-6	7.19721e-7	1.63674e-4	3.019e-5
chr11	760133	760193	11758754	0	+	0.566667	(0.53,0.59]	chr11	898424	1	CDS	CDS:UTR3:EXON_MRNA	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	88	2	3.25217	4.0955	4.93883	4.79919e-5	8.67024e-8	0.00109351	4.94425e-6
chr14	102016921	102016999	14495515	0	+	0.628205	(0.59,1]	chr14	1133120	3	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000645114.2:ENST00000643764.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.99438	4.09543	5.19648	0.00776449	7.35336e-4	0.050813	0.00921643
chr6	31687641	31687740	7661715	0	-	0.606061	(0.59,1]	chr6	584964	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000475742.5:ENST00000468205.5:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000490209.5:ENST00000474007.5:ENST00000471644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	4.07389	4.095305	4.11672	0.0222273	7.9402e-5	0.105595	0.00150391
chr9	122383508	122383590	10452681	0	+	0.621951	(0.59,1]	chr9	787074	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	4.07389	4.095305	4.11672	0.0222273	7.9402e-5	0.105595	0.00150391
chr2	128121198	128121298	2059783	0	+	0.45	(0.42,0.455]	chr2	193212	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.05889	4.09529	5.13169	0.00524205	8.60227e-5	0.0399155	0.00160731
chr4	183713024	183713119	5258810	0	+	0.421053	(0.42,0.455]	chr4	422619	5	UTR3	UTR3:EXON_MRNA	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000511955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.05889	4.09529	5.13169	0.00524205	8.60227e-5	0.0399155	0.00160731
chrX	77841245	77841320	19129103	0	-	0.426667	(0.42,0.455]	chrX	1626868	1	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.05889	4.09529	5.13169	0.00524205	8.60227e-5	0.0399155	0.00160731
chr22	35838609	35838708	18495455	0	-	0.515152	(0.49,0.53]	chr22	1577878	18	INTRON	INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000359369.8:ENST00000416721.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	163	2	3.3814	4.095185000000001	4.80897	5.85972e-7	1.0124e-10	2.81107e-5	1.37329e-8
chr6	119189736	119189809	7919429	0	-	0.657534	(0.59,1]	chr6	606489	2	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.44238	4.09515	4.74792	0.00158239	1.6813e-6	0.0167793	6.18007e-5
chr6	116278318	116278417	7908896	0	-	0.434343	(0.42,0.455]	chr6	605657	36	UTR3	UTR3:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	3.79103	4.094984999999999	4.39894	8.61353e-6	3.61951e-6	2.43348e-4	1.29307e-4
chr12	56275995	56276050	13349885	0	-	0.527273	(0.49,0.53]	chr12	1051017	1	CDS	CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000552331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	70	2	3.90194	4.094875	4.28781	9.11374e-5	2.05323e-7	0.00182992	1.04036e-5
chr22	20952576	20952673	18300209	0	+	0.556701	(0.53,0.59]	chr22	1553647	29	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	129	2	3.52777	4.0947	4.66163	1.76168e-6	1.08822e-8	7.12838e-5	8.34238e-7
chr14	64442262	64442332	14344061	0	+	0.428571	(0.42,0.455]	chr14	1121355	1	CDS	CDS:EXON_MRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000556771.5:ENST00000553405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.27707	4.0946	4.91213	0.00207325	1.75074e-4	0.0194849	0.00306313
chr10	74121932	74122031	11575813	0	-	0.40404	(0.39,0.42]	chr10	881667	18	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	3.4128	4.0945800000000006	4.77636	1.8582e-5	2.28159e-7	5.04916e-4	1.13101e-5
chr1	434346	434446	821972	0	-	0.54	(0.53,0.59]	chr1	81335	541	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	33	2	3.75615	4.094469999999999	4.43279	0.0026472	2.16536e-4	0.0231864	0.00361336
chr7	151213756	151213855	9129916	0	-	0.555556	(0.53,0.59]	chr7	697850	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.75615	4.094469999999999	4.43279	0.0026472	2.16536e-4	0.0231864	0.00361336
chrX	153948550	153948649	19275564	0	-	0.363636	(0.36,0.39]	chrX	1637875	11	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	3.86626	4.094455	4.32265	6.3224e-6	6.18583e-6	2.02643e-4	1.88366e-4
chrX	47205947	47206030	18686821	0	+	0.542169	(0.53,0.59]	chrX	1593231	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	3.39705	4.0943249999999995	4.7916	1.10308e-4	2.73039e-7	0.00211768	1.31828e-5
chr1	30732759	30732856	915549	0	-	0.484536	(0.455,0.49]	chr1	95861	4	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	4.07302	4.094215	4.11541	7.49578e-7	9.40261e-8	3.48685e-5	5.29866e-6
chr12	56160111	56160148	12898540	0	+	0.513514	(0.49,0.53]	chr12	1004360	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000552297.5:ENST00000549017.5:ENST00000549566.5:ENST00000547703.5:ENST00000550697.6:ENST00000547649.5:ENST00000536128.5:ENST00000548725.5:ENST00000547408.5:ENST00000551589.5:ENST00000550639.1:ENST00000548400.5:ENST00000549392.5:ENST00000548293.5:ENST00000546845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	119	2	4.04776	4.094060000000001	4.14036	1.30295e-6	8.35094e-9	5.52593e-5	6.6412e-7
chr5	41919059	41919158	5952047	0	+	0.343434	(0.33,0.36]	chr5	466512	4	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.57153	4.093975	5.61642	0.00330025	2.97369e-6	0.028478	9.99199e-5
chr5	40835185	40835222	6552973	0	-	0.621622	(0.59,1]	chr5	507748	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000509877.5:ENST00000504562.1:ENST00000508493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	99	3734	2	3.47409	4.093435	4.71278	1.14584e-8	1e-12	9.53659e-7	2.25522e-10
chr1	42926612	42926709	966973	0	-	0.474227	(0.455,0.49]	chr1	101864	14	UTR3	UTR3:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	187	2	4.01826	4.093365	4.16847	5.03594e-9	6.30179e-10	4.64198e-7	6.93109e-8
chr10	71834371	71834438	11563405	0	-	0.61194	(0.59,1]	chr10	880025	1	CDS	CDS:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	6	250	2	3.3887	4.09323	4.79776	4.68905e-5	2.88315e-9	0.00107286	2.6408e-7
chr15	41031928	41032028	15233157	0	-	0.6	(0.59,1]	chr15	1198884	38	INTRON	INTRON	INO80	ENSG00000128908.17	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000616814.4:ENST00000559995.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.44238	4.0930800000000005	4.74378	0.00312942	0.00158239	0.0264364	0.0167793
chr1	21878576	21878663	891260	0	-	0.609195	(0.59,1]	chr1	92541	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000480900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	175	2	2.30623	4.09304	5.87985	0.0170607	6.01291e-10	0.0896731	6.66179e-8
chr1	11964714	11964785	45394	0	+	0.591549	(0.59,1]	chr1	5775	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000470133.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	129	2	3.86139	4.092795000000001	4.3242	2.54973e-4	7.86825e-7	0.00417441	3.25904e-5
chr6	100136463	100136563	7297873	0	+	0.57	(0.53,0.59]	chr6	561790	5	EXON_PSEUDO	EXON_PSEUDO	PRDX2P4	ENSG00000213177.3	ENST00000447134.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	73	2	3.74289	4.09272	4.44255	1.27332e-5	3.41603e-6	3.68625e-4	1.12474e-4
chr18	47841726	47841826	17109810	0	-	0.39	(0.36,0.39]	chr18	1405054	329	UTR3	UTR3:EXON_MRNA	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000586040.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.58637	4.092535	4.5987	9.0208e-4	5.84377e-4	0.0102618	0.00793559
chr1	160352129	160352206	496739	0	+	0.519481	(0.49,0.53]	chr1	53469	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5:ENST00000435149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	3.1011	4.09224	5.08338	5.69237e-4	2.00613e-8	0.00778538	1.40889e-6
chr12	98598521	98598612	13036945	0	+	0.483516	(0.455,0.49]	chr12	1015009	1	CDS	CDS:UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1:ENST00000547444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	233	2	3.39317	4.09215	4.79113	5.10283e-7	1e-12	2.51556e-5	2.25522e-10
chr2	135852850	135852915	2898036	0	-	0.384615	(0.36,0.39]	chr2	258512	2	CDS	CDS:EXON_MRNA:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.46497	4.092115	4.71926	0.00105709	5.29682e-4	0.0123035	0.006804
chr18	46095080	46095147	17103923	0	-	0.402985	(0.39,0.42]	chr18	1404397	2	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	81	2	1.99951	4.092085	6.18466	8.1458e-4	2.37277e-8	0.00956457	1.77828e-6
chr1	205088394	205088492	1459087	0	-	0.397959	(0.39,0.42]	chr1	147068	24	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.19588	4.092065	4.98825	0.00321212	1.62756e-4	0.0280721	0.00266622
chr2	170966630	170966730	2206514	0	+	0.44	(0.42,0.455]	chr2	201863	6	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	3.78713	4.091945	4.39676	9.02026e-6	8.14648e-8	2.78052e-4	4.6939e-6
chr17	63765993	63766075	16634877	0	-	0.402439	(0.39,0.42]	chr17	1367620	2	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000584112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.56097	4.0916250000000005	4.62228	6.12149e-4	7.53778e-7	0.00818575	3.14118e-5
chr12	31281453	31281550	13279792	0	-	0.350515	(0.33,0.36]	chr12	1041229	10	UTR3	UTR3:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.65992	4.09129	4.52266	8.34989e-4	3.45596e-4	0.0102956	0.00486237
chr15	43195035	43195133	14895102	0	+	0.336735	(0.33,0.36]	chr15	1170890	3	UTR3	UTR3:EXON_MRNA	CCNDBP1	ENSG00000166946.14	ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000565296.5:ENST00000568507.5:ENST00000444658.7:ENST00000565958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.65992	4.09129	4.52266	8.34989e-4	3.45596e-4	0.0102956	0.00486237
chr3	17158135	17158233	4059101	0	-	0.336735	(0.33,0.36]	chr3	341127	11	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.65992	4.09129	4.52266	8.34989e-4	3.45596e-4	0.0102956	0.00486237
chr9	69716854	69716953	10674871	0	-	0.333333	(0.33,0.36]	chr9	808211	75	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.68275	4.0912749999999996	4.4998	2.69528e-5	1.74876e-6	6.88144e-4	6.39864e-5
chr11	47424428	47424491	12386613	0	-	0.507937	(0.49,0.53]	chr11	956872	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5:ENST00000527906.5:ENST00000526993.1:ENST00000531653.5:ENST00000528362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.7546	4.0912500000000005	4.4279	0.00196987	2.09468e-4	0.0193972	0.00327655
chr21	34095982	34096080	18104976	0	+	0.510204	(0.49,0.53]	chr21	1534981	8	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	65	2	3.92528	4.0912500000000005	4.25722	1.00699e-5	3.34795e-6	3.03291e-4	1.10631e-4
chr22	19064920	19064993	18430323	0	-	0.643836	(0.59,1]	chr22	1570382	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000473832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	142	2	3.38886	4.090935	4.79301	4.08624e-5	1.60221e-6	8.76602e-4	6.53758e-5
chr2	112647652	112647738	2001754	0	+	0.430233	(0.42,0.455]	chr2	190013	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	103	2	3.62852	4.0907	4.55288	6.81906e-7	2.12083e-8	3.21299e-5	1.48013e-6
chr12	6522827	6522914	12713462	0	+	0.551724	(0.53,0.59]	chr12	986570	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000538600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.71318	4.0904	5.46762	0.00340745	1.97761e-5	0.0283456	5.29643e-4
chr15	57287454	57287554	14950149	0	+	0.34	(0.33,0.36]	chr15	1174949	14	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.83586	4.09035	4.34484	1.7178e-4	5.33265e-6	0.00302124	1.63127e-4
chr3	53885825	53885879	4190553	0	-	0.555556	(0.53,0.59]	chr3	354058	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SELENOK	ENSG00000113811.11	ENST00000495461.6:ENST00000541726.5:ENST00000488746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.65894	4.09031	5.52168	0.0193255	1.48967e-5	0.0943643	3.81697e-4
chr12	54523890	54523956	12893915	0	+	0.515152	(0.49,0.53]	chr12	1003176	2	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr12	108701123	108701218	13531053	0	-	0.505263	(0.49,0.53]	chr12	1063994	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000547170.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr16	47083121	47083220	15928967	0	-	0.494949	(0.49,0.53]	chr16	1277673	56	UTR3	UTR3:EXON_MRNA	NETO2	ENSG00000171208.10	ENST00000562435.6:ENST00000303155.9:ENST00000562559.5:ENST00000564667.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr18	23535468	23535545	17037296	0	-	0.493506	(0.49,0.53]	chr18	1400538	1	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000591107.6:ENST00000586150.5:ENST00000269228.10:ENST00000588867.1:ENST00000591051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr20	13442250	13442350	17905039	0	-	0.5	(0.49,0.53]	chr20	1515450	67	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr22	41599116	41599215	18519994	0	-	0.515152	(0.49,0.53]	chr22	1581314	12	UTR3	UTR3:EXON_MRNA	DESI1	ENSG00000100418.8	ENST00000263256.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr3	9893004	9893095	3300576	0	+	0.527473	(0.49,0.53]	chr3	290134	2	CDS	CDS:UTR3:EXON_MRNA	JAGN1	ENSG00000171135.15	ENST00000489724.2:ENST00000647897.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr3	51986604	51986661	3476541	0	+	0.508772	(0.49,0.53]	chr3	304002	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABHD14A-ACY1:ACY1	ENSG00000114786.16:ENSG00000243989.9	ENST00000636085.1:ENST00000463721.5:ENST00000486081.6:ENST00000636646.1:ENST00000637778.1:ENST00000463937.1:ENST00000497128.1:ENST00000636942.1:ENST00000637696.1:ENST00000636089.1:ENST00000637130.1:ENST00000635951.1:ENST00000636826.1:ENST00000635946.1:ENST00000635937.1:ENST00000637563.1:ENST00000637025.1:ENST00000635952.1:ENST00000636718.1:ENST00000637222.1:ENST00000636490.1:ENST00000637978.1:ENST00000637730.1:ENST00000637512.1:ENST00000635785.1:ENST00000636660.1:ENST00000637461.1:ENST00000637209.1:ENST00000636880.1:ENST00000476351.5:ENST00000476854.5:ENST00000491318.5:ENST00000494103.5:ENST00000636556.1:ENST00000404366.7:ENST00000637349.1:ENST00000637460.1:ENST00000636358.2:ENST00000635797.1:ENST00000465121.5:ENST00000469863.1:ENST00000636047.1:ENST00000635941.1:ENST00000637251.1:ENST00000638136.1:ENST00000464587.2:ENST00000638096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr9	33624551	33624643	10236154	0	+	0.521739	(0.49,0.53]	chr9	769679	4	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.8967	4.0900099999999995	4.28332	0.0128791	0.00338762	0.0725185	0.0288632
chr4	56459371	56459438	4848723	0	+	0.447761	(0.42,0.455]	chr4	399471	1	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.68545	4.089865	5.49428	0.00135767	1.07978e-5	0.0146849	2.9314e-4
chr12	57822508	57822607	13358224	0	-	0.545455	(0.53,0.59]	chr12	1053218	27	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.71181	4.089715	5.46762	3.99651e-4	1.97761e-5	0.0054764	5.29643e-4
chr7	149003893	149003972	9124733	0	-	0.594937	(0.59,1]	chr7	696954	1	CDS	CDS:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	2	109	2	3.11647	4.089715	5.06296	0.00535979	2.18275e-7	0.0406564	1.09179e-5
chr1	160340180	160340237	1329215	0	-	0.421053	(0.42,0.455]	chr1	136121	1	CDS	CDS:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000541366.1:ENST00000545266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.77666	4.08971	4.40276	0.0017618	1.85215e-4	0.0180053	0.00296795
chr11	57417747	57417817	12394538	0	-	0.614286	(0.59,1]	chr11	958666	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	288	2	2.87654	4.08971	5.30288	4.89839e-5	6.66117e-10	0.00111466	7.28393e-8
chr3	98517120	98517189	4318889	0	-	0.434783	(0.42,0.455]	chr3	360208	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000513873.1:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000506927.1:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5:ENST00000507411.5:ENST00000515620.5:ENST00000507944.5:ENST00000508659.5:ENST00000503621.5:ENST00000503799.5:ENST00000508071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.77666	4.08971	4.40276	0.0017618	1.85215e-4	0.0180053	0.00296795
chr10	1007072	1007128	10898764	0	+	0.517857	(0.49,0.53]	chr10	829358	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000491261.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr12	119687498	119687591	13576777	0	-	0.505376	(0.49,0.53]	chr12	1068233	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr12	122094262	122094362	13122645	0	+	0.53	(0.49,0.53]	chr12	1024773	146	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr14	79528954	79529054	14431312	0	+	0.51	(0.49,0.53]	chr14	1127207	612	INTRON	INTRON	NRXN3	ENSG00000021645.20	ENST00000335750.7:ENST00000634499.2:ENST00000554738.5:ENST00000554719.5:ENST00000635466.2:ENST00000557594.5:ENST00000281127.11:ENST00000679122.1:ENST00000428277.6:ENST00000676811.1:ENST00000555387.1:ENST00000555073.5:ENST00000553803.5:ENST00000556003.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr14	81498412	81498494	14732962	0	-	0.52439	(0.49,0.53]	chr14	1154209	1	CDS	CDS:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000554744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr15	40737627	40737726	15231709	0	-	0.50505	(0.49,0.53]	chr15	1198625	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RMDN3	ENSG00000137824.16	ENST00000260385.10:ENST00000560588.5:ENST00000338376.8:ENST00000558777.5:ENST00000557831.1:ENST00000558232.5:ENST00000560779.5:ENST00000558560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr15	90190782	90190882	15098140	0	+	0.5	(0.49,0.53]	chr15	1187725	3	SS5_PROX	SS5_PROX:INTRON	SEMA4B	ENSG00000185033.14	ENST00000559322.5:ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000558895.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr16	74644619	74644693	16032824	0	-	0.527027	(0.49,0.53]	chr16	1287455	1	CDS_START	CDS_START:CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575281.1:ENST00000572610.1:ENST00000572337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr17	39490644	39490733	16219980	0	+	0.505618	(0.49,0.53]	chr17	1311059	2	CDS	CDS:EXON_MRNA:INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr2	111809024	111809102	2846544	0	-	0.512821	(0.49,0.53]	chr2	253819	2	CDS	CDS:EXON_MRNA	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8:ENST00000485325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr20	508551	508605	17871726	0	-	0.518519	(0.49,0.53]	chr20	1512018	1	UTR5	UTR5:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr22	46293258	46293352	18399350	0	+	0.5	(0.49,0.53]	chr22	1567075	5	UTR3	UTR3:EXON_MRNA	TTC38	ENSG00000075234.17	ENST00000381031.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr4	61775689	61775769	5441316	0	-	0.5	(0.49,0.53]	chr4	435486	4	EXON_PSEUDO	EXON_PSEUDO	RP11-621K7.1	ENSG00000226439.3	ENST00000461060.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr4	75787061	75787131	4892867	0	+	0.528571	(0.49,0.53]	chr4	403029	1	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr5	43656732	43656813	5960481	0	+	0.493827	(0.49,0.53]	chr5	467114	2	CDS	CDS:UTR3:EXON_MRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr5	151666360	151666434	6919590	0	-	0.527027	(0.49,0.53]	chr5	530140	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPARC	ENSG00000113140.11	ENST00000231061.9:ENST00000520687.1:ENST00000538026.5:ENST00000537849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr7	76066909	76067008	8342412	0	+	0.50505	(0.49,0.53]	chr7	636262	6	UTR3	UTR3:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr7	100580276	100580376	8951927	0	-	0.5	(0.49,0.53]	chr7	684087	16	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.16	ENST00000310300.11:ENST00000619071.4:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chrX	14020259	14020351	18965038	0	-	0.5	(0.49,0.53]	chrX	1614643	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GEMIN8	ENSG00000046647.14	ENST00000680255.1:ENST00000477386.2:ENST00000380523.8:ENST00000398355.7:ENST00000332885.7:ENST00000460203.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chrX	63428540	63428639	19089375	0	-	0.50505	(0.49,0.53]	chrX	1624082	21	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	LINC01278	ENSG00000235437.8	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000654880.1:ENST00000664356.1:ENST00000666437.1:ENST00000670203.1:ENST00000656953.1:ENST00000669201.1:ENST00000666216.1:ENST00000659222.1:ENST00000662689.1:ENST00000662779.1:ENST00000608788.6:ENST00000669422.1:ENST00000665831.1:ENST00000609401.6:ENST00000609143.6:ENST00000608623.1:ENST00000671033.1:ENST00000656972.1:ENST00000662156.1:ENST00000670242.1:ENST00000665925.1:ENST00000654240.1:ENST00000671338.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	16	2	3.94177	4.0896799999999995	4.23759	0.0104929	0.00436474	0.063428	0.0335517
chr2	54972282	54972379	2666096	0	-	0.257732	[0,0.29]	chr2	238467	2	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5	protein_coding	protein_coding	protein_coding	protein_coding	22	278	2	3.24165	4.08964	4.93763	7.35682e-8	1e-12	4.76183e-6	2.25522e-10
chr19	38305451	38305488	17559371	0	-	0.648649	(0.59,1]	chr19	1474557	1	CDS	CDS:UTR3:EXON_MRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	120	2	3.96462	4.089535	4.21445	4.37862e-5	7.67763e-6	0.00101529	2.20857e-4
chrX	16852557	16852628	18971764	0	-	0.338028	(0.33,0.36]	chrX	1615448	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000481586.1:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.22102	4.089525	5.95803	0.00736622	2.53891e-7	0.0490627	1.24442e-5
chr1	153990796	153990802	479578	0	+	0.5	(0.49,0.53]	chr1	49565	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000392558.4:ENST00000643794.1:ENST00000493224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	176	2	3.76977	4.089105	4.40844	2.11169e-7	1.29127e-10	1.19339e-5	1.69754e-8
chr11	57496097	57496164	12394795	0	-	0.58209	(0.53,0.59]	chr11	958768	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	3.55001	4.088805	4.6276	6.11776e-4	9.26038e-7	0.00818575	3.75136e-5
chr2	20249388	20249488	2540631	0	-	0.43	(0.42,0.455]	chr2	228490	8	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.34191	4.08862	5.83533	0.0159091	1.15767e-6	0.0854674	4.52486e-5
chr6	36916444	36916509	7135671	0	+	0.446154	(0.42,0.455]	chr6	549792	1	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.34191	4.08862	5.83533	0.0159091	1.15767e-6	0.0854674	4.52486e-5
chr6	27824224	27824280	7105155	0	+	0.714286	(0.59,1]	chr6	543466	1	CDS	CDS:EXON_MRNA	H4C11	ENSG00000197238.5	ENST00000355057.3	protein_coding	protein_coding	protein_coding	protein_coding	5	197	2	3.94406	4.088485	4.23291	8.69349e-6	2.43962e-7	2.45289e-4	1.35057e-5
chr3	185418580	185418679	4625655	0	-	0.474747	(0.455,0.49]	chr3	382004	12	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	52	2	3.46389	4.08847	4.71305	9.14164e-4	3.85068e-7	0.0110519	1.76303e-5
chr14	100262384	100262466	14487178	0	+	0.451219	(0.42,0.455]	chr14	1131883	2	CDS	CDS:EXON_MRNA	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000553625.5:ENST00000554804.1:ENST00000651219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.62856	4.08824	4.54792	9.66045e-4	4.02604e-4	0.0115185	0.00549837
chr3	64018963	64019037	4241400	0	-	0.445946	(0.42,0.455]	chr3	356556	3	CDS	CDS:EXON_MRNA	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5:ENST00000497315.5:ENST00000475036.1:ENST00000497323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.62856	4.08824	4.54792	9.66045e-4	4.02604e-4	0.0115185	0.00549837
chr8	108217396	108217460	10002457	0	-	0.359375	(0.33,0.36]	chr8	754170	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	354	2	3.95514	4.0881	4.22106	7.03957e-11	1e-12	1.09078e-8	2.25522e-10
chr1	51787884	51787979	191695	0	+	0.452632	(0.42,0.455]	chr1	24578	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	186	2	3.77911	4.088095	4.39708	1.86147e-7	3.71696e-11	1.07114e-5	5.64228e-9
chr1	54228305	54228356	1028139	0	-	0.470588	(0.455,0.49]	chr1	106766	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6:ENST00000371320.8:ENST00000426150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	3.30384	4.0878499999999995	4.87186	0.00184955	2.33781e-4	0.0178046	0.00385436
chr18	8756255	8756355	16749903	0	+	0.35	(0.33,0.36]	chr18	1381200	354	INTRON	INTRON	MTCL1	ENSG00000168502.17	ENST00000306329.15:ENST00000517570.5:ENST00000359865.7:ENST00000522146.1:ENST00000400050.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.473	4.08763	4.70226	8.77304e-4	4.21411e-7	0.0101202	2.13696e-5
chr1	167772416	167772488	524419	0	+	0.458333	(0.455,0.49]	chr1	56260	3	CDS	CDS:EXON_MRNA:INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	108	2	3.07942	4.08753	5.09564	1.46687e-4	1.20902e-10	0.0026854	1.60565e-8
chr7	16599974	16600072	8702995	0	-	0.377551	(0.36,0.39]	chr7	664638	3	UTR3	UTR3:EXON_MRNA	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.88918	4.087515	5.28585	0.00212816	2.81625e-5	0.0206577	6.42183e-4
chr19	52226275	52226374	17382302	0	+	0.454545	(0.42,0.455]	chr19	1445801	4	UTR3	UTR3:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5:ENST00000391791.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	4.02772	4.087385	4.14705	4.30844e-5	2.1071e-5	0.00100091	5.06044e-4
chr1	1049641	1049718	2376	0	+	0.74026	(0.59,1]	chr1	547	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.97802	4.08725	5.19648	0.00133365	7.35336e-4	0.0139317	0.00921643
chr7	127904746	127904819	8517481	0	+	0.438356	(0.42,0.455]	chr7	649739	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	114	2	3.44537	4.086995	4.72862	8.6897e-5	2.15134e-10	0.00177086	2.68346e-8
chr8	55762651	55762720	9834611	0	-	0.449275	(0.42,0.455]	chr8	744160	1	CDS	CDS:EXON_MRNA:INTRON	TMEM68	ENSG00000167904.15	ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000520061.5:ENST00000522030.1:ENST00000523423.5:ENST00000520414.5:ENST00000521229.5:ENST00000522576.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.37329	4.086964999999999	4.80064	0.00136107	3.0479e-4	0.0141115	0.00472028
chr11	34118395	34118449	11905664	0	+	0.518519	(0.49,0.53]	chr11	909641	1	CDS	CDS:EXON_MRNA	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.42954	4.0869599999999995	4.74438	0.00105489	5.91752e-4	0.0123035	0.00743488
chr12	53665364	53665413	13340965	0	-	0.612245	(0.59,1]	chr12	1049268	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	225	2	3.9624	4.086915	4.21143	1.46712e-6	2.13594e-7	6.07056e-5	1.075e-5
chr9	92047612	92047708	10735793	0	-	0.40625	(0.39,0.42]	chr9	812095	1	CDS	CDS:UTR3:EXON_MRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	4.007	4.086815	4.16663	1.84729e-5	1.77795e-6	5.02409e-4	6.48503e-5
chr7	64337172	64337267	8295686	0	+	0.347368	(0.33,0.36]	chr7	632214	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZNF736	ENSG00000234444.10	ENST00000355095.8:ENST00000423484.3:ENST00000488621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	3.7289	4.086215	4.44353	1.33223e-5	3.20943e-6	3.48915e-4	1.17669e-4
chr20	59025866	59025964	17841490	0	+	0.367347	(0.36,0.39]	chr20	1508910	12	UTR3	UTR3:EXON_MRNA	TUBB1	ENSG00000101162.4	ENST00000217133.2	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.58476	4.0861149999999995	4.58747	6.55819e-4	5.01956e-4	0.00860229	0.00653592
chr12	57233262	57233345	12902140	0	+	0.578313	(0.53,0.59]	chr12	1005207	2	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	3.69065	4.08608	4.48151	3.04331e-4	2.61211e-6	0.00472028	8.99269e-5
chr7	44802917	44803017	8261683	0	+	0.44	(0.42,0.455]	chr7	629477	16	UTR3	UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.31161	4.0859950000000005	4.86038	0.00186138	3.34791e-4	0.018635	0.00472923
chr12	900475	900572	12681583	0	+	0.587629	(0.53,0.59]	chr12	984161	1	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000542424.1:ENST00000537603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.21941	4.08587	4.95233	0.00266171	3.02711e-4	0.0240332	0.00439897
chr4	53452919	53452993	4832384	0	+	0.540541	(0.53,0.59]	chr4	398407	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FIP1L1:RP11-231C18.3	ENSG00000145216.16:ENSG00000282278.1	ENST00000337488.11:ENST00000358575.9:ENST00000306932.10:ENST00000505125.5:ENST00000507166.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1:ENST00000511055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.21941	4.08587	4.95233	0.00266171	3.02711e-4	0.0240332	0.00439897
chr12	110345315	110345382	13085900	0	+	0.477612	(0.455,0.49]	chr12	1020547	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	3.56037	4.08583	4.61129	5.72551e-4	6.5147e-10	0.0078026	7.14063e-8
chr16	29485066	29485160	15909903	0	-	0.531915	(0.53,0.59]	chr16	1274266	5	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RP11-345J4.11:NPIPB12	ENSG00000288632.1:ENSG00000169203.16	ENST00000675579.1:ENST00000458643.3:ENST00000550665.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	18	2	3.61294	4.08577	4.5586	0.0310038	0.00161229	0.130016	0.0169168
chr3	143122110	143122209	3793707	0	+	0.555556	(0.53,0.59]	chr3	323989	13	CDS	CDS:EXON_MRNA	CHST2	ENSG00000175040.6	ENST00000309575.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.61294	4.08577	4.5586	0.0310038	0.00161229	0.130016	0.0169168
chr5	138189077	138189148	6860857	0	-	0.56338	(0.53,0.59]	chr5	524905	1	CDS	CDS:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000464806.1:ENST00000475021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.61294	4.08577	4.5586	0.0310038	0.00161229	0.130016	0.0169168
chr3	33142448	33142546	3397816	0	+	0.5	(0.49,0.53]	chr3	295508	1	UTR3	UTR3:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	3.23548	4.085765	4.93605	2.76544e-4	6.89689e-8	0.00444204	4.06041e-6
chr1	150512498	150512572	468351	0	+	0.540541	(0.53,0.59]	chr1	47406	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr1	183527955	183528027	597750	0	+	0.541667	(0.53,0.59]	chr1	62044	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SMG7	ENSG00000116698.21	ENST00000440812.7:ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6:ENST00000507406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr12	8943800	8943824	13197261	0	-	0.583333	(0.53,0.59]	chr12	1033934	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000536844.5:ENST00000543704.5:ENST00000537621.1:ENST00000543258.1:ENST00000543834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr20	36653519	36653619	17957213	0	-	0.54	(0.53,0.59]	chr20	1521498	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr6	110101676	110101766	7890029	0	-	0.533333	(0.53,0.59]	chr6	604176	2	CDS	CDS:EXON_MRNA	WASF1	ENSG00000112290.13	ENST00000359451.6:ENST00000392588.5:ENST00000392586.5:ENST00000392587.6:ENST00000392589.6	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr8	23022912	23022984	9755811	0	-	0.541667	(0.53,0.59]	chr8	737504	3	CDS	CDS:UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5:ENST00000347739.3:ENST00000523504.5:ENST00000520109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr9	97600974	97601074	10757287	0	-	0.54	(0.53,0.59]	chr9	814474	10	UTR3	UTR3:EXON_MRNA	TSTD2	ENSG00000136925.15	ENST00000341170.5:ENST00000375173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.61856	4.08565	4.55274	0.0303021	0.00167999	0.129773	0.0164993
chr14	31100565	31100656	14568330	0	-	0.351648	(0.33,0.36]	chr14	1141281	6	UTR3	UTR3:EXON_MRNA	HECTD1	ENSG00000092148.13	ENST00000554882.5:ENST00000399332.6:ENST00000553700.5:ENST00000611816.4:ENST00000555843.5:ENST00000556281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	4.04265	4.0855250000000005	4.1284	0.00407303	3.90477e-5	0.0324137	8.43777e-4
chr10	74129107	74129174	11575890	0	-	0.38806	(0.36,0.39]	chr10	881685	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1:ENST00000480373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.18348	4.085455	4.98743	0.00310315	8.82225e-5	0.0263402	0.00178337
chrX	110173297	110173351	18820938	0	+	0.611111	(0.59,1]	chrX	1603937	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.4558	4.08545	4.7151	0.00412279	1.35447e-4	0.0325842	0.00231202
chr16	73478357	73478457	16022406	0	-	0.34	(0.33,0.36]	chr16	1286921	217	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	4.04265	4.08534	4.12803	3.90477e-5	2.90032e-5	8.43777e-4	7.24986e-4
chr20	62388466	62388520	17861425	0	+	0.296296	(0.29,0.33]	chr20	1510061	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.63813	4.085325	5.53252	0.00803229	4.41551e-6	0.0528968	1.39924e-4
chr19	17572482	17572542	17254720	0	+	0.516667	(0.49,0.53]	chr19	1424460	1	CDS	CDS:EXON_MRNA:INTRON	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000597147.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.88731	4.085315	4.28332	0.00338762	4.40111e-6	0.0288632	1.3969e-4
chr11	70760970	70761070	12438963	0	-	0.68	(0.59,1]	chr11	966775	431	INTRON	INTRON	SHANK2	ENSG00000162105.20	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.93526	4.08528	4.2353	0.0165254	1.599e-4	0.0873033	0.00263454
chr16	2519540	2519592	15493408	0	+	0.75	(0.59,1]	chr16	1227535	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	3	118	2	3.6961	4.085195	4.47429	3.68566e-5	1.05499e-5	8.01958e-4	3.15564e-4
chr12	10506283	10506377	12732045	0	+	0.468085	(0.455,0.49]	chr12	989914	4	CDS	CDS:EXON_MRNA	EIF2S3B	ENSG00000180574.3	ENST00000322446.3:ENST00000538173.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.8427	4.085145	5.32759	1.88409e-4	1.92345e-5	0.00301567	5.18397e-4
chr5	10405617	10405677	5875237	0	+	0.366667	(0.36,0.39]	chr5	461989	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.74524	4.085134999999999	4.42503	0.00133228	1.17259e-5	0.0144372	3.12994e-4
chr17	48058677	48058773	16253362	0	+	0.53125	(0.53,0.59]	chr17	1317132	5	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.1234	4.08504	5.04668	0.00390623	3.63266e-8	0.0322851	2.34568e-6
chr11	118522866	118522965	12159161	0	+	0.535354	(0.53,0.59]	chr11	937154	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000648565.1:ENST00000527839.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.89916	4.085015	5.27087	0.00890406	5.9416e-5	0.0565003	0.00130151
chr1	108992373	108992466	396810	0	+	0.44086	(0.42,0.455]	chr1	38396	2	EXON_PSEUDO	EXON_PSEUDO	RP11-20O24.4	ENSG00000244716.3	ENST00000414070.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	151	2	3.89677	4.08498	4.27319	1.36578e-8	5.85595e-9	1.11131e-6	4.90407e-7
chr5	163441315	163441331	6343398	0	+	0.4375	(0.42,0.455]	chr5	493995	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	3.76708	4.08492	4.40276	0.0017618	1.18063e-6	0.0180053	4.59763e-5
chr19	48965407	48965507	17368081	0	+	0.58	(0.53,0.59]	chr19	1442236	2	UTR5	UTR5:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	178	3537	2	3.93732	4.08488	4.23244	1e-12	1e-12	2.46312e-10	2.25522e-10
chr6	139373493	139373581	7995338	0	-	0.556818	(0.53,0.59]	chr6	611350	4	CDS	CDS:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2:ENST00000618718.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	3.34735	4.08481	4.82227	1.46925e-4	2.15841e-7	0.0026854	1.08163e-5
chr15	57231204	57231257	14949565	0	+	0.45283	(0.42,0.455]	chr15	1174868	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000560887.1:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.8096	4.084785	5.35997	0.00253237	2.41298e-5	0.0233955	5.6648e-4
chrX	47586691	47586789	18687926	0	+	0.530612	(0.53,0.59]	chrX	1593573	1	UTR3	UTR3:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000218388.9:ENST00000377017.5:ENST00000445623.1	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	3.43029	4.084655	4.73902	1.20772e-6	3.99607e-7	4.6869e-5	2.04183e-5
chr17	19508108	19508208	16156756	0	+	0.56	(0.53,0.59]	chr17	1303124	107	INTRON	INTRON	SLC47A1	ENSG00000142494.13	ENST00000584348.5	protein_coding	processed_transcript	protein_coding	processed_transcript	5	65	2	1.78129	4.084565	6.38784	0.0173127	3.69844e-8	0.0914071	2.62043e-6
chr3	113809427	113809524	3676118	0	+	0.360825	(0.36,0.39]	chr3	314510	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5:ENST00000461496.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	3.89918	4.08417	4.26916	1.0624e-4	9.09682e-6	0.00205241	2.53877e-4
chr16	20769983	20770034	15582725	0	+	0.45098	(0.42,0.455]	chr16	1234736	1	UTR5	UTR5:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000561584.5:ENST00000564701.1:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.33282	4.084075	5.83533	0.00677333	1.15767e-6	0.0462932	4.52486e-5
chr8	47788905	47788977	9815629	0	-	0.513889	(0.49,0.53]	chr8	742507	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.75215	4.083875	5.4156	8.79689e-4	1.84143e-5	0.0107294	4.53637e-4
chr10	69401228	69401322	11096852	0	+	0.5	(0.49,0.53]	chr10	843823	2	UTR3	UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.68653	4.083855	5.48118	0.00122977	1.24248e-5	0.013593	3.28918e-4
chr10	84150708	84150794	11164605	0	+	0.476744	(0.455,0.49]	chr10	848155	1	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	3.76882	4.08359	4.39836	1.00626e-5	7.82907e-8	3.03291e-4	4.52822e-6
chr17	41524142	41524205	16542254	0	-	0.571429	(0.53,0.59]	chr17	1355971	1	CDS	CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000468880.1:ENST00000593096.1:ENST00000471565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.20874	4.083495	4.95825	0.00278422	2.87508e-4	0.0241009	0.00457439
chr2	43888005	43888104	2622910	0	-	0.545455	(0.53,0.59]	chr2	236084	19	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.29875	4.083489999999999	4.86823	0.00191422	4.35895e-4	0.018324	0.00623608
chr21	9836067	9836166	18158790	0	-	0.555556	(0.53,0.59]	chr21	1541889	194	INTRON	INTRON	LINC01667	ENSG00000280081.4	ENST00000651050.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	31	2	3.29875	4.083489999999999	4.86823	0.00191422	4.35895e-4	0.018324	0.00623608
chr8	22408309	22408402	9224894	0	+	0.569892	(0.53,0.59]	chr8	705666	1	CDS	CDS:EXON_MRNA	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000240095.10:ENST00000289952.9:ENST00000519960.5:ENST00000522881.2:ENST00000517552.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.29875	4.083489999999999	4.86823	0.00191422	4.35895e-4	0.018324	0.00623608
chr1	205620382	205620473	1461628	0	-	0.461538	(0.455,0.49]	chr1	147411	6	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.8036	4.083335	4.36307	0.00218641	1.59194e-4	0.0208941	0.00263091
chr11	111882367	111882460	12134535	0	+	0.483871	(0.455,0.49]	chr11	934571	1	CDS	CDS:UTR5:EXON_MRNA	C11orf1	ENSG00000137720.8	ENST00000528125.5:ENST00000260276.8:ENST00000530214.5:ENST00000530799.5:ENST00000529270.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.8036	4.083335	4.36307	0.00218641	1.59194e-4	0.0208941	0.00263091
chr14	94060441	94060527	14775238	0	-	0.488372	(0.455,0.49]	chr14	1157290	5	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.8036	4.083335	4.36307	0.00218641	1.59194e-4	0.0208941	0.00263091
chr18	57601651	57601751	17137464	0	-	0.48	(0.455,0.49]	chr18	1407138	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.8036	4.083335	4.36307	0.00218641	1.59194e-4	0.0208941	0.00263091
chr19	52225981	52226079	17382299	0	+	0.612245	(0.59,1]	chr19	1445801	1	UTR3	UTR3:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5:ENST00000391791.4	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.77418	4.08265	5.39112	0.0160729	2.53595e-4	0.0860154	0.00381472
chr5	69228288	69228387	6019710	0	+	0.353535	(0.33,0.36]	chr5	471328	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MRPS36	ENSG00000134056.12	ENST00000256441.5:ENST00000507022.1:ENST00000512880.5:ENST00000602380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	3.52547	4.0825949999999995	4.63972	7.60232e-5	6.04873e-7	0.00159574	2.60562e-5
chr16	89563142	89563242	15810108	0	+	0.47	(0.455,0.49]	chr16	1258685	2	UTR3	UTR3:EXON_MRNA	RPL13	ENSG00000167526.14	ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.65545	4.0817499999999995	4.50805	0.00122223	3.50134e-4	0.0135383	0.0049086
chr12	22065583	22065674	12783527	0	+	0.32967	(0.29,0.33]	chr12	992950	4	UTR3	UTR3:EXON_MRNA	CMAS	ENSG00000111726.13	ENST00000229329.7:ENST00000534981.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.13212	4.08168	5.03124	0.00551048	9.06368e-5	0.0414592	0.00167558
chrX	16761255	16761355	18593538	0	+	0.3	(0.29,0.33]	chrX	1588375	10	UTR3	UTR3:EXON_MRNA	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.13212	4.08168	5.03124	0.00551048	9.06368e-5	0.0414592	0.00167558
chr11	57737933	57738026	11952406	0	+	0.408602	(0.39,0.42]	chr11	914724	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	95	2	3.5819	4.08151	4.58112	1.00889e-6	1.32807e-8	4.0236e-5	1.08317e-6
chr12	57489018	57489109	12902733	0	+	0.571429	(0.53,0.59]	chr12	1005342	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000550449.5:ENST00000546481.1:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551431.5:ENST00000547501.5:ENST00000553162.5:ENST00000551842.5:ENST00000548714.5:ENST00000547062.5:ENST00000551892.1:ENST00000552007.5:ENST00000630803.1:ENST00000630571.2:ENST00000548146.1:ENST00000553123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	3.11992	4.08145	5.04298	1.91383e-4	1.09102e-4	0.0032874	0.00194222
chr14	105145811	105145892	14800011	0	-	0.703704	(0.59,1]	chr14	1160116	2	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.71566	4.0811850000000005	4.44671	0.0487443	0.00931497	0.175495	0.0586162
chr19	50382798	50382896	17375796	0	+	0.653061	(0.59,1]	chr19	1444407	3	UTR3	UTR3:EXON_MRNA	NR1H2	ENSG00000131408.15	ENST00000593532.5:ENST00000652203.1:ENST00000253727.10:ENST00000598168.5:ENST00000599105.5:ENST00000593926.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	22	2	3.71566	4.0811850000000005	4.44671	0.0487443	0.00931497	0.175495	0.0586162
chr3	49123913	49124006	4172744	0	-	0.591398	(0.59,1]	chr3	350544	3	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000477225.1:ENST00000480640.1:ENST00000538659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	22	2	3.71566	4.0811850000000005	4.44671	0.0487443	0.00931497	0.175495	0.0586162
chr7	128837636	128837695	8522311	0	+	0.661017	(0.59,1]	chr7	650320	1	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.71566	4.0811850000000005	4.44671	0.0487443	0.00931497	0.175495	0.0586162
chr8	123042022	123042122	10056189	0	-	0.64	(0.59,1]	chr8	756484	1	CDS_START	CDS_START:CDS:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000419562.6	protein_coding	protein_coding	protein_coding	protein_coding	0	22	2	3.71566	4.0811850000000005	4.44671	0.0487443	0.00931497	0.175495	0.0586162
chr15	65119375	65119463	15343454	0	-	0.545455	(0.53,0.59]	chr15	1211439	1	CDS	CDS:EXON_MRNA	PDCD7	ENSG00000090470.15	ENST00000204549.9:ENST00000560313.2:ENST00000559051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr16	1692275	1692372	15488598	0	+	0.57732000000000006	(0.53,0.59]	chr16	1226174	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5:ENST00000382710.8:ENST00000566691.5:ENST00000565851.5:ENST00000568376.1:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr17	43016270	43016370	16550655	0	-	0.57	(0.53,0.59]	chr17	1357995	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1:ENST00000587173.5:ENST00000420567.7:ENST00000587147.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr19	309712	309808	17414798	0	-	0.572917	(0.53,0.59]	chr19	1451466	4	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr19	14765657	14765730	17482524	0	-	0.589041	(0.53,0.59]	chr19	1464822	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr2	219252088	219252188	3191537	0	-	0.56	(0.53,0.59]	chr2	280995	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2:ENST00000427737.6:ENST00000456818.5:ENST00000462806.5:ENST00000447205.1:ENST00000475683.1:ENST00000425551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr22	36261646	36261722	18360585	0	+	0.552632	(0.53,0.59]	chr22	1561186	1	CDS	CDS:UTR3:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000422471.5:ENST00000397278.8:ENST00000427990.5:ENST00000439680.5:ENST00000438034.5:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr22	39960054	39960114	18372662	0	+	0.533333	(0.53,0.59]	chr22	1563496	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr3	32191235	32191333	3393477	0	+	0.581633	(0.53,0.59]	chr3	295224	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP11	ENSG00000237433.1	ENST00000443010.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chrX	53544694	53544762	19077283	0	-	0.544118	(0.53,0.59]	chrX	1622686	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chrX	154487890	154487985	19278512	0	-	0.589474	(0.53,0.59]	chrX	1638472	4	CDS	CDS:EXON_MRNA	SLC10A3	ENSG00000126903.16	ENST00000263512.5:ENST00000369649.8:ENST00000651600.1:ENST00000393586.1:ENST00000393587.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.99819	4.08101	4.16383	0.0111308	0.00659193	0.0665375	0.0454205
chr1	11212392	11212474	860611	0	-	0.560976	(0.53,0.59]	chr1	87107	2	CDS	CDS:EXON_MRNA	MTOR	ENSG00000198793.13	ENST00000361445.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr1	30878622	30878681	915958	0	-	0.576271	(0.53,0.59]	chr1	95931	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11:ENST00000471567.1:ENST00000487984.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr1	183552121	183552216	598017	0	+	0.589474	(0.53,0.59]	chr1	62138	3	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr12	51059360	51059435	12876164	0	+	0.546667	(0.53,0.59]	chr12	1000593	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000550929.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr15	34489982	34490080	15205574	0	-	0.530612	(0.53,0.59]	chr15	1197044	11	EXON_PSEUDO	EXON_PSEUDO	HNRNPLP2	ENSG00000259917.1	ENST00000568980.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr17	1858282	1858364	16402472	0	-	0.560976	(0.53,0.59]	chr17	1335108	4	EXON_PSEUDO	EXON_PSEUDO	AC016292.3	ENSG00000108958.4	ENST00000451056.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr17	41904728	41904790	16544138	0	-	0.532258	(0.53,0.59]	chr17	1356552	1	CDS	CDS:EXON_MRNA:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000590770.5:ENST00000588547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr17	49409099	49409158	16581191	0	-	0.559322	(0.53,0.59]	chr17	1362368	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr19	4028509	4028600	17204409	0	+	0.582418	(0.53,0.59]	chr19	1414291	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000596144.1:ENST00000601439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr19	46694046	46694133	17594904	0	-	0.586207	(0.53,0.59]	chr19	1481222	3	CDS	CDS:EXON_MRNA	PRKD2	ENSG00000105287.13	ENST00000601806.5:ENST00000291281.9:ENST00000433867.5:ENST00000600194.5:ENST00000599019.5:ENST00000597589.5:ENST00000595515.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr2	37100204	37100303	2597015	0	-	0.545455	(0.53,0.59]	chr2	233829	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr2	157286074	157286134	2152386	0	+	0.533333	(0.53,0.59]	chr2	198585	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr3	195781966	195782065	4661086	0	-	0.575758	(0.53,0.59]	chr3	385270	33	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr6	31507021	31507114	7115391	0	+	0.569892	(0.53,0.59]	chr6	545671	1	CDS	CDS:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7:ENST00000494577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr6	79953278	79953370	7808124	0	-	0.586957	(0.53,0.59]	chr6	598268	4	EXON_PSEUDO	EXON_PSEUDO	GAPDHP63	ENSG00000218582.2	ENST00000405405.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr8	33969722	33969800	9785944	0	-	0.538462	(0.53,0.59]	chr8	740127	3	EXON_PSEUDO	EXON_PSEUDO	RP1-273G13.2	ENSG00000188512.6	ENST00000523393.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr9	33441712	33441804	10632544	0	-	0.532609	(0.53,0.59]	chr9	803588	7	UTR3	UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chrX	53431403	53431503	19077089	0	-	0.56	(0.53,0.59]	chrX	1622604	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSD17B10	ENSG00000072506.14	ENST00000375304.9:ENST00000684251.1:ENST00000477706.1:ENST00000168216.11:ENST00000684692.1:ENST00000375298.4:ENST00000682365.1:ENST00000495986.2:ENST00000684503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chrX	71252777	71252871	19107095	0	-	0.531915	(0.53,0.59]	chrX	1625480	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1:ENST00000373982.5:ENST00000373981.5:ENST00000373978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	4.00393	4.08099	4.15805	0.0108084	0.00680952	0.064368	0.0468196
chr4	62105659	62105756	5441661	0	-	0.443299	(0.42,0.455]	chr4	435503	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRL3-AS1:RPS15AP17	ENSG00000248692.5:ENSG00000225405.3	ENST00000504135.5:ENST00000506704.5:ENST00000509461.5:ENST00000470598.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	6	104	2	3.87621	4.080855	4.2855	8.02587e-6	2.2108e-8	2.50919e-4	1.53616e-6
chr11	64197913	64197974	11979253	0	+	0.491803	(0.49,0.53]	chr11	918715	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000544739.5:ENST00000537479.5:ENST00000538497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.61777	4.080835	5.5439	0.00172617	8.44877e-6	0.0178146	2.39255e-4
chr18	659640	659714	16716908	0	+	0.459459	(0.455,0.49]	chr18	1379275	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9:ENST00000584122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	3.08961	4.080665	5.07172	0.00445157	8.3067e-5	0.0340751	0.00171126
chr11	123059706	123059784	12636986	0	-	0.474359	(0.455,0.49]	chr11	980716	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	318	2	3.79858	4.08066	4.36274	1.73736e-10	6.69453e-12	2.45858e-8	1.21836e-9
chr1	109421859	109421926	1220582	0	-	0.41791	(0.39,0.42]	chr1	119108	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.82973	4.080515	4.3313	0.00209984	1.3728e-4	0.0204266	0.00232973
chr13	95177706	95177793	14110962	0	-	0.471264	(0.455,0.49]	chr13	1104420	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.40009	4.080285	4.76048	0.00120619	3.99985e-4	0.0129255	0.00588767
chr17	50134234	50134333	16584275	0	-	0.484848	(0.455,0.49]	chr17	1362799	6	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.40009	4.080285	4.76048	0.00120619	3.99985e-4	0.0129255	0.00588767
chr19	48922803	48922898	17367854	0	+	0.589474	(0.53,0.59]	chr19	1442160	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	3.1234	4.080225	5.03705	0.00390623	0.00020199200000000001	0.0322851	0.00317801
chr19	49869424	49869523	17607880	0	-	0.585859	(0.53,0.59]	chr19	1484407	5	UTR3	UTR3:EXON_MRNA:INTRON	PNKP:AKT1S1	ENSG00000039650.12:ENSG00000204673.11	ENST00000629179.1:ENST00000391834.6:ENST00000391833.5:ENST00000344175.10:ENST00000391832.7:ENST00000391835.1:ENST00000391831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.1234	4.080225	5.03705	0.00390623	0.00020199200000000001	0.0322851	0.00317801
chr22	21621669	21621767	18303178	0	+	0.55102	(0.53,0.59]	chr22	1554195	1	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.1234	4.080225	5.03705	0.00390623	0.00020199200000000001	0.0322851	0.00317801
chr4	2514886	2514983	4683882	0	+	0.56701	(0.53,0.59]	chr4	388476	12	UTR3	UTR3:EXON_MRNA:INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000314289.13:ENST00000511600.5:ENST00000508235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.1234	4.080225	5.03705	0.00390623	0.00020199200000000001	0.0322851	0.00317801
chr1	40069689	40069781	151952	0	+	0.521739	(0.49,0.53]	chr1	19028	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.49797	4.079845	5.66172	0.00843736	3.99372e-6	0.0546021	1.28691e-4
chrX	77968595	77968688	19129665	0	-	0.419355	(0.39,0.42]	chrX	1626916	8	UTR3	UTR3:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.34349	4.0797	5.81591	0.0169272	1.11558e-6	0.0890655	4.4003e-5
chr10	59794472	59794534	11517244	0	-	0.483871	(0.455,0.49]	chr10	877726	1	CDS	CDS:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.73589	4.07969	4.42349	2.30579e-4	3.27827e-6	0.00382267	1.08637e-4
chr1	160311867	160311942	1328917	0	-	0.48	(0.455,0.49]	chr1	136069	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.99697	4.07956	5.16215	9.57891e-4	5.04348e-5	0.0107247	0.00113788
chr16	260064	260160	15481037	0	+	0.5625	(0.53,0.59]	chr16	1224268	2	CDS	CDS:EXON_MRNA	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000600536.1:ENST00000421000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	3.75615	4.079330000000001	4.40251	2.16536e-4	4.48447e-6	0.00361336	1.41623e-4
chr22	38741493	38741571	18511623	0	-	0.551282	(0.53,0.59]	chr22	1580331	1	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000477262.5:ENST00000469086.5:ENST00000464202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	3.75615	4.079330000000001	4.40251	2.16536e-4	4.48447e-6	0.00361336	1.41623e-4
chr6	32171296	32171396	7664680	0	-	0.55	(0.53,0.59]	chr6	586117	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000476663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.47	4.079055	5.68811	0.0089333	5.40688e-6	0.0567495	1.64762e-4
chr2	174719907	174719989	2221017	0	+	0.560976	(0.53,0.59]	chr2	203051	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC018890.6:H3P6	ENSG00000236449.2:ENSG00000235655.3	ENST00000442996.1:ENST00000369387.4	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	48	2	2.57867	4.07899	5.57931	0.00198261	1.05602e-5	0.0195088	2.89015e-4
chr3	51969241	51969333	4181187	0	-	0.423913	(0.42,0.455]	chr3	352425	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PCBP4:RP11-155D18.12:ABHD14B	ENSG00000090097.22:ENSG00000272762.5:ENSG00000114779.20	ENST00000489595.6:ENST00000488257.2:ENST00000483233.5:ENST00000315877.14:ENST00000361143.10:ENST00000487005.1:ENST00000395008.6:ENST00000461108.5:ENST00000525795.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	85	2	3.7051	4.0787949999999995	4.45249	2.45559e-6	3.77638e-7	9.39733e-5	1.73699e-5
chr14	50572066	50572140	14621824	0	-	0.337838	(0.33,0.36]	chr14	1145159	3	EXON_PSEUDO	EXON_PSEUDO	SNRPGP1	ENSG00000258577.1	ENST00000553864.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.81832	4.07864	4.33896	0.0135793	0.00182033	0.0745701	0.0183913
chr22	36487577	36487674	18499383	0	-	0.340206	(0.33,0.36]	chr22	1578355	5	UTR3	UTR3:EXON_MRNA	FOXRED2	ENSG00000100350.15	ENST00000397224.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81832	4.07864	4.33896	0.0135793	0.00182033	0.0745701	0.0183913
chr7	157267945	157268040	8636754	0	+	0.347368	(0.33,0.36]	chr7	659767	3	UTR3	UTR3:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.81832	4.07864	4.33896	0.0135793	0.00182033	0.0745701	0.0183913
chr11	65352336	65352432	11984145	0	+	0.572917	(0.53,0.59]	chr11	920300	7	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	3.03385	4.07843	5.12301	1.81515e-4	1.2852e-4	0.00293332	0.00241206
chr2	96278546	96278628	2790295	0	-	0.536585	(0.53,0.59]	chr2	248711	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	3.03385	4.07843	5.12301	1.81515e-4	1.2852e-4	0.00293332	0.00241206
chr11	5269978	5270067	12240782	0	-	0.550562	(0.53,0.59]	chr11	946121	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	90	2	2.72478	4.078374999999999	5.43197	0.00324675	1.3341e-9	0.0282494	1.35579e-7
chr1	40071533	40071626	151975	0	+	0.462366	(0.455,0.49]	chr1	19043	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1:ENST00000494114.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	3.8203	4.077975	4.33565	6.9787e-6	5.69287e-6	2.0562e-4	1.88744e-4
chr3	196055079	196055153	4663194	0	-	0.432432	(0.42,0.455]	chr3	385564	1	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5:ENST00000483983.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	293	2	3.5839	4.07794	4.57198	8.32297e-9	1e-12	7.24955e-7	2.25522e-10
chr19	17559329	17559421	17254580	0	+	0.597826	(0.59,1]	chr19	1424428	1	CDS_START	CDS_START:CDS:EXON_MRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000600474.1	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.28861	4.077865	4.86712	0.0028753	7.89754e-7	0.0256141	3.26923e-5
chr12	7135326	7135395	12717216	0	+	0.565217	(0.53,0.59]	chr12	987661	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000541953.5:ENST00000266546.11:ENST00000541667.5:ENST00000545663.5:ENST00000535452.5:ENST00000534830.5:ENST00000539982.5:ENST00000537408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	3.38347	4.077845	4.77222	0.00132446	6.67251e-4	0.0138834	0.00867533
chr12	67305700	67305800	12934063	0	+	0.4	(0.39,0.42]	chr12	1008094	7	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.51636	4.077595	4.63883	6.99837e-4	5.68159e-4	0.00846751	0.0077844
chr11	5664717	5664808	12244784	0	-	0.450549	(0.42,0.455]	chr11	946297	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2643I7.5:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000642298.1:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	3.71365	4.0775749999999995	4.4415	2.63375e-4	2.94164e-6	0.00427022	9.91141e-5
chr1	119184532	119184631	429717	0	+	0.343434	(0.33,0.36]	chr1	42478	7	INTRON	INTRON	WARS2-AS1	ENSG00000231365.6	ENST00000667138.1:ENST00000418015.1:ENST00000413531.5	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	4.02603	4.077215000000001	4.1284	0.0071776	0.00407303	0.048188	0.0324137
chr3	125339808	125339908	4426447	0	-	0.35	(0.33,0.36]	chr3	367545	5	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000495019.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	4.02603	4.077215000000001	4.1284	0.0071776	0.00407303	0.048188	0.0324137
chr4	123007498	123007598	5089079	0	+	0.36	(0.33,0.36]	chr4	413142	165	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	4.02603	4.077030000000001	4.12803	0.0071776	2.90032e-5	0.048188	7.24986e-4
chr8	99292946	99293046	9512845	0	+	0.32	(0.29,0.33]	chr8	723224	173	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	200	2	3.94657	4.077	4.20743	5.37692e-11	4.78669e-11	7.83261e-9	7.75649e-9
chr5	150710664	150710761	6914732	0	-	0.391753	(0.39,0.42]	chr5	529276	24	UTR3	UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	4.02687	4.0768249999999995	4.12678	4.35816e-5	7.24702e-7	0.00091744700000000005	3.39777e-5
chr5	69228199	69228288	6019709	0	+	0.393258	(0.39,0.42]	chr5	471327	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MRPS36	ENSG00000134056.12	ENST00000256441.5:ENST00000507022.1:ENST00000512880.5:ENST00000602380.1:ENST00000503793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	3.67083	4.076735	4.48264	1.93844e-5	1.99404e-6	4.72961e-4	7.88826e-5
chr5	109716191	109716264	6142374	0	+	0.452055	(0.42,0.455]	chr5	479919	2	CDS	CDS:EXON_MRNA	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.8515	4.0766350000000005	4.30177	0.0119089	7.69083e-6	0.0686664	2.20857e-4
chr1	161214193	161214272	499204	0	+	0.56962	(0.53,0.59]	chr1	54050	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	128	2	3.43955	4.07635	4.71315	3.45609e-6	6.76884e-9	1.13431e-4	6.05494e-7
chr1	32226225	32226320	127511	0	+	0.526316	(0.49,0.53]	chr1	15794	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	117	2	3.86065	4.07598	4.29131	5.46336e-7	1.4456e-8	2.66561e-5	1.06672e-6
chr9	76398895	76398994	10312897	0	+	0.515152	(0.49,0.53]	chr9	776488	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP9	ENSG00000234618.1	ENST00000418207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	52	2	3.60476	4.0757200000000005	4.54668	4.52633e-4	1.40979e-6	0.00642319	5.33111e-5
chr15	72583978	72584076	15018738	0	+	0.336735	(0.33,0.36]	chr15	1180122	8	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.47163	4.07545	5.67927	0.0129725	1.93383e-6	0.0724783	6.97773e-5
chr15	64366004	64366075	15341394	0	-	0.323944	(0.29,0.33]	chr15	1211045	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	4.05177	4.075315	4.09886	4.1989e-5	3.72769e-5	9.84661e-4	8.08834e-4
chr20	34540580	34540624	17765579	0	+	0.318182	(0.29,0.33]	chr20	1500416	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ITCH:DYNLRB1	ENSG00000078747.16:ENSG00000125971.17	ENST00000664852.1:ENST00000480759.1:ENST00000357156.7:ENST00000374846.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	4.05177	4.075315	4.09886	4.1989e-5	3.72769e-5	9.84661e-4	8.08834e-4
chr1	11087799	11087854	859370	0	-	0.436364	(0.42,0.455]	chr1	86870	1	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr1	37537647	37537747	947051	0	-	0.45	(0.42,0.455]	chr1	99480	33	UTR3	UTR3:EXON_MRNA	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000638725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr11	28035440	28035494	12317592	0	-	0.425926	(0.42,0.455]	chr11	952811	2	CDS	CDS:EXON_MRNA	KIF18A	ENSG00000121621.7	ENST00000263181.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr17	42131506	42131606	16546008	0	-	0.44	(0.42,0.455]	chr17	1356981	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000552162.5:ENST00000546881.1:ENST00000550504.5:ENST00000550406.1:ENST00000550013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr2	190976931	190977024	3087853	0	-	0.451613	(0.42,0.455]	chr2	272842	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2:ENST00000361099.8:ENST00000673762.1:ENST00000540176.6:ENST00000674081.1:ENST00000674028.1:ENST00000673858.1:ENST00000423282.2:ENST00000673863.1:ENST00000673832.1:ENST00000673942.1:ENST00000673777.1:ENST00000673734.1:ENST00000409465.5:ENST00000674080.1:ENST00000673952.1:ENST00000674153.1:ENST00000673841.1:ENST00000392322.7:ENST00000452281.6:ENST00000673885.1:ENST00000392323.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr5	856276	856376	6421534	0	-	0.44	(0.42,0.455]	chr5	500257	53	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr9	35756024	35756123	10246757	0	+	0.454545	(0.42,0.455]	chr9	770910	33	UTR3	UTR3:EXON_MRNA	RGP1	ENSG00000107185.10	ENST00000378078.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chrX	41232820	41232919	18669261	0	+	0.444444	(0.42,0.455]	chrX	1592155	4	UTR3	UTR3:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.90921	4.07527	4.24133	0.0121657	0.00326918	0.0701019	0.0282494
chr6	16295276	16295367	7067850	0	+	0.648352	(0.59,1]	chr6	540929	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5:ENST00000544145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.61074	4.075215	5.53969	0.025486	1.29608e-4	0.117089	0.00223885
chr14	103912665	103912694	14797142	0	-	0.551724	(0.53,0.59]	chr14	1159807	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000554287.1:ENST00000553449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	2.515	4.07487	5.63474	0.0292633	7.53339e-6	0.129773	2.17987e-4
chr12	132006788	132006877	13160182	0	+	0.449438	(0.42,0.455]	chr12	1028657	2	CDS	CDS:EXON_MRNA	EP400	ENSG00000183495.14	ENST00000389561.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.05954	4.07467	4.0898	0.00698074	0.00617886	0.0473262	0.0439741
chr16	14644346	14644446	15559952	0	+	0.43	(0.42,0.455]	chr16	1231740	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000566520.5:ENST00000562442.5:ENST00000562121.1:ENST00000261658.7:ENST00000563313.5:ENST00000570219.1:ENST00000566710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.05954	4.07467	4.0898	0.00698074	0.00617886	0.0473262	0.0439741
chr2	135755610	135755691	2083111	0	+	0.432099	(0.42,0.455]	chr2	195428	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000426921.5:ENST00000272638.14:ENST00000416538.5:ENST00000470687.1:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.05954	4.07467	4.0898	0.00698074	0.00617886	0.0473262	0.0439741
chr5	31553684	31553781	5919696	0	+	0.453608	(0.42,0.455]	chr5	463928	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.05954	4.07467	4.0898	0.00698074	0.00617886	0.0473262	0.0439741
chr7	16689837	16689906	8149024	0	+	0.434783	(0.42,0.455]	chr7	622148	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000407633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.05954	4.07467	4.0898	0.00698074	0.00617886	0.0473262	0.0439741
chr7	86887806	86887905	8908522	0	-	0.444444	(0.42,0.455]	chr7	679763	69	INTRON	INTRON	ELAPOR2	ENSG00000164659.15	ENST00000450689.7:ENST00000444627.5:ENST00000394714.6:ENST00000416314.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.05954	4.07467	4.0898	0.00698074	0.00617886	0.0473262	0.0439741
chr15	74411884	74411948	15374446	0	-	0.671875	(0.59,1]	chr15	1215159	1	CDS	CDS:EXON_MRNA:PRIMIRNA	SEMA7A:MIR6881	ENSG00000138623.10:ENSG00000277391.1	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6:ENST00000616450.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	2	58	2	2.89474	4.07427	5.2538	0.00190546	5.85045e-4	0.018313	0.00793559
chr12	120200718	120200783	13579778	0	-	0.523077	(0.49,0.53]	chr12	1068822	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	233	2	4.06195	4.074005	4.08606	3.5239e-9	1.52398e-10	3.41712e-7	1.96777e-8
chr7	97856689	97856752	8940658	0	-	0.380952	(0.36,0.39]	chr7	682253	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	92	2	3.46497	4.073945	4.68292	0.00105709	2.69523e-10	0.0123035	3.27636e-8
chr3	41238015	41238076	3432609	0	+	0.52459	(0.49,0.53]	chr3	298569	1	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	3.02891	4.0737950000000005	5.11868	8.23332e-4	9.66505e-5	0.0102121	0.00175267
chr15	29701206	29701303	15183784	0	-	0.42268	(0.42,0.455]	chr15	1195074	20	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	3.74859	4.073765	4.39894	1.15347e-5	3.61951e-6	3.09736e-4	1.29307e-4
chr8	30785615	30785707	9782382	0	-	0.304348	(0.29,0.33]	chr8	739783	1	UTR3	UTR3:EXON_MRNA:INTRON	PPP2CB	ENSG00000104695.13	ENST00000523023.1:ENST00000221138.9:ENST00000518564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.90323	4.07355	4.24387	0.00263476	9.15815e-5	0.0239118	0.00168607
chr19	6534599	6534690	17213522	0	+	0.637363	(0.59,1]	chr19	1415922	1	CDS	CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	4	162	2	3.6961	4.07346	4.45082	3.68566e-5	4.37454e-7	8.01958e-4	2.2018e-5
chr12	56588569	56588621	12899894	0	+	0.423077	(0.42,0.455]	chr12	1004638	2	EXON_SMALL	EXON_SMALL:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBMS2:RNU6-343P	ENSG00000076067.13:ENSG00000201579.1	ENST00000262031.10:ENST00000552247.6:ENST00000552916.5:ENST00000542360.1:ENST00000550726.5:ENST00000364709.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:nonsense_mediated_decay	1	33	2	2.36247	4.073135000000001	5.7838	0.0462889	1.6512e-6	0.176878	6.0825e-5
chr20	38952520	38952617	17787115	0	+	0.43299	(0.42,0.455]	chr20	1503191	1	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.36247	4.073135000000001	5.7838	0.0462889	1.6512e-6	0.176878	6.0825e-5
chr4	120061974	120062034	5621486	0	-	0.433333	(0.42,0.455]	chr4	448093	1	CDS	CDS:EXON_MRNA:INTRON	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.36247	4.073135000000001	5.7838	0.0462889	1.6512e-6	0.176878	6.0825e-5
chr1	116941806	116941898	424734	0	+	0.543478	(0.53,0.59]	chr1	41925	2	CDS	CDS:EXON_MRNA	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.3733	4.07276	4.77222	0.0529193	6.67251e-4	0.18423900000000001	0.00867533
chr19	14755727	14755802	17482418	0	-	0.586667	(0.53,0.59]	chr19	1464800	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.3733	4.07276	4.77222	0.0529193	6.67251e-4	0.18423900000000001	0.00867533
chr2	43223647	43223742	2618840	0	-	0.378947	(0.36,0.39]	chr2	235738	14	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.75447	4.07276	5.39105	3.28568e-4	7.73826e-6	0.00467693	2.43421e-4
chr18	59333090	59333167	17142366	0	-	0.415584	(0.39,0.42]	chr18	1407613	1	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	107	2	3.93679	4.0725999999999996	4.20841	3.23284e-6	3.93008e-9	1.18341e-4	3.45635e-7
chr1	154963237	154963331	1306099	0	-	0.531915	(0.53,0.59]	chr1	131616	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PYGO2:SHC1	ENSG00000163348.4:ENSG00000160691.19	ENST00000483463.1:ENST00000368453.8:ENST00000368450.5:ENST00000448116.7:ENST00000368449.8:ENST00000368445.9:ENST00000490667.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.98115	4.07249	4.16383	0.00659193	6.28226e-5	0.0454205	0.00124286
chrX	119236363	119236463	18840399	0	+	0.65	(0.59,1]	chrX	1605464	1	CDS_START	CDS_START:CDS:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.99997	4.0724	4.14483	0.0183207	1.30803e-4	0.0945306	0.00243846
chrX	119243154	119243254	18840470	0	+	0.49	(0.455,0.49]	chrX	1605478	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	3.74769	4.072345	4.397	1.33345e-6	6.48592e-10	5.61083e-5	7.11131e-8
chr11	494511	494600	12226366	0	-	0.382022	(0.36,0.39]	chr11	943334	1	UTR3	UTR3:EXON_MRNA	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.02397	4.072255	5.12054	0.00674398	7.15553e-5	0.0461258	0.00137393
chr7	75533495	75533595	8859853	0	-	0.35	(0.33,0.36]	chr7	677095	3	UTR3	UTR3:EXON_MRNA	HIP1	ENSG00000127946.17	ENST00000336926.11	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.97606	4.07202	5.16798	0.00871774	4.80331e-5	0.0558165	9.91058e-4
chr1	91387228	91387328	1163772	0	-	0.48	(0.455,0.49]	chr1	114858	10	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	326	5131	2	3.62419	4.07187	4.51955	1e-12	1e-12	2.46312e-10	2.25522e-10
chr19	8379919	8380019	17449987	0	-	0.53	(0.49,0.53]	chr19	1458696	22	INTRON	INTRON	RAB11B-AS1	ENSG00000269386.5	ENST00000597785.1:ENST00000593581.5	lncRNA	lncRNA	lncRNA	lncRNA	10	188	2	2.87828	4.0716850000000004	5.26509	1.55123e-5	1e-12	4.35031e-4	2.25522e-10
chr1	87072983	87073083	341090	0	+	0.44	(0.42,0.455]	chr1	33599	1	CDS_START	CDS_START:CDS:EXON_MRNA	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370551.8:ENST00000591456.1:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.46349	4.07165	4.67981	9.0025e-4	5.38444e-4	0.0102618	0.00744072
chr11	65716666	65716736	11986014	0	+	0.428571	(0.42,0.455]	chr11	920878	1	CDS	CDS:EXON_MRNA	KAT5	ENSG00000172977.13	ENST00000377046.7:ENST00000352980.8:ENST00000530446.5:ENST00000341318.9:ENST00000534650.5:ENST00000533441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.46349	4.07165	4.67981	9.0025e-4	5.38444e-4	0.0102618	0.00744072
chr5	116052102	116052195	6777490	0	-	0.397849	(0.39,0.42]	chr5	520016	3	EXON_PSEUDO	EXON_PSEUDO	CTD-2287O16.1	ENSG00000185641.6	ENST00000469891.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	218	2	3.61199	4.071595	4.5312	1.22856e-8	7.4305e-12	1.01118e-6	1.3349e-9
chr17	29263638	29263738	16490905	0	-	0.31	(0.29,0.33]	chr17	1348880	79	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.93737	4.071325	5.20528	0.00826984	2.18753e-5	0.0534766	5.75389e-4
chr1	144412575	144412657	443162	0	+	0.512195	(0.49,0.53]	chr1	43779	1	EXON_SMALL	EXON_SMALL	RNVU1-15	ENSG00000207205.1	ENST00000384476.1	snRNA	snRNA	snRNA	snRNA	1	28	2	3.15207	4.071205	4.99034	0.00347189	1.6002e-4	0.0286293	0.00286408
chr12	57821813	57821912	13358217	0	-	0.525253	(0.49,0.53]	chr12	1053218	20	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.15207	4.071205	4.99034	0.00347189	1.6002e-4	0.0286293	0.00286408
chr20	32195661	32195760	17941027	0	-	0.515152	(0.49,0.53]	chr20	1519244	33	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.15207	4.071205	4.99034	0.00347189	1.6002e-4	0.0286293	0.00286408
chr12	57530688	57530775	13356842	0	-	0.505747	(0.49,0.53]	chr12	1052763	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	3.35133	4.071095	4.79086	0.00150139	4.20783e-4	0.0152367	0.00611538
chr12	120127478	120127570	13578981	0	-	0.5	(0.49,0.53]	chr12	1068517	4	UTR3	UTR3:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.35133	4.071095	4.79086	0.00150139	4.20783e-4	0.0152367	0.00611538
chr4	173633727	173633819	5798646	0	-	0.5	(0.49,0.53]	chr4	456532	1	EXON_PSEUDO	EXON_PSEUDO	RANP6	ENSG00000213370.3	ENST00000413691.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	3.35133	4.071095	4.79086	0.00150139	4.20783e-4	0.0152367	0.00611538
chr5	139614860	139614913	6250445	0	+	0.301887	(0.29,0.33]	chr5	487099	1	CDS	CDS:EXON_MRNA	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	2.90642	4.07105	5.23568	1.07173e-4	3.41326e-9	0.0020647	3.06597e-7
chr3	12900208	12900304	4042323	0	-	0.34375	(0.33,0.36]	chr3	339376	9	UTR3	UTR3:EXON_MRNA:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	3.83586	4.07098	4.3061	1.7178e-4	1.56054e-7	0.00302124	8.21059e-6
chr12	120698814	120698912	13117494	0	+	0.520408	(0.49,0.53]	chr12	1024005	24	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.8671	4.070935	5.27477	0.0100489	4.14521e-5	0.0623334	8.8376e-4
chr19	49537032	49537118	17371136	0	+	0.569767	(0.53,0.59]	chr19	1443247	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000597801.1:ENST00000593644.1:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	3.97791	4.07087	4.16383	0.00659193	2.51849e-6	0.0454205	8.73415e-5
chr17	47680076	47680134	16251961	0	+	0.482759	(0.455,0.49]	chr17	1316751	2	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.66563	4.07081	5.47599	0.0043075	7.64978e-6	0.0334284	2.4151e-4
chr16	16252432	16252522	15569008	0	+	0.488889	(0.455,0.49]	chr16	1232949	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1:ENST00000570519.5:ENST00000576427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	3.81275	4.07079	4.32883	0.0138827	6.31002e-6	0.0760883	1.88287e-4
chr14	69885873	69885962	14688048	0	-	0.573034	(0.53,0.59]	chr14	1150336	7	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	58	2	3.62204	4.070740000000001	4.51944	4.3021e-4	2.00484e-6	0.00620274	7.16652e-5
chr8	103730094	103730194	9529727	0	+	0.47	(0.455,0.49]	chr8	724411	134	INTRON	INTRON	RIMS2	ENSG00000176406.23	ENST00000666250.1:ENST00000668113.1:ENST00000504942.6:ENST00000632716.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.77785	4.07046	4.36307	0.00218641	9.38535e-6	0.0208941	2.61344e-4
chr20	49076979	49077064	17811666	0	+	0.352941	(0.33,0.36]	chr20	1506534	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.15976	4.070405	4.98105	0.00437542	1.32493e-4	0.0340502	0.00227943
chrX	3927984	3928083	18933072	0	-	0.353535	(0.33,0.36]	chrX	1613536	74	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	3.15976	4.070405	4.98105	0.00437542	1.32493e-4	0.0340502	0.00227943
chr8	144318460	144318513	10148357	0	-	0.509434	(0.49,0.53]	chr8	763478	1	CDS	CDS:EXON_MRNA	DGAT1	ENSG00000185000.12	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5:ENST00000531896.5:ENST00000525371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.15044	4.07039	4.99034	4.32676e-4	1.6002e-4	0.00583708	0.00286408
chr16	21957416	21957491	15586752	0	+	0.36	(0.33,0.36]	chr16	1235414	1	CDS	CDS:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000630839.2:ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5:ENST00000618892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	3.14772	4.07026	4.9928	6.79194e-4	3.29916e-8	0.00876781	2.16154e-6
chr5	65824507	65824606	6004069	0	+	0.363636	(0.36,0.39]	chr5	470356	17	UTR3	UTR3:EXON_MRNA:INTRON	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000509935.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.89837	4.070155	4.24194	0.00276729	9.25116e-5	0.0247437	0.00169222
chr5	140445897	140445975	6254256	0	+	0.371795	(0.36,0.39]	chr5	487500	3	CDS	CDS:UTR5:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000532219.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.89837	4.070155	4.24194	0.00276729	9.25116e-5	0.0247437	0.00169222
chr6	69676157	69676257	7787751	0	-	0.37	(0.36,0.39]	chr6	596290	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000651675.1:ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.89837	4.070155	4.24194	0.00276729	9.25116e-5	0.0247437	0.00169222
chr2	180873048	180873140	3053603	0	-	0.467391	(0.455,0.49]	chr2	270960	3	EXON_PSEUDO	EXON_PSEUDO	FTH1P20	ENSG00000226564.1	ENST00000434913.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	121	2	2.88121	4.070025	5.25884	1.57495e-4	2.28833e-11	0.002844	3.64879e-9
chr11	64243254	64243311	11979724	0	+	0.649123	(0.59,1]	chr11	918925	2	CDS	CDS:UTR3:EXON_MRNA	FKBP2:RP11-783K16.16	ENSG00000173486.14:ENSG00000286264.2	ENST00000536642.5:ENST00000541388.1:ENST00000309366.9:ENST00000652762.2:ENST00000449942.6:ENST00000650773.1:ENST00000652094.1:ENST00000535135.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.42324	4.06992	5.7166	0.0116918	5.56053e-5	0.0686664	0.0011271
chr12	8081073	8081172	13193505	0	-	0.30303	(0.29,0.33]	chr12	1033556	8	EXON_MRNA	EXON_MRNA	RP11-69M1.6	ENSG00000279865.1	ENST00000624929.1	TEC	TEC	TEC	TEC	7	100	2	3.3764	4.06992	4.76344	1.02344e-5	9.54411e-11	3.0736e-4	1.30477e-8
chrX	154432930	154432971	18917878	0	+	0.609756	(0.59,1]	chrX	1611902	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	3.27003	4.0699000000000005	4.86977	0.00246014	3.45884e-4	0.0230058	0.00486309
chr17	59666796	59666886	16295296	0	+	0.455556	(0.455,0.49]	chr17	1321674	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	147	2	3.20479	4.069875	4.93496	6.15001e-6	2.42641e-11	2.0185e-4	3.84089e-9
chr3	187043225	187043310	3959729	0	+	0.588235	(0.53,0.59]	chr3	334001	6	CDS	CDS:EXON_MRNA:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000464827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	4.00393	4.06981	4.13569	0.0108084	2.50241e-5	0.064368	5.82427e-4
chr6	170577459	170577558	8091210	0	-	0.292929	(0.29,0.33]	chr6	618054	23	UTR3	UTR3:EXON_MRNA	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000543284.1:ENST00000167218.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.62025	4.06981	5.51937	0.00573581	2.69449e-6	0.0417422	1.01443e-4
chr1	1049235	1049307	2369	0	+	0.708333	(0.59,1]	chr1	543	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000492947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	132	2	3.70806	4.06978	4.4315	5.14321e-4	3.84288e-7	0.00719062	1.76177e-5
chr21	29056321	29056397	18201934	0	-	0.289474	[0,0.29]	chr21	1544698	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT8	ENSG00000156261.13	ENST00000432178.5:ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	1.94841	4.069694999999999	6.19098	0.0427374	2.63546e-8	0.168094	1.78502e-6
chr5	33454944	33454981	5927379	0	+	0.459459	(0.455,0.49]	chr5	464387	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000505012.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	4.0204	4.06948	4.1185600000000004	0.00736097	2.49433e-5	0.0490627	5.8178e-4
chr12	54241754	54241854	13342944	0	-	0.39	(0.36,0.39]	chr12	1049603	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6:ENST00000547872.1:ENST00000550411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	68	2	2.9102	4.06932	5.22844	5.15161e-4	4.38129e-9	0.00719513	3.79596e-7
chr1	149840916	149840986	1286937	0	-	0.614286	(0.59,1]	chr1	127829	2	CDS	CDS:EXON_MRNA	H3C14	ENSG00000203811.1	ENST00000369158.1	protein_coding	protein_coding	protein_coding	protein_coding	4	178	2	3.33465	4.069145	4.80364	2.51362e-4	3.96644e-8	0.00379143	2.79893e-6
chr6	53267778	53267873	7740159	0	-	0.4	(0.39,0.42]	chr6	594337	5	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.48908	4.06913	5.64918	0.0101318	3.47137e-6	0.0626311	1.13687e-4
chr7	105819491	105819578	8450362	0	+	0.655172	(0.59,1]	chr7	645473	1	EXON_PSEUDO	EXON_PSEUDO	CTA-351J1.1	ENSG00000226624.1	ENST00000442083.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	186	2	3.66286	4.069005	4.47515	9.5205e-6	2.85796e-7	2.91708e-4	1.37303e-5
chr22	37967624	37967715	18365453	0	+	0.571429	(0.53,0.59]	chr22	1562359	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	POLR2F:MIR6820	ENSG00000100142.16:ENSG00000284289.1	ENST00000484894.5:ENST00000407936.5:ENST00000443002.5:ENST00000442738.7:ENST00000483713.5:ENST00000492213.5:ENST00000405557.5:ENST00000470701.1:ENST00000611508.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	31	2	3.47419	4.068835	4.66348	0.00107799	8.75273e-4	0.0118238	0.0106963
chr3	143121314	143121413	3793699	0	+	0.555556	(0.53,0.59]	chr3	323989	5	CDS	CDS:EXON_MRNA	CHST2	ENSG00000175040.6	ENST00000309575.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.02054	4.068805	5.11707	0.00577011	1.35965e-4	0.0426551	0.00231202
chr7	100678097	100678164	8428127	0	+	0.567164	(0.53,0.59]	chr7	643345	1	CDS	CDS:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000451587.5:ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000431068.5:ENST00000393924.1:ENST00000469287.5:ENST00000470354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.02054	4.068805	5.11707	0.00577011	1.35965e-4	0.0426551	0.00231202
chr10	103521723	103521823	11234993	0	+	0.52	(0.49,0.53]	chr10	856087	269	INTRON	INTRON	NEURL1	ENSG00000107954.10	ENST00000369780.8	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.60116	4.068785	5.53641	0.0056515	3.32616e-10	0.0422191	3.95379e-8
chr19	55695256	55695356	17397585	0	+	0.69	(0.59,1]	chr19	1449020	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	EPN1	ENSG00000063245.15	ENST00000270460.11:ENST00000085079.11:ENST00000411543.6:ENST00000589704.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.69477	4.0685649999999995	5.44236	0.020208	2.02004e-4	0.0978331	0.00317801
chr5	178055756	178055853	6410845	0	+	0.639175	(0.59,1]	chr5	498581	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	FAM153CP:RP11-889L3.1	ENSG00000204677.13:ENSG00000218227.3	ENST00000652765.1:ENST00000651508.1:ENST00000652706.2:ENST00000511189.3:ENST00000652372.1:ENST00000651413.2:ENST00000651496.2:ENST00000652760.2:ENST00000651248.2:ENST00000662167.1:ENST00000652262.2:ENST00000669380.1:ENST00000652571.2:ENST00000651447.2:ENST00000651969.2:ENST00000668044.1:ENST00000663123.1:ENST00000651697.2:ENST00000652167.1:ENST00000652694.2:ENST00000663505.1:ENST00000667131.1:ENST00000651398.2:ENST00000511511.6:ENST00000506096.6:ENST00000651406.1:ENST00000652057.1:ENST00000652464.2:ENST00000511819.6:ENST00000477964.1	lncRNA	retained_intron	lncRNA:transcribed_processed_pseudogene	retained_intron:lncRNA:transcribed_processed_pseudogene	1	43	2	3.06258	4.068555	5.07453	0.00616167	0.00117617	0.0438642	0.0132131
chr7	44830756	44830850	8800328	0	-	0.510638	(0.49,0.53]	chr7	671366	2	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.76099	4.06761	4.37423	2.00194e-4	4.77238e-6	0.0034021	1.49327e-4
chr13	114324915	114325012	13913395	0	+	0.515464	(0.49,0.53]	chr13	1091008	11	CDS	CDS:EXON_MRNA:INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000361283.4:ENST00000646155.1:ENST00000643483.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.1011	4.067455	5.03381	5.69237e-4	1.49689e-4	0.00778538	0.0024973
chr8	18058834	18058891	9732820	0	-	0.368421	(0.36,0.39]	chr8	736289	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.63115	4.06705	5.50295	0.0245975	7.4907e-6	0.114841	2.17853e-4
chr16	69150812	69150904	15721694	0	+	0.48913	(0.455,0.49]	chr16	1251829	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000569615.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.3605	4.06684	4.77318	0.00147278	4.7888e-4	0.0157578	0.00628636
chr19	12881061	12881152	17471792	0	-	0.615385	(0.59,1]	chr19	1463265	2	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000592506.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.93698	4.06673	5.19648	0.0015925	7.35336e-4	0.0159023	0.00921643
chr4	120065744	120065818	5621526	0	-	0.405405	(0.39,0.42]	chr4	448099	2	CDS	CDS:EXON_MRNA:INTRON	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000511295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	3.05461	4.066565	5.07852	8.55091e-4	1.02164e-4	0.0105173	0.00183311
chr6	18222090	18222188	7071029	0	+	0.326531	(0.29,0.33]	chr6	541273	2	UTR3	UTR3:EXON_MRNA	KDM1B	ENSG00000165097.16	ENST00000650836.2:ENST00000449850.2:ENST00000297792.9:ENST00000642162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.67277	4.066465	5.46016	0.0255386	7.10374e-6	0.117089	2.0881e-4
chr2	167815041	167815136	2997777	0	-	0.568421	(0.53,0.59]	chr2	265435	4	EXON_LNCRNA	EXON_LNCRNA	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	3.0099	4.0664549999999995	5.12301	0.00600486	1.2852e-4	0.042887	0.00241206
chr3	50606860	50606953	4179538	0	-	0.537634	(0.53,0.59]	chr3	352073	5	UTR3	UTR3:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.46349	4.066425000000001	4.66936	0.00103174	9.2216e-4	0.0121443	0.0104432
chr5	72199874	72199972	6027794	0	+	0.540816	(0.53,0.59]	chr5	472560	62	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.46349	4.066425000000001	4.66936	0.00103174	9.2216e-4	0.0121443	0.0104432
chr10	22326889	22326986	10962176	0	+	0.402062	(0.39,0.42]	chr10	834287	1	CDS	CDS:UTR3:EXON_MRNA	COMMD3-BMI1:BMI1	ENSG00000269897.5:ENSG00000168283.14	ENST00000602390.5:ENST00000417470.1:ENST00000376663.8:ENST00000602523.1:ENST00000456675.2:ENST00000442508.5:ENST00000416820.5:ENST00000602358.5:ENST00000443519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	3.02517	4.06639	5.10761	8.3811e-4	5.12039e-5	0.00981548	0.00114668
chr14	68789532	68789632	14684726	0	-	0.56	(0.53,0.59]	chr14	1149952	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ZFP36L1	ENSG00000185650.10	ENST00000555997.1:ENST00000439696.3:ENST00000336440.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.79311	4.066295	5.33948	6.84253e-4	4.08763e-5	0.00836671	9.64741e-4
chr1	941406	941482	1677	0	+	0.644737	(0.59,1]	chr1	311	1	SS5_PROX	SS5_PROX:INTRON	SAMD11	ENSG00000187634.13	ENST00000616016.5:ENST00000618323.5:ENST00000342066.8:ENST00000616125.5:ENST00000618779.5:ENST00000622503.5:ENST00000618181.5:ENST00000617307.5:ENST00000341065.8:ENST00000455979.1:ENST00000478729.1:ENST00000474461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr11	65538110	65538182	11985180	0	+	0.666667	(0.59,1]	chr11	920490	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCYL1	ENSG00000142186.17	ENST00000525364.5:ENST00000270176.10:ENST00000420247.6:ENST00000533862.5:ENST00000524944.5:ENST00000527009.5:ENST00000279270.10:ENST00000528545.1:ENST00000534462.1:ENST00000532290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr16	81705498	81705551	15772040	0	+	0.603774	(0.59,1]	chr16	1255583	1	CDS	CDS:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000398040.8:ENST00000561605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr17	44375653	44375716	16558024	0	-	0.698413	(0.59,1]	chr17	1359424	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr19	18905575	18905629	17501205	0	-	0.648148	(0.59,1]	chr19	1468478	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr19	49670397	49670488	17371971	0	+	0.758242	(0.59,1]	chr19	1443466	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr2	85394822	85394892	2770349	0	-	0.7	(0.59,1]	chr2	245719	2	UTR3	UTR3:EXON_MRNA	CAPG	ENSG00000042493.16	ENST00000263867.9:ENST00000453973.5:ENST00000409921.5:ENST00000409670.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr8	144360336	144360414	9652292	0	+	0.641026	(0.59,1]	chr8	731966	3	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.98751	4.06617	4.14483	0.0301044	0.0183207	0.129773	0.0945306
chr1	154323725	154323794	480262	0	+	0.681159	(0.59,1]	chr1	49807	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AQP10	ENSG00000143595.13	ENST00000355197.4:ENST00000324978.8:ENST00000484864.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr1	203721267	203721338	669686	0	+	0.591549	(0.59,1]	chr1	67478	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr11	2908232	2908330	11769256	0	+	0.612245	(0.59,1]	chr11	900363	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000485423.1:ENST00000492567.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr11	47240148	47240215	12385623	0	-	0.626866	(0.59,1]	chr11	956569	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACP2	ENSG00000134575.13	ENST00000672073.1:ENST00000672636.2:ENST00000256997.9:ENST00000672351.1:ENST00000529444.7:ENST00000673184.1:ENST00000527256.7:ENST00000672075.1:ENST00000533929.7:ENST00000672728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr12	110430201	110430282	13537386	0	-	0.654321	(0.59,1]	chr12	1064863	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-478C19.2:HMGA1P3	ENSG00000258210.1:ENSG00000258011.2	ENST00000550231.1:ENST00000549577.2	lncRNA	retained_intron	lncRNA:processed_pseudogene	retained_intron:processed_pseudogene	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr19	16523051	16523130	17491272	0	-	0.632911	(0.59,1]	chr19	1466440	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6:ENST00000544299.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr8	143871878	143871978	10146557	0	-	0.66	(0.59,1]	chr8	762990	139	CDS	CDS:EXON_MRNA	EPPK1	ENSG00000261150.3	ENST00000615648.2:ENST00000568225.2	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	4.01545	4.066085	4.11672	0.0251889	0.0222273	0.114168	0.105595
chr1	196672977	196673070	640803	0	+	0.419355	(0.39,0.42]	chr1	64426	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000496761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.88836	4.066025	5.24369	0.0102432	4.15285e-5	0.062872	8.8376e-4
chrX	47202155	47202253	18686773	0	+	0.459184	(0.455,0.49]	chrX	1593207	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.06025	4.0659849999999995	5.07172	1.55878e-4	8.3067e-5	0.00259387	0.00171126
chr1	176061192	176061292	1381071	0	-	0.31	(0.29,0.33]	chr1	140451	145	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	3.20367	4.065695	4.92772	6.11481e-4	1.56621e-4	0.00818575	0.00259991
chr3	141925795	141925889	3790194	0	+	0.457447	(0.455,0.49]	chr3	323508	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000484727.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	79	2	4.03349	4.065695	4.0979	4.13044e-5	7.58387e-8	9.71332e-4	4.3988e-6
chr1	149887264	149887364	464898	0	+	0.51	(0.49,0.53]	chr1	46816	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC20	ENSG00000184260.6	ENST00000331380.4	protein_coding	protein_coding	protein_coding	protein_coding	9	192	2	3.40711	4.065685	4.72426	3.97231e-6	4.63085e-12	1.4013e-4	8.79968e-10
chr9	128993609	128993694	10482705	0	+	0.6	(0.59,1]	chr9	791113	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000467044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	3.19	4.06565	4.9413	0.0039188	0.00191468	0.0314356	0.0190905
chr19	14621633	14621720	17481469	0	-	0.402299	(0.39,0.42]	chr19	1464658	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRE3:ITGB1P1	ENSG00000131355.15:ENSG00000269378.1	ENST00000344373.8:ENST00000443157.6:ENST00000253673.6:ENST00000599900.5:ENST00000596032.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	64	2	3.76141	4.06554	4.36967	2.14058e-4	9.76301e-8	0.00359478	5.46732e-6
chr12	98593590	98593687	13036889	0	+	0.670103	(0.59,1]	chr12	1014989	1	UTR5	UTR5:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	89	2	3.78676	4.065525	4.34429	3.60514e-4	1.84713e-5	0.00544284	4.5469e-4
chr12	57231817	57231884	12902117	0	+	0.656716	(0.59,1]	chr12	1005191	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000557740.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000553324.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000557703.5:ENST00000554310.5:ENST00000553529.5:ENST00000554656.5:ENST00000557427.5:ENST00000553474.5:ENST00000555773.5:ENST00000555774.5:ENST00000449049.7:ENST00000554975.5:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000553949.1:ENST00000556737.1:ENST00000553868.1:ENST00000555213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.41536	4.06523	4.7151	0.00412279	0.00164655	0.0325842	0.0163443
chrX	49172000	49172096	18693757	0	+	0.604167	(0.59,1]	chrX	1594659	1	CDS_START	CDS_START:CDS:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6:ENST00000376322.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.41536	4.06523	4.7151	0.00412279	0.00164655	0.0325842	0.0163443
chr1	154255151	154255238	479985	0	+	0.494253	(0.49,0.53]	chr1	49681	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	131	2	3.71957	4.06517	4.41077	3.23463e-7	4.8374e-9	1.71045e-5	4.12233e-7
chr11	18403763	18403811	11831523	0	+	0.4375	(0.42,0.455]	chr11	906025	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	198	2	2.86135	4.065105	5.26886	6.94551e-7	1.25684e-11	2.92865e-5	2.32937e-9
chr3	184026863	184026962	4622775	0	-	0.464646	(0.455,0.49]	chr3	381686	6	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	27	2	3.49033	4.065055	4.63978	7.92678e-4	6.94032e-4	0.00933379	0.00876781
chr17	59682960	59683014	16295474	0	+	0.314815	(0.29,0.33]	chr17	1321734	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	3.6089	4.064695	4.52049	5.55178e-5	2.32541e-8	0.00123377	1.60638e-6
chr1	160358148	160358171	496813	0	+	0.521739	(0.49,0.53]	chr1	53513	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.44951	4.064615	4.67972	0.0405223	6.94757e-4	0.153343	0.00876781
chr5	175961272	175961353	6986727	0	-	0.506173	(0.49,0.53]	chr5	534009	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	THOC3	ENSG00000051596.10	ENST00000432305.6:ENST00000265097.9:ENST00000628318.2:ENST00000505969.1:ENST00000514861.5:ENST00000513482.1:ENST00000510300.5:ENST00000511062.5:ENST00000513118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.44951	4.064615	4.67972	0.0405223	6.94757e-4	0.153343	0.00876781
chrY	5338870	5338964	19342311	0	-	0.510638	(0.49,0.53]	chrY	1645390	13	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P2	ENSG00000235001.3	ENST00000422633.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.44951	4.064615	4.67972	0.0405223	6.94757e-4	0.153343	0.00876781
chr2	134949186	134949285	2079600	0	+	0.484848	(0.455,0.49]	chr2	195060	9	INTRON	INTRON	CCNT2	ENSG00000082258.13	ENST00000419781.5:ENST00000446247.5:ENST00000264157.10:ENST00000452839.5:ENST00000295238.10:ENST00000452521.1:ENST00000438691.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	2.40664	4.064575	5.72251	0.0123662	4.67061e-11	0.0705839	6.9126e-9
chr2	65205792	65205890	1853948	0	+	0.408163	(0.39,0.42]	chr2	175914	8	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	97	2	3.4851	4.064344999999999	4.64359	5.75571e-7	2.40762e-7	2.76816e-5	1.18574e-5
chr2	61880285	61880339	2691456	0	-	0.425926	(0.42,0.455]	chr2	240577	1	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	3.72956	4.0642499999999995	4.39894	3.61951e-6	3.07949e-7	1.29307e-4	1.46234e-5
chrX	48793234	48793297	18693017	0	+	0.587302	(0.53,0.59]	chrX	1594409	2	CDS	CDS:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	3.84214	4.06409	4.28604	9.59485e-6	6.5494e-6	2.93255e-4	1.94116e-4
chr21	45510063	45510162	18145927	0	+	0.727273	(0.59,1]	chr21	1539854	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	88	2	3.8973	4.063805	4.23031	2.15122e-4	3.46639e-5	0.00360503	7.61275e-4
chr11	107791181	107791276	12584843	0	-	0.326316	(0.29,0.33]	chr11	975961	3	UTR3	UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.76009	4.06377	4.36745	3.08518e-4	4.53307e-6	0.00476847	1.42727e-4
chr6	30728033	30728115	7659196	0	-	0.560976	(0.53,0.59]	chr6	584270	5	UTR3	UTR3:EXON_MRNA	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	3.56863	4.063615	4.5586	0.00161229	3.93456e-5	0.0169168	8.48445e-4
chr2	30746615	30746701	2583012	0	-	0.372093	(0.36,0.39]	chr2	232406	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	CAPN13:AC092569.2	ENSG00000162949.16:ENSG00000230118.1	ENST00000295055.12:ENST00000458085.6:ENST00000465450.2:ENST00000455192.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	1	25	2	2.84089	4.06337	5.28585	0.0128123	2.81625e-5	0.0719798	6.42183e-4
chr1	1233563	1233662	3041	0	+	0.484848	(0.455,0.49]	chr1	769	4	UTR3	UTR3:EXON_MRNA	B3GALT6	ENSG00000176022.7	ENST00000379198.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr12	119687034	119687126	13576772	0	-	0.478261	(0.455,0.49]	chr12	1068233	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr17	4908659	4908759	16419197	0	-	0.49	(0.455,0.49]	chr17	1337699	55	INTRON	INTRON	CHRNE	ENSG00000108556.10	ENST00000649830.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr2	27199869	27199963	2569348	0	-	0.457447	(0.455,0.49]	chr2	231180	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr6	105328927	105329026	7868606	0	-	0.484848	(0.455,0.49]	chr6	602752	2	CDS	CDS:EXON_MRNA	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr7	37375688	37375772	8231740	0	+	0.464286	(0.455,0.49]	chr7	627637	3	EXON_PSEUDO	EXON_PSEUDO	RPS10P14	ENSG00000213744.3	ENST00000440748.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr8	693012	693112	9655729	0	-	0.48	(0.455,0.49]	chr8	732569	4	SS3_PROX	SS3_PROX:INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr8	119731923	119732023	10046014	0	-	0.48	(0.455,0.49]	chr8	755931	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TAF2	ENSG00000064313.12	ENST00000378164.7:ENST00000529653.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chrX	71110225	71110295	19106755	0	-	0.485714	(0.455,0.49]	chrX	1625359	2	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	RP5-1091N2.12:IL2RG	ENSG00000285171.1:ENSG00000147168.13	ENST00000644911.1:ENST00000645518.1:ENST00000646106.1:ENST00000646505.1:ENST00000644022.1:ENST00000644708.1:ENST00000645266.1:ENST00000647492.1:ENST00000642473.1:ENST00000374202.7:ENST00000276110.6:ENST00000374188.7:ENST00000512747.3:ENST00000456850.6:ENST00000464642.5:ENST00000487883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.92463	4.06326	4.20189	0.0113417	0.00397662	0.0665375	0.0322851
chr22	41674432	41674532	18520230	0	-	0.46	(0.455,0.49]	chr22	1581350	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.89854	4.06324	5.22794	4.22484e-4	4.80556e-5	0.00613535	9.91058e-4
chr11	65096167	65096221	11982238	0	+	0.574074	(0.53,0.59]	chr11	919799	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VPS51	ENSG00000149823.9	ENST00000528588.5:ENST00000530773.5:ENST00000279281.8:ENST00000528050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr14	23047719	23047806	14528868	0	-	0.586207	(0.53,0.59]	chr14	1138405	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDH24	ENSG00000139880.20	ENST00000397359.7:ENST00000610348.1:ENST00000487137.7:ENST00000485922.2:ENST00000267383.5:ENST00000554034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr16	73940638	73940734	16026545	0	-	0.572917	(0.53,0.59]	chr16	1286934	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP56	ENSG00000284670.1	ENST00000641751.1	translated_processed_pseudogene	translated_processed_pseudogene	translated_processed_pseudogene	translated_processed_pseudogene	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr16	88521031	88521130	15805882	0	+	0.555556	(0.53,0.59]	chr16	1257865	45	INTRON	INTRON	ZFPM1	ENSG00000179588.9	ENST00000319555.8	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr19	57291270	57291366	17405772	0	+	0.552083	(0.53,0.59]	chr19	1450090	7	CDS	CDS:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr3	48629924	48629978	4168901	0	-	0.574074	(0.53,0.59]	chr3	349669	2	CDS	CDS:UTR3:EXON_MRNA	SLC26A6	ENSG00000225697.13	ENST00000420764.6:ENST00000395550.7:ENST00000337000.12:ENST00000307364.10:ENST00000383733.7:ENST00000489483.5:ENST00000358747.10:ENST00000480524.5:ENST00000455886.6:ENST00000496469.1:ENST00000421649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr7	141653214	141653310	8575266	0	+	0.541667	(0.53,0.59]	chr7	654204	4	UTR3	UTR3:EXON_MRNA	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000649365.1:ENST00000649014.1:ENST00000649286.2:ENST00000649790.1:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.81839	4.0630749999999995	4.30776	0.0184435	0.00407289	0.0945306	0.0324137
chr1	11285643	11285740	42469	0	+	0.556701	(0.53,0.59]	chr1	5109	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr1	21227930	21227985	887439	0	-	0.581818	(0.53,0.59]	chr1	91722	1	CDS	CDS:EXON_MRNA	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000374893.11:ENST00000649812.1:ENST00000357071.8:ENST00000436918.6:ENST00000264205.10	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr11	60919693	60919793	11967021	0	+	0.54	(0.53,0.59]	chr11	916453	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr14	92939896	92939994	14770869	0	-	0.530612	(0.53,0.59]	chr14	1156906	15	UTR3	UTR3:EXON_MRNA:INTRON	ITPK1	ENSG00000100605.17	ENST00000267615.11:ENST00000354313.7:ENST00000556603.6:ENST00000555495.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr16	14765157	14765235	15560584	0	+	0.576923	(0.53,0.59]	chr16	1231873	3	CDS	CDS:EXON_MRNA	NPIPA2	ENSG00000254852.8	ENST00000529166.5:ENST00000553201.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr16	90005553	90005650	16080754	0	-	0.536082	(0.53,0.59]	chr16	1292696	8	UTR3	UTR3:EXON_MRNA	DBNDD1	ENSG00000003249.15	ENST00000568838.2:ENST00000002501.11:ENST00000392973.8:ENST00000304733.8:ENST00000568662.2:ENST00000623401.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr17	47824204	47824304	16573218	0	-	0.55	(0.53,0.59]	chr17	1361400	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPL10	ENSG00000159111.13	ENST00000351111.7:ENST00000290208.11:ENST00000414011.1:ENST00000421763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr19	49981995	49982080	17608792	0	-	0.588235	(0.53,0.59]	chr19	1484593	5	UTR3	UTR3:EXON_MRNA:INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr2	107385446	107385542	2828016	0	-	0.541667	(0.53,0.59]	chr2	252354	1	EXON_LNCRNA	EXON_LNCRNA	LINC01885	ENSG00000237880.2	ENST00000414300.2:ENST00000654481.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr3	49130739	49130799	4172833	0	-	0.583333	(0.53,0.59]	chr3	350597	1	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr5	181320800	181320878	6418583	0	+	0.538462	(0.53,0.59]	chr5	499831	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	AC138035.2	ENSG00000238035.8	ENST00000499986.8:ENST00000604669.5:ENST00000604354.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr6	43052304	43052400	7706852	0	-	0.572917	(0.53,0.59]	chr6	591176	3	CDS	CDS:UTR3:EXON_MRNA	CUL7:RP1-20C7.7	ENSG00000044090.12:ENSG00000288564.1	ENST00000265348.9:ENST00000674134.1:ENST00000674100.1:ENST00000673753.1:ENST00000683493.1:ENST00000683160.1:ENST00000673761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr8	9137832	9137931	9689871	0	-	0.585859	(0.53,0.59]	chr8	734298	17	UTR3	UTR3:EXON_MRNA	PPP1R3B	ENSG00000173281.5	ENST00000310455.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr9	134339434	134339534	10505687	0	+	0.56	(0.53,0.59]	chr9	794894	124	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.82407	4.06301	4.30195	0.0179666	0.00421989	0.0918323	0.0328662
chr11	791626	791722	12227888	0	-	0.489583	(0.455,0.49]	chr11	943789	13	UTR3	UTR3:EXON_MRNA	SLC25A22	ENSG00000177542.11	ENST00000628067.3:ENST00000320230.9:ENST00000531214.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.46389	4.062995	4.6621	9.14164e-4	7.84472e-4	0.0110519	0.00927662
chr1	167399275	167399365	522756	0	+	0.488889	(0.455,0.49]	chr1	56129	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr1	201007675	201007774	1445394	0	-	0.474747	(0.455,0.49]	chr1	144921	16	INTRON	INTRON	KIF21B	ENSG00000116852.15	ENST00000461742.7:ENST00000332129.6:ENST00000360529.9:ENST00000422435.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr1	207685556	207685656	689240	0	+	0.46	(0.455,0.49]	chr1	69987	12	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr11	44107712	44107812	11926199	0	+	0.49	(0.455,0.49]	chr11	911521	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000531161.6:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr12	57602750	57602845	12903765	0	+	0.463158	(0.455,0.49]	chr12	1005691	13	UTR3	UTR3:EXON_MRNA	PIP4K2C	ENSG00000166908.18	ENST00000354947.10:ENST00000540759.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr15	44651759	44651849	15255063	0	-	0.466667	(0.455,0.49]	chr15	1202717	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr16	70565201	70565270	15730101	0	+	0.478261	(0.455,0.49]	chr16	1252993	3	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000563739.5:ENST00000562722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr17	7496277	7496346	16105097	0	+	0.463768	(0.455,0.49]	chr17	1296698	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr2	74969598	74969686	1893807	0	+	0.465909	(0.455,0.49]	chr2	179702	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE4	ENSG00000115350.12	ENST00000483063.2:ENST00000233699.8:ENST00000465242.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr2	195716912	195717005	2290739	0	+	0.473118	(0.455,0.49]	chr2	207616	4	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr4	163124617	163124717	5764514	0	-	0.47	(0.455,0.49]	chr4	454723	140	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr7	159018927	159019024	8639482	0	+	0.484536	(0.455,0.49]	chr7	660126	9	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr9	125360527	125360626	10461742	0	+	0.464646	(0.455,0.49]	chr9	788154	1	CDS	CDS:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chrX	55452934	55453034	18705660	0	+	0.48	(0.455,0.49]	chrX	1596430	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAGEH1	ENSG00000187601.5	ENST00000342972.3	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chrX	150763323	150763422	18909429	0	+	0.474747	(0.455,0.49]	chrX	1610045	7	UTR3	UTR3:EXON_MRNA:INTRON	MTMR1	ENSG00000063601.17	ENST00000485376.5:ENST00000370390.7:ENST00000445323.7:ENST00000488357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	4.0204	4.062875	4.10535	0.00736097	0.0064531	0.0490627	0.0450905
chr4	22727374	22727470	5356438	0	-	0.479167	(0.455,0.49]	chr4	429643	1	EXON_PSEUDO	EXON_PSEUDO	CDC42P6	ENSG00000237350.1	ENST00000421246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	3.24913	4.06273	4.87633	0.00239443	2.95855e-4	0.0225356	0.00432147
chr2	171517447	171517537	3014283	0	-	0.622222	(0.59,1]	chr2	267007	3	EXON_PSEUDO	EXON_PSEUDO	RPS15P4	ENSG00000233762.3	ENST00000433675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	163	2	3.53997	4.0627249999999995	4.5854799999999996	9.75839e-5	1.33666e-7	0.00193292	7.18989e-6
chr6	26234460	26234553	7647247	0	-	0.55914	(0.53,0.59]	chr6	582563	2	CDS	CDS:EXON_MRNA	H1-3	ENSG00000124575.7	ENST00000244534.7	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.0693	4.062695	6.05609	0.0160468	4.62627e-7	0.0860154	2.06661e-5
chr18	178939	179037	16715866	0	+	0.459184	(0.455,0.49]	chr18	1379094	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	3.17056	4.0623249999999995	4.95409	4.1243e-4	5.5347e-8	0.00604953	3.37102e-6
chr8	116863129	116863194	10035335	0	-	0.4	(0.39,0.42]	chr8	755474	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAD21	ENSG00000164754.15	ENST00000297338.7:ENST00000520992.5:ENST00000517485.5:ENST00000523547.1:ENST00000519837.5:ENST00000522699.1:ENST00000519469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	3.48557	4.0622	4.63883	5.68159e-4	9.58193e-6	0.0077844	2.6635e-4
chr12	52900587	52900661	13336948	0	-	0.540541	(0.53,0.59]	chr12	1048620	1	CDS	CDS:UTR3:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000547031.5:ENST00000549176.1:ENST00000546826.5:ENST00000547176.3:ENST00000548998.5:ENST00000546900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	73	2	2.85274	4.061805	5.27087	5.9416e-5	3.70974e-5	0.00130151	8.06532e-4
chr14	74781928	74782027	14401397	0	+	0.575758	(0.53,0.59]	chr14	1125425	7	CDS	CDS:EXON_MRNA	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.7898	4.061655	5.33351	0.0128364	4.35359e-5	0.0719798	0.00091744700000000005
chr17	40135839	40135937	16223160	0	+	0.459184	(0.455,0.49]	chr17	1311910	16	UTR3	UTR3:EXON_MRNA	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000339569.9:ENST00000580086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.71913	4.061415	5.4037	0.00103266	1.20695e-5	0.011478	3.52389e-4
chr17	78172381	78172477	16367724	0	+	0.645833	(0.59,1]	chr17	1329566	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.67996	4.06116	5.44236	0.00470478	2.02004e-4	0.0363963	0.00317801
chr5	74776671	74776768	6036811	0	+	0.350515	(0.33,0.36]	chr5	473553	1	UTR3	UTR3:EXON_MRNA	NSA2	ENSG00000164346.10	ENST00000296802.9:ENST00000610426.5:ENST00000515524.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.57153	4.06112	5.55071	0.00330025	4.61342e-6	0.028478	0.00014480800000000001
chr6	109382203	109382278	7886811	0	-	0.666667	(0.59,1]	chr6	603725	1	CDS	CDS:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000324953.9:ENST00000275080.11:ENST00000512821.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	140	2	3.25489	4.061105	4.86732	8.68018e-5	1.01106e-6	0.0016165	4.47422e-5
chr1	45693547	45693633	175255	0	+	0.5	(0.49,0.53]	chr1	22794	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.33099	4.060925	4.79086	4.20783e-4	1.59567e-4	0.00611538	0.00263091
chr12	14478394	14478472	12745294	0	+	0.525641	(0.49,0.53]	chr12	990795	2	CDS	CDS:EXON_MRNA	ATF7IP	ENSG00000171681.13	ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000540793.5:ENST00000535738.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.33099	4.060925	4.79086	4.20783e-4	1.59567e-4	0.00611538	0.00263091
chr1	43364737	43364794	968552	0	-	0.526316	(0.49,0.53]	chr1	102059	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	28	2	3.04107	4.06084	5.08061	0.00533879	1.00361e-4	0.0392268	0.00196575
chr14	69708761	69708847	14374958	0	+	0.581395	(0.53,0.59]	chr14	1123270	2	CDS	CDS:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.38191	4.06074	5.73957	0.00477439	3.90343e-6	0.0368489	1.26306e-4
chr3	23918511	23918583	3358549	0	+	0.486111	(0.455,0.49]	chr3	294133	2	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000643707.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	305	2	3.33554	4.060525	4.78551	9.99251e-9	1e-12	7.7523e-7	2.46312e-10
chr3	31636452	31636549	3392501	0	+	0.329897	(0.29,0.33]	chr3	295101	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.45373	4.06046	5.66719	0.0156405	1.7577e-6	0.084273700000000007	6.42329e-5
chr12	108662022	108662090	13530656	0	-	0.573529	(0.53,0.59]	chr12	1063977	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.65894	4.06029	5.46164	0.0193255	2.11519e-5	0.0943643	5.06522e-4
chr5	146286628	146286728	6280301	0	+	0.39	(0.36,0.39]	chr5	489484	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-449H3.3:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.18642	4.060115	4.93381	0.00359152	1.90009e-4	0.0302391	0.00302753
chr20	5117566	5117664	17887810	0	-	0.438776	(0.42,0.455]	chr20	1514083	2	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	3.42604	4.059985	4.69393	1.46189e-5	3.8764e-7	3.76794e-4	1.99378e-5
chr17	28468113	28468211	16175938	0	+	0.5	(0.49,0.53]	chr17	1305136	4	EXON_PSEUDO	EXON_PSEUDO	RPS7P1	ENSG00000263266.2	ENST00000571702.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	112	2	3.34224	4.059805	4.77737	6.47355e-6	2.88914e-9	2.10845e-4	2.64559e-7
chr2	27326474	27326559	2569953	0	-	0.6	(0.59,1]	chr2	231380	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GTF3C2	ENSG00000115207.13	ENST00000264720.7:ENST00000359541.6:ENST00000457098.5:ENST00000431028.5:ENST00000495298.1:ENST00000454704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	3.24972	4.0597449999999995	4.86977	0.00314037	0.00246014	0.0264943	0.0230058
chr2	202907864	202907959	3128964	0	-	0.4	(0.39,0.42]	chr2	276678	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000477723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.11549	4.0597	5.00391	0.00403491	9.12714e-5	0.032143	0.00182992
chr1	11748493	11748593	44132	0	+	0.65	(0.59,1]	chr1	5408	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1:ENST00000476309.5:ENST00000514733.5:ENST00000513739.5:ENST00000471765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	89	2	3.82178	4.059605	4.29743	2.76767e-4	2.81132e-5	0.00409634	7.10133e-4
chr2	200815340	200815428	2309305	0	+	0.397727	(0.39,0.42]	chr2	208924	1	CDS	CDS:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000450637.5:ENST00000410110.6:ENST00000452206.5:ENST00000409600.6:ENST00000464483.1:ENST00000409226.5:ENST00000452790.6:ENST00000447069.5:ENST00000419090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.22662	4.0594	4.89218	0.00257296	1.6518e-4	0.0229363	0.0029267300000000002
chr1	9735540	9735615	854671	0	-	0.546667	(0.53,0.59]	chr1	86264	2	CDS	CDS:UTR3:EXON_MRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.67993	4.05928	4.43863	0.00254763	3.22778e-4	0.0233955	0.0046122
chr2	175947550	175947621	3028320	0	-	0.56338	(0.53,0.59]	chr2	268185	2	CDS	CDS:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.67993	4.05928	4.43863	0.00254763	3.22778e-4	0.0233955	0.0046122
chr1	32169881	32169970	127005	0	+	0.505618	(0.49,0.53]	chr1	15628	1	CDS	CDS:UTR3:EXON_MRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.69037	4.059135	4.4279	0.0226513	0.00196987	0.10505	0.0193972
chr1	149519365	149519454	463144	0	+	0.494382	(0.49,0.53]	chr1	46384	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CH17-159N18.5:NBPF19	ENSG00000286185.1:ENSG00000271383.8	ENST00000621744.4:ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.69037	4.059135	4.4279	0.0226513	0.00196987	0.10505	0.0193972
chr6	10749201	10749268	7048644	0	+	0.522388	(0.49,0.53]	chr6	539776	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000475942.5:ENST00000461342.5:ENST00000492297.5:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.69037	4.059135	4.4279	0.0226513	0.00196987	0.10505	0.0193972
chr7	143862415	143862513	9116842	0	-	0.510204	(0.49,0.53]	chr7	696352	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.69037	4.059135	4.4279	0.0226513	0.00196987	0.10505	0.0193972
chr9	77721322	77721422	10699842	0	-	0.51	(0.49,0.53]	chr9	809635	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.69037	4.059135	4.4279	0.0226513	0.00196987	0.10505	0.0193972
chrX	50905522	50905608	18698804	0	+	0.5	(0.49,0.53]	chrX	1595351	2	EXON_PSEUDO	EXON_PSEUDO	H3P44	ENSG00000226881.5	ENST00000475267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.69037	4.059135	4.4279	0.0226513	0.00196987	0.10505	0.0193972
chr7	100607636	100607721	8428015	0	+	0.541176	(0.53,0.59]	chr7	643274	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000486440.5:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.99511	4.05906	5.12301	9.46531e-4	1.2852e-4	0.010681	0.00241206
chr17	68046596	68046682	16333853	0	+	0.302326	(0.29,0.33]	chr17	1325141	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2:ENST00000582898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	86	2	3.60068	4.0588750000000005	4.51707	8.26972e-6	1.24392e-9	2.57233e-4	1.27529e-7
chr1	109030234	109030319	396817	0	+	0.517647	(0.49,0.53]	chr1	38397	3	EXON_PSEUDO	EXON_PSEUDO	RP11-20O24.1	ENSG00000228665.2	ENST00000434429.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	2.99849	4.058585	5.11868	0.00630123	9.66505e-5	0.0445415	0.00175267
chr19	12560034	12560126	17236701	0	+	0.521739	(0.49,0.53]	chr19	1420584	6	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	2.99849	4.058585	5.11868	0.00630123	9.66505e-5	0.0445415	0.00175267
chr11	125577503	125577570	12194137	0	+	0.41791	(0.39,0.42]	chr11	940641	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000524723.5:ENST00000278903.11:ENST00000531636.5:ENST00000527842.6:ENST00000529765.5:ENST00000527235.6:ENST00000527520.6:ENST00000527131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.32811	4.058445	4.78878	0.00182819	4.27222e-4	0.0183913	0.00577513
chr11	117190622	117190681	12154584	0	+	0.525424	(0.49,0.53]	chr11	936281	1	CDS	CDS:EXON_MRNA:INTRON	SIDT2	ENSG00000149577.16	ENST00000324225.9:ENST00000620360.4:ENST00000278951.11:ENST00000525339.1:ENST00000431081.6:ENST00000628876.2:ENST00000529441.5:ENST00000526813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr14	87947802	87947878	14743092	0	-	0.526316	(0.49,0.53]	chr14	1154575	2	CDS	CDS:UTR3:EXON_MRNA	GALC	ENSG00000054983.17	ENST00000555000.5:ENST00000261304.7:ENST00000544807.6:ENST00000393569.6:ENST00000393568.8:ENST00000555179.1:ENST00000557316.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr16	78825643	78825733	15760894	0	+	0.522222	(0.49,0.53]	chr16	1254919	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	WWOX:RPS3P7	ENSG00000186153.18:ENSG00000243101.1	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000488662.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr17	67107254	67107340	16651005	0	-	0.511628	(0.49,0.53]	chr17	1369343	2	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr20	44197543	44197641	17981107	0	-	0.5	(0.49,0.53]	chr20	1523238	5	CDS	CDS:EXON_MRNA	OSER1	ENSG00000132823.11	ENST00000255174.3:ENST00000372970.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr4	165088534	165088602	5774306	0	-	0.514706	(0.49,0.53]	chr4	454976	2	CDS	CDS:EXON_MRNA	TMEM192	ENSG00000170088.14	ENST00000306480.11:ENST00000506087.5:ENST00000505095.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr6	31509909	31510002	7115422	0	+	0.505376	(0.49,0.53]	chr6	545681	1	UTR3	UTR3:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr8	86556259	86556338	9457685	0	+	0.506329	(0.49,0.53]	chr8	720289	3	CDS	CDS:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr9	94459243	94459312	10367788	0	+	0.507246	(0.49,0.53]	chr9	780589	1	CDS	CDS:UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.73494	4.0584299999999995	4.38192	0.0189345	0.00259709	0.0934721	0.0229695
chr11	5341173	5341267	12241504	0	-	0.5	(0.49,0.53]	chr11	946157	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	313	2	3.18996	4.0583849999999995	4.92681	3.9763e-7	1e-12	2.03864e-5	2.25522e-10
chr19	48616759	48616824	17602807	0	-	0.553846	(0.53,0.59]	chr19	1482905	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	13	262	2	3.48288	4.058355	4.63383	7.05452e-8	2.09684e-11	4.5832e-6	3.38055e-9
chr17	7113716	7113816	16428398	0	-	0.46	(0.455,0.49]	chr17	1339054	2	SS5_PROX	SS5_PROX:INTRON	ASGR2	ENSG00000161944.16	ENST00000254850.11:ENST00000355035.9:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.47671	4.058245	4.63978	0.0368644	6.94032e-4	0.145024	0.00876781
chr5	149854325	149854424	6293044	0	+	0.474747	(0.455,0.49]	chr5	490959	69	UTR3	UTR3:EXON_MRNA	PPARGC1B	ENSG00000155846.17	ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.47671	4.058245	4.63978	0.0368644	6.94032e-4	0.145024	0.00876781
chr7	16399676	16399776	8701636	0	-	0.46	(0.455,0.49]	chr7	664579	231	INTRON	INTRON	CRPPA	ENSG00000214960.11	ENST00000407010.7:ENST00000399310.3:ENST00000676325.1:ENST00000675257.1:ENST00000674759.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.47671	4.058245	4.63978	0.0368644	6.94032e-4	0.145024	0.00876781
chr19	34399270	34399335	17300556	0	+	0.615385	(0.59,1]	chr19	1429889	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	3.24666	4.058215	4.86977	0.00246014	3.09674e-5	0.0230058	6.93274e-4
chr11	59560386	59560476	12400522	0	-	0.477778	(0.455,0.49]	chr11	959362	2	EXON_LNCRNA	EXON_LNCRNA	LINC02739	ENSG00000255008.3	ENST00000661408.1	lncRNA	lncRNA	lncRNA	lncRNA	17	256	2	3.1004	4.057935	5.01547	2.46157e-7	1e-12	1.2106e-5	2.46312e-10
chr8	70597890	70597950	9881525	0	-	0.433333	(0.42,0.455]	chr8	746955	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.68545	4.057915	5.43038	0.00135767	8.55058e-10	0.0146849	9.14514e-8
chr11	4059302	4059396	11773650	0	+	0.553191	(0.53,0.59]	chr11	900864	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000528656.5:ENST00000526771.5:ENST00000527484.5:ENST00000533445.1:ENST00000533977.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	3.80806	4.05791	4.30776	0.00407289	1.65022e-4	0.0324137	0.00269147
chr6	33406591	33406665	7121905	0	+	0.540541	(0.53,0.59]	chr6	547589	1	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000494554.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.80806	4.05791	4.30776	0.00407289	1.65022e-4	0.0324137	0.00269147
chr19	38379239	38379322	17320723	0	+	0.626506	(0.59,1]	chr19	1433566	1	CDS	CDS:EXON_MRNA:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000591250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	116	2	3.79127	4.057665	4.32406	2.43308e-5	2.1425e-5	6.29277e-4	5.12077e-4
chr12	52950327	52950410	12884248	0	+	0.46988	(0.455,0.49]	chr12	1001694	1	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5:ENST00000548015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.26324	4.057395	5.85155	0.00868189	9.4476e-7	0.0558093	3.80876e-5
chr12	110327738	110327831	13085709	0	+	0.451613	(0.42,0.455]	chr12	1020497	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547050.1:ENST00000549840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	133	2	3.31013	4.05735	4.80457	8.58184e-6	1.00014e-10	2.65793e-4	1.35982e-8
chr1	32680169	32680258	130416	0	+	0.426966	(0.42,0.455]	chr1	16120	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	96	2	3.17467	4.0566949999999995	4.93872	3.24817e-6	5.07972e-8	1.07937e-4	3.4372e-6
chr1	45514872	45514933	978335	0	-	0.508197	(0.49,0.53]	chr1	103095	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	9	175	2	3.3788	4.056515	4.73423	1.55961e-6	2.33149e-11	6.40129e-5	3.71084e-9
chr10	95613802	95613863	11632942	0	-	0.393443	(0.39,0.42]	chr10	886002	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000485428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.9641	4.0564800000000005	4.14886	0.00415881	6.346e-5	0.0325842	0.00124725
chr18	36798521	36798609	17079120	0	-	0.465909	(0.455,0.49]	chr18	1403224	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5:ENST00000589049.5:ENST00000591823.5:ENST00000585635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	3.73589	4.05641	4.37693	2.30579e-4	4.5365e-6	0.00382267	1.42727e-4
chr4	109462993	109463086	5039094	0	+	0.430108	(0.42,0.455]	chr4	409917	2	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.7523	4.056134999999999	5.35997	0.0153283	2.41298e-5	0.0828908	5.6648e-4
chr9	112333570	112333664	10804041	0	-	0.765957	(0.59,1]	chr9	818509	2	UTR5	UTR5:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.77418	4.05609	5.338	0.0160729	3.196e-4	0.0860154	0.00457916
chr17	8222292	8222390	16432206	0	-	0.510204	(0.49,0.53]	chr17	1340375	1	EXON_LNCRNA	EXON_LNCRNA	LINC00324	ENSG00000178977.3	ENST00000315707.3	lncRNA	lncRNA	lncRNA	lncRNA	247	4200	2	3.51805	4.05543	4.59281	6.4857e-12	1e-12	1.18468e-9	2.46312e-10
chr1	196747110	196747161	641563	0	+	0.294118	(0.29,0.33]	chr1	64536	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.86651	4.05519	4.24387	0.0112245	0.00263476	0.0665375	0.0239118
chr10	22330998	22331095	10962227	0	+	0.298969	(0.29,0.33]	chr10	834314	16	UTR3	UTR3:EXON_MRNA	BMI1	ENSG00000168283.14	ENST00000376663.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.86651	4.05519	4.24387	0.0112245	0.00263476	0.0665375	0.0239118
chr14	103559522	103559621	14795432	0	-	0.323232	(0.29,0.33]	chr14	1159563	31	UTR3	UTR3:EXON_MRNA	BAG5	ENSG00000166170.11	ENST00000445922.2:ENST00000299204.6:ENST00000337322.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.86651	4.05519	4.24387	0.0112245	0.00263476	0.0665375	0.0239118
chr6	30619492	30619546	7111664	0	+	0.518519	(0.49,0.53]	chr6	544910	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	3.68246	4.05518	4.4279	0.00196987	3.06313e-4	0.0193972	0.00442973
chr3	13332292	13332384	4046356	0	-	0.413043	(0.39,0.42]	chr3	339570	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	2.85416	4.055165	5.25617	0.00225069	2.19168e-11	0.021386	3.50912e-9
chr20	36653226	36653324	17957210	0	-	0.438776	(0.42,0.455]	chr20	1521497	16	UTR3	UTR3:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.71365	4.05503	4.39641	2.63375e-4	4.03242e-6	0.00427022	1.29746e-4
chr16	21980645	21980700	15587005	0	+	0.4	(0.39,0.42]	chr16	1235482	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000561798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	3.33829	4.0546750000000005	4.77106	3.03764e-4	6.66806e-6	0.00472028	1.97401e-4
chr1	36341269	36341366	940167	0	-	0.639175	(0.59,1]	chr1	98983	18	UTR3	UTR3:EXON_MRNA	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr1	95117448	95117543	361351	0	+	0.747368	(0.59,1]	chr1	35624	2	UTR5	UTR5:EXON_MRNA	TLCD4	ENSG00000152078.10	ENST00000370203.9:ENST00000456991.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr1	151763047	151763146	1293827	0	-	0.69697	(0.59,1]	chr1	129437	2	CDS	CDS:EXON_MRNA	MRPL9	ENSG00000143436.11	ENST00000368830.8:ENST00000467306.5:ENST00000368829.3:ENST00000478926.5:ENST00000486707.5:ENST00000492684.5:ENST00000481777.5:ENST00000461182.1:ENST00000462783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr12	2858922	2859014	13174048	0	-	0.630435	(0.59,1]	chr12	1030731	3	CDS	CDS:EXON_MRNA	FOXM1	ENSG00000111206.13	ENST00000359843.8:ENST00000627656.2:ENST00000536066.1:ENST00000361953.7:ENST00000342628.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr15	34495110	34495208	14860724	0	+	0.714286	(0.59,1]	chr15	1167067	8	EXON_PSEUDO	EXON_PSEUDO	FSCN1P1	ENSG00000261559.1	ENST00000568912.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr17	40264864	40264958	16224188	0	+	0.595745	(0.59,1]	chr17	1312084	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr19	4657912	4658004	17433064	0	-	0.597826	(0.59,1]	chr19	1455328	5	UTR3	UTR3:EXON_MRNA:INTRON	MYDGF	ENSG00000074842.8	ENST00000599761.5:ENST00000262947.8	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr2	70987909	70988008	2728049	0	-	0.59596	(0.59,1]	chr2	243102	21	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chr9	91733278	91733357	10733124	0	-	0.696203	(0.59,1]	chr9	811987	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chrX	47571357	47571457	18687866	0	+	0.65	(0.59,1]	chrX	1593540	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARAF	ENSG00000078061.14	ENST00000377045.9:ENST00000470206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chrX	130014135	130014234	18857827	0	+	0.606061	(0.59,1]	chrX	1606885	13	CDS	CDS:EXON_MRNA	BCORL1	ENSG00000085185.16	ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.84557	4.054555	4.26354	0.0410704	0.0134233	0.163285	0.0743429
chrX	71300768	71300863	18730904	0	+	0.305263	(0.29,0.33]	chrX	1598445	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	46	2	2.15135	4.054365	5.95738	0.00209207	2.05428e-7	0.0204266	1.04036e-5
chr12	120469421	120469509	13580853	0	-	0.659091	(0.59,1]	chr12	1069077	1	CDS	CDS:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr17	3929327	3929386	16414178	0	-	0.661017	(0.59,1]	chr17	1336672	1	CDS	CDS:EXON_MRNA	ATP2A3	ENSG00000074370.18	ENST00000309890.11:ENST00000397041.8:ENST00000397035.7:ENST00000570773.5:ENST00000352011.7:ENST00000359983.7:ENST00000570845.5:ENST00000397043.7:ENST00000572116.1:ENST00000571245.5:ENST00000576957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr17	74440157	74440251	16350206	0	+	0.62766	(0.59,1]	chr17	1326483	4	CDS	CDS:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	GPRC5C	ENSG00000170412.18	ENST00000582444.1:ENST00000342648.9:ENST00000481232.2:ENST00000652232.1:ENST00000392627.7:ENST00000392628.7:ENST00000652294.1:ENST00000392629.3:ENST00000581590.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr19	1642168	1642268	17419850	0	-	0.65	(0.59,1]	chr19	1452732	94	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr19	55455259	55455318	17632682	0	-	0.677966	(0.59,1]	chr19	1489546	1	CDS	CDS:EXON_MRNA	ISOC2	ENSG00000063241.8	ENST00000438389.6:ENST00000425675.7:ENST00000085068.7:ENST00000590921.1:ENST00000587226.5:ENST00000589080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr20	32166303	32166398	17752643	0	+	0.610526	(0.59,1]	chr20	1498541	10	UTR3	UTR3:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr3	181702246	181702333	3940981	0	+	0.655172	(0.59,1]	chr3	330894	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SOX2-OT	ENSG00000242808.10	ENST00000660576.1:ENST00000643236.2:ENST00000646949.2:ENST00000665187.1:ENST00000656613.1:ENST00000645423.2:ENST00000654538.1:ENST00000646683.1:ENST00000493521.5:ENST00000665485.1:ENST00000646841.2:ENST00000671456.1:ENST00000469278.5:ENST00000670501.1:ENST00000646698.1:ENST00000597828.5:ENST00000491282.6:ENST00000667332.1:ENST00000498731.6:ENST00000476964.6:ENST00000657986.1:ENST00000661842.1:ENST00000665033.1:ENST00000492337.6:ENST00000642652.2:ENST00000485035.3:ENST00000665112.1:ENST00000498226.5:ENST00000476125.5:ENST00000645583.2:ENST00000642218.1:ENST00000654649.1:ENST00000596250.7:ENST00000600801.7:ENST00000477928.1:ENST00000642301.2:ENST00000466034.7:ENST00000595084.3:ENST00000629781.3:ENST00000627501.3:ENST00000598474.4:ENST00000629830.3:ENST00000629112.3:ENST00000630887.3:ENST00000628343.3:ENST00000600386.6:ENST00000597651.6:ENST00000627530.3:ENST00000595287.1:ENST00000626299.3:ENST00000599082.2:ENST00000593549.6:ENST00000628496.3:ENST00000600962.6:ENST00000630553.1:ENST00000600778.3:ENST00000626619.2:ENST00000629552.2:ENST00000631025.2:ENST00000629273.2:ENST00000625581.2:ENST00000628347.1:ENST00000628810.2:ENST00000593330.1:ENST00000627738.1	lncRNA	lncRNA	lncRNA	lncRNA	0	21	2	3.87333	4.054315	4.2353	0.0348991	0.0165254	0.141505	0.0873033
chr6	30489815	30489905	7111194	0	+	0.677778	(0.59,1]	chr6	544744	2	CDS	CDS:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5:ENST00000484194.1:ENST00000493699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	3.16732	4.05431	4.9413	0.00191468	5.6576e-4	0.0190905	0.00718071
chr1	169477326	169477412	1358219	0	-	0.5	(0.49,0.53]	chr1	138672	3	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.64528	4.05401	5.46274	0.0202736	1.13094e-5	0.0984041	3.3464e-4
chr7	128092503	128092593	8519384	0	+	0.444444	(0.42,0.455]	chr7	649827	6	UTR3	UTR3:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.70487	4.053815	4.40276	0.0017618	1.55091e-5	0.0180053	3.95473e-4
chr2	216137087	216137156	2380024	0	+	0.492754	(0.49,0.53]	chr2	213811	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	3.21317	4.05361	4.89405	3.08783e-4	2.57983e-4	0.00445935	0.00419998
chr1	58631037	58631135	1055016	0	-	0.510204	(0.49,0.53]	chr1	108133	3	EXON_PSEUDO	EXON_PSEUDO	RP4-592A1.2	ENSG00000185839.3	ENST00000427762.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.8233	4.05331	4.28332	0.00338762	1.44192e-4	0.0288632	0.00242438
chr14	55766440	55766538	14301039	0	+	0.602041	(0.59,1]	chr14	1117939	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-813I20.2:RPL13AP3	ENSG00000258784.1:ENSG00000177350.6	ENST00000554458.1:ENST00000487479.1:ENST00000494676.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	61	2	3.2366	4.053185	4.86977	0.00246014	4.06803e-4	0.0230058	0.00552995
chr15	64963519	64963619	15342359	0	-	0.53	(0.49,0.53]	chr15	1211237	6	UTR3	UTR3:EXON_MRNA	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.56183	4.052865	5.5439	0.0261296	8.44877e-6	0.118976	2.39255e-4
chr6	36855320	36855418	7682943	0	-	0.44898	(0.42,0.455]	chr6	589169	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.05889	4.052845	5.0468	0.00524205	1.33918e-4	0.0399155	0.00229039
chr15	20441740	20441840	15154084	0	-	0.43	(0.42,0.455]	chr15	1191834	7	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	15	2	3.70273	4.052745	4.40276	0.0215502	0.0017618	0.102904	0.0180053
chr7	129428628	129428726	8525505	0	+	0.44898	(0.42,0.455]	chr7	650808	17	UTR3	UTR3:EXON_MRNA	AHCYL2	ENSG00000158467.16	ENST00000325006.7:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.70273	4.052745	4.40276	0.0215502	0.0017618	0.102904	0.0180053
chr2	43224318	43224418	2618847	0	-	0.68	(0.59,1]	chr2	235739	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.85123	4.052515	5.2538	0.0022846	5.85045e-4	0.0209856	0.00793559
chr1	44760415	44760484	173994	0	+	0.565217	(0.53,0.59]	chr1	22377	3	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000423289.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	2.2614899999999998	4.052405	5.84332	0.00132759	1.90853e-6	0.0139137	7.59317e-5
chr10	32911447	32911526	11443995	0	-	0.481013	(0.455,0.49]	chr10	872636	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	3.24913	4.0524000000000004	4.85567	0.00239443	1.2429e-7	0.0225356	6.73437e-6
chr4	170604715	170604796	5795756	0	-	0.419753	(0.39,0.42]	chr4	456292	1	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	HSP90AA6P	ENSG00000181359.5	ENST00000325407.4:ENST00000506634.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	94	2	3.54423	4.05238	4.56053	1.48042e-6	1.86006e-8	6.1171e-5	1.33007e-6
chr16	85666161	85666254	15798006	0	+	0.55914	(0.53,0.59]	chr16	1257070	3	CDS	CDS:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1:ENST00000562659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.47	4.05237	5.63474	0.0089333	7.53339e-6	0.0567495	2.17987e-4
chrX	66203505	66203577	18717660	0	+	0.555556	(0.53,0.59]	chrX	1597017	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.90978	4.052235	5.19469	0.00857883	1.0578e-8	0.0552386	8.1539200000000005e-07
chr17	7580068	7580154	16105712	0	+	0.55814	(0.53,0.59]	chr17	1296984	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	79	2	3.00674	4.05223	5.09772	8.9408e-4	2.38604e-8	0.01086	1.64029e-6
chr3	4982835	4982929	3277638	0	+	0.521277	(0.49,0.53]	chr3	288720	1	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.68499	4.05215	4.41931	2.9991e-4	3.4941e-6	0.00472028	1.14163e-4
chr3	40312260	40312342	3429121	0	+	0.280488	[0,0.29]	chr3	298224	4	UTR3	UTR3:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.28583	4.05187	4.81791	0.00346525	1.38237e-7	0.0293796	7.38792e-6
chr3	13377455	13377508	4046835	0	-	0.377358	(0.36,0.39]	chr3	339684	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	3.18642	4.05161	4.9168	0.00359152	6.76244e-8	0.0302391	4.00219e-6
chr2	30501022	30501122	1708138	0	+	0.42	(0.39,0.42]	chr2	167617	114	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.99507	4.05134	5.10761	0.00637824	5.12039e-5	0.0449937	0.00114668
chr19	6441412	6441484	17442471	0	-	0.583333	(0.53,0.59]	chr19	1456912	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9:ENST00000593600.5:ENST00000600682.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.90978	4.05133	5.19288	0.00857883	9.22873e-5	0.0552386	0.0016906
chr3	98579445	98579540	4319531	0	-	0.305263	(0.29,0.33]	chr3	360252	1	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.64709	4.051215	4.45534	0.00110984	3.76873e-4	0.0127344	0.00523508
chr1	176061093	176061192	1381070	0	-	0.343434	(0.33,0.36]	chr1	140451	144	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.13748	4.051175000000001	4.96487	0.00379835	9.26851e-5	0.0307587	0.00185187
chr11	47468718	47468817	12386795	0	-	0.353535	(0.33,0.36]	chr11	956932	29	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.9738	4.0511	4.1284	0.00407303	5.94302e-5	0.0324137	0.00119141
chr12	56271698	56271789	13349833	0	-	0.340659	(0.33,0.36]	chr12	1051000	1	UTR3	UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.9738	4.050915	4.12803	5.94302e-5	2.90032e-5	0.00119141	7.24986e-4
chr1	16395430	16395527	72950	0	+	0.43299	(0.42,0.455]	chr1	8467	4	UTR3	UTR3:EXON_MRNA	SZRD1	ENSG00000055070.17	ENST00000401089.3:ENST00000401088.9:ENST00000492354.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr1	34050096	34050196	932245	0	-	0.44	(0.42,0.455]	chr1	98190	170	INTRON	INTRON	CSMD2	ENSG00000121904.18	ENST00000373381.9:ENST00000373388.6:ENST00000619121.4:ENST00000241312.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr1	89714486	89714585	346894	0	+	0.434343	(0.42,0.455]	chr1	34108	19	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr12	45065194	45065294	12847290	0	+	0.43	(0.42,0.455]	chr12	997736	135	INTRON	INTRON	RP11-478B9.1	ENSG00000257319.1	ENST00000548424.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr12	50814279	50814359	12875238	0	+	0.45	(0.42,0.455]	chr12	1000481	1	CDS	CDS:UTR3:EXON_MRNA	ATF1	ENSG00000123268.9	ENST00000262053.8:ENST00000551831.5:ENST00000552487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr15	58611052	58611107	15310817	0	-	0.454545	(0.42,0.455]	chr15	1208289	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr15	65259406	65259506	15344433	0	-	0.44	(0.42,0.455]	chr15	1211613	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PARP16	ENSG00000138617.16	ENST00000559805.1:ENST00000261888.10:ENST00000444347.2:ENST00000649807.2:ENST00000560149.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr3	139361080	139361151	4479499	0	-	0.450704	(0.42,0.455]	chr3	372217	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000676700.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr9	6941815	6941915	10174807	0	+	0.45	(0.42,0.455]	chr9	766353	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDM4C:RP11-403H13.1	ENSG00000107077.19:ENSG00000224972.1	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000445708.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr9	108939881	108939978	10410697	0	+	0.42268	(0.42,0.455]	chr9	784083	3	UTR3	UTR3:EXON_MRNA:INTRON	ABITRAM	ENSG00000119328.12	ENST00000322940.11:ENST00000374624.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.8515	4.05089	4.25028	0.0119089	0.00406761	0.0686664	0.032143
chr2	113951478	113951571	2007058	0	+	0.376344	(0.36,0.39]	chr2	190788	1	CDS	CDS:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	3.2928	4.0506400000000005	4.80848	2.65442e-4	1.65455e-7	0.004287	8.63103e-6
chr10	96533050	96533120	11640214	0	-	0.485714	(0.455,0.49]	chr10	886587	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.9967	4.050615	5.10453	0.00650423	1.5372e-8	0.0454205	1.1222e-6
chr22	19435862	19435962	18295310	0	+	0.49	(0.455,0.49]	chr22	1552704	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MRPL40	ENSG00000185608.9	ENST00000333130.4:ENST00000443660.5:ENST00000471259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.9967	4.050615	5.10453	0.00650423	1.5372e-8	0.0454205	1.1222e-6
chr10	70673184	70673284	11101459	0	+	0.46	(0.455,0.49]	chr10	844454	3	SS5_PROX	SS5_PROX:INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.12843	4.050504999999999	4.97258	0.00392855	1.84876e-4	0.0322851	0.00296795
chr6	79953004	79953095	7808121	0	-	0.483516	(0.455,0.49]	chr6	598268	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP63	ENSG00000218582.2	ENST00000405405.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	3.12843	4.050504999999999	4.97258	0.00392855	1.84876e-4	0.0322851	0.00296795
chr10	72917640	72917739	11568004	0	-	0.474747	(0.455,0.49]	chr10	880403	1	EXON_PSEUDO	EXON_PSEUDO	NPM1P24	ENSG00000215086.2	ENST00000428039.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	59	2	3.3841	4.050435	4.71677	1.17485e-4	3.31178e-7	0.00206023	1.74638e-5
chr5	97036315	97036415	6118954	0	+	0.4	(0.39,0.42]	chr5	478869	79	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.3298	4.05043	4.77106	0.00165391	3.03764e-4	0.0163614	0.00472028
chr3	12899821	12899917	4042319	0	-	0.552083	(0.53,0.59]	chr3	339376	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.57867	4.050174999999999	5.52168	0.00198261	1.48967e-5	0.0195088	3.81697e-4
chr1	153806508	153806607	1298772	0	-	0.393939	(0.39,0.42]	chr1	130472	19	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.56097	4.04978	4.53859	6.12149e-4	1.40716e-6	0.00818575	5.32869e-5
chr3	179779641	179779740	3930538	0	+	0.414141	(0.39,0.42]	chr3	330479	67	INTRON	INTRON	RP11-15L13.5:USP13	ENSG00000288698.1:ENSG00000058056.10	ENST00000680408.1:ENST00000680587.1:ENST00000263966.8:ENST00000680008.1:ENST00000496897.5:ENST00000679972.1:ENST00000679752.1:ENST00000681783.1:ENST00000681362.1:ENST00000680843.1:ENST00000681262.1:ENST00000679407.1:ENST00000679839.1:ENST00000679769.1:ENST00000679664.1:ENST00000680567.1:ENST00000680392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	3.56097	4.04978	4.53859	6.12149e-4	1.40716e-6	0.00818575	5.32869e-5
chr1	19345186	19345252	877835	0	-	0.545455	(0.53,0.59]	chr1	90674	1	CDS	CDS:UTR3:EXON_MRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.82407	4.049665	4.27526	0.0179666	1.03921e-5	0.0918323	2.85526e-4
chr20	35548591	35548674	17769382	0	+	0.542169	(0.53,0.59]	chr20	1501116	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5:ENST00000489071.5:ENST00000482338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	3.82407	4.049665	4.27526	0.0179666	1.03921e-5	0.0918323	2.85526e-4
chr13	28723170	28723268	13944892	0	-	0.44898	(0.42,0.455]	chr13	1094499	9	EXON_PSEUDO	EXON_PSEUDO	CYP51A1P2	ENSG00000233588.1	ENST00000419457.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	39	2	2.60504	4.049659999999999	5.49428	0.00201537	1.07978e-5	0.0197874	2.9314e-4
chr5	10414432	10414502	5875332	0	+	0.371429	(0.36,0.39]	chr5	462017	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	94	2	3.62606	4.049635	4.47321	2.19294e-7	3.79566e-8	1.23363e-5	2.43471e-6
chr9	122152326	122152408	10840196	0	-	0.451219	(0.42,0.455]	chr9	821165	2	CDS	CDS:EXON_MRNA	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.81137	4.0496	5.28783	0.0120386	2.17539e-5	0.0700876	5.73422e-4
chr16	87840445	87840473	16072544	0	-	0.357143	(0.33,0.36]	chr16	1291289	1	CDS	CDS:UTR5:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.7655	4.04947	5.33344	0.0175892	1.82386e-5	0.0918323	4.52248e-4
chr5	150408024	150408124	6914194	0	-	0.35	(0.33,0.36]	chr5	529140	3	INTRON	INTRON	CD74	ENSG00000019582.16	ENST00000009530.12:ENST00000377795.7:ENST00000523836.6:ENST00000523813.2:ENST00000524315.6:ENST00000518797.6:ENST00000353334.11:ENST00000523208.6:ENST00000517752.5:ENST00000522246.5:ENST00000517791.1:ENST00000522153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.7655	4.04947	5.33344	0.0175892	1.82386e-5	0.0918323	4.52248e-4
chr7	76302672	76302712	8343339	0	+	0.575	(0.53,0.59]	chr7	636370	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000675733.1:ENST00000674560.1:ENST00000675624.1:ENST00000675488.1:ENST00000676398.1:ENST00000447574.1:ENST00000674650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	3.76914	4.04943	4.32972	1.07544e-5	7.20871e-6	2.9314e-4	2.30406e-4
chr17	7580895	7580995	16105727	0	+	0.54	(0.53,0.59]	chr17	1296996	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584180.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	86	2	3.13198	4.04927	4.96656	1.01201e-4	6.94912e-8	0.00198127	4.08427e-6
chr13	52024391	52024488	13746359	0	+	0.350515	(0.33,0.36]	chr13	1082765	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ALG11	ENSG00000253710.5	ENST00000649708.2:ENST00000521508.2:ENST00000681053.1:ENST00000681047.1:ENST00000679544.1:ENST00000649340.2:ENST00000680793.1:ENST00000523764.1:ENST00000680950.1:ENST00000679359.1:ENST00000681226.1:ENST00000681145.1:ENST00000650049.2:ENST00000679495.1:ENST00000649651.2:ENST00000519151.1:ENST00000680058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.57559	4.049125	4.52266	0.0262108	8.34989e-4	0.117079	0.0102956
chr6	20493017	20493116	7075597	0	+	0.343434	(0.33,0.36]	chr6	541472	27	UTR3	UTR3:EXON_MRNA	E2F3	ENSG00000112242.15	ENST00000346618.8:ENST00000613242.4:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.57559	4.049125	4.52266	0.0262108	8.34989e-4	0.117079	0.0102956
chr6	45219363	45219463	7714976	0	-	0.34	(0.33,0.36]	chr6	592091	212	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.57559	4.049125	4.52266	0.0262108	8.34989e-4	0.117079	0.0102956
chr6	150882761	150882823	7487075	0	+	0.354839	(0.33,0.36]	chr6	572171	1	CDS	CDS:EXON_MRNA	MTHFD1L	ENSG00000120254.16	ENST00000611279.4:ENST00000367321.8:ENST00000367307.8:ENST00000367308.8:ENST00000618312.4:ENST00000441122.5:ENST00000423867.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.57559	4.049125	4.52266	0.0262108	8.34989e-4	0.117079	0.0102956
chr7	116903281	116903380	8478009	0	+	0.333333	(0.33,0.36]	chr7	647501	41	INTRON	INTRON	CAPZA2	ENSG00000198898.14	ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1:ENST00000628758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.57559	4.049125	4.52266	0.0262108	8.34989e-4	0.117079	0.0102956
chr8	123015248	123015347	10055908	0	-	0.353535	(0.33,0.36]	chr8	756437	22	UTR3	UTR3:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.57559	4.049125	4.52266	0.0262108	8.34989e-4	0.117079	0.0102956
chr16	16044603	16044680	15567757	0	+	0.519481	(0.49,0.53]	chr16	1232707	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.38097	4.04909	5.71721	0.0425419	2.77472e-6	0.167547	9.47025e-5
chr2	130172424	130172500	2874040	0	-	0.539474	(0.53,0.59]	chr2	257124	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000430682.5:ENST00000435455.6:ENST00000451542.5:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.89916	4.048995	5.19883	0.00890406	8.7034e-5	0.0565003	0.00177086
chr1	91720061	91720145	1164373	0	-	0.559524	(0.53,0.59]	chr1	114930	3	CDS	CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000529608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.5393	4.04895	4.5586	0.00161229	6.46017e-4	0.0169168	0.00799743
chr6	31689014	31689066	7661736	0	-	0.557692	(0.53,0.59]	chr6	584980	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000475742.5:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000471644.5:ENST00000477016.5:ENST00000498420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.5393	4.04895	4.5586	0.00161229	6.46017e-4	0.0169168	0.00799743
chr8	56978049	56978145	9836977	0	-	0.40625	(0.39,0.42]	chr8	744456	1	CDS	CDS:EXON_MRNA:INTRON	BPNT2	ENSG00000104331.9	ENST00000262644.9:ENST00000520392.1:ENST00000517461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.70591	4.048895	5.39188	0.0185716	1.75441e-5	0.0932453	4.38078e-4
chr11	62573842	62573938	12409160	0	-	0.635417	(0.59,1]	chr11	960980	1	UTR3	UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000532986.1:ENST00000534745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	882	2	3.06677	4.0488800000000005	5.03099	2.57829e-6	1e-12	9.7969e-5	2.25522e-10
chr11	62888593	62888693	11974497	0	+	0.67	(0.59,1]	chr11	918079	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	370	2	3.53123	4.048830000000001	4.56643	2.68106e-6	1.0689e-9	1.01083e-4	1.11021e-7
chr17	44351036	44351099	16234919	0	+	0.619048	(0.59,1]	chr17	1314575	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000588237.5:ENST00000589265.5:ENST00000586782.5:ENST00000639447.1:ENST00000590984.1:ENST00000586443.1:ENST00000589923.1:ENST00000585348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	3.8973	4.04883	4.20036	2.15122e-4	4.07557e-5	0.00360503	8.75066e-4
chr6	33203540	33203626	7121303	0	+	0.616279	(0.59,1]	chr6	547400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A7	ENSG00000112473.18	ENST00000374675.7:ENST00000374677.8:ENST00000463972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	3.8973	4.04883	4.20036	2.15122e-4	4.07557e-5	0.00360503	8.75066e-4
chr1	149832784	149832840	464746	0	+	0.607143	(0.59,1]	chr1	46790	1	CDS	CDS:EXON_MRNA	H4C14	ENSG00000270882.2	ENST00000578186.2:ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	160	2	2.61822	4.048195	5.47817	0.00201173	1.7493400000000002e-08	0.019022	1.37262e-6
chr11	61964549	61964637	12406725	0	-	0.340909	(0.33,0.36]	chr11	960789	4	UTR3	UTR3:EXON_MRNA:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	112	2	3.96838	4.048165	4.12795	9.44423e-7	2.22784e-9	4.21505e-5	2.11958e-7
chr1	184073152	184073248	601719	0	+	0.46875	(0.455,0.49]	chr1	62323	4	UTR3	UTR3:EXON_MRNA:INTRON	TSEN15	ENSG00000198860.14	ENST00000423085.7:ENST00000361641.6:ENST00000643231.1:ENST00000533373.6:ENST00000647437.1:ENST00000647465.1:ENST00000643916.1:ENST00000645668.2:ENST00000644145.1:ENST00000644592.1:ENST00000646297.2:ENST00000645963.2:ENST00000644479.1:ENST00000462677.3:ENST00000643702.1:ENST00000644815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	3.90873	4.04815	4.18757	3.66904e-6	4.43488e-7	1.30734e-4	1.99826e-5
chr20	32848728	32848826	17755860	0	+	0.438776	(0.42,0.455]	chr20	1498956	1	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.54838	4.04815	4.54792	9.66045e-4	5.9986e-4	0.0115185	0.0075062
chr4	144120489	144120547	5696650	0	-	0.37931	(0.36,0.39]	chr4	451555	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	15	217	2	3.63154	4.048095	4.46465	1.06907e-8	4.0713e-12	9.05355e-7	7.85187e-10
chr12	63822118	63822217	12916667	0	+	0.626263	(0.59,1]	chr12	1006815	2	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	49	2	3.8606	4.04795	4.2353	0.0165254	2.2997e-4	0.0873033	0.00352524
chr1	40073867	40073963	954674	0	-	0.385417	(0.36,0.39]	chr1	100850	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	3.86626	4.047545	4.22883	6.18583e-6	2.19295e-8	2.02643e-4	1.52497e-6
chr1	153992093	153992155	479599	0	+	0.387097	(0.36,0.39]	chr1	49578	1	UTR3	UTR3:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000643794.1:ENST00000493224.5:ENST00000477151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	3.86626	4.047545	4.22883	6.18583e-6	2.19295e-8	2.02643e-4	1.52497e-6
chr12	92143981	92144079	13467114	0	-	0.387755	(0.36,0.39]	chr12	1059071	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BTG1	ENSG00000133639.6	ENST00000256015.5:ENST00000673901.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.66978	4.0474049999999995	4.42503	0.00133228	3.25031e-4	0.0144372	0.00463603
chr16	75627809	75627894	16039065	0	-	0.388235	(0.36,0.39]	chr16	1288280	5	UTR3	UTR3:EXON_MRNA	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000569298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.6181	4.047295	5.47649	0.00176908	4.3709e-6	0.0172426	1.52262e-4
chr3	47056820	47056915	4158950	0	-	0.410526	(0.39,0.42]	chr3	347829	1	CDS	CDS:UTR3:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000445387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.60131	4.047275	4.49324	0.00108192	4.60576e-4	0.0124943	0.00611208
chr1	153667495	153667595	1298465	0	-	0.49	(0.455,0.49]	chr1	130410	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000368684.8:ENST00000368681.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.41991	4.04665	5.67339	0.00192426	2.05982e-6	0.0183914	8.10246e-5
chr9	34088349	34088449	10634764	0	-	0.54	(0.53,0.59]	chr9	803968	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	3.69065	4.0465800000000005	4.40251	3.04331e-4	4.48447e-6	0.00472028	1.41623e-4
chr17	59773753	59773819	16296307	0	+	0.560606	(0.53,0.59]	chr17	1321825	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000262291.9:ENST00000587945.1:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.89427	4.04655	5.19883	3.98634e-4	8.7034e-5	0.00546791	0.00177086
chr7	30626233	30626319	8203826	0	+	0.325581	(0.29,0.33]	chr7	625844	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.92065	4.04641	5.17217	0.0117842	6.18376e-9	0.0686664	5.12571e-7
chr19	14406405	14406481	17242504	0	+	0.618421	(0.59,1]	chr19	1421853	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.9891200000000002	4.04629	5.10346	0.00823979	8.40506e-4	0.0540283	0.00981548
chr6	160084105	160084184	7528746	0	+	0.594937	(0.59,1]	chr6	574924	3	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.9891200000000002	4.04629	5.10346	0.00823979	8.40506e-4	0.0540283	0.00981548
chr1	111183524	111183587	406208	0	+	0.333333	(0.33,0.36]	chr1	39906	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1:ENST00000483427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.56949	4.046075	4.52266	8.34989e-4	5.48184e-4	0.0102956	0.00697082
chr6	44233528	44233615	7161525	0	+	0.62069	(0.59,1]	chr6	553816	1	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1:ENST00000646878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.89474	4.04561	5.19648	0.00190546	7.35336e-4	0.018313	0.00921643
chr11	112088911	112089011	12136277	0	+	0.53	(0.49,0.53]	chr11	934884	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000640554.1:ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	3.88731	4.045535	4.20376	1.43152e-5	4.40111e-6	4.04062e-4	1.3969e-4
chr8	124999598	124999694	9595357	0	+	0.53125	(0.53,0.59]	chr8	727887	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	10	222	2	3.79115	4.04547	4.29979	1.09718e-6	6.47499e-11	4.76944e-5	9.24307e-9
chr11	119055492	119055545	12626554	0	-	0.433962	(0.42,0.455]	chr11	979826	1	CDS	CDS:UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000534233.5:ENST00000526656.5:ENST00000531968.5:ENST00000532421.5:ENST00000533381.5:ENST00000527038.6:ENST00000622474.4:ENST00000529174.1:ENST00000530467.5:ENST00000610597.1:ENST00000526354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.47379	4.045465	5.61714	0.00996858	4.98624e-6	0.0621728	1.54467e-4
chr7	77626704	77626801	8350208	0	+	0.505155	(0.49,0.53]	chr7	637034	1	CDS	CDS:EXON_MRNA	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.84493	4.0453600000000005	5.24579	5.26587e-4	4.073e-5	0.00679103	9.64741e-4
chr10	59792816	59792916	11517227	0	-	0.44	(0.42,0.455]	chr10	877718	42	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.41041	4.04511	4.67981	5.38444e-4	1.00299e-4	0.00744072	0.00180803
chr20	45419301	45419395	17801643	0	+	0.585106	(0.53,0.59]	chr20	1505096	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000638953.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639194.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.1234	4.044980000000001	4.96656	0.00390623	6.94912e-8	0.0322851	4.08427e-6
chr7	107953679	107953754	8987527	0	-	0.546667	(0.53,0.59]	chr7	687633	3	CDS	CDS:UTR3:EXON_MRNA	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	4.00393	4.04496	4.08599	0.0108084	3.38473e-5	0.064368	7.45971e-4
chr7	103515269	103515355	8963403	0	-	0.55814	(0.53,0.59]	chr7	686125	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.92573	4.04478	4.16383	0.00659193	8.62301e-5	0.0454205	0.00160749
chr3	38487493	38487592	3421787	0	+	0.525253	(0.49,0.53]	chr3	297512	43	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.54558	4.04474	5.5439	0.0024326	8.44877e-6	0.0228485	2.39255e-4
chr12	113390466	113390563	13101759	0	+	0.453608	(0.42,0.455]	chr12	1022448	20	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	3.31347	4.044615	4.77576	2.67134e-6	2.0936e-9	9.18481e-5	2.17236e-7
chr22	21622260	21622358	18303184	0	+	0.459184	(0.455,0.49]	chr22	1554195	7	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	71	2	3.135	4.044544999999999	4.95409	1.04065e-4	5.5347e-8	0.002022	3.37102e-6
chr1	244706870	244706968	804420	0	+	0.27551	[0,0.29]	chr1	80056	12	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.63488	4.044535	4.45419	0.00133426	7.12896e-4	0.0139317	0.00897774
chr8	56960513	56960612	9836796	0	-	0.262626	[0,0.29]	chr8	744432	27	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.63488	4.044535	4.45419	0.00133426	7.12896e-4	0.0139317	0.00897774
chrX	63350260	63350352	19088586	0	-	0.402174	(0.39,0.42]	chrX	1624067	2	CDS	CDS:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	27	2	3.75753	4.044415	4.3313	0.00209984	2.04026e-4	0.0204266	0.00320361
chr17	47669773	47669869	16251839	0	+	0.520833	(0.49,0.53]	chr17	1316698	2	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	79	2	3.94058	4.04441	4.14824	2.04708e-5	2.97978e-7	5.45523e-4	1.42351e-5
chr12	93575079	93575179	13019794	0	+	0.4	(0.39,0.42]	chr12	1013516	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000536696.6:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000551556.2:ENST00000551883.1:ENST00000549510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93975	4.044305	4.14886	0.0105893	0.00415881	0.0644466	0.0325842
chr14	49614314	49614405	14275598	0	+	0.395604	(0.39,0.42]	chr14	1115891	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LRR1	ENSG00000165501.17	ENST00000318317.8:ENST00000554869.5:ENST00000298288.11:ENST00000540712.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.93975	4.044305	4.14886	0.0105893	0.00415881	0.0644466	0.0325842
chr16	85589971	85590071	15797221	0	+	0.42	(0.39,0.42]	chr16	1256993	333	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93975	4.044305	4.14886	0.0105893	0.00415881	0.0644466	0.0325842
chr2	201272021	201272121	2311791	0	+	0.42	(0.39,0.42]	chr2	209289	4	SS5_PROX	SS5_PROX:INTRON	CASP8	ENSG00000064012.22	ENST00000264274.13:ENST00000392263.6:ENST00000432109.6:ENST00000264275.9:ENST00000471383.5:ENST00000450491.5:ENST00000392258.7:ENST00000447616.5:ENST00000358485.8:ENST00000392266.7:ENST00000413726.5:ENST00000437283.5:ENST00000490412.5:ENST00000339403.6:ENST00000323492.11:ENST00000673742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.93975	4.044305	4.14886	0.0105893	0.00415881	0.0644466	0.0325842
chr3	136331160	136331257	3763174	0	+	0.391753	(0.39,0.42]	chr3	321908	8	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000471595.5:ENST00000478469.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93975	4.044305	4.14886	0.0105893	0.00415881	0.0644466	0.0325842
chrX	53937141	53937234	19078814	0	-	0.397849	(0.39,0.42]	chrX	1623084	6	UTR3	UTR3:EXON_MRNA	PHF8	ENSG00000172943.20	ENST00000357988.9:ENST00000338154.11:ENST00000338946.10	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93975	4.044305	4.14886	0.0105893	0.00415881	0.0644466	0.0325842
chr2	182956527	182956593	3060228	0	-	0.348485	(0.33,0.36]	chr2	271327	2	CDS	CDS:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000493359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.47163	4.0440249999999995	5.61642	0.0129725	2.97369e-6	0.0724783	9.99199e-5
chr14	59498728	59498828	14321489	0	+	0.4	(0.39,0.42]	chr14	1119380	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	JKAMP	ENSG00000050130.18	ENST00000356057.9:ENST00000554754.5:ENST00000425728.6:ENST00000616435.5:ENST00000555491.5:ENST00000554271.5:ENST00000554795.1:ENST00000553941.5:ENST00000602482.5:ENST00000554721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.19588	4.04392	4.89196	0.00321212	2.62166e-4	0.0280721	0.0039188
chr1	220034913	220035013	1511365	0	-	0.39	(0.36,0.39]	chr1	151123	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	3.90371	4.043635	4.18356	5.05154e-7	3.75401e-7	2.49522e-5	1.72944e-5
chr1	12208120	12208220	47310	0	+	0.66	(0.59,1]	chr1	6130	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.92097	4.043365	5.16576	0.0102634	6.55716e-4	0.0628742	0.0080931
chr17	44324774	44324870	16557855	0	-	0.791667	(0.59,1]	chr17	1359371	6	UTR5	UTR5:EXON_MRNA	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5:ENST00000586633.5:ENST00000591151.1:ENST00000585523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.92097	4.043365	5.16576	0.0102634	6.55716e-4	0.0628742	0.0080931
chr11	78114265	78114322	12477861	0	-	0.438596	(0.42,0.455]	chr11	970742	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1:ENST00000530454.6:ENST00000525755.6:ENST00000532050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.17397	4.04305	4.91213	0.0031821	1.75074e-4	0.0267094	0.00306313
chr22	38495795	38495866	18509727	0	-	0.422535	(0.42,0.455]	chr22	1579992	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.17397	4.04305	4.91213	0.0031821	1.75074e-4	0.0267094	0.00306313
chr20	35542512	35542600	17769314	0	+	0.5	(0.49,0.53]	chr20	1501098	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000438317.5:ENST00000486268.5:ENST00000279052.10:ENST00000416206.5:ENST00000640748.1:ENST00000411577.5:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.52637	4.04283	4.55929	0.00116196	6.68602e-4	0.0130851	0.00820018
chr6	32155587	32155687	7118447	0	+	0.57	(0.53,0.59]	chr6	546920	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	2.45052	4.04263	5.63474	0.00355092	7.53339e-6	0.0300049	2.17987e-4
chr7	128754261	128754358	8521693	0	+	0.402062	(0.39,0.42]	chr7	650169	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	31	405	2	3.55579	4.042465	4.52914	1.57136e-10	1e-12	2.01477e-8	2.46312e-10
chr4	109533592	109533685	5039829	0	+	0.354839	(0.33,0.36]	chr4	410037	1	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.74502	4.04199	4.33896	0.00182033	2.19782e-4	0.0183913	0.00339463
chr9	32570959	32571052	10629239	0	-	0.333333	(0.33,0.36]	chr9	803165	1	CDS	CDS:EXON_MRNA:INTRON	NDUFB6	ENSG00000165264.11	ENST00000379847.8:ENST00000366466.5:ENST00000350021.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.74502	4.04199	4.33896	0.00182033	2.19782e-4	0.0183913	0.00339463
chrX	115703652	115703745	18834859	0	+	0.483871	(0.455,0.49]	chrX	1604659	10	EXON_PSEUDO	EXON_PSEUDO	EEF1GP5	ENSG00000234785.1	ENST00000434365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	34	2	2.63872	4.04177	5.44482	0.00510378	1.36044e-5	0.0390492	3.54469e-4
chr12	103941831	103941903	13056859	0	+	0.458333	(0.455,0.49]	chr12	1017341	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	451	2	2.57005	4.041675	5.5133	1.17549e-5	1e-12	3.46057e-4	2.25522e-10
chr7	128975876	128975935	9060381	0	-	0.474576	(0.455,0.49]	chr7	691785	2	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.57525	4.04165	4.50805	0.00122223	5.24878e-4	0.0135383	0.00677371
chr12	124810173	124810231	13600477	0	-	0.672414	(0.59,1]	chr12	1071717	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	3.45145	4.041255	4.63106	0.00537945	2.84387e-5	0.0406564	6.47887e-4
chr6	131650087	131650149	7402798	0	+	0.467742	(0.455,0.49]	chr6	567361	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.50904	4.04111	5.57318	0.0310515	6.11867e-6	0.131262	1.83393e-4
chr3	136326856	136326910	3763124	0	+	0.407407	(0.39,0.42]	chr3	321885	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	3.93737	4.04107	4.14477	7.80292e-5	2.09513e-5	0.00162998	5.04211e-4
chr12	53309156	53309218	13338806	0	-	0.564516	(0.53,0.59]	chr12	1049043	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000550033.5:ENST00000672900.1:ENST00000546393.7:ENST00000546572.1:ENST00000547761.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	3.21941	4.040865	4.86232	0.00266171	4.57805e-4	0.0240332	0.00608573
chr6	32163132	32163223	7118531	0	+	0.538462	(0.53,0.59]	chr6	546945	3	UTR3	UTR3:EXON_MRNA:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.21941	4.040865	4.86232	0.00266171	4.57805e-4	0.0240332	0.00608573
chr7	101210531	101210602	8953672	0	-	0.56338	(0.53,0.59]	chr7	684674	1	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000460132.5:ENST00000440925.1:ENST00000466881.1:ENST00000421736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.21941	4.040865	4.86232	0.00266171	4.57805e-4	0.0240332	0.00608573
chr7	151075605	151075690	8617533	0	+	0.564706	(0.53,0.59]	chr7	658385	1	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.21941	4.040865	4.86232	0.00266171	4.57805e-4	0.0240332	0.00608573
chrX	49565494	49565557	18695022	0	+	0.587302	(0.53,0.59]	chrX	1594979	1	CDS	CDS:EXON_MRNA	GAGE12F	ENSG00000236362.8	ENST00000639028.1:ENST00000440137.1	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.21941	4.040865	4.86232	0.00266171	4.57805e-4	0.0240332	0.00608573
chr7	103545196	103545270	8963716	0	-	0.459459	(0.455,0.49]	chr7	686176	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1:ENST00000681199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	4.0204	4.040615000000001	4.06083	0.00736097	3.56832e-5	0.0490627	7.81595e-4
chr1	171683969	171684063	1368505	0	-	0.478723	(0.455,0.49]	chr1	139450	10	EXON_PSEUDO	EXON_PSEUDO	RPL4P3	ENSG00000230364.1	ENST00000428881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr11	134240753	134240851	12222223	0	+	0.489796	(0.455,0.49]	chr11	942582	2	INTRON	INTRON	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000527586.1:ENST00000530402.1:ENST00000525918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr15	40326415	40326515	14880907	0	+	0.49	(0.455,0.49]	chr15	1168387	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	INAFM2	ENSG00000259330.3	ENST00000638170.2:ENST00000560415.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr16	4875057	4875151	15503525	0	+	0.478723	(0.455,0.49]	chr16	1229481	10	CDS	CDS:EXON_MRNA	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr16	81615106	81615206	15771102	0	+	0.47	(0.455,0.49]	chr16	1255471	33	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr19	51824422	51824518	17381133	0	+	0.458333	(0.455,0.49]	chr19	1445624	7	CDS	CDS:EXON_MRNA	FPR3	ENSG00000187474.5	ENST00000339223.5:ENST00000595991.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr2	173366282	173366357	2218743	0	+	0.48	(0.455,0.49]	chr2	202922	1	CDS	CDS:EXON_MRNA:INTRON	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000410101.7:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr22	38726005	38726077	18367518	0	+	0.486111	(0.455,0.49]	chr22	1562672	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000460605.1:ENST00000475959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr7	156498516	156498616	9143998	0	-	0.48	(0.455,0.49]	chr7	699107	165	INTRON	INTRON	LINC01006	ENSG00000182648.13	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000656505.1:ENST00000447933.6:ENST00000660473.1:ENST00000671433.1:ENST00000425712.1:ENST00000656837.1:ENST00000663891.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chrY	5337837	5337931	19342300	0	-	0.468085	(0.455,0.49]	chrY	1645390	2	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P2	ENSG00000235001.3	ENST00000422633.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.71798	4.040525	4.36307	0.0202679	0.00218641	0.0984041	0.0208941
chr14	23128018	23128107	14529525	0	-	0.505618	(0.49,0.53]	chr14	1138646	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	3.40126	4.04049	4.67972	6.94757e-4	1.73901e-5	0.00876781	4.37068e-4
chr1	236483244	236483343	769251	0	+	0.494949	(0.49,0.53]	chr1	77526	7	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	7	130	2	3.61361	4.040295	4.46698	7.79052e-7	2.85894e-9	3.58657e-5	2.62069e-7
chr21	33552613	33552712	18101183	0	+	0.494949	(0.49,0.53]	chr21	1534527	20	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	128	2	3.67983	4.04012	4.40041	4.72644e-7	4.74658e-9	2.10391e-5	4.42746e-7
chr17	44035217	44035316	16556063	0	-	0.535354	(0.53,0.59]	chr17	1358855	10	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	4.03453	4.039905	4.04528	4.6e-5	4.28524e-5	9.98851e-4	9.56296e-4
chr13	97393823	97393922	13858031	0	+	0.353535	(0.33,0.36]	chr13	1086522	25	UTR3	UTR3:EXON_MRNA	MBNL2	ENSG00000139793.19	ENST00000397601.5:ENST00000343600.8:ENST00000376673.7:ENST00000679496.1:ENST00000345429.10	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.4399	4.03981	4.63972	1.29517e-4	6.04873e-7	0.00242147	2.60562e-5
chrX	47657781	47657863	19061139	0	-	0.47561	(0.455,0.49]	chrX	1620039	1	CDS	CDS:EXON_MRNA	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000485641.5:ENST00000376964.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.12994	4.03968	5.94942	0.0304832	4.68666e-7	0.130204	2.08717e-5
chr1	109310064	109310163	1219430	0	-	0.414141	(0.39,0.42]	chr1	118935	6	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.784	4.03951	5.29502	0.00261393	1.68146e-5	0.0230705	4.64895e-4
chr1	36309690	36309790	141789	0	+	0.48	(0.455,0.49]	chr1	17651	1	SS5_PROX	SS5_PROX:INTRON	SH3D21	ENSG00000214193.11	ENST00000453908.8:ENST00000505871.7:ENST00000480549.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr1	150577474	150577491	1288953	0	-	0.470588	(0.455,0.49]	chr1	128251	1	CDS	CDS:EXON_MRNA	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr1	160266732	160266831	1328436	0	-	0.484848	(0.455,0.49]	chr1	135908	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-574F21.3:RPSAP18	ENSG00000258465.8:ENSG00000224261.2	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000453374.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr1	202965886	202965939	1453409	0	-	0.471698	(0.455,0.49]	chr1	146121	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYB5R1	ENSG00000159348.13	ENST00000367249.9:ENST00000482572.5:ENST00000446185.1:ENST00000473599.5:ENST00000478009.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr10	73154255	73154351	11569445	0	-	0.46875	(0.455,0.49]	chr10	880596	1	CDS	CDS:EXON_MRNA:INTRON	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6:ENST00000453402.5:ENST00000413026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr10	104313720	104313818	11678437	0	-	0.459184	(0.455,0.49]	chr10	891071	42	UTR3	UTR3:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr14	94726681	94726780	14470715	0	+	0.474747	(0.455,0.49]	chr14	1130296	5	EXON_PSEUDO	EXON_PSEUDO	RPSAP4	ENSG00000239269.1	ENST00000488229.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr15	43530722	43530822	14896044	0	+	0.49	(0.455,0.49]	chr15	1171123	6	UTR3	UTR3:EXON_MRNA	MAP1A	ENSG00000166963.13	ENST00000382031.5:ENST00000300231.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr16	53481670	53481752	15668363	0	+	0.487805	(0.455,0.49]	chr16	1245460	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RBL2	ENSG00000103479.17	ENST00000680543.1:ENST00000262133.11:ENST00000379935.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr16	58537135	58537220	15966400	0	-	0.458824	(0.455,0.49]	chr16	1281108	3	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr18	12329642	12329734	16762320	0	+	0.467391	(0.455,0.49]	chr18	1382545	6	UTR3	UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000591909.5:ENST00000590967.5:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr2	15415632	15415719	2528634	0	-	0.471264	(0.455,0.49]	chr2	227444	2	CDS	CDS:EXON_MRNA:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr2	20297615	20297678	2541131	0	-	0.460317	(0.455,0.49]	chr2	228566	2	CDS	CDS:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr2	50589142	50589233	2651425	0	-	0.483516	(0.455,0.49]	chr2	237731	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	NRXN1:MTCO1P42	ENSG00000179915.24:ENSG00000230327.1	ENST00000401669.7:ENST00000406316.6:ENST00000625672.2:ENST00000404971.5:ENST00000405472.7:ENST00000630543.2:ENST00000636298.1:ENST00000331040.9:ENST00000495871.2:ENST00000637605.1:ENST00000457379.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr2	86111112	86111158	1926413	0	+	0.478261	(0.455,0.49]	chr2	181408	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTCD3	ENSG00000132300.19	ENST00000465560.5:ENST00000409326.6:ENST00000409783.6:ENST00000418628.5:ENST00000488801.5:ENST00000254630.12:ENST00000483925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr22	42212106	42212206	18521686	0	-	0.46	(0.455,0.49]	chr22	1581714	20	CDS	CDS:EXON_MRNA	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000335626.8:ENST00000675876.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr3	187042972	187043056	3959726	0	+	0.47619	(0.455,0.49]	chr3	334001	3	CDS	CDS:EXON_MRNA:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000423451.5:ENST00000446170.1:ENST00000448449.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr3	198039063	198039162	3993832	0	+	0.484848	(0.455,0.49]	chr3	336723	5	UTR3	UTR3:EXON_MRNA	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000451139.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr4	110059654	110059707	5595151	0	-	0.471698	(0.455,0.49]	chr4	446481	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000507451.1:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr4	135046354	135046453	5119837	0	+	0.464646	(0.455,0.49]	chr4	414782	10	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr5	96803826	96803926	6721399	0	-	0.47	(0.455,0.49]	chr5	517486	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5:ENST00000508227.5:ENST00000507154.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr7	117219083	117219176	8480918	0	+	0.462366	(0.455,0.49]	chr7	647732	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000465641.5:ENST00000543837.5:ENST00000464020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr8	22138101	22138184	9750672	0	-	0.457831	(0.455,0.49]	chr8	737158	2	UTR3	UTR3:EXON_MRNA	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chrX	48346426	48346513	19062477	0	-	0.471264	(0.455,0.49]	chrX	1620270	1	UTR3	UTR3:EXON_MRNA	SSX3	ENSG00000165584.16	ENST00000298396.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chrX	77968040	77968133	19129659	0	-	0.462366	(0.455,0.49]	chrX	1626916	2	UTR3	UTR3:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81275	4.03934	4.26593	0.0138827	0.00372962	0.0760883	0.0302984
chr2	9587413	9587509	2508189	0	-	0.427083	(0.42,0.455]	chr2	226356	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.51988	4.039295	5.55871	0.00300574	2.52732e-10	0.0267032	3.08557e-8
chr2	159764125	159764225	2163197	0	+	0.3	(0.29,0.33]	chr2	199215	1	SS3_PROX	SS3_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.62312	4.03923	4.45534	0.0222826	0.00110984	0.104593	0.0127344
chr17	59764983	59765057	16296217	0	+	0.378378	(0.36,0.39]	chr17	1321818	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.76778	4.038975000000001	5.31017	0.00365703	2.05606e-9	0.0307238	1.98319e-7
chr14	67380711	67380765	14360529	0	+	0.407407	(0.39,0.42]	chr14	1122450	2	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.19588	4.03894	4.882	0.00321212	9.72017e-8	0.0280721	5.44683e-6
chr6	43513068	43513134	7707999	0	-	0.515152	(0.49,0.53]	chr6	591422	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6:ENST00000512713.5:ENST00000455768.6:ENST00000416380.6:ENST00000372417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	2.83191	4.03885	5.24579	1.99461e-4	4.073e-5	0.00316009	9.64741e-4
chr2	117826268	117826325	2021825	0	+	0.508772	(0.49,0.53]	chr2	191104	1	CDS	CDS:EXON_MRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000415038.1:ENST00000476149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.33324	4.03881	4.74438	0.00162947	5.91752e-4	0.0169972	0.00743488
chr4	102802560	102802638	5563984	0	-	0.410256	(0.39,0.42]	chr4	444369	1	CDS	CDS:UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000510599.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	98	2	3.95076	4.0387699999999995	4.12678	7.24702e-7	4.32022e-8	3.39777e-5	2.71087e-6
chr4	82827544	82827632	5496509	0	-	0.511364	(0.49,0.53]	chr4	440177	3	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000514362.5:ENST00000515749.1:ENST00000509691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	226	2	4.01542	4.038685	4.06195	3.5239e-9	3.16352e-10	3.41712e-7	3.78497e-8
chr22	36480737	36480837	18499368	0	-	0.6	(0.59,1]	chr22	1578347	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TXN2	ENSG00000100348.10	ENST00000216185.7:ENST00000416967.1:ENST00000487725.1:ENST00000403313.5:ENST00000411915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	3.36223	4.038665	4.7151	0.00412279	0.00203572	0.0325842	0.0192213
chr17	16431783	16431850	16141995	0	+	0.537313	(0.53,0.59]	chr17	1300720	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.20874	4.038485	4.86823	0.00278422	4.35895e-4	0.0241009	0.00623608
chr19	54206350	54206426	17390447	0	+	0.539474	(0.53,0.59]	chr19	1447212	2	CDS	CDS:EXON_MRNA:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	269	2	3.55264	4.038455	4.52427	7.55429e-8	1.80417e-11	4.87454e-6	2.95513e-9
chr7	92123119	92123217	8922199	0	-	0.367347	(0.36,0.39]	chr7	680649	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	70	2	3.6517	4.038365	4.42503	0.00133228	1.51512e-7	0.0144372	8.00663e-6
chr2	157258375	157258472	2152107	0	+	0.546392	(0.53,0.59]	chr2	198573	3	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.54844	4.03805	5.52766	0.00663226	1.38993e-5	0.0461575	3.94563e-4
chrX	30218580	30218680	18640657	0	+	0.59	(0.53,0.59]	chrX	1590508	1	CDS_START	CDS_START:CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.30943	4.0378799999999995	4.76633	0.0018255	6.98999e-4	0.0183913	0.00846751
chr16	68275149	68275249	15715598	0	+	0.57	(0.53,0.59]	chr16	1251137	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566834.5:ENST00000566454.5:ENST00000563080.1:ENST00000566579.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.1234	4.037865	4.95233	0.00390623	3.02711e-4	0.0322851	0.00439897
chr18	9536431	9536530	16753985	0	+	0.555556	(0.53,0.59]	chr18	1381612	6	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	7	137	2	3.35466	4.03778	4.7209	2.15119e-6	6.47717e-9	8.40005e-5	5.30089e-7
chr12	19456992	19457086	13233337	0	-	0.478723	(0.455,0.49]	chr12	1037586	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P4	ENSG00000245205.3	ENST00000359165.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	3.20348	4.03767	4.87186	3.27782e-4	2.33781e-4	0.0046686	0.00385436
chr14	101927406	101927503	14494908	0	+	0.329897	(0.29,0.33]	chr14	1132932	23	UTR3	UTR3:EXON_MRNA	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	3.33658	4.037615	4.73865	1.69227e-4	3.78205e-7	0.00275464	1.9544e-5
chr16	81710780	81710878	15772097	0	+	0.642857	(0.59,1]	chr16	1255597	11	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.84944	4.037465	5.22549	0.0128238	5.13843e-4	0.0719798	0.00665221
chr20	49188283	49188367	18000157	0	-	0.72619	(0.59,1]	chr20	1525659	3	UTR5	UTR5:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	3.17616	4.037365	4.89857	0.00434232	0.00182139	0.0339139	0.0176016
chr19	40447988	40448046	17566484	0	-	0.62069	(0.59,1]	chr19	1476386	1	CDS	CDS:UTR3:EXON_MRNA	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	145	2	3.91833	4.03734	4.15635	5.93256e-5	1.56008e-6	0.00130151	5.81346e-5
chr1	168246832	168246932	526537	0	+	0.27	[0,0.29]	chr1	56538	44	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.78212	4.0372900000000005	4.29246	0.00254021	3.32518e-4	0.0227257	0.00506816
chr14	52640309	52640407	14630033	0	-	0.469388	(0.455,0.49]	chr14	1145962	5	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.65079	4.03714	4.42349	3.61776e-4	3.27827e-6	0.00544764	1.08637e-4
chr4	77048576	77048662	5479176	0	-	0.511628	(0.49,0.53]	chr4	439256	4	CDS	CDS:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	3.23548	4.036905	4.83833	2.76544e-4	1.63658e-9	0.00444204	1.62532e-7
chr9	130885298	130885393	10494284	0	+	0.631579	(0.59,1]	chr9	792934	15	CDS	CDS:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.93698	4.036885	5.13679	0.0015925	9.28022e-4	0.0159023	0.0111748
chr1	67258752	67258844	264123	0	+	0.347826	(0.33,0.36]	chr1	29505	4	CDS	CDS:UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.88494	4.03637	5.1878	6.89291e-4	5.76385e-9	0.00876781	4.84322e-7
chr12	122146553	122146652	13123197	0	+	0.474747	(0.455,0.49]	chr12	1024850	49	UTR3	UTR3:EXON_MRNA	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.20069	4.036275	4.87186	0.00285821	2.33781e-4	0.0245841	0.00385436
chr20	2659524	2659585	17879599	0	-	0.47541	(0.455,0.49]	chr20	1512920	1	CDS	CDS:UTR3:EXON_MRNA	IDH3B	ENSG00000101365.21	ENST00000380851.9:ENST00000380843.9:ENST00000474315.5:ENST00000488299.5:ENST00000492240.5:ENST00000466494.6:ENST00000477689.2:ENST00000613370.1:ENST00000466999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.20069	4.036275	4.87186	0.00285821	2.33781e-4	0.0245841	0.00385436
chr7	73297145	73297244	8331809	0	+	0.666667	(0.59,1]	chr7	634444	5	EXON_PSEUDO	EXON_PSEUDO	POM121B	ENSG00000205578.6	ENST00000380760.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	42	2	3.06258	4.036015	5.00945	0.00616167	0.00149725	0.0438642	0.0159607
chr20	34089829	34089905	17945938	0	-	0.473684	(0.455,0.49]	chr20	1519884	1	CDS	CDS:EXON_MRNA	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	3.73634	4.035995	4.33565	5.69287e-6	7.61529e-8	1.88744e-4	4.41628e-6
chr17	41525190	41525273	16542270	0	-	0.518072	(0.49,0.53]	chr17	1355982	1	CDS	CDS:UTR5:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000593096.1:ENST00000479031.1:ENST00000455635.1:ENST00000462611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.95291	4.035795	5.11868	0.00119735	9.66505e-5	0.0134293	0.00175267
chr6	139372752	139372847	7995330	0	-	0.368421	(0.36,0.39]	chr6	611348	11	UTR3	UTR3:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	3.99	4.035775	4.08155	6.1616e-5	9.85897e-7	0.00133408	3.94225e-5
chr12	104348352	104348421	13059137	0	+	0.536232	(0.53,0.59]	chr12	1017715	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1:ENST00000525265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.29875	4.0354849999999995	4.77222	0.00191422	6.67251e-4	0.018324	0.00867533
chr17	42309376	42309430	16228121	0	+	0.574074	(0.53,0.59]	chr17	1312851	1	CDS	CDS:EXON_MRNA:INTRON	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000468096.5:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.29875	4.0354849999999995	4.77222	0.00191422	6.67251e-4	0.018324	0.00867533
chr5	140535361	140535449	6255190	0	+	0.534091	(0.53,0.59]	chr5	487640	1	CDS	CDS:EXON_MRNA:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000475148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.29875	4.0354849999999995	4.77222	0.00191422	6.67251e-4	0.018324	0.00867533
chr12	7812795	7812890	13192335	0	-	0.431579	(0.42,0.455]	chr12	1033373	4	UTR3	UTR3:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.84538	4.03531	4.22524	1.2691e-4	1.2079e-5	0.00219756	3.52389e-4
chr17	47668185	47668260	16251820	0	+	0.56	(0.53,0.59]	chr17	1316692	1	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	96	2	2.9976	4.035015	5.07243	7.21865e-5	2.94063e-8	0.00152286	1.96201e-6
chr12	68741896	68741980	12940306	0	+	0.464286	(0.455,0.49]	chr12	1008516	2	CDS	CDS:UTR3:EXON_MRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.96464	4.034995	4.10535	0.0064531	6.27408e-5	0.0450905	0.00135074
chr1	204411492	204411573	1457493	0	-	0.641975	(0.59,1]	chr1	146829	2	UTR5	UTR5:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.99438	4.034455	5.07453	0.00776449	0.00117617	0.050813	0.0132131
chrX	153794687	153794754	18916172	0	+	0.701493	(0.59,1]	chrX	1611446	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000491833.5:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471724.5:ENST00000471880.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	137	2	3.24044	4.034455	4.82847	1.05664e-4	1.01132e-6	0.00204601	4.03099e-5
chr3	196236330	196236428	4663874	0	-	0.438776	(0.42,0.455]	chr3	385717	21	UTR3	UTR3:EXON_MRNA:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.31161	4.034445	4.75728	0.00186138	5.3817e-4	0.018635	0.00686676
chr6	53348906	53348997	7740987	0	-	0.615385	(0.59,1]	chr6	594412	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	357	2	3.65137	4.034425000000001	4.41748	1.21769e-6	3.43557e-9	5.20765e-5	3.08443e-7
chr7	29915300	29915398	8200172	0	+	0.357143	(0.33,0.36]	chr7	625501	9	UTR3	UTR3:EXON_MRNA	WIPF3	ENSG00000122574.11	ENST00000242140.9	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.72365	4.034245	4.34484	3.19155e-4	5.33265e-6	0.00491578	1.63127e-4
chr7	5527982	5528082	8659478	0	-	0.56	(0.53,0.59]	chr7	662113	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	556	2	3.38105	4.03407	4.68709	4.96374e-9	1e-12	4.58554e-7	2.25522e-10
chr2	24334680	24334765	1679397	0	+	0.411765	(0.39,0.42]	chr2	164280	3	EXON_PSEUDO	EXON_PSEUDO	RPL36AP13	ENSG00000233747.1	ENST00000457490.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	82	2	3.6983	4.033985	4.36967	2.16638e-6	9.76301e-8	8.44845e-5	5.46732e-6
chr22	32039733	32039814	18352417	0	+	0.407407	(0.39,0.42]	chr22	1560185	4	EXON_PSEUDO	EXON_PSEUDO	SC22CB-1E7.1	ENSG00000232346.1	ENST00000423610.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	44	2	3.66467	4.03393	4.40319	3.60066e-4	3.72195e-6	0.00544157	1.21063e-4
chr6	143503997	143504082	8005328	0	-	0.423529	(0.42,0.455]	chr6	611763	2	CDS	CDS:EXON_MRNA:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	3.20518	4.033635	4.86209	6.88593e-5	1.22097e-7	0.00146004	6.6496e-6
chr1	180178849	180178884	582724	0	+	0.514286	(0.49,0.53]	chr1	60538	1	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.94177	4.033335	4.1249	0.0104929	2.4461e-5	0.063428	5.72214e-4
chr11	245545	245639	11756064	0	+	0.489362	(0.455,0.49]	chr11	897586	4	INTRON	INTRON	PSMD13	ENSG00000185627.18	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.69053	4.03331	5.37609	0.0182983	2.05373e-5	0.0925808	4.97369e-4
chr12	57232210	57232292	12902124	0	+	0.512195	(0.49,0.53]	chr12	1005198	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000554310.5:ENST00000554656.5:ENST00000557427.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000554975.5:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000553949.1:ENST00000553868.1:ENST00000555213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	3.51981	4.033245	4.54668	6.88328e-4	1.40979e-6	0.00876781	5.33111e-5
chr1	38017667	38017718	143008	0	+	0.411765	(0.39,0.42]	chr1	17916	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.29451	4.0327850000000005	4.77106	3.03764e-4	1.98354e-4	0.00472028	0.00314412
chr8	103435625	103435707	9527301	0	+	0.414634	(0.39,0.42]	chr8	724372	1	CDS	CDS:EXON_MRNA	DCAF13	ENSG00000164934.14	ENST00000297579.9:ENST00000616836.4:ENST00000521999.5:ENST00000612750.5:ENST00000518554.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	3.29451	4.0327850000000005	4.77106	3.03764e-4	1.98354e-4	0.00472028	0.00314412
chr11	61795932	61796026	11971306	0	+	0.56383	(0.53,0.59]	chr11	917378	6	CDS	CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000574708.5:ENST00000535307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.87264	4.03276	5.19288	0.00168899	9.22873e-5	0.0175515	0.0016906
chr1	149850441	149850540	1287008	0	-	0.707071	(0.59,1]	chr1	127837	61	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	H2BC20P	ENSG00000261716.2	ENST00000564237.2:ENST00000498492.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	69	2	2.0452	4.03275	6.0203	0.0179494	1.68221e-5	0.0939469	4.64895e-4
chr4	42086421	42086520	4810588	0	+	0.333333	(0.33,0.36]	chr4	397073	4	UTR3	UTR3:EXON_MRNA	SLC30A9	ENSG00000014824.14	ENST00000264451.12	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	3.93997	4.032655	4.12534	9.37165e-5	6.92433e-7	0.00186979	2.92467e-5
chr13	75537805	75537862	14080633	0	-	0.701754	(0.59,1]	chr13	1102436	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	COMMD6	ENSG00000188243.14	ENST00000682242.1:ENST00000377615.7:ENST00000460675.5:ENST00000377612.8:ENST00000355801.4:ENST00000497707.5:ENST00000486516.5:ENST00000464050.5:ENST00000477377.1:ENST00000471682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.66704	4.032555	4.39807	6.16458e-4	1.36238e-5	0.00822794	3.54656e-4
chr15	72218942	72218997	15368199	0	-	0.509091	(0.49,0.53]	chr15	1214173	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000564178.5:ENST00000562997.5:ENST00000567087.5:ENST00000564276.1:ENST00000566809.1:ENST00000569050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	83	2	3.28523	4.03254	4.77985	9.94306e-6	2.21147e-7	2.75183e-4	1.24171e-5
chr1	53800770	53800848	1025902	0	-	0.410256	(0.39,0.42]	chr1	106388	2	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.4261	4.032465	4.63883	0.00107164	5.68159e-4	0.0118238	0.0077844
chr12	100338527	100338617	13039808	0	+	0.411111	(0.39,0.42]	chr12	1015442	1	CDS	CDS:EXON_MRNA	SCYL2	ENSG00000136021.19	ENST00000360820.7:ENST00000635101.1:ENST00000547735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.4261	4.032465	4.63883	0.00107164	5.68159e-4	0.0118238	0.0077844
chr2	36849355	36849455	2594607	0	-	0.44	(0.42,0.455]	chr2	233508	118	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.57051	4.032395	5.49428	0.0265466	1.07978e-5	0.120071	2.9314e-4
chr2	39771940	39772040	2610373	0	-	0.26	[0,0.29]	chr2	235319	3	SS3_PROX	SS3_PROX:INTRON	THUMPD2	ENSG00000138050.15	ENST00000505747.6:ENST00000378727.8:ENST00000530522.1:ENST00000510781.2:ENST00000403537.3:ENST00000531687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.70252	4.0321750000000005	4.36183	0.00170062	2.87026e-4	0.01759	0.00422471
chr11	59578239	59578330	12400631	0	-	0.483516	(0.455,0.49]	chr11	959404	2	CDS	CDS:UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.30384	4.03216	4.76048	0.00184955	3.99985e-4	0.0178046	0.00588767
chr2	189563949	189564041	3082423	0	-	0.478261	(0.455,0.49]	chr2	272317	5	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.30384	4.03216	4.76048	0.00184955	3.99985e-4	0.0178046	0.00588767
chr3	185491693	185491751	4625819	0	-	0.465517	(0.455,0.49]	chr3	382041	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	3.30384	4.03216	4.76048	0.00184955	3.99985e-4	0.0178046	0.00588767
chr1	6233473	6233558	842670	0	-	0.411765	(0.39,0.42]	chr1	84951	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5:ENST00000474756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.73294	4.03212	4.3313	0.0190864	0.00209984	0.0958835	0.0204266
chr15	97972265	97972363	15138046	0	+	0.408163	(0.39,0.42]	chr15	1190510	12	UTR3	UTR3:EXON_MRNA	ARRDC4	ENSG00000140450.9	ENST00000268042.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73294	4.03212	4.3313	0.0190864	0.00209984	0.0958835	0.0204266
chr2	237578909	237579004	3239068	0	-	0.410526	(0.39,0.42]	chr2	285366	9	EXON_MRNA	EXON_MRNA:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.73294	4.03212	4.3313	0.0190864	0.00209984	0.0958835	0.0204266
chr4	16020633	16020733	5328257	0	-	0.4	(0.39,0.42]	chr4	428679	17	INTRON	INTRON	PROM1	ENSG00000007062.12	ENST00000505450.5:ENST00000447510.7:ENST00000508167.5:ENST00000510224.5:ENST00000513946.2:ENST00000539194.6:ENST00000540805.6:ENST00000675613.1:ENST00000675377.1:ENST00000511153.5:ENST00000502943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.73294	4.03212	4.3313	0.0190864	0.00209984	0.0958835	0.0204266
chr7	158262744	158262844	9155234	0	-	0.42	(0.39,0.42]	chr7	699468	571	INTRON	INTRON	PTPRN2	ENSG00000155093.19	ENST00000389418.9:ENST00000409483.5:ENST00000389413.7:ENST00000389416.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73294	4.03212	4.3313	0.0190864	0.00209984	0.0958835	0.0204266
chr17	46721971	46722069	16569015	0	-	0.5	(0.49,0.53]	chr17	1360930	5	EXON_PSEUDO	EXON_PSEUDO	RPS7P11	ENSG00000213326.4	ENST00000484240.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	37	2	3.27328	4.03207	4.79086	4.20783e-4	2.21441e-4	0.00611538	0.00341572
chr3	179592643	179592739	4606117	0	-	0.40625	(0.39,0.42]	chr3	380238	1	CDS	CDS:EXON_MRNA	MRPL47	ENSG00000136522.14	ENST00000476781.6:ENST00000259038.6:ENST00000392659.2	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	3.93653	4.031905	4.12728	2.99324e-7	5.74168e-8	1.60515e-5	3.4609e-6
chrX	120257311	120257410	18844032	0	+	0.363636	(0.36,0.39]	chrX	1605768	20	UTR3	UTR3:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.46497	4.031835	4.5987	0.00105709	9.0208e-4	0.0123035	0.0102618
chr21	14374094	14374189	18163695	0	-	0.378947	(0.36,0.39]	chr21	1542399	5	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	3.2928	4.03164	4.77048	2.65442e-4	2.24861e-7	0.004287	1.11991e-5
chr19	16132515	16132610	17247587	0	+	0.526316	(0.49,0.53]	chr19	1423028	3	UTR3	UTR3:EXON_MRNA	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.11892	4.031275	4.94363	0.00398244	2.3417e-4	0.0322851	0.00355764
chr14	22875539	22875631	14175058	0	+	0.576087	(0.53,0.59]	chr14	1110443	3	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000553002.1:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.37399	4.0310500000000005	5.68811	0.0126178	5.40688e-6	0.0717599	1.64762e-4
chr2	241352339	241352438	2467896	0	+	0.464646	(0.455,0.49]	chr2	223257	5	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000451310.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.89975	4.03095	5.16215	3.94125e-4	5.04348e-5	0.00541075	0.00113788
chr2	107706416	107706516	2831233	0	-	0.23	[0,0.29]	chr2	252399	27	INTRON	INTRON	LINC01885:RP11-534J18.1	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	2	25	2	2.99144	4.030945	5.07045	0.00112713	5.08054e-5	0.0122637	0.00114377
chr1	153663214	153663276	1298414	0	-	0.516129	(0.49,0.53]	chr1	130384	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.59881	4.030775	5.46274	0.00184545	1.13094e-5	0.0178046	3.3464e-4
chr1	228082659	228082754	743866	0	+	0.715789	(0.59,1]	chr1	75061	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.50474	4.030775	5.55681	0.0032572	1.60495e-4	0.02728	0.00286914
chr19	10683635	10683712	17226223	0	+	0.675325	(0.59,1]	chr19	1418896	1	CDS	CDS:EXON_MRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000593061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.5215	4.030595	5.53969	0.032241	1.29608e-4	0.135671	0.00223885
chr12	123261543	123261639	13594892	0	-	0.364583	(0.36,0.39]	chr12	1070943	7	UTR3	UTR3:EXON_MRNA	CDK2AP1	ENSG00000111328.7	ENST00000652466.1:ENST00000618072.4:ENST00000261692.7:ENST00000535979.5:ENST00000538446.5:ENST00000542174.5:ENST00000544658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.85784	4.030575	5.20331	0.00191736	2.53222e-5	0.0183299	6.51851e-4
chr15	88906701	88906778	15434363	0	-	0.61039	(0.59,1]	chr15	1220411	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000542878.5:ENST00000558029.5:ENST00000559259.1:ENST00000559997.5:ENST00000558352.5:ENST00000559770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	3.53648	4.030415	4.52435	0.00107706	6.54525e-6	0.0124943	1.94116e-4
chr4	170081857	170081957	5795394	0	-	0.38	(0.36,0.39]	chr4	456248	29	INTRON	INTRON	AADAT	ENSG00000109576.14	ENST00000515480.5:ENST00000509167.5:ENST00000337664.9:ENST00000353187.6:ENST00000505906.1:ENST00000510340.5:ENST00000507375.5:ENST00000502392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.89918	4.030305	4.16143	0.00486719	1.0624e-4	0.0366328	0.00205241
chr1	45015088	45015171	174355	0	+	0.39759	(0.39,0.42]	chr1	22555	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr11	14474494	14474554	12281727	0	-	0.4	(0.39,0.42]	chr11	949613	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000526191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr11	86306327	86306411	12046380	0	+	0.416667	(0.39,0.42]	chr11	928988	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HIKESHI	ENSG00000149196.16	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000532270.5:ENST00000530208.1:ENST00000618164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr12	42375020	42375074	12839445	0	+	0.407407	(0.39,0.42]	chr12	997403	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PPHLN1	ENSG00000134283.18	ENST00000549190.5:ENST00000337898.10:ENST00000395580.7:ENST00000610488.4:ENST00000619544.4:ENST00000613154.4:ENST00000551723.5:ENST00000395568.6:ENST00000256678.12:ENST00000358314.12:ENST00000449194.6:ENST00000552761.5:ENST00000551406.5:ENST00000317560.13:ENST00000432191.6:ENST00000552202.5:ENST00000546750.5:ENST00000547847.1:ENST00000552794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr14	22996468	22996568	14528514	0	-	0.41	(0.39,0.42]	chr14	1138326	2	SS3_PROX	SS3_PROX:INTRON	C14orf93	ENSG00000100802.15	ENST00000299088.11:ENST00000341470.8:ENST00000397379.7:ENST00000397382.8:ENST00000397377.5:ENST00000397376.6:ENST00000397380.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr15	41710878	41710972	14888360	0	+	0.404255	(0.39,0.42]	chr15	1169694	3	CDS	CDS:EXON_MRNA	MGA	ENSG00000174197.17	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr15	43809754	43809834	15250176	0	-	0.4125	(0.39,0.42]	chr15	1202277	1	CDS	CDS:EXON_MRNA	MFAP1	ENSG00000140259.7	ENST00000267812.4:ENST00000484386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr15	55853441	55853540	15297664	0	-	0.393939	(0.39,0.42]	chr15	1207550	5	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr16	74306195	74306288	15739435	0	+	0.397849	(0.39,0.42]	chr16	1254008	6	UTR3	UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr20	56459422	56459518	17835024	0	+	0.40625	(0.39,0.42]	chr20	1507951	8	UTR3	UTR3:EXON_MRNA	CASS4	ENSG00000087589.17	ENST00000679887.1:ENST00000434344.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr7	6689591	6689687	8665589	0	-	0.416667	(0.39,0.42]	chr7	662985	13	UTR3	UTR3:EXON_MRNA	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.93996	4.030279999999999	4.1206	0.00841622	0.00597537	0.054565	0.0428562
chr11	66346489	66346584	12424251	0	-	0.631579	(0.59,1]	chr11	964607	1	CDS	CDS:EXON_MRNA	B4GAT1	ENSG00000174684.7	ENST00000311181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.71566	4.030265	4.34487	0.0487443	0.0123678	0.175495	0.0705839
chr16	4874963	4875057	15503524	0	+	0.648936	(0.59,1]	chr16	1229481	9	CDS	CDS:EXON_MRNA	UBN1	ENSG00000118900.15	ENST00000262376.11:ENST00000590769.5:ENST00000396658.8:ENST00000586716.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.71566	4.030265	4.34487	0.0487443	0.0123678	0.175495	0.0705839
chr19	48796577	48796647	17603676	0	-	0.614286	(0.59,1]	chr19	1483218	1	CDS	CDS:EXON_MRNA	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5:ENST00000599246.5:ENST00000599510.1:ENST00000598162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	21	2	3.71566	4.030265	4.34487	0.0487443	0.0123678	0.175495	0.0705839
chr19	49594696	49594787	17371396	0	+	0.648352	(0.59,1]	chr19	1443325	1	CDS	CDS:EXON_MRNA	PRR12	ENSG00000126464.14	ENST00000418929.7	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.71566	4.030265	4.34487	0.0487443	0.0123678	0.175495	0.0705839
chr2	27243518	27243603	1691799	0	+	0.6	(0.59,1]	chr2	165815	1	UTR3	UTR3:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	21	2	3.71566	4.030265	4.34487	0.0487443	0.0123678	0.175495	0.0705839
chr5	149364035	149364122	6290545	0	+	0.678161	(0.59,1]	chr5	490730	1	CDS	CDS:UTR3:EXON_MRNA	PCYOX1L	ENSG00000145882.11	ENST00000510990.6:ENST00000274569.9:ENST00000511945.5:ENST00000505669.5:ENST00000503240.5:ENST00000514349.1:ENST00000507621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	21	2	3.71566	4.030265	4.34487	0.0487443	0.0123678	0.175495	0.0705839
chr1	226367479	226367543	1533082	0	-	0.421875	(0.42,0.455]	chr1	153435	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.03532	4.0300650000000005	6.0248100000000004	0.040947	2.97136e-7	0.163285	1.42027e-5
chr5	138435794	138435889	6244659	0	+	0.515789	(0.49,0.53]	chr5	486607	2	UTR3	UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	3.09336	4.030055	4.96675	1.28432e-4	5.35448e-8	0.00241206	3.27447e-6
chr2	216501404	216501503	2381804	0	+	0.343434	(0.33,0.36]	chr2	214028	1	UTR3	UTR3:EXON_MRNA:INTRON	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1:ENST00000491306.6:ENST00000487233.1:ENST00000600880.5:ENST00000446558.5:ENST00000420712.1:ENST00000359681.3:ENST00000598925.5:ENST00000427280.6:ENST00000456586.5:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.57153	4.03004	5.48855	0.00330025	3.24934e-10	0.028478	3.88099e-8
chr21	43093201	43093249	18271549	0	-	0.5625	(0.53,0.59]	chr21	1549528	1	CDS	CDS:UTR3:EXON_MRNA	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000478282.1:ENST00000471250.5:ENST00000486519.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.86102	4.029925	5.19883	0.0017805	8.7034e-5	0.0172974	0.00177086
chr6	2948297	2948397	7570802	0	-	0.58	(0.53,0.59]	chr6	577708	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.86102	4.029925	5.19883	0.0017805	8.7034e-5	0.0172974	0.00177086
chr2	75658547	75658646	1894594	0	+	0.313131	(0.29,0.33]	chr2	179770	34	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.13212	4.02992	4.92772	0.00551048	1.56621e-4	0.0414592	0.00259991
chr7	151477332	151477415	9131112	0	-	0.301205	(0.29,0.33]	chr7	698112	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.13212	4.02992	4.92772	0.00551048	1.56621e-4	0.0414592	0.00259991
chr15	66781083	66781171	14986193	0	+	0.636364	(0.59,1]	chr15	1178084	2	CDS	CDS:UTR3:EXON_MRNA	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.19	4.029885	4.86977	0.0039188	0.00246014	0.0314356	0.0230058
chr8	144316454	144316553	10148321	0	-	0.686869	(0.59,1]	chr8	763446	20	UTR3	UTR3:EXON_MRNA	DGAT1	ENSG00000185000.12	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.19	4.029885	4.86977	0.0039188	0.00246014	0.0314356	0.0230058
chr17	80136003	80136067	16704238	0	-	0.46875	(0.455,0.49]	chr17	1376645	1	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000570625.5:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.9967	4.0297600000000005	5.06282	0.00650423	1.16789e-4	0.0454205	0.0020505
chr20	55074841	55074941	17831411	0	+	0.48	(0.455,0.49]	chr20	1507730	3	EXON_PSEUDO	EXON_PSEUDO	RPL12P4	ENSG00000185834.10	ENST00000432629.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	2.9967	4.0297600000000005	5.06282	0.00650423	1.16789e-4	0.0454205	0.0020505
chr7	100627576	100627661	8952231	0	-	0.588235	(0.53,0.59]	chr7	684164	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000461176.1:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	127	2	3.97578	4.029725	4.08367	1.14839e-6	4.64854e-8	4.9396e-5	2.89038e-6
chr12	120438378	120438449	13116048	0	+	0.591549	(0.59,1]	chr12	1023747	1	CDS	CDS:EXON_MRNA	COX6A1:AL021546.6	ENSG00000111775.3:ENSG00000111780.8	ENST00000550009.1:ENST00000229379.3:ENST00000551806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	155	2	3.20997	4.029535	4.8491	3.84488e-5	1.1327e-6	8.33226e-4	4.90979e-5
chr3	133588359	133588454	3750851	0	+	0.4	(0.39,0.42]	chr3	321181	1	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.9641	4.029145	4.09419	6.346e-5	2.95839e-5	0.00124725	7.34143e-4
chr17	35725443	35725540	16207517	0	+	0.412371	(0.39,0.42]	chr17	1309154	19	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	3.71793	4.02907	4.34021	1.58821e-5	1.25102e-7	4.4403e-4	6.77099e-6
chr11	71443956	71444054	12444498	0	-	0.602041	(0.59,1]	chr11	967005	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000683874.1:ENST00000526780.5:ENST00000525346.5:ENST00000531364.5:ENST00000529990.5:ENST00000527452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	228	2	3.50469	4.0290099999999995	4.55333	2.42296e-5	1.82157e-8	6.27127e-4	1.30603e-6
chr1	235143735	235143834	1560404	0	-	0.30303	(0.29,0.33]	chr1	156074	52	INTRON	INTRON	RBM34:ARID4B	ENSG00000188739.15:ENSG00000054267.22	ENST00000408888.8:ENST00000474953.5:ENST00000447801.5:ENST00000474086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.10761	4.02883	4.95005	6.03128e-4	9.78718e-5	0.00754033	0.0019344
chr7	72942431	72942530	8330199	0	+	0.575758	(0.53,0.59]	chr7	634054	7	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.39416	4.02882	4.66348	0.00126006	0.00107799	0.013837	0.0118238
chr16	84745390	84745484	15790686	0	+	0.585106	(0.53,0.59]	chr16	1256672	8	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.02054	4.028795	5.03705	0.00577011	0.00020199200000000001	0.0426551	0.00317801
chr20	45909515	45909593	17987751	0	-	0.576923	(0.53,0.59]	chr20	1524223	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.02054	4.028795	5.03705	0.00577011	0.00020199200000000001	0.0426551	0.00317801
chr16	30724369	30724467	15631069	0	+	0.591837	(0.59,1]	chr16	1240525	9	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.29886	4.02825	5.75764	0.00759671	4.53637e-5	0.0505607	9.4617e-4
chr1	23082219	23082292	97778	0	+	0.561644	(0.53,0.59]	chr1	11304	1	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.28422	4.02822	4.77222	6.67251e-4	2.10061e-4	0.00867533	0.00327655
chr7	127844323	127844373	8516871	0	+	0.56	(0.53,0.59]	chr7	649724	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.28422	4.02822	4.77222	6.67251e-4	2.10061e-4	0.00867533	0.00327655
chr1	11974899	11974990	45507	0	+	0.538462	(0.53,0.59]	chr1	5813	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	137	2	3.64799	4.028214999999999	4.40844	2.06855e-7	9.04528e-8	1.04683e-5	5.73214e-6
chr1	202005802	202005888	662123	0	+	0.465116	(0.455,0.49]	chr1	66476	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNPEP	ENSG00000176393.11	ENST00000295640.9:ENST00000367286.7:ENST00000471105.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	3.50048	4.02762	4.55476	5.99835e-5	1.27404e-6	0.00130886	4.90986e-5
chr8	124486130	124486224	9593368	0	+	0.351064	(0.33,0.36]	chr8	727739	1	CDS	CDS:EXON_MRNA	RNF139	ENSG00000170881.5	ENST00000303545.4:ENST00000517684.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.36959	4.027595	4.6856	0.0014168	3.92435e-4	0.0145694	0.00583618
chr4	9097923	9098023	5304405	0	-	0.63	(0.59,1]	chr4	427337	332	INTRON	INTRON	RP11-1396O13.23	ENSG00000288075.1	ENST00000666840.1:ENST00000659603.1	lncRNA	lncRNA	lncRNA	lncRNA	4	181	2	3.08707	4.027585	4.9681	8.79989e-4	8.50346e-9	0.0107294	6.72875e-7
chr11	65078911	65079008	12421419	0	-	0.587629	(0.53,0.59]	chr11	963673	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDCA5	ENSG00000146670.10	ENST00000529290.5:ENST00000525464.1:ENST00000533015.5:ENST00000275517.8:ENST00000524733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.62204	4.0274149999999995	4.43279	0.0026472	4.3021e-4	0.0231864	0.00620274
chr20	3934062	3934162	17883265	0	-	0.59	(0.53,0.59]	chr20	1513718	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.62204	4.0274149999999995	4.43279	0.0026472	4.3021e-4	0.0231864	0.00620274
chr6	32154694	32154777	7118435	0	+	0.566265	(0.53,0.59]	chr6	546912	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	3.62204	4.0274149999999995	4.43279	0.0026472	4.3021e-4	0.0231864	0.00620274
chr11	763845	763944	11758795	0	+	0.636364	(0.59,1]	chr11	898434	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TALDO1	ENSG00000177156.11	ENST00000528097.5:ENST00000530440.1:ENST00000319006.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	182	2	3.93509	4.0272250000000005	4.11936	2.95054e-6	1.74896e-6	9.93235e-5	7.08104e-5
chr1	67219651	67219730	263727	0	+	0.417722	(0.39,0.42]	chr1	29479	2	CDS	CDS:UTR5:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	3.68984	4.027125	4.36441	4.74002e-6	4.15802e-7	1.63674e-4	1.88962e-5
chr8	124999403	124999503	9595355	0	+	0.48	(0.455,0.49]	chr8	727886	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	3.58827	4.027125	4.46598	9.42518e-7	2.65925e-9	4.20925e-5	2.4747e-7
chr2	26284116	26284204	1686364	0	+	0.363636	(0.36,0.39]	chr2	164868	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.02397	4.027085	5.0302	0.00674398	1.15931e-4	0.0461258	0.00204552
chr1	150968453	150968512	1291403	0	-	0.559322	(0.53,0.59]	chr1	128700	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000368949.8:ENST00000361419.9:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	3.74542	4.026590000000001	4.30776	0.00407289	2.30148e-4	0.0324137	0.00352524
chr6	31641860	31641945	7661400	0	-	0.505882	(0.49,0.53]	chr6	584820	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2:ENST00000470875.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	3.62647	4.02655	4.42663	2.59929e-5	6.48162e-8	6.68294e-4	3.85234e-6
chr6	73618345	73618429	7237719	0	+	0.440476	(0.42,0.455]	chr6	558253	1	EXON_PSEUDO	EXON_PSEUDO	RPS27P15	ENSG00000218459.1	ENST00000402023.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	3.37329	4.02655	4.67981	0.00136107	5.38444e-4	0.0141115	0.00744072
chr6	149742389	149742479	8019044	0	-	0.433333	(0.42,0.455]	chr6	612744	1	CDS	CDS:EXON_MRNA:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6:ENST00000543637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.37329	4.02655	4.67981	0.00136107	5.38444e-4	0.0141115	0.00744072
chr4	73090762	73090858	5466118	0	-	0.4375	(0.42,0.455]	chr4	437754	2	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	3.25872	4.02645	4.79418	4.85053e-5	2.10099e-7	0.00110436	1.05955e-5
chr19	36150041	36150110	17308843	0	+	0.594203	(0.59,1]	chr19	1432256	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000588815.5:ENST00000629983.2:ENST00000590049.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	4	136	2	3.28438	4.02643	4.76848	8.33662e-5	1.47805e-6	0.00171506	5.56634e-5
chr7	139422433	139422526	8566308	0	+	0.408602	(0.39,0.42]	chr7	653683	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.88836	4.025915	5.16347	0.0102432	6.48089e-5	0.062872	0.00126536
chr8	111027386	111027467	10012250	0	-	0.37037	(0.36,0.39]	chr8	754628	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1:ENST00000668936.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	3.33241	4.025835	4.71926	0.00193631	5.29682e-4	0.0192272	0.006804
chr11	62616602	62616699	12409621	0	-	0.57732000000000006	(0.53,0.59]	chr11	961201	2	CDS	CDS:UTR3:EXON_MRNA	B3GAT3	ENSG00000149541.10	ENST00000265471.10:ENST00000531383.5:ENST00000532585.5:ENST00000534026.5:ENST00000533303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr11	119335773	119335864	12163905	0	+	0.571429	(0.53,0.59]	chr11	938092	7	CDS	CDS:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr14	74902424	74902518	14402434	0	+	0.553191	(0.53,0.59]	chr14	1125613	2	UTR3	UTR3:EXON_MRNA	DLST	ENSG00000119689.15	ENST00000554612.5:ENST00000334220.9:ENST00000238671.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr2	96275111	96275155	2790250	0	-	0.568182	(0.53,0.59]	chr2	248679	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr2	128013091	128013154	2870288	0	-	0.555556	(0.53,0.59]	chr2	256654	2	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10:ENST00000424298.5	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr5	882252	882350	6421815	0	-	0.530612	(0.53,0.59]	chr5	500312	12	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr5	150698564	150698631	6914677	0	-	0.552239	(0.53,0.59]	chr5	529257	2	CDS	CDS:EXON_MRNA:INTRON	RBM22	ENSG00000086589.12	ENST00000199814.9:ENST00000447771.6:ENST00000522469.5:ENST00000518917.5:ENST00000521248.5:ENST00000521594.1:ENST00000521464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.61294	4.025785	4.43863	0.0310038	0.00254763	0.130016	0.0233955
chr1	46279181	46279257	981821	0	-	0.539474	(0.53,0.59]	chr1	103503	1	CDS	CDS:UTR3:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000496156.5:ENST00000617190.5:ENST00000343304.10:ENST00000617760.4:ENST00000615587.4:ENST00000472710.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr1	183973615	183973682	1405563	0	-	0.537313	(0.53,0.59]	chr1	142209	1	CDS	CDS:EXON_MRNA	COLGALT2	ENSG00000198756.12	ENST00000649786.1:ENST00000361927.9	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr12	57533237	57533303	13356877	0	-	0.530303	(0.53,0.59]	chr12	1052783	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5:ENST00000550750.2:ENST00000551611.6:ENST00000550086.5:ENST00000550954.5:ENST00000551872.1:ENST00000548736.1:ENST00000546670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr15	73573661	73573728	15371919	0	-	0.567164	(0.53,0.59]	chr15	1214699	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr15	90644082	90644179	15101990	0	+	0.56701	(0.53,0.59]	chr15	1188336	21	UTR3	UTR3:EXON_MRNA	CRTC3	ENSG00000140577.16	ENST00000268184.11:ENST00000420329.6	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr16	46967579	46967646	15928844	0	-	0.552239	(0.53,0.59]	chr16	1277650	2	CDS	CDS:UTR3:EXON_MRNA	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1:ENST00000617000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr2	63684385	63684466	1850149	0	+	0.54321	(0.53,0.59]	chr2	175445	2	EXON_PSEUDO	EXON_PSEUDO	RPL27P6	ENSG00000234488.1	ENST00000411843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr20	2146566	2146666	17649443	0	+	0.55	(0.53,0.59]	chr20	1491865	29	UTR3	UTR3:EXON_MRNA:INTRON	STK35	ENSG00000125834.13	ENST00000381482.8:ENST00000493263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr21	42890904	42891002	18133735	0	+	0.561224	(0.53,0.59]	chr21	1537996	36	INTRON	INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr22	38732195	38732294	18367590	0	+	0.545455	(0.53,0.59]	chr22	1562698	16	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr3	44421322	44421420	4146869	0	-	0.55102	(0.53,0.59]	chr3	346552	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	C3orf86	ENSG00000225873.4	ENST00000636468.1:ENST00000416124.2:ENST00000634610.1:ENST00000637612.1:ENST00000647047.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr6	160063414	160063486	7528519	0	+	0.555556	(0.53,0.59]	chr6	574848	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr8	89243498	89243596	9931420	0	-	0.55102	(0.53,0.59]	chr8	749907	2	EXON_PSEUDO	EXON_PSEUDO	RPSAP74	ENSG00000253621.1	ENST00000522047.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr9	33442910	33442970	10632559	0	-	0.566667	(0.53,0.59]	chr9	803594	2	CDS	CDS:UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2:ENST00000645858.1:ENST00000463983.5:ENST00000473153.1:ENST00000643650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.61856	4.025675	4.43279	0.0303021	0.0026472	0.129773	0.0231864
chr11	66003625	66003672	11987298	0	+	0.446809	(0.42,0.455]	chr11	921243	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BANF1	ENSG00000175334.8	ENST00000445560.6:ENST00000524663.1:ENST00000524628.1:ENST00000312175.7:ENST00000533166.5:ENST00000527348.1:ENST00000528648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.19078	4.02558	4.86038	0.00310864	3.34791e-4	0.0274272	0.00472923
chr13	95071661	95071757	14109881	0	-	0.427083	(0.42,0.455]	chr13	1104336	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000474158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.19078	4.02558	4.86038	0.00310864	3.34791e-4	0.0274272	0.00472923
chr17	36309596	36309692	16210741	0	+	0.447917	(0.42,0.455]	chr17	1309474	19	INTRON	INTRON	CH17-260O16.1	ENSG00000261499.2	ENST00000569955.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	25	2	3.19078	4.02558	4.86038	0.00310864	3.34791e-4	0.0274272	0.00472923
chr17	44035118	44035217	16556062	0	-	0.424242	(0.42,0.455]	chr17	1358855	9	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.19078	4.02558	4.86038	0.00310864	3.34791e-4	0.0274272	0.00472923
chr1	235128776	235128837	1560269	0	-	0.688525	(0.59,1]	chr1	156046	2	UTR5	UTR5:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	17	591	2	3.78455	4.02529	4.26603	1.26513e-7	5.05417e-10	7.70413e-6	5.73434e-8
chr12	110460987	110461080	13085963	0	+	0.483871	(0.455,0.49]	chr12	1020559	1	EXON_PSEUDO	EXON_PSEUDO	RPL31P49	ENSG00000241680.1	ENST00000490759.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	55	2	3.12843	4.0252300000000005	4.92203	0.00392855	7.22227e-8	0.0322851	4.22134e-6
chr1	21833870	21833925	890734	0	-	0.6	(0.59,1]	chr1	92272	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	114	2	3.43241	4.02519	4.61797	1.69745e-4	3.73949e-6	0.00299149	1.21565e-4
chr21	14963521	14963620	18167896	0	-	0.373737	(0.36,0.39]	chr21	1542659	24	UTR3	UTR3:EXON_MRNA:INTRON	AF127936.9:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	23	2	3.06292	4.025175	4.98743	0.00499846	8.82225e-5	0.0370021	0.00178337
chr12	24849785	24849867	13256061	0	-	0.536585	(0.53,0.59]	chr12	1038880	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	31	2	3.61133	4.02498	4.43863	0.00254763	4.55298e-4	0.0233955	0.00608573
chr17	7497436	7497517	16105112	0	+	0.567901	(0.53,0.59]	chr17	1296708	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	3.61133	4.02498	4.43863	0.00254763	4.55298e-4	0.0233955	0.00608573
chr2	27204460	27204525	2569404	0	-	0.553846	(0.53,0.59]	chr2	231208	1	CDS	CDS:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000492069.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.61133	4.02498	4.43863	0.00254763	4.55298e-4	0.0233955	0.00608573
chr6	44140251	44140305	7160878	0	+	0.555556	(0.53,0.59]	chr6	553553	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000532634.5:ENST00000534326.5:ENST00000525294.5:ENST00000371893.6:ENST00000497371.6:ENST00000525873.5:ENST00000527188.1:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.61133	4.02498	4.43863	0.00254763	4.55298e-4	0.0233955	0.00608573
chr1	160997781	160997880	1331416	0	-	0.474747	(0.455,0.49]	chr1	136426	27	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	9	149	2	4.01112	4.024625	4.03813	1.76084e-8	6.00915e-9	1.37698e-6	5.00473e-7
chr1	11964237	11964300	45388	0	+	0.603175	(0.59,1]	chr1	5771	2	CDS	CDS:EXON_MRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.62482	4.02452	4.42422	7.40647e-4	1.17291e-5	0.00925967	3.12994e-4
chr1	45015358	45015398	174359	0	+	0.5	(0.49,0.53]	chr1	22557	1	CDS	CDS:UTR3:EXON_MRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	3.51981	4.02431	4.52881	6.88328e-4	2.69531e-8	0.00876781	1.81955e-6
chr5	168506776	168506831	6369246	0	+	0.472727	(0.455,0.49]	chr5	494735	2	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.30139	4.023975	5.74656	0.0530131	1.95355e-6	0.195536	7.00948e-5
chr9	120869785	120869865	10834286	0	-	0.65	(0.59,1]	chr9	820585	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.85123	4.023855	5.19648	0.0022846	7.35336e-4	0.0209856	0.00921643
chr12	120461671	120461757	13580768	0	-	0.360465	(0.36,0.39]	chr12	1069056	1	UTR3	UTR3:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000548326.1:ENST00000548792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.84089	4.023225	5.20556	0.0128123	4.46552e-5	0.0719798	9.34801e-4
chr3	161242580	161242653	3857842	0	+	0.383562	(0.36,0.39]	chr3	327638	2	CDS	CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.84089	4.023225	5.20556	0.0128123	4.46552e-5	0.0719798	9.34801e-4
chr8	73291551	73291606	9888177	0	-	0.381818	(0.36,0.39]	chr8	747614	1	CDS	CDS:EXON_MRNA	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000466821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	112	2	3.784	4.023075	4.26215	4.58893e-8	1.66957e-8	2.85892e-6	1.32044e-6
chr12	54465116	54465167	13344096	0	-	0.529412	(0.49,0.53]	chr12	1049906	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000548538.1:ENST00000546739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.15207	4.02306	4.89405	0.00347189	2.57983e-4	0.0286293	0.00419998
chr3	150545725	150545778	4517236	0	-	0.528302	(0.49,0.53]	chr3	374950	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1:ENST00000491660.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.15207	4.02306	4.89405	0.00347189	2.57983e-4	0.0286293	0.00419998
chr21	44849980	44850079	18277411	0	-	0.444444	(0.42,0.455]	chr21	1550248	5	UTR3	UTR3:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	3.88373	4.023045	4.16236	1.83138e-5	4.66503e-7	4.99708e-4	2.08206e-5
chr11	46780256	46780319	12383873	0	-	0.52381	(0.49,0.53]	chr11	956114	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.25514	4.023	4.79086	0.00227467	4.20783e-4	0.0209546	0.00611538
chr22	29273737	29273800	18336455	0	+	0.507937	(0.49,0.53]	chr22	1558158	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000485037.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000493426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.25514	4.023	4.79086	0.00227467	4.20783e-4	0.0209546	0.00611538
chr17	75265823	75265923	16354201	0	+	0.6	(0.59,1]	chr17	1327182	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPS7	ENSG00000125445.11	ENST00000245539.11:ENST00000579002.5:ENST00000583407.1:ENST00000581993.5:ENST00000584678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.68392	4.022975	5.36203	0.0202468	3.74697e-4	0.0984041	0.00560631
chr4	176331364	176331462	5242255	0	+	0.326531	(0.29,0.33]	chr4	421869	32	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.08169	4.02231	4.96293	0.00114594	4.06577e-8	0.0130468	2.58327e-6
chrM	6964	7060	19377207	0	+	0.4375	(0.42,0.455]	chrM	1649805	11	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	21	296	2	3.78022	4.02227	4.26432	1.49347e-10	5.42438e-11	1.93481e-8	8.66876e-9
chr10	69088102	69088157	11094002	0	+	0.472727	(0.455,0.49]	chr10	843389	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SRGN	ENSG00000122862.5	ENST00000242465.4:ENST00000462445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.06914	4.022195	4.97525	6.6649e-4	1.38474e-4	0.00820018	0.00254294
chr10	73251762	73251849	11570296	0	-	0.528736	(0.49,0.53]	chr10	880687	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3:ENST00000471251.5:ENST00000473427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	3.23781	4.022055	4.8063	5.17993e-5	1.96248e-7	0.00115752	9.99962e-6
chr14	20457056	20457122	14171282	0	+	0.575758	(0.53,0.59]	chr14	1109114	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1:ENST00000556054.5:ENST00000557592.5:ENST00000557365.1:ENST00000557150.5:ENST00000438886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	3.00674	4.021895	5.03705	8.9408e-4	0.00020199200000000001	0.01086	0.00317801
chr22	41507790	41507876	18380851	0	+	0.569767	(0.53,0.59]	chr22	1564550	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000482208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	3.00674	4.021895	5.03705	8.9408e-4	0.00020199200000000001	0.01086	0.00317801
chr3	52524650	52524731	4183365	0	-	0.580247	(0.53,0.59]	chr3	352877	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NT5DC2	ENSG00000168268.11	ENST00000463947.5:ENST00000307076.8:ENST00000422318.7:ENST00000479024.5:ENST00000462261.5:ENST00000492555.5:ENST00000459839.5:ENST00000469616.1:ENST00000466112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	3.00674	4.021895	5.03705	8.9408e-4	0.00020199200000000001	0.01086	0.00317801
chr17	82237326	82237420	16382687	0	+	0.744681	(0.59,1]	chr17	1332454	3	CDS	CDS:EXON_MRNA:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000578684.6:ENST00000577650.6:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000578810.1:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.6986	4.021735	4.34487	0.0123678	4.89626e-4	0.0705839	0.00639399
chr7	128986728	128986824	9060495	0	-	0.520833	(0.49,0.53]	chr7	691815	1	CDS	CDS:EXON_MRNA:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	3.25244	4.02165	4.79086	4.20783e-4	1.25784e-5	0.00611538	3.31924e-4
chr5	90516386	90516483	6692519	0	-	0.391753	(0.39,0.42]	chr5	515977	9	UTR3	UTR3:EXON_MRNA	LYSMD3	ENSG00000176018.13	ENST00000500869.6:ENST00000315948.11	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.5823	4.02147	5.46064	0.00246531	1.15573e-5	0.0230262	3.09736e-4
chr12	53314750	53314849	13338867	0	-	0.555556	(0.53,0.59]	chr12	1049055	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000672900.1:ENST00000546393.7:ENST00000547761.6:ENST00000549983.5:ENST00000549821.5:ENST00000548258.5:ENST00000551724.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	3.3733	4.02133	4.66936	0.0529193	0.00103174	0.18423900000000001	0.0121443
chr2	135868776	135868860	2898204	0	-	0.559524	(0.53,0.59]	chr2	258558	3	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.3733	4.02133	4.66936	0.0529193	0.00103174	0.18423900000000001	0.0121443
chr6	41907171	41907258	7701708	0	-	0.563218	(0.53,0.59]	chr6	590632	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-973N23.5:MED20	ENSG00000288721.1:ENSG00000124641.16	ENST00000684631.1:ENST00000682596.1:ENST00000683313.1:ENST00000265350.9:ENST00000467535.5:ENST00000482361.1:ENST00000409312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	3.3733	4.02133	4.66936	0.0529193	0.00103174	0.18423900000000001	0.0121443
chr6	170660127	170660227	7556986	0	+	0.56	(0.53,0.59]	chr6	576995	197	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	18	2	3.3733	4.02133	4.66936	0.0529193	0.00103174	0.18423900000000001	0.0121443
chr17	59694434	59694531	16295602	0	+	0.412371	(0.39,0.42]	chr17	1321774	7	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	151	2	3.94366	4.02113	4.0986	9.65509e-9	3.40758e-9	8.25497e-7	3.06245e-7
chr6	10725957	10726008	7048572	0	+	0.509804	(0.49,0.53]	chr6	539754	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5:ENST00000495549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.9516	4.021045	4.09049	6.96459e-5	2.9452e-5	0.0013446	7.32348e-4
chr12	2803639	2803735	12696875	0	+	0.5	(0.49,0.53]	chr12	984985	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FKBP4	ENSG00000004478.8	ENST00000001008.6:ENST00000544366.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	4.01171	4.021025	4.03034	4.88513e-5	4.26396e-5	0.00100497	9.97006e-4
chr14	30889691	30889791	14201302	0	+	0.38	(0.36,0.39]	chr14	1112920	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.02397	4.020765	5.01756	0.00674398	2.8655e-8	0.0461258	1.91701e-6
chr1	156136381	156136465	486140	0	+	0.583333	(0.53,0.59]	chr1	51290	3	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	136	2	2.75178	4.0206	5.28942	8.47358e-4	3.18527e-11	0.0104407	4.89122e-9
chr5	82009601	82009699	6672949	0	-	0.479592	(0.455,0.49]	chr5	515054	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP11	ENSG00000251495.1	ENST00000510729.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	2.96925	4.020485	5.07172	0.00698725	8.3067e-5	0.0473262	0.00171126
chr9	94459159	94459243	10367787	0	+	0.47619	(0.455,0.49]	chr9	780588	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.81275	4.020135	4.22752	0.0138827	1.24055e-5	0.0760883	3.28918e-4
chr15	60352378	60352476	15316745	0	-	0.55102	(0.53,0.59]	chr15	1208929	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	3.12943	4.019995	4.91056	4.81557e-4	1.08461e-7	0.00677016	5.98453e-6
chr11	47191180	47191270	12385592	0	-	0.455556	(0.455,0.49]	chr11	956560	1	EXON_PSEUDO	EXON_PSEUDO	RP11-390K5.1	ENSG00000243802.2	ENST00000473109.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	2.40664	4.01998	5.63332	0.0123662	4.15159e-6	0.0705839	1.32627e-4
chr9	35061632	35061689	10638116	0	-	0.473684	(0.455,0.49]	chr9	804518	2	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.40664	4.01998	5.63332	0.0123662	4.15159e-6	0.0705839	1.32627e-4
chr8	125008970	125009027	9595455	0	+	0.473684	(0.455,0.49]	chr8	727917	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	3.94061	4.019905	4.0992	2.73975e-5	2.93826e-6	6.95757e-4	9.91141e-5
chr4	121819440	121819509	5626294	0	-	0.376812	(0.36,0.39]	chr4	448545	2	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	3.80953	4.0199	4.23027	8.12035e-7	3.40433e-7	3.35153e-5	1.78572e-5
chr1	184073344	184073441	601721	0	+	0.309278	(0.29,0.33]	chr1	62323	6	UTR3	UTR3:EXON_MRNA:INTRON	TSEN15	ENSG00000198860.14	ENST00000423085.7:ENST00000361641.6:ENST00000643231.1:ENST00000533373.6:ENST00000647437.1:ENST00000647465.1:ENST00000643916.1:ENST00000645668.2:ENST00000644145.1:ENST00000644592.1:ENST00000646297.2:ENST00000645963.2:ENST00000644479.1:ENST00000462677.3:ENST00000643702.1:ENST00000644815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	3.23505	4.01973	4.80441	1.0759e-4	1.56681e-7	0.00207122	8.23739e-6
chr4	165342039	165342133	5206957	0	+	0.319149	(0.29,0.33]	chr4	420285	2	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.99453	4.019515	4.0445	8.03892e-5	1.10996e-7	0.00167226	6.11678e-6
chr17	1879214	1879310	16084348	0	+	0.40625	(0.39,0.42]	chr17	1293323	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000573924.1:ENST00000574049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.0503	4.019275	4.98825	0.00570576	1.62756e-4	0.0424438	0.00266622
chr12	100257687	100257738	13505432	0	-	0.411765	(0.39,0.42]	chr12	1061451	1	EXON_SMALL	EXON_SMALL:INTRON	DEPDC4:Y_RNA	ENSG00000166153.17:ENSG00000206790.1	ENST00000378244.6:ENST00000550587.6:ENST00000416321.5:ENST00000548313.5:ENST00000549249.5:ENST00000299185.12:ENST00000549341.1:ENST00000551642.1:ENST00000384063.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:nonsense_mediated_decay	8	120	2	3.78406	4.01926	4.25446	2.50054e-7	1.58704e-8	1.37736e-5	1.15256e-6
chr1	101025724	101025784	1200872	0	-	0.533333	(0.53,0.59]	chr1	117307	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPH5	ENSG00000117543.21	ENST00000370109.8:ENST00000370105.7:ENST00000488789.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5:ENST00000476507.1:ENST00000481982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	4.00393	4.01923	4.03453	0.0108084	4.6e-5	0.064368	9.56296e-4
chr6	52403601	52403697	7177646	0	+	0.510417	(0.49,0.53]	chr6	555098	4	CDS	CDS:EXON_MRNA:INTRON	EFHC1:PAQR8	ENSG00000096093.16:ENSG00000170915.9	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.7546	4.01896	4.28332	0.00338762	2.09468e-4	0.0288632	0.00327655
chr8	140526748	140526848	10132110	0	-	0.51	(0.49,0.53]	chr8	760954	67	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.7546	4.01896	4.28332	0.00338762	2.09468e-4	0.0288632	0.00327655
chr16	58184259	58184310	15965880	0	-	0.27451	[0,0.29]	chr16	1280971	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2:ENST00000562367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	3.0735	4.018905	4.96431	0.00785095	1.20737e-4	0.0520241	0.00210079
chr13	30428090	30428178	13668498	0	+	0.465909	(0.455,0.49]	chr13	1076918	1	CDS	CDS:EXON_MRNA	UBE2L5	ENSG00000236444.5	ENST00000638137.1:ENST00000635918.2:ENST00000436446.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.52734	4.018885	5.51043	0.00792433	9.08728e-6	0.0523592	2.53877e-4
chr1	11974708	11974808	45505	0	+	0.62	(0.59,1]	chr1	5812	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	140	2	3.79502	4.0188299999999995	4.24264	3.77126e-5	3.47072e-6	9.05627e-4	1.13687e-4
chr16	69697644	69697743	15725335	0	+	0.434343	(0.42,0.455]	chr16	1252140	14	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	133	2	3.88919	4.01841	4.14763	6.92374e-8	7.54482e-9	4.51791e-6	6.10165e-7
chr17	64003643	64003726	16636188	0	-	0.53012	(0.53,0.59]	chr17	1368042	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.515	4.01834	5.52168	0.0292633	1.48967e-5	0.129773	3.81697e-4
chr10	75220742	75220818	11126506	0	+	0.328947	(0.29,0.33]	chr10	846657	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	73	2	3.69467	4.018295	4.34192	2.08145e-6	1.16423e-8	7.38737e-5	9.65752e-7
chr16	61055775	61055869	15969146	0	-	0.468085	(0.455,0.49]	chr16	1281543	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPS27AP16	ENSG00000224631.4	ENST00000591758.1:ENST00000492222.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	7	119	2	3.96019	4.0182850000000006	4.07638	1.0208e-6	9.74848e-9	4.50492e-5	7.60356e-7
chr11	119046416	119046467	12626433	0	-	0.490196	(0.49,0.53]	chr11	979751	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	3.91386	4.018245	4.12263	0.00591451	3.70757e-7	0.0427941	1.71165e-5
chr18	59355580	59355658	17142604	0	-	0.397436	(0.39,0.42]	chr18	1407664	2	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	109	2	3.4128	4.01806	4.62332	1.8582e-5	5.51311e-10	5.04916e-4	6.19061e-8
chr2	219218124	219218213	3191254	0	-	0.617977	(0.59,1]	chr2	280845	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	3.09455	4.017925	4.9413	0.00191468	7.92671e-4	0.0190905	0.00933379
chr11	61790492	61790590	12405866	0	-	0.540816	(0.53,0.59]	chr11	960568	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM258	ENSG00000134825.16	ENST00000535042.1:ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1:ENST00000540434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	128	2	3.98962	4.017665	4.04571	2.29235e-6	2.53005e-8	8.86852e-5	1.72434e-6
chr17	62516677	62516767	16629953	0	-	0.444444	(0.42,0.455]	chr17	1367140	5	EXON_PSEUDO	EXON_PSEUDO	RP11-464D20.2	ENSG00000239246.3	ENST00000460492.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	73	2	3.97694	4.017245	4.05755	2.22686e-6	1.23973e-6	8.65681e-5	4.7999e-5
chr4	77035002	77035100	4900536	0	+	0.326531	(0.29,0.33]	chr4	403559	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	3.78648	4.017110000000001	4.24774	3.27747e-7	2.55017e-7	1.73222e-5	1.24895e-5
chr20	32836702	32836771	17755736	0	+	0.42029	(0.42,0.455]	chr20	1498937	2	CDS	CDS:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.50825	4.017095	4.52594	0.00144145	5.86898e-5	0.0147046	0.00129243
chr12	120210438	120210536	13579784	0	-	0.357143	(0.33,0.36]	chr12	1068824	1	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.78095	4.017015	5.25308	0.00388614	2.94355e-5	0.0322851	6.67979e-4
chr2	84431507	84431583	2768823	0	-	0.355263	(0.33,0.36]	chr2	245493	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000491123.5:ENST00000487809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.78095	4.017015	5.25308	0.00388614	2.94355e-5	0.0322851	6.67979e-4
chr3	48747384	48747484	4170008	0	-	0.5	(0.49,0.53]	chr3	350020	9	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.8681	4.016835	5.16557	0.00175299	6.36135e-5	0.0171299	0.00136069
chr21	34095885	34095982	18104975	0	+	0.42268	(0.42,0.455]	chr21	1534981	7	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	59	2	3.31073	4.016825	4.72292	1.94134e-4	3.66958e-7	0.00332542	1.6957e-5
chr6	30722967	30723028	7112206	0	+	0.442623	(0.42,0.455]	chr6	545061	1	CDS_START	CDS_START:CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	291	2	3.959	4.016655	4.07431	7.86733e-11	7.77067e-11	1.2074e-8	1.09096e-8
chr22	30978412	30978510	18344871	0	+	0.387755	(0.36,0.39]	chr22	1559168	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	3.3558500000000002	4.016500000000001	4.67715	2.39157e-5	4.639e-7	5.64568e-4	2.31256e-5
chr10	100526476	100526554	11663233	0	-	0.5	(0.49,0.53]	chr10	888945	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-411B6.6:NDUFB8	ENSG00000255339.6:ENSG00000166136.16	ENST00000529568.5:ENST00000527595.5:ENST00000557395.5:ENST00000528174.5:ENST00000533549.1:ENST00000299166.9:ENST00000464651.1:ENST00000370322.5:ENST00000370320.4:ENST00000528425.5:ENST00000466088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.51981	4.016465	4.51312	0.00156636	6.88328e-4	0.0156889	0.00876781
chr9	120869586	120869685	10834284	0	-	0.40404	(0.39,0.42]	chr9	820583	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.27012	4.01628	5.76244	0.00945558	1.61725e-6	0.0594007	5.98677e-5
chr1	171536111	171536194	537047	0	+	0.493976	(0.49,0.53]	chr1	57632	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.99849	4.01615	5.03381	0.00630123	1.49689e-4	0.0445415	0.0024973
chr19	45181600	45181700	17352134	0	+	0.5	(0.49,0.53]	chr19	1439673	18	UTR3	UTR3:EXON_MRNA:INTRON	MARK4:BLOC1S3	ENSG00000007047.15:ENSG00000189114.8	ENST00000587566.5:ENST00000433642.3:ENST00000593083.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.99849	4.01615	5.03381	0.00630123	1.49689e-4	0.0445415	0.0024973
chr9	122392273	122392358	10452771	0	+	0.505882	(0.49,0.53]	chr9	787092	2	CDS	CDS:UTR3:EXON_MRNA	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.99849	4.01615	5.03381	0.00630123	1.49689e-4	0.0445415	0.0024973
chrX	66208180	66208246	18717712	0	+	0.545455	(0.53,0.59]	chrX	1597034	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	114	2	3.70208	4.0159	4.32972	7.20871e-6	1.31271e-7	2.30406e-4	7.07089e-6
chr12	16989387	16989475	12756760	0	+	0.397727	(0.39,0.42]	chr12	991473	4	EXON_PSEUDO	EXON_PSEUDO	SKP1P2	ENSG00000256211.1	ENST00000444513.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	41	2	3.13927	4.015725	4.89218	1.6518e-4	9.67557e-5	0.0029267300000000002	0.00175376
chrX	53534101	53534197	19077157	0	-	0.510417	(0.49,0.53]	chrX	1622629	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000488459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.04107	4.015705	4.99034	0.00533879	1.6002e-4	0.0392268	0.00286408
chr1	212104124	212104223	701725	0	+	0.363636	(0.36,0.39]	chr1	71180	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	3.00115	4.015675	5.0302	0.0012486	1.15931e-4	0.0137762	0.00204552
chr8	42401917	42402015	9305623	0	+	0.479592	(0.455,0.49]	chr8	712500	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VDAC3	ENSG00000078668.14	ENST00000520115.5:ENST00000522069.5:ENST00000522572.5:ENST00000022615.9:ENST00000521348.5:ENST00000521158.5:ENST00000522010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	2.35793	4.0156600000000005	5.67339	8.03861e-4	2.05982e-6	0.00944667	8.10246e-5
chr11	134247488	134247588	12222296	0	+	0.51	(0.49,0.53]	chr11	942599	20	UTR3	UTR3:EXON_MRNA	VPS26B	ENSG00000151502.11	ENST00000281187.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.35133	4.015525	4.67972	0.00150139	6.94757e-4	0.0152367	0.00876781
chr1	171592923	171593021	537645	0	+	0.336735	(0.33,0.36]	chr1	57757	12	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.65992	4.015405	4.37089	3.45596e-4	5.4707e-6	0.00486237	1.82072e-4
chr7	65967818	65967907	8834445	0	-	0.516854	(0.49,0.53]	chr7	674572	2	CDS	CDS:UTR3:EXON_MRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000461622.1:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	3.83319	4.0154049999999994	4.19762	1.34601e-4	4.23721e-7	0.00249552	1.92035e-5
chr18	35333992	35334090	17076656	0	-	0.387755	(0.36,0.39]	chr18	1402842	19	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	3.51192	4.015335	4.51875	1.03824e-5	1.56348e-6	3.10912e-4	5.82084e-5
chr2	96186335	96186433	2789824	0	-	0.489796	(0.455,0.49]	chr2	248609	16	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	103	2	3.82741	4.01503	4.20265	7.2352e-7	2.68855e-8	3.02956e-5	1.98363e-6
chr9	131198015	131198115	10496367	0	+	0.52	(0.49,0.53]	chr9	793351	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	133	2	3.73644	4.014844999999999	4.29325	1.46923e-6	1.96716e-9	6.07568e-5	1.91065e-7
chr16	23587196	23587277	15895400	0	-	0.45679	(0.455,0.49]	chr16	1272297	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5:ENST00000567761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	3.24286	4.01449	4.78612	2.77105e-4	2.17075e-7	0.00444204	1.0861e-5
chrX	55181655	55181743	19085024	0	-	0.363636	(0.36,0.39]	chrX	1623832	4	UTR3	UTR3:EXON_MRNA	MTRNR2L10	ENSG00000256045.3	ENST00000545075.3	protein_coding	protein_coding	protein_coding	protein_coding	55	716	2	3.91568	4.0142299999999995	4.11278	1e-12	1e-12	2.46312e-10	2.25522e-10
chr2	70087939	70088036	1878480	0	+	0.536082	(0.53,0.59]	chr2	177396	2	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	10	168	2	3.01098	4.014145	5.01731	3.59383e-6	4.36414e-10	1.29307e-4	5.03828e-8
chr12	8943469	8943535	13197255	0	-	0.439394	(0.42,0.455]	chr12	1033928	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000536844.5:ENST00000543704.5:ENST00000537621.1:ENST00000543258.1:ENST00000543834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.87922	4.013135	4.14705	1.04705e-4	2.1071e-5	0.0020295	5.06044e-4
chr17	66493200	66493300	16323623	0	+	0.28	[0,0.29]	chr17	1324470	1290	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.91571	4.013005	4.1103	0.00493104	1.5798e-4	0.0366648	0.00285004
chr1	149885121	149885216	1287094	0	-	0.421053	(0.42,0.455]	chr1	127851	8	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	3.71365	4.01276	4.31187	2.63375e-4	1.65296e-7	0.00427022	8.63103e-6
chr16	21980546	21980591	15587003	0	+	0.444444	(0.42,0.455]	chr16	1235481	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000561798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	3.71365	4.01276	4.31187	2.63375e-4	1.65296e-7	0.00427022	8.63103e-6
chr6	32169081	32169178	7664650	0	-	0.536082	(0.53,0.59]	chr6	586094	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	3.17316	4.012735	4.85231	7.8686e-5	1.71119e-7	0.00164157	8.87341e-6
chr1	225922203	225922293	1531306	0	-	0.577778	(0.53,0.59]	chr1	153184	1	CDS	CDS:EXON_MRNA:PRIMIRNA	RP4-559A3.7:PYCR2:MIR6741	ENSG00000255835.1:ENSG00000143811.19:ENSG00000284519.1	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000446534.1:ENST00000618782.1:ENST00000489681.5:ENST00000472798.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	3	69	2	3.62271	4.0126100000000005	4.40251	2.78569e-5	4.48447e-6	7.05707e-4	1.41623e-4
chr9	110250819	110250879	10792360	0	-	0.416667	(0.39,0.42]	chr9	817303	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.91757	4.01259	5.10761	1.19356e-4	5.12039e-5	0.00208353	0.00114668
chr16	16068228	16068302	15567999	0	+	0.527027	(0.49,0.53]	chr16	1232739	2	CDS	CDS:EXON_MRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.99849	4.012365	5.02624	0.00630123	3.25781e-8	0.0445415	2.14209e-6
chr12	53409461	53409561	12886161	0	+	0.51	(0.49,0.53]	chr12	1002321	2	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.94403	4.01232	5.08061	0.00122634	1.00361e-4	0.0130695	0.00196575
chr19	38721612	38721688	17323669	0	+	0.671053	(0.59,1]	chr19	1434335	2	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.92097	4.012215	5.10346	0.0102634	8.40506e-4	0.0628742	0.00981548
chr6	143502424	143502494	8005311	0	-	0.4	(0.39,0.42]	chr6	611757	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.93737	4.012195	4.08702	7.80292e-5	3.01232e-5	0.00162998	6.78876e-4
chr17	59681742	59681839	16295458	0	+	0.412371	(0.39,0.42]	chr17	1321723	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	9	136	2	3.85364	4.012125	4.17061	5.05646e-7	3.13791e-9	2.49522e-5	2.84206e-7
chr1	46303697	46303766	178542	0	+	0.521739	(0.49,0.53]	chr1	23157	1	UTR5	UTR5:EXON_MRNA	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	487	2	3.64379	4.011699999999999	4.37961	7.92624e-10	1e-12	9.35354e-8	2.25522e-10
chr6	49612534	49612634	7729674	0	-	0.45	(0.42,0.455]	chr6	592957	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000646874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.50649	4.01162	5.51675	0.0302857	5.14372e-6	0.130016	1.73456e-4
chr17	59685140	59685226	16295504	0	+	0.44186	(0.42,0.455]	chr17	1321751	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472651.5:ENST00000475458.1	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.8096	4.011585	5.21357	0.00253237	6.18673e-9	0.0233955	5.12571e-7
chr17	5434872	5434966	16421531	0	-	0.478723	(0.455,0.49]	chr17	1338185	1	CDS	CDS:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	81	2	3.44026	4.011255	4.58225	8.71641e-5	1.58006e-8	0.00177086	1.14917e-6
chr20	44942520	44942618	17984305	0	-	0.602041	(0.59,1]	chr20	1523586	5	UTR3	UTR3:EXON_MRNA	TOMM34	ENSG00000025772.8	ENST00000372813.4	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	3.30708	4.011089999999999	4.7151	0.00412279	0.00252451	0.0325842	0.0226777
chr3	51995461	51995469	4181367	0	-	0.625	(0.59,1]	chr3	352471	1	CDS	CDS:UTR5:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5:ENST00000492277.5:ENST00000481629.1:ENST00000486565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	3.30708	4.011089999999999	4.7151	0.00412279	0.00252451	0.0325842	0.0226777
chr18	23672252	23672351	17038491	0	-	0.585859	(0.53,0.59]	chr18	1400725	1	EXON_PSEUDO	EXON_PSEUDO	RPS10P27	ENSG00000267752.1	ENST00000586795.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.46349	4.011045	4.5586	0.00161229	9.2216e-4	0.0169168	0.0104432
chr22	19962776	19962815	18296455	0	+	0.564103	(0.53,0.59]	chr22	1552990	1	CDS	CDS:EXON_MRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000678240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.46349	4.011045	4.5586	0.00161229	9.2216e-4	0.0169168	0.0104432
chr6	43058150	43058233	7706924	0	-	0.542169	(0.53,0.59]	chr6	591211	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RP1-20C7.7:MRPL2	ENSG00000288564.1:ENSG00000112651.12	ENST00000673761.1:ENST00000388752.8:ENST00000230413.9:ENST00000489623.1:ENST00000470667.5:ENST00000491898.5:ENST00000480286.1:ENST00000487429.1:ENST00000468957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	3.46349	4.011045	4.5586	0.00161229	9.2216e-4	0.0169168	0.0104432
chr2	96283908	96284004	2790356	0	-	0.541667	(0.53,0.59]	chr2	248730	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	69	2	3.56863	4.010985	4.45334	3.93456e-5	3.13332e-6	8.48445e-4	1.15746e-4
chr16	85654363	85654450	15797874	0	+	0.655172	(0.59,1]	chr16	1257023	2	CDS	CDS:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.11074	4.01088	5.91102	0.0305	2.06903e-5	0.130204	4.99825e-4
chr6	149749827	149749901	7481500	0	+	0.594595	(0.59,1]	chr6	571739	1	CDS	CDS:UTR5:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000494411.6:ENST00000460828.6:ENST00000464889.7:ENST00000486585.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	78	2	2.39073	4.01079	5.63085	0.0027229	8.43355e-5	0.0245443	0.0015859
chr12	53465931	53465973	12886595	0	+	0.47619	(0.455,0.49]	chr12	1002450	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	14	244	2	3.43663	4.01075	4.58487	1.4835e-7	1.45328e-12	8.83303e-6	3.13558e-10
chr1	155256732	155256791	1307285	0	-	0.59322	(0.59,1]	chr1	132098	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	3.05115	4.01065	4.97015	0.00140057	0.00103208	0.0144327	0.0121443
chr3	150741216	150741308	4518343	0	-	0.478261	(0.455,0.49]	chr3	375083	2	UTR3	UTR3:EXON_MRNA	SIAH2	ENSG00000181788.4	ENST00000312960.4	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	4.00069	4.0105450000000005	4.0204	0.00736097	5.13615e-5	0.0490627	0.00104999
chr17	60385984	60386084	16623280	0	-	0.31	(0.29,0.33]	chr17	1366273	400	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	3.20367	4.009925	4.81618	6.11481e-4	2.74489e-4	0.00818575	0.00406677
chr11	17087362	17087461	12295158	0	-	0.282828	[0,0.29]	chr11	950318	9	UTR3	UTR3:EXON_MRNA:INTRON	PIK3C2A	ENSG00000011405.13	ENST00000531428.1:ENST00000265970.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.6579	4.0098650000000005	4.36183	0.0197988	0.00170062	0.0983378	0.01759
chr2	26137356	26137454	1685724	0	+	0.244898	[0,0.29]	chr2	164739	25	UTR3	UTR3:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.6579	4.0098650000000005	4.36183	0.0197988	0.00170062	0.0983378	0.01759
chr12	68841047	68841147	12941199	0	+	0.49	(0.455,0.49]	chr12	1008678	13	UTR3	UTR3:EXON_MRNA	MDM2	ENSG00000135679.26	ENST00000258149.11	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.50904	4.009735	5.51043	0.0310515	9.08728e-6	0.131262	2.53877e-4
chr1	171787832	171787930	538115	0	+	0.520408	(0.49,0.53]	chr1	57818	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EEF1AKNMT	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000478330.1:ENST00000466643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.8967	4.009665	4.12263	0.0128791	0.00591451	0.0725185	0.0427941
chr2	27242884	27242973	1691789	0	+	0.52809	(0.49,0.53]	chr2	165805	4	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.8967	4.009665	4.12263	0.0128791	0.00591451	0.0725185	0.0427941
chr20	62853115	62853215	18030861	0	-	0.5	(0.49,0.53]	chr20	1529111	66	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.8967	4.009665	4.12263	0.0128791	0.00591451	0.0725185	0.0427941
chr3	49057048	49057141	4172014	0	-	0.494624	(0.49,0.53]	chr3	350280	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000479449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.8967	4.009665	4.12263	0.0128791	0.00591451	0.0725185	0.0427941
chr1	19385565	19385626	878245	0	-	0.508197	(0.49,0.53]	chr1	90696	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000457768.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr1	40738843	40738943	155245	0	+	0.5	(0.49,0.53]	chr1	19464	1	CDS_START	CDS_START:CDS:EXON_MRNA	NFYC	ENSG00000066136.20	ENST00000467203.5:ENST00000424419.6:ENST00000427410.6:ENST00000447388.7:ENST00000425457.6:ENST00000453631.5:ENST00000456393.6:ENST00000372654.5:ENST00000534399.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5:ENST00000531464.5:ENST00000440226.7:ENST00000525290.5:ENST00000416859.6:ENST00000530965.5:ENST00000308733.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr1	45634165	45634236	978769	0	-	0.507042	(0.49,0.53]	chr1	103200	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000479235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr1	91024705	91024804	350254	0	+	0.515152	(0.49,0.53]	chr1	34315	9	EXON_PSEUDO	EXON_PSEUDO	RPL5P6	ENSG00000232393.1	ENST00000425640.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr1	171796756	171796852	538210	0	+	0.520833	(0.49,0.53]	chr1	57845	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EEF1AKNMT	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000466643.1:ENST00000476386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr10	122994254	122994347	11725805	0	-	0.505376	(0.49,0.53]	chr10	894800	5	CDS	CDS:EXON_MRNA	IKZF5	ENSG00000095574.12	ENST00000368886.10:ENST00000617859.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr12	49992549	49992602	13327209	0	-	0.528302	(0.49,0.53]	chr12	1046328	1	CDS	CDS:EXON_MRNA	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr12	51058072	51058128	12876150	0	+	0.517857	(0.49,0.53]	chr12	1000591	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000550929.5:ENST00000547029.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr14	75654885	75654976	14709969	0	-	0.527473	(0.49,0.53]	chr14	1152600	1	CDS	CDS:EXON_MRNA	ERG28	ENSG00000133935.7	ENST00000256319.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr2	73847595	73847674	1889072	0	+	0.506329	(0.49,0.53]	chr2	178855	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000424659.6:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr3	50052949	50053047	3463830	0	+	0.5	(0.49,0.53]	chr3	302521	43	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1:ENST00000446471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr3	130376536	130376636	3734693	0	+	0.52	(0.49,0.53]	chr3	319639	4	CDS	CDS:EXON_MRNA	COL6A5	ENSG00000172752.14	ENST00000312481.11:ENST00000265379.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr6	16295367	16295458	7067851	0	+	0.505495	(0.49,0.53]	chr6	540929	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000544145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr7	66662780	66662879	8305677	0	+	0.525253	(0.49,0.53]	chr7	633183	78	INTRON	INTRON	RP11-792A8.5:RP4-756H11.3	ENSG00000284461.2:ENSG00000226824.7	ENST00000503687.2:ENST00000448096.1:ENST00000439360.5:ENST00000656515.1:ENST00000657342.1:ENST00000428557.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr8	58603209	58603297	9840568	0	-	0.5	(0.49,0.53]	chr8	744703	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSMAF	ENSG00000035681.9	ENST00000038176.8:ENST00000649465.1:ENST00000427130.6:ENST00000519858.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr9	33923794	33923862	10633444	0	-	0.529412	(0.49,0.53]	chr9	803803	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000474372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.94177	4.00948	4.07719	0.0104929	0.0074411	0.063428	0.0492519
chr5	41919158	41919257	5952048	0	+	0.343434	(0.33,0.36]	chr5	466512	5	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.7655	4.00929	5.25308	0.0175892	2.94355e-5	0.0918323	6.67979e-4
chr2	96185547	96185645	2789816	0	-	0.316327	(0.29,0.33]	chr2	248609	8	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	78	2	3.33755	4.0091	4.68065	2.21339e-6	7.90464e-9	7.80484e-5	6.94893e-7
chr11	57551742	57551830	12395040	0	-	0.454545	(0.42,0.455]	chr11	958833	2	UTR3	UTR3:EXON_MRNA	UBE2L6	ENSG00000156587.16	ENST00000340573.8:ENST00000287156.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.77666	4.008995	4.24133	0.00326918	1.85215e-4	0.0282494	0.00296795
chr11	57817387	57817485	11953250	0	+	0.44898	(0.42,0.455]	chr11	914890	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.77666	4.008995	4.24133	0.00326918	1.85215e-4	0.0282494	0.00296795
chr17	1658525	1658604	16401353	0	-	0.443038	(0.42,0.455]	chr17	1334864	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.77666	4.008995	4.24133	0.00326918	1.85215e-4	0.0282494	0.00296795
chr12	111576070	111576170	13541111	0	-	0.32	(0.29,0.33]	chr12	1065386	113	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.21455	4.008884999999999	4.80322	0.00283988	2.14303e-4	0.0245061	0.00359478
chr13	40863298	40863398	13987381	0	-	0.26	[0,0.29]	chr13	1097056	71	INTRON	INTRON	TPTE2P5	ENSG00000168852.13	ENST00000652519.1:ENST00000458118.5:ENST00000379515.3:ENST00000633547.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	18	2	3.28583	4.008755	4.73168	0.00346525	3.88478e-4	0.0293796	0.00534839
chr19	36219690	36219789	17308900	0	+	0.282828	[0,0.29]	chr19	1432268	11	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.28583	4.008755	4.73168	0.00346525	3.88478e-4	0.0293796	0.00534839
chr4	99086033	99086133	5548377	0	-	0.28	[0,0.29]	chr4	443197	4	SS3_PROX	SS3_PROX:INTRON	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512659.5:ENST00000508511.5:ENST00000502590.5:ENST00000505652.1:ENST00000508146.5:ENST00000507102.5:ENST00000502386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.28583	4.008755	4.73168	0.00346525	3.88478e-4	0.0293796	0.00534839
chr6	7882951	7883047	7587985	0	-	0.364583	(0.36,0.39]	chr6	578854	16	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.18642	4.00847	4.83052	0.00359152	3.15227e-4	0.0302391	0.00452711
chr15	84687624	84687699	15421038	0	-	0.36	(0.33,0.36]	chr15	1219633	1	CDS	CDS:EXON_MRNA:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	251	2	3.22011	4.008445	4.79678	3.73041e-7	1e-12	1.92867e-5	2.25522e-10
chr8	97851474	97851570	9507215	0	+	0.510417	(0.49,0.53]	chr8	722769	1	UTR3	UTR3:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	3.92528	4.007885	4.09049	2.9452e-5	3.34795e-6	7.32348e-4	1.10631e-4
chr19	11027810	11027880	17229306	0	+	0.442857	(0.42,0.455]	chr19	1419439	1	CDS	CDS:UTR3:EXON_MRNA	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646513.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5:ENST00000642508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.05889	4.007745	4.9566	0.00524205	2.10615e-4	0.0399155	0.00327655
chr3	96349949	96350048	3612087	0	+	0.434343	(0.42,0.455]	chr3	310547	5	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	38	2	2.96859	4.007695	5.0468	2.9375e-4	1.33918e-4	0.00465315	0.00229039
chr1	211575754	211575843	1478546	0	-	0.393258	(0.39,0.42]	chr1	149190	4	CDS	CDS:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.48908	4.00767	5.52626	0.0101318	7.67816e-6	0.0626311	2.20857e-4
chr1	96678966	96679059	1185018	0	-	0.419355	(0.39,0.42]	chr1	116525	2	EXON_PSEUDO	EXON_PSEUDO	RPL7P9	ENSG00000137970.7	ENST00000468715.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	42	2	3.76141	4.00758	4.25375	2.14058e-4	1.03195e-5	0.00359478	2.84226e-4
chr1	12322535	12322605	48284	0	+	0.385714	(0.36,0.39]	chr1	6320	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5:ENST00000487188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr1	19230963	19231063	877258	0	-	0.38	(0.36,0.39]	chr1	90458	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr1	86894788	86894888	1144833	0	-	0.37	(0.36,0.39]	chr1	113753	72	INTRON	INTRON	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr15	25016300	25016398	14824581	0	+	0.367347	(0.36,0.39]	chr15	1163233	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr18	9859618	9859716	16755642	0	+	0.387755	(0.36,0.39]	chr18	1381732	4	UTR3	UTR3:EXON_MRNA	RAB31	ENSG00000168461.13	ENST00000578921.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr4	114665679	114665756	5063562	0	+	0.38961	(0.36,0.39]	chr4	411403	1	CDS	CDS:EXON_MRNA	UGT8	ENSG00000174607.11	ENST00000310836.11:ENST00000394511.3	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr7	6692903	6693003	8665623	0	-	0.37	(0.36,0.39]	chr7	662989	2	SS3_PROX	SS3_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr9	99152396	99152496	10383935	0	+	0.39	(0.36,0.39]	chr9	782310	32	UTR3	UTR3:EXON_MRNA	TGFBR1	ENSG00000106799.13	ENST00000374990.6:ENST00000374994.9:ENST00000552516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.77302	4.007479999999999	4.24194	0.0162599	0.00276729	0.0866586	0.0247437
chr6	34744175	34744274	7125486	0	+	0.464646	(0.455,0.49]	chr6	548353	1	EXON_PSEUDO	EXON_PSEUDO	RP3-375P9.2	ENSG00000217130.1	ENST00000408001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	45	2	3.73589	4.007475	4.27906	2.30579e-4	8.82347e-6	0.00382267	2.48294e-4
chr12	122132291	122132383	13123034	0	+	0.543478	(0.53,0.59]	chr12	1024803	1	CDS	CDS:EXON_MRNA:INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000539861.5:ENST00000538061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	113	2	3.12235	4.007445000000001	4.89254	5.39156e-6	1.22494e-7	1.64762e-4	7.48996e-6
chr1	113112572	113112666	413547	0	+	0.5	(0.49,0.53]	chr1	40825	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.73494	4.007275	4.27961	0.0189345	9.03426e-6	0.0934721	2.53429e-4
chr1	21865716	21865809	891108	0	-	0.634409	(0.59,1]	chr1	92462	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000644714.1	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.44238	4.00715	4.57192	0.00158239	4.93335e-6	0.0167793	1.5336e-4
chr15	100941120	100941220	15150230	0	+	0.43	(0.42,0.455]	chr15	1191315	160	INTRON	INTRON	LRRK1	ENSG00000154237.13	ENST00000527698.1:ENST00000532029.6:ENST00000388948.8:ENST00000525284.5:ENST00000531270.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.81137	4.0070250000000005	5.20268	0.0120386	3.59669e-5	0.0700876	8.71318e-4
chr6	15521843	15521942	7066949	0	+	0.444444	(0.42,0.455]	chr6	540811	17	UTR3	UTR3:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.81137	4.0070250000000005	5.20268	0.0120386	3.59669e-5	0.0700876	8.71318e-4
chr19	50415437	50415519	17376140	0	+	0.634146	(0.59,1]	chr19	1444517	1	CDS	CDS:UTR3:EXON_MRNA	POLD1	ENSG00000062822.15	ENST00000600859.5:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593407.5:ENST00000593981.1:ENST00000596648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.5215	4.00667	5.49184	0.032241	1.61513e-4	0.135671	0.00265627
chr19	38840095	38840187	17561106	0	-	0.456522	(0.455,0.49]	chr19	1475078	1	CDS	CDS:UTR3:EXON_MRNA	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5:ENST00000601664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	115	2	3.38471	4.006584999999999	4.62846	2.00074e-5	5.50041e-10	5.35199e-4	6.17835e-8
chr1	32672449	32672526	130331	0	+	0.441558	(0.42,0.455]	chr1	16100	1	CDS	CDS:UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	108	2	3.4878	4.006489999999999	4.52518	6.57827e-7	2.23906e-8	2.80327e-5	1.68827e-6
chr6	85574262	85574362	7825383	0	-	0.36	(0.33,0.36]	chr6	599533	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1:ENST00000683727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.72365	4.006455	4.28926	3.19155e-4	7.83197e-6	0.00491578	2.24375e-4
chrX	87703437	87703533	19141898	0	-	0.552083	(0.53,0.59]	chrX	1627927	2	EXON_PSEUDO	EXON_PSEUDO	RPSAP15	ENSG00000237506.3	ENST00000448168.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	52	2	2.3186	4.006355	5.69411	0.00299541	5.01544e-6	0.0256157	1.7067e-4
chr15	77113855	77113955	15388657	0	-	0.37	(0.36,0.39]	chr15	1216690	133	UTR3	UTR3:EXON_MRNA	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.98025	4.006225	4.0322	0.00881716	0.00588589	0.0562439	0.0427941
chr7	133977716	133977816	8544664	0	+	0.38	(0.36,0.39]	chr7	651988	393	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000478265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.98025	4.006225	4.0322	0.00881716	0.00588589	0.0562439	0.0427941
chr14	54432163	54432220	14635545	0	-	0.45614	(0.455,0.49]	chr14	1146408	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	3.97859	4.00604	4.03349	4.13044e-5	2.2191e-6	9.71332e-4	7.82023e-5
chr19	14563981	14564067	17243453	0	+	0.5	(0.49,0.53]	chr19	1422046	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000593637.5:ENST00000594807.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000598715.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6:ENST00000600395.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	61	2	3.80825	4.006005	4.20376	1.43152e-5	7.68944e-6	4.04062e-4	2.20857e-4
chr17	42773732	42773823	16229724	0	+	0.615385	(0.59,1]	chr17	1313370	1	CDS	CDS:UTR5:EXON_MRNA	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000591584.1:ENST00000589219.1:ENST00000589577.1:ENST00000590339.5:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	3.53648	4.005825	4.47517	0.00735659	0.00107706	0.0491503	0.0124943
chr3	14468149	14468212	3320655	0	+	0.539683	(0.53,0.59]	chr3	292249	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	144	2	2.86162	4.00578	5.14994	7.12934e-5	1.19393e-10	0.00137329	1.75743e-8
chr19	12560405	12560498	17236705	0	+	0.494624	(0.49,0.53]	chr19	1420584	10	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.88887	4.00575	4.12263	0.00591451	9.98984e-5	0.0427941	0.00180257
chr5	96785879	96785971	6721200	0	-	0.434783	(0.42,0.455]	chr5	517418	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000514604.5:ENST00000507859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.46349	4.005705000000001	4.54792	9.66045e-4	9.0025e-4	0.0115185	0.0102618
chr2	131269054	131269153	2066976	0	+	0.424242	(0.42,0.455]	chr2	194205	39	INTRON	INTRON	PLEKHB2	ENSG00000115762.16	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	3.97694	4.005385	4.03383	4.24324e-5	2.22686e-6	8.98949e-4	8.65681e-5
chr7	131662143	131662239	9070169	0	-	0.416667	(0.39,0.42]	chr7	692784	3	EXON_PSEUDO	EXON_PSEUDO	EEF1B2P6	ENSG00000213261.3	ENST00000445713.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	44	2	3.56097	4.00536	4.44975	6.12149e-4	2.67778e-6	0.00818575	9.19863e-5
chr12	56273586	56273656	13349854	0	-	0.542857	(0.53,0.59]	chr12	1051006	1	CDS	CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6:ENST00000546621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.27113	4.00535	5.73957	0.0178853	3.90343e-6	0.0918323	1.26306e-4
chr3	41227207	41227279	3432491	0	+	0.388889	(0.36,0.39]	chr3	298546	1	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.02315	4.00529	4.98743	8.65481e-4	8.82225e-5	0.0100741	0.00178337
chr12	123291507	123291607	13595033	0	-	0.39	(0.36,0.39]	chr12	1070977	25	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	3.20198	4.00523	4.80848	4.4092e-4	1.65455e-7	0.0062930699999999996	8.63103e-6
chr1	45693633	45693719	175256	0	+	0.383721	(0.36,0.39]	chr1	22794	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	3.99	4.00521	4.02042	6.1616e-5	1.39717e-7	0.00133408	7.45332e-6
chr17	43266823	43266921	16552590	0	-	0.663265	(0.59,1]	chr17	1358307	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.4994	4.00496	5.51052	0.0333573	0.00019737500000000001	0.137922	0.00336487
chr16	69167074	69167129	15721866	0	+	0.418182	(0.39,0.42]	chr16	1251874	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1:ENST00000567287.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	2.48357	4.004915	5.52626	0.00171404	7.67816e-6	0.017714	2.20857e-4
chr1	28013202	28013294	911678	0	-	0.48913	(0.455,0.49]	chr1	95361	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.13787	4.004865	4.87186	4.66183e-4	2.33781e-4	0.00616585	0.00385436
chr13	67831875	67831970	14062124	0	-	0.452632	(0.42,0.455]	chr13	1101815	1	EXON_PSEUDO	EXON_PSEUDO	NPM1P22	ENSG00000227969.1	ENST00000427761.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.46169	4.004805	4.54792	0.03884	9.66045e-4	0.149227	0.0115185
chr19	39319049	39319144	17562965	0	-	0.452632	(0.42,0.455]	chr19	1475536	3	INTRON	INTRON	LRFN1	ENSG00000128011.5	ENST00000248668.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.46169	4.004805	4.54792	0.03884	9.66045e-4	0.149227	0.0115185
chr9	131577840	131577937	10870718	0	-	0.443299	(0.42,0.455]	chr9	824647	12	UTR3	UTR3:EXON_MRNA	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.46169	4.004805	4.54792	0.03884	9.66045e-4	0.149227	0.0115185
chr13	99537738	99537800	13865392	0	+	0.290323	(0.29,0.33]	chr13	1087170	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.76009	4.004709999999999	4.24933	3.08518e-4	1.02924e-5	0.00476847	2.83837e-4
chr19	35745930	35745991	17306623	0	+	0.508197	(0.49,0.53]	chr19	1431497	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSENEN:AC002398.9	ENSG00000205155.8:ENSG00000188223.9	ENST00000591949.1:ENST00000222266.2:ENST00000587708.7:ENST00000591613.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.44951	4.0044	4.55929	0.0405223	0.00116196	0.153343	0.0130851
chr22	20804299	20804349	18439522	0	-	0.52	(0.49,0.53]	chr22	1572006	1	CDS	CDS:EXON_MRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.44951	4.0044	4.55929	0.0405223	0.00116196	0.153343	0.0130851
chr17	38919775	38919875	16218422	0	+	0.55	(0.53,0.59]	chr17	1310821	11	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.37399	4.004365	5.63474	0.0126178	7.53339e-6	0.0717599	2.17987e-4
chrX	154354150	154354220	19278020	0	-	0.6	(0.59,1]	chrX	1638275	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000438732.2:ENST00000474072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	3.4666	4.004215	4.54183	0.0070583	0.00133574	0.0478044	0.0139317
chr19	50820346	50820443	17612013	0	-	0.525773	(0.49,0.53]	chr19	1485266	3	CDS	CDS:UTR3:EXON_MRNA	KLK1	ENSG00000167748.11	ENST00000301420.3:ENST00000593325.5:ENST00000593859.5:ENST00000596300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	3.7246	4.00396	4.28332	0.00338762	1.36405e-5	0.0288632	3.54667e-4
chr12	120496081	120496166	13116582	0	+	0.682353	(0.59,1]	chr12	1023811	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000549649.5:ENST00000548342.5:ENST00000548214.1:ENST00000392508.2:ENST00000550178.1:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000550845.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.59461	4.0039299999999995	5.41325	0.0259455	3.01546e-4	0.117079	0.00472028
chr2	47475106	47475188	1785238	0	+	0.414634	(0.39,0.42]	chr2	172511	2	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.11549	4.003835	4.89218	0.00403491	1.6518e-4	0.032143	0.0029267300000000002
chr6	147702772	147702872	7470285	0	+	0.37	(0.36,0.39]	chr6	571315	99	INTRON	INTRON	SAMD5:RP11-307P5.1	ENSG00000203727.4:ENSG00000227681.5	ENST00000566741.1:ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	63	2	3.48669	4.00369	4.52069	6.40815e-5	2.52404e-8	0.00125657	1.87484e-6
chr1	116388960	116389019	423788	0	+	0.423729	(0.42,0.455]	chr1	41779	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000491156.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	123	2	3.71365	4.00357	4.29349	2.63375e-4	3.93595e-10	0.00427022	4.59412e-8
chr9	104759435	104759533	10395933	0	+	0.336735	(0.33,0.36]	chr9	783255	2	UTR3	UTR3:EXON_MRNA	NIPSNAP3A	ENSG00000136783.10	ENST00000374767.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.83586	4.00354	4.17122	1.7178e-4	1.72402e-5	0.00302124	4.33531e-4
chr6	31839542	31839616	7116811	0	+	0.418919	(0.39,0.42]	chr6	546234	1	EXON_LNCRNA	EXON_LNCRNA	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	24	374	2	3.48734	4.003475	4.51961	4.17011e-9	1e-12	3.9646e-7	2.25522e-10
chr1	17022607	17022668	873028	0	-	0.52459	(0.49,0.53]	chr1	89435	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000475049.5:ENST00000485092.5:ENST00000485515.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	2.13501	4.00346	5.87191	0.0287874	9.67449e-7	0.128869	3.88631e-5
chr15	92989454	92989553	15115034	0	+	0.353535	(0.33,0.36]	chr15	1189510	34	INTRON	INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000637572.1:ENST00000636881.1:ENST00000636306.1:ENST00000637789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	3.48385	4.003255	4.52266	8.34989e-4	9.93473e-6	0.0102956	2.74996e-4
chr16	23585335	23585423	15895381	0	-	0.397727	(0.39,0.42]	chr16	1272291	1	CDS	CDS:UTR3:EXON_MRNA	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5:ENST00000567761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	90	2	3.70471	4.00308	4.30145	7.39643e-6	9.86714e-8	2.35326e-4	5.5198e-6
chr5	83052943	83053042	6673206	0	-	0.373737	(0.36,0.39]	chr5	515109	2	UTR3	UTR3:EXON_MRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	3.63195	4.003025	4.3741	4.74881e-6	6.58419e-7	1.63715e-4	2.80477e-5
chr1	198756579	198756679	648502	0	+	0.33	(0.29,0.33]	chr1	65229	5	UTR3	UTR3:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000442510.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.55049	4.002915	4.45534	0.00110984	6.15323e-4	0.0127344	0.00765848
chr3	47683870	47683968	4162742	0	-	0.295918	(0.29,0.33]	chr3	348397	30	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.55049	4.002915	4.45534	0.00110984	6.15323e-4	0.0127344	0.00765848
chrX	151409266	151409364	18909833	0	+	0.295918	(0.29,0.33]	chrX	1610139	44	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.55049	4.002915	4.45534	0.00110984	6.15323e-4	0.0127344	0.00765848
chr2	61880339	61880394	2691457	0	-	0.509091	(0.49,0.53]	chr2	240577	2	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	3.1011	4.0028950000000005	4.90469	5.69237e-4	8.91237e-8	0.00778538	5.05835e-6
chr2	117825020	117825101	2021810	0	+	0.395062	(0.39,0.42]	chr2	191095	2	CDS	CDS:EXON_MRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000415038.1:ENST00000476149.1:ENST00000461443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.32811	4.00288	4.67765	0.00182819	7.04737e-4	0.0183913	0.00848325
chr11	954593	954693	11759756	0	+	0.29	[0,0.29]	chr11	898696	62	INTRON	INTRON	AP2A2	ENSG00000183020.14	ENST00000529818.5:ENST00000332231.9:ENST00000448903.7:ENST00000529858.5:ENST00000525796.5:ENST00000534328.5:ENST00000528815.5:ENST00000528195.5:ENST00000531548.5:ENST00000534485.5:ENST00000527024.1:ENST00000526753.5:ENST00000530801.5:ENST00000524559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	3.08203	4.00262	4.92321	7.1311e-4	1.17014e-4	0.0085671400000000009	0.00222617
chr6	30704611	30704710	7659043	0	-	0.585859	(0.53,0.59]	chr6	584223	11	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.33569	4.002525	4.66936	0.00103174	1.57373e-4	0.0121443	0.00260854
chr7	76060372	76060435	8342340	0	+	0.460317	(0.455,0.49]	chr7	636238	1	CDS	CDS:EXON_MRNA:INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2:ENST00000424167.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	138	2	3.85088	4.0024049999999995	4.15393	5.77607e-7	1.50064e-9	2.77476e-5	1.50704e-7
chr11	57425595	57425695	12394624	0	-	0.48	(0.455,0.49]	chr11	958693	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC43A3	ENSG00000134802.18	ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000529113.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5:ENST00000530232.1:ENST00000528187.5:ENST00000529494.5:ENST00000533245.5:ENST00000533235.5:ENST00000524863.5:ENST00000532795.5:ENST00000533051.5:ENST00000529896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	116	2	3.60701	4.0020299999999995	4.39705	8.32004e-7	4.29972e-9	3.41255e-5	4.06931e-7
chr1	15604596	15604685	69363	0	+	0.707865	(0.59,1]	chr1	7744	1	EXON_PSEUDO	EXON_PSEUDO	CHCHD2P6	ENSG00000235084.3	ENST00000454346.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	41	2	3.06258	4.00194	4.9413	0.00616167	0.00191468	0.0438642	0.0190905
chr19	12885407	12885499	17471809	0	-	0.673913	(0.59,1]	chr19	1463277	2	CDS	CDS:EXON_MRNA	KLF1	ENSG00000105610.6	ENST00000264834.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.99438	4.001915	5.00945	0.00776449	0.00149725	0.050813	0.0159607
chr3	9838015	9838115	4030854	0	-	0.63	(0.59,1]	chr3	338269	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPUSD3	ENSG00000156990.14	ENST00000383820.9:ENST00000433535.6:ENST00000423108.5:ENST00000464783.1:ENST00000466141.1:ENST00000424438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.99438	4.001915	5.00945	0.00776449	0.00149725	0.050813	0.0159607
chr1	230997163	230997263	751412	0	+	0.43	(0.42,0.455]	chr1	76382	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ARV1	ENSG00000173409.14	ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	3.65978	4.001555	4.34333	2.09396e-5	5.37112e-6	5.04211e-4	1.79904e-4
chr1	151366274	151366363	1292890	0	-	0.595506	(0.59,1]	chr1	129191	1	CDS	CDS:UTR3:EXON_MRNA	SELENBP1	ENSG00000143416.21	ENST00000368868.10:ENST00000493560.5:ENST00000474352.5:ENST00000426705.6:ENST00000447402.7:ENST00000443708.5:ENST00000470345.5:ENST00000455397.5:ENST00000427977.6:ENST00000423070.5:ENST00000463664.5:ENST00000424475.5:ENST00000458566.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr1	156294017	156294090	1313985	0	-	0.616438	(0.59,1]	chr1	133376	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	GLMP	ENSG00000198715.13	ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000481050.1:ENST00000476177.6:ENST00000497955.1:ENST00000368264.1:ENST00000479084.1:ENST00000484214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr11	46320746	46320840	11934749	0	+	0.62766	(0.59,1]	chr11	912340	1	UTR3	UTR3:EXON_MRNA	CREB3L1	ENSG00000157613.11	ENST00000621158.5:ENST00000616094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr12	6620320	6620412	13187589	0	-	0.663043	(0.59,1]	chr12	1032446	2	CDS	CDS:EXON_MRNA	LPAR5	ENSG00000184574.10	ENST00000329858.9:ENST00000431922.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr16	88532861	88532935	15806005	0	+	0.675676	(0.59,1]	chr16	1257886	2	CDS	CDS:EXON_MRNA	ZFPM1	ENSG00000179588.9	ENST00000319555.8	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr22	49907869	49907944	18545274	0	-	0.68	(0.59,1]	chr22	1584121	3	CDS	CDS:EXON_MRNA	ALG12	ENSG00000182858.14	ENST00000330817.11:ENST00000486602.1:ENST00000492791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr5	95731958	95732014	6107854	0	+	0.696429	(0.59,1]	chr5	478201	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHOBTB3	ENSG00000164292.13	ENST00000510226.5:ENST00000515852.5:ENST00000504949.1:ENST00000506959.5:ENST00000506817.1:ENST00000379982.8:ENST00000512878.1:ENST00000510623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr7	75882073	75882173	8341216	0	+	0.64	(0.59,1]	chr7	636069	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RHBDD2	ENSG00000005486.17	ENST00000466232.5:ENST00000468644.5:ENST00000318622.8:ENST00000454791.1:ENST00000006777.11:ENST00000468304.1:ENST00000428119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.98751	4.00148	4.01545	0.0301044	0.0251889	0.129773	0.114168
chr1	235738299	235738398	766969	0	+	0.373737	(0.36,0.39]	chr1	77403	4	EXON_PSEUDO	EXON_PSEUDO	LDHAP2	ENSG00000235674.2	ENST00000437325.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	100	2	3.24031	4.00132	4.76233	1.85847e-6	2.39319e-9	6.75123e-5	2.44437e-7
chr12	53462511	53462567	12886558	0	+	0.642857	(0.59,1]	chr12	1002438	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	11	329	2	3.71199	4.00131	4.29063	1.23508e-6	5.81334e-8	5.2734e-5	3.50288e-6
chr1	12135587	12135613	46790	0	+	0.576923	(0.53,0.59]	chr1	6057	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5:ENST00000413146.6:ENST00000479933.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr1	12206739	12206829	47296	0	+	0.566667	(0.53,0.59]	chr1	6128	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr11	252504	252600	11756142	0	+	0.5625	(0.53,0.59]	chr11	897610	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD13	ENSG00000185627.18	ENST00000532097.6:ENST00000431206.6:ENST00000621534.4:ENST00000525665.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1:ENST00000527982.1:ENST00000532025.1:ENST00000529679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr11	57552357	57552457	12395047	0	-	0.58	(0.53,0.59]	chr11	958834	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2L6	ENSG00000156587.16	ENST00000340573.8:ENST00000287156.9:ENST00000528275.1:ENST00000527022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr12	4288841	4288915	12704328	0	+	0.540541	(0.53,0.59]	chr12	985532	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1:ENST00000536795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr14	102050148	102050226	14495921	0	+	0.589744	(0.53,0.59]	chr14	1133282	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr17	41883121	41883176	16543910	0	-	0.581818	(0.53,0.59]	chr17	1356494	1	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr17	42317181	42317224	16547457	0	-	0.534884	(0.53,0.59]	chr17	1357264	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000462269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr17	76564184	76564281	16359191	0	+	0.536082	(0.53,0.59]	chr17	1328581	12	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr2	239084542	239084642	3241425	0	-	0.57	(0.53,0.59]	chr2	285779	3	SS3_PROX	SS3_PROX:INTRON	HDAC4	ENSG00000068024.17	ENST00000543185.6:ENST00000345617.7:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr22	31712082	31712180	18474441	0	-	0.530612	(0.53,0.59]	chr22	1576846	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRR14L	ENSG00000183530.14	ENST00000330495.8:ENST00000327423.11:ENST00000431684.1:ENST00000492705.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr22	36314144	36314231	18498364	0	-	0.586207	(0.53,0.59]	chr22	1578226	1	CDS	CDS:EXON_MRNA	MYH9	ENSG00000100345.22	ENST00000216181.11	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr7	44571491	44571572	8800166	0	-	0.567901	(0.53,0.59]	chr7	671312	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX56	ENSG00000136271.11	ENST00000258772.10:ENST00000446987.5:ENST00000421223.5:ENST00000485367.5:ENST00000467318.5:ENST00000433257.5:ENST00000431640.5:ENST00000415758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chrX	154403268	154403324	19278305	0	-	0.571429	(0.53,0.59]	chrX	1638397	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DNASE1L1	ENSG00000013563.14	ENST00000369807.6:ENST00000369809.5:ENST00000393638.5:ENST00000014935.7:ENST00000369808.7:ENST00000309585.9:ENST00000497242.1:ENST00000447892.1:ENST00000451865.5:ENST00000412184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.99819	4.001060000000001	4.00393	0.0111308	0.0108084	0.0665375	0.064368
chr20	32149699	32149766	17752467	0	+	0.537313	(0.53,0.59]	chr20	1498498	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	3.2308500000000002	4.000955	4.77106	2.81517e-4	3.13573e-7	0.00415519	1.66999e-5
chr1	51761918	51761971	191416	0	+	0.471698	(0.455,0.49]	chr1	24514	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.49306	4.000555	4.50805	0.00122223	6.07633e-5	0.0135383	0.00121305
chr7	6054545	6054608	8662730	0	-	0.507937	(0.49,0.53]	chr7	662615	1	CDS	CDS:UTR3:EXON_MRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.4415	4.000395	4.55929	0.00116196	9.98297e-4	0.0130851	0.0111246
chr8	18056858	18056954	9732799	0	-	0.354167	(0.33,0.36]	chr8	736286	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.51887	4.000365	5.48186	0.0358636	7.22374e-6	0.147298	2.11873e-4
chr2	96186532	96186630	2789826	0	-	0.377551	(0.36,0.39]	chr2	248609	18	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	3.74283	4.000325	4.25782	1.50915e-5	2.39021e-7	4.23797e-4	1.17849e-5
chr16	58162486	58162584	15965650	0	-	0.285714	[0,0.29]	chr16	1280935	31	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	3.63488	4.00015	4.36542	7.12896e-4	4.63077e-6	0.00897774	1.453e-4
chr17	28467918	28468016	16175936	0	+	0.469388	(0.455,0.49]	chr17	1305136	2	EXON_PSEUDO	EXON_PSEUDO	RPS7P1	ENSG00000263266.2	ENST00000571702.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	2.85172	3.9997299999999996	5.14774	0.010864	7.45457e-5	0.0643837	0.00142165
chr11	119021790	119021886	12161697	0	+	0.385417	(0.36,0.39]	chr11	937589	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000528230.5:ENST00000525079.5:ENST00000533012.1:ENST00000533149.1:ENST00000524797.1:ENST00000526141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.96717	3.9996849999999995	4.0322	0.00588589	6.17763e-5	0.0427941	0.00122919
chr1	32779381	32779452	923509	0	-	0.492958	(0.49,0.53]	chr1	97318	1	CDS	CDS:UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5:ENST00000478828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.43991	3.9996	4.55929	0.00116196	8.40266e-5	0.0130851	0.00158427
chr12	53512551	53512651	13339474	0	-	0.51	(0.49,0.53]	chr12	1049176	6	UTR3	UTR3:EXON_MRNA:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.43991	3.9996	4.55929	0.00116196	8.40266e-5	0.0130851	0.00158427
chr17	42495033	42495110	16228538	0	+	0.402597	(0.39,0.42]	chr17	1312943	1	CDS	CDS:EXON_MRNA:PRIMIRNA	ATP6V0A1:MIR548AT	ENSG00000033627.17:ENSG00000264314.1	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000578714.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	24	2	2.99507	3.99949	5.00391	0.00637824	9.12714e-5	0.0449937	0.00182992
chr7	12688676	12688757	8136652	0	+	0.419753	(0.39,0.42]	chr7	621814	5	CDS	CDS:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396662.5:ENST00000356797.7:ENST00000396664.2:ENST00000396663.2:ENST00000651779.1:ENST00000404894.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.99507	3.99949	5.00391	0.00637824	9.12714e-5	0.0449937	0.00182992
chr10	110286275	110286374	11250206	0	+	0.333333	(0.33,0.36]	chr10	857033	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000361248.8:ENST00000239007.11:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000652463.1:ENST00000650810.1:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000652323.1:ENST00000651112.1:ENST00000485566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.65992	3.99944	4.33896	0.00182033	3.45596e-4	0.0183913	0.00486237
chr8	143731097	143731196	10145639	0	-	0.343434	(0.33,0.36]	chr8	762693	1	INTRON	INTRON	FAM83H	ENSG00000180921.7	ENST00000650760.1:ENST00000388913.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.65992	3.99944	4.33896	0.00182033	3.45596e-4	0.0183913	0.00486237
chr14	24238841	24238905	14180626	0	+	0.484375	(0.455,0.49]	chr14	1111694	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GMPR2	ENSG00000100938.18	ENST00000355299.8:ENST00000620807.4:ENST00000559836.5:ENST00000561038.5:ENST00000559287.5:ENST00000559910.5:ENST00000348719.11:ENST00000420554.6:ENST00000557854.5:ENST00000399440.7:ENST00000559104.5:ENST00000456667.7:ENST00000558483.5:ENST00000558748.1:ENST00000559479.1:ENST00000558788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.49033	3.99919	4.50805	0.00122223	7.92678e-4	0.0135383	0.00933379
chr5	14797811	14797909	6463519	0	-	0.489796	(0.455,0.49]	chr5	503014	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	ANKH:RBBP4P1	ENSG00000154122.14:ENSG00000249485.1	ENST00000284268.8:ENST00000513115.1:ENST00000502424.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	1	26	2	3.49033	3.99919	4.50805	0.00122223	7.92678e-4	0.0135383	0.00933379
chr17	5433353	5433415	16421512	0	-	0.467742	(0.455,0.49]	chr17	1338177	2	CDS	CDS:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573204.1:ENST00000573421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	3.719	3.9990300000000003	4.27906	1.42274e-5	8.82347e-6	4.02509e-4	2.48294e-4
chr11	61329957	61330015	12404222	0	-	0.5	(0.49,0.53]	chr11	960278	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5:ENST00000538129.1:ENST00000542337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.72252	3.998645	5.27477	0.0161474	4.14521e-5	0.0860154	8.8376e-4
chr7	6434933	6435020	8664387	0	-	0.494253	(0.49,0.53]	chr7	662793	3	CDS	CDS:EXON_MRNA:INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.72252	3.998645	5.27477	0.0161474	4.14521e-5	0.0860154	8.8376e-4
chrX	55021125	55021199	19084679	0	-	0.513514	(0.49,0.53]	chrX	1623763	2	CDS	CDS:EXON_MRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	3.96681	3.9985749999999998	4.03034	4.26396e-5	2.40034e-7	9.97006e-4	1.18282e-5
chr5	75350257	75350315	6037048	0	+	0.586207	(0.53,0.59]	chr5	473617	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	121	2	3.90017	3.998465	4.09676	3.14727e-5	2.35304e-8	7.72298e-4	1.62079e-6
chr11	5343424	5343524	12241528	0	-	0.47	(0.455,0.49]	chr11	946163	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	49	2	3.3605	3.998285	4.63607	0.00147278	6.94376e-7	0.0157578	2.92826e-5
chr5	115620598	115620680	6777055	0	-	0.365854	(0.36,0.39]	chr5	519923	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000456936.4:ENST00000503010.1:ENST00000508420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.76778	3.99811	5.22844	0.00365703	4.38129e-9	0.0307238	3.79596e-7
chr2	27071362	27071448	2569033	0	-	0.55814	(0.53,0.59]	chr2	231082	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA	OST4	ENSG00000228474.6	ENST00000456793.2:ENST00000447619.5:ENST00000429985.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.52856	3.9980900000000004	5.46762	0.00107225	1.97761e-5	0.0118238	5.29643e-4
chr12	53669870	53669948	13341013	0	-	0.564103	(0.53,0.59]	chr12	1049279	1	CDS	CDS:UTR5:EXON_MRNA	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2:ENST00000552120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	143	2	3.95183	3.997985	4.04414	1.4954e-7	5.60699e-8	7.9385e-6	3.74169e-6
chr19	18575050	18575139	17258831	0	+	0.561798	(0.53,0.59]	chr19	1425552	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000595683.5:ENST00000595158.5:ENST00000598780.5:ENST00000599551.5:ENST00000597451.5:ENST00000599595.5:ENST00000596272.5:ENST00000594527.1	protein_coding	protein_coding	protein_coding	protein_coding	25	473	2	3.63769	3.997975	4.35826	1.12083e-9	2.31914e-12	1.26546e-7	4.77068e-10
chr1	67259028	67259128	264126	0	+	0.35	(0.33,0.36]	chr1	29506	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.473	3.99783	4.52266	8.77304e-4	8.34989e-4	0.0102956	0.0101202
chr12	93575849	93575948	13019803	0	+	0.333333	(0.33,0.36]	chr12	1013520	3	UTR3	UTR3:EXON_MRNA:INTRON	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000551556.2:ENST00000551883.1:ENST00000549510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.473	3.99783	4.52266	8.77304e-4	8.34989e-4	0.0102956	0.0101202
chr22	21451364	21451463	18302378	0	+	0.333333	(0.33,0.36]	chr22	1554129	48	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.473	3.99783	4.52266	8.77304e-4	8.34989e-4	0.0102956	0.0101202
chrY	24847480	24847580	19332648	0	+	0.34	(0.33,0.36]	chrY	1644187	45	INTRON	INTRON	DAZ4	ENSG00000205916.12	ENST00000415508.6:ENST00000382314.6:ENST00000449750.7:ENST00000682740.1:ENST00000382432.9:ENST00000440066.6:ENST00000382296.4:ENST00000634662.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.473	3.99783	4.52266	8.77304e-4	8.34989e-4	0.0102956	0.0101202
chr19	28436434	28436529	17525169	0	-	0.484211	(0.455,0.49]	chr19	1470903	12	EXON_LNCRNA	EXON_LNCRNA	AC005307.5	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.69169	3.9978	5.30391	0.00126948	3.12735e-5	0.0139061	6.97306e-4
chr10	68982910	68983008	11093406	0	+	0.326531	(0.29,0.33]	chr10	843302	2	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	3.70788	3.9975899999999998	4.2873	1.58728e-5	1.19649e-5	4.0383e-4	3.513e-4
chr16	23665645	23665745	15595083	0	+	0.47	(0.455,0.49]	chr16	1236688	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000566298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.69053	3.99722	5.30391	0.0182983	3.12735e-5	0.0925808	6.97306e-4
chr1	30872618	30872717	915895	0	-	0.535354	(0.53,0.59]	chr1	95914	33	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.97928	3.9970950000000003	6.01491	0.0218546	6.18274e-7	0.104785	2.65059e-5
chr1	28506013	28506084	117076	0	+	0.450704	(0.42,0.455]	chr1	14289	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000447507.1:ENST00000434290.6:ENST00000373833.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	18	278	2	3.84056	3.99703	4.1535	5.66781e-10	3.33078e-11	6.97204e-8	5.09671e-9
chr17	48051464	48051546	16253278	0	+	0.621951	(0.59,1]	chr17	1317094	4	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.98751	3.996875	4.00624	0.0301044	1.12192e-4	0.129773	0.00199438
chr10	103392193	103392283	11672889	0	-	0.366667	(0.36,0.39]	chr10	890275	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ATP5MK	ENSG00000173915.16	ENST00000369825.6:ENST00000369815.6:ENST00000309579.7:ENST00000337003.4:ENST00000369811.5	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.18868	3.99681	5.80494	0.00436393	9.78955e-7	0.0340502	3.91899e-5
chr2	128172667	128172762	2060322	0	+	0.378947	(0.36,0.39]	chr2	193324	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	2.18868	3.99681	5.80494	0.00436393	9.78955e-7	0.0340502	3.91899e-5
chrX	85090645	85090744	18751859	0	+	0.40404	(0.39,0.42]	chrX	1600208	31	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.35466	3.9967449999999998	4.63883	5.68159e-4	1.40185e-4	0.0077844	0.00236775
chr9	37485947	37486047	10255411	0	+	0.63	(0.59,1]	chr9	771722	1	UTR5	UTR5:EXON_MRNA	POLR1E	ENSG00000137054.16	ENST00000377798.9:ENST00000442009.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.36223	3.996645	4.63106	0.00537945	0.00203572	0.0406564	0.0192213
chr3	12583691	12583782	4040901	0	-	0.362637	(0.36,0.39]	chr3	339179	2	UTR3	UTR3:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.63115	3.99653	5.36191	0.0245975	1.79406e-5	0.114841	4.45904e-4
chr11	47580834	47580909	11940508	0	+	0.506667	(0.49,0.53]	chr11	913281	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000528192.5:ENST00000534208.5:ENST00000530295.5:ENST00000263774.9:ENST00000534716.2:ENST00000533105.1:ENST00000524568.1:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.59881	3.9963999999999995	5.39399	0.00184545	1.71804e-5	0.0178046	4.72485e-4
chr1	180182246	180182319	582759	0	+	0.575342	(0.53,0.59]	chr1	60544	2	CDS	CDS:UTR3:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	3.55001	3.9962799999999996	4.44255	6.11776e-4	3.41603e-6	0.00818575	1.12474e-4
chr16	28380711	28380791	15904985	0	-	0.5875	(0.53,0.59]	chr16	1273451	2	CDS	CDS:EXON_MRNA	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.65894	3.996225	5.33351	0.0193255	4.35359e-5	0.0943643	0.00091744700000000005
chr5	140647308	140647362	6871665	0	-	0.537037	(0.53,0.59]	chr5	526121	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFA2	ENSG00000131495.9	ENST00000510680.1:ENST00000252102.9:ENST00000512088.1:ENST00000502960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.65894	3.996225	5.33351	0.0193255	4.35359e-5	0.0943643	0.00091744700000000005
chr1	229321992	229322090	1541529	0	-	0.408163	(0.39,0.42]	chr1	154303	11	UTR3	UTR3:EXON_MRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.02663	3.99599	5.96535	0.0130764	3.80804e-7	0.0729985	1.7481e-5
chr1	15807649	15807748	867311	0	-	0.474747	(0.455,0.49]	chr1	88164	1	UTR5	UTR5:EXON_MRNA	UQCRHL	ENSG00000233954.6	ENST00000483273.2	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	3.17056	3.99594	4.82132	4.1243e-4	1.63946e-7	0.00604953	8.57024e-6
chr19	23827259	23827358	17276786	0	+	0.424242	(0.42,0.455]	chr19	1427763	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	38	603	2	3.49068	3.995875	4.50107	3.48613e-10	1e-12	4.56812e-8	2.25522e-10
chr9	131261178	131261264	10870369	0	-	0.534884	(0.53,0.59]	chr9	824568	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4:ENST00000464831.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.47	3.9958400000000003	5.52168	0.0089333	1.48967e-5	0.0567495	3.81697e-4
chr1	44780330	44780426	971746	0	-	0.447917	(0.42,0.455]	chr1	102494	1	EXON_PSEUDO	EXON_PSEUDO	RPS15AP11	ENSG00000234093.3	ENST00000594193.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	64	2	2.7523	3.995815	5.23933	0.0153283	4.91685e-9	0.0828908	4.17881e-7
chr16	23474982	23475061	15894457	0	-	0.518987	(0.49,0.53]	chr16	1272113	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000569182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.87268	3.99568	5.11868	0.00175078	9.66505e-5	0.0180053	0.00175267
chr3	52707686	52707712	3479521	0	+	0.538462	(0.53,0.59]	chr3	305086	1	CDS	CDS:EXON_MRNA	SPCS1	ENSG00000114902.14	ENST00000423431.5:ENST00000233025.11:ENST00000619898.5:ENST00000474945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.15403	3.9956700000000005	5.8373100000000004	0.0118065	2.06883e-6	0.0686664	7.35008e-5
chrX	48792055	48792138	18693000	0	+	0.566265	(0.53,0.59]	chrX	1594399	2	CDS	CDS:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	3.29588	3.995665	4.69545	1.96478e-4	5.62788e-7	0.00335505	2.45035e-5
chr4	56503010	56503106	4849159	0	+	0.302083	(0.29,0.33]	chr4	399579	13	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	3.18804	3.99563	4.80322	3.92193e-4	2.14303e-4	0.00539186	0.00359478
chr11	57415019	57415106	12394509	0	-	0.643678	(0.59,1]	chr11	958651	2	CDS	CDS:EXON_MRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5:ENST00000530005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	189	2	3.2313	3.995555	4.75981	9.87985e-5	5.38789e-8	0.00178726	3.62559e-6
chr19	18031069	18031163	17256833	0	+	0.521277	(0.49,0.53]	chr19	1424994	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	36	2	2.38683	3.995425	5.60402	0.012654	5.78803e-6	0.0718207	1.75119e-4
chr1	193253349	193253447	632589	0	+	0.357143	(0.33,0.36]	chr1	64294	28	UTR3	UTR3:EXON_MRNA	CDC73	ENSG00000134371.14	ENST00000367435.5	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	3.56695	3.99536	4.42377	1.08306e-7	7.21117e-8	5.98351e-6	4.67479e-6
chr1	1022271	1022342	2066	0	+	0.591549	(0.59,1]	chr1	458	2	CDS	CDS:UTR5:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr1	9730309	9730408	854611	0	-	0.666667	(0.59,1]	chr1	86233	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr11	34146639	34146729	11905974	0	+	0.6	(0.59,1]	chr11	909748	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAT10	ENSG00000135372.9	ENST00000257829.8:ENST00000527971.5:ENST00000615292.1:ENST00000534509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr17	28759163	28759262	16487321	0	-	0.606061	(0.59,1]	chr17	1348269	9	CDS	CDS:UTR3:EXON_MRNA	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000452648.8:ENST00000582059.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr17	38297102	38297183	16215578	0	+	0.604938	(0.59,1]	chr17	1310353	2	UTR5	UTR5:EXON_MRNA	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr17	78972562	78972633	16698078	0	-	0.661972	(0.59,1]	chr17	1376217	1	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5:ENST00000588508.1:ENST00000588198.5:ENST00000589527.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr19	10636497	10636585	17225811	0	+	0.693182	(0.59,1]	chr19	1418778	3	CDS	CDS:EXON_MRNA	SLC44A2	ENSG00000129353.15	ENST00000407327.8:ENST00000586078.5:ENST00000335757.10:ENST00000588393.5:ENST00000589561.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr19	15243193	15243291	17484970	0	-	0.673469	(0.59,1]	chr19	1465312	4	CDS	CDS:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr20	32807999	32808096	17755551	0	+	0.608247	(0.59,1]	chr20	1498916	2	UTR3	UTR3:EXON_MRNA	DNMT3B	ENSG00000088305.18	ENST00000328111.6:ENST00000348286.6:ENST00000353855.6:ENST00000443239.7:ENST00000456297.6:ENST00000201963.3	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr20	38131160	38131229	17962945	0	-	0.623188	(0.59,1]	chr20	1522313	2	CDS	CDS:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr20	62312705	62312780	18029093	0	-	0.68	(0.59,1]	chr20	1528555	2	CDS	CDS:EXON_MRNA	LAMA5	ENSG00000130702.15	ENST00000370691.6:ENST00000252999.7:ENST00000491036.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr9	136505404	136505499	10891125	0	-	0.610526	(0.59,1]	chr9	827645	2	CDS	CDS:UTR3:EXON_MRNA	NOTCH1	ENSG00000148400.13	ENST00000679595.1:ENST00000651671.1:ENST00000681454.1:ENST00000680668.1:ENST00000681135.1:ENST00000680218.1:ENST00000680778.1:ENST00000680924.1:ENST00000680133.1:ENST00000681298.1:ENST00000645828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.84557	3.9951999999999996	4.14483	0.0410704	0.0183207	0.163285	0.0945306
chr4	73091723	73091819	5466128	0	-	0.479167	(0.455,0.49]	chr4	437754	12	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.82961	3.9950900000000003	5.16057	2.1638e-4	9.41019e-9	0.00361336	7.37763e-7
chr1	434246	434346	821971	0	-	0.62	(0.59,1]	chr1	81335	540	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr1	30876749	30876849	915939	0	-	0.62	(0.59,1]	chr1	95928	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11:ENST00000471567.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr10	69180391	69180476	11094700	0	+	0.6	(0.59,1]	chr10	843470	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr11	73760802	73760886	12458630	0	-	0.75	(0.59,1]	chr11	968425	3	UTR5	UTR5:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000536566.5:ENST00000541588.5:ENST00000540771.5:ENST00000541795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr12	48938848	48938946	13322628	0	-	0.591837	(0.59,1]	chr12	1045238	33	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9:ENST00000485410.5:ENST00000447318.6:ENST00000541959.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr17	17814614	17814680	16465692	0	-	0.712121	(0.59,1]	chr17	1344689	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000447641.5:ENST00000581707.1:ENST00000490796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr17	82242858	82242954	16712119	0	-	0.604167	(0.59,1]	chr17	1378461	3	UTR3	UTR3:EXON_MRNA:INTRON	CSNK1D	ENSG00000141551.14	ENST00000584672.1:ENST00000398519.9:ENST00000314028.10:ENST00000581241.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr19	50480671	50480762	17376745	0	+	0.714286	(0.59,1]	chr19	1444740	2	CDS	CDS:UTR3:EXON_MRNA	EMC10	ENSG00000161671.17	ENST00000601780.5:ENST00000376918.7:ENST00000334976.11:ENST00000598585.1:ENST00000599293.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr22	30356855	30356919	18469904	0	-	0.734375	(0.59,1]	chr22	1575902	2	UTR5	UTR5:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000447376.1:ENST00000463818.1:ENST00000496189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr22	50503559	50503629	18547896	0	-	0.685714	(0.59,1]	chr22	1584996	2	CDS	CDS:EXON_MRNA	LMF2	ENSG00000100258.18	ENST00000474879.7:ENST00000216080.5:ENST00000504717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr5	140567269	140567365	6255378	0	+	0.635417	(0.59,1]	chr5	487695	1	CDS	CDS:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr7	72943026	72943125	8330205	0	+	0.606061	(0.59,1]	chr7	634054	13	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr9	132991050	132991141	10502729	0	+	0.692308	(0.59,1]	chr9	794051	1	UTR3	UTR3:EXON_MRNA	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5:ENST00000636263.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chrX	48600318	48600402	18692398	0	+	0.654762	(0.59,1]	chrX	1594233	1	CDS	CDS:UTR3:EXON_MRNA	WDR13	ENSG00000101940.18	ENST00000376729.10:ENST00000218056.9:ENST00000498631.5:ENST00000479279.5:ENST00000466962.1:ENST00000495575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.87333	3.995025	4.11672	0.0348991	0.0222273	0.141505	0.105595
chr12	57716088	57716140	12904290	0	+	0.403846	(0.39,0.42]	chr12	1005877	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550438.5:ENST00000550699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	2.22707	3.9947549999999996	5.76244	0.00574688	1.61725e-6	0.0426551	5.98677e-5
chr19	46778674	46778752	17595496	0	-	0.628205	(0.59,1]	chr19	1481400	1	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1	protein_coding	protein_coding	protein_coding	protein_coding	12	404	2	3.87331	3.99474	4.11617	8.95645e-8	2.15219e-8	5.08254e-6	1.63348e-6
chr3	61742826	61742919	4232429	0	-	0.55914	(0.53,0.59]	chr3	356045	5	EXON_PSEUDO	EXON_PSEUDO	RPL10AP6	ENSG00000226360.5	ENST00000472730.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	107	2	3.98962	3.994525	3.99943	2.29235e-6	2.15316e-7	8.86852e-5	1.08055e-5
chr5	75351067	75351149	6037060	0	+	0.365854	(0.36,0.39]	chr5	473625	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	132	2	3.93526	3.99439	4.05352	3.40806e-7	1.02185e-9	1.78722e-5	1.06833e-7
chr9	92080869	92080963	10736140	0	-	0.393617	(0.39,0.42]	chr9	812153	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5:ENST00000337841.4:ENST00000477888.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	3.3111	3.994375	4.67765	7.04737e-4	2.11919e-4	0.00848325	0.00357806
chr18	49282085	49282175	17117649	0	-	0.422222	(0.42,0.455]	chr18	1405417	2	CDS	CDS:EXON_MRNA	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	3.37962	3.99429	4.60896	1.2947e-4	8.72604e-7	0.00242147	3.55816e-5
chr5	10403406	10403473	5875213	0	+	0.447761	(0.42,0.455]	chr5	461983	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	86	2	3.88373	3.994125	4.10452	8.219e-7	4.66503e-7	3.75569e-5	2.08206e-5
chr2	96277878	96277950	2790285	0	-	0.513889	(0.49,0.53]	chr2	248702	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	3.52514	3.994085	4.46303	4.98361e-5	2.57025e-6	0.0011306	8.8687100000000007e-05
chr8	42403310	42403385	9305639	0	+	0.413333	(0.39,0.42]	chr8	712506	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	VDAC3	ENSG00000078668.14	ENST00000522572.5:ENST00000022615.9:ENST00000521158.5:ENST00000522010.1:ENST00000524291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	3.44923	3.99391	4.53859	0.00105208	1.40716e-6	0.0123035	5.32869e-5
chr12	53676083	53676175	13341082	0	-	0.608696	(0.59,1]	chr12	1049296	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000552242.5:ENST00000549164.5:ENST00000338662.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.38614	3.993895	5.60165	0.0128707	1.30928e-4	0.0725185	0.00243846
chr12	54519186	54519259	12893864	0	+	0.547945	(0.53,0.59]	chr12	1003156	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2:ENST00000549451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.67993	3.9938450000000003	4.30776	0.00407289	3.22778e-4	0.0324137	0.0046122
chr16	18551446	18551539	15876815	0	-	0.537634	(0.53,0.59]	chr16	1269229	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000562312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.67993	3.9938450000000003	4.30776	0.00407289	3.22778e-4	0.0324137	0.0046122
chr10	124778172	124778272	11731171	0	-	0.36	(0.33,0.36]	chr10	895200	30	INTRON	INTRON	RP11-12J10.3:EEF1AKMT2	ENSG00000258539.1:ENSG00000203791.15	ENST00000494792.1:ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	3.93997	3.9938400000000005	4.04771	9.37165e-5	1.07938e-7	0.00186979	5.96435e-6
chr7	30912103	30912198	8206086	0	+	0.642105	(0.59,1]	chr7	626014	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	1.81066	3.99367	6.17668	0.0369806	7.29392e-6	0.145401	2.3256e-4
chr1	101786339	101786436	1200893	0	-	0.597938	(0.59,1]	chr1	117316	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	111	2	3.61569	3.99356	4.37143	6.53412e-5	1.58503e-5	0.00139607	4.03494e-4
chr19	6534782	6534874	17213524	0	+	0.695652	(0.59,1]	chr19	1415922	3	CDS	CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	3	151	2	3.24972	3.99355	4.73738	0.00314037	6.29657e-8	0.0264943	4.15408e-6
chr6	43523771	43523867	7708073	0	-	0.5	(0.49,0.53]	chr6	591455	16	UTR3	UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	2.16476	3.9934649999999996	5.82217	0.00364507	1.36598e-6	0.0306714	5.18684e-5
chr9	112223751	112223850	10802920	0	-	0.363636	(0.36,0.39]	chr9	818409	62	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	10	147	2	3.59319	3.9933549999999998	4.39352	2.95973e-7	1.08385e-10	1.59277e-5	1.45549e-8
chrX	110198420	110198519	19169145	0	-	0.515152	(0.49,0.53]	chrX	1630483	44	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AMMECR1	ENSG00000101935.11	ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.60476	3.99334	4.38192	0.00259709	4.52633e-4	0.0229695	0.00642319
chr20	31801080	31801170	17749990	0	+	0.555556	(0.53,0.59]	chr20	1498093	1	UTR3	UTR3:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.39416	3.9932999999999996	4.59244	0.00126006	1.19382e-6	0.013837	4.64223e-5
chr12	4304660	4304759	12704490	0	+	0.50505	(0.49,0.53]	chr12	985544	48	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.78773	3.99328	5.19883	0.00257389	6.30063e-5	0.0235767	0.00124286
chr16	2972871	2972952	15827585	0	-	0.580247	(0.53,0.59]	chr16	1262865	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000574333.1:ENST00000440027.6:ENST00000575040.1:ENST00000262300.13:ENST00000575981.1:ENST00000574680.1:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	3.75615	3.993185	4.23022	2.16536e-4	1.38676e-5	0.00361336	3.5918e-4
chr1	165649847	165649947	515842	0	+	0.49	(0.455,0.49]	chr1	55470	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000461308.1:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000488688.1:ENST00000367883.3:ENST00000627653.1:ENST00000609263.1:ENST00000477450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.83859	3.993165	5.14774	0.00215336	7.45457e-5	0.0208395	0.00142165
chr2	24018333	24018433	1677518	0	+	0.55	(0.53,0.59]	chr2	164015	2	EXON_MRNA	EXON_MRNA:INTRON	MFSD2B	ENSG00000205639.12	ENST00000669179.1:ENST00000406420.7:ENST00000338315.6:ENST00000495018.1:ENST00000469562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	197	2	3.97472	3.993125	4.01153	1.92278e-7	1.60046e-9	1.10123e-5	1.59782e-7
chr1	26774328	26774416	110947	0	+	0.579545	(0.53,0.59]	chr1	13337	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1:ENST00000636072.1:ENST00000466382.2:ENST00000636794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.21941	3.99287	4.76633	0.00266171	6.98999e-4	0.0240332	0.00846751
chr7	143307015	143307112	8581154	0	+	0.57732000000000006	(0.53,0.59]	chr7	655693	21	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.1234	3.9928600000000003	4.86232	0.00390623	4.57805e-4	0.0322851	0.00608573
chrX	154534034	154534097	19278710	0	-	0.555556	(0.53,0.59]	chrX	1638556	1	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000489497.1:ENST00000433845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.1234	3.9928600000000003	4.86232	0.00390623	4.57805e-4	0.0322851	0.00608573
chr3	12583965	12584056	4040904	0	-	0.527473	(0.49,0.53]	chr3	339179	5	UTR3	UTR3:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.19483	3.992845	4.79086	4.20783e-4	6.77168e-5	0.00611538	0.0013157
chr12	56111245	56111309	12898075	0	+	0.546875	(0.53,0.59]	chr12	1004161	2	CDS	CDS:EXON_MRNA:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11:ENST00000552266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	81	2	3.2901	3.992775	4.69545	3.76429e-5	5.62788e-7	9.04578e-4	2.45035e-5
chr1	236599553	236599624	1568726	0	-	0.380282	(0.36,0.39]	chr1	157162	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6:ENST00000483073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.39803	3.99275	4.58747	0.00122711	6.55819e-4	0.0130695	0.00860229
chr2	20249089	20249188	2540628	0	-	0.383838	(0.36,0.39]	chr2	228490	5	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.39803	3.99275	4.58747	0.00122711	6.55819e-4	0.0130695	0.00860229
chr4	185161132	185161230	5832046	0	-	0.387755	(0.36,0.39]	chr4	458275	16	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.39803	3.99275	4.58747	0.00122711	6.55819e-4	0.0130695	0.00860229
chr12	51048382	51048456	12876034	0	+	0.635135	(0.59,1]	chr12	1000551	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000551261.5:ENST00000546992.5:ENST00000548390.5:ENST00000548401.1:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	3.27003	3.992565	4.7151	0.00412279	3.45884e-4	0.0325842	0.00486309
chr1	17027806	17027865	873086	0	-	0.372881	(0.36,0.39]	chr1	89450	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5:ENST00000475506.1:ENST00000463045.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	49	2	3.74315	3.992545	4.24194	0.00276729	1.37919e-6	0.0247437	5.23299e-5
chr11	57494120	57494171	12394773	0	-	0.568627	(0.53,0.59]	chr11	958762	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000529452.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	3.98115	3.99254	4.00393	0.0108084	6.28226e-5	0.064368	0.00124286
chr3	13343174	13343238	4046478	0	-	0.546875	(0.53,0.59]	chr3	339619	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.98115	3.99254	4.00393	0.0108084	6.28226e-5	0.064368	0.00124286
chr7	103561812	103561882	8963892	0	-	0.557143	(0.53,0.59]	chr7	686208	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.98115	3.99254	4.00393	0.0108084	6.28226e-5	0.064368	0.00124286
chrX	47657182	47657206	19061131	0	-	0.5	(0.49,0.53]	chrX	1620034	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000485641.5:ENST00000460840.5:ENST00000376964.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.38097	3.992495	5.60402	0.0425419	5.78803e-6	0.167547	1.75119e-4
chr12	56138926	56139013	12898375	0	+	0.505747	(0.49,0.53]	chr12	1004291	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550878.5:ENST00000551112.1:ENST00000548142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	47	2	2.59093	3.99246	5.39399	7.86196e-4	1.71804e-5	0.00929193	4.72485e-4
chr22	20569131	20569229	18299014	0	+	0.520408	(0.49,0.53]	chr22	1553487	1	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.21413	3.992385	5.77064	0.00995539	1.94063e-6	0.0621728	6.9799e-5
chr4	98887078	98887163	5547747	0	-	0.458824	(0.455,0.49]	chr4	443091	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000505194.5:ENST00000507665.5:ENST00000505829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.47671	3.99238	4.50805	0.0368644	0.00122223	0.145024	0.0135383
chr11	94471573	94471666	12546135	0	-	0.419355	(0.39,0.42]	chr11	973537	1	CDS	CDS:EXON_MRNA	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.49145	3.9923450000000003	4.49324	0.0350273	0.00108192	0.141505	0.0124943
chr2	189469343	189469439	2272035	0	+	0.395833	(0.39,0.42]	chr2	206263	1	CDS	CDS:UTR3:EXON_MRNA	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.49145	3.9923450000000003	4.49324	0.0350273	0.00108192	0.141505	0.0124943
chr11	57331815	57331889	12394099	0	-	0.621622	(0.59,1]	chr11	958534	3	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.19	3.9922500000000003	4.7945	0.0039188	0.0031766	0.0314356	0.0279054
chr19	2071624	2071723	17421606	0	-	0.545455	(0.53,0.59]	chr19	1453173	7	UTR3	UTR3:EXON_MRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.86102	3.992015	5.12301	0.0017805	1.2852e-4	0.0172974	0.00241206
chr17	59697623	59697708	16619191	0	-	0.458824	(0.455,0.49]	chr17	1365579	2	CDS	CDS:EXON_MRNA:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	46	2	3.56037	3.99193	4.42349	5.72551e-4	3.27827e-6	0.0078026	1.08637e-4
chr19	43774447	43774533	17580627	0	-	0.790698	(0.59,1]	chr19	1479122	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000599720.5:ENST00000601549.2:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	3.66704	3.991835	4.31663	6.16458e-4	2.15624e-5	0.00822794	5.14797e-4
chr11	125614374	125614426	12194481	0	+	0.5	(0.49,0.53]	chr11	940788	2	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.26641	3.99181	5.71721	0.0190546	2.77472e-6	0.093872	9.47025e-5
chr15	55196890	55196958	15292622	0	-	0.558824	(0.53,0.59]	chr15	1207062	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000677147.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	3.62204	3.991685	4.36133	4.3021e-4	5.91026e-6	0.00620274	1.77972e-4
chr12	54239159	54239259	13342918	0	-	0.32	(0.29,0.33]	chr12	1049602	78	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	8	94	2	3.80485	3.99164	4.17843	5.80091e-8	3.58695e-8	3.86e-6	2.32046e-6
chr1	1786954	1787053	829680	0	-	0.50505	(0.49,0.53]	chr1	82929	18	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	3.31729	3.99157	4.66585	7.87963e-6	5.39247e-7	2.25573e-4	2.63471e-5
chr17	50382987	50383087	16585123	0	-	0.59	(0.53,0.59]	chr17	1363113	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	3.61089	3.9915000000000003	4.37211	5.43864e-6	4.22829e-6	1.81467e-4	1.34682e-4
chr16	1994081	1994178	15490022	0	+	0.340206	(0.33,0.36]	chr16	1226582	6	UTR3	UTR3:EXON_MRNA	SYNGR3	ENSG00000127561.15	ENST00000248121.7:ENST00000618464.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.46908	3.99143	4.51378	0.00118147	0.00114872	0.0130528	0.0127276
chr6	27893843	27893891	7105353	0	+	0.5625	(0.53,0.59]	chr6	543495	1	UTR3	UTR3:EXON_MRNA	H2BC17	ENSG00000274641.2	ENST00000616182.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.7898	3.99134	5.19288	0.0128364	9.22873e-5	0.0719798	0.0016906
chr1	112702998	112703058	1231824	0	-	0.583333	(0.53,0.59]	chr1	120338	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHOC:RP11-426L16.10	ENSG00000155366.17:ENSG00000271810.5	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000473074.1:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000534717.5:ENST00000436685.6:ENST00000471038.6:ENST00000606505.5:ENST00000605933.5:ENST00000606954.1:ENST00000607158.5:ENST00000528831.5:ENST00000484054.3:ENST00000414971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr14	81278255	81278351	14730993	0	-	0.541667	(0.53,0.59]	chr14	1154075	15	CDS	CDS:EXON_MRNA	STON2	ENSG00000140022.13	ENST00000555447.5:ENST00000649389.1:ENST00000614646.4:ENST00000555284.1:ENST00000652748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr15	74362095	74362192	15027458	0	+	0.546392	(0.53,0.59]	chr15	1181116	7	EXON_LNCRNA	EXON_LNCRNA	PPIAP46	ENSG00000260266.1	ENST00000562009.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr17	42130336	42130402	16545995	0	-	0.530303	(0.53,0.59]	chr17	1356974	1	CDS	CDS:EXON_MRNA	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000552162.5:ENST00000546881.1:ENST00000550504.5:ENST00000550406.1:ENST00000550013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr17	76039425	76039518	16686740	0	-	0.55914	(0.53,0.59]	chr17	1374119	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRP68	ENSG00000167881.15	ENST00000602720.5:ENST00000307877.7:ENST00000588643.1:ENST00000539137.5:ENST00000542536.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr19	42079602	42079702	17337621	0	+	0.58	(0.53,0.59]	chr19	1437508	10	CDS	CDS:EXON_MRNA	ZNF574	ENSG00000105732.13	ENST00000222339.7:ENST00000600245.1:ENST00000359044.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr19	45616764	45616823	17589751	0	-	0.559322	(0.53,0.59]	chr19	1480291	1	CDS	CDS:UTR3:EXON_MRNA	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000587484.5:ENST00000592482.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr19	48968225	48968322	17604708	0	-	0.57732000000000006	(0.53,0.59]	chr19	1483492	2	UTR3	UTR3:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr22	19851464	19851564	18434685	0	-	0.59	(0.53,0.59]	chr22	1571004	3	CDS	CDS:EXON_MRNA:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr3	17159500	17159597	4059115	0	-	0.57732000000000006	(0.53,0.59]	chr3	341127	25	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr3	141950615	141950715	4483240	0	-	0.55	(0.53,0.59]	chr3	372564	63	UTR3	UTR3:EXON_MRNA	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr4	887561	887659	5276468	0	-	0.581633	(0.53,0.59]	chr4	424433	19	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000618573.4:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr6	39999867	39999961	7147364	0	+	0.56383	(0.53,0.59]	chr6	551108	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP9	ENSG00000220586.2	ENST00000649703.1:ENST00000405234.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr6	138912857	138912950	7993033	0	-	0.548387	(0.53,0.59]	chr6	611094	2	CDS	CDS:UTR3:EXON_MRNA	REPS1	ENSG00000135597.19	ENST00000450536.7:ENST00000626459.2:ENST00000367663.8:ENST00000445570.5:ENST00000529597.5:ENST00000478483.6:ENST00000483468.5:ENST00000258062.9:ENST00000409812.6:ENST00000484164.6:ENST00000415951.6:ENST00000492787.6:ENST00000529423.1:ENST00000530255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr6	170660827	170660927	7556993	0	+	0.57	(0.53,0.59]	chr6	576995	204	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr7	1023623	1023721	8643901	0	-	0.571429	(0.53,0.59]	chr7	660524	2	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr7	31794053	31794153	8751471	0	-	0.54	(0.53,0.59]	chr7	667884	34	INTRON	INTRON	PDE1C	ENSG00000154678.18	ENST00000396193.5:ENST00000321453.12:ENST00000396191.6:ENST00000396184.7:ENST00000479980.1:ENST00000396182.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chrX	71107835	71107921	19106725	0	-	0.581395	(0.53,0.59]	chrX	1625343	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP5-1091N2.12:IL2RG	ENSG00000285171.1:ENSG00000147168.13	ENST00000644911.1:ENST00000645518.1:ENST00000646106.1:ENST00000646505.1:ENST00000644022.1:ENST00000644708.1:ENST00000645266.1:ENST00000647492.1:ENST00000642473.1:ENST00000374202.7:ENST00000276110.6:ENST00000374188.7:ENST00000512747.3:ENST00000482750.5:ENST00000456850.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.81839	3.99111	4.16383	0.0184435	0.00659193	0.0945306	0.0454205
chr1	150472045	150472144	468013	0	+	0.535354	(0.53,0.59]	chr1	47283	16	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr1	153534695	153534795	1297689	0	-	0.54	(0.53,0.59]	chr1	130159	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	S100A6	ENSG00000197956.10	ENST00000368720.6:ENST00000496817.5:ENST00000368719.9:ENST00000462776.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr1	156736653	156736753	488357	0	+	0.54	(0.53,0.59]	chr1	51851	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RRNAD1	ENSG00000143303.12	ENST00000368218.8:ENST00000368216.9:ENST00000476229.5:ENST00000497515.1:ENST00000481920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr12	7142947	7143026	12717306	0	+	0.56962	(0.53,0.59]	chr12	987703	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000544584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr12	54542585	54542685	12894116	0	+	0.54	(0.53,0.59]	chr12	1003236	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr12	62658983	62659063	12916248	0	+	0.5375	(0.53,0.59]	chr12	1006750	3	EXON_PSEUDO	EXON_PSEUDO	RPL32P26	ENSG00000241941.2	ENST00000480482.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr12	120522563	120522663	13581146	0	-	0.54	(0.53,0.59]	chr12	1069121	2	SS3_PROX	SS3_PROX:INTRON	COQ5	ENSG00000110871.15	ENST00000288532.11:ENST00000445328.6:ENST00000552443.5:ENST00000547943.5:ENST00000551769.1:ENST00000547736.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr13	26404081	26404177	13656214	0	+	0.552083	(0.53,0.59]	chr13	1076284	1	UTR3	UTR3:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8:ENST00000477277.5:ENST00000625988.1:ENST00000480323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr14	24440002	24440082	14535493	0	-	0.575	(0.53,0.59]	chr14	1140198	4	UTR3	UTR3:EXON_MRNA	SDR39U1	ENSG00000100445.18	ENST00000544691.6:ENST00000399395.8:ENST00000556548.5:ENST00000553930.5:ENST00000556262.5:ENST00000538105.6:ENST00000554698.5:ENST00000556707.5:ENST00000555365.5:ENST00000553546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr16	30117733	30117784	15913071	0	-	0.54902	(0.53,0.59]	chr16	1275019	1	CDS	CDS:UTR5:EXON_MRNA	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000395200.5:ENST00000395202.5:ENST00000478356.5:ENST00000395199.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr16	71850332	71850430	15733114	0	+	0.530612	(0.53,0.59]	chr16	1253343	6	CDS	CDS:EXON_MRNA:INTRON	ATXN1L:IST1	ENSG00000224470.9:ENSG00000182149.21	ENST00000683775.1:ENST00000427980.7:ENST00000568581.5:ENST00000569119.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr17	80346042	80346140	16373005	0	+	0.540816	(0.53,0.59]	chr17	1330746	15	CDS	CDS:EXON_MRNA	RNF213	ENSG00000173821.19	ENST00000508628.6:ENST00000582970.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr19	541552	541642	17188135	0	+	0.544444	(0.53,0.59]	chr19	1410717	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3:ENST00000593036.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr19	5277933	5278033	17209951	0	+	0.58	(0.53,0.59]	chr19	1415256	3	EXON_PSEUDO	EXON_PSEUDO	RPL32P34	ENSG00000239524.2	ENST00000486380.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr22	44163857	44163930	18390850	0	+	0.561644	(0.53,0.59]	chr22	1566029	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PARVB	ENSG00000188677.15	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1:ENST00000484345.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr5	150553829	150553929	6295679	0	+	0.58	(0.53,0.59]	chr5	491464	6	UTR3	UTR3:EXON_MRNA	NDST1	ENSG00000070614.15	ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr6	31280963	31281056	7114338	0	+	0.580645	(0.53,0.59]	chr6	545583	8	EXON_PSEUDO	EXON_PSEUDO	RPL3P2	ENSG00000227939.1	ENST00000413027.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr6	36923736	36923835	7135747	0	+	0.575758	(0.53,0.59]	chr6	549805	4	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr6	43516896	43516985	7708051	0	-	0.573034	(0.53,0.59]	chr6	591453	2	UTR5	UTR5:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503972.5:ENST00000460547.6:ENST00000455768.6:ENST00000416380.6:ENST00000460903.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr6	43671761	43671861	7708945	0	-	0.57	(0.53,0.59]	chr6	591715	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPS18A	ENSG00000096080.12	ENST00000372133.8:ENST00000372116.5:ENST00000427312.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr6	149632758	149632837	8018076	0	-	0.544304	(0.53,0.59]	chr6	612641	1	CDS	CDS:EXON_MRNA:INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr7	99012070	99012162	8420444	0	+	0.532609	(0.53,0.59]	chr7	641457	1	CDS	CDS:EXON_MRNA	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr9	128982964	128983028	10482582	0	+	0.5625	(0.53,0.59]	chr9	791065	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.82407	3.99106	4.15805	0.0179666	0.00680952	0.0918323	0.0468196
chr3	50606953	50607047	4179539	0	-	0.553191	(0.53,0.59]	chr3	352073	6	UTR3	UTR3:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.5766	3.990785	5.40497	8.34608e-4	2.83308e-5	0.00978328	7.12614e-4
chr2	60735258	60735350	2685799	0	-	0.445652	(0.42,0.455]	chr2	239742	5	EXON_PSEUDO	EXON_PSEUDO	ATP1B3P1	ENSG00000271707.1	ENST00000605365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	2.36247	3.989805	5.61714	0.0462889	4.98624e-6	0.176878	1.54467e-4
chrX	55181994	55182083	19085028	0	-	0.438202	(0.42,0.455]	chrX	1623834	1	UTR5	UTR5:EXON_MRNA	MTRNR2L10	ENSG00000256045.3	ENST00000545075.3	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.36247	3.989805	5.61714	0.0462889	4.98624e-6	0.176878	1.54467e-4
chr22	19508529	19508610	18295661	0	+	0.506173	(0.49,0.53]	chr22	1552793	1	CDS	CDS:UTR3:EXON_MRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.51671	3.989725	5.46274	0.00768763	1.13094e-5	0.050396	3.3464e-4
chr7	100091435	100091520	8425361	0	+	0.494118	(0.49,0.53]	chr7	642471	1	CDS	CDS:UTR3:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	3.96757	3.9896399999999996	4.01171	6.21316e-5	4.88513e-5	0.00134149	0.00100497
chr22	19964126	19964226	18296475	0	+	0.58	(0.53,0.59]	chr22	1553006	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	COMT:MIR4761	ENSG00000093010.15:ENSG00000284031.1	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000678240.1:ENST00000677675.1:ENST00000585066.1:ENST00000493893.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	5	107	2	3.95685	3.989405	4.02196	2.90242e-6	1.79284e-7	1.08567e-4	9.26652e-6
chr13	22696114	22696206	13928527	0	-	0.413043	(0.39,0.42]	chr13	1092772	2	EXON_PSEUDO	EXON_PSEUDO	FTH1P7	ENSG00000232187.1	ENST00000450676.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	27	2	3.82973	3.9892950000000003	4.14886	0.00415881	1.3728e-4	0.0325842	0.00232973
chr15	80979218	80979318	15405876	0	-	0.41	(0.39,0.42]	chr15	1218139	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MESD	ENSG00000117899.11	ENST00000619987.4:ENST00000561312.5:ENST00000422879.3:ENST00000559537.1:ENST00000261758.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	3.82973	3.9892950000000003	4.14886	0.00415881	1.3728e-4	0.0325842	0.00232973
chr7	92606011	92606110	8924899	0	-	0.333333	(0.33,0.36]	chr7	681136	12	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	3.64677	3.989255	4.33174	2.94381e-6	1.6535e-7	9.91257e-5	9.74137e-6
chr8	30578661	30578747	9780930	0	-	0.534884	(0.53,0.59]	chr8	739602	5	UTR3	UTR3:EXON_MRNA	GTF2E2	ENSG00000197265.9	ENST00000355904.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.5393	3.988965	4.43863	0.00254763	6.46017e-4	0.0233955	0.00799743
chr15	78880511	78880579	15042472	0	+	0.323529	(0.29,0.33]	chr15	1183420	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5:ENST00000331268.9:ENST00000557961.5:ENST00000559930.5:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000558522.5:ENST00000559619.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000558539.5:ENST00000559244.5:ENST00000559751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	47	2	2.7724	3.98884	5.20528	6.68288e-5	2.18753e-5	0.00130254	5.75389e-4
chr19	44992633	44992715	17350334	0	+	0.621951	(0.59,1]	chr19	1439402	2	CDS	CDS:UTR3:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000589347.1:ENST00000586915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.8606	3.98866	4.11672	0.0222273	2.2997e-4	0.105595	0.00352524
chr4	118815542	118815634	5618783	0	-	0.532609	(0.53,0.59]	chr4	447692	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5:ENST00000503683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	3.66915	3.988455	4.30776	0.00407289	2.76654e-6	0.0324137	9.47025e-5
chr5	181242231	181242331	7009006	0	-	0.5	(0.49,0.53]	chr5	537339	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1:ENST00000503170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	445	2	3.40072	3.9880199999999997	4.57532	1.4808e-9	1e-12	1.48969e-7	2.46312e-10
chr12	62755683	62755775	12916256	0	+	0.521739	(0.49,0.53]	chr12	1006751	6	EXON_PSEUDO	EXON_PSEUDO	GAPDHP44	ENSG00000213352.3	ENST00000513513.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	48	2	3.94177	3.987645	4.03352	0.0104929	1.50496e-6	0.063428	5.64695e-5
chr1	65596447	65596520	253265	0	+	0.383562	(0.36,0.39]	chr1	28821	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	3.92423	3.98749	4.05075	4.00467e-6	1.62965e-8	1.41152e-4	1.18105e-6
chr11	46776254	46776318	12383828	0	-	0.421875	(0.42,0.455]	chr11	956094	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.17397	3.987305	4.80064	0.0031821	3.0479e-4	0.0267094	0.00472028
chr13	39023051	39023130	13976333	0	-	0.443038	(0.42,0.455]	chr13	1096583	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000496138.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	3.17397	3.987305	4.80064	0.0031821	3.0479e-4	0.0267094	0.00472028
chr20	41092471	41092529	17789842	0	+	0.448276	(0.42,0.455]	chr20	1503464	1	CDS	CDS:UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.17397	3.987305	4.80064	0.0031821	3.0479e-4	0.0267094	0.00472028
chr4	75657625	75657702	5473007	0	-	0.428571	(0.42,0.455]	chr4	438410	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000507947.5:ENST00000676493.1:ENST00000676761.1:ENST00000677278.1:ENST00000503660.5:ENST00000678670.1:ENST00000677733.1:ENST00000676926.1:ENST00000502654.5:ENST00000509100.6:ENST00000515457.6:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.17397	3.987305	4.80064	0.0031821	3.0479e-4	0.0267094	0.00472028
chr1	205619014	205619073	1461613	0	-	0.508475	(0.49,0.53]	chr1	147406	2	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.23006	3.9872199999999998	4.74438	0.00253719	5.91752e-4	0.0233955	0.00743488
chr2	210433602	210433701	3145328	0	-	0.323232	(0.29,0.33]	chr2	277990	25	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.97941	3.9869700000000003	3.99453	8.03892e-5	5.81801e-5	0.00167226	0.00116944
chr21	14963422	14963521	18167895	0	-	0.323232	(0.29,0.33]	chr21	1542659	23	UTR3	UTR3:EXON_MRNA:INTRON	AF127936.9:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	38	2	2.37238	3.9869000000000003	5.60142	0.0014346	2.77244e-6	0.015422	9.47025e-5
chr7	103310394	103310475	8441110	0	+	0.382716	(0.36,0.39]	chr7	645034	2	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	3.24025	3.9868550000000003	4.73346	3.2963e-4	2.74161e-4	0.00504024	0.00406677
chr11	67254346	67254418	11994923	0	+	0.513889	(0.49,0.53]	chr11	922649	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000530342.2:ENST00000524657.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.69037	3.9868449999999998	4.28332	0.0226513	0.00338762	0.10505	0.0288632
chr14	20474527	20474575	14171354	0	+	0.520833	(0.49,0.53]	chr14	1109143	1	CDS_START	CDS_START:CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000553418.5:ENST00000361505.10:ENST00000557229.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.69037	3.9868449999999998	4.28332	0.0226513	0.00338762	0.10505	0.0288632
chr17	77215965	77216062	16362228	0	+	0.515464	(0.49,0.53]	chr17	1329013	21	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.69037	3.9868449999999998	4.28332	0.0226513	0.00338762	0.10505	0.0288632
chr2	24821108	24821205	1682634	0	+	0.505155	(0.49,0.53]	chr2	164503	19	UTR3	UTR3:EXON_MRNA	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000380834.7:ENST00000260662.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.69037	3.9868449999999998	4.28332	0.0226513	0.00338762	0.10505	0.0288632
chr8	27822318	27822403	9771264	0	-	0.376471	(0.36,0.39]	chr8	738668	1	CDS	CDS:EXON_MRNA:INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.76778	3.98667	5.20556	0.00365703	4.46552e-5	0.0307238	9.34801e-4
chr1	31919562	31919628	921307	0	-	0.530303	(0.53,0.59]	chr1	96945	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-84A19.4:PTP4A2:RP4-534N18.5	ENSG00000269967.1:ENSG00000184007.22:ENSG00000288678.1	ENST00000602889.1:ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000679970.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	29	2	3.02054	3.986435	4.95233	0.00577011	3.02711e-4	0.0426551	0.00439897
chr6	116278708	116278801	7908900	0	-	0.537634	(0.53,0.59]	chr6	605659	2	CDS	CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.02054	3.986435	4.95233	0.00577011	3.02711e-4	0.0426551	0.00439897
chr10	50306752	50306849	11486519	0	-	0.298969	(0.29,0.33]	chr10	876691	13	UTR3	UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.85216	3.986415	4.12067	2.40819e-5	1.03145e-5	5.6648e-4	3.09366e-4
chr6	52282109	52282175	7736779	0	-	0.5	(0.49,0.53]	chr6	593751	2	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.02891	3.98627	4.94363	8.23332e-4	2.3417e-4	0.0102121	0.00355764
chr1	32102501	32102573	126366	0	+	0.527778	(0.49,0.53]	chr1	15550	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000336294.10:ENST00000441402.5:ENST00000468135.5:ENST00000476968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr12	6858423	6858520	12714808	0	+	0.525773	(0.49,0.53]	chr12	987069	1	CDS	CDS:EXON_MRNA:INTRON	USP5	ENSG00000111667.14	ENST00000389231.9:ENST00000229268.13:ENST00000542087.1:ENST00000535080.1:ENST00000537267.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr12	55820295	55820395	12896462	0	+	0.5	(0.49,0.53]	chr12	1003627	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ORMDL2	ENSG00000123353.10	ENST00000243045.10:ENST00000552672.5:ENST00000550836.1:ENST00000548974.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr14	74891096	74891167	14402311	0	+	0.492958	(0.49,0.53]	chr14	1125567	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DLST	ENSG00000119689.15	ENST00000556460.5:ENST00000555492.5:ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000556582.5:ENST00000555071.5:ENST00000555190.5:ENST00000555459.5:ENST00000555089.5:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr16	25258827	25258924	15605226	0	+	0.525773	(0.49,0.53]	chr16	1237503	10	EXON_LNCRNA	EXON_LNCRNA	ZKSCAN2-DT	ENSG00000274925.1	ENST00000612792.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr16	67952183	67952279	15991222	0	-	0.5	(0.49,0.53]	chr16	1283603	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000576616.5:ENST00000570802.5:ENST00000537830.6:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr17	7586691	7586717	16105784	0	+	0.5	(0.49,0.53]	chr17	1297024	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000585188.5:ENST00000578267.5:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000580834.5:ENST00000423172.6:ENST00000572719.5:ENST00000584479.5:ENST00000576066.5:ENST00000579445.5:ENST00000581886.5:ENST00000570458.5:ENST00000585217.5:ENST00000576272.5:ENST00000581380.1:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr17	21183667	21183738	16165977	0	+	0.492958	(0.49,0.53]	chr17	1304079	1	CDS	CDS:UTR3:EXON_MRNA	DHRS7B	ENSG00000109016.17	ENST00000395511.7:ENST00000578426.5:ENST00000579303.5:ENST00000346603.4:ENST00000583388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr17	75004457	75004553	16352852	0	+	0.520833	(0.49,0.53]	chr17	1326854	5	UTR3	UTR3:EXON_MRNA	CDR2L	ENSG00000109089.7	ENST00000337231.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr2	191835732	191835827	3089794	0	-	0.494737	(0.49,0.53]	chr2	273158	16	UTR3	UTR3:EXON_MRNA	CAVIN2	ENSG00000168497.5	ENST00000304141.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr5	157567123	157567222	6935326	0	-	0.494949	(0.49,0.53]	chr5	531205	23	INTRON	INTRON	ADAM19	ENSG00000135074.16	ENST00000517951.5:ENST00000257527.9:ENST00000517905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.73494	3.986265	4.23759	0.0189345	0.00436474	0.0934721	0.0335517
chr5	74715509	74715599	6036620	0	+	0.4	(0.39,0.42]	chr5	473477	1	CDS	CDS:EXON_MRNA	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000261416.12:ENST00000504459.5:ENST00000513336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	3.19588	3.98612	4.77636	0.00321212	2.28159e-7	0.0280721	1.13101e-5
chr1	151265465	151265537	471375	0	+	0.555556	(0.53,0.59]	chr1	48098	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5:ENST00000445776.1:ENST00000491857.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.63871	3.98611	5.33351	0.00148857	4.35359e-5	0.0159153	0.00091744700000000005
chr9	133362024	133362120	10880431	0	-	0.46875	(0.455,0.49]	chr9	825839	7	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.52734	3.9860800000000003	5.44482	0.00792433	1.36044e-5	0.0523592	3.54469e-4
chr6	26199658	26199748	7101572	0	+	0.555556	(0.53,0.59]	chr6	542850	1	CDS	CDS:EXON_MRNA	H2BC7	ENSG00000277224.2	ENST00000356530.5	protein_coding	protein_coding	protein_coding	protein_coding	8	164	2	3.67842	3.986065	4.29371	5.49252e-7	2.62946e-9	2.40221e-5	2.6571e-7
chr12	49269614	49269687	12865680	0	+	0.534247	(0.53,0.59]	chr12	999052	3	CDS	CDS:UTR3:EXON_MRNA	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	226	2	3.23461	3.98599	4.73737	5.94435e-7	3.71772e-11	2.84227e-5	5.64228e-9
chr12	57530414	57530505	13356839	0	-	0.56044	(0.53,0.59]	chr12	1052762	5	UTR3	UTR3:EXON_MRNA	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.80806	3.985945	4.16383	0.00659193	1.65022e-4	0.0454205	0.00269147
chr6	30744101	30744201	7659372	0	-	0.58	(0.53,0.59]	chr6	584325	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IER3	ENSG00000137331.12	ENST00000376377.2:ENST00000259874.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.80806	3.985945	4.16383	0.00659193	1.65022e-4	0.0454205	0.00269147
chr6	75237926	75237988	7800167	0	-	0.467742	(0.455,0.49]	chr6	597618	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	3.87233	3.985765	4.0992	1.08465e-4	2.73975e-5	0.00193256	6.95757e-4
chr16	21655626	21655723	15585606	0	+	0.340206	(0.33,0.36]	chr16	1235205	3	UTR3	UTR3:EXON_MRNA	METTL9	ENSG00000197006.14	ENST00000396014.8:ENST00000358154.8:ENST00000615720.4:ENST00000564733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	143	2	3.96326	3.985695	4.00813	4.70313e-8	5.21436e-10	3.23676e-6	5.89309e-8
chr19	14401385	14401474	17242446	0	+	0.561798	(0.53,0.59]	chr19	1421826	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6:ENST00000586849.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	3.92573	3.985505	4.04528	8.62301e-5	4.28524e-5	0.00160749	9.98851e-4
chr6	170658728	170658827	7556972	0	+	0.575758	(0.53,0.59]	chr6	576995	183	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	3.93648	3.985505	4.03453	8.06385e-5	4.6e-5	0.00167444	9.56296e-4
chr2	187465775	187465871	3070157	0	-	0.40625	(0.39,0.42]	chr2	271827	17	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.38186	3.9854450000000003	5.58903	0.00601449	5.14263e-6	0.0434483	1.58468e-4
chr20	44906438	44906537	17799151	0	+	0.333333	(0.33,0.36]	chr20	1504696	1	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.60198	3.98538	4.36878	0.0021194	6.01238e-4	0.0198008	0.00811676
chr1	193082185	193082242	631136	0	+	0.350877	(0.33,0.36]	chr1	64135	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.00573	3.9853	4.96487	0.00630535	9.26851e-5	0.044701	0.00185187
chr19	44990849	44990945	17350311	0	+	0.53125	(0.53,0.59]	chr19	1439387	1	CDS	CDS:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000589347.1:ENST00000586975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	3.8061	3.984965	4.16383	0.00659193	8.37944e-6	0.0454205	2.38248e-4
chr18	59338759	59338856	17142427	0	-	0.43299	(0.42,0.455]	chr18	1407623	1	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	3.41565	3.9848049999999997	4.55396	1.18603e-6	1.1523e-6	4.9483e-5	4.61657e-5
chr17	80831821	80831921	16376737	0	+	0.46	(0.455,0.49]	chr17	1331104	82	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.9967	3.9846399999999997	4.97258	0.00650423	1.84876e-4	0.0454205	0.00296795
chr10	131973792	131973867	11750503	0	-	0.506667	(0.49,0.53]	chr10	896516	1	CDS	CDS:EXON_MRNA	BNIP3	ENSG00000176171.11	ENST00000368636.8:ENST00000540159.3:ENST00000633835.1:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.54118	3.98454	4.4279	0.00196987	4.50577e-5	0.0193972	9.4221e-4
chr10	101783390	101783413	11665765	0	-	0.434783	(0.42,0.455]	chr10	889335	1	UTR5	UTR5:EXON_MRNA	NPM3	ENSG00000107833.10	ENST00000370110.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr11	118502891	118502989	12158944	0	+	0.428571	(0.42,0.455]	chr11	937104	6	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr12	54536943	54536998	12894056	0	+	0.436364	(0.42,0.455]	chr12	1003223	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr15	63591119	63591217	14973972	0	+	0.428571	(0.42,0.455]	chr15	1176970	4	UTR3	UTR3:EXON_MRNA	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5:ENST00000560202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr19	15248016	15248113	17485025	0	-	0.453608	(0.42,0.455]	chr19	1465329	11	UTR3	UTR3:EXON_MRNA:INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr20	38013141	38013237	17962680	0	-	0.4375	(0.42,0.455]	chr20	1522288	18	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1:ENST00000487362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr6	117707503	117707601	7353887	0	+	0.438776	(0.42,0.455]	chr6	565154	6	UTR3	UTR3:EXON_MRNA	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr7	133895598	133895666	8543838	0	+	0.441176	(0.42,0.455]	chr7	651968	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5:ENST00000472020.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.90921	3.984375	4.05954	0.0121657	0.00617886	0.0701019	0.0439741
chr2	75660920	75661019	1894618	0	+	0.414141	(0.39,0.42]	chr2	179770	58	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL19:RP11-342K6.1	ENSG00000115364.14:ENSG00000270696.1	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1:ENST00000604845.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	24	2	3.3298	3.9843149999999996	4.63883	0.00165391	5.68159e-4	0.0163614	0.0077844
chr22	17655661	17655711	18290418	0	+	0.42	(0.39,0.42]	chr22	1552105	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.3298	3.9843149999999996	4.63883	0.00165391	5.68159e-4	0.0163614	0.0077844
chr1	182876829	182876903	595072	0	+	0.337838	(0.33,0.36]	chr1	61631	1	CDS	CDS:EXON_MRNA	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.3227	3.984115	4.64553	0.00222616	6.69086e-4	0.0211992	0.00820018
chr17	77215188	77215285	16362220	0	+	0.350515	(0.33,0.36]	chr17	1329013	13	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.3227	3.984115	4.64553	0.00222616	6.69086e-4	0.0211992	0.00820018
chr20	49068768	49068822	17811578	0	+	0.333333	(0.33,0.36]	chr20	1506502	2	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.3227	3.984115	4.64553	0.00222616	6.69086e-4	0.0211992	0.00820018
chr21	17789269	17789367	18174085	0	-	0.357143	(0.33,0.36]	chr21	1543109	4	UTR3	UTR3:EXON_MRNA:INTRON	C21orf91-OT1:C21orf91	ENSG00000240770.5:ENSG00000154642.11	ENST00000430815.5:ENST00000430401.5:ENST00000439392.1:ENST00000284881.9	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	20	2	3.3227	3.984115	4.64553	0.00222616	6.69086e-4	0.0211992	0.00820018
chr1	116404415	116404444	423962	0	+	0.482759	(0.455,0.49]	chr1	41855	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	3.0141	3.984095	4.95409	9.3076e-4	5.5347e-8	0.0111917	3.37102e-6
chr11	66277202	66277299	11989576	0	+	0.587629	(0.53,0.59]	chr11	921606	11	UTR3	UTR3:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.29875	3.984055	4.66936	0.00191422	0.00103174	0.018324	0.0121443
chr14	102028072	102028141	14495647	0	+	0.536232	(0.53,0.59]	chr14	1133174	3	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000554854.1:ENST00000645697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.29875	3.984055	4.66936	0.00191422	0.00103174	0.018324	0.0121443
chr16	21837151	21837248	15889967	0	-	0.536082	(0.53,0.59]	chr16	1271456	25	CDS	CDS:EXON_MRNA	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.29875	3.984055	4.66936	0.00191422	0.00103174	0.018324	0.0121443
chr6	32186812	32186901	7664830	0	-	0.539326	(0.53,0.59]	chr6	586186	1	CDS	CDS:EXON_MRNA	PBX2	ENSG00000204304.12	ENST00000375050.6:ENST00000495300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.29875	3.984055	4.66936	0.00191422	0.00103174	0.018324	0.0121443
chr1	99748572	99748668	1197750	0	-	0.4375	(0.42,0.455]	chr1	116912	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000370176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	3.52659	3.984045	4.4415	6.87022e-4	2.94164e-6	0.00876781	9.91141e-5
chr1	96447623	96447722	366403	0	+	0.50505	(0.49,0.53]	chr1	35865	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	16	247	2	3.50489	3.983715	4.46254	8.92248e-9	6.00537e-11	7.03479e-7	9.47402e-9
chr8	17995412	17995512	9215104	0	+	0.42	(0.39,0.42]	chr8	704144	14	INTRON	INTRON	PCM1	ENSG00000078674.18	ENST00000325083.12:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.93996	3.983415	4.02687	0.00841622	4.35816e-5	0.054565	0.00091744700000000005
chr11	34113715	34113802	11905613	0	+	0.517241	(0.49,0.53]	chr11	909624	1	CDS	CDS:EXON_MRNA	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000529523.5:ENST00000527971.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.11892	3.98318	4.84744	0.00398244	3.70203e-4	0.0322851	0.00515475
chr1	236484037	236484136	769259	0	+	0.535354	(0.53,0.59]	chr1	77526	15	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	4	91	2	3.87884	3.983175	4.08751	1.11478e-4	1.04565e-7	0.00213212	5.7906e-6
chr22	37874369	37874446	18364645	0	+	0.584416	(0.53,0.59]	chr22	1562195	1	CDS	CDS:EXON_MRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.43852	3.98309	5.52766	0.00373745	1.38993e-5	0.0303359	3.94563e-4
chr6	44249583	44249674	7161572	0	+	0.340659	(0.33,0.36]	chr6	553836	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.93997	3.9830000000000005	4.02603	0.0071776	9.37165e-5	0.048188	0.00186979
chr14	20476601	20476698	14171378	0	+	0.556701	(0.53,0.59]	chr14	1109155	1	UTR3	UTR3:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	3.69065	3.9829550000000005	4.27526	3.04331e-4	1.03921e-5	0.00472028	2.85526e-4
chr20	49946194	49946254	17814575	0	+	0.433333	(0.42,0.455]	chr20	1506953	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.71365	3.9828349999999997	4.25202	2.63375e-4	1.07036e-5	0.00427022	2.92107e-4
chr3	133587946	133588046	3750845	0	+	0.39	(0.36,0.39]	chr3	321178	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000503932.5:ENST00000508481.5:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.0992	3.982615	4.86603	5.86576e-4	1.68962e-4	0.00742331	0.00297945
chr6	31639078	31639130	7661361	0	-	0.576923	(0.53,0.59]	chr6	584798	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000422948.5:ENST00000464126.1:ENST00000464869.5:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	3.86809	3.982425	4.09676	1.18973e-4	3.14727e-5	0.00207755	7.72298e-4
chr17	42323259	42323354	16547526	0	-	0.494737	(0.49,0.53]	chr17	1357280	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000677270.1:ENST00000678659.1:ENST00000471989.5:ENST00000498330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	3.73494	3.9824	4.22986	0.0189345	1.25249e-5	0.0934721	3.30689e-4
chr5	61159068	61159165	6609665	0	-	0.28866000000000003	[0,0.29]	chr5	510906	15	UTR3	UTR3:EXON_MRNA	SMIM15	ENSG00000188725.8	ENST00000339020.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.39061	3.982385	4.57416	0.00134497	6.75561e-4	0.0140037	0.00873562
chr5	127552905	127553004	6205038	0	+	0.252525	[0,0.29]	chr5	483456	11	UTR3	UTR3:EXON_MRNA:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.39061	3.982385	4.57416	0.00134497	6.75561e-4	0.0140037	0.00873562
chr6	13621593	13621689	7605057	0	-	0.25	[0,0.29]	chr6	580001	2	UTR3	UTR3:EXON_MRNA	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.39061	3.982385	4.57416	0.00134497	6.75561e-4	0.0140037	0.00873562
chrX	71294226	71294301	18730826	0	+	0.56	(0.53,0.59]	chrX	1598418	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	3.78083	3.98228	4.18373	1.85867e-5	9.87441e-6	4.56627e-4	2.99e-4
chr2	218276025	218276079	3186650	0	-	0.537037	(0.53,0.59]	chr2	279904	1	CDS	CDS:UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	3.44509	3.982265	4.51944	8.31409e-5	2.00484e-6	0.00171126	7.16652e-5
chr3	167684307	167684389	4564229	0	-	0.402439	(0.39,0.42]	chr3	377992	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.93737	3.98212	4.02687	7.80292e-5	4.35816e-5	0.00162998	0.00091744700000000005
chr10	17403507	17403563	10939030	0	+	0.428571	(0.42,0.455]	chr10	833026	1	EXON_SMALL	EXON_SMALL:INTRON	ST8SIA6-AS1:Y_RNA	ENSG00000204832.10:ENSG00000251803.1	ENST00000451190.3:ENST00000657045.1:ENST00000457649.6:ENST00000377597.6:ENST00000451225.2:ENST00000515994.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	1	26	2	2.7523	3.982085	5.21187	0.0153283	5.5797e-5	0.0828908	0.00112719
chr11	57740098	57740145	11952435	0	+	0.425532	(0.42,0.455]	chr11	914744	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000378312.8:ENST00000530114.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.7523	3.982085	5.21187	0.0153283	5.5797e-5	0.0828908	0.00112719
chr22	29767498	29767587	18338402	0	+	0.640449	(0.59,1]	chr22	1558462	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UQCR10	ENSG00000184076.13	ENST00000330029.6:ENST00000401406.3	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.5215	3.98193	5.44236	0.032241	2.02004e-4	0.135671	0.00317801
chrX	135051394	135051487	19246092	0	-	0.612903	(0.59,1]	chrX	1634621	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8A	ENSG00000203950.7	ENST00000370775.3:ENST00000518153.1:ENST00000520964.1:ENST00000522309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	3.82456	3.981535	4.13851	3.02854e-4	5.66622e-5	0.00472028	0.00114182
chr2	38325605	38325705	2603006	0	-	0.48	(0.455,0.49]	chr2	234465	62	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.35214	3.981345	5.61055	0.0455621	3.16146e-6	0.168044	1.16228e-4
chr19	36142911	36142966	17308762	0	+	0.472727	(0.455,0.49]	chr19	1432231	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000591041.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000592354.5:ENST00000586963.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	50	2	3.24913	3.98109	4.71305	0.00239443	3.85068e-7	0.0225356	1.76303e-5
chr20	56398966	56399063	17834465	0	+	0.402062	(0.39,0.42]	chr20	1507907	1	CDS	CDS:UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000415828.5:ENST00000217109.9:ENST00000452950.1:ENST00000493039.5:ENST00000490539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	3.76141	3.9808500000000002	4.20029	2.14058e-4	1.46608e-5	0.00359478	3.77398e-4
chr2	121339168	121339267	2860460	0	-	0.484848	(0.455,0.49]	chr2	255378	15	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.89854	3.9806800000000004	5.06282	4.22484e-4	1.16789e-4	0.00613535	0.0020505
chr6	63211978	63212073	7204410	0	+	0.473684	(0.455,0.49]	chr6	556454	2	UTR3	UTR3:EXON_MRNA	FKBP1C	ENSG00000198225.5	ENST00000370659.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.20069	3.980585	4.76048	0.00285821	3.99985e-4	0.0245841	0.00588767
chr8	6732560	6732650	9180516	0	+	0.466667	(0.455,0.49]	chr8	701031	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.20069	3.980585	4.76048	0.00285821	3.99985e-4	0.0245841	0.00588767
chr3	49360110	49360208	4174072	0	-	0.336735	(0.33,0.36]	chr3	350894	11	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	8	113	2	3.51724	3.980525	4.44381	2.5465e-6	3.0883e-10	9.68313e-5	3.70768e-8
chr1	159918304	159918403	1326670	0	-	0.555556	(0.53,0.59]	chr1	135579	3	UTR3	UTR3:EXON_MRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	3.889	3.98048	4.07196	4.69357e-6	1.26681e-6	1.625e-4	4.89488e-5
chr11	65996739	65996837	12423521	0	-	0.387755	(0.36,0.39]	chr11	964316	3	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.58637	3.9802999999999997	4.37423	5.84377e-4	4.42053e-6	0.00793559	1.39924e-4
chr6	109158871	109158924	7325681	0	+	0.377358	(0.36,0.39]	chr6	562966	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP57L1	ENSG00000183137.15	ENST00000521522.5:ENST00000517392.6:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5:ENST00000359793.7:ENST00000523174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	3.58637	3.9802999999999997	4.37423	5.84377e-4	4.42053e-6	0.00793559	1.39924e-4
chr14	21352372	21352472	14521132	0	-	0.47	(0.455,0.49]	chr14	1137303	10	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.45014	3.9802850000000003	5.51043	0.00397453	9.08728e-6	0.0322851	2.53877e-4
chr2	215349179	215349279	2377287	0	+	0.43	(0.42,0.455]	chr2	213582	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000426233.1:ENST00000479093.5:ENST00000442048.3:ENST00000478734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.91373	3.980265	5.0468	0.00892357	1.33918e-4	0.0567495	0.00229039
chr19	12939952	12940052	17238354	0	+	0.48	(0.455,0.49]	chr19	1421050	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	CALR:MIR6515	ENSG00000179218.15:ENSG00000274417.1	ENST00000587486.6:ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000590325.1:ENST00000588454.6:ENST00000619843.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	9	125	2	3.57113	3.98015	4.38917	3.90809e-6	2.31025e-8	1.38004e-4	1.60017e-6
chr3	38008088	38008163	4121230	0	-	0.546667	(0.53,0.59]	chr3	344557	2	CDS	CDS:EXON_MRNA	PLCD1	ENSG00000187091.14	ENST00000334661.5:ENST00000461445.5:ENST00000417185.6:ENST00000463876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.82407	3.97988	4.13569	0.0179666	2.50241e-5	0.0918323	5.82427e-4
chr16	75627894	75627993	16039066	0	-	0.454545	(0.42,0.455]	chr16	1288281	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000569298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.22933	3.979845	5.73036	0.0102262	2.37045e-6	0.062872	8.28831e-5
chr11	126264190	126264289	12645147	0	-	0.444444	(0.42,0.455]	chr11	981830	1	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000532268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	3.31161	3.979785	4.64796	0.00186138	6.51077e-7	0.018635	2.77961e-5
chr1	155318168	155318229	483652	0	+	0.557377	(0.53,0.59]	chr1	50786	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5:ENST00000492887.5:ENST00000492244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.00674	3.9795350000000003	4.95233	8.9408e-4	3.02711e-4	0.01086	0.00439897
chr1	165768681	165768751	1341764	0	-	0.528571	(0.49,0.53]	chr1	137640	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4:ENST00000628579.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	3.83319	3.979045	4.1249	1.34601e-4	2.4461e-5	0.00249552	5.72214e-4
chr1	2307848	2307947	7384	0	+	0.444444	(0.42,0.455]	chr1	1667	12	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.31161	3.978925	4.64624	0.00186138	8.75333e-4	0.018635	0.0101169
chr22	40792598	40792676	18517591	0	-	0.435897	(0.42,0.455]	chr22	1580895	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5:ENST00000458600.5:ENST00000443810.5:ENST00000412879.5:ENST00000426396.5:ENST00000434193.5:ENST00000449676.5:ENST00000434185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.31161	3.978925	4.64624	0.00186138	8.75333e-4	0.018635	0.0101169
chr11	5270067	5270156	12240783	0	-	0.47191	(0.455,0.49]	chr11	946121	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	92	2	3.719	3.97889	4.23878	1.42274e-5	2.18316e-8	4.02509e-4	1.51908e-6
chr15	42264146	42264203	15239388	0	-	0.385965	(0.36,0.39]	chr15	1200269	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5:ENST00000561578.5:ENST00000566474.5:ENST00000307216.10:ENST00000568432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.02397	3.97889	4.93381	0.00674398	1.90009e-4	0.0461258	0.00302753
chr7	106091904	106091939	8977620	0	-	0.371429	(0.36,0.39]	chr7	687016	1	CDS	CDS:UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1:ENST00000460770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	2.75447	3.97889	5.20331	3.28568e-4	2.53222e-5	0.00467693	6.51851e-4
chr1	145994280	145994358	1270258	0	-	0.538462	(0.53,0.59]	chr1	125534	1	CDS	CDS:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1:ENST00000425134.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	287	2	2.81107	3.978825	5.14658	9.39784e-7	5.1058e-12	3.79703e-5	1.04045e-9
chr2	128138716	128138784	2059963	0	+	0.411765	(0.39,0.42]	chr2	193248	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.49701	3.9788249999999996	5.46064	0.0339607	1.15573e-5	0.141431	3.09736e-4
chr11	60898540	60898626	12402778	0	-	0.511628	(0.49,0.53]	chr11	959898	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1:ENST00000539960.1:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.13501	3.9785899999999996	5.82217	0.0287874	1.36598e-6	0.128869	5.18684e-5
chr4	99072641	99072711	5548226	0	-	0.357143	(0.33,0.36]	chr4	443148	2	CDS	CDS:UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.97606	3.978555	4.98105	0.00871774	1.32493e-4	0.0558165	0.00227943
chrX	68070999	68071095	19098338	0	-	0.447917	(0.42,0.455]	chrX	1624707	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	OPHN1:PGK1P1	ENSG00000079482.14:ENSG00000228328.2	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1:ENST00000426382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_transcript:processed_pseudogene	1	25	2	3.27707	3.97844	4.67981	0.00207325	5.38444e-4	0.0194849	0.00744072
chr4	99950170	99950225	5551604	0	-	0.509091	(0.49,0.53]	chr4	443727	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	51	2	2.24777	3.978405	5.70904	0.00238252	2.30382e-6	0.0217	8.86852e-5
chr12	69601511	69601570	12943580	0	+	0.20339	[0,0.29]	chr12	1009026	2	UTR3	UTR3:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000550653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.61628	3.978345	5.34041	0.0101434	1.38223e-5	0.0626311	3.58914e-4
chr17	63764793	63764847	16634863	0	-	0.37037	(0.36,0.39]	chr17	1367614	2	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.36872	3.9780949999999997	4.58747	6.55819e-4	1.31092e-4	0.00860229	0.00226268
chr12	51093952	51094051	13330689	0	-	0.373737	(0.36,0.39]	chr12	1046883	4	UTR3	UTR3:EXON_MRNA	TFCP2	ENSG00000135457.10	ENST00000257915.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.53094	3.977985	4.42503	0.0305588	0.00133228	0.130016	0.0144372
chr7	103535315	103535399	8963611	0	-	0.488095	(0.455,0.49]	chr7	686154	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1:ENST00000681315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	3.73589	3.97776	4.21963	2.30579e-4	3.43063e-7	0.00382267	1.6072e-5
chr11	62573830	62573842	12409159	0	-	0.75	(0.59,1]	chr11	960979	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	3.61023	3.97755	4.34487	0.0123678	7.25496e-4	0.0705839	0.00869086
chr7	108574051	108574151	8457671	0	+	0.34	(0.33,0.36]	chr7	646360	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DNAJB9	ENSG00000128590.5	ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.72365	3.97755	4.23145	3.19155e-4	1.158e-5	0.00491578	3.09867e-4
chr1	149701292	149701392	1286128	0	-	0.58	(0.53,0.59]	chr1	127742	11	INTRON	INTRON	PDE4DIPP7	ENSG00000234232.7	ENST00000617878.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	141	2	3.65624	3.9775400000000003	4.29884	6.55192e-7	1.69107e-8	2.79409e-5	1.3329e-6
chr12	112151885	112151970	13094574	0	+	0.517647	(0.49,0.53]	chr12	1021553	2	CDS	CDS:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.52637	3.977135	4.4279	0.00196987	6.68602e-4	0.0193972	0.00820018
chr9	109057256	109057322	10788152	0	-	0.469697	(0.455,0.49]	chr9	816840	2	CDS	CDS:UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.50904	3.9769300000000003	5.44482	0.0310515	1.36044e-5	0.131262	3.54469e-4
chr12	98651280	98651380	13037095	0	+	0.34	(0.33,0.36]	chr12	1015049	12	INTRON	INTRON	APAF1	ENSG00000120868.14	ENST00000551964.6:ENST00000359972.6:ENST00000333991.5:ENST00000357310.5:ENST00000552268.5:ENST00000550527.5:ENST00000547045.5:ENST00000549007.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.82538	3.97689	4.1284	0.00407303	1.40963e-4	0.0324137	0.002378
chr16	74491000	74491071	16031403	0	-	0.549296	(0.53,0.59]	chr16	1287351	1	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.99511	3.97668	4.95825	9.46531e-4	2.87508e-4	0.010681	0.00457439
chr19	18436031	18436103	17499329	0	-	0.541667	(0.53,0.59]	chr19	1468109	1	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582770.6:ENST00000578963.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.99511	3.97668	4.95825	9.46531e-4	2.87508e-4	0.010681	0.00457439
chr22	21628088	21628170	18441857	0	-	0.426829	(0.42,0.455]	chr22	1572447	1	UTR3	UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.99666	3.97663	4.9566	0.00104775	2.10615e-4	0.0123035	0.00327655
chr1	182382925	182383024	1401205	0	-	0.373737	(0.36,0.39]	chr1	141690	50	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	381	2	3.78148	3.976585	4.17169	2.65179e-11	1.23079e-12	4.59276e-9	2.70745e-10
chr6	32115903	32115968	7664393	0	-	0.630769	(0.59,1]	chr6	585969	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	41	2	2.84944	3.97645	5.10346	0.0128238	8.40506e-4	0.0719798	0.00981548
chr15	48332328	48332406	14921473	0	+	0.782051	(0.59,1]	chr15	1173058	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	3.65509	3.97626	4.29743	5.95213e-4	2.81132e-5	0.00746384	7.10133e-4
chr19	40763586	40763675	17330932	0	+	0.483146	(0.455,0.49]	chr19	1436158	1	CDS	CDS:EXON_MRNA	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000243563.8:ENST00000601393.1:ENST00000596860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	96	2	3.46544	3.97615	4.48686	2.55359e-6	3.23772e-8	8.83735e-5	2.34166e-6
chr2	74462524	74462620	2742893	0	-	0.604167	(0.59,1]	chr2	244411	13	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	3.96462	3.976065	3.98751	0.0301044	7.67763e-6	0.129773	2.20857e-4
chr1	236568995	236569059	1568381	0	-	0.328125	(0.29,0.33]	chr1	157032	1	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.92065	3.9759450000000003	5.03124	0.0117842	9.06368e-5	0.0686664	0.00167558
chr1	36339913	36340010	940153	0	-	0.721649	(0.59,1]	chr1	98983	4	UTR3	UTR3:EXON_MRNA	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.71566	3.97548	4.2353	0.0487443	0.0165254	0.175495	0.0873033
chr1	202808205	202808305	1452559	0	-	0.8	(0.59,1]	chr1	145932	1	CDS_START	CDS_START:CDS:EXON_MRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000648958.1:ENST00000650368.1:ENST00000649200.1:ENST00000648354.1:ENST00000650493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	20	2	3.71566	3.97548	4.2353	0.0487443	0.0165254	0.175495	0.0873033
chr16	265820	265920	15481108	0	+	0.68	(0.59,1]	chr16	1224309	9	UTR3	UTR3:EXON_MRNA:INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000301678.7:ENST00000600536.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	20	2	3.71566	3.97548	4.2353	0.0487443	0.0165254	0.175495	0.0873033
chr16	21835303	21835400	15889948	0	-	0.639175	(0.59,1]	chr16	1271456	6	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.71566	3.97548	4.2353	0.0487443	0.0165254	0.175495	0.0873033
chr2	190180666	190180759	2277127	0	+	0.709677	(0.59,1]	chr2	206630	3	UTR5	UTR5:EXON_MRNA:INTRON	C2orf88	ENSG00000187699.10	ENST00000490033.5:ENST00000450357.5:ENST00000396974.2:ENST00000409545.2:ENST00000409870.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	20	2	3.71566	3.97548	4.2353	0.0487443	0.0165254	0.175495	0.0873033
chr20	24963912	24963967	17931252	0	-	0.618182	(0.59,1]	chr20	1517949	1	CDS	CDS:EXON_MRNA	APMAP	ENSG00000101474.12	ENST00000217456.3:ENST00000451442.5	protein_coding	protein_coding	protein_coding	protein_coding	0	20	2	3.71566	3.97548	4.2353	0.0487443	0.0165254	0.175495	0.0873033
chr14	20316423	20316523	14517255	0	-	0.45	(0.42,0.455]	chr14	1136480	1	CDS_START	CDS_START:CDS:EXON_MRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	3.4231	3.97538	4.52766	0.00112541	1.58778e-6	0.0128481	5.89925e-5
chr6	158585303	158585364	7521615	0	+	0.393443	(0.39,0.42]	chr6	573948	1	CDS	CDS:EXON_MRNA	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.70591	3.9748	5.24369	0.0185716	4.15285e-5	0.0932453	8.8376e-4
chr7	129832980	129833077	9061547	0	-	0.391753	(0.39,0.42]	chr7	691964	24	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.70591	3.9748	5.24369	0.0185716	4.15285e-5	0.0932453	8.8376e-4
chr12	64740605	64740688	13379009	0	-	0.337349	(0.33,0.36]	chr12	1054237	1	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000540196.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.78095	3.974465	5.16798	0.00388614	4.80331e-5	0.0322851	9.91058e-4
chr20	34075873	34075956	17762617	0	+	0.698795	(0.59,1]	chr20	1500129	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.61074	3.97437	5.338	0.025486	3.196e-4	0.117089	0.00457916
chr7	140453922	140454021	9107989	0	-	0.424242	(0.42,0.455]	chr7	695057	10	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.51988	3.974285	5.42869	0.00300574	1.60756e-5	0.0267032	4.07445e-4
chr9	137184191	137184291	10893349	0	-	0.65	(0.59,1]	chr9	828453	4	SS3_PROX	SS3_PROX:INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.28861	3.974145	4.65968	0.00413632	0.0028753	0.0324998	0.0256141
chr13	97992891	97992952	13858967	0	+	0.442623	(0.42,0.455]	chr13	1086649	1	CDS	CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.19078	3.97403	4.75728	0.00310864	5.3817e-4	0.0274272	0.00686676
chr22	49963599	49963694	18414501	0	+	0.515789	(0.49,0.53]	chr22	1567879	6	UTR3	UTR3:EXON_MRNA	PIM3	ENSG00000198355.5	ENST00000360612.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.60116	3.97403	5.3469	0.0056515	2.75121e-5	0.0422191	6.30607e-4
chr8	86558509	86558609	9457709	0	+	0.38	(0.36,0.39]	chr8	720297	2	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	3.08191	3.9739700000000004	4.86603	1.68962e-4	4.1566e-5	0.00297945	8.8376e-4
chr12	57935964	57936063	13358809	0	-	0.515152	(0.49,0.53]	chr12	1053291	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GIHCG	ENSG00000257698.2	ENST00000659090.1:ENST00000656617.1:ENST00000655884.1:ENST00000653595.1:ENST00000668073.1:ENST00000664635.1:ENST00000667438.1:ENST00000546580.2:ENST00000551421.1:ENST00000547492.1:ENST00000655210.1:ENST00000553102.1:ENST00000660297.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	59	2	3.58926	3.9739050000000002	4.35855	3.32125e-5	5.06834e-6	7.33555e-4	1.7169e-4
chr19	19130155	19130231	17502164	0	-	0.671053	(0.59,1]	chr19	1468669	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000591031.6:ENST00000590216.6:ENST00000592369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	156	2	3.37546	3.9737999999999998	4.57214	2.25785e-4	1.46654e-7	0.00375451	7.80073e-6
chr2	110661667	110661754	2838167	0	-	0.505747	(0.49,0.53]	chr2	253353	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000477481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	59	2	1.89161	3.973475	6.05534	0.00594773	2.57847e-7	0.0430241	1.25763e-5
chrX	49174694	49174784	18693791	0	+	0.466667	(0.455,0.49]	chrX	1594681	1	UTR3	UTR3:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6	protein_coding	protein_coding	protein_coding	protein_coding	9	149	2	2.99822	3.973465	4.94871	1.25499e-5	2.10156e-11	3.63974e-4	3.38659e-9
chr17	32494563	32494660	16499668	0	-	0.57732000000000006	(0.53,0.59]	chr17	1350073	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577576.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.39416	3.9734499999999997	4.55274	0.00167999	0.00126006	0.0164993	0.013837
chr21	46168568	46168658	18280707	0	-	0.588889	(0.53,0.59]	chr21	1550799	3	CDS	CDS:UTR5:EXON_MRNA	SPATC1L	ENSG00000160284.15	ENST00000330205.10:ENST00000291672.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.39416	3.9734499999999997	4.55274	0.00167999	0.00126006	0.0164993	0.013837
chr16	30064159	30064248	15628360	0	+	0.561798	(0.53,0.59]	chr16	1239752	2	UTR3	UTR3:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562302.1:ENST00000562168.5:ENST00000569545.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.90978	3.973415	5.03705	0.00857883	0.00020199200000000001	0.0552386	0.00317801
chr1	99728492	99728566	1197543	0	-	0.351351	(0.33,0.36]	chr1	116878	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.60198	3.97341	4.34484	6.01238e-4	5.33265e-6	0.00811676	1.63127e-4
chr18	59329605	59329704	17142329	0	-	0.343434	(0.33,0.36]	chr18	1407602	19	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.60198	3.97341	4.34484	6.01238e-4	5.33265e-6	0.00811676	1.63127e-4
chr13	27251557	27251654	13657819	0	+	0.649485	(0.59,1]	chr13	1076384	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000473558.5:ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	147	2	3.68764	3.97337	4.2591	4.42534e-5	1.20565e-6	0.00102453	4.68197e-5
chr1	207360167	207360267	686667	0	+	0.36	(0.33,0.36]	chr1	69543	6	UTR3	UTR3:EXON_MRNA:INTRON	CD55	ENSG00000196352.16	ENST00000645323.1:ENST00000367064.9:ENST00000314754.12:ENST00000476590.1:ENST00000618707.2:ENST00000635614.2:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr14	87950658	87950748	14743123	0	-	0.355556	(0.33,0.36]	chr14	1154587	1	CDS	CDS:UTR3:EXON_MRNA	GALC	ENSG00000054983.17	ENST00000555000.5:ENST00000261304.7:ENST00000544807.6:ENST00000393569.6:ENST00000393568.8:ENST00000557316.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr17	59607269	59607367	16294792	0	+	0.346939	(0.33,0.36]	chr17	1321597	2	UTR3	UTR3:EXON_MRNA	DHX40	ENSG00000108406.10	ENST00000251241.9:ENST00000577549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr3	9385452	9385548	3297509	0	+	0.34375	(0.33,0.36]	chr3	289403	9	UTR3	UTR3:EXON_MRNA	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr3	128080985	128081073	4440177	0	-	0.352273	(0.33,0.36]	chr3	368835	3	UTR3	UTR3:EXON_MRNA:INTRON	RUVBL1	ENSG00000175792.12	ENST00000585057.5:ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000582176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr5	96985148	96985218	6118422	0	+	0.342857	(0.33,0.36]	chr5	478782	2	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr6	118908781	118908879	7358721	0	+	0.336735	(0.33,0.36]	chr6	565268	13	UTR3	UTR3:EXON_MRNA	ASF1A	ENSG00000111875.8	ENST00000229595.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.81832	3.97336	4.1284	0.0135793	0.00407303	0.0745701	0.0324137
chr3	186572094	186572172	3957001	0	+	0.410256	(0.39,0.42]	chr3	333549	1	CDS	CDS:EXON_MRNA	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.05461	3.9732849999999997	4.89196	8.55091e-4	2.62166e-4	0.0105173	0.0039188
chr19	18031818	18031911	17256841	0	+	0.494624	(0.49,0.53]	chr19	1424994	13	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	29	2	3.8233	3.9729650000000003	4.12263	0.00591451	1.44192e-4	0.0427941	0.00242438
chr5	72193865	72193963	6027733	0	+	0.510204	(0.49,0.53]	chr5	472560	1	CDS	CDS:UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12:ENST00000513526.6:ENST00000511641.2:ENST00000504492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.8233	3.9729650000000003	4.12263	0.00591451	1.44192e-4	0.0427941	0.00242438
chr2	26191349	26191442	2565639	0	-	0.526882	(0.49,0.53]	chr2	230527	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	3.38647	3.97288	4.55929	0.00116196	1.15525e-4	0.0130851	0.00204405
chr1	149851309	149851406	464858	0	+	0.618557	(0.59,1]	chr1	46804	2	CDS	CDS:EXON_MRNA	H2AC19	ENSG00000272196.2	ENST00000607355.2	protein_coding	protein_coding	protein_coding	protein_coding	15	481	2	3.7307	3.9728149999999998	4.21493	7.33377e-8	6.83013e-9	4.74838e-6	5.57015e-7
chr18	49491531	49491571	17119627	0	-	0.5	(0.49,0.53]	chr18	1405597	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000581091.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	199	2	3.55317	3.97272	4.39227	3.67891e-7	4.18593e-11	1.91579e-5	6.28939e-9
chr19	49015571	49015650	17368345	0	+	0.556962	(0.53,0.59]	chr19	1442334	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1:ENST00000595002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.01641	3.972625	5.92884	0.0108917	1.11987e-6	0.0645168	4.4003e-5
chr17	81701600	81701682	16381122	0	+	0.5	(0.49,0.53]	chr17	1331933	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000678658.1:ENST00000677159.1:ENST00000573949.1:ENST00000678607.1:ENST00000575078.6:ENST00000573320.2:ENST00000677466.1:ENST00000679340.1:ENST00000570652.2:ENST00000677663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	3.35841	3.9725800000000002	4.58675	1.37225e-4	1.05095e-6	0.00253405	4.17035e-5
chr14	58239875	58239974	14651311	0	-	0.59596	(0.59,1]	chr14	1147490	878	INTRON	INTRON	ARMH4	ENSG00000139971.15	ENST00000554218.1	protein_coding	processed_transcript	protein_coding	processed_transcript	746	23356	2	3.61218	3.9725650000000003	4.33295	5.93917e-10	2.42995e-12	6.58218e-8	5.41098e-10
chr1	43765694	43765794	167318	0	+	0.49	(0.455,0.49]	chr1	21540	221	INTRON	INTRON	RP11-7O11.7:ST3GAL3	ENSG00000284989.1:ENSG00000126091.21	ENST00000645057.1:ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr12	56239781	56239880	13349586	0	-	0.474747	(0.455,0.49]	chr12	1050887	21	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD52	ENSG00000139645.11	ENST00000267116.8:ENST00000548241.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr12	74168980	74169080	13413876	0	-	0.48	(0.455,0.49]	chr12	1056173	107	INTRON	INTRON	LINC02882	ENSG00000251138.7	ENST00000663261.1:ENST00000665907.1:ENST00000669556.1:ENST00000653134.1:ENST00000549905.5:ENST00000662107.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr15	76292618	76292700	15382228	0	-	0.47561	(0.455,0.49]	chr15	1216381	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1:ENST00000560309.5:ENST00000561092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr16	23067846	23067945	15892452	0	-	0.464646	(0.455,0.49]	chr16	1271856	66	UTR3	UTR3:EXON_MRNA	USP31	ENSG00000103404.15	ENST00000219689.12	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr18	3457408	3457494	16730870	0	+	0.488372	(0.455,0.49]	chr18	1380204	1	CDS	CDS:UTR3:EXON_MRNA	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000550958.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000549253.5:ENST00000405385.7:ENST00000407501.6:ENST00000546979.5:ENST00000343820.10:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000549468.5:ENST00000551333.1:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr18	51048685	51048772	16874973	0	+	0.45977	(0.455,0.49]	chr18	1389965	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-729L2.2:SMAD4	ENSG00000267699.2:ENSG00000141646.14	ENST00000590722.2:ENST00000588860.5:ENST00000398417.6:ENST00000589076.5:ENST00000342988.8:ENST00000590061.1:ENST00000592911.5:ENST00000589941.1:ENST00000588745.5:ENST00000592186.5:ENST00000589706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr19	48634249	48634348	17602936	0	-	0.464646	(0.455,0.49]	chr19	1482943	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DBP	ENSG00000105516.11	ENST00000222122.10:ENST00000599385.5:ENST00000594723.1:ENST00000593500.1:ENST00000601104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr2	29757393	29757493	2579785	0	-	0.49	(0.455,0.49]	chr2	232288	393	INTRON	INTRON	ALK	ENSG00000171094.18	ENST00000389048.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr2	231146297	231146356	2423943	0	+	0.474576	(0.455,0.49]	chr2	218368	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000677229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr20	38011801	38011896	17962666	0	-	0.473684	(0.455,0.49]	chr20	1522288	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1:ENST00000487362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr3	119480111	119480172	3689639	0	+	0.47541	(0.455,0.49]	chr3	315365	2	CDS	CDS:UTR3:EXON_MRNA	POGLUT1	ENSG00000163389.12	ENST00000295588.9:ENST00000486607.5:ENST00000497447.5:ENST00000476573.5:ENST00000647766.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr5	177306614	177306697	6406838	0	+	0.46988	(0.455,0.49]	chr5	498066	1	UTR3	UTR3:EXON_MRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000504594.5:ENST00000503216.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr6	21000226	21000299	7080281	0	+	0.479452	(0.455,0.49]	chr6	541543	1	CDS	CDS:EXON_MRNA	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr7	143876161	143876248	9116980	0	-	0.471264	(0.455,0.49]	chr7	696362	3	CDS	CDS:EXON_MRNA:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chrX	18324906	18324977	18975496	0	-	0.464789	(0.455,0.49]	chrX	1615709	1	CDS	CDS:EXON_MRNA	SCML2	ENSG00000102098.19	ENST00000251900.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.92463	3.9725150000000005	4.0204	0.0113417	0.00736097	0.0665375	0.0490627
chr19	18434912	18435012	17499310	0	-	0.58	(0.53,0.59]	chr19	1468095	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582287.6:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	3.75615	3.97234	4.18853	2.16536e-4	5.25589e-7	0.00361336	2.31205e-5
chr5	53646342	53646405	5969279	0	+	0.460317	(0.455,0.49]	chr5	467979	2	CDS	CDS:UTR3:EXON_MRNA	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1:ENST00000509443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.96925	3.97225	4.97525	0.00698725	1.38474e-4	0.0473262	0.00254294
chrX	119456607	119456658	18841496	0	+	0.470588	(0.455,0.49]	chrX	1605546	2	EXON_SMALL	EXON_SMALL	RNY3P16	ENSG00000252147.1	ENST00000516338.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	25	2	2.96925	3.97225	4.97525	0.00698725	1.38474e-4	0.0473262	0.00254294
chr17	47658583	47658660	16251715	0	+	0.402597	(0.39,0.42]	chr17	1316658	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	3.93737	3.9721849999999996	4.007	7.80292e-5	1.77795e-6	0.00162998	6.48503e-5
chr14	67649651	67649750	14683052	0	-	0.434343	(0.42,0.455]	chr14	1149578	27	UTR3	UTR3:EXON_MRNA	VTI1B	ENSG00000100568.11	ENST00000554659.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr16	84779175	84779268	15791038	0	+	0.44086	(0.42,0.455]	chr16	1256730	2	UTR3	UTR3:EXON_MRNA	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000569925.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr17	7174960	7175057	16428447	0	-	0.453608	(0.42,0.455]	chr17	1339087	1	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr2	15287127	15287183	2527327	0	-	0.446429	(0.42,0.455]	chr2	227339	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr2	53866088	53866188	2664101	0	-	0.44	(0.42,0.455]	chr2	238114	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr3	122425588	122425688	4411550	0	-	0.43	(0.42,0.455]	chr3	366116	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr7	39957016	39957116	8243108	0	+	0.44	(0.42,0.455]	chr7	628204	42	INTRON	INTRON	CDK13	ENSG00000065883.16	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000611390.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chrX	153350846	153350945	18914097	0	+	0.454545	(0.42,0.455]	chrX	1610850	30	UTR3	UTR3:EXON_MRNA	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3:ENST00000647705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.70273	3.9720299999999997	4.24133	0.0215502	0.00326918	0.102904	0.0282494
chr3	184171839	184171938	3948122	0	+	0.464646	(0.455,0.49]	chr3	331990	12	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.78188	3.972015	5.16215	7.46087e-4	5.04348e-5	0.00892618	0.00113788
chr17	62382015	62382104	16308230	0	+	0.404494	(0.39,0.42]	chr17	1322679	1	INTRON	INTRON	EFCAB3	ENSG00000172421.10	ENST00000636041.1:ENST00000450662.7:ENST00000305286.8:ENST00000520404.5:ENST00000518576.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.18155	3.9719949999999997	5.76244	0.0283931	1.61725e-6	0.127654	5.98677e-5
chr7	128758870	128758953	8521740	0	+	0.385542	(0.36,0.39]	chr7	650177	1	CDS	CDS:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	21	313	2	3.6772	3.971865	4.26653	1.57336e-8	1e-12	1.25241e-6	2.25522e-10
chrX	105122286	105122386	18800577	0	+	0.32	(0.29,0.33]	chrX	1602499	3180	INTRON	INTRON	IL1RAPL2	ENSG00000189108.13	ENST00000372582.6	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	2.61288	3.9718600000000004	5.33084	0.00138819	6.10056e-12	0.0149724	1.12138e-9
chr12	122146652	122146751	13123198	0	+	0.464646	(0.455,0.49]	chr12	1024850	50	UTR3	UTR3:EXON_MRNA	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.30384	3.97181	4.63978	0.00184955	6.94032e-4	0.0178046	0.00876781
chr9	100022041	100022133	10772937	0	-	0.413043	(0.39,0.42]	chr9	815463	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	2.33095	3.97164	5.61233	7.09987e-4	1.29902e-10	0.00895243	1.70396e-8
chrX	154435980	154436069	18917920	0	+	0.595506	(0.59,1]	chrX	1611929	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.80637	3.9715800000000003	5.13679	0.00274489	9.28022e-4	0.0238522	0.0111748
chr13	28722581	28722679	13944886	0	-	0.438776	(0.42,0.455]	chr13	1094499	3	EXON_PSEUDO	EXON_PSEUDO	CYP51A1P2	ENSG00000233588.1	ENST00000419457.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	3.8515	3.9715249999999997	4.09155	0.0119089	2.98142e-5	0.0686664	6.7355e-4
chr15	80979397	80979477	15405878	0	-	0.525	(0.49,0.53]	chr15	1218140	2	CDS	CDS:EXON_MRNA:INTRON	MESD	ENSG00000117899.11	ENST00000619987.4:ENST00000561312.5:ENST00000422879.3:ENST00000559537.1:ENST00000261758.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.42954	3.97133	4.51312	0.00156636	0.00105489	0.0156889	0.0123035
chr17	41913773	41913873	16544241	0	-	0.5	(0.49,0.53]	chr17	1356598	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000590770.5:ENST00000590735.1:ENST00000592970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.42954	3.97133	4.51312	0.00156636	0.00105489	0.0156889	0.0123035
chr1	30872323	30872421	915892	0	-	0.5	(0.49,0.53]	chr1	95914	30	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	3.48945	3.9711550000000004	4.45286	9.31926e-6	5.18628e-8	2.86425e-4	3.19006e-6
chr2	15276933	15277017	2527224	0	-	0.404762	(0.39,0.42]	chr2	227333	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.0503	3.97113	4.89196	0.00570576	2.62166e-4	0.0424438	0.0039188
chr2	157862377	157862476	2953291	0	-	0.40404	(0.39,0.42]	chr2	262194	18	INTRON	INTRON	ACVR1	ENSG00000115170.16	ENST00000682025.1:ENST00000683487.1:ENST00000682300.1:ENST00000263640.7:ENST00000683441.1:ENST00000684595.1:ENST00000434821.7:ENST00000683404.1:ENST00000683426.1:ENST00000684348.1:ENST00000683820.1:ENST00000672582.1:ENST00000673324.1:ENST00000424669.6:ENST00000539637.6:ENST00000440523.5:ENST00000413751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.0503	3.97113	4.89196	0.00570576	2.62166e-4	0.0424438	0.0039188
chr17	40402979	40403054	16538898	0	-	0.386667	(0.36,0.39]	chr17	1354621	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.37824	3.97106	4.56388	1.61189e-4	1.11774e-6	0.00287786	4.4003e-5
chr1	17023972	17024023	873045	0	-	0.509804	(0.49,0.53]	chr1	89443	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.99849	3.9710599999999996	4.94363	0.00630123	2.3417e-4	0.0445415	0.00355764
chr16	74456648	74456701	16031035	0	-	0.490566	(0.49,0.53]	chr16	1287259	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.99849	3.9710599999999996	4.94363	0.00630123	2.3417e-4	0.0445415	0.00355764
chr22	36265443	36265541	18360624	0	+	0.540816	(0.53,0.59]	chr22	1561192	4	CDS	CDS:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000397278.8:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.38347	3.971035	4.5586	0.00161229	0.00132446	0.0169168	0.0138834
chr1	28003237	28003337	911575	0	-	0.45	(0.42,0.455]	chr1	95346	28	INTRON	INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000495923.5:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr11	5665197	5665294	12244789	0	-	0.43299	(0.42,0.455]	chr11	946299	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CTD-2643I7.5:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000642298.1:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr11	56690636	56690723	11949741	0	+	0.448276	(0.42,0.455]	chr11	914274	3	EXON_PSEUDO	EXON_PSEUDO	TMEM230P2	ENSG00000238041.3	ENST00000530434.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr12	122478205	122478292	13590527	0	-	0.448276	(0.42,0.455]	chr12	1070324	1	CDS	CDS:EXON_MRNA	ZCCHC8	ENSG00000033030.15	ENST00000672018.1:ENST00000633063.3:ENST00000543897.5:ENST00000536306.5:ENST00000538116.5:ENST00000542892.2:ENST00000544054.5:ENST00000536663.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr14	23939688	23939786	14532454	0	-	0.428571	(0.42,0.455]	chr14	1139459	16	EXON_LNCRNA	EXON_LNCRNA	DHRS4-AS1	ENSG00000215256.4	ENST00000656761.1:ENST00000556379.1:ENST00000555045.2:ENST00000660207.1:ENST00000667602.1:ENST00000666884.1:ENST00000654375.1:ENST00000656462.1:ENST00000671411.1:ENST00000671346.1:ENST00000671464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr15	43805007	43805093	15250128	0	-	0.44186	(0.42,0.455]	chr15	1202267	7	UTR3	UTR3:EXON_MRNA	MFAP1	ENSG00000140259.7	ENST00000267812.4:ENST00000484386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr2	130174913	130175000	2874075	0	-	0.448276	(0.42,0.455]	chr2	257149	1	CDS	CDS:EXON_MRNA:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1:ENST00000441135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr3	113784764	113784833	3675857	0	+	0.434783	(0.42,0.455]	chr3	314441	2	CDS	CDS:UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5:ENST00000496747.5:ENST00000475322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr5	32385507	32385578	6519204	0	-	0.43662	(0.42,0.455]	chr5	504971	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr6	67889240	67889339	7784153	0	-	0.444444	(0.42,0.455]	chr6	596229	24	EXON_LNCRNA	EXON_LNCRNA	RP11-301G19.1	ENSG00000227706.4	ENST00000662821.1:ENST00000660755.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr7	27748524	27748624	8186773	0	+	0.43	(0.42,0.455]	chr7	624838	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	TAX1BP1	ENSG00000106052.14	ENST00000418691.5:ENST00000543117.5:ENST00000422800.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000490455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chrX	15701987	15702085	18591469	0	+	0.428571	(0.42,0.455]	chrX	1588116	39	INTRON	INTRON	CA5BP1:CA5B	ENSG00000186312.10:ENSG00000169239.13	ENST00000380334.6:ENST00000380333.5:ENST00000435806.2:ENST00000498004.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chrX	119583126	119583155	18841632	0	+	0.448276	(0.42,0.455]	chrX	1605600	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	UBE2A	ENSG00000077721.16	ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000628549.1:ENST00000371569.6:ENST00000628734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.8515	3.97065	4.0898	0.0119089	0.00698074	0.0686664	0.0473262
chr8	47935731	47935815	9817182	0	-	0.488095	(0.455,0.49]	chr8	742873	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.06914	3.9705	4.87186	6.6649e-4	2.33781e-4	0.00820018	0.00385436
chr1	154349614	154349714	480564	0	+	0.42	(0.39,0.42]	chr1	49951	6	UTR3	UTR3:EXON_MRNA	ATP8B2	ENSG00000143515.19	ENST00000368489.6:ENST00000672630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.62131	3.9704999999999995	5.31969	0.00609677	2.68682e-5	0.0439136	6.19143e-4
chr11	17077167	17077246	12295052	0	-	0.481013	(0.455,0.49]	chr11	950307	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1:ENST00000527571.1:ENST00000534329.1:ENST00000528074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	390	2	3.545	3.970455	4.39591	1.73705e-9	1e-12	1.85019e-7	2.25522e-10
chr8	70597950	70598011	9881526	0	-	0.360656	(0.36,0.39]	chr8	746955	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	3.02397	3.9703850000000003	4.9168	0.00674398	6.76244e-8	0.0461258	4.00219e-6
chr5	33162178	33162267	5926660	0	+	0.573034	(0.53,0.59]	chr5	464307	1	EXON_PSEUDO	EXON_PSEUDO	RP11-36C20.1	ENSG00000240376.1	ENST00000467270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	62	2	3.61856	3.97034	4.32212	0.0303021	1.84692e-7	0.129773	9.51079e-6
chrX	24054955	24054968	18616447	0	+	0.461538	(0.455,0.49]	chrX	1589779	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	264	2	3.35107	3.97022	4.58937	3.20898e-7	1e-12	1.69947e-5	2.25522e-10
chr4	17624579	17624677	4734392	0	+	0.397959	(0.39,0.42]	chr4	392802	9	UTR3	UTR3:EXON_MRNA:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	89	2	3.70471	3.97016	4.23561	1.16386e-5	9.86714e-8	3.43116e-4	5.5198e-6
chr6	41935208	41935299	7701862	0	-	0.494505	(0.49,0.53]	chr6	590673	4	UTR3	UTR3:EXON_MRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.11783	3.9699999999999998	5.82217	0.0142725	1.36598e-6	0.0780078	5.18684e-5
chr12	113389497	113389594	13101749	0	+	0.525773	(0.49,0.53]	chr12	1022448	10	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	9	153	2	3.72963	3.969975	4.21032	7.87932e-8	4.33643e-9	5.05771e-6	3.77376e-7
chr11	60902772	60902872	12402833	0	-	0.62	(0.59,1]	chr11	959937	1	CDS_START	CDS_START:CDS:EXON_MRNA	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000541371.5:ENST00000546152.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.11647	3.9698599999999997	4.82325	0.00535979	0.002381	0.0406564	0.0216895
chrX	124326174	124326258	19199598	0	-	0.428571	(0.42,0.455]	chrX	1632694	1	EXON_PSEUDO	EXON_PSEUDO	RP5-1052M9.1	ENSG00000226532.1	ENST00000412004.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	71	2	2.83395	3.9698	5.10565	6.25227e-4	1.5934e-8	0.00830005	1.15646e-6
chr7	128086937	128086994	8519321	0	+	0.631579	(0.59,1]	chr7	649809	1	CDS	CDS:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	133	2	2.9981	3.96977	4.94144	3.68402e-4	4.87881e-7	0.00553314	2.16171e-5
chr17	59663841	59663917	16295260	0	+	0.460526	(0.455,0.49]	chr17	1321653	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	89	2	3.81698	3.96967	4.12236	7.1534e-6	6.13033e-8	2.29129e-4	3.67043e-6
chr17	39153677	39153766	16533724	0	-	0.505618	(0.49,0.53]	chr17	1353746	6	INTRON	INTRON	PLXDC1	ENSG00000161381.14	ENST00000579190.1	protein_coding	protein_coding	protein_coding	protein_coding	78	1365	2	2.77485	3.96957	5.16429	6.15399e-8	1e-12	4.07417e-6	2.25522e-10
chr1	156318867	156318942	1314127	0	-	0.48	(0.455,0.49]	chr1	133433	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	90	2	3.76882	3.96944	4.17006	1.00626e-5	4.03133e-8	3.03291e-4	2.56372e-6
chr7	135644894	135644956	8553306	0	+	0.419355	(0.39,0.42]	chr7	652899	1	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5:ENST00000490439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.55844	3.96938	5.38032	0.0263695	9.82886e-6	0.117164	2.98194e-4
chr1	161213398	161213475	499192	0	+	0.467532	(0.455,0.49]	chr1	54041	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6:ENST00000492153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.57525	3.9691599999999996	4.36307	0.00218641	5.24878e-4	0.0208941	0.00677371
chr1	203722477	203722547	669699	0	+	0.457143	(0.455,0.49]	chr1	67484	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.57525	3.9691599999999996	4.36307	0.00218641	5.24878e-4	0.0208941	0.00677371
chr10	73146275	73146361	11569361	0	-	0.488372	(0.455,0.49]	chr10	880576	1	CDS	CDS:UTR3:EXON_MRNA	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.57525	3.9691599999999996	4.36307	0.00218641	5.24878e-4	0.0208941	0.00677371
chr10	95643134	95643206	11633254	0	-	0.458333	(0.455,0.49]	chr10	886070	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000483788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.57525	3.9691599999999996	4.36307	0.00218641	5.24878e-4	0.0208941	0.00677371
chrX	129814657	129814726	19219749	0	-	0.478261	(0.455,0.49]	chrX	1633226	1	CDS	CDS:EXON_MRNA:INTRON	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.57525	3.9691599999999996	4.36307	0.00218641	5.24878e-4	0.0208941	0.00677371
chr1	121116865	121116963	1259535	0	-	0.673469	(0.59,1]	chr1	123389	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	H2BP1	ENSG00000223345.3	ENST00000430394.1:ENST00000412169.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	3.30708	3.96907	4.63106	0.00537945	0.00252451	0.0406564	0.0226777
chr15	74414645	74414745	15374475	0	-	0.65	(0.59,1]	chr15	1215165	2	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.30708	3.96907	4.63106	0.00537945	0.00252451	0.0406564	0.0226777
chr16	58158084	58158174	15965605	0	-	0.477778	(0.455,0.49]	chr16	1280931	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	3.56037	3.96865	4.37693	5.72551e-4	4.5365e-6	0.0078026	1.42727e-4
chr13	99539501	99539557	13865411	0	+	0.410714	(0.39,0.42]	chr13	1087176	2	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.16612	3.96859	4.77106	4.03393e-4	3.03764e-4	0.00550292	0.00472028
chr1	55039990	55040044	203593	0	+	0.685185	(0.59,1]	chr1	26109	2	CDS	CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	131	2	3.14833	3.96854	4.78875	1.7186e-4	1.30092e-6	0.00302214	5.00075e-5
chr19	1242532	1242609	17192022	0	+	0.662338	(0.59,1]	chr19	1411826	2	CDS	CDS:EXON_MRNA	ATP5F1D	ENSG00000099624.8	ENST00000395633.5:ENST00000215375.7:ENST00000592624.1:ENST00000590265.5:ENST00000588538.5:ENST00000591660.5:ENST00000591249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.77109	3.968425	5.16576	0.00331425	6.55716e-4	0.0285314	0.0080931
chr7	75422704	75422804	8858980	0	-	0.66	(0.59,1]	chr7	676969	13	CDS	CDS:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.77109	3.968425	5.16576	0.00331425	6.55716e-4	0.0285314	0.0080931
chrX	107650742	107650836	18813957	0	+	0.37234	(0.36,0.39]	chrX	1603307	1	UTR3	UTR3:EXON_MRNA:INTRON	PRPS1	ENSG00000147224.13	ENST00000643795.2:ENST00000372435.10:ENST00000644642.1:ENST00000675875.1:ENST00000372428.9:ENST00000675263.1:ENST00000676322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	3.66725	3.968205	4.26916	9.09682e-6	3.16233e-6	2.53877e-4	1.16228e-4
chr14	100734148	100734240	14489602	0	+	0.684783	(0.59,1]	chr14	1132123	1	CDS	CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000341267.9:ENST00000331224.10	protein_coding	protein_coding	protein_coding	protein_coding	8	262	2	3.565	3.9680299999999997	4.37106	2.15186e-6	6.89019e-8	8.40005e-5	4.06041e-6
chr2	200815428	200815517	2309306	0	+	0.438202	(0.42,0.455]	chr2	208924	2	CDS	CDS:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000450637.5:ENST00000410110.6:ENST00000452206.5:ENST00000409600.6:ENST00000464483.1:ENST00000409226.5:ENST00000452790.6:ENST00000447069.5:ENST00000419090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	3.94929	3.9677800000000003	3.98627	2.78395e-6	1.84475e-7	9.49154e-5	1.06914e-5
chr1	228097590	228097652	744026	0	+	0.596774	(0.59,1]	chr1	75093	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ARF1:MIR3620	ENSG00000143761.16:ENSG00000284163.1	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000482962.5:ENST00000497165.5:ENST00000584469.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	2	82	2	3.86139	3.96764	4.07389	2.54973e-4	7.9402e-5	0.00417441	0.00150391
chr1	201876530	201876629	661509	0	+	0.50505	(0.49,0.53]	chr1	66335	4	UTR3	UTR3:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.04107	3.9675599999999998	4.89405	0.00533879	2.57983e-4	0.0392268	0.00419998
chr8	30352549	30352646	9253458	0	+	0.494845	(0.49,0.53]	chr8	708964	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	49	2	3.42954	3.9675000000000002	4.50546	0.00105489	1.89933e-6	0.0123035	6.87959e-5
chr14	23097832	23097906	14175747	0	+	0.5	(0.49,0.53]	chr14	1110553	2	CDS	CDS:EXON_MRNA	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.25514	3.96743	4.67972	0.00227467	6.94757e-4	0.0209546	0.00876781
chr15	41742992	41743082	14888690	0	+	0.5	(0.49,0.53]	chr15	1169743	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	MGA	ENSG00000174197.17	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.12:ENST00000564190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.25514	3.96743	4.67972	0.00227467	6.94757e-4	0.0209546	0.00876781
chr17	1659840	1659920	16401367	0	-	0.5125	(0.49,0.53]	chr17	1334870	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.25514	3.96743	4.67972	0.00227467	6.94757e-4	0.0209546	0.00876781
chr7	99359596	99359667	8421967	0	+	0.492958	(0.49,0.53]	chr7	641804	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-900K19.2:ARPC1A	ENSG00000284292.1:ENSG00000241685.10	ENST00000638617.1:ENST00000441989.6:ENST00000262942.10:ENST00000432786.5:ENST00000471960.5:ENST00000463009.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	3.25514	3.96743	4.67972	0.00227467	6.94757e-4	0.0209546	0.00876781
chr13	113309715	113309788	13908273	0	+	0.465753	(0.455,0.49]	chr13	1090335	2	CDS	CDS:EXON_MRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.30139	3.9673550000000004	5.63332	0.0530131	4.15159e-6	0.195536	1.32627e-4
chr8	116645005	116645103	10033905	0	-	0.44898	(0.42,0.455]	chr8	755320	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8	protein_coding	protein_coding	protein_coding	protein_coding	17	258	2	3.92008	3.9670750000000004	4.01407	1.33213e-9	1.22938e-10	1.46523e-7	1.62959e-8
chr10	84150054	84150148	11164598	0	+	0.553191	(0.53,0.59]	chr10	848151	1	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	5	110	2	3.70393	3.9668650000000003	4.2298	1.64739e-5	3.14318e-8	4.57148e-4	2.0761e-6
chr4	73186921	73187020	5467113	0	-	0.353535	(0.33,0.36]	chr4	437921	90	INTRON	INTRON	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000639793.1:ENST00000559367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.7655	3.9667399999999997	5.16798	0.0175892	4.80331e-5	0.0918323	9.91058e-4
chrX	120072615	120072691	19194061	0	-	0.578947	(0.53,0.59]	chrX	1631791	1	CDS	CDS:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	3.17316	3.966705	4.76025	7.8686e-5	3.4642e-7	0.00164157	1.61837e-5
chr8	56073189	56073234	9834806	0	-	0.466667	(0.455,0.49]	chr8	744195	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000523936.5:ENST00000519606.5:ENST00000521289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	81	2	3.71105	3.9666550000000003	4.22226	1.23185e-5	3.53197e-7	3.58356e-4	1.64321e-5
chr7	107919009	107919099	8457477	0	+	0.455556	(0.455,0.49]	chr7	646332	1	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	3.65079	3.966245	4.2817	3.61776e-4	2.07199e-7	0.00544764	1.04734e-5
chr1	44879912	44880008	972395	0	-	0.458333	(0.455,0.49]	chr1	102665	2	CDS	CDS:EXON_MRNA	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.46389	3.966235	4.46858	9.14164e-4	2.38087e-6	0.0110519	8.3081e-5
chr20	56474677	56474771	17835102	0	+	0.382979	(0.36,0.39]	chr20	1507983	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RTF2	ENSG00000022277.13	ENST00000023939.8:ENST00000395881.7:ENST00000357348.10:ENST00000449062.1:ENST00000487211.5:ENST00000466260.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.46497	3.966055	4.46714	0.00155822	0.00105709	0.0156889	0.0123035
chr9	130783553	130783653	10493258	0	+	0.39	(0.36,0.39]	chr9	792876	687	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.46497	3.966055	4.46714	0.00155822	0.00105709	0.0156889	0.0123035
chr1	43365280	43365376	968560	0	-	0.572917	(0.53,0.59]	chr1	102065	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.3733	3.9659500000000003	4.5586	0.0529193	0.00161229	0.18423900000000001	0.0169168
chr17	7403309	7403390	16429845	0	-	0.54321	(0.53,0.59]	chr17	1339632	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM256-PLSCR3:TMEM256	ENSG00000262481.5:ENSG00000205544.4	ENST00000573331.5:ENST00000570600.5:ENST00000571125.5:ENST00000570569.1:ENST00000302422.4:ENST00000575427.1:ENST00000576017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.3733	3.9659500000000003	4.5586	0.0529193	0.00161229	0.18423900000000001	0.0169168
chr5	653982	654079	5850975	0	+	0.57732000000000006	(0.53,0.59]	chr5	459950	4	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	17	2	3.3733	3.9659500000000003	4.5586	0.0529193	0.00161229	0.18423900000000001	0.0169168
chr8	127849939	127850038	9613263	0	+	0.545455	(0.53,0.59]	chr8	728535	33	INTRON	INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	0	17	2	3.3733	3.9659500000000003	4.5586	0.0529193	0.00161229	0.18423900000000001	0.0169168
chr11	57712618	57712718	11952150	0	+	0.57	(0.53,0.59]	chr11	914712	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.06939	3.9658550000000004	4.86232	6.54756e-4	4.57805e-4	0.00860229	0.00608573
chr15	55196809	55196890	15292621	0	-	0.493827	(0.49,0.53]	chr15	1207061	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000677147.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	115	2	3.61776	3.96584	4.31392	2.24471e-7	1.55447e-7	1.11909e-5	9.20055e-6
chr3	43480176	43480276	4144683	0	-	0.38	(0.36,0.39]	chr3	346418	471	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.33241	3.965555	4.5987	0.00193631	9.0208e-4	0.0192272	0.0102618
chr1	23787756	23787851	98991	0	+	0.452632	(0.42,0.455]	chr1	11526	5	UTR3	UTR3:EXON_MRNA	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000374524.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.56263	3.9654350000000003	5.36824	9.19381e-4	1.33083e-5	0.0104432	3.81624e-4
chr7	140085141	140085240	9105885	0	-	0.494949	(0.49,0.53]	chr7	694802	5	UTR3	UTR3:EXON_MRNA	KDM7A	ENSG00000006459.11	ENST00000397560.7:ENST00000472616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.38683	3.965365	5.5439	0.012654	8.44877e-6	0.0718207	2.39255e-4
chr2	43887807	43887906	2622908	0	-	0.373737	(0.36,0.39]	chr2	236084	17	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.89837	3.9652849999999997	4.0322	0.00588589	9.25116e-5	0.0427941	0.00169222
chr3	155893608	155893699	3824203	0	+	0.450549	(0.42,0.455]	chr3	326151	2	CDS	CDS:EXON_MRNA:INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.57051	3.9652399999999997	5.35997	0.0265466	2.41298e-5	0.120071	5.6648e-4
chr5	72198692	72198790	6027782	0	+	0.428571	(0.42,0.455]	chr5	472560	50	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.57051	3.9652399999999997	5.35997	0.0265466	2.41298e-5	0.120071	5.6648e-4
chr6	53291869	53291963	7740411	0	-	0.340426	(0.33,0.36]	chr6	594391	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	115	2	3.41894	3.965145	4.51135	5.62284e-6	1.51771e-10	1.86867e-4	1.96112e-8
chrX	152701490	152701583	18912171	0	+	0.516129	(0.49,0.53]	chrX	1610467	7	CDS	CDS:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.87508	3.96509	5.0551	4.55699e-4	2.55273e-8	0.00645757	1.73844e-6
chr8	47782161	47782254	9815554	0	-	0.44086	(0.42,0.455]	chr8	742485	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	3.70487	3.9650550000000004	4.22524	1.55091e-5	1.2079e-5	3.95473e-4	3.52389e-4
chrX	101403897	101403985	19151754	0	-	0.488636	(0.455,0.49]	chrX	1628696	2	CDS	CDS:EXON_MRNA	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.65079	3.964925	4.27906	3.61776e-4	8.82347e-6	0.00544764	2.48294e-4
chr6	117999353	117999448	7354842	0	+	0.578947	(0.53,0.59]	chr6	565161	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	SLC35F1:RP11-632C17__A.1	ENSG00000196376.11:ENSG00000230202.1	ENST00000360388.9:ENST00000443998.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	33	2	3.92573	3.96483	4.00393	0.0108084	8.62301e-5	0.064368	0.00160749
chr12	67306099	67306198	12934067	0	+	0.424242	(0.42,0.455]	chr12	1008094	11	CDS	CDS:EXON_MRNA:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.95538	3.964545	3.97371	6.68846e-5	6.07552e-5	0.00142352	0.00121305
chr2	54987490	54987559	2666256	0	-	0.449275	(0.42,0.455]	chr2	238493	1	CDS	CDS:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000402434.6:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	7	136	2	3.56851	3.96379	4.35907	3.9883e-5	2.02169e-10	9.51945e-4	2.53899e-8
chr12	22687711	22687809	12786280	0	+	0.285714	[0,0.29]	chr12	993067	29	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.63488	3.96367	4.29246	0.00254021	7.12896e-4	0.0227257	0.00897774
chr4	185161524	185161622	5832050	0	-	0.27551	[0,0.29]	chr4	458275	20	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.63488	3.96367	4.29246	0.00254021	7.12896e-4	0.0227257	0.00897774
chr18	68278154	68278243	17162262	0	-	0.382022	(0.36,0.39]	chr18	1408742	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-421N8.3:RP11-421N8.1	ENSG00000287907.1:ENSG00000260747.1	ENST00000661028.1:ENST00000567372.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	47	2	3.30591	3.9636649999999998	4.62142	1.89047e-4	7.26179e-7	0.003022	3.39859e-5
chr17	64503021	64503098	16639748	0	-	0.441558	(0.42,0.455]	chr17	1368496	1	CDS	CDS:UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000579996.5:ENST00000577787.1:ENST00000584549.1:ENST00000581551.1:ENST00000583201.5:ENST00000583894.1:ENST00000578400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	2.04128	3.9631800000000004	5.88508	0.00699169	8.1674e-7	0.0475909	3.36299e-5
chr1	26123867	26123966	107855	0	+	0.282828	[0,0.29]	chr1	12679	14	UTR3	UTR3:EXON_MRNA	PDIK1L	ENSG00000175087.10	ENST00000619836.4:ENST00000374269.2:ENST00000374271.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.0735	3.963085	4.85267	0.00785095	2.14908e-4	0.0520241	0.00332687
chr15	89202156	89202255	15093510	0	+	0.232323	[0,0.29]	chr15	1187100	69	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.0735	3.963085	4.85267	0.00785095	2.14908e-4	0.0520241	0.00332687
chr12	56161386	56161415	12898555	0	+	0.586207	(0.53,0.59]	chr12	1004367	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000549017.5:ENST00000549566.5:ENST00000550697.6:ENST00000547649.5:ENST00000547408.5:ENST00000548400.5:ENST00000546845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	3.7312	3.9628499999999995	4.1945	1.72205e-5	1.38467e-5	4.72777e-4	3.5918e-4
chr1	11950438	11950520	45237	0	+	0.609756	(0.59,1]	chr1	5725	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	84	2	3.58133	3.96281	4.34429	8.92036e-4	1.84713e-5	0.010856	4.5469e-4
chr1	149885311	149885405	1287096	0	-	0.425532	(0.42,0.455]	chr1	127851	10	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	10	188	2	3.38721	3.962575	4.53794	4.77528e-6	8.20655e-12	1.64158e-4	1.45928e-9
chr10	47706899	47706996	11032138	0	+	0.247423	[0,0.29]	chr10	840057	2	INTRON	INTRON	SHLD2P3	ENSG00000189014.7	ENST00000323387.5	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	17	2	3.47088	3.962535	4.45419	0.0015572	0.00133426	0.0165415	0.0139317
chr12	64739439	64739499	13378996	0	-	0.5	(0.49,0.53]	chr12	1054231	2	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000540196.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.38097	3.962435	5.5439	0.0425419	8.44877e-6	0.167547	2.39255e-4
chr10	74122327	74122426	11575817	0	-	0.343434	(0.33,0.36]	chr10	881667	22	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	3.81944	3.96217	4.1049	1.09933e-6	6.50118e-8	4.77678e-5	3.86264e-6
chr7	98386290	98386388	8943309	0	-	0.367347	(0.36,0.39]	chr7	682611	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	BAIAP2L1:RPS3AP26	ENSG00000006453.14:ENSG00000214389.2	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1:ENST00000398259.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	3	33	2	2.42114	3.962045	5.50295	0.00564641	7.4907e-6	0.0422191	2.17853e-4
chr1	669893	669993	823730	0	-	0.54	(0.53,0.59]	chr1	81486	369	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	30	2	3.62204	3.961995	4.30195	0.00421989	4.3021e-4	0.0328662	0.00620274
chr3	184368305	184368402	3949585	0	+	0.587629	(0.53,0.59]	chr3	332576	1	UTR3	UTR3:EXON_MRNA	POLR2H	ENSG00000163882.9	ENST00000456318.5:ENST00000438240.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1:ENST00000488213.5:ENST00000476003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.62204	3.961995	4.30195	0.00421989	4.3021e-4	0.0328662	0.00620274
chr7	56054368	56054435	8290442	0	+	0.432836	(0.42,0.455]	chr7	631460	1	CDS	CDS:EXON_MRNA:INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.81137	3.9617750000000003	5.11218	0.0120386	6.01815e-5	0.0700876	0.00130886
chr12	71786468	71786567	12950968	0	+	0.313131	(0.29,0.33]	chr12	1009718	9	UTR3	UTR3:EXON_MRNA	RAB21	ENSG00000080371.6	ENST00000261263.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.55049	3.961755	4.37302	6.15323e-4	6.52078e-6	0.00765848	2.12073e-4
chr7	22822779	22822852	8722612	0	-	0.657534	(0.59,1]	chr7	665846	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TOMM7	ENSG00000196683.11	ENST00000463284.2:ENST00000372879.8:ENST00000358435.9:ENST00000621567.1:ENST00000496129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	448	2	3.31205	3.96171	4.61137	3.23545e-6	2.96963e-10	1.18374e-4	3.57259e-8
chr4	55417860	55417918	4843417	0	+	0.362069	(0.36,0.39]	chr4	398967	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.48922	3.961685	5.43415	0.0110399	1.15393e-5	0.0652374	3.09736e-4
chr5	37302843	37302908	6540063	0	-	0.430769	(0.42,0.455]	chr5	506529	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1:ENST00000515054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	3.52659	3.9615	4.39641	6.87022e-4	4.03242e-6	0.00876781	1.29746e-4
chr9	111934874	111934973	10420397	0	+	0.343434	(0.33,0.36]	chr9	784485	20	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	7	75	2	3.21977	3.9610149999999997	4.70226	2.20185e-6	4.21411e-7	7.76651e-5	2.13696e-5
chr7	45104177	45104256	8801016	0	-	0.620253	(0.59,1]	chr7	671554	2	CDS	CDS:EXON_MRNA:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000483615.1:ENST00000488222.5:ENST00000484326.1:ENST00000478532.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.84748	3.961005	5.07453	0.0124539	0.00117617	0.0712518	0.0132131
chr12	68840448	68840548	12941193	0	+	0.28	[0,0.29]	chr12	1008678	7	UTR3	UTR3:EXON_MRNA	MDM2	ENSG00000135679.26	ENST00000258149.11:ENST00000539479.6	protein_coding	protein_coding	protein_coding	protein_coding	16	152	2	3.43699	3.960885	4.48478	1.96107e-8	1.05882e-11	1.38386e-6	2.00871e-9
chr4	108657548	108657647	5038466	0	+	0.373737	(0.36,0.39]	chr4	409862	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000510556.1:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	98	2	2.8207	3.960725	5.10075	4.47343e-5	6.673e-11	9.364e-4	1.04093e-8
chr3	93876965	93877040	4315032	0	-	0.493333	(0.49,0.53]	chr3	359822	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.72252	3.960675	5.19883	0.0161474	6.30063e-5	0.0860154	0.00124286
chr1	196689516	196689614	640975	0	+	0.459184	(0.455,0.49]	chr1	64457	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	3.33595	3.960655	4.58536	2.70224e-5	9.22269e-7	6.22285e-4	4.12764e-5
chr10	24620759	24620858	11416540	0	-	0.434343	(0.42,0.455]	chr10	870194	14	CDS	CDS:EXON_MRNA	ARHGAP21	ENSG00000107863.19	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000320481.10:ENST00000636789.1:ENST00000446003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.37329	3.960605	4.54792	0.00136107	9.66045e-4	0.0141115	0.0115185
chr1	1049379	1049451	2371	0	+	0.666667	(0.59,1]	chr1	543	3	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000492947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	54	2	2.47837	3.960365	5.44236	0.00970721	2.02004e-4	0.0608296	0.00317801
chr1	25863084	25863178	904974	0	-	0.56383	(0.53,0.59]	chr1	94121	3	CDS	CDS:EXON_MRNA	PAQR7	ENSG00000182749.6	ENST00000675840.1:ENST00000374296.4	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr1	32077240	32077318	126106	0	+	0.564103	(0.53,0.59]	chr1	15514	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000438825.5:ENST00000336294.10:ENST00000441402.5:ENST00000472503.5:ENST00000468135.5:ENST00000466321.5:ENST00000476968.5:ENST00000498613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr1	32334501	32334596	922175	0	-	0.578947	(0.53,0.59]	chr1	97099	8	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr1	155237419	155237498	1307081	0	-	0.582278	(0.53,0.59]	chr1	131997	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GBA	ENSG00000177628.16	ENST00000327247.9:ENST00000368373.8:ENST00000427500.7:ENST00000428024.3:ENST00000484489.5:ENST00000491081.5:ENST00000497670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr16	8855163	8855263	15844209	0	-	0.57	(0.53,0.59]	chr16	1265367	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr16	14644446	14644527	15559953	0	+	0.555556	(0.53,0.59]	chr16	1231741	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000566520.5:ENST00000562442.5:ENST00000562121.1:ENST00000261658.7:ENST00000563313.5:ENST00000570219.1:ENST00000566710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr16	89914667	89914761	15812347	0	+	0.542553	(0.53,0.59]	chr16	1259252	12	UTR5	UTR5:EXON_MRNA:INTRON	RP11-566K11.7:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr20	45891915	45891971	17802995	0	+	0.553571	(0.53,0.59]	chr20	1505419	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000607841.5:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr21	34842799	34842899	18227292	0	-	0.56	(0.53,0.59]	chr21	1546914	78	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr4	849375	849474	5276061	0	-	0.575758	(0.53,0.59]	chr4	424343	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GAK	ENSG00000178950.17	ENST00000502799.1:ENST00000314167.9:ENST00000504668.5:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511345.5:ENST00000511980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr6	170660527	170660627	7556990	0	+	0.59	(0.53,0.59]	chr6	576995	201	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr9	6834829	6834922	10173729	0	+	0.569892	(0.53,0.59]	chr9	766316	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	KDM4C:ACTG1P14	ENSG00000107077.19:ENSG00000230581.2	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5:ENST00000446382.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	0	16	2	3.61294	3.96035	4.30776	0.0310038	0.00407289	0.130016	0.0324137
chr12	54370255	54370355	13343473	0	-	0.65	(0.59,1]	chr12	1049675	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ZNF385A	ENSG00000161642.18	ENST00000551109.5:ENST00000352268.10:ENST00000394313.7:ENST00000338010.9:ENST00000550779.5:ENST00000546970.5:ENST00000552382.5:ENST00000551771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.58269	3.9603450000000002	5.338	0.0067313	3.196e-4	0.0461258	0.00457916
chr22	30907428	30907527	18344660	0	+	0.656566	(0.59,1]	chr22	1559128	12	UTR3	UTR3:EXON_MRNA	OSBP2	ENSG00000184792.16	ENST00000407373.5:ENST00000403222.7:ENST00000332585.11:ENST00000437268.6:ENST00000535268.5:ENST00000431368.5:ENST00000452656.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.58269	3.9603450000000002	5.338	0.0067313	3.196e-4	0.0461258	0.00457916
chr1	109661164	109661254	399687	0	+	0.533333	(0.53,0.59]	chr1	39026	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GSTM4	ENSG00000168765.17	ENST00000369836.9:ENST00000326729.9:ENST00000495742.5:ENST00000369833.5:ENST00000485640.5:ENST00000336075.6:ENST00000638994.1:ENST00000493171.5:ENST00000493395.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr1	151168143	151168240	470681	0	+	0.56701	(0.53,0.59]	chr1	47949	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCNM1	ENSG00000163156.12	ENST00000602841.5:ENST00000368902.1:ENST00000368905.9:ENST00000497147.1:ENST00000459799.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr1	156292929	156293011	1313968	0	-	0.560976	(0.53,0.59]	chr1	133366	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLMP	ENSG00000198715.13	ENST00000461597.1:ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000482579.1:ENST00000481050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr1	156294364	156294458	1313991	0	-	0.56383	(0.53,0.59]	chr1	133380	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	GLMP	ENSG00000198715.13	ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000476177.6:ENST00000497955.1:ENST00000368264.1:ENST00000479084.1:ENST00000484214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr1	226888975	226889049	739580	0	+	0.581081	(0.53,0.59]	chr1	74606	3	CDS	CDS:UTR3:EXON_MRNA	RP5-1087E8.6:PSEN2	ENSG00000288674.1:ENSG00000143801.18	ENST00000366779.6:ENST00000676884.1:ENST00000524196.6:ENST00000676888.1:ENST00000678835.1:ENST00000677599.1:ENST00000678233.1:ENST00000678820.1:ENST00000676945.1:ENST00000679098.1:ENST00000678655.1:ENST00000676907.1:ENST00000678706.1:ENST00000677529.1:ENST00000678320.1:ENST00000677748.1:ENST00000677414.1:ENST00000678784.1:ENST00000676840.1:ENST00000679088.1:ENST00000676747.1:ENST00000678021.1:ENST00000366783.8:ENST00000677880.1:ENST00000422240.6:ENST00000677596.1:ENST00000676467.1:ENST00000678776.1:ENST00000460775.5:ENST00000366782.6:ENST00000626989.3:ENST00000677065.1:ENST00000472139.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr10	102379520	102379606	11228171	0	+	0.581395	(0.53,0.59]	chr10	855155	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GBF1	ENSG00000107862.6	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000369983.4:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000676682.1:ENST00000676993.1:ENST00000678585.1:ENST00000678571.1:ENST00000677811.1:ENST00000678742.1:ENST00000679013.1:ENST00000678923.1:ENST00000676561.1:ENST00000679040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr11	117189951	117190025	12154574	0	+	0.540541	(0.53,0.59]	chr11	936273	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SIDT2	ENSG00000149577.16	ENST00000324225.9:ENST00000620360.4:ENST00000278951.11:ENST00000525339.1:ENST00000431081.6:ENST00000628876.2:ENST00000529441.5:ENST00000526813.1:ENST00000524988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr12	2057206	2057306	12690202	0	+	0.57	(0.53,0.59]	chr12	984573	32	INTRON	INTRON	CACNA1C	ENSG00000151067.23	ENST00000682544.1:ENST00000682462.1:ENST00000683781.1:ENST00000683956.1:ENST00000683840.1:ENST00000683824.1:ENST00000682867.1:ENST00000327702.12:ENST00000347598.9:ENST00000399603.6:ENST00000399641.6:ENST00000399655.6:ENST00000399634.6:ENST00000406454.8:ENST00000335762.10:ENST00000682835.1:ENST00000673589.2:ENST00000399617.6:ENST00000672806.1:ENST00000683482.1:ENST00000480911.6:ENST00000344100.7:ENST00000399591.5:ENST00000399595.5:ENST00000399597.5:ENST00000399601.5:ENST00000399606.5:ENST00000399621.5:ENST00000399629.5:ENST00000399637.5:ENST00000399638.5:ENST00000399644.5:ENST00000399649.5:ENST00000402845.7:ENST00000682686.1:ENST00000682336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr12	96035580	96035641	13485331	0	-	0.557377	(0.53,0.59]	chr12	1060573	2	UTR5	UTR5:EXON_MRNA:INTRON	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr15	78921934	78922031	15398581	0	-	0.57732000000000006	(0.53,0.59]	chr15	1217554	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr17	4672660	4672757	16418550	0	-	0.546392	(0.53,0.59]	chr17	1337513	11	CDS	CDS:UTR3:EXON_MRNA	PELP1	ENSG00000141456.16	ENST00000572293.7:ENST00000301396.8:ENST00000436683.6:ENST00000574876.5:ENST00000573523.5:ENST00000575329.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr17	38738352	38738448	16531413	0	-	0.5625	(0.53,0.59]	chr17	1353297	1	CDS	CDS:EXON_MRNA	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr17	42563022	42563122	16229135	0	+	0.59	(0.53,0.59]	chr17	1313092	4	CDS	CDS:UTR5:EXON_MRNA	COASY	ENSG00000068120.15	ENST00000586771.1:ENST00000421097.6:ENST00000393818.3:ENST00000591779.5:ENST00000590958.5:ENST00000587157.1:ENST00000587214.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr18	23543511	23543569	17037387	0	-	0.568965	(0.53,0.59]	chr18	1400573	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr19	18575229	18575325	17258833	0	+	0.552083	(0.53,0.59]	chr19	1425553	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000430157.6:ENST00000442744.7:ENST00000595683.5:ENST00000595158.5:ENST00000599551.5:ENST00000597451.5:ENST00000599595.5:ENST00000596272.5:ENST00000594527.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr19	44888566	44888660	17349488	0	+	0.542553	(0.53,0.59]	chr19	1439181	3	UTR3	UTR3:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252483.10:ENST00000592018.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr19	47229637	47229736	17596405	0	-	0.565657	(0.53,0.59]	chr19	1481601	8	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr2	27226224	27226319	1691581	0	+	0.547368	(0.53,0.59]	chr2	165691	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000491891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr2	33585064	33585159	2591210	0	-	0.547368	(0.53,0.59]	chr2	233279	3	CDS	CDS:UTR3:EXON_MRNA	FAM98A	ENSG00000119812.19	ENST00000238823.13:ENST00000474985.5:ENST00000403368.1:ENST00000475122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr2	131149057	131149156	2065749	0	+	0.545455	(0.53,0.59]	chr2	194095	24	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr20	53575726	53575823	18015898	0	-	0.546392	(0.53,0.59]	chr20	1526885	1	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3:ENST00000437222.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr22	41137652	41137721	18378537	0	+	0.550725	(0.53,0.59]	chr22	1564107	1	CDS	CDS:EXON_MRNA:INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634690.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr3	49130324	49130419	4172828	0	-	0.557895	(0.53,0.59]	chr3	350593	2	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr4	56976441	56976535	5435721	0	-	0.574468	(0.53,0.59]	chr4	435229	1	CDS	CDS:EXON_MRNA	NOA1	ENSG00000084092.7	ENST00000264230.5	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr5	71657540	71657637	6026819	0	+	0.536082	(0.53,0.59]	chr5	472497	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr7	24889786	24889885	8729841	0	-	0.585859	(0.53,0.59]	chr7	666428	174	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5:ENST00000415162.5:ENST00000441059.5:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr8	133461874	133461934	10106089	0	-	0.55	(0.53,0.59]	chr8	759787	1	CDS	CDS:EXON_MRNA	ST3GAL1	ENSG00000008513.16	ENST00000399640.3:ENST00000522652.6:ENST00000521180.5:ENST00000648219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.61856	3.960255	4.30195	0.0303021	0.00421989	0.129773	0.0328662
chr9	37089443	37089542	10252824	0	+	0.434343	(0.42,0.455]	chr9	771576	46	EXON_LNCRNA	EXON_LNCRNA	EBLN3P	ENSG00000281649.2	ENST00000660341.1:ENST00000625445.1:ENST00000664382.1:ENST00000658888.1:ENST00000654889.1	lncRNA	lncRNA	lncRNA	lncRNA	4	45	2	2.71736	3.96002	5.20268	3.91972e-4	3.59669e-5	0.00539186	8.71318e-4
chr14	23939786	23939884	14532455	0	-	0.469388	(0.455,0.49]	chr14	1139459	17	EXON_LNCRNA	EXON_LNCRNA	DHRS4-AS1	ENSG00000215256.4	ENST00000656761.1:ENST00000556379.1:ENST00000555045.2:ENST00000660207.1:ENST00000667602.1:ENST00000666884.1:ENST00000654375.1:ENST00000656462.1:ENST00000671411.1:ENST00000671346.1:ENST00000671464.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr14	35745426	35745525	14583112	0	-	0.464646	(0.455,0.49]	chr14	1142695	25	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr16	29989092	29989192	15628037	0	+	0.46	(0.455,0.49]	chr16	1239649	1	SS3_PROX	SS3_PROX:INTRON	TAOK2	ENSG00000149930.18	ENST00000279394.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr16	69118607	69118689	15993729	0	-	0.487805	(0.455,0.49]	chr16	1284019	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5:ENST00000519534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr19	4492720	4492816	17206794	0	+	0.479167	(0.455,0.49]	chr19	1414889	5	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr21	15878375	15878475	18052305	0	+	0.48	(0.455,0.49]	chr21	1532046	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000478932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr5	71650068	71650125	6026740	0	+	0.473684	(0.455,0.49]	chr5	472485	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000505435.4:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000684310.1:ENST00000509539.3:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr7	2729790	2729890	8651856	0	-	0.47	(0.455,0.49]	chr7	661376	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000407653.1:ENST00000496740.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr9	33442851	33442910	10632558	0	-	0.474576	(0.455,0.49]	chr9	803594	1	CDS	CDS:UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6:ENST00000494313.2:ENST00000645858.1:ENST00000463983.5:ENST00000473153.1:ENST00000643650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr9	99227959	99228000	10384034	0	+	0.463415	(0.455,0.49]	chr9	782332	1	CDS_START	CDS_START:CDS:EXON_MRNA	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr9	132689634	132689732	10502048	0	+	0.469388	(0.455,0.49]	chr9	793935	8	UTR3	UTR3:EXON_MRNA	GTF3C4	ENSG00000125484.12	ENST00000372146.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr9	136477615	136477689	10890942	0	-	0.472973	(0.455,0.49]	chr9	827600	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.71798	3.9599349999999998	4.20189	0.0202679	0.00397662	0.0984041	0.0322851
chr6	2889762	2889862	7570639	0	-	0.43	(0.42,0.455]	chr6	577661	26	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.36247	3.959745	5.55702	0.0462889	7.30994e-6	0.176878	2.13219e-4
chr2	33257435	33257511	1721397	0	+	0.671053	(0.59,1]	chr2	168700	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000413303.5:ENST00000468091.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.84557	3.9597299999999995	4.07389	0.0410704	7.9402e-5	0.163285	0.00150391
chr3	64013522	64013607	4241340	0	-	0.388235	(0.36,0.39]	chr3	356547	2	CDS	CDS:EXON_MRNA:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000467853.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.49441	3.95972	4.42503	0.00133228	7.81559e-4	0.0144372	0.00927662
chr17	32225298	32225392	16199280	0	+	0.404255	(0.39,0.42]	chr17	1308042	7	UTR3	UTR3:EXON_MRNA:INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.4261	3.95967	4.49324	0.00108192	0.00107164	0.0124943	0.0118238
chr8	47779003	47779093	9815521	0	-	0.411111	(0.39,0.42]	chr8	742479	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5:ENST00000536710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.4261	3.95967	4.49324	0.00108192	0.00107164	0.0124943	0.0118238
chr6	105080464	105080563	7310762	0	+	0.434343	(0.42,0.455]	chr6	562079	18	UTR3	UTR3:EXON_MRNA	LIN28B	ENSG00000187772.8	ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.05889	3.959635	4.86038	0.00524205	3.34791e-4	0.0399155	0.00472923
chr12	4302186	4302285	12704465	0	+	0.515152	(0.49,0.53]	chr12	985544	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	3.9516	3.9595849999999997	3.96757	6.96459e-5	6.21316e-5	0.0013446	0.00134149
chr19	1923128	1923187	17194554	0	+	0.559322	(0.53,0.59]	chr19	1412497	2	CDS	CDS:EXON_MRNA	SCAMP4	ENSG00000227500.10	ENST00000414057.6:ENST00000316097.13:ENST00000409472.5:ENST00000621748.1:ENST00000472442.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.61133	3.9595450000000003	4.30776	0.00407289	4.55298e-4	0.0324137	0.00608573
chr2	106697522	106697618	2825355	0	-	0.416667	(0.39,0.42]	chr2	252231	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	80	2	3.46448	3.959525	4.45457	1.2823e-5	4.72037e-8	3.70041e-4	2.93086e-6
chr12	120498210	120498304	13116607	0	+	0.457447	(0.455,0.49]	chr12	1023820	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000548342.5:ENST00000392508.2:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000552316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	127	2	3.8526	3.95947	4.06634	9.1752e-8	2.65694e-8	5.80216e-6	1.79757e-6
chr4	185162699	185162797	5832062	0	-	0.306122	(0.29,0.33]	chr4	458275	32	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.83531	3.9593050000000005	5.0833	0.00228447	4.57622e-5	0.0209856	0.00105479
chr7	107161326	107161423	8455232	0	+	0.309278	(0.29,0.33]	chr7	645853	19	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	11	85	2	2.35131	3.959285	5.56726	3.27474e-4	1.29916e-10	0.00502871	1.70396e-8
chr11	59594091	59594173	12400794	0	-	0.47561	(0.455,0.49]	chr11	959425	2	CDS	CDS:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1:ENST00000528903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.69053	3.959235	5.22794	0.0182983	4.80556e-5	0.0925808	9.91058e-4
chr1	1047775	1047835	2349	0	+	0.716667	(0.59,1]	chr1	531	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000466223.1:ENST00000478677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.24397	3.95917	5.67437	0.0206682	6.83706e-5	0.0997234	0.00132577
chr2	3575521	3575609	1616632	0	+	0.727273	(0.59,1]	chr2	160391	4	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.24397	3.95917	5.67437	0.0206682	6.83706e-5	0.0997234	0.00132577
chr19	45695534	45695632	17354355	0	+	0.612245	(0.59,1]	chr19	1440103	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	QPCTL	ENSG00000011478.13	ENST00000678102.1:ENST00000677542.1:ENST00000677024.1:ENST00000012049.10:ENST00000678862.1:ENST00000366382.8:ENST00000591606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.42639	3.9591149999999997	5.49184	0.0409084	1.61513e-4	0.163285	0.00265627
chr1	108940044	108940076	1217959	0	-	0.46875	(0.455,0.49]	chr1	118648	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6:ENST00000676391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr1	150648420	150648502	1289305	0	-	0.47561	(0.455,0.49]	chr1	128302	1	CDS	CDS:EXON_MRNA	GOLPH3L	ENSG00000143457.11	ENST00000271732.8:ENST00000427665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr1	180111942	180112040	582448	0	+	0.489796	(0.455,0.49]	chr1	60512	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000417046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr10	29698014	29698094	10993868	0	+	0.4875	(0.455,0.49]	chr10	836208	2	EXON_PSEUDO	EXON_PSEUDO	CKS1BP2	ENSG00000225976.5	ENST00000497342.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr11	125578948	125579026	12194155	0	+	0.474359	(0.455,0.49]	chr11	940653	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000524723.5:ENST00000278903.11:ENST00000531636.5:ENST00000527842.6:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr12	6591693	6591759	13187309	0	-	0.484848	(0.455,0.49]	chr12	1032340	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000646070.1:ENST00000537634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr14	35820124	35820220	14225706	0	+	0.458333	(0.455,0.49]	chr14	1113868	4	EXON_PSEUDO	EXON_PSEUDO	NUTF2P2	ENSG00000258300.2	ENST00000551207.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr14	64440125	64440195	14344036	0	+	0.485714	(0.455,0.49]	chr14	1121347	1	CDS	CDS:EXON_MRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000555252.5:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000554677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr16	84974962	84975060	16063264	0	-	0.459184	(0.455,0.49]	chr16	1290318	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr19	48918725	48918784	17367808	0	+	0.525424	(0.49,0.53]	chr19	1442140	2	CDS	CDS:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5:ENST00000460125.1:ENST00000469291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	122	2	3.58586	3.9590499999999995	4.33224	9.76044e-7	9.97008e-9	4.34504e-5	7.73834e-7
chr20	3866945	3867044	17659142	0	+	0.474747	(0.455,0.49]	chr20	1493074	9	UTR3	UTR3:EXON_MRNA	MAVS	ENSG00000088888.18	ENST00000416600.6:ENST00000428216.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr20	62668035	62668135	17862164	0	+	0.46	(0.455,0.49]	chr20	1510166	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLCO4A1	ENSG00000101187.16	ENST00000217159.6:ENST00000497209.5:ENST00000370507.5:ENST00000470412.5:ENST00000495889.5:ENST00000466961.5:ENST00000451793.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr22	41467530	41467614	18519527	0	-	0.47619	(0.455,0.49]	chr22	1581209	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHF5A	ENSG00000100410.8	ENST00000216252.4:ENST00000459687.5:ENST00000491254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr3	167794687	167794755	3869130	0	+	0.470588	(0.455,0.49]	chr3	327954	2	CDS	CDS:EXON_MRNA	SERPINI1	ENSG00000163536.13	ENST00000446050.7:ENST00000295777.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr6	13978254	13978352	7063054	0	+	0.469388	(0.455,0.49]	chr6	540626	5	UTR3	UTR3:EXON_MRNA	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000544682.5:ENST00000488300.6:ENST00000537388.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr6	53354714	53354801	7180383	0	+	0.482759	(0.455,0.49]	chr6	555417	1	EXON_PSEUDO	EXON_PSEUDO	RPL31P28	ENSG00000219863.5	ENST00000406329.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr7	135576341	135576414	8552577	0	+	0.479452	(0.455,0.49]	chr7	652697	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr9	91757477	91757559	10733371	0	-	0.463415	(0.455,0.49]	chr9	812006	3	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5:ENST00000548585.2:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr9	129814146	129814222	10867664	0	-	0.473684	(0.455,0.49]	chr9	824265	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TOR1A	ENSG00000136827.12	ENST00000351698.5:ENST00000651202.1:ENST00000474192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.81275	3.9590499999999995	4.10535	0.0138827	0.0064531	0.0760883	0.0450905
chr13	46126115	46126213	14009601	0	-	0.428571	(0.42,0.455]	chr13	1098488	3	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	2.08565	3.9590050000000003	5.83236	0.00331964	5.6476e-7	0.0277324	2.73442e-5
chr12	118144703	118144803	13108938	0	+	0.56	(0.53,0.59]	chr12	1023122	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PEBP1	ENSG00000089220.5	ENST00000261313.3:ENST00000542939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	3.2901	3.95885	4.6276	3.76429e-5	9.26038e-7	9.04578e-4	3.75136e-5
chr8	143816519	143816619	10146154	0	-	0.59	(0.53,0.59]	chr8	762859	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.72478	3.95883	5.19288	0.00324675	9.22873e-5	0.0282494	0.0016906
chr1	111184210	111184310	406218	0	+	0.42	(0.39,0.42]	chr1	39913	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	3.68154	3.958575	4.23561	3.05414e-4	1.16386e-5	0.00442973	3.43116e-4
chr9	128323371	128323442	10478068	0	+	0.380282	(0.36,0.39]	chr9	789860	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COQ4	ENSG00000167113.11	ENST00000609948.1:ENST00000608951.5:ENST00000300452.8:ENST00000372875.3	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.63115	3.9585	5.28585	0.0245975	2.81625e-5	0.114841	6.42183e-4
chr7	6462471	6462569	8664674	0	-	0.428571	(0.42,0.455]	chr7	662823	15	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	3.23707	3.95844	4.67981	5.38444e-4	2.71467e-4	0.00744072	0.00404536
chr2	187464325	187464422	3070142	0	-	0.28866000000000003	[0,0.29]	chr2	271827	2	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.87835	3.958165	4.03798	1.0775e-4	7.64187e-5	0.00192514	0.00160163
chr12	3211662	3211747	13174254	0	-	0.529412	(0.49,0.53]	chr12	1030788	1	EXON_PSEUDO	EXON_PSEUDO	RP11-543P15.1	ENSG00000227081.5	ENST00000495392.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	124	2	3.83059	3.95808	4.08557	6.9668e-7	1.38476e-8	3.27374e-5	1.02791e-6
chr17	39200282	39200344	16219442	0	+	0.677419	(0.59,1]	chr17	1310953	1	UTR5	UTR5:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	562	2	3.73508	3.95807	4.1810600000000004	1.79898e-7	1.00517e-9	1.04639e-5	1.05469e-7
chr6	26204744	26204800	7101590	0	+	0.625	(0.59,1]	chr6	542856	1	CDS	CDS:EXON_MRNA	H4C5	ENSG00000276966.2	ENST00000615164.2	protein_coding	protein_coding	protein_coding	protein_coding	6	197	2	3.38472	3.9579750000000002	4.53123	1.34433e-5	2.56542e-7	3.5182e-4	1.40938e-5
chr4	56484735	56484799	4848959	0	+	0.484375	(0.455,0.49]	chr4	399522	1	CDS	CDS:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	3.09445	3.957885	4.82132	6.1765e-4	1.63946e-7	0.00822794	8.57024e-6
chr6	26188764	26188864	7647179	0	-	0.6	(0.59,1]	chr6	582535	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C4	ENSG00000277157.2	ENST00000614247.2	protein_coding	protein_coding	protein_coding	protein_coding	8	277	2	3.52813	3.957825	4.38752	6.6436e-6	1.3511e-8	2.15543e-4	1.00635e-6
chr19	44992323	44992400	17350329	0	+	0.558442	(0.53,0.59]	chr19	1439398	2	CDS	CDS:UTR3:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000589347.1:ENST00000586915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	3.1234	3.9575	4.7916	0.00390623	2.73039e-7	0.0322851	1.31828e-5
chr18	31548614	31548712	16809186	0	+	0.377551	(0.36,0.39]	chr18	1386482	20	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	2.6862	3.95732	5.22844	8.18712e-5	4.38129e-9	0.00169784	3.79596e-7
chr2	169637722	169637821	2196714	0	+	0.343434	(0.33,0.36]	chr2	201011	3	UTR3	UTR3:EXON_MRNA	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000677750.1:ENST00000678721.1:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.57559	3.957275	4.33896	0.0262108	0.00182033	0.117079	0.0183913
chr8	109322308	109322385	10009335	0	-	0.337662	(0.33,0.36]	chr8	754443	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000678094.1:ENST00000519607.5:ENST00000427660.6:ENST00000676569.1:ENST00000677737.1:ENST00000521439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.57559	3.957275	4.33896	0.0262108	0.00182033	0.117079	0.0183913
chrX	120255730	120255829	18844016	0	+	0.353535	(0.33,0.36]	chrX	1605768	4	UTR3	UTR3:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.57559	3.957275	4.33896	0.0262108	0.00182033	0.117079	0.0183913
chr3	51993848	51993940	4181345	0	-	0.652174	(0.59,1]	chr3	352460	1	CDS	CDS:UTR3:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5:ENST00000492277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	325	2	3.35202	3.9571500000000004	4.56228	1.20662e-6	2.43411e-8	4.6842e-5	1.81903e-6
chr12	104265484	104265572	13058275	0	+	0.579545	(0.53,0.59]	chr12	1017573	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	TXNRD1:RPL18AP3	ENSG00000198431.16:ENSG00000213442.5	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1:ENST00000462885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	4	87	2	2.69635	3.95715	5.21795	0.00112127	8.67811e-9	0.0128408	6.8555e-7
chr20	63890699	63890793	17866832	0	+	0.510638	(0.49,0.53]	chr20	1511295	8	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.49797	3.956785	5.4156	0.00843736	1.84143e-5	0.0546021	4.53637e-4
chr13	54441227	54441315	14036979	0	-	0.636364	(0.59,1]	chr13	1101195	7	EXON_PSEUDO	EXON_PSEUDO	RPL13AP25	ENSG00000136149.6	ENST00000484130.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	42	2	3.4666	3.9566550000000005	4.44671	0.00931497	0.00133574	0.0586162	0.0139317
chr11	115539298	115539384	12613539	0	-	0.511628	(0.49,0.53]	chr11	978175	6	EXON_PSEUDO	EXON_PSEUDO	RP11-136I14.3	ENSG00000257087.1	ENST00000537926.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	33	2	3.73494	3.95664	4.17834	0.0189345	1.74561e-5	0.0934721	4.38078e-4
chr2	174720235	174720318	2221021	0	+	0.46988	(0.455,0.49]	chr2	203051	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC018890.6:H3P6	ENSG00000236449.2:ENSG00000235655.3	ENST00000442996.1:ENST00000369387.4	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	7	112	2	3.9442	3.956595	3.96899	2.27279e-7	4.22539e-8	1.1289e-5	2.95174e-6
chr1	52373280	52373375	1018689	0	-	0.547368	(0.53,0.59]	chr1	105564	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.71318	3.956005	5.19883	0.00340745	8.7034e-5	0.0283456	0.00177086
chr17	42613646	42613733	16229308	0	+	0.586207	(0.53,0.59]	chr17	1313166	1	CDS	CDS:UTR3:EXON_MRNA	TUBG1	ENSG00000131462.9	ENST00000680678.1:ENST00000681413.1:ENST00000680672.1:ENST00000681490.1:ENST00000681947.1:ENST00000588056.2:ENST00000251413.8:ENST00000591509.5:ENST00000589688.2:ENST00000681919.1:ENST00000681114.1:ENST00000680617.1:ENST00000679484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.78899	3.956	5.12301	0.00245784	1.2852e-4	0.0221765	0.00241206
chr12	29392842	29392941	12810676	0	+	0.373737	(0.36,0.39]	chr12	994754	37	EXON_LNCRNA	EXON_LNCRNA:INTRON	OVCH1-AS1	ENSG00000257599.3	ENST00000641955.1:ENST00000551108.1:ENST00000550906.2	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	3.66978	3.9558599999999995	4.24194	0.00276729	3.25031e-4	0.0247437	0.00463603
chr15	42529746	42529819	14892379	0	+	0.383562	(0.36,0.39]	chr15	1170505	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000566327.5:ENST00000566035.5:ENST00000568514.5:ENST00000397138.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5:ENST00000563333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.66978	3.9558599999999995	4.24194	0.00276729	3.25031e-4	0.0247437	0.00463603
chr21	14378198	14378269	18163737	0	-	0.366197	(0.36,0.39]	chr21	1542411	1	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.66978	3.9558599999999995	4.24194	0.00276729	3.25031e-4	0.0247437	0.00463603
chr1	65610213	65610296	253411	0	+	0.325301	(0.29,0.33]	chr1	28859	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	3.62683	3.95581	4.28479	6.18968e-4	1.86411e-7	0.00822794	9.59082e-6
chr7	139045503	139045603	9102036	0	-	0.4	(0.39,0.42]	chr7	694516	21	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.149	3.95572	5.76244	0.0149155	1.61725e-6	0.0812412	5.98677e-5
chr16	81614706	81614806	15771098	0	+	0.48	(0.455,0.49]	chr16	1255471	29	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.24913	3.955615	4.6621	0.00239443	7.84472e-4	0.0225356	0.00927662
chr5	82274866	82274962	6672979	0	-	0.489583	(0.455,0.49]	chr5	515057	17	UTR3	UTR3:EXON_MRNA	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.24913	3.955615	4.6621	0.00239443	7.84472e-4	0.0225356	0.00927662
chr19	811857	811951	17189593	0	+	0.574468	(0.53,0.59]	chr19	1411055	12	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	228	2	3.91127	3.95539	3.99951	7.02843e-9	3.17386e-9	6.26301e-7	2.87238e-7
chr11	61314430	61314486	12404046	0	-	0.5	(0.49,0.53]	chr11	960223	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000538280.1:ENST00000545930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.35133	3.95531	4.55929	0.00150139	0.00116196	0.0152367	0.0130851
chr14	81196174	81196241	14730537	0	-	0.522388	(0.49,0.53]	chr14	1154007	2	CDS	CDS:UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.35133	3.95531	4.55929	0.00150139	0.00116196	0.0152367	0.0130851
chr2	26778133	26778226	1688708	0	+	0.602151	(0.59,1]	chr2	165132	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000482746.1:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.32455	3.9552699999999996	5.58599	0.0520547	1.04372e-4	0.193787	0.00186841
chr3	186584429	186584509	3957131	0	+	0.5125	(0.49,0.53]	chr3	333574	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNAJB11:RP11-134F2.8	ENSG00000090520.12:ENSG00000283149.1	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1:ENST00000681543.1:ENST00000679794.1:ENST00000418776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	1.99044	3.9552199999999997	5.92	0.0435903	6.89283e-7	0.170594	2.91313e-5
chr19	38634992	38635029	17322891	0	+	0.513514	(0.49,0.53]	chr19	1434252	1	CDS	CDS:EXON_MRNA:INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000592558.1:ENST00000590134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	3.01617	3.95511	4.89405	8.62231e-4	2.57983e-4	0.0100487	0.00419998
chr20	50128116	50128187	18004613	0	-	0.56338	(0.53,0.59]	chr20	1526020	3	CDS	CDS:UTR3:EXON_MRNA	PEDS1-UBE2V1:PEDS1	ENSG00000124208.16:ENSG00000240849.11	ENST00000341698.2:ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6:ENST00000371658.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	3.82407	3.95503	4.08599	0.0179666	3.38473e-5	0.0918323	7.45971e-4
chr9	73162781	73162861	10304711	0	+	0.4375	(0.42,0.455]	chr9	776034	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	125	2	3.84597	3.9548249999999996	4.06368	1.14286e-7	1.35004e-8	6.27715e-6	1.10065e-6
chr4	121668293	121668380	5625876	0	-	0.37931	(0.36,0.39]	chr4	448423	5	UTR3	UTR3:EXON_MRNA	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000509648.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	3.53529	3.95476	4.37423	6.0978e-5	4.42053e-6	0.00132411	1.39924e-4
chr17	47656859	47656935	16251696	0	+	0.5	(0.49,0.53]	chr17	1316651	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	3.55094	3.954745	4.35855	5.06834e-6	1.33508e-6	1.7169e-4	5.11797e-5
chr4	87382254	87382308	5518461	0	-	0.444444	(0.42,0.455]	chr4	441970	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1:ENST00000508413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	3.10874	3.95469	4.80064	5.40397e-4	3.0479e-4	0.00688813	0.00472028
chr3	132231832	132231932	4457604	0	-	0.44	(0.42,0.455]	chr3	370292	1912	INTRON	INTRON	CPNE4	ENSG00000196353.12	ENST00000512055.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	3.35491	3.954435	4.55396	1.39104e-4	1.1523e-6	0.00235518	4.9483e-5
chr4	139295042	139295094	5669742	0	-	0.5	(0.49,0.53]	chr4	450429	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFC1	ENSG00000109390.13	ENST00000503997.5:ENST00000394228.5:ENST00000539387.5:ENST00000539002.5:ENST00000544855.5:ENST00000394223.2:ENST00000505036.5:ENST00000394225.6:ENST00000503453.5:ENST00000676245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.56183	3.954365	5.3469	0.0261296	2.75121e-5	0.118976	6.30607e-4
chr1	149851406	149851506	464859	0	+	0.59	(0.53,0.59]	chr1	46805	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC19	ENSG00000272196.2	ENST00000607355.2	protein_coding	protein_coding	protein_coding	protein_coding	20	391	2	3.46764	3.95428	4.44092	2.71627e-8	1.65212e-12	2.00055e-6	3.52751e-10
chr17	80602548	80602642	16705374	0	-	0.340426	(0.33,0.36]	chr17	1376798	1	EXON_PSEUDO	EXON_PSEUDO	RPL31P7	ENSG00000232083.3	ENST00000448339.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.56949	3.954225	4.33896	0.00182033	5.48184e-4	0.0183913	0.00697082
chr3	33120343	33120418	3397590	0	+	0.48	(0.455,0.49]	chr3	295477	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1:ENST00000485310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.40664	3.9541449999999996	5.50165	0.0123662	4.07511e-10	0.0705839	4.7328e-8
chr3	13319834	13319906	4046222	0	-	0.680556	(0.59,1]	chr3	339524	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	152	2	3.40421	3.953875	4.50354	1.95627e-4	2.35412e-7	0.00334517	1.16448e-5
chr8	85337003	85337063	9920392	0	-	0.483333	(0.455,0.49]	chr8	749280	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5:ENST00000524324.5:ENST00000517618.5:ENST00000519991.5:ENST00000523712.5:ENST00000520663.5:ENST00000517590.5:ENST00000518233.5:ENST00000517429.5:ENST00000521846.5:ENST00000522579.5:ENST00000518341.5:ENST00000522814.5:ENST00000522662.5:ENST00000523858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.54461	3.9538399999999996	4.36307	0.00218641	4.40117e-5	0.0208941	9.24938e-4
chr3	101576671	101576763	4331342	0	-	0.467391	(0.455,0.49]	chr3	361271	3	EXON_PSEUDO	EXON_PSEUDO	RP11-234A1.1	ENSG00000242299.1	ENST00000496294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	206	2	3.89484	3.9538	4.01276	6.63217e-8	1.37969e-10	4.34166e-6	1.80228e-8
chr16	29808659	29808721	15626795	0	+	0.532258	(0.53,0.59]	chr16	1239329	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAZ:AC009133.24	ENSG00000103495.14:ENSG00000280607.1	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000561855.1:ENST00000616501.4:ENST00000567444.5:ENST00000568411.5:ENST00000563012.1:ENST00000562557.5:ENST00000568544.5:ENST00000569978.1:ENST00000568282.1:ENST00000565777.1:ENST00000562594.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	29	2	2.7898	3.953435	5.11707	0.0128364	1.35965e-4	0.0719798	0.00231202
chr13	97992952	97993014	13858968	0	+	0.419355	(0.39,0.42]	chr13	1086649	2	CDS	CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.75753	3.953195	4.14886	0.00415881	2.04026e-4	0.0325842	0.00320361
chr8	37895776	37895876	9794543	0	-	0.4	(0.39,0.42]	chr8	740428	178	INTRON	INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.75753	3.953195	4.14886	0.00415881	2.04026e-4	0.0325842	0.00320361
chr10	117305393	117305493	11711329	0	-	0.38	(0.36,0.39]	chr10	893478	147	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000482496.5:ENST00000489302.5:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.75007	3.953085	4.1561	2.12157e-4	2.14257e-5	0.00329275	5.67278e-4
chr16	32880539	32880601	15920260	0	-	0.548387	(0.53,0.59]	chr16	1276410	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SLC6A10P	ENSG00000214617.9	ENST00000330048.9:ENST00000431994.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	44	2	2.56665	3.953065	5.33948	0.00209536	4.08763e-5	0.0196588	9.64741e-4
chr17	14705442	14705534	16454130	0	-	0.456522	(0.455,0.49]	chr17	1343038	5	EXON_PSEUDO	EXON_PSEUDO	RPS18P12	ENSG00000230897.1	ENST00000412454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	196	2	3.23643	3.9528600000000003	4.66929	8.7404e-7	7.10298e-12	3.95587e-5	1.2832e-9
chr1	19155516	19155592	876487	0	-	0.394737	(0.39,0.42]	chr1	90209	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	3.4124	3.95282	4.49324	0.00108192	9.95835e-5	0.0124943	0.00180006
chr19	54183596	54183673	17627758	0	-	0.636364	(0.59,1]	chr19	1488035	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2:ENST00000414665.5:ENST00000453320.1:ENST00000464098.5:ENST00000474910.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.36593	3.9528100000000004	5.53969	0.0141097	1.29608e-4	0.077233	0.00223885
chr1	143904206	143904302	1261678	0	-	0.645833	(0.59,1]	chr1	123668	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	H2BP2:H3-2	ENSG00000234571.2:ENSG00000273213.4	ENST00000609585.1:ENST00000669710.1:ENST00000650532.1:ENST00000609879.2:ENST00000449108.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	2	54	2	2.67996	3.952725	5.22549	0.00470478	5.13843e-4	0.0363963	0.00665221
chr20	43716331	43716413	17794530	0	+	0.634146	(0.59,1]	chr20	1504265	4	UTR3	UTR3:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.76802	3.952405	5.13679	0.0158525	9.28022e-4	0.0854671	0.0111748
chr3	49024658	49024730	4171673	0	-	0.541667	(0.53,0.59]	chr3	350217	1	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000466147.5:ENST00000463903.1:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000484872.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000481274.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.8188	3.952395	4.08599	1.54941e-4	3.38473e-5	0.0028049	7.45971e-4
chr1	27407495	27407594	908778	0	-	0.50505	(0.49,0.53]	chr1	95011	34	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	3.72114	3.952375	4.18361	1.38104e-5	3.77422e-8	3.94563e-4	2.4281e-6
chr15	42568702	42568802	14892748	0	+	0.4	(0.39,0.42]	chr15	1170560	20	UTR3	UTR3:EXON_MRNA	HAUS2	ENSG00000137814.12	ENST00000260372.8:ENST00000391623.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.93996	3.95203	3.9641	0.00841622	6.346e-5	0.054565	0.00124725
chr22	31621333	31621399	18473641	0	-	0.636364	(0.59,1]	chr22	1576735	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PISD:MIR7109	ENSG00000241878.11:ENSG00000284082.1	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000613748.1:ENST00000422020.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	41	2	3.36223	3.9520299999999997	4.54183	0.0070583	0.00203572	0.0478044	0.0192213
chr11	34453141	34453194	11906148	0	+	0.566038	(0.53,0.59]	chr11	909787	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.86102	3.952	5.04298	0.0017805	1.91383e-4	0.0172974	0.0032874
chr1	32333529	32333626	128534	0	+	0.329897	(0.29,0.33]	chr1	15954	6	UTR3	UTR3:EXON_MRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	3.26422	3.95198	4.63974	4.81181e-4	2.56761e-4	0.00677016	0.00385453
chrX	110177295	110177393	18820979	0	+	0.530612	(0.53,0.59]	chrX	1603939	40	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	3.91162	3.951765	3.99191	5.86351e-5	4.03766e-6	0.00129243	1.29819e-4
chr19	17405382	17405475	17495815	0	-	0.602151	(0.59,1]	chr19	1467263	2	CDS	CDS:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	109	2	3.73368	3.95172	4.16976	4.80088e-5	3.43356e-5	9.91058e-4	8.37726e-4
chr8	21976438	21976521	9221820	0	+	0.518072	(0.49,0.53]	chr8	704943	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.83319	3.951305	4.06942	1.34601e-4	3.44689e-5	0.00249552	7.57659e-4
chr1	42179510	42179609	964203	0	-	0.323232	(0.29,0.33]	chr1	101503	31	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.44697	3.951155	4.45534	0.00110984	0.00101442	0.0127344	0.0112862
chr2	31964197	31964297	2589561	0	-	0.33	(0.29,0.33]	chr2	233115	10	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000490459.5:ENST00000426310.6:ENST00000413686.1:ENST00000407893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.44697	3.951155	4.45534	0.00110984	0.00101442	0.0127344	0.0112862
chr1	19223482	19223569	877179	0	-	0.563218	(0.53,0.59]	chr1	90441	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000486405.1:ENST00000494770.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.77921	3.95111	5.12301	0.0132865	1.2852e-4	0.0740932	0.00241206
chr14	102012033	102012113	14495456	0	+	0.55	(0.53,0.59]	chr14	1133094	3	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1:ENST00000647366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	3.46349	3.95106	4.43863	0.00254763	9.2216e-4	0.0233955	0.0104432
chr14	30885468	30885544	14201256	0	+	0.473684	(0.455,0.49]	chr14	1112909	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000557065.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	3.65079	3.950895	4.251	3.61776e-4	2.66207e-7	0.00544764	1.29082e-5
chr17	42841497	42841578	16230326	0	+	0.469136	(0.455,0.49]	chr17	1313599	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000543428.5:ENST00000293362.7:ENST00000592169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.12843	3.950805	4.77318	0.00392855	4.7888e-4	0.0322851	0.00628636
chr2	222634465	222634541	3197036	0	-	0.460526	(0.455,0.49]	chr2	281722	2	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.12843	3.950805	4.77318	0.00392855	4.7888e-4	0.0322851	0.00628636
chr6	34873332	34873432	7126501	0	+	0.49	(0.455,0.49]	chr6	548490	10	UTR3	UTR3:EXON_MRNA:INTRON	UHRF1BP1	ENSG00000065060.17	ENST00000452449.6:ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.12843	3.950805	4.77318	0.00392855	4.7888e-4	0.0322851	0.00628636
chr9	111931270	111931357	10420357	0	+	0.402299	(0.39,0.42]	chr9	784472	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000474306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.74243	3.950805	5.15918	0.00369167	9.11314e-9	0.030936	7.16729e-7
chr1	42176835	42176934	964176	0	-	0.383838	(0.36,0.39]	chr1	101503	4	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.74524	3.95067	4.1561	2.14257e-5	1.17259e-5	5.67278e-4	3.12994e-4
chr1	171574993	171575060	537448	0	+	0.507463	(0.49,0.53]	chr1	57696	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.8671	3.950455	5.03381	0.0100489	1.49689e-4	0.0623334	0.0024973
chr9	34087367	34087465	10634754	0	-	0.520408	(0.49,0.53]	chr9	803967	11	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.8671	3.950455	5.03381	0.0100489	1.49689e-4	0.0623334	0.0024973
chr11	58620071	58620170	11955374	0	+	0.343434	(0.33,0.36]	chr11	914993	25	UTR3	UTR3:EXON_MRNA:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.70185	3.950305	5.19876	0.00121183	2.37278e-5	0.0129756	6.1689e-4
chrX	55013566	55013648	19084600	0	-	0.536585	(0.53,0.59]	chrX	1623737	2	CDS	CDS:EXON_MRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	3.29606	3.94965	4.6032400000000004	3.39455e-6	1.08833e-6	1.12107e-4	4.73591e-5
chr17	22204959	22205056	16168821	0	+	0.536082	(0.53,0.59]	chr17	1304328	10	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	66	2	3.58031	3.9496249999999997	4.31894	3.64147e-5	7.82085e-6	8.79008e-4	2.24148e-4
chr1	43704752	43704848	166700	0	+	0.520833	(0.49,0.53]	chr1	21511	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-7O11.7:KDM4A	ENSG00000284989.1:ENSG00000066135.13	ENST00000645057.1:ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	3.80825	3.94937	4.09049	2.9452e-5	7.68944e-6	7.32348e-4	2.20857e-4
chr1	154246291	154246379	479890	0	+	0.488636	(0.455,0.49]	chr1	49649	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000368504.5:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	3.13787	3.9491750000000003	4.76048	4.66183e-4	3.99985e-4	0.00616585	0.00588767
chr6	28159163	28159262	7105843	0	+	0.484848	(0.455,0.49]	chr6	543601	53	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.13787	3.9491750000000003	4.76048	4.66183e-4	3.99985e-4	0.00616585	0.00588767
chr11	134185430	134185526	12675242	0	-	0.34375	(0.33,0.36]	chr11	983397	2	CDS	CDS:EXON_MRNA	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000534532.6:ENST00000525964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.6995	3.9491300000000003	5.19876	0.017838	2.37278e-5	0.0934844	6.1689e-4
chr3	17157355	17157453	4059093	0	-	0.306122	(0.29,0.33]	chr3	341127	3	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.48001	3.949065	4.41812	0.00162106	0.00126219	0.0161179	0.013837
chr4	73090954	73091050	5466120	0	-	0.4375	(0.42,0.455]	chr4	437754	4	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	3.43465	3.94885	4.46305	3.26154e-6	3.92862e-8	1.08317e-4	2.77318e-6
chr19	40610531	40610594	17330323	0	+	0.714286	(0.59,1]	chr19	1435987	1	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8:ENST00000243562.13:ENST00000546155.5:ENST00000598256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.76006	3.9484250000000003	5.13679	0.00330486	9.28022e-4	0.027613	0.0111748
chr11	77313861	77313946	12032837	0	+	0.470588	(0.455,0.49]	chr11	927995	4	EXON_PSEUDO	EXON_PSEUDO	TOMM20P1	ENSG00000224829.3	ENST00000534518.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	38	2	2.26324	3.9482800000000005	5.63332	0.00868189	4.15159e-6	0.0558093	1.32627e-4
chr6	67881206	67881299	7784071	0	-	0.44086	(0.42,0.455]	chr6	596219	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1	lncRNA	lncRNA	lncRNA	lncRNA	23	352	2	3.53522	3.948045	4.36087	2.72589e-9	1e-12	2.74393e-7	2.25522e-10
chr6	33304552	33304638	7669254	0	-	0.662791	(0.59,1]	chr6	587573	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	364	2	3.48467	3.947795	4.41092	1.80546e-6	3.61485e-9	7.29705e-5	3.2115e-7
chr1	65601842	65601901	253322	0	+	0.322034	(0.29,0.33]	chr1	28837	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	3.31653	3.947325	4.57812	0.00261621	9.55291e-7	0.0238929	3.84721e-5
chr19	54174231	54174319	17627659	0	-	0.670455	(0.59,1]	chr19	1488017	2	CDS	CDS:UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	108	2	3.34612	3.947225	4.54833	2.60979e-4	5.67833e-6	0.0042461	1.72297e-4
chr1	109236469	109236548	398101	0	+	0.506329	(0.49,0.53]	chr1	38591	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000369923.4:ENST00000468588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.51981	3.94702	4.37423	6.88328e-4	4.77238e-6	0.00876781	1.49327e-4
chr19	4839191	4839291	17434013	0	-	0.57	(0.53,0.59]	chr19	1455547	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000589163.5:ENST00000585479.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.61856	3.94691	4.27526	0.0303021	1.03921e-5	0.129773	2.85526e-4
chr6	27132559	27132650	7648716	0	-	0.516484	(0.49,0.53]	chr6	582717	2	CDS	CDS:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	22	336	2	3.59219	3.946795	4.3014	1.15597e-9	1.19122e-11	1.19107e-7	2.23707e-9
chr19	40629550	40629639	17330542	0	+	0.775281	(0.59,1]	chr19	1436078	1	UTR3	UTR3:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000595118.5:ENST00000318809.11:ENST00000598166.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.61074	3.94679	5.28284	0.025486	4.04404e-4	0.117089	0.00550292
chr12	111453757	111453845	13539851	0	-	0.568182	(0.53,0.59]	chr12	1065240	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000484991.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000475132.1:ENST00000550844.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.56002	3.946765	5.33351	0.00634904	4.35359e-5	0.0446708	0.00091744700000000005
chr9	72108015	72108114	10689068	0	-	0.50505	(0.49,0.53]	chr9	808824	3	EXON_PSEUDO	EXON_PSEUDO	BTF3P4	ENSG00000224820.2	ENST00000418852.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.94177	3.946685	3.9516	0.0104929	6.96459e-5	0.063428	0.0013446
chr20	49094885	49094963	17811858	0	+	0.487179	(0.455,0.49]	chr20	1506592	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	3.61387	3.946465	4.27906	2.88949e-5	8.82347e-6	7.23839e-4	2.48294e-4
chr6	160079717	160079787	7528700	0	+	0.485714	(0.455,0.49]	chr6	574914	3	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	3.87233	3.946365	4.0204	0.00736097	1.08465e-4	0.0490627	0.00193256
chr20	37519350	37519450	17962224	0	-	0.28	[0,0.29]	chr20	1522206	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6:ENST00000397135.1:ENST00000397134.1:ENST00000397131.1:ENST00000432507.1:ENST00000445723.5:ENST00000414080.1:ENST00000456058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	3.78212	3.9462099999999998	4.1103	0.00493104	3.32518e-4	0.0366648	0.00506816
chr17	35608141	35608223	16206319	0	+	0.463415	(0.455,0.49]	chr17	1309035	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000593014.3:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	3.3841	3.946075	4.50805	0.00122223	1.17485e-4	0.0135383	0.00206023
chr6	7339385	7339476	7587407	0	-	0.461538	(0.455,0.49]	chr6	578773	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	SSR1:CAGE1:RP11-69L16.5	ENSG00000124783.14:ENSG00000164304.16:ENSG00000220472.1	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8:ENST00000407940.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	6	105	2	3.76882	3.9459049999999998	4.12299	1.00626e-5	9.14802e-9	3.03291e-4	7.185e-7
chr17	46031280	46031377	16565489	0	-	0.247423	[0,0.29]	chr17	1360684	15	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1:ENST00000574963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	3.87311	3.9455999999999998	4.01809	5.02275e-6	3.95788e-6	1.55529e-4	1.39668e-4
chr4	118723217	118723316	5617826	0	-	0.292929	(0.29,0.33]	chr4	447551	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.64709	3.94548	4.24387	0.00263476	3.76873e-4	0.0239118	0.00523508
chr17	59201562	59201631	16292919	0	+	0.478261	(0.455,0.49]	chr17	1321371	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PRR11:CTD-2510F5.6	ENSG00000068489.13:ENSG00000265303.1	ENST00000262293.9:ENST00000578542.5:ENST00000580177.5:ENST00000614081.1:ENST00000577660.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.68903	3.9454599999999997	4.20189	0.00397662	1.71879e-5	0.0322851	4.32994e-4
chr1	169106926	169107026	527812	0	+	0.75	(0.59,1]	chr1	56673	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP1B1	ENSG00000143153.13	ENST00000367816.5:ENST00000367815.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.65509	3.945195	4.2353	0.0165254	5.95213e-4	0.0873033	0.00746384
chr10	91222779	91222871	11187174	0	+	0.521739	(0.49,0.53]	chr10	850381	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000496708.1:ENST00000336126.6:ENST00000490164.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.60653	3.9449249999999996	4.28332	0.00338762	4.50981e-4	0.0288632	0.00605268
chr12	53308047	53308133	13338790	0	-	0.5	(0.49,0.53]	chr12	1049030	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000550033.5:ENST00000672900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	3.60653	3.9449249999999996	4.28332	0.00338762	4.50981e-4	0.0288632	0.00605268
chr14	94057821	94057897	14775211	0	-	0.5	(0.49,0.53]	chr14	1157284	1	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.60653	3.9449249999999996	4.28332	0.00338762	4.50981e-4	0.0288632	0.00605268
chr6	24976553	24976638	7095352	0	+	0.458824	(0.455,0.49]	chr6	542239	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP29	ENSG00000214975.4	ENST00000414949.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	55	2	3.37741	3.9448600000000003	4.51231	1.27402e-4	1.73754e-6	0.00241206	6.36428e-5
chr4	41954297	41954396	4809489	0	+	0.272727	[0,0.29]	chr4	396957	2	UTR3	UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	3.78212	3.94479	4.10746	3.32518e-4	2.65773e-5	0.00506816	6.14226e-4
chr6	143442472	143442572	8005146	0	-	0.41	(0.39,0.42]	chr6	611729	6	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	3.76249	3.944635	4.12678	1.04037e-5	7.24702e-7	2.85665e-4	3.39777e-5
chr6	30486311	30486404	7111186	0	+	0.387097	(0.36,0.39]	chr6	544740	5	EXON_PSEUDO	EXON_PSEUDO	RANP1	ENSG00000236603.2	ENST00000455094.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	40	2	3.46497	3.9445	4.42403	0.00105709	3.10878e-6	0.0123035	1.04078e-4
chr10	5457975	5458074	10909079	0	+	0.414141	(0.39,0.42]	chr10	830430	11	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49701	3.944445	5.39188	0.0339607	1.75441e-5	0.141431	4.38078e-4
chr8	21981730	21981803	9221876	0	+	0.410959	(0.39,0.42]	chr8	704961	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.49701	3.944445	5.39188	0.0339607	1.75441e-5	0.141431	4.38078e-4
chr8	60584722	60584812	9353147	0	+	0.411111	(0.39,0.42]	chr8	715302	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000529579.5:ENST00000466595.5:ENST00000429861.5:ENST00000534260.5:ENST00000525529.5:ENST00000530071.5:ENST00000452437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.49701	3.944445	5.39188	0.0339607	1.75441e-5	0.141431	4.38078e-4
chr9	96360153	96360221	10750662	0	-	0.411765	(0.39,0.42]	chr9	813822	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC35D2	ENSG00000130958.13	ENST00000650065.1:ENST00000253270.13:ENST00000375259.9:ENST00000490599.2:ENST00000482643.2:ENST00000375257.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.49701	3.944445	5.39188	0.0339607	1.75441e-5	0.141431	4.38078e-4
chr8	56073234	56073272	9834807	0	-	0.368421	(0.36,0.39]	chr8	744196	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000523936.5:ENST00000519606.5:ENST00000521289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.76778	3.94416	5.12054	0.00365703	7.15553e-5	0.0307238	0.00137393
chr16	47429	47529	15814999	0	-	0.54	(0.53,0.59]	chr16	1259822	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	POLR3K	ENSG00000161980.6	ENST00000293860.6:ENST00000481810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.92962	3.9439349999999997	4.95825	0.0012954	2.87508e-4	0.0136936	0.00457439
chr1	32669293	32669357	130297	0	+	0.421875	(0.42,0.455]	chr1	16090	2	CDS	CDS:UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	3.36019	3.943925	4.52766	2.44137e-5	1.58778e-6	6.30952e-4	5.89925e-5
chr20	59032219	59032251	18026292	0	-	0.59375	(0.59,1]	chr20	1527981	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP5F1E	ENSG00000124172.10	ENST00000243997.8:ENST00000395663.1:ENST00000395659.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.01792	3.943845	4.86977	0.00246014	0.00111911	0.0230058	0.0121894
chr17	1680778	1680831	16401617	0	-	0.433962	(0.42,0.455]	chr17	1334965	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000574728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	3.79103	3.94382	4.09661	2.79795e-5	8.61353e-6	7.07527e-4	2.43348e-4
chr1	196685063	196685150	640930	0	+	0.344828	(0.33,0.36]	chr1	64451	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.63456	3.9438199999999997	5.25308	0.00707461	2.94355e-5	0.0478528	6.67979e-4
chr1	171584032	171584109	537544	0	+	0.467532	(0.455,0.49]	chr1	57718	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	7	111	2	3.71105	3.94372	4.17639	3.53197e-7	3.41835e-8	1.64321e-5	2.46038e-6
chr3	184243553	184243630	4622930	0	-	0.571429	(0.53,0.59]	chr3	381721	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000485912.1:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000463495.5:ENST00000462735.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	3.84214	3.9437100000000003	4.04528	4.28524e-5	6.5494e-6	9.98851e-4	1.94116e-4
chr2	187465871	187465968	3070158	0	-	0.381443	(0.36,0.39]	chr2	271827	18	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	3.80586	3.943705	4.08155	9.62552e-6	9.85897e-7	2.93977e-4	3.94225e-5
chr11	71987015	71987111	12010000	0	+	0.395833	(0.39,0.42]	chr11	925318	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNF121	ENSG00000137522.18	ENST00000530058.5:ENST00000530655.5:ENST00000393711.7:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000528683.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1:ENST00000525176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.99507	3.943625	4.89218	0.00637824	1.6518e-4	0.0449937	0.0029267300000000002
chr7	130201849	130201929	9063509	0	-	0.525	(0.49,0.53]	chr7	692191	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	3.70364	3.943625	4.18361	1.89513e-6	3.77422e-8	7.58027e-5	2.4281e-6
chr2	38295993	38296093	2602687	0	-	0.42	(0.39,0.42]	chr2	234395	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.68267	3.94351	5.20435	0.00125229	2.91423e-5	0.0133064	7.26551e-4
chr8	21982725	21982812	9221888	0	+	0.505747	(0.49,0.53]	chr8	704967	2	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.01464	3.943275	5.87191	0.0205094	9.67449e-7	0.0991175	3.88631e-5
chr6	149793548	149793608	7481951	0	+	0.366667	(0.36,0.39]	chr6	571786	1	CDS	CDS:UTR3:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	127	2	2.33611	3.94311	5.55011	0.00124704	1e-12	0.0137762	2.25522e-10
chr11	119044372	119044464	12626406	0	-	0.478261	(0.455,0.49]	chr11	979738	3	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.9967	3.942965	4.88923	0.00650423	9.45747e-8	0.0454205	5.31584e-6
chr12	67312928	67313027	12934144	0	+	0.30303	(0.29,0.33]	chr12	1008121	2	UTR3	UTR3:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.08261	3.9429149999999997	4.80322	0.0048227	2.14303e-4	0.0365653	0.00359478
chr7	107758427	107758520	8457131	0	+	0.505376	(0.49,0.53]	chr7	646250	4	CDS	CDS:UTR3:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000415884.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.68653	3.94268	5.19883	0.00122977	6.30063e-5	0.013593	0.00124286
chr1	109327549	109327601	1219616	0	-	0.442308	(0.42,0.455]	chr1	118978	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.8515	3.942665	4.03383	0.0119089	4.24324e-5	0.0686664	8.98949e-4
chr7	34973513	34973605	8766959	0	-	0.434783	(0.42,0.455]	chr7	668564	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DPY19L1	ENSG00000173852.15	ENST00000310974.8:ENST00000638088.2:ENST00000446375.1:ENST00000462134.2:ENST00000463538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	3.8515	3.942665	4.03383	0.0119089	4.24324e-5	0.0686664	8.98949e-4
chr11	107908677	107908764	12123428	0	+	0.517241	(0.49,0.53]	chr11	933297	4	EXON_PSEUDO	EXON_PSEUDO	RP11-832N8.1	ENSG00000240652.1	ENST00000474540.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	108	2	3.00771	3.9426499999999995	4.87759	6.70462e-5	1.13027e-9	0.00142579	1.16563e-7
chr1	11285837	11285934	42471	0	+	0.56701	(0.53,0.59]	chr1	5109	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.11275	3.942485	4.77222	0.00407571	6.67251e-4	0.032143	0.00867533
chr1	26276609	26276684	108882	0	+	0.586667	(0.53,0.59]	chr1	12960	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5:ENST00000491670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.11275	3.942485	4.77222	0.00407571	6.67251e-4	0.032143	0.00867533
chr15	22903705	22903805	15159245	0	-	0.57	(0.53,0.59]	chr15	1192912	1	CDS	CDS:EXON_MRNA	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000617556.4:ENST00000610365.4:ENST00000619348.4:ENST00000619290.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	3.11275	3.942485	4.77222	0.00407571	6.67251e-4	0.032143	0.00867533
chr6	131676735	131676801	7403075	0	+	0.439394	(0.42,0.455]	chr6	567402	1	CDS	CDS:UTR3:EXON_MRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.7523	3.941995	5.13169	0.0153283	8.60227e-5	0.0828908	0.00160731
chr9	99149504	99149604	10383906	0	+	0.3	(0.29,0.33]	chr9	782310	3	UTR3	UTR3:EXON_MRNA	TGFBR1	ENSG00000106799.13	ENST00000374990.6:ENST00000374994.9:ENST00000552516.5:ENST00000549766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.62683	3.941715	4.2566	0.00303129	6.18968e-4	0.0257942	0.00822794
chr10	73072028	73072104	11568890	0	-	0.394737	(0.39,0.42]	chr10	880505	1	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	12	184	2	3.65157	3.94161	4.23165	1.54739e-7	6.37077e-11	9.16382e-6	9.12042e-9
chr5	138810045	138810145	6246824	0	+	0.56	(0.53,0.59]	chr5	486731	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	3.02054	3.9414300000000004	4.86232	0.00577011	4.57805e-4	0.0426551	0.00608573
chr7	44582046	44582106	8800259	0	-	0.583333	(0.53,0.59]	chr7	671352	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	3.02054	3.9414300000000004	4.86232	0.00577011	4.57805e-4	0.0426551	0.00608573
chr1	211571762	211571860	1478505	0	-	0.387755	(0.36,0.39]	chr1	149188	3	UTR3	UTR3:EXON_MRNA	SLC30A1	ENSG00000170385.10	ENST00000367001.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.29474	3.941105	4.58747	0.00194306	6.55819e-4	0.0185233	0.00860229
chr1	53767969	53768033	1025566	0	-	0.40625	(0.39,0.42]	chr1	106348	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr1	150747843	150747879	1290231	0	-	0.416667	(0.39,0.42]	chr1	128432	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000681357.1:ENST00000448301.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr11	43724216	43724316	11923145	0	+	0.4	(0.39,0.42]	chr11	911134	1	SS5_PROX	SS5_PROX:INTRON	RP11-472I20.4:HSD17B12	ENSG00000283341.2:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1:ENST00000527213.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr12	11663645	11663745	12733801	0	+	0.42	(0.39,0.42]	chr12	990049	131	INTRON	INTRON	ETV6	ENSG00000139083.11	ENST00000396373.9:ENST00000541426.1:ENST00000544715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr14	33925204	33925302	14572088	0	-	0.397959	(0.39,0.42]	chr14	1141857	11	UTR3	UTR3:EXON_MRNA	EGLN3	ENSG00000129521.15	ENST00000250457.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr15	89201364	89201463	15093502	0	+	0.40404	(0.39,0.42]	chr15	1187100	61	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr16	74568017	74568117	16032181	0	-	0.4	(0.39,0.42]	chr16	1287396	48	INTRON	INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr2	189561977	189562048	3082402	0	-	0.408451	(0.39,0.42]	chr2	272311	1	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr2	201272137	201272237	2311793	0	+	0.42	(0.39,0.42]	chr2	209291	1	SS3_PROX	SS3_PROX:INTRON	CASP8	ENSG00000064012.22	ENST00000264274.13:ENST00000392263.6:ENST00000432109.6:ENST00000264275.9:ENST00000471383.5:ENST00000450491.5:ENST00000392258.7:ENST00000447616.5:ENST00000358485.8:ENST00000392266.7:ENST00000413726.5:ENST00000437283.5:ENST00000490412.5:ENST00000339403.6:ENST00000323492.11:ENST00000673742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr4	128028663	128028758	5105268	0	+	0.410526	(0.39,0.42]	chr4	413960	3	CDS	CDS:UTR3:EXON_MRNA	ABHD18	ENSG00000164074.16	ENST00000398965.5:ENST00000473040.6:ENST00000444616.5:ENST00000645843.2:ENST00000388795.9:ENST00000611882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr6	158040234	158040333	7517367	0	+	0.393939	(0.39,0.42]	chr6	573643	62	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chrX	52707111	52707189	19074237	0	-	0.397436	(0.39,0.42]	chrX	1622095	1	UTR5	UTR5:EXON_MRNA	SSX2	ENSG00000241476.8	ENST00000337502.5:ENST00000336777.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73294	3.9409	4.14886	0.0190864	0.00415881	0.0958835	0.0325842
chr1	1218457	1218538	826378	0	-	0.54321	(0.53,0.59]	chr1	81963	1	CDS	CDS:UTR3:EXON_MRNA	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000478938.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	3.8773	3.940615	4.00393	0.0108084	5.13471e-6	0.064368	1.58468e-4
chr3	139369455	139369544	4479592	0	-	0.292135	(0.29,0.33]	chr3	372239	1	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	3.07782	3.94052	4.80322	2.14303e-4	4.58926e-5	0.00359478	9.56296e-4
chr3	114103343	114103438	4361551	0	-	0.610526	(0.59,1]	chr3	364067	2	EXON_PSEUDO	EXON_PSEUDO	H2BP3	ENSG00000240912.1	ENST00000465850.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	128	2	3.24044	3.9404500000000002	4.64046	1.05664e-4	3.26241e-6	0.00204601	1.08317e-4
chr14	100337061	100337131	14788528	0	-	0.528571	(0.49,0.53]	chr14	1158699	1	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000557614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	1.78308	3.940425	6.09777	0.0425234	1.87775e-7	0.167547	9.63683e-6
chr22	36281576	36281675	18497993	0	-	0.414141	(0.39,0.42]	chr22	1578077	4	UTR3	UTR3:EXON_MRNA	MYH9	ENSG00000100345.22	ENST00000216181.11	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.11822	3.94033	5.76244	0.005418	1.61725e-6	0.0409315	5.98677e-5
chr3	41234138	41234217	3432564	0	+	0.506329	(0.49,0.53]	chr3	298556	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1:ENST00000644395.1:ENST00000465552.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	78	2	3.00771	3.94017	4.87263	6.70462e-5	1.15551e-7	0.00142579	6.3314e-6
chr1	111118159	111118259	1223942	0	-	0.42	(0.39,0.42]	chr1	119635	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	57	2	2.49974	3.94003	5.38032	2.11447e-4	9.82886e-6	0.00328766	2.98194e-4
chr14	30617318	30617416	14199882	0	+	0.326531	(0.29,0.33]	chr14	1112694	9	UTR3	UTR3:EXON_MRNA	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000648008.1:ENST00000549159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.31653	3.9399450000000003	4.56336	0.00261621	8.8231e-4	0.0238929	0.0101404
chr12	50745720	50745817	12874685	0	+	0.412371	(0.39,0.42]	chr12	1000428	10	UTR3	UTR3:EXON_MRNA	DIP2B	ENSG00000066084.13	ENST00000301180.10	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr12	120721118	120721217	13117651	0	+	0.414141	(0.39,0.42]	chr12	1024038	12	UTR3	UTR3:EXON_MRNA	UNC119B	ENSG00000175970.11	ENST00000344651.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr13	98463763	98463836	14117879	0	-	0.410959	(0.39,0.42]	chr13	1105071	2	CDS	CDS:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7:ENST00000418038.5:ENST00000444574.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr13	99327448	99327547	13863864	0	+	0.40404	(0.39,0.42]	chr13	1087070	90	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr2	27328036	27328101	2569973	0	-	0.415385	(0.39,0.42]	chr2	231392	1	CDS	CDS:UTR3:EXON_MRNA	GTF3C2	ENSG00000115207.13	ENST00000264720.7:ENST00000359541.6:ENST00000457098.5:ENST00000431028.5:ENST00000495298.1:ENST00000454704.5:ENST00000415683.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr2	55268577	55268673	2668489	0	-	0.416667	(0.39,0.42]	chr2	238747	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MTIF2	ENSG00000085760.15	ENST00000403721.5:ENST00000263629.9:ENST00000446660.5:ENST00000366137.6:ENST00000441307.5:ENST00000420637.5:ENST00000417363.5:ENST00000412530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr20	10613251	10613348	17900107	0	-	0.391753	(0.39,0.42]	chr20	1514986	5	EXON_PSEUDO	EXON_PSEUDO	RP5-1099D15.1	ENSG00000235036.4	ENST00000456064.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr4	114623250	114623341	5063135	0	+	0.417582	(0.39,0.42]	chr4	411387	4	CDS	CDS:EXON_MRNA	UGT8	ENSG00000174607.11	ENST00000507710.1:ENST00000310836.11:ENST00000394511.3	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr5	94570391	94570486	6104784	0	+	0.410526	(0.39,0.42]	chr5	477805	10	EXON_PSEUDO	EXON_PSEUDO	MTCYBP35	ENSG00000251340.1	ENST00000503630.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr5	96790511	96790577	6721253	0	-	0.393939	(0.39,0.42]	chr5	517441	1	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000507859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr8	30237961	30238058	9253417	0	+	0.391753	(0.39,0.42]	chr8	708949	7	EXON_PSEUDO	EXON_PSEUDO	HSPA8P11	ENSG00000248159.1	ENST00000508840.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.93975	3.939855	3.93996	0.0105893	0.00841622	0.0644466	0.054565
chr12	122094462	122094562	13122647	0	+	0.51	(0.49,0.53]	chr12	1024773	148	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.48488	3.9394349999999996	5.39399	0.032052	1.71804e-5	0.133433	4.72485e-4
chr19	8311504	8311595	17449599	0	-	0.582418	(0.53,0.59]	chr19	1458607	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CTD-2550O8.5:NDUFA7	ENSG00000167774.2:ENSG00000267855.6	ENST00000598884.1:ENST00000593729.5:ENST00000601101.5:ENST00000595856.5:ENST00000602059.1:ENST00000301457.3:ENST00000601258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	3.0099	3.939065	4.86823	0.00600486	4.35895e-4	0.042887	0.00623608
chr6	170656429	170656528	7556949	0	+	0.585859	(0.53,0.59]	chr6	576995	160	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	3.0099	3.939065	4.86823	0.00600486	4.35895e-4	0.042887	0.00623608
chr5	80628790	80628888	6667375	0	-	0.540816	(0.53,0.59]	chr5	514708	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	3.7312	3.9388249999999996	4.14645	2.32261e-5	1.38467e-5	6.06413e-4	3.5918e-4
chr5	140567656	140567753	6255382	0	+	0.628866	(0.59,1]	chr5	487695	5	CDS	CDS:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.77418	3.9388199999999998	5.10346	0.0160729	8.40506e-4	0.0860154	0.00981548
chr14	102017156	102017225	14495518	0	+	0.521739	(0.49,0.53]	chr14	1133122	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000645114.2:ENST00000643764.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.44951	3.938705	4.4279	0.0405223	0.00196987	0.153343	0.0193972
chr17	7176423	7176518	16428462	0	-	0.515789	(0.49,0.53]	chr17	1339088	2	SS5_PROX	SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.44951	3.938705	4.4279	0.0405223	0.00196987	0.153343	0.0193972
chr19	18863437	18863524	17260751	0	+	0.517241	(0.49,0.53]	chr19	1425838	1	CDS	CDS:EXON_MRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000596842.5:ENST00000600689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.44951	3.938705	4.4279	0.0405223	0.00196987	0.153343	0.0193972
chr22	40323839	40323939	18376127	0	+	0.53	(0.49,0.53]	chr22	1563732	7	UTR3	UTR3:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.44951	3.938705	4.4279	0.0405223	0.00196987	0.153343	0.0193972
chr9	65387441	65387540	10278503	0	+	0.50505	(0.49,0.53]	chr9	773886	12	INTRON	INTRON	CH17-322D16.1	ENSG00000287329.1	ENST00000655595.1	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.44951	3.938705	4.4279	0.0405223	0.00196987	0.153343	0.0193972
chr5	10390331	10390375	5875070	0	+	0.409091	(0.39,0.42]	chr5	461936	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1:ENST00000506131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	148	2	3.37925	3.938675	4.4981	2.65754e-7	1.50425e-10	1.28917e-5	2.16987e-8
chr1	19304224	19304298	877677	0	-	0.527027	(0.49,0.53]	chr1	90628	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9:ENST00000489286.5:ENST00000481966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.7546	3.938615	4.12263	0.00591451	2.09468e-4	0.0427941	0.00327655
chr5	151795496	151795575	6299663	0	+	0.455696	(0.455,0.49]	chr5	491917	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000676590.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000678500.1:ENST00000679135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	55	2	3.77785	3.938525	4.0992	2.73975e-5	9.38535e-6	6.95757e-4	2.61344e-4
chr1	52995416	52995513	197351	0	+	0.536082	(0.53,0.59]	chr1	25156	23	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	SCP2:TUBBP10	ENSG00000116171.19:ENSG00000226147.1	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000427668.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	53	2	3.47419	3.9383500000000002	4.40251	8.75273e-4	4.48447e-6	0.0106963	1.41623e-4
chr2	196780534	196780634	3101502	0	-	0.4	(0.39,0.42]	chr2	274029	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000448087.5:ENST00000466862.1:ENST00000409364.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.88836	3.9383049999999997	4.98825	0.0102432	1.62756e-4	0.062872	0.00266622
chr19	38845852	38845914	17561173	0	-	0.516129	(0.49,0.53]	chr19	1475103	1	CDS	CDS:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1:ENST00000600741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.60116	3.937965	5.27477	0.0056515	4.14521e-5	0.0422191	8.8376e-4
chr7	127686612	127686687	8515274	0	+	0.64	(0.59,1]	chr7	649653	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1:ENST00000461056.5:ENST00000468621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	111	2	3.08707	3.9379100000000005	4.78875	8.79989e-4	1.30092e-6	0.0107294	5.00075e-5
chr6	27810384	27810484	7105137	0	+	0.61	(0.59,1]	chr6	543457	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	9	293	2	3.91405	3.9379049999999998	3.96176	3.94459e-7	1.49418e-7	2.02288e-5	7.93805e-6
chr1	11952622	11952678	45260	0	+	0.625	(0.59,1]	chr1	5731	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.03921	3.9377899999999997	5.83637	0.0371471	3.04631e-5	0.151849	6.83179e-4
chr18	36796104	36796204	17079094	0	-	0.38	(0.36,0.39]	chr18	1403215	21	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	94	2	3.77309	3.937615	4.10214	2.32805e-7	6.84831e-8	1.29879e-5	4.03931e-6
chr7	104990098	104990198	8448737	0	+	0.4	(0.39,0.42]	chr7	645186	270	INTRON	INTRON	RP11-325F22.2	ENSG00000237513.2	ENST00000671314.1:ENST00000659776.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	3.44923	3.937535	4.42584	0.00199429	0.00105208	0.0189001	0.0123035
chrX	155236228	155236297	18920340	0	+	0.362319	(0.36,0.39]	chrX	1612527	1	CDS	CDS:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.88762	3.937525	4.98743	4.35345e-4	8.82225e-5	0.005869	0.00178337
chr17	68043837	68043915	16333819	0	+	0.474359	(0.455,0.49]	chr17	1325129	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	3.59437	3.93722	4.28007	3.2026e-5	8.3464e-6	7.10499e-4	2.58924e-4
chr20	2964945	2965031	17654888	0	+	0.406977	(0.39,0.42]	chr20	1492429	2	CDS	CDS:EXON_MRNA	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.57294	3.937195	4.30145	3.67751e-5	7.39643e-6	8.00584e-4	2.35326e-4
chr12	124814201	124814269	13600519	0	-	0.426471	(0.42,0.455]	chr12	1071729	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	95	2	3.72956	3.93711	4.14466	5.95085e-7	3.07949e-7	2.84227e-5	1.46234e-5
chr7	45997627	45997716	8801857	0	-	0.47191	(0.455,0.49]	chr7	671724	2	EXON_PSEUDO	EXON_PSEUDO	FTLP15	ENSG00000233952.1	ENST00000455449.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	30	2	3.81275	3.9367900000000002	4.06083	0.0138827	3.56832e-5	0.0760883	7.81595e-4
chr2	219183021	219183119	2392461	0	+	0.418367	(0.39,0.42]	chr2	215410	5	UTR3	UTR3:EXON_MRNA	RETREG2	ENSG00000144567.11	ENST00000273048.2:ENST00000430297.7:ENST00000420189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.19588	3.936765	4.67765	0.00321212	7.04737e-4	0.0280721	0.00848325
chr8	98042750	98042775	9962828	0	-	0.32	(0.29,0.33]	chr8	751702	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000521534.1:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	116	2	3.21996	3.93673	4.6535	2.79839e-7	4.28583e-10	1.34589e-5	5.44853e-8
chr12	65240908	65240997	12928161	0	+	0.426966	(0.42,0.455]	chr12	1007637	1	CDS	CDS:EXON_MRNA	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000542032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.62315	3.936715	4.25028	0.00406761	4.234e-4	0.032143	0.00613535
chr10	124408893	124408965	11729378	0	-	0.375	(0.36,0.39]	chr10	895088	3	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	64	2	2.92197	3.936575	4.95118	1.60658e-4	5.05967e-8	0.00287058	3.11657e-6
chr10	22535048	22535146	11411100	0	-	0.316327	(0.29,0.33]	chr10	869854	3	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.80161	3.936475	5.07134	0.00415667	1.55469e-8	0.0325842	1.13331e-6
chrX	66188446	66188534	18717496	0	+	0.454545	(0.42,0.455]	chrX	1596964	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.91373	3.9360150000000003	4.9583	0.00892357	5.55326e-8	0.0567495	3.37237e-6
chr19	14087850	14087944	17478306	0	-	0.287234	[0,0.29]	chr19	1464154	1	UTR3	UTR3:EXON_MRNA	SAMD1	ENSG00000141858.12	ENST00000533683.7	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	3.83373	3.935855	4.03798	7.64187e-5	6.92632e-7	0.00160163	2.9248e-5
chr1	244708049	244708148	804432	0	+	0.323232	(0.29,0.33]	chr1	80056	24	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.23189	3.935815	4.63974	4.81181e-4	5.87177e-5	0.00677016	0.00117909
chr7	105113828	105113928	8449896	0	+	0.29	[0,0.29]	chr7	645368	6	UTR3	UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.61628	3.9357249999999997	5.25517	0.0101434	2.33041e-5	0.0626311	5.51886e-4
chr1	113976284	113976383	418238	0	+	0.383838	(0.36,0.39]	chr1	41199	29	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.84089	3.935545	5.0302	0.0128123	1.15931e-4	0.0719798	0.00204552
chr2	152659269	152659356	2944076	0	-	0.367816	(0.36,0.39]	chr2	261553	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000471167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	3.88071	3.9353550000000004	3.99	6.1616e-5	4.48476e-6	0.00133408	1.41623e-4
chr2	128180889	128180980	2060413	0	+	0.395604	(0.39,0.42]	chr2	193364	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7:ENST00000418197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	3.23174	3.9352849999999995	4.63883	5.68159e-4	2.82122e-4	0.0077844	0.00415762
chr8	86558410	86558509	9457708	0	+	0.414141	(0.39,0.42]	chr8	720297	1	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	3.23174	3.9352849999999995	4.63883	5.68159e-4	2.82122e-4	0.0077844	0.00415762
chr7	103523390	103523460	8963487	0	-	0.528571	(0.49,0.53]	chr7	686142	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	3.16986	3.93528	4.7007	3.95698e-4	4.46291e-7	0.00587341	2.00907e-5
chr1	223775050	223775147	727593	0	+	0.28866000000000003	[0,0.29]	chr1	73491	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5:ENST00000463997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.16626	3.9352650000000002	5.70427	0.00762503	1.20169e-6	0.0507443	4.6687e-5
chr14	103520215	103520310	14795321	0	-	0.536842	(0.53,0.59]	chr14	1159535	2	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5:ENST00000555039.1:ENST00000555366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	108	2	3.6295	3.935245	4.24099	1.28258e-5	2.41291e-7	3.70041e-4	1.188e-5
chr8	85336944	85337003	9920391	0	-	0.440678	(0.42,0.455]	chr8	749280	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5:ENST00000524324.5:ENST00000517618.5:ENST00000519991.5:ENST00000523712.5:ENST00000520663.5:ENST00000517590.5:ENST00000518233.5:ENST00000517429.5:ENST00000521846.5:ENST00000522579.5:ENST00000518341.5:ENST00000522814.5:ENST00000522662.5:ENST00000523858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.62856	3.934945	4.24133	0.00326918	4.02604e-4	0.0282494	0.00549837
chr9	122144340	122144378	10840114	0	-	0.447368	(0.42,0.455]	chr9	821153	1	CDS	CDS:EXON_MRNA	NDUFA8	ENSG00000119421.7	ENST00000373768.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.62856	3.934945	4.24133	0.00326918	4.02604e-4	0.0282494	0.00549837
chr9	117180977	117181065	10824698	0	-	0.522727	(0.49,0.53]	chr9	820020	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	ASTN2:RPL10P3	ENSG00000148219.18:ENSG00000230734.1	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8:ENST00000431607.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	26	2	3.4415	3.9347000000000003	4.4279	0.00196987	9.98297e-4	0.0193972	0.0111246
chr1	93904522	93904588	1175586	0	-	0.393939	(0.39,0.42]	chr1	115715	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1:ENST00000467772.1:ENST00000462183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.70591	3.93469	5.16347	0.0185716	6.48089e-5	0.0932453	0.00126536
chr17	68043099	68043187	16333811	0	+	0.465909	(0.455,0.49]	chr17	1325127	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	154	2	3.49197	3.93469	4.37741	2.05719e-6	1.56955e-10	8.10246e-5	2.01477e-8
chr7	92611567	92611666	8924955	0	-	0.272727	[0,0.29]	chr7	681136	68	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.80134	3.9346300000000003	5.06792	0.0049344	6.88295e-5	0.0379087	0.00133223
chrX	120436690	120436788	19196126	0	-	0.27551	[0,0.29]	chrX	1631971	3	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.80134	3.9346300000000003	5.06792	0.0049344	6.88295e-5	0.0379087	0.00133223
chr17	81919648	81919746	16710026	0	-	0.540816	(0.53,0.59]	chr17	1377880	15	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.47	3.9345	5.399	0.0089333	3.02387e-5	0.0567495	6.78876e-4
chr16	259968	260064	15481036	0	+	0.65625	(0.59,1]	chr16	1224268	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000438220.5:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000420500.5:ENST00000600536.1:ENST00000421000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.42639	3.934375	5.44236	0.0409084	2.02004e-4	0.163285	0.00317801
chr17	32225110	32225204	16199278	0	+	0.319149	(0.29,0.33]	chr17	1308042	5	UTR3	UTR3:EXON_MRNA:INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	3.33708	3.933815	4.53055	2.90171e-5	2.01371e-6	6.60417e-4	7.96005e-5
chr11	108229502	108229553	12587167	0	-	0.411765	(0.39,0.42]	chr11	976166	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206967.1	ENST00000384240.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	23	2	2.86368	3.933795	5.00391	0.0101619	9.12714e-5	0.0627153	0.00182992
chr16	70276965	70277059	15997142	0	-	0.446809	(0.42,0.455]	chr16	1284682	1	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	3.52659	3.933655	4.34072	6.87022e-4	1.30212e-7	0.00876781	7.01492e-6
chr16	400506	400589	15481512	0	+	0.542169	(0.53,0.59]	chr16	1224422	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000620944.4:ENST00000621774.4:ENST00000219479.7:ENST00000448828.5:ENST00000444498.5:ENST00000460297.1:ENST00000433358.5:ENST00000468031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	130	2	3.05264	3.93361	4.81458	1.96889e-5	2.81239e-9	5.29277e-4	2.58208e-7
chr2	47373967	47374048	1784355	0	+	0.506173	(0.49,0.53]	chr2	172392	3	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000474691.1:ENST00000419334.1:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	3.0763	3.93358	4.79086	4.20783e-4	4.23786e-5	0.00611538	8.98949e-4
chr1	109275561	109275656	398428	0	+	0.294737	(0.29,0.33]	chr1	38725	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CELSR2	ENSG00000143126.8	ENST00000271332.4:ENST00000498157.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chr1	222650792	222650847	724184	0	+	0.309091	(0.29,0.33]	chr1	73005	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000354906.7:ENST00000340535.11:ENST00000495210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chr2	36848458	36848558	2594598	0	-	0.31	(0.29,0.33]	chr2	233508	109	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chr2	190692084	190692182	2279505	0	+	0.326531	(0.29,0.33]	chr2	206861	19	UTR3	UTR3:EXON_MRNA	NAB1	ENSG00000138386.17	ENST00000337386.10	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chr20	35949488	35949586	17771403	0	+	0.316327	(0.29,0.33]	chr20	1501375	20	UTR3	UTR3:EXON_MRNA	PHF20	ENSG00000025293.17	ENST00000374012.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chr22	16658307	16658407	18286302	0	+	0.33	(0.29,0.33]	chr22	1551704	46	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chr4	159330233	159330333	5200586	0	+	0.31	(0.29,0.33]	chr4	419739	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAPGEF2	ENSG00000109756.9	ENST00000644474.1:ENST00000644902.1:ENST00000264431.8:ENST00000513816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.62312	3.933495	4.24387	0.0222826	0.00263476	0.104593	0.0239118
chrX	300217	300315	18549164	0	+	0.55102	(0.53,0.59]	chrX	1585413	10	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	3.58086	3.9334499999999997	4.28604	9.59485e-6	5.24546e-6	2.93255e-4	1.60997e-4
chr12	124343078	124343152	13597819	0	-	0.675676	(0.59,1]	chr12	1071450	2	CDS	CDS:EXON_MRNA	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000404121.6:ENST00000356219.7:ENST00000429285.6	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.44238	3.9333	4.42422	0.00158239	1.17291e-5	0.0167793	3.12994e-4
chr16	85805732	85805772	15798363	0	+	0.4	(0.39,0.42]	chr16	1257151	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000570123.5:ENST00000568339.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000561569.5:ENST00000566405.5:ENST00000564544.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	3.56097	3.933135	4.3053	6.12149e-4	7.30538e-6	0.00818575	2.13219e-4
chr2	33365332	33365417	1722505	0	+	0.447059	(0.42,0.455]	chr2	168822	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.46349	3.933125	4.40276	0.0017618	9.0025e-4	0.0180053	0.0102618
chr2	105361083	105361182	2821368	0	-	0.424242	(0.42,0.455]	chr2	251840	35	UTR3	UTR3:EXON_MRNA	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.46349	3.933125	4.40276	0.0017618	9.0025e-4	0.0180053	0.0102618
chr11	60919861	60919930	11967023	0	+	0.57971	(0.53,0.59]	chr11	916454	2	CDS	CDS:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	3.29875	3.932975	4.5672	0.00191422	1.40998e-6	0.018324	5.86085e-5
chr12	130875881	130875926	13154859	0	+	0.533333	(0.53,0.59]	chr12	1027986	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	3.30943	3.932915	4.5564	0.0018255	1.54434e-6	0.0183913	5.75816e-5
chr1	196715680	196715769	641240	0	+	0.41573	(0.39,0.42]	chr1	64478	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.22662	3.9327249999999996	4.63883	0.00257296	5.68159e-4	0.0229363	0.0077844
chr13	41385018	41385100	13989920	0	-	0.47561	(0.455,0.49]	chr13	1097268	4	EXON_PSEUDO	EXON_PSEUDO	TUBBP2	ENSG00000214222.2	ENST00000454403.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	98	2	3.8173	3.932505	4.04771	7.60804e-7	1.16836e-7	3.51585e-5	6.389e-6
chr16	81615505	81615605	15771106	0	+	0.45	(0.42,0.455]	chr16	1255471	37	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.46169	3.932225	4.40276	0.03884	0.0017618	0.149227	0.0180053
chr17	62426565	62426654	16308621	0	+	0.449438	(0.42,0.455]	chr17	1322751	4	CDS	CDS:EXON_MRNA	METTL2A	ENSG00000087995.16	ENST00000333483.14:ENST00000616852.1:ENST00000311506.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.46169	3.932225	4.40276	0.03884	0.0017618	0.149227	0.0180053
chr9	123516099	123516199	10845283	0	-	0.44	(0.42,0.455]	chr9	821758	301	INTRON	INTRON	DENND1A	ENSG00000119522.16	ENST00000373624.6:ENST00000473039.5:ENST00000373620.7:ENST00000394215.6:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.46169	3.932225	4.40276	0.03884	0.0017618	0.149227	0.0180053
chr17	38919376	38919476	16218418	0	+	0.63	(0.59,1]	chr17	1310821	7	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.99438	3.932075	4.86977	0.00776449	0.00246014	0.050813	0.0230058
chrX	123514472	123514572	18850543	0	+	0.6	(0.59,1]	chrX	1606058	1	EXON_PSEUDO	EXON_PSEUDO	H3P47	ENSG00000179101.5	ENST00000416267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	39	2	2.9228	3.9320500000000003	4.9413	0.00981698	0.00191468	0.0612992	0.0190905
chr1	108943885	108943936	1218003	0	-	0.215686	[0,0.29]	chr1	118667	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6:ENST00000676391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.50224	3.932035	4.36183	0.00170062	7.95529e-4	0.01759	0.009356
chr3	156548934	156549003	4538725	0	-	0.42029	(0.42,0.455]	chr3	376090	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	207	2	2.1708	3.93195	5.6931	0.001598	1e-12	0.0169168	2.25522e-10
chr4	83461484	83461582	5500205	0	-	0.367347	(0.36,0.39]	chr4	440770	21	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.63521	3.931825	5.22844	0.00633242	4.38129e-9	0.0446708	3.79596e-7
chr13	51933065	51933164	14030935	0	-	0.434343	(0.42,0.455]	chr13	1100362	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATP7B	ENSG00000123191.16	ENST00000634519.1:ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000673867.1:ENST00000673923.1:ENST00000448424.7:ENST00000673696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	3.06293	3.9317849999999996	4.80064	0.00492128	3.0479e-4	0.0366648	0.00472028
chr16	74453166	74453266	16030999	0	-	0.51	(0.49,0.53]	chr16	1287252	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.23006	3.93172	4.63338	0.00253719	9.56909e-4	0.0233955	0.010724
chr18	6462816	6462874	17007690	0	-	0.517241	(0.49,0.53]	chr18	1397497	1	EXON_PSEUDO	EXON_PSEUDO:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	25	2	3.23006	3.93172	4.63338	0.00253719	9.56909e-4	0.0233955	0.010724
chr21	44809057	44809118	18277304	0	-	0.491803	(0.49,0.53]	chr21	1550230	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.23006	3.93172	4.63338	0.00253719	9.56909e-4	0.0233955	0.010724
chr3	33142743	33142842	3397819	0	+	0.494949	(0.49,0.53]	chr3	295508	4	UTR3	UTR3:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.23006	3.93172	4.63338	0.00253719	9.56909e-4	0.0233955	0.010724
chrX	49174784	49174874	18693792	0	+	0.533333	(0.53,0.59]	chrX	1594681	2	UTR3	UTR3:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.9246	3.931715	4.93883	1.13965e-4	8.67024e-8	0.00217669	4.94425e-6
chr19	40623603	40623667	17330476	0	+	0.578125	(0.53,0.59]	chr19	1436052	1	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000318809.11:ENST00000597816.5:ENST00000622107.4:ENST00000595665.1:ENST00000622457.1:ENST00000594116.1:ENST00000598178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.99511	3.9316699999999996	4.86823	9.46531e-4	4.35895e-4	0.010681	0.00623608
chr6	110893900	110894000	7331121	0	+	0.39	(0.36,0.39]	chr6	563689	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1:ENST00000465404.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	2.92949	3.9316500000000003	4.93381	1.90009e-4	6.0267e-5	0.00302753	0.00131045
chr19	9828836	9828874	17223495	0	+	0.5	(0.49,0.53]	chr19	1418094	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	UBL5	ENSG00000198258.11	ENST00000358666.7:ENST00000590068.1:ENST00000589960.5:ENST00000593087.1:ENST00000586895.6:ENST00000588141.1:ENST00000589372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	3.11892	3.93165	4.74438	0.00398244	5.91752e-4	0.0322851	0.00743488
chr2	27041217	27041313	1690683	0	+	0.510417	(0.49,0.53]	chr2	165370	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000460665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	3.76099	3.9312050000000003	4.10142	2.00194e-4	8.9797e-7	0.0034021	3.64922e-5
chr10	11887346	11887446	11369021	0	-	0.55	(0.53,0.59]	chr10	866996	1	SS5_PROX	SS5_PROX:INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.90978	3.9310549999999997	4.95233	0.00857883	3.02711e-4	0.0552386	0.00439897
chr12	54402179	54402254	13343789	0	-	0.653333	(0.59,1]	chr12	1049781	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000552583.1:ENST00000551564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	3.41536	3.9310350000000005	4.44671	0.00931497	0.00164655	0.0586162	0.0163443
chr12	113384184	113384265	13101691	0	+	0.62963	(0.59,1]	chr12	1022422	2	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.41536	3.9310350000000005	4.44671	0.00931497	0.00164655	0.0586162	0.0163443
chrX	101391035	101391043	18786333	0	+	0.625	(0.59,1]	chrX	1601404	1	CDS	CDS:UTR5:EXON_MRNA	RPL36A:RPL36A-HNRNPH2	ENSG00000241343.10:ENSG00000257529.5	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000409338.5:ENST00000553110.8:ENST00000465340.5:ENST00000491851.5:ENST00000409170.3:ENST00000372849.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	3.41536	3.9310350000000005	4.44671	0.00931497	0.00164655	0.0586162	0.0163443
chr1	9733473	9733546	854646	0	-	0.60274	(0.59,1]	chr1	86250	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr1	112689925	112690011	411669	0	+	0.651163	(0.59,1]	chr1	40581	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOV10	ENSG00000155363.18	ENST00000413052.6:ENST00000369645.5:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr1	156294163	156294236	1313987	0	-	0.657534	(0.59,1]	chr1	133376	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	GLMP	ENSG00000198715.13	ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000476177.6:ENST00000497955.1:ENST00000368264.1:ENST00000479084.1:ENST00000484214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr1	219928070	219928160	1510351	0	-	0.711111	(0.59,1]	chr1	150945	4	CDS	CDS:EXON_MRNA:INTRON	SLC30A10	ENSG00000196660.11	ENST00000484239.5:ENST00000366926.4:ENST00000356609.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr17	39673186	39673255	16536396	0	-	0.695652	(0.59,1]	chr17	1354134	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	PGAP3	ENSG00000161395.14	ENST00000579146.5:ENST00000300658.9:ENST00000378011.8:ENST00000309862.10:ENST00000619169.4:ENST00000429199.6:ENST00000577337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr19	18031443	18031537	17256837	0	+	0.606383	(0.59,1]	chr19	1424994	9	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr19	35267644	35267734	17304114	0	+	0.7	(0.59,1]	chr19	1430698	7	CDS	CDS:EXON_MRNA	LSR	ENSG00000105699.17	ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr2	64989828	64989913	1853042	0	+	0.682353	(0.59,1]	chr2	175806	2	CDS	CDS:EXON_MRNA:INTRON	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr20	56477054	56477124	17835127	0	+	0.642857	(0.59,1]	chr20	1507989	2	CDS	CDS:EXON_MRNA	RTF2	ENSG00000022277.13	ENST00000023939.8:ENST00000395881.7:ENST00000357348.10:ENST00000449062.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr5	5464327	5464427	5859077	0	+	0.61	(0.59,1]	chr5	460844	40	CDS	CDS:EXON_MRNA	ICE1	ENSG00000164151.12	ENST00000296564.9	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr5	13638010	13638103	6459169	0	-	0.612903	(0.59,1]	chr5	502488	2	EXON_PSEUDO	EXON_PSEUDO	CTC-232H10.1	ENSG00000243744.2	ENST00000473590.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr9	121300126	121300226	10447931	0	+	0.63	(0.59,1]	chr9	786681	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GSN	ENSG00000148180.21	ENST00000373823.7:ENST00000373808.8:ENST00000432226.7:ENST00000477863.5:ENST00000449733.7:ENST00000483960.5:ENST00000394353.7:ENST00000477104.2:ENST00000545652.6:ENST00000373818.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chrX	54815498	54815582	18705072	0	+	0.595238	(0.59,1]	chrX	1596191	4	CDS	CDS:EXON_MRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chrX	153960324	153960414	19275710	0	-	0.6	(0.59,1]	chrX	1637954	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4:ENST00000461098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.84557	3.93051	4.01545	0.0410704	0.0251889	0.163285	0.114168
chr19	10293779	10293861	17224728	0	+	0.682927	(0.59,1]	chr19	1418552	2	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	3.51608	3.9304750000000004	4.34487	0.0123678	0.00108676	0.0705839	0.0118659
chr10	73772954	73773041	11115900	0	+	0.678161	(0.59,1]	chr10	845936	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUT11	ENSG00000196968.11	ENST00000372841.8:ENST00000394790.2:ENST00000465695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr11	66437103	66437183	12424410	0	-	0.6	(0.59,1]	chr11	964690	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MRPL11	ENSG00000174547.13	ENST00000310999.11:ENST00000430466.6:ENST00000524576.5:ENST00000528272.1:ENST00000329819.4:ENST00000534488.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr11	72099110	72099184	12447991	0	-	0.594595	(0.59,1]	chr11	967427	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAMTOR1	ENSG00000149357.10	ENST00000545249.5:ENST00000535107.5:ENST00000278671.10:ENST00000544594.5:ENST00000538404.1:ENST00000535872.1:ENST00000539797.5:ENST00000541403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr12	6620412	6620504	13187590	0	-	0.728261	(0.59,1]	chr12	1032446	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LPAR5	ENSG00000184574.10	ENST00000329858.9:ENST00000431922.1:ENST00000540335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr16	261448	261514	15481054	0	+	0.681818	(0.59,1]	chr16	1224278	2	CDS	CDS:EXON_MRNA	FAM234A	ENSG00000167930.17	ENST00000301679.7:ENST00000666018.1:ENST00000653392.1:ENST00000659283.1:ENST00000654053.1:ENST00000399932.8:ENST00000453430.5:ENST00000449945.5:ENST00000420046.5:ENST00000301678.7:ENST00000600536.1:ENST00000468354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr17	7260859	7260959	16429314	0	-	0.61	(0.59,1]	chr17	1339395	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RP1-4G17.5:CLDN7	ENSG00000262302.1:ENSG00000181885.18	ENST00000577138.1:ENST00000360325.11:ENST00000538261.7:ENST00000397317.8:ENST00000574070.5:ENST00000575313.1:ENST00000571881.2:ENST00000571932.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr19	1047519	1047586	17190952	0	+	0.701493	(0.59,1]	chr19	1411468	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000533574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr19	38831403	38831479	17561006	0	-	0.618421	(0.59,1]	chr19	1475050	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECH1:AC104534.3	ENSG00000104823.9:ENSG00000268083.5	ENST00000221418.9:ENST00000601778.5:ENST00000598707.5:ENST00000594164.5:ENST00000600178.5:ENST00000601060.5:ENST00000598316.5:ENST00000595470.1:ENST00000594769.5:ENST00000602021.1:ENST00000596118.1:ENST00000597205.1:ENST00000597805.1:ENST00000601094.5:ENST00000595567.1:ENST00000602115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr2	27242052	27242123	1691777	0	+	0.661972	(0.59,1]	chr2	165797	3	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr20	32230899	32230980	17752890	0	+	0.617284	(0.59,1]	chr20	1498577	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr4	173370953	173371029	5233776	0	+	0.684211	(0.59,1]	chr4	421253	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAP30	ENSG00000164105.4	ENST00000504618.1:ENST00000296504.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr6	30688309	30688396	7658941	0	-	0.597701	(0.59,1]	chr6	584179	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr7	4764558	4764658	8109604	0	+	0.76	(0.59,1]	chr7	619657	22	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr7	44114884	44114945	8796670	0	-	0.606557	(0.59,1]	chr7	670766	1	CDS	CDS:EXON_MRNA	POLD2	ENSG00000106628.12	ENST00000610533.6:ENST00000406581.6:ENST00000489883.1:ENST00000223361.7:ENST00000452185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr8	22138638	22138688	9750679	0	-	0.68	(0.59,1]	chr8	737163	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chrX	49174671	49174694	18693790	0	+	0.695652	(0.59,1]	chrX	1594680	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chrX	152701777	152701872	18912174	0	+	0.652632	(0.59,1]	chrX	1610469	1	UTR3	UTR3:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.87333	3.93042	3.98751	0.0348991	0.0301044	0.141505	0.129773
chr22	37870261	37870347	18364602	0	+	0.453488	(0.42,0.455]	chr22	1562185	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000464790.1:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	3.71365	3.93035	4.14705	2.63375e-4	2.1071e-5	0.00427022	5.06044e-4
chr10	124401782	124401839	11729296	0	-	0.508772	(0.49,0.53]	chr10	895054	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1:ENST00000467675.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	3.36227	3.9303	4.49833	2.26725e-5	1.88388e-6	5.39086e-4	7.53959e-5
chr1	219980755	219980806	1510790	0	-	0.568627	(0.53,0.59]	chr1	150990	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	3.08832	3.93027	4.77222	6.67251e-4	4.03289e-5	0.00867533	8.67021e-4
chrX	154358983	154359068	19278080	0	-	0.6	(0.59,1]	chrX	1638306	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.69477	3.930265	5.16576	0.020208	6.55716e-4	0.0978331	0.0080931
chr16	85806737	85806774	15798375	0	+	0.567568	(0.53,0.59]	chr16	1257156	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000568339.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000561569.5:ENST00000566405.5:ENST00000564544.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	3.8188	3.930045	4.04129	1.54941e-4	1.5886e-6	0.0028049	5.89925e-5
chr10	22683036	22683136	11412600	0	-	0.29	[0,0.29]	chr10	869940	208	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.42058	3.9298	5.43902	0.00490744	4.82253e-6	0.0366648	1.6551e-4
chr1	205717187	205717286	1462027	0	-	0.313131	(0.29,0.33]	chr1	147460	45	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	3.25593	3.92962	4.60331	1.29962e-5	1.13994e-6	3.41811e-4	4.91686e-5
chr4	128862945	128863044	5109886	0	+	0.565657	(0.53,0.59]	chr4	414266	8	UTR3	UTR3:EXON_MRNA:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	5	116	2	3.39705	3.929395	4.46174	1.10308e-4	4.05035e-9	0.00211768	3.54426e-7
chr6	7295383	7295433	7586950	0	-	0.36	(0.33,0.36]	chr6	578704	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.91864	3.9293050000000003	3.93997	9.37165e-5	3.41395e-6	0.00186979	1.12474e-4
chr1	6199561	6199573	842436	0	-	0.583333	(0.53,0.59]	chr1	84906	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RPL22	ENSG00000116251.11	ENST00000234875.9:ENST00000480661.1:ENST00000497965.5:ENST00000471204.5:ENST00000462296.5:ENST00000465335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.82407	3.9293	4.03453	0.0179666	4.6e-5	0.0918323	9.56296e-4
chr6	118894413	118894513	7358572	0	+	0.5	(0.49,0.53]	chr6	565247	1	CDS_START	CDS_START:CDS:EXON_MRNA	ASF1A	ENSG00000111875.8	ENST00000229595.6:ENST00000511766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.8681	3.92922	4.99034	0.00175299	1.6002e-4	0.0171299	0.00286408
chr19	12560312	12560405	17236704	0	+	0.451613	(0.42,0.455]	chr19	1420584	9	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	2.57051	3.9291650000000002	5.28782	0.0265466	3.65299e-5	0.120071	7.95843e-4
chr21	18857877	18857977	18064949	0	+	0.43	(0.42,0.455]	chr21	1532462	2	EXON_PSEUDO	EXON_PSEUDO	PPIAP22	ENSG00000198618.5	ENST00000358455.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	53	2	3.50825	3.9290599999999998	4.34987	5.86898e-5	5.55486e-6	0.00129243	1.68903e-4
chr3	98581406	98581458	4319553	0	-	0.442308	(0.42,0.455]	chr3	360259	1	CDS	CDS:EXON_MRNA	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2:ENST00000510489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.8096	3.92905	5.0485	0.00253237	2.60143e-8	0.0233955	1.76574e-6
chr2	63594487	63594586	1850007	0	+	0.424242	(0.42,0.455]	chr2	175404	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000485155.1:ENST00000436321.5:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.42938	3.929035	5.42869	0.0045028	1.60756e-5	0.0349711	4.07445e-4
chr12	7133070	7133146	12717191	0	+	0.539474	(0.53,0.59]	chr12	987651	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	CLSTN3	ENSG00000139182.15	ENST00000541953.5:ENST00000266546.11:ENST00000541667.5:ENST00000545663.5:ENST00000535452.5:ENST00000534830.5:ENST00000539982.5:ENST00000537408.1:ENST00000538933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.89916	3.928705	4.95825	0.00890406	2.87508e-4	0.0565003	0.00457439
chr2	43224989	43225085	2618854	0	-	0.708333	(0.59,1]	chr2	235740	7	CDS	CDS:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.06258	3.92854	4.7945	0.00616167	0.0031766	0.0438642	0.0279054
chr1	149886917	149886974	464894	0	+	0.385965	(0.36,0.39]	chr1	46813	1	UTR5	UTR5:EXON_MRNA	H2AC20	ENSG00000184260.6	ENST00000331380.4	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	3.56246	3.928375	4.29429	5.49224e-6	1.21972e-8	1.67232e-4	1.00619e-6
chr15	65571547	65571600	14980105	0	+	0.45283	(0.42,0.455]	chr15	1177590	1	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	3.67296	3.9283349999999997	4.18371	2.43592e-6	4.32793e-7	8.48998e-5	2.18091e-5
chr15	41279488	41279588	14885226	0	+	0.42	(0.39,0.42]	chr15	1169243	2	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000560411.5:ENST00000392151.6:ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	3.8315	3.92829	4.02508	7.07508e-6	1.39129e-7	2.27834e-4	7.42875e-6
chr4	176327219	176327277	5242209	0	+	0.310345	(0.29,0.33]	chr4	421861	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1:ENST00000507001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	52	2	2.85656	3.92827	4.99998	9.79425e-4	2.93757e-8	0.0116574	1.96184e-6
chr1	230988379	230988439	751320	0	+	0.316667	(0.29,0.33]	chr1	76359	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.63813	3.9282449999999995	5.21836	0.00803229	3.15783e-5	0.0528968	7.02218e-4
chr4	158241508	158241606	5192728	0	+	0.44898	(0.42,0.455]	chr4	419263	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM144	ENSG00000164124.11	ENST00000296529.11:ENST00000511532.5:ENST00000503404.5:ENST00000512272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.8096	3.9282000000000004	5.0468	0.00253237	1.33918e-4	0.0233955	0.00229039
chr7	100629317	100629372	8952252	0	-	0.6	(0.59,1]	chr7	684179	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	96	2	2.9891200000000002	3.92812	4.86712	0.00823979	7.89754e-7	0.0540283	3.26923e-5
chr4	176331853	176331951	5242260	0	+	0.336735	(0.33,0.36]	chr4	421869	37	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.02394	3.9279599999999997	4.83198	8.89743e-4	1.88689e-4	0.0102057	0.0032588
chr3	33018504	33018561	4111157	0	-	0.491228	(0.49,0.53]	chr3	343445	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5:ENST00000467571.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	3.23006	3.9279	4.62574	0.00253719	7.86745e-7	0.0233955	3.25904e-5
chr4	87891842	87891940	4942234	0	+	0.479592	(0.455,0.49]	chr4	406011	1	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	70	2	3.76882	3.9278399999999998	4.08686	1.00626e-5	9.7689e-7	3.03291e-4	3.91836e-5
chr1	145306302	145306390	1266271	0	-	0.488636	(0.455,0.49]	chr1	124221	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF20	ENSG00000162825.16	ENST00000392971.6:ENST00000369373.9:ENST00000622803.4:ENST00000594479.7:ENST00000620821.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.69344	3.9277949999999997	5.16215	0.0176068	5.04348e-5	0.0925619	0.00113788
chr21	29326725	29326820	18089880	0	+	0.378947	(0.36,0.39]	chr21	1533699	8	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	3.48145	3.9277750000000005	4.3741	4.74881e-6	2.22295e-6	1.63715e-4	7.83144e-5
chr18	3277937	3278024	16729915	0	+	0.402299	(0.39,0.42]	chr18	1380136	1	UTR3	UTR3:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	13	143	2	3.09116	3.9275399999999996	4.76392	3.80653e-7	2.25518e-9	1.7481e-5	2.31473e-7
chr19	36145975	36146054	17308797	0	+	0.518987	(0.49,0.53]	chr19	1432243	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000592354.5:ENST00000586963.1:ENST00000589162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	4	76	2	3.62647	3.9273949999999997	4.22832	2.59929e-5	3.3186e-7	6.68294e-4	1.5646e-5
chr4	73147336	73147432	5466710	0	-	0.4375	(0.42,0.455]	chr4	437872	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1:ENST00000639793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.94263	3.9273800000000003	4.91213	0.00766873	1.75074e-4	0.0503696	0.00306313
chr8	47969883	47969970	9316215	0	+	0.413793	(0.39,0.42]	chr8	713558	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000518680.1:ENST00000517709.1:ENST00000648554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	1.63008	3.9273049999999996	6.22453	0.0358647	5.19291e-8	0.147298	3.1902e-6
chr3	193695770	193695867	3982892	0	+	0.360825	(0.36,0.39]	chr3	335206	13	UTR3	UTR3:EXON_MRNA	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000643329.1:ENST00000646793.1:ENST00000645553.1:ENST00000642593.1:ENST00000644629.1:ENST00000646544.1:ENST00000495261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.02397	3.927245	4.83052	0.00674398	3.15227e-4	0.0461258	0.00452711
chrX	71059344	71059442	19106523	0	-	0.377551	(0.36,0.39]	chrX	1625280	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SNX12	ENSG00000147164.12	ENST00000622259.4:ENST00000483560.1:ENST00000374274.8:ENST00000622277.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.02397	3.927245	4.83052	0.00674398	3.15227e-4	0.0461258	0.00452711
chr1	183626243	183626342	1404920	0	-	0.313131	(0.29,0.33]	chr1	142115	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.21455	3.927145	4.63974	0.00283988	4.81181e-4	0.0245061	0.00677016
chr9	125307833	125307933	10461188	0	+	0.33	(0.29,0.33]	chr9	788036	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GAPVD1	ENSG00000165219.22	ENST00000497580.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000265956.8:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.21455	3.927145	4.63974	0.00283988	4.81181e-4	0.0245061	0.00677016
chr6	43522908	43523004	7708064	0	-	0.447917	(0.42,0.455]	chr6	591455	7	UTR3	UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.17397	3.92689	4.67981	0.0031821	5.38444e-4	0.0267094	0.00744072
chr1	159918403	159918502	1326671	0	-	0.565657	(0.53,0.59]	chr1	135579	4	UTR3	UTR3:EXON_MRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9	protein_coding	protein_coding	protein_coding	protein_coding	35	616	2	3.45576	3.9268400000000003	4.39792	1.34822e-9	1e-12	1.48215e-7	2.25522e-10
chr22	39017765	39017834	18368438	0	+	0.492754	(0.49,0.53]	chr22	1562841	1	CDS	CDS:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	3.8233	3.92682	4.03034	1.44192e-4	4.26396e-5	0.00242438	9.97006e-4
chr13	29519497	29519549	13945275	0	-	0.519231	(0.49,0.53]	chr13	1094572	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.90194	3.9267700000000003	3.9516	9.11374e-5	6.96459e-5	0.00182992	0.0013446
chr11	119089081	119089131	12161968	0	+	0.46	(0.455,0.49]	chr11	937706	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000536185.5:ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000543821.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.49033	3.9267	4.36307	0.00218641	7.92678e-4	0.0208941	0.00933379
chr1	28466574	28466671	116724	0	+	0.57732000000000006	(0.53,0.59]	chr1	14227	3	CDS	CDS:UTR3:EXON_MRNA	PHACTR4	ENSG00000204138.13	ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.8188	3.926665	4.03453	1.54941e-4	4.6e-5	0.0028049	9.56296e-4
chr16	18788062	18788085	15877017	0	-	0.521739	(0.49,0.53]	chr16	1269277	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RPS15A:RP11-1035H13.3	ENSG00000134419.15:ENSG00000260342.2	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000565420.5:ENST00000569083.1:ENST00000567078.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	194	2	3.24051	3.926475	4.61244	1.88184e-6	1.53392e-11	7.53959e-5	2.55811e-9
chr3	9837931	9838015	4030853	0	-	0.559524	(0.53,0.59]	chr3	338268	2	UTR3	UTR3:EXON_MRNA	RPUSD3	ENSG00000156990.14	ENST00000383820.9:ENST00000433535.6:ENST00000423108.5:ENST00000464783.1:ENST00000466141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	3.49159	3.9264599999999996	4.36133	6.29049e-5	5.91026e-6	0.00135218	1.77972e-4
chr7	130203787	130203846	9063531	0	-	0.38983	(0.36,0.39]	chr7	692201	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000471985.4:ENST00000471077.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.46176	3.926405	5.39105	0.00365867	7.73826e-6	0.0299719	2.43421e-4
chr6	10749621	10749698	7048649	0	+	0.467532	(0.455,0.49]	chr6	539780	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000475942.5:ENST00000461342.5:ENST00000492297.5:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5:ENST00000478732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	3.07942	3.9263	4.77318	4.7888e-4	1.46687e-4	0.00628636	0.0026854
chr20	21755269	21755350	17736312	0	+	0.506173	(0.49,0.53]	chr20	1496668	1	EXON_PSEUDO	EXON_PSEUDO	RPL41P1	ENSG00000227063.5	ENST00000484902.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	84	2	3.70429	3.926265	4.14824	2.04708e-5	3.86335e-7	5.45523e-4	1.76791e-5
chr3	48468909	48468982	4167348	0	-	0.534247	(0.53,0.59]	chr3	348995	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	66	2	3.29588	3.92614	4.5564	1.96478e-4	1.54434e-6	0.00335505	5.75816e-5
chr17	4944570	4944658	16094336	0	+	0.579545	(0.53,0.59]	chr17	1294894	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000570492.5:ENST00000575400.5:ENST00000572382.5:ENST00000576965.1:ENST00000575524.1:ENST00000574548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.65894	3.92591	5.19288	0.0193255	9.22873e-5	0.0943643	0.0016906
chr17	7503722	7503791	16105199	0	+	0.550725	(0.53,0.59]	chr17	1296759	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000574158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.65894	3.92591	5.19288	0.0193255	9.22873e-5	0.0943643	0.0016906
chr2	85327390	85327488	2770187	0	-	0.55102	(0.53,0.59]	chr2	245656	10	CDS	CDS:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.65894	3.92591	5.19288	0.0193255	9.22873e-5	0.0943643	0.0016906
chr4	176324180	176324257	5242176	0	+	0.233766	[0,0.29]	chr4	421855	1	CDS	CDS:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	43	2	2.41258	3.9258	5.43902	4.15137e-4	4.82253e-6	0.00564039	1.6551e-4
chr17	3824280	3824375	16413304	0	-	0.273684	[0,0.29]	chr17	1336469	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	3.48582	3.9256200000000003	4.36542	2.60277e-5	4.63077e-6	6.68941e-4	1.453e-4
chr19	18903272	18903372	17501179	0	-	0.72	(0.59,1]	chr19	1468465	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000595984.5:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	64	2	2.65415	3.9253150000000003	5.19648	0.00171847	7.35336e-4	0.0168227	0.00921643
chr10	74105277	74105353	11117512	0	+	0.486842	(0.455,0.49]	chr10	846275	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.08961	3.925045	4.76048	0.00445157	3.99985e-4	0.0340751	0.00588767
chr12	4097844	4097942	12704109	0	+	0.489796	(0.455,0.49]	chr12	985492	5	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	3.08961	3.925045	4.76048	0.00445157	3.99985e-4	0.0340751	0.00588767
chr16	58525988	58526063	15966279	0	-	0.426667	(0.42,0.455]	chr16	1281070	1	CDS	CDS:UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	79	2	2.98822	3.924935	4.86165	2.95027e-5	9.80024e-8	6.69242e-4	6.13979e-6
chr21	33553307	33553406	18101190	0	+	0.575758	(0.53,0.59]	chr21	1534527	27	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.45052	3.92476	5.399	0.00355092	3.02387e-5	0.0300049	6.78876e-4
chr2	85320094	85320193	2770111	0	-	0.59596	(0.59,1]	chr2	245643	22	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.71222	3.924505	5.13679	0.00398753	9.28022e-4	0.031888	0.0111748
chr16	15037156	15037254	15562407	0	+	0.612245	(0.59,1]	chr16	1232374	10	UTR3	UTR3:EXON_MRNA:INTRON	PDXDC1	ENSG00000179889.19	ENST00000535621.6:ENST00000396410.9:ENST00000570001.5:ENST00000569715.5:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	3.30708	3.924455	4.54183	0.0070583	0.00252451	0.0478044	0.0226777
chr19	40623667	40623732	17330477	0	+	0.584615	(0.53,0.59]	chr19	1436052	2	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597816.5:ENST00000622457.1:ENST00000594116.1:ENST00000598178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.90978	3.9243050000000004	4.93883	0.00857883	8.67024e-8	0.0552386	4.94425e-6
chr10	73378966	73379023	11571435	0	-	0.54386	(0.53,0.59]	chr10	880863	2	CDS	CDS:EXON_MRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.515	3.9242550000000005	5.33351	0.0292633	4.35359e-5	0.129773	0.00091744700000000005
chr16	84745484	84745578	15790687	0	+	0.56383	(0.53,0.59]	chr16	1256672	9	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.515	3.9242550000000005	5.33351	0.0292633	4.35359e-5	0.129773	0.00091744700000000005
chr14	21230318	21230366	14520717	0	-	0.395833	(0.39,0.42]	chr14	1137251	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	3.76141	3.9242150000000002	4.08702	2.14058e-4	3.01232e-5	0.00359478	6.78876e-4
chr13	46147005	46147103	14009818	0	-	0.591837	(0.59,1]	chr13	1098530	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.59461	3.9242049999999997	5.2538	0.0259455	5.85045e-4	0.117079	0.00793559
chr1	110021876	110021974	401924	0	+	0.418367	(0.39,0.42]	chr1	39336	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	3.35466	3.92395	4.49324	0.00108192	1.40185e-4	0.0124943	0.00236775
chr8	30578747	30578833	9780931	0	-	0.418605	(0.39,0.42]	chr8	739602	6	UTR3	UTR3:EXON_MRNA	GTF2E2	ENSG00000197265.9	ENST00000355904.9	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.51636	3.9238299999999997	4.3313	0.00209984	6.99837e-4	0.0204266	0.00846751
chr17	7013668	7013742	16103368	0	+	0.418919	(0.39,0.42]	chr17	1296027	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	RNASEK:RNASEK-C17orf49	ENSG00000219200.12:ENSG00000161939.19	ENST00000548577.5:ENST00000546395.5:ENST00000570898.1:ENST00000593646.6:ENST00000552039.2:ENST00000549775.5:ENST00000552176.2:ENST00000552842.1:ENST00000549393.2:ENST00000575822.5:ENST00000547863.5:ENST00000552321.2:ENST00000607564.1:ENST00000547302.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.82973	3.92382	4.01791	1.3728e-4	4.78174e-5	0.00232973	0.00109049
chr16	30225005	30225104	15913250	0	-	0.575758	(0.53,0.59]	chr16	1275086	20	CDS	CDS:EXON_MRNA	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.64837	3.9236	5.19883	0.0199467	8.7034e-5	0.0984041	0.00177086
chr12	50099474	50099569	12870522	0	+	0.536842	(0.53,0.59]	chr12	999966	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9:ENST00000548573.5:ENST00000549274.1:ENST00000549526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	3.5393	3.92353	4.30776	0.00407289	6.46017e-4	0.0324137	0.00799743
chr3	129257726	129257793	3730419	0	+	0.537313	(0.53,0.59]	chr3	318907	1	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.5393	3.92353	4.30776	0.00407289	6.46017e-4	0.0324137	0.00799743
chr19	35651243	35651343	17306013	0	+	0.51	(0.49,0.53]	chr19	1431256	1	CDS_START	CDS_START:CDS:EXON_MRNA	COX6B1	ENSG00000126267.11	ENST00000649813.2:ENST00000592141.6:ENST00000392201.1:ENST00000652250.1:ENST00000590618.1	protein_coding	protein_coding	protein_coding	protein_coding	12	193	2	3.91716	3.923375	3.92959	4.44406e-9	4.39444e-9	4.13274e-7	3.84442e-7
chr15	99258624	99258723	15142848	0	+	0.363636	(0.36,0.39]	chr15	1190792	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	LRRC28:HSP90B2P	ENSG00000168904.15:ENSG00000259706.1	ENST00000558879.5:ENST00000559399.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000561253.5:ENST00000558500.5:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558861.1:ENST00000559111.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	65	2	2.38564	3.92328	5.46092	0.0476159	4.88857e-10	0.17993	5.56818e-8
chr2	215332444	215332507	2377105	0	+	0.52381	(0.49,0.53]	chr2	213532	2	CDS	CDS:UTR3:EXON_MRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.33324	3.92318	4.51312	0.00162947	0.00156636	0.0169972	0.0156889
chr17	49828492	49828591	16260204	0	+	0.515152	(0.49,0.53]	chr17	1318079	11	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000424009.6:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.99849	3.9229649999999996	4.84744	0.00630123	3.70203e-4	0.0445415	0.00515475
chr19	7967714	7967790	17447989	0	-	0.5	(0.49,0.53]	chr19	1458197	3	CDS	CDS:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.99849	3.9229649999999996	4.84744	0.00630123	3.70203e-4	0.0445415	0.00515475
chr5	133104336	133104436	6227188	0	+	0.53	(0.49,0.53]	chr5	484832	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000514825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.99849	3.9229649999999996	4.84744	0.00630123	3.70203e-4	0.0445415	0.00515475
chr3	23919466	23919501	3358561	0	+	0.571429	(0.53,0.59]	chr3	294138	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	147	2	3.7619	3.9227849999999997	4.08367	1.14839e-6	2.79853e-8	4.9396e-5	1.8758e-6
chr3	47772876	47772936	4163648	0	-	0.5	(0.49,0.53]	chr3	348476	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.49797	3.922435	5.3469	0.00843736	2.75121e-5	0.0546021	6.30607e-4
chr6	30590792	30590883	7111579	0	+	0.527473	(0.49,0.53]	chr6	544897	2	UTR3	UTR3:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.49797	3.922435	5.3469	0.00843736	2.75121e-5	0.0546021	6.30607e-4
chr21	38823577	38823676	18120715	0	+	0.444444	(0.42,0.455]	chr21	1536516	8	UTR3	UTR3:EXON_MRNA	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000667466.1:ENST00000360938.8:ENST00000666778.1:ENST00000653642.1:ENST00000662305.1	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	3.05063	3.922405	4.79418	5.43749e-5	2.10099e-7	0.00121043	1.05955e-5
chr15	52551833	52551933	15287506	0	-	0.3	(0.29,0.33]	chr15	1206631	49	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000568196.1:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6:ENST00000564163.5:ENST00000563566.5:ENST00000561971.1:ENST00000565288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	3.31614	3.9222	4.52826	3.2999e-4	1.39616e-6	0.00504024	5.29508e-5
chr1	202941479	202941572	1453185	0	-	0.483871	(0.455,0.49]	chr1	146051	8	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10:ENST00000367254.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.64247	3.92218	4.20189	0.00397662	2.341e-5	0.0322851	5.54056e-4
chr1	214663988	214664085	710677	0	+	0.28866000000000003	[0,0.29]	chr1	71966	3	UTR3	UTR3:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.26961	3.921885	4.57416	0.00229774	6.75561e-4	0.0210664	0.00873562
chr1	42759200	42759295	966566	0	-	0.557895	(0.53,0.59]	chr1	101773	1	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1:ENST00000372526.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	3.67993	3.92188	4.16383	0.00659193	3.22778e-4	0.0454205	0.0046122
chr11	35189988	35190065	11908421	0	+	0.532468	(0.53,0.59]	chr11	910029	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD44	ENSG00000026508.20	ENST00000415148.6:ENST00000263398.11:ENST00000428726.8:ENST00000528086.5:ENST00000425428.6:ENST00000526669.6:ENST00000433892.6:ENST00000525211.6:ENST00000278386.10:ENST00000434472.6:ENST00000352818.8:ENST00000442151.6:ENST00000526000.6:ENST00000279452.10:ENST00000527889.6:ENST00000531118.5:ENST00000528455.5:ENST00000531873.5:ENST00000525209.5:ENST00000639002.1:ENST00000531110.6:ENST00000525685.6:ENST00000534296.5:ENST00000525688.5:ENST00000278385.10:ENST00000533222.5:ENST00000525241.1:ENST00000524922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.67993	3.92188	4.16383	0.00659193	3.22778e-4	0.0454205	0.0046122
chr18	46264409	46264508	16859307	0	+	0.363636	(0.36,0.39]	chr18	1389126	14	UTR3	UTR3:EXON_MRNA	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	3.4589	3.921855	4.38481	9.87237e-5	8.19365e-8	0.00194682	4.71175e-6
chr15	64963220	64963320	15342356	0	-	0.33	(0.29,0.33]	chr15	1211237	3	UTR3	UTR3:EXON_MRNA	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	3.08169	3.9218	4.76191	0.00114594	2.22391e-7	0.0130468	1.10935e-5
chr22	38740266	38740349	18511609	0	-	0.686747	(0.59,1]	chr22	1580325	1	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000477262.5:ENST00000469086.5:ENST00000464202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	3.3965	3.9216050000000005	4.44671	0.00931497	1.83913e-4	0.0586162	0.00296795
chr7	87835354	87835453	8913770	0	-	0.343434	(0.33,0.36]	chr7	680337	19	UTR3	UTR3:EXON_MRNA	SLC25A40	ENSG00000075303.13	ENST00000341119.10	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.7655	3.92152	5.07754	0.0175892	7.92926e-5	0.0918323	0.00150306
chr1	27406307	27406406	908766	0	-	0.585859	(0.53,0.59]	chr1	95011	22	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.28422	3.92141	4.5586	0.00161229	2.10061e-4	0.0169168	0.00327655
chr3	195779086	195779186	4661057	0	-	0.57	(0.53,0.59]	chr3	385270	4	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.28422	3.92141	4.5586	0.00161229	2.10061e-4	0.0169168	0.00327655
chr16	88875434	88875530	16075706	0	-	0.520833	(0.49,0.53]	chr16	1291936	7	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.60476	3.921175	4.23759	0.00436474	4.52633e-4	0.0335517	0.00642319
chr11	68198432	68198532	12431822	0	-	0.42	(0.39,0.42]	chr11	966123	79	INTRON	INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000427752.6:ENST00000405515.5:ENST00000401547.6:ENST00000402789.5:ENST00000402185.6:ENST00000453170.5:ENST00000458496.1:ENST00000434573.1:ENST00000466295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.56097	3.921125	4.28128	0.00342611	6.12149e-4	0.0283456	0.00818575
chr12	7136205	7136298	12717227	0	+	0.537634	(0.53,0.59]	chr12	987669	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000541667.5:ENST00000537408.1:ENST00000540931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	3.75615	3.92107	4.08599	2.16536e-4	3.38473e-5	0.00361336	7.45971e-4
chr6	25731858	25731936	7645529	0	-	0.641026	(0.59,1]	chr6	582274	2	EXON_PSEUDO	EXON_PSEUDO	H2BC2P	ENSG00000178762.4	ENST00000369177.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	85	2	3.41536	3.9206450000000004	4.42593	0.00164655	1.38583e-5	0.0163443	3.94563e-4
chr3	197950935	197950967	3992949	0	+	0.53125	(0.53,0.59]	chr3	336597	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	233	2	1.86007	3.9206000000000003	5.98113	0.00184795	1e-12	0.0185736	2.25522e-10
chr17	28756277	28756377	16487292	0	-	0.48	(0.455,0.49]	chr17	1348267	4	UTR3	UTR3:EXON_MRNA	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000452648.8:ENST00000582059.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.96925	3.9205550000000002	4.87186	0.00698725	2.33781e-4	0.0473262	0.00385436
chr6	42866905	42867003	7153747	0	+	0.489796	(0.455,0.49]	chr6	552174	16	UTR3	UTR3:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.96925	3.9205550000000002	4.87186	0.00698725	2.33781e-4	0.0473262	0.00385436
chr12	95495052	95495149	13024989	0	+	0.371134	(0.36,0.39]	chr12	1013998	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.63521	3.920385	5.20556	0.00633242	4.46552e-5	0.0446708	9.34801e-4
chrX	101412854	101412950	18786567	0	+	0.375	(0.36,0.39]	chrX	1601436	9	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.63521	3.920385	5.20556	0.00633242	4.46552e-5	0.0446708	9.34801e-4
chr17	49828789	49828888	16260207	0	+	0.464646	(0.455,0.49]	chr17	1318079	14	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000424009.6:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	2.59329	3.9202649999999997	5.24724	7.86326e-4	3.09759e-5	0.00929193	7.62166e-4
chr7	76303801	76303869	8343355	0	+	0.602941	(0.59,1]	chr7	636379	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000447574.1:ENST00000674650.1:ENST00000675417.1:ENST00000429938.1:ENST00000676195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	106	2	3.31617	3.92026	4.52435	3.02114e-4	6.54525e-6	0.00472028	1.94116e-4
chr18	9537124	9537223	16753992	0	+	0.484848	(0.455,0.49]	chr18	1381612	13	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.20069	3.920235	4.63978	0.00285821	6.94032e-4	0.0245841	0.00876781
chr22	32406661	32406761	18476335	0	-	0.47	(0.455,0.49]	chr22	1577178	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RTCB	ENSG00000100220.12	ENST00000216038.6:ENST00000476619.5:ENST00000485373.5:ENST00000487704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	3.20069	3.920235	4.63978	0.00285821	6.94032e-4	0.0245841	0.00876781
chr15	34228428	34228479	14860495	0	+	0.392157	(0.39,0.42]	chr15	1167002	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000560911.5:ENST00000559078.5:ENST00000558205.5:ENST00000557879.1:ENST00000558102.1:ENST00000559421.1:ENST00000561246.1:ENST00000560947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	3.56097	3.92021	4.27945	6.12149e-4	2.07257e-7	0.00818575	1.04734e-5
chr1	150751844	150751926	1290277	0	-	0.487805	(0.455,0.49]	chr1	128449	1	CDS	CDS:EXON_MRNA:INTRON	CTSS	ENSG00000163131.12	ENST00000680288.1:ENST00000680664.1:ENST00000679512.1:ENST00000368985.8:ENST00000679898.1:ENST00000472977.7:ENST00000607427.2:ENST00000681444.1:ENST00000680311.1:ENST00000483930.2:ENST00000680471.1:ENST00000680931.1:ENST00000448301.7:ENST00000681728.1:ENST00000679582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.47671	3.9198899999999997	4.36307	0.0368644	0.00218641	0.145024	0.0208941
chr11	124654723	124654793	12639895	0	-	0.457143	(0.455,0.49]	chr11	981107	2	CDS	CDS:EXON_MRNA	SIAE	ENSG00000110013.13	ENST00000263593.8:ENST00000545756.5:ENST00000618733.4:ENST00000533613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.47671	3.9198899999999997	4.36307	0.0368644	0.00218641	0.145024	0.0208941
chr2	189448443	189448508	2271805	0	+	0.461538	(0.455,0.49]	chr2	206179	2	CDS	CDS:EXON_MRNA	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000472286.5:ENST00000475596.1:ENST00000314761.9:ENST00000427960.5:ENST00000631047.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.47671	3.9198899999999997	4.36307	0.0368644	0.00218641	0.145024	0.0208941
chr6	57537439	57537532	7194047	0	+	0.473118	(0.455,0.49]	chr6	556226	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRIM2	ENSG00000146143.19	ENST00000672107.1:ENST00000615550.5:ENST00000470638.3:ENST00000550475.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.47671	3.9198899999999997	4.36307	0.0368644	0.00218641	0.145024	0.0208941
chr8	693112	693211	9655730	0	-	0.484848	(0.455,0.49]	chr8	732570	1	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.47671	3.9198899999999997	4.36307	0.0368644	0.00218641	0.145024	0.0208941
chr19	6534966	6535066	17213526	0	+	0.63	(0.59,1]	chr19	1415923	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.67401	3.919885	5.16576	0.00166951	6.55716e-4	0.0173932	0.0080931
chr1	952505	952600	825593	0	-	0.526316	(0.49,0.53]	chr1	81734	2	CDS	CDS:EXON_MRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	3.38647	3.91985	4.45323	1.15525e-4	2.6067e-6	0.00204405	9.88864e-5
chr18	41789317	41789395	17091806	0	-	0.397436	(0.39,0.42]	chr18	1403659	3	EXON_PSEUDO	EXON_PSEUDO	NPM1P1	ENSG00000267652.1	ENST00000588959.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.0503	3.91954	4.78878	0.00570576	4.27222e-4	0.0424438	0.00577513
chr3	196348454	196348553	4664949	0	-	0.40404	(0.39,0.42]	chr3	385869	9	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.0503	3.91954	4.78878	0.00570576	4.27222e-4	0.0424438	0.00577513
chr5	90519296	90519396	6692550	0	-	0.42	(0.39,0.42]	chr5	515980	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	LYSMD3	ENSG00000176018.13	ENST00000500869.6:ENST00000315948.11:ENST00000509384.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.0503	3.91954	4.78878	0.00570576	4.27222e-4	0.0424438	0.00577513
chr7	10940057	10940153	8678282	0	-	0.520833	(0.49,0.53]	chr7	663729	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000486007.1:ENST00000492822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	342	2	3.67145	3.919485	4.16752	8.9838e-10	1.6204e-11	1.04655e-7	2.68438e-9
chr1	37582279	37582336	947395	0	-	0.508772	(0.49,0.53]	chr1	99558	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000538069.2:ENST00000469191.1:ENST00000489146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr1	193082561	193082634	631141	0	+	0.493151	(0.49,0.53]	chr1	64139	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr11	65278729	65278826	11983435	0	+	0.515464	(0.49,0.53]	chr11	920152	1	CDS	CDS:UTR3:EXON_MRNA	POLA2:RP11-867O8.9	ENSG00000014138.9:ENSG00000285816.1	ENST00000527850.5:ENST00000649896.1:ENST00000532469.1:ENST00000265465.8:ENST00000532391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr11	77883891	77883952	12475855	0	-	0.52459	(0.49,0.53]	chr11	970481	2	CDS	CDS:UTR3:EXON_MRNA	INTS4	ENSG00000149262.17	ENST00000433818.6:ENST00000534064.6:ENST00000535943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr12	122216758	122216813	13588371	0	-	0.509091	(0.49,0.53]	chr12	1070020	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-512M8.12:DIABLO:RP11-512M8.13	ENSG00000284934.2:ENSG00000184047.20:ENSG00000256861.1	ENST00000645606.1:ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000535844.1:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5:ENST00000485724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr17	7176231	7176329	16428460	0	-	0.510204	(0.49,0.53]	chr17	1339087	14	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr17	7221627	7221682	16103621	0	+	0.509091	(0.49,0.53]	chr17	1296142	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ACADVL	ENSG00000072778.20	ENST00000543245.6:ENST00000322910.9:ENST00000583312.5:ENST00000350303.9:ENST00000579286.5:ENST00000577857.5:ENST00000577191.5:ENST00000356839.10:ENST00000581562.5:ENST00000579886.2:ENST00000577433.5:ENST00000582166.1:ENST00000580365.1:ENST00000581378.5:ENST00000583760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr17	72557823	72557923	16668421	0	-	0.53	(0.49,0.53]	chr17	1371647	234	INTRON	INTRON	LINC00511	ENSG00000227036.8	ENST00000648631.1:ENST00000648248.1:ENST00000650419.1:ENST00000581801.6:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000649793.2:ENST00000650131.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr2	106371085	106371159	1976059	0	+	0.5	(0.49,0.53]	chr2	187454	3	EXON_PSEUDO	EXON_PSEUDO	ANAPC1P6	ENSG00000235486.1	ENST00000447760.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr20	34935575	34935642	17950103	0	-	0.522388	(0.49,0.53]	chr20	1520348	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GSS	ENSG00000100983.12	ENST00000651619.1:ENST00000646735.1:ENST00000646405.1:ENST00000642498.1:ENST00000643908.1:ENST00000645723.1:ENST00000643188.1:ENST00000644793.1:ENST00000646512.1:ENST00000645328.1:ENST00000643502.1:ENST00000644538.1:ENST00000643443.1:ENST00000451957.2:ENST00000642538.1:ENST00000645408.1:ENST00000646497.1:ENST00000642493.1:ENST00000646502.1:ENST00000646766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr22	42060923	42060995	18520717	0	-	0.527778	(0.49,0.53]	chr22	1581503	1	CDS	CDS:EXON_MRNA	NAGA	ENSG00000198951.12	ENST00000396398.8:ENST00000403363.5:ENST00000402937.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr4	26430699	26430799	4766676	0	+	0.51	(0.49,0.53]	chr4	394278	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBPJ	ENSG00000168214.21	ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000515023.6:ENST00000505727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr4	94585627	94585682	4984465	0	+	0.509091	(0.49,0.53]	chr4	407409	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000509357.5:ENST00000513341.5:ENST00000511586.5:ENST00000380176.7:ENST00000506632.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr6	42829974	42830073	7153369	0	+	0.50505	(0.49,0.53]	chr6	552130	16	CDS	CDS:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chrX	55452750	55452842	18705658	0	+	0.51087	(0.49,0.53]	chrX	1596429	4	CDS	CDS:EXON_MRNA	MAGEH1	ENSG00000187601.5	ENST00000342972.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chrX	71110503	71110595	19106759	0	-	0.521739	(0.49,0.53]	chrX	1625361	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	RP5-1091N2.12:IL2RG	ENSG00000285171.1:ENSG00000147168.13	ENST00000644911.1:ENST00000645518.1:ENST00000646106.1:ENST00000646505.1:ENST00000644022.1:ENST00000644708.1:ENST00000645266.1:ENST00000647492.1:ENST00000642473.1:ENST00000374202.7:ENST00000276110.6:ENST00000374188.7:ENST00000512747.3:ENST00000456850.6:ENST00000464642.5:ENST00000487883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.8967	3.919235	3.94177	0.0128791	0.0104929	0.0725185	0.063428
chr16	3666044	3666118	15830558	0	-	0.418919	(0.39,0.42]	chr16	1263627	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.89848	3.91922	3.93996	0.00841622	9.30194e-5	0.054565	0.00169783
chr3	184331265	184331364	3949323	0	+	0.555556	(0.53,0.59]	chr3	332485	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000422614.5:ENST00000460829.5:ENST00000475721.5:ENST00000464548.1:ENST00000478291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.79538	3.91918	5.04298	2.47731e-4	1.91383e-4	0.00374232	0.0032874
chrX	76334931	76335022	19122464	0	-	0.461538	(0.455,0.49]	chrX	1626571	2	EXON_PSEUDO	EXON_PSEUDO	LDHBP2	ENSG00000213684.4	ENST00000456969.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	2.69053	3.919135	5.14774	0.0182983	7.45457e-5	0.0925808	0.00142165
chr2	157284281	157284364	2152367	0	+	0.493976	(0.49,0.53]	chr2	198579	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.09336	3.91887	4.74438	5.91752e-4	1.28432e-4	0.00743488	0.00241206
chr12	76353093	76353193	13424308	0	-	0.36	(0.33,0.36]	chr12	1056701	14	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.00573	3.9188549999999998	4.83198	0.00630535	1.88689e-4	0.044701	0.0032588
chr19	2072509	2072607	17421615	0	-	0.581633	(0.53,0.59]	chr19	1453173	16	UTR3	UTR3:EXON_MRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.8006	3.918825	5.03705	0.00233666	0.00020199200000000001	0.0221314	0.00317801
chr2	32515672	32515770	1714037	0	+	0.428571	(0.42,0.455]	chr2	168274	8	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1:ENST00000461788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.31161	3.918775	4.52594	0.00186138	0.00144145	0.018635	0.0147046
chr17	51161727	51161745	16266546	0	+	0.388889	(0.36,0.39]	chr17	1319592	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.63115	3.918355	5.20556	0.0245975	4.46552e-5	0.114841	9.34801e-4
chr7	158732940	158733038	9159297	0	-	0.387755	(0.36,0.39]	chr7	699685	21	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.63115	3.918355	5.20556	0.0245975	4.46552e-5	0.114841	9.34801e-4
chrX	154477768	154477855	19278448	0	-	0.37931	(0.36,0.39]	chrX	1638438	1	UTR3	UTR3:EXON_MRNA	LAGE3	ENSG00000196976.7	ENST00000357360.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.63115	3.918355	5.20556	0.0245975	4.46552e-5	0.114841	9.34801e-4
chr17	38322683	38322772	16215841	0	+	0.52809	(0.49,0.53]	chr17	1310395	2	UTR3	UTR3:EXON_MRNA	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.56183	3.9183000000000003	5.27477	0.0261296	4.14521e-5	0.118976	8.8376e-4
chrX	155280014	155280068	19283320	0	-	0.5	(0.49,0.53]	chrX	1639100	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5:ENST00000321926.4:ENST00000491205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.56183	3.9183000000000003	5.27477	0.0261296	4.14521e-5	0.118976	8.8376e-4
chr5	154822524	154822577	6929640	0	-	0.433962	(0.42,0.455]	chr5	530579	2	CDS	CDS:UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000524250.5:ENST00000517938.5:ENST00000520581.5:ENST00000521518.5:ENST00000524363.5:ENST00000522825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.34191	3.918095	5.49428	0.0159091	1.07978e-5	0.0854674	2.9314e-4
chrY	18704794	18704893	19323845	0	+	0.444444	(0.42,0.455]	chrY	1642405	61	INTRON	INTRON	OFD1P6Y	ENSG00000242153.7	ENST00000451061.5	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	61	984	2	2.72779	3.91805	5.10831	1.22554e-7	1e-12	7.49141e-6	2.25522e-10
chr17	7014450	7014532	16103379	0	+	0.548781	(0.53,0.59]	chr17	1296034	3	UTR3	UTR3:UTR5:EXON_MRNA:SS5_PROX:INTRON	RNASEK:RNASEK-C17orf49:C17orf49	ENSG00000219200.12:ENSG00000161939.19:ENSG00000258315.5	ENST00000548577.5:ENST00000546395.5:ENST00000593646.6:ENST00000552039.2:ENST00000549775.5:ENST00000552176.2:ENST00000552842.1:ENST00000549393.2:ENST00000547863.5:ENST00000552321.2:ENST00000607564.1:ENST00000547302.3:ENST00000546495.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.79311	3.9180450000000002	5.04298	6.84253e-4	1.91383e-4	0.00836671	0.0032874
chr7	92613650	92613750	8924976	0	-	0.31	(0.29,0.33]	chr7	681136	89	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	3.91112	3.918015	3.92491	6.01019e-6	3.6899e-6	1.97805e-4	1.20177e-4
chr19	39433345	39433418	17563223	0	-	0.506849	(0.49,0.53]	chr19	1475625	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000602153.5:ENST00000595386.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	41	617	2	3.77088	3.91787	4.06486	1.6756e-11	1.93767e-12	2.7627e-9	4.404e-10
chr9	99230336	99230424	10384059	0	+	0.443182	(0.42,0.455]	chr9	782338	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	3.5762	3.917485	4.25877	1.07991e-6	2.31906e-7	4.27337e-5	1.29516e-5
chr6	36495583	36495683	7681311	0	-	0.33	(0.29,0.33]	chr6	588939	18	UTR3	UTR3:EXON_MRNA	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.76009	3.917395	4.0747	0.00577533	3.08518e-4	0.0417823	0.00476847
chr3	130827837	130827927	3737074	0	+	0.466667	(0.455,0.49]	chr3	320069	3	EXON_PSEUDO	EXON_PSEUDO	GSTO3P	ENSG00000232829.3	ENST00000504733.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	34	2	3.32637	3.91721	4.50805	0.00122223	1.64563e-4	0.0135383	0.00269001
chr5	10415487	10415578	5875345	0	+	0.483516	(0.455,0.49]	chr5	462024	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	134	2	3.68447	3.917065	4.14966	4.35764e-8	4.1374e-8	3.02189e-6	2.61355e-6
chr11	67586188	67586273	11996991	0	+	0.576471	(0.53,0.59]	chr11	923176	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1:ENST00000495996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	3.2308500000000002	3.9170450000000003	4.6032400000000004	2.81517e-4	1.08833e-6	0.00415519	4.73591e-5
chr14	75133420	75133517	14709060	0	-	0.329897	(0.29,0.33]	chr14	1152525	21	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.80161	3.9164250000000003	5.03124	0.00415667	9.06368e-5	0.0325842	0.00167558
chr13	28215303	28215402	13660239	0	+	0.494949	(0.49,0.53]	chr13	1076619	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	PAN3:EEF1A1P3	ENSG00000152520.14:ENSG00000232587.1	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000417549.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	2	35	2	3.27328	3.9162850000000002	4.55929	0.00116196	2.21441e-4	0.0130851	0.00341572
chr1	12209020	12209120	47319	0	+	0.62	(0.59,1]	chr1	6130	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr1	154946708	154946803	1305920	0	-	0.631579	(0.59,1]	chr1	131551	13	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr12	71663211	71663310	13409512	0	-	0.606061	(0.59,1]	chr12	1056025	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550712.1:ENST00000552037.1:ENST00000548100.1:ENST00000549407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr14	69708847	69708932	14374959	0	+	0.647059	(0.59,1]	chr14	1123270	3	CDS	CDS:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr3	128071298	128071394	3725204	0	+	0.645833	(0.59,1]	chr3	318515	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr3	143972710	143972803	3793967	0	+	0.752688	(0.59,1]	chr3	324036	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000491798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr8	143817645	143817713	10146170	0	-	0.676471	(0.59,1]	chr8	762870	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5:ENST00000524570.5:ENST00000532884.1:ENST00000526459.5:ENST00000527744.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	19	2	3.71566	3.9161900000000003	4.11672	0.0487443	0.0222273	0.175495	0.105595
chr22	41637607	41637699	18381446	0	+	0.456522	(0.455,0.49]	chr22	1564693	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.58479	3.916015	5.24724	0.00200187	3.09759e-5	0.0189555	7.62166e-4
chr18	35140465	35140562	16822718	0	+	0.536082	(0.53,0.59]	chr18	1387343	2	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1:ENST00000588085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.78899	3.915985	5.04298	0.00245784	1.91383e-4	0.0221765	0.0032874
chr14	77511784	77511883	14717354	0	-	0.525253	(0.49,0.53]	chr14	1153348	59	UTR3	UTR3:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.04107	3.915965	4.79086	0.00533879	4.20783e-4	0.0392268	0.00611538
chr2	65016595	65016673	1853316	0	+	0.525641	(0.49,0.53]	chr2	175837	3	CDS	CDS:EXON_MRNA:INTRON	SLC1A4	ENSG00000115902.11	ENST00000531327.5:ENST00000471551.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	3.04107	3.915965	4.79086	0.00533879	4.20783e-4	0.0392268	0.00611538
chr15	90980241	90980315	15439286	0	-	0.527027	(0.49,0.53]	chr15	1221381	1	CDS	CDS:UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000559828.1:ENST00000560914.1:ENST00000647331.1:ENST00000556982.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.15207	3.915895	4.67972	0.00347189	6.94757e-4	0.0286293	0.00876781
chr3	127621867	127621962	3723617	0	+	0.526316	(0.49,0.53]	chr3	318305	2	UTR3	UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000265056.12:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.15207	3.915895	4.67972	0.00347189	6.94757e-4	0.0286293	0.00876781
chr15	60351723	60351812	15316737	0	-	0.438202	(0.42,0.455]	chr15	1208924	1	CDS	CDS:UTR3:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	99	2	3.87621	3.915795	3.95538	6.68846e-5	2.2108e-8	0.00142352	1.53616e-6
chr10	97226022	97226121	11644416	0	-	0.484848	(0.455,0.49]	chr10	887008	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGAP19-SLIT1:ARHGAP19	ENSG00000269891.2:ENSG00000213390.11	ENST00000479633.2:ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.52734	3.9156250000000004	5.30391	0.00792433	3.12735e-5	0.0523592	6.97306e-4
chr5	25189167	25189264	6504019	0	-	0.28866000000000003	[0,0.29]	chr5	504194	5	INTRON	INTRON	LINC02228	ENSG00000251273.4	ENST00000641970.1:ENST00000641261.2:ENST00000507600.2:ENST00000670589.1:ENST00000662466.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	3.79311	3.915545	4.03798	1.75012e-4	7.64187e-5	0.00283967	0.00160163
chr1	43365185	43365280	968559	0	-	0.505263	(0.49,0.53]	chr1	102065	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	ELOVL1:MIR6734	ENSG00000066322.15:ENSG00000283836.1	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8:ENST00000468865.6:ENST00000464204.5:ENST00000470968.6:ENST00000487209.5:ENST00000470769.5:ENST00000497569.5:ENST00000482302.5:ENST00000497050.5:ENST00000621166.1:ENST00000478481.5:ENST00000479439.5:ENST00000465321.5:ENST00000479686.5:ENST00000496932.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	2	34	2	2.30264	3.9155049999999996	5.52837	0.0165402	7.50805e-6	0.087611	2.3779e-4
chr11	78109441	78109511	12477808	0	-	0.514286	(0.49,0.53]	chr11	970725	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	3.88887	3.91532	3.94177	0.0104929	9.98984e-5	0.063428	0.00180257
chr10	102162169	102162269	11226681	0	+	0.5	(0.49,0.53]	chr10	854876	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	3.76099	3.9152050000000003	4.06942	2.00194e-4	3.44689e-5	0.0034021	7.57659e-4
chr2	43887906	43888005	2622909	0	-	0.494949	(0.49,0.53]	chr2	236084	18	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	3.15044	3.9150799999999997	4.67972	6.94757e-4	4.32676e-4	0.00876781	0.00583708
chr4	342820	342891	5274407	0	-	0.521127	(0.49,0.53]	chr4	424132	1	EXON_PSEUDO	EXON_PSEUDO	RP11-478C6.4	ENSG00000250321.1	ENST00000506193.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	34	2	3.15044	3.9150799999999997	4.67972	6.94757e-4	4.32676e-4	0.00876781	0.00583708
chr11	119025966	119026023	12626344	0	-	0.561404	(0.53,0.59]	chr11	979713	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	2.36244	3.91503	5.46762	0.0131162	1.97761e-5	0.073569	5.29643e-4
chr2	96864073	96864148	2792268	0	-	0.573333	(0.53,0.59]	chr2	249235	3	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.05775	3.9149849999999997	4.77222	6.94592e-4	6.67251e-4	0.00867533	0.00846751
chr8	30069973	30070048	9780524	0	-	0.426667	(0.42,0.455]	chr8	739521	3	CDS	CDS:UTR3:UTR5:EXON_MRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000522794.1:ENST00000522055.1:ENST00000523761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.7523	3.91483	5.07736	0.0153283	2.03293e-8	0.0828908	1.42506e-6
chr12	19456805	19456898	13233335	0	-	0.483871	(0.455,0.49]	chr12	1037586	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P4	ENSG00000245205.3	ENST00000359165.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	95	2	3.19847	3.9146099999999997	4.63075	1.88969e-5	1.02236e-8	5.12059e-4	7.89931e-7
chr1	161447290	161447390	1333669	0	-	0.74	(0.59,1]	chr1	136938	64	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	86	2805	2	3.58245	3.9144449999999997	4.24644	4.14366e-9	2.10961e-11	3.62045e-7	3.73108e-9
chr2	73251363	73251432	1885494	0	+	0.550725	(0.53,0.59]	chr2	178580	3	CDS	CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	9	147	2	3.01426	3.9144200000000002	4.81458	6.15506e-6	2.81239e-9	2.0192e-4	2.58208e-7
chr11	32588607	32588707	11898164	0	+	0.44	(0.42,0.455]	chr11	908897	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	91	2	3.46409	3.9143049999999997	4.36452	2.60265e-6	9.38109e-8	8.97428e-5	5.9091e-6
chr11	63976394	63976468	11977991	0	+	0.513514	(0.49,0.53]	chr11	918584	2	UTR3	UTR3:EXON_MRNA:INTRON	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	46	685	2	3.72836	3.9143049999999997	4.10025	1.22e-11	1.10856e-12	2.27934e-9	2.47128e-10
chr17	42315259	42315356	16547434	0	-	0.43299	(0.42,0.455]	chr17	1357253	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	3.52659	3.91418	4.30177	6.87022e-4	7.69083e-6	0.00876781	2.20857e-4
chrX	121204242	121204338	19198101	0	-	0.427083	(0.42,0.455]	chrX	1632450	12	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	2.54043	3.91413	5.28783	0.00705852	2.17539e-5	0.047732	5.73422e-4
chr1	161462076	161462176	1333817	0	-	0.73	(0.59,1]	chr1	136938	212	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	105	3324	2	3.74215	3.9140249999999996	4.0859	9.50725e-10	5.8643e-11	1.003e-7	9.26546e-9
chr2	37100005	37100104	2597013	0	-	0.363636	(0.36,0.39]	chr2	233829	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.24025	3.9138599999999997	4.58747	6.55819e-4	2.74161e-4	0.00860229	0.00406677
chr4	77035198	77035297	4900538	0	+	0.373737	(0.36,0.39]	chr4	403559	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.24025	3.9138599999999997	4.58747	6.55819e-4	2.74161e-4	0.00860229	0.00406677
chr17	7499263	7499280	16105140	0	+	0.294118	(0.29,0.33]	chr17	1296725	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1:ENST00000575547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	3.13212	3.91371	4.6953	0.00551048	4.88271e-4	0.0414592	0.00638318
chr10	96145043	96145143	11209239	0	+	0.44	(0.42,0.455]	chr10	852721	94	INTRON	INTRON	ZNF518A	ENSG00000177853.14	ENST00000316045.9:ENST00000488700.5:ENST00000624776.3:ENST00000478086.5:ENST00000539666.5:ENST00000563195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.81137	3.913495	5.01562	0.0120386	1.01971e-4	0.0700876	0.0019861
chr12	45421070	45421149	12849833	0	+	0.582278	(0.53,0.59]	chr12	997900	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1:ENST00000679426.1:ENST00000441606.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.7898	3.913425	5.03705	0.0128364	0.00020199200000000001	0.0719798	0.00317801
chr1	45015498	45015575	174361	0	+	0.38961	(0.36,0.39]	chr1	22559	1	UTR3	UTR3:EXON_MRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000652514.1:ENST00000472254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.58476	3.91335	4.24194	0.00276729	5.01956e-4	0.0247437	0.00653592
chr9	105773864	105773922	10400968	0	+	0.362069	(0.36,0.39]	chr9	783699	1	CDS	CDS:UTR3:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.58476	3.91335	4.24194	0.00276729	5.01956e-4	0.0247437	0.00653592
chr13	46127393	46127491	14009614	0	-	0.408163	(0.39,0.42]	chr13	1098488	16	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.5823	3.912995	5.24369	0.00246531	4.15285e-5	0.0230262	8.8376e-4
chr15	65887840	65887938	14982327	0	+	0.357143	(0.33,0.36]	chr15	1177744	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000564910.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	3.14227	3.91288	4.68349	1.5366e-4	4.29305e-7	0.00279114	1.94339e-5
chr2	9584813	9584908	2508162	0	-	0.378947	(0.36,0.39]	chr2	226349	10	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	17	204	2	3.81023	3.9127899999999998	4.01535	5.40468e-10	3.56929e-10	6.08649e-8	4.65374e-8
chr1	226065727	226065799	738359	0	+	0.527778	(0.49,0.53]	chr1	74469	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	109	2	3.26122	3.91276	4.5643	4.03666e-6	1.79173e-8	1.29819e-4	1.39606e-6
chr14	54430256	54430356	14635523	0	-	0.33	(0.29,0.33]	chr14	1146400	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1:ENST00000556113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	2.74349	3.9127150000000004	5.08194	1.65851e-4	1.77073e-8	0.00270436	1.38368e-6
chr1	114396655	114396754	1236968	0	-	0.292929	(0.29,0.33]	chr1	120945	40	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000492227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.60688	3.9126199999999995	5.21836	6.9259e-4	3.15783e-5	0.00876781	7.02218e-4
chr5	123028774	123028868	6791674	0	-	0.43617	(0.42,0.455]	chr5	520669	1	CDS	CDS:EXON_MRNA	PPIC	ENSG00000168938.6	ENST00000306442.5:ENST00000415659.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.8515	3.912605	3.97371	0.0119089	6.07552e-5	0.0686664	0.00121305
chr1	219968805	219968905	1510662	0	-	0.51	(0.49,0.53]	chr1	150953	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000468487.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	71	2	2.65955	3.91256	5.16557	6.36135e-5	4.52255e-5	0.00136069	9.44585e-4
chr12	76084650	76084735	13424253	0	-	0.611765	(0.59,1]	chr12	1056691	2	UTR5	UTR5:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	41	1326	2	3.51082	3.91247	4.31412	4.76159e-8	2.35753e-11	3.2714e-6	3.74544e-9
chr1	203708023	203708104	669545	0	+	0.45679	(0.455,0.49]	chr1	67438	3	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.65079	3.9124300000000005	4.17407	3.61776e-4	1.754e-5	0.00544764	4.38078e-4
chr5	151267550	151267650	6297986	0	+	0.46	(0.455,0.49]	chr5	491682	2	UTR3	UTR3:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000357164.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.65079	3.9124300000000005	4.17407	3.61776e-4	1.754e-5	0.00544764	4.38078e-4
chr3	196062581	196062645	4663278	0	-	0.390625	(0.39,0.42]	chr3	385587	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000465288.5:ENST00000477148.1:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	320	2	3.57763	3.912325	4.24702	7.91794e-10	2.18559e-12	8.52337e-8	4.88768e-10
chrX	53378018	53378117	19076602	0	-	0.353535	(0.33,0.36]	chrX	1622486	40	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.57153	3.912305	5.25308	0.00330025	2.94355e-5	0.028478	6.67979e-4
chr11	14480831	14480905	12281795	0	-	0.351351	(0.33,0.36]	chr11	949637	2	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.62574	3.9122500000000002	5.19876	0.00176861	2.37278e-5	0.0172426	6.1689e-4
chr20	4699694	4699788	17661022	0	+	0.478723	(0.455,0.49]	chr20	1493235	5	CDS	CDS:EXON_MRNA	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.85172	3.9121499999999996	4.97258	0.010864	1.84876e-4	0.0643837	0.00296795
chr7	43645250	43645324	8793976	0	-	0.486486	(0.455,0.49]	chr7	670408	1	CDS	CDS:EXON_MRNA	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5:ENST00000431651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.85172	3.9121499999999996	4.97258	0.010864	1.84876e-4	0.0643837	0.00296795
chr9	96641658	96641758	10752596	0	-	0.47	(0.455,0.49]	chr9	814004	22	UTR3	UTR3:EXON_MRNA	PRXL2C	ENSG00000158122.12	ENST00000375234.8:ENST00000446045.1:ENST00000411939.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.85172	3.9121499999999996	4.97258	0.010864	1.84876e-4	0.0643837	0.00296795
chr12	113372670	113372738	13101570	0	+	0.558824	(0.53,0.59]	chr12	1022395	1	CDS	CDS:UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	3.38538	3.9120049999999997	4.43863	0.00254763	1.18366e-4	0.0233955	0.00207204
chr7	103551219	103551296	8963778	0	-	0.532468	(0.53,0.59]	chr7	686182	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	3.38538	3.9120049999999997	4.43863	0.00254763	1.18366e-4	0.0233955	0.00207204
chr7	6403776	6403871	8114076	0	+	0.431579	(0.42,0.455]	chr7	620430	15	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.62315	3.91182	4.20049	4.234e-4	1.49765e-5	0.00613535	3.83096e-4
chr11	759003	759057	11758741	0	+	0.462963	(0.455,0.49]	chr11	898417	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	111	2	3.27821	3.9117100000000002	4.54521	1.4015e-6	1.91271e-8	5.31304e-5	1.48078e-6
chr11	9428539	9428629	11792709	0	+	0.388889	(0.36,0.39]	chr11	902877	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.39803	3.91153	4.42503	0.00133228	0.00122711	0.0144372	0.0130695
chr14	101826418	101826517	14493868	0	+	0.383838	(0.36,0.39]	chr14	1132825	11	INTRON	INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000557268.5:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.39803	3.91153	4.42503	0.00133228	0.00122711	0.0144372	0.0130695
chr9	96641758	96641858	10752597	0	-	0.39	(0.36,0.39]	chr9	814005	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PRXL2C	ENSG00000158122.12	ENST00000375234.8:ENST00000446045.1:ENST00000411939.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.39803	3.91153	4.42503	0.00133228	0.00122711	0.0144372	0.0130695
chr13	95234609	95234684	14111539	0	-	0.413333	(0.39,0.42]	chr13	1104472	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.3298	3.9115200000000003	4.49324	0.00165391	0.00108192	0.0163614	0.0124943
chr2	32493539	32493603	1713802	0	+	0.390625	(0.39,0.42]	chr2	168217	1	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.3298	3.9115200000000003	4.49324	0.00165391	0.00108192	0.0163614	0.0124943
chr6	97143345	97143444	7854138	0	-	0.414141	(0.39,0.42]	chr6	601416	13	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.3298	3.9115200000000003	4.49324	0.00165391	0.00108192	0.0163614	0.0124943
chr19	5100350	5100450	17209395	0	+	0.39	(0.36,0.39]	chr19	1415164	175	INTRON	INTRON	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000381759.8:ENST00000536461.5:ENST00000589104.5:ENST00000588961.1:ENST00000588361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.88918	3.9114950000000004	4.93381	0.00212816	1.90009e-4	0.0206577	0.00302753
chr1	146076205	146076289	1270652	0	-	0.416667	(0.39,0.42]	chr1	125655	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF10	ENSG00000271425.9	ENST00000583866.9:ENST00000617010.2	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr15	34172760	34172859	15203301	0	-	0.414141	(0.39,0.42]	chr15	1196678	63	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr17	7113517	7113616	16428396	0	-	0.393939	(0.39,0.42]	chr17	1339053	43	INTRON	INTRON	ASGR2	ENSG00000161944.16	ENST00000254850.11:ENST00000355035.9:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr17	37147463	37147563	16523948	0	-	0.42	(0.39,0.42]	chr17	1352103	31	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr17	68250383	68250480	16334573	0	+	0.412371	(0.39,0.42]	chr17	1325183	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AMZ2	ENSG00000196704.14	ENST00000674770.2:ENST00000580548.5:ENST00000612294.4:ENST00000580753.5:ENST00000359904.8:ENST00000392720.6:ENST00000359783.8:ENST00000584837.5:ENST00000578175.5:ENST00000579724.5:ENST00000584494.5:ENST00000580837.5:ENST00000577866.5:ENST00000585050.5:ENST00000582430.1:ENST00000577985.5:ENST00000577273.1:ENST00000584836.5:ENST00000584350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr3	6773189	6773266	4012865	0	-	0.415584	(0.39,0.42]	chr3	337466	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	GRM7-AS3:MRPS36P1	ENSG00000226258.7:ENSG00000236152.1	ENST00000670757.1:ENST00000412629.6:ENST00000449158.2:ENST00000417482.5:ENST00000424366.5:ENST00000421291.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr4	106193689	106193770	5578005	0	-	0.395062	(0.39,0.42]	chr4	445378	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000514689.5:ENST00000515705.5:ENST00000511011.5:ENST00000506615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr5	32387548	32387623	6519225	0	-	0.413333	(0.39,0.42]	chr5	504977	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.49145	3.9113749999999996	4.3313	0.0350273	0.00209984	0.141505	0.0204266
chr3	10126792	10126891	3302354	0	+	0.474747	(0.455,0.49]	chr3	290648	6	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	3.90873	3.91137	3.91401	3.66904e-6	3.58445e-7	1.30734e-4	1.659e-5
chr17	20785626	20785725	16163497	0	+	0.555556	(0.53,0.59]	chr17	1303908	11	EXON_PSEUDO	EXON_PSEUDO	SCDP1	ENSG00000226549.3	ENST00000455244.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	75	2	2.515	3.9112	5.3074	0.0292633	4.01158e-9	0.129773	3.51297e-7
chr1	23865490	23865557	898092	0	-	0.552239	(0.53,0.59]	chr1	93339	1	CDS	CDS:EXON_MRNA	FUCA1	ENSG00000179163.12	ENST00000374479.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr1	52687906	52687993	1020556	0	-	0.551724	(0.53,0.59]	chr1	105851	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COA7	ENSG00000162377.6	ENST00000371538.5:ENST00000486918.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr1	155308911	155308993	483548	0	+	0.585366	(0.53,0.59]	chr1	50756	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000487002.1:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr13	106663600	106663682	13884921	0	+	0.548781	(0.53,0.59]	chr13	1088370	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC00551:LINC00443:ATP5MC1P5	ENSG00000272274.2:ENSG00000230156.3:ENSG00000227590.2	ENST00000667614.1:ENST00000663663.1:ENST00000658356.1:ENST00000421601.2:ENST00000429024.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr15	36615194	36615294	14867064	0	+	0.54	(0.53,0.59]	chr15	1167216	11	INTRON	INTRON	CDIN1	ENSG00000186073.14	ENST00000566621.6:ENST00000570265.6:ENST00000567573.5:ENST00000564586.5:ENST00000569302.6:ENST00000642817.1:ENST00000643837.1:ENST00000646533.1:ENST00000643822.1:ENST00000646657.1:ENST00000437989.6:ENST00000566807.5:ENST00000643612.1:ENST00000567389.5:ENST00000562877.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr15	77046834	77046927	15388141	0	-	0.537634	(0.53,0.59]	chr15	1216649	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TSPAN3	ENSG00000140391.15	ENST00000267970.9:ENST00000346495.6:ENST00000424443.7:ENST00000560715.5:ENST00000561277.5:ENST00000559494.1:ENST00000558745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr16	69119245	69119342	15993736	0	-	0.56701	(0.53,0.59]	chr16	1284021	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5:ENST00000519534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr17	75020312	75020395	16352949	0	+	0.566265	(0.53,0.59]	chr17	1326881	1	CDS	CDS:UTR3:EXON_MRNA	MRPL58	ENSG00000167862.10	ENST00000301585.10:ENST00000584208.5:ENST00000580800.1:ENST00000583772.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr17	78992114	78992213	16698177	0	-	0.575758	(0.53,0.59]	chr17	1376269	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CANT1	ENSG00000171302.17	ENST00000392446.10:ENST00000302345.6:ENST00000620915.4:ENST00000592228.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr17	82850220	82850320	16386364	0	+	0.54	(0.53,0.59]	chr17	1332978	37	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr2	240961978	240962076	3249126	0	-	0.571429	(0.53,0.59]	chr2	286756	22	INTRON	INTRON	UICLM	ENSG00000233392.5	ENST00000418218.5	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr20	35669522	35669621	17955159	0	-	0.545455	(0.53,0.59]	chr20	1521129	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP1-309K20.6:NFS1	ENSG00000272897.5:ENSG00000244005.13	ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000374092.9:ENST00000374085.5:ENST00000480655.5:ENST00000498084.5:ENST00000397425.5:ENST00000440385.5:ENST00000541387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr3	33087523	33087623	4111877	0	-	0.58	(0.53,0.59]	chr3	343553	99	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr3	47843105	47843180	3456869	0	+	0.573333	(0.53,0.59]	chr3	301414	1	CDS	CDS:UTR3:EXON_MRNA	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr3	100352403	100352502	3634995	0	+	0.575758	(0.53,0.59]	chr3	311628	1	CDS	CDS:EXON_MRNA	NIT2	ENSG00000114021.12	ENST00000465368.5:ENST00000394140.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr3	127608381	127608448	3723466	0	+	0.58209	(0.53,0.59]	chr3	318254	1	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr3	161222013	161222057	3857627	0	+	0.545455	(0.53,0.59]	chr3	327587	1	CDS_START	CDS_START:CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr6	32827672	32827771	7667119	0	-	0.535354	(0.53,0.59]	chr6	586771	24	UTR3	UTR3:EXON_MRNA:INTRON	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr6	43640350	43640433	7159481	0	+	0.566265	(0.53,0.59]	chr6	553385	5	CDS	CDS:EXON_MRNA	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr7	43787964	43788025	8259016	0	+	0.57377	(0.53,0.59]	chr7	628870	2	CDS	CDS:EXON_MRNA	BLVRA	ENSG00000106605.11	ENST00000265523.9:ENST00000402924.5:ENST00000424330.1:ENST00000453612.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr7	74237365	74237442	8855501	0	-	0.532468	(0.53,0.59]	chr7	676320	2	CDS	CDS:UTR3:EXON_MRNA	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000485545.5:ENST00000497430.1:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5:ENST00000479105.6:ENST00000491206.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr7	151099521	151099621	8617688	0	+	0.59	(0.53,0.59]	chr7	658412	86	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chrX	48897917	48898005	18693431	0	+	0.534091	(0.53,0.59]	chrX	1594548	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PQBP1	ENSG00000102103.17	ENST00000651767.1:ENST00000376566.8:ENST00000376563.5:ENST00000447146.7:ENST00000473764.5:ENST00000247140.8:ENST00000472742.5:ENST00000486150.5:ENST00000477997.5:ENST00000470062.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.81839	3.91116	4.00393	0.0184435	0.0108084	0.0945306	0.064368
chr1	23796696	23796782	897440	0	-	0.55814	(0.53,0.59]	chr1	93206	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALE	ENSG00000117308.15	ENST00000481736.5:ENST00000617979.5:ENST00000374497.7:ENST00000456977.5:ENST00000459934.5:ENST00000469556.1:ENST00000429356.5:ENST00000418277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr1	161171033	161171076	498926	0	+	0.55814	(0.53,0.59]	chr1	53962	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPOX	ENSG00000143224.18	ENST00000352210.9:ENST00000367999.9:ENST00000497522.5:ENST00000651150.1:ENST00000652182.1:ENST00000652473.1:ENST00000544598.5:ENST00000495483.5:ENST00000535223.5:ENST00000462866.5:ENST00000652103.1:ENST00000650741.1:ENST00000652297.1:ENST00000537523.5:ENST00000541818.1:ENST00000652100.1:ENST00000537829.1:ENST00000466452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr1	183969404	183969473	1405520	0	-	0.536232	(0.53,0.59]	chr1	142203	3	CDS	CDS:EXON_MRNA	COLGALT2	ENSG00000198756.12	ENST00000649786.1:ENST00000361927.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr11	62594258	62594332	12409368	0	-	0.540541	(0.53,0.59]	chr11	961042	1	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr11	118504669	118504768	12158962	0	+	0.545455	(0.53,0.59]	chr11	937104	24	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr12	48488211	48488307	12862661	0	+	0.5625	(0.53,0.59]	chr12	998690	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	C12orf54:RPS10P20	ENSG00000177627.11:ENSG00000240443.1	ENST00000548364.7:ENST00000380491.7:ENST00000548913.1:ENST00000494130.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_processed_pseudogene	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr14	55191535	55191608	14637834	0	-	0.575342	(0.53,0.59]	chr14	1146788	2	UTR5	UTR5:EXON_MRNA	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7:ENST00000554067.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr15	22914803	22914882	15159364	0	-	0.56962	(0.53,0.59]	chr15	1192939	2	CDS	CDS:EXON_MRNA	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000617556.4:ENST00000610365.4:ENST00000619290.4:ENST00000612288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr16	2598949	2599048	15494187	0	+	0.575758	(0.53,0.59]	chr16	1227686	13	UTR3	UTR3:EXON_MRNA	PDPK1	ENSG00000140992.19	ENST00000268673.11:ENST00000342085.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr17	16034764	16034854	16459454	0	-	0.577778	(0.53,0.59]	chr17	1343671	1	CDS	CDS:EXON_MRNA	NCOR1	ENSG00000141027.21	ENST00000268712.8:ENST00000395857.7:ENST00000395851.5:ENST00000470782.5:ENST00000464381.5:ENST00000580617.5:ENST00000395849.6:ENST00000582565.1:ENST00000579573.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr19	1012517	1012573	17417312	0	-	0.553571	(0.53,0.59]	chr19	1452062	2	CDS	CDS:EXON_MRNA	TMEM259	ENSG00000182087.14	ENST00000593068.7:ENST00000592590.6:ENST00000333175.9:ENST00000356663.8:ENST00000586704.5:ENST00000607316.2:ENST00000589055.3:ENST00000586250.1:ENST00000589831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr19	6212449	6212548	17440802	0	-	0.555556	(0.53,0.59]	chr19	1456576	22	UTR3	UTR3:EXON_MRNA	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr19	48327520	48327534	17365227	0	+	0.571429	(0.53,0.59]	chr19	1441691	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr2	105361282	105361382	2821370	0	-	0.56	(0.53,0.59]	chr2	251841	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr2	190974861	190974932	3087826	0	-	0.535211	(0.53,0.59]	chr2	272825	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2:ENST00000361099.8:ENST00000673762.1:ENST00000540176.6:ENST00000674081.1:ENST00000674028.1:ENST00000673858.1:ENST00000423282.2:ENST00000673863.1:ENST00000673832.1:ENST00000673942.1:ENST00000673777.1:ENST00000673734.1:ENST00000409465.5:ENST00000674080.1:ENST00000673952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr3	49725950	49726048	4175014	0	-	0.530612	(0.53,0.59]	chr3	351099	18	UTR3	UTR3:EXON_MRNA	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr5	115770827	115770908	6160899	0	+	0.54321	(0.53,0.59]	chr5	481059	4	EXON_PSEUDO	EXON_PSEUDO	H3P24	ENSG00000251118.1	ENST00000505098.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr6	26459681	26459754	7102397	0	+	0.561644	(0.53,0.59]	chr6	543118	1	CDS	CDS:EXON_MRNA	BTN2A1	ENSG00000112763.17	ENST00000541522.5:ENST00000377600.7:ENST00000493173.1:ENST00000312541.10:ENST00000429381.5:ENST00000469185.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr7	128305730	128305829	9058566	0	-	0.555556	(0.53,0.59]	chr7	691245	82	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.82407	3.91113	3.99819	0.0179666	0.0111308	0.0918323	0.0665375
chr17	44853575	44853635	16559934	0	-	0.55	(0.53,0.59]	chr17	1359702	2	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.77921	3.911095	5.04298	0.0132865	1.91383e-4	0.0740932	0.0032874
chr4	73090858	73090954	5466119	0	-	0.447917	(0.42,0.455]	chr4	437754	3	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	3.65978	3.9110699999999996	4.16236	2.09396e-5	1.83138e-5	5.04211e-4	4.99708e-4
chr1	155950410	155950482	1312442	0	-	0.583333	(0.53,0.59]	chr1	132911	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ARHGEF2	ENSG00000116584.20	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000470541.6:ENST00000368315.8:ENST00000313667.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.38347	3.91105	4.43863	0.00254763	0.00132446	0.0233955	0.0138834
chr19	15236897	15236996	17484899	0	-	0.535354	(0.53,0.59]	chr19	1465289	15	UTR3	UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.38347	3.91105	4.43863	0.00254763	0.00132446	0.0233955	0.0138834
chr22	21919523	21919622	18443445	0	-	0.575758	(0.53,0.59]	chr22	1572559	2	UTR3	UTR3:EXON_MRNA	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.38347	3.91105	4.43863	0.00254763	0.00132446	0.0233955	0.0138834
chr1	160358171	160358271	496814	0	+	0.53	(0.49,0.53]	chr1	53514	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	104	2	3.89368	3.91104	3.9284	4.1076e-6	5.69067e-8	1.44512e-4	3.43312e-6
chr4	144019250	144019287	5696527	0	-	0.243243	[0,0.29]	chr4	451522	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000638448.1:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	3.24775	3.910955	4.57416	6.75561e-4	2.91652e-4	0.00873562	0.00428484
chr1	55043926	55044010	203635	0	+	0.619048	(0.59,1]	chr1	26118	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000673662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	275	2	3.60006	3.91086	4.22166	6.34812e-7	2.6336e-7	2.71648e-5	1.4355100000000001e-05
chr12	110340910	110340994	13085850	0	+	0.428571	(0.42,0.455]	chr12	1020526	4	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	112	2	2.47379	3.910825	5.34786	0.00996858	9.81426e-12	0.0621728	1.70774e-9
chr1	43360884	43360961	164221	0	+	0.584416	(0.53,0.59]	chr1	20859	3	CDS	CDS:EXON_MRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	3.47419	3.910805	4.34742	8.75273e-4	1.5084e-7	0.0106963	7.98925e-6
chr9	83707679	83707772	10710833	0	-	0.731183	(0.59,1]	chr9	810236	1	UTR5	UTR5:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.68392	3.910355	5.13679	0.0202468	9.28022e-4	0.0984041	0.0111748
chr19	11107452	11107514	17230044	0	+	0.532258	(0.53,0.59]	chr19	1419567	2	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	2.90978	3.91017	4.91056	0.00857883	1.08461e-7	0.0552386	5.98453e-6
chr1	30733535	30733632	915557	0	-	0.43299	(0.42,0.455]	chr1	95861	12	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	3.50825	3.9100599999999996	4.31187	5.86898e-5	1.65296e-7	0.00129243	8.63103e-6
chr7	101206204	101206280	8953619	0	-	0.631579	(0.59,1]	chr7	684646	4	UTR3	UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.84944	3.909795	4.97015	0.0128238	0.00140057	0.0719798	0.0144327
chr21	33552216	33552315	18101179	0	+	0.444444	(0.42,0.455]	chr21	1534527	16	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	3.4231	3.909755	4.39641	0.00112541	4.03242e-6	0.0128481	1.29746e-4
chr17	61982930	61983022	16628616	0	-	0.565217	(0.53,0.59]	chr17	1366889	9	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.54844	3.909655	5.27087	0.00663226	5.9416e-5	0.0461575	0.00130151
chr1	33009931	33010031	924420	0	-	0.39	(0.36,0.39]	chr1	97512	21	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.53311	3.9094800000000003	5.28585	0.00345778	2.81625e-5	0.0293796	6.42183e-4
chr1	21847688	21847764	890892	0	-	0.657895	(0.59,1]	chr1	92352	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	107	2	3.15632	3.90946	4.6626	6.43048e-4	2.85e-6	0.00850474	9.64791e-5
chr3	43576976	43577071	4145658	0	-	0.557895	(0.53,0.59]	chr3	346463	4	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	3.1234	3.909425	4.69545	0.00390623	5.62788e-7	0.0322851	2.45035e-5
chr11	75399517	75399547	12023032	0	+	0.666667	(0.59,1]	chr11	926955	1	UTR5	UTR5:EXON_MRNA	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000530164.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000527273.5:ENST00000524851.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	1712	2	3.40363	3.9093350000000004	4.41504	9.31792e-8	5.15665e-12	5.87995e-6	9.67238e-10
chr5	137752848	137752948	6858088	0	-	0.36	(0.33,0.36]	chr5	524499	73	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	3.09185	3.908915	4.72598	9.32807e-6	3.063e-7	2.86611e-4	1.45748e-5
chr8	47800889	47800986	9815757	0	-	0.412371	(0.39,0.42]	chr8	742535	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.51636	3.908905	4.30145	6.99837e-4	7.39643e-6	0.00846751	2.35326e-4
chr1	149060876	149060967	1284065	0	-	0.450549	(0.42,0.455]	chr1	127547	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF9	ENSG00000269713.7	ENST00000615421.4:ENST00000613595.4:ENST00000584027.8:ENST00000613969.4:ENST00000621074.4:ENST00000621645.4:ENST00000610300.4:ENST00000483630.5:ENST00000611593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.4231	3.90889	4.39468	0.00240483	0.00112541	0.0217482	0.0128481
chr1	15604774	15604864	69365	0	+	0.6	(0.59,1]	chr1	7744	3	EXON_PSEUDO	EXON_PSEUDO	CHCHD2P6	ENSG00000235084.3	ENST00000454346.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	41	2	2.42639	3.908755	5.39112	0.0409084	2.53595e-4	0.163285	0.00381472
chr11	57485095	57485195	12394675	0	-	0.6	(0.59,1]	chr11	958726	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.42639	3.908755	5.39112	0.0409084	2.53595e-4	0.163285	0.00381472
chr16	16124788	16124851	15568581	0	+	0.619048	(0.59,1]	chr16	1232830	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.42639	3.908755	5.39112	0.0409084	2.53595e-4	0.163285	0.00381472
chr3	48601046	48601118	4168722	0	-	0.611111	(0.59,1]	chr3	349586	2	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000415995.5:ENST00000460105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.42639	3.908755	5.39112	0.0409084	2.53595e-4	0.163285	0.00381472
chr1	203722618	203722689	669701	0	+	0.464789	(0.455,0.49]	chr1	67484	3	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.89235	3.90849	3.92463	0.0113417	9.60445e-5	0.0665375	0.00190731
chr1	143904110	143904206	1261677	0	-	0.4375	(0.42,0.455]	chr1	123668	19	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BP2:H3-2	ENSG00000234571.2:ENSG00000273213.4	ENST00000609585.1:ENST00000669710.1:ENST00000650532.1:ENST00000609879.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.05889	3.908085	4.75728	0.00524205	5.3817e-4	0.0399155	0.00686676
chr16	85806774	85806874	15798376	0	+	0.54	(0.53,0.59]	chr16	1257157	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000568339.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000561569.5:ENST00000566405.5:ENST00000564544.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	244	2	3.4326	3.908085	4.38357	1.4648e-5	1.17818e-11	4.12508e-4	2.00217e-9
chr5	72220343	72220437	6631315	0	-	0.446809	(0.42,0.455]	chr5	512531	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000515226.5:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	3.05889	3.908085	4.75728	0.00524205	5.3817e-4	0.0399155	0.00686676
chr7	74235574	74235645	8855482	0	-	0.43662	(0.42,0.455]	chr7	676314	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RFC2	ENSG00000049541.11	ENST00000352131.7:ENST00000055077.8:ENST00000621097.4:ENST00000485545.5:ENST00000497430.1:ENST00000494019.5:ENST00000470266.5:ENST00000480432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.05889	3.908085	4.75728	0.00524205	5.3817e-4	0.0399155	0.00686676
chr11	65997619	65997717	12423530	0	-	0.5	(0.49,0.53]	chr11	964316	12	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.69746	3.9080700000000004	5.11868	0.00380414	9.66505e-5	0.0317723	0.00175267
chr2	75063747	75063847	2745306	0	-	0.4	(0.39,0.42]	chr2	244836	96	INTRON	INTRON	TACR1	ENSG00000115353.11	ENST00000305249.10:ENST00000409848.3	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	1.94226	3.9079800000000002	5.8737	0.01151	9.17355e-12	0.0679423	1.61071e-9
chr5	86619469	86619562	6073047	0	+	0.397849	(0.39,0.42]	chr5	476390	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COX7C	ENSG00000127184.13	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1:ENST00000510447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.74243	3.9075050000000005	5.07258	0.00369167	1.94725e-8	0.030936	1.37715e-6
chr17	49827700	49827799	16260196	0	+	0.50505	(0.49,0.53]	chr17	1318079	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000510819.5:ENST00000424009.6:ENST00000435742.2:ENST00000513980.5:ENST00000503101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.92082	3.907435	4.89405	0.00827037	2.57983e-4	0.0534766	0.00419998
chr5	72198298	72198396	6027778	0	+	0.520408	(0.49,0.53]	chr5	472560	46	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.25514	3.907215	4.55929	0.00227467	0.00116196	0.0209546	0.0130851
chr6	34744274	34744374	7125487	0	+	0.51	(0.49,0.53]	chr6	548353	2	EXON_PSEUDO	EXON_PSEUDO	RP3-375P9.2	ENSG00000217130.1	ENST00000408001.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	3.25514	3.907215	4.55929	0.00227467	0.00116196	0.0209546	0.0130851
chr11	14493726	14493811	12281930	0	-	0.341176	(0.33,0.36]	chr11	949669	2	CDS	CDS:UTR3:EXON_MRNA	COPB1:RP11-140L24.4	ENSG00000129083.13:ENSG00000256206.2	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5:ENST00000529866.5:ENST00000534771.1:ENST00000555531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.46908	3.9069599999999998	4.34484	0.00114872	5.33265e-6	0.0130528	1.63127e-4
chr9	107330422	107330518	10410550	0	+	0.364583	(0.36,0.39]	chr9	784033	9	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.94781	3.9069200000000004	4.86603	3.10006e-4	1.68962e-4	0.0044733	0.00297945
chr17	76565154	76565251	16359201	0	+	0.587629	(0.53,0.59]	chr17	1328581	22	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000667091.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	4	87	2	3.49159	3.906855	4.32212	6.29049e-5	1.84692e-7	0.00135218	9.51079e-6
chr1	108637832	108637931	394962	0	+	0.484848	(0.455,0.49]	chr1	38052	28	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.81275	3.90672	4.00069	0.0138827	5.13615e-5	0.0760883	0.00104999
chr11	90284077	90284172	12059340	0	+	0.315789	(0.29,0.33]	chr11	929980	17	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	32	2	3.62683	3.906635	4.18644	6.18968e-4	1.56826e-5	0.00822794	3.99464e-4
chr12	7813935	7814030	13192347	0	-	0.494737	(0.49,0.53]	chr12	1033373	16	UTR3	UTR3:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr16	88455074	88455173	15805214	0	+	0.525253	(0.49,0.53]	chr16	1257836	10	INTRON	INTRON	ZFPM1	ENSG00000179588.9	ENST00000319555.8:ENST00000562417.1:ENST00000569086.5:ENST00000562437.2:ENST00000563351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr17	72553334	72553433	16668376	0	-	0.50505	(0.49,0.53]	chr17	1371647	189	INTRON	INTRON	LINC00511	ENSG00000227036.8	ENST00000648631.1:ENST00000648248.1:ENST00000650419.1:ENST00000581801.6:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000649793.2:ENST00000650131.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr2	240961585	240961683	3249122	0	-	0.510204	(0.49,0.53]	chr2	286756	18	INTRON	INTRON	UICLM	ENSG00000233392.5	ENST00000418218.5	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr22	38818549	38818648	18512178	0	-	0.525253	(0.49,0.53]	chr22	1580427	2	UTR3	UTR3:EXON_MRNA	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr3	119544628	119544708	4399668	0	-	0.5	(0.49,0.53]	chr3	364799	2	CDS	CDS:EXON_MRNA	CD80	ENSG00000121594.12	ENST00000264246.8:ENST00000478182.5:ENST00000383669.3:ENST00000463729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr3	198038964	198039063	3993831	0	+	0.525253	(0.49,0.53]	chr3	336723	4	UTR3	UTR3:EXON_MRNA	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000451139.6:ENST00000420910.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr3	198040549	198040648	3993847	0	+	0.525253	(0.49,0.53]	chr3	336723	20	UTR3	UTR3:EXON_MRNA	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000451139.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr5	176486421	176486489	6402463	0	+	0.5	(0.49,0.53]	chr5	497337	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr6	44254285	44254369	7710353	0	-	0.511905	(0.49,0.53]	chr6	591838	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	MIR4647:SLC35B2	ENSG00000284427.1:ENSG00000157593.19	ENST00000583964.1:ENST00000495706.1:ENST00000393810.5:ENST00000393812.4:ENST00000615337.4:ENST00000538577.5:ENST00000537814.2:ENST00000619636.4	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr8	35525371	35525469	9786515	0	-	0.5	(0.49,0.53]	chr8	740155	3	EXON_PSEUDO	EXON_PSEUDO	LSM12P1	ENSG00000232024.2	ENST00000411836.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.69037	3.9065000000000003	4.12263	0.0226513	0.00591451	0.10505	0.0427941
chr11	67682771	67682866	12428893	0	-	0.463158	(0.455,0.49]	chr11	965763	1	EXON_PSEUDO	EXON_PSEUDO	RPL37P2	ENSG00000239559.2	ENST00000472498.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	208	2	3.86847	3.906335	3.9442	4.22539e-8	3.37144e-10	2.95174e-6	4.00216e-8
chr5	138188977	138189077	6860856	0	-	0.52	(0.49,0.53]	chr5	524904	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000464806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	3.80176	3.90626	4.01076	1.7263e-6	9.10034e-7	6.99335e-5	3.69437e-5
chr19	54174408	54174431	17627661	0	-	0.652174	(0.59,1]	chr19	1488018	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.9891200000000002	3.906185	4.82325	0.00823979	0.002381	0.0540283	0.0216895
chr11	125602807	125602907	12194345	0	+	0.48	(0.455,0.49]	chr11	940728	1	CDS_START	CDS_START:CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1:ENST00000526213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	247	2	3.47521	3.906135	4.33706	7.03548e-9	4.53367e-11	5.72423e-7	7.38841e-9
chr1	44008509	44008609	969467	0	-	0.53	(0.49,0.53]	chr1	102280	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6:ENST00000492434.6:ENST00000528803.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr1	111147893	111147973	405840	0	+	0.525	(0.49,0.53]	chr1	39871	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000480324.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr1	171796656	171796756	538209	0	+	0.53	(0.49,0.53]	chr1	57844	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EEF1AKNMT	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000466643.1:ENST00000476386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr11	46508190	46508280	12382185	0	-	0.522222	(0.49,0.53]	chr11	955840	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000529558.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr11	66845165	66845237	11992838	0	+	0.513889	(0.49,0.53]	chr11	922377	1	CDS	CDS:UTR3:EXON_MRNA	RCE1	ENSG00000173653.8	ENST00000533277.5:ENST00000524506.5:ENST00000309657.8:ENST00000524849.5:ENST00000525356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr11	70658229	70658329	12437925	0	-	0.52	(0.49,0.53]	chr11	966741	34	INTRON	INTRON	SHANK2	ENSG00000162105.20	ENST00000601538.6:ENST00000409161.5:ENST00000449833.6:ENST00000656230.1:ENST00000659264.1:ENST00000338508.8:ENST00000357171.7:ENST00000412252.5:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000445654.2:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr14	74663620	74663719	14706750	0	-	0.50505	(0.49,0.53]	chr14	1151975	25	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AREL1	ENSG00000119682.18	ENST00000554070.1:ENST00000557401.5:ENST00000356357.9:ENST00000681099.1:ENST00000681535.1:ENST00000681599.1:ENST00000555330.5:ENST00000680030.1:ENST00000557688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr16	54852410	54852507	15953300	0	-	0.515464	(0.49,0.53]	chr16	1279489	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.10	ENST00000637011.1:ENST00000613942.2:ENST00000658082.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr16	87975707	87975804	15802755	0	+	0.525773	(0.49,0.53]	chr16	1257667	1	INTRON	INTRON	BANP	ENSG00000172530.21	ENST00000569400.5:ENST00000488074.1:ENST00000423252.5:ENST00000286122.11:ENST00000439677.5:ENST00000393208.6:ENST00000682872.1:ENST00000479780.6:ENST00000454563.5:ENST00000459966.5:ENST00000412691.5:ENST00000626016.2:ENST00000485772.5:ENST00000466197.5:ENST00000355022.8:ENST00000538234.5:ENST00000436970.5:ENST00000436274.5:ENST00000456902.5:ENST00000393207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr19	2737098	2737157	17425592	0	-	0.525424	(0.49,0.53]	chr19	1453661	2	CDS	CDS:EXON_MRNA	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9:ENST00000589363.5:ENST00000589166.1:ENST00000455372.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr19	44888279	44888379	17349485	0	+	0.52	(0.49,0.53]	chr19	1439180	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252483.10:ENST00000592018.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr2	20322600	20322699	2541387	0	-	0.50505	(0.49,0.53]	chr2	228596	36	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr2	23944266	23944351	1676809	0	+	0.505882	(0.49,0.53]	chr2	163939	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	UBXN2A:SDHCP3	ENSG00000173960.14:ENSG00000234946.1	ENST00000446425.2:ENST00000404924.5:ENST00000309033.5:ENST00000445371.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr2	194187471	194187564	2285993	0	+	0.516129	(0.49,0.53]	chr2	207399	2	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P47	ENSG00000236695.1	ENST00000453073.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr20	1125497	1125573	17645232	0	+	0.513158	(0.49,0.53]	chr20	1491503	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000381899.8:ENST00000479715.5:ENST00000246015.8:ENST00000335877.11:ENST00000478004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr20	18554312	18554390	17719825	0	+	0.525641	(0.49,0.53]	chr20	1495739	2	CDS	CDS:EXON_MRNA	SEC23B	ENSG00000101310.17	ENST00000336714.8:ENST00000262544.6:ENST00000643747.1:ENST00000650089.1:ENST00000377465.6:ENST00000422877.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr3	49123446	49123538	4172738	0	-	0.5	(0.49,0.53]	chr3	350541	1	CDS	CDS:EXON_MRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000469665.1:ENST00000477225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr5	71632120	71632185	6026545	0	+	0.492308	(0.49,0.53]	chr5	472445	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000683665.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000510895.7:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000629193.3:ENST00000683429.1:ENST00000340941.11:ENST00000509358.7:ENST00000505435.4:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000684310.1:ENST00000509539.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr7	6702389	6702487	8665721	0	-	0.520408	(0.49,0.53]	chr7	663005	16	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr7	139562963	139563063	9103288	0	-	0.5	(0.49,0.53]	chr7	694628	15	UTR3	UTR3:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr9	128808762	128808860	10481483	0	+	0.520408	(0.49,0.53]	chr9	790856	10	UTR3	UTR3:EXON_MRNA	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr9	136423363	136423462	10512319	0	+	0.50505	(0.49,0.53]	chr9	796224	2	UTR3	UTR3:EXON_MRNA	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chrX	48957813	48957894	19064039	0	-	0.493827	(0.49,0.53]	chrX	1620663	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	OTUD5	ENSG00000068308.14	ENST00000610466.4:ENST00000428668.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chrX	71109268	71109329	19106743	0	-	0.52459	(0.49,0.53]	chrX	1625353	1	CDS	CDS:UTR5:EXON_MRNA	RP5-1091N2.12:IL2RG	ENSG00000285171.1:ENSG00000147168.13	ENST00000644911.1:ENST00000645518.1:ENST00000646106.1:ENST00000646505.1:ENST00000644022.1:ENST00000644708.1:ENST00000645266.1:ENST00000647492.1:ENST00000642473.1:ENST00000374202.7:ENST00000276110.6:ENST00000374188.7:ENST00000512747.3:ENST00000482750.5:ENST00000456850.6:ENST00000464642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chrX	101358309	101358373	19151294	0	-	0.5	(0.49,0.53]	chrX	1628596	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BTK	ENSG00000010671.16	ENST00000621635.4:ENST00000372880.5:ENST00000618050.4:ENST00000308731.8:ENST00000470329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.73494	3.906065	4.07719	0.0189345	0.0074411	0.0934721	0.0492519
chr8	125005615	125005707	9595421	0	+	0.478261	(0.455,0.49]	chr8	727905	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	7	145	2	3.02161	3.906035	4.79046	2.07727e-4	1.1079e-11	0.00351752	1.90501e-9
chr1	202855896	202855983	1452610	0	-	0.54023	(0.53,0.59]	chr1	145941	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	TUBA5P	ENSG00000214796.8	ENST00000443294.5:ENST00000449915.1:ENST00000442868.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	31	2	3.80806	3.905995	4.00393	0.0108084	1.65022e-4	0.064368	0.00269147
chr1	30907449	30907549	916252	0	-	0.57	(0.53,0.59]	chr1	95950	262	INTRON	INTRON	SDC3	ENSG00000162512.16	ENST00000339394.7	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr11	61353783	61353812	12404418	0	-	0.586207	(0.53,0.59]	chr11	960323	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000540139.5:ENST00000542361.5:ENST00000537364.5:ENST00000535177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr11	62714606	62714704	12410556	0	-	0.571429	(0.53,0.59]	chr11	961490	21	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr14	22920817	22920903	14527884	0	-	0.546512	(0.53,0.59]	chr14	1138117	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000557443.5:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr16	22533829	22533927	15591464	0	+	0.581633	(0.53,0.59]	chr16	1236299	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr17	44380437	44380490	16558088	0	-	0.54717	(0.53,0.59]	chr17	1359468	2	CDS	CDS:EXON_MRNA	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000592462.5:ENST00000592226.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr18	856525	856611	16717111	0	+	0.569767	(0.53,0.59]	chr18	1379327	1	EXON_PSEUDO	EXON_PSEUDO	RP11-672L10.5	ENSG00000264179.1	ENST00000584430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr19	4859897	4859997	17434225	0	-	0.59	(0.53,0.59]	chr19	1455577	1	CDS_START	CDS_START:CDS:EXON_MRNA	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000585479.5:ENST00000589034.5:ENST00000589494.1:ENST00000587462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr19	45364647	45364737	17587649	0	-	0.555556	(0.53,0.59]	chr19	1479983	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391941.6:ENST00000485403.6:ENST00000586131.6:ENST00000591309.5:ENST00000586737.5:ENST00000586441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr3	198040747	198040846	3993849	0	+	0.535354	(0.53,0.59]	chr3	336723	22	UTR3	UTR3:EXON_MRNA	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000451139.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr9	128808565	128808663	10481481	0	+	0.571429	(0.53,0.59]	chr9	790856	8	UTR3	UTR3:EXON_MRNA	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chrX	78020243	78020320	18746064	0	+	0.532468	(0.53,0.59]	chrX	1599731	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	16	2	3.3733	3.905965	4.43863	0.0529193	0.00254763	0.18423900000000001	0.0233955
chr16	68122553	68122648	15714218	0	+	0.484211	(0.455,0.49]	chr16	1250981	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	190	2	3.63256	3.9059649999999997	4.17937	1.7611e-7	1.18783e-10	1.02865e-5	1.58052e-8
chr16	22346122	22346215	15891346	0	-	0.483871	(0.455,0.49]	chr16	1271755	3	UTR3	UTR3:EXON_MRNA	CDR2	ENSG00000140743.8	ENST00000268383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.30384	3.905945	4.50805	0.00184955	0.00122223	0.0178046	0.0135383
chr16	70539103	70539155	15729819	0	+	0.461538	(0.455,0.49]	chr16	1252923	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.30384	3.905945	4.50805	0.00184955	0.00122223	0.0178046	0.0135383
chr17	68531045	68531144	16337424	0	+	0.323232	(0.29,0.33]	chr17	1325397	7	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000588188.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	3.76009	3.90593	4.05177	3.08518e-4	3.72769e-5	0.00476847	8.08834e-4
chr19	4658004	4658084	17433065	0	-	0.6	(0.59,1]	chr19	1455329	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MYDGF	ENSG00000074842.8	ENST00000599761.5:ENST00000262947.8	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	3.27003	3.90593	4.54183	0.0070583	3.45884e-4	0.0478044	0.00486309
chr19	34022655	34022751	17541936	0	-	0.53125	(0.53,0.59]	chr19	1472120	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC005792.1:RPS4XP20	ENSG00000287526.1:ENSG00000249987.1	ENST00000657364.1:ENST00000505751.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	55	2	3.21941	3.905925	4.59244	0.00266171	1.19382e-6	0.0240332	4.64223e-5
chr5	69174876	69174955	6019341	0	+	0.405063	(0.39,0.42]	chr5	471243	1	CDS	CDS:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	3.23057	3.905805	4.58104	3.34829e-4	1.0275e-6	0.00509483	4.08333e-5
chr1	111140027	111140115	1224175	0	-	0.647727	(0.59,1]	chr1	119702	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000496430.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	3.4666	3.905735	4.34487	0.0123678	0.00133574	0.0705839	0.0139317
chr19	35267286	35267376	17304110	0	+	0.722222	(0.59,1]	chr19	1430698	3	CDS	CDS:EXON_MRNA	LSR	ENSG00000105699.17	ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.4666	3.905735	4.34487	0.0123678	0.00133574	0.0705839	0.0139317
chr14	102033268	102033340	14495707	0	+	0.5	(0.49,0.53]	chr14	1133196	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.42954	3.90573	4.38192	0.00259709	0.00105489	0.0229695	0.0123035
chr1	236483144	236483244	769250	0	+	0.49	(0.455,0.49]	chr1	77526	6	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	2	30	2	2.83859	3.905585	4.97258	0.00215336	1.84876e-4	0.0208395	0.00296795
chr6	33313216	33313303	7669344	0	-	0.597701	(0.59,1]	chr6	587587	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1:ENST00000476333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	125	2	3.15812	3.90555	4.65298	1.46709e-4	3.73496e-6	0.0024610500000000002	1.32675e-4
chr1	6529082	6529171	845075	0	-	0.52809	(0.49,0.53]	chr1	85320	2	CDS	CDS:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.8671	3.9053649999999998	4.94363	0.0100489	2.3417e-4	0.0623334	0.00355764
chr2	65018070	65018167	1853331	0	+	0.525773	(0.49,0.53]	chr2	175843	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC1A4	ENSG00000115902.11	ENST00000531327.5:ENST00000471551.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.8671	3.9053649999999998	4.94363	0.0100489	2.3417e-4	0.0623334	0.00355764
chr8	47933964	47934027	9817160	0	-	0.492063	(0.49,0.53]	chr8	742861	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.8671	3.9053649999999998	4.94363	0.0100489	2.3417e-4	0.0623334	0.00355764
chrX	121204049	121204145	19198099	0	-	0.5	(0.49,0.53]	chrX	1632450	10	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	2.8671	3.9053649999999998	4.94363	0.0100489	2.3417e-4	0.0623334	0.00355764
chr1	99729649	99729748	1197556	0	-	0.474747	(0.455,0.49]	chr1	116884	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	3.63654	3.9053050000000002	4.17407	1.754e-5	3.17743e-6	4.38078e-4	1.16721e-4
chr1	207767103	207767195	689937	0	+	0.456522	(0.455,0.49]	chr1	70081	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	372	2	3.60484	3.905245	4.20565	3.58115e-10	5.36748e-12	4.22665e-8	1.08741e-9
chrM	3011	3109	19377169	0	+	0.438776	(0.42,0.455]	chrM	1649798	26	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	1541	20765	2	3.66775	3.90522	4.14269	1e-12	1e-12	2.46312e-10	2.25522e-10
chr1	109313942	109314042	1219469	0	-	0.52	(0.49,0.53]	chr1	118935	45	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000485149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	2.26641	3.9051549999999997	5.5439	0.0190546	8.44877e-6	0.093872	2.39255e-4
chr15	89188192	89188247	15093366	0	+	0.509091	(0.49,0.53]	chr15	1187080	1	CDS	CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10:ENST00000568308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.26641	3.9051549999999997	5.5439	0.0190546	8.44877e-6	0.093872	2.39255e-4
chr1	171684250	171684344	1368508	0	-	0.446809	(0.42,0.455]	chr1	139450	13	EXON_PSEUDO	EXON_PSEUDO	RPL4P3	ENSG00000230364.1	ENST00000428881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	68	2	2.76161	3.905055	5.0485	9.19052e-4	2.60143e-8	0.0111046	1.76574e-6
chr2	38481850	38481945	1747999	0	+	0.463158	(0.455,0.49]	chr2	169990	1	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	153	2	3.59751	3.9049000000000005	4.21229	4.2755e-6	2.39199e-10	1.49387e-4	2.95721e-8
chr17	68529919	68529978	16337412	0	+	0.491525	(0.49,0.53]	chr17	1325392	1	CDS	CDS:UTR3:EXON_MRNA	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5:ENST00000586541.5:ENST00000585907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.52637	3.904845	4.28332	0.00338762	6.68602e-4	0.0288632	0.00820018
chr6	159684943	159685033	8048256	0	-	0.5	(0.49,0.53]	chr6	615191	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000535459.5:ENST00000541573.5:ENST00000540491.1:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.52637	3.904845	4.28332	0.00338762	6.68602e-4	0.0288632	0.00820018
chr15	42227710	42227769	15239006	0	-	0.40678	(0.39,0.42]	chr15	1200195	1	CDS	CDS:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000564329.1:ENST00000566014.1:ENST00000562946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.66467	3.90472	4.14477	3.60066e-4	2.09513e-5	0.00544157	5.04211e-4
chrX	16858675	16858762	18971831	0	-	0.413793	(0.39,0.42]	chrX	1615464	1	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.66467	3.90472	4.14477	3.60066e-4	2.09513e-5	0.00544157	5.04211e-4
chr3	13323308	13323370	4046261	0	-	0.548387	(0.53,0.59]	chr3	339540	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	3.80527	3.9046000000000003	4.00393	0.0108084	9.95548e-7	0.064368	3.97538e-5
chr10	79310923	79311010	11148554	0	+	0.62069	(0.59,1]	chr10	847401	1	CDS	CDS:EXON_MRNA:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.36223	3.90447	4.44671	0.00931497	0.00203572	0.0586162	0.0192213
chr1	205088296	205088394	1459086	0	-	0.367347	(0.36,0.39]	chr1	147068	23	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.94286	3.904445	4.86603	0.00128446	1.68962e-4	0.0136229	0.00297945
chr17	51160030	51160081	16266525	0	+	0.54902	(0.53,0.59]	chr17	1319583	2	CDS	CDS:EXON_MRNA	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000480143.5:ENST00000512768.1:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	3.32707	3.90429	4.48151	2.9609e-5	2.61211e-6	7.34242e-4	8.99269e-5
chr1	235111479	235111576	1560087	0	-	0.42268	(0.42,0.455]	chr1	156012	23	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	10	152	2	3.33715	3.90426	4.47137	8.31419e-7	3.26218e-10	3.79504e-5	3.88834e-8
chr7	66955522	66955619	8307711	0	+	0.474227	(0.455,0.49]	chr7	633399	1	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.07467	3.9041449999999998	5.73362	0.00905778	1.35346e-6	0.0574177	5.67444e-5
chr1	43976301	43976379	169368	0	+	0.551282	(0.53,0.59]	chr1	21846	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0B	ENSG00000117410.14	ENST00000472505.6:ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000461670.5:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498208.1:ENST00000532072.1:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	123	2	3.45404	3.903825	4.35361	1.27275e-5	1.04316e-8	3.35074e-4	8.86805e-7
chr3	4984651	4984747	3277657	0	+	0.489583	(0.455,0.49]	chr3	288722	11	UTR3	UTR3:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.48005	3.9038199999999996	5.32759	0.00142356	1.92345e-5	0.0146333	5.18397e-4
chrX	46440348	46440439	19057495	0	-	0.571429	(0.53,0.59]	chrX	1619621	8	EXON_PSEUDO	EXON_PSEUDO	GAPDHP65	ENSG00000235587.2	ENST00000425487.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	64	2	3.44509	3.9032099999999996	4.36133	8.31409e-5	5.91026e-6	0.00171126	1.77972e-4
chr8	47966259	47966333	9316173	0	+	0.648649	(0.59,1]	chr8	713541	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000519138.1:ENST00000647877.1:ENST00000520637.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	2.6406	3.90318	5.16576	0.00193045	6.55716e-4	0.0192201	0.0080931
chr3	116644701	116644801	4379867	0	-	0.36	(0.33,0.36]	chr3	364390	620	INTRON	INTRON	LSAMP	ENSG00000185565.12	ENST00000474851.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.15976	3.9026449999999997	4.64553	0.00437542	6.69086e-4	0.0340502	0.00820018
chr17	42307401	42307496	16228097	0	+	0.557895	(0.53,0.59]	chr17	1312836	1	CDS	CDS:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000468096.5:ENST00000591556.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	3.82407	3.90261	3.98115	0.0179666	6.28226e-5	0.0918323	0.00124286
chr1	108779347	108779410	395855	0	+	0.380952	(0.36,0.39]	chr1	38225	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STXBP3	ENSG00000116266.11	ENST00000370008.4:ENST00000485167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr10	87508434	87508533	11173464	0	+	0.363636	(0.36,0.39]	chr10	849110	2	CDS	CDS:EXON_MRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr11	70383470	70383567	12006714	0	+	0.371134	(0.36,0.39]	chr11	924801	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000530548.5:ENST00000531657.1:ENST00000528853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr12	50745817	50745915	12874686	0	+	0.367347	(0.36,0.39]	chr12	1000428	11	UTR3	UTR3:EXON_MRNA	DIP2B	ENSG00000066084.13	ENST00000301180.10	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr13	45267304	45267376	13718313	0	+	0.375	(0.36,0.39]	chr13	1080661	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTF2F2	ENSG00000188342.12	ENST00000340473.8:ENST00000494087.5:ENST00000461904.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr16	15038130	15038210	15863743	0	-	0.3875	(0.36,0.39]	chr16	1267509	1	CDS	CDS:UTR3:EXON_MRNA	NTAN1	ENSG00000157045.9	ENST00000624579.3:ENST00000622833.4:ENST00000566542.5:ENST00000287706.8:ENST00000565187.5:ENST00000568738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr17	47928390	47928484	16252781	0	+	0.361702	(0.36,0.39]	chr17	1316953	7	UTR3	UTR3:EXON_MRNA	SP2	ENSG00000167182.15	ENST00000376741.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr17	66315017	66315117	16321840	0	+	0.37	(0.36,0.39]	chr17	1324464	85	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr2	99344373	99344473	1953647	0	+	0.39	(0.36,0.39]	chr2	185495	64	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr20	58671397	58671497	17839959	0	+	0.39	(0.36,0.39]	chr20	1508614	1	SS5_PROX	SS5_PROX:INTRON	STX16:STX16-NPEPL1	ENSG00000124222.22:ENSG00000254995.4	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000476384.5:ENST00000483434.5:ENST00000490700.5:ENST00000530122.1:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8:ENST00000464640.5:ENST00000438253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr21	28936611	28936697	18201155	0	-	0.383721	(0.36,0.39]	chr21	1544508	2	CDS	CDS:EXON_MRNA	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr21	33577119	33577209	18101456	0	+	0.388889	(0.36,0.39]	chr21	1534606	7	UTR3	UTR3:EXON_MRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000478183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr22	16405329	16405417	18285451	0	+	0.386364	(0.36,0.39]	chr22	1551583	1	EXON_PSEUDO	EXON_PSEUDO	LA16c-17H1.3	ENSG00000226160.1	ENST00000427602.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr22	40547310	40547410	18516441	0	-	0.39	(0.36,0.39]	chr22	1580824	136	INTRON	INTRON	MRTFA	ENSG00000196588.20	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000402042.7:ENST00000618417.1:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr3	14143183	14143283	3319508	0	+	0.39	(0.36,0.39]	chr3	292109	15	UTR3	UTR3:EXON_MRNA:INTRON	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1:ENST00000601399.3:ENST00000626721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr6	97144433	97144531	7854149	0	-	0.377551	(0.36,0.39]	chr6	601416	24	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr6	149504494	149504589	8017089	0	-	0.368421	(0.36,0.39]	chr6	612493	1	UTR3	UTR3:EXON_MRNA	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr9	77718068	77718166	10699809	0	-	0.367347	(0.36,0.39]	chr9	809634	21	UTR3	UTR3:EXON_MRNA	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chrX	123602353	123602452	19198156	0	-	0.373737	(0.36,0.39]	chrX	1632458	19	UTR3	UTR3:EXON_MRNA:INTRON	THOC2	ENSG00000125676.20	ENST00000448128.5:ENST00000245838.13:ENST00000441692.5:ENST00000492203.1:ENST00000497887.5:ENST00000618150.4:ENST00000432353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.77302	3.9026099999999997	4.0322	0.0162599	0.00588589	0.0866586	0.0427941
chr4	139292529	139292549	5669715	0	-	0.25	[0,0.29]	chr4	450422	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFC1	ENSG00000109390.13	ENST00000503997.5:ENST00000394228.5:ENST00000539387.5:ENST00000539002.5:ENST00000544855.5:ENST00000394223.2:ENST00000505036.5:ENST00000394225.6:ENST00000503453.5:ENST00000676245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.0735	3.90259	4.73168	0.00785095	3.88478e-4	0.0520241	0.00534839
chr15	29718750	29718847	15183967	0	-	0.525773	(0.49,0.53]	chr15	1195115	6	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.68246	3.902545	4.12263	0.00591451	3.06313e-4	0.0427941	0.00442973
chr8	135742418	135742495	10111761	0	-	0.506494	(0.49,0.53]	chr8	760054	2	EXON_SMALL	EXON_SMALL	RNU1-35P	ENSG00000199652.2	ENST00000362782.2	snRNA	snRNA	snRNA	snRNA	1	27	2	3.68246	3.902545	4.12263	0.00591451	3.06313e-4	0.0427941	0.00442973
chr9	35717618	35717702	10639692	0	-	0.52381	(0.49,0.53]	chr9	805110	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.68246	3.902545	4.12263	0.00591451	3.06313e-4	0.0427941	0.00442973
chr11	125584047	125584138	12194214	0	+	0.296703	(0.29,0.33]	chr11	940681	5	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000278903.11:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	3.88016	3.9025350000000003	3.92491	6.01019e-6	4.59202e-7	1.97805e-4	2.05816e-5
chr2	216116658	216116750	2379810	0	+	0.456522	(0.455,0.49]	chr2	213766	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.74211	3.9024650000000003	5.06282	0.00330545	1.16789e-4	0.028478	0.0020505
chr22	41160323	41160419	18378780	0	+	0.385417	(0.36,0.39]	chr22	1564170	20	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000635552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	3.33241	3.90229	4.47217	0.00193631	2.19864e-6	0.0192272	7.75596e-5
chr10	74105125	74105201	11117510	0	+	0.552632	(0.53,0.59]	chr10	846275	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	3.86809	3.902285	3.93648	1.18973e-4	8.06385e-5	0.00207755	0.00167444
chr17	35566594	35566672	16205934	0	+	0.346154	(0.33,0.36]	chr17	1308978	2	EXON_PSEUDO	EXON_PSEUDO	RP11-1094M14.1	ENSG00000242660.1	ENST00000495111.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	77	2	3.13916	3.9021850000000002	4.66521	4.50423e-5	6.26468e-9	0.0010411	5.16133e-7
chr19	39435895	39435949	17563253	0	-	0.685185	(0.59,1]	chr19	1475635	1	UTR5	UTR5:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	113	3463	2	3.04361	3.9021850000000002	4.76076	2.04395e-7	1e-12	1.15855e-5	2.25522e-10
chr15	41278804	41278889	14885218	0	+	0.517647	(0.49,0.53]	chr15	1169238	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	3.73494	3.90218	4.06942	0.0189345	3.44689e-5	0.0934721	7.57659e-4
chr8	96235511	96235530	9962141	0	-	0.631579	(0.59,1]	chr8	751587	1	CDS_START	CDS_START:CDS:EXON_MRNA	UQCRB	ENSG00000156467.10	ENST00000287022.10:ENST00000517603.5:ENST00000521036.5:ENST00000518876.1:ENST00000518406.5:ENST00000523920.1:ENST00000519322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.5215	3.90217	5.28284	0.032241	4.04404e-4	0.135671	0.00550292
chrX	155026843	155026938	18918858	0	+	0.715789	(0.59,1]	chrX	1612345	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FUNDC2	ENSG00000165775.18	ENST00000475165.5:ENST00000369498.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.5215	3.90217	5.28284	0.032241	4.04404e-4	0.135671	0.00550292
chr1	28096130	28096227	912446	0	-	0.391753	(0.39,0.42]	chr1	95414	5	EXON_PSEUDO	EXON_PSEUDO	SPCS2P4	ENSG00000228589.3	ENST00000436160.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	30	2	2.34349	3.902065	5.46064	0.0169272	1.15573e-5	0.0890655	3.09736e-4
chrX	108087685	108087768	19163750	0	-	0.409639	(0.39,0.42]	chrX	1629972	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMD10	ENSG00000101843.19	ENST00000217958.8:ENST00000372296.5:ENST00000372295.5:ENST00000361815.9:ENST00000340200.5:ENST00000553388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.34349	3.902065	5.46064	0.0169272	1.15573e-5	0.0890655	3.09736e-4
chr2	171966460	171966513	2208550	0	+	0.433962	(0.42,0.455]	chr2	202148	2	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.89192	3.902025	4.91213	0.00157686	1.75074e-4	0.015761	0.00306313
chr11	64803783	64803875	12419568	0	-	0.445652	(0.42,0.455]	chr11	963063	4	UTR3	UTR3:EXON_MRNA	MEN1	ENSG00000133895.18	ENST00000377316.6:ENST00000315422.9:ENST00000377313.6:ENST00000312049.11:ENST00000377326.7:ENST00000377321.5:ENST00000450708.7:ENST00000478548.3:ENST00000672304.1:ENST00000394376.6:ENST00000440873.6:ENST00000671939.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.71365	3.901725	4.0898	0.00698074	2.63375e-4	0.0473262	0.00427022
chr12	56597934	56598032	13351661	0	-	0.387755	(0.36,0.39]	chr12	1051592	25	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.64731	3.901705	4.1561	2.27851e-5	2.14257e-5	5.67278e-4	5.41358e-4
chr1	173487734	173487763	548619	0	+	0.517241	(0.49,0.53]	chr1	58303	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	97	2	3.23006	3.90165	4.57324	0.00253719	1.03876e-9	0.0233955	1.08471e-7
chrX	154779077	154779176	19279806	0	-	0.50505	(0.49,0.53]	chrX	1638724	5	UTR3	UTR3:EXON_MRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000482757.1:ENST00000439370.5:ENST00000393531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	252	2	3.66113	3.90163	4.14213	1.60291e-9	1.21662e-9	1.73026e-7	1.25061e-7
chr19	8321975	8322075	17219828	0	+	0.62	(0.59,1]	chr19	1417491	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	530	2	2.95863	3.9014999999999995	4.84437	1.87911e-6	6.37367e-10	6.82334e-5	7.70867e-8
chr5	108593608	108593697	6137533	0	+	0.483146	(0.455,0.49]	chr5	479731	1	EXON_PSEUDO	EXON_PSEUDO	RP11-120B7.1	ENSG00000244245.1	ENST00000466800.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	3.43961	3.90134	4.36307	0.00218641	8.42878e-5	0.0208941	0.0015859
chr11	3702548	3702634	12237997	0	-	0.511628	(0.49,0.53]	chr11	945555	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.38683	3.901215	5.4156	0.012654	1.84143e-5	0.0718207	4.53637e-4
chr11	62881977	62882066	11974416	0	+	0.449438	(0.42,0.455]	chr11	918041	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000539458.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	292	2	3.44127	3.90107	4.36087	3.35198e-7	1e-12	1.7658e-5	2.25522e-10
chr2	43888203	43888302	2622912	0	-	0.282828	[0,0.29]	chr2	236084	21	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	72	2	3.68674	3.900665	4.11459	4.27614e-7	1.49629e-7	1.93648e-5	8.9016e-6
chr11	125612888	125612988	12194460	0	+	0.3	(0.29,0.33]	chr11	940777	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.67277	3.9003	5.12783	0.0255386	5.31593e-5	0.117089	0.00108035
chr21	44068954	44069054	18138265	0	+	0.3	(0.29,0.33]	chr21	1538609	48	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.67277	3.9003	5.12783	0.0255386	5.31593e-5	0.117089	0.00108035
chr11	64243198	64243254	11979723	0	+	0.589286	(0.53,0.59]	chr11	918925	1	CDS	CDS:UTR3:EXON_MRNA	FKBP2:RP11-783K16.16	ENSG00000173486.14:ENSG00000286264.2	ENST00000536642.5:ENST00000541388.1:ENST00000309366.9:ENST00000652762.2:ENST00000449942.6:ENST00000650773.1:ENST00000652094.1:ENST00000535135.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	3.75615	3.9001449999999998	4.04414	2.16536e-4	1.4954e-7	0.00361336	7.9385e-6
chr3	184242812	184242884	4622922	0	-	0.611111	(0.59,1]	chr3	381719	1	CDS	CDS:UTR3:EXON_MRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000485912.1:ENST00000455059.5:ENST00000446569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	167	2	3.36843	3.899965	4.4315	5.25099e-5	3.84288e-7	0.00117229	1.76177e-5
chr1	109340801	109340879	1219751	0	-	0.448718	(0.42,0.455]	chr1	118990	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.19078	3.89987	4.60896	0.00310864	8.72604e-7	0.0274272	3.55816e-5
chr20	34303270	34303355	17946903	0	-	0.705882	(0.59,1]	chr20	1520009	1	UTR5	UTR5:EXON_MRNA:INTRON	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000606061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.66274	3.8997650000000004	5.13679	0.00482151	9.28022e-4	0.0365653	0.0111748
chr16	74483022	74483073	16031321	0	-	0.490196	(0.49,0.53]	chr16	1287339	1	CDS	CDS:EXON_MRNA:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	3.51981	3.89971	4.27961	6.88328e-4	9.03426e-6	0.00876781	2.53429e-4
chr19	12643459	12643552	17469625	0	-	0.569892	(0.53,0.59]	chr19	1462695	3	EXON_PSEUDO	EXON_PSEUDO	RPL10P16	ENSG00000178464.6	ENST00000325000.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	140	2	3.25748	3.89968	4.54188	1.27479e-5	1.94673e-9	3.68998e-4	1.89292e-7
chr1	192246902	192246999	1421007	0	-	0.43299	(0.42,0.455]	chr1	143301	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-139E24.1:RP11-142L4.3	ENSG00000285280.2:ENSG00000226723.2	ENST00000643151.1:ENST00000431492.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	24	2	2.7523	3.89955	5.0468	0.0153283	1.33918e-4	0.0828908	0.00229039
chr21	39171212	39171295	18255516	0	-	0.421687	(0.42,0.455]	chr21	1547864	2	EXON_PSEUDO	EXON_PSEUDO	PCBP2P1	ENSG00000235701.1	ENST00000437262.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	2.7523	3.89955	5.0468	0.0153283	1.33918e-4	0.0828908	0.00229039
chr4	102797414	102797460	5563927	0	-	0.434783	(0.42,0.455]	chr4	444350	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.7523	3.89955	5.0468	0.0153283	1.33918e-4	0.0828908	0.00229039
chr5	132756193	132756289	6836939	0	-	0.375	(0.36,0.39]	chr5	523097	3	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	3.06725	3.899355	4.73146	2.06648e-4	3.06966e-7	0.00350209	1.45846e-5
chr17	47656935	47657012	16251697	0	+	0.532468	(0.53,0.59]	chr17	1316651	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5:ENST00000540627.5:ENST00000582097.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	3.2401	3.89935	4.5586	0.00161229	5.1985e-5	0.0169168	0.00106081
chr16	1325179	1325276	15486439	0	+	0.57732000000000006	(0.53,0.59]	chr16	1225668	5	UTR3	UTR3:EXON_MRNA	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000567383.6:ENST00000403747.6:ENST00000406620.6:ENST00000562470.3:ENST00000567074.6:ENST00000677314.1:ENST00000679137.1:ENST00000677987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	81	2	2.75178	3.89923	5.04668	8.47358e-4	3.63266e-8	0.0104407	2.34568e-6
chr2	219215996	219216088	3191227	0	-	0.695652	(0.59,1]	chr2	280829	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000492953.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	3.0542	3.89899	4.74378	0.00663549	0.00312942	0.0456243	0.0264364
chr1	32773184	32773283	130806	0	+	0.464646	(0.455,0.49]	chr1	16163	4	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.15812	3.89895	4.63978	6.94032e-4	8.56318e-5	0.00876781	0.00160672
chr14	20475061	20475156	14171361	0	+	0.547368	(0.53,0.59]	chr14	1109147	1	CDS	CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000557229.5:ENST00000554056.5:ENST00000553591.1:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.92962	3.8989249999999998	4.86823	0.0012954	4.35895e-4	0.0136936	0.00623608
chr2	135856727	135856805	2898076	0	-	0.371795	(0.36,0.39]	chr2	258518	1	CDS	CDS:EXON_MRNA:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	3.89837	3.8987749999999997	3.89918	1.0624e-4	9.25116e-5	0.00205241	0.00169222
chr21	22368096	22368196	18073307	0	+	0.39	(0.36,0.39]	chr21	1532674	1549	INTRON	INTRON	AP000705.7	ENSG00000226043.2	ENST00000667099.1:ENST00000654607.1:ENST00000444130.1	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	2.93136	3.898695	4.86603	0.00811967	1.68962e-4	0.0528637	0.00297945
chr6	31687039	31687125	7661706	0	-	0.511628	(0.49,0.53]	chr6	584957	2	UTR3	UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000475742.5:ENST00000468205.5:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.25514	3.898605	4.54207	0.00227467	1.36824e-6	0.0209546	5.72609e-5
chr1	32091674	32091739	126252	0	+	0.523077	(0.49,0.53]	chr1	15524	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000438825.5:ENST00000336294.10:ENST00000441402.5:ENST00000472503.5:ENST00000468135.5:ENST00000466321.5:ENST00000476968.5:ENST00000498613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	2.38097	3.8982850000000004	5.4156	0.0425419	1.84143e-5	0.167547	4.53637e-4
chr19	40232291	40232389	17565151	0	-	0.520408	(0.49,0.53]	chr19	1476051	21	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.38097	3.8982850000000004	5.4156	0.0425419	1.84143e-5	0.167547	4.53637e-4
chr3	33016774	33016840	4111138	0	-	0.515152	(0.49,0.53]	chr3	343439	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000461475.5:ENST00000497796.5:ENST00000467571.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.38097	3.8982850000000004	5.4156	0.0425419	1.84143e-5	0.167547	4.53637e-4
chr11	67682866	67682962	12428894	0	-	0.46875	(0.455,0.49]	chr11	965763	2	EXON_PSEUDO	EXON_PSEUDO	RPL37P2	ENSG00000239559.2	ENST00000472498.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	37	2	3.59437	3.89813	4.20189	0.00397662	3.2026e-5	0.0322851	7.10499e-4
chr6	149802199	149802279	7482041	0	+	0.4625	(0.455,0.49]	chr6	571804	1	CDS	CDS:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding	7	112	2	3.38878	3.8981250000000003	4.40747	4.61306e-6	4.62415e-9	1.60084e-4	3.9785e-7
chr4	87891940	87892039	4942235	0	+	0.454545	(0.42,0.455]	chr4	406011	2	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	53	2	3.31073	3.8979749999999997	4.48522	1.94134e-4	2.15617e-6	0.00332542	7.62296e-5
chr11	62881370	62881453	11974405	0	+	0.722892	(0.59,1]	chr11	918032	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000539458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	227	2	3.54057	3.8978650000000004	4.25516	5.0511e-6	2.09622e-7	1.5624e-4	1.18657e-5
chr1	161519235	161519334	500542	0	+	0.474747	(0.455,0.49]	chr1	54251	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000271450.12:ENST00000467525.5:ENST00000537821.2:ENST00000459885.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	10	149	2	3.80335	3.89764	3.99193	2.71603e-8	1.36795e-8	2.00055e-6	1.01738e-6
chr17	28724072	28724167	16177307	0	+	0.442105	(0.42,0.455]	chr17	1305508	3	UTR3	UTR3:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	3.34253	3.89751	4.45249	6.51228e-6	2.45559e-6	1.93775e-4	9.39733e-5
chr19	15834729	15834804	17246583	0	+	0.586667	(0.53,0.59]	chr19	1422764	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS3_PROX:INTRON	UCA1:ENSG10010139651.1	ENSG00000214049.8:ENSG00000273782.1	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644502.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3:ENST00000620952.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	5	99	2	3.80527	3.8974450000000003	3.98962	2.29235e-6	9.95548e-7	8.86852e-5	3.97538e-5
chr3	33865242	33865336	3399888	0	+	0.62766	(0.59,1]	chr3	295761	1	CDS	CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000489869.1:ENST00000473593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	142	2	3.22843	3.8974149999999996	4.5664	3.4492e-5	6.21388e-6	7.5812e-4	2.03021e-4
chr1	161428019	161428119	1333474	0	-	0.43	(0.42,0.455]	chr1	136928	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	234	3177	2	3.33077	3.8971999999999998	4.46363	4.96891e-11	1e-12	7.30845e-9	2.46312e-10
chr1	235167373	235167469	1560654	0	-	0.302083	(0.29,0.33]	chr1	156114	6	UTR3	UTR3:EXON_MRNA:INTRON	ARID4B	ENSG00000054267.22	ENST00000474953.5:ENST00000349213.7:ENST00000366603.6:ENST00000264183.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.55049	3.89718	4.24387	0.00263476	6.15323e-4	0.0239118	0.00765848
chr6	26158145	26158169	7101291	0	+	0.375	(0.36,0.39]	chr6	542807	1	UTR5	UTR5:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2:ENST00000377777.5	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	3.70878	3.897065	4.08535	1.80605e-6	1.13346e-6	6.57586e-5	4.90979e-5
chr1	110344544	110344643	404037	0	+	0.313131	(0.29,0.33]	chr1	39594	19	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.31653	3.89658	4.47663	0.00261621	2.0536e-6	0.0238929	7.32283e-5
chr12	52952246	52952346	12884271	0	+	0.59	(0.53,0.59]	chr12	1001705	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5:ENST00000546656.1:ENST00000548496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	3.47419	3.896565	4.31894	8.75273e-4	7.82085e-6	0.0106963	2.24148e-4
chr2	27205426	27205504	2569418	0	-	0.551282	(0.53,0.59]	chr2	231216	2	CDS	CDS:UTR3:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000464538.1:ENST00000445802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	3.47419	3.896565	4.31894	8.75273e-4	7.82085e-6	0.0106963	2.24148e-4
chr17	63745827	63745923	16634657	0	-	0.40625	(0.39,0.42]	chr17	1367560	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-51F16.8:CCDC47	ENSG00000125695.12:ENSG00000108588.14	ENST00000580553.1:ENST00000225726.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	71	2	3.3111	3.8964499999999997	4.4818	2.11919e-4	3.7253e-8	0.00357806	2.39972e-6
chr6	10724960	10725037	7048560	0	+	0.493506	(0.49,0.53]	chr6	539748	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5:ENST00000495549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	86	2	3.83059	3.89643	3.96227	2.55585e-6	6.9668e-7	8.83735e-5	3.27374e-5
chrX	65741445	65741542	18716380	0	+	0.247423	[0,0.29]	chrX	1596885	17	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	12	115	2	3.62327	3.89604	4.16881	2.47994e-8	2.05184e-9	1.69915e-6	2.13842e-7
chr7	103557964	103558049	8963849	0	-	0.305882	(0.29,0.33]	chr7	686198	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	3.33658	3.8959599999999996	4.45534	0.00110984	1.69227e-4	0.0127344	0.00275464
chrX	49305463	49305524	18694352	0	+	0.590164	(0.59,1]	chrX	1594802	2	CDS	CDS:EXON_MRNA	GAGE10	ENSG00000215274.5	ENST00000407599.3	protein_coding	protein_coding	protein_coding	protein_coding	3	104	2	3.3659	3.895915	4.42593	2.1483e-4	1.38583e-5	0.00332687	3.94563e-4
chr11	14514440	14514491	12282158	0	-	0.372549	(0.36,0.39]	chr11	949720	2	CDS	CDS:EXON_MRNA:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000529524.1:ENST00000531156.5:ENST00000526443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	68	2	3.06064	3.8957249999999997	4.73081	1.7786e-5	2.98719e-7	4.43546e-4	1.60273e-5
chr1	12123283	12123377	46660	0	+	0.659574	(0.59,1]	chr1	6036	1	CDS	CDS:UTR3:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.59461	3.8955450000000003	5.19648	0.0259455	7.35336e-4	0.117079	0.00921643
chr5	71658220	71658317	6026826	0	+	0.443299	(0.42,0.455]	chr5	472497	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	3.23707	3.895515	4.55396	2.71467e-4	1.1523e-6	0.00404536	4.9483e-5
chr13	25097894	25097994	13647302	0	+	0.45	(0.42,0.455]	chr13	1075795	17	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	6	117	2	3.03147	3.8954750000000002	4.75948	2.02875e-4	1.5781e-10	0.0034429	2.02193e-8
chr1	32302620	32302676	128213	0	+	0.464286	(0.455,0.49]	chr1	15905	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.24913	3.895435	4.54174	0.00239443	0.00130137	0.0225356	0.0136936
chr9	133361928	133362024	10880430	0	-	0.46875	(0.455,0.49]	chr9	825839	6	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.24913	3.895435	4.54174	0.00239443	0.00130137	0.0225356	0.0136936
chr1	182858732	182858813	594880	0	+	0.481481	(0.455,0.49]	chr1	61586	1	CDS	CDS:EXON_MRNA	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.71913	3.895425	5.07172	0.00103266	8.3067e-5	0.011478	0.00171126
chr1	58631135	58631234	1055017	0	-	0.494949	(0.49,0.53]	chr1	108133	4	EXON_PSEUDO	EXON_PSEUDO	RP4-592A1.2	ENSG00000185839.3	ENST00000427762.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	43	2	3.88887	3.8954050000000002	3.90194	9.98984e-5	9.11374e-5	0.00182992	0.00180257
chr1	225783967	225784067	737866	0	+	0.33	(0.29,0.33]	chr1	74373	2	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.33544	3.89539	4.45534	0.0016889	0.00110984	0.0165476	0.0127344
chr6	159778829	159778923	7526942	0	+	0.308511	(0.29,0.33]	chr6	574551	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000472052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.33544	3.89539	4.45534	0.0016889	0.00110984	0.0165476	0.0127344
chr2	54668866	54668965	1819445	0	+	0.464646	(0.455,0.49]	chr2	173665	4	UTR3	UTR3:EXON_MRNA	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000467371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.12843	3.8952649999999998	4.6621	0.00392855	7.84472e-4	0.0322851	0.00927662
chr20	63890981	63891075	17866835	0	+	0.585106	(0.53,0.59]	chr20	1511295	11	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.2308500000000002	3.894725	4.5586	0.00161229	2.81517e-4	0.0169168	0.00415519
chr9	120816442	120816539	10833853	0	-	0.391753	(0.39,0.42]	chr9	820467	5	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.62271	3.8946699999999996	4.16663	2.66379e-5	1.84729e-5	6.1526e-4	5.02409e-4
chr15	58610296	58610369	15310808	0	-	0.383562	(0.36,0.39]	chr15	1208287	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	84	2	3.37824	3.894575	4.41091	1.61189e-4	3.9833e-9	0.00287786	3.49875e-7
chr16	23582283	23582375	15895350	0	-	0.304348	(0.29,0.33]	chr16	1272285	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5:ENST00000567761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	3.14932	3.8945049999999997	4.63969	1.84463e-4	7.66796e-9	0.00321185	6.18404e-7
chr1	45615106	45615201	175152	0	+	0.463158	(0.455,0.49]	chr1	22755	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000527932.1:ENST00000534450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	3.85088	3.89441	3.93794	7.43966e-5	5.77607e-7	0.00142165	2.77476e-5
chr14	22767247	22767328	14174735	0	+	0.666667	(0.59,1]	chr14	1110309	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000483939.6:ENST00000612549.6:ENST00000473744.5:ENST00000557299.5:ENST00000442110.6:ENST00000431881.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000556473.1:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.84748	3.89439	4.9413	0.0124539	0.00191468	0.0712518	0.0190905
chr5	69365537	69365637	6625903	0	-	0.36	(0.33,0.36]	chr5	511949	6	CDS	CDS:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8:ENST00000503245.5:ENST00000509462.5:ENST00000504109.5:ENST00000512152.5:ENST00000508954.3	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.70185	3.8941999999999997	5.08655	0.00121183	4.6453e-5	0.0129756	0.00106753
chr1	91680641	91680741	1163967	0	-	0.38	(0.36,0.39]	chr1	114884	4	UTR3	UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	3.48333	3.8941800000000004	4.30503	9.78237e-6	7.76959e-6	2.71468e-4	2.43892e-4
chr18	9536134	9536233	16753982	0	+	0.333333	(0.33,0.36]	chr18	1381612	3	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.65992	3.8941600000000003	4.1284	0.00407303	3.45596e-4	0.0324137	0.00486237
chr12	110493041	110493141	13537809	0	-	0.41	(0.39,0.42]	chr12	1064964	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000552130.6:ENST00000447578.6:ENST00000546588.1:ENST00000548539.1:ENST00000549970.5:ENST00000548259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	3.76141	3.89414	4.02687	2.14058e-4	4.35816e-5	0.00359478	0.00091744700000000005
chrX	55017575	55017665	19084642	0	-	0.511111	(0.49,0.53]	chrX	1623753	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	100	2	3.35841	3.89408	4.42975	1.37225e-4	4.05335e-9	0.00253405	3.5451e-7
chr20	44907136	44907235	17799158	0	+	0.343434	(0.33,0.36]	chr20	1504696	8	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.65992	3.893975	4.12803	3.45596e-4	2.90032e-5	0.00486237	7.24986e-4
chr3	152296609	152296709	3816822	0	+	0.41	(0.39,0.42]	chr3	325621	265	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.784	3.893955	5.00391	0.00261393	9.12714e-5	0.0230705	0.00182992
chr19	14398061	14398139	17242411	0	+	0.564103	(0.53,0.59]	chr19	1421820	1	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6:ENST00000586849.5:ENST00000592341.1:ENST00000587319.5:ENST00000590567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.47991	3.893835	4.30776	0.00407289	6.7738e-5	0.0324137	0.0013157
chr15	47730638	47730737	15259485	0	-	0.555556	(0.53,0.59]	chr15	1203448	6	EXON_PSEUDO	EXON_PSEUDO	CTD-2270N23.1	ENSG00000213862.4	ENST00000497325.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	27	2	3.1234	3.89344	4.66348	0.00390623	0.00107799	0.0322851	0.0118238
chr2	131627090	131627186	2068936	0	+	0.583333	(0.53,0.59]	chr2	194536	13	EXON_PSEUDO	EXON_PSEUDO	POTEKP	ENSG00000204434.6	ENST00000397487.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	27	2	3.1234	3.89344	4.66348	0.00390623	0.00107799	0.0322851	0.0118238
chr6	31689642	31689704	7661744	0	-	0.564516	(0.53,0.59]	chr6	584984	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000475742.5:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000471644.5:ENST00000477016.5:ENST00000498420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	3.1234	3.89344	4.66348	0.00390623	0.00107799	0.0322851	0.0118238
chr19	44990489	44990585	17350307	0	+	0.5625	(0.53,0.59]	chr19	1439383	2	CDS	CDS:EXON_MRNA	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000588274.1:ENST00000589347.1:ENST00000586975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.02054	3.893435	4.76633	0.00577011	6.98999e-4	0.0426551	0.00846751
chr6	30652815	30652915	7112036	0	+	0.59	(0.53,0.59]	chr6	545033	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	C6orf136	ENSG00000204564.12	ENST00000293604.10:ENST00000488383.5:ENST00000376473.9:ENST00000651131.1:ENST00000376471.8:ENST00000446773.6:ENST00000465699.5:ENST00000467801.2:ENST00000468785.1:ENST00000460172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.02054	3.893435	4.76633	0.00577011	6.98999e-4	0.0426551	0.00846751
chr5	111129523	111129621	6144738	0	+	0.265306	[0,0.29]	chr5	480259	28	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.53112	3.8931750000000003	4.25523	5.30932e-5	1.88307e-5	0.00108035	5.10675e-4
chr5	137752948	137753048	6858089	0	-	0.55	(0.53,0.59]	chr5	524499	74	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	7	133	2	3.84459	3.89317	3.94175	3.37749e-7	1.41513e-7	1.77431e-5	7.53989e-6
chr1	21861756	21861843	891061	0	-	0.666667	(0.59,1]	chr1	92438	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	5	171	2	3.68764	3.89313	4.09862	4.42534e-5	4.65668e-7	0.00102453	2.07886e-5
chr5	82278323	82278396	6673020	0	-	0.671233	(0.59,1]	chr5	515077	1	UTR5	UTR5:EXON_MRNA	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000511844.1	protein_coding	protein_coding	protein_coding	protein_coding	120	3621	2	3.75915	3.893115	4.02708	1.14975e-9	4.21172e-11	1.29253e-7	6.31002e-9
chr2	187465678	187465775	3070156	0	-	0.340206	(0.33,0.36]	chr2	271827	16	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.6995	3.8930249999999997	5.08655	0.017838	4.6453e-5	0.0934844	0.00106753
chr17	15230541	15230637	16454714	0	-	0.291667	(0.29,0.33]	chr17	1343067	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PMP22	ENSG00000109099.16	ENST00000674673.1:ENST00000312280.9:ENST00000494511.7:ENST00000580584.3:ENST00000612492.5:ENST00000395938.7:ENST00000675854.1:ENST00000643451.2:ENST00000675819.1:ENST00000676329.1:ENST00000675551.1:ENST00000676002.1:ENST00000676221.1:ENST00000675950.1:ENST00000675808.1:ENST00000674871.1:ENST00000674651.1:ENST00000644020.1:ENST00000676161.1:ENST00000674707.1:ENST00000646419.2:ENST00000395936.7:ENST00000674947.1:ENST00000675197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.83531	3.8926800000000004	4.95005	0.00228447	9.78718e-5	0.0209856	0.0019344
chr13	97368650	97368750	13857777	0	+	0.38	(0.36,0.39]	chr13	1086516	17	INTRON	INTRON	MBNL2	ENSG00000139793.19	ENST00000397601.5:ENST00000343600.8:ENST00000376673.7:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.18642	3.89256	4.5987	0.00359152	9.0208e-4	0.0302391	0.0102618
chr7	55999996	56000088	8290411	0	+	0.380435	(0.36,0.39]	chr7	631447	11	UTR3	UTR3:EXON_MRNA	NIPSNAP2	ENSG00000146729.10	ENST00000446778.5:ENST00000322090.8:ENST00000497279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.18642	3.89256	4.5987	0.00359152	9.0208e-4	0.0302391	0.0102618
chr5	181241491	181241573	7008997	0	-	0.47561	(0.455,0.49]	chr5	537333	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	355	2	3.3983	3.892535	4.38677	7.9917699999999992e-09	1e-12	7.02257e-7	2.25522e-10
chr12	57694771	57694848	12904066	0	+	0.519481	(0.49,0.53]	chr12	1005853	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000549897.1:ENST00000315970.12:ENST00000550848.5:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000551285.5:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000550793.1:ENST00000552423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	64	2	2.78773	3.892265	4.9968	0.00257389	4.17016e-8	0.0235767	2.62949e-6
chr1	231370629	231370698	1548311	0	-	0.405797	(0.39,0.42]	chr1	155146	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1:ENST00000476717.2:ENST00000663780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.70591	3.892215	5.07852	0.0185716	1.02164e-4	0.0932453	0.00183311
chr11	111821907	111822006	12602885	0	-	0.50505	(0.49,0.53]	chr11	977082	40	INTRON	INTRON	ALG9:RP11-108O10.8:ALG9-IT1	ENSG00000086848.15:ENSG00000258529.5:ENSG00000254450.1	ENST00000616540.5:ENST00000532425.6:ENST00000614444.4:ENST00000526272.5:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000531305.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	17	324	2	2.87887	3.89209	4.90531	5.40201e-6	1e-12	1.80852e-4	2.25522e-10
chr8	18057533	18057623	9732806	0	-	0.466667	(0.455,0.49]	chr8	736287	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	44	2	3.3605	3.891995	4.42349	0.00147278	3.27827e-6	0.0157578	1.08637e-4
chr7	142666558	142666654	8579746	0	+	0.375	(0.36,0.39]	chr7	655273	4	UTR5	UTR5:EXON_MRNA	MTRNR2L6	ENSG00000270672.1	ENST00000604952.1	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.22655	3.89185	5.55715	0.00169792	2.50226e-6	0.0166327	9.53193e-5
chr5	37330037	37330132	6540353	0	-	0.505263	(0.49,0.53]	chr5	506612	1	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.70307	3.89184	5.08061	0.00363585	1.00361e-4	0.0298137	0.00196575
chr2	8856282	8856382	2505708	0	-	0.4	(0.39,0.42]	chr2	226072	37	UTR3	UTR3:EXON_MRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8	protein_coding	protein_coding	protein_coding	protein_coding	7	99	2	3.74093	3.8916399999999998	4.04235	2.70505e-7	1.17769e-7	1.30749e-5	7.23278e-6
chr10	27111887	27111976	11423289	0	-	0.382022	(0.36,0.39]	chr10	870886	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.80225	3.89125	3.98025	0.00881716	1.85308e-4	0.0562439	0.00322093
chr2	26201234	26201320	2565746	0	-	0.395349	(0.39,0.42]	chr2	230569	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	115	2	3.68712	3.89115	4.09518	4.41139e-7	1.14877e-8	2.21548e-5	8.72413e-7
chr2	65313401	65313500	2708766	0	-	0.585859	(0.53,0.59]	chr2	241397	27	UTR3	UTR3:EXON_MRNA	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.0099	3.89106	4.77222	0.00600486	6.67251e-4	0.042887	0.00867533
chr1	86863539	86863605	1144516	0	-	0.439394	(0.42,0.455]	chr1	113725	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.86963	3.89088	4.91213	4.62477e-4	1.75074e-4	0.00613242	0.00306313
chr1	185316952	185317049	1410805	0	-	0.536082	(0.53,0.59]	chr1	142662	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.94437	3.8908400000000003	5.8373100000000004	0.0143432	2.06883e-6	0.0783202	7.35008e-5
chr6	7883143	7883243	7587987	0	-	0.52	(0.49,0.53]	chr6	578855	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2:ENST00000473453.2:ENST00000475802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	95	2	2.10817	3.8905700000000003	5.67297	0.00798134	8.8816e-11	0.0527008	1.22427e-8
chr15	42261231	42261249	15239355	0	-	0.333333	(0.33,0.36]	chr15	1200257	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5:ENST00000561578.5:ENST00000566474.5:ENST00000307216.10:ENST00000568432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.2582	3.8904300000000003	4.52266	0.00230915	8.34989e-4	0.0211205	0.0102956
chr17	82395981	82396074	16712763	0	-	0.333333	(0.33,0.36]	chr17	1378620	11	INTRON	INTRON	OGFOD3	ENSG00000181396.13	ENST00000313056.10:ENST00000329197.9:ENST00000583897.5:ENST00000580445.5:ENST00000579407.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.2582	3.8904300000000003	4.52266	0.00230915	8.34989e-4	0.0211205	0.0102956
chr22	19351446	19351546	18432570	0	-	0.25	[0,0.29]	chr22	1570716	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.61628	3.8904300000000003	5.16458	0.0101434	3.97867e-5	0.0626311	8.56316e-4
chr11	9445194	9445291	11792888	0	+	0.402062	(0.39,0.42]	chr11	902941	1	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.88836	3.89016	4.89196	0.0102432	2.62166e-4	0.062872	0.0039188
chr11	46780427	46780485	12383877	0	-	0.413793	(0.39,0.42]	chr11	956118	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.88836	3.89016	4.89196	0.0102432	2.62166e-4	0.062872	0.0039188
chr8	58582019	58582113	9351274	0	+	0.404255	(0.39,0.42]	chr8	715167	4	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.88836	3.89016	4.89196	0.0102432	2.62166e-4	0.062872	0.0039188
chr11	5226555	5226655	12240374	0	-	0.55	(0.53,0.59]	chr11	946001	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HBB	ENSG00000244734.4	ENST00000647020.1:ENST00000335295.4:ENST00000633227.1:ENST00000475226.1:ENST00000485743.1:ENST00000380315.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.55001	3.8901149999999998	4.23022	6.11776e-4	1.38676e-5	0.00818575	3.5918e-4
chr3	14134769	14134830	3319415	0	+	0.540984	(0.53,0.59]	chr3	292077	1	CDS	CDS:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	3.55001	3.8901149999999998	4.23022	6.11776e-4	1.38676e-5	0.00818575	3.5918e-4
chrX	41674188	41674287	19049236	0	-	0.484848	(0.455,0.49]	chrX	1619182	23	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643853.1:ENST00000643831.2:ENST00000647118.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	2.76399	3.8900750000000004	5.01616	8.75629e-4	3.28358e-8	0.0106963	2.15416e-6
chr12	57500320	57500387	12902863	0	+	0.462687	(0.455,0.49]	chr12	1005381	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000551892.1:ENST00000552371.1:ENST00000549827.1:ENST00000548944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.53286	3.8900499999999996	5.24724	0.0282409	3.09759e-5	0.124386	7.62166e-4
chr2	218249413	218249464	2388108	0	+	0.529412	(0.49,0.53]	chr2	214409	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARPC2	ENSG00000163466.16	ENST00000315717.10:ENST00000295685.14:ENST00000470146.5:ENST00000477992.1:ENST00000456575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.78962	3.88998	4.99034	0.0129044	1.6002e-4	0.0725185	0.00286408
chr1	43997939	43998025	969352	0	-	0.511628	(0.49,0.53]	chr1	102249	2	CDS	CDS:EXON_MRNA:INTRON	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.35133	3.889615	4.4279	0.00196987	0.00150139	0.0193972	0.0152367
chr6	36925512	36925610	7135765	0	+	0.306122	(0.29,0.33]	chr6	549805	22	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.00201	3.8895799999999996	5.77715	0.0134564	3.88822e-7	0.0744942	1.99593e-5
chr22	20951405	20951503	18300197	0	+	0.428571	(0.42,0.455]	chr22	1553647	17	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	126	2	3.78199	3.889245	3.9965	1.02596e-6	7.19464e-9	4.51911e-5	5.84419e-7
chr6	27892756	27892856	7649679	0	-	0.53	(0.49,0.53]	chr6	582846	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	H3C12:H2AC17	ENSG00000197153.5:ENSG00000278677.2	ENST00000479986.1:ENST00000359611.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	195	2	3.79422	3.8891400000000003	3.98406	1.71157e-7	4.36205e-10	1.00253e-5	5.03828e-8
chr1	1052497	1052593	2419	0	+	0.510417	(0.49,0.53]	chr1	579	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.12684	3.8890650000000004	5.65129	0.0134683	3.38975e-6	0.0744999	1.23071e-4
chr12	113388526	113388626	13101739	0	+	0.64	(0.59,1]	chr12	1022447	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.58138	3.88893	5.19648	0.00235862	7.35336e-4	0.0215532	0.00921643
chr13	36965650	36965726	13968756	0	-	0.460526	(0.455,0.49]	chr13	1095984	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG5	ENSG00000120697.10	ENST00000496689.2:ENST00000239891.4:ENST00000679673.1:ENST00000681893.1:ENST00000681016.1:ENST00000680488.1:ENST00000680949.1:ENST00000443765.6:ENST00000681043.1:ENST00000681208.1:ENST00000681763.1:ENST00000680795.1:ENST00000680671.1:ENST00000680012.1:ENST00000681151.1:ENST00000681553.1:ENST00000679760.1:ENST00000681214.1:ENST00000679572.1:ENST00000679837.1:ENST00000460230.1:ENST00000681581.1:ENST00000680127.1:ENST00000681110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.57525	3.8885699999999996	4.20189	0.00397662	5.24878e-4	0.0322851	0.00677371
chr5	177882651	177882738	6409303	0	+	0.471264	(0.455,0.49]	chr5	498442	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	RP11-423H2.1	ENSG00000170089.15	ENST00000515065.5:ENST00000506672.5:ENST00000512851.5:ENST00000507037.5:ENST00000502601.5:ENST00000511074.1:ENST00000504756.1:ENST00000358442.4:ENST00000514635.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	25	2	3.57525	3.8885699999999996	4.20189	0.00397662	5.24878e-4	0.0322851	0.00677371
chr14	102001214	102001284	14495332	0	+	0.442857	(0.42,0.455]	chr14	1133041	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	102	2	2.59462	3.888495	5.18237	0.0062772	5.39633e-11	0.0445415	7.8576e-9
chr13	27667025	27667122	13658560	0	+	0.443299	(0.42,0.455]	chr13	1076549	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	POLR1D	ENSG00000186184.19	ENST00000637180.1:ENST00000399697.7:ENST00000636817.1:ENST00000630983.1:ENST00000465887.2:ENST00000637071.1:ENST00000636952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.52659	3.8884350000000003	4.25028	0.00406761	6.87022e-4	0.032143	0.00876781
chr10	1131599	1131697	10899980	0	+	0.540816	(0.53,0.59]	chr10	829520	24	UTR3	UTR3:EXON_MRNA	WDR37	ENSG00000047056.16	ENST00000358220.5:ENST00000263150.9:ENST00000650072.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr10	95616545	95616614	11632973	0	-	0.550725	(0.53,0.59]	chr10	886012	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000485428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr11	64232782	64232865	11979615	0	+	0.542169	(0.53,0.59]	chr11	918859	2	CDS	CDS:EXON_MRNA:INTRON	DNAJC4	ENSG00000110011.13	ENST00000321685.7:ENST00000628077.2:ENST00000355040.8:ENST00000321460.5:ENST00000537109.1:ENST00000542376.5:ENST00000543791.5:ENST00000535246.1:ENST00000538961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr11	119337210	119337309	12163920	0	+	0.555556	(0.53,0.59]	chr11	938094	9	UTR3	UTR3:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr13	24434983	24435081	13932635	0	-	0.581633	(0.53,0.59]	chr13	1093108	7	CDS	CDS:EXON_MRNA	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr14	94101872	94101931	14468047	0	+	0.576271	(0.53,0.59]	chr14	1129892	2	CDS	CDS:EXON_MRNA:INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5:ENST00000554562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr15	45072363	45072438	14901168	0	+	0.56	(0.53,0.59]	chr15	1171869	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1:ENST00000558574.2:ENST00000560488.5:ENST00000559562.1:ENST00000674487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr16	14765235	14765313	15560585	0	+	0.564103	(0.53,0.59]	chr16	1231873	4	CDS	CDS:EXON_MRNA	NPIPA2	ENSG00000254852.8	ENST00000529166.5:ENST00000553201.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr16	85523198	85523298	15796551	0	+	0.56	(0.53,0.59]	chr16	1256988	325	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr17	82054731	82054810	16382396	0	+	0.556962	(0.53,0.59]	chr17	1332396	4	CDS	CDS:UTR3:EXON_MRNA	GPS1	ENSG00000169727.12	ENST00000585084.5:ENST00000580716.5:ENST00000578552.5:ENST00000320548.8:ENST00000624957.3:ENST00000623691.3:ENST00000583641.5:ENST00000580141.5:ENST00000306823.10:ENST00000580723.5:ENST00000584460.5:ENST00000392358.6:ENST00000623761.3:ENST00000392357.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr19	45357473	45357543	17587566	0	-	0.542857	(0.53,0.59]	chr19	1479954	1	CDS	CDS:UTR3:EXON_MRNA	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000684468.1:ENST00000684264.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391942.6:ENST00000588652.5:ENST00000391941.6:ENST00000587376.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr19	48444434	48444533	17365920	0	+	0.575758	(0.53,0.59]	chr19	1441819	6	UTR3	UTR3:EXON_MRNA	GRIN2D	ENSG00000105464.4	ENST00000263269.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr20	36784992	36785091	17958472	0	-	0.555556	(0.53,0.59]	chr20	1521662	73	UTR3	UTR3:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10:ENST00000465671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr22	40321133	40321233	18376099	0	+	0.55	(0.53,0.59]	chr22	1563725	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000335727.13:ENST00000446273.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr3	196323916	196323997	4664788	0	-	0.555556	(0.53,0.59]	chr3	385845	1	CDS	CDS:EXON_MRNA	TM4SF19-DYNLT2B:TM4SF19	ENSG00000273331.1:ENSG00000145107.16	ENST00000442633.1:ENST00000446879.5:ENST00000440822.2:ENST00000273695.4:ENST00000454715.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr5	150364112	150364182	6294556	0	+	0.557143	(0.53,0.59]	chr5	491220	1	CDS	CDS:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000650162.1:ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000513538.2:ENST00000646961.1:ENST00000439160.6:ENST00000394269.7:ENST00000427724.7:ENST00000513346.5:ENST00000504761.6:ENST00000643812.1:ENST00000515516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr5	180791335	180791434	7007868	0	-	0.545455	(0.53,0.59]	chr5	537111	67	UTR3	UTR3:EXON_MRNA	MGAT1	ENSG00000131446.17	ENST00000307826.5:ENST00000333055.8:ENST00000393340.7:ENST00000446023.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr6	65837946	65838039	7784006	0	-	0.537634	(0.53,0.59]	chr6	596208	12	EXON_PSEUDO	EXON_PSEUDO	ADH5P4	ENSG00000233859.2	ENST00000433151.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr6	159789977	159790060	7526947	0	+	0.578313	(0.53,0.59]	chr6	574552	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL18	ENSG00000112110.10	ENST00000476826.5:ENST00000479638.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr7	143860287	143860367	9116817	0	-	0.5875	(0.53,0.59]	chr7	696340	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.61294	3.888385	4.16383	0.0310038	0.00659193	0.130016	0.0454205
chr1	25863458	25863552	904978	0	-	0.585106	(0.53,0.59]	chr1	94121	7	CDS	CDS:EXON_MRNA	PAQR7	ENSG00000182749.6	ENST00000675840.1:ENST00000374296.4	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr1	155257577	155257657	1307297	0	-	0.5875	(0.53,0.59]	chr1	132106	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5:ENST00000465312.5:ENST00000462151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr1	194189948	194190047	640481	0	+	0.585859	(0.53,0.59]	chr1	64400	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-563D10.1:EEF1A1P14	ENSG00000227240.2:ENSG00000233057.1	ENST00000656143.1:ENST00000655677.1:ENST00000454538.1:ENST00000421195.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr10	128098020	128098118	11745000	0	-	0.581633	(0.53,0.59]	chr10	896070	15	UTR3	UTR3:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr12	92087864	92087964	13466551	0	-	0.54	(0.53,0.59]	chr12	1059066	8	INTRON	INTRON	LINC01619	ENSG00000257242.8	ENST00000551843.5:ENST00000549802.5:ENST00000552106.5:ENST00000551563.6:ENST00000546975.4:ENST00000553207.5:ENST00000552277.3	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr14	24190481	24190581	14534214	0	-	0.56	(0.53,0.59]	chr14	1139696	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TM9SF1:RP11-468E2.1	ENSG00000100926.15:ENSG00000254692.1	ENST00000261789.9:ENST00000528669.5:ENST00000530611.1:ENST00000529332.5:ENST00000524835.5:ENST00000532632.1:ENST00000396854.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr15	74411294	74411356	15374436	0	-	0.548387	(0.53,0.59]	chr15	1215150	1	CDS	CDS:EXON_MRNA:PRIMIRNA	SEMA7A:MIR6881	ENSG00000138623.10:ENSG00000277391.1	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6:ENST00000616450.1:ENST00000569617.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr16	67843598	67843697	15711983	0	+	0.555556	(0.53,0.59]	chr16	1250674	2	UTR3	UTR3:EXON_MRNA	THAP11	ENSG00000168286.3	ENST00000303596.3	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr17	50368091	50368191	16584978	0	-	0.54	(0.53,0.59]	chr17	1363078	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPL27	ENSG00000108826.16	ENST00000507088.5:ENST00000508200.5:ENST00000225969.9:ENST00000442592.3:ENST00000503633.5:ENST00000511860.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr17	58998983	58999081	16616193	0	-	0.540816	(0.53,0.59]	chr17	1365280	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRIM37	ENSG00000108395.14	ENST00000585287.5:ENST00000393066.7:ENST00000583945.5:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr17	59211130	59211228	16293017	0	+	0.561224	(0.53,0.59]	chr17	1321380	11	CDS	CDS:EXON_MRNA:INTRON	CTD-2510F5.6:SMG8	ENSG00000265303.1:ENSG00000167447.13	ENST00000577660.1:ENST00000543872.6:ENST00000578922.1:ENST00000580498.5:ENST00000300917.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr18	12310992	12311053	16762125	0	+	0.557377	(0.53,0.59]	chr18	1382517	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000587204.1:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr19	10292781	10292866	17224715	0	+	0.588235	(0.53,0.59]	chr19	1418544	3	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr19	14121535	14121595	17478651	0	-	0.55	(0.53,0.59]	chr19	1464252	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ASF1B	ENSG00000105011.9	ENST00000263382.8:ENST00000592798.5:ENST00000590835.5:ENST00000589468.1:ENST00000474890.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr2	191846442	191846537	3089902	0	-	0.578947	(0.53,0.59]	chr2	273166	1	CDS	CDS:EXON_MRNA	CAVIN2	ENSG00000168497.5	ENST00000304141.5	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr20	50958423	50958523	18006959	0	-	0.55	(0.53,0.59]	chr20	1526328	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000371584.9:ENST00000683466.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000684628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr22	38468233	38468324	18366895	0	+	0.582418	(0.53,0.59]	chr22	1562532	1	CDS_START	CDS_START:CDS:EXON_MRNA	KDELR3	ENSG00000100196.11	ENST00000409006.3:ENST00000216014.9	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr22	41147891	41147946	18378646	0	+	0.581818	(0.53,0.59]	chr22	1564131	2	CDS	CDS:EXON_MRNA	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr3	128119327	128119375	4440571	0	-	0.5625	(0.53,0.59]	chr3	368889	1	CDS_START	CDS_START:CDS:EXON_MRNA	RUVBL1	ENSG00000175792.12	ENST00000464873.5:ENST00000322623.10	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr5	917007	917103	5851387	0	+	0.552083	(0.53,0.59]	chr5	460059	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TRIP13	ENSG00000071539.14	ENST00000166345.8:ENST00000510412.5:ENST00000509210.1:ENST00000508430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr6	131781114	131781213	7962606	0	-	0.585859	(0.53,0.59]	chr6	608805	5	EXON_PSEUDO	EXON_PSEUDO	RP5-988G15.1	ENSG00000216917.2	ENST00000401879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr7	143598834	143598933	8582883	0	+	0.585859	(0.53,0.59]	chr7	655911	9	EXON_PSEUDO	EXON_PSEUDO	TCAF1P1	ENSG00000223459.6	ENST00000414990.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	15	2	3.61856	3.888305	4.15805	0.0303021	0.00680952	0.129773	0.0468196
chr19	40610594	40610657	17330324	0	+	0.730159	(0.59,1]	chr19	1435987	2	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8:ENST00000243562.13:ENST00000546155.5:ENST00000598256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.61074	3.8882499999999998	5.16576	0.025486	6.55716e-4	0.117089	0.0080931
chr1	40074060	40074121	954676	0	-	0.42623	(0.42,0.455]	chr1	100851	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	3.74859	3.8881550000000002	4.02772	4.30844e-5	1.15347e-5	0.00100091	3.09736e-4
chr1	1041955	1042024	2271	0	+	0.724638	(0.59,1]	chr1	485	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.11647	3.8880749999999997	4.65968	0.00535979	0.00413632	0.0406564	0.0324998
chr1	225838653	225838729	738231	0	+	0.644737	(0.59,1]	chr1	74419	1	CDS	CDS:EXON_MRNA	EPHX1	ENSG00000143819.13	ENST00000272167.10:ENST00000448202.5:ENST00000614058.4:ENST00000366837.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	3.11647	3.8880749999999997	4.65968	0.00535979	0.00413632	0.0406564	0.0324998
chr2	175927571	175927671	3028113	0	-	0.45	(0.42,0.455]	chr2	268146	38	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.37329	3.888025	4.40276	0.0017618	0.00136107	0.0180053	0.0141115
chr1	202962626	202962699	1453373	0	-	0.589041	(0.53,0.59]	chr1	146107	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYB5R1	ENSG00000159348.13	ENST00000367249.9:ENST00000497655.1:ENST00000482572.5:ENST00000483915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.65894	3.8880049999999997	5.11707	0.0193255	1.35965e-4	0.0943643	0.00231202
chrM	2914	3011	19377168	0	+	0.463918	(0.455,0.49]	chrM	1649798	25	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	1237	16742	2	3.6503	3.888	4.1257	1e-12	1e-12	2.46312e-10	2.25522e-10
chr13	29517717	29517790	13945256	0	-	0.534247	(0.53,0.59]	chr13	1094566	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000473577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	3.21941	3.887905	4.5564	0.00266171	1.54434e-6	0.0240332	5.75816e-5
chr8	128045350	128045430	9615261	0	+	0.3875	(0.36,0.39]	chr8	728684	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1	lncRNA	lncRNA	lncRNA	lncRNA	3	44	2	3.74283	3.887835	4.03284	4.15492e-5	1.50915e-5	8.8376e-4	4.23797e-4
chr16	28844281	28844334	15907771	0	-	0.54717	(0.53,0.59]	chr16	1273892	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	TUFM:MIR4721	ENSG00000178952.11:ENSG00000283845.1	ENST00000313511.8:ENST00000569217.1:ENST00000577590.1:ENST00000565012.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	29	2	3.61133	3.88758	4.16383	0.00659193	4.55298e-4	0.0454205	0.00608573
chr19	41294621	41294686	17334205	0	+	0.538462	(0.53,0.59]	chr19	1436765	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	3.61133	3.88758	4.16383	0.00659193	4.55298e-4	0.0454205	0.00608573
chr2	126690268	126690311	2056300	0	+	0.534884	(0.53,0.59]	chr2	192617	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GYPC	ENSG00000136732.16	ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.61133	3.88758	4.16383	0.00659193	4.55298e-4	0.0454205	0.00608573
chr21	43969117	43969198	18137498	0	+	0.555556	(0.53,0.59]	chr21	1538531	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000481319.1:ENST00000467358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	3.61133	3.88758	4.16383	0.00659193	4.55298e-4	0.0454205	0.00608573
chr6	110895394	110895493	7331136	0	+	0.292929	(0.29,0.33]	chr6	563690	15	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.24226	3.88739	5.53252	0.0306054	4.41551e-6	0.130226	1.39924e-4
chr1	19173243	19173306	876687	0	-	0.492063	(0.49,0.53]	chr1	90301	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.49143	3.8873749999999996	4.28332	0.00338762	6.13943e-5	0.0288632	0.00122382
chr2	170966930	170967030	2206517	0	+	0.38	(0.36,0.39]	chr2	201863	9	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.54224	3.88736	4.23248	4.51643e-5	1.28371e-5	9.43703e-4	3.70041e-4
chr5	75356342	75356395	6037120	0	+	0.377358	(0.36,0.39]	chr5	473646	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000508070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	3.54224	3.88736	4.23248	4.51643e-5	1.28371e-5	9.43703e-4	3.70041e-4
chr20	50945846	50945903	18006827	0	-	0.385965	(0.36,0.39]	chr20	1526311	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000494752.1:ENST00000371584.9:ENST00000683466.1:ENST00000682713.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1:ENST00000682754.1:ENST00000683010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.84089	3.88735	4.93381	0.0128123	1.90009e-4	0.0719798	0.00302753
chr16	69462534	69462632	15723945	0	+	0.530612	(0.53,0.59]	chr16	1252041	1	UTR3	UTR3:EXON_MRNA	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6:ENST00000561792.6:ENST00000568237.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.33569	3.8871599999999997	4.43863	0.00254763	1.57373e-4	0.0233955	0.00260854
chr3	195780377	195780476	4661070	0	-	0.555556	(0.53,0.59]	chr3	385270	17	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.33569	3.8871599999999997	4.43863	0.00254763	1.57373e-4	0.0233955	0.00260854
chr6	43546570	43546661	7708320	0	-	0.428571	(0.42,0.455]	chr6	591514	1	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.91373	3.887055	4.86038	0.00892357	3.34791e-4	0.0567495	0.00472923
chrX	19350023	19350110	18604845	0	+	0.425287	(0.42,0.455]	chrX	1589011	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000423505.5:ENST00000422285.7:ENST00000417819.5:ENST00000492364.1:ENST00000355808.9:ENST00000379805.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.91373	3.887055	4.86038	0.00892357	3.34791e-4	0.0567495	0.00472923
chr3	128620410	128620510	4441306	0	-	0.51	(0.49,0.53]	chr3	368984	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	2.73196	3.88704	5.04212	3.65807e-4	2.31429e-10	0.0054989	2.86622e-8
chr4	73091915	73092011	5466130	0	-	0.489583	(0.455,0.49]	chr4	437754	14	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	6	90	2	3.61899	3.88688	4.15477	7.30786e-7	5.75142e-7	3.41098e-5	2.49635e-5
chr21	31688385	31688464	18211363	0	-	0.417722	(0.39,0.42]	chr21	1545292	2	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.38186	3.88687	5.39188	0.00601449	1.75441e-5	0.0434483	4.38078e-4
chr3	14445783	14445851	3320422	0	+	0.544118	(0.53,0.59]	chr3	292220	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	2.37399	3.886495	5.399	0.0126178	3.02387e-5	0.0717599	6.78876e-4
chr15	59650720	59650773	15315576	0	-	0.433962	(0.42,0.455]	chr15	1208774	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GTF2A2:AC092755.4	ENSG00000140307.11:ENSG00000227161.1	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5:ENST00000396061.5:ENST00000484743.5:ENST00000559141.1:ENST00000559706.1:ENST00000441746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	43	2	3.4231	3.886485	4.34987	0.00112541	5.55486e-6	0.0128481	1.68903e-4
chr16	74462487	74462558	16031099	0	-	0.450704	(0.42,0.455]	chr16	1287280	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561481.1:ENST00000563646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	3.4231	3.886485	4.34987	0.00112541	5.55486e-6	0.0128481	1.68903e-4
chr5	72198593	72198692	6027781	0	+	0.454545	(0.42,0.455]	chr5	472560	49	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.4231	3.886485	4.34987	0.00112541	5.55486e-6	0.0128481	1.68903e-4
chr10	59792022	59792121	11517219	0	-	0.373737	(0.36,0.39]	chr10	877718	34	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.53094	3.88644	4.24194	0.0305588	0.00276729	0.130016	0.0247437
chr2	111166583	111166681	1995091	0	+	0.377551	(0.36,0.39]	chr2	189282	25	UTR3	UTR3:EXON_MRNA	BCL2L11	ENSG00000153094.24	ENST00000610735.4:ENST00000615946.4:ENST00000619294.4:ENST00000620862.4:ENST00000621302.4:ENST00000622509.4:ENST00000622612.4:ENST00000393256.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.53094	3.88644	4.24194	0.0305588	0.00276729	0.130016	0.0247437
chr3	160495705	160495805	4553042	0	-	0.37	(0.36,0.39]	chr3	376952	8	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.53094	3.88644	4.24194	0.0305588	0.00276729	0.130016	0.0247437
chr5	75355289	75355364	6037107	0	+	0.386667	(0.36,0.39]	chr5	473639	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000508070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.53094	3.88644	4.24194	0.0305588	0.00276729	0.130016	0.0247437
chr6	149738642	149738693	8019004	0	-	0.372549	(0.36,0.39]	chr6	612737	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.53094	3.88644	4.24194	0.0305588	0.00276729	0.130016	0.0247437
chr9	137099695	137099788	10514650	0	+	0.526882	(0.49,0.53]	chr9	796981	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000542372.2:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000682210.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000683113.1:ENST00000682964.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	3.21317	3.88623	4.55929	0.00116196	3.08783e-4	0.0130851	0.00445935
chr19	45862557	45862657	17591409	0	-	0.54	(0.53,0.59]	chr19	1480795	1	SS5_PROX	SS5_PROX:INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000599460.5:ENST00000598896.5:ENST00000598059.5:ENST00000594293.5:ENST00000593959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.21941	3.886075	4.55274	0.00266171	0.00167999	0.0240332	0.0164993
chrX	30854790	30854886	19012422	0	-	0.46875	(0.455,0.49]	chrX	1617576	8	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	2.97397	3.8860650000000003	4.79816	8.30118e-5	1.71652e-7	0.00156827	1.00318e-5
chr17	4943178	4943231	16094318	0	+	0.54717	(0.53,0.59]	chr17	1294885	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000570492.5:ENST00000575400.5:ENST00000572382.5:ENST00000576965.1:ENST00000575524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.90978	3.88605	4.86232	0.00857883	4.57805e-4	0.0552386	0.00608573
chr3	127617034	127617118	3723558	0	+	0.571429	(0.53,0.59]	chr3	318276	3	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000473785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.90978	3.88605	4.86232	0.00857883	4.57805e-4	0.0552386	0.00608573
chr9	137108387	137108449	10514748	0	+	0.564516	(0.53,0.59]	chr9	797009	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MAN1B1	ENSG00000177239.16	ENST00000682881.1:ENST00000683324.1:ENST00000684138.1:ENST00000683135.1:ENST00000371587.9:ENST00000684366.1:ENST00000684229.1:ENST00000683355.1:ENST00000682117.1:ENST00000683475.1:ENST00000682425.1:ENST00000684645.1:ENST00000683979.1:ENST00000371589.9:ENST00000535144.6:ENST00000684272.1:ENST00000475449.7:ENST00000684759.1:ENST00000545539.6:ENST00000684144.1:ENST00000683987.1:ENST00000682212.1:ENST00000544448.6:ENST00000684297.1:ENST00000474902.5:ENST00000682964.1:ENST00000535028.6:ENST00000536349.6:ENST00000684336.1:ENST00000540391.5:ENST00000480100.3:ENST00000682502.1:ENST00000536268.2:ENST00000683529.1:ENST00000550113.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.90978	3.88605	4.86232	0.00857883	4.57805e-4	0.0552386	0.00608573
chr5	53886366	53886463	6575918	0	-	0.340206	(0.33,0.36]	chr5	509078	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.51887	3.885975	5.25308	0.0358636	2.94355e-5	0.147298	6.67979e-4
chrY	23185347	23185447	19371162	0	-	0.34	(0.33,0.36]	chrY	1648752	36	INTRON	INTRON	DAZ1	ENSG00000188120.16	ENST00000405239.6:ENST00000540248.5:ENST00000426000.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.51887	3.885975	5.25308	0.0358636	2.94355e-5	0.147298	6.67979e-4
chr1	9735884	9735963	854675	0	-	0.594937	(0.59,1]	chr1	86268	1	CDS	CDS:UTR3:EXON_MRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	3.65509	3.885905	4.11672	0.0222273	5.95213e-4	0.105595	0.00746384
chr5	131392790	131392890	6221758	0	+	0.46	(0.455,0.49]	chr5	484085	18	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.89975	3.885805	4.87186	3.94125e-4	2.33781e-4	0.00541075	0.00385436
chr17	49711488	49711555	16583015	0	-	0.537313	(0.53,0.59]	chr17	1362591	3	CDS	CDS:UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.46349	3.885625	4.30776	0.00407289	9.2216e-4	0.0324137	0.0104432
chr3	50358305	50358399	4177894	0	-	0.531915	(0.53,0.59]	chr3	351837	2	CDS	CDS:EXON_MRNA	TMEM115	ENSG00000126062.4	ENST00000266025.4	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.46349	3.885625	4.30776	0.00407289	9.2216e-4	0.0324137	0.0104432
chr1	35099843	35099942	135738	0	+	0.444444	(0.42,0.455]	chr1	16751	19	INTRON	INTRON	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000417119.5:ENST00000359858.9:ENST00000488455.5:ENST00000373330.1:ENST00000373329.5:ENST00000475654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	3.16223	3.885595	4.60896	4.45084e-4	8.72604e-7	0.00633715	3.55816e-5
chr12	67297491	67297577	12933977	0	+	0.360465	(0.36,0.39]	chr12	1008070	2	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000535146.1:ENST00000540319.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.18348	3.8854749999999996	4.58747	0.00310315	6.55819e-4	0.0263402	0.00860229
chr22	30975856	30975955	18344845	0	+	0.383838	(0.36,0.39]	chr22	1559168	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.18348	3.8854749999999996	4.58747	0.00310315	6.55819e-4	0.0263402	0.00860229
chrX	66168957	66169052	18717290	0	+	0.378947	(0.36,0.39]	chrX	1596933	8	INTRON	INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.5:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.18348	3.8854749999999996	4.58747	0.00310315	6.55819e-4	0.0263402	0.00860229
chrX	134378004	134378055	18863047	0	+	0.372549	(0.36,0.39]	chrX	1607315	1	CDS	CDS:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.18348	3.8854749999999996	4.58747	0.00310315	6.55819e-4	0.0263402	0.00860229
chr6	26027040	26027096	7646921	0	-	0.589286	(0.53,0.59]	chr6	582483	1	CDS	CDS:EXON_MRNA	H4C2	ENSG00000278705.2	ENST00000377745.4	protein_coding	protein_coding	protein_coding	protein_coding	9	159	2	3.33018	3.88535	4.44052	1.08016e-6	4.78693e-9	4.27337e-5	4.44837e-7
chr10	97433168	97433260	11212397	0	+	0.445652	(0.42,0.455]	chr10	852981	8	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.34191	3.8853	5.42869	0.0159091	1.60756e-5	0.0854674	4.07445e-4
chr9	83669255	83669327	10710443	0	-	0.402778	(0.39,0.42]	chr9	810200	2	CDS	CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.18155	3.8852900000000004	5.58903	0.0283931	5.14263e-6	0.127654	1.58468e-4
chr12	110731769	110731826	13539342	0	-	0.385965	(0.36,0.39]	chr12	1065130	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	27	2	2.6711	3.88525	5.0994	0.00434596	4.68763e-5	0.0335517	0.00107286
chr1	207324654	207324750	686295	0	+	0.395833	(0.39,0.42]	chr1	69478	2	CDS	CDS:EXON_MRNA:INTRON	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	160	2	2.82444	3.88495	4.94546	1.06946e-4	1.88516e-12	0.00206452	3.97641e-10
chr1	23949015	23949107	898555	0	-	0.478261	(0.455,0.49]	chr1	93361	1	EXON_PSEUDO	EXON_PSEUDO	H3P1	ENSG00000230228.2	ENST00000421430.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	2.9967	3.8849400000000003	4.77318	0.00650423	4.7888e-4	0.0454205	0.00628636
chr16	31090841	31090938	15916931	0	-	0.484536	(0.455,0.49]	chr16	1275803	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000533518.5:ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.9967	3.8849400000000003	4.77318	0.00650423	4.7888e-4	0.0454205	0.00628636
chr5	168568723	168568802	6969112	0	-	0.455696	(0.455,0.49]	chr5	532825	2	CDS	CDS:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.9967	3.8849400000000003	4.77318	0.00650423	4.7888e-4	0.0454205	0.00628636
chr4	75647028	75647104	5472889	0	-	0.342105	(0.33,0.36]	chr4	438376	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000677520.1:ENST00000678932.1:ENST00000507133.2:ENST00000677426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.28792	3.8848900000000004	5.48186	0.0239159	7.22374e-6	0.112531	2.11873e-4
chr2	128134875	128134961	2059924	0	+	0.406977	(0.39,0.42]	chr2	193242	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.82973	3.8848450000000003	3.93996	0.00841622	1.3728e-4	0.054565	0.00232973
chr2	26279134	26279224	1686310	0	+	0.6	(0.59,1]	chr2	164848	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.76006	3.884755	5.00945	0.00330486	0.00149725	0.027613	0.0159607
chr9	98086689	98086787	10759992	0	-	0.459184	(0.455,0.49]	chr9	814726	25	UTR3	UTR3:EXON_MRNA:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1:ENST00000341469.7:ENST00000342043.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.65079	3.8846750000000005	4.1185600000000004	3.61776e-4	2.49433e-5	0.00544764	5.8178e-4
chr4	138179305	138179394	5665148	0	-	0.483146	(0.455,0.49]	chr4	450193	2	CDS	CDS:UTR3:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	3.00871	3.884595	4.76048	3.99985e-4	2.11527e-4	0.00588767	0.00328766
chr12	55726889	55726940	13347087	0	-	0.509804	(0.49,0.53]	chr12	1050344	1	CDS_START	CDS_START:CDS:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000548898.5:ENST00000420846.7:ENST00000552067.5:ENST00000552692.5:ENST00000546939.5:ENST00000548160.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5:ENST00000546457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	3.18455	3.8845350000000005	4.58452	2.02852e-5	9.98532e-7	4.93215e-4	4.42534e-5
chr9	133364932	133365026	10880467	0	-	0.617021	(0.59,1]	chr9	825853	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	132	2	2.6406	3.88433	5.12806	0.00193045	1.40673e-7	0.0192201	7.49861e-6
chr7	159018341	159018438	8639476	0	+	0.546392	(0.53,0.59]	chr7	660126	3	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.89916	3.883695	4.86823	0.00890406	4.35895e-4	0.0565003	0.00623608
chr1	52383419	52383494	1018794	0	-	0.56	(0.53,0.59]	chr1	105586	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.20874	3.8836700000000004	4.5586	0.00278422	0.00161229	0.0241009	0.0169168
chr11	65637070	65637162	11985696	0	+	0.543478	(0.53,0.59]	chr11	920750	2	UTR3	UTR3:EXON_MRNA	PCNX3	ENSG00000197136.5	ENST00000355703.4:ENST00000439247.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.20874	3.8836700000000004	4.5586	0.00278422	0.00161229	0.0241009	0.0169168
chr14	20455190	20455269	14171256	0	+	0.658228	(0.59,1]	chr14	1109098	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000556296.1:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555306.5:ENST00000557344.5:ENST00000557181.5:ENST00000554325.1:ENST00000555839.5:ENST00000557159.5:ENST00000553368.1:ENST00000557054.1:ENST00000556054.5:ENST00000557592.5:ENST00000557365.1:ENST00000557150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.32455	3.8834549999999997	5.44236	0.0520547	2.02004e-4	0.193787	0.00317801
chr11	840371	840471	12228230	0	-	0.62	(0.59,1]	chr11	943907	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	POLR2L	ENSG00000177700.6	ENST00000534030.1:ENST00000322028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.61023	3.8832899999999997	4.15635	7.25496e-4	5.93256e-5	0.00869086	0.00130151
chr2	121763004	121763084	2034628	0	+	0.425	(0.42,0.455]	chr2	192248	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TSN	ENSG00000211460.12	ENST00000455432.5:ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000478165.5:ENST00000490717.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.90616	3.88327	4.86038	0.00162359	3.34791e-4	0.0169915	0.00472923
chr4	1956050	1956119	4682211	0	+	0.449275	(0.42,0.455]	chr4	388208	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000482415.6:ENST00000514329.5:ENST00000382888.3:ENST00000505643.5:ENST00000503207.1:ENST00000507094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.90616	3.88327	4.86038	0.00162359	3.34791e-4	0.0169915	0.00472923
chr12	67305103	67305202	12934057	0	+	0.363636	(0.36,0.39]	chr12	1008094	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	3.20198	3.88293	4.56388	4.4092e-4	1.11774e-6	0.0062930699999999996	4.4003e-5
chr2	61872237	61872316	2691365	0	-	0.468354	(0.455,0.49]	chr2	240539	3	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	3.44026	3.882925	4.32559	8.71641e-5	9.90251e-9	0.00177086	7.695e-7
chr3	185418284	185418382	4625652	0	-	0.408163	(0.39,0.42]	chr3	382004	9	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	127	2	3.51121	3.882835	4.25446	2.50054e-7	3.92631e-8	1.37736e-5	2.50424e-6
chr9	37588412	37588505	10645860	0	-	0.27957	[0,0.29]	chr9	805786	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-613M10.8:TOMM5:RP11-613M10.9	ENSG00000256966.6:ENSG00000175768.13:ENSG00000255872.3	ENST00000541804.1:ENST00000544475.5:ENST00000537239.2:ENST00000540941.1:ENST00000540557.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.80134	3.8828250000000004	4.96431	0.0049344	1.20737e-4	0.0379087	0.00210079
chrX	53594559	53594621	19077839	0	-	0.435484	(0.42,0.455]	chrX	1622905	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	2.56263	3.8826549999999997	5.20268	9.19381e-4	3.59669e-5	0.0104432	8.71318e-4
chr22	41646895	41646988	18381540	0	+	0.419355	(0.39,0.42]	chr22	1564699	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.45983	3.882565	4.3053	8.68166e-5	7.30538e-6	0.00177086	2.13219e-4
chr17	7656487	7656585	16106183	0	+	0.520408	(0.49,0.53]	chr17	1297135	7	UTR3	UTR3:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.8233	3.882535	3.94177	0.0104929	1.44192e-4	0.063428	0.00242438
chr19	34400224	34400319	17300569	0	+	0.410526	(0.39,0.42]	chr19	1429897	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	269	2	3.27302	3.882345	4.49167	3.86041e-8	1.43885e-12	2.72871e-6	3.11214e-10
chr12	7933809	7933902	13193318	0	-	0.483871	(0.455,0.49]	chr12	1033527	1	CDS	CDS:EXON_MRNA:INTRON	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1:ENST00000544936.1:ENST00000476634.1:ENST00000541671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	3.87233	3.88234	3.89235	1.08465e-4	9.60445e-5	0.00193256	0.00190731
chr10	70422742	70422842	11100458	0	+	0.33	(0.29,0.33]	chr10	844350	11	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.94844	3.8823100000000004	4.81618	0.00217122	2.74489e-4	0.0208941	0.00406677
chr12	63822217	63822316	12916668	0	+	0.454545	(0.42,0.455]	chr12	1006815	3	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	39	2	3.70487	3.882205	4.05954	0.00617886	1.55091e-5	0.0439741	3.95473e-4
chr2	149579502	149579575	2932990	0	-	0.410959	(0.39,0.42]	chr2	260053	2	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	3.27036	3.8818	4.49324	0.00108192	1.09752e-5	0.0124943	2.97332e-4
chr6	17675604	17675687	7619496	0	-	0.46988	(0.455,0.49]	chr6	580618	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.12994	3.8816300000000004	5.63332	0.0304832	4.15159e-6	0.130204	1.32627e-4
chr12	62756141	62756233	12916261	0	+	0.467391	(0.455,0.49]	chr12	1006751	11	EXON_PSEUDO	EXON_PSEUDO	GAPDHP44	ENSG00000213352.3	ENST00000513513.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	3.40009	3.8815799999999996	4.36307	0.00218641	0.00120619	0.0208941	0.0129255
chr2	127941511	127941610	2869551	0	-	0.464646	(0.455,0.49]	chr2	256570	4	UTR3	UTR3:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.40009	3.8815799999999996	4.36307	0.00218641	0.00120619	0.0208941	0.0129255
chr5	104962288	104962388	6738786	0	-	0.48	(0.455,0.49]	chr5	518567	440	INTRON	INTRON	RP11-6N13.1:CTD-2374C24.1	ENSG00000251574.8:ENSG00000253584.1	ENST00000503650.1:ENST00000517758.1	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	3.40009	3.8815799999999996	4.36307	0.00218641	0.00120619	0.0208941	0.0129255
chr5	111113073	111113153	6144564	0	+	0.475	(0.455,0.49]	chr5	480219	1	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.40009	3.8815799999999996	4.36307	0.00218641	0.00120619	0.0208941	0.0129255
chr11	62627124	62627188	12409717	0	-	0.421875	(0.42,0.455]	chr11	961244	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr11	72021203	72021291	12447232	0	-	0.454545	(0.42,0.455]	chr11	967303	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000544129.5:ENST00000535947.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr14	96856129	96856174	14477746	0	+	0.422222	(0.42,0.455]	chr14	1131020	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr2	75658251	75658350	1894591	0	+	0.434343	(0.42,0.455]	chr2	179770	31	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr2	223963844	223963934	2408041	0	+	0.433333	(0.42,0.455]	chr2	216694	2	CDS	CDS:EXON_MRNA	MRPL44	ENSG00000135900.4	ENST00000258383.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr4	158240358	158240418	5192716	0	+	0.433333	(0.42,0.455]	chr4	419257	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM144	ENSG00000164124.11	ENST00000296529.11:ENST00000511532.5:ENST00000503404.5:ENST00000512272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr5	115512742	115512837	6160484	0	+	0.431579	(0.42,0.455]	chr5	481024	8	EXON_PSEUDO	EXON_PSEUDO	CCT5P1	ENSG00000250444.1	ENST00000502314.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr9	125153602	125153672	10855820	0	-	0.428571	(0.42,0.455]	chr9	822330	2	CDS	CDS:EXON_MRNA	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.70273	3.881135	4.05954	0.0215502	0.00617886	0.102904	0.0439741
chr1	207683871	207683957	689222	0	+	0.44186	(0.42,0.455]	chr1	69983	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CR1L	ENSG00000197721.17	ENST00000531844.5:ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	76	2	2.89978	3.880935	4.86209	5.81698e-5	1.22097e-7	0.00128763	6.6496e-6
chr11	60898100	60898185	12402773	0	-	0.470588	(0.455,0.49]	chr11	959895	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1:ENST00000539960.1:ENST00000539180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	3.24913	3.88072	4.51231	0.00239443	1.73754e-6	0.0225356	6.36428e-5
chr20	44907036	44907136	17799157	0	+	0.41	(0.39,0.42]	chr20	1504696	7	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.56097	3.88063	4.20029	6.12149e-4	1.46608e-5	0.00818575	3.77398e-4
chr1	23558023	23558121	896514	0	-	0.438776	(0.42,0.455]	chr1	93153	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ID3	ENSG00000117318.9	ENST00000374561.6:ENST00000463312.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr1	229304600	229304700	747036	0	+	0.45	(0.42,0.455]	chr1	75889	9	UTR3	UTR3:EXON_MRNA	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr10	3147986	3148063	11346834	0	-	0.454545	(0.42,0.455]	chr10	864967	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000678811.1:ENST00000464395.1:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000451454.5:ENST00000679210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr10	124836367	124836467	11303495	0	+	0.44	(0.42,0.455]	chr10	861855	15	UTR3	UTR3:EXON_MRNA	ABRAXAS2	ENSG00000165660.8	ENST00000298492.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr12	4099124	4099223	12704122	0	+	0.424242	(0.42,0.455]	chr12	985492	18	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr12	8636615	8636714	12722324	0	+	0.434343	(0.42,0.455]	chr12	988470	1	EXON_PSEUDO	EXON_PSEUDO	HADHAP2	ENSG00000255967.1	ENST00000540341.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr3	136329904	136329926	3763159	0	+	0.454545	(0.42,0.455]	chr3	321904	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr5	69117238	69117317	6019107	0	+	0.443038	(0.42,0.455]	chr5	471181	1	CDS	CDS:EXON_MRNA	SLC30A5	ENSG00000145740.19	ENST00000621204.4:ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr7	50401820	50401919	8279149	0	+	0.424242	(0.42,0.455]	chr7	630737	13	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr7	64108590	64108689	8294403	0	+	0.444444	(0.42,0.455]	chr7	632087	61	INTRON	INTRON	RP11-3N2.15:GUSBP6	ENSG00000285544.1:ENSG00000224458.3	ENST00000647787.1:ENST00000438529.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr7	107092185	107092285	8454528	0	+	0.44	(0.42,0.455]	chr7	645800	3	SS5_PROX	SS5_PROX:INTRON	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000393613.6:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr7	131080067	131080166	9069031	0	-	0.444444	(0.42,0.455]	chr7	692679	31	INTRON	INTRON	RP11-36B6.2:LINC-PINT	ENSG00000285106.2:ENSG00000231721.7	ENST00000642963.1:ENST00000647102.1:ENST00000643866.1:ENST00000644432.1:ENST00000643779.1:ENST00000643452.1:ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr7	133917582	133917660	8544060	0	+	0.423077	(0.42,0.455]	chr7	651975	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000460346.5:ENST00000472020.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chrX	56737325	56737409	19085244	0	-	0.428571	(0.42,0.455]	chrX	1623906	2	EXON_PSEUDO	EXON_PSEUDO	UQCRBP1	ENSG00000237748.1	ENST00000421129.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.8515	3.8803549999999998	3.90921	0.0121657	0.0119089	0.0701019	0.0686664
chr15	74938014	74938083	15376447	0	-	0.710145	(0.59,1]	chr15	1215574	1	UTR5	UTR5:EXON_MRNA	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.6961	3.8803349999999996	4.06457	9.48087e-5	3.68566e-5	0.00188744	8.01958e-4
chr1	226984875	226984941	740584	0	+	0.5	(0.49,0.53]	chr1	74753	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-1087E8.6:COQ8A	ENSG00000288674.1:ENSG00000163050.18	ENST00000366779.6:ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5:ENST00000479852.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	2.56183	3.88033	5.19883	0.0261296	6.30063e-5	0.118976	0.00124286
chr20	57514591	57514666	18021719	0	-	0.506667	(0.49,0.53]	chr20	1527416	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608858.5:ENST00000608108.1:ENST00000608720.5:ENST00000607923.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.56183	3.88033	5.19883	0.0261296	6.30063e-5	0.118976	0.00124286
chr3	186658166	186658266	4633230	0	-	0.51	(0.49,0.53]	chr3	382703	59	INTRON	INTRON	RP11-573D15.8	ENSG00000197099.8	ENST00000630178.2:ENST00000625386.2:ENST00000628505.2:ENST00000428501.5:ENST00000455926.3:ENST00000628253.2:ENST00000630315.2:ENST00000626649.2:ENST00000628190.2:ENST00000626633.2:ENST00000625303.2:ENST00000630864.2:ENST00000629106.2:ENST00000626845.2:ENST00000630331.2:ENST00000625741.2:ENST00000627469.2:ENST00000629451.2:ENST00000625826.1:ENST00000630726.2	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.56183	3.88033	5.19883	0.0261296	6.30063e-5	0.118976	0.00124286
chr7	5529221	5529294	8659495	0	-	0.561644	(0.53,0.59]	chr7	662123	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6:ENST00000645025.1:ENST00000480301.1:ENST00000443528.5:ENST00000417101.2:ENST00000414620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	414	2	3.77869	3.8802950000000003	3.9819	2.71859e-10	1.97176e-10	3.66349e-8	2.48343e-8
chr1	150560096	150560196	468531	0	+	0.64	(0.59,1]	chr1	47507	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	188	2	3.72087	3.8798700000000004	4.03887	5.87652e-6	1.55371e-6	1.93909e-4	5.79065e-5
chr6	166931043	166931118	8083242	0	-	0.466667	(0.455,0.49]	chr6	616948	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	3.0141	3.879715	4.74533	9.3076e-4	3.57868e-9	0.0111917	3.18911e-7
chr20	45902521	45902604	17987677	0	-	0.650602	(0.59,1]	chr20	1524195	2	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.44238	3.879505	4.31663	0.00158239	2.15624e-5	0.0167793	5.14797e-4
chr13	46771415	46771496	14012214	0	-	0.37037	(0.36,0.39]	chr13	1098838	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	3.00115	3.8794	4.75765	0.0012486	2.80042e-9	0.0137762	2.57422e-7
chr1	114537161	114537258	418866	0	+	0.628866	(0.59,1]	chr1	41231	13	EXON_PSEUDO	EXON_PSEUDO	PKMP1	ENSG00000236480.1	ENST00000455804.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	38	2	3.1277	3.87938	4.63106	0.00537945	0.00490589	0.0406564	0.0366648
chr1	21846447	21846523	890876	0	-	0.697368	(0.59,1]	chr1	92342	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	163	2	2.39609	3.879315	5.36254	0.00154869	2.75961e-8	0.0164839	1.86044e-6
chr11	7991780	7991835	11789456	0	+	0.490909	(0.49,0.53]	chr11	902502	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	3.6358	3.8792150000000003	4.12263	0.00591451	2.45857e-5	0.0427941	5.74553e-4
chr10	32911626	32911670	11443997	0	-	0.5	(0.49,0.53]	chr10	872638	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	2.21413	3.879015	5.5439	0.00995539	8.44877e-6	0.0621728	2.39255e-4
chr7	5527747	5527847	8659475	0	-	0.59	(0.53,0.59]	chr7	662110	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	538	2	3.54473	3.8789800000000003	4.21323	1.23649e-9	3.02325e-12	1.37231e-7	6.06531e-10
chr15	72346230	72346325	15369452	0	-	0.536842	(0.53,0.59]	chr15	1214423	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	3.62204	3.8788650000000002	4.13569	4.3021e-4	2.50241e-5	0.00620274	5.82427e-4
chr1	47280240	47280336	985988	0	-	0.447917	(0.42,0.455]	chr1	104121	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	41	2	2.3893	3.8787700000000003	5.36824	0.00221606	1.33083e-5	0.0205138	3.81624e-4
chr22	17655711	17655811	18290419	0	+	0.47	(0.455,0.49]	chr22	1552106	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.99697	3.878725	4.76048	9.57891e-4	3.99985e-4	0.0107247	0.00588767
chr1	15568275	15568374	69118	0	+	0.393939	(0.39,0.42]	chr1	7734	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1:ENST00000495523.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.4261	3.8787	4.3313	0.00209984	0.00107164	0.0204266	0.0118238
chr1	19888792	19888891	87748	0	+	0.393939	(0.39,0.42]	chr1	9848	57	INTRON	INTRON	OTUD3	ENSG00000169914.6	ENST00000375120.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.4261	3.8787	4.3313	0.00209984	0.00107164	0.0204266	0.0118238
chr2	47480695	47480783	1785296	0	+	0.409091	(0.39,0.42]	chr2	172529	1	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.4261	3.8787	4.3313	0.00209984	0.00107164	0.0204266	0.0118238
chr5	140538998	140539098	6255232	0	+	0.4	(0.39,0.42]	chr5	487658	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000421706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.4261	3.8787	4.3313	0.00209984	0.00107164	0.0204266	0.0118238
chr4	169704090	169704184	5218028	0	+	0.510638	(0.49,0.53]	chr4	420917	2	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.42954	3.878615	4.32769	0.00105489	6.54988e-6	0.0123035	1.94116e-4
chr16	88648044	88648114	16073986	0	-	0.614286	(0.59,1]	chr16	1291452	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000566229.1:ENST00000567174.5:ENST00000569359.5:ENST00000563526.5:ENST00000568278.1:ENST00000562209.1:ENST00000561972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.36593	3.878525	5.39112	0.0141097	2.53595e-4	0.077233	0.00381472
chr1	161469469	161469569	1333891	0	-	0.69	(0.59,1]	chr1	136938	286	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	63	2009	2	3.49707	3.8783	4.25953	1.28383e-8	3.22898e-11	9.61993e-7	5.48331e-9
chr1	156320931	156321025	1314149	0	-	0.446809	(0.42,0.455]	chr1	133439	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	134	2	3.86245	3.878235	3.89402	8.83107e-8	1.87611e-8	5.61099e-6	1.34017e-6
chr22	19434814	19434894	18295297	0	+	0.3625	(0.36,0.39]	chr22	1552697	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL40	ENSG00000185608.9	ENST00000333130.4:ENST00000443660.5:ENST00000471259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	3.33241	3.87822	4.42403	0.00193631	3.10878e-6	0.0192272	1.04078e-4
chr1	108560428	108560528	394176	0	+	0.5	(0.49,0.53]	chr1	38002	1	CDS_START	CDS_START:CDS:EXON_MRNA	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.72252	3.878165	5.03381	0.0161474	1.49689e-4	0.0860154	0.0024973
chr18	9536035	9536134	16753981	0	+	0.525253	(0.49,0.53]	chr18	1381612	2	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.72252	3.878165	5.03381	0.0161474	1.49689e-4	0.0860154	0.0024973
chr4	112788679	112788778	5601618	0	-	0.50505	(0.49,0.53]	chr4	446907	7	EXON_PSEUDO	EXON_PSEUDO	RPL7AP30	ENSG00000241741.1	ENST00000482859.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	2.72252	3.878165	5.03381	0.0161474	1.49689e-4	0.0860154	0.0024973
chr22	37877971	37878071	18364684	0	+	0.59	(0.53,0.59]	chr22	1562205	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	66	2	1.91272	3.8780200000000002	5.84332	0.00387128	1.90853e-6	0.0311181	7.59317e-5
chr11	32933338	32933438	11899060	0	+	0.4	(0.39,0.42]	chr11	909001	17	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.86368	3.87793	4.89218	0.0101619	1.6518e-4	0.0627153	0.0029267300000000002
chr14	102038697	102038772	14495770	0	+	0.466667	(0.455,0.49]	chr14	1133214	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000555800.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.52734	3.8776400000000004	5.22794	0.00792433	4.80556e-5	0.0523592	9.91058e-4
chr2	47799387	47799486	1788195	0	+	0.464646	(0.455,0.49]	chr2	172666	5	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.52734	3.8776400000000004	5.22794	0.00792433	4.80556e-5	0.0523592	9.91058e-4
chr15	52937532	52937630	15289449	0	-	0.469388	(0.455,0.49]	chr15	1206821	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P22	ENSG00000259612.1	ENST00000559385.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	53	2	3.24286	3.877585	4.51231	2.77105e-4	1.73754e-6	0.00444204	6.36428e-5
chr9	120858786	120858875	10834163	0	-	0.505618	(0.49,0.53]	chr9	820528	1	INTRON	INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5:ENST00000487555.5:ENST00000462229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	55	2	3.52514	3.8775000000000004	4.22986	4.98361e-5	1.25249e-5	0.0011306	3.30689e-4
chr3	51388904	51388989	3473947	0	+	0.517647	(0.49,0.53]	chr3	303594	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MANF	ENSG00000145050.19	ENST00000528157.7:ENST00000446668.5:ENST00000470900.1:ENST00000649711.1:ENST00000482262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	2.99849	3.8774749999999996	4.75646	0.00630123	3.50447e-9	0.0445415	3.13339e-7
chr16	368567	368635	15817064	0	-	0.617647	(0.59,1]	chr16	1260187	2	CDS	CDS:EXON_MRNA	MRPL28	ENSG00000086504.18	ENST00000648346.1:ENST00000199706.13:ENST00000483764.5:ENST00000481453.5:ENST00000461550.5:ENST00000469744.1:ENST00000389675.6:ENST00000441883.5:ENST00000447696.5:ENST00000450882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.44587	3.8774	5.30893	0.0105307	4.67312e-4	0.0644466	0.00661038
chr3	12155048	12155146	4040370	0	-	0.520408	(0.49,0.53]	chr3	339114	2	INTRON	INTRON	TIMP4	ENSG00000157150.5	ENST00000287814.5	protein_coding	protein_coding	protein_coding	protein_coding	26	415	2	3.62788	3.8771050000000002	4.12633	3.7247e-9	1.88238e-12	3.58356e-7	3.97536e-10
chr1	160295797	160295859	1328737	0	-	0.532258	(0.53,0.59]	chr1	136005	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000545284.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.35511	3.877055	5.399	0.0445399	3.02387e-5	0.172163	6.78876e-4
chr2	128116264	128116343	2059730	0	+	0.405063	(0.39,0.42]	chr2	193200	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.32811	3.876975	4.42584	0.00199429	0.00182819	0.0189001	0.0183913
chr17	72648881	72648961	16669297	0	-	0.675	(0.59,1]	chr17	1371722	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A11	ENSG00000133195.11	ENST00000255559.7:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	3.30708	3.876895	4.44671	0.00931497	0.00252451	0.0586162	0.0226777
chr18	12318737	12318837	16762204	0	+	0.44	(0.42,0.455]	chr18	1382521	73	INTRON	INTRON	TUBB6	ENSG00000176014.13	ENST00000590693.5:ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000586653.5:ENST00000590388.5:ENST00000592683.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.19674	3.87688	5.55702	0.0254904	7.30994e-6	0.117089	2.13219e-4
chr16	24158539	24158639	15598660	0	+	0.27	[0,0.29]	chr16	1236873	33	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000472066.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.8304	3.876805	4.92321	0.0121878	1.17014e-4	0.0701019	0.00222617
chr11	57738725	57738770	11952416	0	+	0.466667	(0.455,0.49]	chr11	914733	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.69053	3.876675	5.06282	0.0182983	1.16789e-4	0.0925808	0.0020505
chr11	57796634	57796724	11953020	0	+	0.477778	(0.455,0.49]	chr11	914817	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000682814.1:ENST00000681984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.69053	3.876675	5.06282	0.0182983	1.16789e-4	0.0925808	0.0020505
chr11	61789894	61789921	12405857	0	-	0.481481	(0.455,0.49]	chr11	960561	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMEM258	ENSG00000134825.16	ENST00000535042.1:ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.69053	3.876675	5.06282	0.0182983	1.16789e-4	0.0925808	0.0020505
chrX	30855079	30855176	19012425	0	-	0.484536	(0.455,0.49]	chrX	1617576	11	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.69053	3.876675	5.06282	0.0182983	1.16789e-4	0.0925808	0.0020505
chr6	34263491	34263582	7672396	0	-	0.538462	(0.53,0.59]	chr6	588025	3	EXON_PSEUDO	EXON_PSEUDO	RPL35P2	ENSG00000220583.1	ENST00000402419.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	2.56002	3.87645	5.19288	0.00634904	9.22873e-5	0.0446708	0.0016906
chr7	88218858	88218942	8914352	0	-	0.583333	(0.53,0.59]	chr7	680456	1	CDS	CDS:EXON_MRNA:INTRON	SRI	ENSG00000075142.14	ENST00000265729.7:ENST00000419179.5:ENST00000490437.5:ENST00000394641.7:ENST00000431660.5:ENST00000457606.5:ENST00000486860.5:ENST00000488015.5:ENST00000489079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.56002	3.87645	5.19288	0.00634904	9.22873e-5	0.0446708	0.0016906
chr2	219225141	219225212	3191341	0	-	0.492958	(0.49,0.53]	chr2	280887	2	CDS	CDS:UTR3:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000431715.5:ENST00000436856.5:ENST00000457841.5:ENST00000428226.5:ENST00000412355.5:ENST00000432520.5:ENST00000439812.5:ENST00000456708.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.11892	3.87615	4.63338	0.00398244	9.56909e-4	0.0322851	0.010724
chr14	95544224	95544324	14471355	0	+	0.39	(0.36,0.39]	chr14	1130380	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	3.59573	3.875915	4.1561	3.19976e-5	2.14257e-5	7.1032e-4	5.67278e-4
chr1	109231708	109231786	398049	0	+	0.461538	(0.455,0.49]	chr1	38577	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4:ENST00000471705.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.73142	3.87591	4.0204	0.00736097	2.35261e-4	0.0490627	0.00356397
chr14	102010004	102010086	14495432	0	+	0.47561	(0.455,0.49]	chr14	1133086	3	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.73142	3.87591	4.0204	0.00736097	2.35261e-4	0.0490627	0.00356397
chr8	8783748	8783847	9688745	0	-	0.464646	(0.455,0.49]	chr8	734266	5	UTR3	UTR3:EXON_MRNA	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.73142	3.87591	4.0204	0.00736097	2.35261e-4	0.0490627	0.00356397
chr1	198732479	198732556	648243	0	+	0.376623	(0.36,0.39]	chr1	65158	1	CDS	CDS:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000367367.8:ENST00000529828.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	22	2	2.63115	3.875845	5.12054	0.0245975	7.15553e-5	0.114841	0.00137393
chr11	5343054	5343146	12241524	0	-	0.456522	(0.455,0.49]	chr11	946162	5	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	70	2	3.50048	3.8757400000000004	4.251	5.99835e-5	2.66207e-7	0.00130886	1.29082e-5
chr21	45486926	45486992	18145667	0	+	0.742424	(0.59,1]	chr21	1539745	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	3.51608	3.8756899999999996	4.2353	0.0165254	0.00108676	0.0873033	0.0118659
chr9	464975	465069	10154831	0	+	0.287234	[0,0.29]	chr9	764633	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DOCK8	ENSG00000107099.17	ENST00000432829.7:ENST00000453981.5:ENST00000495184.5:ENST00000382329.1:ENST00000683406.1:ENST00000684637.1:ENST00000462618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	2.99212	3.875665	4.75921	0.0069187	2.77035e-4	0.0473262	0.00444204
chr1	167541802	167541901	1347834	0	-	0.525253	(0.49,0.53]	chr1	137992	9	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	3.54747	3.875615	4.20376	1.43152e-5	6.21089e-6	4.04062e-4	1.85694e-4
chr5	113018730	113018829	6153946	0	+	0.383838	(0.36,0.39]	chr5	480731	54	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.18642	3.87515	4.56388	0.00359152	1.11774e-6	0.0302391	4.4003e-5
chr11	9283523	9283569	12265133	0	-	0.434783	(0.42,0.455]	chr11	948393	1	CDS	CDS:UTR3:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.86513	3.875105	5.88508	0.0357107	8.1674e-7	0.147298	3.36299e-5
chr17	75849656	75849709	16685266	0	-	0.396226	(0.39,0.42]	chr17	1373638	2	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000588373.5:ENST00000433525.6:ENST00000416574.6:ENST00000589642.5:ENST00000587374.5:ENST00000593002.1:ENST00000589241.5:ENST00000590450.5:ENST00000589834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.60131	3.875085	4.14886	0.00415881	4.60576e-4	0.0325842	0.00611208
chr2	128183674	128183731	2060442	0	+	0.403509	(0.39,0.42]	chr2	193376	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7:ENST00000418197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.60131	3.875085	4.14886	0.00415881	4.60576e-4	0.0325842	0.00611208
chr7	44801303	44801362	8261666	0	+	0.491525	(0.49,0.53]	chr7	629476	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	117	2	2.90795	3.8750799999999996	4.84221	2.40571e-5	1.36913e-9	5.6648e-4	1.50118e-7
chr16	16083453	16083542	15568155	0	+	0.573034	(0.53,0.59]	chr16	1232763	2	CDS	CDS:EXON_MRNA:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	3.82407	3.8749000000000002	3.92573	0.0179666	8.62301e-5	0.0918323	0.00160749
chr7	20827667	20827753	8169906	0	+	0.546512	(0.53,0.59]	chr7	623035	5	EXON_PSEUDO	EXON_PSEUDO	RPL23P8	ENSG00000219451.3	ENST00000405810.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	3.82407	3.8749000000000002	3.92573	0.0179666	8.62301e-5	0.0918323	0.00160749
chr8	123183241	123183336	9588355	0	+	0.557895	(0.53,0.59]	chr8	727173	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10:ENST00000521468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.62668	3.8748449999999997	5.12301	0.00157636	1.2852e-4	0.015761	0.00241206
chr11	203814	203913	12225502	0	-	0.585859	(0.53,0.59]	chr11	943038	10	UTR3	UTR3:EXON_MRNA:INTRON	BET1L	ENSG00000177951.17	ENST00000410108.5:ENST00000325147.13:ENST00000382762.7	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.74542	3.8746750000000003	4.00393	0.0108084	2.30148e-4	0.064368	0.00352524
chr8	96965934	96965990	9503718	0	+	0.571429	(0.53,0.59]	chr8	722614	1	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.74542	3.8746750000000003	4.00393	0.0108084	2.30148e-4	0.064368	0.00352524
chr5	86884416	86884509	6679351	0	-	0.483871	(0.455,0.49]	chr5	515299	3	EXON_PSEUDO	EXON_PSEUDO	CTD-2161E19.1	ENSG00000242477.1	ENST00000486625.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	68	2	3.85686	3.874605	3.89235	9.60445e-5	5.71015e-7	0.00190731	2.4806e-5
chr1	161469369	161469469	1333890	0	-	0.65	(0.59,1]	chr1	136938	285	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	258	8110	2	3.39599	3.874485	4.35298	5.29442e-9	3.86569e-12	4.47332e-7	8.08246e-10
chr3	153164043	153164142	3818940	0	+	0.353535	(0.33,0.36]	chr3	325742	9	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	3.70092	3.874315	4.04771	1.07938e-7	3.9819e-8	5.96435e-6	2.80884e-6
chr8	127740769	127740858	9612678	0	+	0.483146	(0.455,0.49]	chr8	728498	5	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	3.7536	3.874295	3.99499	1.91791e-6	2.18261e-8	7.6073e-5	1.51908e-6
chr2	96861736	96861815	2792240	0	-	0.683544	(0.59,1]	chr2	249227	1	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.84944	3.8740050000000004	4.89857	0.0128238	0.00182139	0.0719798	0.0176016
chr17	48621930	48622027	16578562	0	-	0.536082	(0.53,0.59]	chr17	1361937	9	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	339	2	3.65571	3.87375	4.09179	7.99643e-9	6.45144e-11	7.02371e-7	9.22077e-9
chr6	149504969	149505064	8017094	0	-	0.315789	(0.29,0.33]	chr6	612493	6	UTR3	UTR3:EXON_MRNA	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.10761	3.873675	4.63974	6.03128e-4	4.81181e-4	0.00754033	0.00677016
chr19	2732940	2733031	17425548	0	-	0.703297	(0.59,1]	chr19	1453655	2	CDS	CDS:EXON_MRNA:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.5215	3.873495	5.22549	0.032241	5.13843e-4	0.135671	0.00665221
chr5	132758644	132758732	6836965	0	-	0.625	(0.59,1]	chr5	523099	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.5215	3.873495	5.22549	0.032241	5.13843e-4	0.135671	0.00665221
chr4	82851517	82851604	5496759	0	-	0.45977	(0.455,0.49]	chr4	440219	2	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.58479	3.8734699999999997	5.16215	0.00200187	5.04348e-5	0.0189555	0.00113788
chrX	66203434	66203505	18717659	0	+	0.549296	(0.53,0.59]	chrX	1597017	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1:ENST00000471121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	78	2	2.35511	3.87337	5.39163	0.0445399	1.91188e-9	0.172163	1.86267e-7
chr7	107986268	107986363	8987876	0	-	0.505263	(0.49,0.53]	chr7	687720	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1:ENST00000393560.5:ENST00000439976.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	3.73494	3.873325	4.01171	0.0189345	4.88513e-5	0.0934721	0.00100497
chr19	11436313	11436409	17231123	0	+	0.5625	(0.53,0.59]	chr19	1419876	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000591946.5:ENST00000589126.5:ENST00000588269.1:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	3.39827	3.872845	4.34742	1.84711e-5	1.5084e-7	5.02409e-4	7.98925e-6
chr6	26033468	26033568	7646936	0	-	0.6	(0.59,1]	chr6	582494	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC4	ENSG00000278463.2	ENST00000615868.2	protein_coding	protein_coding	protein_coding	protein_coding	6	164	2	2.40419	3.87283	5.34147	0.00139249	4.51262e-8	0.0143941	3.12108e-6
chr20	32142981	32143043	17752394	0	+	0.467742	(0.455,0.49]	chr20	1498476	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	3.46389	3.872795	4.2817	9.14164e-4	2.07199e-7	0.0110519	1.04734e-5
chr10	35569769	35569869	11009986	0	+	0.42	(0.39,0.42]	chr10	837264	7	UTR3	UTR3:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	3.59663	3.872745	4.14886	0.00415881	4.26553e-6	0.0325842	1.35769e-4
chr1	53807723	53807791	1025974	0	-	0.5	(0.49,0.53]	chr1	106406	2	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.66439	3.8725	5.08061	0.00134122	1.00361e-4	0.0139818	0.00196575
chrX	49591196	49591256	18695229	0	+	0.533333	(0.53,0.59]	chrX	1595048	1	CDS	CDS:EXON_MRNA	GAGE2A	ENSG00000189064.8	ENST00000362097.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	3.47419	3.872175	4.27016	8.75273e-4	2.78714e-7	0.0106963	1.34066e-5
chr11	64318120	64318215	11980480	0	+	0.747368	(0.59,1]	chr11	919229	1	UTR5	UTR5:EXON_MRNA	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.77418	3.872165	4.97015	0.0160729	0.00140057	0.0860154	0.0144327
chr6	37174855	37174950	7136302	0	+	0.284211	[0,0.29]	chr6	549953	9	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	19	209	2	3.22723	3.872115	4.517	3.56373e-7	1e-12	1.86092e-5	2.25522e-10
chr16	88738567	88738651	16074687	0	-	0.690476	(0.59,1]	chr16	1291764	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.92097	3.87211	4.82325	0.0102634	0.002381	0.0628742	0.0216895
chr3	13366018	13366091	4046715	0	-	0.69863	(0.59,1]	chr3	339654	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.92097	3.87211	4.82325	0.0102634	0.002381	0.0628742	0.0216895
chr5	32229081	32229180	6518021	0	-	0.626263	(0.59,1]	chr5	504832	22	UTR3	UTR3:EXON_MRNA	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.92097	3.87211	4.82325	0.0102634	0.002381	0.0628742	0.0216895
chr7	75983528	75983582	8342163	0	+	0.592593	(0.59,1]	chr7	636185	1	CDS	CDS:UTR3:EXON_MRNA	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1:ENST00000439269.1:ENST00000496888.5:ENST00000487247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.92097	3.87211	4.82325	0.0102634	0.002381	0.0628742	0.0216895
chr5	79562744	79562795	6663839	0	-	0.45098	(0.42,0.455]	chr5	514415	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000277818.1	ENST00000364639.2	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	23	2	2.94263	3.8716349999999995	4.80064	0.00766873	3.0479e-4	0.0503696	0.00472028
chr1	40271964	40272035	153015	0	+	0.366197	(0.36,0.39]	chr1	19163	2	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.02397	3.8716150000000003	4.71926	0.00674398	5.29682e-4	0.0461258	0.006804
chr18	12987248	12987344	16764019	0	+	0.385417	(0.36,0.39]	chr18	1382774	3	UTR3	UTR3:EXON_MRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.02397	3.8716150000000003	4.71926	0.00674398	5.29682e-4	0.0461258	0.006804
chr18	23533435	23533517	17037271	0	-	0.378049	(0.36,0.39]	chr18	1400529	2	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000591107.6:ENST00000590723.5:ENST00000593280.2:ENST00000586150.5:ENST00000269228.10:ENST00000588867.1:ENST00000591051.1:ENST00000587163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.02397	3.8716150000000003	4.71926	0.00674398	5.29682e-4	0.0461258	0.006804
chr1	40061734	40061812	151863	0	+	0.525641	(0.49,0.53]	chr1	18997	1	CDS	CDS:EXON_MRNA:INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.23006	3.87159	4.51312	0.00253719	0.00156636	0.0233955	0.0156889
chr1	183627431	183627531	1404932	0	-	0.52	(0.49,0.53]	chr1	142115	41	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.23006	3.87159	4.51312	0.00253719	0.00156636	0.0233955	0.0156889
chr1	225856651	225856738	1530648	0	-	0.505747	(0.49,0.53]	chr1	153051	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000487971.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.23006	3.87159	4.51312	0.00253719	0.00156636	0.0233955	0.0156889
chr11	65125772	65125872	11982538	0	+	0.53	(0.49,0.53]	chr11	919919	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL49	ENSG00000149792.9	ENST00000524482.5:ENST00000528529.1:ENST00000534078.1:ENST00000526319.5:ENST00000279242.7:ENST00000531705.1:ENST00000533943.1:ENST00000532671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.23006	3.87159	4.51312	0.00253719	0.00156636	0.0233955	0.0156889
chr11	65147583	65147680	11982555	0	+	0.350515	(0.33,0.36]	chr11	919923	1	EXON_SMALL	EXON_SMALL	RNU2-23P	ENSG00000222477.1	ENST00000410545.1	snRNA	snRNA	snRNA	snRNA	4	52	2	3.7289	3.8715149999999996	4.01413	1.33223e-5	2.36045e-6	3.48915e-4	9.07983e-5
chr20	47345355	47345455	17994484	0	-	0.52	(0.49,0.53]	chr20	1525054	264	INTRON	INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.99849	3.871435	4.74438	0.00630123	5.91752e-4	0.0445415	0.00743488
chr3	47427156	47427209	4160824	0	-	0.528302	(0.49,0.53]	chr3	348166	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5:ENST00000494938.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.99849	3.871435	4.74438	0.00630123	5.91752e-4	0.0445415	0.00743488
chr3	196237508	196237607	4663886	0	-	0.50505	(0.49,0.53]	chr3	385717	33	UTR3	UTR3:EXON_MRNA:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.99849	3.871435	4.74438	0.00630123	5.91752e-4	0.0445415	0.00743488
chr14	102727297	102727396	14500040	0	+	0.454545	(0.42,0.455]	chr14	1133640	9	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.06293	3.8713699999999998	4.67981	0.00492128	5.38444e-4	0.0366648	0.00744072
chr2	47373516	47373570	1784349	0	+	0.425926	(0.42,0.455]	chr2	172390	2	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000474691.1:ENST00000419334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.06293	3.8713699999999998	4.67981	0.00492128	5.38444e-4	0.0366648	0.00744072
chr3	131501530	131501622	4450572	0	-	0.445652	(0.42,0.455]	chr3	370147	1	CDS	CDS:UTR5:EXON_MRNA	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000425847.6:ENST00000507669.5:ENST00000512877.1:ENST00000510923.5:ENST00000510154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.06293	3.8713699999999998	4.67981	0.00492128	5.38444e-4	0.0366648	0.00744072
chr8	127738562	127738662	9612653	0	+	0.52	(0.49,0.53]	chr8	728489	1	CDS_START	CDS_START:CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	11	141	2	3.07953	3.87127	4.66301	1.09514e-6	7.33599e-9	4.3275e-5	6.50931e-7
chr10	63623741	63623840	11071629	0	+	0.333333	(0.33,0.36]	chr10	842295	30	UTR3	UTR3:EXON_MRNA	REEP3	ENSG00000165476.14	ENST00000373758.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.97606	3.871155	4.76625	0.00871774	3.84608e-4	0.0558165	0.00531017
chr22	30976151	30976250	18344848	0	+	0.343434	(0.33,0.36]	chr22	1559168	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.97606	3.871155	4.76625	0.00871774	3.84608e-4	0.0558165	0.00531017
chr17	41886209	41886308	16543944	0	-	0.585859	(0.53,0.59]	chr17	1356506	2	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.30943	3.87111	4.43279	0.0026472	0.0018255	0.0231864	0.0183913
chr17	41910221	41910284	16544203	0	-	0.571429	(0.53,0.59]	chr17	1356585	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000590770.5:ENST00000590735.1:ENST00000592970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.30943	3.87111	4.43279	0.0026472	0.0018255	0.0231864	0.0183913
chr17	48059445	48059541	16253370	0	+	0.583333	(0.53,0.59]	chr17	1317132	13	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000581319.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.7898	3.8710649999999998	4.95233	0.0128364	3.02711e-4	0.0719798	0.00439897
chr5	53884426	53884523	6575898	0	-	0.536082	(0.53,0.59]	chr5	509078	6	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.7898	3.8710649999999998	4.95233	0.0128364	3.02711e-4	0.0719798	0.00439897
chr5	178150824	178150924	6994019	0	-	0.55	(0.53,0.59]	chr5	535455	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NHP2	ENSG00000145912.9	ENST00000274606.8:ENST00000314397.8:ENST00000502263.1:ENST00000514354.5:ENST00000511078.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.7898	3.8710649999999998	4.95233	0.0128364	3.02711e-4	0.0719798	0.00439897
chr5	179730442	179730542	6414478	0	+	0.45	(0.42,0.455]	chr5	499211	19	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	284	2	3.50368	3.870955	4.23823	1.86259e-8	6.85851e-12	1.44788e-6	1.24237e-9
chr17	50381723	50381820	16585110	0	-	0.412371	(0.39,0.42]	chr17	1363112	6	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	10	158	2	3.42693	3.8707849999999997	4.31464	3.8197e-6	7.6993e-11	1.35409e-4	1.08138e-8
chr8	123207588	123207688	9588604	0	+	0.69	(0.59,1]	chr8	727198	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	6	187	2	3.72087	3.87064	4.02041	6.56476e-6	1.55371e-6	2.13052e-4	5.79065e-5
chrX	20150209	20150309	18985580	0	-	0.3	(0.29,0.33]	chrX	1616690	4	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.28545	3.870395	4.45534	0.00110984	4.11768e-5	0.0127344	8.82748e-4
chr17	48575599	48575692	16578086	0	-	0.387097	(0.36,0.39]	chr17	1361839	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HOXB3:HOXB4	ENSG00000120093.12:ENSG00000182742.6	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000552000.2:ENST00000332503.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.9102	3.87036	4.83052	5.15161e-4	3.15227e-4	0.00719513	0.00452711
chr8	97724969	97725069	9506389	0	+	0.42	(0.39,0.42]	chr8	722727	4	UTR3	UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.49701	3.87035	5.24369	0.0339607	4.15285e-5	0.141431	8.8376e-4
chr1	28484475	28484575	116907	0	+	0.25	[0,0.29]	chr1	14250	31	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000632421.1:ENST00000373839.8:ENST00000493669.2:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	3.28583	3.8700099999999997	4.45419	0.00346525	0.00133426	0.0293796	0.0139317
chr21	44866642	44866740	18277589	0	-	0.489796	(0.455,0.49]	chr21	1550285	6	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	3.20069	3.869725	4.53876	0.00285821	1.31171e-6	0.0245841	5.53834e-5
chr17	42842867	42842966	16230340	0	+	0.393939	(0.39,0.42]	chr17	1313600	14	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	3.59464	3.869705	4.14477	3.6617e-5	2.09513e-5	8.82767e-4	5.04211e-4
chr11	85988454	85988554	12526028	0	-	0.35	(0.33,0.36]	chr11	972201	41	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.77416	3.8695150000000003	4.96487	8.34192e-4	9.26851e-5	0.00978328	0.00185187
chr1	202727963	202728061	1451704	0	-	0.479592	(0.455,0.49]	chr1	145774	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr10	35569170	35569269	11009980	0	+	0.474747	(0.455,0.49]	chr10	837264	1	UTR3	UTR3:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr10	112965622	112965722	11259050	0	+	0.47	(0.455,0.49]	chr10	857742	6	INTRON	INTRON	TCF7L2	ENSG00000148737.17	ENST00000627217.3:ENST00000534894.5:ENST00000538897.5:ENST00000536810.5:ENST00000355995.8:ENST00000542695.5:ENST00000543371.5:ENST00000369397.8:ENST00000355717.9:ENST00000352065.10:ENST00000369395.6:ENST00000545257.6:ENST00000629706.2:ENST00000346198.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr12	54518650	54518732	12893855	0	+	0.463415	(0.455,0.49]	chr12	1003149	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr12	124431187	124431287	13598731	0	-	0.49	(0.455,0.49]	chr12	1071595	4	SS3_PROX	SS3_PROX:INTRON	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000429285.6:ENST00000458234.5:ENST00000420698.5:ENST00000542927.5:ENST00000448008.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr14	90401332	90401402	14455537	0	+	0.457143	(0.455,0.49]	chr14	1128570	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CALM1	ENSG00000198668.13	ENST00000557020.5:ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553995.5:ENST00000556757.5:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000555267.1:ENST00000553422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr15	78169887	78169985	15039143	0	+	0.459184	(0.455,0.49]	chr15	1182938	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	IDH3A	ENSG00000166411.14	ENST00000299518.7:ENST00000558535.1:ENST00000557960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr16	47566385	47566485	15932746	0	-	0.47	(0.455,0.49]	chr16	1277858	14	EXON_PSEUDO	EXON_PSEUDO	EIF4BP5	ENSG00000261336.1	ENST00000567338.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr18	9848233	9848330	16755526	0	+	0.484536	(0.455,0.49]	chr18	1381720	22	INTRON	INTRON	RAB31	ENSG00000168461.13	ENST00000578734.5:ENST00000578921.6:ENST00000581109.1:ENST00000435762.2:ENST00000583921.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr19	1171333	1171433	17418195	0	-	0.48	(0.455,0.49]	chr19	1452279	23	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr2	73449929	73450027	1886178	0	+	0.479592	(0.455,0.49]	chr2	178639	21	CDS	CDS:EXON_MRNA:INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682801.1:ENST00000682859.1:ENST00000682565.1:ENST00000684548.1:ENST00000683791.1:ENST00000684460.1:ENST00000684656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr2	175114798	175114868	3027451	0	-	0.485714	(0.455,0.49]	chr2	268053	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATF2	ENSG00000115966.17	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000538946.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr20	45892724	45892805	17803007	0	+	0.481481	(0.455,0.49]	chr20	1505426	1	CDS	CDS:UTR3:EXON_MRNA	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000676526.1:ENST00000606394.6:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000419493.3:ENST00000607814.7:ENST00000678331.1:ENST00000676657.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3:ENST00000485627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr22	31403116	31403204	18347306	0	+	0.488636	(0.455,0.49]	chr22	1559554	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DRG1	ENSG00000185721.13	ENST00000331457.9:ENST00000416465.5:ENST00000433341.5:ENST00000486584.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr22	36309338	36309396	18498314	0	-	0.465517	(0.455,0.49]	chr22	1578214	2	CDS	CDS:EXON_MRNA	MYH9	ENSG00000100345.22	ENST00000216181.11	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr4	2826957	2827048	4686457	0	+	0.483516	(0.455,0.49]	chr4	388713	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5:ENST00000504450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr6	145943142	145943236	8011655	0	-	0.489362	(0.455,0.49]	chr6	612114	1	CDS	CDS:UTR3:EXON_MRNA	SHPRH	ENSG00000146414.16	ENST00000367505.6:ENST00000275233.12:ENST00000438092.6:ENST00000629427.2:ENST00000433355.6:ENST00000519632.5:ENST00000367503.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr7	64736202	64736292	8832331	0	-	0.488889	(0.455,0.49]	chr7	674423	4	EXON_PSEUDO	EXON_PSEUDO	RP11-416N13.1	ENSG00000224172.1	ENST00000422823.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr7	72947711	72947810	8330254	0	+	0.464646	(0.455,0.49]	chr7	634065	16	UTR3	UTR3:EXON_MRNA:INTRON	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr8	42395083	42395133	9305546	0	+	0.46	(0.455,0.49]	chr8	712475	1	CDS	CDS:EXON_MRNA:INTRON	VDAC3	ENSG00000078668.14	ENST00000518563.5:ENST00000520115.5:ENST00000522069.5:ENST00000522572.5:ENST00000022615.9:ENST00000519072.5:ENST00000521348.5:ENST00000518495.5:ENST00000521158.5:ENST00000522010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chrX	139100015	139100115	19255976	0	-	0.48	(0.455,0.49]	chrX	1635598	1090	INTRON	INTRON	FGF13	ENSG00000129682.16	ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000448673.1:ENST00000421460.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.71798	3.86919	4.0204	0.0202679	0.00736097	0.0984041	0.0490627
chr11	118506349	118506448	12158979	0	+	0.575758	(0.53,0.59]	chr11	937104	41	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000534085.2:ENST00000647944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.77921	3.86873	4.95825	0.0132865	2.87508e-4	0.0740932	0.00457439
chr2	208239932	208240003	3142461	0	-	0.549296	(0.53,0.59]	chr2	277694	2	CDS	CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000484575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.77921	3.86873	4.95825	0.0132865	2.87508e-4	0.0740932	0.00457439
chr1	9729023	9729122	854598	0	-	0.474747	(0.455,0.49]	chr1	86233	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr1	19094905	19094965	875796	0	-	0.483333	(0.455,0.49]	chr1	89936	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1:ENST00000467272.6:ENST00000483922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr1	25568188	25568287	105280	0	+	0.464646	(0.455,0.49]	chr1	12345	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LDLRAP1	ENSG00000157978.12	ENST00000374338.5:ENST00000488127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr12	14497733	14497813	12745493	0	+	0.4875	(0.455,0.49]	chr12	990815	2	CDS	CDS:EXON_MRNA	ATF7IP	ENSG00000171681.13	ENST00000261168.9:ENST00000536444.5:ENST00000544627.5:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr15	64682984	64683083	14978103	0	+	0.464646	(0.455,0.49]	chr15	1177327	14	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr18	8732782	8732882	16749668	0	+	0.48	(0.455,0.49]	chr18	1381200	119	INTRON	INTRON	MTCL1	ENSG00000168502.17	ENST00000306329.15:ENST00000517570.5:ENST00000359865.7:ENST00000522146.1:ENST00000400050.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr19	2071821	2071919	17421608	0	-	0.479592	(0.455,0.49]	chr19	1453173	9	UTR3	UTR3:EXON_MRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr19	40629728	40629818	17330544	0	+	0.477778	(0.455,0.49]	chr19	1436078	3	UTR3	UTR3:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000396819.8:ENST00000243562.13:ENST00000595118.5:ENST00000598166.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr2	218345934	218346030	2389007	0	+	0.46875	(0.455,0.49]	chr2	214513	11	UTR3	UTR3:EXON_MRNA	PNKD	ENSG00000127838.14	ENST00000273077.9:ENST00000258362.7	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr2	229808310	229808369	3222925	0	-	0.474576	(0.455,0.49]	chr2	283404	2	CDS	CDS:EXON_MRNA	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr3	133806608	133806703	3752370	0	+	0.484211	(0.455,0.49]	chr3	321377	1	CDS	CDS:EXON_MRNA	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000484684.1:ENST00000678299.1:ENST00000494297.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr3	197776926	197777001	3991814	0	+	0.48	(0.455,0.49]	chr3	336439	1	CDS	CDS:UTR3:EXON_MRNA	FYTTD1	ENSG00000122068.13	ENST00000428738.5:ENST00000415708.6:ENST00000412924.5:ENST00000241502.9:ENST00000418169.5:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr6	12163380	12163478	7055934	0	+	0.489796	(0.455,0.49]	chr6	540296	2	CDS	CDS:UTR3:EXON_MRNA	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000399469.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr9	94415157	94415253	10367336	0	+	0.479167	(0.455,0.49]	chr9	780531	1	CDS	CDS:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chrX	120210917	120211002	19195123	0	-	0.482353	(0.455,0.49]	chrX	1631869	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	NKAPP1:EEF1A1P30	ENSG00000233382.7:ENSG00000237757.2	ENST00000555168.1:ENST00000554109.1:ENST00000429708.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chrX	120253993	120254089	18843998	0	+	0.489583	(0.455,0.49]	chrX	1605766	6	CDS	CDS:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.81275	3.86869	3.92463	0.0138827	0.0113417	0.0760883	0.0665375
chr12	79774449	79774547	13433689	0	-	0.336735	(0.33,0.36]	chr12	1057192	10	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.83586	3.86868	3.9015	1.7178e-4	9.11613e-5	0.00302124	0.00168187
chr7	130202010	130202091	9063511	0	-	0.54321	(0.53,0.59]	chr7	692191	3	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000471985.4	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	3.85383	3.86857	3.88331	5.99548e-6	1.02278e-7	1.97492e-4	5.6838e-6
chr15	74416644	74416714	15374498	0	-	0.471429	(0.455,0.49]	chr15	1215177	2	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.50904	3.8684900000000004	5.22794	0.0310515	4.80556e-5	0.131262	9.91058e-4
chr1	89871842	89871942	348480	0	+	0.33	(0.29,0.33]	chr1	34158	248	INTRON	INTRON	RP11-302M6.4:LRRC8D	ENSG00000271949.1:ENSG00000171492.14	ENST00000370453.5:ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.92065	3.868415	4.81618	0.0117842	2.74489e-4	0.0686664	0.00406677
chr7	132784869	132784964	9075490	0	-	0.305263	(0.29,0.33]	chr7	692998	1	UTR3	UTR3:EXON_MRNA	CHCHD3	ENSG00000106554.13	ENST00000262570.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.92065	3.868415	4.81618	0.0117842	2.74489e-4	0.0686664	0.00406677
chr20	47209309	47209405	17993100	0	-	0.291667	(0.29,0.33]	chr20	1524924	2	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.48001	3.868305	4.2566	0.00303129	0.00126219	0.0257942	0.013837
chr12	7158753	7158849	12717480	0	+	0.489583	(0.455,0.49]	chr12	987745	8	UTR3	UTR3:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	3.73589	3.86829	4.00069	2.30579e-4	5.13615e-5	0.00382267	0.00104999
chr4	110160079	110160179	5596160	0	-	0.39	(0.36,0.39]	chr4	446497	541	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	3.49441	3.868175	4.24194	0.00276729	7.81559e-4	0.0247437	0.00927662
chr5	43675590	43675670	5960671	0	+	0.375	(0.36,0.39]	chr5	467126	2	CDS	CDS:UTR3:EXON_MRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.49441	3.868175	4.24194	0.00276729	7.81559e-4	0.0247437	0.00927662
chr7	151099820	151099920	8617691	0	+	0.37	(0.36,0.39]	chr7	658412	89	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.49441	3.868175	4.24194	0.00276729	7.81559e-4	0.0247437	0.00927662
chr16	23467290	23467389	15894376	0	-	0.50505	(0.49,0.53]	chr16	1272095	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	146	2	3.36381	3.867925	4.37204	3.03526e-7	6.92234e-9	1.62555e-5	5.64139e-7
chr3	152447619	152447696	3818347	0	+	0.506494	(0.49,0.53]	chr3	325678	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	3.23006	3.86776	4.50546	0.00253719	1.89933e-6	0.0233955	6.87959e-5
chr6	27810173	27810243	7105134	0	+	0.614286	(0.59,1]	chr6	543456	1	CDS	CDS:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	6	187	2	3.19127	3.8677399999999995	4.54421	4.28947e-5	2.35191e-7	9.08523e-4	1.31076e-5
chr19	49952993	49953093	17608640	0	-	0.54	(0.53,0.59]	chr19	1484548	2	INTRON	INTRON	CTC-326K19.6:SIGLEC11	ENSG00000269179.1:ENSG00000161640.15	ENST00000451973.1:ENST00000447370.6:ENST00000426971.2:ENST00000426296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	52	925	2	2.77807	3.8677099999999998	4.95735	2.25784e-7	1e-12	1.26639e-5	2.25522e-10
chr18	31536277	31536353	16809056	0	+	0.5	(0.49,0.53]	chr18	1386456	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.99849	3.8676250000000003	4.73676	0.00630123	3.38109e-7	0.0445415	1.5857e-5
chr6	152970709	152970799	8029500	0	-	0.322222	(0.29,0.33]	chr6	614119	3	UTR3	UTR3:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.9319	3.86756	4.80322	0.00145571	2.14303e-4	0.0148357	0.00359478
chr1	23079035	23079106	97742	0	+	0.535211	(0.53,0.59]	chr1	11293	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	3.00674	3.8674800000000005	4.72822	8.9408e-4	4.40858e-7	0.01086	1.99026e-5
chr10	69382486	69382562	11096655	0	+	0.578947	(0.53,0.59]	chr10	843777	1	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.47	3.8674550000000005	5.26491	0.0089333	6.31437e-5	0.0567495	0.00124286
chr19	3368935	3369034	17201194	0	+	0.50505	(0.49,0.53]	chr19	1413685	19	INTRON	INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.1011	3.86724	4.63338	9.56909e-4	5.69237e-4	0.010724	0.00778538
chr20	35653346	35653436	17954991	0	-	0.544444	(0.53,0.59]	chr20	1521107	9	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.14885	3.867075	5.5853	0.0262993	9.83355e-6	0.117164	2.98194e-4
chr6	127775217	127775317	7947175	0	-	0.37	(0.36,0.39]	chr6	607799	550	INTRON	INTRON	THEMIS	ENSG00000172673.11	ENST00000368250.5:ENST00000537166.5:ENST00000368248.4:ENST00000626040.2:ENST00000630369.2	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.46497	3.867065	4.26916	0.00105709	9.09682e-6	0.0123035	2.53877e-4
chr11	57796902	57796992	11953023	0	+	0.577778	(0.53,0.59]	chr11	914817	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000682814.1:ENST00000681984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.17542	3.86701	4.5586	0.00161229	3.78824e-4	0.0169168	0.00525548
chr11	112032498	112032598	12603703	0	-	0.41	(0.39,0.42]	chr11	977253	1	EXON_SMALL	EXON_SMALL	RNU6-893P	ENSG00000238444.1	ENST00000458841.1	snRNA	snRNA	snRNA	snRNA	4	38	2	2.02663	3.866775	5.70692	0.0130764	2.36087e-6	0.0729985	8.27472e-5
chr5	180792112	180792207	7007876	0	-	0.642105	(0.59,1]	chr5	537113	5	CDS	CDS:EXON_MRNA	MGAT1	ENSG00000131446.17	ENST00000307826.5:ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000427865.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.69477	3.866555	5.03834	0.020208	0.00108238	0.0978331	0.0118355
chr7	87876271	87876360	8914203	0	-	0.640449	(0.59,1]	chr7	680417	3	UTR5	UTR5:EXON_MRNA	SLC25A40	ENSG00000075303.13	ENST00000341119.10:ENST00000444363.5:ENST00000491499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.69477	3.866555	5.03834	0.020208	0.00108238	0.0978331	0.0118355
chr2	216119103	216119165	2379837	0	+	0.33871	(0.33,0.36]	chr2	213774	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	3.52547	3.8665149999999997	4.20756	0.00386591	7.60232e-5	0.0310764	0.00159574
chr5	126777694	126777780	6202246	0	+	0.732558	(0.59,1]	chr5	483163	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.9891200000000002	3.8664500000000004	4.74378	0.00823979	0.00312942	0.0540283	0.0264364
chr1	149543099	149543192	463447	0	+	0.516129	(0.49,0.53]	chr1	46562	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CH17-159N18.5:NBPF19	ENSG00000286185.1:ENSG00000271383.8	ENST00000621744.4:ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chr16	70528934	70528997	15729707	0	+	0.492063	(0.49,0.53]	chr16	1252887	2	CDS	CDS:UTR5:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000577085.1:ENST00000302516.10:ENST00000567654.1:ENST00000569687.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chr19	55091006	55091099	17630172	0	-	0.526882	(0.49,0.53]	chr19	1488732	2	UTR3	UTR3:EXON_MRNA	PPP1R12C	ENSG00000125503.13	ENST00000591938.5:ENST00000263433.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chr22	39420728	39420827	18370033	0	+	0.494949	(0.49,0.53]	chr22	1563121	7	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chr6	36855812	36855912	7682948	0	-	0.53	(0.49,0.53]	chr6	589170	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chr7	24784462	24784533	8728767	0	-	0.521127	(0.49,0.53]	chr7	666299	3	EXON_LNCRNA	EXON_LNCRNA	CTA-385F2.1	ENSG00000287093.1	ENST00000666237.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chrX	130013245	130013344	18857818	0	+	0.525253	(0.49,0.53]	chrX	1606885	4	CDS	CDS:EXON_MRNA	BCORL1	ENSG00000085185.16	ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.44951	3.866415	4.28332	0.0405223	0.00338762	0.153343	0.0288632
chr12	6388397	6388451	12712804	0	+	0.574074	(0.53,0.59]	chr12	986388	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	LTBR	ENSG00000111321.11	ENST00000539925.5:ENST00000228918.9:ENST00000543190.5:ENST00000544454.5:ENST00000541102.1:ENST00000541005.1:ENST00000543542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	3.56863	3.86623	4.16383	0.00659193	3.93456e-5	0.0454205	8.48445e-4
chr1	179076075	179076173	575682	0	+	0.44898	(0.42,0.455]	chr1	59700	41	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.77666	3.86602	3.95538	1.85215e-4	6.68846e-5	0.00296795	0.00142352
chr21	14373810	14373905	18163692	0	-	0.442105	(0.42,0.455]	chr21	1542399	2	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.77666	3.86602	3.95538	1.85215e-4	6.68846e-5	0.00296795	0.00142352
chr12	110720668	110720761	13539222	0	-	0.376344	(0.36,0.39]	chr12	1065103	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	172	2	3.16885	3.865785	4.56272	5.10462e-7	1.75134e-11	2.51585e-5	2.87671e-9
chr12	57717869	57717958	12904314	0	+	0.426966	(0.42,0.455]	chr12	1005892	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550438.5:ENST00000550699.5:ENST00000550202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	79	2	3.08182	3.8650599999999997	4.6483	6.80627e-4	9.06218e-9	0.00876781	7.13525e-7
chr16	85590569	85590669	15797227	0	+	0.46	(0.455,0.49]	chr16	1256993	339	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.46389	3.86491	4.26593	0.00372962	9.14164e-4	0.0302984	0.0110519
chr2	97647995	97648008	1946482	0	+	0.461538	(0.455,0.49]	chr2	184723	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COX5B	ENSG00000135940.7	ENST00000258424.3:ENST00000464949.5:ENST00000491989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.96925	3.864865	4.76048	0.00698725	3.99985e-4	0.0473262	0.00588767
chr7	75185957	75186052	8857915	0	-	0.315789	(0.29,0.33]	chr7	676725	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	6	37	2	1.88142	3.8648100000000003	5.8482	0.0142455	4.72847e-7	0.0779233	2.10391e-5
chr6	42829579	42829677	7153365	0	+	0.459184	(0.455,0.49]	chr6	552130	12	CDS	CDS:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.08961	3.864695	4.63978	0.00445157	6.94032e-4	0.0340751	0.00876781
chr17	8542106	8542193	16433672	0	-	0.528736	(0.49,0.53]	chr17	1340751	1	CDS	CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000584124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.60653	3.86458	4.12263	0.00591451	4.50981e-4	0.0427941	0.00605268
chr7	42926610	42926668	8791671	0	-	0.362069	(0.36,0.39]	chr7	670218	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	3.48669	3.8643149999999995	4.24194	0.00276729	6.40815e-5	0.0247437	0.00125657
chr1	37997041	37997131	950320	0	-	0.533333	(0.53,0.59]	chr1	100148	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.0404	3.864255	5.68811	0.0362529	5.40688e-6	0.148525	1.64762e-4
chr2	179739316	179739416	3050506	0	-	0.46	(0.455,0.49]	chr2	270803	793	INTRON	INTRON	ZNF385B	ENSG00000144331.20	ENST00000410066.7:ENST00000409343.5:ENST00000475539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	102	2	2.61558	3.8641949999999996	5.11281	0.00184897	1.01724e-10	0.0185736	1.37931e-8
chr3	193694605	193694702	3982880	0	+	0.381443	(0.36,0.39]	chr3	335206	1	UTR3	UTR3:EXON_MRNA	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000646544.1:ENST00000495261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	3.4589	3.86403	4.26916	9.87237e-5	9.09682e-6	0.00194682	2.53877e-4
chr16	84744731	84744825	15790679	0	+	0.468085	(0.455,0.49]	chr16	1256672	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.85172	3.864025	4.87633	0.010864	2.95855e-4	0.0643837	0.00432147
chrX	16862954	16863027	18971875	0	-	0.465753	(0.455,0.49]	chrX	1615470	1	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000416035.1:ENST00000468092.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.85172	3.864025	4.87633	0.010864	2.95855e-4	0.0643837	0.00432147
chr20	32116629	32116728	17752124	0	+	0.393939	(0.39,0.42]	chr20	1498443	1	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.0503	3.863975	4.67765	0.00570576	7.04737e-4	0.0424438	0.00848325
chr5	103558976	103559074	6732810	0	-	0.408163	(0.39,0.42]	chr5	518432	2	CDS	CDS:EXON_MRNA	NUDT12	ENSG00000112874.10	ENST00000230792.7:ENST00000507423.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.0503	3.863975	4.67765	0.00570576	7.04737e-4	0.0424438	0.00848325
chr14	22926230	22926296	14527954	0	-	0.515152	(0.49,0.53]	chr14	1138161	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000555530.5:ENST00000556043.5:ENST00000553550.5:ENST00000554716.5:ENST00000553787.5:ENST00000553641.5:ENST00000554867.5:ENST00000557415.5:ENST00000556616.5:ENST00000554910.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.38097	3.8639349999999997	5.3469	0.0425419	2.75121e-5	0.167547	6.30607e-4
chr3	129397089	129397140	4444242	0	-	0.509804	(0.49,0.53]	chr3	369377	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RPL32P3	ENSG00000251474.6	ENST00000510078.5:ENST00000507287.5:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1:ENST00000359025.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.38097	3.8639349999999997	5.3469	0.0425419	2.75121e-5	0.167547	6.30607e-4
chr2	176201165	176201252	3029407	0	-	0.551724	(0.53,0.59]	chr2	268319	4	EXON_PSEUDO	EXON_PSEUDO	AC016739.2	ENSG00000218175.2	ENST00000405359.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	161	2	3.80417	3.8637449999999998	3.92332	3.68546e-6	7.9881e-9	1.31185e-4	6.38758e-7
chr16	70554445	70554521	15729982	0	+	0.421053	(0.42,0.455]	chr16	1252955	1	CDS	CDS:UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567635.5:ENST00000567250.5:ENST00000568291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.99701	3.8636850000000003	5.73036	0.0235036	2.37045e-6	0.111072	8.28831e-5
chr5	132204081	132204152	6833572	0	-	0.577465	(0.53,0.59]	chr5	522704	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.14205	3.8636749999999997	5.5853	0.0123179	9.83355e-6	0.070688	2.98194e-4
chr3	47850784	47850880	4163743	0	-	0.5625	(0.53,0.59]	chr3	348488	2	UTR3	UTR3:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.68432	3.86365	5.04298	0.00118971	1.91383e-4	0.0128045	0.0032874
chr22	38733089	38733189	18367599	0	+	0.64	(0.59,1]	chr22	1562698	25	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	3.61023	3.863475	4.11672	0.0222273	7.25496e-4	0.105595	0.00869086
chr20	57514666	57514741	18021720	0	-	0.52	(0.49,0.53]	chr20	1527416	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608858.5:ENST00000608108.1:ENST00000608720.5:ENST00000607923.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	3.1011	3.8634200000000005	4.62574	5.69237e-4	7.86745e-7	0.00778538	3.25904e-5
chr1	225831868	225831959	738162	0	+	0.428571	(0.42,0.455]	chr1	74413	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EPHX1	ENSG00000143819.13	ENST00000272167.10:ENST00000448202.5:ENST00000614058.4:ENST00000366837.5:ENST00000467015.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.59462	3.863155	5.13169	0.0062772	8.60227e-5	0.0445415	0.00160731
chr2	47476502	47476571	1785253	0	+	0.449275	(0.42,0.455]	chr2	172517	3	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.59462	3.863155	5.13169	0.0062772	8.60227e-5	0.0445415	0.00160731
chr12	101394182	101394279	13506199	0	-	0.494845	(0.49,0.53]	chr12	1061580	12	UTR3	UTR3:EXON_MRNA	ARL1	ENSG00000120805.14	ENST00000261636.13	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	3.6358	3.8631450000000003	4.09049	2.9452e-5	2.45857e-5	7.32348e-4	5.74553e-4
chr16	57253149	57253246	15683883	0	+	0.340206	(0.33,0.36]	chr16	1247542	9	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8:ENST00000563234.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.38729	3.863125	4.33896	0.00182033	1.20567e-4	0.0183913	0.00210079
chr8	59455884	59455947	9351329	0	+	0.555556	(0.53,0.59]	chr8	715177	1	EXON_SMALL	EXON_SMALL	RNA5SP267	ENSG00000201763.1	ENST00000364893.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	4	116	2	1.78041	3.862875	5.94534	0.0407112	1.05496e-11	0.163285	1.82477e-9
chr7	143307112	143307209	8581155	0	+	0.371134	(0.36,0.39]	chr7	655693	22	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.82613	3.862655	3.89918	1.39565e-4	1.0624e-4	0.0023599	0.00205241
chr7	56104391	56104475	8827442	0	-	0.690476	(0.59,1]	chr7	673698	3	CDS	CDS:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	141	2	3.25005	3.8626	4.47515	3.52567e-5	8.73507e-6	8.59798e-4	0.00024628300000000003
chr6	88276065	88276158	7829496	0	-	0.548387	(0.53,0.59]	chr6	599904	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-459O1.2:ACTBP8	ENSG00000234426.3:ENSG00000220267.1	ENST00000648572.1:ENST00000403258.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	48	2	3.69065	3.86259	4.03453	3.04331e-4	4.6e-5	0.00472028	9.56296e-4
chr17	81859145	81859245	16709667	0	-	0.54	(0.53,0.59]	chr17	1377719	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680719.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000679366.1:ENST00000681020.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	181	2	3.05264	3.862585	4.67253	1.96889e-5	7.10265e-11	5.29277e-4	1.00568e-8
chr6	7289863	7289931	7586892	0	-	0.470588	(0.455,0.49]	chr6	578695	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	3.76038	3.8625100000000003	3.96464	6.27408e-5	2.33038e-7	0.00135074	1.15307e-5
chr1	101025343	101025443	1200865	0	-	0.53	(0.49,0.53]	chr1	117301	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DPH5	ENSG00000117543.21	ENST00000370109.8:ENST00000370105.7:ENST00000488789.5:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5:ENST00000476507.1:ENST00000481982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.4415	3.8624099999999997	4.28332	0.00338762	9.98297e-4	0.0288632	0.0111246
chr17	31327666	31327766	16194187	0	+	0.53	(0.49,0.53]	chr17	1307401	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	NF1	ENSG00000196712.18	ENST00000356175.7:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000581113.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.4415	3.8624099999999997	4.28332	0.00338762	9.98297e-4	0.0288632	0.0111246
chr5	43659260	43659350	5960507	0	+	0.522222	(0.49,0.53]	chr5	467120	2	CDS	CDS:UTR3:EXON_MRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.4415	3.8624099999999997	4.28332	0.00338762	9.98297e-4	0.0288632	0.0111246
chr1	203256108	203256200	668193	0	+	0.445652	(0.42,0.455]	chr1	67291	5	EXON_PSEUDO	EXON_PSEUDO	NPM1P40	ENSG00000236523.2	ENST00000412758.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	35	2	2.22933	3.861805	5.49428	0.0102262	1.07978e-5	0.062872	2.9314e-4
chr6	28904371	28904469	7652697	0	-	0.510204	(0.49,0.53]	chr6	583186	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	3.76099	3.86163	3.96227	2.00194e-4	2.55585e-6	0.0034021	8.83735e-5
chr3	46735419	46735515	4156589	0	-	0.375	(0.36,0.39]	chr3	347599	8	INTRON	INTRON	RP11-316F12.1:PRSS46P	ENSG00000206549.13:ENSG00000261603.3	ENST00000460241.2:ENST00000463091.2:ENST00000645911.2	protein_coding	protein_coding	protein_coding:transcribed_unitary_pseudogene	protein_coding:processed_transcript:transcribed_unitary_pseudogene	2	47	2	2.84089	3.86124	4.88159	0.0128123	9.07455e-8	0.0719798	5.13369e-6
chr1	51784441	51784511	191655	0	+	0.428571	(0.42,0.455]	chr1	24563	1	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.36247	3.86122	5.35997	0.0462889	2.41298e-5	0.176878	5.6648e-4
chr1	53807655	53807723	1025973	0	-	0.441176	(0.42,0.455]	chr1	106406	1	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.36247	3.86122	5.35997	0.0462889	2.41298e-5	0.176878	5.6648e-4
chr6	99567338	99567438	7859085	0	-	0.31	(0.29,0.33]	chr6	602017	3	SS3_PROX	SS3_PROX:INTRON	CCNC	ENSG00000112237.13	ENST00000520429.6:ENST00000326298.8:ENST00000369220.8:ENST00000520371.5:ENST00000523961.5:ENST00000523799.5:ENST00000523985.5:ENST00000518714.5:ENST00000484049.6:ENST00000524049.5:ENST00000627680.2:ENST00000521017.5:ENST00000523639.5:ENST00000369217.8:ENST00000482541.2:ENST00000523541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.08261	3.861175	4.63974	0.0048227	4.81181e-4	0.0365653	0.00677016
chr1	156727552	156727652	1316682	0	-	0.45	(0.42,0.455]	chr1	133932	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ISG20L2	ENSG00000143319.17	ENST00000313146.10:ENST00000368219.2:ENST00000470713.1:ENST00000469074.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.17397	3.860945	4.54792	0.0031821	9.66045e-4	0.0267094	0.0115185
chr2	86776464	86776563	1928620	0	+	0.444444	(0.42,0.455]	chr2	181779	32	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.17397	3.860945	4.54792	0.0031821	9.66045e-4	0.0267094	0.0115185
chr20	35279099	35279196	17952408	0	-	0.587629	(0.53,0.59]	chr20	1520657	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP4-614O4.11:EIF6	ENSG00000261582.1:ENSG00000242372.9	ENST00000444717.1:ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	3.12943	3.860935	4.59244	4.81557e-4	1.19382e-6	0.00677016	4.64223e-5
chr2	27040932	27041027	1690680	0	+	0.589474	(0.53,0.59]	chr2	165370	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	3.49159	3.860905	4.23022	6.29049e-5	1.38676e-5	0.00135218	3.5918e-4
chr22	32498334	32498430	18354455	0	+	0.572917	(0.53,0.59]	chr22	1560439	3	CDS	CDS:UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	3.49159	3.860905	4.23022	6.29049e-5	1.38676e-5	0.00135218	3.5918e-4
chr11	46809807	46809874	12384192	0	-	0.41791	(0.39,0.42]	chr11	956196	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.57294	3.8609	4.14886	0.00415881	3.67751e-5	0.0325842	8.00584e-4
chrX	120442598	120442662	19196189	0	-	0.359375	(0.33,0.36]	chrX	1631985	1	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	82	2	3.36058	3.8608400000000005	4.3611	3.66613e-5	6.04322e-9	8.83327e-4	5.01634e-7
chr7	44831789	44831883	8800339	0	-	0.404255	(0.39,0.42]	chr7	671366	13	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.61392	3.860765	5.10761	0.0017565	5.12039e-5	0.0171455	0.00114668
chr16	58174450	58174510	15965781	0	-	0.35	(0.33,0.36]	chr16	1280965	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2:ENST00000562367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	3.19872	3.86069	4.52266	8.34989e-4	6.97647e-5	0.0102956	0.00134581
chr10	70423838	70423937	11100469	0	+	0.262626	[0,0.29]	chr10	844350	22	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	3.27044	3.860605	4.45077	1.01311e-5	4.37956e-8	3.04784e-4	2.74663e-6
chr20	5119637	5119698	17887835	0	-	0.590164	(0.59,1]	chr20	1514097	2	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.89783	3.86054	4.82325	0.002381	0.00198798	0.0216895	0.0195488
chr10	73396518	73396583	11571619	0	-	0.523077	(0.49,0.53]	chr10	880901	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.04107	3.8603949999999996	4.67972	0.00533879	6.94757e-4	0.0392268	0.00876781
chr6	26545769	26545866	7102830	0	+	0.505155	(0.49,0.53]	chr6	543213	4	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.04107	3.8603949999999996	4.67972	0.00533879	6.94757e-4	0.0392268	0.00876781
chr6	36871794	36871872	7683111	0	-	0.5	(0.49,0.53]	chr6	589185	2	CDS	CDS:EXON_MRNA	PPIL1	ENSG00000137168.8	ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.04107	3.8603949999999996	4.67972	0.00533879	6.94757e-4	0.0392268	0.00876781
chr1	109413067	109413135	1220490	0	-	0.441176	(0.42,0.455]	chr1	119091	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	3.37962	3.86017	4.34072	1.2947e-4	1.30212e-7	0.00242147	7.01492e-6
chr13	46143346	46143404	14009779	0	-	0.413793	(0.39,0.42]	chr13	1098517	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.94917	3.8601150000000004	4.77106	0.00121791	3.03764e-4	0.0130188	0.00472028
chr11	29276291	29276382	11886750	0	+	0.395604	(0.39,0.42]	chr11	908260	8	EXON_PSEUDO	EXON_PSEUDO	CTD-2063L20.1	ENSG00000255450.1	ENST00000525759.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.22662	3.8599300000000003	4.49324	0.00257296	0.00108192	0.0229363	0.0124943
chr17	30248473	30248563	16495757	0	-	0.411111	(0.39,0.42]	chr17	1349314	4	UTR3	UTR3:EXON_MRNA	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.22662	3.8599300000000003	4.49324	0.00257296	0.00108192	0.0229363	0.0124943
chr7	100090901	100090949	8425353	0	+	0.395833	(0.39,0.42]	chr7	642464	1	CDS	CDS:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000468499.5:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.22662	3.8599300000000003	4.49324	0.00257296	0.00108192	0.0229363	0.0124943
chr8	47817449	47817505	9815926	0	-	0.410714	(0.39,0.42]	chr8	742555	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.22662	3.8599300000000003	4.49324	0.00257296	0.00108192	0.0229363	0.0124943
chr6	113946007	113946077	7902986	0	-	0.442857	(0.42,0.455]	chr6	605409	1	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000520746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.04003	3.85992	4.67981	7.68268e-4	5.38444e-4	0.00916171	0.00744072
chrX	119591015	119591113	19191814	0	-	0.377551	(0.36,0.39]	chrX	1631496	17	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NKRF	ENSG00000186416.17	ENST00000304449.8:ENST00000649446.1:ENST00000542113.3:ENST00000487600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.29474	3.859885	4.42503	0.00194306	0.00133228	0.0185233	0.0144372
chr11	121304339	121304416	12176623	0	+	0.376623	(0.36,0.39]	chr11	939018	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SC5D	ENSG00000109929.10	ENST00000534455.5:ENST00000531140.1:ENST00000264027.9:ENST00000534230.5:ENST00000527762.5:ENST00000524683.5:ENST00000392789.2:ENST00000528991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.88918	3.85985	4.83052	0.00212816	3.15227e-4	0.0206577	0.00452711
chr7	12233873	12233973	8134860	0	+	0.39	(0.36,0.39]	chr7	621602	20	UTR3	UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000396668.8:ENST00000396667.7	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.88918	3.85985	4.83052	0.00212816	3.15227e-4	0.0206577	0.00452711
chr9	113407332	113407431	10807720	0	-	0.444444	(0.42,0.455]	chr9	819089	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	2.16214	3.85958	5.55702	0.00696724	7.30994e-6	0.0474632	2.13219e-4
chr1	55044010	55044034	203636	0	+	0.625	(0.59,1]	chr1	26119	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5:ENST00000673903.1:ENST00000673662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	3.74795	3.859565	3.97118	4.30112e-4	1.3379e-4	0.00620274	0.00229039
chr1	6591407	6591505	845347	0	-	0.612245	(0.59,1]	chr1	85371	8	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.16	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr11	46678840	46678938	12383233	0	-	0.632653	(0.59,1]	chr11	955923	19	UTR3	UTR3:EXON_MRNA	ARHGAP1	ENSG00000175220.12	ENST00000311956.9:ENST00000526423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr11	66346775	66346871	12424254	0	-	0.645833	(0.59,1]	chr11	964607	4	CDS	CDS:EXON_MRNA	B4GAT1	ENSG00000174684.7	ENST00000311181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr17	36599971	36600037	16211732	0	+	0.590909	(0.59,1]	chr17	1309719	1	CDS	CDS:EXON_MRNA	DHRS11	ENSG00000278535.5	ENST00000618403.5:ENST00000611337.4:ENST00000615432.4:ENST00000610443.1:ENST00000621871.1:ENST00000617959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr17	38760507	38760535	16217852	0	+	0.607143	(0.59,1]	chr17	1310751	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4:ENST00000614132.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr17	44384947	44385011	16558144	0	-	0.59375	(0.59,1]	chr17	1359495	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000592226.5:ENST00000591990.5:ENST00000589645.5:ENST00000592253.5:ENST00000592075.5:ENST00000592944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr19	9811094	9811194	17455906	0	-	0.68	(0.59,1]	chr19	1459971	2	CDS	CDS:UTR3:EXON_MRNA	FBXL12	ENSG00000127452.9	ENST00000589626.5:ENST00000586651.5:ENST00000247977.9:ENST00000588922.5:ENST00000585379.5:ENST00000591009.1:ENST00000592732.5:ENST00000589438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr19	49595864	49595962	17371409	0	+	0.72449	(0.59,1]	chr19	1443327	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PRR12	ENSG00000126464.14	ENST00000418929.7:ENST00000615927.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr20	2659698	2659793	17879603	0	-	0.6	(0.59,1]	chr20	1512924	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IDH3B	ENSG00000101365.21	ENST00000380851.9:ENST00000380843.9:ENST00000474315.5:ENST00000488299.5:ENST00000492240.5:ENST00000466494.6:ENST00000477689.2:ENST00000613370.1:ENST00000466999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr20	32234661	32234758	17752930	0	+	0.649485	(0.59,1]	chr20	1498585	1	UTR3	UTR3:EXON_MRNA	POFUT1	ENSG00000101346.14	ENST00000375749.8	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr22	50201136	50201226	18415519	0	+	0.822222	(0.59,1]	chr22	1568110	1	CDS	CDS:EXON_MRNA	SELENOO	ENSG00000073169.14	ENST00000611222.1:ENST00000380903.7	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr22	50504558	50504642	18547911	0	-	0.654762	(0.59,1]	chr22	1585006	1	CDS	CDS:EXON_MRNA	LMF2	ENSG00000100258.18	ENST00000474879.7:ENST00000216080.5:ENST00000504717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr3	143972803	143972896	3793968	0	+	0.731183	(0.59,1]	chr3	324036	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000491798.1:ENST00000483808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr7	873425	873519	8093911	0	+	0.62766	(0.59,1]	chr7	618494	2	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr7	55964609	55964701	8290039	0	+	0.826087	(0.59,1]	chr7	631384	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	NIPSNAP2	ENSG00000146729.10	ENST00000446692.5:ENST00000446778.5:ENST00000322090.8:ENST00000470036.5:ENST00000456204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr8	143918447	143918545	10146659	0	-	0.642857	(0.59,1]	chr8	763001	23	CDS	CDS:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8:ENST00000527096.5	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr9	137281350	137281449	10515684	0	+	0.727273	(0.59,1]	chr9	797349	15	UTR3	UTR3:EXON_MRNA	TOR4A	ENSG00000198113.3	ENST00000357503.3	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.84557	3.85945	3.87333	0.0410704	0.0348991	0.163285	0.141505
chr5	75350868	75350949	6037056	0	+	0.382716	(0.36,0.39]	chr5	473621	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	122	2	2.76213	3.859225	4.95632	1.84142e-4	1.52849e-11	0.00320813	2.55138e-9
chr1	96447821	96447921	366405	0	+	0.45	(0.42,0.455]	chr1	35865	10	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	94	2	3.00245	3.8591949999999997	4.71594	7.49627e-5	4.89851e-9	0.00157538	4.16525e-7
chr19	43774533	43774619	17580628	0	-	0.709302	(0.59,1]	chr19	1479122	5	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000599720.5:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.58138	3.8590850000000003	5.13679	0.00235862	9.28022e-4	0.0215532	0.0111748
chr2	110649305	110649377	2838033	0	-	0.388889	(0.36,0.39]	chr2	253306	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5:ENST00000490632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.6181	3.85875	5.0994	0.00176908	4.68763e-5	0.0172426	0.00107286
chr10	133368922	133369022	11754795	0	-	0.53	(0.49,0.53]	chr10	897310	1	CDS	CDS:EXON_MRNA	ECHS1	ENSG00000127884.5	ENST00000368547.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.72712	3.85873	4.99034	9.78408e-4	1.6002e-4	0.0109424	0.00286408
chr16	28383390	28383481	15905013	0	-	0.604396	(0.59,1]	chr16	1273457	4	CDS	CDS:EXON_MRNA	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.9228	3.85865	4.7945	0.00981698	0.0031766	0.0612992	0.0279054
chr7	100607451	100607523	8428011	0	+	0.625	(0.59,1]	chr7	643270	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000486440.5:ENST00000472348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.9228	3.85865	4.7945	0.00981698	0.0031766	0.0612992	0.0279054
chr9	14921608	14921707	10581561	0	-	0.454545	(0.42,0.455]	chr9	800961	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	59	2	3.52659	3.8584449999999997	4.1903	6.87022e-4	4.41719e-7	0.00876781	1.99209e-5
chr2	87824941	87825008	1934587	0	+	0.447761	(0.42,0.455]	chr2	182458	1	EXON_PSEUDO	EXON_PSEUDO	MTATP8P2	ENSG00000229604.2	ENST00000435212.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.19078	3.8583600000000002	4.52594	0.00310864	0.00144145	0.0274272	0.0147046
chr1	19084600	19084698	875682	0	-	0.540816	(0.53,0.59]	chr1	89893	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	3.39705	3.857995	4.31894	1.10308e-4	7.82085e-6	0.00211768	2.24148e-4
chr13	46782666	46782728	14012331	0	-	0.419355	(0.39,0.42]	chr13	1098864	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.67296	3.857735	5.04251	0.00159022	2.52401e-8	0.0168452	1.72157e-6
chr17	63752374	63752429	16634726	0	-	0.527273	(0.49,0.53]	chr17	1367572	2	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.33324	3.85758	4.38192	0.00259709	0.00162947	0.0229695	0.0169972
chr9	125362944	125363043	10461767	0	+	0.292929	(0.29,0.33]	chr9	788162	3	UTR3	UTR3:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	3.47125	3.8575600000000003	4.24387	0.00263476	7.49757e-5	0.0239118	0.00142868
chr3	196049283	196049381	4663133	0	-	0.295918	(0.29,0.33]	chr3	385550	1	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	3.85216	3.857545	3.86293	1.03145e-5	5.2702e-6	3.09366e-4	1.61486e-4
chr4	165342976	165343070	5206967	0	+	0.319149	(0.29,0.33]	chr4	420285	12	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	3.85216	3.857545	3.86293	1.03145e-5	5.2702e-6	3.09366e-4	1.61486e-4
chr5	163491746	163491843	6343791	0	+	0.329897	(0.29,0.33]	chr5	494110	7	UTR3	UTR3:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000393915.9:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.63162	3.85746	5.0833	0.00179843	4.57622e-5	0.0174371	0.00105479
chrX	41342573	41342653	18669424	0	+	0.475	(0.455,0.49]	chrX	1592195	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1:ENST00000647286.1:ENST00000642687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.83859	3.85746	4.87633	0.00215336	2.95855e-4	0.0208395	0.00432147
chr8	23260799	23260899	9229389	0	+	0.46	(0.455,0.49]	chr8	706439	3	UTR3	UTR3:EXON_MRNA	CHMP7	ENSG00000147457.14	ENST00000397677.6:ENST00000313219.8:ENST00000517325.5:ENST00000523091.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.74211	3.8573449999999996	4.97258	0.00330545	1.84876e-4	0.028478	0.00296795
chrX	142202865	142202965	19261776	0	-	0.51	(0.49,0.53]	chrX	1636100	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.8671	3.8572699999999998	4.84744	0.0100489	3.70203e-4	0.0623334	0.00515475
chr19	41331051	41331114	17568487	0	-	0.619048	(0.59,1]	chr19	1476878	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.61074	3.8571	5.10346	0.025486	8.40506e-4	0.117089	0.00981548
chr22	38742385	38742470	18511634	0	-	0.694118	(0.59,1]	chr22	1580337	2	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000477262.5:ENST00000469086.5:ENST00000464202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.61074	3.8571	5.10346	0.025486	8.40506e-4	0.117089	0.00981548
chr19	7627341	7627440	17447077	0	-	0.656566	(0.59,1]	chr19	1457904	2	CDS	CDS:EXON_MRNA	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	3.0542	3.85694	4.65968	0.00663549	0.00413632	0.0456243	0.0324998
chr19	18388935	18389015	17258403	0	+	0.625	(0.59,1]	chr19	1425390	1	UTR3	UTR3:EXON_MRNA	GDF15	ENSG00000130513.6	ENST00000252809.3	protein_coding	protein_coding	protein_coding	protein_coding	5	119	2	3.36866	3.856765	4.34487	0.0123678	6.19627e-6	0.0705839	1.85448e-4
chr1	1790461	1790528	829720	0	-	0.522388	(0.49,0.53]	chr1	82946	2	CDS	CDS:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5:ENST00000471354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.87268	3.856265	4.83985	0.00175078	1.50325e-7	0.0180053	7.97048e-6
chr10	74119167	74119266	11117659	0	+	0.333333	(0.33,0.36]	chr10	846311	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	104	2	3.78405	3.856	3.92795	6.60437e-8	4.42303e-8	4.33524e-6	2.76841e-6
chr3	33053490	33053549	4111525	0	-	0.525424	(0.49,0.53]	chr3	343505	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	3.58926	3.855945	4.12263	0.00591451	3.32125e-5	0.0427941	7.33555e-4
chr4	76280831	76280929	4895824	0	+	0.520408	(0.49,0.53]	chr4	403315	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FAM47E:FAM47E-STBD1	ENSG00000189157.14:ENSG00000272414.6	ENST00000510197.5:ENST00000515604.5:ENST00000424749.7:ENST00000651133.1:ENST00000514365.5:ENST00000509377.1:ENST00000502320.2:ENST00000514140.1:ENST00000511946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	3.58926	3.855945	4.12263	0.00591451	3.32125e-5	0.0427941	7.33555e-4
chr19	40619346	40619419	17330429	0	+	0.493151	(0.49,0.53]	chr19	1436036	1	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000612121.4:ENST00000600499.5:ENST00000610893.4:ENST00000612845.4:ENST00000599724.5:ENST00000597071.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000618486.4:ENST00000318809.11:ENST00000597816.5:ENST00000596351.5:ENST00000622107.4:ENST00000594448.5:ENST00000595665.1:ENST00000622457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.15207	3.85568	4.55929	0.00347189	0.00116196	0.0286293	0.0130851
chr2	144399004	144399100	2929342	0	-	0.479167	(0.455,0.49]	chr2	259644	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.40664	3.855275	5.30391	0.0123662	3.12735e-5	0.0705839	6.97306e-4
chr12	103941547	103941628	13056855	0	+	0.296296	(0.29,0.33]	chr12	1017338	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000550479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	3.13212	3.8551200000000003	4.57812	0.00551048	9.55291e-7	0.0414592	3.84721e-5
chr1	175107068	175107168	559698	0	+	0.52	(0.49,0.53]	chr1	58897	81	INTRON	INTRON	TNN	ENSG00000120332.16	ENST00000239462.9:ENST00000622870.4:ENST00000621086.1	protein_coding	protein_coding	protein_coding	protein_coding	11	179	2	3.73644	3.854945	3.97345	1.46923e-6	4.86066e-10	6.07568e-5	5.54726e-8
chr19	11449312	11449412	17231267	0	+	0.66	(0.59,1]	chr19	1419938	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000587290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	347	2	3.21172	3.8549350000000002	4.49815	4.00272e-6	5.83854e-9	1.41152e-4	4.89301e-7
chr11	14458609	14458687	12281558	0	-	0.448718	(0.42,0.455]	chr11	949572	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COPB1	ENSG00000129083.13	ENST00000525214.1:ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	2.50714	3.8549100000000003	5.20268	0.00122903	3.59669e-5	0.0130835	8.71318e-4
chrX	115703745	115703839	18834860	0	+	0.478723	(0.455,0.49]	chrX	1604659	11	EXON_PSEUDO	EXON_PSEUDO	EEF1GP5	ENSG00000234785.1	ENST00000434365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	2.83792	3.85489	4.87186	0.0110512	2.33781e-4	0.0665375	0.00385436
chr2	46905462	46905562	2629837	0	-	0.34	(0.33,0.36]	chr2	236787	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1:ENST00000409207.5:ENST00000470873.1:ENST00000409973.5:ENST00000409147.1:ENST00000409218.5:ENST00000412438.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	3.02394	3.8547700000000003	4.6856	8.89743e-4	3.92435e-4	0.0102057	0.00583618
chr11	130123611	130123695	12206915	0	+	0.654762	(0.59,1]	chr11	942028	1	CDS	CDS:EXON_MRNA:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.99438	3.8547399999999996	4.7151	0.00776449	0.00412279	0.050813	0.0325842
chr12	113388458	113388526	13101738	0	+	0.676471	(0.59,1]	chr12	1022446	1	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.99438	3.8547399999999996	4.7151	0.00776449	0.00412279	0.050813	0.0325842
chrX	302277	302375	18549185	0	+	0.591837	(0.59,1]	chrX	1585413	31	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.99438	3.8547399999999996	4.7151	0.00776449	0.00412279	0.050813	0.0325842
chr1	161206433	161206533	499104	0	+	0.54	(0.53,0.59]	chr1	53998	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFS2	ENSG00000158864.13	ENST00000479948.5:ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000496133.5:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000473321.1:ENST00000465923.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.36991	3.854695	5.33948	0.00501452	4.08763e-5	0.0370872	9.64741e-4
chr19	49556548	49556642	17606657	0	-	0.723404	(0.59,1]	chr19	1484048	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOSIP	ENSG00000142546.14	ENST00000596358.6:ENST00000339093.7:ENST00000598820.5:ENST00000601015.5:ENST00000601340.5:ENST00000596477.1:ENST00000598550.5:ENST00000599537.5:ENST00000598296.5:ENST00000594932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	1	37	2	2.76802	3.85466	4.9413	0.0158525	0.00191468	0.0854671	0.0190905
chrX	110173244	110173297	18820937	0	+	0.490566	(0.49,0.53]	chrX	1603937	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	3.42954	3.8545749999999996	4.27961	0.00105489	9.03426e-6	0.0123035	2.53429e-4
chr1	222734401	222734501	724626	0	+	0.25	[0,0.29]	chr1	73180	18	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.28583	3.854565	4.4233	0.00346525	3.05074e-6	0.0293796	1.02351e-4
chr2	69348252	69348334	2718550	0	-	0.451219	(0.42,0.455]	chr2	242045	2	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.7523	3.85445	4.9566	0.0153283	2.10615e-4	0.0828908	0.00327655
chr7	103297434	103297459	8440965	0	+	0.44	(0.42,0.455]	chr7	644982	1	UTR5	UTR5:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.7523	3.85445	4.9566	0.0153283	2.10615e-4	0.0828908	0.00327655
chr12	49003839	49003922	13322969	0	-	0.46988	(0.455,0.49]	chr12	1045343	2	CDS	CDS:UTR3:EXON_MRNA	RP11-386G11.12:PRKAG1	ENSG00000288710.1:ENSG00000181929.13	ENST00000683988.1:ENST00000548065.7:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551770.5:ENST00000551696.5:ENST00000550125.5:ENST00000552793.5:ENST00000548950.5:ENST00000549726.5:ENST00000551121.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.20069	3.85437	4.50805	0.00285821	0.00122223	0.0245841	0.0135383
chr17	82764932	82765025	16385493	0	+	0.473118	(0.455,0.49]	chr17	1332894	5	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	3.20069	3.85437	4.50805	0.00285821	0.00122223	0.0245841	0.0135383
chr20	5544828	5544926	17889013	0	-	0.489796	(0.455,0.49]	chr20	1514255	5	UTR3	UTR3:EXON_MRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.20069	3.85437	4.50805	0.00285821	0.00122223	0.0245841	0.0135383
chr3	12897433	12897530	4042294	0	-	0.463918	(0.455,0.49]	chr3	339374	5	UTR3	UTR3:EXON_MRNA	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.20069	3.85437	4.50805	0.00285821	0.00122223	0.0245841	0.0135383
chr9	5805026	5805121	10542746	0	-	0.484211	(0.455,0.49]	chr9	799394	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.20069	3.85437	4.50805	0.00285821	0.00122223	0.0245841	0.0135383
chr12	4559184	4559280	12705740	0	+	0.354167	(0.33,0.36]	chr12	985675	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAD51AP1	ENSG00000111247.15	ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000535558.5:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	3.36959	3.8542750000000003	4.33896	0.00182033	0.0014168	0.0183913	0.0145694
chr17	78172477	78172572	16367725	0	+	0.589474	(0.53,0.59]	chr17	1329566	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	3.55001	3.85403	4.15805	0.00680952	6.11776e-4	0.0468196	0.00818575
chr1	154237079	154237136	479794	0	+	0.508772	(0.49,0.53]	chr1	49631	2	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.99044	3.8538249999999996	5.71721	0.0435903	2.77472e-6	0.170594	9.47025e-5
chr5	134674694	134674775	6230325	0	+	0.518519	(0.49,0.53]	chr5	485176	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	1.99044	3.8538249999999996	5.71721	0.0435903	2.77472e-6	0.170594	9.47025e-5
chr1	30733050	30733147	915552	0	-	0.28866000000000003	[0,0.29]	chr1	95861	7	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	3.25677	3.85377	4.45077	4.37804e-6	4.37956e-8	1.5246e-4	2.74663e-6
chr8	144423804	144423895	10148892	0	-	0.571429	(0.53,0.59]	chr8	763711	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VPS28	ENSG00000160948.14	ENST00000377348.6:ENST00000292510.6:ENST00000526054.5:ENST00000526977.5:ENST00000529182.5:ENST00000526204.5:ENST00000530983.5:ENST00000528142.5:ENST00000530836.5:ENST00000527797.6:ENST00000533806.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.37399	3.8537500000000002	5.33351	0.0126178	4.35359e-5	0.0717599	0.00091744700000000005
chr9	129002895	129002975	10482810	0	+	0.5875	(0.53,0.59]	chr9	791158	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.37399	3.8537500000000002	5.33351	0.0126178	4.35359e-5	0.0717599	0.00091744700000000005
chr2	175927073	175927172	3028108	0	-	0.373737	(0.36,0.39]	chr2	268146	33	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.42114	3.8534949999999997	5.28585	0.00564641	2.81625e-5	0.0422191	6.42183e-4
chr6	17615516	17615613	7618874	0	-	0.42268	(0.42,0.455]	chr6	580511	6	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.05889	3.853425	4.64796	0.00524205	6.51077e-7	0.0399155	2.77961e-5
chr13	37025378	37025437	13969310	0	-	0.423729	(0.42,0.455]	chr13	1096099	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SUPT20H	ENSG00000102710.20	ENST00000350612.11:ENST00000490716.5:ENST00000360252.8:ENST00000495071.6:ENST00000475892.5:ENST00000356185.7:ENST00000469488.6:ENST00000542180.5:ENST00000464744.5:ENST00000466563.6:ENST00000493537.5:ENST00000476539.5:ENST00000490602.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.31161	3.853145	4.39468	0.00240483	0.00186138	0.0217482	0.018635
chr5	132217196	132217272	6833708	0	-	0.592105	(0.59,1]	chr5	522734	1	CDS	CDS:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6:ENST00000417528.5:ENST00000431054.5:ENST00000439698.5:ENST00000395164.5:ENST00000453286.5:ENST00000418055.5:ENST00000478055.1:ENST00000416053.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	77	2	3.53648	3.85312	4.16976	0.00107706	4.80088e-5	0.0124943	9.91058e-4
chr7	100630945	100631002	8952270	0	-	0.631579	(0.59,1]	chr7	684185	2	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	122	2	3.28861	3.8526299999999996	4.41665	0.0028753	4.24759e-7	0.0256141	1.9243e-5
chr18	23554832	23554908	17037508	0	-	0.447368	(0.42,0.455]	chr18	1400602	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000590301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	3.05889	3.852565	4.64624	0.00524205	8.75333e-4	0.0399155	0.0101169
chr20	63700252	63700347	18034866	0	-	0.452632	(0.42,0.455]	chr20	1529960	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARFRP1	ENSG00000101246.20	ENST00000612256.4:ENST00000614942.4:ENST00000619493.4:ENST00000622789.5:ENST00000618838.4:ENST00000612772.1:ENST00000610414.4:ENST00000612157.4:ENST00000618568.4:ENST00000610774.1:ENST00000609188.1:ENST00000607873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.05889	3.852565	4.64624	0.00524205	8.75333e-4	0.0399155	0.0101169
chr5	176384255	176384330	6988454	0	-	0.44	(0.42,0.455]	chr5	534279	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NOP16	ENSG00000048162.21	ENST00000619979.4:ENST00000621444.4:ENST00000614830.5:ENST00000616685.1:ENST00000618911.4:ENST00000502663.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.05889	3.852565	4.64624	0.00524205	8.75333e-4	0.0399155	0.0101169
chr8	21999535	21999604	9222073	0	+	0.449275	(0.42,0.455]	chr8	705036	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000517551.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.05889	3.852565	4.64624	0.00524205	8.75333e-4	0.0399155	0.0101169
chr22	40826441	40826537	18517888	0	-	0.416667	(0.39,0.42]	chr22	1580937	21	UTR3	UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8:ENST00000620312.4	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.59744	3.852525	5.10761	0.00572981	5.12039e-5	0.0417368	0.00114668
chr1	151068081	151068179	469980	0	+	0.295918	(0.29,0.33]	chr1	47855	7	UTR3	UTR3:EXON_MRNA	MLLT11	ENSG00000213190.4	ENST00000368921.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.8228	3.852435	3.88207	1.56259e-4	1.45428e-4	0.00282486	0.00244094
chr1	148170562	148170662	457133	0	+	0.45	(0.42,0.455]	chr1	45544	61	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	1	24	2	3.46349	3.85241	4.24133	0.00326918	9.0025e-4	0.0282494	0.0102618
chr1	154213892	154213946	1302882	0	-	0.444444	(0.42,0.455]	chr1	131213	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000368518.5:ENST00000368516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.46349	3.85241	4.24133	0.00326918	9.0025e-4	0.0282494	0.0102618
chr10	79314454	79314552	11148593	0	+	0.428571	(0.42,0.455]	chr10	847412	3	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.46349	3.85241	4.24133	0.00326918	9.0025e-4	0.0282494	0.0102618
chr2	135862606	135862677	2898138	0	-	0.43662	(0.42,0.455]	chr2	258536	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.46349	3.85241	4.24133	0.00326918	9.0025e-4	0.0282494	0.0102618
chr17	44035910	44036009	16556070	0	-	0.373737	(0.36,0.39]	chr17	1358855	17	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	3.26414	3.85208	4.44002	4.42599e-5	2.93008e-6	9.29425e-4	1.09386e-4
chr8	43019490	43019589	9307508	0	+	0.313131	(0.29,0.33]	chr8	712746	11	UTR3	UTR3:EXON_MRNA:INTRON	HOOK3:RP11-598P20.5	ENSG00000168172.9:ENSG00000254673.1	ENST00000307602.9:ENST00000533338.1:ENST00000534420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.67277	3.852005	5.03124	0.0255386	9.06368e-5	0.117089	0.00167558
chr1	100015341	100015441	376072	0	+	0.36	(0.33,0.36]	chr1	36433	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC35A3:RP4-714D9.5	ENSG00000117620.15:ENSG00000283761.1	ENST00000638371.1:ENST00000427993.7:ENST00000533028.8:ENST00000639221.1:ENST00000639807.1:ENST00000638336.1:ENST00000638792.1:ENST00000638968.1:ENST00000465289.6:ENST00000640715.1:ENST00000640726.1:ENST00000639040.1:ENST00000639037.1:ENST00000639994.1:ENST00000640360.1:ENST00000640178.1:ENST00000638988.1:ENST00000640732.1:ENST00000638779.1:ENST00000639088.1:ENST00000640600.1:ENST00000638338.1:ENST00000639171.1:ENST00000638876.1:ENST00000640238.1:ENST00000370155.9:ENST00000640357.1:ENST00000370153.6:ENST00000639148.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr12	62289588	62289687	12913345	0	+	0.343434	(0.33,0.36]	chr12	1006366	105	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000549523.5:ENST00000550632.5:ENST00000312635.10:ENST00000548524.5:ENST00000280377.10:ENST00000551206.5:ENST00000546718.5:ENST00000537297.2:ENST00000549237.5:ENST00000548836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr14	81176842	81176941	14730341	0	-	0.333333	(0.33,0.36]	chr14	1153987	15	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr2	43578512	43578607	2622396	0	-	0.347368	(0.33,0.36]	chr2	235963	1	CDS	CDS:EXON_MRNA	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402360.6:ENST00000404790.5:ENST00000474159.6:ENST00000403856.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr21	37501918	37502017	18117292	0	+	0.333333	(0.33,0.36]	chr21	1536292	7	EXON_MRNA	EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1:ENST00000646351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr3	45738577	45738671	3450105	0	+	0.351064	(0.33,0.36]	chr3	300518	1	CDS	CDS:UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000433336.1:ENST00000464102.5:ENST00000471207.1:ENST00000485311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr3	52266951	52267018	4182733	0	-	0.358209	(0.33,0.36]	chr3	352659	1	CDS	CDS:UTR5:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1:ENST00000469000.5:ENST00000463624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr8	73981521	73981621	9406608	0	+	0.34	(0.33,0.36]	chr8	718135	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM70	ENSG00000175606.11	ENST00000312184.6:ENST00000416961.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.57559	3.851995	4.1284	0.0262108	0.00407303	0.117079	0.0324137
chr22	39514685	39514776	18370737	0	+	0.406593	(0.39,0.42]	chr22	1563251	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	MIEF1	ENSG00000100335.15	ENST00000402881.5:ENST00000325301.7:ENST00000433117.6:ENST00000404569.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.91508	3.8519300000000003	4.78878	4.41174e-4	4.27222e-4	0.0062930699999999996	0.00577513
chr7	72907875	72907975	8329841	0	+	0.33	(0.29,0.33]	chr7	633994	164	INTRON	INTRON	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.38576	3.851755	5.31775	0.0439193	1.06766e-5	0.163572	3.17854e-4
chr11	59574991	59575090	12400596	0	-	0.464646	(0.455,0.49]	chr11	959394	7	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	6	93	2	3.0258	3.8517399999999995	4.67768	6.21073e-5	6.67496e-9	0.00134149	5.4538e-7
chr11	66845927	66845995	11992847	0	+	0.676471	(0.59,1]	chr11	922381	2	CDS	CDS:UTR3:EXON_MRNA	RCE1	ENSG00000173653.8	ENST00000533277.5:ENST00000524506.5:ENST00000309657.8:ENST00000524849.5:ENST00000525356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr12	57456560	57456654	12902417	0	+	0.62766	(0.59,1]	chr12	1005254	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	INHBE	ENSG00000139269.3	ENST00000551553.1:ENST00000547970.1:ENST00000266646.3:ENST00000553033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr19	11553646	11553745	17464366	0	-	0.646465	(0.59,1]	chr19	1462061	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5:ENST00000586120.5:ENST00000590700.5:ENST00000591912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr19	16523130	16523210	17491273	0	-	0.7	(0.59,1]	chr19	1466440	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6:ENST00000544299.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr20	49936412	49936512	17814466	0	+	0.73	(0.59,1]	chr20	1506926	1	CDS_START	CDS_START:CDS:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000624620.1:ENST00000622920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr22	19788708	19788808	18434048	0	-	0.67	(0.59,1]	chr22	1570966	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr4	189982989	189983082	5846633	0	-	0.645161	(0.59,1]	chr4	459310	6	EXON_PSEUDO	EXON_PSEUDO	TUBB7P	ENSG00000251297.1	ENST00000428444.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr7	45105602	45105683	8801034	0	-	0.62963	(0.59,1]	chr7	671565	3	CDS	CDS:EXON_MRNA	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000488222.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr7	151075423	151075508	8617531	0	+	0.623529	(0.59,1]	chr7	658383	3	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr8	35525665	35525763	9786518	0	-	0.673469	(0.59,1]	chr8	740155	6	EXON_PSEUDO	EXON_PSEUDO	LSM12P1	ENSG00000232024.2	ENST00000411836.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr8	103415021	103415105	9986873	0	-	0.619048	(0.59,1]	chr8	753655	2	UTR5	UTR5:EXON_MRNA:INTRON	SLC25A32:RP11-1C8.8	ENSG00000164933.12:ENSG00000285982.1	ENST00000521645.5:ENST00000523256.6:ENST00000297578.9:ENST00000649416.1:ENST00000523866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr8	142727528	142727611	9645788	0	+	0.710843	(0.59,1]	chr8	730676	2	CDS	CDS:EXON_MRNA	THEM6	ENSG00000130193.8	ENST00000336138.4	protein_coding	protein_coding	protein_coding	protein_coding	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr8	144360855	144360908	9652299	0	+	0.773585	(0.59,1]	chr8	731970	2	CDS	CDS:UTR3:EXON_MRNA	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	18	2	3.71566	3.851585	3.98751	0.0487443	0.0301044	0.175495	0.129773
chr16	46671704	46671782	15927237	0	-	0.551282	(0.53,0.59]	chr16	1277427	1	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.5393	3.851565	4.16383	0.00659193	6.46017e-4	0.0454205	0.00799743
chr6	44254705	44254805	7710358	0	-	0.58	(0.53,0.59]	chr6	591839	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	MIR4647:SLC35B2	ENSG00000284427.1:ENSG00000157593.19	ENST00000583964.1:ENST00000495706.1:ENST00000393810.5:ENST00000393812.4:ENST00000615337.4:ENST00000538577.5:ENST00000537814.2:ENST00000619636.4	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	28	2	3.5393	3.851565	4.16383	0.00659193	6.46017e-4	0.0454205	0.00799743
chr12	79775533	79775632	13433700	0	-	0.353535	(0.33,0.36]	chr12	1057192	21	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546762.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.18042	3.85154	4.52266	8.34989e-4	3.92606e-4	0.0102956	0.00539371
chr12	54518913	54518972	12893860	0	+	0.423729	(0.42,0.455]	chr12	1003154	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2:ENST00000549451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.46169	3.8515099999999998	4.24133	0.03884	0.00326918	0.149227	0.0282494
chr4	99071840	99071936	5548216	0	-	0.447917	(0.42,0.455]	chr4	443145	10	UTR3	UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.46169	3.8515099999999998	4.24133	0.03884	0.00326918	0.149227	0.0282494
chr6	31519964	31520045	7661059	0	-	0.432099	(0.42,0.455]	chr6	584668	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP9	ENSG00000219797.2	ENST00000403866.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.46169	3.8515099999999998	4.24133	0.03884	0.00326918	0.149227	0.0282494
chr7	95417682	95417781	8935244	0	-	0.444444	(0.42,0.455]	chr7	681858	10	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.46169	3.8515099999999998	4.24133	0.03884	0.00326918	0.149227	0.0282494
chr9	136474830	136474927	10890913	0	-	0.453608	(0.42,0.455]	chr9	827596	9	CDS	CDS:EXON_MRNA	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11:ENST00000371706.7:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.46169	3.8515099999999998	4.24133	0.03884	0.00326918	0.149227	0.0282494
chrX	71557245	71557296	18732970	0	+	0.431373	(0.42,0.455]	chrX	1598793	2	CDS	CDS:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.46169	3.8515099999999998	4.24133	0.03884	0.00326918	0.149227	0.0282494
chr5	10405557	10405617	5875236	0	+	0.416667	(0.39,0.42]	chr5	461989	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.44923	3.85149	4.25375	0.00105208	1.03195e-5	0.0123035	2.84226e-4
chr6	119179333	119179430	7919322	0	-	0.319588	(0.29,0.33]	chr6	606471	23	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	11	111	2	3.85106	3.851425	3.85179	2.30824e-8	1.12011e-8	1.59909e-6	9.38538e-7
chr7	103651724	103651789	8964819	0	-	0.507692	(0.49,0.53]	chr7	686329	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.38683	3.85128	5.31573	0.012654	2.59007e-9	0.0718207	2.41806e-7
chr19	18030882	18030975	17256831	0	+	0.537634	(0.53,0.59]	chr19	1424994	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	35	2	2.92962	3.85092	4.77222	0.0012954	6.67251e-4	0.0136936	0.00867533
chr15	38481291	38481373	14871720	0	+	0.378049	(0.36,0.39]	chr15	1167563	1	CDS	CDS:EXON_MRNA:INTRON	FAM98B	ENSG00000171262.11	ENST00000397609.6:ENST00000491535.5:ENST00000559431.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.76778	3.850795	4.93381	0.00365703	1.90009e-4	0.0307238	0.00302753
chr16	3727125	3727223	15831123	0	-	0.489796	(0.455,0.49]	chr16	1263725	22	UTR3	UTR3:EXON_MRNA	CREBBP	ENSG00000005339.15	ENST00000262367.10	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.63872	3.8507700000000002	5.06282	0.00510378	1.16789e-4	0.0390492	0.0020505
chr7	12342058	12342154	8683069	0	-	0.489583	(0.455,0.49]	chr7	663933	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.63872	3.8507700000000002	5.06282	0.00510378	1.16789e-4	0.0390492	0.0020505
chr14	102034117	102034188	14495717	0	+	0.507042	(0.49,0.53]	chr14	1133198	3	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	3.47167	3.850765	4.22986	6.95049e-5	1.25249e-5	0.00147069	3.30689e-4
chr1	21872185	21872281	891177	0	-	0.59375	(0.59,1]	chr1	92486	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000644714.1	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	3.44238	3.85074	4.2591	0.00158239	1.20565e-6	0.0167793	4.68197e-5
chr3	146533469	146533542	4498983	0	-	0.493151	(0.49,0.53]	chr3	373870	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000490745.5:ENST00000469266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	3.27328	3.8505900000000004	4.4279	0.00196987	2.21441e-4	0.0193972	0.00341572
chr22	49449310	49449410	18542357	0	-	0.38	(0.36,0.39]	chr22	1583944	77	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	26	2	3.37824	3.850305	4.32237	0.00273222	1.61189e-4	0.0237575	0.00287786
chr21	44805616	44805715	18277266	0	-	0.333333	(0.33,0.36]	chr21	1550219	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.46908	3.850265	4.23145	0.00114872	1.158e-5	0.0130528	3.09867e-4
chr7	92129032	92129056	8922262	0	-	0.333333	(0.33,0.36]	chr7	680673	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.46908	3.850265	4.23145	0.00114872	1.158e-5	0.0130528	3.09867e-4
chr7	130170399	130170473	9063185	0	-	0.351351	(0.33,0.36]	chr7	692141	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.46908	3.850265	4.23145	0.00114872	1.158e-5	0.0130528	3.09867e-4
chr13	30620284	30620380	13668721	0	+	0.34375	(0.33,0.36]	chr13	1076945	19	INTRON	INTRON	USPL1	ENSG00000132952.12	ENST00000465952.5:ENST00000255304.9:ENST00000614860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.28792	3.85023	5.41254	0.0239159	6.86094e-10	0.112531	7.48019e-8
chr8	144791276	144791330	10150944	0	-	0.574074	(0.53,0.59]	chr8	764125	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL8	ENSG00000161016.18	ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	162	2	3.60426	3.85014	4.09602	2.92959e-7	1.62316e-8	1.5775e-5	1.17683e-6
chr1	156317165	156317247	1314107	0	-	0.487805	(0.455,0.49]	chr1	133423	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	158	2	3.78055	3.8501399999999997	3.91973	5.28774e-8	6.70139e-9	3.5605e-6	5.47411e-7
chr16	69693142	69693242	15725286	0	+	0.42	(0.39,0.42]	chr16	1252127	15	CDS	CDS:UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.92895	3.8500050000000003	4.77106	3.36969e-4	3.03764e-4	0.00475537	0.00472028
chr16	88876012	88876108	16075712	0	-	0.40625	(0.39,0.42]	chr16	1291936	13	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	3.68154	3.849725	4.01791	3.05414e-4	4.78174e-5	0.00442973	0.00109049
chr15	57953817	57953915	15305092	0	-	0.418367	(0.39,0.42]	chr15	1208082	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	244	2	3.45705	3.849525	4.242	9.32406e-9	2.31106e-11	7.99812e-7	3.68168e-9
chr1	25900515	25900615	905270	0	-	0.43	(0.42,0.455]	chr1	94145	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	3.05063	3.849465	4.6483	5.43749e-5	9.06218e-9	0.00121043	7.13525e-7
chr1	95192956	95193055	362116	0	+	0.323232	(0.29,0.33]	chr1	35683	12	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	19	190	2	3.83619	3.84918	3.86217	7.48632e-10	2.24101e-10	8.91499e-8	2.78733e-8
chr13	46781555	46781615	14012319	0	-	0.433333	(0.42,0.455]	chr13	1098858	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000412582.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	3.35491	3.84912	4.34333	1.39104e-4	5.37112e-6	0.00235518	1.79904e-4
chr19	18574959	18575050	17258830	0	+	0.648352	(0.59,1]	chr19	1425551	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000595683.5:ENST00000595158.5:ENST00000598780.5:ENST00000599551.5:ENST00000597451.5:ENST00000599595.5:ENST00000596272.5:ENST00000594527.1	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	1.74555	3.84911	5.95267	0.0444308	2.38682e-5	0.165174	6.18922e-4
chr11	102349936	102350018	12112620	0	+	0.341463	(0.33,0.36]	chr11	932296	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	BIRC2	ENSG00000110330.9	ENST00000227758.7:ENST00000530675.5:ENST00000532832.5:ENST00000534646.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527465.1:ENST00000527910.5:ENST00000613397.4:ENST00000621637.1:ENST00000528344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.56949	3.848945	4.1284	0.00407303	5.48184e-4	0.0324137	0.00697082
chr22	22488725	22488820	18444770	0	-	0.336842	(0.33,0.36]	chr22	1572769	10	CDS	CDS:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.56949	3.848945	4.1284	0.00407303	5.48184e-4	0.0324137	0.00697082
chr8	103441454	103441536	9527361	0	+	0.341463	(0.33,0.36]	chr8	724379	1	CDS	CDS:EXON_MRNA	DCAF13	ENSG00000164934.14	ENST00000297579.9:ENST00000616836.4:ENST00000612750.5:ENST00000518554.2:ENST00000611541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.56949	3.848945	4.1284	0.00407303	5.48184e-4	0.0324137	0.00697082
chr11	251545	251626	11756131	0	+	0.395062	(0.39,0.42]	chr11	897606	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PSMD13	ENSG00000185627.18	ENST00000532097.6:ENST00000431206.6:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1:ENST00000533717.5:ENST00000527982.1:ENST00000532025.1:ENST00000529679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.75753	3.848745	3.93996	0.00841622	2.04026e-4	0.054565	0.00320361
chr18	23568910	23568998	17037655	0	-	0.409091	(0.39,0.42]	chr18	1400631	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.75753	3.848745	3.93996	0.00841622	2.04026e-4	0.054565	0.00320361
chr16	69163082	69163178	15721824	0	+	0.520833	(0.49,0.53]	chr16	1251865	1	CDS	CDS:EXON_MRNA	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.95291	3.848645	4.74438	0.00119735	5.91752e-4	0.0134293	0.00743488
chr6	36515492	36515592	7681519	0	-	0.43	(0.42,0.455]	chr6	588982	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.84538	3.84844	3.8515	0.0119089	1.2691e-4	0.0686664	0.00219756
chr17	46185722	46185822	16567061	0	-	0.53	(0.49,0.53]	chr17	1360785	131	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.30264	3.8483149999999995	5.39399	0.0165402	1.71804e-5	0.087611	4.72485e-4
chr2	119248030	119248118	2024384	0	+	0.647727	(0.59,1]	chr2	191386	5	CDS	CDS:EXON_MRNA	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.24972	3.848215	4.44671	0.00931497	0.00314037	0.0586162	0.0264943
chr3	50607880	50607967	4179549	0	-	0.597701	(0.59,1]	chr3	352075	3	CDS	CDS:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	3.24972	3.848215	4.44671	0.00931497	0.00314037	0.0586162	0.0264943
chr1	153631741	153631841	478312	0	+	0.52	(0.49,0.53]	chr1	49141	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	S100A1	ENSG00000160678.12	ENST00000368698.3:ENST00000469893.2:ENST00000368696.3:ENST00000292169.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	3.7546	3.848185	3.94177	0.0104929	2.09468e-4	0.063428	0.00327655
chr17	1679290	1679350	16401598	0	-	0.5	(0.49,0.53]	chr17	1334955	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.7546	3.848185	3.94177	0.0104929	2.09468e-4	0.063428	0.00327655
chr17	68528869	68528930	16337399	0	+	0.491803	(0.49,0.53]	chr17	1325386	1	CDS	CDS:UTR3:EXON_MRNA	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000585981.5:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5:ENST00000586541.5:ENST00000585907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.7546	3.848185	3.94177	0.0104929	2.09468e-4	0.063428	0.00327655
chr12	68627028	68627107	13394555	0	-	0.556962	(0.53,0.59]	chr12	1055117	3	EXON_PSEUDO	EXON_PSEUDO	RPL10P12	ENSG00000234040.3	ENST00000427342.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	27	2	2.65894	3.847995	5.03705	0.0193255	0.00020199200000000001	0.0943643	0.00317801
chr5	177305926	177305984	6406827	0	+	0.568965	(0.53,0.59]	chr5	498057	1	CDS	CDS:UTR3:EXON_MRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000503853.1:ENST00000510701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.65894	3.847995	5.03705	0.0193255	0.00020199200000000001	0.0943643	0.00317801
chr12	57718992	57719087	12904327	0	+	0.526316	(0.49,0.53]	chr12	1005900	1	CDS	CDS:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	3.54747	3.847855	4.14824	2.04708e-5	6.21089e-6	5.45523e-4	1.85694e-4
chr12	110736082	110736182	13539387	0	-	0.32	(0.29,0.33]	chr12	1065139	7	INTRON	INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1:ENST00000551690.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	17	2	3.13212	3.84774	4.56336	0.00551048	8.8231e-4	0.0414592	0.0101404
chr11	47468021	47468121	12386788	0	-	0.26	[0,0.29]	chr11	956932	22	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	3.48216	3.84762	4.21308	2.36705e-7	5.89211e-8	1.17021e-5	3.91694e-6
chr1	58631234	58631332	1055018	0	-	0.459184	(0.455,0.49]	chr1	108133	5	EXON_PSEUDO	EXON_PSEUDO	RP4-592A1.2	ENSG00000185839.3	ENST00000427762.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	2.53286	3.847505	5.16215	0.0282409	5.04348e-5	0.124386	0.00113788
chr7	45108826	45108900	8801070	0	-	0.459459	(0.455,0.49]	chr7	671576	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1:ENST00000471142.5:ENST00000475893.1:ENST00000482285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.53286	3.847505	5.16215	0.0282409	5.04348e-5	0.124386	0.00113788
chrX	39787131	39787222	19044749	0	-	0.472527	(0.455,0.49]	chrX	1618678	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	3.49306	3.8474749999999998	4.20189	0.00397662	6.07633e-5	0.0322851	0.00121305
chr2	96283623	96283713	2790353	0	-	0.555556	(0.53,0.59]	chr2	248728	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	67	2	2.87264	3.847455	4.82227	0.00168899	2.15841e-7	0.0175515	1.08163e-5
chr16	75634172	75634232	16039141	0	-	0.366667	(0.36,0.39]	chr16	1288316	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.48922	3.84739	5.20556	0.0110399	4.46552e-5	0.0652374	9.34801e-4
chrX	111621107	111621202	19174307	0	-	0.389474	(0.36,0.39]	chrX	1630748	16	EXON_PSEUDO	EXON_PSEUDO	EIF4BP7	ENSG00000225031.1	ENST00000432307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	26	2	2.48922	3.84739	5.20556	0.0110399	4.46552e-5	0.0652374	9.34801e-4
chr1	173831534	173831630	550045	0	+	0.395833	(0.39,0.42]	chr1	58428	1	CDS	CDS:UTR3:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000648458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.70591	3.84708	4.98825	0.0185716	1.62756e-4	0.0932453	0.00266622
chr15	22916476	22916563	15159382	0	-	0.402299	(0.39,0.42]	chr15	1192945	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000617556.4:ENST00000610365.4:ENST00000612288.1:ENST00000622576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.70591	3.84708	4.98825	0.0185716	1.62756e-4	0.0932453	0.00266622
chr4	94662421	94662479	4985248	0	+	0.396552	(0.39,0.42]	chr4	407473	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000380176.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	2.70591	3.84708	4.98825	0.0185716	1.62756e-4	0.0932453	0.00266622
chr9	128917940	128918039	10481912	0	+	0.393939	(0.39,0.42]	chr9	790907	17	UTR3	UTR3:EXON_MRNA	LRRC8A	ENSG00000136802.12	ENST00000372600.9:ENST00000372599.7:ENST00000259324.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.70591	3.84708	4.98825	0.0185716	1.62756e-4	0.0932453	0.00266622
chr19	58393115	58393185	17412753	0	+	0.557143	(0.53,0.59]	chr19	1451034	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	223	2	3.41551	3.847015	4.27852	1.30022e-7	6.86878e-10	7.00795e-6	8.2265e-8
chr7	56102938	56103011	8827426	0	-	0.561644	(0.53,0.59]	chr7	673692	2	CDS	CDS:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	213	2	3.4001	3.846905	4.29371	8.43882e-8	2.62946e-9	4.82965e-6	2.6571e-7
chr8	144360414	144360493	9652293	0	+	0.658228	(0.59,1]	chr8	731966	4	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000526779.3:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	3.06258	3.84682	4.63106	0.00616167	0.00537945	0.0438642	0.0406564
chr3	133588046	133588122	3750846	0	+	0.486842	(0.455,0.49]	chr3	321179	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000508481.5:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	3.01932	3.8468	4.67428	2.37034e-5	4.63488e-7	5.60012e-4	2.31256e-5
chr11	2919356	2919407	11769380	0	+	0.627451	(0.59,1]	chr11	900399	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000467719.5:ENST00000463571.5:ENST00000498209.6:ENST00000441077.5:ENST00000449603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.68392	3.846685	5.00945	0.0202468	0.00149725	0.0984041	0.0159607
chr17	82244107	82244203	16712132	0	-	0.5	(0.49,0.53]	chr17	1378461	16	UTR3	UTR3:EXON_MRNA:INTRON	CSNK1D	ENSG00000141551.14	ENST00000584672.1:ENST00000398519.9:ENST00000314028.10:ENST00000581241.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	3.23006	3.846545	4.46303	0.00253719	2.57025e-6	0.0233955	8.8687100000000007e-05
chr2	96293412	96293509	2790473	0	-	0.494845	(0.49,0.53]	chr2	248801	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.23006	3.846545	4.46303	0.00253719	2.57025e-6	0.0233955	8.8687100000000007e-05
chr11	27890733	27890833	12317026	0	-	0.37	(0.36,0.39]	chr11	952778	20	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	75	2	2.99569	3.8465050000000005	4.69732	7.37624e-5	4.58687e-9	0.00141413	4.29436e-7
chr16	18797924	18797984	15877131	0	-	0.45	(0.42,0.455]	chr16	1269316	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5:ENST00000567969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	136	2	3.3421	3.8462750000000003	4.35045	2.11287e-6	1.08207e-9	8.25826e-5	1.12256e-7
chr11	14505112	14505191	12282053	0	-	0.303797	(0.29,0.33]	chr11	949694	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	3.31614	3.84611	4.37608	3.2999e-4	5.05169e-9	0.00504024	4.28193e-7
chr3	158823427	158823525	3842973	0	+	0.489796	(0.455,0.49]	chr3	327163	1	CDS	CDS:UTR3:EXON_MRNA	MFSD1	ENSG00000118855.21	ENST00000622669.4:ENST00000392813.8:ENST00000484166.5:ENST00000651862.1:ENST00000415822.8:ENST00000480292.5:ENST00000264266.12:ENST00000471500.5:ENST00000477743.1:ENST00000465624.5:ENST00000465235.1:ENST00000468409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.49033	3.84611	4.20189	0.00397662	7.92678e-4	0.0322851	0.00933379
chr6	111559109	111559207	7897183	0	-	0.469388	(0.455,0.49]	chr6	604725	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAF3IP2	ENSG00000056972.20	ENST00000368761.11:ENST00000340026.10:ENST00000359831.8:ENST00000392556.8:ENST00000492671.1:ENST00000368731.6:ENST00000368735.1:ENST00000368734.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	3.49033	3.84611	4.20189	0.00397662	7.92678e-4	0.0322851	0.00933379
chr3	33124407	33124493	3397632	0	+	0.55814	(0.53,0.59]	chr3	295483	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1:ENST00000485310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	3.82407	3.8460799999999997	3.86809	0.0179666	1.18973e-4	0.0918323	0.00207755
chr1	21850430	21850498	890926	0	-	0.676471	(0.59,1]	chr1	92370	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	3.74795	3.846005	3.94406	4.30112e-4	8.69349e-6	0.00620274	2.45289e-4
chr2	10793148	10793202	2510824	0	-	0.592593	(0.59,1]	chr2	226708	2	CDS	CDS:EXON_MRNA	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	3.05115	3.845805	4.64046	0.00103208	3.26241e-6	0.0121443	1.08317e-4
chr7	75417933	75418029	8858929	0	-	0.572917	(0.53,0.59]	chr7	676960	13	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	121	2	2.09777	3.8457550000000005	5.59374	0.00149818	2.94146e-10	0.0152367	3.91689e-8
chr1	35115359	35115459	135902	0	+	0.36	(0.33,0.36]	chr1	16781	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM1	ENSG00000197056.11	ENST00000650449.1:ENST00000611874.4:ENST00000359858.9:ENST00000373330.1:ENST00000373329.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.3227	3.84574	4.36878	0.00222616	0.0021194	0.0211992	0.0198008
chr15	90228275	90228364	15098542	0	+	0.539326	(0.53,0.59]	chr15	1187809	5	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SEMA4B	ENSG00000185033.14	ENST00000332496.10:ENST00000411539.6:ENST00000560089.5:ENST00000558065.1:ENST00000559074.5:ENST00000559247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.38347	3.845615	4.30776	0.00407289	0.00132446	0.0324137	0.0138834
chr4	8095905	8096004	5302020	0	-	0.545455	(0.53,0.59]	chr4	427146	73	INTRON	INTRON	ABLIM2	ENSG00000163995.21	ENST00000361737.9:ENST00000676532.1:ENST00000447017.7:ENST00000545242.6:ENST00000341937.9:ENST00000361581.9:ENST00000407564.7:ENST00000505872.5:ENST00000428004.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.38347	3.845615	4.30776	0.00407289	0.00132446	0.0324137	0.0138834
chr11	14466281	14466353	12281641	0	-	0.402778	(0.39,0.42]	chr11	949597	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	3.77583	3.8454550000000003	3.91508	1.05659e-5	3.50367e-7	3.15727e-4	1.63119e-5
chr6	137206221	137206308	7988141	0	-	0.310345	(0.29,0.33]	chr6	610819	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000458076.5:ENST00000414770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.44697	3.84542	4.24387	0.00263476	0.00101442	0.0239118	0.0112862
chr11	121307056	121307145	12176655	0	+	0.41573	(0.39,0.42]	chr11	939026	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SC5D	ENSG00000109929.10	ENST00000264027.9:ENST00000534230.5:ENST00000527762.5:ENST00000392789.2:ENST00000528991.1:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	3.19588	3.8453649999999997	4.49485	0.00321212	1.93637e-6	0.0280721	6.9799e-5
chr12	120196698	120196772	13579728	0	-	0.324324	(0.29,0.33]	chr12	1068797	1	UTR3	UTR3:EXON_MRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000551217.1:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	147	2	3.27759	3.84488	4.41217	1.14075e-6	1.70065e-11	4.91686e-5	2.79871e-9
chr19	34296513	34296592	17542386	0	-	0.556962	(0.53,0.59]	chr19	1472132	4	EXON_PSEUDO	EXON_PSEUDO	RPL29P33	ENSG00000257074.3	ENST00000587474.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	41	2	2.56665	3.84483	5.12301	0.00209536	1.2852e-4	0.0196588	0.00241206
chrX	100155884	100155982	19147534	0	-	0.581633	(0.53,0.59]	chrX	1628114	1	EXON_PSEUDO	EXON_PSEUDO	RPSAP8	ENSG00000230592.2	ENST00000429844.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	41	2	2.56665	3.84483	5.12301	0.00209536	1.2852e-4	0.0196588	0.00241206
chr1	42747722	42747798	966432	0	-	0.486842	(0.455,0.49]	chr1	101712	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000462474.5:ENST00000431412.3:ENST00000460831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	3.32637	3.8447199999999997	4.36307	0.00218641	1.64563e-4	0.0208941	0.00269001
chr2	46904763	46904863	2629830	0	-	0.44	(0.42,0.455]	chr2	236786	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	3.46401	3.844625	4.22524	1.2079e-5	1.12126e-5	3.52389e-4	3.03388e-4
chr6	122458519	122458600	7923874	0	-	0.37037	(0.36,0.39]	chr6	606846	1	CDS	CDS:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.26414	3.8445849999999995	4.42503	0.00133228	4.42599e-5	0.0144372	9.29425e-4
chr1	160290058	160290156	1328667	0	-	0.530612	(0.53,0.59]	chr1	135960	16	UTR3	UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	251	2	3.71454	3.844465	3.97439	1.16069e-7	3.79538e-10	7.141e-6	4.4479e-8
chr12	98597947	98598047	13036938	0	+	0.39	(0.36,0.39]	chr12	1015006	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1:ENST00000547444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	112	2	3.74283	3.844415	3.946	1.50915e-5	3.02596e-9	4.23797e-4	2.75857e-7
chr16	369930	370024	15817080	0	-	0.606383	(0.59,1]	chr16	1260191	1	CDS	CDS:EXON_MRNA	MRPL28	ENSG00000086504.18	ENST00000648346.1:ENST00000199706.13:ENST00000483764.5:ENST00000481453.5:ENST00000461550.5:ENST00000469744.1:ENST00000389675.6:ENST00000441883.5:ENST00000447696.5:ENST00000450882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.04362	3.844385	5.64515	0.036186	1.07144e-4	0.145024	0.00206452
chr11	34966726	34966814	11907355	0	+	0.579545	(0.53,0.59]	chr11	909962	2	CDS	CDS:EXON_MRNA:INTRON	PDHX	ENSG00000110435.13	ENST00000448838.8:ENST00000227868.9:ENST00000430469.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.35511	3.84431	5.33351	0.0445399	4.35359e-5	0.172163	0.00091744700000000005
chr6	43675201	43675284	7708981	0	-	0.554217	(0.53,0.59]	chr6	591723	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS18A	ENSG00000096080.12	ENST00000372133.8:ENST00000372116.5:ENST00000427312.1	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.35511	3.84431	5.33351	0.0445399	4.35359e-5	0.172163	0.00091744700000000005
chr17	17817046	17817136	16465725	0	-	0.633333	(0.59,1]	chr17	1344711	2	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000471445.5:ENST00000469356.3:ENST00000580540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	102	2	3.79127	3.844285	3.8973	2.15122e-4	2.1425e-5	0.00360503	5.12077e-4
chr6	26027152	26027252	7646923	0	-	0.56	(0.53,0.59]	chr6	582484	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C2	ENSG00000278705.2	ENST00000377745.4	protein_coding	protein_coding	protein_coding	protein_coding	15	263	2	3.7619	3.8442749999999997	3.92665	2.79853e-8	5.86436e-10	1.8758e-6	7.19264e-8
chr15	82372580	82372663	15412048	0	-	0.46988	(0.455,0.49]	chr15	1218601	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL9P9	ENSG00000237550.5	ENST00000418824.3:ENST00000466501.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	13	172	2	3.38118	3.8440849999999998	4.30699	7.30492e-8	1.27152e-9	4.26751e-6	1.40745e-7
chr1	229304501	229304600	747035	0	+	0.424242	(0.42,0.455]	chr1	75889	8	UTR3	UTR3:EXON_MRNA	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.62856	3.84405	4.05954	0.00617886	4.02604e-4	0.0439741	0.00549837
chr17	62035462	62035535	16629161	0	-	0.424658	(0.42,0.455]	chr17	1366958	1	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.62856	3.84405	4.05954	0.00617886	4.02604e-4	0.0439741	0.00549837
chrX	120608291	120608358	18844421	0	+	0.447761	(0.42,0.455]	chrX	1605843	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCTS1	ENSG00000232119.8	ENST00000493274.5:ENST00000371317.10:ENST00000371315.3:ENST00000487133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.62856	3.84405	4.05954	0.00617886	4.02604e-4	0.0439741	0.00549837
chrX	134427307	134427406	18863551	0	+	0.333333	(0.33,0.36]	chrX	1607356	21	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	3.68275	3.843825	4.0049	2.69528e-5	1.77926e-6	6.88144e-4	6.4851e-5
chr2	65268634	65268734	1854375	0	+	0.43	(0.42,0.455]	chr2	175983	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	3.65978	3.84375	4.02772	4.30844e-5	2.09396e-5	0.00100091	5.04211e-4
chr12	7919725	7919824	13193160	0	-	0.444444	(0.42,0.455]	chr12	1033481	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000543435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	3.71365	3.84368	3.97371	2.63375e-4	6.07552e-5	0.00427022	0.00121305
chrX	26748317	26748414	18623785	0	+	0.597938	(0.59,1]	chrX	1590347	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	VENTXP1:HMGA1P1	ENSG00000259849.2:ENSG00000236683.3	ENST00000674719.1:ENST00000415560.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	1	38	2	2.5215	3.84363	5.16576	0.032241	6.55716e-4	0.135671	0.0080931
chr5	138557868	138557927	6862374	0	-	0.457627	(0.455,0.49]	chr5	525199	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000512328.1:ENST00000507115.6:ENST00000507097.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	3.77785	3.8432899999999997	3.90873	9.38535e-6	3.66904e-6	2.61344e-4	1.30734e-4
chr11	17228278	17228375	11826483	0	+	0.752577	(0.59,1]	chr11	905275	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	NUCB2:RP11-452G18.2	ENSG00000070081.17:ENSG00000197149.5	ENST00000528644.5:ENST00000494359.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	5	76	2	2.17589	3.8432049999999998	5.51052	0.00389949	0.00019737500000000001	0.0313218	0.00336487
chr19	54180802	54180884	17627729	0	-	0.756098	(0.59,1]	chr19	1488029	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2:ENST00000414665.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	120	2	3.38886	3.8431450000000003	4.29743	4.08624e-5	2.81132e-5	8.76602e-4	7.10133e-4
chr11	118503780	118503879	12158953	0	+	0.454545	(0.42,0.455]	chr11	937104	15	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.47379	3.84283	5.21187	0.00996858	5.5797e-5	0.0621728	0.00112719
chrX	68522838	68522917	18720586	0	+	0.443038	(0.42,0.455]	chrX	1597219	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.47379	3.84283	5.21187	0.00996858	5.5797e-5	0.0621728	0.00112719
chr6	63580661	63580759	7205080	0	+	0.336735	(0.33,0.36]	chr6	556541	6	UTR3	UTR3:EXON_MRNA	PTP4A1:RP5-1148A21.4	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	3.68275	3.842555	4.00236	2.69528e-5	2.45518e-8	6.88144e-4	1.68402e-6
chr4	82866883	82866960	5496926	0	-	0.480519	(0.455,0.49]	chr4	440271	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	71	2	3.40468	3.842375	4.28007	8.3464e-6	4.0666e-6	2.58924e-4	1.30689e-4
chr1	225922005	225922079	1531303	0	-	0.554054	(0.53,0.59]	chr1	153181	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RP4-559A3.7:PYCR2:MIR6741	ENSG00000255835.1:ENSG00000143811.19:ENSG00000284519.1	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000446534.1:ENST00000618782.1:ENST00000489681.5:ENST00000472798.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	26	2	3.02054	3.84201	4.66348	0.00577011	0.00107799	0.0426551	0.0118238
chr17	28635509	28635609	16486637	0	-	0.55	(0.53,0.59]	chr17	1348028	11	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.02054	3.84201	4.66348	0.00577011	0.00107799	0.0426551	0.0118238
chr22	20764816	20764883	18439113	0	-	0.537313	(0.53,0.59]	chr22	1571953	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.02054	3.84201	4.66348	0.00577011	0.00107799	0.0426551	0.0118238
chr5	177442510	177442608	6407654	0	+	0.571429	(0.53,0.59]	chr5	498275	8	UTR3	UTR3:EXON_MRNA	GRK6	ENSG00000198055.11	ENST00000355472.10:ENST00000393576.7:ENST00000528793.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.02054	3.84201	4.66348	0.00577011	0.00107799	0.0426551	0.0118238
chr6	31507114	31507207	7115392	0	+	0.580645	(0.53,0.59]	chr6	545671	2	CDS	CDS:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7:ENST00000494577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.02054	3.84201	4.66348	0.00577011	0.00107799	0.0426551	0.0118238
chr2	230877399	230877474	2422240	0	+	0.586667	(0.53,0.59]	chr2	218120	1	CDS	CDS:EXON_MRNA	ITM2C	ENSG00000135916.16	ENST00000326427.11:ENST00000335005.10:ENST00000326407.10:ENST00000409704.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	3.67993	3.8419300000000005	4.00393	0.0108084	3.22778e-4	0.064368	0.0046122
chr17	1651413	1651483	16401272	0	-	0.514286	(0.49,0.53]	chr17	1334833	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	3.68499	3.84166	3.99833	2.9991e-4	1.95792e-6	0.00472028	7.01677e-5
chr12	57821117	57821217	13358210	0	-	0.53	(0.49,0.53]	chr12	1053218	13	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.25514	3.84152	4.4279	0.00227467	0.00196987	0.0209546	0.0193972
chr8	18057147	18057243	9732802	0	-	0.5	(0.49,0.53]	chr8	736286	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.25514	3.84152	4.4279	0.00227467	0.00196987	0.0209546	0.0193972
chr2	65205596	65205694	1853946	0	+	0.469388	(0.455,0.49]	chr2	175914	6	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	157	2	3.1572	3.8410450000000003	4.52489	2.53088e-5	3.35142e-11	6.51851e-4	5.12379e-9
chr3	119432147	119432214	4399069	0	-	0.402985	(0.39,0.42]	chr3	364703	2	CDS	CDS:UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000473684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.82973	3.8409	3.85207	1.3728e-4	1.28587e-4	0.00241206	0.00232973
chr22	21763941	21764040	18442390	0	-	0.454545	(0.42,0.455]	chr22	1572508	44	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000491588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	168	2	3.34699	3.84079	4.33459	8.55119e-8	1.26344e-9	5.44879e-6	1.29328e-7
chr9	34226035	34226135	10238610	0	+	0.4	(0.39,0.42]	chr9	769867	47	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.56097	3.840785	4.1206	0.00597537	6.12149e-4	0.0428562	0.00818575
chr14	96566328	96566427	14476247	0	+	0.292929	(0.29,0.33]	chr14	1130890	14	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	3.4345	3.84077	4.24704	6.50817e-6	1.74107e-8	2.11907e-4	1.25424e-6
chr4	107614248	107614348	5583276	0	-	0.49	(0.455,0.49]	chr4	445610	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PAPSS1	ENSG00000138801.9	ENST00000514815.1:ENST00000265174.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.92099	3.8407350000000005	4.76048	0.00138399	3.99985e-4	0.0143168	0.00588767
chr8	47879490	47879574	9816585	0	-	0.47619	(0.455,0.49]	chr8	742723	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.92099	3.8407350000000005	4.76048	0.00138399	3.99985e-4	0.0143168	0.00588767
chr1	433346	433446	821962	0	-	0.56	(0.53,0.59]	chr1	81335	531	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr1	433446	433546	821963	0	-	0.59	(0.53,0.59]	chr1	81335	532	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr1	12115576	12115652	46582	0	+	0.565789	(0.53,0.59]	chr1	6030	1	CDS	CDS:UTR3:EXON_MRNA	TNFRSF8	ENSG00000120949.15	ENST00000263932.7:ENST00000417814.3:ENST00000514649.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr10	11886748	11886847	11369015	0	-	0.575758	(0.53,0.59]	chr10	866995	121	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr10	51698380	51698477	11490825	0	-	0.587629	(0.53,0.59]	chr10	876946	7	CDS	CDS:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr20	35284725	35284811	17952472	0	-	0.534884	(0.53,0.59]	chr20	1520681	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF6	ENSG00000242372.9	ENST00000447927.6:ENST00000374443.7:ENST00000374450.8:ENST00000415116.1:ENST00000456600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr3	45224935	45225029	4150470	0	-	0.56383	(0.53,0.59]	chr3	346803	6	UTR3	UTR3:EXON_MRNA	TMEM158	ENSG00000249992.2	ENST00000503771.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr5	141636547	141636630	6876296	0	-	0.53012	(0.53,0.59]	chr5	526583	1	CDS	CDS:EXON_MRNA	HDAC3	ENSG00000171720.10	ENST00000305264.8:ENST00000523088.5:ENST00000519474.5:ENST00000495485.1:ENST00000492506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr6	160073212	160073297	7528629	0	+	0.588235	(0.53,0.59]	chr6	574891	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr7	1439189	1439287	8645277	0	-	0.561224	(0.53,0.59]	chr7	660635	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000496184.1:ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000487156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr7	6023494	6023591	8112982	0	+	0.56701	(0.53,0.59]	chr7	620221	3	CDS	CDS:EXON_MRNA	AIMP2	ENSG00000106305.10	ENST00000400479.6:ENST00000223029.8:ENST00000395236.2	protein_coding	protein_coding	protein_coding	protein_coding	0	15	2	3.3733	3.8405300000000002	4.30776	0.0529193	0.00407289	0.18423900000000001	0.0324137
chr19	47745545	47745559	17363622	0	+	0.428571	(0.42,0.455]	chr19	1441385	1	UTR5	UTR5:EXON_MRNA	NOP53	ENSG00000105373.19	ENST00000246802.10:ENST00000594525.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	125	2	2.98357	3.840325	4.69708	3.24557e-5	2.94692e-10	7.95671e-4	3.55262e-8
chr16	58707980	58708075	15967623	0	-	0.431579	(0.42,0.455]	chr16	1281403	10	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.27707	3.839915	4.40276	0.00207325	0.0017618	0.0194849	0.0180053
chr2	157258472	157258568	2152108	0	+	0.5625	(0.53,0.59]	chr2	198573	4	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.0099	3.83963	4.66936	0.00600486	0.00103174	0.042887	0.0121443
chr3	12901252	12901337	4042334	0	-	0.717647	(0.59,1]	chr3	339378	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.96265	3.839625	5.7166	0.0238491	5.56053e-5	0.112466	0.0011271
chr9	35706500	35706551	10639549	0	-	0.509804	(0.49,0.53]	chr9	805023	2	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.13501	3.839455	5.5439	0.0287874	8.44877e-6	0.128869	2.39255e-4
chr10	3099946	3100041	10903494	0	+	0.473684	(0.455,0.49]	chr10	829686	2	INTRON	INTRON	PFKP	ENSG00000067057.18	ENST00000607886.5:ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr13	112885204	112885303	13904763	0	+	0.484848	(0.455,0.49]	chr13	1089770	33	UTR3	UTR3:EXON_MRNA	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr17	7176685	7176757	16428465	0	-	0.486111	(0.455,0.49]	chr17	1339089	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr17	15239411	15239485	16454811	0	-	0.486486	(0.455,0.49]	chr17	1343096	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PMP22	ENSG00000109099.16	ENST00000674673.1:ENST00000312280.9:ENST00000494511.7:ENST00000580584.3:ENST00000612492.5:ENST00000395938.7:ENST00000675854.1:ENST00000643451.2:ENST00000675819.1:ENST00000676329.1:ENST00000675551.1:ENST00000676221.1:ENST00000675950.1:ENST00000675808.1:ENST00000674871.1:ENST00000674651.1:ENST00000644020.1:ENST00000676161.1:ENST00000674707.1:ENST00000646419.2:ENST00000395936.7:ENST00000674947.1:ENST00000675197.1:ENST00000675350.1:ENST00000674868.1:ENST00000426385.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr2	30640116	30640196	1709536	0	+	0.4625	(0.455,0.49]	chr2	167659	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LCLAT1	ENSG00000172954.14	ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr2	111225142	111225242	2840631	0	-	0.47	(0.455,0.49]	chr2	253498	59	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000659806.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr20	57354038	57354128	17836602	0	+	0.477778	(0.455,0.49]	chr20	1508270	1	CDS_START	CDS_START:CDS:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000411894.5:ENST00000429339.5:ENST00000395840.6:ENST00000452119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr22	21968696	21968775	18443934	0	-	0.455696	(0.455,0.49]	chr22	1572681	2	CDS	CDS:UTR3:EXON_MRNA	TOP3B	ENSG00000100038.20	ENST00000357179.10:ENST00000457179.5:ENST00000457270.5:ENST00000444502.5:ENST00000398793.6:ENST00000424393.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr22	42083118	42083215	18385058	0	+	0.484536	(0.455,0.49]	chr22	1565299	1	UTR3	UTR3:EXON_MRNA	SMDT1	ENSG00000183172.9	ENST00000422252.1:ENST00000331479.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr3	40532891	40532990	3430221	0	+	0.484848	(0.455,0.49]	chr3	298443	8	CDS	CDS:EXON_MRNA:INTRON	ZNF621	ENSG00000172888.12	ENST00000310898.5:ENST00000403205.6:ENST00000431278.5:ENST00000339296.10:ENST00000490457.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.47671	3.8392999999999997	4.20189	0.0368644	0.00397662	0.145024	0.0322851
chr7	100632139	100632198	8952287	0	-	0.576271	(0.53,0.59]	chr7	684197	2	CDS	CDS:EXON_MRNA:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	3.11992	3.8392600000000003	4.5586	0.00161229	1.09102e-4	0.0169168	0.00194222
chr17	22204474	22204571	16168816	0	+	0.525773	(0.49,0.53]	chr17	1304328	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	71	2	3.57669	3.839055	4.10142	3.59064e-5	8.9797e-7	8.71318e-4	3.64922e-5
chr9	120816149	120816247	10833850	0	-	0.377551	(0.36,0.39]	chr9	820467	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	3.11463	3.83904	4.56345	1.14911e-4	1.14615e-6	0.00203731	4.93609e-5
chr11	64317263	64317314	12417466	0	-	0.568627	(0.53,0.59]	chr11	962530	1	CDS	CDS:EXON_MRNA	TRMT112	ENSG00000173113.7	ENST00000544844.6:ENST00000535750.5:ENST00000535126.1:ENST00000537918.1:ENST00000308774.6:ENST00000539854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	2.47886	3.838845	5.19883	0.00138105	8.7034e-5	0.014307	0.00177086
chr21	23390441	23390534	18074525	0	+	0.462366	(0.455,0.49]	chr21	1532748	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P1	ENSG00000223822.2	ENST00000447052.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	2.30139	3.8387399999999996	5.37609	0.0530131	2.05373e-5	0.195536	4.97369e-4
chr1	205620473	205620564	1461629	0	-	0.417582	(0.39,0.42]	chr1	147411	7	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.88836	3.83857	4.78878	0.0102432	4.27222e-4	0.062872	0.00577513
chr12	19456711	19456805	13233334	0	-	0.414894	(0.39,0.42]	chr12	1037586	6	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P4	ENSG00000245205.3	ENST00000359165.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	2.88836	3.83857	4.78878	0.0102432	4.27222e-4	0.062872	0.00577513
chr13	98022415	98022514	13859289	0	+	0.393939	(0.39,0.42]	chr13	1086746	7	UTR3	UTR3:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.88836	3.83857	4.78878	0.0102432	4.27222e-4	0.062872	0.00577513
chr10	16592896	16592995	11391726	0	-	0.262626	[0,0.29]	chr10	868459	24	UTR3	UTR3:EXON_MRNA	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.82443	3.8385499999999997	4.85267	0.0180803	2.14908e-4	0.0920398	0.00332687
chr5	62388813	62388911	6611631	0	-	0.255102	[0,0.29]	chr5	511030	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000514605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.82443	3.8385499999999997	4.85267	0.0180803	2.14908e-4	0.0920398	0.00332687
chr2	9585096	9585190	2508165	0	-	0.393617	(0.39,0.42]	chr2	226349	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	172	2	3.1217	3.838405	4.55511	2.89639e-7	8.02888e-11	1.38881e-5	1.22948e-8
chr17	78161054	78161154	16367624	0	+	0.54	(0.53,0.59]	chr17	1329535	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C17orf99	ENSG00000187997.11	ENST00000340363.9:ENST00000586999.2:ENST00000591995.1:ENST00000451352.3:ENST00000586029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.11779	3.838195	4.5586	0.00161229	5.11883e-4	0.0169168	0.00664583
chr1	183626837	183626936	1404926	0	-	0.383838	(0.36,0.39]	chr1	142115	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.94286	3.8381600000000002	4.73346	0.00128446	3.2963e-4	0.0136229	0.00504024
chr19	47203670	47203738	17360825	0	+	0.544118	(0.53,0.59]	chr19	1440986	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.63316	3.83807	5.04298	0.00474401	1.91383e-4	0.0361423	0.0032874
chr2	197402645	197402735	3106414	0	-	0.488889	(0.455,0.49]	chr2	274548	2	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.65545	3.8379250000000003	4.0204	0.00736097	3.50134e-4	0.0490627	0.0049086
chr3	12899095	12899193	4042311	0	-	0.479592	(0.455,0.49]	chr3	339374	22	UTR3	UTR3:EXON_MRNA	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.65545	3.8379250000000003	4.0204	0.00736097	3.50134e-4	0.0490627	0.0049086
chrX	65729620	65729712	18716254	0	+	0.532609	(0.53,0.59]	chrX	1596835	3	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	2.95437	3.837635	4.7209	2.85501e-4	6.47717e-9	0.00456926	5.30089e-7
chr17	35650529	35650602	16206753	0	+	0.479452	(0.455,0.49]	chr17	1309083	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.52734	3.8375399999999997	5.14774	0.00792433	7.45457e-5	0.0523592	0.00142165
chr2	187466065	187466161	3070160	0	-	0.239583	[0,0.29]	chr2	271827	20	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.50979	3.837185	5.16458	0.00608277	3.97867e-5	0.0438976	8.56316e-4
chr21	43695180	43695280	18135746	0	+	0.29	[0,0.29]	chr21	1538248	19	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.50979	3.837185	5.16458	0.00608277	3.97867e-5	0.0438976	8.56316e-4
chr6	109366513	109366611	7886644	0	-	0.244898	[0,0.29]	chr6	603688	1	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	80	2	3.14012	3.8369299999999997	4.53374	7.60471e-5	1.02757e-9	0.00159608	1.074e-7
chr1	21829382	21829456	890674	0	-	0.662162	(0.59,1]	chr1	92236	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	224	2	2.57804	3.8368900000000004	5.09574	5.94142e-4	4.88225e-9	0.00746087	4.52025e-7
chr9	94459795	94459891	10367794	0	+	0.4375	(0.42,0.455]	chr9	780591	5	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	3.52659	3.8368200000000003	4.14705	6.87022e-4	2.1071e-5	0.00876781	5.06044e-4
chr9	34196868	34196967	10238314	0	+	0.353535	(0.33,0.36]	chr9	769857	51	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.15976	3.8367699999999996	4.51378	0.00437542	0.00118147	0.0340502	0.0127276
chr17	43044590	43044689	16550756	0	-	0.282828	[0,0.29]	chr17	1358034	4	UTR3	UTR3:EXON_MRNA	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.0735	3.836545	4.59959	0.00785095	7.13769e-4	0.0520241	0.0085671400000000009
chr1	1661477	1661574	828541	0	-	0.391753	(0.39,0.42]	chr1	82665	1	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr1	25831926	25832026	107454	0	+	0.41	(0.39,0.42]	chr1	12577	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MTFR1L	ENSG00000117640.18	ENST00000474295.5:ENST00000374303.7:ENST00000469815.5:ENST00000524618.5:ENST00000374307.9:ENST00000374301.7:ENST00000374300.7:ENST00000466284.1:ENST00000497956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr10	11461640	11461740	11367114	0	-	0.41	(0.39,0.42]	chr10	866869	78	UTR3	UTR3:EXON_MRNA	USP6NL	ENSG00000148429.14	ENST00000609104.5:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr13	52024488	52024585	13746360	0	+	0.391753	(0.39,0.42]	chr13	1082765	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ALG11	ENSG00000253710.5	ENST00000649708.2:ENST00000521508.2:ENST00000681053.1:ENST00000681047.1:ENST00000679544.1:ENST00000649340.2:ENST00000680793.1:ENST00000523764.1:ENST00000680950.1:ENST00000679359.1:ENST00000681226.1:ENST00000681145.1:ENST00000650049.2:ENST00000679495.1:ENST00000649651.2:ENST00000519151.1:ENST00000680058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr15	42218322	42218378	15238904	0	-	0.410714	(0.39,0.42]	chr15	1200172	1	CDS	CDS:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr16	14584346	14584422	15862565	0	-	0.407895	(0.39,0.42]	chr16	1267294	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000563697.5:ENST00000562715.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr2	61188370	61188455	2687378	0	-	0.411765	(0.39,0.42]	chr2	239902	3	CDS	CDS:EXON_MRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr2	218277003	218277025	3186662	0	-	0.409091	(0.39,0.42]	chr2	279910	1	CDS	CDS:UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr3	154288865	154288964	4531428	0	-	0.414141	(0.39,0.42]	chr3	375595	1	CDS	CDS:EXON_MRNA:INTRON	DHX36	ENSG00000174953.14	ENST00000496811.6:ENST00000308361.10:ENST00000329463.9:ENST00000481941.5:ENST00000469977.1:ENST00000481332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr4	1393804	1393903	4680769	0	+	0.40404	(0.39,0.42]	chr4	387913	80	UTR3	UTR3:EXON_MRNA	UVSSA	ENSG00000163945.19	ENST00000511216.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr4	105235041	105235141	5025998	0	+	0.41	(0.39,0.42]	chr4	409079	11	CDS	CDS:EXON_MRNA	TET2	ENSG00000168769.14	ENST00000305737.6:ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9:ENST00000413648.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr5	138511382	138511474	6861993	0	-	0.413043	(0.39,0.42]	chr5	525132	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr9	89325448	89325548	10349818	0	+	0.41	(0.39,0.42]	chr9	779021	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SECISBP2	ENSG00000187742.15	ENST00000375807.8:ENST00000339901.8:ENST00000534113.6:ENST00000470305.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chrX	47150089	47150189	18686245	0	+	0.41	(0.39,0.42]	chrX	1593062	22	INTRON	INTRON	RBM10	ENSG00000182872.16	ENST00000377604.8:ENST00000628161.2:ENST00000345781.10:ENST00000329236.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.73294	3.83645	3.93996	0.0190864	0.00841622	0.0958835	0.054565
chr22	31621648	31621727	18473646	0	-	0.658228	(0.59,1]	chr22	1576738	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PISD:MIR7109	ENSG00000241878.11:ENSG00000284082.1	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000613748.1:ENST00000422020.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	37	2	2.84944	3.8363449999999997	4.82325	0.0128238	0.002381	0.0719798	0.0216895
chr9	33135188	33135266	10631809	0	-	0.487179	(0.455,0.49]	chr9	803460	1	CDS	CDS:EXON_MRNA	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.24913	3.83631	4.42349	0.00239443	3.27827e-6	0.0225356	1.08637e-4
chr1	168247730	168247830	526546	0	+	0.42	(0.39,0.42]	chr1	56538	53	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.37759	3.8363050000000003	5.29502	0.0428865	1.68146e-5	0.161091	4.64895e-4
chr20	45004400	45004454	17800088	0	+	0.37037	(0.36,0.39]	chr20	1504875	2	EXON_SMALL	EXON_SMALL:INTRON	STK4:Y_RNA	ENSG00000101109.12:ENSG00000252021.1	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5:ENST00000516212.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	1	21	2	3.77302	3.8361	3.89918	0.0162599	1.0624e-4	0.0866586	0.00205241
chr3	13316234	13316330	4046183	0	-	0.322917	(0.29,0.33]	chr3	339510	1	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.45373	3.836045	5.21836	0.0156405	3.15783e-5	0.084273700000000007	7.02218e-4
chr13	72706069	72706123	14070852	0	-	0.388889	(0.36,0.39]	chr13	1101983	2	EXON_SMALL	EXON_SMALL	RNU6-80P	ENSG00000206922.1	ENST00000384195.1	snRNA	snRNA	snRNA	snRNA	1	23	2	2.38564	3.835745	5.28585	0.0476159	2.81625e-5	0.17993	6.42183e-4
chr7	44803017	44803117	8261684	0	+	0.39	(0.36,0.39]	chr7	629477	17	UTR3	UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.38564	3.835745	5.28585	0.0476159	2.81625e-5	0.17993	6.42183e-4
chr9	5095111	5095208	10167552	0	+	0.381443	(0.36,0.39]	chr9	765716	2	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.84089	3.835705	4.83052	0.0128123	3.15227e-4	0.0719798	0.00452711
chr13	29535818	29535908	13945447	0	-	0.544444	(0.53,0.59]	chr13	1094608	1	CDS	CDS:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.89916	3.83569	4.77222	0.00890406	6.67251e-4	0.0565003	0.00867533
chr7	16685955	16686040	8148982	0	+	0.576471	(0.53,0.59]	chr7	622138	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.89916	3.83569	4.77222	0.00890406	6.67251e-4	0.0565003	0.00867533
chr19	41860674	41860774	17336787	0	+	0.58	(0.53,0.59]	chr19	1437255	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000598466.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.11275	3.835675	4.5586	0.00407571	0.00161229	0.032143	0.0169168
chr19	49430424	49430518	17606397	0	-	0.553191	(0.53,0.59]	chr19	1483928	12	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.11275	3.835675	4.5586	0.00407571	0.00161229	0.032143	0.0169168
chr5	54065663	54065763	6577719	0	-	0.26	[0,0.29]	chr5	509097	175	INTRON	INTRON	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	2.60325	3.835585	5.06792	8.91181e-4	6.88295e-5	0.010856	0.00133223
chr9	35065246	35065314	10638166	0	-	0.514706	(0.49,0.53]	chr9	804550	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000680520.1:ENST00000681789.1:ENST00000680731.1:ENST00000681562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	75	2	3.29825	3.8354749999999997	4.3727	0.00019429700000000001	1.01998e-7	0.00332542	5.67095e-6
chr5	138567454	138567553	6862479	0	-	0.474747	(0.455,0.49]	chr5	525226	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	3.38878	3.8352399999999998	4.2817	4.61306e-6	2.07199e-7	1.60084e-4	1.04734e-5
chr15	78545698	78545764	15040560	0	+	0.469697	(0.455,0.49]	chr15	1183222	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559154.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	63	2	3.63686	3.8351749999999996	4.03349	4.13044e-5	3.17276e-6	9.71332e-4	1.05915e-4
chr14	96853105	96853166	14477713	0	+	0.42623	(0.42,0.455]	chr14	1131012	1	CDS	CDS:UTR3:EXON_MRNA	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	3.79103	3.835125	3.87922	1.04705e-4	8.61353e-6	0.0020295	2.43348e-4
chr1	207336692	207336775	686418	0	+	0.421687	(0.42,0.455]	chr1	69502	1	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	217	2	3.7355	3.835075	3.93465	1.29688e-5	6.49153e-11	3.73168e-4	9.26289e-9
chr7	30601319	30601414	8203556	0	+	0.326316	(0.29,0.33]	chr7	625786	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.21455	3.834945	4.45534	0.00283988	0.00110984	0.0245061	0.0127344
chr8	70111163	70111261	9878092	0	-	0.326531	(0.29,0.33]	chr8	746742	15	UTR3	UTR3:EXON_MRNA	NCOA2	ENSG00000140396.13	ENST00000452400.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.21455	3.834945	4.45534	0.00283988	0.00110984	0.0245061	0.0127344
chr8	73981429	73981521	9406607	0	+	0.315217	(0.29,0.33]	chr8	718134	4	CDS	CDS:UTR3:EXON_MRNA	TMEM70	ENSG00000175606.11	ENST00000312184.6:ENST00000416961.6:ENST00000519551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.21455	3.834945	4.45534	0.00283988	0.00110984	0.0245061	0.0127344
chr19	45698800	45698900	17354392	0	+	0.58	(0.53,0.59]	chr19	1440115	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	QPCTL	ENSG00000011478.13	ENST00000678102.1:ENST00000677542.1:ENST00000677024.1:ENST00000012049.10:ENST00000678862.1:ENST00000366382.8:ENST00000591606.1:ENST00000592769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.62668	3.83483	5.04298	0.00157636	1.91383e-4	0.015761	0.0032874
chr20	1135213	1135306	17645332	0	+	0.677419	(0.59,1]	chr20	1491515	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000381899.8:ENST00000479715.5:ENST00000246015.8:ENST00000335877.11:ENST00000478004.1:ENST00000484891.1:ENST00000435720.5:ENST00000381898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	3.1277	3.834765	4.54183	0.0070583	0.00490589	0.0478044	0.0366648
chr6	116258581	116258670	7908783	0	-	0.58427	(0.53,0.59]	chr6	605646	2	EXON_PSEUDO	EXON_PSEUDO	RP3-486I3.4	ENSG00000233558.1	ENST00000435100.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	37	2	3.2308500000000002	3.83474	4.43863	0.00254763	2.81517e-4	0.0233955	0.00415519
chr15	41303436	41303536	14885455	0	+	0.31	(0.29,0.33]	chr15	1169280	55	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	22	2	2.63813	3.8346850000000003	5.03124	0.00803229	9.06368e-5	0.0528968	0.00167558
chr15	66503529	66503629	15353025	0	-	0.31	(0.29,0.33]	chr15	1212583	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5:ENST00000566491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.63813	3.8346850000000003	5.03124	0.00803229	9.06368e-5	0.0528968	0.00167558
chr1	28200568	28200665	912947	0	-	0.402062	(0.39,0.42]	chr1	95445	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	3.3592	3.834675	4.31015	2.70719e-5	1.60779e-7	6.90257e-4	8.42615e-6
chr3	179604815	179604915	3928709	0	+	0.64	(0.59,1]	chr3	330224	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000477177.1:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	102	2	3.05115	3.8345599999999997	4.61797	0.00103208	3.73949e-6	0.0121443	1.21565e-4
chr5	163443673	163443703	6343427	0	+	0.333333	(0.33,0.36]	chr5	494013	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	84	2	3.71529	3.8344750000000003	3.95366	3.77669e-6	8.339e-8	1.34044e-4	4.7764e-6
chr9	5825091	5825187	10542957	0	-	0.427083	(0.42,0.455]	chr9	799434	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5:ENST00000475005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.42938	3.834355	5.23933	0.0045028	4.91685e-9	0.0349711	4.17881e-7
chr16	2253407	2253505	15825199	0	-	0.571429	(0.53,0.59]	chr16	1262340	4	UTR3	UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	3.69065	3.83428	3.97791	3.04331e-4	2.51849e-6	0.00472028	8.73415e-5
chr16	84775159	84775225	15790996	0	+	0.409091	(0.39,0.42]	chr16	1256721	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.13132	3.834225	5.53713	0.02908	3.48373e-6	0.127648	1.26023e-4
chr22	39018583	39018681	18368449	0	+	0.591837	(0.59,1]	chr22	1562849	3	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	152	2	3.102	3.8342	4.5664	3.25562e-5	6.21388e-6	7.20475e-4	2.03021e-4
chr7	130130845	130130944	8529033	0	+	0.373737	(0.36,0.39]	chr7	651128	2	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.11101	3.83408	5.55715	0.00480242	2.50226e-6	0.0365653	9.53193e-5
chr20	5119878	5119958	17887838	0	-	0.5875	(0.53,0.59]	chr20	1514099	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.80515	3.833735	4.86232	6.42453e-4	4.57805e-4	0.00850441	0.00608573
chr7	76330140	76330233	8863417	0	-	0.55914	(0.53,0.59]	chr7	677478	6	CDS	CDS:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.80515	3.833735	4.86232	6.42453e-4	4.57805e-4	0.00850441	0.00608573
chr7	6436447	6436533	8664405	0	-	0.511628	(0.49,0.53]	chr7	662802	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DAGLB	ENSG00000164535.15	ENST00000297056.11:ENST00000425398.6:ENST00000436575.5:ENST00000454738.5:ENST00000432248.1:ENST00000479922.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.42954	3.833565	4.23759	0.00436474	0.00105489	0.0335517	0.0123035
chr11	35189834	35189911	11908419	0	+	0.480519	(0.455,0.49]	chr11	910029	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CD44	ENSG00000026508.20	ENST00000415148.6:ENST00000263398.11:ENST00000428726.8:ENST00000528086.5:ENST00000425428.6:ENST00000526669.6:ENST00000433892.6:ENST00000525211.6:ENST00000278386.10:ENST00000434472.6:ENST00000352818.8:ENST00000442151.6:ENST00000526000.6:ENST00000279452.10:ENST00000527889.6:ENST00000531118.5:ENST00000528455.5:ENST00000531873.5:ENST00000525209.5:ENST00000639002.1:ENST00000531110.6:ENST00000525685.6:ENST00000534296.5:ENST00000525688.5:ENST00000278385.10:ENST00000533222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	3.30384	3.833455	4.36307	0.00218641	0.00184955	0.0208941	0.0178046
chr22	17600026	17600095	18423841	0	-	0.478261	(0.455,0.49]	chr22	1569478	1	CDS	CDS:EXON_MRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.30384	3.833455	4.36307	0.00218641	0.00184955	0.0208941	0.0178046
chr1	110899123	110899195	405634	0	+	0.513889	(0.49,0.53]	chr1	39841	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1:ENST00000464329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	111	2	3.5287	3.8334349999999997	4.13817	1.54299e-6	5.61303e-8	6.34179e-5	3.39862e-6
chr12	119681024	119681124	13114522	0	+	0.49	(0.455,0.49]	chr12	1023559	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	55	2	3.65079	3.83319	4.01559	3.61776e-4	1.68211e-6	0.00544764	6.18007e-5
chr3	128070239	128070335	3725193	0	+	0.510417	(0.49,0.53]	chr3	318515	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.72252	3.833075	4.94363	0.0161474	2.3417e-4	0.0860154	0.00355764
chr17	43044392	43044491	16550754	0	-	0.40404	(0.39,0.42]	chr17	1358034	2	UTR3	UTR3:EXON_MRNA	BRCA1	ENSG00000012048.23	ENST00000471181.7:ENST00000352993.7:ENST00000357654.9	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.55844	3.833025	5.10761	0.0263695	5.12039e-5	0.117164	0.00114668
chr11	75404363	75404420	12023095	0	+	0.45614	(0.455,0.49]	chr11	926987	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	3.56037	3.8328599999999997	4.10535	0.0064531	5.72551e-4	0.0450905	0.0078026
chr8	140528946	140529046	10132132	0	-	0.34	(0.33,0.36]	chr8	760954	89	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.78785	3.83275	4.87765	0.00115378	2.2423e-4	0.0130851	0.00344776
chr10	46798268	46798368	11030065	0	+	0.39	(0.36,0.39]	chr10	839799	1	SS5_PROX	SS5_PROX:INTRON	BMS1P1	ENSG00000204177.10	ENST00000580094.5:ENST00000374336.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	25	2	2.63521	3.832705	5.0302	0.00633242	1.15931e-4	0.0446708	0.00204552
chr11	108482149	108482222	12588888	0	-	0.39726	(0.39,0.42]	chr11	976283	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	POGLUT3	ENSG00000178202.13	ENST00000434945.6:ENST00000323468.10:ENST00000530529.5:ENST00000532730.1:ENST00000524787.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.51636	3.83261	4.14886	0.00415881	6.99837e-4	0.0325842	0.00846751
chrX	134413894	134413966	18863411	0	+	0.402778	(0.39,0.42]	chrX	1607335	2	CDS	CDS:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.51636	3.83261	4.14886	0.00415881	6.99837e-4	0.0325842	0.00846751
chr7	107951225	107951322	8987498	0	-	0.659794	(0.59,1]	chr7	687619	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	37	2	2.69477	3.83246	4.97015	0.020208	0.00140057	0.0978331	0.0144327
chr2	187466548	187466645	3070165	0	-	0.360825	(0.36,0.39]	chr2	271827	25	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.93136	3.8324100000000003	4.73346	0.00811967	3.2963e-4	0.0528637	0.00504024
chr8	116658896	116658980	10034051	0	-	0.452381	(0.42,0.455]	chr8	755349	2	CDS	CDS:UTR3:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	122	2	3.31554	3.832375	4.34921	1.04766e-6	6.60592e-9	4.16187e-5	5.93206e-7
chr12	56640121	56640192	13352129	0	-	0.521127	(0.49,0.53]	chr12	1051745	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000550162.1:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	341	2	3.72937	3.8319	3.93443	1.3298e-9	4.578e-11	1.46343e-7	6.79363e-9
chr10	74122722	74122821	11575821	0	-	0.333333	(0.33,0.36]	chr10	881667	26	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.45014	3.831875	4.21361	8.23333e-5	1.64389e-5	0.00155613	4.56784e-4
chr7	129000497	129000567	9060637	0	-	0.314286	(0.29,0.33]	chr7	691845	2	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.76009	3.8316600000000003	3.90323	3.08518e-4	9.15815e-5	0.00476847	0.00168607
chr19	22368686	22368775	17514485	0	-	0.404494	(0.39,0.42]	chr19	1470092	2	EXON_PSEUDO	EXON_PSEUDO	RPL34P34	ENSG00000236312.3	ENST00000465389.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.34349	3.83159	5.31969	0.0169272	2.68682e-5	0.0890655	6.19143e-4
chr6	131726122	131726200	7403579	0	+	0.474359	(0.455,0.49]	chr6	567460	2	CDS	CDS:EXON_MRNA	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.69053	3.831555	4.97258	0.0182983	1.84876e-4	0.0925808	0.00296795
chr6	159797286	159797363	7527025	0	+	0.480519	(0.455,0.49]	chr6	574568	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL18	ENSG00000112110.10	ENST00000476826.5:ENST00000479638.5:ENST00000367034.5:ENST00000480842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.69053	3.831555	4.97258	0.0182983	1.84876e-4	0.0925808	0.00296795
chr3	40309941	40309972	3429091	0	+	0.451613	(0.42,0.455]	chr3	298211	1	CDS_START	CDS_START:CDS:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	3.71365	3.83147	3.94929	2.63375e-4	2.78395e-6	0.00427022	9.49154e-5
chr1	183635559	183635659	1405018	0	-	0.57	(0.53,0.59]	chr1	142131	1	CDS_START	CDS_START:CDS:EXON_MRNA	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.8006	3.8314600000000003	4.86232	0.00233666	4.57805e-4	0.0221314	0.00608573
chr15	67521430	67521512	14990281	0	+	0.658537	(0.59,1]	chr15	1178355	2	CDS	CDS:EXON_MRNA	C15orf61	ENSG00000189227.6	ENST00000342683.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.32455	3.8312749999999998	5.338	0.0520547	3.196e-4	0.193787	0.00457916
chr2	73946746	73946846	1889866	0	+	0.52	(0.49,0.53]	chr2	179019	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	3.02891	3.8311450000000002	4.63338	9.56909e-4	8.23332e-4	0.010724	0.0102121
chr5	72887145	72887222	6029158	0	+	0.324675	(0.29,0.33]	chr5	472743	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	3.02243	3.831085	4.63974	9.33835e-4	4.81181e-4	0.0105624	0.00677016
chr4	82842310	82842395	5496661	0	-	0.517647	(0.49,0.53]	chr4	440195	3	CDS	CDS:EXON_MRNA:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	168	2	3.82017	3.8310500000000003	3.84193	1.13127e-7	4.98208e-9	6.97642e-6	4.22807e-7
chr17	5439073	5439155	16421576	0	-	0.682927	(0.59,1]	chr17	1338200	1	UTR5	UTR5:EXON_MRNA:INTRON	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000570805.1:ENST00000573406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	2.19905	3.830875	5.4627	0.0105866	2.43542e-4	0.0644466	0.00399705
chr22	49526995	49527095	18543134	0	-	0.53	(0.49,0.53]	chr22	1583944	854	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	2.38683	3.8308	5.27477	0.012654	4.14521e-5	0.0718207	8.8376e-4
chr1	234606938	234607037	1558273	0	-	0.252525	[0,0.29]	chr1	155933	28	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.47088	3.8307700000000002	4.19066	0.0015572	4.16596e-7	0.0165415	1.89224e-5
chr9	92539456	92539556	10357526	0	+	0.39	(0.36,0.39]	chr9	779569	1592	INTRON	INTRON	CENPP	ENSG00000188312.14	ENST00000375587.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.63115	3.830675	5.0302	0.0245975	1.15931e-4	0.114841	0.00204552
chr10	68645658	68645754	11090651	0	+	0.322917	(0.29,0.33]	chr10	842885	11	CDS	CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.99403	3.83061	5.66719	0.0202925	1.7577e-6	0.098158	6.42329e-5
chr15	78546574	78546636	15040571	0	+	0.403226	(0.39,0.42]	chr15	1183228	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559154.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.67296	3.830605	4.98825	0.00159022	1.62756e-4	0.0168452	0.00266622
chr2	152759840	152759938	2139521	0	+	0.397959	(0.39,0.42]	chr2	198151	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000455875.5:ENST00000425034.5:ENST00000463690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	3.3298	3.8305499999999997	4.3313	0.00209984	0.00165391	0.0204266	0.0163614
chr9	37088750	37088849	10252817	0	+	0.343434	(0.33,0.36]	chr9	771576	39	EXON_LNCRNA	EXON_LNCRNA	EBLN3P	ENSG00000281649.2	ENST00000660341.1:ENST00000625445.1:ENST00000664382.1:ENST00000658888.1:ENST00000654889.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	3.32157	3.830265	4.33896	0.00182033	1.77615e-4	0.0183913	0.00287736
chr19	38376419	38376454	17320694	0	+	0.4	(0.39,0.42]	chr19	1433560	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000591250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.49701	3.83024	5.16347	0.0339607	6.48089e-5	0.141431	0.00126536
chr3	96350048	96350147	3612088	0	+	0.393939	(0.39,0.42]	chr3	310547	6	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	2.49701	3.83024	5.16347	0.0339607	6.48089e-5	0.141431	0.00126536
chr15	34084333	34084433	15202778	0	-	0.46	(0.455,0.49]	chr15	1196583	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.89975	3.830115	4.76048	3.99985e-4	3.94125e-4	0.00588767	0.00541075
chr15	50735503	50735600	15277071	0	-	0.350515	(0.33,0.36]	chr15	1205334	25	INTRON	INTRON	SPPL2A	ENSG00000138600.10	ENST00000261854.10:ENST00000558934.1:ENST00000559527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.13748	3.83007	4.52266	0.00379835	8.34989e-4	0.0307587	0.0102956
chrX	49561996	49562080	18694985	0	+	0.511905	(0.49,0.53]	chrX	1594969	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE12F	ENSG00000236362.8	ENST00000639028.1:ENST00000440137.1	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	3.66756	3.8300650000000003	3.99257	4.99755e-7	1.93793e-7	2.473e-5	9.9078e-6
chr17	42841776	42841875	16230329	0	+	0.444444	(0.42,0.455]	chr17	1313600	3	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.70451	3.829945	3.95538	2.72131e-4	6.68846e-5	0.00404713	0.00142352
chr17	32493201	32493299	16499654	0	-	0.5	(0.49,0.53]	chr17	1350073	8	UTR3	UTR3:EXON_MRNA	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.41364	3.829715	5.24579	0.0112538	4.073e-5	0.0665375	9.64741e-4
chr19	7967639	7967714	17447988	0	-	0.52	(0.49,0.53]	chr19	1458197	2	CDS	CDS:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.42954	3.8297	4.22986	0.00105489	1.25249e-5	0.0123035	3.30689e-4
chrX	119243254	119243347	18840471	0	+	0.27957	[0,0.29]	chrX	1605479	1	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.40395	3.82956	5.25517	0.0210081	2.33041e-5	0.101116	5.51886e-4
chr15	64682586	64682685	14978099	0	+	0.515152	(0.49,0.53]	chr15	1177327	10	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.8681	3.82948	4.79086	0.00175299	4.20783e-4	0.0171299	0.00611538
chr1	19257063	19257145	85453	0	+	0.487805	(0.455,0.49]	chr1	9628	1	CDS	CDS:EXON_MRNA	MRTO4	ENSG00000053372.5	ENST00000330263.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.9967	3.8293999999999997	4.6621	0.00650423	7.84472e-4	0.0454205	0.00927662
chr11	31632310	31632405	11893172	0	+	0.484211	(0.455,0.49]	chr11	908614	2	CDS	CDS:UTR3:EXON_MRNA	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000638482.1:ENST00000640533.1:ENST00000639570.1:ENST00000640081.1:ENST00000640342.1:ENST00000474374.5:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000640921.1:ENST00000638376.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.9967	3.8293999999999997	4.6621	0.00650423	7.84472e-4	0.0454205	0.00927662
chr20	38012184	38012279	17962670	0	-	0.484211	(0.455,0.49]	chr20	1522288	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1:ENST00000487362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.9967	3.8293999999999997	4.6621	0.00650423	7.84472e-4	0.0454205	0.00927662
chr9	129818744	129818832	10867714	0	-	0.477273	(0.455,0.49]	chr9	824278	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1A	ENSG00000136827.12	ENST00000351698.5:ENST00000651202.1:ENST00000474192.1:ENST00000473604.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.9967	3.8293999999999997	4.6621	0.00650423	7.84472e-4	0.0454205	0.00927662
chr8	125021752	125021845	9595592	0	+	0.376344	(0.36,0.39]	chr8	727947	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10	protein_coding	protein_coding	protein_coding	protein_coding	11	134	2	3.6826	3.82903	3.97546	2.39363e-7	6.93152e-9	1.32863e-5	5.64756e-7
chr6	26217367	26217425	7101608	0	+	0.431034	(0.42,0.455]	chr6	542862	1	UTR3	UTR3:EXON_MRNA	H2AC8	ENSG00000277075.2	ENST00000303910.4	protein_coding	protein_coding	protein_coding	protein_coding	8	118	2	3.81811	3.8290100000000002	3.83991	7.6394e-7	3.08213e-8	3.52166e-5	2.04741e-6
chr21	37424118	37424215	18116499	0	+	0.453608	(0.42,0.455]	chr21	1536220	19	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.22933	3.82901	5.42869	0.0102262	1.60756e-5	0.062872	4.07445e-4
chr8	61203123	61203220	9357855	0	+	0.463918	(0.455,0.49]	chr8	715606	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	CLVS1:NPM1P6	ENSG00000177182.11:ENSG00000213881.3	ENST00000522621.1:ENST00000521088.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	4	60	2	2.89975	3.828895	4.75804	3.94125e-4	2.37841e-7	0.00541075	1.32405e-5
chrX	48458932	48459032	19062730	0	-	0.57	(0.53,0.59]	chrX	1620375	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000615300.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	109	2	3.10062	3.82886	4.5571	3.70432e-5	2.67045e-8	8.91807e-4	1.80483e-6
chr7	12389280	12389358	8683577	0	-	0.525641	(0.49,0.53]	chr7	664065	3	CDS	CDS:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	3.28292	3.828575	4.37423	3.85662e-5	4.77238e-6	9.23895e-4	1.49327e-4
chr17	66805023	66805121	16326768	0	+	0.438776	(0.42,0.455]	chr17	1324591	11	UTR3	UTR3:EXON_MRNA	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.62315	3.82849	4.03383	4.234e-4	4.24324e-5	0.00613535	8.98949e-4
chr14	52682324	52682408	14630474	0	-	0.488095	(0.455,0.49]	chr14	1146033	1	CDS	CDS:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000554019.5:ENST00000556039.5:ENST00000629528.2:ENST00000554251.5:ENST00000556223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.50904	3.8283899999999997	5.14774	0.0310515	7.45457e-5	0.131262	0.00142165
chr10	5059785	5059885	10907464	0	+	0.52	(0.49,0.53]	chr10	830226	105	INTRON	INTRON	AKR1C3	ENSG00000196139.14	ENST00000605781.5:ENST00000470862.6:ENST00000480822.5:ENST00000602997.5:ENST00000439082.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	294	2	2.56769	3.828385	5.08908	2.06912e-5	1e-12	5.50693e-4	2.25522e-10
chr16	58163367	58163465	15965659	0	-	0.438776	(0.42,0.455]	chr16	1280935	40	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	3.10874	3.8283300000000002	4.54792	9.66045e-4	5.40397e-4	0.0115185	0.00688813
chr1	51818065	51818135	1016592	0	-	0.428571	(0.42,0.455]	chr1	105284	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000473805.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	2.16214	3.82821	5.49428	0.00696724	1.07978e-5	0.0474632	2.9314e-4
chr2	86144538	86144624	2772782	0	-	0.476744	(0.455,0.49]	chr2	246309	3	CDS	CDS:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	3.55829	3.8280950000000002	4.0979	4.15156e-5	7.58387e-8	9.7509e-4	4.3988e-6
chr6	31817770	31817858	7116681	0	+	0.340909	(0.33,0.36]	chr6	546206	2	UTR3	UTR3:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	17	176	2	3.3605	3.82797	4.29544	3.03669e-8	7.04468e-11	2.21081e-6	9.97873e-9
chr10	73006366	73006442	11568226	0	-	0.5	(0.49,0.53]	chr10	880431	1	EXON_PSEUDO	EXON_PSEUDO	RPL17P50	ENSG00000213700.3	ENST00000396131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	26	2	2.38097	3.82787	5.27477	0.0425419	4.14521e-5	0.167547	8.8376e-4
chr17	44857074	44857157	16559973	0	-	0.493976	(0.49,0.53]	chr17	1359718	1	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000588340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.38097	3.82787	5.27477	0.0425419	4.14521e-5	0.167547	8.8376e-4
chr1	236581317	236581414	1568518	0	-	0.360825	(0.36,0.39]	chr1	157076	2	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.33241	3.8273900000000003	4.32237	0.00273222	0.00193631	0.0237575	0.0192272
chr3	172821188	172821283	3891861	0	+	0.273684	[0,0.29]	chr3	329335	11	UTR3	UTR3:EXON_MRNA	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000437296.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.80134	3.8270049999999998	4.85267	0.0049344	2.14908e-4	0.0379087	0.00332687
chr22	24567983	24568079	18314208	0	+	0.5	(0.49,0.53]	chr22	1556257	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SNRPD3:KB-1995A5.6	ENSG00000100028.12:ENSG00000286070.2	ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	3.68088	3.82683	3.97278	1.82756e-5	2.29577e-6	4.52458e-4	8.86852e-5
chr2	61214331	61214421	2687659	0	-	0.377778	(0.36,0.39]	chr2	239963	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000467128.5:ENST00000472689.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	3.18642	3.82678	4.46714	0.00359152	0.00155822	0.0302391	0.0156889
chr3	120329301	120329401	4404410	0	-	0.37	(0.36,0.39]	chr3	365211	49	UTR3	UTR3:EXON_MRNA	LRRC58	ENSG00000163428.4	ENST00000295628.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.18642	3.82678	4.46714	0.00359152	0.00155822	0.0302391	0.0156889
chr2	26230242	26230294	2566046	0	-	0.538462	(0.53,0.59]	chr2	230609	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.61856	3.8265450000000003	4.03453	0.0303021	4.6e-5	0.129773	9.56296e-4
chr4	79978006	79978090	5484236	0	-	0.535714	(0.53,0.59]	chr4	439552	1	CDS	CDS:UTR3:EXON_MRNA	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.61856	3.8265450000000003	4.03453	0.0303021	4.6e-5	0.129773	9.56296e-4
chr12	54463170	54463233	13344072	0	-	0.380952	(0.36,0.39]	chr12	1049898	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.78659	3.8263100000000003	4.86603	0.0132982	1.68962e-4	0.0740932	0.00297945
chr12	54231123	54231214	13342837	0	-	0.340659	(0.33,0.36]	chr12	1049600	3	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	29	2	2.17058	3.82622	5.48186	0.01664	7.22374e-6	0.0878065	2.11873e-4
chr2	170950203	170950290	2206341	0	+	0.436782	(0.42,0.455]	chr2	201826	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000444801.5:ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000488928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.63665	3.826135	5.01562	0.0048172	1.01971e-4	0.0365653	0.0019861
chr6	143497358	143497458	8005258	0	-	0.44	(0.42,0.455]	chr6	611746	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000451668.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.63665	3.826135	5.01562	0.0048172	1.01971e-4	0.0365653	0.0019861
chr19	10139746	10139817	17457810	0	-	0.549296	(0.53,0.59]	chr19	1460438	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000586588.5:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000589351.6:ENST00000678957.1:ENST00000678107.1:ENST00000678647.1:ENST00000676610.1:ENST00000588913.5:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000678239.1:ENST00000587197.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.21941	3.8261	4.43279	0.00266171	0.0026472	0.0240332	0.0231864
chr11	66244158	66244256	11989346	0	+	0.561224	(0.53,0.59]	chr11	921512	10	UTR3	UTR3:EXON_MRNA	PACS1	ENSG00000175115.13	ENST00000320580.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.7898	3.82606	4.86232	0.0128364	4.57805e-4	0.0719798	0.00608573
chr1	42766506	42766597	966642	0	-	0.648352	(0.59,1]	chr1	101785	1	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000372526.2:ENST00000492956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.93698	3.82604	4.7151	0.00412279	0.0015925	0.0325842	0.0159023
chr9	34087563	34087661	10634756	0	-	0.612245	(0.59,1]	chr9	803967	13	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	3.30708	3.825975	4.34487	0.0123678	0.00252451	0.0705839	0.0226777
chr12	6386065	6386162	12712774	0	+	0.639175	(0.59,1]	chr12	986373	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	LTBR	ENSG00000111321.11	ENST00000539925.5:ENST00000228918.9:ENST00000536876.5:ENST00000535739.5:ENST00000543190.5:ENST00000544454.5:ENST00000541102.1:ENST00000440421.2:ENST00000444814.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.42639	3.82594	5.22549	0.0409084	5.13843e-4	0.163285	0.00665221
chr19	41331177	41331210	17568489	0	-	0.636364	(0.59,1]	chr19	1476879	1	CDS	CDS:EXON_MRNA:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.42639	3.82594	5.22549	0.0409084	5.13843e-4	0.163285	0.00665221
chr18	35333403	35333501	17076650	0	-	0.306122	(0.29,0.33]	chr18	1402842	13	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	3.46533	3.825885	4.18644	2.24958e-5	1.56826e-5	5.90075e-4	3.99464e-4
chr12	120694823	120694911	13117451	0	+	0.454545	(0.42,0.455]	chr12	1023995	1	CDS	CDS:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2:ENST00000545525.5:ENST00000535656.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.41041	3.82587	4.24133	0.00326918	1.00299e-4	0.0282494	0.00180803
chr15	34229847	34229924	14860515	0	+	0.402597	(0.39,0.42]	chr15	1167014	1	UTR3	UTR3:EXON_MRNA	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000558205.5:ENST00000558102.1:ENST00000559421.1:ENST00000561246.1:ENST00000560947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	3.76141	3.825665	3.88992	2.14058e-4	4.22388e-6	0.00359478	1.34652e-4
chr22	32498238	32498334	18354454	0	+	0.53125	(0.53,0.59]	chr22	1560439	2	CDS	CDS:UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.01641	3.8255749999999997	5.63474	0.0108917	7.53339e-6	0.0645168	2.17987e-4
chr2	227524838	227524915	2415076	0	+	0.454545	(0.42,0.455]	chr2	217238	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1:ENST00000486932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	3.08182	3.8253500000000003	4.56888	6.80627e-4	1.1745e-6	0.00876781	4.57782e-5
chr19	40622489	40622578	17330463	0	+	0.651685	(0.59,1]	chr19	1436043	2	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000318809.11:ENST00000597816.5:ENST00000622107.4:ENST00000595665.1:ENST00000622457.1:ENST00000594116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	3.41536	3.82533	4.2353	0.0165254	0.00164655	0.0873033	0.0163443
chr1	160349485	160349577	496707	0	+	0.445652	(0.42,0.455]	chr1	53450	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000437169.5:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000467837.5:ENST00000491332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.36247	3.825145	5.28782	0.0462889	3.65299e-5	0.176878	7.95843e-4
chr14	76063157	76063256	14409112	0	+	0.444444	(0.42,0.455]	chr14	1126191	34	INTRON	INTRON	IFT43	ENSG00000119650.13	ENST00000679083.1:ENST00000314067.11:ENST00000542766.5:ENST00000555305.5:ENST00000554026.5:ENST00000238628.10:ENST00000553438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.36247	3.825145	5.28782	0.0462889	3.65299e-5	0.176878	7.95843e-4
chr2	222916318	222916396	2406070	0	+	0.346154	(0.33,0.36]	chr2	216568	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	79	2	3.52218	3.8251049999999998	4.12803	2.90032e-5	1.6272e-7	7.24986e-4	8.5138e-6
chr12	56597837	56597934	13351660	0	-	0.505155	(0.49,0.53]	chr12	1051592	24	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	3.04894	3.824945	4.60095	5.10967e-5	1.4298e-8	0.00114668	1.0564e-6
chr1	154261591	154261644	480061	0	+	0.509434	(0.49,0.53]	chr1	49717	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000475373.1:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.23006	3.824685	4.41931	0.00253719	3.4941e-6	0.0233955	1.14163e-4
chr1	2309326	2309424	7399	0	+	0.367347	(0.36,0.39]	chr1	1667	27	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.75007	3.824625	3.89918	2.12157e-4	1.0624e-4	0.00329275	0.00205241
chr6	142198526	142198615	7442797	0	+	0.52809	(0.49,0.53]	chr6	569605	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9:ENST00000491881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.52637	3.8245	4.12263	0.00591451	6.68602e-4	0.0427941	0.00820018
chr6	52279519	52279599	7736752	0	-	0.475	(0.455,0.49]	chr6	593745	3	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.11002	3.82439	4.53876	1.15314e-4	1.31171e-6	0.0020426	5.53834e-5
chr1	228097214	228097262	744018	0	+	0.5	(0.49,0.53]	chr1	75086	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ARF1:MIR3620	ENSG00000143761.16:ENSG00000284163.1	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000482962.5:ENST00000497165.5:ENST00000490705.1:ENST00000584469.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	5	82	2	3.45044	3.8240299999999996	4.19762	1.22935e-5	4.23721e-7	3.58328e-4	1.92035e-5
chr11	119092124	119092163	12162012	0	+	0.564103	(0.53,0.59]	chr11	937735	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000546302.6:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000543090.5:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	3.76914	3.8239900000000002	3.87884	1.11478e-4	1.07544e-5	0.00213212	2.9314e-4
chr4	144140598	144140635	5696858	0	-	0.243243	[0,0.29]	chr4	451587	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1:ENST00000644398.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	43	2	3.497	3.823845	4.15069	3.7616e-5	9.67198e-6	9.04244e-4	2.68661e-4
chr5	159950492	159950583	6945492	0	-	0.483516	(0.455,0.49]	chr5	531788	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP40	ENSG00000248626.1	ENST00000505218.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	104	2	3.20644	3.8236100000000004	4.44078	2.6997e-6	6.19355e-7	1.01511e-4	2.65225e-5
chr1	151400441	151400514	471577	0	+	0.506849	(0.49,0.53]	chr1	48190	1	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	2.87508	3.8235150000000004	4.77195	4.55699e-4	2.57118e-7	0.00645757	1.25706e-5
chr19	6531136	6531219	17213486	0	+	0.771084	(0.59,1]	chr19	1415910	1	CDS	CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.0452	3.8234250000000003	5.60165	0.0179494	1.30928e-4	0.0939469	0.00243846
chr9	110251409	110251462	10792367	0	-	0.45283	(0.42,0.455]	chr9	817307	2	CDS	CDS:EXON_MRNA	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	3.7355	3.82341	3.91132	1.29688e-5	3.67157e-6	3.73168e-4	1.1967e-4
chr10	110293465	110293562	11691476	0	-	0.298969	(0.29,0.33]	chr10	891746	29	UTR3	UTR3:EXON_MRNA	SMNDC1	ENSG00000119953.14	ENST00000369603.10	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.65226	3.823395	3.99453	8.03892e-5	2.31878e-5	0.00167226	5.49766e-4
chr7	107758892	107758985	8457136	0	+	0.505376	(0.49,0.53]	chr7	646250	9	CDS	CDS:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.46766	3.82336	6.17906	0.0523669	1.01082e-7	0.194793	5.6272e-6
chr1	32031581	32031640	125739	0	+	0.457627	(0.455,0.49]	chr1	15430	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	3.13787	3.82296	4.50805	0.00122223	4.66183e-4	0.0135383	0.00616585
chr15	58692269	58692364	15311644	0	-	0.515789	(0.49,0.53]	chr15	1208368	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADAM10:HSP90AB4P	ENSG00000137845.15:ENSG00000282100.1	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1:ENST00000631455.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	3	45	2	3.36227	3.822795	4.28332	0.00338762	2.26725e-5	0.0288632	5.39086e-4
chr5	140243411	140243505	6253240	0	+	0.585106	(0.53,0.59]	chr5	487354	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	3.15313	3.822715	4.4923	2.62198e-5	2.39218e-6	6.06365e-4	9.1799e-5
chr19	49498030	49498050	17370808	0	+	0.6	(0.59,1]	chr19	1443160	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000596873.1:ENST00000270625.7:ENST00000594493.1:ENST00000601216.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	441	2	3.50827	3.8224650000000002	4.13666	3.11061e-6	2.17254e-9	1.15321e-4	2.07131e-7
chr11	6615502	6615545	12249935	0	-	0.488372	(0.455,0.49]	chr11	946845	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1:ENST00000524924.2:ENST00000436873.7	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.69053	3.82231	4.95409	0.0182983	5.5347e-8	0.0925808	3.37102e-6
chr2	63684466	63684547	1850150	0	+	0.395062	(0.39,0.42]	chr2	175445	3	EXON_PSEUDO	EXON_PSEUDO	RPL27P6	ENSG00000234488.1	ENST00000411843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	78	2	3.05257	3.82224	4.59191	8.21746e-6	8.64688e-7	2.34686e-4	3.91779e-5
chr15	90221689	90221765	15098465	0	+	0.5	(0.49,0.53]	chr15	1187778	2	CDS	CDS:UTR3:EXON_MRNA	SEMA4B	ENSG00000185033.14	ENST00000332496.10:ENST00000411539.6:ENST00000560089.5:ENST00000558065.1:ENST00000558975.1:ENST00000559074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	3.08487	3.8220799999999997	4.55929	0.00116196	6.09273e-4	0.0130851	0.00760626
chr10	69401509	69401603	11096855	0	+	0.62766	(0.59,1]	chr10	843823	5	UTR3	UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	66	2	2.08709	3.8219499999999997	5.55681	0.00890645	1.60495e-4	0.0565003	0.00286914
chr7	10763887	10763987	8678033	0	-	0.33	(0.29,0.33]	chr7	663704	2020	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	2.94844	3.8218699999999997	4.6953	0.00217122	4.88271e-4	0.0208941	0.00638318
chr2	86491207	86491275	1927453	0	+	0.411765	(0.39,0.42]	chr2	181680	2	CDS	CDS:UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000491383.5:ENST00000470160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	2.87247	3.821765	4.77106	3.03764e-4	1.58014e-4	0.00472028	0.00261731
chr6	26199748	26199839	7101573	0	+	0.593407	(0.59,1]	chr6	542850	2	CDS	CDS:EXON_MRNA	H2BC7	ENSG00000277224.2	ENST00000356530.5	protein_coding	protein_coding	protein_coding	protein_coding	8	224	2	2.73574	3.82173	4.90772	1.51529e-4	1.90013e-8	0.00252765	1.47322e-6
chr3	195786830	195786930	4661135	0	-	0.59	(0.53,0.59]	chr3	385270	82	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	3.33569	3.821725	4.30776	0.00407289	1.57373e-4	0.0324137	0.00260854
chr1	207645233	207645330	688825	0	+	0.659794	(0.59,1]	chr1	69936	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_PSEUDO	CR1L:CD46P1	ENSG00000197721.17:ENSG00000244703.3	ENST00000531844.5:ENST00000508064.7:ENST00000441364.1	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:unprocessed_pseudogene	2	74	2	3.70806	3.82166	3.93526	5.14321e-4	1.599e-4	0.00719062	0.00263454
chr14	101927503	101927600	14494909	0	+	0.350515	(0.33,0.36]	chr14	1132932	24	UTR3	UTR3:EXON_MRNA	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.7655	3.821575	4.87765	0.0175892	2.2423e-4	0.0918323	0.00344776
chr12	120440633	120440730	13116074	0	+	0.371134	(0.36,0.39]	chr12	1023754	2	UTR3	UTR3:EXON_MRNA:INTRON	COX6A1:AL021546.6	ENSG00000111775.3:ENSG00000111780.8	ENST00000229379.3:ENST00000551806.1:ENST00000549525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	3.77672	3.82149	3.86626	6.18583e-6	1.05661e-6	2.02643e-4	4.18995e-5
chr1	150266521	150266621	1288639	0	-	0.56	(0.53,0.59]	chr1	128182	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8:ENST00000461320.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.1234	3.8214200000000003	4.51944	0.00390623	2.00484e-6	0.0322851	7.16652e-5
chr1	11680352	11680426	861514	0	-	0.581081	(0.53,0.59]	chr1	87333	1	CDS	CDS:EXON_MRNA	MAD2L2	ENSG00000116670.15	ENST00000235310.7:ENST00000376692.9:ENST00000376672.5:ENST00000376669.9:ENST00000376667.7:ENST00000445656.5:ENST00000456915.1:ENST00000376664.10:ENST00000376655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr1	26794802	26794855	111120	0	+	0.54717	(0.53,0.59]	chr1	13385	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PIGV	ENSG00000060642.11	ENST00000455364.2:ENST00000674335.1:ENST00000674202.1:ENST00000472757.5:ENST00000674222.1:ENST00000431541.6:ENST00000374145.6:ENST00000674273.1:ENST00000078527.9:ENST00000674317.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr1	48319806	48319906	990231	0	-	0.54	(0.53,0.59]	chr1	104335	136	INTRON	INTRON	SPATA6	ENSG00000132122.12	ENST00000371847.8:ENST00000396199.7:ENST00000371843.7:ENST00000603831.5:ENST00000371841.1:ENST00000490850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr1	155256077	155256174	1307277	0	-	0.587629	(0.53,0.59]	chr1	132092	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr11	62578842	62578936	12409219	0	-	0.585106	(0.53,0.59]	chr11	961002	4	CDS	CDS:EXON_MRNA	RP11-864I4.1:TUT1	ENSG00000255508.7:ENSG00000149016.16	ENST00000496634.2:ENST00000308436.11:ENST00000476907.6:ENST00000278279.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr11	119079128	119079214	12161886	0	+	0.55814	(0.53,0.59]	chr11	937670	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VPS11	ENSG00000160695.15	ENST00000621676.5:ENST00000614944.4:ENST00000622309.4:ENST00000620429.4:ENST00000524454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr12	6638143	6638212	13187752	0	-	0.550725	(0.53,0.59]	chr12	1032463	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACRBP	ENSG00000111644.8	ENST00000229243.7:ENST00000540513.1:ENST00000414226.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr12	126723411	126723505	13145185	0	+	0.531915	(0.53,0.59]	chr12	1027319	1	EXON_LNCRNA	EXON_LNCRNA	LINC00943	ENSG00000189238.6	ENST00000667256.1:ENST00000658458.1:ENST00000667312.1:ENST00000670225.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr14	77754968	77755068	14719182	0	-	0.56	(0.53,0.59]	chr14	1153546	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5:ENST00000554324.1:ENST00000557663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr16	67879236	67879309	15712334	0	+	0.547945	(0.53,0.59]	chr16	1250750	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EDC4	ENSG00000038358.15	ENST00000358933.10:ENST00000572221.5:ENST00000536072.6:ENST00000574770.5:ENST00000573992.5:ENST00000572031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr17	2701202	2701265	16407616	0	-	0.587302	(0.53,0.59]	chr17	1335643	2	CDS	CDS:EXON_MRNA	CLUH	ENSG00000132361.18	ENST00000570628.6:ENST00000574426.7:ENST00000435359.5:ENST00000651024.2:ENST00000575014.5:ENST00000572129.1:ENST00000571539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr17	64005211	64005292	16636207	0	-	0.54321	(0.53,0.59]	chr17	1368049	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5:ENST00000584084.1:ENST00000584403.5:ENST00000580011.1:ENST00000580389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr19	55591570	55591667	17632981	0	-	0.546392	(0.53,0.59]	chr19	1489633	3	UTR3	UTR3:EXON_MRNA	FIZ1	ENSG00000179943.8	ENST00000221665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr5	1330331	1330383	6423438	0	-	0.576923	(0.53,0.59]	chr5	500708	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr5	25909502	25909598	5910407	0	+	0.552083	(0.53,0.59]	chr5	463553	1	EXON_PSEUDO	EXON_PSEUDO	MSNP1	ENSG00000251593.1	ENST00000511640.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr6	32830266	32830353	7667149	0	-	0.551724	(0.53,0.59]	chr6	586785	1	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4:ENST00000464100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr6	43640267	43640350	7159480	0	+	0.578313	(0.53,0.59]	chr6	553385	4	CDS	CDS:EXON_MRNA	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr6	116278987	116279080	7908903	0	-	0.537634	(0.53,0.59]	chr6	605659	5	CDS	CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr7	42932117	42932158	8791733	0	-	0.560976	(0.53,0.59]	chr7	670237	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr7	76013741	76013814	8862568	0	-	0.561644	(0.53,0.59]	chr7	677393	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STYXL1	ENSG00000127952.17	ENST00000360591.7:ENST00000248600.5:ENST00000359697.8:ENST00000340062.9:ENST00000430497.5:ENST00000438695.5:ENST00000431581.5:ENST00000454618.5:ENST00000451157.1:ENST00000474328.5:ENST00000460184.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr9	94459412	94459507	10367790	0	+	0.578947	(0.53,0.59]	chr9	780591	1	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr9	136791946	136792021	10512698	0	+	0.533333	(0.53,0.59]	chr9	796338	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM141:RP11-216L13.17	ENSG00000244187.8:ENSG00000272896.1	ENST00000290079.9:ENST00000465017.5:ENST00000483187.5:ENST00000456614.2:ENST00000479737.1:ENST00000484854.1:ENST00000489739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chrX	47570877	47570944	18687859	0	+	0.537313	(0.53,0.59]	chrX	1593535	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARAF	ENSG00000078061.14	ENST00000377045.9:ENST00000470206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chrX	129829060	129829141	19219896	0	-	0.54321	(0.53,0.59]	chrX	1633240	2	CDS	CDS:EXON_MRNA	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.81839	3.82123	3.82407	0.0184435	0.0179666	0.0945306	0.0918323
chr3	33864067	33864129	3399875	0	+	0.596774	(0.59,1]	chr3	295755	2	CDS	CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5:ENST00000489869.1:ENST00000473593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.44587	3.821175	5.19648	0.0105307	7.35336e-4	0.0644466	0.00921643
chr11	314952	315013	11756477	0	+	0.672131	(0.59,1]	chr11	897775	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000528780.5:ENST00000328221.5:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1:ENST00000525554.1:ENST00000680611.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	191	2	3.55009	3.82088	4.09167	1.58522e-5	6.29881e-7	4.03514e-4	2.9908e-5
chr5	115616317	115616417	6777010	0	-	0.45	(0.42,0.455]	chr5	519916	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	75	2	3.53707	3.820795	4.10452	6.65925e-6	8.219e-7	1.9719e-4	3.75569e-5
chr11	10799212	10799282	12272554	0	-	0.485714	(0.455,0.49]	chr11	948977	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000525606.5:ENST00000534470.1:ENST00000528839.1:ENST00000534272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	64	2	3.68903	3.8207649999999997	3.9525	1.71879e-5	2.64659e-6	4.32994e-4	9.98197e-5
chr11	4119846	4119946	11774277	0	+	0.43	(0.42,0.455]	chr11	900996	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5:ENST00000526304.5:ENST00000528470.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	2.42938	3.820625	5.21187	0.0045028	5.5797e-5	0.0349711	0.00112719
chr10	125836174	125836274	11305247	0	+	0.4	(0.39,0.42]	chr10	862166	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	BCCIP	ENSG00000107949.17	ENST00000368759.5:ENST00000299130.7:ENST00000278100.11	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr12	48145906	48146006	12861255	0	+	0.41	(0.39,0.42]	chr12	998592	3	UTR3	UTR3:EXON_MRNA	PFKM	ENSG00000152556.17	ENST00000550345.6:ENST00000550924.6:ENST00000549941.7:ENST00000340802.12:ENST00000547581.5:ENST00000642730.1:ENST00000551339.6:ENST00000546964.5:ENST00000359794.11:ENST00000551804.5:ENST00000312352.11:ENST00000547587.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr2	131289348	131289448	2067182	0	+	0.42	(0.39,0.42]	chr2	194220	4	SS5_PROX	SS5_PROX:INTRON	PLEKHB2:FAR2P4	ENSG00000115762.16:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5:ENST00000416266.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr2	135723936	135724021	2082948	0	+	0.4	(0.39,0.42]	chr2	195394	1	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr20	36660336	36660384	17957285	0	-	0.416667	(0.39,0.42]	chr20	1521519	1	CDS	CDS:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr3	130967144	130967240	3738271	0	+	0.395833	(0.39,0.42]	chr3	320174	1	CDS	CDS:EXON_MRNA	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000515854.5:ENST00000514654.5:ENST00000504571.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr5	69272891	69272966	6020129	0	+	0.4	(0.39,0.42]	chr5	471401	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000506563.5:ENST00000256443.8:ENST00000510106.5:ENST00000514676.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.49145	3.8201549999999997	4.14886	0.0350273	0.00415881	0.141505	0.0325842
chr20	51528400	51528500	18008607	0	-	0.4	(0.39,0.42]	chr20	1526430	39	INTRON	INTRON	NFATC2	ENSG00000101096.20	ENST00000396009.7:ENST00000371564.8:ENST00000609943.5:ENST00000609507.1:ENST00000414705.5:ENST00000610033.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.86895	3.820005	4.77106	0.00177945	3.03764e-4	0.0172974	0.00472028
chr6	136278972	136279069	7982513	0	-	0.381443	(0.36,0.39]	chr6	610363	2	SS3_PROX	SS3_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.39803	3.819985	4.24194	0.00276729	0.00122711	0.0247437	0.0130695
chrX	49694707	49694770	19066138	0	-	0.365079	(0.36,0.39]	chrX	1621429	1	CDS_START	CDS_START:CDS:EXON_MRNA	PAGE1	ENSG00000068985.5	ENST00000376150.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.39803	3.819985	4.24194	0.00276729	0.00122711	0.0247437	0.0130695
chr2	117822203	117822261	2021778	0	+	0.344828	(0.33,0.36]	chr2	191086	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000474694.1:ENST00000489933.1:ENST00000415038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.47163	3.819805	5.16798	0.0129725	4.80331e-5	0.0724783	9.91058e-4
chr21	45510162	45510261	18145928	0	+	0.69697	(0.59,1]	chr21	1539854	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	101	2	3.81411	3.8193349999999997	3.82456	3.02854e-4	1.87674e-5	0.00472028	4.60644e-4
chr6	34424668	34424754	7673859	0	-	0.627907	(0.59,1]	chr6	588074	1	CDS	CDS:EXON_MRNA	RPS10-NUDT3:RPS10	ENSG00000270800.3:ENSG00000124614.16	ENST00000639725.1:ENST00000639877.1:ENST00000605528.2:ENST00000648437.1:ENST00000644700.1:ENST00000344700.8:ENST00000621356.3:ENST00000467531.5:ENST00000464218.5:ENST00000644393.1:ENST00000494077.6:ENST00000480942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	734	2	3.09772	3.819295	4.54087	5.45941e-7	2.4024e-10	2.38863e-5	3.28401e-8
chr7	87835552	87835652	8913772	0	-	0.33	(0.29,0.33]	chr7	680337	21	UTR3	UTR3:EXON_MRNA	SLC25A40	ENSG00000075303.13	ENST00000341119.10	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.83531	3.8192649999999997	4.80322	0.00228447	2.14303e-4	0.0209856	0.00359478
chr19	48905752	48905818	17367673	0	+	0.621212	(0.59,1]	chr19	1442118	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	99	2	3.2366	3.818865	4.40113	4.06803e-4	1.5917e-5	0.00552995	4.44589e-4
chr19	9820140	9820218	17223478	0	+	0.564103	(0.53,0.59]	chr19	1418083	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P15	ENSG00000267119.1	ENST00000585756.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	64	2	2.94125	3.81835	4.69545	0.0012261800000000001	5.62788e-7	0.0135648	2.45035e-5
chr17	81845553	81845647	16709512	0	-	0.606383	(0.59,1]	chr17	1377681	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	455	2	2.9981	3.818305	4.63851	3.68402e-4	6.08442e-11	0.00553314	8.74998e-9
chr17	50382112	50382209	16585114	0	-	0.494845	(0.49,0.53]	chr17	1363112	10	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	3.74226	3.81797	3.89368	4.1076e-6	1.44724e-6	1.44512e-4	5.46137e-5
chr6	32155885	32155978	7118451	0	+	0.55914	(0.53,0.59]	chr6	546924	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	127	2	3.79115	3.81787	3.84459	1.09718e-6	1.41513e-7	4.76944e-5	7.53989e-6
chr2	84916362	84916461	1921003	0	+	0.616162	(0.59,1]	chr2	180721	6	EXON_PSEUDO	EXON_PSEUDO	RPS2P17	ENSG00000213399.3	ENST00000449856.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	49	2	2.24397	3.817545	5.39112	0.0206682	2.53595e-4	0.0997234	0.00381472
chr2	157308647	157308728	2152620	0	+	0.419753	(0.39,0.42]	chr2	198624	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.86368	3.8173700000000004	4.77106	0.0101619	3.03764e-4	0.0627153	0.00472028
chr8	17230024	17230123	9729250	0	-	0.414141	(0.39,0.42]	chr8	735884	52	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.86368	3.8173700000000004	4.77106	0.0101619	3.03764e-4	0.0627153	0.00472028
chr11	57489321	57489392	12394720	0	-	0.521127	(0.49,0.53]	chr11	958743	2	CDS	CDS:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.35133	3.817325	4.28332	0.00338762	0.00150139	0.0288632	0.0152367
chr19	40447888	40447988	17566483	0	-	0.58	(0.53,0.59]	chr19	1476385	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	321	2	2.93384	3.81731	4.70078	1.84358e-6	1e-12	7.41241e-5	2.25522e-10
chr3	182913866	182913948	3944854	0	+	0.487805	(0.455,0.49]	chr3	331288	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000490303.5:ENST00000466758.5:ENST00000491699.6:ENST00000484691.1:ENST00000475636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.40664	3.81729	5.22794	0.0123662	4.80556e-5	0.0705839	9.91058e-4
chr2	121765665	121765764	2034656	0	+	0.40404	(0.39,0.42]	chr2	192257	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSN	ENSG00000211460.12	ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000490104.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	2.74243	3.817195	4.89196	0.00369167	2.62166e-4	0.030936	0.0039188
chr15	41279389	41279488	14885225	0	+	0.494949	(0.49,0.53]	chr15	1169243	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000392151.6:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	2.74029	3.81717	4.89405	3.42161e-4	2.57983e-4	0.00482279	0.00419998
chr3	161224996	161225064	3857658	0	+	0.411765	(0.39,0.42]	chr3	327593	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1:ENST00000478160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	2.99507	3.81695	4.63883	0.00637824	5.68159e-4	0.0449937	0.0077844
chr21	43774002	43774101	18273570	0	-	0.474747	(0.455,0.49]	chr21	1549767	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSTB	ENSG00000160213.9	ENST00000639959.1:ENST00000640406.1:ENST00000480147.3:ENST00000675996.1:ENST00000291568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	85	2	3.44026	3.816795	4.19333	8.71641e-5	3.27933e-8	0.00177086	2.15416e-6
chr19	47780427	47780526	17363778	0	+	0.585859	(0.53,0.59]	chr19	1441447	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SELENOW	ENSG00000178980.15	ENST00000509570.6:ENST00000612212.4:ENST00000593892.5:ENST00000599874.5:ENST00000601419.5:ENST00000595615.1:ENST00000601048.6:ENST00000598273.5:ENST00000595509.1:ENST00000598956.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	2.36244	3.816655	5.27087	0.0131162	5.9416e-5	0.073569	0.00130151
chr12	8942391	8942466	13197241	0	-	0.533333	(0.53,0.59]	chr12	1033922	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1:ENST00000543704.5:ENST00000537621.1:ENST00000543258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.86102	3.81662	4.77222	0.0017805	6.67251e-4	0.0172974	0.00867533
chr1	93894613	93894670	1175482	0	-	0.368421	(0.36,0.39]	chr1	115691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1:ENST00000467772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	3.60045	3.816325	4.0322	0.00588589	4.13757e-6	0.0427941	1.32555e-4
chr1	146109341	146109432	1271067	0	-	0.516484	(0.49,0.53]	chr1	125894	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF10	ENSG00000271425.9	ENST00000583866.9:ENST00000617010.2	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr10	3140686	3140749	11346745	0	-	0.492063	(0.49,0.53]	chr10	864920	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000678811.1:ENST00000464395.1:ENST00000678756.1:ENST00000490510.6:ENST00000676917.1:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000676719.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000677598.1:ENST00000678539.1:ENST00000455371.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr10	28898995	28899092	11431707	0	-	0.505155	(0.49,0.53]	chr10	871635	1	EXON_PSEUDO	EXON_PSEUDO	RPL21P93	ENSG00000229605.5	ENST00000480465.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr10	102423425	102423525	11668969	0	-	0.53	(0.49,0.53]	chr10	889820	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CUEDC2	ENSG00000107874.11	ENST00000465409.1:ENST00000369937.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr11	60173064	60173129	12401830	0	-	0.507692	(0.49,0.53]	chr11	959725	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MS4A6A	ENSG00000110077.15	ENST00000530839.5:ENST00000420732.6:ENST00000533989.5:ENST00000531914.5:ENST00000529054.5:ENST00000412309.6:ENST00000528851.6:ENST00000426738.6:ENST00000533023.5:ENST00000527254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr11	67245188	67245278	11994821	0	+	0.522222	(0.49,0.53]	chr11	922615	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000525041.5:ENST00000530342.2:ENST00000529124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr12	112409605	112409635	13545936	0	-	0.5	(0.49,0.53]	chr12	1066149	1	EXON_MRNA	EXON_MRNA:INTRON	RPL6	ENSG00000089009.16	ENST00000546368.2:ENST00000550238.1:ENST00000551291.6:ENST00000549562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr17	21188710	21188786	16166030	0	+	0.513158	(0.49,0.53]	chr17	1304090	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DHRS7B	ENSG00000109016.17	ENST00000395511.7:ENST00000578426.5:ENST00000579303.5:ENST00000346603.4:ENST00000583388.1:ENST00000581463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr19	10920658	10920748	17228513	0	+	0.522222	(0.49,0.53]	chr19	1419245	1	CDS	CDS:UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586508.1:ENST00000586298.1:ENST00000592516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr19	49658561	49658642	17371910	0	+	0.506173	(0.49,0.53]	chr19	1443438	3	UTR3	UTR3:EXON_MRNA	SCAF1	ENSG00000126461.15	ENST00000360565.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr2	210455175	210455244	3145551	0	-	0.507246	(0.49,0.53]	chr2	278025	2	CDS	CDS:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7:ENST00000233714.8:ENST00000431941.6:ENST00000448951.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr22	41674532	41674632	18520231	0	-	0.51	(0.49,0.53]	chr22	1581350	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648161.1:ENST00000648674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr3	53122468	53122563	4188890	0	-	0.515789	(0.49,0.53]	chr3	353750	2	CDS	CDS:EXON_MRNA	RFT1	ENSG00000163933.10	ENST00000296292.8:ENST00000394738.7:ENST00000467048.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr5	95566062	95566127	6106847	0	+	0.507692	(0.49,0.53]	chr5	478071	2	CDS	CDS:EXON_MRNA	ARSK	ENSG00000164291.17	ENST00000380009.9:ENST00000513814.5:ENST00000504873.5:ENST00000512106.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr5	123025875	123025968	6791643	0	-	0.526882	(0.49,0.53]	chr5	520663	2	CDS	CDS:EXON_MRNA	PPIC	ENSG00000168938.6	ENST00000306442.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr6	36108379	36108447	7132614	0	+	0.514706	(0.49,0.53]	chr6	549274	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr7	130022456	130022525	9062812	0	-	0.507246	(0.49,0.53]	chr7	692047	3	CDS	CDS:UTR3:EXON_MRNA	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr8	129475752	129475852	10085509	0	-	0.5	(0.49,0.53]	chr8	758221	185	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1:ENST00000676030.1:ENST00000670588.1:ENST00000675072.1:ENST00000664936.1:ENST00000652914.1:ENST00000657069.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr9	83956400	83956500	10712847	0	-	0.52	(0.49,0.53]	chr9	810471	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C9orf64	ENSG00000165118.15	ENST00000376344.8:ENST00000314700.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr9	112034135	112034234	10801436	0	-	0.525253	(0.49,0.53]	chr9	818279	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-4O1.2	ENSG00000259953.2	ENST00000658557.1:ENST00000563434.1:ENST00000568421.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chrX	153704094	153704194	19273649	0	-	0.51	(0.49,0.53]	chrX	1637366	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.69037	3.81607	3.94177	0.0226513	0.0104929	0.10505	0.063428
chr10	68742375	68742427	11091392	0	+	0.557692	(0.53,0.59]	chr10	842970	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	3.80806	3.816065	3.82407	0.0179666	1.65022e-4	0.0918323	0.00269147
chr2	33252760	33252844	1721349	0	+	0.583333	(0.53,0.59]	chr2	168694	2	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000413303.5:ENST00000468091.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	3.80806	3.816065	3.82407	0.0179666	1.65022e-4	0.0918323	0.00269147
chr2	119230319	119230419	2024203	0	+	0.5	(0.49,0.53]	chr2	191363	3	SS3_PROX	SS3_PROX:INTRON	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.11892	3.81602	4.51312	0.00398244	0.00156636	0.0322851	0.0156889
chr6	160040559	160040641	7528266	0	+	0.512195	(0.49,0.53]	chr6	574755	1	CDS	CDS:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.11892	3.81602	4.51312	0.00398244	0.00156636	0.0322851	0.0156889
chrX	150993598	150993697	18909621	0	+	0.525253	(0.49,0.53]	chrX	1610097	2	EXON_PSEUDO	EXON_PSEUDO	RPL19P21	ENSG00000230508.1	ENST00000424919.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	3.11892	3.81602	4.51312	0.00398244	0.00156636	0.0322851	0.0156889
chr12	57796197	57796292	12904848	0	+	0.515789	(0.49,0.53]	chr12	1006061	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-571M6.15:TSFM	ENSG00000257921.6:ENSG00000123297.20	ENST00000651284.1:ENST00000540550.6:ENST00000323833.12:ENST00000651899.1:ENST00000548851.5:ENST00000550559.5:ENST00000652027.2:ENST00000651066.1:ENST00000543727.5:ENST00000457189.1:ENST00000497617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.99849	3.8159349999999996	4.63338	0.00630123	9.56909e-4	0.0445415	0.010724
chr7	48632690	48632790	8274824	0	+	0.4	(0.39,0.42]	chr7	630526	57	INTRON	INTRON	ABCA13	ENSG00000179869.15	ENST00000435803.6:ENST00000544596.5:ENST00000453246.5:ENST00000411975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	40	510	2	3.33177	3.81586	4.29995	1.13821e-9	1e-12	1.28024e-7	2.25522e-10
chr1	32172286	32172385	127031	0	+	0.525253	(0.49,0.53]	chr1	15636	15	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr1	100990112	100990210	1200498	0	-	0.520408	(0.49,0.53]	chr1	117246	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DPH5	ENSG00000117543.21	ENST00000370109.8:ENST00000370105.7:ENST00000488789.5:ENST00000492067.5:ENST00000427040.2:ENST00000481871.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr1	155766320	155766417	1311052	0	-	0.525773	(0.49,0.53]	chr1	132658	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GON4L	ENSG00000116580.19	ENST00000368331.6:ENST00000615926.4:ENST00000437809.5:ENST00000271883.9:ENST00000620426.4:ENST00000361040.9:ENST00000471341.5:ENST00000622608.1:ENST00000497369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr10	75089342	75089438	11576984	0	-	0.5	(0.49,0.53]	chr10	881800	2	EXON_PSEUDO	EXON_PSEUDO	PPIAP13	ENSG00000237882.1	ENST00000434706.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr10	118681764	118681863	11713954	0	-	0.525253	(0.49,0.53]	chr10	893664	55	UTR3	UTR3:EXON_MRNA:INTRON	CACUL1	ENSG00000151893.15	ENST00000544392.5:ENST00000369151.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr11	118630706	118630806	12160023	0	+	0.5	(0.49,0.53]	chr11	937341	1	SS3_PROX	SS3_PROX:INTRON	PHLDB1	ENSG00000019144.19	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr12	13061574	13061668	12742410	0	+	0.510638	(0.49,0.53]	chr12	990547	1	CDS	CDS:EXON_MRNA	FAM234B	ENSG00000084444.14	ENST00000197268.13:ENST00000416494.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr12	110037746	110037842	13084231	0	+	0.510417	(0.49,0.53]	chr12	1020322	3	UTR3	UTR3:EXON_MRNA	ANKRD13A	ENSG00000076513.17	ENST00000261739.9:ENST00000553251.5:ENST00000553246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr16	30780036	30780135	15915613	0	-	0.50505	(0.49,0.53]	chr16	1275614	17	UTR3	UTR3:EXON_MRNA	ZNF629	ENSG00000102870.6	ENST00000262525.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr16	56828976	56829042	15680403	0	+	0.5	(0.49,0.53]	chr16	1246633	1	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000567641.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr17	42613014	42613073	16229301	0	+	0.508475	(0.49,0.53]	chr17	1313162	2	CDS	CDS:UTR3:EXON_MRNA	TUBG1	ENSG00000131462.9	ENST00000680678.1:ENST00000681413.1:ENST00000680672.1:ENST00000681490.1:ENST00000681947.1:ENST00000588056.2:ENST00000251413.8:ENST00000591509.5:ENST00000589688.2:ENST00000681919.1:ENST00000681114.1:ENST00000680617.1:ENST00000679484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr2	210436215	210436303	3145358	0	-	0.522727	(0.49,0.53]	chr2	278003	1	CDS	CDS:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7:ENST00000233714.8:ENST00000431941.6:ENST00000412863.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr2	215318187	215318233	2376953	0	+	0.521739	(0.49,0.53]	chr2	213499	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	ATIC	ENSG00000138363.15	ENST00000444305.5:ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr20	34749588	34749681	17948936	0	-	0.505376	(0.49,0.53]	chr20	1520164	3	CDS	CDS:EXON_MRNA	NCOA6	ENSG00000198646.14	ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr3	129170552	129170570	4443895	0	-	0.5	(0.49,0.53]	chr3	369319	1	CDS	CDS:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr8	21985638	21985691	9221920	0	+	0.528302	(0.49,0.53]	chr8	704979	2	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr8	41598291	41598385	9303934	0	+	0.521277	(0.49,0.53]	chr8	712107	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GPAT4	ENSG00000158669.11	ENST00000521184.1:ENST00000520258.1:ENST00000396987.7:ENST00000519853.5:ENST00000520223.1:ENST00000521121.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.73494	3.81582	3.8967	0.0189345	0.0128791	0.0934721	0.0725185
chr3	53226755	53226816	4188995	0	-	0.57377	(0.53,0.59]	chr3	353774	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	3.30943	3.815775	4.32212	0.0018255	1.84692e-7	0.0183913	9.51079e-6
chr12	76353193	76353293	13424309	0	-	0.25	[0,0.29]	chr12	1056701	15	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.26961	3.8157200000000002	4.36183	0.00229774	0.00170062	0.0210664	0.01759
chr2	135844544	135844614	2897947	0	-	0.285714	[0,0.29]	chr2	258488	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	3.26961	3.8157200000000002	4.36183	0.00229774	0.00170062	0.0210664	0.01759
chr5	154875825	154875922	6315264	0	+	0.412371	(0.39,0.42]	chr5	492585	5	UTR3	UTR3:EXON_MRNA	CNOT8	ENSG00000155508.14	ENST00000517876.5:ENST00000403027.6:ENST00000521450.5:ENST00000285896.11	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.0503	3.81567	4.58104	0.00570576	1.0275e-6	0.0424438	4.08333e-5
chr7	44581165	44581239	8800245	0	-	0.527027	(0.49,0.53]	chr7	671342	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7:ENST00000481238.1:ENST00000477639.5:ENST00000444131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	63	2	3.3222	3.8154899999999996	4.30878	2.96558e-5	7.12421e-6	6.71364e-4	2.28404e-4
chr17	43387321	43387417	16553480	0	-	0.333333	(0.33,0.36]	chr17	1358368	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:INTRON	LINC00910:RNU2-4P	ENSG00000188825.14:ENSG00000277084.1	ENST00000664824.1:ENST00000658096.1:ENST00000662750.1:ENST00000661340.1:ENST00000341011.11:ENST00000658754.1:ENST00000658202.1:ENST00000665553.1:ENST00000662582.1:ENST00000662853.1:ENST00000656132.1:ENST00000667855.1:ENST00000592135.5:ENST00000664287.1:ENST00000656704.1:ENST00000666319.1:ENST00000658683.1:ENST00000592094.1:ENST00000587874.5:ENST00000588654.2:ENST00000586231.1:ENST00000606190.1	snRNA	snRNA	snRNA:lncRNA	snRNA:lncRNA	152	1499	2	3.59238	3.8154449999999995	4.03851	1.81055e-12	1e-12	3.8376e-10	2.46312e-10
chr15	57232711	57232783	14949582	0	+	0.458333	(0.455,0.49]	chr15	1174878	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	3.53124	3.81522	4.0992	2.73975e-5	6.91417e-6	6.95757e-4	2.03942e-4
chrX	154400544	154400626	18917613	0	+	0.585366	(0.53,0.59]	chrX	1611821	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	59	1002	2	3.53941	3.815065	4.09072	2.78402e-10	1e-12	3.73959e-8	2.25522e-10
chr19	44919230	44919289	17349793	0	+	0.627119	(0.59,1]	chr19	1439275	1	UTR3	UTR3:EXON_MRNA	APOC1	ENSG00000130208.10	ENST00000588750.5:ENST00000588802.5:ENST00000592535.6:ENST00000592885.5:ENST00000589781.1:ENST00000592176.1:ENST00000586638.5:ENST00000590334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	49	2	2.76006	3.814915	4.86977	0.00330486	0.00246014	0.027613	0.0230058
chr1	162588762	162588833	507840	0	+	0.323944	(0.29,0.33]	chr1	54805	2	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.54643	3.814865	5.0833	0.0026976	4.57622e-5	0.0236059	0.00105479
chr10	22537200	22537281	11411122	0	-	0.493827	(0.49,0.53]	chr10	869855	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000474335.1:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.21413	3.814865	5.4156	0.00995539	1.84143e-5	0.0621728	4.53637e-4
chr11	125657147	125657246	12194934	0	+	0.393939	(0.39,0.42]	chr11	940884	1	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.66467	3.814385	3.9641	3.60066e-4	6.346e-5	0.00544157	0.00124725
chr19	10923585	10923677	17460894	0	-	0.673913	(0.59,1]	chr19	1461240	2	CDS	CDS:EXON_MRNA	YIPF2	ENSG00000130733.11	ENST00000253031.6:ENST00000586748.6:ENST00000592646.5:ENST00000589971.1:ENST00000591872.1:ENST00000590329.5:ENST00000586575.5:ENST00000587943.5	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	2.42324	3.814375	5.20551	0.0116918	8.27947e-8	0.0686664	4.75561e-6
chr11	118601821	118601914	12159746	0	+	0.408602	(0.39,0.42]	chr11	937279	2	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	12	145	2	3.45622	3.81429	4.17236	3.58134e-8	3.50902e-8	2.56268e-6	2.27764e-6
chr8	124999203	124999303	9595353	0	+	0.42	(0.39,0.42]	chr8	727885	7	UTR5	UTR5:EXON_MRNA:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	9	121	2	3.76709	3.81425	3.86141	5.68955e-7	1.86275e-8	2.74392e-5	1.33145e-6
chr11	57740245	57740336	11952437	0	+	0.461538	(0.455,0.49]	chr11	914746	1	UTR3	UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000378312.8:ENST00000530114.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.46624	3.814195	5.16215	0.0094145	5.04348e-5	0.0592633	0.00113788
chr1	89934059	89934158	349104	0	+	0.424242	(0.42,0.455]	chr1	34169	10	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.77666	3.81408	3.8515	0.0119089	1.85215e-4	0.0686664	0.00296795
chr19	14088038	14088133	17478308	0	-	0.473684	(0.455,0.49]	chr19	1464154	3	UTR3	UTR3:EXON_MRNA	SAMD1	ENSG00000141858.12	ENST00000533683.7	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.73862	3.8139250000000002	4.88923	1.62714e-4	9.45747e-8	0.00290162	5.31584e-6
chr8	100920096	100920195	9976217	0	-	0.434343	(0.42,0.455]	chr8	752728	37	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	3.05889	3.813885	4.56888	0.00524205	1.1745e-6	0.0399155	4.57782e-5
chr19	58406802	58406901	17642744	0	-	0.575758	(0.53,0.59]	chr19	1491023	27	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2619J13.14	ENSG00000232098.3	ENST00000593393.1:ENST00000597309.1:ENST00000597980.1	lncRNA	lncRNA	lncRNA	lncRNA	1	27	2	2.50447	3.81374	5.12301	0.0301162	1.2852e-4	0.130016	0.00241206
chr8	60938295	60938393	9848279	0	-	0.561224	(0.53,0.59]	chr8	745037	7	EXON_PSEUDO	EXON_PSEUDO	NASPP1	ENSG00000255397.1	ENST00000529239.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	27	2	2.50447	3.81374	5.12301	0.0301162	1.2852e-4	0.130016	0.00241206
chr5	140529511	140529606	6255131	0	+	0.421053	(0.42,0.455]	chr5	487634	15	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	98	2	2.6517	3.81373	4.97576	3.09653e-5	3.6832e-8	6.93274e-4	2.61407e-6
chr6	32170512	32170600	7664669	0	-	0.670455	(0.59,1]	chr6	586108	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:PRIMIRNA:INTRON	AGPAT1:MIR6721	ENSG00000204310.13:ENSG00000284469.1	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000617181.1:ENST00000476663.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	1	44	2	3.78188	3.813725	3.84557	0.0410704	3.33896e-4	0.163285	0.00472923
chr19	55643381	55643470	17397015	0	+	0.58427	(0.53,0.59]	chr19	1448833	5	UTR3	UTR3:EXON_MRNA:INTRON	ZNF581:ZNF580:CCDC106	ENSG00000171425.10:ENSG00000213015.9:ENSG00000173581.8	ENST00000587252.5:ENST00000325333.10:ENST00000585995.1:ENST00000592996.5:ENST00000543039.2:ENST00000545125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	3.46349	3.81366	4.16383	0.00659193	9.2216e-4	0.0454205	0.0104432
chr11	27581867	27581961	11876586	0	+	0.510638	(0.49,0.53]	chr11	907991	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	BDNF-AS:RP11-587D21.1	ENSG00000245573.9:ENSG00000240036.4	ENST00000650864.1:ENST00000652063.1:ENST00000530686.6:ENST00000651944.1:ENST00000652663.1:ENST00000651193.1:ENST00000650954.2:ENST00000652516.1:ENST00000502161.7:ENST00000651756.1:ENST00000652325.1:ENST00000650880.1:ENST00000652138.1:ENST00000650862.1:ENST00000651437.1:ENST00000652594.1:ENST00000651103.1:ENST00000651905.1:ENST00000651238.1:ENST00000501663.3:ENST00000652754.1:ENST00000651742.1:ENST00000651796.1:ENST00000651707.1:ENST00000650815.1:ENST00000651635.1:ENST00000651152.1:ENST00000650855.1:ENST00000651990.1:ENST00000651218.1:ENST00000652212.1:ENST00000651252.2:ENST00000532965.5:ENST00000652244.1:ENST00000500662.7:ENST00000499568.3:ENST00000651997.1:ENST00000651592.1:ENST00000499008.8:ENST00000652574.1:ENST00000501176.7:ENST00000651926.2:ENST00000651264.1:ENST00000651026.1:ENST00000651123.1:ENST00000652133.1:ENST00000650703.1:ENST00000476147.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	41	575	2	3.72409	3.8134949999999996	3.9029	2.30882e-11	2.08722e-11	4.03895e-9	3.3697e-9
chr17	82078337	82078426	16710653	0	-	0.449438	(0.42,0.455]	chr17	1378128	1	UTR3	UTR3:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	3.17449	3.81349	4.45249	7.7054e-5	2.45559e-6	0.00146588	9.39733e-5
chr13	25312979	25313032	13647669	0	+	0.528302	(0.49,0.53]	chr13	1075854	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000495460.1:ENST00000381747.7:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	3.7246	3.81327	3.90194	9.11374e-5	1.36405e-5	0.00182992	3.54667e-4
chr12	50461134	50461192	12872027	0	+	0.482759	(0.455,0.49]	chr12	1000166	1	CDS	CDS:EXON_MRNA:INTRON	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000614335.4:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.3605	3.813215	4.26593	0.00372962	0.00147278	0.0302984	0.0157578
chr22	20952186	20952283	18300205	0	+	0.453608	(0.42,0.455]	chr22	1553647	25	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	155	2	3.72952	3.813145	3.89677	7.2654e-8	5.85595e-9	4.70849e-6	4.90407e-7
chr6	7339294	7339385	7587406	0	-	0.549451	(0.53,0.59]	chr6	578773	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	SSR1:CAGE1:RP11-69L16.5	ENSG00000124783.14:ENSG00000164304.16:ENSG00000220472.1	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8:ENST00000407940.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	3	62	2	3.06939	3.812895	4.5564	6.54756e-4	1.54434e-6	0.00860229	5.75816e-5
chr7	128754625	128754722	8521697	0	+	0.43299	(0.42,0.455]	chr7	650171	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.51988	3.8127649999999997	5.10565	0.00300574	1.5934e-8	0.0267032	1.15646e-6
chr1	1053752	1053827	2433	0	+	0.626667	(0.59,1]	chr1	582	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.99438	3.8127199999999997	4.63106	0.00776449	0.00537945	0.050813	0.0406564
chr15	59116847	59116926	14959917	0	+	0.443038	(0.42,0.455]	chr15	1175700	3	CDS	CDS:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	2.25717	3.8127050000000002	5.36824	6.12524e-4	1.33083e-5	0.0076411	3.81624e-4
chr2	176200993	176201079	3029405	0	-	0.651163	(0.59,1]	chr2	268319	2	EXON_PSEUDO	EXON_PSEUDO	AC016739.2	ENSG00000218175.2	ENST00000405359.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	2.68392	3.8126100000000003	4.9413	0.0202468	0.00191468	0.0984041	0.0190905
chr1	1041627	1041702	2267	0	+	0.72	(0.59,1]	chr1	481	3	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.5215	3.81248	5.10346	0.032241	8.40506e-4	0.135671	0.00981548
chr12	56128594	56128682	12898234	0	+	0.602273	(0.59,1]	chr12	1004201	3	CDS	CDS:UTR5:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000551790.5:ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.5215	3.81248	5.10346	0.032241	8.40506e-4	0.135671	0.00981548
chr3	195782958	195783058	4661096	0	-	0.6	(0.59,1]	chr3	385270	43	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.5215	3.81248	5.10346	0.032241	8.40506e-4	0.135671	0.00981548
chr7	75979514	75979579	8342109	0	+	0.630769	(0.59,1]	chr7	636153	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000426184.1:ENST00000475509.1:ENST00000439297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	3.0542	3.8122849999999997	4.57037	0.00663549	0.0054994	0.0456243	0.0402071
chr1	116375637	116375736	423642	0	+	0.353535	(0.33,0.36]	chr1	41744	10	INTRON	INTRON	ATP1A1	ENSG00000163399.16	ENST00000418797.5:ENST00000295598.10:ENST00000488733.1:ENST00000537345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.93884	3.81222	4.6856	0.00135211	3.92435e-4	0.0140654	0.00583618
chr1	160291818	160291873	1328688	0	-	0.490909	(0.49,0.53]	chr1	135975	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.68246	3.812115	3.94177	0.0104929	3.06313e-4	0.063428	0.00442973
chr1	229530198	229530268	1542657	0	-	0.528571	(0.49,0.53]	chr1	154542	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5:ENST00000486755.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.68246	3.812115	3.94177	0.0104929	3.06313e-4	0.063428	0.00442973
chr2	84441317	84441388	2768933	0	-	0.464789	(0.455,0.49]	chr2	245521	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000483605.5:ENST00000442240.5:ENST00000491642.5:ENST00000430989.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.63872	3.81209	4.98546	0.00510378	4.25596e-8	0.0390492	2.67971e-6
chr1	26278713	26278808	108905	0	+	0.231579	[0,0.29]	chr1	12966	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.70065	3.8119300000000003	4.92321	5.07704e-4	1.17014e-4	0.00660682	0.00222617
chr1	27412649	27412727	908833	0	-	0.512821	(0.49,0.53]	chr1	95026	2	CDS	CDS:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.73494	3.811905	3.88887	0.0189345	9.98984e-5	0.0934721	0.00180257
chr10	8052719	8052814	11363542	0	-	0.505263	(0.49,0.53]	chr10	866571	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATA3-AS1	ENSG00000197308.9	ENST00000355358.1:ENST00000417359.1:ENST00000458727.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	3.73494	3.811905	3.88887	0.0189345	9.98984e-5	0.0934721	0.00180257
chr4	109463179	109463272	5039096	0	+	0.483871	(0.455,0.49]	chr4	409917	4	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.73142	3.811885	3.89235	2.35261e-4	9.60445e-5	0.00356397	0.00190731
chr10	11461540	11461640	11367113	0	-	0.52	(0.49,0.53]	chr10	866869	77	UTR3	UTR3:EXON_MRNA	USP6NL	ENSG00000148429.14	ENST00000609104.5:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.94403	3.8118749999999997	4.67972	0.00122634	6.94757e-4	0.0130695	0.00876781
chr8	100709550	100709643	9976007	0	-	0.483871	(0.455,0.49]	chr8	752674	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	89	1131	2	3.6316	3.8118600000000002	3.99212	4.48441e-12	1e-12	8.56808e-10	2.46312e-10
chr9	133365984	133366028	10880479	0	-	0.386364	(0.36,0.39]	chr9	825859	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	65	2	2.6387	3.811725	4.98475	3.96422e-4	3.80046e-8	0.00587914	2.43689e-6
chr1	227430939	227431035	741181	0	+	0.364583	(0.36,0.39]	chr1	74837	17	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	LINC01641:CTD-2090I13.3	ENSG00000234277.3:ENSG00000242757.1	ENST00000445817.1:ENST00000447187.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	54	2	3.33241	3.81152	4.29063	0.00193631	1.8198e-7	0.0192272	9.38083e-6
chr3	155309711	155309807	4533707	0	-	0.677083	(0.59,1]	chr3	375764	4	EXON_PSEUDO	EXON_PSEUDO	PABPC1P10	ENSG00000239443.1	ENST00000464731.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	257	2	3.48599	3.81144	4.13689	2.69891e-5	2.91405e-8	6.88819e-4	1.94837e-6
chr19	40376691	40376774	17328723	0	+	0.614458	(0.59,1]	chr19	1435579	2	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000488311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	165	2	2.9981	3.811435	4.62477	3.68402e-4	1.01578e-7	0.00553314	5.65209e-6
chr6	30724587	30724682	7112224	0	+	0.452632	(0.42,0.455]	chr6	545067	3	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	543	2	3.78076	3.811435	3.84211	2.32516e-11	4.67515e-12	3.70245e-9	9.65888e-10
chr11	82689628	82689698	12039467	0	+	0.557143	(0.53,0.59]	chr11	928339	2	EXON_PSEUDO	EXON_PSEUDO	RPS28P7	ENSG00000227097.5	ENST00000473748.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	60	2	3.34735	3.811305	4.27526	1.46925e-4	1.03921e-5	0.0026854	2.85526e-4
chr1	21842309	21842380	890828	0	-	0.661972	(0.59,1]	chr1	92318	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	118	2	2.91668	3.811285	4.70589	5.47942e-4	2.18349e-6	0.00756447	7.71032e-5
chr19	32482832	32482931	17293504	0	+	0.424242	(0.42,0.455]	chr19	1428985	7	UTR3	UTR3:EXON_MRNA	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000588648.7:ENST00000592142.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.94263	3.8112199999999996	4.67981	0.00766873	5.38444e-4	0.0503696	0.00744072
chr7	116506021	116506090	8475388	0	+	0.449275	(0.42,0.455]	chr7	647295	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CAV2	ENSG00000105971.15	ENST00000484871.5:ENST00000485561.5:ENST00000472470.5:ENST00000467035.5:ENST00000477018.5:ENST00000498493.5:ENST00000462876.5:ENST00000478226.5:ENST00000222693.5:ENST00000343213.2:ENST00000495841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.94263	3.8112199999999996	4.67981	0.00766873	5.38444e-4	0.0503696	0.00744072
chr8	123024985	123025015	10056012	0	-	0.433333	(0.42,0.455]	chr8	756465	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.94263	3.8112199999999996	4.67981	0.00766873	5.38444e-4	0.0503696	0.00744072
chr6	67881113	67881206	7784070	0	-	0.397849	(0.39,0.42]	chr6	596219	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1	lncRNA	lncRNA	lncRNA	lncRNA	53	645	2	3.73359	3.8109599999999997	3.88833	5.25113e-12	3.19322e-12	9.83374e-10	6.85486e-10
chr2	222600005	222600083	3196680	0	-	0.397436	(0.39,0.42]	chr2	281666	2	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.19588	3.81086	4.42584	0.00321212	0.00199429	0.0280721	0.0189001
chr10	18681441	18681540	10946980	0	+	0.343434	(0.33,0.36]	chr10	833591	64	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.97606	3.8107949999999997	4.64553	0.00871774	6.69086e-4	0.0558165	0.00820018
chr12	53413793	53413892	12886206	0	+	0.343434	(0.33,0.36]	chr12	1002329	27	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.97606	3.8107949999999997	4.64553	0.00871774	6.69086e-4	0.0558165	0.00820018
chr2	114420124	114420213	2007547	0	+	0.359551	(0.33,0.36]	chr2	190831	1	EXON_SMALL	EXON_SMALL	RNU2-41P	ENSG00000222923.1	ENST00000410991.1	snRNA	snRNA	snRNA	snRNA	1	18	2	2.97606	3.8107949999999997	4.64553	0.00871774	6.69086e-4	0.0558165	0.00820018
chr11	130261222	130261314	12659497	0	-	0.413043	(0.39,0.42]	chr11	982745	5	CDS	CDS:EXON_MRNA	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5:ENST00000530205.5:ENST00000529982.5:ENST00000529348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.68154	3.81075	3.93996	0.00841622	3.05414e-4	0.054565	0.00442973
chr6	137203591	137203685	7988112	0	-	0.414894	(0.39,0.42]	chr6	610807	2	CDS	CDS:UTR3:EXON_MRNA	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000458076.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	3.68154	3.81075	3.93996	0.00841622	3.05414e-4	0.054565	0.00442973
chr1	42176934	42177033	964177	0	-	0.353535	(0.33,0.36]	chr1	101503	5	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.28792	3.8106800000000005	5.33344	0.0239159	1.82386e-5	0.112531	4.52248e-4
chr16	2777015	2777115	15827192	0	-	0.61	(0.59,1]	chr16	1262743	1	CDS_START	CDS_START:CDS:EXON_MRNA	ELOB	ENSG00000103363.15	ENST00000409906.9:ENST00000262306.11:ENST00000409477.1:ENST00000494946.6:ENST00000572954.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.6115	3.8104750000000003	5.00945	0.00584247	0.00149725	0.0422426	0.0159607
chrX	1389532	1389629	18925600	0	-	0.556701	(0.53,0.59]	chrX	1612959	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	238	2	3.80397	3.8104750000000003	3.81698	4.79616e-8	2.01227e-9	3.28347e-6	1.94688e-7
chr17	43014606	43014702	16550637	0	-	0.447917	(0.42,0.455]	chr17	1357992	1	UTR3	UTR3:EXON_MRNA	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	107	2	3.58646	3.81044	4.03442	4.74984e-6	2.14447e-8	1.63715e-4	1.49544e-6
chr12	54234768	54234868	13342874	0	-	0.31	(0.29,0.33]	chr12	1049602	34	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	3.09028	3.810415	4.53055	1.51718e-5	2.01371e-6	3.8775e-4	7.96005e-5
chr15	89195323	89195423	15093441	0	+	0.58	(0.53,0.59]	chr15	1187099	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.62204	3.810115	3.99819	0.0111308	4.3021e-4	0.0665375	0.00620274
chr18	3272998	3273082	16729864	0	+	0.416667	(0.39,0.42]	chr18	1380124	1	CDS	CDS:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.72802	3.8101	4.89218	3.73817e-4	1.6518e-4	0.00520009	0.0029267300000000002
chr19	33440116	33440216	17540834	0	-	0.55	(0.53,0.59]	chr19	1472027	261	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	28	2	2.35511	3.81001	5.26491	0.0445399	6.31437e-5	0.172163	0.00124286
chr12	54234868	54234968	13342875	0	-	0.35	(0.33,0.36]	chr12	1049602	35	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	3.24899	3.80994	4.37089	1.31723e-5	5.4707e-6	3.45454e-4	1.82072e-4
chr10	73242917	73243013	11570202	0	-	0.40625	(0.39,0.42]	chr10	880648	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DNAJC9	ENSG00000213551.7	ENST00000469143.1:ENST00000453189.2:ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	117	2	3.68349	3.8099350000000003	3.93638	1.19079e-7	4.61802e-8	6.49846e-6	3.18288e-6
chr19	54200857	54200909	17390386	0	+	0.557692	(0.53,0.59]	chr19	1447197	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	1077	2	3.25268	3.809895	4.36711	5.02247e-9	1e-12	4.6316e-7	2.25522e-10
chr8	23538486	23538585	9230376	0	+	0.484848	(0.455,0.49]	chr8	706533	67	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.76399	3.80983	4.85567	8.75629e-4	1.2429e-7	0.0106963	6.73437e-6
chr8	47927273	47927353	9817084	0	-	0.45	(0.42,0.455]	chr8	742827	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000541488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.50714	3.80966	5.11218	0.00122903	6.01815e-5	0.0130835	0.00130886
chrX	120626498	120626592	19197522	0	-	0.382979	(0.36,0.39]	chrX	1632210	3	CDS	CDS:EXON_MRNA	C1GALT1C1	ENSG00000171155.8	ENST00000304661.6:ENST00000371313.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.58637	3.8096050000000004	4.03284	5.84377e-4	4.15492e-5	0.00793559	8.8376e-4
chrX	119789907	119789959	19192808	0	-	0.403846	(0.39,0.42]	chrX	1631603	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	132	2	3.80084	3.808985	3.81713	1.39072e-7	1.35377e-8	8.31615e-6	1.00791e-6
chr19	48616725	48616759	17602806	0	-	0.529412	(0.49,0.53]	chr19	1482904	1	CDS	CDS:UTR3:EXON_MRNA	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	11	164	2	3.79584	3.80865	3.82146	4.71827e-8	1.10758e-8	2.9306e-6	9.29835e-7
chr1	32302676	32302733	128214	0	+	0.385965	(0.36,0.39]	chr1	15905	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.58476	3.80848	4.0322	0.00588589	5.01956e-4	0.0427941	0.00653592
chr14	30878907	30878944	14201181	0	+	0.378378	(0.36,0.39]	chr14	1112881	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000553772.5:ENST00000475087.5:ENST00000556908.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000553833.5:ENST00000557065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.58476	3.80848	4.0322	0.00588589	5.01956e-4	0.0427941	0.00653592
chr2	37099806	37099905	2597011	0	-	0.363636	(0.36,0.39]	chr2	233829	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.58476	3.80848	4.0322	0.00588589	5.01956e-4	0.0427941	0.00653592
chr1	434146	434246	821970	0	-	0.58	(0.53,0.59]	chr1	81335	539	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr1	151430753	151430841	1293275	0	-	0.568182	(0.53,0.59]	chr1	129301	2	CDS	CDS:EXON_MRNA:INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000485040.5:ENST00000467287.5:ENST00000533461.5:ENST00000533351.5:ENST00000450842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr11	12261133	12261229	11805469	0	+	0.572917	(0.53,0.59]	chr11	904117	11	EXON_MRNA	EXON_MRNA:INTRON	MICAL2	ENSG00000133816.18	ENST00000683283.1:ENST00000256194.8:ENST00000527546.5:ENST00000675839.1:ENST00000646065.1:ENST00000530691.5:ENST00000525618.5:ENST00000530021.5:ENST00000525444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr15	84805061	84805160	15073443	0	+	0.575758	(0.53,0.59]	chr15	1185821	28	UTR3	UTR3:EXON_MRNA	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr15	90472839	90472895	15100486	0	+	0.535714	(0.53,0.59]	chr15	1188121	1	CDS	CDS:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr16	18500271	18500353	15876268	0	-	0.585366	(0.53,0.59]	chr16	1269074	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr17	8268896	8268996	16109439	0	+	0.54	(0.53,0.59]	chr17	1298321	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFAS	ENSG00000178921.14	ENST00000580356.5:ENST00000314666.11:ENST00000546020.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr2	33021106	33021206	1719023	0	+	0.55	(0.53,0.59]	chr2	168640	3	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr20	62957680	62957780	17863521	0	+	0.58	(0.53,0.59]	chr20	1510486	1	SS5_PROX	SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr3	52401102	52401197	4183060	0	-	0.547368	(0.53,0.59]	chr3	352705	2	UTR3	UTR3:EXON_MRNA	BAP1	ENSG00000163930.10	ENST00000460680.6:ENST00000469613.5:ENST00000296288.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr6	166064937	166065036	7544956	0	+	0.575758	(0.53,0.59]	chr6	575751	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	GAPDHP72	ENSG00000216624.3	ENST00000638093.1:ENST00000636791.1:ENST00000402643.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr9	124518853	124518952	10850448	0	-	0.535354	(0.53,0.59]	chr9	821976	17	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr9	134158881	134158980	10505423	0	+	0.565657	(0.53,0.59]	chr9	794877	10	UTR3	UTR3:EXON_MRNA	WDR5	ENSG00000196363.10	ENST00000358625.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chrX	56565056	56565155	18709758	0	+	0.535354	(0.53,0.59]	chrX	1596564	12	CDS	CDS:EXON_MRNA	UBQLN2	ENSG00000188021.9	ENST00000338222.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chrX	154535936	154535990	19278737	0	-	0.574074	(0.53,0.59]	chrX	1638572	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000433845.1:ENST00000497281.5:ENST00000488434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.61294	3.8084350000000002	4.00393	0.0310038	0.0108084	0.130016	0.064368
chr1	12190956	12191020	47127	0	+	0.53125	(0.53,0.59]	chr1	6089	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1:ENST00000536782.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr1	180908105	180908202	586686	0	+	0.57732000000000006	(0.53,0.59]	chr1	60751	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC02816	ENSG00000225857.5	ENST00000434447.5:ENST00000422858.1	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr1	203714170	203714223	669613	0	+	0.566038	(0.53,0.59]	chr1	67468	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr1	244705689	244705789	804408	0	+	0.59	(0.53,0.59]	chr1	80055	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr10	67811496	67811596	11554905	0	-	0.56	(0.53,0.59]	chr10	878797	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6:ENST00000480963.5:ENST00000339758.7:ENST00000480180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr11	62676561	62676639	12410213	0	-	0.538462	(0.53,0.59]	chr11	961385	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UBXN1	ENSG00000162191.14	ENST00000532904.5:ENST00000294119.6:ENST00000616865.4:ENST00000533000.5:ENST00000301935.10:ENST00000533476.5:ENST00000529640.5:ENST00000525717.5:ENST00000534176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr11	65345993	65346058	11984079	0	+	0.538462	(0.53,0.59]	chr11	920289	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532264.5:ENST00000530973.1:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr11	134192761	134192835	12675316	0	-	0.567568	(0.53,0.59]	chr11	983403	2	CDS	CDS:EXON_MRNA	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000534532.6:ENST00000525964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr12	6560173	6560249	13186933	0	-	0.578947	(0.53,0.59]	chr12	1032187	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOP2:RP5-940J5.10	ENSG00000111641.12:ENSG00000285238.2	ENST00000537442.5:ENST00000620535.4:ENST00000541778.5:ENST00000322166.10:ENST00000399466.6:ENST00000545200.5:ENST00000382421.7:ENST00000644480.2:ENST00000646322.1:ENST00000542015.1:ENST00000544630.1:ENST00000617555.4:ENST00000536506.5:ENST00000537708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr12	6863901	6863973	12714875	0	+	0.583333	(0.53,0.59]	chr12	987108	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	USP5	ENSG00000111667.14	ENST00000389231.9:ENST00000229268.13:ENST00000537267.5:ENST00000541969.1:ENST00000542371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr14	77427050	77427144	14716701	0	-	0.531915	(0.53,0.59]	chr14	1153194	5	UTR3	UTR3:EXON_MRNA	VIPAS39	ENSG00000151445.16	ENST00000553888.5:ENST00000557658.6:ENST00000343765.6:ENST00000327028.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr14	93227134	93227233	14463345	0	+	0.565657	(0.53,0.59]	chr14	1129401	2	UTR3	UTR3:EXON_MRNA	UBR7	ENSG00000012963.15	ENST00000013070.11:ENST00000555329.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr15	22823974	22824056	14810565	0	+	0.560976	(0.53,0.59]	chr15	1162094	4	CDS	CDS:UTR3:EXON_MRNA	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000561183.5:ENST00000337435.9:ENST00000559448.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr16	2708340	2708439	15494777	0	+	0.585859	(0.53,0.59]	chr16	1227755	10	UTR3	UTR3:EXON_MRNA	KCTD5	ENSG00000167977.9	ENST00000301738.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr16	3142318	3142415	15497021	0	+	0.587629	(0.53,0.59]	chr16	1228452	11	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF213	ENSG00000085644.14	ENST00000574902.5:ENST00000396878.8:ENST00000574928.5:ENST00000416391.6:ENST00000576863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr16	28101590	28101688	15903526	0	-	0.530612	(0.53,0.59]	chr16	1273222	3	CDS	CDS:EXON_MRNA	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000568065.5:ENST00000569315.1:ENST00000567038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr17	28700345	28700428	16177224	0	+	0.542169	(0.53,0.59]	chr17	1305464	1	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000581510.1:ENST00000583340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr17	48071534	48071579	16574423	0	-	0.533333	(0.53,0.59]	chr17	1361609	1	CDS	CDS:EXON_MRNA	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9:ENST00000581003.5:ENST00000402583.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr17	49704162	49704226	16582937	0	-	0.546875	(0.53,0.59]	chr17	1362552	2	CDS	CDS:UTR3:EXON_MRNA	SLC35B1	ENSG00000121073.15	ENST00000649906.1:ENST00000240333.12:ENST00000504260.5:ENST00000502406.5:ENST00000507773.6:ENST00000503334.5:ENST00000508520.5:ENST00000502268.5:ENST00000513508.1:ENST00000435059.6:ENST00000514907.5:ENST00000515850.6:ENST00000511763.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr19	10635162	10635255	17225796	0	+	0.580645	(0.53,0.59]	chr19	1418772	1	CDS	CDS:UTR3:EXON_MRNA	SLC44A2	ENSG00000129353.15	ENST00000588465.5:ENST00000407327.8:ENST00000586078.5:ENST00000335757.10:ENST00000588409.1:ENST00000588393.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr19	16553382	16553480	17491591	0	-	0.55102	(0.53,0.59]	chr19	1466498	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000652421.1:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr19	46388552	46388641	17357395	0	+	0.58427	(0.53,0.59]	chr19	1440623	1	CDS	CDS:EXON_MRNA	PPP5C	ENSG00000011485.15	ENST00000012443.9:ENST00000478046.5:ENST00000391919.1:ENST00000487483.6:ENST00000486994.5:ENST00000491003.5:ENST00000492109.6:ENST00000525507.5:ENST00000527623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr2	27040710	27040737	1690677	0	+	0.555556	(0.53,0.59]	chr2	165368	1	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr20	36779820	36779919	17958420	0	-	0.565657	(0.53,0.59]	chr20	1521662	21	UTR3	UTR3:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr3	184140645	184140740	3947845	0	+	0.536842	(0.53,0.59]	chr3	331870	3	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF2B5	ENSG00000145191.15	ENST00000491144.5:ENST00000649814.1:ENST00000648915.2:ENST00000648314.1:ENST00000465218.3:ENST00000647636.1:ENST00000648890.1:ENST00000648682.1:ENST00000647909.1:ENST00000649688.1:ENST00000648599.1:ENST00000481054.5:ENST00000648882.1:ENST00000492226.2:ENST00000648630.1:ENST00000432982.5:ENST00000468748.7:ENST00000648256.1:ENST00000650270.1:ENST00000491008.6:ENST00000648145.1:ENST00000648189.1:ENST00000484154.2:ENST00000649545.1:ENST00000492773.6:ENST00000493740.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr4	67615129	67615228	5452622	0	-	0.535354	(0.53,0.59]	chr4	436027	26	UTR3	UTR3:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr6	26240637	26240737	7101654	0	+	0.57	(0.53,0.59]	chr6	542877	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C6	ENSG00000274618.2	ENST00000244537.6	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr6	33250840	33250940	7668735	0	-	0.59	(0.53,0.59]	chr6	587358	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr6	41932524	41932606	7150481	0	+	0.585366	(0.53,0.59]	chr6	551700	3	CDS	CDS:UTR3:EXON_MRNA	BYSL	ENSG00000112578.10	ENST00000230340.9:ENST00000489290.1:ENST00000372996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr7	76304159	76304173	8343362	0	+	0.571429	(0.53,0.59]	chr7	636386	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000447574.1:ENST00000674650.1:ENST00000675417.1:ENST00000429938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr8	80559658	80559757	9427553	0	+	0.575758	(0.53,0.59]	chr8	719144	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP47	ENSG00000188856.6	ENST00000479228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr9	33068823	33068878	10631406	0	-	0.581818	(0.53,0.59]	chr9	803411	1	CDS	CDS:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr9	136421831	136421913	10512302	0	+	0.536585	(0.53,0.59]	chr9	796219	1	CDS	CDS:EXON_MRNA	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr9	136477428	136477515	10890940	0	-	0.54023	(0.53,0.59]	chr9	827598	5	CDS	CDS:EXON_MRNA	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.61856	3.808375	3.99819	0.0303021	0.0111308	0.129773	0.0665375
chr5	109335680	109335777	6754748	0	-	0.350515	(0.33,0.36]	chr5	518800	11	UTR3	UTR3:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	2.65911	3.80834	4.95757	4.11639e-4	4.47484e-8	0.00604771	2.79784e-6
chr6	26546351	26546448	7102836	0	+	0.28866000000000003	[0,0.29]	chr6	543213	10	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	3.67517	3.808265	3.94136	7.11071e-6	2.4982e-6	2.28404e-4	8.67672e-5
chr19	15829070	15829159	17246523	0	+	0.52809	(0.49,0.53]	chr19	1422743	7	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	3.60476	3.808235	4.01171	4.52633e-4	4.88513e-5	0.00642319	0.00100497
chr6	144095147	144095236	8006754	0	-	0.561798	(0.53,0.59]	chr6	611842	4	UTR3	UTR3:EXON_MRNA	SF3B5	ENSG00000169976.7	ENST00000367569.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.69065	3.80819	3.92573	3.04331e-4	8.62301e-5	0.00472028	0.00160749
chr2	96293315	96293412	2790472	0	-	0.484536	(0.455,0.49]	chr2	248801	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.37552	3.808135	5.24075	0.00134626	4.60487e-9	0.0145759	3.96681e-7
chr4	152521381	152521481	5739799	0	-	0.32	(0.29,0.33]	chr4	453474	316	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.92065	3.807975	4.6953	0.0117842	4.88271e-4	0.0686664	0.00638318
chr6	57048391	57048490	7190678	0	+	0.30303	(0.29,0.33]	chr6	555979	6	INTRON	INTRON	KIAA1586	ENSG00000168116.14	ENST00000545356.5:ENST00000370733.5:ENST00000488682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.92065	3.807975	4.6953	0.0117842	4.88271e-4	0.0686664	0.00638318
chr1	21842769	21842845	890833	0	-	0.75	(0.59,1]	chr1	92322	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.79127	3.807915	3.82456	3.02854e-4	2.1425e-5	0.00472028	5.12077e-4
chr19	58545829	58545896	17413298	0	+	0.567164	(0.53,0.59]	chr19	1451180	2	CDS	CDS:EXON_MRNA:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597968.1	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	2.59529	3.80788	5.02047	3.63905e-4	4.49833e-8	0.00547347	2.80849e-6
chrX	53542442	53542539	19077255	0	-	0.556701	(0.53,0.59]	chrX	1622675	1	CDS	CDS:UTR3:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000463852.1:ENST00000468322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.15403	3.807835	5.46164	0.0118065	2.11519e-5	0.0686664	5.06522e-4
chr20	24968987	24969084	17931305	0	-	0.57732000000000006	(0.53,0.59]	chr20	1517959	2	CDS	CDS:EXON_MRNA	APMAP	ENSG00000101474.12	ENST00000217456.3:ENST00000451442.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.61133	3.8076300000000005	4.00393	0.0108084	4.55298e-4	0.064368	0.00608573
chr1	154255238	154255326	479986	0	+	0.5	(0.49,0.53]	chr1	49681	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000489076.1:ENST00000433615.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	3.49598	3.8075099999999997	4.11904	2.05267e-6	7.50378e-7	7.32173e-5	3.48685e-5
chr12	50474082	50474167	12872162	0	+	0.435294	(0.42,0.455]	chr12	1000189	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000614335.4:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.37329	3.8073099999999998	4.24133	0.00326918	0.00136107	0.0282494	0.0141115
chr3	94076008	94076105	4316399	0	-	0.443299	(0.42,0.455]	chr3	359969	2	EXON_PSEUDO	EXON_PSEUDO	RBBP4P2	ENSG00000242457.1	ENST00000478252.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	3.37329	3.8073099999999998	4.24133	0.00326918	0.00136107	0.0282494	0.0141115
chr8	97805352	97805408	9506748	0	+	0.446429	(0.42,0.455]	chr8	722738	1	CDS	CDS:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7:ENST00000517924.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.37329	3.8073099999999998	4.24133	0.00326918	0.00136107	0.0282494	0.0141115
chr1	91680441	91680541	1163965	0	-	0.42	(0.39,0.42]	chr1	114884	2	UTR3	UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	3.76249	3.80728	3.85207	1.28587e-4	1.04037e-5	0.00241206	2.85665e-4
chr11	71444153	71444253	12444500	0	-	0.61	(0.59,1]	chr11	967006	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000683874.1:ENST00000526780.5:ENST00000525346.5:ENST00000531364.5:ENST00000529990.5:ENST00000527452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	199	2	3.48719	3.8072	4.12721	1.28347e-4	9.21239e-8	0.00241206	5.20155e-6
chr2	27200246	27200340	2569352	0	-	0.510638	(0.49,0.53]	chr2	231180	8	UTR3	UTR3:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.1011	3.8071099999999998	4.51312	0.00156636	5.69237e-4	0.0156889	0.00778538
chr19	23827851	23827950	17276792	0	+	0.545455	(0.53,0.59]	chr19	1427763	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	5	93	2	3.38619	3.80708	4.22797	2.01278e-5	3.82298e-7	4.89797e-4	1.97311e-5
chr1	19165248	19165298	876598	0	-	0.36	(0.33,0.36]	chr1	90265	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.64851	3.80669	4.96487	0.00492353	9.26851e-5	0.0366648	0.00185187
chr17	42315356	42315453	16547435	0	-	0.474227	(0.455,0.49]	chr17	1357253	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	103	2	3.39317	3.8064	4.21963	5.10283e-7	3.43063e-7	2.51556e-5	1.6072e-5
chr14	35310817	35310895	14225568	0	+	0.423077	(0.42,0.455]	chr14	1113842	2	CDS	CDS:UTR3:EXON_MRNA	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1:ENST00000555050.1:ENST00000556221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.7523	3.80634	4.86038	0.0153283	3.34791e-4	0.0828908	0.00472923
chr2	53865478	53865573	2664093	0	-	0.452632	(0.42,0.455]	chr2	238111	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.7523	3.80634	4.86038	0.0153283	3.34791e-4	0.0828908	0.00472923
chr20	57373674	57373738	17836809	0	+	0.421875	(0.42,0.455]	chr20	1508310	1	CDS	CDS:UTR3:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.7523	3.80634	4.86038	0.0153283	3.34791e-4	0.0828908	0.00472923
chr4	75657556	75657625	5473006	0	-	0.42029	(0.42,0.455]	chr4	438409	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000507947.5:ENST00000676493.1:ENST00000676761.1:ENST00000677278.1:ENST00000503660.5:ENST00000678670.1:ENST00000677733.1:ENST00000676926.1:ENST00000502654.5:ENST00000509100.6:ENST00000515457.6:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.7523	3.80634	4.86038	0.0153283	3.34791e-4	0.0828908	0.00472923
chrX	151958577	151958658	19267604	0	-	0.444444	(0.42,0.455]	chrX	1636783	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	GABRE:MIR224	ENSG00000102287.19:ENSG00000284363.1	ENST00000370328.4:ENST00000486255.1:ENST00000441219.5:ENST00000384889.1:ENST00000476016.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	22	2	2.7523	3.80634	4.86038	0.0153283	3.34791e-4	0.0828908	0.00472923
chr2	43973847	43973900	2623834	0	-	0.433962	(0.42,0.455]	chr2	236260	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000682999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.81175	3.8061949999999998	4.80064	0.00227654	3.0479e-4	0.0209546	0.00472028
chr19	49010549	49010611	17368289	0	+	0.612903	(0.59,1]	chr19	1442314	2	CDS	CDS:UTR3:EXON_MRNA	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.14957	3.8061350000000003	5.4627	0.0126053	2.43542e-4	0.0719957	0.00399705
chr17	61982838	61982930	16628615	0	-	0.445652	(0.42,0.455]	chr17	1366889	8	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.81137	3.806005	4.80064	0.0120386	3.0479e-4	0.0700876	0.00472028
chr6	36855713	36855812	7682947	0	-	0.434343	(0.42,0.455]	chr6	589169	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.81137	3.806005	4.80064	0.0120386	3.0479e-4	0.0700876	0.00472028
chr10	96522064	96522163	11640099	0	-	0.444444	(0.42,0.455]	chr10	886559	41	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	3.51538	3.8059950000000002	4.09661	5.28826e-5	2.79795e-5	0.00107799	7.07527e-4
chr10	72096868	72096961	11563916	0	-	0.494624	(0.49,0.53]	chr10	880108	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000534259.1:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	3.23006	3.80599	4.38192	0.00259709	0.00253719	0.0233955	0.0229695
chr9	112220188	112220287	10802884	0	-	0.444444	(0.42,0.455]	chr9	818409	26	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	2.87416	3.80594	4.73772	3.04637e-5	2.72689e-7	6.83179e-4	1.4763e-5
chr8	141254529	141254629	10137305	0	-	0.48	(0.455,0.49]	chr8	761468	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SLC45A4	ENSG00000022567.10	ENST00000517878.6:ENST00000520137.1:ENST00000521804.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.83859	3.805885	4.77318	0.00215336	4.7888e-4	0.0208395	0.00628636
chr1	169470037	169470111	1358145	0	-	0.527027	(0.49,0.53]	chr1	138664	2	CDS	CDS:EXON_MRNA	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.8671	3.80574	4.74438	0.0100489	5.91752e-4	0.0623334	0.00743488
chr14	96855289	96855356	14477736	0	+	0.492537	(0.49,0.53]	chr14	1131014	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.8671	3.80574	4.74438	0.0100489	5.91752e-4	0.0623334	0.00743488
chrX	47199292	47199377	18686737	0	+	0.564706	(0.53,0.59]	chrX	1593185	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000427561.5:ENST00000335972.11:ENST00000442035.5:ENST00000457753.5:ENST00000451702.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.30943	3.80569	4.30195	0.00421989	0.0018255	0.0328662	0.0183913
chr3	10126593	10126692	3302352	0	+	0.424242	(0.42,0.455]	chr3	290648	4	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	29	367	2	3.51715	3.805615	4.09408	6.09571e-10	1.68877e-11	6.74709e-8	3.0304e-9
chr11	62515994	62516088	12408591	0	-	0.340426	(0.33,0.36]	chr11	960899	2	UTR3	UTR3:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000525875.1:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	3.4399	3.80556	4.17122	1.29517e-4	1.72402e-5	0.00242147	4.33531e-4
chr11	763431	763519	11758789	0	+	0.534091	(0.53,0.59]	chr11	898429	2	CDS	CDS:UTR3:EXON_MRNA	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	133	2	3.10062	3.8054900000000003	4.51036	3.70432e-5	2.60079e-9	8.91807e-4	2.42742e-7
chr17	7240759	7240853	16429075	0	-	0.574468	(0.53,0.59]	chr17	1339315	9	UTR3	UTR3:EXON_MRNA	GABARAP:CTD-2545G14.7	ENSG00000170296.10:ENSG00000262526.2	ENST00000302386.10:ENST00000577035.5:ENST00000570760.2:ENST00000570856.1:ENST00000571129.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	3.12943	3.80547	4.48151	4.81557e-4	2.61211e-6	0.00677016	8.99269e-5
chr1	236550801	236550901	1568179	0	-	0.36	(0.33,0.36]	chr1	156951	19	UTR3	UTR3:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.88494	3.80546	4.72598	6.89291e-4	3.063e-7	0.00876781	1.45748e-5
chr6	163563494	163563569	7540755	0	+	0.56	(0.53,0.59]	chr6	575634	2	CDS	CDS:UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	128	2	3.65241	3.8050800000000002	3.95775	3.10117e-6	5.42868e-8	1.14992e-4	3.31693e-6
chr1	202942024	202942121	1453192	0	-	0.474227	(0.455,0.49]	chr1	146057	1	CDS	CDS:UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10:ENST00000367254.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	3.79735	3.8050499999999996	3.81275	0.0138827	9.19204e-7	0.0760883	3.72813e-5
chr17	41758398	41758458	16543013	0	-	0.583333	(0.53,0.59]	chr17	1356275	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000585793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	2.56665	3.804815	5.04298	0.00209536	1.91383e-4	0.0196588	0.0032874
chr12	113389691	113389788	13101751	0	+	0.402062	(0.39,0.42]	chr12	1022448	12	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	3.51438	3.80478	4.09518	8.89542e-6	1.14877e-8	2.7461e-4	8.72413e-7
chr5	115913687	115913785	6161638	0	+	0.377551	(0.36,0.39]	chr5	481126	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AP3S1	ENSG00000177879.17	ENST00000316788.12:ENST00000395548.6:ENST00000505423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	66	2	3.74315	3.8047050000000002	3.86626	6.18583e-6	1.37919e-6	2.02643e-4	5.23299e-5
chr4	94290217	94290315	4982813	0	+	0.397959	(0.39,0.42]	chr4	407331	8	UTR3	UTR3:EXON_MRNA	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.32811	3.8046949999999997	4.28128	0.00342611	0.00182819	0.0283456	0.0183913
chr8	90042727	90042800	9473573	0	+	0.410959	(0.39,0.42]	chr8	720760	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000523447.5:ENST00000517597.5:ENST00000220764.7:ENST00000522161.5:ENST00000517301.5:ENST00000524332.1:ENST00000520148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.32811	3.8046949999999997	4.28128	0.00342611	0.00182819	0.0283456	0.0183913
chr10	95606669	95606761	11632868	0	-	0.478261	(0.455,0.49]	chr10	885982	9	UTR3	UTR3:EXON_MRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.96925	3.8045150000000003	4.63978	0.00698725	6.94032e-4	0.0473262	0.00876781
chr7	135593123	135593192	8552756	0	+	0.463768	(0.455,0.49]	chr7	652741	3	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.96925	3.8045150000000003	4.63978	0.00698725	6.94032e-4	0.0473262	0.00876781
chr9	131412225	131412325	10497920	0	+	0.42	(0.39,0.42]	chr9	793465	176	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.11549	3.8043649999999998	4.49324	0.00403491	0.00108192	0.032143	0.0124943
chr18	46084503	46084578	17103796	0	-	0.453333	(0.42,0.455]	chr18	1404352	1	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000587902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	3.78199	3.804285	3.82658	1.02596e-6	7.38339e-7	4.51911e-5	3.082e-5
chr10	80518872	80518972	11152034	0	+	0.55	(0.53,0.59]	chr10	847928	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	1.86855	3.8040599999999998	5.73957	0.0189167	3.90343e-6	0.0934721	1.26306e-4
chr4	102801506	102801559	5563972	0	-	0.301887	(0.29,0.33]	chr4	444367	2	CDS	CDS:UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	3.61323	3.8038800000000004	3.99453	8.03892e-5	3.91773e-6	0.00167226	1.26663e-4
chr15	74926861	74926887	15376332	0	-	0.346154	(0.33,0.36]	chr15	1215558	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	3.66756	3.8037650000000003	3.93997	9.37165e-5	1.2855e-7	0.00186979	6.93824e-6
chr5	139683589	139683687	6250960	0	+	0.397959	(0.39,0.42]	chr5	487158	8	UTR3	UTR3:EXON_MRNA	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.0503	3.803765	4.55723	0.00570576	0.00117753	0.0424438	0.0127276
chr14	81177240	81177339	14730345	0	-	0.30303	(0.29,0.33]	chr14	1153987	19	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.42047	3.803455	4.18644	1.8012e-4	1.56826e-5	0.003142	3.99464e-4
chr19	10294560	10294640	17224737	0	+	0.6375	(0.59,1]	chr19	1418556	3	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	3.23348	3.8033550000000003	4.37323	0.00990413	0.00352837	0.061536	0.0298518
chrX	53546513	53546592	19077303	0	-	0.556962	(0.53,0.59]	chrX	1622696	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.64837	3.8033099999999997	4.95825	0.0199467	2.87508e-4	0.0984041	0.00457439
chrX	55024805	55024840	19084719	0	-	0.571429	(0.53,0.59]	chrX	1623776	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	3.29875	3.803255	4.30776	0.00407289	0.00191422	0.0324137	0.018324
chr10	84153004	84153098	11164629	0	+	0.276596	[0,0.29]	chr10	848162	8	UTR3	UTR3:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.0735	3.80301	4.53252	0.00785095	1.35309e-6	0.0520241	5.16241e-5
chr10	59790632	59790731	11517205	0	-	0.383838	(0.36,0.39]	chr10	877718	20	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.6181	3.802765	4.98743	0.00176908	8.82225e-5	0.0172426	0.00178337
chr4	83049165	83049241	4927876	0	+	0.460526	(0.455,0.49]	chr4	404960	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	COPS4	ENSG00000138663.9	ENST00000509093.5:ENST00000511891.5:ENST00000509317.5:ENST00000510801.5:ENST00000264389.7:ENST00000506443.5:ENST00000507376.1:ENST00000503682.5:ENST00000511653.1:ENST00000511708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.30139	3.80265	5.30391	0.0530131	3.12735e-5	0.195536	6.97306e-4
chr1	42842780	42842868	162248	0	+	0.556818	(0.53,0.59]	chr1	20420	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	55	2	2.90978	3.8026150000000003	4.69545	0.00857883	5.62788e-7	0.0552386	2.45035e-5
chr1	21855374	21855446	890986	0	-	0.708333	(0.59,1]	chr1	92404	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	3.23348	3.802455	4.37143	0.00352837	1.58503e-5	0.0298518	4.03494e-4
chr11	74254305	74254404	12016986	0	+	0.434343	(0.42,0.455]	chr11	926524	9	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	111	2	3.55651	3.802455	4.0484	3.70707e-7	1.06984e-7	1.71165e-5	6.66452e-6
chr3	49026518	49026609	4171695	0	-	0.406593	(0.39,0.42]	chr3	350227	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	3.45983	3.8023000000000002	4.14477	8.68166e-5	2.09513e-5	0.00177086	5.04211e-4
chr19	48383022	48383112	17601666	0	-	0.322222	(0.29,0.33]	chr19	1482708	6	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	13	123	2	3.4293	3.80227	4.17524	3.84377e-8	7.40981e-9	2.4624e-6	6.57201e-7
chr17	48578129	48578219	16578114	0	-	0.777778	(0.59,1]	chr17	1361847	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HOXB3:HOXB4	ENSG00000120093.12:ENSG00000182742.6	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000552000.2:ENST00000332503.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.06258	3.802205	4.54183	0.0070583	0.00616167	0.0478044	0.0438642
chr17	43241370	43241467	16552333	0	-	0.670103	(0.59,1]	chr17	1358301	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.19052	3.8018849999999995	5.41325	0.0237927	3.01546e-4	0.109413	0.00472028
chr16	28826314	28826390	15620274	0	+	0.407895	(0.39,0.42]	chr16	1238414	2	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000562867.5:ENST00000568266.5:ENST00000564656.5:ENST00000565971.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	63	2	3.38738	3.80169	4.216	1.35138e-4	3.47646e-7	0.0025017	1.62117e-5
chr12	49186731	49186782	13324036	0	-	0.666667	(0.59,1]	chr12	1045773	1	CDS	CDS:UTR5:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1:ENST00000548363.1:ENST00000550254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	104	2	3.6986	3.801515	3.90443	4.89626e-4	1.3015e-5	0.00639399	3.74447e-4
chrX	71294301	71294377	18730827	0	+	0.5	(0.49,0.53]	chrX	1598418	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	64	2	3.51228	3.801385	4.09049	2.9452e-5	7.99738e-6	7.32348e-4	2.28719e-4
chr15	68187591	68187663	14994995	0	+	0.458333	(0.455,0.49]	chr15	1178735	1	CDS	CDS:UTR3:EXON_MRNA	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.40009	3.8009899999999996	4.20189	0.00397662	0.00120619	0.0322851	0.0129255
chr16	387146	387242	15481402	0	+	0.489583	(0.455,0.49]	chr16	1224390	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	Z97634.3	ENSG00000236829.9	ENST00000412293.5:ENST00000457760.1:ENST00000435229.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	23	2	3.40009	3.8009899999999996	4.20189	0.00397662	0.00120619	0.0322851	0.0129255
chr19	29207547	29207647	17528315	0	-	0.48	(0.455,0.49]	chr19	1471069	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UQCRFS1	ENSG00000169021.6	ENST00000304863.6	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.40009	3.8009899999999996	4.20189	0.00397662	0.00120619	0.0322851	0.0129255
chr5	176389497	176389585	6401941	0	+	0.590909	(0.59,1]	chr5	497305	1	UTR3	UTR3:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.46484	3.800815	5.13679	0.00383661	9.28022e-4	0.0310411	0.0111748
chr5	139283800	139283900	6248618	0	+	0.42	(0.39,0.42]	chr5	486932	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	27	2	2.59744	3.800675	5.00391	0.00572981	9.12714e-5	0.0417368	0.00182992
chr5	21883830	21883926	5904903	0	+	0.458333	(0.455,0.49]	chr5	463295	14	EXON_PSEUDO	EXON_PSEUDO	HSPD1P1	ENSG00000213430.6	ENST00000503199.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	29	2	2.84079	3.800635	4.76048	0.00201021	3.99985e-4	0.0190112	0.00588767
chr10	70752094	70752160	11102265	0	+	0.606061	(0.59,1]	chr10	844550	1	CDS	CDS:EXON_MRNA	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.80637	3.8004350000000002	4.7945	0.0031766	0.00274489	0.0279054	0.0238522
chr5	96803486	96803571	6721395	0	-	0.647059	(0.59,1]	chr5	517485	2	CDS	CDS:UTR5:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5:ENST00000508227.5:ENST00000507154.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.80637	3.8004350000000002	4.7945	0.0031766	0.00274489	0.0279054	0.0238522
chr15	64072655	64072747	15339047	0	-	0.304348	(0.29,0.33]	chr15	1210824	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000558779.1:ENST00000380290.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.48001	3.80034	4.12067	0.00126219	2.40819e-5	0.013837	5.6648e-4
chr1	230279556	230279655	749802	0	+	0.525253	(0.49,0.53]	chr1	76088	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.92082	3.80027	4.67972	0.00827037	6.94757e-4	0.0534766	0.00876781
chr6	32180008	32180067	7118660	0	+	0.508475	(0.49,0.53]	chr6	547009	1	CDS	CDS:EXON_MRNA:PRIMIRNA	RNF5:MIR6833	ENSG00000204308.8:ENSG00000277264.1	ENST00000375094.4:ENST00000620680.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	23	2	2.92082	3.80027	4.67972	0.00827037	6.94757e-4	0.0534766	0.00876781
chr2	235597720	235597820	2444554	0	+	0.64	(0.59,1]	chr2	220921	728	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.17616	3.8001899999999997	4.42422	0.00434232	1.17291e-5	0.0339139	3.12994e-4
chr14	94053062	94053127	14775161	0	-	0.492308	(0.49,0.53]	chr14	1157276	2	CDS	CDS:EXON_MRNA:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000553451.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1:ENST00000556635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	3.04107	3.80018	4.55929	0.00533879	0.00116196	0.0392268	0.0130851
chr19	15397214	15397280	17486383	0	-	0.515152	(0.49,0.53]	chr19	1465527	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	3.04107	3.80018	4.55929	0.00533879	0.00116196	0.0392268	0.0130851
chr1	1541868	1541966	827860	0	-	0.367347	(0.36,0.39]	chr1	82516	3	UTR3	UTR3:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	73	2	2.99086	3.8001750000000003	4.60949	3.25198e-4	1.11579e-8	0.00500369	8.51066e-7
chr12	119679932	119680001	13114510	0	+	0.507246	(0.49,0.53]	chr12	1023555	1	CDS	CDS:EXON_MRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1:ENST00000542698.1:ENST00000538271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	3.76703	3.80011	3.83319	1.34601e-4	1.02216e-5	0.00249552	2.82175e-4
chr7	131242670	131242751	8532999	0	+	0.518519	(0.49,0.53]	chr7	651592	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	MKLN1:AC009362.2	ENSG00000128585.18:ENSG00000233287.1	ENST00000421797.6:ENST00000416992.6:ENST00000427253.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	54	2	3.76703	3.80011	3.83319	1.34601e-4	1.02216e-5	0.00249552	2.82175e-4
chr2	27215692	27215753	1691454	0	+	0.42623	(0.42,0.455]	chr2	165625	2	CDS	CDS:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000405489.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.91373	3.79983	4.68593	0.00892357	4.87807e-7	0.0567495	2.16171e-5
chr9	129498864	129498964	10485889	0	+	0.49	(0.455,0.49]	chr9	791609	4	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	24	2	2.35214	3.79969	5.24724	0.0455621	3.09759e-5	0.168044	7.62166e-4
chr11	77886412	77886512	12033761	0	+	0.46	(0.455,0.49]	chr11	928087	11	INTRON	INTRON	AAMDC	ENSG00000087884.14	ENST00000532481.5:ENST00000526164.5:ENST00000527134.5:ENST00000304716.12:ENST00000630098.2:ENST00000529666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	515	2	2.52474	3.799545	5.07435	4.67072e-6	1e-12	1.61896e-4	2.25522e-10
chr1	53825866	53825936	1026161	0	-	0.414286	(0.39,0.42]	chr1	106425	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	3.19588	3.799535	4.40319	0.00321212	3.72195e-6	0.0280721	1.21063e-4
chr1	87104596	87104696	341413	0	+	0.42	(0.39,0.42]	chr1	33631	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.19588	3.799535	4.40319	0.00321212	3.72195e-6	0.0280721	1.21063e-4
chr3	47420930	47420991	4160750	0	-	0.491803	(0.49,0.53]	chr3	348132	1	CDS	CDS:UTR3:EXON_MRNA	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5:ENST00000465628.1:ENST00000468965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.11783	3.799505	5.48118	0.0142725	1.24248e-5	0.0780078	3.28918e-4
chr2	42351318	42351359	2616605	0	-	0.585366	(0.53,0.59]	chr2	235510	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	COX7A2L	ENSG00000115944.15	ENST00000468711.5:ENST00000378669.5:ENST00000234301.3:ENST00000482463.5:ENST00000464443.5:ENST00000607768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.92962	3.79949	4.66936	0.0012954	0.00103174	0.0136936	0.0121443
chr22	20950918	20951015	18300192	0	+	0.443299	(0.42,0.455]	chr22	1553647	12	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	384	2	3.78128	3.799365	3.81745	2.11339e-10	4.52157e-11	2.93086e-8	6.71846e-9
chr3	47662505	47662592	4162518	0	-	0.45977	(0.455,0.49]	chr3	348362	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.83792	3.7992	4.76048	0.0110512	3.99985e-4	0.0665375	0.00588767
chr6	109376073	109376112	7886745	0	-	0.538462	(0.53,0.59]	chr6	603703	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	178	2	3.62314	3.79905	3.97496	8.40719e-7	3.99452e-9	3.83414e-5	3.50772e-7
chr5	139026800	139026896	6863542	0	-	0.416667	(0.39,0.42]	chr5	525315	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000503732.1:ENST00000505945.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.70591	3.798935	4.89196	0.0185716	2.62166e-4	0.0932453	0.0039188
chr12	98547858	98547957	13036864	0	+	0.333333	(0.33,0.36]	chr12	1014988	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000548223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	3.42657	3.798895	4.17122	2.3079e-5	1.72402e-5	6.0378e-4	4.33531e-4
chr6	73521012	73521110	7796103	0	-	0.540816	(0.53,0.59]	chr6	597149	11	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	288	4956	2	3.36807	3.7988850000000003	4.2297	7.95646e-11	1e-12	1.21929e-8	2.25522e-10
chr7	12389126	12389203	8683575	0	-	0.441558	(0.42,0.455]	chr7	664065	1	CDS	CDS:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	85	2	3.22871	3.7988600000000003	4.36901	1.56448e-5	1.02856e-7	4.38216e-4	5.71137e-6
chr1	148171658	148171757	457144	0	+	0.474747	(0.455,0.49]	chr1	45544	72	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	3.08961	3.7988299999999997	4.50805	0.00445157	0.00122223	0.0340751	0.0135383
chr1	247230521	247230618	813744	0	+	0.474227	(0.455,0.49]	chr1	80509	7	EXON_PSEUDO	EXON_PSEUDO	RP11-488L18.1	ENSG00000214144.3	ENST00000397642.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.08961	3.7988299999999997	4.50805	0.00445157	0.00122223	0.0340751	0.0135383
chr14	102042012	102042059	14495814	0	+	0.489362	(0.455,0.49]	chr14	1133239	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1:ENST00000556499.3:ENST00000644888.1:ENST00000644239.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.08961	3.7988299999999997	4.50805	0.00445157	0.00122223	0.0340751	0.0135383
chr1	20661196	20661250	882347	0	-	0.555556	(0.53,0.59]	chr1	91156	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1:ENST00000477229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	3.46612	3.79877	4.13142	1.16467e-5	8.11888e-7	3.43116e-4	3.35153e-5
chr3	47413085	47413185	3456422	0	+	0.63	(0.59,1]	chr3	301322	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PTPN23	ENSG00000076201.16	ENST00000602307.5:ENST00000265562.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	3.36223	3.7987649999999995	4.2353	0.0165254	0.00203572	0.0873033	0.0192213
chr2	119263147	119263238	2024538	0	+	0.637363	(0.59,1]	chr2	191406	2	CDS	CDS:UTR3:EXON_MRNA	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.77418	3.7987149999999996	4.82325	0.0160729	0.002381	0.0860154	0.0216895
chr18	23545054	23545149	17037405	0	-	0.336842	(0.33,0.36]	chr18	1400583	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.2582	3.7985800000000003	4.33896	0.00230915	0.00182033	0.0211205	0.0183913
chr4	82867235	82867316	5496931	0	-	0.469136	(0.455,0.49]	chr4	440275	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	43	2	3.12843	3.798505	4.46858	0.00392855	2.38087e-6	0.0322851	8.3081e-5
chr12	69599862	69599933	12943561	0	+	0.43662	(0.42,0.455]	chr12	1009017	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000550653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	103	2	3.70693	3.798475	3.89002	1.87156e-6	7.78698e-8	7.50901e-5	4.50836e-6
chr2	68174802	68174897	1869174	0	+	0.389474	(0.36,0.39]	chr2	176648	1	UTR3	UTR3:EXON_MRNA	PNO1	ENSG00000115946.8	ENST00000263657.7:ENST00000488728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.69835	3.7983599999999997	3.89837	3.2708e-4	9.25116e-5	0.00502339	0.00169222
chr3	196064308	196064368	4663299	0	-	0.433333	(0.42,0.455]	chr3	385597	1	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000464368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	238	2	3.79581	3.79832	3.80083	1.39093e-9	8.68221e-10	1.4078e-7	1.01539e-7
chr12	104265748	104265836	13058278	0	+	0.625	(0.59,1]	chr12	1017573	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	TXNRD1:RPL18AP3	ENSG00000198431.16:ENSG00000213442.5	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1:ENST00000462885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	15	426	2	3.6497	3.79824	3.94678	9.2622e-8	7.38407e-8	5.22883e-6	4.77306e-6
chr2	135724192	135724292	2082951	0	+	0.36	(0.33,0.36]	chr2	195395	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.51887	3.7982050000000003	5.07754	0.0358636	7.92926e-5	0.147298	0.00150306
chr21	34096080	34096178	18104977	0	+	0.428571	(0.42,0.455]	chr21	1534981	9	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	33	2	3.35491	3.79812	4.24133	0.00326918	1.39104e-4	0.0282494	0.00235518
chr1	41012275	41012371	156734	0	+	0.46875	(0.455,0.49]	chr1	19751	22	UTR3	UTR3:EXON_MRNA	CTPS1	ENSG00000171793.16	ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.1:ENST00000649124.1:ENST00000498694.2:ENST00000648801.1:ENST00000650634.1:ENST00000486889.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.57525	3.7978250000000005	4.0204	0.00736097	5.24878e-4	0.0490627	0.00677371
chr8	124999303	124999403	9595354	0	+	0.54	(0.53,0.59]	chr8	727885	8	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	3.55018	3.79773	4.04528	4.28524e-5	6.52276e-6	9.98851e-4	1.94038e-4
chrX	55020319	55020411	19084670	0	-	0.543478	(0.53,0.59]	chrX	1623759	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	117	2	2.99553	3.797675	4.59982	2.91769e-5	1.85529e-8	7.27239e-4	1.32775e-6
chr5	10381799	10381871	5874982	0	+	0.402778	(0.39,0.42]	chr5	461923	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	3.14527	3.79751	4.44975	5.33048e-4	2.67778e-6	0.00742114	9.19863e-5
chr1	207767012	207767103	689936	0	+	0.318681	(0.29,0.33]	chr1	70081	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	184	2	3.73162	3.797395	3.86317	1.27148e-9	5.27228e-10	1.40745e-7	5.95469e-8
chr19	49430518	49430618	17606398	0	-	0.72	(0.59,1]	chr19	1483929	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.24972	3.797295	4.34487	0.0123678	0.00314037	0.0705839	0.0264943
chr7	30628559	30628587	8203853	0	+	0.357143	(0.33,0.36]	chr7	625855	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.90872	3.79716	4.6856	4.00944e-4	3.92435e-4	0.00583618	0.00548902
chr12	52949804	52949882	13337457	0	-	0.525641	(0.49,0.53]	chr12	1048666	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000546897.5:ENST00000546826.5:ENST00000619952.2:ENST00000549198.1:ENST00000551318.1:ENST00000546921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	2.78773	3.797015	4.8063	0.00257389	1.96248e-7	0.0235767	9.99962e-6
chr2	65205694	65205792	1853947	0	+	0.408163	(0.39,0.42]	chr2	175914	7	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	131	2	3.22226	3.79701	4.37176	1.81166e-7	9.02539e-8	9.35545e-6	5.72301e-6
chr11	32589604	32589641	11898177	0	+	0.405405	(0.39,0.42]	chr11	908906	1	CDS	CDS:UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000526267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.44923	3.797	4.14477	0.00105208	2.09513e-5	0.0123035	5.04211e-4
chr2	130182626	130182700	2061134	0	+	0.621622	(0.59,1]	chr2	193508	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MZT2B	ENSG00000152082.15	ENST00000425361.5:ENST00000457492.5:ENST00000651060.1:ENST00000409255.1:ENST00000281871.11:ENST00000455239.1:ENST00000485869.1:ENST00000480182.1:ENST00000491178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.84944	3.7966100000000003	4.74378	0.0128238	0.00312942	0.0719798	0.0264364
chr5	138467132	138467227	6244785	0	+	0.652632	(0.59,1]	chr5	486656	5	CDS	CDS:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.84944	3.7966100000000003	4.74378	0.0128238	0.00312942	0.0719798	0.0264364
chr3	150572147	150572243	3807846	0	+	0.395833	(0.39,0.42]	chr3	325029	3	CDS	CDS:UTR3:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000477551.5:ENST00000465535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	75	2	3.59464	3.796495	3.99835	3.6617e-5	1.74611e-7	8.82767e-4	9.04749e-6
chr20	62387610	62387661	17861413	0	+	0.568627	(0.53,0.59]	chr20	1510052	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6:ENST00000370592.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	241	2	3.35839	3.79646	4.23453	3.31027e-8	4.5409e-9	2.16744e-6	4.25515e-7
chrX	30854983	30855079	19012424	0	-	0.4375	(0.42,0.455]	chrX	1617576	10	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.97508	3.79611	5.61714	0.0147202	4.98624e-6	0.0802571	1.54467e-4
chr12	22643848	22643935	12785825	0	+	0.436782	(0.42,0.455]	chr12	993004	2	CDS	CDS:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000335148.8:ENST00000672951.1:ENST00000266517.9:ENST00000538218.2:ENST00000673496.1:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.5451	3.7959500000000004	5.0468	0.00112955	1.33918e-4	0.0128875	0.00229039
chr15	59105206	59105268	14959792	0	+	0.693548	(0.59,1]	chr15	1175675	2	UTR5	UTR5:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000561077.1:ENST00000288207.7:ENST00000559622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.33806	3.7959300000000002	5.2538	0.00632881	5.85045e-4	0.0448545	0.00793559
chr5	140567365	140567462	6255379	0	+	0.680412	(0.59,1]	chr5	487695	2	CDS	CDS:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.11647	3.79582	4.47517	0.00735659	0.00535979	0.0491503	0.0406564
chr19	41332119	41332200	17568501	0	-	0.592593	(0.59,1]	chr19	1476885	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.11647	3.7958100000000004	4.47515	0.00535979	8.73507e-6	0.0406564	0.00024628300000000003
chr16	22534713	22534811	15591473	0	+	0.55102	(0.53,0.59]	chr16	1236299	11	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.63316	3.795705	4.95825	0.00474401	2.87508e-4	0.0361423	0.00457439
chr12	64420069	64420161	12921817	0	+	0.380435	(0.36,0.39]	chr12	1007024	1	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.85784	3.79565	4.73346	0.00191736	3.2963e-4	0.0183299	0.00504024
chr10	133365975	133366035	11754762	0	-	0.366667	(0.36,0.39]	chr10	897298	1	CDS	CDS:EXON_MRNA	ECHS1	ENSG00000127884.5	ENST00000368547.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.38564	3.7956000000000003	5.20556	0.0476159	4.46552e-5	0.17993	9.34801e-4
chr4	56502339	56502435	4849152	0	+	0.28125	[0,0.29]	chr4	399579	6	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	3.28583	3.79548	4.30513	0.00346525	7.08235e-6	0.0293796	2.0848e-4
chr11	119052089	119052172	12626510	0	-	0.626506	(0.59,1]	chr11	979803	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	177	2	2.70668	3.7954549999999996	4.88423	0.0014458	1.57899e-8	0.0155288	1.14917e-6
chr5	134197574	134197672	6844110	0	-	0.367347	(0.36,0.39]	chr5	523666	34	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000472253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	3.60045	3.7952250000000003	3.99	6.1616e-5	4.13757e-6	0.00133408	1.32555e-4
chr19	43771999	43772088	17580599	0	-	0.595506	(0.59,1]	chr19	1479111	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000648053.1:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	102	2	3.66704	3.79512	3.9232	6.16458e-4	9.85469e-6	0.00822794	2.72997e-4
chr22	21623245	21623344	18303194	0	+	0.575758	(0.53,0.59]	chr22	1554195	17	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.3186	3.794735	5.27087	0.00299541	5.9416e-5	0.0256157	0.00130151
chr7	12380567	12380650	8683484	0	-	0.409639	(0.39,0.42]	chr7	664048	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	80	2	3.55361	3.79426	4.03491	1.51324e-6	1.26646e-6	6.2379e-5	4.89488e-5
chr19	49869523	49869621	17607881	0	-	0.510204	(0.49,0.53]	chr19	1484407	6	UTR3	UTR3:EXON_MRNA:INTRON	PNKP:AKT1S1	ENSG00000039650.12:ENSG00000204673.11	ENST00000629179.1:ENST00000391834.6:ENST00000391833.5:ENST00000344175.10:ENST00000391832.7:ENST00000391835.1:ENST00000391831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.38935	3.7940899999999997	5.19883	0.00488689	6.30063e-5	0.0376157	0.00124286
chr1	200863979	200864065	656213	0	+	0.406977	(0.39,0.42]	chr1	65544	3	EXON_PSEUDO	EXON_PSEUDO	RPL34P6	ENSG00000231333.2	ENST00000432390.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.94917	3.7939999999999996	4.63883	0.00121791	5.68159e-4	0.0130188	0.0077844
chr6	31860041	31860106	7662782	0	-	0.553846	(0.53,0.59]	chr6	585392	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	3.76914	3.79397	3.8188	1.54941e-4	1.07544e-5	0.0028049	2.9314e-4
chr1	109235976	109236041	398094	0	+	0.4	(0.39,0.42]	chr1	38587	1	CDS	CDS:EXON_MRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.70591	3.7939549999999995	4.882	0.0185716	9.72017e-8	0.0932453	5.44683e-6
chr3	179574369	179574467	3928553	0	+	0.408163	(0.39,0.42]	chr3	330171	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000494843.5:ENST00000487978.5:ENST00000486471.1:ENST00000467383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	3.56097	3.79392	4.02687	6.12149e-4	4.35816e-5	0.00818575	0.00091744700000000005
chr11	9433720	9433783	11792765	0	+	0.412698	(0.39,0.42]	chr11	902900	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.6576	3.793805	3.93001	2.40332e-5	3.15326e-6	6.22273e-4	1.05314e-4
chr5	163442465	163442565	6343413	0	+	0.42	(0.39,0.42]	chr5	494006	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000514367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	188	2	3.18554	3.7936500000000004	4.40176	4.13943e-8	3.9005e-9	2.61436e-6	3.73892e-7
chr21	42848433	42848532	18270840	0	-	0.666667	(0.59,1]	chr21	1549336	48	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	3.44238	3.793605	4.14483	0.0183207	0.00158239	0.0945306	0.0167793
chr9	120817807	120817905	10833867	0	-	0.408163	(0.39,0.42]	chr9	820467	19	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.34349	3.79359	5.24369	0.0169272	4.15285e-5	0.0890655	8.8376e-4
chr7	75422305	75422405	8858976	0	-	0.61	(0.59,1]	chr7	676969	9	CDS	CDS:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	3.2366	3.793405	4.35021	4.06803e-4	2.10898e-5	0.00552995	5.6023e-4
chr11	34456740	34456817	11906188	0	+	0.519481	(0.49,0.53]	chr11	909803	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	91	2	3.4677	3.79337	4.11904	2.55367e-6	7.50378e-7	8.83735e-5	3.48685e-5
chr11	204112	204211	12225505	0	-	0.50505	(0.49,0.53]	chr11	943038	13	UTR3	UTR3:EXON_MRNA:INTRON	BET1L	ENSG00000177951.17	ENST00000410108.5:ENST00000325147.13:ENST00000382762.7	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.19229	3.7931399999999997	5.39399	0.00311904	1.71804e-5	0.0264364	4.72485e-4
chr7	43639581	43639681	8793916	0	-	0.48	(0.455,0.49]	chr7	670393	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000488813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	3.3841	3.792995	4.20189	0.00397662	1.17485e-4	0.0322851	0.00206023
chr21	45525887	45525958	18279167	0	-	0.492958	(0.49,0.53]	chr21	1550601	2	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.38683	3.79283	5.19883	0.012654	6.30063e-5	0.0718207	0.00124286
chr1	87106890	87106989	341436	0	+	0.454545	(0.42,0.455]	chr1	33632	23	UTR3	UTR3:EXON_MRNA:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.19078	3.79273	4.39468	0.00310864	0.00240483	0.0274272	0.0217482
chr11	7992094	7992163	11789462	0	+	0.376812	(0.36,0.39]	chr11	902507	1	CDS	CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	99	2	3.62264	3.79261	3.96258	8.733e-7	3.68475e-8	3.95338e-5	2.37799e-6
chr7	10541398	10541498	8675807	0	-	0.42	(0.39,0.42]	chr7	663698	883	INTRON	INTRON	MGC4859	ENSG00000283117.1	ENST00000634803.1	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	3.73294	3.7925050000000002	3.85207	0.0190864	1.28587e-4	0.0958835	0.00241206
chr17	41873887	41873965	16543816	0	-	0.564103	(0.53,0.59]	chr17	1356478	2	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	3.55001	3.7922700000000003	4.03453	6.11776e-4	4.6e-5	0.00818575	9.56296e-4
chr1	110896652	110896733	405607	0	+	0.530864	(0.53,0.59]	chr1	39829	1	CDS	CDS:EXON_MRNA:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	169	2	3.45969	3.792215	4.12474	3.76967e-7	1.22868e-8	1.73504e-5	1.01118e-6
chr2	54668965	54669065	1819446	0	+	0.43	(0.42,0.455]	chr2	173665	5	UTR3	UTR3:EXON_MRNA	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000467371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.70451	3.791865	3.87922	2.72131e-4	1.04705e-4	0.00404713	0.0020295
chr5	176389673	176389761	6401943	0	+	0.363636	(0.36,0.39]	chr5	497305	3	UTR3	UTR3:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	3.2928	3.791715	4.29063	2.65442e-4	1.8198e-7	0.004287	9.38083e-6
chr6	107924874	107924932	7882117	0	-	0.37931	(0.36,0.39]	chr6	603438	2	CDS	CDS:UTR3:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000429168.1:ENST00000484803.5:ENST00000446496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	3.2928	3.791715	4.29063	2.65442e-4	1.8198e-7	0.004287	9.38083e-6
chr6	26281291	26281390	7647336	0	-	0.313131	(0.29,0.33]	chr6	582588	5	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	28	2	3.76009	3.791445	3.8228	3.08518e-4	1.45428e-4	0.00476847	0.00244094
chrX	120077552	120077621	19194116	0	-	0.594203	(0.59,1]	chrX	1631808	1	UTR5	UTR5:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.09078	3.79131	5.49184	0.00582429	1.61513e-4	0.0427941	0.00265627
chr2	131078101	131078200	2875988	0	-	0.40404	(0.39,0.42]	chr2	257485	58	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.81106	3.79106	4.77106	6.4431e-4	3.03764e-4	0.00799617	0.00472028
chr1	171824696	171824784	1368954	0	-	0.647727	(0.59,1]	chr1	139502	2	EXON_PSEUDO	EXON_PSEUDO	RP4-612B18.1	ENSG00000224600.5	ENST00000498507.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	48	2	2.24397	3.790985	5.338	0.0206682	3.196e-4	0.0997234	0.00457916
chr22	31957242	31957332	18351659	0	+	0.4	(0.39,0.42]	chr22	1560136	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	3.32811	3.7909300000000004	4.25375	0.00182819	1.03195e-5	0.0183913	2.84226e-4
chrX	120605406	120605482	18844390	0	+	0.302632	(0.29,0.33]	chrX	1605833	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCTS1	ENSG00000232119.8	ENST00000493879.5:ENST00000493274.5:ENST00000371317.10:ENST00000371315.3:ENST00000487133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.45373	3.7907800000000003	5.12783	0.0156405	5.31593e-5	0.084273700000000007	0.00108035
chr5	69234884	69234975	6019733	0	+	0.56044	(0.53,0.59]	chr5	471336	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000626796.2:ENST00000506563.5:ENST00000512687.5:ENST00000515391.5:ENST00000512985.1:ENST00000256443.8:ENST00000515180.5:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.71318	3.790705	4.86823	0.00340745	4.35895e-4	0.0283456	0.00623608
chr8	47888517	47888583	9816681	0	-	0.469697	(0.455,0.49]	chr8	742751	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.69169	3.7904600000000004	4.88923	0.00126948	9.45747e-8	0.0139061	5.31584e-6
chr10	73759707	73759794	11115740	0	+	0.62069	(0.59,1]	chr10	845845	2	CDS	CDS:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.61074	3.790445	4.97015	0.025486	0.00140057	0.117089	0.0144327
chr16	74457873	74457933	16031049	0	-	0.65	(0.59,1]	chr16	1287265	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.61074	3.790445	4.97015	0.025486	0.00140057	0.117089	0.0144327
chr4	2928620	2928717	4687490	0	+	0.701031	(0.59,1]	chr4	388871	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.61074	3.790445	4.97015	0.025486	0.00140057	0.117089	0.0144327
chr19	11102724	11102786	17229990	0	+	0.596774	(0.59,1]	chr19	1419550	2	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.92097	3.790325	4.65968	0.0102634	0.00413632	0.0628742	0.0324998
chr1	155725435	155725490	484448	0	+	0.381818	(0.36,0.39]	chr1	50960	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	2.37674	3.790025	5.20331	0.00529284	2.53222e-5	0.0390084	6.51851e-4
chrX	107647605	107647646	18813921	0	+	0.512195	(0.49,0.53]	chrX	1603291	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PRPS1	ENSG00000147224.13	ENST00000643795.2:ENST00000372418.4:ENST00000372435.10:ENST00000644642.1:ENST00000674826.1:ENST00000676092.1:ENST00000675046.1:ENST00000675630.1:ENST00000675124.1:ENST00000675082.1:ENST00000675875.1:ENST00000675353.1:ENST00000676365.1:ENST00000372428.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.15207	3.789985	4.4279	0.00347189	0.00196987	0.0286293	0.0193972
chr1	42758917	42758983	966562	0	-	0.5	(0.49,0.53]	chr1	101769	2	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.38097	3.7899000000000003	5.19883	0.0425419	6.30063e-5	0.167547	0.00124286
chr11	44244187	44244287	11927589	0	+	0.51	(0.49,0.53]	chr11	911623	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000528159.1:ENST00000684437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.38097	3.7899000000000003	5.19883	0.0425419	6.30063e-5	0.167547	0.00124286
chr15	64162851	64162886	15339346	0	-	0.514286	(0.49,0.53]	chr15	1210888	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2:ENST00000558492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.38097	3.7899000000000003	5.19883	0.0425419	6.30063e-5	0.167547	0.00124286
chr14	20801504	20801597	14518857	0	-	0.548387	(0.53,0.59]	chr14	1136979	4	UTR3	UTR3:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	3.30943	3.789795	4.27016	0.0018255	2.78714e-7	0.0183913	1.34066e-5
chr1	108639123	108639222	394975	0	+	0.30303	(0.29,0.33]	chr1	38052	41	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.33544	3.789655	4.24387	0.00263476	0.0016889	0.0239118	0.0165476
chr2	68179526	68179621	2716493	0	-	0.326316	(0.29,0.33]	chr2	241809	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-474G23.1:PPP3R1	ENSG00000273398.6:ENSG00000221823.11	ENST00000406334.3:ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.33544	3.789655	4.24387	0.00263476	0.0016889	0.0239118	0.0165476
chr7	12229678	12229748	8134811	0	+	0.314286	(0.29,0.33]	chr7	621586	1	CDS	CDS:UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000420833.5:ENST00000396668.8:ENST00000396667.7:ENST00000492762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.33544	3.789655	4.24387	0.00263476	0.0016889	0.0239118	0.0165476
chr22	39965989	39966073	18372726	0	+	0.452381	(0.42,0.455]	chr22	1563513	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000478445.1:ENST00000407075.3:ENST00000481263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.66697	3.78955	4.91213	0.0190326	1.75074e-4	0.0958835	0.00306313
chr19	46782522	46782549	17595536	0	-	0.777778	(0.59,1]	chr19	1481408	1	CDS	CDS:UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6:ENST00000593713.1:ENST00000598022.1	protein_coding	protein_coding	protein_coding	protein_coding	5	132	2	3.15313	3.78953	4.42593	5.35219e-5	1.38583e-5	0.0010874	3.94563e-4
chr6	28904273	28904371	7652696	0	-	0.571429	(0.53,0.59]	chr6	583186	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	93	2	2.71083	3.78953	4.86823	4.35895e-4	1.50265e-5	0.00623608	3.84261e-4
chr1	21838998	21839085	890791	0	-	0.678161	(0.59,1]	chr1	92294	3	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding	5	154	2	3.36737	3.7894300000000003	4.21149	4.62051e-5	2.03623e-6	9.60045e-4	8.03841e-5
chr15	74850511	74850592	15375941	0	-	0.506173	(0.49,0.53]	chr15	1215490	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5:ENST00000567638.1:ENST00000565345.5:ENST00000562363.5:ENST00000564529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.78794	3.7894	4.79086	0.00251838	4.20783e-4	0.0226599	0.00611538
chr1	155729286	155729366	484495	0	+	0.475	(0.455,0.49]	chr1	50983	2	CDS	CDS:EXON_MRNA	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5:ENST00000462978.1:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000497433.1:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	3.06914	3.788595	4.50805	0.00122223	6.6649e-4	0.0135383	0.00820018
chr2	197489212	197489247	3106789	0	-	0.457143	(0.455,0.49]	chr2	274638	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.06914	3.788595	4.50805	0.00122223	6.6649e-4	0.0135383	0.00820018
chr5	138183265	138183363	6243532	0	+	0.489796	(0.455,0.49]	chr5	486343	2	CDS	CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.06914	3.788595	4.50805	0.00122223	6.6649e-4	0.0135383	0.00820018
chr17	7580710	7580783	16105723	0	+	0.575342	(0.53,0.59]	chr17	1296992	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584180.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	66	2	2.72478	3.788545	4.85231	0.00324675	1.71119e-7	0.0282494	8.87341e-6
chr6	160102558	160102658	7528943	0	+	0.66	(0.59,1]	chr6	574961	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	3.53648	3.7884700000000002	4.04046	0.00107706	9.42839e-5	0.0124943	0.0017195000000000001
chr17	4945899	4945997	16419496	0	-	0.510204	(0.49,0.53]	chr17	1337726	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000574872.1	protein_coding	protein_coding	protein_coding	protein_coding	13	164	2	3.14706	3.788405	4.42975	3.5478e-7	4.05335e-9	1.85538e-5	3.5451e-7
chr12	68659283	68659382	12939562	0	+	0.434343	(0.42,0.455]	chr12	1008340	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000543393.5:ENST00000540209.5:ENST00000542145.5:ENST00000539091.5:ENST00000543697.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.17397	3.7883649999999998	4.40276	0.0031821	0.0017618	0.0267094	0.0180053
chr15	44715422	44715433	14899954	0	+	0.454545	(0.42,0.455]	chr15	1171701	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000560681.1:ENST00000559220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.17397	3.7883649999999998	4.40276	0.0031821	0.0017618	0.0267094	0.0180053
chr2	8785836	8785933	2505135	0	-	0.43299	(0.42,0.455]	chr2	225968	2	CDS	CDS:UTR3:EXON_MRNA	KIDINS220	ENSG00000134313.16	ENST00000569008.2:ENST00000496383.5:ENST00000256707.8:ENST00000473731.5:ENST00000488729.5:ENST00000489024.5:ENST00000319688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.17397	3.7883649999999998	4.40276	0.0031821	0.0017618	0.0267094	0.0180053
chr7	73179086	73179178	8331289	0	+	0.445652	(0.42,0.455]	chr7	634244	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	22	2	3.17397	3.7883649999999998	4.40276	0.0031821	0.0017618	0.0267094	0.0180053
chrX	1386421	1386511	18925566	0	-	0.544444	(0.53,0.59]	chrX	1612947	4	UTR3	UTR3:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	19	339	2	3.28102	3.7882	4.29538	2.33839e-7	7.76224e-12	1.30421e-5	1.38806e-9
chr17	82935696	82935794	16387272	0	+	0.346939	(0.33,0.36]	chr17	1333167	25	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000683839.1:ENST00000682315.1:ENST00000576677.6:ENST00000574886.2:ENST00000577051.1:ENST00000575132.5:ENST00000576603.5:ENST00000573364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	3.60198	3.78789	3.9738	6.01238e-4	5.94302e-5	0.00811676	0.00119141
chr3	100732523	100732597	3637628	0	+	0.418919	(0.39,0.42]	chr3	311851	1	CDS	CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.49701	3.7877650000000003	5.07852	0.0339607	1.02164e-4	0.141431	0.00183311
chr9	130887376	130887475	10494305	0	+	0.525253	(0.49,0.53]	chr9	792936	18	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.01617	3.78773	4.55929	0.00116196	8.62231e-4	0.0130851	0.0100487
chr12	103937694	103937708	13056809	0	+	0.357143	(0.33,0.36]	chr12	1017317	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	140	2	3.03552	3.78756	4.5396	0.0012034	4.589e-12	0.0134762	8.73918e-10
chrX	74409711	74409808	18741846	0	+	0.402062	(0.39,0.42]	chrX	1599392	3	EXON_PSEUDO	EXON_PSEUDO	RPS7P14	ENSG00000213695.3	ENST00000426405.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.4261	3.78748	4.14886	0.00415881	0.00107164	0.0325842	0.0118238
chr3	139375467	139375540	4479658	0	-	0.452055	(0.42,0.455]	chr3	372266	1	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.51538	3.7874600000000003	4.05954	0.00617886	5.28826e-5	0.0439741	0.00107799
chr15	94870847	94870946	15124879	0	+	0.484848	(0.455,0.49]	chr15	1190050	136	INTRON	INTRON	RP11-255M2.3	ENSG00000277654.6	ENST00000618611.4:ENST00000648065.1:ENST00000618377.1:ENST00000621842.4:ENST00000615751.4:ENST00000614581.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	30	2	2.12994	3.7873799999999997	5.44482	0.0304832	1.36044e-5	0.130204	3.54469e-4
chr19	38852295	38852347	17561245	0	-	0.673077	(0.59,1]	chr19	1475130	1	UTR5	UTR5:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000388749.7:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.1277	3.787205	4.44671	0.00931497	0.00490589	0.0586162	0.0366648
chr4	56448417	56448507	4848606	0	+	0.444444	(0.42,0.455]	chr4	399442	1	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	3.51107	3.7871550000000003	4.06324	1.14038e-6	5.42418e-7	4.91686e-5	2.37553e-5
chr3	121494308	121494408	3699684	0	+	0.57	(0.53,0.59]	chr3	316099	3	EXON_PSEUDO	EXON_PSEUDO	RPL7AP11	ENSG00000242445.1	ENST00000486538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	3.02054	3.7866400000000002	4.55274	0.00577011	0.00167999	0.0426551	0.0164993
chr1	167411958	167412044	522885	0	+	0.581395	(0.53,0.59]	chr1	56141	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.90978	3.7866299999999997	4.66348	0.00857883	0.00107799	0.0552386	0.0118238
chr16	30724565	30724663	15631071	0	+	0.540816	(0.53,0.59]	chr16	1240525	11	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.90978	3.7866299999999997	4.66348	0.00857883	0.00107799	0.0552386	0.0118238
chr17	38735125	38735222	16531379	0	-	0.556701	(0.53,0.59]	chr17	1353283	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000610747.1:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.90978	3.7866299999999997	4.66348	0.00857883	0.00107799	0.0552386	0.0118238
chr11	73981475	73981553	12458863	0	-	0.525641	(0.49,0.53]	chr11	968531	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000542615.5:ENST00000541027.5:ENST00000539330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	3.19125	3.786585	4.38192	0.00259709	6.98376e-5	0.0229695	0.00147703
chr8	124488538	124488593	10062266	0	-	0.290909	(0.29,0.33]	chr8	757034	2	UTR3	UTR3:EXON_MRNA	TATDN1	ENSG00000147687.19	ENST00000522927.5:ENST00000276692.11:ENST00000630259.1:ENST00000523214.5:ENST00000523631.5:ENST00000519548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	3.31653	3.786565	4.2566	0.00303129	0.00261621	0.0257942	0.0238929
chr10	33057614	33057713	11444980	0	-	0.535354	(0.53,0.59]	chr10	872770	1	EXON_PSEUDO	EXON_PSEUDO	RPL7AP53	ENSG00000235962.5	ENST00000468834.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	41	2	3.56863	3.7862800000000005	4.00393	0.0108084	3.93456e-5	0.064368	8.48445e-4
chr7	142958365	142958428	9114932	0	-	0.555556	(0.53,0.59]	chr7	696031	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KEL	ENSG00000197993.9	ENST00000355265.7:ENST00000479768.6:ENST00000494148.1:ENST00000476829.5:ENST00000467543.6:ENST00000460479.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	3.56863	3.7862800000000005	4.00393	0.0108084	3.93456e-5	0.064368	8.48445e-4
chr18	9399427	9399527	16753326	0	+	0.38	(0.36,0.39]	chr18	1381534	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.84089	3.786175	4.73146	0.0128123	3.06966e-7	0.0719798	1.45846e-5
chr1	182883138	182883214	595143	0	+	0.381579	(0.36,0.39]	chr1	61663	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000485081.5:ENST00000473076.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	3.10506	3.7861	4.46714	0.00155822	7.38785e-4	0.0156889	0.00924579
chr1	155966415	155966479	1312629	0	-	0.515625	(0.49,0.53]	chr1	132991	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGEF2	ENSG00000116584.20	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000470874.5:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000609707.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr1	222632245	222632326	723988	0	+	0.506173	(0.49,0.53]	chr1	72968	2	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr11	65998108	65998206	12423535	0	-	0.510204	(0.49,0.53]	chr11	964316	17	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr12	45860800	45860874	12851786	0	+	0.527027	(0.49,0.53]	chr12	998026	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr15	28652483	28652582	14839109	0	+	0.515152	(0.49,0.53]	chr15	1164551	5	INTRON	INTRON	HERC2P9	ENSG00000206149.10	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr15	72775030	72775097	15371117	0	-	0.522388	(0.49,0.53]	chr15	1214600	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1:ENST00000569058.1:ENST00000566509.5:ENST00000562286.1:ENST00000562823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr17	7175840	7175937	16428456	0	-	0.494845	(0.49,0.53]	chr17	1339087	10	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr17	41912480	41912542	16544227	0	-	0.5	(0.49,0.53]	chr17	1356591	2	CDS	CDS:EXON_MRNA:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000590770.5:ENST00000590735.1:ENST00000592970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr22	24686922	24687019	18315079	0	+	0.494845	(0.49,0.53]	chr22	1556418	1	EXON_PSEUDO	EXON_PSEUDO	AP000357.4	ENSG00000224334.1	ENST00000409926.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr22	49527894	49527994	18543143	0	-	0.53	(0.49,0.53]	chr22	1583944	863	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr4	81504116	81504216	5488013	0	-	0.51	(0.49,0.53]	chr4	439895	323	INTRON	INTRON	RASGEF1B	ENSG00000138670.18	ENST00000638048.1:ENST00000512716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr6	13978058	13978156	7063052	0	+	0.510204	(0.49,0.53]	chr6	540626	3	UTR3	UTR3:EXON_MRNA	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000544682.5:ENST00000488300.6:ENST00000537388.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr6	41931778	41931830	7150472	0	+	0.519231	(0.49,0.53]	chr6	551696	2	CDS	CDS:UTR3:EXON_MRNA	BYSL	ENSG00000112578.10	ENST00000230340.9:ENST00000489290.1:ENST00000372996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr7	156633613	156633700	8634690	0	+	0.494253	(0.49,0.53]	chr7	659473	4	EXON_PSEUDO	EXON_PSEUDO	AC005534.6	ENSG00000234450.1	ENST00000431047.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr9	35090065	35090136	10638369	0	-	0.521127	(0.49,0.53]	chr9	804655	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PIGO	ENSG00000165282.14	ENST00000378617.4:ENST00000298004.9:ENST00000361778.6:ENST00000474436.1:ENST00000465745.6:ENST00000491687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chrX	40055440	40055513	19044936	0	-	0.506849	(0.49,0.53]	chrX	1618712	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.44951	3.78607	4.12263	0.0405223	0.00591451	0.153343	0.0427941
chr19	40371739	40371806	17328669	0	+	0.61194	(0.59,1]	chr19	1435567	2	CDS	CDS:UTR3:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000492243.1:ENST00000475983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	75	2	3.34171	3.78601	4.23031	0.00234977	3.46639e-5	0.0222173	7.61275e-4
chr17	36578050	36578118	16211512	0	+	0.485294	(0.455,0.49]	chr17	1309663	2	CDS	CDS:EXON_MRNA	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.50904	3.7859300000000005	5.06282	0.0310515	1.16789e-4	0.131262	0.0020505
chr8	123333877	123333949	10057004	0	-	0.472222	(0.455,0.49]	chr8	756605	1	CDS	CDS:UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.50904	3.7859300000000005	5.06282	0.0310515	1.16789e-4	0.131262	0.0020505
chr6	26285343	26285399	7647378	0	-	0.571429	(0.53,0.59]	chr6	582596	2	CDS	CDS:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1:ENST00000377727.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.56665	3.785615	5.00458	0.00209536	5.00256e-8	0.0196588	3.40358e-6
chr1	151400514	151400588	471578	0	+	0.540541	(0.53,0.59]	chr1	48190	2	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	3.69224	3.78554	3.87884	1.11478e-4	1.78865e-5	0.00213212	4.45448e-4
chr11	9414332	9414411	11792554	0	+	0.43038	(0.42,0.455]	chr11	902832	2	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000527431.1:ENST00000528833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	96	2	2.89978	3.78549	4.6712	5.81698e-5	7.36673e-9	0.00128763	5.97256e-7
chr10	12215739	12215835	10926841	0	+	0.5	(0.49,0.53]	chr10	831971	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CDC123	ENSG00000151465.14	ENST00000429258.6:ENST00000455773.7:ENST00000281141.9:ENST00000378900.6:ENST00000442050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.33324	3.785415	4.23759	0.00436474	0.00162947	0.0335517	0.0169972
chr16	69695203	69695271	15725308	0	+	0.514706	(0.49,0.53]	chr16	1252133	2	CDS	CDS:UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.33324	3.785415	4.23759	0.00436474	0.00162947	0.0335517	0.0169972
chr9	128970757	128970824	10482453	0	+	0.492537	(0.49,0.53]	chr9	791034	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.33324	3.785415	4.23759	0.00436474	0.00162947	0.0335517	0.0169972
chr1	160997682	160997781	1331415	0	-	0.383838	(0.36,0.39]	chr1	136426	26	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	2.76213	3.785305	4.80848	1.84142e-4	1.65455e-7	0.00320813	8.63103e-6
chr15	88907285	88907376	15434370	0	-	0.56044	(0.53,0.59]	chr15	1220415	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000542878.5:ENST00000558029.5:ENST00000559997.5:ENST00000558352.5:ENST00000559770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	91	2	3.58086	3.78524	3.98962	5.24546e-6	2.29235e-6	1.60997e-4	8.86852e-5
chr11	60067068	60067112	11961678	0	+	0.454545	(0.42,0.455]	chr11	915682	1	CDS	CDS:UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.4231	3.785075	4.14705	0.00112541	2.1071e-5	0.0128481	5.06044e-4
chr1	156138585	156138683	486167	0	+	0.673469	(0.59,1]	chr1	51299	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000368299.7:ENST00000448611.6:ENST00000473598.6:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.17889	3.785005	5.39112	0.025085	2.53595e-4	0.116848	0.00381472
chr17	20788732	20788827	16163505	0	+	0.505263	(0.49,0.53]	chr17	1303909	8	EXON_LNCRNA	EXON_LNCRNA	RP11-283C24.1	ENSG00000264215.1	ENST00000578585.1	lncRNA	lncRNA	lncRNA	lncRNA	1	23	2	2.72252	3.78498	4.84744	0.0161474	3.70203e-4	0.0860154	0.00515475
chr18	35142307	35142404	16822737	0	+	0.494845	(0.49,0.53]	chr18	1387343	21	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.72252	3.78498	4.84744	0.0161474	3.70203e-4	0.0860154	0.00515475
chr3	98517051	98517120	4318888	0	-	0.507246	(0.49,0.53]	chr3	360208	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000513873.1:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000506927.1:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5:ENST00000507411.5:ENST00000515620.5:ENST00000507944.5:ENST00000508659.5:ENST00000503621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.72252	3.78498	4.84744	0.0161474	3.70203e-4	0.0860154	0.00515475
chr9	121341301	121341354	10836422	0	-	0.528302	(0.49,0.53]	chr9	820986	1	CDS	CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.72252	3.78498	4.84744	0.0161474	3.70203e-4	0.0860154	0.00515475
chr3	196067657	196067757	4663336	0	-	0.4	(0.39,0.42]	chr3	385610	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.03239	3.7847600000000003	5.53713	0.00663814	3.48373e-6	0.046176300000000003	1.26023e-4
chr10	99403468	99403551	11657486	0	-	0.578313	(0.53,0.59]	chr10	888029	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000489349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	3.74542	3.784745	3.82407	0.0179666	2.30148e-4	0.0918323	0.00352524
chr16	81710584	81710682	15772095	0	+	0.510204	(0.49,0.53]	chr16	1255597	9	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	12	162	2	3.43814	3.784655	4.13117	5.53313e-8	4.61909e-8	3.70319e-6	2.87475e-6
chr11	74745914	74746014	12462688	0	-	0.5	(0.49,0.53]	chr11	969147	3	EXON_PSEUDO	EXON_PSEUDO	RP11-864N7.2	ENSG00000227615.1	ENST00000428553.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	90	2	3.31729	3.7845649999999997	4.25184	7.87963e-6	2.59344e-7	2.25573e-4	1.42291e-5
chr9	131258369	131258467	10870340	0	-	0.642857	(0.59,1]	chr9	824566	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	3.70806	3.7843299999999997	3.8606	5.14321e-4	2.2997e-4	0.00719062	0.00352524
chr20	36045617	36045715	17955997	0	-	0.244898	[0,0.29]	chr20	1521358	1	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	2.40395	3.784265	5.16458	0.0210081	3.97867e-5	0.101116	8.56316e-4
chr19	2243381	2243418	17195869	0	+	0.567568	(0.53,0.59]	chr19	1412788	1	UTR5	UTR5:EXON_MRNA	SF3A2	ENSG00000104897.10	ENST00000221494.10:ENST00000589118.5:ENST00000592839.6:ENST00000592314.5:ENST00000586396.2:ENST00000590034.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.89916	3.78426	4.66936	0.00890406	0.00103174	0.0565003	0.0121443
chr3	17159012	17159110	4059110	0	-	0.55102	(0.53,0.59]	chr3	341127	20	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.89916	3.78426	4.66936	0.00890406	0.00103174	0.0565003	0.0121443
chr8	43126336	43126435	9308537	0	+	0.585859	(0.53,0.59]	chr8	712880	36	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.89916	3.78426	4.66936	0.00890406	0.00103174	0.0565003	0.0121443
chr3	141915969	141916020	3790085	0	+	0.372549	(0.36,0.39]	chr3	323481	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000482635.1:ENST00000487199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	142	2	2.9102	3.7839799999999997	4.65776	5.15161e-4	6.13709e-12	0.00719513	1.12572e-9
chr1	156311113	156311195	1314044	0	-	0.597561	(0.59,1]	chr1	133411	3	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	152	2	3.46705	3.783975	4.1009	3.00886e-5	3.31352e-6	7.44367e-4	1.09618e-4
chr11	63976224	63976320	11977989	0	+	0.604167	(0.59,1]	chr11	918583	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	8	237	2	3.67496	3.783845	3.89273	2.62792e-6	4.83304e-7	9.92231e-5	2.14743e-5
chr12	120440537	120440633	13116073	0	+	0.520833	(0.49,0.53]	chr12	1023754	1	UTR3	UTR3:EXON_MRNA:INTRON	COX6A1:AL021546.6	ENSG00000111775.3:ENSG00000111780.8	ENST00000229379.3:ENST00000551806.1:ENST00000549525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	3.08904	3.78383	4.47862	3.90616e-5	4.15989e-8	9.35119e-4	2.62586e-6
chr6	30069306	30069399	7110073	0	+	0.548387	(0.53,0.59]	chr6	544501	1	UTR3	UTR3:EXON_MRNA	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6:ENST00000376765.6:ENST00000376763.5:ENST00000376758.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.23406	3.783785	5.33351	0.00870728	4.35359e-5	0.0558165	0.00091744700000000005
chr19	38845977	38846077	17561175	0	-	0.48	(0.455,0.49]	chr19	1475104	1	CDS_START	CDS_START:CDS:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1:ENST00000600741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	65	2	2.93103	3.78355	4.63607	1.15066e-4	6.94376e-7	0.00219531	2.92826e-5
chr3	9986561	9986661	4031415	0	-	0.55	(0.53,0.59]	chr3	338427	1	CDS_START	CDS_START:CDS:EXON_MRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000429759.5:ENST00000470827.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.8006	3.783465	4.76633	0.00233666	6.98999e-4	0.0221314	0.00846751
chr4	169703997	169704090	5218027	0	+	0.55914	(0.53,0.59]	chr4	420917	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.37399	3.783435	5.19288	0.0126178	9.22873e-5	0.0717599	0.0016906
chr1	155969182	155969282	1312660	0	-	0.49	(0.455,0.49]	chr1	133001	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGEF2	ENSG00000116584.20	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000609707.1:ENST00000487755.1:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.69053	3.78343	4.87633	0.0182983	2.95855e-4	0.0925808	0.00432147
chr10	68740628	68740661	11091373	0	+	0.484848	(0.455,0.49]	chr10	842964	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	CCAR1	ENSG00000060339.14	ENST00000536391.5:ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.69053	3.78343	4.87633	0.0182983	2.95855e-4	0.0925808	0.00432147
chr5	76733303	76733403	6044923	0	+	0.47	(0.455,0.49]	chr5	474229	11	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.69053	3.78343	4.87633	0.0182983	2.95855e-4	0.0925808	0.00432147
chr20	45896964	45897040	17803061	0	+	0.486842	(0.455,0.49]	chr20	1505451	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTSA	ENSG00000064601.21	ENST00000606788.5:ENST00000372484.8:ENST00000677394.1:ENST00000678988.2:ENST00000678078.1:ENST00000679053.2:ENST00000679343.2:ENST00000606066.3:ENST00000480961.3:ENST00000678622.2:ENST00000607187.3:ENST00000678691.2:ENST00000684198.1:ENST00000607212.3:ENST00000354880.9:ENST00000646241.3:ENST00000191018.9:ENST00000677525.1:ENST00000678939.1:ENST00000678512.1:ENST00000678025.1:ENST00000607814.7:ENST00000678331.1:ENST00000484855.4:ENST00000607482.6:ENST00000372459.7:ENST00000493522.8:ENST00000676967.1:ENST00000678443.1:ENST00000678217.1:ENST00000676597.1:ENST00000677755.2:ENST00000606782.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	3.20348	3.7832749999999997	4.36307	0.00218641	3.27782e-4	0.0208941	0.0046686
chr1	11091096	11091179	859407	0	-	0.409639	(0.39,0.42]	chr1	86884	2	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.88836	3.783005	4.67765	0.0102432	7.04737e-4	0.062872	0.00848325
chr12	110373760	110373855	13536801	0	-	0.4	(0.39,0.42]	chr12	1064793	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000481473.5:ENST00000552087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.88836	3.783005	4.67765	0.0102432	7.04737e-4	0.062872	0.00848325
chr4	5143105	5143205	4698036	0	+	0.42	(0.39,0.42]	chr4	390044	24	INTRON	INTRON	STK32B	ENSG00000152953.13	ENST00000282908.10:ENST00000512018.5:ENST00000512636.5:ENST00000510398.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.88836	3.783005	4.67765	0.0102432	7.04737e-4	0.062872	0.00848325
chr2	182924901	182925001	3059896	0	-	0.25	[0,0.29]	chr2	271262	159	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.99144	3.7828	4.57416	0.00112713	6.75561e-4	0.0122637	0.00873562
chr1	225921857	225921931	1531301	0	-	0.635135	(0.59,1]	chr1	153181	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RP4-559A3.7:PYCR2:MIR6741	ENSG00000255835.1:ENSG00000143811.19:ENSG00000284519.1	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000466127.1:ENST00000446534.1:ENST00000618782.1:ENST00000489681.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	2	72	2	3.66704	3.782725	3.89841	6.16458e-4	1.91539e-4	0.00822794	0.00304814
chr14	73716981	73717079	14702335	0	-	0.489796	(0.455,0.49]	chr14	1151256	20	UTR3	UTR3:EXON_MRNA	MIDEAS	ENSG00000156030.13	ENST00000394071.6:ENST00000476562.5:ENST00000286523.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.69344	3.78265	4.87186	0.0176068	2.33781e-4	0.0925619	0.00385436
chr16	16016495	16016558	15567472	0	+	0.460317	(0.455,0.49]	chr16	1232689	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.69344	3.78265	4.87186	0.0176068	2.33781e-4	0.0925619	0.00385436
chr16	68742379	68742479	15717932	0	+	0.49	(0.455,0.49]	chr16	1251497	36	INTRON	INTRON	CDH1	ENSG00000039068.20	ENST00000261769.10:ENST00000566612.5:ENST00000422392.6:ENST00000566510.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.69344	3.78265	4.87186	0.0176068	2.33781e-4	0.0925619	0.00385436
chr12	115991581	115991675	13555278	0	-	0.510638	(0.49,0.53]	chr12	1067064	7	CDS	CDS:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000648825.1:ENST00000648916.1:ENST00000549786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.9035	3.78261	5.66172	0.0295204	3.99372e-6	0.129773	1.28691e-4
chr2	135846236	135846314	2897965	0	-	0.487179	(0.455,0.49]	chr2	258494	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	3.54461	3.7825050000000005	4.0204	0.00736097	4.40117e-5	0.0490627	9.24938e-4
chr1	211941923	211942017	1479856	0	-	0.382979	(0.36,0.39]	chr1	149325	1	CDS	CDS:UTR3:EXON_MRNA	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.63115	3.78248	4.93381	0.0245975	1.90009e-4	0.114841	0.00302753
chr1	225784067	225784167	737867	0	+	0.37	(0.36,0.39]	chr1	74373	3	INTRON	INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.63115	3.78248	4.93381	0.0245975	1.90009e-4	0.114841	0.00302753
chr16	2765698	2765797	15494932	0	+	0.585859	(0.53,0.59]	chr16	1227802	43	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	8	125	2	2.94394	3.78233	4.62072	1.95922e-5	1.55043e-8	5.27015e-4	1.13092e-6
chr1	32672790	32672845	130337	0	+	0.4	(0.39,0.42]	chr1	16106	1	CDS	CDS:UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	84	2	3.23057	3.7821700000000003	4.33377	3.34829e-4	8.89243e-9	0.00509483	7.01268e-7
chr10	123154917	123155017	11298963	0	+	0.56	(0.53,0.59]	chr10	861555	1	CDS_START	CDS_START:CDS:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.74542	3.7821100000000003	3.8188	2.30148e-4	1.54941e-4	0.00352524	0.0028049
chr2	106697906	106698003	2825359	0	-	0.515464	(0.49,0.53]	chr2	252231	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	3.4415	3.7820650000000002	4.12263	0.00591451	9.98297e-4	0.0427941	0.0111246
chr5	150710954	150711051	6914735	0	-	0.505155	(0.49,0.53]	chr5	529276	27	UTR3	UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.4415	3.7820650000000002	4.12263	0.00591451	9.98297e-4	0.0427941	0.0111246
chr12	129113064	129113140	13153767	0	+	0.434211	(0.42,0.455]	chr12	1027745	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5:ENST00000508925.6:ENST00000540739.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	6	88	2	3.68484	3.78203	3.87922	1.04705e-4	1.23111e-7	0.0020295	6.69645e-6
chr14	20456667	20456763	14171276	0	+	0.479167	(0.455,0.49]	chr14	1109110	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555306.5:ENST00000557344.5:ENST00000557181.5:ENST00000554325.1:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1:ENST00000556054.5:ENST00000557592.5:ENST00000557365.1:ENST00000557150.5:ENST00000438886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.20069	3.7818799999999997	4.36307	0.00285821	0.00218641	0.0245841	0.0208941
chr14	67376514	67376590	14360486	0	+	0.473684	(0.455,0.49]	chr14	1122444	2	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.20069	3.7818799999999997	4.36307	0.00285821	0.00218641	0.0245841	0.0208941
chr5	62512245	62512324	6611805	0	-	0.468354	(0.455,0.49]	chr5	511098	1	EXON_PSEUDO	EXON_PSEUDO	CKS1BP3	ENSG00000268942.2	ENST00000600888.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.20069	3.7818799999999997	4.36307	0.00285821	0.00218641	0.0245841	0.0208941
chr5	139681355	139681447	6250936	0	+	0.456522	(0.455,0.49]	chr5	487150	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1:ENST00000515038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.20069	3.7818799999999997	4.36307	0.00285821	0.00218641	0.0245841	0.0208941
chr3	184173121	184173219	3948135	0	+	0.44898	(0.42,0.455]	chr3	331990	25	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	8	101	2	3.19913	3.7818249999999995	4.36452	2.67879e-6	9.38109e-8	9.19863e-5	5.9091e-6
chr1	111118059	111118159	1223941	0	-	0.32	(0.29,0.33]	chr1	119634	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.80161	3.7817600000000002	4.76191	0.00415667	2.22391e-7	0.0325842	1.10935e-5
chr10	32900474	32900574	11443878	0	-	0.38	(0.36,0.39]	chr10	872611	3	UTR3	UTR3:EXON_MRNA:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	3.69711	3.781685	3.86626	1.63058e-5	6.18583e-6	4.12921e-4	2.02643e-4
chr22	20587539	20587632	18299210	0	+	0.397849	(0.39,0.42]	chr22	1553516	10	UTR3	UTR3:EXON_MRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.66467	3.781575	3.89848	3.60066e-4	9.30194e-5	0.00544157	0.00169783
chr1	58539194	58539294	1054905	0	-	0.39	(0.36,0.39]	chr1	108106	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	DAB1:OMA1	ENSG00000173406.16:ENSG00000162600.12	ENST00000485760.5:ENST00000371226.8:ENST00000456980.5:ENST00000467063.1:ENST00000419242.5:ENST00000426139.5:ENST00000453710.1:ENST00000482274.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr1	179351316	179351389	576494	0	+	0.383562	(0.36,0.39]	chr1	59851	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr10	67797025	67797115	11554758	0	-	0.377778	(0.36,0.39]	chr10	878785	5	UTR3	UTR3:EXON_MRNA	DNAJC12	ENSG00000108176.15	ENST00000225171.7:ENST00000483798.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr14	96853073	96853105	14477712	0	+	0.375	(0.36,0.39]	chr14	1131011	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr16	25239619	25239717	15898091	0	-	0.387755	(0.36,0.39]	chr16	1272711	38	UTR3	UTR3:EXON_MRNA	ZKSCAN2	ENSG00000155592.16	ENST00000328086.12:ENST00000569150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr19	57470980	57471080	17639043	0	-	0.38	(0.36,0.39]	chr19	1490419	15	UTR3	UTR3:EXON_MRNA:INTRON	AC004076.9:ZNF772	ENSG00000268163.1:ENSG00000197128.12	ENST00000596831.1:ENST00000415705.3:ENST00000600175.5:ENST00000601768.1:ENST00000343280.8:ENST00000427512.6:ENST00000356584.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr2	9406734	9406833	2507250	0	-	0.363636	(0.36,0.39]	chr2	226165	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ITGB1BP1	ENSG00000119185.13	ENST00000355346.9:ENST00000360635.7:ENST00000238091.8:ENST00000483795.5:ENST00000490426.5:ENST00000497031.5:ENST00000464228.5:ENST00000359712.7:ENST00000465527.5:ENST00000460720.5:ENST00000488451.5:ENST00000470507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr5	60754723	60754778	6607880	0	-	0.381818	(0.36,0.39]	chr5	510702	1	CDS	CDS:UTR3:EXON_MRNA	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000504455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr5	77463094	77463150	6648346	0	-	0.375	(0.36,0.39]	chr5	513772	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	WDR41	ENSG00000164253.14	ENST00000296679.9:ENST00000515253.5:ENST00000507029.5:ENST00000507654.5:ENST00000509701.5:ENST00000511791.1:ENST00000505129.5:ENST00000506307.5:ENST00000507452.5:ENST00000509892.5:ENST00000515321.5:ENST00000513417.5:ENST00000503035.5:ENST00000514559.5:ENST00000511036.5:ENST00000504895.5:ENST00000509971.5:ENST00000506474.5:ENST00000507239.5:ENST00000509858.5:ENST00000513917.5:ENST00000514451.5:ENST00000512168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr7	20002957	20003053	8166647	0	+	0.385417	(0.36,0.39]	chr7	622663	3	EXON_PSEUDO	EXON_PSEUDO	RPL21P75	ENSG00000213860.4	ENST00000396599.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.53094	3.78157	4.0322	0.0305588	0.00588589	0.130016	0.0427941
chr9	98086884	98086981	10759994	0	-	0.515464	(0.49,0.53]	chr9	814726	27	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1:ENST00000341469.7:ENST00000342043.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	3.33324	3.78155	4.22986	0.00162947	1.25249e-5	0.0169972	3.30689e-4
chr3	43719245	43719344	3441070	0	+	0.373737	(0.36,0.39]	chr3	299384	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000649763.1:ENST00000643140.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000454293.2:ENST00000642351.1:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	135	2	3.40941	3.78149	4.15357	5.03355e-6	3.63508e-10	1.70872e-4	4.27584e-8
chr21	29067630	29067705	18202060	0	-	0.426667	(0.42,0.455]	chr21	1544749	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5:ENST00000494296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	57	2	3.21958	3.7814550000000002	4.34333	5.79033e-5	5.37112e-6	0.00116556	1.79904e-4
chr19	14621981	14622068	17481473	0	-	0.413793	(0.39,0.42]	chr19	1464658	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRE3:ITGB1P1	ENSG00000131355.15:ENSG00000269378.1	ENST00000344373.8:ENST00000443157.6:ENST00000253673.6:ENST00000599900.5:ENST00000596032.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	4	60	2	2.5823	3.781365	4.98043	0.00246531	4.28317e-8	0.0230262	2.69344e-6
chr1	99717467	99717525	1197430	0	-	0.482759	(0.455,0.49]	chr1	116866	2	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.40009	3.781065	4.16204	0.00120619	1.83061e-5	0.0129255	4.99708e-4
chrX	68531899	68531999	18720678	0	+	0.44	(0.42,0.455]	chrX	1597226	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	YIPF6	ENSG00000181704.12	ENST00000451537.5:ENST00000374622.3:ENST00000374643.7:ENST00000462683.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.31161	3.780945	4.25028	0.00406761	0.00186138	0.032143	0.018635
chr3	23919501	23919600	3358562	0	+	0.292929	(0.29,0.33]	chr3	294139	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	139	2	3.75935	3.780865	3.80238	2.91511e-8	1.76089e-9	2.12972e-6	1.73201e-7
chr10	100526398	100526476	11663232	0	-	0.538462	(0.53,0.59]	chr10	888945	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-411B6.6:NDUFB8	ENSG00000255339.6:ENSG00000166136.16	ENST00000529568.5:ENST00000527595.5:ENST00000557395.5:ENST00000528174.5:ENST00000533549.1:ENST00000299166.9:ENST00000464651.1:ENST00000370322.5:ENST00000370320.4:ENST00000528425.5:ENST00000466088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.22207	3.780775	5.33948	0.00910511	4.08763e-5	0.0576716	9.64741e-4
chr9	131197315	131197415	10496360	0	+	0.56	(0.53,0.59]	chr9	793351	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000531929.5:ENST00000651334.1:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	179	2	3.33177	3.7807250000000003	4.22968	2.56398e-6	1.13196e-9	9.74608e-5	1.16703e-7
chr16	177081	177133	15480747	0	+	0.634615	(0.59,1]	chr16	1224206	2	CDS	CDS:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1:ENST00000487791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	924	2	3.58905	3.780715	3.97238	3.38627e-8	1.36599e-9	2.20412e-6	1.49931e-7
chr1	58782373	58782472	1055684	0	-	0.707071	(0.59,1]	chr1	108286	3	CDS	CDS:EXON_MRNA	JUN	ENSG00000177606.8	ENST00000678696.1:ENST00000371222.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr1	155247781	155247881	1307176	0	-	0.71	(0.59,1]	chr1	132042	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	FAM189B	ENSG00000160767.21	ENST00000361361.7:ENST00000350210.6:ENST00000368368.7:ENST00000368366.5:ENST00000621094.4:ENST00000487649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr10	79292157	79292256	11148350	0	+	0.707071	(0.59,1]	chr10	847332	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr12	57720783	57720809	12904348	0	+	0.653846	(0.59,1]	chr12	1005908	1	CDS	CDS:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr12	67269627	67269717	12933688	0	+	0.766667	(0.59,1]	chr12	1008038	4	UTR5	UTR5:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000541058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr14	102041573	102041609	14495808	0	+	0.666667	(0.59,1]	chr14	1133236	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1:ENST00000556499.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr17	76727093	76727181	16359244	0	+	0.75	(0.59,1]	chr17	1328586	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	METTL23	ENSG00000181038.14	ENST00000615984.4:ENST00000589977.5:ENST00000341249.11:ENST00000591571.5:ENST00000592849.5:ENST00000588783.5:ENST00000586738.5:ENST00000588563.5:ENST00000588302.5:ENST00000586752.5:ENST00000590964.5:ENST00000588822.1:ENST00000586200.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr17	78971490	78971575	16698067	0	-	0.670588	(0.59,1]	chr17	1376213	4	UTR3	UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr19	3464058	3464157	17202164	0	+	0.727273	(0.59,1]	chr19	1413755	14	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr19	6364451	6364545	17213136	0	+	0.648936	(0.59,1]	chr19	1415812	1	CDS	CDS:EXON_MRNA:INTRON	CLPP	ENSG00000125656.11	ENST00000245816.11:ENST00000596070.1:ENST00000594780.1:ENST00000597326.6:ENST00000596149.5:ENST00000596605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr19	10154385	10154479	17457973	0	-	0.638298	(0.59,1]	chr19	1460493	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr19	29213118	29213151	17528373	0	-	0.727273	(0.59,1]	chr19	1471078	1	UTR5	UTR5:EXON_MRNA	UQCRFS1	ENSG00000169021.6	ENST00000304863.6	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr22	23966887	23966914	18309892	0	+	0.62963	(0.59,1]	chr22	1555629	1	UTR5	UTR5:EXON_MRNA	DDTL	ENSG00000099974.8	ENST00000215770.6	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr3	52229033	52229133	4182402	0	-	0.67	(0.59,1]	chr3	352582	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-330H6.5:TWF2	ENSG00000173366.11:ENSG00000247596.10	ENST00000494383.1:ENST00000478201.1:ENST00000305533.10:ENST00000678838.1:ENST00000678352.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000679180.1:ENST00000678700.1:ENST00000676552.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr6	2971581	2971678	7571056	0	-	0.752577	(0.59,1]	chr6	577762	9	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000616722.4:ENST00000644388.1:ENST00000380520.6:ENST00000646775.1	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr6	32835642	32835707	7667209	0	-	0.6	(0.59,1]	chr6	586808	1	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr6	41600512	41600610	7149878	0	+	0.591837	(0.59,1]	chr6	551565	17	UTR3	UTR3:EXON_MRNA	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7	protein_coding	protein_coding	protein_coding	protein_coding	0	17	2	3.71566	3.780615	3.84557	0.0487443	0.0410704	0.175495	0.163285
chr3	121494208	121494308	3699683	0	+	0.54	(0.53,0.59]	chr3	316099	2	EXON_PSEUDO	EXON_PSEUDO	RPL7AP11	ENSG00000242445.1	ENST00000486538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	33	2	2.78899	3.780605	4.77222	0.00245784	6.67251e-4	0.0221765	0.00867533
chr7	107185800	107185871	8455414	0	+	0.464789	(0.455,0.49]	chr7	645889	1	CDS	CDS:EXON_MRNA	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	3.56037	3.7805299999999997	4.00069	5.72551e-4	5.13615e-5	0.0078026	0.00104999
chr1	167863561	167863661	1348559	0	-	0.54	(0.53,0.59]	chr1	138139	21	INTRON	INTRON	ADCY10	ENSG00000143199.18	ENST00000367851.9:ENST00000545172.5:ENST00000367848.1	protein_coding	protein_coding	protein_coding	protein_coding	7	146	2	2.72408	3.780515	4.83695	3.72688e-4	1.18398e-10	0.00559101	1.57661e-8
chr17	81510099	81510197	16707861	0	-	0.397959	(0.39,0.42]	chr17	1377329	8	UTR3	UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	360	2	3.64911	3.78037	3.91163	2.12377e-9	8.56692e-12	2.20257e-7	1.51564e-9
chr17	41867809	41867904	16543746	0	-	0.452632	(0.42,0.455]	chr17	1356444	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000588779.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	3.46385	3.78023	4.09661	7.26611e-5	2.79795e-5	0.00139386	7.07527e-4
chr7	5527847	5527891	8659476	0	-	0.590909	(0.59,1]	chr7	662111	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	610	2	3.46971	3.78011	4.09051	1.51761e-7	3.1323e-9	9.01817e-6	2.83919e-7
chr7	75537673	75537773	8859895	0	-	0.39	(0.36,0.39]	chr7	677095	45	UTR3	UTR3:EXON_MRNA	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.84089	3.780075	4.71926	0.0128123	5.29682e-4	0.0719798	0.006804
chr7	135635580	135635657	8553209	0	+	0.38961	(0.36,0.39]	chr7	652877	1	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.84089	3.780075	4.71926	0.0128123	5.29682e-4	0.0719798	0.006804
chr21	43982992	43983092	18137642	0	+	0.49	(0.455,0.49]	chr21	1538560	7	UTR3	UTR3:EXON_MRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.58479	3.78002	4.97525	0.00200187	1.38474e-4	0.0189555	0.00254294
chr5	37364264	37364364	6540710	0	-	0.49	(0.455,0.49]	chr5	506687	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1:ENST00000507675.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.58479	3.78002	4.97525	0.00200187	1.38474e-4	0.0189555	0.00254294
chr14	74735328	74735428	14401174	0	+	0.44	(0.42,0.455]	chr14	1125404	5	UTR3	UTR3:EXON_MRNA	FCF1	ENSG00000119616.11	ENST00000341162.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.91373	3.779985	4.64624	0.00892357	8.75333e-4	0.0567495	0.0101169
chr15	79236331	79236428	15042756	0	+	0.443299	(0.42,0.455]	chr15	1183487	1	EXON_PSEUDO	EXON_PSEUDO	HNRNPCP3	ENSG00000259419.2	ENST00000560385.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	2.91373	3.779985	4.64624	0.00892357	8.75333e-4	0.0567495	0.0101169
chr2	202896064	202896141	3128841	0	-	0.441558	(0.42,0.455]	chr2	276653	1	CDS	CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000478869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.91373	3.779985	4.64624	0.00892357	8.75333e-4	0.0567495	0.0101169
chr3	15059368	15059421	4050262	0	-	0.45283	(0.42,0.455]	chr3	340147	1	CDS	CDS:EXON_MRNA	MRPS25	ENSG00000131368.8	ENST00000253686.7:ENST00000449354.6:ENST00000420267.5:ENST00000444840.6:ENST00000447299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.91373	3.779985	4.64624	0.00892357	8.75333e-4	0.0567495	0.0101169
chr12	95865323	95865388	13026708	0	+	0.369231	(0.36,0.39]	chr12	1014080	1	CDS	CDS:EXON_MRNA:INTRON	SNRPF	ENSG00000139343.10	ENST00000266735.9:ENST00000553192.5:ENST00000552085.1:ENST00000549580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	2.71443	3.7799650000000002	4.8455	5.60322e-4	1.22274e-7	0.00771955	6.6551e-6
chr12	56601914	56602007	13351717	0	-	0.634409	(0.59,1]	chr12	1051625	5	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.5215	3.7799199999999997	5.03834	0.032241	0.00108238	0.135671	0.0118355
chr19	47741999	47742093	17363610	0	+	0.670213	(0.59,1]	chr19	1441384	7	UTR3	UTR3:EXON_MRNA	EHD2	ENSG00000024422.12	ENST00000263277.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.5215	3.7799199999999997	5.03834	0.032241	0.00108238	0.135671	0.0118355
chr22	41507876	41507962	18380852	0	+	0.686047	(0.59,1]	chr22	1564550	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000482208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.9891200000000002	3.779745	4.57037	0.00823979	0.0054994	0.0540283	0.0402071
chr22	16611657	16611735	18285823	0	+	0.512821	(0.49,0.53]	chr22	1551652	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	3	36	2	2.81492	3.7796499999999997	4.74438	6.31846e-4	5.91752e-4	0.00837621	0.00743488
chr1	161600939	161601039	501388	0	+	0.36	(0.33,0.36]	chr1	54336	3	SS3_PROX	SS3_PROX:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	lncRNA	lncRNA	lncRNA:polymorphic_pseudogene	lncRNA:processed_transcript	2	26	2	2.07736	3.77961	5.48186	0.0442037	7.22374e-6	0.172163	2.11873e-4
chr1	149842305	149842405	1286943	0	-	0.59	(0.53,0.59]	chr1	127833	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC18	ENSG00000203812.2	ENST00000369159.2	protein_coding	protein_coding	protein_coding	protein_coding	23	404	2	3.26866	3.77942	4.29018	1.06195e-7	2.96596e-12	6.62129e-6	5.95723e-10
chr1	159918502	159918601	1326672	0	-	0.555556	(0.53,0.59]	chr1	135579	5	UTR3	UTR3:EXON_MRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9	protein_coding	protein_coding	protein_coding	protein_coding	17	269	2	3.30112	3.77941	4.2577	8.1344e-8	2.54862e-10	4.6916e-6	3.4545e-8
chr1	77960183	77960263	1112788	0	-	0.6	(0.59,1]	chr1	111876	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000470287.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.11642	3.7793900000000002	5.44236	0.0144884	2.02004e-4	0.0790431	0.00317801
chr5	10288475	10288529	6446980	0	-	0.537037	(0.53,0.59]	chr5	502183	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	3.69065	3.77937	3.86809	3.04331e-4	1.18973e-4	0.00472028	0.00207755
chr1	225404625	225404706	1528085	0	-	0.407407	(0.39,0.42]	chr1	152786	1	CDS	CDS:UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	104	2	3.72074	3.779355	3.83797	3.2887e-7	1.17386e-7	1.73684e-5	6.41673e-6
chr7	97852258	97852358	8940606	0	-	0.56	(0.53,0.59]	chr7	682228	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	40	2	1.97928	3.7792950000000003	5.57931	0.0218546	1.05602e-5	0.104785	2.89015e-4
chr2	119993363	119993445	2858818	0	-	0.390244	(0.39,0.42]	chr2	255229	3	EXON_PSEUDO	EXON_PSEUDO	RPL27P7	ENSG00000233741.1	ENST00000441321.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	3.22662	3.7789599999999997	4.3313	0.00257296	0.00209984	0.0229363	0.0204266
chr9	91409194	91409269	10731265	0	-	0.413333	(0.39,0.42]	chr9	811931	3	UTR3	UTR3:EXON_MRNA	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.22662	3.7789599999999997	4.3313	0.00257296	0.00209984	0.0229363	0.0204266
chrX	149480958	149481057	19263818	0	-	0.393939	(0.39,0.42]	chrX	1636304	41	UTR3	UTR3:EXON_MRNA	IDS:AF011889.5	ENSG00000010404.18:ENSG00000241489.8	ENST00000340855.11:ENST00000651111.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.22662	3.7789599999999997	4.3313	0.00257296	0.00209984	0.0229363	0.0204266
chr1	235111187	235111285	1560084	0	-	0.408163	(0.39,0.42]	chr1	156012	20	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	14	191	2	3.56307	3.77882	3.99457	3.44147e-7	1.56067e-10	1.80203e-5	2.00697e-8
chr19	11436117	11436217	17231121	0	+	0.65	(0.59,1]	chr19	1419875	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000591946.5:ENST00000589126.5:ENST00000588269.1:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5:ENST00000589838.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	115	2	2.91668	3.77857	4.64046	5.47942e-4	3.26241e-6	0.00756447	1.08317e-4
chr16	88808278	88808376	15807319	0	+	0.561224	(0.53,0.59]	chr16	1258141	1	UTR3	UTR3:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	3.58031	3.778425	3.97654	3.64147e-5	2.59045e-7	8.79008e-4	1.26294e-5
chr1	53827998	53828085	1026183	0	-	0.528736	(0.49,0.53]	chr1	106431	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	3.58926	3.778415	3.96757	6.21316e-5	3.32125e-5	0.00134149	7.33555e-4
chr7	107916793	107916878	8457451	0	+	0.435294	(0.42,0.455]	chr7	646318	1	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	72	2	2.95467	3.7784050000000002	4.60214	3.71937e-5	7.96714e-7	8.07933e-4	3.65339e-5
chr6	108211962	108212055	7883755	0	-	0.322581	(0.29,0.33]	chr6	603535	9	UTR3	UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	99	2	3.75188	3.778365	3.80485	1.06483e-7	3.58695e-8	6.63725e-6	2.32046e-6
chr2	216206027	216206119	2380726	0	+	0.347826	(0.33,0.36]	chr2	213872	10	UTR3	UTR3:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.34893	3.778245	4.20756	0.00386591	2.22813e-4	0.0310764	0.00370775
chr1	6636181	6636246	845612	0	-	0.538462	(0.53,0.59]	chr1	85415	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DNAJC11	ENSG00000007923.16	ENST00000451196.5:ENST00000465508.5:ENST00000377577.10:ENST00000294401.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.1234	3.778095	4.43279	0.00390623	0.0026472	0.0322851	0.0231864
chr17	4798340	4798422	16093304	0	+	0.548781	(0.53,0.59]	chr17	1294596	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMB6	ENSG00000142507.10	ENST00000614486.4:ENST00000270586.8:ENST00000575643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.1234	3.778095	4.43279	0.00390623	0.0026472	0.0322851	0.0231864
chr7	42932158	42932214	8791734	0	-	0.571429	(0.53,0.59]	chr7	670238	1	UTR5	UTR5:EXON_MRNA	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.1234	3.778095	4.43279	0.00390623	0.0026472	0.0322851	0.0231864
chr1	27850261	27850346	114783	0	+	0.552941	(0.53,0.59]	chr1	13954	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000431586.1:ENST00000486634.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.7898	3.778065	4.76633	0.0128364	6.98999e-4	0.0719798	0.00846751
chr16	84662232	84662331	15790161	0	+	0.262626	[0,0.29]	chr16	1256621	2	UTR3	UTR3:EXON_MRNA	KLHL36	ENSG00000135686.13	ENST00000564996.6:ENST00000258157.9:ENST00000564159.1:ENST00000325279.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.82443	3.778055	4.73168	0.0180803	3.88478e-4	0.0920398	0.00534839
chr16	68191133	68191225	15714916	0	+	0.402174	(0.39,0.42]	chr16	1251034	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	3.6576	3.77804	3.89848	9.30194e-5	2.40332e-5	0.00169783	6.22273e-4
chr16	18538600	18538676	15876674	0	-	0.434211	(0.42,0.455]	chr16	1269189	2	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000564355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.70451	3.7780050000000003	3.8515	0.0119089	2.72131e-4	0.0686664	0.00404713
chr18	23533354	23533435	17037270	0	-	0.432099	(0.42,0.455]	chr18	1400529	1	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000591107.6:ENST00000590723.5:ENST00000593280.2:ENST00000586150.5:ENST00000269228.10:ENST00000588867.1:ENST00000591051.1:ENST00000587163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.70451	3.7780050000000003	3.8515	0.0119089	2.72131e-4	0.0686664	0.00404713
chrX	108084589	108084685	19163716	0	-	0.447917	(0.42,0.455]	chrX	1629964	5	UTR3	UTR3:EXON_MRNA	PSMD10	ENSG00000101843.19	ENST00000217958.8:ENST00000372296.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.70451	3.7780050000000003	3.8515	0.0119089	2.72131e-4	0.0686664	0.00404713
chr16	68121986	68122080	15714212	0	+	0.404255	(0.39,0.42]	chr16	1250981	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-67A1.2:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	12	150	2	3.69151	3.777775	3.86404	2.06776e-8	1.51882e-8	1.58157e-6	1.11227e-6
chr10	59792419	59792518	11517223	0	-	0.363636	(0.36,0.39]	chr10	877718	38	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.32678	3.77761	5.22844	0.0193538	4.38129e-9	0.0943643	3.79596e-7
chr15	43761477	43761531	14896441	0	+	0.333333	(0.33,0.36]	chr15	1171273	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	82	2	3.4399	3.7775499999999997	4.1152	1.29517e-4	8.39856e-9	0.00242147	6.66388e-7
chr1	207757013	207757107	689832	0	+	0.425532	(0.42,0.455]	chr1	70060	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	3.56851	3.7774	3.98629	3.9883e-5	2.11853e-6	9.51945e-4	7.50523e-5
chr8	93957425	93957514	9957761	0	-	0.426966	(0.42,0.455]	chr8	750951	2	EXON_PSEUDO	EXON_PSEUDO	RPL34P18	ENSG00000240509.1	ENST00000466433.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	63	2	3.56851	3.7774	3.98629	3.9883e-5	2.11853e-6	9.51945e-4	7.50523e-5
chrX	135964530	135964628	19248578	0	-	0.326531	(0.29,0.33]	chrX	1635139	41	UTR3	UTR3:EXON_MRNA	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000681201.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.48001	3.777355	4.0747	0.00577533	0.00126219	0.0417823	0.013837
chr12	69588205	69588262	12943426	0	+	0.54386	(0.53,0.59]	chr12	1008970	2	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	3.39416	3.77721	4.16026	0.00126006	6.52435e-7	0.013837	2.7837e-5
chr17	21259967	21260039	16478570	0	-	0.458333	(0.455,0.49]	chr17	1346822	1	EXON_PSEUDO	EXON_PSEUDO	EIF1P5	ENSG00000266563.1	ENST00000585002.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	28	2	2.40664	3.77719	5.14774	0.0123662	7.45457e-5	0.0705839	0.00142165
chr7	158641168	158641266	9158594	0	-	0.316327	(0.29,0.33]	chr7	699496	15	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	63	2	3.77175	3.7771299999999997	3.78251	1.95871e-6	1.12402e-6	7.75881e-5	4.41253e-5
chr1	25305512	25305609	103798	0	+	0.453608	(0.42,0.455]	chr1	12157	17	INTRON	INTRON	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr1	67105580	67105680	1077810	0	-	0.43	(0.42,0.455]	chr1	110088	18	INTRON	INTRON	C1orf141	ENSG00000203963.12	ENST00000371007.6:ENST00000684719.1:ENST00000371006.5:ENST00000475209.6:ENST00000371004.6:ENST00000621590.4:ENST00000544837.5:ENST00000448166.6:ENST00000603691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr1	173839366	173839456	550130	0	+	0.422222	(0.42,0.455]	chr1	58458	1	CDS	CDS:UTR3:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000648458.1:ENST00000649106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr10	102868420	102868519	11231563	0	+	0.434343	(0.42,0.455]	chr10	855679	1	EXON_SMALL	EXON_SMALL:INTRON	BORCS7-ASMT:U6	ENSG00000270316.1:ENSG00000283337.1	ENST00000299353.6:ENST00000636230.1	snRNA	snRNA	snRNA:protein_coding	snRNA:nonsense_mediated_decay	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr12	54520693	54520759	12893880	0	+	0.424242	(0.42,0.455]	chr12	1003162	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2:ENST00000549451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr14	76969052	76969145	14413241	0	+	0.44086	(0.42,0.455]	chr14	1126544	5	EXON_PSEUDO	EXON_PSEUDO	RP11-7F17.1	ENSG00000243225.2	ENST00000488511.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr2	46902767	46902867	2629810	0	-	0.45	(0.42,0.455]	chr2	236786	10	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr2	195706615	195706700	2290634	0	+	0.435294	(0.42,0.455]	chr2	207598	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr6	89712715	89712786	7838631	0	-	0.450704	(0.42,0.455]	chr6	600666	3	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr6	112616702	112616800	7901817	0	-	0.428571	(0.42,0.455]	chr6	605298	1	EXON_PSEUDO	EXON_PSEUDO	PA2G4P5	ENSG00000225580.2	ENST00000418595.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr6	161136240	161136339	8053532	0	-	0.424242	(0.42,0.455]	chr6	615791	64	UTR3	UTR3:EXON_MRNA	AGPAT4	ENSG00000026652.15	ENST00000320285.9:ENST00000366911.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr7	4766953	4767052	8109628	0	+	0.444444	(0.42,0.455]	chr7	619657	46	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr7	55954993	55955078	8289941	0	+	0.423529	(0.42,0.455]	chr7	631379	2	CDS	CDS:EXON_MRNA:INTRON	RP11-15K19.2:NIPSNAP2:MRPS17	ENSG00000249773.3:ENSG00000146729.10:ENSG00000239789.6	ENST00000426595.1:ENST00000446692.5:ENST00000285298.9:ENST00000443449.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr7	76021921	76021992	8862651	0	-	0.422535	(0.42,0.455]	chr7	677399	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STYXL1	ENSG00000127952.17	ENST00000360591.7:ENST00000248600.5:ENST00000359697.8:ENST00000340062.9:ENST00000430497.5:ENST00000438695.5:ENST00000431581.5:ENST00000454618.5:ENST00000451157.1:ENST00000474328.5:ENST00000460184.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr8	41653219	41653315	9806252	0	-	0.4375	(0.42,0.455]	chr8	741510	1	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.70273	3.7771150000000002	3.8515	0.0215502	0.0119089	0.102904	0.0686664
chr14	20457596	20457684	14171289	0	+	0.352273	(0.33,0.36]	chr14	1109118	2	UTR3	UTR3:EXON_MRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000557159.5:ENST00000557054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.3227	3.777075	4.23145	0.00222616	1.158e-5	0.0211992	3.09867e-4
chr22	36421272	36421365	18499123	0	-	0.451613	(0.42,0.455]	chr22	1578315	1	EXON_PSEUDO	EXON_PSEUDO	RPS15AP38	ENSG00000237668.1	ENST00000413110.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	52	2	2.90616	3.77706	4.64796	0.00162359	6.51077e-7	0.0169915	2.77961e-5
chr3	156542215	156542314	4538654	0	-	0.353535	(0.33,0.36]	chr3	376076	28	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	20	215	2	3.76522	3.776935	3.78865	5.70637e-9	1.571e-10	5.20029e-7	2.01477e-8
chr16	61055869	61055964	15969147	0	-	0.463158	(0.455,0.49]	chr16	1281543	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPS27AP16	ENSG00000224631.4	ENST00000591758.1:ENST00000492222.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	75	2	3.3605	3.776915	4.19333	0.00147278	3.27933e-8	0.0157578	2.15416e-6
chr1	51250698	51250795	1013594	0	-	0.556701	(0.53,0.59]	chr1	104822	2	EXON_PSEUDO	EXON_PSEUDO	RP11-296A18.5	ENSG00000233406.5	ENST00000480705.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	69	2	2.56002	3.7768949999999997	4.99377	0.00634904	5.58399e-8	0.0446708	3.38574e-6
chr12	53307844	53307929	13338787	0	-	0.588235	(0.53,0.59]	chr12	1049028	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000550033.5:ENST00000672900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	2.99511	3.7768550000000003	4.5586	0.00161229	9.46531e-4	0.0169168	0.010681
chr2	135715549	135715621	2082861	0	+	0.583333	(0.53,0.59]	chr2	195378	1	CDS	CDS:EXON_MRNA:INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000445855.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.99511	3.7768550000000003	4.5586	0.00161229	9.46531e-4	0.0169168	0.010681
chr3	96617561	96617658	4316743	0	-	0.360825	(0.36,0.39]	chr3	360010	4	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	87	990	2	3.31833	3.77674	4.23515	7.20319e-11	1e-12	1.11448e-8	2.25522e-10
chr13	46127491	46127590	14009615	0	-	0.59596	(0.59,1]	chr13	1098488	17	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.11074	3.77655	5.44236	0.0305	2.02004e-4	0.130204	0.00317801
chr17	42514383	42514460	16228749	0	+	0.61039	(0.59,1]	chr17	1312998	2	CDS	CDS:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	ATP6V0A1:MIR5010	ENSG00000033627.17:ENSG00000283929.1	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000582846.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	2	47	2	2.19052	3.776275	5.36203	0.0237927	3.74697e-4	0.109413	0.00560631
chr19	16525415	16525502	17491297	0	-	0.758621	(0.59,1]	chr19	1466446	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6:ENST00000544299.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.19052	3.776275	5.36203	0.0237927	3.74697e-4	0.109413	0.00560631
chr6	27146607	27146698	7648722	0	-	0.549451	(0.53,0.59]	chr6	582722	2	CDS	CDS:EXON_MRNA	H2BC12	ENSG00000197903.8	ENST00000356950.2	protein_coding	protein_coding	protein_coding	protein_coding	19	319	2	2.89847	3.7761649999999998	4.65386	1.79956e-6	1.54088e-12	6.55429e-5	3.61627e-10
chr14	105143559	105143638	14799986	0	-	0.708861	(0.59,1]	chr14	1160104	2	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	3.28861	3.7760749999999996	4.26354	0.0134233	0.0028753	0.0743429	0.0256141
chr1	161673959	161674016	501571	0	+	0.561404	(0.53,0.59]	chr1	54368	1	CDS	CDS:EXON_MRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.515	3.7760249999999997	5.03705	0.0292633	0.00020199200000000001	0.129773	0.00317801
chr6	44150223	44150310	7160994	0	+	0.551724	(0.53,0.59]	chr6	553594	1	CDS	CDS:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.515	3.7760249999999997	5.03705	0.0292633	0.00020199200000000001	0.129773	0.00317801
chr14	20316523	20316560	14517256	0	-	0.486486	(0.455,0.49]	chr14	1136481	1	CDS	CDS:UTR5:EXON_MRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.12843	3.77596	4.42349	0.00392855	3.27827e-6	0.0322851	1.08637e-4
chr1	26781237	26781333	111025	0	+	0.489583	(0.455,0.49]	chr1	13356	6	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.37741	3.77574	4.17407	1.27402e-4	1.754e-5	0.00241206	4.38078e-4
chr11	75404148	75404163	12023091	0	+	0.533333	(0.53,0.59]	chr11	926984	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000528847.1:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.11275	3.77569	4.43863	0.00407571	0.00254763	0.032143	0.0233955
chr13	98014041	98014127	13859192	0	+	0.55814	(0.53,0.59]	chr13	1086707	1	CDS	CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.11275	3.77569	4.43863	0.00407571	0.00254763	0.032143	0.0233955
chr17	28879334	28879428	16488311	0	-	0.531915	(0.53,0.59]	chr17	1348326	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	3.11275	3.77569	4.43863	0.00407571	0.00254763	0.032143	0.0233955
chr17	47650244	47650284	16251625	0	+	0.55	(0.53,0.59]	chr17	1316631	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.11275	3.77569	4.43863	0.00407571	0.00254763	0.032143	0.0233955
chrX	119871911	119872011	18841949	0	+	0.56	(0.53,0.59]	chrX	1605622	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	10	158	2	3.17965	3.7755349999999996	4.37142	1.73234e-6	8.90384e-9	6.35589e-5	7.65338e-7
chr19	11113534	11113610	17230112	0	+	0.631579	(0.59,1]	chr19	1419589	1	CDS	CDS:EXON_MRNA:PRIMIRNA	LDLR:MIR6886	ENSG00000130164.14:ENSG00000284553.1	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000619864.1:ENST00000559340.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	5	130	2	3.05313	3.7755	4.49787	9.44977e-5	9.22386e-6	0.00172285	2.83868e-4
chr21	14373716	14373810	18163691	0	-	0.478723	(0.455,0.49]	chr21	1542399	1	CDS	CDS:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	3.11002	3.7754000000000003	4.44078	1.15314e-4	2.6997e-6	0.0020426	1.01511e-4
chr10	74097203	74097267	11117425	0	+	0.484375	(0.455,0.49]	chr10	846257	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	3.46389	3.775375	4.08686	9.14164e-4	9.7689e-7	0.0110519	3.91836e-5
chr7	786109	786201	8093297	0	+	0.326087	(0.29,0.33]	chr7	618354	6	UTR3	UTR3:EXON_MRNA	DNAAF5	ENSG00000164818.16	ENST00000297440.11	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.13212	3.7751200000000003	4.41812	0.00551048	0.00162106	0.0414592	0.0161179
chr17	78170754	78170854	16367704	0	+	0.65	(0.59,1]	chr17	1329556	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000591770.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.32455	3.7750199999999996	5.22549	0.0520547	5.13843e-4	0.193787	0.00665221
chr21	33552414	33552513	18101181	0	+	0.494949	(0.49,0.53]	chr21	1534527	18	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	62	2	2.84493	3.774895	4.70486	5.26587e-4	3.98937e-7	0.00679103	2.04083e-5
chr9	131198115	131198215	10496368	0	+	0.57	(0.53,0.59]	chr9	793351	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	244	2	3.59976	3.7748299999999997	3.9499	1.38517e-8	4.90936e-9	1.02799e-6	4.54263e-7
chr11	4133562	4133658	11774426	0	+	0.40625	(0.39,0.42]	chr11	901042	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	3.05461	3.77473	4.49485	8.55091e-4	1.93637e-6	0.0105173	6.9799e-5
chr2	86492417	86492517	1927466	0	+	0.42	(0.39,0.42]	chr2	181683	4	UTR3	UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000491383.5:ENST00000470160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	3.1241	3.7744150000000003	4.42473	3.0762e-5	3.06235e-6	6.89383e-4	1.13887e-4
chr5	142131807	142131895	6262535	0	+	0.522727	(0.49,0.53]	chr5	488686	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000509436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.60653	3.7741499999999997	3.94177	0.0104929	4.50981e-4	0.063428	0.00605268
chr7	73693991	73694050	8332381	0	+	0.491525	(0.49,0.53]	chr7	634585	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.60653	3.7741499999999997	3.94177	0.0104929	4.50981e-4	0.063428	0.00605268
chr7	107935575	107935656	8987331	0	-	0.506173	(0.49,0.53]	chr7	687596	3	CDS	CDS:UTR3:EXON_MRNA	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000678310.1:ENST00000468999.2:ENST00000474380.2:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000491196.2:ENST00000678346.1:ENST00000679173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.60653	3.7741499999999997	3.94177	0.0104929	4.50981e-4	0.063428	0.00605268
chr12	110346562	110346654	13085915	0	+	0.380435	(0.36,0.39]	chr12	1020554	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	76	2	2.92667	3.774045	4.62142	1.07636e-5	7.26179e-7	2.9314e-4	3.39859e-5
chr9	35061576	35061632	10638115	0	-	0.464286	(0.455,0.49]	chr9	804518	1	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	3.3605	3.774035	4.18757	0.00147278	4.43488e-7	0.0157578	1.99826e-5
chr12	57498156	57498214	12902837	0	+	0.551724	(0.53,0.59]	chr12	1005371	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551892.1:ENST00000552371.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.35511	3.7739949999999998	5.19288	0.0445399	9.22873e-5	0.172163	0.0016906
chr7	103515184	103515269	8963402	0	-	0.564706	(0.53,0.59]	chr7	686125	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.35511	3.7739949999999998	5.19288	0.0445399	9.22873e-5	0.172163	0.0016906
chr8	143991877	143991976	9649802	0	+	0.555556	(0.53,0.59]	chr8	731407	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000529301.5:ENST00000531992.1:ENST00000534791.5:ENST00000525513.1:ENST00000533044.5:ENST00000527194.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.35511	3.7739949999999998	5.19288	0.0445399	9.22873e-5	0.172163	0.0016906
chr16	89407655	89407755	16078404	0	-	0.5	(0.49,0.53]	chr16	1292236	35	INTRON	INTRON	ANKRD11:GS2-740I5.1	ENSG00000167522.16:ENSG00000288715.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000683497.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.8681	3.77391	4.67972	0.00175299	6.94757e-4	0.0171299	0.00876781
chr2	26134937	26135021	1685699	0	+	0.5	(0.49,0.53]	chr2	164738	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.8681	3.77391	4.67972	0.00175299	6.94757e-4	0.0171299	0.00876781
chr1	2309917	2310015	7405	0	+	0.479592	(0.455,0.49]	chr1	1667	33	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.65545	3.7739000000000003	3.89235	3.50134e-4	9.60445e-5	0.0049086	0.00190731
chr12	51240870	51240898	12876207	0	+	0.571429	(0.53,0.59]	chr12	1000604	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000552173.5:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	3.62204	3.773885	3.92573	4.3021e-4	8.62301e-5	0.00620274	0.00160749
chr6	44148581	44148650	7160972	0	+	0.57971	(0.53,0.59]	chr6	553580	2	CDS	CDS:UTR3:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000534326.5:ENST00000371893.6:ENST00000497371.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	3.62204	3.773885	3.92573	4.3021e-4	8.62301e-5	0.00620274	0.00160749
chr12	6970443	6970543	13188919	0	-	0.74	(0.59,1]	chr12	1032818	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1:ENST00000542294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	151	2	3.52314	3.7738750000000003	4.02461	2.17707e-5	5.32274e-6	5.73793e-4	1.62953e-4
chr13	39022325	39022412	13976324	0	-	0.45977	(0.455,0.49]	chr13	1096578	1	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000602512.1:ENST00000496138.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	37	2	3.73142	3.7738300000000002	3.81624	2.35261e-4	1.48205e-4	0.00356397	0.00269793
chr3	195785937	195786036	4661126	0	-	0.565657	(0.53,0.59]	chr3	385270	73	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	3.61102	3.7737499999999997	3.93648	8.06385e-5	3.01487e-5	0.00167444	6.78876e-4
chr16	29484689	29484783	15909899	0	-	0.56383	(0.53,0.59]	chr16	1274266	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-345J4.11:NPIPB12	ENSG00000288632.1:ENSG00000169203.16	ENST00000675579.1:ENST00000458643.3:ENST00000550665.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	26	2	2.50447	3.7737249999999998	5.04298	0.0301162	1.91383e-4	0.130016	0.0032874
chr4	2929784	2929881	4687502	0	+	0.56701	(0.53,0.59]	chr4	388871	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.50447	3.7737249999999998	5.04298	0.0301162	1.91383e-4	0.130016	0.0032874
chr11	44232352	44232424	11927466	0	+	0.569444	(0.53,0.59]	chr11	911605	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1:ENST00000684437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.38347	3.77365	4.16383	0.00659193	0.00132446	0.0454205	0.0138834
chr15	72344076	72344140	15369424	0	-	0.5625	(0.53,0.59]	chr15	1214414	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000565873.1:ENST00000564677.5:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.38347	3.77365	4.16383	0.00659193	0.00132446	0.0454205	0.0138834
chr17	42613848	42613944	16229311	0	+	0.583333	(0.53,0.59]	chr17	1313168	1	CDS	CDS:UTR3:EXON_MRNA	TUBG1	ENSG00000131462.9	ENST00000680678.1:ENST00000681413.1:ENST00000680672.1:ENST00000681490.1:ENST00000681947.1:ENST00000588056.2:ENST00000251413.8:ENST00000591509.5:ENST00000589688.2:ENST00000681919.1:ENST00000681114.1:ENST00000680617.1:ENST00000679484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.38347	3.77365	4.16383	0.00659193	0.00132446	0.0454205	0.0138834
chr17	59838345	59838397	16296962	0	+	0.557692	(0.53,0.59]	chr17	1321860	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.38347	3.77365	4.16383	0.00659193	0.00132446	0.0454205	0.0138834
chr19	16553579	16553678	17491593	0	-	0.535354	(0.53,0.59]	chr19	1466498	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	26	2	3.38347	3.77365	4.16383	0.00659193	0.00132446	0.0454205	0.0138834
chr20	38128849	38128947	17962919	0	-	0.581633	(0.53,0.59]	chr20	1522305	16	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	3.38347	3.77365	4.16383	0.00659193	0.00132446	0.0454205	0.0138834
chr1	31681167	31681267	919521	0	-	0.63	(0.59,1]	chr1	96493	1	SS3_PROX	SS3_PROX:INTRON	COL16A1	ENSG00000084636.18	ENST00000373672.8:ENST00000458715.5:ENST00000373668.7	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.20238	3.773625	4.34487	0.0123678	4.79306e-4	0.0705839	0.00629006
chr1	223775727	223775824	727600	0	+	0.319588	(0.29,0.33]	chr1	73491	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5:ENST00000463997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.92065	3.77348	4.62631	0.0117842	6.57711e-7	0.0686664	2.80312e-5
chr1	180112724	180112822	582456	0	+	0.357143	(0.33,0.36]	chr1	60512	17	UTR3	UTR3:EXON_MRNA	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000417046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.02394	3.7733	4.52266	8.89743e-4	8.34989e-4	0.0102956	0.0102057
chrX	49562545	49562605	18694991	0	+	0.533333	(0.53,0.59]	chrX	1594973	1	CDS	CDS:EXON_MRNA	GAGE12F	ENSG00000236362.8	ENST00000639028.1:ENST00000440137.1	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	3.53663	3.7732900000000003	4.00995	4.77731e-5	1.99748e-6	0.00109049	7.14901e-5
chr11	67285450	67285544	11995177	0	+	0.351064	(0.33,0.36]	chr11	922727	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GRK2	ENSG00000173020.11	ENST00000308595.10:ENST00000526285.1:ENST00000416281.6:ENST00000529738.1:ENST00000524899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	2.86073	3.773165	4.6856	0.0105608	3.92435e-4	0.0644466	0.00583618
chr7	29064060	29064147	8744932	0	-	0.333333	(0.33,0.36]	chr7	667255	1	CDS	CDS:EXON_MRNA:INTRON	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.51887	3.7730250000000005	5.02718	0.0358636	2.44257e-8	0.147298	1.67651e-6
chr5	75359984	75360061	6037164	0	+	0.519481	(0.49,0.53]	chr5	473664	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000509085.5:ENST00000511986.1:ENST00000512053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.69746	3.77245	4.84744	0.00380414	3.70203e-4	0.0317723	0.00515475
chr16	163121	163216	15480668	0	+	0.568421	(0.53,0.59]	chr16	1224156	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	8	135	2	3.3422	3.772435	4.20267	2.39097e-6	3.8911e-8	8.33915e-5	2.74855e-6
chr6	26217267	26217367	7101607	0	+	0.61	(0.59,1]	chr6	542861	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC8	ENSG00000277075.2	ENST00000303910.4	protein_coding	protein_coding	protein_coding	protein_coding	5	153	2	3.73368	3.7723500000000003	3.81102	3.43356e-5	3.13265e-6	8.37726e-4	1.04757e-4
chr16	16044449	16044526	15567755	0	+	0.571429	(0.53,0.59]	chr16	1232707	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	3.61856	3.772145	3.92573	0.0303021	8.62301e-5	0.129773	0.00160749
chr20	56386440	56386533	18019855	0	-	0.483871	(0.455,0.49]	chr20	1527188	3	CDS	CDS:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5:ENST00000420474.5:ENST00000422322.5:ENST00000456249.5:ENST00000451915.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.93369	3.77212	5.61055	0.00999269	3.16146e-6	0.0620664	1.16228e-4
chr10	21742854	21742951	10961926	0	+	0.474227	(0.455,0.49]	chr10	834209	10	UTR3	UTR3:EXON_MRNA	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	3.73142	3.7720849999999997	3.81275	0.0138827	2.35261e-4	0.0760883	0.00356397
chr7	143264547	143264611	8580784	0	+	0.484375	(0.455,0.49]	chr7	655583	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSTK1	ENSG00000197448.14	ENST00000436038.5:ENST00000409500.7:ENST00000358406.10:ENST00000443571.6:ENST00000442394.5:ENST00000479303.1:ENST00000494735.1:ENST00000473649.1:ENST00000489654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.73142	3.7720849999999997	3.81275	0.0138827	2.35261e-4	0.0760883	0.00356397
chr10	12230947	12230996	10926995	0	+	0.326531	(0.29,0.33]	chr10	831983	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC123	ENSG00000151465.14	ENST00000429258.6:ENST00000455773.7:ENST00000281141.9:ENST00000378900.6:ENST00000442050.5:ENST00000498747.1:ENST00000440613.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.59395	3.7720000000000002	4.95005	0.0249836	9.78718e-5	0.114013	0.0019344
chr13	79548335	79548394	13800294	0	+	0.322034	(0.29,0.33]	chr13	1085535	1	CDS	CDS:UTR3:EXON_MRNA	NDFIP2	ENSG00000102471.14	ENST00000612570.4:ENST00000218652.11:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.59395	3.7720000000000002	4.95005	0.0249836	9.78718e-5	0.114013	0.0019344
chr16	22534123	22534222	15591467	0	+	0.545455	(0.53,0.59]	chr16	1236299	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	27	2	2.34461	3.77172	5.19883	0.0457008	8.7034e-5	0.168044	0.00177086
chr16	27494835	27494908	15899739	0	-	0.589041	(0.53,0.59]	chr16	1273038	2	CDS	CDS:EXON_MRNA:INTRON	GTF3C1	ENSG00000077235.18	ENST00000561623.5:ENST00000356183.9:ENST00000569653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.34461	3.77172	5.19883	0.0457008	8.7034e-5	0.168044	0.00177086
chr16	70560468	70560529	15730048	0	+	0.540984	(0.53,0.59]	chr16	1252975	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.34461	3.77172	5.19883	0.0457008	8.7034e-5	0.168044	0.00177086
chr11	46744486	46744577	12383486	0	-	0.56044	(0.53,0.59]	chr11	955991	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.5393	3.771615	4.00393	0.0108084	6.46017e-4	0.064368	0.00799743
chr17	53757086	53757184	16598923	0	-	0.561224	(0.53,0.59]	chr17	1363765	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-213B3.1:RPS2P48	ENSG00000285939.2:ENSG00000233380.1	ENST00000650577.1:ENST00000441047.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	27	2	3.5393	3.771615	4.00393	0.0108084	6.46017e-4	0.064368	0.00799743
chr19	17579481	17579545	17254794	0	+	0.53125	(0.53,0.59]	chr19	1424478	1	CDS	CDS:EXON_MRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000597147.1:ENST00000597075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	3.5393	3.771615	4.00393	0.0108084	6.46017e-4	0.064368	0.00799743
chr11	9288441	9288491	12265189	0	-	0.38	(0.36,0.39]	chr11	948412	1	CDS	CDS:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	50	2	3.31072	3.7716	4.23248	3.24695e-5	1.28371e-5	7.18962e-4	3.70041e-4
chr6	137198469	137198554	7988059	0	-	0.494118	(0.49,0.53]	chr6	610795	5	CDS	CDS:UTR3:EXON_MRNA	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	3.73494	3.771595	3.80825	0.0189345	7.68944e-6	0.0934721	2.20857e-4
chr2	11551678	11551777	1634251	0	+	0.535354	(0.53,0.59]	chr2	162168	85	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2:ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	3.72515	3.77126	3.81737	1.8264e-6	8.97065e-7	6.64372e-5	4.03386e-5
chr7	4767651	4767751	8109635	0	+	0.38	(0.36,0.39]	chr7	619657	53	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.18029	3.7710999999999997	5.36191	0.0077769	1.79406e-5	0.0517139	4.45904e-4
chr4	41939289	41939383	4809330	0	+	0.43617	(0.42,0.455]	chr4	396922	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000510383.1:ENST00000504986.6:ENST00000506794.1:ENST00000513558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	61	2	3.70487	3.7709200000000003	3.83697	1.55091e-5	6.30836e-6	3.95473e-4	2.05914e-4
chr5	98855880	98855979	6725374	0	-	0.363636	(0.36,0.39]	chr5	517718	20	UTR3	UTR3:EXON_MRNA	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000512392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.42114	3.7708399999999997	5.12054	0.00564641	7.15553e-5	0.0422191	0.00137393
chr7	42935048	42935148	8253288	0	+	0.41	(0.39,0.42]	chr7	628541	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL32	ENSG00000106591.4	ENST00000223324.3:ENST00000432845.1:ENST00000413995.1:ENST00000496564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.60131	3.770635	3.93996	0.00841622	4.60576e-4	0.054565	0.00611208
chr1	19220763	19220848	877149	0	-	0.541176	(0.53,0.59]	chr1	90432	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000461353.1:ENST00000486405.1:ENST00000486238.1:ENST00000494770.6:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	1.70379	3.77055	5.8373100000000004	0.0330081	2.06883e-6	0.138711	7.35008e-5
chr10	74118767	74118867	11117655	0	+	0.38	(0.36,0.39]	chr10	846311	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	79	2	3.12614	3.77051	4.41488	1.44599e-5	6.32047e-8	4.07816e-4	3.77198e-6
chr11	74254106	74254205	12016984	0	+	0.666667	(0.59,1]	chr11	926524	7	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	161	2	2.29069	3.7703750000000005	5.25006	0.00164656	6.08177e-8	0.0171652	3.65138e-6
chr18	57602877	57602943	17137479	0	-	0.454545	(0.42,0.455]	chr18	1407145	2	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	3.23839	3.77008	4.30177	2.92986e-4	7.69083e-6	0.00464297	2.20857e-4
chr5	149494569	149494668	6910237	0	-	0.313131	(0.29,0.33]	chr5	528470	17	UTR3	UTR3:EXON_MRNA	CSNK1A1:CTB-89H12.4	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	22	2	2.22218	3.769965	5.31775	0.023782	1.06766e-5	0.109413	3.17854e-4
chr2	26204061	26204128	2565775	0	-	0.462687	(0.455,0.49]	chr2	230575	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.99447	3.7696549999999998	5.54484	0.012436	4.89523e-6	0.0712518	1.67428e-4
chr5	17354066	17354159	6473544	0	-	0.473118	(0.455,0.49]	chr5	503559	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	FTH1P10	ENSG00000223361.5	ENST00000401830.3:ENST00000430907.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	7	121	2	3.31171	3.769635	4.22756	1.87327e-4	7.21411e-10	0.00325006	7.83097e-8
chrX	55009179	55009260	19084554	0	-	0.530864	(0.53,0.59]	chrX	1623730	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	3.2425	3.7694400000000003	4.29638	2.6381e-4	2.26633e-7	0.00427022	1.12729e-5
chr1	40268418	40268476	152977	0	+	0.465517	(0.455,0.49]	chr1	19151	1	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.12843	3.7694199999999998	4.41041	0.00392855	0.00218771	0.0322851	0.0202707
chr1	153645169	153645269	478436	0	+	0.46	(0.455,0.49]	chr1	49170	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.12843	3.7694199999999998	4.41041	0.00392855	0.00218771	0.0322851	0.0202707
chr11	44244148	44244187	11927588	0	+	0.487179	(0.455,0.49]	chr11	911622	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000528159.1:ENST00000684437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	3.12843	3.7694199999999998	4.41041	0.00392855	0.00218771	0.0322851	0.0202707
chr6	30601074	30601169	7658381	0	-	0.473684	(0.455,0.49]	chr6	583973	8	UTR3	UTR3:EXON_MRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.12843	3.7694199999999998	4.41041	0.00392855	0.00218771	0.0322851	0.0202707
chr7	76340028	76340128	8863516	0	-	0.47	(0.455,0.49]	chr7	677481	94	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.12843	3.7694199999999998	4.41041	0.00392855	0.00218771	0.0322851	0.0202707
chr19	55385931	55386016	17396149	0	+	0.682353	(0.59,1]	chr19	1448665	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000431533.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	121	3342	2	3.38193	3.76926	4.15659	1.66083e-8	1.81655e-11	1.31502e-6	2.97261e-9
chr5	160424236	160424330	6338681	0	+	0.393617	(0.39,0.42]	chr5	493678	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000517480.1:ENST00000523659.5:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	113	2	3.56585	3.76926	3.97267	2.18461e-7	1.18034e-7	1.22927e-5	6.44442e-6
chr4	143875410	143875509	5695966	0	-	0.525253	(0.49,0.53]	chr4	451440	2	UTR3	UTR3:EXON_MRNA:INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.25514	3.76923	4.28332	0.00338762	0.00227467	0.0288632	0.0209546
chr16	11351178	11351275	15543387	0	+	0.463918	(0.455,0.49]	chr16	1231099	5	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000576027.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.9967	3.76922	4.54174	0.00650423	0.00130137	0.0454205	0.0136936
chr17	44851273	44851369	16559905	0	-	0.458333	(0.455,0.49]	chr17	1359683	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.9967	3.76922	4.54174	0.00650423	0.00130137	0.0454205	0.0136936
chr20	49646964	49647021	18003305	0	-	0.473684	(0.455,0.49]	chr20	1525901	1	CDS	CDS:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.9967	3.76922	4.54174	0.00650423	0.00130137	0.0454205	0.0136936
chr22	20707779	20707868	18438500	0	-	0.47191	(0.455,0.49]	chr22	1571791	2	UTR3	UTR3:EXON_MRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000492581.5:ENST00000477245.5:ENST00000466772.5:ENST00000399213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.9967	3.76922	4.54174	0.00650423	0.00130137	0.0454205	0.0136936
chr13	95210691	95210781	14111299	0	-	0.466667	(0.455,0.49]	chr13	1104466	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.46624	3.76898	5.07172	0.0094145	8.3067e-5	0.0592633	0.00171126
chr7	108574251	108574351	8457673	0	+	0.3	(0.29,0.33]	chr7	646360	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DNAJB9	ENSG00000128590.5	ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	3.08261	3.7689749999999997	4.45534	0.0048227	0.00110984	0.0365653	0.0127344
chr8	99076924	99077024	9510660	0	+	0.33	(0.29,0.33]	chr8	723103	205	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.08261	3.7689749999999997	4.45534	0.0048227	0.00110984	0.0365653	0.0127344
chr20	45420616	45420693	17801663	0	+	0.506494	(0.49,0.53]	chr20	1505110	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000640649.1:ENST00000638927.1:ENST00000639239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.69746	3.768655	4.83985	0.00380414	1.50325e-7	0.0317723	7.97048e-6
chr1	15567977	15568077	69115	0	+	0.56	(0.53,0.59]	chr1	7732	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375847.8:ENST00000483270.1:ENST00000490811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr1	20500689	20500789	882061	0	-	0.58	(0.53,0.59]	chr1	91075	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MUL1	ENSG00000090432.7	ENST00000264198.5	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr1	35560518	35560615	137551	0	+	0.587629	(0.53,0.59]	chr1	16988	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NCDN	ENSG00000020129.16	ENST00000373253.7:ENST00000356090.8:ENST00000373243.7:ENST00000459931.1:ENST00000437806.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr11	57332778	57332855	12394115	0	-	0.558442	(0.53,0.59]	chr11	958546	3	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6:ENST00000529002.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr11	66243963	66244060	11989344	0	+	0.536082	(0.53,0.59]	chr11	921512	8	UTR3	UTR3:EXON_MRNA	PACS1	ENSG00000175115.13	ENST00000320580.9	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr11	72003147	72003241	12447022	0	-	0.56383	(0.53,0.59]	chr11	967219	4	UTR3	UTR3:EXON_MRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000541584.5:ENST00000540626.5:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr12	120134290	120134347	13579055	0	-	0.561404	(0.53,0.59]	chr12	1068545	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr13	28598925	28599019	13661079	0	+	0.531915	(0.53,0.59]	chr13	1076705	2	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P7	ENSG00000235472.1	ENST00000421800.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr16	1375557	1375655	15820404	0	-	0.540816	(0.53,0.59]	chr16	1261015	36	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7:ENST00000402641.6:ENST00000513783.1:ENST00000515195.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr16	56466151	56466209	15678882	0	+	0.568965	(0.53,0.59]	chr16	1246341	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	OGFOD1	ENSG00000087263.17	ENST00000561646.5:ENST00000562150.5:ENST00000569802.5:ENST00000336111.9:ENST00000568172.1:ENST00000566157.6:ENST00000568397.1:ENST00000565209.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr16	85373944	85374044	15795057	0	+	0.56	(0.53,0.59]	chr16	1256986	146	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr17	42200850	42200949	16546627	0	-	0.585859	(0.53,0.59]	chr17	1357142	18	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr19	11447064	11447073	17231240	0	+	0.555556	(0.53,0.59]	chr19	1419918	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585325.5:ENST00000592445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr2	74530430	74530512	1892325	0	+	0.560976	(0.53,0.59]	chr2	179396	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HTRA2	ENSG00000115317.12	ENST00000462909.5:ENST00000467961.5:ENST00000484881.5:ENST00000258080.8:ENST00000352222.7:ENST00000437202.1:ENST00000484352.5:ENST00000465521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr2	85553231	85553319	2770721	0	-	0.579545	(0.53,0.59]	chr2	245819	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GGCX	ENSG00000115486.12	ENST00000233838.9:ENST00000465637.5:ENST00000430215.7:ENST00000473665.1:ENST00000482662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr21	43750745	43750845	18136098	0	+	0.58	(0.53,0.59]	chr21	1538337	2	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr22	49641035	49641135	18544286	0	-	0.58	(0.53,0.59]	chr22	1583984	136	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr4	150599068	150599131	5728820	0	-	0.587302	(0.53,0.59]	chr4	452801	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr5	16902467	16902554	6471907	0	-	0.54023	(0.53,0.59]	chr5	503503	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	MYO10:RPS26P28	ENSG00000145555.15:ENSG00000243538.1	ENST00000513610.6:ENST00000274203.13:ENST00000513882.5:ENST00000502436.5:ENST00000507288.1:ENST00000470806.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr7	44385910	44386010	8798710	0	-	0.59	(0.53,0.59]	chr7	671096	69	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000487118.1:ENST00000475952.1:ENST00000338427.10:ENST00000493613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr9	128634225	128634304	10864873	0	-	0.582278	(0.53,0.59]	chr9	823694	1	CDS	CDS:EXON_MRNA	DYNC2I2	ENSG00000119333.12	ENST00000372715.7	protein_coding	protein_coding	protein_coding	protein_coding	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr9	131258957	131259055	10870346	0	-	0.561224	(0.53,0.59]	chr9	824566	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	14	2	3.3733	3.7685649999999997	4.16383	0.0529193	0.00659193	0.18423900000000001	0.0454205
chr1	40422949	40423043	154045	0	+	0.308511	(0.29,0.33]	chr1	19281	10	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	2.97569	3.76843	4.56117	2.95962e-5	7.94253e-10	7.34242e-4	8.54721e-8
chr15	57953718	57953817	15305091	0	-	0.353535	(0.33,0.36]	chr15	1208082	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	132	2	3.44042	3.7684249999999997	4.09643	3.56679e-8	1.26105e-8	2.3087e-6	1.03537e-6
chr11	65121591	65121644	12421568	0	-	0.584906	(0.53,0.59]	chr11	963724	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAU	ENSG00000149806.11	ENST00000529639.6:ENST00000531743.5:ENST00000527548.5:ENST00000525297.5:ENST00000531357.1:ENST00000279259.7:ENST00000529259.1:ENST00000526555.5:ENST00000434372.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	158	2	2.55584	3.76841	4.98098	4.59735e-5	5.93885e-10	9.56296e-4	7.26693e-8
chr1	87073083	87073172	341091	0	+	0.382022	(0.36,0.39]	chr1	33600	1	CDS	CDS:EXON_MRNA	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370551.8:ENST00000591456.1:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.29474	3.76834	4.24194	0.00276729	0.00194306	0.0247437	0.0185233
chr12	21654571	21654671	13236805	0	-	0.43	(0.42,0.455]	chr12	1037981	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000450584.5:ENST00000539782.1:ENST00000544151.1:ENST00000535112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	106	2	2.83935	3.76816	4.69697	2.08187e-5	4.48797e-9	5.02683e-4	4.20932e-7
chr10	59792618	59792717	11517225	0	-	0.414141	(0.39,0.42]	chr10	877718	40	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	3.44923	3.768125	4.08702	0.00105208	3.01232e-5	0.0123035	6.78876e-4
chr6	53267682	53267778	7740158	0	-	0.270833	[0,0.29]	chr6	594337	4	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.11257	3.767935	4.4233	0.00120521	3.05074e-6	0.0134827	1.02351e-4
chr11	27483849	27483942	11875827	0	+	0.451613	(0.42,0.455]	chr11	907968	1	EXON_PSEUDO	EXON_PSEUDO	RP11-159H22.1	ENSG00000242527.1	ENST00000496450.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	65	2	3.05889	3.76791	4.47693	0.00524205	4.11083e-8	0.0399155	2.60573e-6
chr14	58252184	58252239	14311270	0	+	0.345455	(0.33,0.36]	chr14	1118489	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5:ENST00000556321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	3.03552	3.76766	4.4998	0.0012034	1.74876e-6	0.0134762	6.39864e-5
chr5	146153173	146153227	6891462	0	-	0.444444	(0.42,0.455]	chr5	527545	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	3.73638	3.767595	3.79881	1.65328e-4	1.4989e-6	0.0029267300000000002	5.63087e-5
chr4	75642942	75643041	5472842	0	-	0.30303	(0.29,0.33]	chr4	438361	12	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.73178	3.7675	4.80322	0.00360855	2.14303e-4	0.0296421	0.00359478
chr11	61302666	61302751	12403912	0	-	0.588235	(0.53,0.59]	chr11	960180	2	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000540166.5:ENST00000538470.2:ENST00000679855.1:ENST00000539332.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.5766	3.767425	4.95825	8.34608e-4	2.87508e-4	0.00978328	0.00457439
chr6	158508174	158508273	7521083	0	+	0.50505	(0.49,0.53]	chr6	573916	16	UTR3	UTR3:EXON_MRNA	TULP4	ENSG00000130338.13	ENST00000367097.8:ENST00000367094.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	1.99044	3.76717	5.5439	0.0435903	8.44877e-6	0.170594	2.39255e-4
chr8	96304039	96304110	9498967	0	+	0.521127	(0.49,0.53]	chr8	722469	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000518776.1:ENST00000522072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	1.99044	3.76717	5.5439	0.0435903	8.44877e-6	0.170594	2.39255e-4
chrX	302963	303061	18549192	0	+	0.418367	(0.39,0.42]	chrX	1585413	38	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	3.59663	3.7670000000000003	3.93737	7.80292e-5	4.26553e-6	0.00162998	1.35769e-4
chrX	154381097	154381197	18917490	0	+	0.54	(0.53,0.59]	chrX	1611788	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMD	ENSG00000102119.12	ENST00000369835.3:ENST00000369842.9:ENST00000486738.5:ENST00000428228.5:ENST00000682114.1:ENST00000684678.1:ENST00000683627.1:ENST00000684082.1:ENST00000684633.1:ENST00000682478.1:ENST00000683576.1:ENST00000492448.1:ENST00000471965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	94	2	3.08958	3.766985	4.44439	1.30551e-4	6.85238e-8	0.0024373	4.04103e-6
chrX	86160860	86160960	19141873	0	-	0.53	(0.49,0.53]	chrX	1627919	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P29	ENSG00000215093.3	ENST00000416082.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	66	2	3.68088	3.76666	3.85244	1.82756e-5	5.52735e-6	4.52458e-4	1.83781e-4
chr4	57030988	57031073	4851296	0	+	0.282353	[0,0.29]	chr4	399868	1	UTR3	UTR3:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.80134	3.7665100000000002	4.73168	0.0049344	3.88478e-4	0.0379087	0.00534839
chr4	87892434	87892533	4942240	0	+	0.40404	(0.39,0.42]	chr4	406011	7	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	92	2	3.05257	3.766405	4.48024	8.21746e-6	3.39607e-8	2.34686e-4	2.44856e-6
chr2	177538986	177539085	2230158	0	+	0.363636	(0.36,0.39]	chr2	203559	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.32678	3.76617	5.20556	0.0193538	4.46552e-5	0.0943643	9.34801e-4
chr15	57954014	57954112	15305094	0	-	0.561224	(0.53,0.59]	chr15	1208082	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	146	2	3.34941	3.766025	4.18264	9.26115e-7	4.61724e-8	3.75136e-5	3.18288e-6
chr16	31528591	31528691	15635496	0	+	0.59	(0.53,0.59]	chr16	1241823	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	AHSP	ENSG00000169877.10	ENST00000302312.9:ENST00000569954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.0042	3.76593	5.52766	0.0113999	1.38993e-5	0.0668496	3.94563e-4
chr22	21621569	21621669	18303177	0	+	0.4	(0.39,0.42]	chr22	1554194	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	3.36523	3.76593	4.16663	2.21919e-5	1.84729e-5	5.28886e-4	5.02409e-4
chr2	74214926	74215023	1891748	0	+	0.268041	[0,0.29]	chr2	179209	8	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	87	2	3.66318	3.7659200000000004	3.86866	1.37143e-6	1.94848e-8	5.73713e-5	1.37715e-6
chr8	26351862	26351959	9238147	0	+	0.319588	(0.29,0.33]	chr8	707491	8	INTRON	INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000520329.5:ENST00000518254.5:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000521095.5:ENST00000660435.1:ENST00000523925.5:ENST00000524099.5:ENST00000315985.7:ENST00000519636.5:ENST00000522482.5:ENST00000521557.5:ENST00000519439.5:ENST00000521484.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	3.48001	3.76589	4.05177	0.00126219	3.72769e-5	0.013837	8.08834e-4
chr14	30889974	30890066	14201305	0	+	0.358696	(0.33,0.36]	chr14	1112921	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.7655	3.7658750000000003	4.76625	0.0175892	3.84608e-4	0.0918323	0.00531017
chr2	9583966	9584060	2508153	0	-	0.340426	(0.33,0.36]	chr2	226349	1	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.7655	3.7658750000000003	4.76625	0.0175892	3.84608e-4	0.0918323	0.00531017
chr6	149811321	149811420	7482135	0	+	0.353535	(0.33,0.36]	chr6	571814	8	UTR3	UTR3:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.7655	3.7658750000000003	4.76625	0.0175892	3.84608e-4	0.0918323	0.00531017
chr12	54232873	54232972	13342855	0	-	0.373737	(0.36,0.39]	chr12	1049602	15	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	3.20887	3.76576	4.32265	8.51229e-5	6.3224e-6	0.00174655	1.88366e-4
chr3	9893186	9893277	3300578	0	+	0.527473	(0.49,0.53]	chr3	290134	4	CDS	CDS:UTR3:EXON_MRNA	JAGN1	ENSG00000171135.15	ENST00000489724.2:ENST00000647897.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.51981	3.76576	4.01171	6.88328e-4	4.88513e-5	0.00876781	0.00100497
chr1	83981769	83981869	1130152	0	-	0.47	(0.455,0.49]	chr1	112520	2	SS3_PROX	SS3_PROX:INTRON	TTLL7:TTLL7-IT1	ENSG00000137941.17:ENSG00000233061.1	ENST00000260505.13:ENST00000474957.5:ENST00000488014.5:ENST00000477524.5:ENST00000610996.1:ENST00000482783.1:ENST00000455929.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr11	47524523	47524609	12387385	0	-	0.488372	(0.455,0.49]	chr11	957043	1	UTR5	UTR5:EXON_MRNA:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000531165.5:ENST00000530151.5:ENST00000525841.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr11	65113490	65113542	11982442	0	+	0.480769	(0.455,0.49]	chr11	919871	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TM7SF2	ENSG00000149809.17	ENST00000526809.5:ENST00000524986.5:ENST00000279263.14:ENST00000534371.5:ENST00000533766.5:ENST00000528026.5:ENST00000529601.5:ENST00000525385.5:ENST00000345348.9:ENST00000531321.5:ENST00000529292.5:ENST00000529414.5:ENST00000526085.5:ENST00000530650.5:ENST00000530750.5:ENST00000524690.5:ENST00000531029.5:ENST00000529233.5:ENST00000527851.5:ENST00000534667.1:ENST00000532328.5:ENST00000527968.5:ENST00000528802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr12	46256434	46256534	13314137	0	-	0.47	(0.455,0.49]	chr12	1043564	11	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr13	112547072	112547171	14159330	0	-	0.474747	(0.455,0.49]	chr13	1107575	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000611152.1:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr17	15975054	15975148	16139927	0	+	0.468085	(0.455,0.49]	chr17	1300485	5	CDS	CDS:EXON_MRNA	ADORA2B	ENSG00000170425.4	ENST00000304222.3:ENST00000582124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr17	42566199	42566277	16229177	0	+	0.461538	(0.455,0.49]	chr17	1313117	4	UTR3	UTR3:EXON_MRNA	COASY	ENSG00000068120.15	ENST00000421097.6:ENST00000393818.3:ENST00000591753.1:ENST00000591583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr17	80376300	80376381	16373337	0	+	0.45679	(0.455,0.49]	chr17	1330864	1	CDS	CDS:EXON_MRNA	RNF213	ENSG00000173821.19	ENST00000508628.6:ENST00000582970.5:ENST00000558116.5:ENST00000411702.7:ENST00000559864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr18	55269895	55269963	17128961	0	-	0.485294	(0.455,0.49]	chr18	1406534	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000643689.1:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000637239.2:ENST00000637250.2:ENST00000636822.2:ENST00000635990.2:ENST00000637923.2:ENST00000637169.2:ENST00000570287.6:ENST00000564999.5:ENST00000629387.2:ENST00000568673.5:ENST00000457482.7:ENST00000543082.5:ENST00000540999.5:ENST00000537578.5:ENST00000562680.5:ENST00000568740.5:ENST00000537856.7:ENST00000544241.6:ENST00000675707.1:ENST00000561992.5:ENST00000561831.7:ENST00000674764.1:ENST00000565018.6:ENST00000566279.5:ENST00000566286.5:ENST00000567880.5:ENST00000564228.5:ENST00000398339.5:ENST00000564403.6:ENST00000570177.6:ENST00000626584.2:ENST00000630720.3:ENST00000563760.5:ENST00000628689.2:ENST00000629343.2:ENST00000570146.3:ENST00000628636.2:ENST00000627136.2:ENST00000628078.2:ENST00000562030.3:ENST00000563686.5:ENST00000566514.5:ENST00000630828.2:ENST00000562607.5:ENST00000569012.5:ENST00000630268.2:ENST00000630319.2:ENST00000568169.5:ENST00000625925.2:ENST00000566777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr18	63198843	63198943	17154463	0	-	0.46	(0.455,0.49]	chr18	1408212	371	INTRON	INTRON	BCL2	ENSG00000171791.14	ENST00000398117.1:ENST00000333681.5:ENST00000678349.1:ENST00000678134.1:ENST00000677227.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr19	14515986	14516039	17480915	0	-	0.471698	(0.455,0.49]	chr19	1464582	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1:ENST00000396969.8:ENST00000595992.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr2	33134737	33134837	1720162	0	+	0.49	(0.455,0.49]	chr2	168654	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000432635.1:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr22	19471785	19471808	18433793	0	-	0.478261	(0.455,0.49]	chr22	1570911	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr3	37050490	37050553	3411135	0	+	0.47619	(0.455,0.49]	chr3	296363	1	CDS	CDS:UTR3:EXON_MRNA	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1:ENST00000673741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr4	77720330	77720430	5480580	0	-	0.48	(0.455,0.49]	chr4	439325	71	UTR3	UTR3:EXON_MRNA	CNOT6L	ENSG00000138767.13	ENST00000504123.6:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr5	72200169	72200268	6027797	0	+	0.484848	(0.455,0.49]	chr5	472560	65	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr5	130140414	130140510	6219420	0	+	0.458333	(0.455,0.49]	chr5	483996	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	CHSY3:HSPA8P4	ENSG00000198108.4:ENSG00000248610.1	ENST00000305031.5:ENST00000507545.1:ENST00000511877.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr5	136153935	136154011	6241010	0	+	0.473684	(0.455,0.49]	chr5	485998	2	CDS	CDS:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000511116.5:ENST00000507118.5:ENST00000514777.1:ENST00000509297.6:ENST00000506223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr6	36110538	36110638	7132636	0	+	0.48	(0.455,0.49]	chr6	549275	22	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr8	39045401	39045501	9295931	0	+	0.46	(0.455,0.49]	chr8	711234	29	INTRON	INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr9	4781905	4781991	10538995	0	-	0.476744	(0.455,0.49]	chr9	799203	6	EXON_PSEUDO	EXON_PSEUDO	RP11-307I14.2	ENSG00000220105.2	ENST00000402406.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr9	35753366	35753464	10246730	0	+	0.489796	(0.455,0.49]	chr9	770910	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RGP1	ENSG00000107185.10	ENST00000378078.5:ENST00000496906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr9	136984098	136984196	10514196	0	+	0.479592	(0.455,0.49]	chr9	796846	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-229P13.28:LCNL1	ENSG00000284341.1:ENSG00000214402.7	ENST00000471521.5:ENST00000482657.1:ENST00000408973.3:ENST00000460177.1:ENST00000432827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chrX	129929508	129929608	18857486	0	+	0.46	(0.455,0.49]	chrX	1606851	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UTP14A	ENSG00000156697.13	ENST00000425117.6:ENST00000394422.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.71798	3.765365	3.81275	0.0202679	0.0138827	0.0984041	0.0760883
chr1	155256673	155256732	1307284	0	-	0.542373	(0.53,0.59]	chr1	132098	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.2596	3.765235	5.27087	0.0185443	5.9416e-5	0.0948733	0.00130151
chr15	76285636	76285687	15382150	0	-	0.490196	(0.49,0.53]	chr15	1216358	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000560816.5:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	3.43991	3.7652	4.09049	8.40266e-5	2.9452e-5	0.00158427	7.32348e-4
chr5	32601483	32601583	5925236	0	+	0.32	(0.29,0.33]	chr5	464197	5	UTR3	UTR3:EXON_MRNA	SUB1	ENSG00000113387.12	ENST00000265073.9:ENST00000511615.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	3.62683	3.7650300000000003	3.90323	6.18968e-4	9.15815e-5	0.00822794	0.00168607
chr3	128650619	128650700	4441624	0	-	0.679012	(0.59,1]	chr3	369051	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.42639	3.764925	5.10346	0.0409084	8.40506e-4	0.163285	0.00981548
chr9	35704741	35704815	10639524	0	-	0.608108	(0.59,1]	chr9	805007	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000486788.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.42639	3.764925	5.10346	0.0409084	8.40506e-4	0.163285	0.00981548
chr1	156036680	156036779	1313209	0	-	0.444444	(0.42,0.455]	chr1	133124	15	UTR3	UTR3:EXON_MRNA	UBQLN4	ENSG00000160803.8	ENST00000368309.4	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.03532	3.7648	5.49428	0.040947	1.07978e-5	0.163285	2.9314e-4
chr19	18557761	18557855	17258662	0	+	0.670213	(0.59,1]	chr19	1425492	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KXD1	ENSG00000105700.11	ENST00000539106.5:ENST00000540691.5:ENST00000600372.5:ENST00000600796.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.0542	3.764685	4.47517	0.00735659	0.00663549	0.0491503	0.0456243
chr11	9959061	9959161	12267403	0	-	0.46	(0.455,0.49]	chr11	948624	26	EXON_MRNA	EXON_MRNA:EXON_PSEUDO:INTRON	SBF2:RP11-1H15.1	ENSG00000133812.17:ENSG00000254765.1	ENST00000676324.1:ENST00000256190.13:ENST00000675281.1:ENST00000676387.1:ENST00000533770.5:ENST00000420722.2:ENST00000526353.1:ENST00000533128.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	1	24	2	2.30139	3.764665	5.22794	0.0530131	4.80556e-5	0.195536	9.91058e-4
chrX	115703277	115703371	18834855	0	+	0.468085	(0.455,0.49]	chrX	1604659	6	EXON_PSEUDO	EXON_PSEUDO	EEF1GP5	ENSG00000234785.1	ENST00000434365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	2.30139	3.764665	5.22794	0.0530131	4.80556e-5	0.195536	9.91058e-4
chr10	7799125	7799194	10915969	0	+	0.391304	(0.39,0.42]	chr10	831325	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	52	2	3.44923	3.764655	4.08008	0.00105208	1.01757e-6	0.0123035	4.04731e-5
chr9	92055404	92055494	10735874	0	-	0.411111	(0.39,0.42]	chr9	812111	1	CDS	CDS:UTR3:EXON_MRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	3.44923	3.764655	4.08008	0.00105208	1.01757e-6	0.0123035	4.04731e-5
chr14	20457508	20457596	14171288	0	+	0.443182	(0.42,0.455]	chr14	1109118	1	UTR3	UTR3:EXON_MRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000557159.5:ENST00000557054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.32629	3.764485	5.20268	0.0153564	3.59669e-5	0.0832114	8.71318e-4
chr10	97433076	97433168	11212396	0	+	0.315217	(0.29,0.33]	chr10	852981	7	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.53415	3.76434	3.99453	8.03892e-5	5.03888e-5	0.00167226	0.00103483
chr12	68700725	68700789	12939862	0	+	0.34375	(0.33,0.36]	chr12	1008395	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535333.5:ENST00000537598.5:ENST00000535718.5:ENST00000539906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.15976	3.76427	4.36878	0.00437542	0.0021194	0.0340502	0.0198008
chr3	52707586	52707686	3479520	0	+	0.36	(0.33,0.36]	chr3	305085	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SPCS1	ENSG00000114902.14	ENST00000423431.5:ENST00000233025.11:ENST00000619898.5:ENST00000474945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	3.15976	3.76427	4.36878	0.00437542	0.0021194	0.0340502	0.0198008
chrX	12822986	12823081	18584408	0	+	0.357895	(0.33,0.36]	chrX	1587262	3	UTR3	UTR3:EXON_MRNA	PRPS2	ENSG00000101911.13	ENST00000398491.6:ENST00000380668.10:ENST00000461630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.15976	3.76427	4.36878	0.00437542	0.0021194	0.0340502	0.0198008
chr15	22866747	22866847	14810914	0	+	0.35	(0.33,0.36]	chr15	1162140	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.00573	3.764195	4.52266	0.00630535	8.34989e-4	0.044701	0.0102956
chr7	100620591	100620679	8952157	0	-	0.522727	(0.49,0.53]	chr7	684150	3	UTR3	UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	3.76099	3.76401	3.76703	2.00194e-4	1.02216e-5	0.0034021	2.82175e-4
chr5	32406855	32406938	6519428	0	-	0.518072	(0.49,0.53]	chr5	505027	2	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	70	2	2.38935	3.7638499999999997	5.13835	0.00488689	1.2496e-8	0.0376157	9.37962e-7
chr1	155139961	155140061	1306422	0	-	0.65	(0.59,1]	chr1	131762	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DPM3	ENSG00000179085.8	ENST00000341298.3:ENST00000368400.5:ENST00000368399.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.66704	3.76382	3.8606	6.16458e-4	2.2997e-4	0.00822794	0.00352524
chr7	100094172	100094256	8949632	0	-	0.595238	(0.59,1]	chr7	683513	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA:INTRON	MCM7:MIR93:MIR106B	ENSG00000166508.18:ENSG00000207757.1:ENSG00000208036.1	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000385024.1:ENST00000491245.6:ENST00000493352.1:ENST00000385301.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	7	192	2	3.43476	3.76381	4.09286	4.23802e-6	4.0364e-6	1.48276e-4	1.29819e-4
chr22	32493104	32493192	18354400	0	+	0.488636	(0.455,0.49]	chr22	1560427	1	CDS	CDS:UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.93103	3.7635099999999997	4.59599	1.15066e-4	9.38471e-7	0.00219531	3.79261e-5
chr15	58611807	58611899	15310825	0	-	0.445652	(0.42,0.455]	chr15	1208291	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1:ENST00000481164.1:ENST00000475898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	3.37962	3.763335	4.14705	1.2947e-4	2.1071e-5	0.00242147	5.06044e-4
chr1	234605256	234605355	1558256	0	-	0.383838	(0.36,0.39]	chr1	155933	11	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.49441	3.763305	4.0322	0.00588589	7.81559e-4	0.0427941	0.00927662
chr3	36767399	36767494	4116599	0	-	0.368421	(0.36,0.39]	chr3	344104	4	EXON_PSEUDO	EXON_PSEUDO	HSPD1P6	ENSG00000230067.3	ENST00000388967.3	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	1	21	2	3.49441	3.763305	4.0322	0.00588589	7.81559e-4	0.0427941	0.00927662
chr5	144162308	144162399	6881778	0	-	0.373626	(0.36,0.39]	chr5	527215	2	CDS	CDS:EXON_MRNA	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5:ENST00000519064.5:ENST00000522203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.49441	3.763305	4.0322	0.00588589	7.81559e-4	0.0427941	0.00927662
chr11	65352047	65352144	11984142	0	+	0.546392	(0.53,0.59]	chr11	920300	4	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	2.7542	3.76321	4.77222	6.67251e-4	3.14256e-4	0.00867533	0.00452711
chr2	27243603	27243688	1691800	0	+	0.576471	(0.53,0.59]	chr2	165815	2	UTR3	UTR3:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	3.49159	3.7630600000000003	4.03453	6.29049e-5	4.6e-5	0.00135218	9.56296e-4
chr21	42908921	42909021	18133919	0	+	0.53	(0.49,0.53]	chr21	1538017	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	61	2	3.3222	3.7629799999999998	4.20376	2.96558e-5	1.43152e-5	6.71364e-4	4.04062e-4
chr3	152447696	152447773	3818348	0	+	0.441558	(0.42,0.455]	chr3	325678	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	84	2	3.54898	3.7629599999999996	3.97694	2.22686e-6	1.34101e-6	8.65681e-5	5.13503e-5
chr7	107758799	107758892	8457135	0	+	0.537634	(0.53,0.59]	chr7	646250	8	CDS	CDS:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.1234	3.7629550000000003	4.40251	0.00390623	4.48447e-6	0.0322851	1.41623e-4
chr2	3577709	3577774	1616657	0	+	0.446154	(0.42,0.455]	chr2	160400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	121	2	3.53397	3.76272	3.99147	4.48034e-7	2.68202e-8	2.0164e-5	1.98021e-6
chr21	42848829	42848928	18270844	0	-	0.656566	(0.59,1]	chr21	1549336	52	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.88006	3.762605	5.64515	0.0554008	1.07144e-4	0.191173	0.00206452
chr1	149886640	149886652	1287110	0	-	0.5	(0.49,0.53]	chr1	127855	1	UTR5	UTR5:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.84493	3.7623249999999997	4.67972	6.94757e-4	5.26587e-4	0.00876781	0.00679103
chr1	64833799	64833894	1073005	0	-	0.378947	(0.36,0.39]	chr1	109587	7	UTR3	UTR3:EXON_MRNA	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000672574.1:ENST00000673246.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	3.69835	3.7622400000000003	3.82613	3.2708e-4	1.39565e-4	0.00502339	0.0023599
chr12	49128938	49128980	13323978	0	-	0.309524	(0.29,0.33]	chr12	1045747	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBA1B	ENSG00000123416.15	ENST00000336023.9:ENST00000332858.10:ENST00000547765.5:ENST00000550367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.96089	3.762125	4.56336	8.8231e-4	5.56633e-4	0.0101404	0.0076748
chr15	83016518	83016615	15416723	0	-	0.360825	(0.36,0.39]	chr15	1219171	2	UTR3	UTR3:EXON_MRNA	BTBD1	ENSG00000064726.10	ENST00000261721.9	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.0992	3.7621149999999997	4.42503	0.00133228	5.86576e-4	0.0144372	0.00742331
chr2	171553422	171553500	2207383	0	+	0.371795	(0.36,0.39]	chr2	201993	2	CDS	CDS:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000321348.9:ENST00000375252.3:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.0992	3.7621149999999997	4.42503	0.00133228	5.86576e-4	0.0144372	0.00742331
chr4	118817337	118817412	5618804	0	-	0.493333	(0.49,0.53]	chr4	447702	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5:ENST00000503683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	63	2	2.75215	3.7620500000000003	4.77195	8.79689e-4	2.57118e-7	0.0107294	1.25706e-5
chr18	32413176	32413275	17064966	0	-	0.484848	(0.455,0.49]	chr18	1402367	1	INTRON	INTRON	GAREM1	ENSG00000141441.16	ENST00000269209.7:ENST00000399218.8	protein_coding	protein_coding	protein_coding	protein_coding	24	327	2	3.35891	3.761745	4.16458	1.77431e-8	4.69369e-12	1.38487e-6	8.89486e-10
chr3	113805353	113805439	3676076	0	+	0.44186	(0.42,0.455]	chr3	314503	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5:ENST00000461496.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.46349	3.761515	4.05954	0.00617886	9.0025e-4	0.0439741	0.0102618
chr1	1785873	1785971	829669	0	-	0.428571	(0.42,0.455]	chr1	82929	7	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	2.87416	3.761465	4.64877	3.04637e-5	5.54135e-7	6.83179e-4	2.69297e-5
chr17	76561373	76561460	16359160	0	+	0.436782	(0.42,0.455]	chr17	1328574	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000591956.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	2.50714	3.76138	5.01562	0.00122903	1.01971e-4	0.0130835	0.0019861
chr2	32220532	32220613	1711932	0	+	0.432099	(0.42,0.455]	chr2	167925	5	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.99666	3.7613000000000003	4.52594	0.00144145	0.00104775	0.0147046	0.0123035
chr12	132825700	132825796	13163184	0	+	0.520833	(0.49,0.53]	chr12	1029271	1	EXON_PSEUDO	EXON_PSEUDO	RPS11P5	ENSG00000232888.4	ENST00000488441.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	170	2	2.98555	3.761025	4.5365	3.00784e-5	3.41993e-11	7.44291e-4	5.21939e-9
chr17	59666886	59666977	16295297	0	+	0.351648	(0.33,0.36]	chr17	1321674	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	3.00882	3.760755	4.51269	1.16165e-5	1.90304e-6	3.10678e-4	7.59317e-5
chr1	9749460	9749553	854818	0	-	0.580645	(0.53,0.59]	chr1	86304	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000464286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	3.21941	3.76068	4.30195	0.00421989	0.00266171	0.0328662	0.0240332
chr1	153983523	153983581	1300588	0	-	0.568965	(0.53,0.59]	chr1	130817	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RP11-422P24.14:RAB13	ENSG00000285641.1:ENSG00000143545.10	ENST00000648869.1:ENST00000614713.4:ENST00000368575.5:ENST00000462680.5:ENST00000495720.5:ENST00000484297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	2.65894	3.76063	4.86232	0.0193255	4.57805e-4	0.0943643	0.00608573
chr19	38817450	38817512	17560861	0	-	0.532258	(0.53,0.59]	chr19	1475039	1	CDS	CDS:UTR3:EXON_MRNA	ECH1:AC104534.3	ENSG00000104823.9:ENSG00000268083.5	ENST00000221418.9:ENST00000601778.5:ENST00000598707.5:ENST00000594164.5:ENST00000600178.5:ENST00000601060.5:ENST00000598316.5:ENST00000595470.1:ENST00000594769.5:ENST00000602021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.65894	3.76063	4.86232	0.0193255	4.57805e-4	0.0943643	0.00608573
chr1	40240731	40240826	152799	0	+	0.421053	(0.42,0.455]	chr1	19093	4	UTR3	UTR3:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr1	61146626	61146726	228660	0	+	0.45	(0.42,0.455]	chr1	27213	137	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr10	101624044	101624144	11664618	0	-	0.44	(0.42,0.455]	chr10	889226	110	INTRON	INTRON	FBXW4	ENSG00000107829.15	ENST00000470093.5:ENST00000331272.9:ENST00000664783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr15	65605128	65605221	15346894	0	-	0.44086	(0.42,0.455]	chr15	1212030	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	INTS14	ENSG00000138614.15	ENST00000573314.5:ENST00000652388.1:ENST00000313182.6:ENST00000567744.5:ENST00000431261.6:ENST00000569491.5:ENST00000420799.7:ENST00000442903.3:ENST00000569004.5:ENST00000564306.5:ENST00000561769.1:ENST00000567923.2:ENST00000568573.1:ENST00000567940.1:ENST00000562830.1:ENST00000569565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr17	76733094	76733194	16359308	0	+	0.45	(0.42,0.455]	chr17	1328600	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	METTL23:RP11-318A15.7	ENSG00000181038.14:ENSG00000267168.1	ENST00000615984.4:ENST00000589977.5:ENST00000341249.11:ENST00000591571.5:ENST00000592849.5:ENST00000588783.5:ENST00000586738.5:ENST00000588563.5:ENST00000588302.5:ENST00000586752.5:ENST00000590964.5:ENST00000588822.1:ENST00000586200.1:ENST00000589581.1:ENST00000588964.1:ENST00000587459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr19	40365552	40365646	17328597	0	+	0.43617	(0.42,0.455]	chr19	1435537	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000600479.5:ENST00000392032.6:ENST00000598962.5:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000594085.5:ENST00000409735.9:ENST00000356508.9:ENST00000600948.5:ENST00000594908.5:ENST00000596682.5:ENST00000409281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr2	128109691	128109746	2059662	0	+	0.454545	(0.42,0.455]	chr2	193182	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr2	208271519	208271619	2344883	0	+	0.45	(0.42,0.455]	chr2	211801	1	CDS_START	CDS_START:CDS:EXON_MRNA	PIKFYVE	ENSG00000115020.17	ENST00000264380.9:ENST00000443896.5:ENST00000392202.7:ENST00000407449.5:ENST00000308862.10:ENST00000422495.5:ENST00000452564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr3	14116425	14116524	4048099	0	-	0.454545	(0.42,0.455]	chr3	339795	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHCHD4	ENSG00000163528.13	ENST00000295767.9:ENST00000396914.4:ENST00000420103.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr5	177993447	177993547	6993970	0	-	0.44	(0.42,0.455]	chr5	535433	4	SS3_PROX	SS3_PROX:INTRON	PROP1	ENSG00000175325.2	ENST00000308304.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr8	100185137	100185188	9519103	0	+	0.431373	(0.42,0.455]	chr8	723569	1	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	SPAG1:Y_RNA	ENSG00000104450.13:ENSG00000199667.1	ENST00000520643.5:ENST00000251809.4:ENST00000520508.5:ENST00000388798.7:ENST00000362797.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr9	33922052	33922142	10633422	0	-	0.433333	(0.42,0.455]	chr9	803789	5	UTR3	UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.46169	3.760615	4.05954	0.03884	0.00617886	0.149227	0.0439741
chr5	75344244	75344332	6036980	0	+	0.352273	(0.33,0.36]	chr5	473597	1	CDS	CDS:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	95	2	3.60818	3.76032	3.91246	6.01069e-6	1.3094e-8	1.97805e-4	9.78636e-7
chr19	11436022	11436117	17231120	0	+	0.610526	(0.59,1]	chr19	1419874	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000591946.5:ENST00000589126.5:ENST00000588269.1:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000593101.5:ENST00000587327.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	150	2	3.67775	3.7602450000000003	3.84274	1.85745e-5	7.2677e-6	5.04916e-4	2.13055e-4
chr5	32125911	32126011	6517511	0	-	0.44	(0.42,0.455]	chr5	504807	13	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	12	166	2	3.44127	3.7601899999999997	4.07911	3.35198e-7	9.8218e-10	1.7658e-5	1.03181e-7
chr16	164549	164617	15480683	0	+	0.691176	(0.59,1]	chr16	1224162	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3:ENST00000496585.1	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	40	1026	2	3.47119	3.76009	4.04899	1.57596e-8	2.48189e-9	1.14786e-6	2.52508e-7
chr10	92050338	92050436	11621976	0	-	0.387755	(0.36,0.39]	chr10	884690	38	UTR3	UTR3:EXON_MRNA	CPEB3	ENSG00000107864.15	ENST00000265997.5:ENST00000412050.8:ENST00000614585.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.78659	3.7600249999999997	4.73346	0.0132982	3.2963e-4	0.0740932	0.00504024
chr2	231808672	231808769	2426602	0	+	0.360825	(0.36,0.39]	chr2	218752	2	UTR3	UTR3:EXON_MRNA	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000461350.5:ENST00000488111.1:ENST00000449174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.78659	3.7600249999999997	4.73346	0.0132982	3.2963e-4	0.0740932	0.00504024
chr4	25929386	25929483	4763596	0	+	0.381443	(0.36,0.39]	chr4	394101	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMIM20	ENSG00000250317.8	ENST00000515764.2:ENST00000614775.4:ENST00000506197.2:ENST00000514384.1:ENST00000522137.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	44	2	3.00115	3.75995	4.51875	0.0012486	1.56348e-6	0.0137762	5.82084e-5
chr1	32333432	32333529	128533	0	+	0.474227	(0.455,0.49]	chr1	15954	5	UTR3	UTR3:EXON_MRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.35716	3.7596549999999995	5.16215	0.00260884	5.04348e-5	0.0230635	0.00113788
chr9	35060454	35060525	10638101	0	-	0.478873	(0.455,0.49]	chr9	804511	3	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	3.24013	3.759595	4.27906	5.30989e-5	8.82347e-6	0.00118379	2.48294e-4
chr1	203739854	203739952	669881	0	+	0.387755	(0.36,0.39]	chr1	67517	1	UTR3	UTR3:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.93136	3.7594149999999997	4.58747	0.00811967	6.55819e-4	0.0528637	0.00860229
chr3	155842431	155842525	4538258	0	-	0.37234	(0.36,0.39]	chr3	376011	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.93136	3.7594149999999997	4.58747	0.00811967	6.55819e-4	0.0528637	0.00860229
chr2	32305526	32305626	1712254	0	+	0.3	(0.29,0.33]	chr2	167961	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000437765.1:ENST00000441084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.67277	3.75924	4.84571	0.0255386	1.10978e-7	0.117089	6.11678e-6
chr1	156036581	156036680	1313208	0	-	0.444444	(0.42,0.455]	chr1	133124	14	UTR3	UTR3:EXON_MRNA	UBQLN4	ENSG00000160803.8	ENST00000368309.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.27707	3.7592	4.24133	0.00326918	0.00207325	0.0282494	0.0194849
chr6	43562246	43562346	7708495	0	-	0.51	(0.49,0.53]	chr6	591584	1	CDS	CDS:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	3.51981	3.7590700000000004	3.99833	6.88328e-4	1.95792e-6	0.00876781	7.01677e-5
chr5	160428601	160428681	6338728	0	+	0.425	(0.42,0.455]	chr5	493690	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	3.17464	3.758985	4.34333	7.70757e-6	5.37112e-6	2.21228e-4	1.79904e-4
chr13	113640916	113641009	13909852	0	+	0.419355	(0.39,0.42]	chr13	1090561	8	UTR3	UTR3:EXON_MRNA	TFDP1	ENSG00000198176.13	ENST00000375370.10	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.65028	3.75898	5.86768	0.0292034	3.14934e-7	0.128158	1.67595e-5
chr17	40400342	40400409	16538866	0	-	0.432836	(0.42,0.455]	chr17	1354607	3	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	3.11513	3.7589449999999998	4.40276	0.0017618	1.19503e-5	0.0180053	3.1819e-4
chr3	131462636	131462722	4450170	0	-	0.44186	(0.42,0.455]	chr3	370090	6	UTR3	UTR3:EXON_MRNA	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000510043.1:ENST00000425847.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	1.96087	3.7589449999999998	5.55702	0.00983972	7.30994e-6	0.0615953	2.13219e-4
chr1	155731943	155732033	484524	0	+	0.577778	(0.53,0.59]	chr1	50993	1	CDS	CDS:EXON_MRNA:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000497826.5:ENST00000479151.5:ENST00000462978.1:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	70	2	3.42051	3.758635	4.09676	3.14727e-5	1.59847e-5	7.72298e-4	4.06411e-4
chr3	9973623	9973709	4031278	0	-	0.465116	(0.455,0.49]	chr3	338394	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1:ENST00000429759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	2.8427	3.75849	4.67428	1.88409e-4	4.63488e-7	0.00301567	2.31256e-5
chr3	48468982	48469022	4167349	0	-	0.6	(0.59,1]	chr3	348996	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.17889	3.758445	5.338	0.025085	3.196e-4	0.116848	0.00457916
chr3	48469785	48469843	4167361	0	-	0.568965	(0.53,0.59]	chr3	349004	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1:ENST00000486344.5:ENST00000424965.5:ENST00000417841.5:ENST00000415268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.64837	3.7582999999999998	4.86823	0.0199467	4.35895e-4	0.0984041	0.00623608
chr1	154550339	154550437	1303388	0	-	0.561224	(0.53,0.59]	chr1	131291	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBE2Q1	ENSG00000160714.10	ENST00000292211.5:ENST00000467683.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.20874	3.7582500000000003	4.30776	0.00407289	0.00278422	0.0324137	0.0241009
chr19	48968418	48968515	17604710	0	-	0.587629	(0.53,0.59]	chr19	1483492	4	UTR3	UTR3:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.20874	3.7582500000000003	4.30776	0.00407289	0.00278422	0.0324137	0.0241009
chr9	130104484	130104550	10488176	0	+	0.530303	(0.53,0.59]	chr9	791957	2	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.20874	3.7582500000000003	4.30776	0.00407289	0.00278422	0.0324137	0.0241009
chr9	137241965	137242021	10515393	0	+	0.660714	(0.59,1]	chr9	797247	2	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	3.44238	3.758135	4.07389	0.00158239	7.9402e-5	0.0167793	0.00150391
chr14	102036560	102036660	14495746	0	+	0.53	(0.49,0.53]	chr14	1133206	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1:ENST00000647204.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	3.68246	3.757825	3.83319	3.06313e-4	1.34601e-4	0.00442973	0.00249552
chr9	137242687	137242783	10515401	0	+	0.552083	(0.53,0.59]	chr9	797249	3	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	107	2	3.56227	3.7577749999999996	3.95328	5.9444e-6	3.12214e-7	1.96056e-4	1.47997e-5
chr1	12572727	12572790	862135	0	-	0.555556	(0.53,0.59]	chr1	87509	1	CDS	CDS:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	3.47419	3.75774	4.04129	8.75273e-4	1.5886e-6	0.0106963	5.89925e-5
chr1	219973317	219973398	1510712	0	-	0.481481	(0.455,0.49]	chr1	150970	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	3.49489	3.757645	4.0204	0.00736097	2.03098e-6	0.0490627	7.24882e-5
chr15	60360946	60361000	15316841	0	-	0.481481	(0.455,0.49]	chr15	1208958	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.74211	3.757645	4.77318	0.00330545	4.7888e-4	0.028478	0.00628636
chr1	151401829	151401883	471594	0	+	0.351852	(0.33,0.36]	chr1	48199	1	UTR3	UTR3:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000290541.7:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1:ENST00000466425.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	3.46908	3.757625	4.04617	0.00114872	1.29334e-6	0.0130528	4.97655e-5
chr4	13368464	13368557	5315125	0	-	0.483871	(0.455,0.49]	chr4	427964	9	UTR3	UTR3:EXON_MRNA:INTRON	RAB28	ENSG00000157869.16	ENST00000511649.5:ENST00000330852.10:ENST00000288723.9:ENST00000508274.5:ENST00000338176.8:ENST00000630951.1:ENST00000504644.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.24913	3.75753	4.26593	0.00372962	0.00239443	0.0302984	0.0225356
chr22	41905950	41906047	18383951	0	+	0.494845	(0.49,0.53]	chr22	1565112	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	204	2	3.07413	3.7574499999999995	4.44077	1.33661e-7	3.2371e-9	7.18989e-6	3.18335e-7
chr1	42926857	42926911	966976	0	-	0.425926	(0.42,0.455]	chr1	101866	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.4231	3.757325	4.09155	0.00112541	2.98142e-5	0.0128481	6.7355e-4
chr5	144160396	144160496	6881758	0	-	0.38	(0.36,0.39]	chr5	527208	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5:ENST00000519064.5	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	3.70878	3.75732	3.80586	9.62552e-6	1.80605e-6	2.93977e-4	6.57586e-5
chr15	82540056	82540132	15412568	0	-	0.605263	(0.59,1]	chr15	1218669	2	CDS	CDS:UTR3:EXON_MRNA	RPS17:RP11-152F13.10	ENSG00000182774.13:ENSG00000260836.2	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1:ENST00000559776.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	32	916	2	3.37773	3.7571200000000005	4.13651	2.005e-7	2.37681e-10	1.13771e-5	2.94156e-8
chr1	112669991	112670032	411471	0	+	0.341463	(0.33,0.36]	chr1	40538	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.78785	3.7569150000000002	4.72598	0.00115378	3.063e-7	0.0130851	1.45748e-5
chr2	98618188	98618246	1951702	0	+	0.482759	(0.455,0.49]	chr2	185369	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UNC50	ENSG00000115446.12	ENST00000409975.5:ENST00000357765.7:ENST00000409347.5:ENST00000393493.6:ENST00000423713.1:ENST00000466492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.85172	3.7569099999999995	4.6621	0.010864	7.84472e-4	0.0643837	0.00927662
chr6	28903195	28903292	7652684	0	-	0.484536	(0.455,0.49]	chr6	583182	3	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.85172	3.7569099999999995	4.6621	0.010864	7.84472e-4	0.0643837	0.00927662
chrX	130145478	130145569	19221650	0	-	0.483516	(0.455,0.49]	chrX	1633392	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AIFM1	ENSG00000156709.15	ENST00000675050.1:ENST00000676229.1:ENST00000674957.1:ENST00000674546.1:ENST00000287295.8:ENST00000675092.1:ENST00000675427.1:ENST00000675857.1:ENST00000346424.6:ENST00000535724.6:ENST00000527892.5:ENST00000416073.7:ENST00000676328.1:ENST00000676436.1:ENST00000674997.1:ENST00000319908.8:ENST00000676048.1:ENST00000675240.1:ENST00000675111.1:ENST00000674555.1:ENST00000675037.1:ENST00000674722.1:ENST00000533719.2:ENST00000676144.1:ENST00000675774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.85172	3.7569099999999995	4.6621	0.010864	7.84472e-4	0.0643837	0.00927662
chr9	131233541	131233641	10496735	0	+	0.49	(0.455,0.49]	chr9	793398	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000476004.5:ENST00000528406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	3.44026	3.75664	4.07302	8.71641e-5	9.40261e-8	0.00177086	5.29866e-6
chr10	28608185	28608257	10990506	0	+	0.472222	(0.455,0.49]	chr10	835880	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	168	2	3.46906	3.75658	4.0441	5.21618e-8	4.3792e-9	3.51571e-6	3.79596e-7
chr3	186575839	186575937	3957039	0	+	0.397959	(0.39,0.42]	chr3	333555	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	3.57244	3.7561999999999998	3.93996	0.00841622	3.12704e-7	0.054565	1.48129e-5
chr11	32583887	32583929	11898111	0	+	0.52381	(0.49,0.53]	chr11	908878	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	3.25514	3.75618	4.25722	0.00227467	1.00699e-5	0.0209546	3.03291e-4
chr1	114730507	114730577	1239732	0	-	0.442857	(0.42,0.455]	chr1	121390	1	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.16223	3.75605	4.34987	4.45084e-4	5.55486e-6	0.00633715	1.68903e-4
chr16	20781051	20781130	15582846	0	+	0.455696	(0.455,0.49]	chr16	1234766	2	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1	protein_coding	protein_coding	protein_coding	protein_coding	12	147	2	3.33562	3.756005	4.17639	1.10922e-7	3.41835e-8	6.11646e-6	2.46038e-6
chr1	67258660	67258752	264122	0	+	0.347826	(0.33,0.36]	chr1	29505	3	CDS	CDS:UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	67	2	3.13916	3.7558350000000003	4.37251	4.50423e-5	8.83161e-8	0.0010411	5.02887e-6
chr16	89304507	89304606	16077351	0	-	0.494949	(0.49,0.53]	chr16	1292159	25	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.99849	3.7558049999999996	4.51312	0.00630123	0.00156636	0.0445415	0.0156889
chr19	54105977	54106011	17389890	0	+	0.529412	(0.49,0.53]	chr19	1446992	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000471292.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6:ENST00000420296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.99849	3.7558049999999996	4.51312	0.00630123	0.00156636	0.0445415	0.0156889
chr1	205620291	205620382	1461627	0	-	0.505495	(0.49,0.53]	chr1	147411	5	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	3.33324	3.75579	4.17834	0.00162947	1.74561e-5	0.0169972	4.38078e-4
chr3	160420739	160420820	3852978	0	+	0.432099	(0.42,0.455]	chr3	327444	1	CDS	CDS:UTR3:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000469858.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000497203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.10874	3.75575	4.40276	0.0017618	5.40397e-4	0.0180053	0.00688813
chr17	78161154	78161254	16367625	0	+	0.61	(0.59,1]	chr17	1329535	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C17orf99	ENSG00000187997.11	ENST00000340363.9:ENST00000591995.1:ENST00000451352.3:ENST00000586029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	3.34171	3.755735	4.16976	0.00234977	4.80088e-5	0.0222173	9.91058e-4
chr11	58618001	58618100	11955353	0	+	0.40404	(0.39,0.42]	chr11	914993	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	3.3111	3.7556950000000002	4.20029	2.11919e-4	1.46608e-5	0.00357806	3.77398e-4
chr17	59681386	59681478	16295453	0	+	0.402174	(0.39,0.42]	chr17	1321719	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	9	126	2	3.6576	3.75562	3.85364	2.40332e-5	3.13791e-9	6.22273e-4	2.84206e-7
chr8	17274732	17274775	9211866	0	+	0.44186	(0.42,0.455]	chr8	703725	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VPS37A	ENSG00000155975.10	ENST00000520140.5:ENST00000324849.9:ENST00000425020.6:ENST00000521829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	3.31073	3.75561	4.20049	1.94134e-4	1.49765e-5	0.00332542	3.83096e-4
chr11	10508612	10508708	12270803	0	-	0.375	(0.36,0.39]	chr11	948737	4	UTR5	UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	26	323	2	3.06551	3.7554550000000004	4.4454	1.52252e-7	1e-12	9.04217e-6	2.25522e-10
chr16	30723877	30723976	15631064	0	+	0.59596	(0.59,1]	chr16	1240525	4	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	1.63662	3.7554	5.87418	0.0410169	2.5071e-5	0.163285	5.82734e-4
chr15	90467520	90467592	15100432	0	+	0.472222	(0.455,0.49]	chr15	1188115	2	CDS	CDS:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.49033	3.7553650000000003	4.0204	0.00736097	7.92678e-4	0.0490627	0.00933379
chr17	64749921	64750008	16641052	0	-	0.482759	(0.455,0.49]	chr17	1368652	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ARHGAP27P1-BPTFP1-KPNA2P3:KPNA2P3	ENSG00000215769.8:ENSG00000266820.1	ENST00000578492.5:ENST00000584190.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	23	2	3.49033	3.7553650000000003	4.0204	0.00736097	7.92678e-4	0.0490627	0.00933379
chr20	45418851	45418915	17801636	0	+	0.484375	(0.455,0.49]	chr20	1505092	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000638953.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639194.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	3.49033	3.7553650000000003	4.0204	0.00736097	7.92678e-4	0.0490627	0.00933379
chr22	19968585	19968636	18296523	0	+	0.666667	(0.59,1]	chr22	1553020	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	166	2	3.21276	3.755095	4.29743	2.81132e-5	8.5433e-6	7.10133e-4	2.41736e-4
chr18	26078075	26078103	17046143	0	-	0.357143	(0.33,0.36]	chr18	1401219	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580003.1:ENST00000580751.5:ENST00000580642.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	3.473	3.75503	4.03706	8.77304e-4	5.18043e-5	0.0101202	0.00115752
chr1	26320170	26320202	108948	0	+	0.4375	(0.42,0.455]	chr1	12987	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD52	ENSG00000169442.9	ENST00000374213.3:ENST00000470468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.7523	3.75479	4.75728	0.0153283	5.3817e-4	0.0828908	0.00686676
chr14	34562831	34562927	14577812	0	-	0.427083	(0.42,0.455]	chr14	1142024	19	UTR3	UTR3:EXON_MRNA	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.7523	3.75479	4.75728	0.0153283	5.3817e-4	0.0828908	0.00686676
chr16	58526063	58526138	15966280	0	-	0.453333	(0.42,0.455]	chr16	1281070	2	CDS	CDS:UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.7523	3.75479	4.75728	0.0153283	5.3817e-4	0.0828908	0.00686676
chr2	73244004	73244049	1885413	0	+	0.422222	(0.42,0.455]	chr2	178549	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCT7	ENSG00000135624.16	ENST00000469844.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5:ENST00000258091.10:ENST00000398422.2:ENST00000399032.2:ENST00000409924.7:ENST00000473786.5:ENST00000488856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.7523	3.75479	4.75728	0.0153283	5.3817e-4	0.0828908	0.00686676
chr9	83969380	83969406	10712869	0	-	0.192308	[0,0.29]	chr9	810479	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	HNRNPK:MIR7-1	ENSG00000165119.21:ENSG00000284179.1	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1:ENST00000384871.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	5	51	2	3.31891	3.754785	4.19066	8.16829e-5	4.16596e-7	0.00169478	1.89224e-5
chr10	80512206	80512269	11151963	0	+	0.666667	(0.59,1]	chr10	847910	2	CDS	CDS:EXON_MRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.61074	3.754655	4.89857	0.025486	0.00182139	0.117089	0.0176016
chr12	7157574	7157660	12717466	0	+	0.697674	(0.59,1]	chr12	987740	2	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535313.2:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.06258	3.754645	4.44671	0.00931497	0.00616167	0.0586162	0.0438642
chr17	41523919	41523997	16542251	0	-	0.602564	(0.59,1]	chr17	1355969	2	CDS	CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000468880.1:ENST00000593096.1:ENST00000471565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.06258	3.754645	4.44671	0.00931497	0.00616167	0.0586162	0.0438642
chr1	30936642	30936738	916322	0	-	0.510417	(0.49,0.53]	chr1	95965	1	CDS	CDS:UTR3:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1:ENST00000529846.5:ENST00000525997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	3.38647	3.75455	4.12263	0.00591451	1.15525e-4	0.0427941	0.00204405
chr16	30224412	30224511	15913244	0	-	0.575758	(0.53,0.59]	chr16	1275086	14	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.69065	3.7545200000000003	3.81839	0.0184435	3.04331e-4	0.0945306	0.00472028
chr8	47879574	47879658	9816586	0	-	0.547619	(0.53,0.59]	chr8	742723	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.47419	3.75436	4.03453	8.75273e-4	4.6e-5	0.0106963	9.56296e-4
chr11	119096607	119096705	12626611	0	-	0.510204	(0.49,0.53]	chr11	979850	7	UTR3	UTR3:EXON_MRNA	DPAGT1	ENSG00000172269.20	ENST00000682232.1:ENST00000409993.6:ENST00000392834.7:ENST00000354202.9:ENST00000481084.5:ENST00000461999.1:ENST00000530052.2:ENST00000682652.1:ENST00000683955.1:ENST00000684345.1:ENST00000683373.1:ENST00000682192.1:ENST00000683143.1:ENST00000682791.1:ENST00000682946.1:ENST00000682811.1:ENST00000683567.1:ENST00000524658.2:ENST00000683558.1:ENST00000682517.1:ENST00000684315.1:ENST00000684682.1:ENST00000682326.1:ENST00000684499.1:ENST00000684252.1:ENST00000682691.1:ENST00000684142.1:ENST00000684255.1:ENST00000445653.6:ENST00000682191.1:ENST00000414373.5:ENST00000682665.1:ENST00000639704.1:ENST00000636404.1:ENST00000638850.1:ENST00000640747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	3.68499	3.7541450000000003	3.8233	2.9991e-4	1.44192e-4	0.00472028	0.00242438
chr3	184305848	184305930	3949063	0	+	0.512195	(0.49,0.53]	chr3	332330	2	CDS	CDS:EXON_MRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000488085.1:ENST00000432855.1:ENST00000496925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.68499	3.7541450000000003	3.8233	2.9991e-4	1.44192e-4	0.00472028	0.00242438
chr7	158767713	158767774	9159660	0	-	0.327869	(0.29,0.33]	chr7	699771	2	CDS	CDS:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.26422	3.754045	4.24387	0.00263476	2.56761e-4	0.0239118	0.00385453
chr19	3467828	3467927	17202202	0	+	0.494949	(0.49,0.53]	chr19	1413755	52	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.38935	3.754015	5.11868	0.00488689	9.66505e-5	0.0376157	0.00175267
chr1	112913890	112913990	1232315	0	-	0.51	(0.49,0.53]	chr1	120456	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	12	161	2	3.47898	3.753975	4.02897	1.34282e-7	3.15953e-8	8.07144e-6	2.08636e-6
chr13	29511300	29511399	13945186	0	-	0.393939	(0.39,0.42]	chr13	1094548	20	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.86895	3.7538899999999997	4.63883	0.00177945	5.68159e-4	0.0172974	0.0077844
chr2	171976156	171976232	2208650	0	+	0.407895	(0.39,0.42]	chr2	202156	1	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	3.4261	3.753835	4.08157	0.00107164	1.0443e-6	0.0118238	4.57959e-5
chr10	128096950	128097047	11744989	0	-	0.587629	(0.53,0.59]	chr10	896070	4	UTR3	UTR3:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.47	3.753525	5.03705	0.0089333	0.00020199200000000001	0.0567495	0.00317801
chr17	49053681	49053779	16256683	0	+	0.571429	(0.53,0.59]	chr17	1317683	44	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.47	3.753525	5.03705	0.0089333	0.00020199200000000001	0.0567495	0.00317801
chr19	9828591	9828675	17223491	0	+	0.5	(0.49,0.53]	chr19	1418091	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBL5	ENSG00000198258.11	ENST00000358666.7:ENST00000590068.1:ENST00000589960.5:ENST00000593087.1:ENST00000586895.6:ENST00000588141.1:ENST00000588595.5:ENST00000589372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.51671	3.753525	4.99034	0.00768763	1.6002e-4	0.050396	0.00286408
chr11	64197853	64197913	11979252	0	+	0.416667	(0.39,0.42]	chr11	918715	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000544739.5:ENST00000537479.5:ENST00000538497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.34349	3.75348	5.16347	0.0169272	6.48089e-5	0.0890655	0.00126536
chr9	17412728	17412826	10201432	0	+	0.367347	(0.36,0.39]	chr9	767317	29	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8	protein_coding	protein_coding	protein_coding	protein_coding	8	149	2	2.47194	3.753425	5.03491	0.00204665	1e-12	0.0200766	2.25522e-10
chr12	113390660	113390757	13101761	0	+	0.412371	(0.39,0.42]	chr12	1022448	22	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	12	138	2	3.49239	3.7534099999999997	4.01443	4.06966e-8	2.42399e-8	2.86113e-6	1.66474e-6
chr12	7150927	7150995	12717395	0	+	0.617647	(0.59,1]	chr12	987729	1	CDS	CDS:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000542663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.71222	3.75336	4.7945	0.00398753	0.0031766	0.031888	0.0279054
chr11	111821510	111821609	12602881	0	-	0.424242	(0.42,0.455]	chr11	977082	36	INTRON	INTRON	ALG9:RP11-108O10.8:ALG9-IT1	ENSG00000086848.15:ENSG00000258529.5:ENSG00000254450.1	ENST00000616540.5:ENST00000532425.6:ENST00000614444.4:ENST00000526272.5:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000531305.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	96	2	3.14957	3.7533399999999997	4.35711	9.82296e-5	7.68305e-9	0.00193927	6.19048e-7
chr11	43838316	43838398	11924304	0	+	0.487805	(0.455,0.49]	chr11	911191	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-472I20.4:HSD17B12	ENSG00000283341.2:ENSG00000149084.13	ENST00000532864.6:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000637401.1:ENST00000638034.1:ENST00000527213.5:ENST00000533090.6:ENST00000533802.5:ENST00000534053.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	29	2	2.12994	3.7530149999999995	5.37609	0.0304832	2.05373e-5	0.130204	4.97369e-4
chr1	31364678	31364770	123987	0	+	0.478261	(0.455,0.49]	chr1	15086	6	UTR3	UTR3:EXON_MRNA	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000373714.5:ENST00000344147.10	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.30384	3.752865	4.20189	0.00397662	0.00184955	0.0322851	0.0178046
chr11	34468341	34468395	11906310	0	+	0.481481	(0.455,0.49]	chr11	909826	2	CDS	CDS:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000525707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.30384	3.752865	4.20189	0.00397662	0.00184955	0.0322851	0.0178046
chr19	49154367	49154463	17605448	0	-	0.479167	(0.455,0.49]	chr19	1483739	11	CDS	CDS:EXON_MRNA	HRC	ENSG00000130528.12	ENST00000252825.9:ENST00000595625.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.30384	3.752865	4.20189	0.00397662	0.00184955	0.0322851	0.0178046
chr2	135848052	135848120	2897984	0	-	0.470588	(0.455,0.49]	chr2	258500	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.30384	3.752865	4.20189	0.00397662	0.00184955	0.0322851	0.0178046
chr12	57822607	57822707	13358225	0	-	0.53	(0.49,0.53]	chr12	1053218	28	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.56183	3.7527299999999997	4.94363	0.0261296	2.3417e-4	0.118976	0.00355764
chr16	634584	634644	15817372	0	-	0.5	(0.49,0.53]	chr16	1260279	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	METTL26	ENSG00000130731.16	ENST00000614890.4:ENST00000338401.8:ENST00000301686.13:ENST00000397666.6:ENST00000448973.6:ENST00000397664.8:ENST00000568077.5:ENST00000456420.6:ENST00000397665.6:ENST00000564039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.56183	3.7527299999999997	4.94363	0.0261296	2.3417e-4	0.118976	0.00355764
chr19	39981205	39981305	17327736	0	+	0.47	(0.455,0.49]	chr19	1435401	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSMC4	ENSG00000013275.8	ENST00000157812.7:ENST00000455878.2:ENST00000593455.5:ENST00000601697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.12843	3.75268	4.37693	0.00392855	4.5365e-6	0.0322851	1.42727e-4
chr1	153668452	153668551	1298476	0	-	0.545455	(0.53,0.59]	chr1	130419	1	CDS_START	CDS_START:CDS:EXON_MRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000368684.8:ENST00000368681.1	protein_coding	protein_coding	protein_coding	protein_coding	7	114	2	2.90539	3.752605	4.59982	5.33807e-5	1.85529e-8	0.00118956	1.32775e-6
chr12	74540186	74540285	12961061	0	+	0.40404	(0.39,0.42]	chr12	1010219	19	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.30055	3.7524499999999996	5.20435	0.0070645	2.91423e-5	0.0477419	7.26551e-4
chr18	54745488	54745581	16892675	0	+	0.569892	(0.53,0.59]	chr18	1390676	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	RAB27B:RPSAP57	ENSG00000041353.10:ENSG00000267524.1	ENST00000586570.5:ENST00000590033.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	28	2	3.67993	3.752	3.82407	0.0179666	3.22778e-4	0.0918323	0.0046122
chr19	16555315	16555397	17491612	0	-	0.573171	(0.53,0.59]	chr19	1466506	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1:ENST00000421082.1:ENST00000469055.1:ENST00000470077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.67993	3.752	3.82407	0.0179666	3.22778e-4	0.0918323	0.0046122
chr2	219223584	219223674	3191321	0	-	0.544444	(0.53,0.59]	chr2	280877	1	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000429920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	3.67993	3.752	3.82407	0.0179666	3.22778e-4	0.0918323	0.0046122
chr15	89201265	89201364	15093501	0	+	0.454545	(0.42,0.455]	chr15	1187100	60	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.54838	3.75188	3.95538	5.9986e-4	6.68846e-5	0.0075062	0.00142352
chr17	42501196	42501250	16228604	0	+	0.444444	(0.42,0.455]	chr17	1312964	1	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.54838	3.75188	3.95538	5.9986e-4	6.68846e-5	0.0075062	0.00142352
chr2	7038336	7038435	1621920	0	+	0.494949	(0.49,0.53]	chr2	160847	78	INTRON	INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	2.69746	3.75188	4.8063	0.00380414	1.96248e-7	0.0317723	9.99962e-6
chr21	45531578	45531673	18279227	0	-	0.715789	(0.59,1]	chr21	1550611	3	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	3.05674	3.7517250000000004	4.44671	0.00931497	9.4094e-4	0.0586162	0.0106352
chr2	219218213	219218303	3191255	0	-	0.622222	(0.59,1]	chr2	280845	2	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	48	2	2.67996	3.7516049999999996	4.82325	0.00470478	0.002381	0.0363963	0.0216895
chr1	15940175	15940268	71945	0	+	0.387097	(0.36,0.39]	chr1	8126	9	UTR3	UTR3:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.06292	3.75147	4.44002	0.00499846	2.93008e-6	0.0370021	1.09386e-4
chr8	123207688	123207784	9588605	0	+	0.666667	(0.59,1]	chr8	727199	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	4	116	2	2.67401	3.75124	4.82847	0.00166951	1.01132e-6	0.0173932	4.03099e-5
chr12	120498398	120498493	13116609	0	+	0.326316	(0.29,0.33]	chr12	1023820	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000392508.2:ENST00000242577.11:ENST00000552870.1:ENST00000552316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	3.3158	3.7511200000000002	4.18644	1.56826e-5	5.12822e-6	3.99464e-4	1.73456e-4
chr1	202767418	202767489	1452139	0	-	0.56338	(0.53,0.59]	chr1	145890	1	SS3_PROX	SS3_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.35511	3.751065	5.14702	0.0445399	1.58171e-8	0.172163	1.14917e-6
chr18	3025307	3025387	16985758	0	-	0.5375	(0.53,0.59]	chr18	1396592	4	EXON_PSEUDO	EXON_PSEUDO	RP11-193E15.4	ENSG00000277447.1	ENST00000618479.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	50	2	3.02054	3.7510250000000003	4.48151	0.00577011	2.61211e-6	0.0426551	8.99269e-5
chr17	5438973	5439073	16421575	0	-	0.76	(0.59,1]	chr17	1338199	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000570805.1:ENST00000573406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	73	2	2.05954	3.75095	5.44236	0.00660398	2.02004e-4	0.045496	0.00317801
chrX	153954754	153954852	19275640	0	-	0.744898	(0.59,1]	chrX	1637914	8	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.11074	3.75093	5.39112	0.0305	2.53595e-4	0.130204	0.00381472
chr6	41599330	41599428	7149866	0	+	0.561224	(0.53,0.59]	chr6	551565	5	UTR3	UTR3:EXON_MRNA	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.74542	3.750785	3.75615	2.30148e-4	2.16536e-4	0.00361336	0.00352524
chr8	94511130	94511230	9960211	0	-	0.4	(0.39,0.42]	chr8	751282	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.18155	3.7506199999999996	5.31969	0.0283931	2.68682e-5	0.127654	6.19143e-4
chr5	134609622	134609674	6846411	0	-	0.403846	(0.39,0.42]	chr5	523871	2	CDS	CDS:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000508363.5:ENST00000502539.5:ENST00000439578.5:ENST00000509937.5:ENST00000509730.5:ENST00000503318.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.19588	3.75059	4.3053	0.00321212	7.30538e-6	0.0280721	2.13219e-4
chr2	61873001	61873056	2691376	0	-	0.436364	(0.42,0.455]	chr2	240547	1	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	3.31073	3.750515	4.1903	1.94134e-4	4.41719e-7	0.00332542	1.99209e-5
chr1	171584418	171584479	537549	0	+	0.47541	(0.455,0.49]	chr1	57722	1	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.13787	3.75047	4.36307	0.00218641	4.66183e-4	0.0208941	0.00616585
chr2	222571770	222571870	3196396	0	-	0.5	(0.49,0.53]	chr2	281658	50	UTR3	UTR3:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.11892	3.75042	4.38192	0.00398244	0.00259709	0.0322851	0.0229695
chr1	40073963	40074060	954675	0	-	0.505155	(0.49,0.53]	chr1	100850	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2:ENST00000641924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	2.87508	3.7504100000000005	4.62574	4.55699e-4	7.86745e-7	0.00645757	3.25904e-5
chr1	21862051	21862115	891066	0	-	0.609375	(0.59,1]	chr1	92442	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.24689	3.7503450000000003	5.2538	0.00890458	5.85045e-4	0.0565003	0.00793559
chr1	109313644	109313743	1219466	0	-	0.525253	(0.49,0.53]	chr1	118935	42	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.8671	3.75024	4.63338	0.0100489	9.56909e-4	0.0623334	0.010724
chr10	119174521	119174592	11718013	0	-	0.521127	(0.49,0.53]	chr10	893973	2	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000463322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.8671	3.75024	4.63338	0.0100489	9.56909e-4	0.0623334	0.010724
chr11	64220219	64220272	11979485	0	+	0.509434	(0.49,0.53]	chr11	918795	1	CDS	CDS:EXON_MRNA	FERMT3	ENSG00000149781.13	ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000540957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.8671	3.75024	4.63338	0.0100489	9.56909e-4	0.0623334	0.010724
chr16	18798700	18798783	15877141	0	-	0.493976	(0.49,0.53]	chr16	1269320	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5:ENST00000567969.1:ENST00000566391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.38935	3.75024	5.11113	0.00488689	1.58109e-8	0.0376157	1.14917e-6
chr19	3782517	3782617	17429121	0	-	0.53	(0.49,0.53]	chr19	1454438	3	SS5_PROX	SS5_PROX:INTRON	MATK	ENSG00000007264.15	ENST00000619596.4:ENST00000395040.6:ENST00000310132.11:ENST00000395045.6:ENST00000585778.5:ENST00000590493.5:ENST00000588983.5:ENST00000587180.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.8671	3.75024	4.63338	0.0100489	9.56909e-4	0.0623334	0.010724
chr15	50197639	50197709	14925296	0	+	0.442857	(0.42,0.455]	chr15	1173403	3	CDS	CDS:UTR5:EXON_MRNA	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8:ENST00000544960.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	3.05889	3.7501949999999997	4.4415	0.00524205	2.94164e-6	0.0399155	9.91141e-5
chr10	73766759	73766853	11115824	0	+	0.43617	(0.42,0.455]	chr10	845893	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	3.52659	3.75015	3.97371	6.87022e-4	6.07552e-5	0.00876781	0.00121305
chr11	5301113	5301204	12241097	0	-	0.450549	(0.42,0.455]	chr11	946134	1	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	37	2	3.52659	3.75015	3.97371	6.87022e-4	6.07552e-5	0.00876781	0.00121305
chr8	47929932	47930012	9817115	0	-	0.325	(0.29,0.33]	chr8	742843	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	2.73801	3.74996	4.76191	1.58187e-4	2.22391e-7	0.00285352	1.10935e-5
chr17	8548312	8548408	16433738	0	-	0.34375	(0.33,0.36]	chr17	1340769	1	CDS	CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000459986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.51887	3.7499599999999997	4.98105	0.0358636	1.32493e-4	0.147298	0.00227943
chr6	85557975	85558038	7825203	0	-	0.349206	(0.33,0.36]	chr6	599485	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000503906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.51887	3.7499599999999997	4.98105	0.0358636	1.32493e-4	0.147298	0.00227943
chr5	32414968	32415041	6519510	0	-	0.493151	(0.49,0.53]	chr5	505033	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.38097	3.7498250000000004	5.11868	0.0425419	9.66505e-5	0.167547	0.00175267
chrX	30829433	30829533	19012162	0	-	0.39	(0.36,0.39]	chrX	1617544	21	UTR3	UTR3:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.69711	3.7496799999999997	3.80225	1.85308e-4	1.63058e-5	0.00322093	4.12921e-4
chr19	38380948	38380999	17320741	0	+	0.54902	(0.53,0.59]	chr19	1433572	2	CDS	CDS:EXON_MRNA:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000590331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	3.62204	3.74967	3.8773	4.3021e-4	5.13471e-6	0.00620274	1.58468e-4
chr19	49908049	49908143	17608176	0	-	0.457447	(0.455,0.49]	chr19	1484490	14	UTR3	UTR3:EXON_MRNA:INTRON	IL4I1:NUP62	ENSG00000104951.16:ENSG00000213024.12	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	3.40009	3.749645	4.0992	0.00120619	2.73975e-5	0.0129255	6.95757e-4
chr1	54850784	54850880	1030556	0	-	0.53125	(0.53,0.59]	chr1	106987	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.38191	3.7494899999999998	5.11707	0.00477439	1.35965e-4	0.0368489	0.00231202
chr5	126836264	126836358	6202849	0	+	0.319149	(0.29,0.33]	chr5	483234	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.92065	3.749385	4.57812	0.0117842	9.55291e-7	0.0686664	3.84721e-5
chr13	25097195	25097295	13647295	0	+	0.43	(0.42,0.455]	chr13	1075795	10	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	36	494	2	3.3735	3.7493	4.1251	3.51289e-9	1e-12	3.4096e-7	2.25522e-10
chr11	118755452	118755503	12625486	0	-	0.352941	(0.33,0.36]	chr11	979534	2	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.36959	3.748995	4.1284	0.00407303	0.0014168	0.0324137	0.0145694
chr2	159729122	159729175	2162839	0	+	0.339623	(0.33,0.36]	chr2	199169	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.36959	3.748995	4.1284	0.00407303	0.0014168	0.0324137	0.0145694
chr4	25747729	25747828	5361846	0	-	0.333333	(0.33,0.36]	chr4	430113	4	UTR3	UTR3:EXON_MRNA	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000513416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.36959	3.748995	4.1284	0.00407303	0.0014168	0.0324137	0.0145694
chr17	80136227	80136281	16704241	0	-	0.37037	(0.36,0.39]	chr17	1376647	1	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000576573.1:ENST00000570625.5:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.46497	3.748905	4.03284	0.00105709	4.15492e-5	0.0123035	8.8376e-4
chr17	43015575	43015672	16550647	0	-	0.57732000000000006	(0.53,0.59]	chr17	1357992	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.94125	3.748825	4.5564	0.0012261800000000001	1.54434e-6	0.0135648	5.75816e-5
chr7	103723139	103723191	8965541	0	-	0.403846	(0.39,0.42]	chr7	686371	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.16612	3.74871	4.3313	0.00209984	4.03393e-4	0.0204266	0.00550292
chr1	100876793	100876864	1200289	0	-	0.464789	(0.455,0.49]	chr1	117214	1	CDS	CDS:EXON_MRNA:INTRON	EXTL2	ENSG00000162694.14	ENST00000535414.5:ENST00000370113.7:ENST00000370114.8:ENST00000450240.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr1	156465685	156465782	1315199	0	-	0.463918	(0.455,0.49]	chr1	133558	21	UTR3	UTR3:EXON_MRNA	MEF2D	ENSG00000116604.18	ENST00000348159.9:ENST00000464356.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr12	113637591	113637691	13549836	0	-	0.46	(0.455,0.49]	chr12	1066628	516	INTRON	INTRON	LINC01234	ENSG00000249550.7	ENST00000661760.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr13	39044181	39044275	13699330	0	+	0.457447	(0.455,0.49]	chr13	1079262	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8:ENST00000485407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr15	34245779	34245867	15203859	0	-	0.465909	(0.455,0.49]	chr15	1196767	2	CDS	CDS:EXON_MRNA	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr17	38322125	38322212	16215834	0	+	0.482759	(0.455,0.49]	chr17	1310390	1	CDS	CDS:EXON_MRNA	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr17	49040023	49040091	16256533	0	+	0.470588	(0.455,0.49]	chr17	1317638	2	CDS	CDS:EXON_MRNA:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr20	23634753	23634853	17930496	0	-	0.48	(0.455,0.49]	chr20	1517750	1	SS5_PROX	SS5_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr20	50532677	50532777	17815698	0	+	0.46	(0.455,0.49]	chr20	1507101	217	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr20	62278470	62278568	17861080	0	+	0.489796	(0.455,0.49]	chr20	1509921	3	EXON_MRNA	EXON_MRNA:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr22	38984074	38984152	18368304	0	+	0.461538	(0.455,0.49]	chr22	1562797	1	CDS	CDS:EXON_MRNA:INTRON	APOBEC3A:APOBEC3B	ENSG00000128383.13:ENSG00000179750.16	ENST00000618553.1:ENST00000333467.4:ENST00000407298.7:ENST00000402182.7:ENST00000335760.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr7	3687790	3687890	8102897	0	+	0.47	(0.455,0.49]	chr7	619346	453	INTRON	INTRON	SDK1	ENSG00000146555.19	ENST00000404826.7:ENST00000615806.4:ENST00000389531.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr9	36337085	36337184	10641082	0	-	0.484848	(0.455,0.49]	chr9	805481	8	UTR3	UTR3:EXON_MRNA	RNF38	ENSG00000137075.18	ENST00000353739.8:ENST00000259605.11:ENST00000377885.6:ENST00000357058.7:ENST00000350199.8:ENST00000611646.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.47671	3.7485550000000005	4.0204	0.0368644	0.00736097	0.145024	0.0490627
chr1	22091715	22091815	93081	0	+	0.2	[0,0.29]	chr1	10799	3	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.0735	3.7484	4.4233	0.00785095	3.05074e-6	0.0520241	1.02351e-4
chr7	16694833	16694918	8149075	0	+	0.435294	(0.42,0.455]	chr7	622154	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000446596.5:ENST00000452975.6:ENST00000407633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	60	2	3.65978	3.7483750000000002	3.83697	2.09396e-5	6.30836e-6	5.04211e-4	2.05914e-4
chr1	145994358	145994437	1270259	0	-	0.493671	(0.49,0.53]	chr1	125534	2	CDS	CDS:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1:ENST00000425134.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	390	2	3.39217	3.74822	4.10427	3.73272e-9	8.25451e-12	3.30696e-7	1.60385e-9
chr12	120134532	120134629	13579060	0	-	0.56701	(0.53,0.59]	chr12	1068549	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000549815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	3.05775	3.74819	4.43863	0.00254763	6.94592e-4	0.0233955	0.00846751
chr5	141320506	141320599	6875007	0	-	0.569892	(0.53,0.59]	chr5	526347	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TAF7	ENSG00000178913.8	ENST00000624699.1:ENST00000313368.8:ENST00000624761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	34	2	3.05775	3.74819	4.43863	0.00254763	6.94592e-4	0.0233955	0.00846751
chrX	26748221	26748317	18623784	0	+	0.520833	(0.49,0.53]	chrX	1590347	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	VENTXP1:HMGA1P1	ENSG00000259849.2:ENSG00000236683.3	ENST00000674719.1:ENST00000415560.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	4	67	2	2.46958	3.74791	5.02624	0.00344146	3.25781e-8	0.0292838	2.14209e-6
chr10	97225923	97226022	11644415	0	-	0.464646	(0.455,0.49]	chr10	887008	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGAP19-SLIT1:ARHGAP19	ENSG00000269891.2:ENSG00000213390.11	ENST00000479633.2:ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	3.2935	3.7476949999999998	4.20189	0.00397662	3.58585e-5	0.0322851	7.84153e-4
chr2	112657126	112657226	2001854	0	+	0.5	(0.49,0.53]	chr2	190031	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	127	2	3.08435	3.74756	4.41077	6.44581e-6	4.8374e-9	2.10138e-4	4.12233e-7
chr16	165091	165156	15480690	0	+	0.615385	(0.59,1]	chr16	1224166	2	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3:ENST00000496585.1	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	21	564	2	3.52862	3.74738	3.96614	6.71485e-8	2.00196e-8	3.97943e-6	1.53734e-6
chr11	34100742	34100841	11905502	0	+	0.414141	(0.39,0.42]	chr11	909587	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.70591	3.747345	4.78878	0.0185716	4.27222e-4	0.0932453	0.00577513
chr2	65253795	65253864	1854223	0	+	0.405797	(0.39,0.42]	chr2	175958	2	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.70591	3.747345	4.78878	0.0185716	4.27222e-4	0.0932453	0.00577513
chr2	157766104	157766196	2952314	0	-	0.402174	(0.39,0.42]	chr2	262121	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACVR1	ENSG00000115170.16	ENST00000682025.1:ENST00000683487.1:ENST00000682300.1:ENST00000263640.7:ENST00000683441.1:ENST00000684595.1:ENST00000682690.1:ENST00000434821.7:ENST00000683404.1:ENST00000683426.1:ENST00000684104.1:ENST00000409283.6:ENST00000684348.1:ENST00000683820.1:ENST00000672582.1:ENST00000673324.1:ENST00000424669.6:ENST00000539637.6:ENST00000410057.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.70591	3.747345	4.78878	0.0185716	4.27222e-4	0.0932453	0.00577513
chr4	102650536	102650618	5562752	0	-	0.414634	(0.39,0.42]	chr4	444208	1	CDS	CDS:UTR3:EXON_MRNA	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1:ENST00000508141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.70591	3.747345	4.78878	0.0185716	4.27222e-4	0.0932453	0.00577513
chr9	92240855	92240908	10737026	0	-	0.396226	(0.39,0.42]	chr9	812243	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000375627.1:ENST00000474340.1:ENST00000684575.1:ENST00000467876.2:ENST00000473915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.70591	3.747345	4.78878	0.0185716	4.27222e-4	0.0932453	0.00577513
chr5	140529416	140529511	6255130	0	+	0.431579	(0.42,0.455]	chr5	487634	14	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	3.50825	3.74727	3.98629	5.86898e-5	2.11853e-6	0.00129243	7.50523e-5
chr7	100633000	100633061	8952298	0	-	0.688525	(0.59,1]	chr7	684203	1	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473571.1:ENST00000475011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	1.58352	3.74727	5.91102	0.0477456	2.06903e-5	0.179958	4.99825e-4
chr1	47280530	47280627	985991	0	-	0.391753	(0.39,0.42]	chr1	104121	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	36	2	2.38682	3.747215	5.10761	0.00228306	5.12039e-5	0.0209856	0.00114668
chr9	97658639	97658691	10380766	0	+	0.403846	(0.39,0.42]	chr9	781784	1	CDS	CDS:EXON_MRNA	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.73294	3.7471750000000004	3.76141	0.0190864	2.14058e-4	0.0958835	0.00359478
chr18	31536201	31536277	16809055	0	+	0.407895	(0.39,0.42]	chr18	1386456	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.22707	3.747095	5.26712	0.00574688	3.45202e-9	0.0426551	3.09496e-7
chr14	96223446	96223545	14473844	0	+	0.424242	(0.42,0.455]	chr14	1130585	2	INTRON	INTRON	BDKRB2:RP11-404P21.8	ENSG00000168398.7:ENSG00000258691.1	ENST00000542454.2:ENST00000554311.2:ENST00000539359.1:ENST00000553811.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.36247	3.74708	5.13169	0.0462889	8.60227e-5	0.176878	0.00160731
chr18	12984114	12984190	16763985	0	+	0.421053	(0.42,0.455]	chr18	1382764	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000592582.5:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.36247	3.74708	5.13169	0.0462889	8.60227e-5	0.176878	0.00160731
chr1	85267726	85267811	1134562	0	-	0.494118	(0.49,0.53]	chr1	113022	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCL10	ENSG00000142867.14	ENST00000648566.1:ENST00000620248.2:ENST00000650582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.70307	3.7469650000000003	4.79086	0.00363585	4.20783e-4	0.0298137	0.00611538
chr6	52264013	52264108	7736580	0	-	0.336842	(0.33,0.36]	chr6	593677	1	UTR3	UTR3:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.3227	3.74696	4.17122	0.00222616	1.72402e-5	0.0211992	4.33531e-4
chr7	105117153	105117251	8970787	0	-	0.357143	(0.33,0.36]	chr7	686639	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SRPK2	ENSG00000135250.17	ENST00000493638.1:ENST00000465072.5:ENST00000393651.8:ENST00000357311.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	3.3227	3.74696	4.17122	0.00222616	1.72402e-5	0.0211992	4.33531e-4
chr19	40627069	40627164	17330515	0	+	0.631579	(0.59,1]	chr19	1436066	2	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000595118.5:ENST00000318809.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	129	2	3.28558	3.746925	4.20827	3.5027e-4	1.67518e-6	0.00532165	6.16435e-5
chr1	150966808	150966862	1291377	0	-	0.462963	(0.455,0.49]	chr1	128680	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	79	2	2.96139	3.7467250000000005	4.53206	2.95549e-4	2.46504e-8	0.00467597	1.68927e-6
chr2	135907315	135907407	2898311	0	-	0.456522	(0.455,0.49]	chr2	258581	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000478212.5:ENST00000489964.5:ENST00000422708.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	86	2	3.63654	3.7467	3.85686	3.17743e-6	5.71015e-7	1.16721e-4	2.4806e-5
chr17	64499922	64500022	16639707	0	-	0.41	(0.39,0.42]	chr17	1368474	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	3.68712	3.7466749999999998	3.80623	7.67155e-6	4.41139e-7	2.20857e-4	2.21548e-5
chr22	36511691	36511786	18499600	0	-	0.526316	(0.49,0.53]	chr22	1578411	3	CDS	CDS:UTR3:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000462641.1:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	3.68499	3.74662	3.80825	2.9991e-4	7.68944e-6	0.00472028	2.20857e-4
chr1	65621352	65621405	253526	0	+	0.339623	(0.33,0.36]	chr1	28883	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1:ENST00000471762.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	3.19872	3.746555	4.29439	6.97647e-5	9.429e-6	0.00134581	2.89287e-4
chrX	155889466	155889566	18923697	0	+	0.51	(0.49,0.53]	chrX	1612628	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000463317.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	35	2	2.59881	3.74643	4.89405	0.00184545	2.57983e-4	0.0178046	0.00419998
chr5	86884323	86884416	6679350	0	-	0.44086	(0.42,0.455]	chr5	515299	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2161E19.1	ENSG00000242477.1	ENST00000486625.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	48	2	3.61323	3.746225	3.87922	1.04705e-4	2.83914e-5	0.0020295	6.46853e-4
chr8	30352840	30352937	9253461	0	+	0.618557	(0.59,1]	chr8	708964	11	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	8	239	2	3.31664	3.74611	4.17558	2.38981e-5	6.48805e-8	6.19621e-4	3.8555e-6
chr1	109236041	109236106	398095	0	+	0.492308	(0.49,0.53]	chr1	38587	2	CDS	CDS:EXON_MRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	3.60476	3.746035	3.88731	4.52633e-4	4.40111e-6	0.00642319	1.3969e-4
chr13	99562690	99562758	13865655	0	+	0.382353	(0.36,0.39]	chr13	1087237	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.62565	3.7458400000000003	4.86603	0.0219469	1.68962e-4	0.103959	0.00297945
chr3	136298011	136298072	3762831	0	+	0.655738	(0.59,1]	chr3	321863	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.5215	3.745825	4.97015	0.032241	0.00140057	0.135671	0.0144327
chr16	29455628	29455714	15625963	0	+	0.755814	(0.59,1]	chr16	1239120	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SLX1B:SLX1B-SULT1A4	ENSG00000181625.17:ENSG00000260280.5	ENST00000330181.9:ENST00000565219.1:ENST00000351581.4:ENST00000344620.10:ENST00000567248.1:ENST00000564950.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	35	2	2.92097	3.7456699999999996	4.57037	0.0102634	0.0054994	0.0628742	0.0402071
chr1	213273314	213273412	707330	0	+	0.438776	(0.42,0.455]	chr1	71710	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.81137	3.74559	4.67981	0.0120386	5.38444e-4	0.0700876	0.00744072
chr2	239150456	239150555	3242103	0	-	0.444444	(0.42,0.455]	chr2	285860	54	INTRON	INTRON	HDAC4	ENSG00000068024.17	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000461113.5:ENST00000553145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	2.81137	3.74559	4.67981	0.0120386	5.38444e-4	0.0700876	0.00744072
chr11	47580590	47580657	11940505	0	+	0.373134	(0.36,0.39]	chr11	913278	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000528192.5:ENST00000534208.5:ENST00000530295.5:ENST00000263774.9:ENST00000534716.2:ENST00000533105.1:ENST00000524568.1:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	3.02397	3.7455549999999995	4.46714	0.00674398	0.00155822	0.0461258	0.0156889
chr18	23557116	23557190	17037534	0	-	0.378378	(0.36,0.39]	chr18	1400613	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.02397	3.7455549999999995	4.46714	0.00674398	0.00155822	0.0461258	0.0156889
chr22	30973335	30973416	18344819	0	+	0.419753	(0.39,0.42]	chr22	1559165	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000566220.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.38313	3.7453700000000003	5.10761	0.0128066	5.12039e-5	0.0725185	0.00114668
chr20	49278641	49278738	17812169	0	+	0.546392	(0.53,0.59]	chr20	1506708	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000667889.1:ENST00000663883.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	294	2	3.47448	3.7452799999999997	4.01608	4.24438e-8	2.50456e-10	2.96006e-6	3.07134e-8
chr14	69460726	69460823	14373479	0	+	0.453608	(0.42,0.455]	chr14	1123181	23	UTR3	UTR3:EXON_MRNA:INTRON	SLC39A9	ENSG00000029364.12	ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000555840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.94263	3.7452750000000004	4.54792	0.00766873	9.66045e-4	0.0503696	0.0115185
chr14	100276587	100276648	14487326	0	+	0.42623	(0.42,0.455]	chr14	1131907	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000554804.1:ENST00000651219.1:ENST00000623799.1:ENST00000554579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.94263	3.7452750000000004	4.54792	0.00766873	9.66045e-4	0.0503696	0.0115185
chr8	43126237	43126336	9308536	0	+	0.424242	(0.42,0.455]	chr8	712880	35	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.94263	3.7452750000000004	4.54792	0.00766873	9.66045e-4	0.0503696	0.0115185
chrX	123667105	123667191	19198842	0	-	0.430233	(0.42,0.455]	chrX	1632606	1	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.94263	3.7452750000000004	4.54792	0.00766873	9.66045e-4	0.0503696	0.0115185
chr2	200823170	200823269	2309399	0	+	0.353535	(0.33,0.36]	chr2	208970	11	UTR3	UTR3:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000409600.6:ENST00000409226.5	protein_coding	protein_coding	protein_coding	protein_coding	8	85	2	3.59868	3.7452199999999998	3.89176	8.657e-7	9.31475e-8	3.53908e-5	5.87972e-6
chr19	44985217	44985303	17350248	0	+	0.453488	(0.42,0.455]	chr19	1439364	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000587537.5:ENST00000589158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	3.71365	3.745155	3.77666	2.63375e-4	1.85215e-4	0.00427022	0.00296795
chr3	14130821	14130888	3319367	0	+	0.626866	(0.59,1]	chr3	292049	1	CDS	CDS:UTR3:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000432444.1:ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.32455	3.7451549999999996	5.16576	0.0520547	6.55716e-4	0.193787	0.0080931
chr4	39456471	39456538	5383248	0	-	0.477612	(0.455,0.49]	chr4	431465	2	CDS	CDS:EXON_MRNA:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5:ENST00000511075.5:ENST00000437992.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	94	2	3.49531	3.7451499999999998	3.99499	1.91791e-6	6.08319e-7	7.6073e-5	2.6182e-5
chr17	42999840	42999932	16230889	0	+	0.391304	(0.39,0.42]	chr17	1313738	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL27	ENSG00000131469.15	ENST00000589037.5:ENST00000253788.12:ENST00000593262.1:ENST00000588830.1:ENST00000589913.6:ENST00000590864.2:ENST00000586277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.71912	3.7450900000000003	4.77106	0.0163125	3.03764e-4	0.0866586	0.00472028
chr8	30066776	30066847	9780489	0	-	0.464789	(0.455,0.49]	chr8	739513	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000521934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	62	2	2.32778	3.7449649999999997	5.16215	2.816e-4	5.04348e-5	0.00415624	0.00113788
chr20	49113530	49113626	17999390	0	-	0.354167	(0.33,0.36]	chr20	1525563	3	UTR3	UTR3:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.97606	3.7449199999999996	4.51378	0.00871774	0.00118147	0.0558165	0.0127276
chr9	87731197	87731288	10347591	0	+	0.340659	(0.33,0.36]	chr9	778737	2	UTR3	UTR3:EXON_MRNA	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000677349.1:ENST00000677761.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.97606	3.7449199999999996	4.51378	0.00871774	0.00118147	0.0558165	0.0127276
chr9	125302573	125302657	10461131	0	+	0.357143	(0.33,0.36]	chr9	788019	4	CDS	CDS:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000497580.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000265956.8:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.97606	3.7449199999999996	4.51378	0.00871774	0.00118147	0.0558165	0.0127276
chr12	56642457	56642518	13352153	0	-	0.442623	(0.42,0.455]	chr12	1051751	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000550162.1:ENST00000552959.5:ENST00000551570.5:ENST00000553007.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	140	2	3.306	3.744855	4.18371	4.32793e-7	8.98075e-8	2.18091e-5	5.08654e-6
chrX	154432362	154432459	18917872	0	+	0.649485	(0.59,1]	chrX	1611898	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	148	2	3.3887	3.7448	4.1009	4.68905e-5	3.31352e-6	0.00107286	1.09618e-4
chr12	4278759	4278839	12704224	0	+	0.525	(0.49,0.53]	chr12	985520	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000536537.2:ENST00000675468.1:ENST00000536795.1:ENST00000541542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	3.73494	3.74477	3.7546	0.0189345	2.09468e-4	0.0934721	0.00327655
chr1	84646255	84646353	1131614	0	-	0.295918	(0.29,0.33]	chr1	112678	27	UTR3	UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.67277	3.744475	4.81618	0.0255386	2.74489e-4	0.117089	0.00406677
chr18	204563	204627	16716133	0	+	0.328125	(0.29,0.33]	chr18	1379145	1	CDS	CDS:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.67277	3.744475	4.81618	0.0255386	2.74489e-4	0.117089	0.00406677
chr19	2037464	2037555	17421443	0	-	0.318681	(0.29,0.33]	chr19	1453116	1	UTR3	UTR3:EXON_MRNA	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.67277	3.744475	4.81618	0.0255386	2.74489e-4	0.117089	0.00406677
chr4	77038327	77038423	4900571	0	+	0.291667	(0.29,0.33]	chr4	403561	17	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.67277	3.744475	4.81618	0.0255386	2.74489e-4	0.117089	0.00406677
chr6	43055896	43055951	7706894	0	-	0.563636	(0.53,0.59]	chr6	591197	1	CDS	CDS:EXON_MRNA:INTRON	RP1-20C7.7:MRPL2	ENSG00000288564.1:ENSG00000112651.12	ENST00000673761.1:ENST00000388752.8:ENST00000230413.9:ENST00000489623.1:ENST00000470667.5:ENST00000491898.5:ENST00000480286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.90953	3.7444200000000003	5.57931	0.0517711	1.05602e-5	0.193577	2.89015e-4
chr1	99707714	99707812	1197326	0	-	0.418367	(0.39,0.42]	chr1	116831	39	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.99507	3.744155	4.49324	0.00637824	0.00108192	0.0449937	0.0124943
chr11	5664908	5665004	12244786	0	-	0.395833	(0.39,0.42]	chr11	946299	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2643I7.5:TRIM5	ENSG00000239920.2:ENSG00000132256.20	ENST00000380259.7:ENST00000642298.1:ENST00000380034.8:ENST00000380027.5:ENST00000433961.5:ENST00000684655.1:ENST00000396847.7:ENST00000682968.1:ENST00000438025.5:ENST00000483835.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.99507	3.744155	4.49324	0.00637824	0.00108192	0.0449937	0.0124943
chr2	70281542	70281633	2724295	0	-	0.373626	(0.36,0.39]	chr2	242721	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.06292	3.743975	4.42503	0.00499846	0.00133228	0.0370021	0.0144372
chr6	31797856	31797882	7662597	0	-	0.384615	(0.36,0.39]	chr6	585351	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.06292	3.743975	4.42503	0.00499846	0.00133228	0.0370021	0.0144372
chr7	30012758	30012857	8748467	0	-	0.373737	(0.36,0.39]	chr7	667456	23	UTR3	UTR3:EXON_MRNA	FKBP14	ENSG00000106080.11	ENST00000222803.10	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.06292	3.743975	4.42503	0.00499846	0.00133228	0.0370021	0.0144372
chr9	33941790	33941862	10633639	0	-	0.388889	(0.36,0.39]	chr9	803849	3	CDS	CDS:UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.06292	3.743975	4.42503	0.00499846	0.00133228	0.0370021	0.0144372
chr6	31639130	31639226	7661362	0	-	0.552083	(0.53,0.59]	chr6	584799	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000422948.5:ENST00000464126.1:ENST00000464869.5:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	3.7312	3.7436749999999996	3.75615	2.16536e-4	1.38467e-5	0.00361336	3.5918e-4
chr14	102050070	102050148	14495920	0	+	0.525641	(0.49,0.53]	chr14	1133282	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	2.45352	3.743665	5.03381	0.00164469	1.49689e-4	0.0171491	0.0024973
chr11	837249	837301	11759150	0	+	0.557692	(0.53,0.59]	chr11	898590	1	CDS	CDS:EXON_MRNA	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000529810.5:ENST00000526693.5:ENST00000532045.6:ENST00000527341.5:ENST00000530726.5:ENST00000528011.2:ENST00000530320.5:ENST00000532075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	3.20114	3.74359	4.28604	6.63641e-5	9.59485e-6	0.00129398	2.93255e-4
chr12	8941634	8941725	13197231	0	-	0.384615	(0.36,0.39]	chr12	1033916	9	UTR3	UTR3:EXON_MRNA:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1:ENST00000543704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.76778	3.74352	4.71926	0.00365703	5.29682e-4	0.0307238	0.006804
chr3	39407602	39407653	3423784	0	+	0.372549	(0.36,0.39]	chr3	297991	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPSA	ENSG00000168028.14	ENST00000477325.1:ENST00000475346.1:ENST00000487876.1:ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000444512.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.76778	3.74352	4.71926	0.00365703	5.29682e-4	0.0307238	0.006804
chr7	118188309	118188409	8485436	0	+	0.4	(0.39,0.42]	chr7	648013	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LSM8	ENSG00000128534.8	ENST00000424702.1:ENST00000422760.1:ENST00000249299.7:ENST00000411938.1	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	2.59477	3.743475	4.89218	1.97342e-4	1.6518e-4	0.00313008	0.0029267300000000002
chr21	44849881	44849980	18277410	0	-	0.30303	(0.29,0.33]	chr21	1550248	4	UTR3	UTR3:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8	protein_coding	protein_coding	protein_coding	protein_coding	11	121	2	3.3158	3.74341	4.17102	5.12822e-6	2.47159e-10	1.73456e-4	3.03517e-8
chr4	73092011	73092107	5466131	0	-	0.4375	(0.42,0.455]	chr4	437754	15	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	3.50016	3.743225	3.98629	9.02287e-6	2.11853e-6	2.78052e-4	7.50523e-5
chr14	23128107	23128196	14529526	0	-	0.561798	(0.53,0.59]	chr14	1138646	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	99	2	3.29588	3.743215	4.19055	1.96478e-4	4.3974e-8	0.00335505	2.75435e-6
chr1	26700737	26700836	110186	0	+	0.464646	(0.455,0.49]	chr1	13245	28	INTRON	INTRON	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6	protein_coding	protein_coding	protein_coding	protein_coding	10	139	2	3.61899	3.74306	3.86713	7.30786e-7	7.45391e-9	3.41098e-5	6.03233e-7
chr19	38838530	38838598	17561087	0	-	0.544118	(0.53,0.59]	chr19	1475071	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	79	2	3.2425	3.74298	4.24346	2.6381e-4	3.43541e-7	0.00427022	1.60752e-5
chr1	150810962	150811058	1290606	0	-	0.395833	(0.39,0.42]	chr1	128516	14	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.49701	3.74263	4.98825	0.0339607	1.62756e-4	0.141431	0.00266622
chr1	202736212	202736302	1451796	0	-	0.411111	(0.39,0.42]	chr1	145799	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000649388.1:ENST00000650422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.49701	3.74263	4.98825	0.0339607	1.62756e-4	0.141431	0.00266622
chr14	27122356	27122456	14189156	0	+	0.42	(0.39,0.42]	chr14	1112197	162	INTRON	INTRON	RP11-384J4.2	ENSG00000258081.4	ENST00000656336.1:ENST00000552303.1	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	2.49701	3.74263	4.98825	0.0339607	1.62756e-4	0.141431	0.00266622
chr3	15227838	15227901	3325108	0	+	0.396825	(0.39,0.42]	chr3	292751	1	CDS	CDS:EXON_MRNA	CAPN7	ENSG00000131375.10	ENST00000253693.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.49701	3.74263	4.98825	0.0339607	1.62756e-4	0.141431	0.00266622
chr2	27040029	27040113	1690667	0	+	0.714286	(0.59,1]	chr2	165361	1	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000444135.5:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	3.08707	3.7425699999999997	4.39807	8.79989e-4	1.36238e-5	0.0107294	3.54656e-4
chr4	39780018	39780117	4802027	0	+	0.30303	(0.29,0.33]	chr4	396197	17	UTR3	UTR3:EXON_MRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.45373	3.7424850000000003	5.03124	0.0156405	9.06368e-5	0.084273700000000007	0.00167558
chr10	75222251	75222326	11126523	0	+	0.373333	(0.36,0.39]	chr10	846664	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000332211.10:ENST00000472137.5:ENST00000313132.8:ENST00000498394.5:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	108	2	3.72221	3.74222	3.76223	1.47311e-6	2.65708e-8	6.0905e-5	1.79757e-6
chr19	49930731	49930806	17373421	0	+	0.626667	(0.59,1]	chr19	1443980	1	CDS	CDS:UTR5:EXON_MRNA	ATF5	ENSG00000169136.12	ENST00000595125.5:ENST00000423777.7:ENST00000600336.1:ENST00000597227.5:ENST00000676286.1:ENST00000596658.1	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.28778	3.7421300000000004	5.19648	0.0556537	7.35336e-4	0.191528	0.00921643
chr1	35636309	35636370	938672	0	-	0.344262	(0.33,0.36]	chr1	98720	1	CDS	CDS:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.1452	3.74208	4.33896	0.00182033	9.8054e-5	0.0183913	0.00177549
chr10	13209910	13210010	10933894	0	+	0.33	(0.29,0.33]	chr10	832340	7	UTR3	UTR3:EXON_MRNA	MCM10	ENSG00000065328.17	ENST00000378714.8:ENST00000378694.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.92065	3.7420050000000002	4.56336	0.0117842	8.8231e-4	0.0686664	0.0101404
chr12	120211523	120211622	13579795	0	-	0.323232	(0.29,0.33]	chr12	1068824	12	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.92065	3.7420050000000002	4.56336	0.0117842	8.8231e-4	0.0686664	0.0101404
chr3	42784285	42784383	4142174	0	-	0.295918	(0.29,0.33]	chr3	346309	15	UTR3	UTR3:EXON_MRNA:INTRON	RP4-613B23.5:HIGD1A	ENSG00000280571.2:ENSG00000181061.14	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.92065	3.7420050000000002	4.56336	0.0117842	8.8231e-4	0.0686664	0.0101404
chr4	102657754	102657827	5562826	0	-	0.328767	(0.29,0.33]	chr4	444214	2	CDS	CDS:UTR3:EXON_MRNA	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.92065	3.7420050000000002	4.56336	0.0117842	8.8231e-4	0.0686664	0.0101404
chr9	78317739	78317804	10320973	0	+	0.307692	(0.29,0.33]	chr9	777276	2	CDS	CDS:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.92065	3.7420050000000002	4.56336	0.0117842	8.8231e-4	0.0686664	0.0101404
chr11	17075146	17075197	12295025	0	-	0.431373	(0.42,0.455]	chr11	950293	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000531908.5:ENST00000531008.5:ENST00000525828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	31	394	2	3.71074	3.7418050000000003	3.77287	3.45584e-10	6.17107e-11	4.53412e-8	8.86363e-9
chr1	957098	957185	825647	0	-	0.586207	(0.53,0.59]	chr1	81763	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5:ENST00000487214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	80	2	3.18707	3.7417249999999997	4.29638	3.55681e-4	2.26633e-7	0.00539248	1.12729e-5
chr6	70399214	70399281	7220388	0	+	0.552239	(0.53,0.59]	chr6	557281	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-462G2.1	ENSG00000237643.2	ENST00000671572.1:ENST00000418403.2:ENST00000667898.1	lncRNA	lncRNA	lncRNA	lncRNA	7	117	2	3.6295	3.7416650000000002	3.85383	5.99548e-6	2.41291e-7	1.97492e-4	1.188e-5
chr10	95263963	95264063	11630040	0	-	0.59	(0.53,0.59]	chr10	885740	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5:ENST00000493949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	57	2	3.38538	3.7410699999999997	4.09676	1.18366e-4	3.14727e-5	0.00207204	7.72298e-4
chr4	121817637	121817686	5626271	0	-	0.428571	(0.42,0.455]	chr4	448531	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	2.90098	3.7409600000000003	4.58094	1.4418e-4	9.22772e-10	0.00264215	9.7943e-8
chr16	29808229	29808292	15626788	0	+	0.52381	(0.49,0.53]	chr16	1239323	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	MAZ	ENSG00000103495.14	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000561855.1:ENST00000616501.4:ENST00000567444.5:ENST00000568411.5:ENST00000563012.1:ENST00000562557.5:ENST00000568544.5:ENST00000569978.1:ENST00000568282.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.13501	3.7409549999999996	5.3469	0.0287874	2.75121e-5	0.128869	6.30607e-4
chr1	109412076	109412130	1220479	0	-	0.5	(0.49,0.53]	chr1	119089	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000477897.1:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	2.01913	3.7409350000000003	5.46274	0.0111252	1.13094e-5	0.0665375	3.3464e-4
chr10	119172381	119172433	11717989	0	-	0.480769	(0.455,0.49]	chr10	893963	1	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.50904	3.7408099999999997	4.97258	0.0310515	1.84876e-4	0.131262	0.00296795
chr19	38376351	38376419	17320693	0	+	0.588235	(0.53,0.59]	chr19	1433559	1	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000591250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.14205	3.7407649999999997	5.33948	0.0123179	4.08763e-5	0.070688	9.64741e-4
chr11	5249857	5249956	12240563	0	-	0.535354	(0.53,0.59]	chr11	946068	1	INTRON	INTRON	CTD-2643I7.4	ENSG00000284931.1	ENST00000642908.1:ENST00000647543.1	protein_coding	protein_coding	protein_coding	protein_coding	20	305	2	3.25688	3.7405299999999997	4.22418	5.96079e-8	1.33258e-10	3.58554e-6	1.93965e-8
chr1	84498324	84498398	1130729	0	-	0.283784	[0,0.29]	chr1	112598	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	6	59	2	3.6203	3.74031	3.86032	1.29259e-5	7.54566e-7	3.72346e-4	3.14409e-5
chr6	32118774	32118866	7664434	0	-	0.48913	(0.455,0.49]	chr6	586000	1	CDS	CDS:EXON_MRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000475705.1:ENST00000492342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.84079	3.740285	4.63978	0.00201021	6.94032e-4	0.0190112	0.00876781
chr22	20585727	20585826	18299189	0	+	0.606061	(0.59,1]	chr22	1553508	1	CDS	CDS:UTR3:EXON_MRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1:ENST00000461076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	3.34171	3.74011	4.13851	0.00234977	5.66622e-5	0.0222173	0.00114182
chr12	122059560	122059659	13122405	0	+	0.515152	(0.49,0.53]	chr12	1024749	5	UTR3	UTR3:EXON_MRNA	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.92082	3.740055	4.55929	0.00827037	0.00116196	0.0534766	0.0130851
chr19	28466685	28466780	17525480	0	-	0.505263	(0.49,0.53]	chr19	1470935	4	EXON_LNCRNA	EXON_LNCRNA	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	2.92082	3.740055	4.55929	0.00827037	0.00116196	0.0534766	0.0130851
chr2	208241993	208242069	3142483	0	-	0.513158	(0.49,0.53]	chr2	277700	1	CDS	CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.92082	3.740055	4.55929	0.00827037	0.00116196	0.0534766	0.0130851
chr1	179342861	179342943	576402	0	+	0.439024	(0.42,0.455]	chr1	59815	1	CDS	CDS:EXON_MRNA	SOAT1	ENSG00000057252.13	ENST00000540564.5:ENST00000539888.5:ENST00000367619.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.62856	3.74003	3.8515	0.0119089	4.02604e-4	0.0686664	0.00549837
chr3	179570090	179570190	3928505	0	+	0.44	(0.42,0.455]	chr3	330157	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000491202.5:ENST00000429709.7:ENST00000494843.5:ENST00000490364.1:ENST00000487978.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	3.62856	3.74003	3.8515	0.0119089	4.02604e-4	0.0686664	0.00549837
chr4	107003592	107003692	5580226	0	-	0.43	(0.42,0.455]	chr4	445580	773	INTRON	INTRON	DKK2	ENSG00000155011.9	ENST00000285311.8:ENST00000513208.5:ENST00000510534.1:ENST00000510463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.62856	3.74003	3.8515	0.0119089	4.02604e-4	0.0686664	0.00549837
chr4	176327161	176327219	5242208	0	+	0.448276	(0.42,0.455]	chr4	421861	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000513139.1:ENST00000507001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	78	2	2.18978	3.73965	5.2895200000000004	0.00355167	3.1296e-9	0.0300064	2.83747e-7
chr6	151099771	151099852	7489283	0	+	0.493827	(0.49,0.53]	chr6	572335	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	MTHFD1L:RPL32P16	ENSG00000120254.16:ENSG00000219747.1	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000405720.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	7	106	2	3.72114	3.73963	3.75812	1.38104e-5	6.60628e-8	3.94563e-4	3.91775e-6
chr20	31605653	31605737	17748922	0	+	0.52381	(0.49,0.53]	chr20	1497940	3	CDS	CDS:EXON_MRNA	ID1	ENSG00000125968.9	ENST00000376105.4:ENST00000376112.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.33099	3.739615	4.14824	1.59567e-4	2.04708e-5	0.00263091	5.45523e-4
chr4	143996200	143996298	5696279	0	-	0.520408	(0.49,0.53]	chr4	451463	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	110	2	3.45044	3.7395300000000002	4.02862	1.22935e-5	2.32596e-8	3.58328e-4	1.60638e-6
chr1	37582777	37582856	947401	0	-	0.392405	(0.39,0.42]	chr1	99562	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000538069.2:ENST00000469191.1:ENST00000489146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.3298	3.73933	4.14886	0.00415881	0.00165391	0.0325842	0.0163614
chr14	21564694	21564791	14173675	0	+	0.412371	(0.39,0.42]	chr14	1109773	10	EXON_PSEUDO	EXON_PSEUDO	RBBP4P5	ENSG00000256737.1	ENST00000398583.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	3.3298	3.73933	4.14886	0.00415881	0.00165391	0.0325842	0.0163614
chr3	100386217	100386280	4325728	0	-	0.396825	(0.39,0.42]	chr3	360609	1	CDS	CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.3298	3.73933	4.14886	0.00415881	0.00165391	0.0325842	0.0163614
chr6	170657328	170657428	7556958	0	+	0.62	(0.59,1]	chr6	576995	169	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.84748	3.73927	4.63106	0.0124539	0.00537945	0.0712518	0.0406564
chr1	233666891	233666990	760206	0	+	0.444444	(0.42,0.455]	chr1	76989	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KCNK1	ENSG00000135750.15	ENST00000366621.8:ENST00000472190.5:ENST00000366620.5:ENST00000487728.1:ENST00000446915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	3.23707	3.7392	4.24133	0.00326918	2.71467e-4	0.0282494	0.00404536
chr5	138183168	138183265	6243531	0	+	0.494845	(0.49,0.53]	chr5	486343	1	CDS	CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.19483	3.7390749999999997	4.28332	0.00338762	6.77168e-5	0.0288632	0.0013157
chr16	18791766	18791865	15877063	0	-	0.262626	[0,0.29]	chr16	1269296	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	15	145	2	3.717	3.739005	3.76101	8.59267e-7	3.6064e-10	3.90593e-5	4.25214e-8
chr1	150578408	150578491	1288964	0	-	0.46988	(0.455,0.49]	chr1	128253	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	1.90433	3.738755	5.57318	0.0185466	6.11867e-6	0.0932453	1.83393e-4
chr12	98533958	98534052	13036717	0	+	0.478723	(0.455,0.49]	chr12	1014954	13	CDS	CDS:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.96925	3.73865	4.50805	0.00698725	0.00122223	0.0473262	0.0135383
chr18	35340310	35340390	17076724	0	-	0.475	(0.455,0.49]	chr18	1402856	2	CDS	CDS:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5:ENST00000590140.1:ENST00000589539.1:ENST00000593130.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.96925	3.73865	4.50805	0.00698725	0.00122223	0.0473262	0.0135383
chr6	27890381	27890481	7649652	0	-	0.52	(0.49,0.53]	chr6	582836	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C12	ENSG00000197153.5	ENST00000359303.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.52514	3.7383699999999997	3.9516	6.96459e-5	4.98361e-5	0.0013446	0.0011306
chr15	29708749	29708844	15183863	0	-	0.389474	(0.36,0.39]	chr15	1195093	3	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.48669	3.738345	3.99	6.40815e-5	6.1616e-5	0.00133408	0.00125657
chr1	42177826	42177925	964186	0	-	0.353535	(0.33,0.36]	chr1	101503	14	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.13748	3.73822	4.33896	0.00379835	0.00182033	0.0307587	0.0183913
chr6	30724967	30725062	7112228	0	+	0.526316	(0.49,0.53]	chr6	545067	7	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	497	2	3.72023	3.738105	3.75598	9.54036e-11	3.79432e-11	1.30477e-8	6.33012e-9
chr1	153645363	153645457	478438	0	+	0.404255	(0.39,0.42]	chr1	49171	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.0503	3.73807	4.42584	0.00570576	0.00199429	0.0424438	0.0189001
chr1	212103334	212103433	701717	0	+	0.40404	(0.39,0.42]	chr1	71180	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.0503	3.73807	4.42584	0.00570576	0.00199429	0.0424438	0.0189001
chr14	24439844	24439923	14535491	0	-	0.417722	(0.39,0.42]	chr14	1140198	2	UTR3	UTR3:EXON_MRNA	SDR39U1	ENSG00000100445.18	ENST00000544691.6:ENST00000399395.8:ENST00000556548.5:ENST00000553930.5:ENST00000556262.5:ENST00000538105.6:ENST00000554698.5:ENST00000556707.5:ENST00000555365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.0503	3.73807	4.42584	0.00570576	0.00199429	0.0424438	0.0189001
chr4	87374698	87374764	5518384	0	-	0.348485	(0.33,0.36]	chr4	441964	1	CDS	CDS:EXON_MRNA:INTRON	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507286.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	3.60198	3.737735	3.87349	6.01238e-4	4.76264e-6	0.00811676	1.49263e-4
chr7	99333353	99333417	8421692	0	+	0.46875	(0.455,0.49]	chr7	641750	1	CDS_START	CDS_START:CDS:EXON_MRNA	RP5-900K19.2:ARPC1A	ENSG00000284292.1:ENSG00000241685.10	ENST00000638617.1:ENST00000441989.6:ENST00000262942.10:ENST00000432786.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	61	2	3.61387	3.7377000000000002	3.86153	2.88949e-5	5.21014e-6	7.23839e-4	1.60138e-4
chr1	212035805	212035890	701026	0	+	0.529412	(0.49,0.53]	chr1	71097	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.48488	3.73761	4.99034	0.032052	1.6002e-4	0.133433	0.00286408
chr19	3467927	3468026	17202203	0	+	0.525253	(0.49,0.53]	chr19	1413755	53	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.48488	3.73761	4.99034	0.032052	1.6002e-4	0.133433	0.00286408
chr7	44569808	44569903	8800143	0	-	0.526316	(0.49,0.53]	chr7	671296	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX56	ENSG00000136271.11	ENST00000258772.10:ENST00000446987.5:ENST00000421223.5:ENST00000485367.5:ENST00000467318.5:ENST00000433257.5:ENST00000431640.5:ENST00000448192.1:ENST00000415758.1:ENST00000473924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.48488	3.73761	4.99034	0.032052	1.6002e-4	0.133433	0.00286408
chr16	2520123	2520218	15493415	0	+	0.621053	(0.59,1]	chr16	1227537	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.76006	3.73758	4.7151	0.00412279	0.00330486	0.0325842	0.027613
chr4	7773686	7773785	4712695	0	+	0.59596	(0.59,1]	chr4	390956	16	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.76006	3.73758	4.7151	0.00412279	0.00330486	0.0325842	0.027613
chr12	12875846	12875933	12740963	0	+	0.586207	(0.53,0.59]	chr12	990416	5	EXON_PSEUDO	EXON_PSEUDO	RPL13AP20	ENSG00000234498.3	ENST00000459725.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	132	2	3.53333	3.73754	3.94175	5.30972e-7	3.37749e-7	2.33308e-5	1.77431e-5
chr3	120330200	120330300	4404419	0	-	0.31	(0.29,0.33]	chr3	365211	58	UTR3	UTR3:EXON_MRNA	LRRC58	ENSG00000163428.4	ENST00000295628.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.83531	3.7375249999999998	4.63974	0.00228447	4.81181e-4	0.0209856	0.00677016
chr1	161470369	161470469	1333900	0	-	0.71	(0.59,1]	chr1	136940	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	501	13470	2	3.64482	3.73742	3.83002	5.19745e-10	2.18232e-10	5.87778e-8	3.00677e-8
chr8	58581740	58581833	9351271	0	+	0.494624	(0.49,0.53]	chr8	715167	1	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1:ENST00000447267.4	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	3.62647	3.7373950000000002	3.84832	2.59929e-5	5.8066e-6	6.68294e-4	1.75335e-4
chr12	64747711	64747780	13379084	0	-	0.362319	(0.36,0.39]	chr12	1054260	1	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.44207	3.737135	4.0322	0.00588589	1.3128e-5	0.0427941	3.44837e-4
chr1	52020219	52020308	1018053	0	-	0.494382	(0.49,0.53]	chr1	105390	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.35133	3.73698	4.12263	0.00591451	0.00150139	0.0427941	0.0152367
chr17	49827502	49827601	16260194	0	+	0.515152	(0.49,0.53]	chr17	1318079	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000435742.2:ENST00000513980.5:ENST00000512616.5:ENST00000503101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.35133	3.73698	4.12263	0.00591451	0.00150139	0.0427941	0.0152367
chr6	7283830	7283929	7586830	0	-	0.515152	(0.49,0.53]	chr6	578692	28	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.35133	3.73698	4.12263	0.00591451	0.00150139	0.0427941	0.0152367
chr6	33201345	33201422	7121271	0	+	0.558442	(0.53,0.59]	chr6	547377	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	3.02047	3.736905	4.45334	6.25942e-5	3.13332e-6	0.00124286	1.15746e-4
chr11	119054584	119054675	12626540	0	-	0.615385	(0.59,1]	chr11	979815	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5:ENST00000531694.5:ENST00000534233.5:ENST00000526656.5:ENST00000531968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	134	2	3.08707	3.7367800000000004	4.38649	8.79989e-4	5.2008e-7	0.0107294	2.29012e-5
chr15	63591217	63591314	14973973	0	+	0.42268	(0.42,0.455]	chr15	1176970	5	UTR3	UTR3:EXON_MRNA	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000559257.5:ENST00000538686.6:ENST00000560202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.92513	3.7365250000000003	4.54792	9.66045e-4	3.39829e-4	0.0115185	0.00479167
chr11	64321006	64321068	11980515	0	+	0.451613	(0.42,0.455]	chr11	919249	1	CDS	CDS:EXON_MRNA	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	3.68196	3.736495	3.79103	1.87505e-5	8.61353e-6	5.08634e-4	2.43348e-4
chr15	72210422	72210478	15368112	0	-	0.517857	(0.49,0.53]	chr15	1214161	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000562784.1:ENST00000564178.5:ENST00000562997.5:ENST00000567087.5:ENST00000564276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	3.05347	3.73639	4.41931	1.85938e-5	3.4941e-6	5.04972e-4	1.14163e-4
chr1	45012906	45012991	174322	0	+	0.552941	(0.53,0.59]	chr1	22533	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000650713.1:ENST00000651476.1:ENST00000463092.5:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000461035.5:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5:ENST00000490385.5:ENST00000460906.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000496439.1:ENST00000652514.1:ENST00000473012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	130	2	2.81114	3.736385	4.66163	2.70282e-5	1.08822e-8	6.89648e-4	8.34238e-7
chr17	81253072	81253156	16706889	0	-	0.654762	(0.59,1]	chr17	1377175	1	CDS	CDS:EXON_MRNA	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.1277	3.736285	4.34487	0.0123678	0.00490589	0.0705839	0.0366648
chr6	31690538	31690602	7661755	0	-	0.59375	(0.59,1]	chr6	584992	1	CDS	CDS:UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000475742.5:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000477016.5:ENST00000498420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.1277	3.736285	4.34487	0.0123678	0.00490589	0.0705839	0.0366648
chr7	101223672	101223757	8431125	0	+	0.670588	(0.59,1]	chr7	644161	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNHIT1	ENSG00000106400.12	ENST00000305105.3:ENST00000461205.5:ENST00000492315.5:ENST00000485387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	35	2	3.1277	3.736285	4.34487	0.0123678	0.00490589	0.0705839	0.0366648
chr8	30352065	30352162	9253453	0	+	0.597938	(0.59,1]	chr8	708964	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	35	2	3.1277	3.736285	4.34487	0.0123678	0.00490589	0.0705839	0.0366648
chr7	127807483	127807573	8516502	0	+	0.422222	(0.42,0.455]	chr7	649718	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	188	2	3.53113	3.736185	3.94124	4.28825e-8	6.59337e-9	2.98666e-6	5.39346e-7
chr5	131165105	131165205	6826854	0	-	0.51	(0.49,0.53]	chr5	522085	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000508495.5:ENST00000508488.2:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2:ENST00000504202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	253	2	3.66403	3.7361050000000002	3.80818	1.96402e-8	4.2454e-10	1.51544e-6	4.91095e-8
chr11	62533775	62533874	12408770	0	-	0.545455	(0.53,0.59]	chr11	960901	171	CDS	CDS:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.35511	3.73609	5.11707	0.0445399	1.35965e-4	0.172163	0.00231202
chr3	9964168	9964197	4031179	0	-	0.551724	(0.53,0.59]	chr3	338377	1	CDS	CDS:EXON_MRNA	EMC3	ENSG00000125037.12	ENST00000245046.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.35511	3.73609	5.11707	0.0445399	1.35965e-4	0.172163	0.00231202
chr6	88275881	88275973	7829494	0	-	0.586957	(0.53,0.59]	chr6	599904	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-459O1.2:ACTBP8	ENSG00000234426.3:ENSG00000220267.1	ENST00000648572.1:ENST00000403258.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	26	2	2.35511	3.73609	5.11707	0.0445399	1.35965e-4	0.172163	0.00231202
chrX	141907404	141907504	18883540	0	+	0.56	(0.53,0.59]	chrX	1608997	21	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.35511	3.73609	5.11707	0.0445399	1.35965e-4	0.172163	0.00231202
chr7	106263530	106263587	8978005	0	-	0.350877	(0.33,0.36]	chr7	687090	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000681631.1:ENST00000679717.1:ENST00000680516.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000681297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.27335	3.7360550000000003	5.19876	0.00837768	2.37278e-5	0.0541213	6.1689e-4
chr1	52027274	52027348	1018129	0	-	0.351351	(0.33,0.36]	chr1	105410	1	CDS	CDS:UTR3:EXON_MRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000648686.1:ENST00000472624.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	2.6254	3.73591	4.84642	0.00106803	1.14635e-7	0.0124232	6.29236e-6
chr20	2463157	2463227	17878946	0	-	0.614286	(0.59,1]	chr20	1512825	2	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	3.53648	3.7358700000000002	3.93526	0.00107706	1.599e-4	0.0124943	0.00263454
chr1	43975799	43975848	169357	0	+	0.469388	(0.455,0.49]	chr1	21837	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000472505.6:ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000461670.5:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498208.1:ENST00000532072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	3.65545	3.7358450000000003	3.81624	3.50134e-4	1.48205e-4	0.0049086	0.00269793
chr3	23919366	23919401	3358559	0	+	0.628571	(0.59,1]	chr3	294136	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	176	2	3.62918	3.735845	3.84251	1.16529e-5	2.55776e-6	3.432e-4	8.84046e-5
chr20	32149633	32149699	17752466	0	+	0.621212	(0.59,1]	chr20	1498498	1	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.61023	3.73581	3.86139	7.25496e-4	2.54973e-4	0.00869086	0.00417441
chr6	7298746	7298823	7586990	0	-	0.38961	(0.36,0.39]	chr6	578722	1	CDS	CDS:EXON_MRNA	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5:ENST00000462112.1	protein_coding	protein_coding	protein_coding	protein_coding	10	159	2	2.92197	3.73578	4.54959	1.60658e-4	4.96925e-12	0.00287058	9.3677e-10
chr7	107759078	107759178	8457138	0	+	0.52	(0.49,0.53]	chr7	646251	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.51981	3.7357050000000003	3.9516	6.88328e-4	6.96459e-5	0.00876781	0.0013446
chr15	41380762	41380858	14886255	0	+	0.3125	(0.29,0.33]	chr15	1169383	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	115	2	3.31586	3.73568	4.1555	1.62041e-5	2.92278e-10	4.51701e-4	3.52717e-8
chr2	112663225	112663325	2001923	0	+	0.45	(0.42,0.455]	chr2	190058	3	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	3.37962	3.735585	4.09155	1.2947e-4	2.98142e-5	0.00242147	6.7355e-4
chr2	173955843	173955940	3020162	0	-	0.402062	(0.39,0.42]	chr2	267378	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	47	2	3.66467	3.73545	3.80623	3.60066e-4	7.67155e-6	0.00544157	2.20857e-4
chr2	85320687	85320786	2770117	0	-	0.50505	(0.49,0.53]	chr2	245643	28	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	3.43991	3.735125	4.03034	8.40266e-5	4.26396e-5	0.00158427	9.97006e-4
chr1	161447190	161447290	1333668	0	-	0.65	(0.59,1]	chr1	136938	63	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	291	8150	2	3.44147	3.734825	4.02818	3.60627e-9	5.07796e-11	3.20469e-7	8.16041e-9
chr7	92117043	92117127	8922135	0	-	0.47619	(0.455,0.49]	chr7	680637	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1:ENST00000482924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	82	2	2.63872	3.734785	4.83085	0.00510378	1.60357e-9	0.0390492	1.59982e-7
chr13	27435497	27435597	13658071	0	+	0.47	(0.455,0.49]	chr13	1076494	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GTF3A	ENSG00000122034.17	ENST00000381140.10:ENST00000419181.5:ENST00000470606.5:ENST00000482655.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.40664	3.73473	5.06282	0.0123662	1.16789e-4	0.0705839	0.0020505
chr17	59193491	59193572	16292833	0	+	0.45679	(0.455,0.49]	chr17	1321345	1	CDS	CDS:EXON_MRNA	PRR11	ENSG00000068489.13	ENST00000578777.5:ENST00000262293.9:ENST00000578542.5:ENST00000580177.5:ENST00000614081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.40664	3.73473	5.06282	0.0123662	1.16789e-4	0.0705839	0.0020505
chr19	1011095	1011195	17417293	0	-	0.53	(0.49,0.53]	chr19	1452051	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM259	ENSG00000182087.14	ENST00000593068.7:ENST00000592590.6:ENST00000333175.9:ENST00000592618.5:ENST00000356663.8:ENST00000586704.5:ENST00000592052.1:ENST00000586285.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	2.4432	3.73472	5.02624	8.82833e-4	3.25781e-8	0.0107603	2.14209e-6
chr21	44866346	44866445	18277586	0	-	0.494949	(0.49,0.53]	chr21	1550285	3	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	3.01617	3.7346999999999997	4.45323	8.62231e-4	2.6067e-6	0.0100487	9.88864e-5
chr1	236537496	236537585	769655	0	+	0.494382	(0.49,0.53]	chr1	77574	1	CDS	CDS:EXON_MRNA:INTRON	LGALS8	ENSG00000116977.19	ENST00000481485.5:ENST00000454943.6:ENST00000527974.5:ENST00000430527.6:ENST00000352231.6:ENST00000406509.7:ENST00000526589.5:ENST00000529489.5:ENST00000450372.6:ENST00000416919.6:ENST00000341872.10:ENST00000238181.11:ENST00000366584.9:ENST00000528782.5:ENST00000532826.5:ENST00000366583.6:ENST00000442397.6:ENST00000434231.6:ENST00000323938.10:ENST00000526634.5:ENST00000525042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.78962	3.73467	4.67972	0.0129044	6.94757e-4	0.0725185	0.00876781
chr4	87137381	87137480	4941144	0	+	0.50505	(0.49,0.53]	chr4	405799	18	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.78962	3.73467	4.67972	0.0129044	6.94757e-4	0.0725185	0.00876781
chr5	159157990	159158087	6941915	0	-	0.494845	(0.49,0.53]	chr5	531547	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF145	ENSG00000145860.12	ENST00000424310.7:ENST00000519865.5:ENST00000274542.6:ENST00000518284.1:ENST00000611185.4:ENST00000519985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.78962	3.73467	4.67972	0.0129044	6.94757e-4	0.0725185	0.00876781
chrX	66162807	66162876	18717226	0	+	0.492754	(0.49,0.53]	chrX	1596922	3	UTR5	UTR5:EXON_MRNA	HEPH	ENSG00000089472.17	ENST00000519389.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.78962	3.73467	4.67972	0.0129044	6.94757e-4	0.0725185	0.00876781
chr11	82825063	82825122	12499094	0	-	0.491525	(0.49,0.53]	chr11	971419	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRCP	ENSG00000137509.12	ENST00000313010.8:ENST00000680566.1:ENST00000531801.6:ENST00000679387.1:ENST00000681637.1:ENST00000679623.1:ENST00000532809.2:ENST00000681322.1:ENST00000681155.1:ENST00000680437.1:ENST00000681781.1:ENST00000534264.2:ENST00000681826.1:ENST00000681592.1:ENST00000526918.6:ENST00000680186.1:ENST00000679809.1:ENST00000681432.1:ENST00000680040.1:ENST00000681883.1:ENST00000525772.6:ENST00000680524.1:ENST00000623464.1:ENST00000393399.6:ENST00000532709.5:ENST00000681508.1:ENST00000528082.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	1	22	2	3.04107	3.7344850000000003	4.4279	0.00533879	0.00196987	0.0392268	0.0193972
chr20	50583589	50583686	17816218	0	+	0.505155	(0.49,0.53]	chr20	1507152	10	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.04107	3.7344850000000003	4.4279	0.00533879	0.00196987	0.0392268	0.0193972
chr12	31981545	31981643	12816021	0	+	0.418367	(0.39,0.42]	chr12	995186	6	CDS	CDS:EXON_MRNA:INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	1.94226	3.73426	5.52626	0.01151	7.67816e-6	0.0679423	2.20857e-4
chrX	119469952	119470049	18841517	0	+	0.515464	(0.49,0.53]	chrX	1605559	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9:ENST00000460013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	152	2	3.24093	3.7341100000000003	4.22729	8.71832e-7	3.69312e-9	3.9493e-5	3.27603e-7
chr1	230837996	230838094	1546525	0	-	0.479592	(0.455,0.49]	chr1	154853	10	UTR3	UTR3:EXON_MRNA	C1orf198	ENSG00000119280.17	ENST00000470540.5:ENST00000366663.10:ENST00000427697.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.65545	3.7340999999999998	3.81275	0.0138827	3.50134e-4	0.0760883	0.0049086
chr22	43169499	43169568	18527881	0	-	0.521739	(0.49,0.53]	chr22	1582347	1	CDS	CDS:UTR5:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484711.1:ENST00000494035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.52637	3.73407	3.94177	0.0104929	6.68602e-4	0.063428	0.00820018
chr1	168236588	168236624	526430	0	+	0.444444	(0.42,0.455]	chr1	56522	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D2	ENSG00000213064.10	ENST00000471981.1:ENST00000367829.5:ENST00000271375.7:ENST00000630869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.66697	3.733805	4.80064	0.0190326	3.0479e-4	0.0958835	0.00472028
chr1	215604216	215604302	713833	0	+	0.430233	(0.42,0.455]	chr1	72112	2	CDS	CDS:EXON_MRNA	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000452413.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.66697	3.733805	4.80064	0.0190326	3.0479e-4	0.0958835	0.00472028
chr3	45003871	45003967	3446224	0	+	0.427083	(0.42,0.455]	chr3	300142	18	INTRON	INTRON	EXOSC7:CLEC3B	ENSG00000075914.13:ENSG00000163815.6	ENST00000461361.5:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1:ENST00000490386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.66697	3.733805	4.80064	0.0190326	3.0479e-4	0.0958835	0.00472028
chr1	150511117	150511198	468335	0	+	0.54321	(0.53,0.59]	chr1	47400	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000498579.5:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	3.30943	3.73374	4.15805	0.00680952	0.0018255	0.0468196	0.0183913
chr16	16068155	16068228	15567998	0	+	0.547945	(0.53,0.59]	chr16	1232739	1	CDS	CDS:EXON_MRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.46349	3.7337100000000003	4.00393	0.0108084	9.2216e-4	0.064368	0.0104432
chr8	11844927	11845025	9699205	0	-	0.530612	(0.53,0.59]	chr8	734804	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	3.46349	3.7337100000000003	4.00393	0.0108084	9.2216e-4	0.064368	0.0104432
chr11	4083340	4083419	11773897	0	+	0.582278	(0.53,0.59]	chr11	900891	2	CDS	CDS:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000533977.5:ENST00000533343.1:ENST00000531332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.515	3.7336650000000002	4.95233	0.0292633	3.02711e-4	0.129773	0.00439897
chr6	153282464	153282554	8031077	0	-	0.466667	(0.455,0.49]	chr6	614220	3	EXON_PSEUDO	EXON_PSEUDO	RP11-475C16.1	ENSG00000218426.5	ENST00000492974.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	252	2	3.47832	3.7335450000000003	3.98877	2.48241e-8	9.44251e-11	1.84654e-6	1.29392e-8
chr7	130173881	130173939	9063221	0	-	0.413793	(0.39,0.42]	chr7	692149	2	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	3.5819	3.733505	3.88511	4.76776e-6	1.00889e-6	1.64158e-4	4.0236e-5
chr11	3683271	3683371	12237792	0	-	0.51	(0.49,0.53]	chr11	945503	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000524563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.72252	3.7334499999999995	4.74438	0.0161474	5.91752e-4	0.0860154	0.00743488
chr14	102010275	102010367	14495436	0	+	0.5	(0.49,0.53]	chr14	1133090	1	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.72252	3.7334499999999995	4.74438	0.0161474	5.91752e-4	0.0860154	0.00743488
chr16	11351275	11351372	15543388	0	+	0.525773	(0.49,0.53]	chr16	1231099	6	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000576027.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.72252	3.7334499999999995	4.74438	0.0161474	5.91752e-4	0.0860154	0.00743488
chr7	114385713	114385813	8467574	0	+	0.48	(0.455,0.49]	chr7	646864	187	INTRON	INTRON	FOXP2	ENSG00000128573.26	ENST00000412402.5:ENST00000440349.5:ENST00000441290.6:ENST00000635638.1:ENST00000495516.1:ENST00000634411.1:ENST00000635109.1:ENST00000634623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	279	2	2.63302	3.733235	4.83345	9.16415e-6	1e-12	2.82281e-4	2.25522e-10
chr5	80650672	80650770	6667602	0	-	0.428571	(0.42,0.455]	chr5	514741	7	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	189	2	2.80516	3.73323	4.6613	2.15543e-6	4.678e-11	8.41043e-5	6.91555e-9
chr17	28719984	28720005	16177250	0	+	0.428571	(0.42,0.455]	chr17	1305473	1	UTR5	UTR5:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	564	2	3.29344	3.7332	4.17296	2.05081e-9	1e-12	2.13842e-7	2.25522e-10
chr7	97856752	97856816	8940659	0	-	0.40625	(0.39,0.42]	chr7	682253	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	68	2	2.95786	3.7331950000000003	4.50853	0.00138212	2.9478e-8	0.0149186	1.96491e-6
chr11	62634309	62634375	12409808	0	-	0.393939	(0.39,0.42]	chr11	961302	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534422.5:ENST00000534613.5:ENST00000525994.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	123	2	2.9483	3.7329600000000003	4.51762	1.18306e-4	1.81786e-10	0.00224891	2.30542e-8
chr17	66808474	66808573	16326803	0	+	0.474747	(0.455,0.49]	chr17	1324591	46	UTR3	UTR3:EXON_MRNA	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.3605	3.732925	4.10535	0.0064531	0.00147278	0.0450905	0.0157578
chr5	134199085	134199144	6844126	0	-	0.372881	(0.36,0.39]	chr5	523673	1	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000472253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.63521	3.732865	4.83052	0.00633242	3.15227e-4	0.0446708	0.00452711
chr1	38016358	38016420	142994	0	+	0.451613	(0.42,0.455]	chr1	17914	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP11	ENSG00000183520.12	ENST00000483182.5:ENST00000373014.5:ENST00000486563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.06293	3.732845	4.40276	0.00492128	0.0017618	0.0366648	0.0180053
chr6	52278741	52278795	7736742	0	-	0.425926	(0.42,0.455]	chr6	593741	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.06293	3.732845	4.40276	0.00492128	0.0017618	0.0366648	0.0180053
chr7	99892162	99892262	8948965	0	-	0.44	(0.42,0.455]	chr7	683377	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	TRIM4	ENSG00000146833.16	ENST00000447480.5:ENST00000349062.7:ENST00000355947.6	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.06293	3.732845	4.40276	0.00492128	0.0017618	0.0366648	0.0180053
chr4	82844377	82844477	5496684	0	-	0.5	(0.49,0.53]	chr4	440200	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000508479.5	protein_coding	protein_coding	protein_coding	protein_coding	18	229	2	3.44694	3.732665	4.01839	2.32961e-8	5.0103e-9	1.75096e-6	4.24891e-7
chr1	161461976	161462076	1333816	0	-	0.66	(0.59,1]	chr1	136938	211	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	284	8030	2	3.27253	3.73262	4.19271	1.3634e-8	1.40199e-11	1.01421e-6	2.57327e-9
chr1	181090663	181090761	587438	0	+	0.408163	(0.39,0.42]	chr1	60876	9	UTR3	UTR3:EXON_MRNA	IER5	ENSG00000162783.11	ENST00000367577.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.69374	3.7324	4.77106	0.00386013	3.03764e-4	0.0310764	0.00472028
chr7	135573739	135573825	8552550	0	+	0.406977	(0.39,0.42]	chr7	652691	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000489493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.69374	3.7324	4.77106	0.00386013	3.03764e-4	0.0310764	0.00472028
chr19	40605728	40605779	17330260	0	+	0.784314	(0.59,1]	chr19	1435952	1	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	2.42639	3.7323649999999997	5.03834	0.0409084	0.00108238	0.163285	0.0118355
chr19	45695436	45695534	17354354	0	+	0.632653	(0.59,1]	chr19	1440103	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	QPCTL	ENSG00000011478.13	ENST00000678102.1:ENST00000677542.1:ENST00000677024.1:ENST00000012049.10:ENST00000678862.1:ENST00000366382.8:ENST00000591606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.42639	3.7323649999999997	5.03834	0.0409084	0.00108238	0.163285	0.0118355
chr10	97744754	97744854	11214467	0	+	0.6	(0.59,1]	chr10	853238	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.9228	3.732315	4.54183	0.00981698	0.0070583	0.0612992	0.0478044
chr1	150559097	150559165	468516	0	+	0.676471	(0.59,1]	chr1	47494	3	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	3.17616	3.7322949999999997	4.28843	0.00434232	2.52144e-5	0.0339139	5.85193e-4
chr5	96800933	96800960	6721367	0	-	0.481481	(0.455,0.49]	chr5	517478	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5:ENST00000508227.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.46389	3.73229	4.00069	9.14164e-4	5.13615e-5	0.0110519	0.00104999
chr8	47782450	47782524	9815559	0	-	0.648649	(0.59,1]	chr8	742489	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5:ENST00000432581.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.59461	3.73219	4.86977	0.0259455	0.00246014	0.117079	0.0230058
chr6	83168936	83169035	7817211	0	-	0.353535	(0.33,0.36]	chr6	598698	26	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PGM3	ENSG00000013375.16	ENST00000504780.5:ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.49939	3.73213	4.96487	6.86704e-4	9.26851e-5	0.00839272	0.00185187
chr17	16027819	16027918	16140231	0	+	0.484848	(0.455,0.49]	chr17	1300541	4	UTR3	UTR3:EXON_MRNA:INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000481107.1:ENST00000465567.1:ENST00000470649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.69053	3.731855	4.77318	0.0182983	4.7888e-4	0.0925808	0.00628636
chrX	30218870	30218965	18640660	0	+	0.473684	(0.455,0.49]	chrX	1590509	3	CDS	CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.69053	3.731855	4.77318	0.0182983	4.7888e-4	0.0925808	0.00628636
chr4	56451961	56452052	4848647	0	+	0.406593	(0.39,0.42]	chr4	399459	2	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	12	161	2	3.40231	3.731675	4.06104	1.3842e-6	3.8363e-10	5.78474e-5	4.49133e-8
chr7	852880	852952	8093693	0	+	0.583333	(0.53,0.59]	chr7	618437	2	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000464442.5:ENST00000457861.1:ENST00000459810.1:ENST00000475971.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	3.02054	3.7315449999999997	4.44255	0.00577011	3.41603e-6	0.0426551	1.12474e-4
chr12	111510384	111510483	13540438	0	-	0.50505	(0.49,0.53]	chr12	1065322	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000645162.1:ENST00000644883.1:ENST00000647305.1:ENST00000546483.1:ENST00000550236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.21702	3.7314050000000005	5.24579	0.00959574	4.073e-5	0.0603269	9.64741e-4
chr8	144396839	144396929	10148649	0	-	0.555556	(0.53,0.59]	chr8	763593	1	CDS	CDS:EXON_MRNA:INTRON	CPSF1	ENSG00000071894.17	ENST00000616140.2:ENST00000620219.4:ENST00000531042.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.88327	3.7312900000000004	5.57931	0.0298124	1.05602e-5	0.129773	2.89015e-4
chr1	151265537	151265609	471376	0	+	0.541667	(0.53,0.59]	chr1	48098	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5:ENST00000445776.1:ENST00000491857.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	3.29875	3.73129	4.16383	0.00659193	0.00191422	0.0454205	0.018324
chr11	44618161	44618229	11928244	0	+	0.558824	(0.53,0.59]	chr11	911706	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CD82	ENSG00000085117.12	ENST00000342935.7:ENST00000529277.5:ENST00000227155.9:ENST00000525898.5:ENST00000530601.1:ENST00000530931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	3.29875	3.73129	4.16383	0.00659193	0.00191422	0.0454205	0.018324
chrX	42099005	42099089	19051817	0	-	0.547619	(0.53,0.59]	chrX	1619238	4	EXON_PSEUDO	EXON_PSEUDO	ATP5MC2P4	ENSG00000228847.1	ENST00000442175.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	25	2	3.29875	3.73129	4.16383	0.00659193	0.00191422	0.0454205	0.018324
chr3	47427519	47427593	4160830	0	-	0.567568	(0.53,0.59]	chr3	348170	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.90978	3.73126	4.55274	0.00857883	0.00167999	0.0552386	0.0164993
chr3	127605072	127605156	3723429	0	+	0.571429	(0.53,0.59]	chr3	318238	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000468659.1:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.90978	3.73126	4.55274	0.00857883	0.00167999	0.0552386	0.0164993
chr18	31545720	31545812	16809156	0	+	0.434783	(0.42,0.455]	chr18	1386480	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.71365	3.7311199999999998	3.74859	2.63375e-4	1.15347e-5	0.00427022	3.09736e-4
chr9	107306378	107306467	10410300	0	+	0.561798	(0.53,0.59]	chr9	783995	1	CDS	CDS:EXON_MRNA	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	3.47239	3.7310049999999997	3.98962	2.29235e-6	8.65796e-7	8.86852e-5	3.53908e-5
chr6	27837879	27837946	7649619	0	-	0.492537	(0.49,0.53]	chr6	582814	1	UTR3	UTR3:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.87508	3.7309150000000004	4.58675	4.55699e-4	1.05095e-6	0.00645757	4.17035e-5
chr8	123346085	123346178	10057133	0	-	0.365591	(0.36,0.39]	chr8	756639	1	CDS	CDS:UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.63115	3.730835	4.83052	0.0245975	3.15227e-4	0.114841	0.00452711
chrX	21553397	21553497	18607638	0	+	0.39	(0.36,0.39]	chrX	1589185	141	INTRON	INTRON	CNKSR2	ENSG00000149970.16	ENST00000642501.1:ENST00000642359.1:ENST00000645038.1:ENST00000425654.7:ENST00000379510.5:ENST00000543067.6:ENST00000643171.1:ENST00000279451.9:ENST00000645245.1:ENST00000644585.1:ENST00000644295.1:ENST00000645074.1:ENST00000645791.1:ENST00000644095.1:ENST00000643220.1:ENST00000485012.2:ENST00000647532.1:ENST00000647423.1:ENST00000646697.1:ENST00000643313.1:ENST00000644075.1:ENST00000647349.1:ENST00000643156.1:ENST00000642853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.63115	3.730835	4.83052	0.0245975	3.15227e-4	0.114841	0.00452711
chr5	111110870	111110953	6144539	0	+	0.349398	(0.33,0.36]	chr5	480209	2	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.93884	3.73075	4.52266	0.00135211	8.34989e-4	0.0140654	0.0102956
chrX	73827288	73827387	19113541	0	-	0.383838	(0.36,0.39]	chrX	1626115	57	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1	lncRNA	lncRNA	lncRNA	lncRNA	19	196	2	3.15664	3.7306999999999997	4.30476	1.33337e-7	1.47643e-11	7.17442e-6	2.69333e-9
chrY	18615506	18615605	19360792	0	-	0.444444	(0.42,0.455]	chrY	1647418	57	INTRON	INTRON	OFD1P5Y	ENSG00000240438.2	ENST00000447585.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	48	712	2	2.66801	3.730645	4.79328	5.3235e-7	1e-12	2.60406e-5	2.25522e-10
chr19	582749	582838	17188339	0	+	0.629214	(0.59,1]	chr19	1410790	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	441	2	2.81151	3.730445	4.64938	3.54543e-5	2.18251e-10	8.64415e-4	2.71845e-8
chr10	75229643	75229701	11126599	0	+	0.448276	(0.42,0.455]	chr10	846670	1	CDS	CDS:EXON_MRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000332211.10:ENST00000313132.8:ENST00000460044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	3.4401	3.7304150000000003	4.02073	1.58973e-6	9.72702e-7	6.493e-5	3.90471e-5
chr1	27823578	27823674	114570	0	+	0.302083	(0.29,0.33]	chr1	13910	14	UTR3	UTR3:EXON_MRNA	STX12	ENSG00000117758.14	ENST00000373943.9	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.24226	3.73031	5.21836	0.0306054	3.15783e-5	0.130226	7.02218e-4
chr1	149860975	149861031	1287084	0	-	0.607143	(0.59,1]	chr1	127848	2	CDS	CDS:EXON_MRNA	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	157	2	3.48457	3.7302150000000003	3.97586	1.16515e-4	1.34487e-6	0.0020505	5.6532e-5
chr16	56439656	56439746	15959755	0	-	0.466667	(0.455,0.49]	chr16	1279991	1	CDS	CDS:UTR3:EXON_MRNA	NUDT21:RP11-413H22.3	ENSG00000167005.14:ENSG00000288725.1	ENST00000300291.10:ENST00000684388.1:ENST00000566340.5:ENST00000563362.1:ENST00000568822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	3.43961	3.7300050000000002	4.0204	0.00736097	8.42878e-5	0.0490627	0.0015859
chr11	9445682	9445780	11792893	0	+	0.306122	(0.29,0.33]	chr11	902941	6	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	11	102	2	3.27759	3.72979	4.18199	1.14075e-6	4.22045e-9	4.91686e-5	3.68109e-7
chr4	56461218	56461316	4848742	0	+	0.326531	(0.29,0.33]	chr4	399473	18	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	11	86	2	2.8215	3.72975	4.638	8.61126e-6	1.208e-8	2.43348e-4	9.99282e-7
chr12	50988324	50988424	13330005	0	-	0.5	(0.49,0.53]	chr12	1046719	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.72252	3.72964	4.73676	0.0161474	3.38109e-7	0.0860154	1.5857e-5
chr2	171554549	171554649	2207396	0	+	0.5	(0.49,0.53]	chr2	202000	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000321348.9:ENST00000375252.3:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.72252	3.72964	4.73676	0.0161474	3.38109e-7	0.0860154	1.5857e-5
chr19	38309275	38309328	17559417	0	-	0.490566	(0.49,0.53]	chr19	1474579	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1:ENST00000587361.1:ENST00000587039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	50	2	3.49143	3.7295	3.96757	6.21316e-5	6.13943e-5	0.00134149	0.00122382
chr1	182384206	182384305	1401218	0	-	0.383838	(0.36,0.39]	chr1	141690	63	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	379	2	2.98982	3.72927	4.46872	2.79972e-8	1e-12	2.05332e-6	2.25522e-10
chr13	46127590	46127690	14009616	0	-	0.51	(0.49,0.53]	chr13	1098489	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.14975	3.729265	4.30878	8.97896e-5	7.12421e-6	0.0016645	2.28404e-4
chr6	31539146	31539210	7661170	0	-	0.546875	(0.53,0.59]	chr6	584711	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.2596	3.729215	5.19883	0.0185443	8.7034e-5	0.0948733	0.00177086
chr1	11285934	11286031	42472	0	+	0.57732000000000006	(0.53,0.59]	chr1	5109	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	UBIAD1	ENSG00000120942.14	ENST00000376810.6:ENST00000376804.2:ENST00000486588.6:ENST00000483738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.78899	3.729175	4.66936	0.00245784	0.00103174	0.0221765	0.0121443
chr16	16045924	16046013	15567771	0	+	0.550562	(0.53,0.59]	chr16	1232713	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.78899	3.729175	4.66936	0.00245784	0.00103174	0.0221765	0.0121443
chr20	34290550	34290638	17946766	0	-	0.545455	(0.53,0.59]	chr20	1519969	1	CDS	CDS:EXON_MRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.78899	3.729175	4.66936	0.00245784	0.00103174	0.0221765	0.0121443
chr2	33056420	33056509	2590967	0	-	0.505618	(0.49,0.53]	chr2	233245	2	EXON_PSEUDO	EXON_PSEUDO	H2ACP2	ENSG00000223951.1	ENST00000456007.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	40	2	3.33324	3.72907	4.1249	0.00162947	2.4461e-5	0.0169972	5.72214e-4
chr2	26135994	26136091	1685710	0	+	0.412371	(0.39,0.42]	chr2	164739	11	UTR3	UTR3:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	2.66975	3.7290650000000003	4.78838	1.22088e-4	1.7675e-7	0.00212239	1.03066e-5
chr4	87435123	87435220	4941337	0	+	0.536082	(0.53,0.59]	chr4	405817	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUDT9	ENSG00000170502.13	ENST00000302174.9:ENST00000512216.5:ENST00000514345.1:ENST00000473942.5:ENST00000440591.6:ENST00000502933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.89916	3.72888	4.5586	0.00890406	0.00161229	0.0565003	0.0169168
chr12	6969497	6969577	13188906	0	-	0.5125	(0.49,0.53]	chr12	1032811	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	70	2	3.16986	3.728835	4.28781	3.95698e-4	2.05323e-7	0.00587341	1.04036e-5
chr17	64502921	64503021	16639747	0	-	0.36	(0.33,0.36]	chr17	1368495	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000579996.5:ENST00000577787.1:ENST00000584549.1:ENST00000581551.1:ENST00000583201.5:ENST00000583894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	2.79176	3.728485	4.66521	4.19475e-4	6.26468e-9	0.00611538	5.16133e-7
chr6	166943074	166943089	8083369	0	-	0.4	(0.39,0.42]	chr6	616967	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000509073.1:ENST00000684086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.51636	3.72816	3.93996	0.00841622	6.99837e-4	0.054565	0.00846751
chrX	30854307	30854404	19012417	0	-	0.412371	(0.39,0.42]	chrX	1617576	3	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.51636	3.72816	3.93996	0.00841622	6.99837e-4	0.054565	0.00846751
chr16	28833438	28833508	15620359	0	+	0.414286	(0.39,0.42]	chr16	1238455	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	10	123	2	3.59474	3.7280749999999996	3.86141	5.68955e-7	3.78165e-8	2.74392e-5	2.43243e-6
chr19	14621894	14621981	17481472	0	-	0.436782	(0.42,0.455]	chr19	1464658	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADGRE3:ITGB1P1	ENSG00000131355.15:ENSG00000269378.1	ENST00000344373.8:ENST00000443157.6:ENST00000253673.6:ENST00000599900.5:ENST00000596032.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	62	2	3.05889	3.7278249999999997	4.39676	0.00524205	8.14648e-8	0.0399155	4.6939e-6
chr17	50382014	50382112	16585113	0	-	0.44898	(0.42,0.455]	chr17	1363112	9	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	3.03147	3.7277250000000004	4.42398	2.02875e-4	6.46919e-8	0.0034429	3.85085e-6
chr14	23034647	23034747	14528851	0	-	0.58	(0.53,0.59]	chr14	1138396	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	3.47419	3.72767	3.98115	8.75273e-4	6.28226e-5	0.0106963	0.00124286
chr19	7963657	7963732	17447947	0	-	0.573333	(0.53,0.59]	chr19	1458191	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	3.47419	3.72767	3.98115	8.75273e-4	6.28226e-5	0.0106963	0.00124286
chr3	13316908	13317005	4046190	0	-	0.505155	(0.49,0.53]	chr3	339510	8	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.25637	3.7276	5.19883	0.00420813	6.30063e-5	0.0329484	0.00124286
chr18	36174541	36174641	16825358	0	+	0.43	(0.42,0.455]	chr18	1387673	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5:ENST00000536830.1:ENST00000544274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.59462	3.7275	4.86038	0.0062772	3.34791e-4	0.0445415	0.00472923
chr12	98600040	98600127	13036962	0	+	0.45977	(0.455,0.49]	chr12	1015016	2	CDS	CDS:UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	99	2	3.23859	3.72741	4.21623	1.41582e-5	2.67302e-8	4.01358e-4	1.80486e-6
chr12	98597855	98597947	13036937	0	+	0.467391	(0.455,0.49]	chr12	1015005	1	CDS	CDS:UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1:ENST00000547444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	137	2	3.61899	3.727295	3.8356	7.30786e-7	1.00756e-8	3.41098e-5	7.80808e-7
chrX	77899439	77899496	18744857	0	+	0.45614	(0.455,0.49]	chrX	1599618	1	UTR5	UTR5:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.65079	3.727195	3.8036	3.61776e-4	1.59194e-4	0.00544764	0.00263091
chr4	128272457	128272517	5639372	0	-	0.533333	(0.53,0.59]	chr4	449288	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	76	2	2.38191	3.72717	5.07243	0.00477439	2.94063e-8	0.0368489	1.96201e-6
chr10	46009480	46009551	11470963	0	-	0.464789	(0.455,0.49]	chr10	874837	2	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	3.719	3.72714	3.73528	1.42274e-5	1.49591e-6	4.02509e-4	5.62205e-5
chr14	55051724	55051803	14297909	0	+	0.670886	(0.59,1]	chr14	1117525	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.4666	3.727055	3.98751	0.0301044	0.00133574	0.129773	0.0139317
chr7	107940265	107940358	8987384	0	-	0.623656	(0.59,1]	chr7	687609	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000678310.1:ENST00000468999.2:ENST00000474380.2:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	3.4666	3.727055	3.98751	0.0301044	0.00133574	0.129773	0.0139317
chr20	4010050	4010150	17884034	0	-	0.46	(0.455,0.49]	chr20	1513755	353	INTRON	INTRON	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.69344	3.72696	4.76048	0.0176068	3.99985e-4	0.0925619	0.00588767
chr3	155829687	155829759	4538128	0	-	0.458333	(0.455,0.49]	chr3	375996	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.69344	3.72696	4.76048	0.0176068	3.99985e-4	0.0925619	0.00588767
chr1	153992064	153992093	479598	0	+	0.482759	(0.455,0.49]	chr1	49577	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000643794.1:ENST00000493224.5:ENST00000477151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	2.77609	3.726885	4.67768	2.98403e-4	6.67496e-9	0.00471684	5.4538e-7
chr5	75343852	75343908	6036975	0	+	0.375	(0.36,0.39]	chr5	473595	1	CDS	CDS:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000509431.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	2.58765	3.72684	4.86603	8.39697e-4	1.68962e-4	0.00981548	0.00297945
chr5	56882067	56882167	5977922	0	+	0.43	(0.42,0.455]	chr5	468808	6	CDS	CDS:EXON_MRNA	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.05889	3.726785	4.39468	0.00524205	0.00240483	0.0399155	0.0217482
chr1	12006615	12006693	45819	0	+	0.538462	(0.53,0.59]	chr1	5917	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.7898	3.7266399999999997	4.66348	0.0128364	0.00107799	0.0719798	0.0118238
chr6	26598645	26598744	7102918	0	+	0.545455	(0.53,0.59]	chr6	543235	1	UTR3	UTR3:EXON_MRNA	ABT1	ENSG00000146109.5	ENST00000274849.3	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.7898	3.7266399999999997	4.66348	0.0128364	0.00107799	0.0719798	0.0118238
chr1	231365227	231365326	1548252	0	-	0.313131	(0.29,0.33]	chr1	155129	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	3.20367	3.7264999999999997	4.24933	6.11481e-4	1.02924e-5	0.00818575	2.83837e-4
chr11	14504954	14505033	12282051	0	-	0.278481	[0,0.29]	chr11	949694	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	100	2	3.48849	3.726435	3.96438	5.8293e-6	2.14875e-9	1.92382e-4	2.0533e-7
chr2	24707416	24707510	1681690	0	+	0.478723	(0.455,0.49]	chr2	164394	10	CDS	CDS:EXON_MRNA	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.08961	3.7263399999999995	4.36307	0.00445157	0.00218641	0.0340751	0.0208941
chr2	178432196	178432254	3039710	0	-	0.482759	(0.455,0.49]	chr2	268859	1	CDS	CDS:UTR3:EXON_MRNA	PRKRA	ENSG00000180228.14	ENST00000677859.1:ENST00000325748.9:ENST00000490501.5:ENST00000678775.1:ENST00000677689.1:ENST00000676922.1:ENST00000676832.1:ENST00000677584.1:ENST00000678053.1:ENST00000679037.1:ENST00000678845.1:ENST00000677981.1:ENST00000677206.1:ENST00000676505.1:ENST00000448279.2:ENST00000676586.1:ENST00000474793.6:ENST00000677136.1:ENST00000677386.1:ENST00000677460.1:ENST00000678167.1:ENST00000677253.1:ENST00000457633.2:ENST00000678058.1:ENST00000679202.1:ENST00000676752.1:ENST00000424699.5:ENST00000487082.5:ENST00000432031.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.08961	3.7263399999999995	4.36307	0.00445157	0.00218641	0.0340751	0.0208941
chr20	32825927	32826027	17755626	0	+	0.46	(0.455,0.49]	chr20	1498924	1	CDS_START	CDS_START:CDS:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.08961	3.7263399999999995	4.36307	0.00445157	0.00218641	0.0340751	0.0208941
chr3	187076097	187076195	3960066	0	+	0.469388	(0.455,0.49]	chr3	334036	4	UTR3	UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.08961	3.7263399999999995	4.36307	0.00445157	0.00218641	0.0340751	0.0208941
chr19	18900380	18900449	17501148	0	-	0.623188	(0.59,1]	chr19	1468458	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000595984.5:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	3.0542	3.7261349999999998	4.39807	0.00663549	1.36238e-5	0.0456243	3.54656e-4
chr12	120461931	120462018	13580771	0	-	0.356322	(0.33,0.36]	chr12	1069056	4	UTR3	UTR3:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000548326.1:ENST00000548792.1:ENST00000603963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	3.08133	3.7261100000000003	4.37089	4.29339e-5	5.4707e-6	9.09187e-4	1.82072e-4
chr12	110342300	110342374	13085865	0	+	0.581081	(0.53,0.59]	chr12	1020532	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	3.47419	3.72605	3.97791	8.75273e-4	2.51849e-6	0.0106963	8.73415e-5
chr2	26190985	26191073	2565635	0	-	0.522727	(0.49,0.53]	chr2	230525	5	UTR3	UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	59	2	3.19483	3.726025	4.25722	6.77168e-5	1.00699e-5	0.0013157	3.03291e-4
chr12	53669244	53669341	13341006	0	-	0.556701	(0.53,0.59]	chr12	1049275	2	CDS	CDS:UTR5:EXON_MRNA	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2:ENST00000552120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	259	2	3.33415	3.7259100000000003	4.11767	6.04772e-8	1.0002e-9	3.63345e-6	1.14348e-7
chr12	110327645	110327738	13085708	0	+	0.44086	(0.42,0.455]	chr12	1020497	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547050.1:ENST00000549840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	129	2	2.56101	3.7258699999999996	4.89073	4.9746e-4	4.13883e-11	0.00697309	6.22399e-9
chr6	143502494	143502565	8005312	0	-	0.549296	(0.53,0.59]	chr6	611757	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.7898	3.7258649999999998	4.66193	0.0128364	7.20737e-7	0.0719798	3.019e-5
chr1	42177727	42177826	964185	0	-	0.454545	(0.42,0.455]	chr1	101503	13	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.61323	3.7251000000000003	3.83697	2.83914e-5	6.30836e-6	6.46853e-4	2.05914e-4
chr1	149884931	149885026	1287092	0	-	0.410526	(0.39,0.42]	chr1	127851	6	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	5	74	2	2.91508	3.72492	4.53476	4.41174e-4	2.33863e-8	0.0062930699999999996	1.61246e-6
chr22	20918034	20918104	18299860	0	+	0.6	(0.59,1]	chr22	1553633	1	CDS	CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	122	2	3.59089	3.724815	3.85874	7.45913e-5	1.44531e-5	0.00156884	3.72961e-4
chr1	165752101	165752169	1341590	0	-	0.367647	(0.36,0.39]	chr1	137609	1	CDS	CDS:UTR3:EXON_MRNA	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	3.64731	3.72478	3.80225	1.85308e-4	2.27851e-5	0.00322093	5.41358e-4
chr9	33053122	33053206	10631241	0	-	0.47619	(0.455,0.49]	chr9	803377	1	CDS	CDS:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.30139	3.724565	5.14774	0.0530131	7.45457e-5	0.195536	0.00142165
chrX	71240119	71240219	19106934	0	-	0.53	(0.49,0.53]	chrX	1625381	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.60116	3.7243	4.84744	0.0056515	3.70203e-4	0.0422191	0.00515475
chr19	39974293	39974366	17327657	0	+	0.589041	(0.53,0.59]	chr19	1435377	1	CDS	CDS:EXON_MRNA	PSMC4	ENSG00000013275.8	ENST00000157812.7:ENST00000455878.2:ENST00000593455.5:ENST00000601697.5:ENST00000596386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.77921	3.724285	4.66936	0.0132865	0.00103174	0.0740932	0.0121443
chr2	121765133	121765207	2034650	0	+	0.554054	(0.53,0.59]	chr2	192254	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TSN	ENSG00000211460.12	ENST00000455432.5:ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000478165.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.77921	3.724285	4.66936	0.0132865	0.00103174	0.0740932	0.0121443
chr3	94060654	94060751	4316368	0	-	0.556701	(0.53,0.59]	chr3	359955	29	UTR3	UTR3:EXON_MRNA:INTRON	DHFR2	ENSG00000178700.9	ENST00000481631.1:ENST00000314636.3:ENST00000394221.3:ENST00000461173.5:ENST00000619045.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.77921	3.724285	4.66936	0.0132865	0.00103174	0.0740932	0.0121443
chr6	27815143	27815233	7105149	0	+	0.533333	(0.53,0.59]	chr6	543461	1	CDS	CDS:EXON_MRNA	H2BC14	ENSG00000273703.2	ENST00000621112.2	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	3.58031	3.7241999999999997	3.86809	1.18973e-4	3.64147e-5	0.00207755	8.79008e-4
chr3	100748436	100748531	3637801	0	+	0.547368	(0.53,0.59]	chr3	311887	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	105	2	3.66389	3.724195	3.7845	2.13854e-5	2.32736e-7	5.67072e-4	1.1519e-5
chr14	102729374	102729473	14500061	0	+	0.50505	(0.49,0.53]	chr14	1133640	30	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.45798	3.72416	4.99034	0.00353238	1.6002e-4	0.029076	0.00286408
chr12	57511782	57511868	12902982	0	+	0.546512	(0.53,0.59]	chr12	1005393	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000548944.1:ENST00000549603.1:ENST00000546971.5:ENST00000548630.1:ENST00000549048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	3.28422	3.724025	4.16383	0.00659193	2.10061e-4	0.0454205	0.00327655
chr12	124013412	124013509	13130935	0	+	0.350515	(0.33,0.36]	chr12	1026671	6	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	71	2	2.68747	3.723885	4.7603	3.75829e-5	2.59825e-7	8.15231e-4	1.42404e-5
chr2	227533548	227533618	2415167	0	+	0.414286	(0.39,0.42]	chr2	217256	1	CDS	CDS:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.11549	3.723395	4.3313	0.00403491	0.00209984	0.032143	0.0204266
chr20	35658929	35658996	17955050	0	-	0.402985	(0.39,0.42]	chr20	1521118	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1:ENST00000475146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.11549	3.723395	4.3313	0.00403491	0.00209984	0.032143	0.0204266
chr22	39875834	39875925	18372065	0	+	0.417582	(0.39,0.42]	chr22	1563474	7	EXON_PSEUDO	EXON_PSEUDO	UQCRFS1P1	ENSG00000226085.3	ENST00000435169.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	3.11549	3.723395	4.3313	0.00403491	0.00209984	0.032143	0.0204266
chr4	109824585	109824662	5041326	0	+	0.402597	(0.39,0.42]	chr4	410153	3	UTR3	UTR3:EXON_MRNA	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000226796.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.11549	3.723395	4.3313	0.00403491	0.00209984	0.032143	0.0204266
chr9	125362845	125362944	10461766	0	+	0.414141	(0.39,0.42]	chr9	788162	2	UTR3	UTR3:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.11549	3.723395	4.3313	0.00403491	0.00209984	0.032143	0.0204266
chr3	119432080	119432147	4399068	0	-	0.507463	(0.49,0.53]	chr3	364703	1	CDS	CDS:UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000473684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.11892	3.723305	4.32769	0.00398244	6.54988e-6	0.0322851	1.94116e-4
chr15	79313839	79313922	15042953	0	+	0.46988	(0.455,0.49]	chr15	1183507	2	CDS	CDS:EXON_MRNA	TMED3	ENSG00000166557.14	ENST00000299705.10:ENST00000424155.6:ENST00000536821.5:ENST00000543455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	65	2	3.56037	3.723045	3.88572	5.72551e-4	4.51834e-7	0.0078026	2.03245e-5
chr1	40064298	40064370	151890	0	+	0.555556	(0.53,0.59]	chr1	19003	2	CDS	CDS:EXON_MRNA:INTRON	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	3.45404	3.722975	3.99191	5.86351e-5	1.27275e-5	0.00129243	3.35074e-4
chr17	31201410	31201485	16192886	0	+	0.413333	(0.39,0.42]	chr17	1307239	1	CDS	CDS:UTR3:EXON_MRNA	NF1	ENSG00000196712.18	ENST00000356175.7:ENST00000487476.5:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.88836	3.7227949999999996	4.55723	0.0102432	0.00117753	0.062872	0.0127276
chr7	98386192	98386290	8943308	0	-	0.438776	(0.42,0.455]	chr7	682611	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	BAIAP2L1:RPS3AP26	ENSG00000006453.14:ENSG00000214389.2	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1:ENST00000398259.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	12	164	2	3.521	3.72272	3.92444	4.69803e-7	1.71597e-9	2.33864e-5	1.69212e-7
chr3	17157258	17157355	4059092	0	-	0.381443	(0.36,0.39]	chr3	341127	2	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.85784	3.7226549999999996	4.58747	0.00191736	6.55819e-4	0.0183299	0.00860229
chr5	95654061	95654161	6107349	0	+	0.39	(0.36,0.39]	chr5	478149	1	CDS_START	CDS_START:CDS:EXON_MRNA	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000311364.8:ENST00000458310.1:ENST00000513950.2	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.85784	3.7226549999999996	4.58747	0.00191736	6.55819e-4	0.0183299	0.00860229
chr5	97030528	97030628	6118896	0	+	0.38	(0.36,0.39]	chr5	478869	21	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.46497	3.72261	3.98025	0.00881716	0.00105709	0.0562439	0.0123035
chr17	68530276	68530349	16337416	0	+	0.506849	(0.49,0.53]	chr17	1325395	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5:ENST00000586541.5:ENST00000585907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.78308	3.7224	5.66172	0.0425234	3.99372e-6	0.167547	1.28691e-4
chr1	235110798	235110896	1560080	0	-	0.418367	(0.39,0.42]	chr1	156012	16	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	9	134	2	3.30353	3.7222850000000003	4.14104	3.96559e-5	4.70126e-10	9.4815e-4	5.37766e-8
chr18	57607223	57607314	17137527	0	-	0.428571	(0.42,0.455]	chr18	1407159	2	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	3.56514	3.72218	3.87922	1.04705e-4	3.86623e-5	0.0020295	8.37229e-4
chr20	36050625	36050723	17956048	0	-	0.755102	(0.59,1]	chr20	1521358	52	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.19052	3.7221599999999997	5.2538	0.0237927	5.85045e-4	0.109413	0.00793559
chr1	64833704	64833799	1073004	0	-	0.378947	(0.36,0.39]	chr1	109587	6	UTR3	UTR3:EXON_MRNA	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000672574.1:ENST00000673246.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	3.36872	3.72208	4.07544	1.31092e-4	3.61377e-5	0.00226268	8.73633e-4
chr16	69118297	69118393	15993725	0	-	0.520833	(0.49,0.53]	chr16	1284017	4	UTR3	UTR3:EXON_MRNA	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5:ENST00000519534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	3.01617	3.722035	4.4279	0.00196987	8.62231e-4	0.0193972	0.0100487
chr1	153664395	153664474	1298428	0	-	0.506329	(0.49,0.53]	chr1	130394	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	89	2	2.96525	3.721935	4.47862	8.82495e-5	4.15989e-8	0.00178337	2.62586e-6
chr19	18280044	18280143	17499040	0	-	0.525253	(0.49,0.53]	chr19	1468046	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JUND	ENSG00000130522.6	ENST00000252818.5:ENST00000600972.1	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	2.53898	3.7218350000000004	4.90469	1.64482e-4	8.91237e-8	0.0029267300000000002	5.05835e-6
chr1	95191868	95191966	362105	0	+	0.357143	(0.33,0.36]	chr1	35683	1	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.1043	3.72163	4.33896	0.00182033	5.89179e-4	0.0183913	0.00743488
chr6	85678153	85678252	7826461	0	-	0.50505	(0.49,0.53]	chr6	599652	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000624295.3:ENST00000658871.1:ENST00000453754.5:ENST00000625175.3:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000623267.3:ENST00000425170.2:ENST00000433843.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	10	163	2	2.67377	3.721595	4.76942	1.19004e-4	1.61142e-11	0.00226134	2.67204e-9
chr1	11972934	11972997	45486	0	+	0.571429	(0.53,0.59]	chr1	5805	2	CDS	CDS:EXON_MRNA:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	109	2	3.25217	3.72136	4.19055	4.79919e-5	4.3974e-8	0.00109351	2.75435e-6
chr10	74090022	74090110	11117352	0	+	0.477273	(0.455,0.49]	chr10	846239	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	52	2	3.46389	3.72124	3.97859	9.14164e-4	2.2191e-6	0.0110519	7.82023e-5
chr11	118397132	118397231	12157861	0	+	0.40404	(0.39,0.42]	chr11	936937	8	UTR3	UTR3:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.94917	3.7212050000000003	4.49324	0.00121791	0.00108192	0.0130188	0.0124943
chr6	122432319	122432419	7364677	0	+	0.41	(0.39,0.42]	chr6	565430	2	UTR3	UTR3:EXON_MRNA	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.3342	3.720905	5.10761	0.00157538	5.12039e-5	0.015761	0.00114668
chr1	38023727	38023826	143076	0	+	0.323232	(0.29,0.33]	chr1	17941	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	3.44697	3.72075	3.99453	0.00101442	8.03892e-5	0.0112862	0.00167226
chr19	32712729	32712826	17293926	0	+	0.319588	(0.29,0.33]	chr19	1429046	9	UTR3	UTR3:EXON_MRNA	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.44697	3.72075	3.99453	0.00101442	8.03892e-5	0.0112862	0.00167226
chr9	36211869	36211965	10249966	0	+	0.427083	(0.42,0.455]	chr9	771380	2	UTR3	UTR3:EXON_MRNA:INTRON	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	130	2	3.66423	3.720745	3.77726	1.47354e-7	4.6595e-8	7.83554e-6	3.20991e-6
chr2	195680715	195680810	2290372	0	+	0.368421	(0.36,0.39]	chr2	207584	7	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	3.54224	3.72071	3.89918	1.0624e-4	4.51643e-5	0.00205241	9.43703e-4
chr2	199270854	199270951	3114500	0	-	0.42268	(0.42,0.455]	chr2	274929	15	UTR3	UTR3:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.22933	3.7206	5.21187	0.0102262	5.5797e-5	0.062872	0.00112719
chr22	41898648	41898714	18383867	0	+	0.590909	(0.59,1]	chr22	1565079	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1:ENST00000463741.1:ENST00000435061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	34	2	2.99438	3.7205450000000004	4.44671	0.00931497	0.00776449	0.0586162	0.050813
chr5	138560047	138560091	6862400	0	-	0.477273	(0.455,0.49]	chr5	525206	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	3.44026	3.7204749999999995	4.00069	8.71641e-5	5.13615e-5	0.00177086	0.00104999
chr19	35164176	35164245	17303840	0	+	0.608696	(0.59,1]	chr19	1430622	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	159	2	3.31617	3.72032	4.12447	3.02114e-4	3.90119e-7	0.00472028	1.78429e-5
chr5	139316075	139316175	6248954	0	+	0.53	(0.49,0.53]	chr5	486970	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000511333.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	123	2	3.33385	3.72007	4.10629	9.14513e-7	6.88229e-8	3.71126e-5	4.49367e-6
chr6	36487274	36487373	7134464	0	+	0.424242	(0.42,0.455]	chr6	549568	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000474988.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.89192	3.71992	4.54792	0.00157686	9.66045e-4	0.015761	0.0115185
chr7	66944975	66945070	8307601	0	+	0.421053	(0.42,0.455]	chr7	633373	1	CDS	CDS:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5:ENST00000424964.6:ENST00000418375.1:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.89192	3.71992	4.54792	0.00157686	9.66045e-4	0.015761	0.0115185
chr9	7799547	7799634	10545972	0	-	0.678161	(0.59,1]	chr9	799728	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	DMAC1	ENSG00000137038.8	ENST00000358227.5:ENST00000484082.1:ENST00000469050.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	3.17616	3.71985	4.26354	0.0134233	0.00434232	0.0743429	0.0339139
chr10	99406192	99406249	11657516	0	-	0.438596	(0.42,0.455]	chr10	888041	2	CDS	CDS:EXON_MRNA	GOT1	ENSG00000120053.12	ENST00000370508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.91373	3.7198350000000002	4.52594	0.00892357	0.00144145	0.0567495	0.0147046
chr11	3892691	3892789	12239137	0	-	0.438776	(0.42,0.455]	chr11	945719	4	EXON_PSEUDO	EXON_PSEUDO	PPIAP40	ENSG00000230593.3	ENST00000448870.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	2.91373	3.7198350000000002	4.52594	0.00892357	0.00144145	0.0567495	0.0147046
chr7	26185203	26185299	8182979	0	+	0.447917	(0.42,0.455]	chr7	624398	8	CDS	CDS:EXON_MRNA	NFE2L3	ENSG00000050344.9	ENST00000056233.4:ENST00000606261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.91373	3.7198350000000002	4.52594	0.00892357	0.00144145	0.0567495	0.0147046
chr1	212072100	212072156	701399	0	+	0.375	(0.36,0.39]	chr1	71153	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.84089	3.719795	4.5987	0.0128123	9.0208e-4	0.0719798	0.0102618
chr11	130261405	130261497	12659499	0	-	0.380435	(0.36,0.39]	chr11	982745	7	CDS	CDS:EXON_MRNA	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5:ENST00000530205.5:ENST00000529982.5:ENST00000529348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.84089	3.719795	4.5987	0.0128123	9.0208e-4	0.0719798	0.0102618
chr15	44527449	44527549	14899620	0	+	0.38	(0.36,0.39]	chr15	1171638	34	UTR3	UTR3:EXON_MRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.84089	3.719795	4.5987	0.0128123	9.0208e-4	0.0719798	0.0102618
chr5	176508121	176508219	6402689	0	+	0.377551	(0.36,0.39]	chr5	497383	13	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.84089	3.719795	4.5987	0.0128123	9.0208e-4	0.0719798	0.0102618
chr8	96262140	96262219	9498539	0	+	0.531646	(0.53,0.59]	chr8	722428	1	CDS	CDS:EXON_MRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000517557.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.0404	3.7197	5.399	0.0362529	3.02387e-5	0.148525	6.78876e-4
chr17	82237231	82237326	16382686	0	+	0.715789	(0.59,1]	chr17	1332454	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC16A3	ENSG00000141526.18	ENST00000580098.6:ENST00000584689.6:ENST00000392341.6:ENST00000582743.6:ENST00000584781.5:ENST00000578684.6:ENST00000577650.6:ENST00000579572.1:ENST00000582715.1:ENST00000392339.6:ENST00000581287.5:ENST00000617373.5:ENST00000580189.6:ENST00000619321.2:ENST00000578810.1:ENST00000583025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	2.69477	3.719275	4.74378	0.020208	0.00312942	0.0978331	0.0264364
chr16	29665426	29665525	15626164	0	+	0.565657	(0.53,0.59]	chr16	1239197	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	2.03947	3.7192350000000003	5.399	0.00610305	3.02387e-5	0.0439421	6.78876e-4
chr7	56104308	56104391	8827441	0	-	0.674699	(0.59,1]	chr7	673698	2	CDS	CDS:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	166	2	3.16223	3.71894	4.27565	5.82431e-5	1.0823e-6	0.00128898	4.28015e-5
chr21	33520363	33520462	18220499	0	-	0.424242	(0.42,0.455]	chr21	1546361	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	3.52659	3.7187799999999998	3.91097	6.87022e-4	8.75299e-5	0.00876781	0.0016272
chr14	22564974	22565042	14525910	0	-	0.338235	(0.33,0.36]	chr14	1137856	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000489532.6:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.75192	3.71876	4.6856	0.00318114	3.92435e-4	0.0267094	0.00583618
chr1	21884600	21884674	891328	0	-	0.675676	(0.59,1]	chr1	92567	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.80637	3.7187149999999995	4.63106	0.00537945	0.00274489	0.0406564	0.0238522
chr19	40625932	40626009	17330502	0	+	0.649351	(0.59,1]	chr19	1436060	2	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.80637	3.7187149999999995	4.63106	0.00537945	0.00274489	0.0406564	0.0238522
chr15	74920319	74920380	15376263	0	-	0.295082	(0.29,0.33]	chr15	1215543	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.31653	3.7186	4.12067	0.00261621	2.40819e-5	0.0238929	5.6648e-4
chr9	131260526	131260624	10870362	0	-	0.561224	(0.53,0.59]	chr9	824566	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	1.96946	3.71854	5.46762	0.0082201	1.97761e-5	0.0534646	5.29643e-4
chr1	434046	434146	821969	0	-	0.57	(0.53,0.59]	chr1	81335	538	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr1	23949291	23949383	898558	0	-	0.554348	(0.53,0.59]	chr1	93361	4	EXON_PSEUDO	EXON_PSEUDO	H3P1	ENSG00000230228.2	ENST00000421430.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr1	36137111	36137202	939921	0	-	0.56044	(0.53,0.59]	chr1	98933	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAPPC3	ENSG00000054116.12	ENST00000617904.4:ENST00000616074.4:ENST00000616395.4:ENST00000373166.8:ENST00000462715.1:ENST00000373163.5:ENST00000373162.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr1	36161983	36162083	140692	0	+	0.57	(0.53,0.59]	chr1	17454	43	INTRON	INTRON	MAP7D1	ENSG00000116871.16	ENST00000429533.6:ENST00000316156.8:ENST00000474796.2:ENST00000527764.1:ENST00000373150.8:ENST00000373151.6:ENST00000530729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr1	116986867	116986967	425193	0	+	0.59	(0.53,0.59]	chr1	41968	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr1	153817371	153817456	1298892	0	-	0.588235	(0.53,0.59]	chr1	130502	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr10	51698477	51698574	11490826	0	-	0.546392	(0.53,0.59]	chr10	876946	8	CDS	CDS:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr10	104314603	104314699	11678446	0	-	0.583333	(0.53,0.59]	chr10	891073	2	CDS	CDS:EXON_MRNA	ITPRIP	ENSG00000148841.17	ENST00000278071.6:ENST00000337478.3:ENST00000358187.2:ENST00000647721.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr11	60902402	60902465	12402826	0	-	0.539683	(0.53,0.59]	chr11	959930	1	CDS	CDS:EXON_MRNA	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000541371.5:ENST00000546152.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr11	119335313	119335405	12163900	0	+	0.576087	(0.53,0.59]	chr11	938092	2	CDS	CDS:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr12	6388451	6388505	12712805	0	+	0.574074	(0.53,0.59]	chr12	986388	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	LTBR	ENSG00000111321.11	ENST00000539925.5:ENST00000228918.9:ENST00000543190.5:ENST00000544454.5:ENST00000541102.1:ENST00000541005.1:ENST00000543542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr12	6673290	6673365	13188088	0	-	0.586667	(0.53,0.59]	chr12	1032591	2	CDS	CDS:EXON_MRNA	ZNF384	ENSG00000126746.18	ENST00000319770.7:ENST00000683879.1:ENST00000396801.7:ENST00000361959.7:ENST00000355772.8:ENST00000537383.1:ENST00000417772.7:ENST00000542519.1:ENST00000436774.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr12	48937969	48938066	13322619	0	-	0.57732000000000006	(0.53,0.59]	chr12	1045238	24	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr12	120213915	120213990	13579820	0	-	0.586667	(0.53,0.59]	chr12	1068832	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9:ENST00000538144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr12	120699698	120699796	13117503	0	+	0.571429	(0.53,0.59]	chr12	1024005	33	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr15	29704233	29704305	15183815	0	-	0.555556	(0.53,0.59]	chr15	1195081	2	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr15	40459800	40459896	14881862	0	+	0.5625	(0.53,0.59]	chr15	1168613	14	CDS	CDS:EXON_MRNA	BAHD1	ENSG00000140320.12	ENST00000561234.5:ENST00000416165.6:ENST00000560846.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr16	4358035	4358103	15835736	0	-	0.558824	(0.53,0.59]	chr16	1264219	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CORO7-PAM16:CORO7	ENSG00000103426.12:ENSG00000262246.6	ENST00000575334.5:ENST00000572467.5:ENST00000572274.1:ENST00000251166.9:ENST00000571227.5:ENST00000537233.6:ENST00000574025.5:ENST00000576637.1:ENST00000570779.1:ENST00000575531.5:ENST00000575714.5:ENST00000574849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr16	10538000	10538074	15850262	0	-	0.581081	(0.53,0.59]	chr16	1265820	2	CDS	CDS:EXON_MRNA	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000536829.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr16	27225785	27225846	15898840	0	-	0.557377	(0.53,0.59]	chr16	1272845	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NSMCE1	ENSG00000169189.17	ENST00000361439.9:ENST00000569236.5:ENST00000565070.5:ENST00000565384.1:ENST00000562039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr16	29052164	29052258	15622700	0	+	0.531915	(0.53,0.59]	chr16	1238907	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-231C14.10:NPIPB10P	ENSG00000288630.1:ENSG00000196796.5	ENST00000675058.1:ENST00000424293.4	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr16	56683177	56683277	15679341	0	+	0.57	(0.53,0.59]	chr16	1246544	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-343H19.2:MT1X	ENSG00000259827.1:ENSG00000187193.9	ENST00000567563.1:ENST00000394485.5:ENST00000568370.1:ENST00000562939.1:ENST00000564974.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr16	89300715	89300813	16077310	0	-	0.581633	(0.53,0.59]	chr16	1292150	20	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr17	80386249	80386339	16373454	0	+	0.555556	(0.53,0.59]	chr17	1330916	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RNF213	ENSG00000173821.19	ENST00000508628.6:ENST00000582970.5:ENST00000411702.7:ENST00000427003.7:ENST00000570776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr17	81717398	81717491	16381304	0	+	0.537634	(0.53,0.59]	chr17	1332005	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP13-1032I1.10:SLC25A10	ENSG00000262660.1:ENSG00000183048.12	ENST00000571730.1:ENST00000545862.5:ENST00000574129.5:ENST00000350690.10:ENST00000331531.9:ENST00000574884.5:ENST00000570310.5:ENST00000573246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr19	43656559	43656640	17580096	0	-	0.580247	(0.53,0.59]	chr19	1478986	2	CDS	CDS:UTR3:EXON_MRNA	PLAUR	ENSG00000011422.12	ENST00000339082.7:ENST00000593447.5:ENST00000340093.8:ENST00000601723.5:ENST00000221264.8:ENST00000595038.5:ENST00000594364.1:ENST00000593714.5:ENST00000599892.5:ENST00000597107.1:ENST00000602141.5:ENST00000593939.5:ENST00000593396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr20	18526372	18526451	17719534	0	+	0.56962	(0.53,0.59]	chr20	1495679	1	CDS	CDS:EXON_MRNA	SEC23B	ENSG00000101310.17	ENST00000336714.8:ENST00000450074.6:ENST00000262544.6:ENST00000643747.1:ENST00000650089.1:ENST00000377465.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr20	44404965	44405064	17797282	0	+	0.555556	(0.53,0.59]	chr20	1504482	17	INTRON	INTRON	HNF4A	ENSG00000101076.18	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.9:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr21	32345373	32345440	18213540	0	-	0.567164	(0.53,0.59]	chr21	1545542	1	CDS	CDS:EXON_MRNA	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr22	30333820	30333917	18469646	0	-	0.57732000000000006	(0.53,0.59]	chr22	1575821	20	UTR3	UTR3:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr6	149684296	149684395	8018510	0	-	0.575758	(0.53,0.59]	chr6	612683	13	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5:ENST00000392273.7:ENST00000458696.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr7	1934786	1934886	8647449	0	-	0.58	(0.53,0.59]	chr7	661014	360	INTRON	INTRON	MAD1L1:RP11-383A19.1	ENSG00000002822.16:ENSG00000286192.1	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000651235.1:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.61294	3.718505	3.82407	0.0310038	0.0179666	0.130016	0.0918323
chr10	97461495	97461558	11646044	0	-	0.587302	(0.53,0.59]	chr10	887356	1	CDS	CDS:UTR3:EXON_MRNA	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000434538.5:ENST00000495415.5:ENST00000355839.10:ENST00000327238.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr11	61788221	61788320	11971271	0	+	0.565657	(0.53,0.59]	chr11	917369	22	UTR3	UTR3:EXON_MRNA	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1:ENST00000675345.1:ENST00000675792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr11	118339161	118339227	12624412	0	-	0.560606	(0.53,0.59]	chr11	979304	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CD3D	ENSG00000167286.10	ENST00000300692.9:ENST00000534687.5:ENST00000529594.5:ENST00000392884.2:ENST00000526561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr12	9695272	9695371	12728906	0	+	0.535354	(0.53,0.59]	chr12	989545	5	UTR3	UTR3:EXON_MRNA	CLEC2D	ENSG00000069493.15	ENST00000290855.11:ENST00000444971.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr12	53153364	53153457	12885187	0	+	0.548387	(0.53,0.59]	chr12	1002039	2	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P4	ENSG00000257790.1	ENST00000550578.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr12	54535103	54535197	12894034	0	+	0.531915	(0.53,0.59]	chr12	1003212	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2:ENST00000548980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr12	123292107	123292207	13595039	0	-	0.56	(0.53,0.59]	chr12	1070977	31	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr13	44434725	44434804	14002492	0	-	0.531646	(0.53,0.59]	chr13	1097934	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSC22D1	ENSG00000102804.15	ENST00000501704.3:ENST00000458659.3:ENST00000611198.4:ENST00000622051.1:ENST00000261489.6:ENST00000496314.1:ENST00000487881.2:ENST00000496838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr16	5509836	5509936	15509030	0	+	0.56	(0.53,0.59]	chr16	1229735	422	INTRON	INTRON	RBFOX1	ENSG00000078328.23	ENST00000641259.1:ENST00000569895.3:ENST00000585867.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr16	69917708	69917795	15727151	0	+	0.574713	(0.53,0.59]	chr16	1252254	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WWP2	ENSG00000198373.13	ENST00000359154.7:ENST00000544162.5:ENST00000356003.6:ENST00000569297.5:ENST00000567579.5:ENST00000566463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr16	70156626	70156702	15728038	0	+	0.552632	(0.53,0.59]	chr16	1252509	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000568530.5:ENST00000398122.7:ENST00000565186.5:ENST00000562100.5:ENST00000569042.5:ENST00000567046.5:ENST00000564563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr17	48893417	48893456	16255780	0	+	0.538462	(0.53,0.59]	chr17	1317511	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	ATP5MC1	ENSG00000159199.14	ENST00000355938.9:ENST00000513347.1:ENST00000393366.7:ENST00000503641.5:ENST00000514808.5:ENST00000506855.1:ENST00000513781.5:ENST00000504591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr19	41897810	41897885	17337140	0	+	0.573333	(0.53,0.59]	chr19	1437384	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000594521.5:ENST00000599589.5:ENST00000595897.5:ENST00000594258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr19	45632860	45632915	17589931	0	-	0.581818	(0.53,0.59]	chr19	1480360	1	CDS	CDS:EXON_MRNA	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000399594.7:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000592853.5:ENST00000586770.5:ENST00000587804.1:ENST00000588889.5:ENST00000591721.5:ENST00000593255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr19	49818570	49818616	17372892	0	+	0.543478	(0.53,0.59]	chr19	1443768	1	CDS	CDS:EXON_MRNA	MED25	ENSG00000104973.19	ENST00000593595.1:ENST00000593767.3:ENST00000312865.10:ENST00000593636.1:ENST00000538643.5:ENST00000595185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr2	117825522	117825599	2021816	0	+	0.532468	(0.53,0.59]	chr2	191099	2	CDS	CDS:EXON_MRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000415038.1:ENST00000476149.1:ENST00000461443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr20	839800	839888	17872623	0	-	0.579545	(0.53,0.59]	chr20	1512128	5	EXON_PSEUDO	EXON_PSEUDO	RPS10P5	ENSG00000101278.6	ENST00000492704.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr20	62312948	62313010	18029097	0	-	0.580645	(0.53,0.59]	chr20	1528557	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000370691.6:ENST00000252999.7:ENST00000491036.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr22	37666160	37666256	18363153	0	+	0.583333	(0.53,0.59]	chr22	1561850	4	UTR3	UTR3:EXON_MRNA	RP1-37E16.13:PDXP	ENSG00000285304.1:ENSG00000241360.2	ENST00000451997.6:ENST00000215904.7:ENST00000403251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr4	2930837	2930903	5284949	0	-	0.545455	(0.53,0.59]	chr4	425630	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MFSD10	ENSG00000109736.15	ENST00000514800.5:ENST00000514031.5:ENST00000355443.9:ENST00000329687.8:ENST00000503596.5:ENST00000508221.5:ENST00000507272.5:ENST00000507555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr4	70902325	70902395	4878108	0	+	0.585714	(0.53,0.59]	chr4	401862	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr4	124436042	124436140	5629527	0	-	0.530612	(0.53,0.59]	chr4	448938	4	EXON_PSEUDO	EXON_PSEUDO	TUBAP10	ENSG00000248506.1	ENST00000506481.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr5	25910945	25911041	5910422	0	+	0.572917	(0.53,0.59]	chr5	463553	16	EXON_PSEUDO	EXON_PSEUDO	MSNP1	ENSG00000251593.1	ENST00000511640.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr5	146114205	146114258	6891043	0	-	0.54717	(0.53,0.59]	chr5	527440	1	CDS	CDS:UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr6	31558511	31558611	7115594	0	+	0.59	(0.53,0.59]	chr6	545726	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NFKBIL1	ENSG00000204498.11	ENST00000376146.8:ENST00000376148.9:ENST00000376145.8	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chr7	107621043	107621141	8456282	0	+	0.581633	(0.53,0.59]	chr7	646070	26	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000482371.5:ENST00000379119.6:ENST00000491150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chrX	1416295	1416393	18925765	0	-	0.540816	(0.53,0.59]	chrX	1612983	31	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chrX	48914035	48914130	19063609	0	-	0.557895	(0.53,0.59]	chrX	1620588	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000485431.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	13	2	3.61856	3.7184749999999998	3.81839	0.0303021	0.0184435	0.129773	0.0945306
chrX	154349497	154349565	19277957	0	-	0.558824	(0.53,0.59]	chrX	1638241	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000498491.5:ENST00000462590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	3.47991	3.71838	3.95685	6.7738e-5	2.90242e-6	0.0013157	1.08567e-4
chr4	87892335	87892434	4942239	0	+	0.494949	(0.49,0.53]	chr4	406011	6	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	93	2	3.36911	3.718155	4.0672	2.16178e-5	1.03324e-7	5.71712e-4	5.73189e-6
chr14	74782027	74782126	14401398	0	+	0.515152	(0.49,0.53]	chr14	1125425	8	CDS	CDS:EXON_MRNA	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.64528	3.71807	4.79086	0.0202736	4.20783e-4	0.0984041	0.00611538
chr19	19527754	19527808	17264136	0	+	0.740741	(0.59,1]	chr19	1426416	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000428459.6:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	3.17616	3.71791	4.25966	0.00434232	2.95373e-5	0.0339139	6.69635e-4
chr16	16114920	16114998	15568480	0	+	0.551282	(0.53,0.59]	chr16	1232814	3	CDS	CDS:UTR3:EXON_MRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000574761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	3.61133	3.7177	3.82407	0.0179666	4.55298e-4	0.0918323	0.00608573
chr2	197393043	197393115	3106304	0	-	0.388889	(0.36,0.39]	chr2	274499	2	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000479532.1:ENST00000424674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.336	3.7177	5.0994	0.0154226	4.68763e-5	0.0834369	0.00107286
chr6	47624618	47624716	7171950	0	+	0.377551	(0.36,0.39]	chr6	554515	5	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.336	3.7177	5.0994	0.0154226	4.68763e-5	0.0834369	0.00107286
chr1	19308548	19308642	877731	0	-	0.521277	(0.49,0.53]	chr1	90657	2	CDS	CDS:EXON_MRNA	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9:ENST00000489286.5:ENST00000492217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.15207	3.717695	4.28332	0.00347189	0.00338762	0.0288632	0.0286293
chr1	31281434	31281496	918509	0	-	0.5	(0.49,0.53]	chr1	96197	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000489853.1:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.15207	3.717695	4.28332	0.00347189	0.00338762	0.0288632	0.0286293
chr10	119038371	119038439	11717216	0	-	0.529412	(0.49,0.53]	chr10	893769	3	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.15207	3.717695	4.28332	0.00347189	0.00338762	0.0288632	0.0286293
chr12	7158561	7158657	12717478	0	+	0.520833	(0.49,0.53]	chr12	987745	6	UTR3	UTR3:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.15207	3.717695	4.28332	0.00347189	0.00338762	0.0288632	0.0286293
chr16	58708075	58708170	15967624	0	-	0.515789	(0.49,0.53]	chr16	1281403	11	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.15207	3.717695	4.28332	0.00347189	0.00338762	0.0288632	0.0286293
chr14	58794841	58794935	14315541	0	+	0.468085	(0.455,0.49]	chr14	1119032	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01500:RP11-112J1.1	ENSG00000258583.7:ENSG00000213598.4	ENST00000648996.1:ENST00000480540.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	50	2	2.83859	3.7172899999999998	4.59599	0.00215336	9.38471e-7	0.0208395	3.79261e-5
chr2	26192309	26192366	2565650	0	-	0.421053	(0.42,0.455]	chr2	230533	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	2.47621	3.717255	4.9583	0.00161397	5.55326e-8	0.0169243	3.37237e-6
chr11	66369129	66369199	12424345	0	-	0.657143	(0.59,1]	chr11	964657	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.61074	3.716995	4.82325	0.025486	0.002381	0.117089	0.0216895
chr14	101986077	101986175	14495157	0	+	0.520408	(0.49,0.53]	chr14	1132975	5	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	3.15044	3.7168799999999997	4.28332	0.00338762	4.32676e-4	0.0288632	0.00583708
chr11	3676158	3676258	12237714	0	-	0.59	(0.53,0.59]	chr11	945483	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000533346.5:ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000469881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.99511	3.71687	4.43863	0.00254763	9.46531e-4	0.0233955	0.010681
chr20	49089537	49089606	17811799	0	+	0.362319	(0.36,0.39]	chr20	1506568	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	3.33782	3.716735	4.09565	3.59965e-5	2.81403e-5	8.71532e-4	6.42183e-4
chr15	76286370	76286425	15382160	0	-	0.509091	(0.49,0.53]	chr15	1216364	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000560816.5:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1:ENST00000560309.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	3.14975	3.716535	4.28332	0.00338762	8.97896e-5	0.0288632	0.0016645
chr4	143871458	143871557	5695924	0	-	0.494949	(0.49,0.53]	chr4	451429	7	UTR3	UTR3:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	3.14975	3.716535	4.28332	0.00338762	8.97896e-5	0.0288632	0.0016645
chr1	19176591	19176659	876726	0	-	0.411765	(0.39,0.42]	chr1	90321	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	3.67083	3.71612	3.76141	2.14058e-4	1.93844e-5	0.00359478	4.72961e-4
chr6	158636737	158636826	8043783	0	-	0.460674	(0.455,0.49]	chr6	614881	4	UTR3	UTR3:EXON_MRNA	DYNLT1	ENSG00000146425.11	ENST00000367089.8:ENST00000367088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	3.06914	3.7161049999999998	4.36307	0.00218641	6.6649e-4	0.0208941	0.00820018
chrX	155278002	155278064	19283294	0	-	0.451613	(0.42,0.455]	chrX	1639084	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.90616	3.71605	4.52594	0.00162359	0.00144145	0.0169915	0.0147046
chr6	30676779	30676876	7658823	0	-	0.546392	(0.53,0.59]	chr6	584161	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615892.4:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	80	2	3.38664	3.71596	4.04528	4.28524e-5	5.10107e-6	9.98851e-4	1.57702e-4
chr8	47933095	47933172	9817150	0	-	0.324675	(0.29,0.33]	chr8	742855	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.18804	3.715955	4.24387	0.00263476	3.92193e-4	0.0239118	0.00539186
chr2	74528416	74528489	2743301	0	-	0.493151	(0.49,0.53]	chr2	244610	1	CDS	CDS:EXON_MRNA	AUP1	ENSG00000115307.17	ENST00000425118.5:ENST00000377526.4:ENST00000463900.5:ENST00000466894.5:ENST00000464887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	3.40126	3.7157999999999998	4.03034	4.26396e-5	1.73901e-5	9.97006e-4	4.37068e-4
chr6	34588776	34588875	7674088	0	-	0.434343	(0.42,0.455]	chr6	588118	16	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.75179	3.7157999999999998	4.67981	8.66526e-4	5.38444e-4	0.0100799	0.00744072
chr1	161699556	161699607	501625	0	+	0.392157	(0.39,0.42]	chr1	54378	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199595.1	ENST00000362725.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr10	77791372	77791469	11586280	0	-	0.391753	(0.39,0.42]	chr10	882273	7	UTR3	UTR3:EXON_MRNA	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr12	118416133	118416233	13109367	0	+	0.4	(0.39,0.42]	chr12	1023199	18	UTR3	UTR3:EXON_MRNA	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr12	127006839	127006939	13604614	0	-	0.41	(0.39,0.42]	chr12	1072127	58	INTRON	INTRON	LINC02405	ENSG00000249345.8	ENST00000662160.1:ENST00000651439.2:ENST00000512624.6:ENST00000656033.1:ENST00000665379.1:ENST00000671361.1:ENST00000656788.1:ENST00000540244.6	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr15	72351214	72351234	15369511	0	-	0.4	(0.39,0.42]	chr15	1214451	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr19	20258742	20258838	17267289	0	+	0.416667	(0.39,0.42]	chr19	1426851	5	EXON_PSEUDO	EXON_PSEUDO	AC078899.1	ENSG00000213985.4	ENST00000521432.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr19	20259321	20259418	17267295	0	+	0.412371	(0.39,0.42]	chr19	1426851	11	EXON_PSEUDO	EXON_PSEUDO	AC078899.1	ENSG00000213985.4	ENST00000521432.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr2	27652790	27652889	2571358	0	-	0.393939	(0.39,0.42]	chr2	231845	21	UTR3	UTR3:EXON_MRNA	SUPT7L	ENSG00000119760.16	ENST00000337768.10:ENST00000404798.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr20	63732918	63733018	17866312	0	+	0.4	(0.39,0.42]	chr20	1511163	3	SS3_PROX	SS3_PROX:INTRON	ZGPAT:RP4-583P15.15	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr21	37192162	37192213	18115475	0	+	0.411765	(0.39,0.42]	chr21	1536107	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000428693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr4	183664071	183664171	5258281	0	+	0.41	(0.39,0.42]	chr4	422467	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000504526.1:ENST00000505676.5:ENST00000509857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr8	43200166	43200266	9309216	0	+	0.4	(0.39,0.42]	chr8	712997	7	UTR3	UTR3:EXON_MRNA	HGSNAT	ENSG00000165102.15	ENST00000379644.9:ENST00000521576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr8	130330041	130330141	10093036	0	-	0.42	(0.39,0.42]	chr8	758780	831	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr9	128945786	128945880	10866499	0	-	0.404255	(0.39,0.42]	chr9	824002	1	CDS	CDS:EXON_MRNA	DOLK	ENSG00000175283.8	ENST00000372586.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chrX	101598483	101598577	18787813	0	+	0.393617	(0.39,0.42]	chrX	1601556	6	EXON_LNCRNA	EXON_LNCRNA	ARMCX7P	ENSG00000204072.3	ENST00000602449.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	11	2	3.49145	3.715705	3.93996	0.0350273	0.00841622	0.141505	0.054565
chr4	188349560	188349653	5844250	0	-	0.55914	(0.53,0.59]	chr4	459230	3	EXON_PSEUDO	EXON_PSEUDO	RP11-219G10.1	ENSG00000242169.2	ENST00000494861.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	34	2	3.12943	3.71569	4.30195	0.00421989	4.81557e-4	0.0328662	0.00677016
chr15	68181282	68181354	14994929	0	+	0.444444	(0.42,0.455]	chr15	1178722	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000567417.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.57051	3.715445	4.86038	0.0265466	3.34791e-4	0.120071	0.00472923
chr17	42842569	42842669	16230337	0	+	0.43	(0.42,0.455]	chr17	1313600	11	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.57051	3.715445	4.86038	0.0265466	3.34791e-4	0.120071	0.00472923
chr2	70261298	70261386	1878610	0	+	0.420455	(0.42,0.455]	chr2	177437	2	CDS	CDS:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000422380.5:ENST00000414812.5:ENST00000433351.7:ENST00000264441.9:ENST00000451279.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.57051	3.715445	4.86038	0.0265466	3.34791e-4	0.120071	0.00472923
chr7	7878231	7878330	8120199	0	+	0.454545	(0.42,0.455]	chr7	621068	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-505D17.1:UMAD1	ENSG00000283549.1:ENSG00000219545.12	ENST00000469183.5:ENST00000682710.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3:ENST00000406829.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	21	2	2.57051	3.715445	4.86038	0.0265466	3.34791e-4	0.120071	0.00472923
chr9	101390755	101390850	10774673	0	-	0.452632	(0.42,0.455]	chr9	815647	3	CDS	CDS:EXON_MRNA	MRPL50	ENSG00000136897.8	ENST00000374865.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.57051	3.715445	4.86038	0.0265466	3.34791e-4	0.120071	0.00472923
chr16	29664739	29664831	15626157	0	+	0.652174	(0.59,1]	chr16	1239195	11	CDS	CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	530	2	3.42689	3.71524	4.00359	2.6042e-7	9.94937e-9	1.42469e-5	7.72742e-7
chr12	49185554	49185643	13324022	0	-	0.550562	(0.53,0.59]	chr12	1045766	6	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	291	2	3.54297	3.71522	3.88747	5.88132e-9	3.5618e-9	4.91941e-7	3.44269e-7
chr13	46127690	46127723	14009617	0	-	0.454545	(0.42,0.455]	chr13	1098490	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.47379	3.715195	4.9566	0.00996858	2.10615e-4	0.0621728	0.00327655
chr1	173992985	173993060	1373847	0	-	0.373333	(0.36,0.39]	chr1	140093	1	UTR5	UTR5:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.39803	3.715115	4.0322	0.00588589	0.00122711	0.0427941	0.0130695
chr12	110377542	110377617	13536842	0	-	0.386667	(0.36,0.39]	chr12	1064808	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000481473.5:ENST00000552087.1:ENST00000486321.1:ENST00000452721.2:ENST00000450008.3:ENST00000471602.6:ENST00000547199.3:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.39803	3.715115	4.0322	0.00588589	0.00122711	0.0427941	0.0130695
chr12	119674339	119674420	13114452	0	+	0.382716	(0.36,0.39]	chr12	1023543	1	CDS	CDS:UTR5:EXON_MRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.39803	3.715115	4.0322	0.00588589	0.00122711	0.0427941	0.0130695
chrX	66173730	66173801	18717348	0	+	0.478873	(0.455,0.49]	chrX	1596958	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.96139	3.7149850000000004	4.46858	2.95549e-4	2.38087e-6	0.00467597	8.3081e-5
chr9	37199642	37199741	10253640	0	+	0.383838	(0.36,0.39]	chr9	771611	127	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	2.83519	3.71457	4.59395	8.47223e-5	1.25817e-8	0.00159231	1.03382e-6
chr14	98973047	98973131	14784436	0	-	0.535714	(0.53,0.59]	chr14	1158427	3	EXON_PSEUDO	EXON_PSEUDO	RPL3P4	ENSG00000232573.1	ENST00000417615.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	59	2	2.87264	3.7145200000000003	4.5564	0.00168899	1.54434e-6	0.0175515	5.75816e-5
chr20	47210079	47210175	17993108	0	-	0.458333	(0.455,0.49]	chr20	1524924	10	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.92099	3.7145200000000003	4.50805	0.00138399	0.00122223	0.0143168	0.0135383
chr1	173488148	173488243	548624	0	+	0.368421	(0.36,0.39]	chr1	58305	4	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	10	112	2	3.58559	3.7142049999999998	3.84282	1.23173e-7	9.42156e-8	7.5271e-6	5.30719e-6
chrX	78047550	78047648	18746351	0	+	0.469388	(0.455,0.49]	chrX	1599789	11	UTR3	UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	3.26623	3.714135	4.16204	2.31662e-4	1.83061e-5	0.00354314	4.99708e-4
chr11	119334923	119335022	12163896	0	+	0.535354	(0.53,0.59]	chr11	938090	5	UTR5	UTR5:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.8006	3.7141	4.6276	0.00233666	9.26038e-7	0.0221314	3.75136e-5
chr1	180836521	180836618	586124	0	+	0.494845	(0.49,0.53]	chr1	60713	1	CDS	CDS:EXON_MRNA:INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	3.42954	3.713935	3.99833	0.00105489	1.95792e-6	0.0123035	7.01677e-5
chr1	155257335	155257386	1307292	0	-	0.352941	(0.33,0.36]	chr1	132102	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5:ENST00000465312.5:ENST00000462151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	3.68275	3.713885	3.74502	2.19782e-4	2.69528e-5	0.00339463	6.88144e-4
chr22	20952966	20953064	18300213	0	+	0.571429	(0.53,0.59]	chr22	1553647	33	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	1.73953	3.71382	5.68811	0.0146694	5.40688e-6	0.0800115	1.64762e-4
chr5	140568813	140568908	6255394	0	+	0.610526	(0.59,1]	chr5	487697	8	UTR3	UTR3:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	5	137	2	2.19221	3.713785	5.23536	0.00615677	6.73524e-8	0.0439741	3.99016e-6
chr12	104319469	104319527	13058835	0	+	0.310345	(0.29,0.33]	chr12	1017659	1	CDS	CDS:EXON_MRNA:INTRON	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000524698.5:ENST00000527688.5:ENST00000527335.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.22218	3.71373	5.20528	0.023782	2.18753e-5	0.109413	5.75389e-4
chr19	18574869	18574959	17258829	0	+	0.566667	(0.53,0.59]	chr19	1425551	1	CDS	CDS:EXON_MRNA	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000595683.5:ENST00000595158.5:ENST00000598780.5:ENST00000599551.5:ENST00000597451.5:ENST00000599595.5:ENST00000596272.5:ENST00000594527.1	protein_coding	protein_coding	protein_coding	protein_coding	20	318	2	3.43278	3.713725	3.99467	3.82916e-8	1.66144e-10	2.45349e-6	2.36397e-8
chr8	141431138	141431232	9643444	0	+	0.702128	(0.59,1]	chr8	730369	2	UTR3	UTR3:EXON_MRNA	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1:ENST00000524028.1	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.0542	3.713715	4.37323	0.00990413	0.00663549	0.061536	0.0456243
chr6	116278417	116278516	7908897	0	-	0.50505	(0.49,0.53]	chr6	605657	37	UTR3	UTR3:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.8681	3.713695	4.55929	0.00175299	0.00116196	0.0171299	0.0130851
chrX	71567583	71567667	18733085	0	+	0.52381	(0.49,0.53]	chrX	1598837	2	CDS	CDS:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000474633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.8681	3.713695	4.55929	0.00175299	0.00116196	0.0171299	0.0130851
chr17	50966071	50966171	16586098	0	-	0.35	(0.33,0.36]	chr17	1363310	40	UTR3	UTR3:EXON_MRNA	SPAG9	ENSG00000008294.21	ENST00000262013.12:ENST00000618113.4:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.60198	3.71368	3.82538	6.01238e-4	1.40963e-4	0.00811676	0.002378
chr19	38836721	38836780	17561063	0	-	0.491525	(0.49,0.53]	chr19	1475060	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	122	2	3.28902	3.7135949999999998	4.13817	1.26675e-6	5.61303e-8	5.3987e-5	3.39862e-6
chr5	137753517	137753607	6858095	0	-	0.588889	(0.53,0.59]	chr5	524501	4	CDS	CDS:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.30988	3.713475	5.11707	0.00643853	1.35965e-4	0.0452349	0.00231202
chr22	17592673	17592736	18423764	0	-	0.47619	(0.455,0.49]	chr22	1569461	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000473248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.35515	3.713435	5.07172	0.0140117	8.3067e-5	0.0767536	0.00171126
chr11	61848221	61848284	11971850	0	+	0.555556	(0.53,0.59]	chr11	917438	2	CDS	CDS:EXON_MRNA	FADS2	ENSG00000134824.14	ENST00000257261.10:ENST00000522056.5:ENST00000521849.5:ENST00000278840.9:ENST00000521571.6:ENST00000355484.3:ENST00000543584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	3.61856	3.71331	3.80806	0.0303021	1.65022e-4	0.129773	0.00269147
chrX	3860789	3860858	18932387	0	-	0.536232	(0.53,0.59]	chrX	1613478	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000381108.3:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	29	2	3.61856	3.71331	3.80806	0.0303021	1.65022e-4	0.129773	0.00269147
chr11	60850797	60850892	11966834	0	+	0.473684	(0.455,0.49]	chr11	916389	6	UTR3	UTR3:EXON_MRNA	CCDC86	ENSG00000110104.13	ENST00000227520.10:ENST00000535217.1:ENST00000649393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.66563	3.713055	4.76048	0.0043075	3.99985e-4	0.0334284	0.00588767
chr9	33922322	33922412	10633425	0	-	0.455556	(0.455,0.49]	chr9	803789	8	UTR3	UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.66563	3.713055	4.76048	0.0043075	3.99985e-4	0.0334284	0.00588767
chr3	42594703	42594800	3435698	0	+	0.381443	(0.36,0.39]	chr3	298846	3	UTR3	UTR3:EXON_MRNA	SS18L2	ENSG00000008324.12	ENST00000447630.5:ENST00000011691.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.18348	3.7127099999999995	4.24194	0.00310315	0.00276729	0.0263402	0.0247437
chr8	140524350	140524450	10132086	0	-	0.55	(0.53,0.59]	chr8	760954	43	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.87264	3.7126900000000003	4.55274	0.00168899	0.00167999	0.0175515	0.0164993
chr15	82369861	82369961	15058712	0	+	0.56	(0.53,0.59]	chr15	1184652	141	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	24	2	3.1234	3.712675	4.30195	0.00421989	0.00390623	0.0328662	0.0322851
chr17	28348017	28348116	16484308	0	-	0.585859	(0.53,0.59]	chr17	1347487	15	UTR3	UTR3:EXON_MRNA	POLDIP2	ENSG00000004142.12	ENST00000540200.6:ENST00000618887.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.1234	3.712675	4.30195	0.00421989	0.00390623	0.0328662	0.0322851
chr1	11013727	11013827	41944	0	+	0.5	(0.49,0.53]	chr1	4980	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TARDBP	ENSG00000120948.19	ENST00000473118.5:ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000472476.5:ENST00000476201.5:ENST00000613864.4:ENST00000614757.4:ENST00000621715.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr1	26794706	26794802	111119	0	+	0.5	(0.49,0.53]	chr1	13384	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PIGV	ENSG00000060642.11	ENST00000455364.2:ENST00000674335.1:ENST00000674202.1:ENST00000472757.5:ENST00000674222.1:ENST00000431541.6:ENST00000374145.6:ENST00000674273.1:ENST00000078527.9:ENST00000674317.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr1	61459330	61459429	231809	0	+	0.515152	(0.49,0.53]	chr1	27318	41	UTR3	UTR3:EXON_MRNA	NFIA	ENSG00000162599.17	ENST00000403491.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr1	109092985	109093082	396851	0	+	0.505155	(0.49,0.53]	chr1	38412	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1:ENST00000479160.1:ENST00000473828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr1	116577486	116577562	1243940	0	-	0.526316	(0.49,0.53]	chr1	121897	2	CDS	CDS:EXON_MRNA	IGSF3	ENSG00000143061.18	ENST00000369483.5:ENST00000369486.8:ENST00000318837.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr1	150499215	150499293	468201	0	+	0.512821	(0.49,0.53]	chr1	47350	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TARS2	ENSG00000143374.17	ENST00000438568.6:ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369051.7:ENST00000467982.6:ENST00000480070.5:ENST00000463555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr11	61554422	61554520	12405239	0	-	0.5	(0.49,0.53]	chr11	960492	26	INTRON	INTRON	SYT7	ENSG00000011347.10	ENST00000539008.6:ENST00000263846.8:ENST00000540677.5:ENST00000535826.5:ENST00000542670.5:ENST00000542836.5:ENST00000539246.5:ENST00000539468.5:ENST00000545053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr12	6527967	6528029	12713522	0	+	0.5	(0.49,0.53]	chr12	986601	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000542492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr12	48693784	48693877	13321385	0	-	0.494624	(0.49,0.53]	chr12	1044936	8	CDS	CDS:UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr12	95040475	95040563	13478381	0	-	0.5	(0.49,0.53]	chr12	1059816	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NR2C1	ENSG00000120798.17	ENST00000333003.10:ENST00000552861.5:ENST00000551647.5:ENST00000546416.5:ENST00000547594.5:ENST00000622476.4:ENST00000545833.5:ENST00000393101.7:ENST00000552791.1:ENST00000330677.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr12	132769611	132769711	13624690	0	-	0.52	(0.49,0.53]	chr12	1073451	8	UTR3	UTR3:EXON_MRNA	GOLGA3	ENSG00000090615.15	ENST00000204726.8:ENST00000450791.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr15	64685471	64685570	14978128	0	+	0.525253	(0.49,0.53]	chr15	1177327	39	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr15	77484139	77484237	15037361	0	+	0.510204	(0.49,0.53]	chr15	1182624	13	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr16	16278661	16278725	15569293	0	+	0.5	(0.49,0.53]	chr16	1233036	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000678148.1:ENST00000574157.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr16	16350197	16350284	15570011	0	+	0.494253	(0.49,0.53]	chr16	1233291	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AC138969.4	ENSG00000183889.12	ENST00000537112.5:ENST00000381497.6:ENST00000527703.2:ENST00000331436.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr16	27470203	27470299	15899471	0	-	0.510417	(0.49,0.53]	chr16	1272944	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GTF3C1	ENSG00000077235.18	ENST00000561623.5:ENST00000356183.9:ENST00000569653.1:ENST00000567843.1:ENST00000571886.1:ENST00000569394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr17	22181538	22181605	16168582	0	+	0.492537	(0.49,0.53]	chr17	1304312	1	EXON_LNCRNA	EXON_LNCRNA	UBBP4	ENSG00000263563.6	ENST00000648259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr19	323934	324034	17414943	0	-	0.5	(0.49,0.53]	chr19	1451482	99	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr2	27201401	27201453	2569367	0	-	0.519231	(0.49,0.53]	chr2	231188	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6:ENST00000408041.5:ENST00000461319.5:ENST00000481751.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr20	19680074	19680172	17726616	0	+	0.5	(0.49,0.53]	chr20	1495875	61	INTRON	INTRON	SLC24A3	ENSG00000185052.13	ENST00000328041.11	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr3	38142057	38142154	3419197	0	+	0.515464	(0.49,0.53]	chr3	297125	9	UTR3	UTR3:EXON_MRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000484513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr3	76436027	76436127	3565408	0	+	0.52	(0.49,0.53]	chr3	309339	7	INTRON	INTRON	ROBO2	ENSG00000185008.17	ENST00000487694.7:ENST00000602589.5:ENST00000475034.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr3	119434761	119434821	4399096	0	-	0.516667	(0.49,0.53]	chr3	364709	1	CDS	CDS:UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000473684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr7	23516362	23516395	8725947	0	-	0.515152	(0.49,0.53]	chr7	666162	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.11	ENST00000297071.9:ENST00000392502.8:ENST00000538367.5:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr7	66810374	66810473	8307182	0	+	0.50505	(0.49,0.53]	chr7	633315	12	UTR3	UTR3:EXON_MRNA	RP11-792A8.5:RABGEF1	ENSG00000284461.2:ENSG00000154710.18	ENST00000503687.2:ENST00000284957.9:ENST00000439720.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr8	726968	727067	9656072	0	-	0.494949	(0.49,0.53]	chr8	732582	12	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr9	5763503	5763594	10170203	0	+	0.516484	(0.49,0.53]	chr9	765958	5	CDS	CDS:EXON_MRNA	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3:ENST00000545243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr9	128310886	128310954	10864425	0	-	0.514706	(0.49,0.53]	chr9	823609	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRUB2	ENSG00000167112.10	ENST00000372890.6:ENST00000460320.1:ENST00000461180.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr9	137019241	137019306	10892652	0	-	0.523077	(0.49,0.53]	chr9	828182	2	CDS	CDS:UTR3:EXON_MRNA	ABCA2	ENSG00000107331.17	ENST00000614293.4:ENST00000265662.9:ENST00000371605.7:ENST00000341511.11:ENST00000459850.5:ENST00000487109.5:ENST00000492260.5:ENST00000470535.2:ENST00000467624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chrX	137441739	137441836	19251007	0	-	0.494845	(0.49,0.53]	chrX	1635515	6	EXON_PSEUDO	EXON_PSEUDO	RAC1P4	ENSG00000237584.1	ENST00000419413.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chrX	154655168	154655246	18918645	0	+	0.512821	(0.49,0.53]	chrX	1612247	2	EXON_PSEUDO	EXON_PSEUDO	AF277315.13	ENSG00000226141.1	ENST00000442033.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	12	2	3.69037	3.712655	3.73494	0.0226513	0.0189345	0.10505	0.0934721
chr10	84139508	84139593	11164484	0	+	0.670588	(0.59,1]	chr10	848113	1	UTR5	UTR5:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	3.19	3.71265	4.2353	0.0165254	0.0039188	0.0873033	0.0314356
chr13	95206614	95206697	14111255	0	-	0.60241	(0.59,1]	chr13	1104448	2	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.19	3.71265	4.2353	0.0165254	0.0039188	0.0873033	0.0314356
chr16	86327	86421	15815305	0	-	0.617021	(0.59,1]	chr16	1259914	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NPRL3	ENSG00000103148.17	ENST00000610509.1:ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	3.19	3.71265	4.2353	0.0165254	0.0039188	0.0873033	0.0314356
chr20	38130022	38130120	17962931	0	-	0.653061	(0.59,1]	chr20	1522305	28	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.19	3.71265	4.2353	0.0165254	0.0039188	0.0873033	0.0314356
chr17	42311289	42311383	16228143	0	+	0.553191	(0.53,0.59]	chr17	1312855	7	UTR3	UTR3:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.16037	3.7126400000000004	5.26491	0.0254312	6.31437e-5	0.117089	0.00124286
chr17	75847862	75847930	16685244	0	-	0.573529	(0.53,0.59]	chr17	1373629	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5:ENST00000588373.5:ENST00000433525.6:ENST00000589236.1:ENST00000416574.6:ENST00000589642.5:ENST00000587374.5:ENST00000593002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.65894	3.7126349999999997	4.76633	0.0193255	6.98999e-4	0.0943643	0.00846751
chr15	45053198	45053298	14900969	0	+	0.41	(0.39,0.42]	chr15	1171839	94	INTRON	INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.18155	3.7126200000000003	5.24369	0.0283931	4.15285e-5	0.127654	8.8376e-4
chr21	29344783	29344880	18090064	0	+	0.360825	(0.36,0.39]	chr21	1533713	21	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	7	68	2	2.98492	3.7124699999999997	4.44002	1.36722e-5	2.93008e-6	3.55439e-4	1.09386e-4
chr17	55017883	55017983	16272067	0	+	0.45	(0.42,0.455]	chr17	1320007	99	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000405898.5:ENST00000434978.6:ENST00000398391.6:ENST00000463234.1	protein_coding	protein_coding	protein_coding	protein_coding	19	223	2	2.21926	3.71235	5.20544	1.3783e-4	1e-12	0.00254294	2.25522e-10
chr16	2762446	2762545	15494899	0	+	0.636364	(0.59,1]	chr16	1227802	10	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000630499.2:ENST00000571378.5	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	3.28558	3.712045	4.13851	3.5027e-4	5.66622e-5	0.00532165	0.00114182
chr12	49752963	49752972	12869159	0	+	0.222222	[0,0.29]	chr12	999608	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.82443	3.7120100000000003	4.59959	0.0180803	7.13769e-4	0.0920398	0.0085671400000000009
chr2	9584248	9584342	2508156	0	-	0.287234	[0,0.29]	chr2	226349	4	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.82443	3.7120100000000003	4.59959	0.0180803	7.13769e-4	0.0920398	0.0085671400000000009
chr2	20033019	20033111	2539724	0	-	0.23913	[0,0.29]	chr2	228406	5	UTR3	UTR3:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.82443	3.7120100000000003	4.59959	0.0180803	7.13769e-4	0.0920398	0.0085671400000000009
chr3	33498132	33498232	4113285	0	-	0.29	[0,0.29]	chr3	343701	20	UTR3	UTR3:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000464961.1:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.82443	3.7120100000000003	4.59959	0.0180803	7.13769e-4	0.0920398	0.0085671400000000009
chr5	149854225	149854325	6293043	0	+	0.49	(0.455,0.49]	chr5	490959	68	UTR3	UTR3:EXON_MRNA	PPARGC1B	ENSG00000155846.17	ENST00000309241.10	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.35214	3.7119299999999997	5.07172	0.0455621	8.3067e-5	0.168044	0.00171126
chr1	1047835	1047895	2350	0	+	0.666667	(0.59,1]	chr1	531	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000466223.1:ENST00000478677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.30708	3.7119	4.11672	0.0222273	0.00252451	0.105595	0.0226777
chr3	195783157	195783256	4661098	0	-	0.59596	(0.59,1]	chr3	385270	45	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	3.30708	3.7119	4.11672	0.0222273	0.00252451	0.105595	0.0226777
chr6	31860106	31860172	7662783	0	-	0.590909	(0.59,1]	chr6	585392	2	CDS	CDS:UTR3:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	3.30708	3.7119	4.11672	0.0222273	0.00252451	0.105595	0.0226777
chr6	44089332	44089423	7710150	0	-	0.626374	(0.59,1]	chr6	591817	2	EXON_PSEUDO	EXON_PSEUDO	RP5-1120P11.4	ENSG00000183239.5	ENST00000331979.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	36	2	3.30708	3.7119	4.11672	0.0222273	0.00252451	0.105595	0.0226777
chr1	236483343	236483442	769252	0	+	0.434343	(0.42,0.455]	chr1	77526	8	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:INTRON	EDARADD:ENO1P1	ENSG00000186197.15:ENSG00000244457.2	ENST00000637660.1:ENST00000334232.9:ENST00000359362.6:ENST00000642595.1:ENST00000366587.4	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:transcribed_processed_pseudogene	3	47	2	3.57226	3.71188	3.8515	0.0119089	5.15583e-6	0.0686664	1.58804e-4
chr1	45694259	45694347	175263	0	+	0.295455	(0.29,0.33]	chr1	22796	5	UTR3	UTR3:EXON_MRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.62025	3.711735	4.80322	0.00573581	2.14303e-4	0.0417422	0.00359478
chrX	1392061	1392113	18925629	0	-	0.692308	(0.59,1]	chrX	1612971	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	504	2	3.64586	3.711725	3.77759	1.32963e-7	3.5352e-8	8.01671e-6	2.29293e-6
chr6	31817102	31817198	7116674	0	+	0.635417	(0.59,1]	chr6	546204	14	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	13	334	2	3.30557	3.711455	4.1173400000000004	1.46704e-6	9.89219e-8	6.07056e-5	5.52901e-6
chr19	53617072	53617163	17387954	0	+	0.406593	(0.39,0.42]	chr19	1446582	4	EXON_PSEUDO	EXON_PSEUDO	OSTCP3	ENSG00000269608.1	ENST00000593607.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	26	2	2.784	3.7114149999999997	4.63883	0.00261393	5.68159e-4	0.0230705	0.0077844
chr12	69599933	69600004	12943562	0	+	0.535211	(0.53,0.59]	chr12	1009017	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000550653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	161	2	2.4991	3.7111799999999997	4.92326	3.51269e-4	5.07198e-11	0.00533566	7.44435e-9
chr12	6598357	6598425	13187391	0	-	0.544118	(0.53,0.59]	chr12	1032384	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	2.47	3.7111650000000003	4.95233	0.0089333	3.02711e-4	0.0567495	0.00439897
chr4	17883621	17883719	5338106	0	-	0.397959	(0.39,0.42]	chr4	429285	32	UTR3	UTR3:EXON_MRNA:INTRON	LCORL	ENSG00000178177.16	ENST00000675131.1:ENST00000326877.8:ENST00000635767.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	3.66467	3.7111	3.75753	3.60066e-4	2.04026e-4	0.00544157	0.00320361
chr16	20781707	20781787	15582853	0	+	0.4375	(0.42,0.455]	chr16	1234770	1	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1	protein_coding	protein_coding	protein_coding	protein_coding	7	123	2	2.5451	3.71091	4.87672	0.00112955	4.78091e-11	0.0128875	7.04678e-9
chr1	46286112	46286208	981896	0	-	0.520833	(0.49,0.53]	chr1	103530	1	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.78773	3.710555	4.63338	0.00257389	9.56909e-4	0.0235767	0.010724
chr17	41872106	41872182	16543797	0	-	0.526316	(0.49,0.53]	chr17	1356472	2	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.78773	3.710555	4.63338	0.00257389	9.56909e-4	0.0235767	0.010724
chr1	10419649	10419749	39914	0	+	0.54	(0.53,0.59]	chr1	4838	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000498356.1:ENST00000496718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	133	2	3.57624	3.7104150000000002	3.84459	1.21279e-6	1.41513e-7	5.18778e-5	7.53989e-6
chr7	106250982	106251082	8977868	0	-	0.33	(0.29,0.33]	chr7	687059	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000680482.1:ENST00000463871.2:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000680616.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	3.29722	3.7103349999999997	4.12345	9.57168e-6	1.26128e-6	2.66171e-4	5.37756e-5
chr17	7857023	7857123	16430802	0	-	0.59	(0.53,0.59]	chr17	1339887	1	CDS_START	CDS_START:CDS:EXON_MRNA	NAA38	ENSG00000183011.14	ENST00000575208.2:ENST00000333775.9:ENST00000575071.5:ENST00000575771.6:ENST00000576861.5:ENST00000576384.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.64837	3.710295	4.77222	0.0199467	6.67251e-4	0.0984041	0.00867533
chr6	39194593	39194676	7690408	0	-	0.578313	(0.53,0.59]	chr6	589679	1	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.64837	3.710295	4.77222	0.0199467	6.67251e-4	0.0984041	0.00867533
chr1	26244241	26244318	108546	0	+	0.558442	(0.53,0.59]	chr1	12901	2	CDS	CDS:EXON_MRNA:INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.11275	3.710255	4.30776	0.00407571	0.00407289	0.0324137	0.032143
chr19	44986454	44986514	17350261	0	+	0.583333	(0.53,0.59]	chr19	1439370	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000587537.5:ENST00000589158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	3.11275	3.710255	4.30776	0.00407571	0.00407289	0.0324137	0.032143
chr9	122378774	122378846	10452630	0	+	0.541667	(0.53,0.59]	chr9	787058	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.11275	3.710255	4.30776	0.00407571	0.00407289	0.0324137	0.032143
chrX	53549413	53549505	19077339	0	-	0.543478	(0.53,0.59]	chrX	1622712	6	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.11275	3.710255	4.30776	0.00407571	0.00407289	0.0324137	0.032143
chr14	24439923	24440002	14535492	0	-	0.468354	(0.455,0.49]	chr14	1140198	3	UTR3	UTR3:EXON_MRNA	SDR39U1	ENSG00000100445.18	ENST00000544691.6:ENST00000399395.8:ENST00000556548.5:ENST00000553930.5:ENST00000556262.5:ENST00000538105.6:ENST00000554698.5:ENST00000556707.5:ENST00000555365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.40009	3.7102450000000005	4.0204	0.00736097	0.00120619	0.0490627	0.0129255
chr5	132198878	132198932	6833518	0	-	0.481481	(0.455,0.49]	chr5	522694	1	CDS	CDS:UTR3:EXON_MRNA	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.40009	3.7102450000000005	4.0204	0.00736097	0.00120619	0.0490627	0.0129255
chr6	158605266	158605347	7521817	0	+	0.481481	(0.455,0.49]	chr6	573960	1	CDS	CDS:EXON_MRNA	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.40009	3.7102450000000005	4.0204	0.00736097	0.00120619	0.0490627	0.0129255
chr1	149923840	149923927	1287292	0	-	0.666667	(0.59,1]	chr1	127936	1	CDS	CDS:EXON_MRNA	SF3B4	ENSG00000143368.10	ENST00000271628.9	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.5215	3.7100350000000004	4.89857	0.032241	0.00182139	0.135671	0.0176016
chr15	74411555	74411632	15374441	0	-	0.636364	(0.59,1]	chr15	1215155	1	CDS	CDS:EXON_MRNA:PRIMIRNA	SEMA7A:MIR6881	ENSG00000138623.10:ENSG00000277391.1	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6:ENST00000616450.1:ENST00000569617.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	34	2	2.5215	3.7100350000000004	4.89857	0.032241	0.00182139	0.135671	0.0176016
chr15	90265958	90266040	15098912	0	+	0.634146	(0.59,1]	chr15	1187922	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-697E2.6:NGRN	ENSG00000261147.1:ENSG00000182768.9	ENST00000561573.1:ENST00000331497.3:ENST00000379095.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.5215	3.7100350000000004	4.89857	0.032241	0.00182139	0.135671	0.0176016
chr2	27204790	27204860	2569409	0	-	0.614286	(0.59,1]	chr2	231212	1	CDS	CDS:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.5215	3.7100350000000004	4.89857	0.032241	0.00182139	0.135671	0.0176016
chr21	31685650	31685733	18211335	0	-	0.626506	(0.59,1]	chr21	1545286	2	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	2.5215	3.7100350000000004	4.89857	0.032241	0.00182139	0.135671	0.0176016
chr20	5115510	5115572	17887789	0	-	0.387097	(0.36,0.39]	chr20	1514077	2	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	3.0454	3.709815	4.37423	7.17459e-5	4.42053e-6	0.00151448	1.39924e-4
chr1	54209945	54210038	200403	0	+	0.55914	(0.53,0.59]	chr1	25592	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1:ENST00000398219.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.86102	3.70981	4.5586	0.0017805	0.00161229	0.0172974	0.0169168
chr3	5179073	5179169	3278249	0	+	0.333333	(0.33,0.36]	chr3	288772	4	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	3.14772	3.70972	4.27172	6.79194e-4	2.08592e-7	0.00876781	1.05363e-5
chr2	96283534	96283623	2790352	0	-	0.573034	(0.53,0.59]	chr2	248728	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	75	2	3.34735	3.7096549999999997	4.07196	1.46925e-4	1.26681e-6	0.0026854	4.89488e-5
chr7	121297143	121297243	8496841	0	+	0.19	[0,0.29]	chr7	648451	16	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	15	123	2	3.12609	3.709485	4.29288	9.32699e-7	2.47962e-10	4.16986e-5	3.0429e-8
chr7	30632258	30632347	8203893	0	+	0.516854	(0.49,0.53]	chr7	625861	1	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	2.85963	3.70946	4.55929	0.00116196	7.04784e-5	0.0130851	0.00135879
chr22	29297826	29297887	18336710	0	+	0.442623	(0.42,0.455]	chr22	1558209	1	CDS	CDS:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3:ENST00000610553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	3.46349	3.709435	3.95538	9.0025e-4	6.68846e-5	0.0102618	0.00142352
chr1	156239777	156239865	486994	0	+	0.477273	(0.455,0.49]	chr1	51472	3	UTR3	UTR3:EXON_MRNA:INTRON	PMF1-BGLAP:PMF1	ENSG00000260238.6:ENSG00000160783.19	ENST00000490491.5:ENST00000368279.7:ENST00000368273.8:ENST00000368276.8:ENST00000368277.3:ENST00000320139.5:ENST00000567140.3	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	3.55688	3.709205	3.86153	5.21014e-6	1.21905e-6	1.60138e-4	5.21134e-5
chr15	88899494	88899532	15434279	0	-	0.526316	(0.49,0.53]	chr15	1220382	1	CDS	CDS:UTR3:EXON_MRNA	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.99849	3.7089	4.41931	0.00630123	3.4941e-6	0.0445415	1.14163e-4
chr4	169706867	169706966	5218056	0	+	0.454545	(0.42,0.455]	chr4	420923	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.86963	3.708775	4.54792	9.66045e-4	4.62477e-4	0.0115185	0.00613242
chr14	92143100	92143197	14458242	0	+	0.494845	(0.49,0.53]	chr14	1128930	2	CDS	CDS:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.68246	3.7087	3.73494	0.0189345	3.06313e-4	0.0934721	0.00442973
chr19	805012	805099	17189513	0	+	0.563218	(0.53,0.59]	chr19	1411030	1	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1:ENST00000585956.5:ENST00000587136.1:ENST00000585932.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	9	127	2	2.94968	3.70866	4.46764	9.96331e-6	5.65391e-8	3.01429e-4	3.41755e-6
chr15	29700819	29700915	15183780	0	-	0.34375	(0.33,0.36]	chr15	1195074	16	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.00765	3.7086	5.40955	0.0287001	1.14206e-5	0.128757	3.08108e-4
chrX	49173128	49173204	18693769	0	+	0.513158	(0.49,0.53]	chrX	1594665	1	CDS	CDS:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6:ENST00000376322.7	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	3.28292	3.70856	4.1342	3.85662e-5	6.96953e-7	9.23895e-4	2.93629e-5
chr7	30924574	30924668	8206219	0	+	0.43617	(0.42,0.455]	chr7	626043	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	AQP1	ENSG00000240583.14	ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	3.56514	3.70832	3.8515	0.0119089	3.86623e-5	0.0686664	8.37229e-4
chr2	8785933	8786030	2505136	0	-	0.329897	(0.29,0.33]	chr2	225968	3	CDS	CDS:UTR3:EXON_MRNA	KIDINS220	ENSG00000134313.16	ENST00000569008.2:ENST00000496383.5:ENST00000256707.8:ENST00000473731.5:ENST00000488729.5:ENST00000489024.5:ENST00000319688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.48886	3.70829	4.92772	0.0055888	1.56621e-4	0.0419759	0.00259991
chr6	27893652	27893743	7105351	0	+	0.582418	(0.53,0.59]	chr6	543493	2	CDS	CDS:EXON_MRNA	H2BC17	ENSG00000274641.2	ENST00000616182.2	protein_coding	protein_coding	protein_coding	protein_coding	29	449	2	3.32049	3.7080849999999996	4.09568	1.44099e-8	1.45568e-11	1.06421e-6	2.66012e-9
chr11	62885536	62885608	11974462	0	+	0.611111	(0.59,1]	chr11	918066	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000457660.6:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	419	2	3.44377	3.7079500000000003	3.97213	3.67595e-7	1.27211e-7	1.91521e-5	6.8713e-6
chr1	198731671	198731726	648234	0	+	0.363636	(0.36,0.39]	chr1	65152	2	CDS	CDS:EXON_MRNA	PTPRC	ENSG00000081237.20	ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000367367.8:ENST00000529828.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	20	2	2.38564	3.7079199999999997	5.0302	0.0476159	1.15931e-4	0.17993	0.00204552
chr10	68646043	68646139	11090655	0	+	0.385417	(0.36,0.39]	chr10	842885	15	CDS	CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.38564	3.7079199999999997	5.0302	0.0476159	1.15931e-4	0.17993	0.00204552
chr1	152032505	152032583	1295110	0	-	0.435897	(0.42,0.455]	chr1	129726	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.17433	3.7078299999999995	4.24133	0.00326918	3.82052e-4	0.0282494	0.0052929
chr1	42766597	42766688	966643	0	-	0.791209	(0.59,1]	chr1	101785	2	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000372526.2:ENST00000492956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	3.34171	3.7077999999999998	4.07389	0.00234977	7.9402e-5	0.0222173	0.00150391
chr4	99071168	99071264	5548209	0	-	0.302083	(0.29,0.33]	chr4	443145	3	UTR3	UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.77585	3.707795	4.63974	0.0143131	4.81181e-4	0.0780602	0.00677016
chr7	107759974	107760074	8457147	0	+	0.32	(0.29,0.33]	chr7	646252	9	UTR3	UTR3:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.77585	3.707795	4.63974	0.0143131	4.81181e-4	0.0780602	0.00677016
chr13	46793396	46793444	14012445	0	-	0.4375	(0.42,0.455]	chr13	1098902	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.17397	3.70765	4.24133	0.00326918	0.0031821	0.0282494	0.0267094
chr16	58528561	58528648	15966307	0	-	0.436782	(0.42,0.455]	chr16	1281081	2	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000570139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.17397	3.70765	4.24133	0.00326918	0.0031821	0.0282494	0.0267094
chr19	43607419	43607517	17579669	0	-	0.44898	(0.42,0.455]	chr19	1478892	3	UTR3	UTR3:EXON_MRNA	ZNF428	ENSG00000131116.12	ENST00000300811.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.17397	3.70765	4.24133	0.00326918	0.0031821	0.0282494	0.0267094
chr5	151800759	151800814	6299728	0	+	0.436364	(0.42,0.455]	chr5	491943	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1:ENST00000677608.1:ENST00000676507.1:ENST00000678612.1:ENST00000676715.1:ENST00000676899.1:ENST00000677658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	3.17397	3.70765	4.24133	0.00326918	0.0031821	0.0282494	0.0267094
chr1	149840986	149841057	1286938	0	-	0.71831	(0.59,1]	chr1	127829	3	CDS	CDS:EXON_MRNA	H3C14	ENSG00000203811.1	ENST00000369158.1	protein_coding	protein_coding	protein_coding	protein_coding	7	243	2	2.97139	3.7075449999999996	4.4437	3.85356e-4	1.30161e-8	0.00531819	1.06296e-6
chr17	28687303	28687387	16177076	0	+	0.5	(0.49,0.53]	chr17	1305409	1	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000581908.1:ENST00000585230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.38097	3.70739	5.03381	0.0425419	1.49689e-4	0.167547	0.0024973
chr5	138424252	138424341	6244532	0	+	0.505618	(0.49,0.53]	chr5	486562	3	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000505756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.38097	3.70739	5.03381	0.0425419	1.49689e-4	0.167547	0.0024973
chr4	82377301	82377400	4927073	0	+	0.585859	(0.53,0.59]	chr4	404827	22	INTRON	INTRON	HNRNPD-DT	ENSG00000272677.1	ENST00000609575.1	lncRNA	lncRNA	lncRNA	lncRNA	128	2405	2	2.83406	3.70735	4.58064	4.89308e-8	1e-12	3.33997e-6	2.25522e-10
chr11	57416572	57416670	12394526	0	-	0.510204	(0.49,0.53]	chr11	958660	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	146	2	3.5287	3.707285	3.88587	1.54299e-6	6.7528e-9	6.34179e-5	5.51194e-7
chr17	22523691	22523783	16169254	0	+	0.358696	(0.33,0.36]	chr17	1304367	4	UTR5	UTR5:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	3.14227	3.706995	4.27172	1.5366e-4	2.08592e-7	0.00279114	1.05363e-5
chr5	126819046	126819146	6202669	0	+	0.42	(0.39,0.42]	chr5	483202	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000395354.1:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	3.04948	3.706945	4.36441	1.91318e-5	4.74002e-6	4.6791e-4	1.63674e-4
chr12	93409444	93409543	13472808	0	-	0.414141	(0.39,0.42]	chr12	1059385	39	UTR3	UTR3:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	1.73522	3.70689	5.67856	0.0216784	1.29189e-6	0.103158	5.48279e-5
chr15	56093741	56093841	15299172	0	-	0.4	(0.39,0.42]	chr15	1207656	4	CDS	CDS:EXON_MRNA	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	3.44923	3.706665	3.9641	0.00105208	6.346e-5	0.0123035	0.00124725
chr3	14486881	14486980	3320851	0	+	0.353535	(0.33,0.36]	chr3	292287	20	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	2.05605	3.70666	5.35727	0.0063694	9.85137e-10	0.0449937	1.12936e-7
chr19	11113686	11113762	17230114	0	+	0.552632	(0.53,0.59]	chr19	1419589	3	CDS	CDS:EXON_MRNA:PRIMIRNA	LDLR:MIR6886	ENSG00000130164.14:ENSG00000284553.1	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000619864.1:ENST00000559340.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	10	144	2	3.32938	3.706525	4.08367	1.14839e-6	2.72547e-7	4.9396e-5	1.31718e-5
chr22	37225654	37225750	18503492	0	-	0.604167	(0.59,1]	chr22	1578938	5	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.33806	3.706295	5.07453	0.00632881	0.00117617	0.0448545	0.0132131
chr12	910368	910466	12681688	0	+	0.316327	(0.29,0.33]	chr12	984184	17	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	3.04457	3.70601	4.36745	1.09203e-4	4.53307e-6	0.00209994	1.42727e-4
chr20	44506826	44506911	17982069	0	-	0.388235	(0.36,0.39]	chr20	1523390	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.9102	3.7058600000000004	4.50152	5.15161e-4	2.95456e-8	0.00719513	1.96716e-6
chr9	78328119	78328188	10321078	0	+	0.333333	(0.33,0.36]	chr9	777282	2	CDS	CDS:EXON_MRNA:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.7655	3.705515	4.64553	0.0175892	6.69086e-4	0.0918323	0.00820018
chr9	130101164	130101223	10488142	0	+	0.355932	(0.33,0.36]	chr9	791951	2	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.07736	3.7054	5.33344	0.0442037	1.82386e-5	0.172163	4.52248e-4
chr6	26251840	26251931	7101658	0	+	0.56044	(0.53,0.59]	chr6	542880	2	CDS	CDS:EXON_MRNA	H2BC9	ENSG00000275713.2	ENST00000619466.2	protein_coding	protein_coding	protein_coding	protein_coding	8	129	2	3.24839	3.7053599999999998	4.16233	4.84953e-6	5.48732e-8	1.51537e-4	3.68183e-6
chr1	45002824	45002919	973520	0	-	0.494737	(0.49,0.53]	chr1	102742	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HECTD3	ENSG00000126107.15	ENST00000372168.7:ENST00000486132.5:ENST00000372172.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.33324	3.705215	4.07719	0.0074411	0.00162947	0.0492519	0.0169972
chr16	81526010	81526110	15770204	0	+	0.42	(0.39,0.42]	chr16	1255450	55	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.62131	3.705045	4.78878	0.00609677	4.27222e-4	0.0439136	0.00577513
chr18	46088182	46088257	17103841	0	-	0.346667	(0.33,0.36]	chr18	1404364	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	93	2	2.27433	3.705035	5.13574	0.00200332	5.71715e-11	0.0196867	8.27296e-9
chr16	152909	153004	15480560	0	+	0.568421	(0.53,0.59]	chr16	1224141	1	CDS_START	CDS_START:CDS:EXON_MRNA	HBZ	ENSG00000130656.6	ENST00000652335.1:ENST00000252951.3	protein_coding	protein_coding	protein_coding	protein_coding	34	541	2	3.41088	3.7049250000000002	3.99897	7.8856e-9	6.99452e-12	6.31141e-7	1.37827e-9
chr7	100873303	100873378	8429403	0	+	0.493333	(0.49,0.53]	chr7	643737	1	UTR3	UTR3:EXON_MRNA	TRIP6	ENSG00000087077.14	ENST00000200457.9:ENST00000476870.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.13501	3.70489	5.27477	0.0287874	4.14521e-5	0.128869	8.8376e-4
chrX	153955246	153955345	19275645	0	-	0.606061	(0.59,1]	chrX	1637914	13	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.24397	3.704865	5.16576	0.0206682	6.55716e-4	0.0997234	0.0080931
chr2	106698195	106698291	2825362	0	-	0.447917	(0.42,0.455]	chr2	252231	10	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	2.36247	3.704635	5.0468	0.0462889	1.33918e-4	0.176878	0.00229039
chr9	136412809	136412892	10512199	0	+	0.445783	(0.42,0.455]	chr9	796181	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PMPCA	ENSG00000165688.12	ENST00000612553.4:ENST00000371717.8:ENST00000371720.5:ENST00000622209.4:ENST00000399219.7:ENST00000614402.4:ENST00000610649.4:ENST00000620895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.36247	3.704635	5.0468	0.0462889	1.33918e-4	0.176878	0.00229039
chr1	54205109	54205201	200352	0	+	0.521739	(0.49,0.53]	chr1	25578	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.56183	3.7046349999999997	4.84744	0.0261296	3.70203e-4	0.118976	0.00515475
chr2	27222865	27222951	1691537	0	+	0.5	(0.49,0.53]	chr2	165663	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.56183	3.7046349999999997	4.84744	0.0261296	3.70203e-4	0.118976	0.00515475
chr3	12899627	12899724	4042317	0	-	0.515464	(0.49,0.53]	chr3	339376	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.4415	3.704535	3.96757	9.98297e-4	6.21316e-5	0.0111246	0.00134149
chr17	8160664	8160759	16432009	0	-	0.378947	(0.36,0.39]	chr17	1340284	17	UTR3	UTR3:EXON_MRNA:INTRON	RP11-599B13.6:VAMP2	ENSG00000263620.1:ENSG00000220205.9	ENST00000498285.1:ENST00000316509.11:ENST00000404970.3	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	3.10403	3.70453	4.30503	7.76959e-6	5.5145e-6	2.43892e-4	1.6788e-4
chr1	151176558	151176643	1292173	0	-	0.505882	(0.49,0.53]	chr1	128990	4	UTR3	UTR3:EXON_MRNA	VPS72	ENSG00000163159.14	ENST00000368892.9:ENST00000354473.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.51981	3.70434	3.88887	6.88328e-4	9.98984e-5	0.00876781	0.00180257
chr5	10679327	10679425	6447538	0	-	0.44898	(0.42,0.455]	chr5	502258	2	UTR3	UTR3:EXON_MRNA	DAP	ENSG00000112977.16	ENST00000230895.11	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.19674	3.704305	5.21187	0.0254904	5.5797e-5	0.117089	0.00112719
chr22	19968736	19968831	18296525	0	+	0.705263	(0.59,1]	chr22	1553022	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000677675.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	171	2	3.68764	3.704255	3.72087	4.42534e-5	1.55371e-6	0.00102453	5.79065e-5
chr7	102377612	102377711	8438473	0	+	0.424242	(0.42,0.455]	chr7	644576	9	INTRON	INTRON	PRKRIP1:RP11-163E9.2	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	4	36	2	2.1201	3.7039649999999997	5.28783	0.00744913	2.17539e-5	0.0492835	5.73422e-4
chr19	35250503	35250581	17303928	0	+	0.641026	(0.59,1]	chr19	1430655	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.06258	3.7037250000000004	4.34487	0.0123678	0.00616167	0.0705839	0.0438642
chr21	43970652	43970729	18137514	0	+	0.623377	(0.59,1]	chr21	1538537	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	34	2	3.06258	3.7037250000000004	4.34487	0.0123678	0.00616167	0.0705839	0.0438642
chr4	2249194	2249292	5283081	0	-	0.622449	(0.59,1]	chr4	425429	19	UTR3	UTR3:EXON_MRNA	MXD4	ENSG00000123933.17	ENST00000337190.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.06258	3.7037250000000004	4.34487	0.0123678	0.00616167	0.0705839	0.0438642
chr17	76741968	76742048	16359414	0	+	0.4875	(0.455,0.49]	chr17	1328639	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MFSD11	ENSG00000092931.11	ENST00000586622.5:ENST00000588460.5:ENST00000621483.4:ENST00000355954.7:ENST00000587661.5:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000588031.5:ENST00000588670.5:ENST00000588768.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.9967	3.7035549999999997	4.41041	0.00650423	0.00218771	0.0454205	0.0202707
chr18	35990410	35990507	17077735	0	-	0.484536	(0.455,0.49]	chr18	1403036	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000587563.5:ENST00000585879.1:ENST00000399022.9:ENST00000590898.5:ENST00000357384.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.9967	3.7035549999999997	4.41041	0.00650423	0.00218771	0.0454205	0.0202707
chr2	20278582	20278661	2540934	0	-	0.481013	(0.455,0.49]	chr2	228538	1	CDS	CDS:EXON_MRNA:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.9967	3.7035549999999997	4.41041	0.00650423	0.00218771	0.0454205	0.0202707
chr6	42886255	42886309	7153845	0	+	0.462963	(0.455,0.49]	chr6	552209	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000462348.1:ENST00000459829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.9967	3.7035549999999997	4.41041	0.00650423	0.00218771	0.0454205	0.0202707
chr8	117523531	117523618	10035466	0	-	0.482759	(0.455,0.49]	chr8	755494	4	EXON_PSEUDO	EXON_PSEUDO	RPS10P16	ENSG00000239917.3	ENST00000483812.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	20	2	2.9967	3.7035549999999997	4.41041	0.00650423	0.00218771	0.0454205	0.0202707
chr17	28724263	28724359	16177309	0	+	0.5	(0.49,0.53]	chr17	1305508	5	UTR3	UTR3:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.72712	3.70342	4.67972	9.78408e-4	6.94757e-4	0.0109424	0.00876781
chr20	44512800	44512897	17982131	0	-	0.42268	(0.42,0.455]	chr20	1523408	1	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.72686	3.703335	4.67981	0.00330337	5.38444e-4	0.027613	0.00744072
chr1	220007269	220007338	1511072	0	-	0.463768	(0.455,0.49]	chr1	151053	2	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	3.20468	3.703285	4.20189	0.00397662	6.38295e-5	0.0322851	0.00125289
chr3	152345919	152346019	3817321	0	+	0.34	(0.33,0.36]	chr3	325643	103	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	3.14227	3.70314	4.26401	1.5366e-4	1.51656e-8	0.00279114	1.11085e-6
chr12	56111181	56111245	12898074	0	+	0.453125	(0.42,0.455]	chr12	1004161	1	CDS	CDS:EXON_MRNA:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11:ENST00000552266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	115	2	3.48422	3.7027799999999997	3.92134	3.22308e-7	2.5284e-7	1.70564e-5	1.24119e-5
chr15	58596760	58596859	15310669	0	-	0.393939	(0.39,0.42]	chr15	1208273	81	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.0503	3.70269	4.35508	0.00570576	5.2004e-6	0.0424438	1.59965e-4
chrX	100156180	100156279	19147537	0	-	0.565657	(0.53,0.59]	chrX	1628114	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP8	ENSG00000230592.2	ENST00000429844.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	2.63316	3.70269	4.77222	0.00474401	6.67251e-4	0.0361423	0.00867533
chr21	44805814	44805913	18277268	0	-	0.414141	(0.39,0.42]	chr21	1550219	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	102	2	2.67594	3.7025050000000004	4.72907	4.55776e-5	4.00419e-9	0.00105297	3.51297e-7
chr5	140567559	140567656	6255381	0	+	0.670103	(0.59,1]	chr5	487695	4	CDS	CDS:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.06696	3.70248	5.338	0.0170848	3.196e-4	0.0897702	0.00457916
chrX	303061	303159	18549193	0	+	0.489796	(0.455,0.49]	chrX	1585413	39	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	2.89854	3.7024150000000002	4.50629	4.22484e-4	3.09017e-8	0.00613535	2.04921e-6
chr10	50343623	50343721	11486899	0	-	0.489796	(0.455,0.49]	chr10	876733	2	CDS	CDS:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	3.06914	3.702395	4.33565	6.6649e-4	5.69287e-6	0.00820018	1.88744e-4
chrX	120072515	120072615	19194060	0	-	0.5	(0.49,0.53]	chrX	1631790	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	8	122	2	3.45044	3.7023900000000003	3.95434	1.22935e-5	1.10691e-8	3.58328e-4	8.44848e-7
chr1	183630460	183630548	1404964	0	-	0.386364	(0.36,0.39]	chr1	142122	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6:ENST00000602490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.6711	3.70228	4.73346	0.00434596	3.2963e-4	0.0335517	0.00504024
chr16	75657340	75657432	15742069	0	+	0.26087	[0,0.29]	chr16	1254288	9	UTR3	UTR3:EXON_MRNA:INTRON	TERF2IP	ENSG00000166848.7	ENST00000300086.5:ENST00000653858.1:ENST00000564671.2:ENST00000659145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.8304	3.70228	4.57416	0.0121878	6.75561e-4	0.0701019	0.00873562
chr18	8756455	8756555	16749905	0	+	0.22	[0,0.29]	chr18	1381200	356	INTRON	INTRON	MTCL1	ENSG00000168502.17	ENST00000306329.15:ENST00000517570.5:ENST00000359865.7:ENST00000522146.1:ENST00000400050.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.8304	3.70228	4.57416	0.0121878	6.75561e-4	0.0701019	0.00873562
chr8	47849378	47849440	9816264	0	-	0.467742	(0.455,0.49]	chr8	742641	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.74211	3.7021049999999995	4.6621	0.00330545	7.84472e-4	0.028478	0.00927662
chr10	75222326	75222402	11126524	0	+	0.447368	(0.42,0.455]	chr10	846664	2	CDS	CDS:EXON_MRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000332211.10:ENST00000313132.8	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	2.47715	3.702045	4.92694	4.42432e-4	7.19661e-8	0.00630885	4.21199e-6
chr7	97864327	97864396	8940739	0	-	0.391304	(0.39,0.42]	chr7	682272	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000495255.1:ENST00000437657.5:ENST00000448127.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	5	48	2	2.91028	3.70176	4.49324	0.00108192	5.0472e-5	0.0124943	0.0010363
chr5	74705224	74705320	6036515	0	+	0.354167	(0.33,0.36]	chr5	473466	1	CDS_START	CDS_START:CDS:EXON_MRNA	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000513079.5:ENST00000261416.12:ENST00000510820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	3.56761	3.701735	3.83586	1.7178e-4	5.36554e-6	0.00302124	1.64061e-4
chr7	138573574	138573642	8563430	0	+	0.544118	(0.53,0.59]	chr7	653291	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.21941	3.70157	4.18373	0.00266171	1.85867e-5	0.0240332	4.56627e-4
chr1	182384504	182384577	1401221	0	-	0.547945	(0.53,0.59]	chr1	141692	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000461447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	307	2	3.21669	3.7015599999999997	4.18643	2.54027e-7	4.44994e-11	1.39704e-5	6.62331e-9
chr9	33166757	33166835	10632126	0	-	0.692308	(0.59,1]	chr9	803466	1	CDS	CDS:EXON_MRNA	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.41536	3.701435	3.98751	0.0301044	0.00164655	0.129773	0.0163443
chr1	40071626	40071719	151976	0	+	0.473118	(0.455,0.49]	chr1	19043	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7:ENST00000461993.1:ENST00000494114.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	3.66739	3.7013350000000003	3.73528	2.02214e-5	1.49591e-6	5.39633e-4	5.62205e-5
chr1	205790751	205790849	1462471	0	-	0.469388	(0.455,0.49]	chr1	147533	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.20069	3.7012899999999997	4.20189	0.00397662	0.00285821	0.0322851	0.0245841
chr10	95625361	95625455	11633065	0	-	0.478723	(0.455,0.49]	chr10	886025	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000489386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.20069	3.7012899999999997	4.20189	0.00397662	0.00285821	0.0322851	0.0245841
chr12	93640916	93641012	13473454	0	-	0.479167	(0.455,0.49]	chr12	1059444	2	EXON_PSEUDO	EXON_PSEUDO	RP11-887P2.3	ENSG00000186076.5	ENST00000548270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	3.20069	3.7012899999999997	4.20189	0.00397662	0.00285821	0.0322851	0.0245841
chr16	58158263	58158353	15965607	0	-	0.455556	(0.455,0.49]	chr16	1280931	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.20069	3.7012899999999997	4.20189	0.00397662	0.00285821	0.0322851	0.0245841
chr3	49126430	49126497	4172782	0	-	0.462687	(0.455,0.49]	chr3	350568	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAMB2	ENSG00000172037.14	ENST00000418109.5:ENST00000305544.9:ENST00000486298.5:ENST00000488638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.20069	3.7012899999999997	4.20189	0.00397662	0.00285821	0.0322851	0.0245841
chr9	128982901	128982964	10482581	0	+	0.460317	(0.455,0.49]	chr9	791065	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.20069	3.7012899999999997	4.20189	0.00397662	0.00285821	0.0322851	0.0245841
chr15	60351191	60351251	15316731	0	-	0.466667	(0.455,0.49]	chr15	1208922	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	3.63374	3.7012799999999997	3.76882	1.00626e-5	6.69408e-7	3.03291e-4	2.84186e-5
chr13	39013384	39013483	13976232	0	-	0.474747	(0.455,0.49]	chr13	1096566	8	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.46389	3.700915	3.93794	9.14164e-4	7.43966e-5	0.0110519	0.00142165
chrX	41218521	41218597	18669107	0	+	0.460526	(0.455,0.49]	chrX	1592112	3	CDS	CDS:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.46389	3.700915	3.93794	9.14164e-4	7.43966e-5	0.0110519	0.00142165
chr1	10416986	10417051	39882	0	+	0.430769	(0.42,0.455]	chr1	4820	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000493288.1:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	81	2	3.23839	3.700705	4.16302	2.92986e-4	4.41013e-8	0.00464297	2.76133e-6
chr7	113117398	113117478	9015331	0	-	0.45	(0.42,0.455]	chr7	688971	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SMIM30	ENSG00000214194.9	ENST00000397764.8:ENST00000441359.1:ENST00000413744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.31161	3.700705	4.0898	0.00698074	0.00186138	0.0473262	0.018635
chrX	53575642	53575715	19077634	0	-	0.452055	(0.42,0.455]	chrX	1622829	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.31161	3.700705	4.0898	0.00698074	0.00186138	0.0473262	0.018635
chr4	185161426	185161524	5832049	0	-	0.285714	[0,0.29]	chr4	458275	19	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.80134	3.7004650000000003	4.59959	0.0049344	7.13769e-4	0.0379087	0.0085671400000000009
chr20	58996572	58996672	18026086	0	-	0.43	(0.42,0.455]	chr20	1527927	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000680156.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	95	2	2.7523	3.700375	4.64845	0.0153283	4.76892e-10	0.0828908	5.4479e-8
chr7	29072300	29072361	8745016	0	-	0.42623	(0.42,0.455]	chr7	667271	1	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000409850.5:ENST00000448959.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.7523	3.70013	4.64796	0.0153283	6.51077e-7	0.0828908	2.77961e-5
chr9	35062088	35062155	10638123	0	-	0.537313	(0.53,0.59]	chr9	804523	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	3.47419	3.69996	3.92573	8.75273e-4	8.62301e-5	0.0106963	0.00160749
chr2	135857950	135858004	2898090	0	-	0.425926	(0.42,0.455]	chr2	258524	2	CDS	CDS:EXON_MRNA:INTRON	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	3.54838	3.69994	3.8515	0.0119089	5.9986e-4	0.0686664	0.0075062
chr3	44933117	44933199	4149365	0	-	0.451219	(0.42,0.455]	chr3	346707	1	CDS	CDS:UTR3:EXON_MRNA	ZDHHC3	ENSG00000163812.15	ENST00000339420.7:ENST00000424952.7:ENST00000296127.7:ENST00000479314.1:ENST00000342790.8:ENST00000433512.5:ENST00000455235.5:ENST00000419642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.54838	3.69994	3.8515	0.0119089	5.9986e-4	0.0686664	0.0075062
chr3	183679186	183679286	3946031	0	+	0.43	(0.42,0.455]	chr3	331445	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KLHL24	ENSG00000114796.16	ENST00000242810.11:ENST00000454652.6	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.54838	3.69994	3.8515	0.0119089	5.9986e-4	0.0686664	0.0075062
chr4	80161226	80161324	4918655	0	+	0.438776	(0.42,0.455]	chr4	404565	2	EXON_PSEUDO	EXON_PSEUDO	RPSAP39	ENSG00000244002.1	ENST00000467439.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	3.54838	3.69994	3.8515	0.0119089	5.9986e-4	0.0686664	0.0075062
chr7	25123601	25123700	8730814	0	-	0.323232	(0.29,0.33]	chr7	666449	51	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7:ENST00000409409.5:ENST00000409764.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.42047	3.69994	3.97941	1.8012e-4	5.81801e-5	0.003142	0.00116944
chr8	128100979	128101071	9615835	0	+	0.521739	(0.49,0.53]	chr8	728754	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000670535.1:ENST00000670009.1:ENST00000668351.1:ENST00000657682.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1:ENST00000667630.1	lncRNA	lncRNA	lncRNA	lncRNA	3	49	2	3.16986	3.69986	4.22986	3.95698e-4	1.25249e-5	0.00587341	3.30689e-4
chr3	9969718	9969801	4031236	0	-	0.554217	(0.53,0.59]	chr3	338382	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC3	ENSG00000125037.12	ENST00000245046.6:ENST00000487465.5:ENST00000497557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	78	2	3.12943	3.699795	4.27016	4.81557e-4	2.78714e-7	0.00677016	1.34066e-5
chr3	12899917	12900014	4042320	0	-	0.443299	(0.42,0.455]	chr3	339376	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.23707	3.699715	4.16236	2.71467e-4	1.83138e-5	0.00404536	4.99708e-4
chr13	112546678	112546776	14159326	0	-	0.591837	(0.59,1]	chr13	1107575	3	UTR3	UTR3:EXON_MRNA:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000611152.1:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.76802	3.69954	4.63106	0.0158525	0.00537945	0.0854671	0.0406564
chr15	73570240	73570331	15371884	0	-	0.604396	(0.59,1]	chr15	1214693	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000563691.5:ENST00000565282.5:ENST00000564551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.76802	3.69954	4.63106	0.0158525	0.00537945	0.0854671	0.0406564
chr1	165655367	165655404	515904	0	+	0.621622	(0.59,1]	chr1	55491	1	CDS	CDS:EXON_MRNA:INTRON	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000494074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.68392	3.69951	4.7151	0.0202468	0.00412279	0.0984041	0.0325842
chr10	80519072	80519171	11152036	0	+	0.636364	(0.59,1]	chr10	847928	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.68392	3.69951	4.7151	0.0202468	0.00412279	0.0984041	0.0325842
chr21	46161478	46161553	18280633	0	-	0.706667	(0.59,1]	chr21	1550788	1	CDS	CDS:EXON_MRNA	SPATC1L	ENSG00000160284.15	ENST00000330205.10:ENST00000291672.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.68392	3.69951	4.7151	0.0202468	0.00412279	0.0984041	0.0325842
chr9	122381370	122381461	10452657	0	+	0.604396	(0.59,1]	chr9	787064	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.68392	3.69951	4.7151	0.0202468	0.00412279	0.0984041	0.0325842
chr1	9735098	9735174	854666	0	-	0.578947	(0.53,0.59]	chr1	86260	3	CDS	CDS:UTR3:EXON_MRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.62668	3.6994499999999997	4.77222	0.00157636	6.67251e-4	0.015761	0.00867533
chr1	92832012	92832063	354048	0	+	0.686275	(0.59,1]	chr1	34806	1	UTR5	UTR5:EXON_MRNA	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1	protein_coding	protein_coding	protein_coding	protein_coding	72	1846	2	2.95464	3.699445	4.44425	5.86872e-7	5.86431e-12	2.81409e-5	1.08137e-9
chr11	57739200	57739260	11952424	0	+	0.566667	(0.53,0.59]	chr11	914738	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	3.11275	3.699395	4.28604	0.00407571	9.59485e-6	0.032143	2.93255e-4
chr12	93402467	93402567	13019178	0	+	0.45	(0.42,0.455]	chr12	1013446	32	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.7523	3.69927	4.64624	0.0153283	8.75333e-4	0.0828908	0.0101169
chr15	34906615	34906712	15207150	0	-	0.42268	(0.42,0.455]	chr15	1197353	2	CDS	CDS:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.7523	3.69927	4.64624	0.0153283	8.75333e-4	0.0828908	0.0101169
chr7	34931072	34931172	8766514	0	-	0.45	(0.42,0.455]	chr7	668474	23	UTR3	UTR3:EXON_MRNA	DPY19L1	ENSG00000173852.15	ENST00000310974.8:ENST00000638088.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.7523	3.69927	4.64624	0.0153283	8.75333e-4	0.0828908	0.0101169
chrX	49174334	49174425	18693786	0	+	0.571429	(0.53,0.59]	chrX	1594676	1	CDS	CDS:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6	protein_coding	protein_coding	protein_coding	protein_coding	7	118	2	3.22744	3.6989850000000004	4.17053	1.57108e-5	5.21295e-8	4.3971e-4	3.19969e-6
chrX	301982	302081	18549182	0	+	0.585859	(0.53,0.59]	chrX	1585413	28	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	3.39827	3.69885	3.99943	1.84711e-5	2.15316e-7	5.02409e-4	1.08055e-5
chr9	129502519	129502618	10485927	0	+	0.313131	(0.29,0.33]	chr9	791614	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1:ENST00000427778.1:ENST00000608669.1:ENST00000653436.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	16	2	2.59395	3.6985849999999996	4.80322	0.0249836	2.14303e-4	0.114013	0.00359478
chr7	158733816	158733914	9159306	0	-	0.295918	(0.29,0.33]	chr7	699685	30	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.17855	3.698455	5.21836	0.0183673	3.15783e-5	0.0928041	7.02218e-4
chr1	23967174	23967271	898588	0	-	0.340206	(0.33,0.36]	chr1	93362	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.51887	3.6982600000000003	4.87765	0.0358636	2.2423e-4	0.147298	0.00344776
chr1	67259600	67259695	264132	0	+	0.336842	(0.33,0.36]	chr1	29507	6	UTR3	UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000347310.10:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.51887	3.6982600000000003	4.87765	0.0358636	2.2423e-4	0.147298	0.00344776
chr10	49019255	49019353	11480487	0	-	0.346939	(0.33,0.36]	chr10	875953	52	UTR3	UTR3:EXON_MRNA	VSTM4	ENSG00000165633.13	ENST00000332853.9	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.51887	3.6982600000000003	4.87765	0.0358636	2.2423e-4	0.147298	0.00344776
chr2	151474971	151475071	2134934	0	+	0.34	(0.33,0.36]	chr2	197867	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.51887	3.6982600000000003	4.87765	0.0358636	2.2423e-4	0.147298	0.00344776
chr6	70860432	70860531	7224124	0	+	0.333333	(0.33,0.36]	chr6	557532	2	UTR3	UTR3:EXON_MRNA	SMAP1	ENSG00000112305.15	ENST00000370452.7:ENST00000316999.9:ENST00000370455.8:ENST00000619054.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.51887	3.6982600000000003	4.87765	0.0358636	2.2423e-4	0.147298	0.00344776
chr5	917935	918027	5851397	0	+	0.25	[0,0.29]	chr5	460060	10	UTR3	UTR3:EXON_MRNA:INTRON	TRIP13	ENSG00000071539.14	ENST00000166345.8:ENST00000510412.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.28583	3.6980649999999997	4.1103	0.00493104	0.00346525	0.0366648	0.0293796
chr6	30652915	30653013	7112037	0	+	0.581633	(0.53,0.59]	chr6	545034	1	UTR3	UTR3:EXON_MRNA	C6orf136	ENSG00000204564.12	ENST00000293604.10:ENST00000488383.5:ENST00000376473.9:ENST00000651131.1:ENST00000446773.6:ENST00000465699.5:ENST00000467801.2:ENST00000468785.1:ENST00000460172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	3.30943	3.69771	4.08599	0.0018255	3.38473e-5	0.0183913	7.45971e-4
chr1	89713004	89713103	346879	0	+	0.444444	(0.42,0.455]	chr1	34108	4	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.03532	3.6976449999999996	5.35997	0.040947	2.41298e-5	0.163285	5.6648e-4
chrX	20150907	20151007	18985587	0	-	0.43	(0.42,0.455]	chrX	1616690	11	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.03532	3.6976449999999996	5.35997	0.040947	2.41298e-5	0.163285	5.6648e-4
chr6	170549059	170549113	8091143	0	-	0.388889	(0.36,0.39]	chr6	618046	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	2.46777	3.697615	4.92746	4.3886e-4	5.53333e-8	0.00591388	3.70319e-6
chr11	9445585	9445682	11792892	0	+	0.309278	(0.29,0.33]	chr11	902941	5	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	3.3764	3.697585	4.01877	1.02344e-5	2.06603e-8	3.0736e-4	1.44594e-6
chr12	56144222	56144313	12898439	0	+	0.483516	(0.455,0.49]	chr12	1004319	5	UTR3	UTR3:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000550515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	2.09123	3.69757	5.30391	0.00905243	3.12735e-5	0.0574173	6.97306e-4
chr6	17675298	17675368	7619491	0	-	0.442857	(0.42,0.455]	chr6	580614	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	2.57361	3.69756	4.82151	1.30561e-4	1.37132e-7	0.00225508	8.22607e-6
chr5	95755587	95755674	6108096	0	+	0.413793	(0.39,0.42]	chr5	478227	3	CDS	CDS:UTR3:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	2.5823	3.69737	4.81244	0.00246531	1.71008e-7	0.0230262	8.87341e-6
chr16	70282663	70282763	15997203	0	-	0.45	(0.42,0.455]	chr16	1284699	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1:ENST00000675155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	3.51538	3.6973000000000003	3.87922	1.04705e-4	5.28826e-5	0.0020295	0.00107799
chr2	135840834	135840934	2897909	0	-	0.48	(0.455,0.49]	chr2	258481	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.12843	3.69718	4.26593	0.00392855	0.00372962	0.0322851	0.0302984
chr2	235512054	235512154	2443695	0	+	0.46	(0.455,0.49]	chr2	220916	46	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.12843	3.69718	4.26593	0.00392855	0.00372962	0.0322851	0.0302984
chr5	80650574	80650672	6667601	0	-	0.387755	(0.36,0.39]	chr5	514741	6	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	46	458	2	3.2567	3.6971600000000002	4.13762	7.96435e-10	1e-12	9.39322e-8	2.25522e-10
chr17	49409401	49409473	16581196	0	-	0.527778	(0.49,0.53]	chr17	1362372	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1:ENST00000507748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	116	2	3.58926	3.6970650000000003	3.80487	3.32125e-5	1.29725e-8	7.33555e-4	1.06051e-6
chr10	73053510	73053590	11568703	0	-	0.425	(0.42,0.455]	chr10	880493	3	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	13	261	2	2.22242	3.6970099999999997	5.1716	0.001203	1e-12	0.0134762	2.25522e-10
chr5	72220908	72221008	6631321	0	-	0.51	(0.49,0.53]	chr5	512532	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000515226.5:ENST00000513900.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	2.28265	3.69689	5.11113	0.00205195	1.58109e-8	0.0201238	1.14917e-6
chr16	70381491	70381589	15997890	0	-	0.693878	(0.59,1]	chr16	1284763	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.11074	3.69679	5.28284	0.0305	4.04404e-4	0.130204	0.00550292
chr2	11335101	11335201	2513169	0	-	0.49	(0.455,0.49]	chr2	226984	470	INTRON	INTRON	ROCK2	ENSG00000134318.14	ENST00000315872.11:ENST00000616279.4:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.85172	3.6967299999999996	4.54174	0.010864	0.00130137	0.0643837	0.0136936
chr2	189563766	189563858	3082421	0	-	0.478261	(0.455,0.49]	chr2	272317	3	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.85172	3.6967299999999996	4.54174	0.010864	0.00130137	0.0643837	0.0136936
chr8	140525549	140525649	10132098	0	-	0.48	(0.455,0.49]	chr8	760954	55	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.85172	3.6967299999999996	4.54174	0.010864	0.00130137	0.0643837	0.0136936
chr9	35724894	35724959	10639790	0	-	0.476923	(0.455,0.49]	chr9	805172	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.85172	3.6967299999999996	4.54174	0.010864	0.00130137	0.0643837	0.0136936
chrX	48590255	48590287	18692287	0	+	0.46875	(0.455,0.49]	chrX	1594212	1	CDS	CDS:EXON_MRNA	WDR13	ENSG00000101940.18	ENST00000470124.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.85172	3.6967299999999996	4.54174	0.010864	0.00130137	0.0643837	0.0136936
chr4	120055921	120056021	5621422	0	-	0.33	(0.29,0.33]	chr4	448079	4	UTR3	UTR3:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.93737	3.6963549999999996	4.45534	0.00826984	0.00110984	0.0534766	0.0127344
chr6	159778923	159779017	7526943	0	+	0.329787	(0.29,0.33]	chr6	574551	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000472052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.93737	3.6963549999999996	4.45534	0.00826984	0.00110984	0.0534766	0.0127344
chr16	88808114	88808178	15807317	0	+	0.65625	(0.59,1]	chr16	1258139	1	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	3.4902	3.696115	3.90203	0.00130379	1.11836e-5	0.0142445	3.02696e-4
chr11	119023320	119023399	12161714	0	+	0.531646	(0.53,0.59]	chr11	937597	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	TRAPPC4	ENSG00000196655.12	ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000528230.5:ENST00000525079.5:ENST00000533012.1:ENST00000533149.1:ENST00000524797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.35511	3.69608	5.03705	0.0445399	0.00020199200000000001	0.172163	0.00317801
chr20	2467663	2467720	17878996	0	-	0.561404	(0.53,0.59]	chr20	1512846	2	CDS	CDS:UTR3:EXON_MRNA	SNRPB:RP4-734P14.4	ENSG00000125835.19:ENSG00000256566.1	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2:ENST00000461548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.35511	3.69608	5.03705	0.0445399	0.00020199200000000001	0.172163	0.00317801
chr5	10256064	10256153	5874574	0	+	0.505618	(0.49,0.53]	chr5	461861	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000625723.1:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	3.35841	3.695965	4.03352	1.37225e-4	1.50496e-6	0.00253405	5.64695e-5
chrX	55021051	55021125	19084678	0	-	0.527027	(0.49,0.53]	chrX	1623763	1	CDS	CDS:EXON_MRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	3.35841	3.695965	4.03352	1.37225e-4	1.50496e-6	0.00253405	5.64695e-5
chrX	48942204	48942303	19063881	0	-	0.464646	(0.455,0.49]	chrX	1620651	55	INTRON	INTRON	OTUD5	ENSG00000068308.14	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000610466.4:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	3.57525	3.695745	3.81624	5.24878e-4	1.48205e-4	0.00677371	0.00269793
chr1	149538354	149538443	463386	0	+	0.505618	(0.49,0.53]	chr1	46526	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CH17-159N18.5:NBPF19	ENSG00000286185.1:ENSG00000271383.8	ENST00000621744.4:ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr1	150496809	150496908	468170	0	+	0.525253	(0.49,0.53]	chr1	47330	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TARS2	ENSG00000143374.17	ENST00000438568.6:ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369051.7:ENST00000467982.6:ENST00000480070.5:ENST00000463555.1:ENST00000460794.1:ENST00000462578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr11	8983453	8983544	12262353	0	-	0.505495	(0.49,0.53]	chr11	948062	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NRIP3	ENSG00000175352.11	ENST00000309166.8:ENST00000534759.1:ENST00000531142.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr11	61795361	61795461	11971300	0	+	0.53	(0.49,0.53]	chr11	917377	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000535723.1:ENST00000574708.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr12	50130447	50130544	13327655	0	-	0.515464	(0.49,0.53]	chr12	1046435	13	UTR3	UTR3:EXON_MRNA	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000550919.5:ENST00000553122.5:ENST00000547787.5:ENST00000551005.5:ENST00000546406.1:ENST00000550079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr15	34225586	34225658	14860463	0	+	0.527778	(0.49,0.53]	chr15	1166995	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000560911.5:ENST00000557941.1:ENST00000561372.1:ENST00000559078.5:ENST00000558205.5:ENST00000557879.1:ENST00000558102.1:ENST00000559421.1:ENST00000558810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr15	43523953	43524052	14895972	0	+	0.515152	(0.49,0.53]	chr15	1171113	25	CDS	CDS:EXON_MRNA	MAP1A	ENSG00000166963.13	ENST00000382031.5:ENST00000300231.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr16	29384093	29384191	15909056	0	-	0.520408	(0.49,0.53]	chr16	1274086	27	CDS	CDS:EXON_MRNA	NPIPB11	ENSG00000254206.5	ENST00000524087.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr16	30603883	30603978	15915278	0	-	0.505263	(0.49,0.53]	chr16	1275542	15	UTR3	UTR3:EXON_MRNA	ZNF689	ENSG00000156853.13	ENST00000287461.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr16	89429862	89429961	16078633	0	-	0.525253	(0.49,0.53]	chr16	1292257	78	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000613312.4:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr17	1897175	1897271	16084538	0	+	0.510417	(0.49,0.53]	chr17	1293365	1	UTR3	UTR3:EXON_MRNA	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1:ENST00000573994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr19	10154904	10154980	17457983	0	-	0.5	(0.49,0.53]	chr19	1460503	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNMT1	ENSG00000130816.17	ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586799.1:ENST00000585843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr19	10285666	10285761	17224649	0	+	0.515789	(0.49,0.53]	chr19	1418510	5	UTR3	UTR3:EXON_MRNA	ICAM1	ENSG00000090339.9	ENST00000264832.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr2	15179051	15179116	2526236	0	-	0.523077	(0.49,0.53]	chr2	227285	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NBAS	ENSG00000151779.13	ENST00000417461.5:ENST00000281513.10:ENST00000442506.5:ENST00000433283.5:ENST00000485694.1:ENST00000423602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr3	49076776	49076846	4172213	0	-	0.514286	(0.49,0.53]	chr3	350286	2	CDS	CDS:EXON_MRNA	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000411682.1:ENST00000450685.5:ENST00000437939.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr3	198040846	198040945	3993850	0	+	0.515152	(0.49,0.53]	chr3	336723	23	UTR3	UTR3:EXON_MRNA	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000451139.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr5	88721206	88721306	6688806	0	-	0.4	(0.39,0.42]	chr5	515690	42	UTR3	UTR3:EXON_MRNA	MEF2C	ENSG00000081189.16	ENST00000504921.7:ENST00000424173.6:ENST00000340208.9:ENST00000636998.1:ENST00000637481.1:ENST00000625674.2:ENST00000437473.6:ENST00000514028.5:ENST00000625585.2:ENST00000510942.5:ENST00000506554.5:ENST00000637732.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.4030300000000002	3.69564	4.98825	0.00255585	1.62756e-4	0.0234576	0.00266622
chrX	68771707	68771804	18721545	0	+	0.515464	(0.49,0.53]	chrX	1597312	5	EXON_PSEUDO	EXON_PSEUDO	ACTR3P2	ENSG00000232267.1	ENST00000439585.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chrX	101386142	101386224	19151589	0	-	0.52439	(0.49,0.53]	chrX	1628660	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	BTK	ENSG00000010671.16	ENST00000621635.4:ENST00000372880.5:ENST00000308731.8:ENST00000464567.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.44951	3.69564	3.94177	0.0405223	0.0104929	0.153343	0.063428
chr20	41403433	41403530	17966766	0	-	0.298969	(0.29,0.33]	chr20	1522730	15	UTR3	UTR3:EXON_MRNA	CHD6	ENSG00000124177.16	ENST00000373233.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.31653	3.695615	4.0747	0.00577533	0.00261621	0.0417823	0.0238929
chr3	33497834	33497934	4113282	0	-	0.32	(0.29,0.33]	chr3	343701	17	UTR3	UTR3:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000464961.1:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	3.31653	3.695615	4.0747	0.00577533	0.00261621	0.0417823	0.0238929
chr11	9437900	9437974	11792809	0	+	0.337838	(0.33,0.36]	chr11	902918	3	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.15976	3.6956049999999996	4.23145	0.00437542	1.158e-5	0.0340502	3.09867e-4
chr6	31879920	31880001	7663004	0	-	0.617284	(0.59,1]	chr6	585497	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EHMT2	ENSG00000204371.11	ENST00000375537.8:ENST00000375530.8:ENST00000375528.8:ENST00000395728.7:ENST00000480912.5:ENST00000494816.5:ENST00000461880.5:ENST00000478491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	46	2	2.76006	3.69556	4.63106	0.00537945	0.00330486	0.0406564	0.027613
chr5	138566625	138566718	6862470	0	-	0.473118	(0.455,0.49]	chr5	525218	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	115	2	3.42985	3.69502	3.96019	1.45752e-5	9.74848e-9	4.10901e-4	7.60356e-7
chr2	96289302	96289379	2790424	0	-	0.493506	(0.49,0.53]	chr2	248771	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000480615.1:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.59881	3.6948350000000003	4.79086	0.00184545	4.20783e-4	0.0178046	0.00611538
chr19	18386289	18386377	17258375	0	+	0.602273	(0.59,1]	chr19	1425378	1	CDS	CDS:EXON_MRNA:PRIMIRNA	GDF15:MIR3189	ENSG00000130513.6:ENSG00000264175.1	ENST00000595973.2:ENST00000578735.1:ENST00000252809.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	132	2	2.26146	3.6947599999999996	5.12806	0.00467034	1.40673e-7	0.0361714	7.49861e-6
chr12	6869687	6869773	12714942	0	+	0.55814	(0.53,0.59]	chr12	987145	1	CDS	CDS:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000488464.6:ENST00000535434.5:ENST00000493987.5:ENST00000495834.1:ENST00000482209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	87	2	3.17316	3.69471	4.21626	7.8686e-5	4.24424e-7	0.00164157	1.92304e-5
chr11	46744122	46744193	12383481	0	-	0.549296	(0.53,0.59]	chr11	955988	1	CDS	CDS:UTR3:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.45052	3.694675	4.93883	0.00355092	8.67024e-8	0.0300049	4.94425e-6
chr11	66624983	66625082	11991337	0	+	0.606061	(0.59,1]	chr11	922178	8	CDS	CDS:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.84748	3.694655	4.54183	0.0124539	0.0070583	0.0712518	0.0478044
chr17	63833654	63833722	16635139	0	-	0.544118	(0.53,0.59]	chr17	1367728	2	CDS	CDS:EXON_MRNA	SMARCD2	ENSG00000108604.16	ENST00000448276.7:ENST00000613943.4:ENST00000323347.14:ENST00000225742.13:ENST00000450364.3:ENST00000584483.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.38538	3.694655	4.00393	0.0108084	1.18366e-4	0.064368	0.00207204
chr22	23767519	23767593	18448288	0	-	0.851351	(0.59,1]	chr22	1573349	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHCHD10	ENSG00000250479.9	ENST00000484558.3:ENST00000401675.7:ENST00000520222.1:ENST00000517886.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.84748	3.694655	4.54183	0.0124539	0.0070583	0.0712518	0.0478044
chr5	43495072	43495170	6561270	0	-	0.540816	(0.53,0.59]	chr5	508493	1	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	C5orf34:EEF1A1P19	ENSG00000172244.9:ENSG00000249855.1	ENST00000306862.7:ENST00000503655.2:ENST00000513637.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	37	2	3.38538	3.694655	4.00393	0.0108084	1.18366e-4	0.064368	0.00207204
chr6	139373581	139373668	7995339	0	-	0.62069	(0.59,1]	chr6	611350	5	CDS	CDS:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2:ENST00000618718.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.84748	3.694655	4.54183	0.0124539	0.0070583	0.0712518	0.0478044
chr12	76984472	76984570	13426746	0	-	0.408163	(0.39,0.42]	chr12	1056913	5	EXON_PSEUDO	EXON_PSEUDO	RP11-669B18.1	ENSG00000257199.2	ENST00000552481.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	3.44923	3.69449	3.93975	0.0105893	0.00105208	0.0644466	0.0123035
chr4	159275009	159275109	5200024	0	+	0.41	(0.39,0.42]	chr4	419703	64	INTRON	INTRON	RAPGEF2	ENSG00000109756.9	ENST00000644474.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.44923	3.69449	3.93975	0.0105893	0.00105208	0.0644466	0.0123035
chr17	61961683	61961779	16628396	0	-	0.416667	(0.39,0.42]	chr17	1366853	2	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.49701	3.6944850000000002	4.89196	0.0339607	2.62166e-4	0.141431	0.0039188
chr21	37223903	37223999	18244228	0	-	0.395833	(0.39,0.42]	chr21	1547397	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.49701	3.6944850000000002	4.89196	0.0339607	2.62166e-4	0.141431	0.0039188
chr3	123102750	123102796	3706480	0	+	0.391304	(0.39,0.42]	chr3	316798	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5:ENST00000495004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.49701	3.6944850000000002	4.89196	0.0339607	2.62166e-4	0.141431	0.0039188
chr5	134199144	134199204	6844127	0	-	0.416667	(0.39,0.42]	chr5	523673	2	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000472253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.49701	3.6944850000000002	4.89196	0.0339607	2.62166e-4	0.141431	0.0039188
chr3	41233340	41233392	3432554	0	+	0.461538	(0.455,0.49]	chr3	298552	1	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.63872	3.694385	4.75005	0.00510378	2.8854e-7	0.0390492	1.38392e-5
chr4	42086323	42086421	4810587	0	+	0.285714	[0,0.29]	chr4	397073	3	UTR3	UTR3:EXON_MRNA	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12:ENST00000505523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.65703	3.694355	4.73168	0.00320067	3.88478e-4	0.0280721	0.00534839
chrX	30855176	30855272	19012426	0	-	0.447917	(0.42,0.455]	chrX	1617576	12	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.34191	3.694355	5.0468	0.0159091	1.33918e-4	0.0854674	0.00229039
chr19	15397751	15397851	17486392	0	-	0.47	(0.455,0.49]	chr19	1465535	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AKAP8L	ENSG00000011243.19	ENST00000594594.6:ENST00000679638.1:ENST00000595465.6:ENST00000599137.6:ENST00000397410.10:ENST00000609519.5:ENST00000593845.5:ENST00000680649.1:ENST00000596213.6:ENST00000681170.1:ENST00000680703.1:ENST00000680017.1:ENST00000595879.6:ENST00000680303.1:ENST00000679634.1:ENST00000681744.1:ENST00000680803.1:ENST00000681459.1:ENST00000680323.1:ENST00000680774.1:ENST00000680302.1:ENST00000680103.1:ENST00000680642.1:ENST00000681405.1:ENST00000680957.1:ENST00000680865.1:ENST00000680363.1:ENST00000595087.6:ENST00000600065.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	3.46389	3.69426	3.92463	0.0113417	9.14164e-4	0.0665375	0.0110519
chr7	74760024	74760119	8338273	0	+	0.315789	(0.29,0.33]	chr7	635528	6	UTR3	UTR3:EXON_MRNA	GTF2I	ENSG00000263001.7	ENST00000650807.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	63	2	3.09028	3.69411	4.29794	1.51718e-5	2.87452e-7	3.8775e-4	1.54944e-5
chr10	97459361	97459443	11646015	0	-	0.536585	(0.53,0.59]	chr10	887339	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000434538.5:ENST00000495415.5:ENST00000444411.5:ENST00000355839.10:ENST00000327238.14:ENST00000485400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.27113	3.6940999999999997	5.11707	0.0178853	1.35965e-4	0.0918323	0.00231202
chr17	76778252	76778352	16359799	0	+	0.47	(0.455,0.49]	chr17	1328711	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MFSD11	ENSG00000092931.11	ENST00000586622.5:ENST00000588460.5:ENST00000621483.4:ENST00000355954.7:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000585692.5:ENST00000585865.1:ENST00000590070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	3.57525	3.694	3.81275	0.0138827	5.24878e-4	0.0760883	0.00677371
chrX	118281398	118281496	18835284	0	+	0.540816	(0.53,0.59]	chrX	1604780	28	INTRON	INTRON	RP11-197B12.1	ENSG00000270619.1	ENST00000605342.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	185	2	2.24306	3.6938999999999997	5.14474	6.65216e-4	5.44742e-12	0.00867533	1.01631e-9
chr22	39946912	39947009	18372529	0	+	0.56701	(0.53,0.59]	chr22	1563484	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000461082.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.34461	3.6937949999999997	5.04298	0.0457008	1.91383e-4	0.168044	0.0032874
chr19	34400319	34400413	17300570	0	+	0.542553	(0.53,0.59]	chr19	1429897	4	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000647446.1:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	3.05775	3.693735	4.32972	6.94592e-4	7.20871e-6	0.00846751	2.30406e-4
chr12	120214824	120214911	13579833	0	-	0.586207	(0.53,0.59]	chr12	1068842	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9:ENST00000538144.5:ENST00000550795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	25	2	3.38347	3.6937	4.00393	0.0108084	0.00132446	0.064368	0.0138834
chr15	22152275	22152363	15158420	0	-	0.534091	(0.53,0.59]	chr15	1192642	1	EXON_PSEUDO	EXON_PSEUDO	RPS8P10	ENSG00000223877.4	ENST00000460876.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	25	2	3.38347	3.6937	4.00393	0.0108084	0.00132446	0.064368	0.0138834
chr17	7514353	7514441	16105322	0	+	0.545455	(0.53,0.59]	chr17	1296801	3	EXON_LNCRNA	EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6	protein_coding	processed_transcript	protein_coding	processed_transcript	1	25	2	3.38347	3.6937	4.00393	0.0108084	0.00132446	0.064368	0.0138834
chr22	37231931	37231994	18503561	0	-	0.587302	(0.53,0.59]	chr22	1578956	1	CDS	CDS:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11:ENST00000406508.5:ENST00000405484.5:ENST00000441619.5	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	3.38347	3.6937	4.00393	0.0108084	0.00132446	0.064368	0.0138834
chr3	5180524	5180620	3278264	0	+	0.395833	(0.39,0.42]	chr3	288772	19	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.74829	3.6935599999999997	4.63883	8.96426e-4	5.68159e-4	0.0102618	0.0077844
chr3	33088322	33088422	4111885	0	-	0.4	(0.39,0.42]	chr3	343553	107	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.38313	3.6935200000000004	5.00391	0.0128066	9.12714e-5	0.0725185	0.00182992
chr16	30724663	30724762	15631072	0	+	0.636364	(0.59,1]	chr16	1240525	12	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.19052	3.6935000000000002	5.19648	0.0237927	7.35336e-4	0.109413	0.00921643
chr8	124539100	124539186	9593426	0	+	0.744186	(0.59,1]	chr8	727749	1	UTR5	UTR5:EXON_MRNA	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000518008.5:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.19052	3.6935000000000002	5.19648	0.0237927	7.35336e-4	0.109413	0.00921643
chr4	82842395	82842481	5496662	0	-	0.55814	(0.53,0.59]	chr4	440195	4	CDS	CDS:EXON_MRNA:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	192	2	2.4991	3.6934249999999995	4.88775	3.51269e-4	8.05855e-12	0.00533566	1.43663e-9
chr7	129833273	129833371	9061550	0	-	0.346939	(0.33,0.36]	chr7	691964	27	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.2582	3.6933	4.1284	0.00407303	0.00230915	0.0324137	0.0211205
chr4	99071360	99071456	5548211	0	-	0.395833	(0.39,0.42]	chr4	443145	5	UTR3	UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.49426	3.69322	4.89218	0.0085468	1.6518e-4	0.0551026	0.0029267300000000002
chr7	135926857	135926956	9085549	0	-	0.373737	(0.36,0.39]	chr7	693646	2	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	28	315	2	3.3733	3.6931700000000003	4.01304	9.28513e-9	5.28477e-12	7.97128e-7	9.89143e-10
chr17	28573196	28573278	16485909	0	-	0.560976	(0.53,0.59]	chr17	1347737	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	187	2	3.03259	3.6931	4.35361	8.29718e-7	1.04316e-8	3.4056e-5	8.86805e-7
chr1	95148701	95148791	361670	0	+	0.411111	(0.39,0.42]	chr1	35657	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	2.96131	3.69302	4.42473	9.04431e-5	3.06235e-6	0.00167558	1.13887e-4
chr19	58544857	58544937	17413285	0	+	0.8375	(0.59,1]	chr19	1451172	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	3.48719	3.6928	3.89841	1.91539e-4	1.28347e-4	0.00304814	0.00241206
chr2	159767451	159767550	2163232	0	+	0.272727	[0,0.29]	chr2	199224	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.80134	3.69276	4.58418	0.0049344	9.10536e-7	0.0379087	3.69555e-5
chr2	231161424	231161509	2424100	0	+	0.435294	(0.42,0.455]	chr2	218381	2	CDS	CDS:UTR3:EXON_MRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000678261.1:ENST00000678141.1:ENST00000467792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	3.23839	3.69272	4.14705	2.92986e-4	2.1071e-5	0.00464297	5.06044e-4
chr15	52505766	52505862	14936072	0	+	0.46875	(0.455,0.49]	chr15	1174287	7	EXON_PSEUDO	EXON_PSEUDO	EEF1B2P1	ENSG00000231169.4	ENST00000567221.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	2.50904	3.692685	4.87633	0.0310515	2.95855e-4	0.131262	0.00432147
chr7	158656346	158656433	9158758	0	-	0.471264	(0.455,0.49]	chr7	699546	2	CDS	CDS:UTR3:EXON_MRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.50904	3.692685	4.87633	0.0310515	2.95855e-4	0.131262	0.00432147
chr8	30785893	30785986	9782385	0	-	0.333333	(0.33,0.36]	chr8	739783	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP2CB	ENSG00000104695.13	ENST00000523023.1:ENST00000221138.9:ENST00000518564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.55291	3.6924449999999998	4.83198	5.05339e-4	1.88689e-4	0.00657874	0.0032588
chr1	161599673	161599703	501373	0	+	0.366667	(0.36,0.39]	chr1	54331	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000466542.6:ENST00000611236.1:ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript:polymorphic_pseudogene	4	49	2	2.73394	3.6920200000000003	4.6501	0.00131831	5.80078e-7	0.0143836	2.50873e-5
chr1	160291415	160291496	1328683	0	-	0.530864	(0.53,0.59]	chr1	135971	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	2.26097	3.6919899999999997	5.12301	0.00389622	1.2852e-4	0.0313006	0.00241206
chr17	41767512	41767580	16543113	0	-	0.602941	(0.59,1]	chr17	1356301	3	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000420370.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.93698	3.6918450000000003	4.44671	0.00931497	0.0015925	0.0586162	0.0159023
chr10	56357722	56357821	11514049	0	-	0.40404	(0.39,0.42]	chr10	877457	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6:ENST00000460654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.70591	3.6917799999999996	4.67765	0.0185716	7.04737e-4	0.0932453	0.00848325
chr12	110889801	110889900	13087668	0	+	0.414141	(0.39,0.42]	chr12	1020846	52	INTRON	INTRON	CCDC63	ENSG00000173093.13	ENST00000545036.5:ENST00000308208.10:ENST00000552694.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.70591	3.6917799999999996	4.67765	0.0185716	7.04737e-4	0.0932453	0.00848325
chr16	53156575	53156671	15665895	0	+	0.416667	(0.39,0.42]	chr16	1245065	5	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.70591	3.6917799999999996	4.67765	0.0185716	7.04737e-4	0.0932453	0.00848325
chr15	44560261	44560361	14899879	0	+	0.36	(0.33,0.36]	chr15	1171678	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5:ENST00000536248.1:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.86073	3.691695	4.52266	0.0105608	8.34989e-4	0.0644466	0.0102956
chr14	35310739	35310817	14225567	0	+	0.5	(0.49,0.53]	chr14	1113842	1	CDS	CDS:UTR3:EXON_MRNA	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1:ENST00000555050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.4415	3.6916349999999998	3.94177	0.0104929	9.98297e-4	0.063428	0.0111246
chr4	32170170	32170270	4782421	0	+	0.3	(0.29,0.33]	chr4	394829	117	INTRON	INTRON	LINC02506	ENSG00000251129.2	ENST00000660373.1:ENST00000665582.1:ENST00000655951.1:ENST00000667252.1	lncRNA	lncRNA	lncRNA	lncRNA	2	27	2	3.48001	3.6916200000000003	3.90323	0.00126219	9.15815e-5	0.013837	0.00168607
chr11	57738973	57739039	11952420	0	+	0.439394	(0.42,0.455]	chr11	914735	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	54	2	2.68905	3.69149	4.69393	0.00119301	3.8764e-7	0.0128249	1.99378e-5
chr1	212100713	212100806	701690	0	+	0.462366	(0.455,0.49]	chr1	71173	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	3.49033	3.6913400000000003	3.89235	7.92678e-4	9.60445e-5	0.00933379	0.00190731
chr17	7580465	7580525	16105718	0	+	0.566667	(0.53,0.59]	chr17	1296988	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1:ENST00000584180.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	31	2	2.71318	3.6912700000000003	4.66936	0.00340745	0.00103174	0.0283456	0.0121443
chr3	13317390	13317487	4046195	0	-	0.360825	(0.36,0.39]	chr3	339510	13	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	3.34861	3.69111	4.03361	6.18144e-6	1.71457e-6	1.85036e-4	6.95799e-5
chr17	48051546	48051628	16253279	0	+	0.548781	(0.53,0.59]	chr17	1317094	5	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.02054	3.6909349999999996	4.36133	0.00577011	5.91026e-6	0.0426551	1.77972e-4
chr5	69365042	69365141	6625898	0	-	0.353535	(0.33,0.36]	chr5	511949	1	CDS	CDS:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.88494	3.6908700000000003	4.4968	6.89291e-4	2.94972e-8	0.00876781	1.96507e-6
chr4	17803770	17803860	5337598	0	-	0.522222	(0.49,0.53]	chr4	429242	3	CDS	CDS:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.42954	3.69057	3.9516	0.00105489	6.96459e-5	0.0123035	0.0013446
chr16	68294704	68294801	15715804	0	+	0.525773	(0.49,0.53]	chr16	1251169	1	CDS	CDS:UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5:ENST00000567346.5:ENST00000563208.1:ENST00000562863.1:ENST00000567325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.99849	3.6902049999999997	4.38192	0.00630123	0.00259709	0.0445415	0.0229695
chr2	86505011	86505110	2774596	0	-	0.494949	(0.49,0.53]	chr2	246478	17	UTR3	UTR3:EXON_MRNA	CHMP3	ENSG00000115561.16	ENST00000263856.9:ENST00000409727.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.99849	3.6902049999999997	4.38192	0.00630123	0.00259709	0.0445415	0.0229695
chr9	35064153	35064207	10638148	0	-	0.518519	(0.49,0.53]	chr9	804537	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000680520.1:ENST00000681789.1:ENST00000680731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.99849	3.6902049999999997	4.38192	0.00630123	0.00259709	0.0445415	0.0229695
chrX	53565152	53565239	19077523	0	-	0.505747	(0.49,0.53]	chrX	1622801	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.99849	3.6902049999999997	4.38192	0.00630123	0.00259709	0.0445415	0.0229695
chr8	9781263	9781361	9192973	0	+	0.428571	(0.42,0.455]	chr8	702351	47	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.51988	3.69013	4.86038	0.00300574	3.34791e-4	0.0267032	0.00472923
chr1	88982850	88982947	1156831	0	-	0.525773	(0.49,0.53]	chr1	114090	2	CDS	CDS:EXON_MRNA:INTRON	KYAT3:RBMXL1	ENSG00000137944.18:ENSG00000213516.10	ENST00000370491.7:ENST00000446900.6:ENST00000260508.9:ENST00000370486.1:ENST00000321792.5:ENST00000652648.1:ENST00000399794.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.8671	3.69011	4.51312	0.0100489	0.00156636	0.0623334	0.0156889
chr14	105245573	105245672	14800792	0	-	0.494949	(0.49,0.53]	chr14	1160300	31	INTRON	INTRON	BRF1	ENSG00000185024.17	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000379932.8:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7:ENST00000552127.5:ENST00000546417.5:ENST00000550208.1:ENST00000550375.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.8671	3.69011	4.51312	0.0100489	0.00156636	0.0623334	0.0156889
chr7	29650442	29650542	8747378	0	-	0.51	(0.49,0.53]	chr7	667381	512	INTRON	INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	21	2	2.8671	3.69011	4.51312	0.0100489	0.00156636	0.0623334	0.0156889
chrX	141908733	141908833	18883554	0	+	0.52	(0.49,0.53]	chrX	1609000	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.8671	3.69011	4.51312	0.0100489	0.00156636	0.0623334	0.0156889
chr7	100640685	100640778	8952382	0	-	0.634409	(0.59,1]	chr7	684216	1	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000474947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	198	2	3.18023	3.689775	4.19932	5.26028e-5	2.3242e-7	0.00117423	1.15066e-5
chr9	105773980	105774080	10400970	0	+	0.4	(0.39,0.42]	chr9	783700	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.49701	3.6895049999999996	4.882	0.0339607	9.72017e-8	0.141431	5.44683e-6
chr6	83168343	83168442	7817205	0	-	0.333333	(0.33,0.36]	chr6	598698	20	UTR3	UTR3:EXON_MRNA:INTRON	PGM3	ENSG00000013375.16	ENST00000504780.5:ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	3.25033	3.689365	4.1284	0.00407303	4.9864e-5	0.0324137	0.0010249
chr1	149885974	149886069	1287103	0	-	0.494737	(0.49,0.53]	chr1	127851	17	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.38935	3.6893399999999996	4.98933	0.00488689	3.87256e-10	0.0376157	4.52619e-8
chr16	70556885	70556957	15730010	0	+	0.541667	(0.53,0.59]	chr16	1252969	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.51602	3.6891700000000003	4.86232	0.00264912	4.57805e-4	0.024013	0.00608573
chr10	50265170	50265267	11040772	0	+	0.515464	(0.49,0.53]	chr10	841130	3	EXON_PSEUDO	EXON_PSEUDO	DYNC1I2P1	ENSG00000225137.1	ENST00000435916.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	3.25514	3.688885	4.12263	0.00591451	0.00227467	0.0427941	0.0209546
chr17	8174519	8174616	16432068	0	-	0.505155	(0.49,0.53]	chr17	1340310	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM107	ENSG00000179029.15	ENST00000437139.7:ENST00000449985.6:ENST00000532998.5:ENST00000533070.5:ENST00000316425.9:ENST00000431792.2:ENST00000526920.1:ENST00000529756.1:ENST00000417073.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.25514	3.688885	4.12263	0.00591451	0.00227467	0.0427941	0.0209546
chr2	33186875	33186975	1720685	0	+	0.5	(0.49,0.53]	chr2	168662	1	CDS_START	CDS_START:CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000432635.1:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.25514	3.688885	4.12263	0.00591451	0.00227467	0.0427941	0.0209546
chr9	100451350	100451446	10388203	0	+	0.5	(0.49,0.53]	chr9	782662	5	UTR3	UTR3:EXON_MRNA:INTRON	MSANTD3:MSANTD3-TMEFF1	ENSG00000066697.15:ENSG00000251349.3	ENST00000395067.7:ENST00000622639.4:ENST00000613183.1:ENST00000502978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.25514	3.688885	4.12263	0.00591451	0.00227467	0.0427941	0.0209546
chr7	100098139	100098214	8949680	0	-	0.573333	(0.53,0.59]	chr7	683542	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	80	2	2.33084	3.6887600000000003	5.04668	0.00283321	3.63266e-8	0.0252865	2.34568e-6
chr14	20474772	20474860	14171357	0	+	0.556818	(0.53,0.59]	chr14	1109145	1	CDS	CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000557229.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.21941	3.68873	4.15805	0.00680952	0.00266171	0.0468196	0.0240332
chr22	36526021	36526121	18499763	0	-	0.59	(0.53,0.59]	chr22	1578474	1	CDS_START	CDS_START:CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5:ENST00000457241.5:ENST00000432675.4:ENST00000402116.2:ENST00000496875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.21941	3.68873	4.15805	0.00680952	0.00266171	0.0468196	0.0240332
chr1	203711030	203711108	669577	0	+	0.576923	(0.53,0.59]	chr1	67450	3	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.515	3.6886600000000005	4.86232	0.0292633	4.57805e-4	0.129773	0.00608573
chr12	6967956	6968021	13188888	0	-	0.584615	(0.53,0.59]	chr12	1032803	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000545555.2:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.515	3.6886600000000005	4.86232	0.0292633	4.57805e-4	0.129773	0.00608573
chr12	53308959	53309004	13338802	0	-	0.555556	(0.53,0.59]	chr12	1049040	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000550033.5:ENST00000672900.1:ENST00000546393.7:ENST00000546572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.515	3.6886600000000005	4.86232	0.0292633	4.57805e-4	0.129773	0.00608573
chr19	10921049	10921127	17228519	0	+	0.551282	(0.53,0.59]	chr19	1419249	1	CDS	CDS:UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586298.1:ENST00000592516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.515	3.6886600000000005	4.86232	0.0292633	4.57805e-4	0.129773	0.00608573
chr1	1663824	1663922	828565	0	-	0.540816	(0.53,0.59]	chr1	82665	25	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1:ENST00000480991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr1	151067224	151067324	469971	0	+	0.55	(0.53,0.59]	chr1	47852	1	CDS_START	CDS_START:CDS:EXON_MRNA	MLLT11	ENSG00000213190.4	ENST00000368921.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr10	1101957	1102057	10899673	0	+	0.59	(0.53,0.59]	chr10	829481	1	SS3_PROX	SS3_PROX:INTRON	WDR37	ENSG00000047056.16	ENST00000358220.5:ENST00000263150.9:ENST00000650072.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr10	97463857	97463935	11646074	0	-	0.551282	(0.53,0.59]	chr10	887372	1	CDS	CDS:UTR3:EXON_MRNA	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000434538.5:ENST00000495415.5:ENST00000355839.10:ENST00000327238.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr11	57236621	57236715	12393745	0	-	0.56383	(0.53,0.59]	chr11	958429	8	CDS	CDS:EXON_MRNA	APLNR	ENSG00000134817.11	ENST00000257254.3:ENST00000606794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr12	54521118	54521178	12893885	0	+	0.55	(0.53,0.59]	chr12	1003166	1	CDS	CDS:UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr14	21020495	21020577	14519583	0	-	0.536585	(0.53,0.59]	chr14	1137090	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG2	ENSG00000165795.24	ENST00000350792.7:ENST00000298687.9:ENST00000397858.5:ENST00000360463.7:ENST00000397853.7:ENST00000556147.6:ENST00000553503.5:ENST00000555158.5:ENST00000554104.5:ENST00000557633.5:ENST00000556716.5:ENST00000397847.6:ENST00000397851.6:ENST00000554143.5:ENST00000557353.5:ENST00000298684.9:ENST00000397844.6:ENST00000403829.7:ENST00000397856.7:ENST00000553593.5:ENST00000556008.5:ENST00000635386.1:ENST00000556366.5:ENST00000555026.5:ENST00000556974.5:ENST00000554277.5:ENST00000553867.5:ENST00000449431.6:ENST00000555695.5:ENST00000557169.5:ENST00000555869.5:ENST00000557182.5:ENST00000555733.5:ENST00000555384.5:ENST00000554094.5:ENST00000366204.6:ENST00000553741.5:ENST00000557728.5:ENST00000553567.1:ENST00000557305.1:ENST00000557198.5:ENST00000553442.5:ENST00000556420.5:ENST00000553784.5:ENST00000555142.5:ENST00000557149.5:ENST00000555767.5:ENST00000554531.5:ENST00000557264.5:ENST00000557676.5:ENST00000556924.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr17	44558387	44558487	16234956	0	+	0.58	(0.53,0.59]	chr17	1314593	7	CDS	CDS:EXON_MRNA	FZD2	ENSG00000180340.7	ENST00000315323.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr2	217805498	217805597	3184101	0	-	0.555556	(0.53,0.59]	chr2	279596	5	INTRON	INTRON	TNS1	ENSG00000079308.20	ENST00000646520.1:ENST00000171887.8:ENST00000682258.1:ENST00000651849.1:ENST00000446688.5:ENST00000611415.4:ENST00000615025.5:ENST00000490566.1:ENST00000419504.5:ENST00000430930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr5	177091746	177091808	6404994	0	+	0.564516	(0.53,0.59]	chr5	497804	2	CDS	CDS:EXON_MRNA	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000502906.5:ENST00000292408.9:ENST00000393637.5:ENST00000509511.5:ENST00000508139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr5	181321651	181321746	6418593	0	+	0.568421	(0.53,0.59]	chr5	499837	1	EXON_LNCRNA	EXON_LNCRNA	AC138035.2	ENSG00000238035.8	ENST00000499986.8:ENST00000604669.5:ENST00000604354.1	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr6	43640102	43640185	7159478	0	+	0.566265	(0.53,0.59]	chr6	553385	2	CDS	CDS:EXON_MRNA	MAD2L1BP	ENSG00000124688.14	ENST00000451025.6:ENST00000372171.5	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr6	170661126	170661226	7556996	0	+	0.57	(0.53,0.59]	chr6	576995	207	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr7	128653001	128653081	8521072	0	+	0.575	(0.53,0.59]	chr7	650033	3	EXON_PSEUDO	EXON_PSEUDO	RP11-274B21.4	ENSG00000230715.3	ENST00000471258.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr9	131473507	131473579	10498547	0	+	0.569444	(0.53,0.59]	chr9	793544	1	CDS	CDS:EXON_MRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	13	2	3.3733	3.6886150000000004	4.00393	0.0529193	0.0108084	0.18423900000000001	0.064368
chr9	130100628	130100702	10488135	0	+	0.5	(0.49,0.53]	chr9	791947	1	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	74	2	2.87268	3.688305	4.50393	0.00175078	3.34456e-8	0.0180053	2.18513e-6
chr1	67411007	67411107	1079116	0	-	0.26	[0,0.29]	chr1	110137	33	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.59405	3.688085	3.78212	3.32518e-4	3.52755e-5	0.00506816	7.74074e-4
chr21	45486860	45486926	18145666	0	+	0.757576	(0.59,1]	chr21	1539745	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.58138	3.68794	4.7945	0.0031766	0.00235862	0.0279054	0.0215532
chr16	2519267	2519367	15493402	0	+	0.58	(0.53,0.59]	chr16	1227529	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	8	127	2	3.31932	3.687785	4.05625	2.84671e-6	1.33257e-7	9.64791e-5	8.01671e-6
chr13	28678034	28678102	13661289	0	+	0.411765	(0.39,0.42]	chr13	1076745	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.22662	3.68774	4.14886	0.00415881	0.00257296	0.0325842	0.0229363
chr15	50748778	50748870	15277210	0	-	0.413043	(0.39,0.42]	chr15	1205363	2	CDS	CDS:EXON_MRNA	SPPL2A	ENSG00000138600.10	ENST00000261854.10:ENST00000558414.1:ENST00000560288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.22662	3.68774	4.14886	0.00415881	0.00257296	0.0325842	0.0229363
chr5	10380118	10380217	5874965	0	+	0.393939	(0.39,0.42]	chr5	461920	9	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.22662	3.68774	4.14886	0.00415881	0.00257296	0.0325842	0.0229363
chr6	152973045	152973136	8029526	0	-	0.406593	(0.39,0.42]	chr6	614129	1	CDS	CDS:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.22662	3.68774	4.14886	0.00415881	0.00257296	0.0325842	0.0229363
chrX	147801103	147801202	18896007	0	+	0.414141	(0.39,0.42]	chrX	1609210	2	EXON_PSEUDO	EXON_PSEUDO	SLIRPP1	ENSG00000227505.1	ENST00000458303.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	3.22662	3.68774	4.14886	0.00415881	0.00257296	0.0325842	0.0229363
chr5	14652237	14652336	6462533	0	-	0.515152	(0.49,0.53]	chr5	502940	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	63	2	2.46958	3.6871350000000005	4.90469	0.00344146	8.91237e-8	0.0292838	5.05835e-6
chr18	46084578	46084654	17103797	0	-	0.473684	(0.455,0.49]	chr18	1404352	2	CDS	CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000587902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	3.27489	3.687045	4.0992	2.73975e-5	1.06338e-5	6.95757e-4	2.90771e-4
chr13	99539445	99539501	13865410	0	+	0.464286	(0.455,0.49]	chr13	1087176	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.9967	3.686815	4.37693	0.00650423	4.5365e-6	0.0454205	1.42727e-4
chr2	28788657	28788733	1702781	0	+	0.460526	(0.455,0.49]	chr2	167028	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.9967	3.686815	4.37693	0.00650423	4.5365e-6	0.0454205	1.42727e-4
chr1	54225631	54225731	1028111	0	-	0.48	(0.455,0.49]	chr1	106759	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	3.09445	3.6867550000000002	4.27906	6.1765e-4	8.82347e-6	0.00822794	2.48294e-4
chrX	66266871	66266971	18718311	0	+	0.42	(0.39,0.42]	chrX	1597078	3	UTR3	UTR3:EXON_MRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000684071.1:ENST00000684625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	43	2	3.52139	3.68673	3.85207	1.28587e-4	5.10101e-5	0.00241206	0.00104581
chr6	7251591	7251688	7031392	0	+	0.525773	(0.49,0.53]	chr6	538755	28	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.05119	3.68649	5.32179	0.0360743	2.63311e-5	0.145024	6.73425e-4
chr7	56163338	56163435	8290752	0	+	0.587629	(0.53,0.59]	chr7	631577	3	EXON_PSEUDO	EXON_PSEUDO	IFITM3P4	ENSG00000230191.1	ENST00000442064.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	24	2	2.50447	3.68635	4.86823	0.0301162	4.35895e-4	0.130016	0.00623608
chr19	42232098	42232149	17573416	0	-	0.509804	(0.49,0.53]	chr19	1477663	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AC006486.14:GSK3A	ENSG00000288671.1:ENSG00000105723.13	ENST00000678490.1:ENST00000677025.1:ENST00000222330.8:ENST00000398249.8:ENST00000453535.1:ENST00000677702.1:ENST00000493059.1:ENST00000679279.1:ENST00000678692.1:ENST00000678008.1:ENST00000677575.1:ENST00000677897.1:ENST00000677464.1:ENST00000676724.1:ENST00000677469.1:ENST00000678040.1:ENST00000678524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.12684	3.6863150000000005	5.24579	0.0134683	4.073e-5	0.0744999	9.64741e-4
chr1	165907823	165907920	516985	0	+	0.546392	(0.53,0.59]	chr1	55589	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	UCK2:MIR3658	ENSG00000143179.16:ENSG00000283936.1	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5:ENST00000479872.5:ENST00000475333.2:ENST00000636291.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	1	24	2	3.20874	3.686285	4.16383	0.00659193	0.00278422	0.0454205	0.0241009
chr12	132013489	132013576	13160252	0	+	0.574713	(0.53,0.59]	chr12	1028673	1	CDS	CDS:EXON_MRNA	EP400	ENSG00000183495.14	ENST00000389561.7	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.20874	3.686285	4.16383	0.00659193	0.00278422	0.0454205	0.0241009
chr16	30953277	30953370	15632263	0	+	0.548387	(0.53,0.59]	chr16	1240823	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AC135048.13:ORAI3	ENSG00000261487.1:ENSG00000175938.7	ENST00000566056.1:ENST00000562642.1:ENST00000318663.5:ENST00000563161.1:ENST00000566237.1:ENST00000562699.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	24	2	3.20874	3.686285	4.16383	0.00659193	0.00278422	0.0454205	0.0241009
chr2	30259546	30259642	1706804	0	+	0.4375	(0.42,0.455]	chr2	167573	21	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	3.4231	3.6861949999999997	3.94929	0.00112541	2.78395e-6	0.0128481	9.49154e-5
chr9	35707730	35707811	10639566	0	-	0.506173	(0.49,0.53]	chr9	805037	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000495712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.38204	3.68619	4.99034	0.0049129	1.6002e-4	0.0366648	0.00286408
chr18	36796204	36796304	17079095	0	-	0.34	(0.33,0.36]	chr18	1403215	22	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	3.30016	3.68616	4.07216	3.58006e-5	1.48724e-6	7.83575e-4	6.14163e-5
chr12	96979527	96979578	13487521	0	-	0.45098	(0.42,0.455]	chr12	1060758	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000202368.1	ENST00000365498.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	3	48	2	3.62315	3.68587	3.74859	4.234e-4	1.15347e-5	0.00613535	3.09736e-4
chr1	40270050	40270127	152995	0	+	0.324675	(0.29,0.33]	chr1	19157	2	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.73178	3.68576	4.63974	0.00360855	4.81181e-4	0.0296421	0.00677016
chr5	69364942	69365042	6625897	0	-	0.32	(0.29,0.33]	chr5	511948	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.73178	3.68576	4.63974	0.00360855	4.81181e-4	0.0296421	0.00677016
chr6	70394880	70394961	7220342	0	+	0.555556	(0.53,0.59]	chr6	557271	1	EXON_LNCRNA	EXON_LNCRNA	RP11-462G2.1	ENSG00000237643.2	ENST00000671572.1:ENST00000418403.2:ENST00000667898.1	lncRNA	lncRNA	lncRNA	lncRNA	5	77	2	3.2746	3.6856799999999996	4.09676	3.14727e-5	1.13758e-5	7.72298e-4	3.07542e-4
chr1	237943899	237943987	1568959	0	-	0.409091	(0.39,0.42]	chr1	157248	3	UTR3	UTR3:EXON_MRNA	MTRNR2L11	ENSG00000270188.1	ENST00000604646.1	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	3.10925	3.68555	4.26185	4.03163e-5	2.3449e-9	9.6174e-4	2.21286e-7
chr1	231364144	231364242	1548241	0	-	0.336735	(0.33,0.36]	chr1	155129	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.84841	3.685535	4.52266	0.0020676	8.34989e-4	0.0194849	0.0102956
chr11	62888693	62888786	11974498	0	+	0.430108	(0.42,0.455]	chr11	918080	1	UTR3	UTR3:EXON_MRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000542922.5:ENST00000539507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	3.41565	3.6855149999999997	3.95538	6.68846e-5	1.18603e-6	0.00142352	4.61657e-5
chr12	56725262	56725340	13352612	0	-	0.615385	(0.59,1]	chr12	1051869	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	NACA:RP11-112B10.2	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000548563.5:ENST00000546392.6:ENST00000547914.5:ENST00000551775.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	939	2	3.07852	3.68515	4.29178	1.43149e-6	6.51259e-11	5.94314e-5	9.28915e-9
chr7	128771431	128771529	8521871	0	+	0.316327	(0.29,0.33]	chr7	650198	24	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	3.48762	3.684845	3.88207	1.56259e-4	2.18993e-6	0.00282486	7.72993e-5
chrM	673	770	19377145	0	+	0.463918	(0.455,0.49]	chrM	1649798	2	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	1590	18545	2	3.38749	3.684825	3.98216	8.91143e-12	1e-12	1.57022e-9	2.46312e-10
chr1	67686075	67686126	265205	0	+	0.607843	(0.59,1]	chr1	29638	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000460575.1:ENST00000617962.2:ENST00000484245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.9228	3.684755	4.44671	0.00981698	0.00931497	0.0612992	0.0586162
chr15	34495011	34495110	14860723	0	+	0.707071	(0.59,1]	chr15	1167067	7	EXON_PSEUDO	EXON_PSEUDO	FSCN1P1	ENSG00000261559.1	ENST00000568912.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	33	2	2.9228	3.684755	4.44671	0.00981698	0.00931497	0.0612992	0.0586162
chr16	88731773	88731841	16074593	0	-	0.691176	(0.59,1]	chr16	1291704	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.9228	3.684755	4.44671	0.00981698	0.00931497	0.0612992	0.0586162
chr7	130192621	130192688	9063415	0	-	0.447761	(0.42,0.455]	chr7	692185	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	2.79182	3.6845749999999997	4.57733	2.81794e-4	1.70896e-8	0.00451339	1.23244e-6
chr1	53767869	53767969	1025565	0	-	0.34	(0.33,0.36]	chr1	106347	25	UTR3	UTR3:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.53712	3.6845499999999998	4.83198	0.00766322	1.88689e-4	0.0503696	0.0032588
chr19	48999306	48999373	17368164	0	+	0.537313	(0.53,0.59]	chr19	1442270	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000596837.5:ENST00000595090.6:ENST00000595811.5:ENST00000594017.5:ENST00000596247.5:ENST00000598768.1:ENST00000221413.10:ENST00000593570.5:ENST00000640699.1:ENST00000639391.1:ENST00000594338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	3.61294	3.684545	3.75615	0.0310038	2.16536e-4	0.130016	0.00361336
chr6	12514196	12514284	7056029	0	+	0.659091	(0.59,1]	chr6	540326	2	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	111	2	3.47172	3.68451	3.8973	2.15122e-4	2.52527e-5	0.00360503	5.85942e-4
chr1	154582277	154582374	1303539	0	-	0.340206	(0.33,0.36]	chr1	131361	7	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	45	2	2.17012	3.68444	5.19876	0.00108046	2.37278e-5	0.0118355	6.1689e-4
chr13	46126508	46126607	14009605	0	-	0.40404	(0.39,0.42]	chr13	1098488	7	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	3.11435	3.684405	4.25446	1.19537e-5	2.50054e-7	3.18207e-4	1.37736e-5
chr20	62135001	62135094	17859962	0	+	0.451613	(0.42,0.455]	chr20	1509716	10	UTR3	UTR3:EXON_MRNA	LSM14B	ENSG00000149657.20	ENST00000279068.11	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	3.31073	3.68414	4.05755	1.94134e-4	1.23973e-6	0.00332542	4.7999e-5
chr1	26123470	26123569	107851	0	+	0.30303	(0.29,0.33]	chr1	12679	10	UTR3	UTR3:EXON_MRNA	PDIK1L	ENSG00000175087.10	ENST00000619836.4:ENST00000374269.2:ENST00000374271.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.67277	3.6840349999999997	4.6953	0.0255386	4.88271e-4	0.117089	0.00638318
chr17	67743859	67743924	16332078	0	+	0.307692	(0.29,0.33]	chr17	1324903	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000583108.5:ENST00000583021.1:ENST00000584032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.67277	3.6840349999999997	4.6953	0.0255386	4.88271e-4	0.117089	0.00638318
chr11	112094887	112094970	12136342	0	+	0.46988	(0.455,0.49]	chr11	934906	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.24913	3.6838450000000003	4.1185600000000004	0.00239443	2.49433e-5	0.0225356	5.8178e-4
chr5	151797370	151797428	6299687	0	+	0.5	(0.49,0.53]	chr5	491926	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000678500.1:ENST00000679135.1:ENST00000679207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.60653	3.68376	3.76099	4.50981e-4	2.00194e-4	0.00605268	0.0034021
chr2	202207057	202207154	3127220	0	-	0.350515	(0.33,0.36]	chr2	276434	10	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUMO1	ENSG00000116030.17	ENST00000392246.7:ENST00000392245.5:ENST00000409368.5:ENST00000392244.7:ENST00000409712.5:ENST00000409181.1:ENST00000409498.6:ENST00000409205.5:ENST00000409627.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	3.15976	3.6836599999999997	4.20756	0.00437542	0.00386591	0.0340502	0.0310764
chr7	133545007	133545107	8540322	0	+	0.34	(0.33,0.36]	chr7	651930	610	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	3.15976	3.6836599999999997	4.20756	0.00437542	0.00386591	0.0340502	0.0310764
chr7	75888077	75888163	8341279	0	+	0.709302	(0.59,1]	chr7	636082	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHBDD2	ENSG00000005486.17	ENST00000318622.8:ENST00000454791.1:ENST00000006777.11:ENST00000468304.1:ENST00000428119.1:ENST00000467406.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	35	2	3.24972	3.68322	4.11672	0.0222273	0.00314037	0.105595	0.0264943
chr1	19124540	19124615	876135	0	-	0.44	(0.42,0.455]	chr1	90077	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000475973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	3.455	3.68316	3.91132	1.25169e-5	3.67157e-6	3.63117e-4	1.1967e-4
chr1	70432158	70432235	281456	0	+	0.402597	(0.39,0.42]	chr1	30294	2	CDS	CDS:EXON_MRNA	CTH	ENSG00000116761.12	ENST00000411986.6:ENST00000370938.8:ENST00000346806.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.4261	3.68303	3.93996	0.00841622	0.00107164	0.054565	0.0118238
chr12	108658828	108658919	13530623	0	-	0.406593	(0.39,0.42]	chr12	1063971	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552030.5:ENST00000552871.5:ENST00000547294.5:ENST00000550032.5:ENST00000551550.5:ENST00000546571.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.4261	3.68303	3.93996	0.00841622	0.00107164	0.054565	0.0118238
chr13	98002950	98003037	13859075	0	+	0.390805	(0.39,0.42]	chr13	1086672	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5:ENST00000479736.1:ENST00000493492.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.4261	3.68303	3.93996	0.00841622	0.00107164	0.054565	0.0118238
chr16	9116912	9117010	15534301	0	+	0.418367	(0.39,0.42]	chr16	1230416	1	UTR3	UTR3:EXON_MRNA	C16orf72	ENSG00000182831.12	ENST00000327827.12	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.4261	3.68303	3.93996	0.00841622	0.00107164	0.054565	0.0118238
chr11	203715	203814	12225501	0	-	0.565657	(0.53,0.59]	chr11	943038	9	UTR3	UTR3:EXON_MRNA:INTRON	BET1L	ENSG00000177951.17	ENST00000410108.5:ENST00000325147.13:ENST00000382762.7	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.05775	3.6827550000000002	4.30776	0.00407289	6.94592e-4	0.0324137	0.00846751
chr17	32936389	32936447	16202195	0	+	0.568965	(0.53,0.59]	chr17	1308373	2	CDS	CDS:EXON_MRNA	TMEM98	ENSG00000006042.12	ENST00000394642.7:ENST00000395149.6:ENST00000261713.8:ENST00000579849.6:ENST00000578289.5:ENST00000439138.5:ENST00000583120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.05775	3.6827550000000002	4.30776	0.00407289	6.94592e-4	0.0324137	0.00846751
chr2	61481184	61481281	2690370	0	-	0.350515	(0.33,0.36]	chr2	240323	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.3227	3.682675	4.04265	0.00222616	3.90477e-5	0.0211992	8.43777e-4
chr11	5301571	5301662	12241102	0	-	0.428571	(0.42,0.455]	chr11	946134	6	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.96859	3.6826749999999997	4.39676	2.9375e-4	8.14648e-8	0.00465315	4.6939e-6
chr12	108646504	108646604	13530488	0	-	0.35	(0.33,0.36]	chr12	1063929	15	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5	protein_coding	protein_coding	protein_coding	protein_coding	9	81	2	2.98625	3.68237	4.37849	6.85391e-6	1.08837e-7	2.02473e-4	6.77188e-6
chr12	94971539	94971593	13477833	0	-	0.407407	(0.39,0.42]	chr12	1059730	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000684522.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000538372.7:ENST00000547986.5:ENST00000546788.1:ENST00000550187.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	47	2	2.74243	3.6823550000000003	4.62228	0.00369167	7.53778e-7	0.030936	3.14118e-5
chr8	144792312	144792403	10150958	0	-	0.626374	(0.59,1]	chr8	764134	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RPL8:MIR6850	ENSG00000161016.18:ENSG00000283764.1	ENST00000529163.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000262584.7:ENST00000532702.1:ENST00000525232.5:ENST00000612162.1:ENST00000531767.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	48	1302	2	3.13834	3.6823300000000003	4.22632	3.72165e-7	4.95931e-11	1.92638e-5	7.2974e-9
chr4	105485586	105485684	5026467	0	+	0.479592	(0.455,0.49]	chr4	409127	10	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	217	2	3.47521	3.68231	3.88941	7.03548e-9	4.97476e-9	5.72423e-7	4.59166e-7
chr18	39334871	39334960	17084560	0	-	0.52809	(0.49,0.53]	chr18	1403466	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	MIR924HG:RPL7AP66	ENSG00000267374.2:ENSG00000175886.10	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000664913.1:ENST00000591469.1:ENST00000654837.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000667701.1:ENST00000652839.1:ENST00000663244.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000666091.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000588490.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	57	2	3.23006	3.68213	4.1342	0.00253719	6.96953e-7	0.0233955	2.93629e-5
chr7	143858823	143858907	9116801	0	-	0.464286	(0.455,0.49]	chr7	696334	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.30139	3.682105	5.06282	0.0530131	1.16789e-4	0.195536	0.0020505
chr20	35280741	35280829	17952429	0	-	0.568182	(0.53,0.59]	chr20	1520671	2	CDS	CDS:EXON_MRNA:INTRON	EIF6	ENSG00000242372.9	ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8:ENST00000415116.1:ENST00000462894.1:ENST00000456600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.80766	3.68203	4.5564	2.30272e-4	1.54434e-6	0.00382267	5.75816e-5
chr10	99403798	99403874	11657490	0	-	0.552632	(0.53,0.59]	chr10	888031	2	CDS	CDS:EXON_MRNA	GOT1	ENSG00000120053.12	ENST00000370508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	3.61856	3.68199	3.74542	0.0303021	2.30148e-4	0.129773	0.00352524
chr5	138419138	138419232	6244479	0	+	0.553191	(0.53,0.59]	chr5	486550	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000508386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	28	2	3.61856	3.68199	3.74542	0.0303021	2.30148e-4	0.129773	0.00352524
chr17	7497722	7497796	16105117	0	+	0.581081	(0.53,0.59]	chr17	1296712	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1:ENST00000576952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	3.5393	3.681685	3.82407	0.0179666	6.46017e-4	0.0918323	0.00799743
chr17	57105658	57105753	16282589	0	+	0.589474	(0.53,0.59]	chr17	1320626	2	CDS	CDS:EXON_MRNA	AKAP1	ENSG00000121057.13	ENST00000575322.1:ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572814.1:ENST00000574683.1:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000576591.1:ENST00000314126.4:ENST00000572156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.5393	3.681685	3.82407	0.0179666	6.46017e-4	0.0918323	0.00799743
chr3	14132545	14132595	3319388	0	+	0.54	(0.53,0.59]	chr3	292061	1	CDS	CDS:UTR3:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000432444.1:ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	3.5393	3.681685	3.82407	0.0179666	6.46017e-4	0.0918323	0.00799743
chr13	39013979	39014079	13976238	0	-	0.48	(0.455,0.49]	chr13	1096566	14	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	3.38471	3.6816500000000003	3.97859	2.00074e-5	2.2191e-6	5.35199e-4	7.82023e-5
chr1	95193253	95193352	362119	0	+	0.30303	(0.29,0.33]	chr1	35683	15	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.83055	3.681535	5.53252	0.0348758	4.41551e-6	0.144642	1.39924e-4
chr1	155293437	155293513	1307567	0	-	0.592105	(0.59,1]	chr1	132205	1	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.1277	3.6814999999999998	4.2353	0.0165254	0.00490589	0.0873033	0.0366648
chr7	139079958	139080053	9102393	0	-	0.610526	(0.59,1]	chr7	694570	10	CDS	CDS:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.1277	3.6814999999999998	4.2353	0.0165254	0.00490589	0.0873033	0.0366648
chr1	150511737	150511831	468342	0	+	0.606383	(0.59,1]	chr1	47402	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.9891200000000002	3.6811750000000005	4.37323	0.00990413	0.00823979	0.061536	0.0540283
chr7	97855405	97855459	8940644	0	-	0.351852	(0.33,0.36]	chr7	682247	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	47	2	3.52634	3.6811	3.83586	1.7178e-4	7.28639e-6	0.00302124	2.13219e-4
chr10	119677461	119677550	11284636	0	+	0.41573	(0.39,0.42]	chr10	859742	3	UTR3	UTR3:EXON_MRNA	BAG3	ENSG00000151929.10	ENST00000369085.8	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.86895	3.681095	4.49324	0.00177945	0.00108192	0.0172974	0.0124943
chr16	56407963	56408039	15959458	0	-	0.618421	(0.59,1]	chr16	1279940	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000565445.5:ENST00000563664.1:ENST00000568657.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	3.51608	3.680825	3.84557	0.0410704	0.00108676	0.163285	0.0118659
chr4	3520071	3520132	5285723	0	-	0.622951	(0.59,1]	chr4	425824	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	3.51608	3.680825	3.84557	0.0410704	0.00108676	0.163285	0.0118659
chr9	131260722	131260821	10870364	0	-	0.434343	(0.42,0.455]	chr9	824566	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4:ENST00000464831.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.83395	3.6808050000000003	4.52766	6.25227e-4	1.58778e-6	0.00830005	5.89925e-5
chr17	28670409	28670508	16176874	0	+	0.373737	(0.36,0.39]	chr17	1305302	77	INTRON	INTRON	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.53529	3.68071	3.82613	1.39565e-4	6.0978e-5	0.0023599	0.00132411
chr16	18506872	18506932	15876336	0	-	0.433333	(0.42,0.455]	chr16	1269086	1	CDS	CDS:EXON_MRNA:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.7523	3.68063	4.60896	0.0153283	8.72604e-7	0.0828908	3.55816e-5
chr3	48468173	48468267	4167340	0	-	0.37234	(0.36,0.39]	chr3	348993	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	3.28565	3.6805450000000004	4.07544	3.61377e-5	3.2454e-6	8.73633e-4	1.07876e-4
chr18	6462626	6462721	17007688	0	-	0.505263	(0.49,0.53]	chr18	1397496	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	57	2	3.10321	3.680215	4.25722	1.1948e-4	1.00699e-5	0.00208475	3.03291e-4
chr4	56478440	56478503	4848894	0	+	0.380952	(0.36,0.39]	chr4	399508	2	CDS	CDS:EXON_MRNA:INTRON	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.66836	3.67999	5.69162	0.0474647	2.15744e-6	0.17993	7.62296e-5
chr11	118756259	118756323	12625496	0	-	0.40625	(0.39,0.42]	chr11	979540	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	3.05461	3.6799549999999996	4.3053	8.55091e-4	7.30538e-6	0.0105173	2.13219e-4
chr17	49055455	49055553	16256701	0	+	0.530612	(0.53,0.59]	chr17	1317683	62	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.69635	3.679915	4.66348	0.00112127	0.00107799	0.0128408	0.0118238
chr6	28903292	28903389	7652685	0	-	0.443299	(0.42,0.455]	chr6	583182	4	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.81175	3.679835	4.54792	0.00227654	9.66045e-4	0.0209546	0.0115185
chr1	42931125	42931206	967031	0	-	0.604938	(0.59,1]	chr1	101891	2	CDS	CDS:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	89	2	3.18974	3.6797500000000003	4.16976	5.51091e-4	4.80088e-5	0.00760492	9.91058e-4
chr9	37277967	37278067	10254424	0	+	0.26	[0,0.29]	chr9	771611	911	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	3.48114	3.679745	3.87835	1.59721e-4	1.0775e-4	0.00286408	0.00192514
chr16	58722187	58722278	15967778	0	-	0.505495	(0.49,0.53]	chr16	1281442	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5:ENST00000496461.5:ENST00000568368.1:ENST00000492378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.60476	3.6796800000000003	3.7546	4.52633e-4	2.09468e-4	0.00642319	0.00327655
chr19	49682195	49682259	17372086	0	+	0.453125	(0.42,0.455]	chr19	1443518	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	PRMT1:MIR5088	ENSG00000126457.22:ENSG00000274306.1	ENST00000529284.5:ENST00000532489.5:ENST00000527382.5:ENST00000534465.6:ENST00000610806.4:ENST00000391851.8:ENST00000534280.5:ENST00000534676.5:ENST00000454376.7:ENST00000525616.1:ENST00000524771.5:ENST00000529836.5:ENST00000526224.5:ENST00000527412.1:ENST00000615402.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	20	2	2.81137	3.6796450000000003	4.54792	0.0120386	9.66045e-4	0.0700876	0.0115185
chr7	56063012	56063085	8290555	0	+	0.452055	(0.42,0.455]	chr7	631522	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000462133.5:ENST00000494736.1:ENST00000466479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.81137	3.6796450000000003	4.54792	0.0120386	9.66045e-4	0.0700876	0.0115185
chr2	222634390	222634465	3197035	0	-	0.373333	(0.36,0.39]	chr2	281722	1	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.62565	3.6795549999999997	4.73346	0.0219469	3.2963e-4	0.103959	0.00504024
chr19	46775150	46775240	17595456	0	-	0.655556	(0.59,1]	chr19	1481382	4	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	1.72824	3.679545	5.63085	0.0471232	8.43355e-5	0.179872	0.0015859
chr6	4115873	4115973	7575707	0	-	0.39	(0.36,0.39]	chr6	578118	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000464583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	3.36872	3.67936	3.99	1.31092e-4	6.1616e-5	0.00226268	0.00133408
chr17	1344759	1344856	16398373	0	-	0.474227	(0.455,0.49]	chr17	1334230	6	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	84	2	2.77609	3.67917	4.58225	2.98403e-4	1.58006e-8	0.00471684	1.14917e-6
chr12	98601170	98601225	13036975	0	+	0.436364	(0.42,0.455]	chr12	1015022	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1:ENST00000547869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	112	2	3.1365	3.679115	4.22173	1.14069e-6	3.16136e-7	4.47151e-5	1.68021e-5
chr11	66364263	66364363	12424284	0	-	0.56	(0.53,0.59]	chr11	964619	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	3.5393	3.67905	3.8188	6.46017e-4	1.54941e-4	0.00799743	0.0028049
chr5	139627089	139627185	6250571	0	+	0.458333	(0.455,0.49]	chr5	487112	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D2	ENSG00000131508.16	ENST00000398733.8:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.12994	3.67894	5.22794	0.0304832	4.80556e-5	0.130204	9.91058e-4
chr3	12841487	12841582	4042211	0	-	0.631579	(0.59,1]	chr3	339360	12	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	101	2619	2	3.54842	3.678635	3.80885	6.9754e-9	3.38346e-10	6.22372e-7	4.01234e-8
chr1	153960197	153960295	1300328	0	-	0.571429	(0.53,0.59]	chr1	130745	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.8006	3.6785	4.5564	0.00233666	1.54434e-6	0.0221314	5.75816e-5
chr12	16363941	16364041	12753016	0	+	0.4	(0.39,0.42]	chr12	991385	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MGST1	ENSG00000008394.13	ENST00000010404.6:ENST00000396210.8:ENST00000543076.5:ENST00000539036.5:ENST00000542256.5:ENST00000539708.5:ENST00000535309.5:ENST00000396209.5:ENST00000540056.5:ENST00000396207.1:ENST00000538857.1:ENST00000535624.1:ENST00000624056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:TEC:processed_transcript	1	19	2	2.86368	3.6784600000000003	4.49324	0.0101619	0.00108192	0.0627153	0.0124943
chr18	12326421	12326518	16762286	0	+	0.402062	(0.39,0.42]	chr18	1382540	4	UTR3	UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000590967.5:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.86368	3.6784600000000003	4.49324	0.0101619	0.00108192	0.0627153	0.0124943
chr2	171726853	171726916	2207855	0	+	0.412698	(0.39,0.42]	chr2	202073	2	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000435234.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.86368	3.6784600000000003	4.49324	0.0101619	0.00108192	0.0627153	0.0124943
chr6	69749340	69749400	7788507	0	-	0.4	(0.39,0.42]	chr6	596391	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000649970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.86368	3.6784600000000003	4.49324	0.0101619	0.00108192	0.0627153	0.0124943
chr11	46428652	46428751	12381378	0	-	0.585859	(0.53,0.59]	chr11	955794	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	AMBRA1:RP11-425L10.1	ENSG00000110497.15:ENSG00000244313.3	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000467930.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	16	205	2	3.05798	3.6784100000000004	4.29884	3.47843e-7	1.69107e-8	1.62154e-5	1.3329e-6
chr19	44909150	44909250	17349680	0	+	0.69	(0.59,1]	chr19	1439243	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000252486.9	protein_coding	protein_coding	protein_coding	protein_coding	7	193	2	3.51401	3.67826	3.84251	7.25149e-6	2.55776e-6	2.31597e-4	8.84046e-5
chr12	6983431	6983485	13189017	0	-	0.388889	(0.36,0.39]	chr12	1032872	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5:ENST00000540090.5:ENST00000543794.5:ENST00000536797.5:ENST00000536971.1:ENST00000545459.5:ENST00000538910.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.93136	3.6781949999999997	4.42503	0.00811967	0.00133228	0.0528637	0.0144372
chr5	17353787	17353880	6473541	0	-	0.516129	(0.49,0.53]	chr5	503559	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	FTH1P10	ENSG00000223361.5	ENST00000401830.3:ENST00000430907.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	16	200	2	3.22983	3.67814	4.12645	1.19143e-7	1.87204e-9	6.5009e-6	1.96887e-7
chr2	241229600	241229687	3250549	0	-	0.586207	(0.53,0.59]	chr2	286984	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000484412.1:ENST00000442730.1:ENST00000494862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	58	2	3.55001	3.6780549999999996	3.8061	6.11776e-4	8.37944e-6	0.00818575	2.38248e-4
chr20	44942912	44943010	17984309	0	-	0.479592	(0.455,0.49]	chr20	1523586	9	UTR3	UTR3:EXON_MRNA	TOMM34	ENSG00000025772.8	ENST00000372813.4	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.12843	3.677975	4.22752	0.00392855	1.24055e-5	0.0322851	3.28918e-4
chr14	20801948	20801968	14518862	0	-	0.5	(0.49,0.53]	chr14	1136983	1	CDS	CDS:UTR5:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.72252	3.67795	4.63338	0.0161474	9.56909e-4	0.0860154	0.010724
chr2	206146902	206146995	3133200	0	-	0.505376	(0.49,0.53]	chr2	277012	1	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.72252	3.67795	4.63338	0.0161474	9.56909e-4	0.0860154	0.010724
chr12	56042513	56042602	12897640	0	+	0.494382	(0.49,0.53]	chr12	1003977	2	CDS	CDS:EXON_MRNA	RPS26	ENSG00000197728.11	ENST00000356464.10:ENST00000552361.1:ENST00000646449.2:ENST00000548590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.6129	3.67787	4.74284	0.0052746	2.96405e-7	0.0389109	1.59277e-5
chr1	27405614	27405713	908759	0	-	0.555556	(0.53,0.59]	chr1	95011	15	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	3.1611	3.6777999999999995	4.1945	8.49658e-5	1.72205e-5	0.00159594	4.72777e-4
chr11	66003772	66003866	11987300	0	+	0.553191	(0.53,0.59]	chr11	921245	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BANF1	ENSG00000175334.8	ENST00000445560.6:ENST00000524628.1:ENST00000312175.7:ENST00000533166.5:ENST00000527348.1:ENST00000528648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	3.1611	3.6777999999999995	4.1945	8.49658e-5	1.72205e-5	0.00159594	4.72777e-4
chr2	152676404	152676497	2944263	0	-	0.397849	(0.39,0.42]	chr2	261614	1	CDS	CDS:UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000354363.11:ENST00000545856.7:ENST00000493468.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	3.32811	3.6774899999999997	4.02687	0.00182819	4.35816e-5	0.0183913	0.00091744700000000005
chr4	98887888	98887952	5547758	0	-	0.375	(0.36,0.39]	chr4	443099	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000505194.5:ENST00000507665.5:ENST00000505829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.76749	3.67748	4.58747	0.00287858	6.55819e-4	0.0247002	0.00860229
chr5	138506670	138506766	6861942	0	-	0.385417	(0.36,0.39]	chr5	525116	7	UTR3	UTR3:EXON_MRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.76749	3.67748	4.58747	0.00287858	6.55819e-4	0.0247002	0.00860229
chr14	22956949	22957029	14528123	0	-	0.7625	(0.59,1]	chr14	1138245	1	EXON_SMALL	EXON_SMALL:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	HAUS4:RP11-298I3.5:MIR4707	ENSG00000092036.19:ENSG00000259132.1:ENSG00000284118.1	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555074.1:ENST00000555986.5:ENST00000555040.5:ENST00000556915.5:ENST00000554349.5:ENST00000553794.5:ENST00000554651.5:ENST00000554516.5:ENST00000557591.5:ENST00000554406.1:ENST00000579686.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:processed_transcript:primary_miRNA	1	33	2	2.61074	3.67726	4.74378	0.025486	0.00312942	0.117089	0.0264364
chr16	21599645	21599733	15585033	0	+	0.852273	(0.59,1]	chr16	1235166	2	UTR5	UTR5:EXON_MRNA:INTRON	METTL9	ENSG00000197006.14	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000562379.1:ENST00000570074.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	2.61074	3.67726	4.74378	0.025486	0.00312942	0.117089	0.0264364
chr22	19041057	19041136	18430073	0	-	0.670886	(0.59,1]	chr22	1570347	1	CDS	CDS:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.61074	3.67726	4.74378	0.025486	0.00312942	0.117089	0.0264364
chr9	128994372	128994442	10482714	0	+	0.457143	(0.455,0.49]	chr9	791119	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000467044.1:ENST00000485158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.24913	3.67724	4.10535	0.0064531	0.00239443	0.0450905	0.0225356
chrX	120211738	120211826	19195132	0	-	0.465909	(0.455,0.49]	chrX	1631873	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	NKAPP1:EEF1A1P30	ENSG00000233382.7:ENSG00000237757.2	ENST00000555168.1:ENST00000554109.1:ENST00000429708.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	1	20	2	3.24913	3.67724	4.10535	0.0064531	0.00239443	0.0450905	0.0225356
chr7	2355120	2355220	8096080	0	+	0.82	(0.59,1]	chr7	618845	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3B	ENSG00000106263.18	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.69477	3.677225	4.65968	0.020208	0.00413632	0.0978331	0.0324998
chr7	158733038	158733135	9159298	0	-	0.659794	(0.59,1]	chr7	699685	22	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.69477	3.677225	4.65968	0.020208	0.00413632	0.0978331	0.0324998
chr16	56608655	56608683	15679094	0	+	0.678571	(0.59,1]	chr16	1246416	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MT2A	ENSG00000125148.7	ENST00000245185.6:ENST00000563985.1:ENST00000562017.1:ENST00000561491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	90	2	3.56757	3.677165	3.78676	3.60514e-4	7.48524e-5	0.00544284	0.00142695
chr3	125446837	125446931	4426808	0	-	0.244681	[0,0.29]	chr3	367558	3	UTR3	UTR3:EXON_MRNA	SNX4	ENSG00000114520.11	ENST00000251775.9	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	3.48114	3.677125	3.87311	1.59721e-4	5.02275e-6	0.00286408	1.55529e-4
chr19	11128007	11128085	17230267	0	+	0.589744	(0.53,0.59]	chr19	1419627	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	131	2	3.45186	3.67707	3.90228	3.12608e-6	8.71276e-8	1.15746e-4	4.96645e-6
chr5	126811772	126811835	6202593	0	+	0.444444	(0.42,0.455]	chr5	483188	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	50	2	2.70611	3.677035	4.64796	0.00397496	6.51077e-7	0.0322851	2.77961e-5
chr13	46152862	46152945	14009881	0	-	0.554217	(0.53,0.59]	chr13	1098552	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5:ENST00000494531.1:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.11275	3.67687	4.24099	0.00407571	1.28258e-5	0.032143	3.70041e-4
chr3	39410917	39410999	3423825	0	+	0.47561	(0.455,0.49]	chr3	298005	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	43	509	2	3.47518	3.676705	3.87823	3.50086e-10	5.99787e-12	4.13469e-8	1.20345e-9
chr19	49683997	49684069	17372106	0	+	0.583333	(0.53,0.59]	chr19	1443524	2	CDS	CDS:UTR3:EXON_MRNA	PRMT1	ENSG00000126457.22	ENST00000529284.5:ENST00000532489.5:ENST00000527382.5:ENST00000534465.6:ENST00000610806.4:ENST00000391851.8:ENST00000534280.5:ENST00000534676.5:ENST00000454376.7:ENST00000525616.1:ENST00000524771.5:ENST00000526224.5:ENST00000529650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.86102	3.67666	4.4923	0.0017805	2.39218e-6	0.0172974	9.1799e-5
chr10	97431044	97431135	11212374	0	+	0.538462	(0.53,0.59]	chr10	852973	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.16037	3.6766249999999996	5.19288	0.0254312	9.22873e-5	0.117089	0.0016906
chr2	96279504	96279559	2790306	0	-	0.563636	(0.53,0.59]	chr2	248717	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000484372.1:ENST00000493271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.16037	3.6766249999999996	5.19288	0.0254312	9.22873e-5	0.117089	0.0016906
chr8	102651421	102651513	9984338	0	-	0.619565	(0.59,1]	chr8	753410	4	CDS	CDS:EXON_MRNA	KLF10	ENSG00000155090.15	ENST00000285407.11:ENST00000395884.3	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.55837	3.676435	4.7945	0.00709491	0.0031766	0.0479177	0.0279054
chr1	6224082	6224182	842573	0	-	0.34	(0.33,0.36]	chr1	84936	30	UTR3	UTR3:EXON_MRNA	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.77416	3.676425	4.57869	8.34192e-4	1.14009e-6	0.00978328	4.91686e-5
chr1	89582944	89583041	345882	0	+	0.474227	(0.455,0.49]	chr1	34046	3	CDS	CDS:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr1	156294458	156294525	1313992	0	-	0.462687	(0.455,0.49]	chr1	133381	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	GLMP	ENSG00000198715.13	ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000476177.6:ENST00000497955.1:ENST00000368264.1:ENST00000479084.1:ENST00000484214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr10	73769835	73769925	11115865	0	+	0.488889	(0.455,0.49]	chr10	845920	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000496827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr17	40389618	40389647	16538737	0	-	0.482759	(0.455,0.49]	chr17	1354549	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000578412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr19	47229242	47229341	17596401	0	-	0.484848	(0.455,0.49]	chr19	1481601	4	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr19	57291748	57291843	17405777	0	+	0.473684	(0.455,0.49]	chr19	1450090	12	CDS	CDS:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr2	101266676	101266743	1957398	0	+	0.477612	(0.455,0.49]	chr2	185959	1	CDS	CDS:EXON_MRNA	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000462489.1:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.69053	3.6763149999999998	4.6621	0.0182983	7.84472e-4	0.0925808	0.00927662
chr11	61313498	61313567	12404032	0	-	0.449275	(0.42,0.455]	chr11	960216	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	3.16223	3.676265	4.1903	4.45084e-4	4.41719e-7	0.00633715	1.99209e-5
chr3	72929043	72929134	3555312	0	+	0.637363	(0.59,1]	chr3	308958	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	GXYLT2:FTH1P23	ENSG00000172986.13:ENSG00000242960.1	ENST00000389617.9:ENST00000498315.1:ENST00000492727.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	6	186	2	3.28558	3.676265	4.06695	3.5027e-4	1.42011e-7	0.00532165	7.56416e-6
chr19	16132801	16132897	17247590	0	+	0.427083	(0.42,0.455]	chr19	1423028	6	UTR3	UTR3:EXON_MRNA	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.70611	3.6761749999999997	4.64624	0.00397496	8.75333e-4	0.0322851	0.0101169
chrX	71240616	71240716	19106939	0	-	0.53	(0.49,0.53]	chrX	1625381	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.45798	3.676015	4.89405	0.00353238	2.57983e-4	0.029076	0.00419998
chrX	141907703	141907803	18883543	0	+	0.54	(0.53,0.59]	chrX	1608997	24	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.23406	3.6755649999999997	5.11707	0.00870728	1.35965e-4	0.0558165	0.00231202
chr12	14942324	14942422	13221742	0	-	0.489796	(0.455,0.49]	chr12	1036862	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGDIB	ENSG00000111348.9	ENST00000228945.9:ENST00000536592.5:ENST00000541644.5:ENST00000539131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.10347	3.6753549999999997	5.24724	0.0313707	3.09759e-5	0.13127	7.62166e-4
chr16	85805772	85805872	15798364	0	+	0.56	(0.53,0.59]	chr16	1257152	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COX4I1	ENSG00000131143.10	ENST00000568339.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000561569.5:ENST00000566405.5:ENST00000564544.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	127	2	3.53333	3.67535	3.81737	8.97065e-7	5.30972e-7	4.03386e-5	2.33308e-5
chr15	88907194	88907285	15434369	0	-	0.637363	(0.59,1]	chr15	1220415	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000542878.5:ENST00000558029.5:ENST00000559997.5:ENST00000558352.5:ENST00000559770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	122	2	3.05313	3.67528	4.29743	9.44977e-5	2.81132e-5	0.00172285	7.10133e-4
chr10	70424336	70424435	11100474	0	+	0.363636	(0.36,0.39]	chr10	844350	27	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.63115	3.675205	4.71926	0.0245975	5.29682e-4	0.114841	0.006804
chr7	104161071	104161126	8968568	0	-	0.381818	(0.36,0.39]	chr7	686431	1	CDS	CDS:UTR3:EXON_MRNA	ORC5	ENSG00000164815.11	ENST00000297431.9:ENST00000422497.5:ENST00000477223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.63115	3.675205	4.71926	0.0245975	5.29682e-4	0.114841	0.006804
chr7	105247413	105247513	8972111	0	-	0.39	(0.36,0.39]	chr7	686727	405	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.63115	3.675205	4.71926	0.0245975	5.29682e-4	0.114841	0.006804
chr1	171579827	171579895	537501	0	+	0.485294	(0.455,0.49]	chr1	57712	1	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.88121	3.6748950000000002	4.46858	1.57495e-4	2.38087e-6	0.002844	8.3081e-5
chr13	39013186	39013285	13976230	0	-	0.444444	(0.42,0.455]	chr13	1096566	6	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.43733	3.6747300000000003	4.91213	0.0103896	1.75074e-4	0.0640167	0.00306313
chr13	99529530	99529594	13865307	0	+	0.28125	[0,0.29]	chr13	1087158	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	3.47088	3.674615	3.87835	0.0015572	1.0775e-4	0.0165415	0.00192514
chr3	195784050	195784150	4661107	0	-	0.57	(0.53,0.59]	chr3	385270	54	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.52495	3.6745099999999997	3.82407	0.0179666	5.15316e-5	0.0918323	0.00105223
chr1	21865284	21865365	891103	0	-	0.604938	(0.59,1]	chr1	92458	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	3.4902	3.6744700000000003	3.85874	0.00130379	1.44531e-5	0.0142445	3.72961e-4
chr2	206144017	206144074	3133168	0	-	0.491228	(0.49,0.53]	chr2	277000	1	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.78962	3.674455	4.55929	0.0129044	0.00116196	0.0725185	0.0130851
chr4	17623798	17623895	4734384	0	+	0.525773	(0.49,0.53]	chr4	392802	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.78962	3.674455	4.55929	0.0129044	0.00116196	0.0725185	0.0130851
chr5	144165552	144165604	6881814	0	-	0.5	(0.49,0.53]	chr5	527229	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5:ENST00000519064.5:ENST00000522203.5:ENST00000508754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.78962	3.674455	4.55929	0.0129044	0.00116196	0.0725185	0.0130851
chr17	1653541	1653612	16401296	0	-	0.478873	(0.455,0.49]	chr17	1334840	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000575116.1:ENST00000576585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.84079	3.67442	4.50805	0.00201021	0.00122223	0.0190112	0.0135383
chr1	44750502	44750564	173883	0	+	0.548387	(0.53,0.59]	chr1	22328	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.5766	3.67441	4.77222	8.34608e-4	6.67251e-4	0.00978328	0.00867533
chr20	57512671	57512752	18021696	0	-	0.518519	(0.49,0.53]	chr20	1527405	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	3.11892	3.6743900000000003	4.22986	0.00398244	1.25249e-5	0.0322851	3.30689e-4
chr1	154251040	154251132	479939	0	+	0.478261	(0.455,0.49]	chr1	49661	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	3.3841	3.67437	3.96464	1.17485e-4	6.27408e-5	0.00206023	0.00135074
chr17	49600277	49600377	16582088	0	-	0.5	(0.49,0.53]	chr17	1362439	15	UTR3	UTR3:EXON_MRNA	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000572686.1:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000503676.5:ENST00000577134.1:ENST00000507551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.92082	3.67436	4.4279	0.00827037	0.00196987	0.0534766	0.0193972
chr22	32401746	32401824	18476285	0	-	0.5	(0.49,0.53]	chr22	1577172	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RTCB	ENSG00000100220.12	ENST00000216038.6:ENST00000476619.5:ENST00000485373.5:ENST00000487704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	2.92082	3.67436	4.4279	0.00827037	0.00196987	0.0534766	0.0193972
chr6	20109673	20109749	7628535	0	-	0.5	(0.49,0.53]	chr6	581167	2	CDS	CDS:EXON_MRNA	MBOAT1	ENSG00000172197.11	ENST00000324607.8	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.18239	3.67398	5.16557	0.024394	6.36135e-5	0.111797	0.00136069
chr4	150852846	150852943	5731382	0	-	0.360825	(0.36,0.39]	chr4	452901	11	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	3.18642	3.673925	4.16143	0.00486719	0.00359152	0.0366328	0.0302391
chr5	11027199	11027253	5877018	0	+	0.388889	(0.36,0.39]	chr5	462151	1	EXON_SMALL	EXON_SMALL	RNU6-429P	ENSG00000207312.1	ENST00000384582.1	snRNA	snRNA	snRNA	snRNA	1	17	2	3.18642	3.673925	4.16143	0.00486719	0.00359152	0.0366328	0.0302391
chr2	200822178	200822277	2309389	0	+	0.393939	(0.39,0.42]	chr2	208970	1	UTR3	UTR3:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000409600.6:ENST00000409226.5:ENST00000452790.6:ENST00000359893.4	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.3298	3.6738549999999996	4.01791	0.00165391	4.78174e-5	0.0163614	0.00109049
chr22	37888464	37888558	18364793	0	+	0.404255	(0.39,0.42]	chr22	1562214	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1:ENST00000460638.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	12	142	2	2.81538	3.673785	4.53219	1.59392e-5	1.56484e-10	4.45148e-4	2.01085e-8
chr7	121085028	121085128	8494698	0	+	0.44	(0.42,0.455]	chr7	648338	80	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	170	2	3.24357	3.673545	4.10352	4.64819e-6	2.80383e-10	1.61169e-4	3.39891e-8
chr12	4324503	4324591	13177908	0	-	0.590909	(0.59,1]	chr12	1031102	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RP11-264F23.1	ENSG00000213970.4	ENST00000649073.1:ENST00000493323.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	71	2	3.11647	3.6733900000000004	4.23031	0.00535979	3.46639e-5	0.0406564	7.61275e-4
chr1	35470862	35470960	937332	0	-	0.459184	(0.455,0.49]	chr1	98627	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000485551.5:ENST00000440579.5:ENST00000431916.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	31	2	3.32637	3.673385	4.0204	0.00736097	1.64563e-4	0.0490627	0.00269001
chr2	69337976	69338055	2718445	0	-	0.455696	(0.455,0.49]	chr2	242023	2	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.32637	3.673385	4.0204	0.00736097	1.64563e-4	0.0490627	0.00269001
chr13	31151027	31151109	13951439	0	-	0.365854	(0.36,0.39]	chr13	1095033	2	CDS	CDS:UTR3:EXON_MRNA	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	3.02397	3.67317	4.32237	0.00674398	0.00273222	0.0461258	0.0237575
chr17	63590154	63590252	16317555	0	+	0.408163	(0.39,0.42]	chr17	1323671	11	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	3.66467	3.673105	3.68154	3.60066e-4	3.05414e-4	0.00544157	0.00442973
chr1	157125412	157125506	1318797	0	-	0.457447	(0.455,0.49]	chr1	134401	6	CDS	CDS:EXON_MRNA	ETV3	ENSG00000117036.12	ENST00000368192.9	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.83792	3.6729849999999997	4.50805	0.0110512	0.00122223	0.0665375	0.0135383
chr19	13147065	13147162	17472502	0	-	0.484536	(0.455,0.49]	chr19	1463504	13	INTRON	INTRON	STX10	ENSG00000104915.15	ENST00000587230.6:ENST00000343587.9:ENST00000591843.1:ENST00000589083.5:ENST00000242770.9:ENST00000587318.5:ENST00000593126.5:ENST00000440593.3:ENST00000588848.5:ENST00000591197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.83792	3.6729849999999997	4.50805	0.0110512	0.00122223	0.0665375	0.0135383
chr5	151489727	151489825	6298592	0	+	0.479592	(0.455,0.49]	chr5	491790	16	UTR3	UTR3:EXON_MRNA	SLC36A1	ENSG00000123643.13	ENST00000243389.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.83792	3.6729849999999997	4.50805	0.0110512	0.00122223	0.0665375	0.0135383
chrX	101412950	101413046	18786568	0	+	0.46875	(0.455,0.49]	chrX	1601436	10	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.83792	3.6729849999999997	4.50805	0.0110512	0.00122223	0.0665375	0.0135383
chr3	49368427	49368504	4174163	0	-	0.493506	(0.49,0.53]	chr3	350916	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.78658	3.672935	4.55929	0.00116196	1.13193e-4	0.0130851	0.0020093
chr8	140527048	140527147	10132113	0	-	0.515152	(0.49,0.53]	chr8	760954	70	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.60116	3.67277	4.74438	0.0056515	5.91752e-4	0.0422191	0.00743488
chr17	42842669	42842768	16230338	0	+	0.434343	(0.42,0.455]	chr17	1313600	12	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.31161	3.67272	4.03383	0.00186138	4.24324e-5	0.018635	8.98949e-4
chr11	64193217	64193287	11979193	0	+	0.528571	(0.49,0.53]	chr11	918683	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000543847.1:ENST00000540736.1:ENST00000540501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	1.81659	3.6724799999999997	5.52837	0.0376859	7.50805e-6	0.147713	2.3779e-4
chr12	119681324	119681424	13114525	0	+	0.52	(0.49,0.53]	chr12	1023559	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	38	2	3.33324	3.672475	4.01171	0.00162947	4.88513e-5	0.0169972	0.00100497
chrX	66258909	66258979	18718228	0	+	0.528571	(0.49,0.53]	chrX	1597058	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.33324	3.672475	4.01171	0.00162947	4.88513e-5	0.0169972	0.00100497
chr16	24066116	24066216	15597725	0	+	0.34	(0.33,0.36]	chr16	1236830	302	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498739.1:ENST00000647422.1:ENST00000486868.1:ENST00000482000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.97606	3.67242	4.36878	0.00871774	0.0021194	0.0558165	0.0198008
chr19	14406481	14406557	17242505	0	+	0.657895	(0.59,1]	chr19	1421853	3	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.5215	3.6723749999999997	4.82325	0.032241	0.002381	0.135671	0.0216895
chr1	225985201	225985301	1531417	0	-	0.35	(0.33,0.36]	chr1	153219	26	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.00573	3.672345	4.33896	0.00630535	0.00182033	0.044701	0.0183913
chr5	127552509	127552608	6205034	0	+	0.292929	(0.29,0.33]	chr5	483456	7	UTR3	UTR3:EXON_MRNA:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	3.46188	3.6719749999999998	3.88207	1.56259e-4	7.85509e-7	0.00282486	3.25904e-5
chr6	33304299	33304381	7669251	0	-	0.658537	(0.59,1]	chr6	587572	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	141	2	3.32343	3.67192	4.02041	5.92654e-5	6.56476e-6	0.00118941	2.13052e-4
chr17	75318468	75318566	16683186	0	-	0.540816	(0.53,0.59]	chr17	1373169	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	3.52495	3.671875	3.8188	1.54941e-4	5.15316e-5	0.0028049	0.00105223
chr11	308352	308413	11756390	0	+	0.557377	(0.53,0.59]	chr11	897724	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IFITM2:RP11-326C3.17	ENSG00000185201.17:ENSG00000288681.1	ENST00000681810.1:ENST00000681914.1:ENST00000680081.1:ENST00000679962.1:ENST00000681900.1:ENST00000681276.1:ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000680619.1:ENST00000602569.2:ENST00000527146.1:ENST00000399815.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	117	2	3.13338	3.671845	4.21031	2.9794e-5	3.71502e-8	7.38217e-4	2.39443e-6
chr21	33903934	33904021	18224259	0	-	0.413793	(0.39,0.42]	chr21	1546642	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	119	2	3.56099	3.671575	3.78216	1.10025e-6	5.1712e-8	4.77781e-5	3.18247e-6
chr10	70419913	70420006	11100428	0	+	0.505376	(0.49,0.53]	chr10	844343	1	CDS	CDS:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.51981	3.671555	3.8233	6.88328e-4	1.44192e-4	0.00876781	0.00242438
chr1	45693375	45693461	175253	0	+	0.476744	(0.455,0.49]	chr1	22794	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	3.0141	3.671465	4.32883	9.3076e-4	6.31002e-6	0.0111917	1.88287e-4
chr3	31615104	31615203	3392274	0	+	0.40404	(0.39,0.42]	chr3	295038	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	2.48357	3.6714599999999997	4.85935	0.00171404	1.16841e-9	0.017714	1.20318e-7
chr12	115991206	115991300	13555274	0	-	0.478723	(0.455,0.49]	chr12	1067064	3	CDS	CDS:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000648916.1:ENST00000549786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	51	2	2.01498	3.671285	5.32759	0.00237108	1.92345e-5	0.0216648	5.18397e-4
chr1	25420686	25420786	904385	0	-	0.55	(0.53,0.59]	chr1	94065	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1:ENST00000495048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.7898	3.67127	4.55274	0.0128364	0.00167999	0.0719798	0.0164993
chr1	37708321	37708366	142743	0	+	0.533333	(0.53,0.59]	chr1	17844	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.7898	3.67127	4.55274	0.0128364	0.00167999	0.0719798	0.0164993
chr3	49015006	49015097	3459296	0	+	0.56044	(0.53,0.59]	chr3	301943	3	CDS	CDS:UTR3:EXON_MRNA	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.7898	3.67127	4.55274	0.0128364	0.00167999	0.0719798	0.0164993
chr6	2948472	2948548	7570804	0	-	0.565789	(0.53,0.59]	chr6	577709	2	CDS	CDS:UTR3:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.7898	3.67127	4.55274	0.0128364	0.00167999	0.0719798	0.0164993
chrX	37694372	37694460	18656471	0	+	0.579545	(0.53,0.59]	chrX	1591359	2	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.7898	3.67127	4.55274	0.0128364	0.00167999	0.0719798	0.0164993
chr1	32222362	32222441	127467	0	+	0.582278	(0.53,0.59]	chr1	15779	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	3.47419	3.6711400000000003	3.86809	8.75273e-4	1.18973e-4	0.0106963	0.00207755
chr20	31527483	31527582	17748376	0	+	0.545455	(0.53,0.59]	chr20	1497833	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000498035.5:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	3.47419	3.6711400000000003	3.86809	8.75273e-4	1.18973e-4	0.0106963	0.00207755
chr1	151557445	151557544	472084	0	+	0.484848	(0.455,0.49]	chr1	48323	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	TUFT1:RP11-74C1.4:RP11-74C1.2	ENSG00000143367.16:ENSG00000232536.1:ENSG00000223861.1	ENST00000392712.7:ENST00000368848.6:ENST00000368849.8:ENST00000353024.4:ENST00000498606.5:ENST00000434112.1:ENST00000452587.1	protein_coding	protein_coding	protein_coding:lncRNA:processed_pseudogene	protein_coding:retained_intron:lncRNA:processed_pseudogene	5	60	2	3.11472	3.67112	4.22752	3.40155e-5	1.24055e-5	8.31666e-4	3.28918e-4
chr10	87945936	87946024	11176458	0	+	0.511364	(0.49,0.53]	chr10	849300	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	PTEN:RPL11P3	ENSG00000171862.11:ENSG00000213613.2	ENST00000371953.8:ENST00000395256.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	4	62	2	2.46958	3.671105	4.87263	0.00344146	1.15551e-7	0.0292838	6.3314e-6
chr10	17235230	17235293	10938834	0	+	0.492063	(0.49,0.53]	chr10	833003	2	CDS	CDS:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	124	2	3.04894	3.6710949999999998	4.29325	5.10967e-5	1.96716e-9	0.00114668	1.91065e-7
chr12	54240855	54240955	13342935	0	-	0.31	(0.29,0.33]	chr12	1049602	95	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	2.7933	3.6710199999999995	4.54874	3.06651e-5	2.87944e-8	6.87388e-4	2.10587e-6
chr11	869857	869956	12228306	0	-	0.666667	(0.59,1]	chr11	943924	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000529539.5:ENST00000532909.5:ENST00000534207.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000524538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.11642	3.670955	5.22549	0.0144884	5.13843e-4	0.0790431	0.00665221
chr4	173099106	173099206	5797271	0	-	0.54	(0.53,0.59]	chr4	456382	32	INTRON	INTRON	RP11-10K16.1	ENSG00000245213.7	ENST00000656803.1:ENST00000663396.1	lncRNA	lncRNA	lncRNA	lncRNA	7	130	2	2.72408	3.67094	4.6178	3.72688e-4	9.61601e-10	0.00559101	1.01386e-7
chr5	179705781	179705858	6414206	0	+	0.454545	(0.42,0.455]	chr5	499136	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	114	2	3.52348	3.670795	3.81811	7.6394e-7	1.79784e-7	3.52166e-5	9.28825e-6
chr19	51239517	51239588	17379015	0	+	0.521127	(0.49,0.53]	chr19	1445236	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD33	ENSG00000105383.15	ENST00000421133.6:ENST00000262262.5:ENST00000601785.5:ENST00000598473.1:ENST00000600557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	3.60653	3.6707349999999996	3.73494	0.0189345	4.50981e-4	0.0934721	0.00605268
chr2	27393172	27393269	2570550	0	-	0.43299	(0.42,0.455]	chr2	231573	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	PPM1G:FTH1P3	ENSG00000115241.11:ENSG00000213453.3	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1:ENST00000394290.3	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	3	58	2	3.05889	3.670655	4.28242	0.00524205	2.10422e-7	0.0399155	1.06041e-5
chrX	48793171	48793234	18693016	0	+	0.555556	(0.53,0.59]	chrX	1594409	1	CDS	CDS:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.14205	3.67044	5.19883	0.0123179	8.7034e-5	0.070688	0.00177086
chr11	126263230	126263328	12645136	0	-	0.510204	(0.49,0.53]	chr11	981826	4	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	3.14314	3.6703799999999998	4.19762	9.45216e-5	4.23721e-7	0.00188394	1.92035e-5
chr11	118409098	118409191	12157965	0	+	0.290323	(0.29,0.33]	chr11	936964	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000527186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	3.39258	3.67037	3.94816	3.75753e-5	2.57518e-7	9.03577e-4	1.25763e-5
chr4	70958873	70958956	4878678	0	+	0.409639	(0.39,0.42]	chr4	401882	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	3.19588	3.670325	4.14477	0.00321212	2.09513e-5	0.0280721	5.04211e-4
chr17	63593984	63594082	16317594	0	+	0.295918	(0.29,0.33]	chr17	1323671	50	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	2.70085	3.670295	4.63974	4.87372e-4	4.81181e-4	0.00677016	0.00638318
chr7	73693623	73693669	8332376	0	+	0.456522	(0.455,0.49]	chr7	634581	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000430446.2:ENST00000442099.1:ENST00000453316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	69	2	2.04847	3.67015	5.29183	0.0192065	2.89856e-9	0.0943643	2.64796e-7
chr5	176388750	176388819	6401932	0	+	0.623188	(0.59,1]	chr5	497297	1	UTR5	UTR5:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	5	154	2	3.25434	3.669935	4.08553	4.06738e-4	5.09197e-7	0.00598202	2.24845e-5
chr1	93346645	93346745	355962	0	+	0.48	(0.455,0.49]	chr1	35125	1	CDS_START	CDS_START:CDS:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.13787	3.66988	4.20189	0.00397662	4.66183e-4	0.0322851	0.00616585
chr4	80008520	80008616	5484545	0	-	0.489583	(0.455,0.49]	chr4	439570	1	CDS	CDS:UTR3:EXON_MRNA	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	3.0141	3.669845	4.32559	9.3076e-4	9.90251e-9	0.0111917	7.695e-7
chr12	53467220	53467293	12886609	0	+	0.506849	(0.49,0.53]	chr12	1002456	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	36	475	2	3.6032	3.6698399999999998	3.73648	1.81957e-9	2.45177e-11	1.92435e-7	3.87751e-9
chr17	49409330	49409401	16581195	0	-	0.549296	(0.53,0.59]	chr17	1362372	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	3.17542	3.669625	4.16383	0.00659193	3.78824e-4	0.0454205	0.00525548
chr15	69448249	69448338	15002357	0	+	0.303371	(0.29,0.33]	chr15	1179279	6	UTR3	UTR3:EXON_MRNA	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000352331.8:ENST00000647715.1:ENST00000679126.1:ENST00000559279.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.92065	3.669385	4.41812	0.0117842	0.00162106	0.0686664	0.0161179
chr20	56404312	56404410	17834520	0	+	0.295918	(0.29,0.33]	chr20	1507915	7	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9:ENST00000493039.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.92065	3.669385	4.41812	0.0117842	0.00162106	0.0686664	0.0161179
chr3	100384478	100384533	4325709	0	-	0.327273	(0.29,0.33]	chr3	360603	1	CDS	CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.92065	3.669385	4.41812	0.0117842	0.00162106	0.0686664	0.0161179
chr6	57054268	57054367	7190738	0	+	0.292929	(0.29,0.33]	chr6	555988	17	CDS	CDS:EXON_MRNA	KIAA1586	ENSG00000168116.14	ENST00000545356.5:ENST00000370733.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.92065	3.669385	4.41812	0.0117842	0.00162106	0.0686664	0.0161179
chr9	120857544	120857643	10834150	0	-	0.59596	(0.59,1]	chr9	820523	20	UTR3	UTR3:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.39747	3.669385	4.9413	0.0430221	0.00191468	0.161091	0.0190905
chr12	54231476	54231575	13342841	0	-	0.474747	(0.455,0.49]	chr12	1049602	1	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	6	66	2	2.87003	3.669305	4.46858	6.89102e-5	2.38087e-6	0.00146082	8.3081e-5
chr9	128185622	128185699	10863912	0	-	0.584416	(0.53,0.59]	chr9	823442	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	279	2	2.61431	3.6690199999999997	4.72373	6.68351e-6	8.32812e-12	2.16804e-4	1.47872e-9
chr2	27435581	27435651	1692528	0	+	0.442857	(0.42,0.455]	chr2	166032	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NRBP1	ENSG00000115216.14	ENST00000233557.7:ENST00000379852.8:ENST00000379863.7:ENST00000493746.1:ENST00000460499.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.19078	3.668915	4.14705	0.00310864	2.1071e-5	0.0274272	5.06044e-4
chr17	44862809	44862906	16560037	0	-	0.556701	(0.53,0.59]	chr17	1359737	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000585616.5:ENST00000587914.1:ENST00000585794.5:ENST00000586654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.77921	3.668905	4.5586	0.0132865	0.00161229	0.0740932	0.0169168
chr5	137753607	137753696	6858096	0	-	0.539326	(0.53,0.59]	chr5	524501	5	CDS	CDS:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.77921	3.668905	4.5586	0.0132865	0.00161229	0.0740932	0.0169168
chr11	34100153	34100251	11905496	0	+	0.357143	(0.33,0.36]	chr11	909587	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	116	2	3.45538	3.6689049999999996	3.88243	1.20667e-6	5.29543e-9	5.16369e-5	4.47332e-7
chr1	16395915	16396012	72955	0	+	0.587629	(0.53,0.59]	chr1	8467	9	UTR3	UTR3:EXON_MRNA	SZRD1	ENSG00000055070.17	ENST00000401089.3:ENST00000401088.9:ENST00000492354.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr1	76700256	76700350	307201	0	+	0.574468	(0.53,0.59]	chr1	31551	6	EXON_PSEUDO	EXON_PSEUDO	TPI1P1	ENSG00000226415.1	ENST00000420977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr12	6870759	6870853	12714958	0	+	0.542553	(0.53,0.59]	chr12	987157	5	UTR3	UTR3:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000535434.5	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr16	67948060	67948159	15991170	0	-	0.575758	(0.53,0.59]	chr16	1283577	1	CDS	CDS:EXON_MRNA	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000576616.5:ENST00000570802.5:ENST00000537830.6:ENST00000573023.6:ENST00000576513.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr19	14390923	14391014	17242329	0	+	0.538462	(0.53,0.59]	chr19	1421795	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADGRE5	ENSG00000123146.20	ENST00000587728.5:ENST00000358600.7:ENST00000587535.3:ENST00000586517.5:ENST00000587606.5:ENST00000591080.4:ENST00000357355.7:ENST00000242786.6:ENST00000592261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr22	41178558	41178657	18378979	0	+	0.555556	(0.53,0.59]	chr22	1564239	19	CDS	CDS:EXON_MRNA	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr8	41654858	41654954	9806269	0	-	0.552083	(0.53,0.59]	chr8	741510	18	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.89916	3.668895	4.43863	0.00890406	0.00254763	0.0565003	0.0233955
chr10	63213965	63214064	11531881	0	-	0.353535	(0.33,0.36]	chr10	878549	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JMJD1C	ENSG00000171988.19	ENST00000639129.1:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.57153	3.66889	4.76625	0.00330025	3.84608e-4	0.028478	0.00531017
chr16	68191591	68191683	15714921	0	+	0.48913	(0.455,0.49]	chr16	1251034	10	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.27492	3.66887	5.06282	0.0193827	1.16789e-4	0.0943643	0.0020505
chr2	128170287	128170338	2060294	0	+	0.490196	(0.49,0.53]	chr2	193312	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	1.99044	3.6686699999999997	5.3469	0.0435903	2.75121e-5	0.170594	6.30607e-4
chr6	27020371	27020465	7103718	0	+	0.478723	(0.455,0.49]	chr6	543268	6	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00240	ENSG00000224843.8	ENST00000669756.1:ENST00000606878.2:ENST00000420081.2:ENST00000664178.1:ENST00000668297.1:ENST00000666341.1:ENST00000664092.1:ENST00000662403.1:ENST00000424968.6:ENST00000652085.1:ENST00000661007.1:ENST00000654448.1	lncRNA	lncRNA	lncRNA	lncRNA	56	606	2	2.6948	3.66863	4.64246	2.25463e-7	1e-12	1.12243e-5	2.46312e-10
chr16	18509216	18509267	15876361	0	-	0.431373	(0.42,0.455]	chr16	1269092	2	CDS	CDS:EXON_MRNA:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.27707	3.668305	4.05954	0.00617886	0.00207325	0.0439741	0.0194849
chr9	99218657	99218746	10766956	0	-	0.438202	(0.42,0.455]	chr9	815241	8	CDS	CDS:UTR3:EXON_MRNA	ALG2	ENSG00000119523.10	ENST00000476832.2:ENST00000238477.5:ENST00000319033.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.27707	3.668305	4.05954	0.00617886	0.00207325	0.0439741	0.0194849
chrY	5338307	5338400	19342305	0	-	0.451613	(0.42,0.455]	chrY	1645390	7	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P2	ENSG00000235001.3	ENST00000422633.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	3.27707	3.668305	4.05954	0.00617886	0.00207325	0.0439741	0.0194849
chr11	46751439	46751534	12383558	0	-	0.4	(0.39,0.42]	chr11	956005	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	2.59477	3.66824	4.74171	1.97342e-4	2.6028e-7	0.00313008	1.4243e-5
chr9	133154084	133154174	10879525	0	-	0.688889	(0.59,1]	chr9	825595	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.36593	3.6680400000000004	4.97015	0.0141097	0.00140057	0.077233	0.0144327
chr5	179729543	179729643	6414469	0	+	0.43	(0.42,0.455]	chr5	499211	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	476	2	2.81553	3.667925	4.52032	3.24347e-7	1e-12	1.71469e-5	2.25522e-10
chr14	30921005	30921105	14567261	0	-	0.4	(0.39,0.42]	chr14	1141222	15	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.13132	3.667835	5.20435	0.02908	2.91423e-5	0.127648	7.26551e-4
chr2	26239101	26239143	2566142	0	-	0.404762	(0.39,0.42]	chr2	230640	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	3.32811	3.667555	4.007	0.00182819	1.77795e-6	0.0183913	6.48503e-5
chr11	119093945	119094037	12626588	0	-	0.521739	(0.49,0.53]	chr11	979845	2	UTR3	UTR3:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	99	2	3.34224	3.667405	3.99257	6.47355e-6	1.93793e-7	2.10845e-4	9.9078e-6
chr19	34469704	34469801	17301284	0	+	0.298969	(0.29,0.33]	chr19	1430051	6	UTR3	UTR3:EXON_MRNA	UBA2	ENSG00000126261.13	ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding	19	174	2	3.48449	3.667365	3.85024	3.5394e-8	2.55716e-10	2.54224e-6	3.11831e-8
chr20	36047286	36047384	17956014	0	-	0.357143	(0.33,0.36]	chr20	1521358	18	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	13	97	2	2.45571	3.66724	4.87877	6.40535e-5	8.09451e-10	0.00125657	9.51449e-8
chr17	38113700	38113796	16215329	0	+	0.447917	(0.42,0.455]	chr17	1310247	19	INTRON	INTRON	CH17-258A22.4	ENSG00000274615.1	ENST00000611212.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	25	2	2.47379	3.667085	4.86038	0.00996858	3.34791e-4	0.0621728	0.00472923
chr12	67314017	67314116	12934155	0	+	0.333333	(0.33,0.36]	chr12	1008121	13	UTR3	UTR3:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.64851	3.667055	4.6856	0.00492353	3.92435e-4	0.0366648	0.00583618
chr7	103366075	103366163	8441694	0	+	0.420455	(0.42,0.455]	chr7	645112	1	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.4231	3.667035	3.91097	0.00112541	8.75299e-5	0.0128481	0.0016272
chr8	47969797	47969883	9316214	0	+	0.418605	(0.39,0.42]	chr8	713558	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000518680.1:ENST00000517709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	61	2	3.05461	3.6670299999999996	4.27945	8.55091e-4	2.07257e-7	0.0105173	1.04734e-5
chr20	35654431	35654530	17955003	0	-	0.414141	(0.39,0.42]	chr20	1521109	10	CDS	CDS:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.63229	3.666835	4.70138	7.8066e-4	4.11166e-7	0.00973486	1.87588e-5
chr5	32585556	32585639	5925066	0	+	0.614458	(0.59,1]	chr5	464163	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.25872	3.666625	5.07453	0.0193473	0.00117617	0.0969537	0.0132131
chr1	67207665	67207698	263605	0	+	0.484848	(0.455,0.49]	chr1	29472	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.69344	3.66661	4.63978	0.0176068	6.94032e-4	0.0925619	0.00876781
chr12	93491745	93491845	13019486	0	+	0.48	(0.455,0.49]	chr12	1013488	34	INTRON	INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000551396.5:ENST00000549561.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.69344	3.66661	4.63978	0.0176068	6.94032e-4	0.0925619	0.00876781
chr19	12723248	12723339	17470507	0	-	0.472527	(0.455,0.49]	chr19	1463044	1	UTR5	UTR5:EXON_MRNA	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000588216.5:ENST00000589337.5:ENST00000590781.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.69344	3.66661	4.63978	0.0176068	6.94032e-4	0.0925619	0.00876781
chr19	38838893	38838954	17561092	0	-	0.491803	(0.49,0.53]	chr19	1475074	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5:ENST00000601664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	71	2	2.74861	3.6665650000000003	4.58452	1.43966e-4	9.98532e-7	0.00242438	4.42534e-5
chr1	151052737	151052835	1291632	0	-	0.428571	(0.42,0.455]	chr1	128778	19	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	68	2	3.31035	3.6663550000000003	4.02236	3.43313e-5	1.61783e-6	8.37726e-4	5.98677e-5
chr1	32810678	32810766	923840	0	-	0.465909	(0.455,0.49]	chr1	97374	2	CDS	CDS:EXON_MRNA:INTRON	YARS1	ENSG00000134684.12	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000481895.6:ENST00000616261.2:ENST00000472692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	2.35716	3.6662049999999997	4.97525	0.00260884	1.38474e-4	0.0230635	0.00254294
chr12	45850428	45850527	12851681	0	+	0.474747	(0.455,0.49]	chr12	998018	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.96925	3.6661599999999996	4.36307	0.00698725	0.00218641	0.0473262	0.0208941
chr12	50099094	50099189	12870518	0	+	0.484211	(0.455,0.49]	chr12	999966	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9:ENST00000548573.5:ENST00000549274.1:ENST00000550280.1:ENST00000551352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.96925	3.6661599999999996	4.36307	0.00698725	0.00218641	0.0473262	0.0208941
chr12	93411140	93411219	13472827	0	-	0.481013	(0.455,0.49]	chr12	1059392	1	CDS	CDS:UTR5:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.96925	3.6661599999999996	4.36307	0.00698725	0.00218641	0.0473262	0.0208941
chr13	114324331	114324428	13913389	0	+	0.484536	(0.455,0.49]	chr13	1091008	5	CDS	CDS:EXON_MRNA:INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000361283.4:ENST00000646155.1:ENST00000644294.1:ENST00000643483.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.96925	3.6661599999999996	4.36307	0.00698725	0.00218641	0.0473262	0.0208941
chr21	33586060	33586120	18221039	0	-	0.483333	(0.455,0.49]	chr21	1546509	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DONSON:AP000304.12	ENSG00000159147.18:ENSG00000249209.2	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000444517.5:ENST00000442660.5:ENST00000437395.5:ENST00000432378.5:ENST00000440810.1:ENST00000429238.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.96925	3.6661599999999996	4.36307	0.00698725	0.00218641	0.0473262	0.0208941
chr7	135617601	135617682	8553017	0	+	0.469136	(0.455,0.49]	chr7	652826	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.96925	3.6661599999999996	4.36307	0.00698725	0.00218641	0.0473262	0.0208941
chr12	113390369	113390466	13101758	0	+	0.453608	(0.42,0.455]	chr12	1022448	19	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	3.46379	3.665975	3.86816	7.67421e-7	9.42535e-8	3.53615e-5	5.30719e-6
chr12	129113140	129113217	13153768	0	+	0.454545	(0.42,0.455]	chr12	1027745	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5:ENST00000508925.6:ENST00000540739.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	10	136	2	3.20918	3.66595	4.12272	6.08017e-6	2.14067e-9	1.99809e-4	2.04726e-7
chr3	185630136	185630234	3956293	0	+	0.397959	(0.39,0.42]	chr3	333423	4	UTR3	UTR3:EXON_MRNA	SENP2	ENSG00000163904.13	ENST00000296257.10:ENST00000413407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.0503	3.66579	4.28128	0.00570576	0.00342611	0.0424438	0.0283456
chr9	88016299	88016397	10348013	0	+	0.469388	(0.455,0.49]	chr9	778851	1	EXON_PSEUDO	EXON_PSEUDO	RPS10P3	ENSG00000217716.3	ENST00000439253.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	150	2	3.64862	3.665735	3.68285	5.73889e-8	3.69698e-8	3.46041e-6	2.62029e-6
chr5	139626055	139626155	6250560	0	+	0.44	(0.42,0.455]	chr5	487108	22	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	83	2	3.62635	3.665725	3.7051	2.72662e-5	3.77638e-7	6.94447e-4	1.73699e-5
chr1	26318017	26318071	108924	0	+	0.518519	(0.49,0.53]	chr1	12978	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CD52	ENSG00000169442.9	ENST00000374213.3:ENST00000470468.1:ENST00000492808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	3.1011	3.6654800000000005	4.22986	5.69237e-4	1.25249e-5	0.00778538	3.30689e-4
chrX	52515427	52515527	19073875	0	-	0.53	(0.49,0.53]	chrX	1621967	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XAGE1B	ENSG00000204382.11	ENST00000375616.5:ENST00000375613.7:ENST00000375612.8:ENST00000518075.1:ENST00000519579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.69746	3.66542	4.63338	0.00380414	9.56909e-4	0.0317723	0.010724
chr12	56511757	56511852	12899192	0	+	0.473684	(0.455,0.49]	chr12	1004551	9	EXON_PSEUDO	EXON_PSEUDO	HSPD1P4	ENSG00000257576.1	ENST00000547203.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	42	2	2.45892	3.66539	4.87186	8.02402e-4	2.33781e-4	0.00943079	0.00385436
chr3	10125625	10125708	3302341	0	+	0.421687	(0.42,0.455]	chr3	290643	1	CDS	CDS:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.76161	3.665245	4.56888	9.19052e-4	1.1745e-6	0.0111046	4.57782e-5
chr1	42176637	42176736	964174	0	-	0.343434	(0.33,0.36]	chr1	101503	2	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.07736	3.6652199999999997	5.25308	0.0442037	2.94355e-5	0.172163	6.67979e-4
chr13	46787020	46787090	14012377	0	-	0.457143	(0.455,0.49]	chr13	1098882	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ESD	ENSG00000139684.15	ENST00000378720.8:ENST00000378697.5:ENST00000471867.3:ENST00000495654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.50904	3.6651800000000003	4.82132	0.0310515	1.63946e-7	0.131262	8.57024e-6
chr7	105106604	105106688	8449810	0	+	0.464286	(0.455,0.49]	chr7	645326	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	3.59437	3.66513	3.73589	2.30579e-4	3.2026e-5	0.00382267	7.10499e-4
chr2	231255985	231256084	2424824	0	+	0.535354	(0.53,0.59]	chr2	218484	150	INTRON	INTRON	ARMC9	ENSG00000135931.19	ENST00000349938.8:ENST00000683165.1:ENST00000611582.5:ENST00000683275.1:ENST00000682002.1:ENST00000682334.1:ENST00000682027.1:ENST00000683271.1:ENST00000436339.6:ENST00000683702.1:ENST00000684011.1:ENST00000683107.1:ENST00000684432.1:ENST00000684565.1:ENST00000684051.1:ENST00000682100.1:ENST00000682367.1:ENST00000683063.1:ENST00000683112.1:ENST00000683814.1:ENST00000682233.1:ENST00000682030.1:ENST00000684718.1:ENST00000683321.1:ENST00000683040.1:ENST00000683966.1:ENST00000683553.1:ENST00000684368.1:ENST00000682264.1:ENST00000683575.1:ENST00000683629.1:ENST00000469789.2:ENST00000683520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	40	608	2	3.05505	3.6649900000000004	4.27493	4.85347e-8	1e-12	3.31945e-6	2.25522e-10
chr16	14435883	14435976	15861057	0	-	0.526882	(0.49,0.53]	chr16	1267182	3	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	118	2	2.5375	3.6649000000000003	4.7923	0.00104367	9.93102e-11	0.0115928	1.4926e-8
chr8	116854244	116854318	10035239	0	-	0.418919	(0.39,0.42]	chr8	755441	1	CDS	CDS:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.55844	3.66475	4.77106	0.0263695	3.03764e-4	0.117164	0.00472028
chr15	58597157	58597257	15310673	0	-	0.33	(0.29,0.33]	chr15	1208273	85	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	87	2	2.97803	3.664605	4.35118	1.42495e-5	6.43598e-9	4.03079e-4	5.2746e-7
chr19	48919029	48919122	17367812	0	+	0.548387	(0.53,0.59]	chr19	1442142	1	CDS	CDS:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5:ENST00000460125.1:ENST00000469291.1:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	155	2	3.28346	3.6645849999999998	4.04571	1.54606e-6	2.53005e-8	6.35187e-5	1.72434e-6
chr17	76564960	76565057	16359199	0	+	0.412371	(0.39,0.42]	chr17	1328581	20	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000667091.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	5	58	2	3.16208	3.6643549999999996	4.16663	2.3671e-5	1.84729e-5	5.5951e-4	5.02409e-4
chr2	144398908	144399004	2929341	0	-	0.458333	(0.455,0.49]	chr2	259644	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.61558	3.664315	4.71305	0.00184897	3.85068e-7	0.0185736	1.76303e-5
chr1	54225931	54226031	1028114	0	-	0.45	(0.42,0.455]	chr1	106759	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.19674	3.664215	5.13169	0.0254904	8.60227e-5	0.117089	0.00160731
chr4	25747630	25747729	5361845	0	-	0.434343	(0.42,0.455]	chr4	430113	3	UTR3	UTR3:EXON_MRNA	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000513416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.19674	3.664215	5.13169	0.0254904	8.60227e-5	0.117089	0.00160731
chr20	49952338	49952435	17814640	0	+	0.505155	(0.49,0.53]	chr20	1506968	2	UTR3	UTR3:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000622999.3:ENST00000244061.6:ENST00000622920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	2.78173	3.664205	4.54668	2.73481e-4	1.40979e-6	0.0044066	5.33111e-5
chr1	186320364	186320418	1411783	0	-	0.555556	(0.53,0.59]	chr1	142790	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000467810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.36991	3.66408	4.95825	0.00501452	2.87508e-4	0.0370872	0.00457439
chr20	49089321	49089397	17811795	0	+	0.368421	(0.36,0.39]	chr20	1506564	2	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	3.42891	3.6640449999999998	3.89918	1.0624e-4	9.14064e-5	0.00205241	0.0016849
chr18	31547038	31547136	16809170	0	+	0.44898	(0.42,0.455]	chr18	1386482	4	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	9	117	2	3.56359	3.664025	3.76446	1.17026e-6	6.08943e-8	5.01919e-5	3.6541e-6
chr9	73169031	73169092	10304782	0	+	0.442623	(0.42,0.455]	chr9	776063	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000491192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	3.62315	3.66401	3.70487	4.234e-4	1.55091e-5	0.00613535	3.95473e-4
chr1	237944895	237944990	1568970	0	-	0.421053	(0.42,0.455]	chr1	157250	7	UTR5	UTR5:EXON_MRNA	MTRNR2L11	ENSG00000270188.1	ENST00000604646.1	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.60504	3.66398	4.72292	0.00201537	3.66958e-7	0.0197874	1.6957e-5
chr2	43982335	43982434	2623929	0	-	0.434343	(0.42,0.455]	chr2	236285	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1:ENST00000682496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.57051	3.663895	4.75728	0.0265466	5.3817e-4	0.120071	0.00686676
chr22	30975660	30975758	18344843	0	+	0.44898	(0.42,0.455]	chr22	1559168	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.57051	3.663895	4.75728	0.0265466	5.3817e-4	0.120071	0.00686676
chr7	6149762	6149852	8113640	0	+	0.444444	(0.42,0.455]	chr7	620353	3	CDS	CDS:UTR3:EXON_MRNA	USP42	ENSG00000106346.11	ENST00000306177.9:ENST00000479544.6:ENST00000465073.6:ENST00000521713.1:ENST00000426246.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.57051	3.663895	4.75728	0.0265466	5.3817e-4	0.120071	0.00686676
chrX	120456709	120456769	19196337	0	-	0.433333	(0.42,0.455]	chrX	1632015	2	CDS	CDS:EXON_MRNA	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.57051	3.663895	4.75728	0.0265466	5.3817e-4	0.120071	0.00686676
chr17	59694628	59694725	16295604	0	+	0.319588	(0.29,0.33]	chr17	1321774	9	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	111	2	3.0813	3.66385	4.2464	1.31962e-5	4.23053e-10	3.79554e-4	4.89538e-8
chr2	85327292	85327390	2770186	0	-	0.591837	(0.59,1]	chr2	245656	9	CDS	CDS:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.38614	3.66372	4.9413	0.0128707	0.00191468	0.0725185	0.0190905
chr15	64381325	64381371	15341552	0	-	0.478261	(0.455,0.49]	chr15	1211069	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.35214	3.6636949999999997	4.97525	0.0455621	1.38474e-4	0.168044	0.00254294
chr1	77717956	77718047	1112069	0	-	0.384615	(0.36,0.39]	chr1	111734	2	CDS	CDS:EXON_MRNA	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000370792.7:ENST00000527390.1:ENST00000498328.1:ENST00000461986.5:ENST00000531637.5:ENST00000462192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.29474	3.66347	4.0322	0.00588589	0.00194306	0.0427941	0.0185233
chr5	140117542	140117642	6252269	0	+	0.39	(0.36,0.39]	chr5	487304	25	UTR3	UTR3:EXON_MRNA	PURA	ENSG00000185129.8	ENST00000331327.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.29474	3.66347	4.0322	0.00588589	0.00194306	0.0427941	0.0185233
chrX	110177098	110177196	18820977	0	+	0.367347	(0.36,0.39]	chrX	1603939	38	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.29474	3.66347	4.0322	0.00588589	0.00194306	0.0427941	0.0185233
chrX	138632151	138632251	19251285	0	-	0.33	(0.29,0.33]	chrX	1635533	176	UTR3	UTR3:EXON_MRNA	FGF13	ENSG00000129682.16	ENST00000315930.11:ENST00000305414.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.08261	3.66324	4.24387	0.0048227	0.00263476	0.0365653	0.0239118
chr11	74254603	74254703	12016989	0	+	0.41	(0.39,0.42]	chr11	926524	12	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.99507	3.663185	4.3313	0.00637824	0.00209984	0.0449937	0.0204266
chr14	23098081	23098179	14175750	0	+	0.418367	(0.39,0.42]	chr14	1110555	1	UTR3	UTR3:EXON_MRNA	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.99507	3.663185	4.3313	0.00637824	0.00209984	0.0449937	0.0204266
chr17	76733586	76733686	16359319	0	+	0.41	(0.39,0.42]	chr17	1328610	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	METTL23:RP11-318A15.7	ENSG00000181038.14:ENSG00000267168.1	ENST00000615984.4:ENST00000341249.11:ENST00000591571.5:ENST00000588783.5:ENST00000586738.5:ENST00000588563.5:ENST00000588302.5:ENST00000586752.5:ENST00000590964.5:ENST00000588822.1:ENST00000586200.1:ENST00000589581.1:ENST00000587459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.99507	3.663185	4.3313	0.00637824	0.00209984	0.0449937	0.0204266
chr7	128091836	128091881	8519374	0	+	0.533333	(0.53,0.59]	chr7	649822	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5:ENST00000485871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	88	2	3.44509	3.6631299999999998	3.88117	8.31409e-5	5.52702e-7	0.00171126	2.41518e-5
chr1	20723015	20723070	882957	0	-	0.581818	(0.53,0.59]	chr1	91283	1	SS3_PROX	SS3_PROX:INTRON	SH2D5	ENSG00000189410.12	ENST00000444387.7:ENST00000460804.5:ENST00000375031.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.0404	3.662975	5.28555	0.0362529	4.85075e-9	0.148525	4.13068e-7
chr10	74118268	74118368	11117650	0	+	0.4	(0.39,0.42]	chr10	846311	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	3.23174	3.662965	4.09419	2.82122e-4	2.95839e-5	0.00415762	7.34143e-4
chr1	45615012	45615106	175151	0	+	0.542553	(0.53,0.59]	chr1	22755	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000527932.1:ENST00000534450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	124	2	2.83542	3.662835	4.49025	1.95776e-4	3.04459e-9	0.00310806	3.01533e-7
chr2	108712443	108712534	2832554	0	-	0.527473	(0.49,0.53]	chr2	252492	3	EXON_PSEUDO	EXON_PSEUDO	RPL10P5	ENSG00000235644.1	ENST00000427719.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	74	2	2.10817	3.66261	5.21705	0.00798134	6.26966e-9	0.0527008	5.16133e-7
chr1	19304050	19304137	877675	0	-	0.402299	(0.39,0.42]	chr1	90627	2	UTR3	UTR3:EXON_MRNA	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	3.08949	3.6625500000000004	4.23561	1.31388e-4	1.16386e-5	0.00226623	3.43116e-4
chr20	38011609	38011705	17962664	0	-	0.520833	(0.49,0.53]	chr20	1522288	2	CDS	CDS:EXON_MRNA	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.64528	3.6624999999999996	4.67972	0.0202736	6.94757e-4	0.0984041	0.00876781
chr8	129841944	129842042	10088429	0	-	0.346939	(0.33,0.36]	chr8	758466	25	UTR3	UTR3:EXON_MRNA	CYRIB	ENSG00000153310.19	ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	61	2	3.19963	3.6624849999999998	4.12534	2.93591e-5	6.92433e-7	7.31344e-4	2.92467e-5
chr11	61786143	61786241	11971250	0	+	0.673469	(0.59,1]	chr11	917369	1	UTR3	UTR3:EXON_MRNA	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1:ENST00000389602.4:ENST00000675345.1:ENST00000675792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.42639	3.6624800000000004	4.89857	0.0409084	0.00182139	0.163285	0.0176016
chrX	154533034	154533128	19278698	0	-	0.595745	(0.59,1]	chrX	1638548	2	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000490651.1:ENST00000439227.5:ENST00000440967.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.42639	3.6624800000000004	4.89857	0.0409084	0.00182139	0.163285	0.0176016
chr7	93208579	93208678	8927812	0	-	0.434343	(0.42,0.455]	chr7	681279	1	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.2972	3.6624600000000003	4.02772	1.93851e-4	4.30844e-5	0.00307904	0.00100091
chrX	47142583	47142663	19059798	0	-	0.575	(0.53,0.59]	chrX	1619805	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFB11	ENSG00000147123.11	ENST00000377811.4:ENST00000276062.8	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	3.56863	3.6623900000000003	3.75615	2.16536e-4	3.93456e-5	0.00361336	8.48445e-4
chr10	99405807	99405860	11657511	0	-	0.528302	(0.49,0.53]	chr10	888037	2	CDS	CDS:EXON_MRNA	GOT1	ENSG00000120053.12	ENST00000370508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.38097	3.6623	4.94363	0.0425419	2.3417e-4	0.167547	0.00355764
chr12	24894341	24894408	13256510	0	-	0.507463	(0.49,0.53]	chr12	1038898	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.38097	3.6623	4.94363	0.0425419	2.3417e-4	0.167547	0.00355764
chr17	79833958	79834058	16702948	0	-	0.51	(0.49,0.53]	chr17	1376484	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CBX4	ENSG00000141582.15	ENST00000269397.9	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.38097	3.6623	4.94363	0.0425419	2.3417e-4	0.167547	0.00355764
chr2	24816645	24816731	1682585	0	+	0.5	(0.49,0.53]	chr2	164489	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5:ENST00000395845.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.38097	3.6623	4.94363	0.0425419	2.3417e-4	0.167547	0.00355764
chr10	59792320	59792419	11517222	0	-	0.30303	(0.29,0.33]	chr10	877718	37	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	3.26422	3.66224	4.06026	2.56761e-4	2.10229e-6	0.00385453	8.23849e-5
chr11	3686120	3686194	12237822	0	-	0.513514	(0.49,0.53]	chr11	945510	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000524563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.04107	3.6621949999999996	4.28332	0.00533879	0.00338762	0.0392268	0.0288632
chr11	63631039	63631125	12414830	0	-	0.511628	(0.49,0.53]	chr11	962199	1	CDS	CDS:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.04107	3.6621949999999996	4.28332	0.00533879	0.00338762	0.0392268	0.0288632
chr2	131148958	131149057	2065748	0	+	0.525253	(0.49,0.53]	chr2	194095	23	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.04107	3.6621949999999996	4.28332	0.00533879	0.00338762	0.0392268	0.0288632
chr3	50118738	50118832	3464548	0	+	0.5	(0.49,0.53]	chr3	302741	4	UTR3	UTR3:EXON_MRNA	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.04107	3.6621949999999996	4.28332	0.00533879	0.00338762	0.0392268	0.0288632
chr5	119121054	119121139	6175130	0	+	0.505882	(0.49,0.53]	chr5	481626	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.04107	3.6621949999999996	4.28332	0.00533879	0.00338762	0.0392268	0.0288632
chr4	17623600	17623698	4734382	0	+	0.479592	(0.455,0.49]	chr4	392800	1	CDS	CDS:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.30384	3.6621200000000003	4.0204	0.00736097	0.00184955	0.0490627	0.0178046
chr6	159785899	159785997	8049136	0	-	0.357143	(0.33,0.36]	chr6	615287	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1:ENST00000537390.5:ENST00000536394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	74	2	2.35258	3.66207	4.97156	1.79489e-4	4.09248e-8	0.00290421	2.87331e-6
chr16	20770034	20770134	15582726	0	+	0.45	(0.42,0.455]	chr16	1234737	1	CDS_START	CDS_START:CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000561584.5:ENST00000564701.1:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.92513	3.6620349999999995	4.39894	3.39829e-4	3.61951e-6	0.00479167	1.29307e-4
chr11	118602007	118602100	12159748	0	+	0.473118	(0.455,0.49]	chr11	937279	4	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	12	126	2	3.06227	3.66203	4.26179	7.63601e-7	2.27015e-7	3.17983e-5	1.27192e-5
chr17	1678584	1678652	16401586	0	-	0.441176	(0.42,0.455]	chr17	1334945	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.03532	3.66157	5.28782	0.040947	3.65299e-5	0.163285	7.95843e-4
chr7	135927847	135927946	9085559	0	-	0.363636	(0.36,0.39]	chr7	693646	12	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	27	281	2	3.58142	3.661555	3.74169	1.53874e-9	2.72834e-10	1.66656e-7	3.31316e-8
chr6	166948565	166948625	8083430	0	-	0.416667	(0.39,0.42]	chr6	616978	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	2.62131	3.661345	4.70138	0.00609677	4.11166e-7	0.0439136	1.87588e-5
chr10	51696447	51696543	11490805	0	-	0.375	(0.36,0.39]	chr10	876944	11	UTR3	UTR3:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.45656	3.661295	4.86603	0.0100637	1.68962e-4	0.0624019	0.00297945
chrX	142203057	142203149	19261778	0	-	0.521739	(0.49,0.53]	chrX	1636101	2	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.64246	3.6610899999999997	4.67972	6.94757e-4	5.94013e-4	0.00876781	0.00745979
chr1	55063426	55063484	203847	0	+	0.655172	(0.59,1]	chr1	26180	2	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	3.65509	3.661065	3.66704	6.16458e-4	5.95213e-4	0.00822794	0.00746384
chr19	1432601	1432690	17193233	0	+	0.629214	(0.59,1]	chr19	1412180	2	CDS	CDS:EXON_MRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000592453.2:ENST00000589484.5:ENST00000585485.2:ENST00000589874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.03921	3.6610250000000004	5.28284	0.0371471	4.04404e-4	0.151849	0.00550292
chr19	1598133	1598229	17419421	0	-	0.614583	(0.59,1]	chr19	1452630	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AC005943.2:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	44	2	2.03921	3.6610250000000004	5.28284	0.0371471	4.04404e-4	0.151849	0.00550292
chr15	55360174	55360271	15294015	0	-	0.329897	(0.29,0.33]	chr15	1207173	7	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CCPG1:DNAAF4-CCPG1	ENSG00000260916.8:ENSG00000261771.5	ENST00000442196.8:ENST00000565113.5:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1:ENST00000568592.1:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	36	2	3.07782	3.660845	4.24387	0.00263476	4.58926e-5	0.0239118	9.56296e-4
chr18	46098131	46098231	17103955	0	-	0.74	(0.59,1]	chr18	1404406	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	172	2	3.26257	3.6607700000000003	4.05897	9.38078e-5	6.09906e-7	0.00187143	2.62406e-5
chr19	1497479	1497569	17193671	0	+	0.7	(0.59,1]	chr19	1412298	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.24689	3.66071	5.07453	0.00890458	0.00117617	0.0565003	0.0132131
chr2	26034083	26034170	1684682	0	+	0.678161	(0.59,1]	chr2	164704	1	UTR5	UTR5:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	35	2	3.17616	3.660495	4.14483	0.0183207	0.00434232	0.0945306	0.0339139
chr5	179806771	179806866	7002467	0	-	0.578947	(0.53,0.59]	chr5	536378	3	UTR5	UTR5:EXON_MRNA	MGAT4B	ENSG00000161013.17	ENST00000292591.12:ENST00000518168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.36244	3.6603449999999995	4.95825	0.0131162	2.87508e-4	0.073569	0.00457439
chr11	10508517	10508612	12270802	0	-	0.4	(0.39,0.42]	chr11	948737	3	UTR5	UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	27	325	2	3.24293	3.66024	4.07755	3.4903e-8	4.71745e-12	2.50957e-6	8.93018e-10
chr9	92049959	92050013	10735817	0	-	0.481481	(0.455,0.49]	chr9	812101	1	CDS	CDS:UTR3:EXON_MRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.85172	3.66015	4.46858	0.010864	2.38087e-6	0.0643837	8.3081e-5
chr3	13351929	13351980	4046568	0	-	0.568627	(0.53,0.59]	chr3	339625	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000479519.5:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.56002	3.6601350000000004	4.76025	0.00634904	3.4642e-7	0.0446708	1.61837e-5
chr12	6531774	6531864	12713572	0	+	0.377778	(0.36,0.39]	chr12	986632	5	UTR3	UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.48922	3.6598699999999997	4.83052	0.0110399	3.15227e-4	0.0652374	0.00452711
chr16	53238342	53238423	15666735	0	+	0.37037	(0.36,0.39]	chr16	1245143	1	CDS	CDS:UTR5:EXON_MRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5:ENST00000565803.2:ENST00000219084.10:ENST00000569225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.38564	3.659725	4.93381	0.0476159	1.90009e-4	0.17993	0.00302753
chr6	63211656	63211719	7204406	0	+	0.444444	(0.42,0.455]	chr6	556452	1	CDS	CDS:EXON_MRNA	FKBP1C	ENSG00000198225.5	ENST00000370659.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.36247	3.659535	4.9566	0.0462889	2.10615e-4	0.176878	0.00327655
chr16	29697510	29697609	15626491	0	+	0.545455	(0.53,0.59]	chr16	1239217	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1:ENST00000564967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	79	2	3.43955	3.659195	3.87884	1.11478e-4	3.45609e-6	0.00213212	1.13431e-4
chr17	78164094	78164184	16367655	0	+	0.655556	(0.59,1]	chr17	1329541	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	C17orf99	ENSG00000187997.11	ENST00000340363.9:ENST00000591995.1:ENST00000451352.3:ENST00000586029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	3.53648	3.65918	3.78188	0.00107706	3.33896e-4	0.0124943	0.00472923
chr3	13375503	13375572	4046812	0	-	0.507246	(0.49,0.53]	chr3	339672	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	77	2	3.28793	3.659135	4.03034	4.26396e-5	3.28736e-6	9.97006e-4	1.08855e-4
chr17	42310730	42310823	16228137	0	+	0.505376	(0.49,0.53]	chr17	1312855	1	UTR3	UTR3:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	92	2	2.85963	3.658985	4.45834	7.04784e-5	4.55418e-8	0.00135879	3.14461e-6
chr12	56596082	56596179	13351642	0	-	0.247423	[0,0.29]	chr12	1051592	6	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.55853	3.6588700000000003	4.75921	0.007538	2.77035e-4	0.0497903	0.00444204
chr6	41935574	41935666	7701866	0	-	0.521739	(0.49,0.53]	chr6	590673	8	UTR3	UTR3:EXON_MRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.54558	3.6587650000000003	4.77195	0.0024326	2.57118e-7	0.0228485	1.25706e-5
chr5	127524627	127524725	6204748	0	+	0.510204	(0.49,0.53]	chr5	483421	2	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	9	121	2	3.51696	3.65842	3.79988	8.90867e-7	1.94449e-7	4.02766e-5	9.92968e-6
chr17	59668776	59668858	16295317	0	+	0.390244	(0.39,0.42]	chr17	1321681	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	15	193	2	3.15137	3.65807	4.16477	1.93604e-6	5.34164e-11	7.67629e-5	7.78853e-9
chr1	151401238	151401296	471586	0	+	0.637931	(0.59,1]	chr1	48194	1	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000290541.7:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1:ENST00000466425.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.44587	3.65782	4.86977	0.0105307	0.00246014	0.0644466	0.0230058
chr1	203727482	203727571	669752	0	+	0.595506	(0.59,1]	chr1	67496	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000458092.5:ENST00000466407.1:ENST00000356729.5:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.44587	3.65782	4.86977	0.0105307	0.00246014	0.0644466	0.0230058
chr6	26031960	26032060	7646930	0	-	0.62	(0.59,1]	chr6	582489	1	CDS_START	CDS_START:CDS:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	16	438	2	3.05086	3.65776	4.26466	6.33457e-6	3.63563e-9	1.88713e-4	3.50593e-7
chr17	42779334	42779422	16229789	0	+	0.465909	(0.455,0.49]	chr17	1313397	4	UTR3	UTR3:EXON_MRNA	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.37741	3.6576750000000002	3.93794	1.27402e-4	7.43966e-5	0.00241206	0.00142165
chr2	195680619	195680715	2290371	0	+	0.447917	(0.42,0.455]	chr2	207584	6	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.70611	3.6575349999999998	4.60896	0.00397496	8.72604e-7	0.0322851	3.55816e-5
chr10	43387498	43387593	11461768	0	-	0.536842	(0.53,0.59]	chr10	873955	9	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	3.61089	3.65741	3.70393	1.64739e-5	4.22829e-6	4.57148e-4	1.34682e-4
chr1	161448189	161448289	1333678	0	-	0.73	(0.59,1]	chr1	136938	73	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	401	10145	2	3.61554	3.6572750000000003	3.69901	7.13365e-10	6.79195e-10	8.15319e-8	7.75811e-8
chr10	74122130	74122229	11575815	0	-	0.40404	(0.39,0.42]	chr10	881667	20	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.88836	3.6571	4.42584	0.0102432	0.00199429	0.062872	0.0189001
chr15	58825505	58825604	14957068	0	+	0.393939	(0.39,0.42]	chr15	1175535	33	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3:ENST00000559745.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.88836	3.6571	4.42584	0.0102432	0.00199429	0.062872	0.0189001
chr12	909678	909777	12681681	0	+	0.444444	(0.42,0.455]	chr12	984184	10	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.51538	3.657095	3.79881	1.65328e-4	5.28826e-5	0.0029267300000000002	0.00107799
chr19	6441144	6441242	17442468	0	-	0.428571	(0.42,0.455]	chr19	1456911	12	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	110	2	3.35959	3.65688	3.95417	7.27746e-7	2.4343e-7	3.04215e-5	1.34798e-5
chr11	5343331	5343424	12241527	0	-	0.451613	(0.42,0.455]	chr11	946162	8	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	6	87	2	3.44537	3.656765	3.86816	8.6897e-5	9.42535e-8	0.00177086	5.30719e-6
chr1	23802462	23802562	897499	0	-	0.45	(0.42,0.455]	chr1	93236	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	HMGCL	ENSG00000117305.15	ENST00000374490.8:ENST00000374487.6:ENST00000436439.6:ENST00000235958.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr1	174994079	174994174	559137	0	+	0.442105	(0.42,0.455]	chr1	58805	6	UTR3	UTR3:EXON_MRNA	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000489615.5:ENST00000392064.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr10	119522152	119522251	11718353	0	-	0.454545	(0.42,0.455]	chr10	894020	58	INTRON	INTRON	RGS10	ENSG00000148908.15	ENST00000369103.3:ENST00000392865.5:ENST00000369101.7:ENST00000469575.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr12	8941268	8941360	13197227	0	-	0.434783	(0.42,0.455]	chr12	1033916	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr12	51000312	51000365	13330143	0	-	0.433962	(0.42,0.455]	chr12	1046773	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC11A2	ENSG00000110911.17	ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000547510.5:ENST00000546488.5:ENST00000547579.5:ENST00000550714.5:ENST00000547732.5:ENST00000549110.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr14	49622226	49622321	14275617	0	+	0.452632	(0.42,0.455]	chr14	1115895	10	CDS	CDS:EXON_MRNA	MGAT2	ENSG00000168282.6	ENST00000305386.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr14	54424450	54424549	14635463	0	-	0.434343	(0.42,0.455]	chr14	1146393	10	UTR3	UTR3:EXON_MRNA	CNIH1	ENSG00000100528.12	ENST00000216416.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr15	22727165	22727227	14809699	0	+	0.435484	(0.42,0.455]	chr15	1161984	2	EXON_PSEUDO	EXON_PSEUDO	PDCD6IPP1	ENSG00000275325.4	ENST00000622242.4	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr15	30882652	30882748	15187939	0	-	0.427083	(0.42,0.455]	chr15	1195470	5	EXON_PSEUDO	EXON_PSEUDO	RP11-540B6.2	ENSG00000260382.1	ENST00000561684.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr19	46466977	46467075	17593177	0	-	0.428571	(0.42,0.455]	chr19	1481031	6	UTR3	UTR3:EXON_MRNA	PNMA8A	ENSG00000182013.18	ENST00000438932.2:ENST00000313683.15	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr2	32513006	32513080	1714009	0	+	0.445946	(0.42,0.455]	chr2	168268	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1:ENST00000496555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr2	37223323	37223401	2598147	0	-	0.423077	(0.42,0.455]	chr2	234060	3	CDS	CDS:EXON_MRNA	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr21	28971270	28971357	18201531	0	-	0.436782	(0.42,0.455]	chr21	1544627	1	CDS	CDS:EXON_MRNA	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10:ENST00000389195.7:ENST00000483326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr4	72965177	72965240	4885809	0	+	0.428571	(0.42,0.455]	chr4	402181	1	EXON_SMALL	EXON_SMALL	RNU4ATAC9P	ENSG00000252955.1	ENST00000517146.1	snRNA	snRNA	snRNA	snRNA	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr5	130990073	130990162	6219896	0	+	0.449438	(0.42,0.455]	chr5	484005	3	EXON_PSEUDO	EXON_PSEUDO	RP11-114H7.1	ENSG00000244192.1	ENST00000498453.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr6	36493990	36494090	7681295	0	-	0.44	(0.42,0.455]	chr6	588939	2	UTR3	UTR3:EXON_MRNA	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr7	26184532	26184627	8182972	0	+	0.431579	(0.42,0.455]	chr7	624398	1	CDS	CDS:EXON_MRNA	NFE2L3	ENSG00000050344.9	ENST00000056233.4:ENST00000606261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr7	130561126	130561221	9064784	0	-	0.452632	(0.42,0.455]	chr7	692421	2	CDS	CDS:EXON_MRNA	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000617523.1:ENST00000330992.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr8	90366866	90366966	9475149	0	+	0.44	(0.42,0.455]	chr8	720802	148	INTRON	INTRON	LINC00534	ENSG00000253394.6	ENST00000662145.1:ENST00000655523.1:ENST00000517400.6:ENST00000658299.1:ENST00000663329.1:ENST00000658342.1:ENST00000523283.5:ENST00000655219.1:ENST00000662692.1:ENST00000667296.1:ENST00000667565.1:ENST00000523406.2:ENST00000659030.1:ENST00000653734.1:ENST00000654785.1:ENST00000524361.5:ENST00000668745.1:ENST00000661519.1:ENST00000671657.1:ENST00000655123.1:ENST00000663098.1:ENST00000670903.1:ENST00000654946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr9	33344068	33344128	10234958	0	+	0.45	(0.42,0.455]	chr9	769462	1	CDS	CDS:EXON_MRNA	NFX1	ENSG00000086102.19	ENST00000379521.8:ENST00000379540.8:ENST00000318524.6:ENST00000466971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr9	93497534	93497599	10362623	0	+	0.446154	(0.42,0.455]	chr9	780106	2	CDS	CDS:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chrX	49607081	49607178	18695378	0	+	0.443299	(0.42,0.455]	chrX	1595093	12	UTR3	UTR3:EXON_MRNA	GAGE1	ENSG00000205777.18	ENST00000381709.6	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	11	2	3.46169	3.6565950000000003	3.8515	0.03884	0.0119089	0.149227	0.0686664
chr3	184150160	184150252	3947927	0	+	0.565217	(0.53,0.59]	chr3	331911	6	EXON_PSEUDO	EXON_PSEUDO	RP11-778D9.4	ENSG00000228205.1	ENST00000433853.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	54	2	3.44509	3.65659	3.86809	1.18973e-4	8.31409e-5	0.00207755	0.00171126
chr12	130876120	130876218	13154862	0	+	0.367347	(0.36,0.39]	chr12	1027987	3	UTR3	UTR3:EXON_MRNA	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000541679.7	protein_coding	protein_coding	protein_coding	protein_coding	17	181	2	3.36348	3.656415	3.94935	7.95852e-8	4.53453e-10	5.10384e-6	5.19925e-8
chr15	43746639	43746706	14896286	0	+	0.641791	(0.59,1]	chr15	1171241	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDIA3	ENSG00000167004.13	ENST00000469684.1:ENST00000300289.10:ENST00000434494.5:ENST00000446523.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	3.41536	3.65633	3.8973	0.00164655	2.15122e-4	0.0163443	0.00360503
chr1	247876291	247876389	816517	0	+	0.377551	(0.36,0.39]	chr1	80727	5	CDS	CDS:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.88762	3.656325	4.42503	0.00133228	4.35345e-4	0.0144372	0.005869
chr1	30964752	30964831	916614	0	-	0.544304	(0.53,0.59]	chr1	96011	2	CDS	CDS:EXON_MRNA:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	3.43342	3.65613	3.87884	1.11478e-4	8.93729e-5	0.00213212	0.00165837
chrX	153694803	153694889	18915637	0	+	0.697674	(0.59,1]	chrX	1611198	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	107	2	3.34557	3.65606	3.96655	1.54087e-4	5.23013e-5	0.00279744	0.0010672
chr1	110899467	110899558	405638	0	+	0.417582	(0.39,0.42]	chr1	39842	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	3.59464	3.656015	3.71739	3.6617e-5	1.41698e-5	8.82767e-4	3.66245e-4
chr6	27147415	27147515	7104167	0	+	0.56	(0.53,0.59]	chr6	543294	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	H2AC12:MIR3143	ENSG00000274997.2:ENSG00000265565.1	ENST00000377459.3:ENST00000584253.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	16	236	2	3.52743	3.655535	3.78364	6.41063e-8	1.02097e-8	4.224e-6	7.89931e-7
chr3	120688625	120688725	4405860	0	-	0.39	(0.36,0.39]	chr3	365420	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RABL3	ENSG00000144840.10	ENST00000273375.8:ENST00000648525.1:ENST00000473654.5:ENST00000485161.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.44447	3.65525	4.86603	0.0364669	1.68962e-4	0.145024	0.00297945
chr1	155140061	155140140	1306423	0	-	0.670886	(0.59,1]	chr1	131763	1	CDS	CDS:EXON_MRNA	DPM3	ENSG00000179085.8	ENST00000341298.3:ENST00000368400.5:ENST00000368399.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.59461	3.6548549999999995	4.7151	0.0259455	0.00412279	0.117079	0.0325842
chr16	24540236	24540333	15600559	0	+	0.649485	(0.59,1]	chr16	1236975	8	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000567686.5:ENST00000568015.5:ENST00000319715.10:ENST00000568316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.59461	3.6548549999999995	4.7151	0.0259455	0.00412279	0.117079	0.0325842
chr19	10119859	10119918	17457734	0	-	0.610169	(0.59,1]	chr19	1460409	1	UTR5	UTR5:EXON_MRNA	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5:ENST00000589009.5:ENST00000593066.5:ENST00000593095.5:ENST00000587993.5:ENST00000587681.5:ENST00000592485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.59461	3.6548549999999995	4.7151	0.0259455	0.00412279	0.117079	0.0325842
chr17	5433014	5433114	16421506	0	-	0.49	(0.455,0.49]	chr17	1338172	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	81	2	2.82961	3.6548350000000003	4.48006	2.1638e-4	3.88353e-8	0.00361336	2.4824e-6
chr9	27327598	27327697	10616217	0	-	0.353535	(0.33,0.36]	chr9	802805	25	UTR3	UTR3:EXON_MRNA	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.36959	3.65478	3.93997	0.0014168	9.37165e-5	0.0145694	0.00186979
chr6	157943130	157943227	7516750	0	+	0.257732	[0,0.29]	chr6	573600	4	UTR3	UTR3:EXON_MRNA	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	70	2	3.08299	3.654725	4.22646	3.30847e-6	7.29804e-7	1.09482e-4	3.41021e-5
chr9	4860775	4860875	10166158	0	+	0.36	(0.33,0.36]	chr9	765575	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000448872.6:ENST00000445485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	3.473	3.6544299999999996	3.83586	8.77304e-4	1.7178e-4	0.0101202	0.00302124
chr11	12262382	12262479	11805482	0	+	0.42268	(0.42,0.455]	chr11	904117	24	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MICAL2	ENSG00000133816.18	ENST00000683283.1:ENST00000256194.8:ENST00000527546.5:ENST00000675839.1:ENST00000646065.1:ENST00000530691.5:ENST00000525618.5:ENST00000530021.5:ENST00000525444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.91373	3.654205	4.39468	0.00892357	0.00240483	0.0567495	0.0217482
chr2	201085458	201085515	2310239	0	+	0.421053	(0.42,0.455]	chr2	209055	1	CDS	CDS:EXON_MRNA	NDUFB3	ENSG00000119013.10	ENST00000450023.6:ENST00000237889.9:ENST00000433898.5:ENST00000684175.1:ENST00000682325.1:ENST00000454214.1:ENST00000684420.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.91373	3.654205	4.39468	0.00892357	0.00240483	0.0567495	0.0217482
chr2	12742346	12742443	1645754	0	+	0.546392	(0.53,0.59]	chr2	162750	17	UTR3	UTR3:EXON_MRNA	TRIB2	ENSG00000071575.12	ENST00000381465.2:ENST00000155926.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.64475	3.654115	4.66348	0.00453071	0.00107799	0.0351187	0.0118238
chr17	47665056	47665107	16251787	0	+	0.568627	(0.53,0.59]	chr17	1316686	1	CDS	CDS:EXON_MRNA:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.27113	3.65409	5.03705	0.0178853	0.00020199200000000001	0.0918323	0.00317801
chr20	35653075	35653165	17954988	0	-	0.5	(0.49,0.53]	chr20	1521107	6	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.41364	3.653845	4.89405	0.0112538	2.57983e-4	0.0665375	0.00419998
chr9	34635318	34635417	10637512	0	-	0.535354	(0.53,0.59]	chr9	804341	7	UTR3	UTR3:EXON_MRNA	SIGMAR1	ENSG00000147955.18	ENST00000277010.9:ENST00000679597.1:ENST00000353468.4:ENST00000378892.5:ENST00000497006.2:ENST00000680104.1:ENST00000681409.1:ENST00000680730.1:ENST00000680244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.30943	3.65381	3.99819	0.0111308	0.0018255	0.0665375	0.0183913
chr8	47834262	47834329	9816106	0	-	0.492537	(0.49,0.53]	chr8	742609	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.51671	3.653785	4.79086	0.00768763	4.20783e-4	0.050396	0.00611538
chr17	28898716	28898804	16488525	0	-	0.556818	(0.53,0.59]	chr17	1348388	3	CDS	CDS:EXON_MRNA	DHRS13	ENSG00000167536.14	ENST00000378895.9:ENST00000394901.7:ENST00000426464.2	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.35511	3.65372	4.95233	0.0445399	3.02711e-4	0.172163	0.00439897
chr6	160079648	160079717	7528699	0	+	0.565217	(0.53,0.59]	chr6	574914	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.35511	3.65372	4.95233	0.0445399	3.02711e-4	0.172163	0.00439897
chr1	167773265	167773316	524430	0	+	0.529412	(0.49,0.53]	chr1	56267	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.23006	3.653625	4.07719	0.0074411	0.00253719	0.0492519	0.0233955
chr1	32160639	32160703	126905	0	+	0.421875	(0.42,0.455]	chr1	15594	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000469790.1:ENST00000446515.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.50649	3.6535649999999995	4.80064	0.0302857	3.0479e-4	0.130016	0.00472028
chr11	17372086	17372167	11827947	0	+	0.555556	(0.53,0.59]	chr11	905451	2	CDS	CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.43852	3.6533749999999996	4.86823	0.00373745	4.35895e-4	0.0303359	0.00623608
chr20	17968702	17968795	17916855	0	-	0.655914	(0.59,1]	chr20	1516386	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SNX5:OVOL2	ENSG00000089006.17:ENSG00000125850.11	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000474883.5:ENST00000469704.1:ENST00000486776.5:ENST00000606602.1:ENST00000606557.1:ENST00000481323.1:ENST00000486039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	3.19	3.65336	4.11672	0.0222273	0.0039188	0.105595	0.0314356
chr6	30703917	30704016	7659036	0	-	0.59596	(0.59,1]	chr6	584223	4	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000489540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	34	2	3.19	3.65336	4.11672	0.0222273	0.0039188	0.105595	0.0314356
chr1	226362025	226362083	1533022	0	-	0.465517	(0.455,0.49]	chr1	153421	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000491816.1:ENST00000468608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	3.65079	3.6531200000000004	3.65545	3.61776e-4	3.50134e-4	0.00544764	0.0049086
chr6	28903583	28903680	7652688	0	-	0.505155	(0.49,0.53]	chr6	583182	7	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.56183	3.653105	4.74438	0.0261296	5.91752e-4	0.118976	0.00743488
chr6	26124232	26124332	7101131	0	+	0.63	(0.59,1]	chr6	542792	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000377791.4:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	558	2	2.96882	3.652855	4.33689	6.06325e-6	7.4185e-10	1.82374e-4	8.83927e-8
chr2	43888500	43888599	2622915	0	-	0.262626	[0,0.29]	chr2	236084	24	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.40395	3.652845	4.90174	0.0210081	6.77607e-8	0.101116	4.00822e-6
chr8	43125941	43126040	9308533	0	+	0.323232	(0.29,0.33]	chr8	712880	32	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.22218	3.65274	5.0833	0.023782	4.57622e-5	0.109413	0.00105479
chrX	120163687	120163787	18843941	0	+	0.5	(0.49,0.53]	chrX	1605750	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	3.52743	3.6522699999999997	3.77711	7.08867e-6	5.57919e-8	2.27895e-4	3.38574e-6
chr6	7288019	7288116	7586873	0	-	0.463918	(0.455,0.49]	chr6	578694	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	90	2	3.02161	3.652225	4.28284	2.07727e-4	1.4648e-8	0.00351752	1.07724e-6
chr15	75322094	75322194	15376651	0	-	0.4	(0.39,0.42]	chr15	1215649	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ANP32BP1	ENSG00000259790.1	ENST00000564205.1:ENST00000568553.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	32	2	2.81106	3.65215	4.49324	0.00108192	6.4431e-4	0.0124943	0.00799617
chr1	28742813	28742910	118410	0	+	0.453608	(0.42,0.455]	chr1	14542	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.06293	3.6521299999999997	4.24133	0.00492128	0.00326918	0.0366648	0.0282494
chr1	158525641	158525739	492370	0	+	0.44898	(0.42,0.455]	chr1	52527	21	EXON_PSEUDO	EXON_PSEUDO	HSP90AA3P	ENSG00000231434.1	ENST00000436135.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	3.06293	3.6521299999999997	4.24133	0.00492128	0.00326918	0.0366648	0.0282494
chr12	51103669	51103763	13330794	0	-	0.43617	(0.42,0.455]	chr12	1046914	1	CDS	CDS:EXON_MRNA:INTRON	TFCP2	ENSG00000135457.10	ENST00000257915.10:ENST00000549867.5:ENST00000546822.1:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.06293	3.6521299999999997	4.24133	0.00492128	0.00326918	0.0366648	0.0282494
chr12	57822806	57822905	13358227	0	-	0.434343	(0.42,0.455]	chr12	1053218	30	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7:ENST00000548823.1:ENST00000547169.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.06293	3.6521299999999997	4.24133	0.00492128	0.00326918	0.0366648	0.0282494
chr16	11869624	11869724	15856843	0	-	0.44	(0.42,0.455]	chr16	1266839	16	UTR3	UTR3:EXON_MRNA	GSPT1	ENSG00000103342.13	ENST00000434724.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.06293	3.6521299999999997	4.24133	0.00492128	0.00326918	0.0366648	0.0282494
chr9	33053206	33053290	10631242	0	-	0.440476	(0.42,0.455]	chr9	803377	2	CDS	CDS:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.06293	3.6521299999999997	4.24133	0.00492128	0.00326918	0.0366648	0.0282494
chr4	127832874	127832973	5104325	0	+	0.40404	(0.39,0.42]	chr4	413792	1	UTR3	UTR3:EXON_MRNA	HSPA4L	ENSG00000164070.12	ENST00000508776.5:ENST00000296464.9:ENST00000505726.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.0503	3.652025	4.25375	0.00570576	1.03195e-5	0.0424438	2.84226e-4
chrX	24788391	24788487	19007598	0	-	0.458333	(0.455,0.49]	chrX	1617324	1	EXON_PSEUDO	EXON_PSEUDO	EEF1B2P3	ENSG00000232472.1	ENST00000447718.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	31	2	1.92777	3.6519299999999997	5.37609	0.0286531	2.05373e-5	0.128685	4.97369e-4
chr12	27755825	27755919	12803809	0	+	0.468085	(0.455,0.49]	chr12	994444	5	UTR3	UTR3:EXON_MRNA	MRPS35	ENSG00000061794.13	ENST00000081029.8:ENST00000538315.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.49033	3.65154	3.81275	0.0138827	7.92678e-4	0.0760883	0.00933379
chr9	127691649	127691748	10475568	0	+	0.535354	(0.53,0.59]	chr9	789241	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	3.29875	3.6513400000000003	4.00393	0.0108084	0.00191422	0.064368	0.018324
chrX	40074301	40074398	19045135	0	-	0.71134	(0.59,1]	chrX	1618754	21	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.16581	3.6513	5.13679	0.00657102	9.28022e-4	0.0458787	0.0111748
chr5	69177631	69177718	6019376	0	+	0.310345	(0.29,0.33]	chr5	471261	1	UTR3	UTR3:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000256442.10:ENST00000507798.1:ENST00000513102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.49936	3.6512899999999995	4.80322	0.00917022	2.14303e-4	0.0580029	0.00359478
chr6	30676485	30676583	7658820	0	-	0.408163	(0.39,0.42]	chr6	584161	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615892.4:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	69	2	3.38738	3.65123	3.91508	1.35138e-4	3.50367e-7	0.0025017	1.63119e-5
chr4	82821036	82821108	5496441	0	-	0.416667	(0.39,0.42]	chr4	440165	1	CDS	CDS:EXON_MRNA:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	50	2	1.8416	3.6512249999999997	5.46085	0.00442246	5.81708e-6	0.0339842	1.921e-4
chrX	23686284	23686335	18616072	0	+	0.372549	(0.36,0.39]	chrX	1589696	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PRDX4	ENSG00000123131.13	ENST00000379341.9:ENST00000439422.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.38564	3.6512200000000004	4.9168	0.0476159	6.76244e-8	0.17993	4.00219e-6
chr6	28903971	28904069	7652692	0	-	0.55102	(0.53,0.59]	chr6	583182	11	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.62204	3.6509850000000004	3.67993	4.3021e-4	3.22778e-4	0.00620274	0.0046122
chr1	21050865	21050929	886051	0	-	0.609375	(0.59,1]	chr1	91645	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	EIF4G3	ENSG00000075151.23	ENST00000374935.7:ENST00000264211.12:ENST00000602326.5:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	1.96394	3.65097	5.338	0.0453144	3.196e-4	0.174798	0.00457916
chr5	17354345	17354438	6473547	0	-	0.623656	(0.59,1]	chr5	503559	8	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	FTH1P10	ENSG00000223361.5	ENST00000401830.3:ENST00000430907.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	45	2	2.76006	3.650945	4.54183	0.0070583	0.00330486	0.0478044	0.027613
chr2	65269218	65269315	1854381	0	+	0.443299	(0.42,0.455]	chr2	175984	6	UTR3	UTR3:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	3.3099	3.650775	3.99165	1.04915e-6	1.91751e-7	4.59698e-5	9.81202e-6
chr3	141907220	141907274	3789996	0	+	0.388889	(0.36,0.39]	chr3	323469	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000495216.1:ENST00000482635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	134	2	2.99086	3.6506499999999997	4.31044	3.25198e-4	6.88734e-11	0.00500369	9.77968e-9
chr17	75064027	75064125	16353295	0	+	0.479592	(0.455,0.49]	chr17	1326952	11	UTR3	UTR3:EXON_MRNA	KCTD2	ENSG00000180901.11	ENST00000375286.7:ENST00000322444.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.63872	3.65041	4.6621	0.00510378	7.84472e-4	0.0390492	0.00927662
chr3	52492775	52492872	3478485	0	+	0.484536	(0.455,0.49]	chr3	304739	4	UTR3	UTR3:EXON_MRNA	NISCH	ENSG00000010322.16	ENST00000479054.5:ENST00000345716.9:ENST00000489895.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.63872	3.65041	4.6621	0.00510378	7.84472e-4	0.0390492	0.00927662
chr10	123157804	123157880	11298994	0	+	0.473684	(0.455,0.49]	chr10	861566	2	CDS	CDS:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.52734	3.6502600000000003	4.77318	0.00792433	4.7888e-4	0.0523592	0.00628636
chr1	228097396	228097452	744021	0	+	0.625	(0.59,1]	chr1	75088	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ARF1:MIR3620	ENSG00000143761.16:ENSG00000284163.1	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000482962.5:ENST00000497165.5:ENST00000490705.1:ENST00000584469.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	5	125	2	3.29999	3.6499800000000002	3.99997	1.30803e-4	2.25179e-5	0.00243846	5.35995e-4
chr3	150546743	150546802	3807569	0	+	0.644068	(0.59,1]	chr3	324965	2	UTR5	UTR5:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000463863.5:ENST00000487799.5:ENST00000473499.1:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	97	2	2.53147	3.6499750000000004	4.76848	0.00807544	1.47805e-6	0.0531324	5.56634e-5
chr7	100095807	100095907	8949651	0	-	0.63	(0.59,1]	chr7	683524	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	158	2	3.16223	3.649905	4.13758	5.82431e-5	2.62983e-6	0.00128898	9.04922e-5
chr11	120428068	120428157	12169311	0	+	0.58427	(0.53,0.59]	chr11	938481	1	CDS	CDS:EXON_MRNA	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.86102	3.649825	4.43863	0.00254763	0.0017805	0.0233955	0.0172974
chr15	78929411	78929493	15398666	0	-	0.560976	(0.53,0.59]	chr15	1217577	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1:ENST00000529263.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	31	2	2.86102	3.649825	4.43863	0.00254763	0.0017805	0.0233955	0.0172974
chr16	29859441	29859523	15911641	0	-	0.512195	(0.49,0.53]	chr16	1274568	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CDIPT	ENSG00000103502.14	ENST00000219789.11:ENST00000563893.5:ENST00000567459.1:ENST00000561555.5:ENST00000566113.5:ENST00000569956.5:ENST00000570016.5:ENST00000563415.1:ENST00000564296.5:ENST00000562041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	3.01617	3.649745	4.28332	0.00338762	8.62231e-4	0.0288632	0.0100487
chr6	30562683	30562778	7111344	0	+	0.494737	(0.49,0.53]	chr6	544798	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRR3	ENSG00000204576.12	ENST00000376557.3:ENST00000376560.8:ENST00000481741.5:ENST00000498336.5:ENST00000470703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	47	2	3.15044	3.6493400000000005	4.14824	4.32676e-4	2.04708e-5	0.00583708	5.45523e-4
chr4	75646396	75646456	5472879	0	-	0.466667	(0.455,0.49]	chr4	438370	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000677520.1:ENST00000678932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.3605	3.64922	3.93794	0.00147278	7.43966e-5	0.0157578	0.00142165
chr10	18675216	18675314	10946917	0	+	0.346939	(0.33,0.36]	chr10	833591	1	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.61283	3.649215	4.6856	7.60348e-4	3.92435e-4	0.00908558	0.00583618
chr3	195786433	195786532	4661131	0	-	0.59596	(0.59,1]	chr3	385270	78	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	33	2	3.06258	3.6489399999999996	4.2353	0.0165254	0.00616167	0.0873033	0.0438642
chr1	154251132	154251225	479940	0	+	0.580645	(0.53,0.59]	chr1	49661	2	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	3.49159	3.6488449999999997	3.8061	6.29049e-5	8.37944e-6	0.00135218	2.38248e-4
chrX	120437576	120437675	19196135	0	-	0.363636	(0.36,0.39]	chrX	1631971	12	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	3.2928	3.64867	4.00454	2.65442e-4	1.78485e-6	0.004287	6.50204e-5
chr1	87097839	87097939	341342	0	+	0.51	(0.49,0.53]	chr1	33619	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370551.8:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	3.11892	3.6486300000000003	4.17834	0.00398244	1.74561e-5	0.0322851	4.38078e-4
chr1	152036915	152037004	1295159	0	-	0.730337	(0.59,1]	chr1	129741	1	UTR5	UTR5:EXON_MRNA:INTRON	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.28778	3.6486150000000004	5.00945	0.0556537	0.00149725	0.191528	0.0159607
chr16	3664366	3664459	15830540	0	-	0.655914	(0.59,1]	chr16	1263621	2	CDS	CDS:EXON_MRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.28778	3.6486150000000004	5.00945	0.0556537	0.00149725	0.191528	0.0159607
chr2	197489001	197489071	3106786	0	-	0.4	(0.39,0.42]	chr2	274637	1	CDS	CDS:UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000491249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	120	2	3.12656	3.6485849999999997	4.17061	5.05646e-7	4.26613e-7	2.49522e-5	1.9322e-5
chr1	161454583	161454683	1333742	0	-	0.65	(0.59,1]	chr1	136938	137	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	314	8480	2	3.25494	3.64851	4.04208	1.57052e-8	4.43446e-11	1.14414e-6	7.24191e-9
chr9	111932169	111932264	10420369	0	+	0.389474	(0.36,0.39]	chr9	784479	1	CDS	CDS:EXON_MRNA:PRIMIRNA	UGCG:MIR4668	ENSG00000148154.10:ENSG00000266315.1	ENST00000374279.4:ENST00000582284.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	63	2	2.06832	3.64838	5.22844	0.0122123	4.38129e-9	0.0702898	3.79596e-7
chr4	24548938	24549022	5358922	0	-	0.380952	(0.36,0.39]	chr4	429858	2	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.49441	3.6483299999999996	3.80225	7.81559e-4	1.85308e-4	0.00927662	0.00322093
chr7	44831977	44832074	8800341	0	-	0.381443	(0.36,0.39]	chr7	671367	1	UTR3	UTR3:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.49441	3.6483299999999996	3.80225	7.81559e-4	1.85308e-4	0.00927662	0.00322093
chr11	107805436	107805515	12584989	0	-	0.43038	(0.42,0.455]	chr11	975980	2	CDS	CDS:UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6:ENST00000533664.1:ENST00000375682.8:ENST00000532513.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	3.23707	3.648305	4.05954	0.00617886	2.71467e-4	0.0439741	0.00404536
chr8	38207681	38207766	9292300	0	+	0.576471	(0.53,0.59]	chr8	710681	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5:ENST00000521311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.98881	3.648285	4.30776	0.00407289	2.35204e-4	0.0324137	0.00356397
chr12	54455949	54456017	13343991	0	-	0.338235	(0.33,0.36]	chr12	1049866	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000552336.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	2.44986	3.64814	4.84642	0.00563343	1.14635e-7	0.0422191	6.29236e-6
chr12	104349711	104349810	13059151	0	+	0.474747	(0.455,0.49]	chr12	1017716	14	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	86	2	2.87003	3.64807	4.42611	6.89102e-5	6.1811e-8	0.00146082	3.69893e-6
chr1	44760646	44760702	173999	0	+	0.535714	(0.53,0.59]	chr1	22381	2	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000423289.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.62668	3.64802	4.66936	0.00157636	0.00103174	0.015761	0.0121443
chr2	96277806	96277878	2790284	0	-	0.513889	(0.49,0.53]	chr2	248702	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.8681	3.648	4.4279	0.00196987	0.00175299	0.0193972	0.0171299
chr17	41892278	41892362	16544006	0	-	0.535714	(0.53,0.59]	chr17	1356518	1	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	3.02054	3.6479	4.27526	0.00577011	1.03921e-5	0.0426551	2.85526e-4
chr3	45528389	45528488	3447987	0	+	0.292929	(0.29,0.33]	chr3	300336	39	INTRON	INTRON	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1:ENST00000467936.5:ENST00000485461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	3.31614	3.647775	3.97941	3.2999e-4	5.81801e-5	0.00504024	0.00116944
chr7	155298541	155298619	8632551	0	+	0.589744	(0.53,0.59]	chr7	659263	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000425172.1:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	7	87	2	2.56695	3.6475850000000003	4.72822	2.3382e-4	4.40858e-7	0.00385436	1.99026e-5
chr19	55675635	55675735	17397368	0	+	0.51	(0.49,0.53]	chr19	1448953	2	SS5_PROX	SS5_PROX:INTRON	EPN1	ENSG00000063245.15	ENST00000270460.11:ENST00000085079.11	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.3044	3.6473699999999996	4.99034	0.0509448	1.6002e-4	0.181793	0.00286408
chr17	28700940	28701034	16177231	0	+	0.617021	(0.59,1]	chr17	1305466	1	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000581510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	33	2	2.32455	3.6473500000000003	4.97015	0.0520547	0.00140057	0.193787	0.0144327
chr19	47745721	47745783	17363625	0	+	0.677419	(0.59,1]	chr19	1441387	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOP53	ENSG00000105373.19	ENST00000246802.10:ENST00000594525.5:ENST00000600410.5:ENST00000598681.5:ENST00000599253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.32455	3.6473500000000003	4.97015	0.0520547	0.00140057	0.193787	0.0144327
chr20	35626244	35626340	17954695	0	-	0.65625	(0.59,1]	chr20	1521049	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000498814.1:ENST00000473373.1:ENST00000462352.5:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.32455	3.6473500000000003	4.97015	0.0520547	0.00140057	0.193787	0.0144327
chr1	231564619	231564712	753015	0	+	0.44086	(0.42,0.455]	chr1	76624	2	CDS	CDS:EXON_MRNA:INTRON	TSNAX-DISC1:TSNAX	ENSG00000270106.6:ENSG00000116918.15	ENST00000602634.5:ENST00000602956.5:ENST00000602962.5:ENST00000602885.5:ENST00000602567.1:ENST00000644515.1:ENST00000646525.1:ENST00000647072.1:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.89192	3.64734	4.40276	0.0017618	0.00157686	0.0180053	0.015761
chr16	28735253	28735335	15619340	0	+	0.621951	(0.59,1]	chr16	1238332	2	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5:ENST00000566086.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	35	2	3.30708	3.6472949999999997	3.98751	0.0301044	0.00252451	0.129773	0.0226777
chr17	28898804	28898892	16488526	0	-	0.647727	(0.59,1]	chr17	1348388	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHRS13	ENSG00000167536.14	ENST00000378895.9:ENST00000394901.7:ENST00000426464.2:ENST00000581974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	35	2	3.30708	3.6472949999999997	3.98751	0.0301044	0.00252451	0.129773	0.0226777
chr5	131159446	131159546	6826787	0	-	0.48	(0.455,0.49]	chr5	522062	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000675135.1:ENST00000508495.5:ENST00000508488.2:ENST00000676117.1:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	142	2	3.41078	3.64724	3.8837	4.39972e-7	5.55421e-8	2.21069e-5	3.37237e-6
chr12	56160042	56160111	12898539	0	+	0.521739	(0.49,0.53]	chr12	1004359	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000552297.5:ENST00000549017.5:ENST00000549566.5:ENST00000547703.5:ENST00000550697.6:ENST00000547649.5:ENST00000536128.5:ENST00000548725.5:ENST00000547408.5:ENST00000551589.5:ENST00000550639.1:ENST00000548400.5:ENST00000549392.5:ENST00000548293.5:ENST00000546845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	150	2	3.58586	3.64723	3.7086	9.76044e-7	1.44418e-8	4.34504e-5	1.06634e-6
chr17	43245864	43245963	16552379	0	-	0.666667	(0.59,1]	chr17	1358303	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.92097	3.6471	4.37323	0.0102634	0.00990413	0.0628742	0.061536
chr1	20661325	20661401	882349	0	-	0.684211	(0.59,1]	chr1	91157	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1:ENST00000477229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.84748	3.647095	4.44671	0.0124539	0.00931497	0.0712518	0.0586162
chr17	41769503	41769590	16543135	0	-	0.689655	(0.59,1]	chr17	1356311	2	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000420370.5:ENST00000424457.5:ENST00000591690.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.84748	3.647095	4.44671	0.0124539	0.00931497	0.0712518	0.0586162
chr3	43366616	43366712	4143544	0	-	0.677083	(0.59,1]	chr3	346401	9	UTR3	UTR3:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.84748	3.647095	4.44671	0.0124539	0.00931497	0.0712518	0.0586162
chr3	127622246	127622341	3723621	0	+	0.6	(0.59,1]	chr3	318305	6	UTR3	UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000265056.12	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.84748	3.647095	4.44671	0.0124539	0.00931497	0.0712518	0.0586162
chr5	61391778	61391871	6610757	0	-	0.591398	(0.59,1]	chr5	510945	13	EXON_PSEUDO	EXON_PSEUDO	RPL3P6	ENSG00000213891.3	ENST00000474162.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	32	2	2.84748	3.647095	4.44671	0.0124539	0.00931497	0.0712518	0.0586162
chr12	57718145	57718237	12904318	0	+	0.543478	(0.53,0.59]	chr12	1005896	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550438.5:ENST00000550202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	2.5209	3.64656	4.77222	6.67251e-4	3.09131e-4	0.00867533	0.00446345
chr1	23558959	23559019	896525	0	-	0.516667	(0.49,0.53]	chr1	93157	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ID3	ENSG00000117318.9	ENST00000374561.6:ENST00000463312.1:ENST00000486541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.35133	3.64655	3.94177	0.0104929	0.00150139	0.063428	0.0152367
chr1	44651344	44651439	173231	0	+	0.526316	(0.49,0.53]	chr1	22214	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000474064.5:ENST00000484745.5:ENST00000480686.5:ENST00000474956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.35133	3.64655	3.94177	0.0104929	0.00150139	0.063428	0.0152367
chr10	99403723	99403798	11657489	0	-	0.493333	(0.49,0.53]	chr10	888031	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000489349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.35133	3.64655	3.94177	0.0104929	0.00150139	0.063428	0.0152367
chr20	50569669	50569768	17816072	0	+	0.494949	(0.49,0.53]	chr20	1507122	8	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.30264	3.64649	4.99034	0.0165402	1.6002e-4	0.087611	0.00286408
chr13	46126705	46126803	14009607	0	-	0.510204	(0.49,0.53]	chr13	1098488	9	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.6129	3.6463099999999997	4.67972	0.0052746	6.94757e-4	0.0389109	0.00876781
chr5	10433881	10433979	5875536	0	+	0.255102	[0,0.29]	chr5	462061	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	3.47088	3.646165	3.82145	0.0015572	7.32756e-6	0.0165415	2.13661e-4
chr15	88901550	88901642	15434303	0	-	0.608696	(0.59,1]	chr15	1220392	1	CDS	CDS:UTR3:EXON_MRNA	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5:ENST00000558029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	258	2	2.88028	3.646115	4.41195	1.33545e-4	1.12386e-8	0.00248469	8.56104e-7
chr10	46030525	46030623	11471189	0	-	0.632653	(0.59,1]	chr10	874898	1	UTR5	UTR5:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585056.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	3.05674	3.64602	4.2353	0.0165254	9.4094e-4	0.0873033	0.0106352
chr16	57252373	57252470	15683875	0	+	0.340206	(0.33,0.36]	chr16	1247542	1	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8:ENST00000562023.5:ENST00000563234.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.56818	3.645915	3.72365	3.19155e-4	3.90735e-5	0.00491578	8.43777e-4
chr1	155291755	155291846	1307549	0	-	0.527473	(0.49,0.53]	chr1	132197	1	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.30147	3.645905	4.99034	0.0033367	1.6002e-4	0.0278556	0.00286408
chr17	59765057	59765132	16296218	0	+	0.44	(0.42,0.455]	chr17	1321818	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	VMP1	ENSG00000062716.13	ENST00000593168.5:ENST00000586245.5:ENST00000585847.5:ENST00000262291.9:ENST00000587945.1:ENST00000589823.6:ENST00000592619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	96	2	3.16223	3.6458	4.12937	4.45084e-4	8.94702e-9	0.00633715	7.05254e-7
chr1	220254052	220254149	720578	0	+	0.412371	(0.39,0.42]	chr1	72608	6	EXON_PSEUDO	EXON_PSEUDO	MORF4L1P1	ENSG00000218283.2	ENST00000404582.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	38	2	2.88836	3.6457750000000004	4.40319	0.0102432	3.72195e-6	0.062872	1.21063e-4
chr12	57530596	57530688	13356841	0	-	0.467391	(0.455,0.49]	chr12	1052762	7	UTR3	UTR3:EXON_MRNA	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.08961	3.6457499999999996	4.20189	0.00445157	0.00397662	0.0340751	0.0322851
chr2	161231163	161231260	2164243	0	+	0.463918	(0.455,0.49]	chr2	199315	3	CDS	CDS:EXON_MRNA:INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000406287.5:ENST00000402568.5:ENST00000392749.7:ENST00000405852.5:ENST00000468831.5:ENST00000437623.1:ENST00000439442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.08961	3.6457499999999996	4.20189	0.00445157	0.00397662	0.0340751	0.0322851
chr20	62389508	62389605	18029757	0	-	0.463918	(0.455,0.49]	chr20	1528834	10	UTR3	UTR3:EXON_MRNA	CABLES2	ENSG00000149679.11	ENST00000279101.9	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.08961	3.6457499999999996	4.20189	0.00445157	0.00397662	0.0340751	0.0322851
chr9	93565915	93566013	10363323	0	+	0.479592	(0.455,0.49]	chr9	780189	15	UTR3	UTR3:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.08961	3.6457499999999996	4.20189	0.00445157	0.00397662	0.0340751	0.0322851
chr9	121341201	121341301	10836421	0	-	0.47	(0.455,0.49]	chr9	820985	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.08961	3.6457499999999996	4.20189	0.00445157	0.00397662	0.0340751	0.0322851
chr6	31861187	31861274	7662796	0	-	0.563218	(0.53,0.59]	chr6	585398	1	CDS	CDS:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	3.21941	3.645685	4.07196	0.00266171	1.26681e-6	0.0240332	4.89488e-5
chr18	31520883	31520964	16808890	0	+	0.345679	(0.33,0.36]	chr18	1386418	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13:ENST00000585206.1:ENST00000683654.1:ENST00000683614.1:ENST00000682087.1:ENST00000682241.1:ENST00000684461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	3.56761	3.64563	3.72365	3.19155e-4	5.36554e-6	0.00491578	1.64061e-4
chr8	30786070	30786152	9782388	0	-	0.365854	(0.36,0.39]	chr8	739785	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	PPP2CB	ENSG00000104695.13	ENST00000523023.1:ENST00000221138.9:ENST00000518564.1:ENST00000518532.1:ENST00000522113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	3.46497	3.64555	3.82613	0.00105709	1.39565e-4	0.0123035	0.0023599
chr15	78545633	78545698	15040559	0	+	0.461538	(0.455,0.49]	chr15	1183222	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5:ENST00000559906.1:ENST00000559154.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	44	2	3.32637	3.645505	3.96464	1.64563e-4	6.27408e-5	0.00269001	0.00135074
chr2	27026638	27026735	1690567	0	+	0.474227	(0.455,0.49]	chr2	165296	4	UTR3	UTR3:EXON_MRNA	MAPRE3	ENSG00000084764.12	ENST00000233121.7:ENST00000405074.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.32637	3.645505	3.96464	1.64563e-4	6.27408e-5	0.00269001	0.00135074
chr19	34396365	34396430	17300523	0	+	0.584615	(0.53,0.59]	chr19	1429880	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1:ENST00000592740.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	210	2	3.03516	3.6452599999999995	4.25536	5.2551e-6	2.70587e-10	1.7704e-4	3.28701e-8
chr20	49088008	49088106	17811781	0	+	0.408163	(0.39,0.42]	chr20	1506558	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	12	137	2	3.26588	3.64523	4.02458	7.17064e-7	5.08635e-9	3.36498e-5	4.31026e-7
chr1	171577569	171577637	537476	0	+	0.5	(0.49,0.53]	chr1	57702	3	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	3.61536	3.64497	3.67458	1.89038e-5	3.77921e-6	5.12059e-4	1.22746e-4
chr1	220001196	220001255	1511006	0	-	0.457627	(0.455,0.49]	chr1	151035	2	CDS	CDS:UTR3:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.78188	3.644965	4.50805	0.00122223	7.46087e-4	0.0135383	0.00892618
chr3	51993748	51993848	4181344	0	-	0.59	(0.53,0.59]	chr3	352459	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5:ENST00000492277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	430	2	3.32963	3.6448099999999997	3.95999	9.44394e-8	1.81281e-11	5.94331e-6	2.96788e-9
chr1	203733721	203733810	669818	0	+	0.460674	(0.455,0.49]	chr1	67510	2	SS5_PROX	SS5_PROX:INTRON	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr10	70885797	70885863	11562589	0	-	0.484848	(0.455,0.49]	chr10	879870	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCBD1	ENSG00000166228.9	ENST00000493961.5:ENST00000299299.4:ENST00000493228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr11	12263284	12263376	11805492	0	+	0.456522	(0.455,0.49]	chr11	904120	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MICAL2	ENSG00000133816.18	ENST00000683283.1:ENST00000256194.8:ENST00000646065.1:ENST00000530691.5:ENST00000525618.5:ENST00000530021.5:ENST00000525444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr11	35221653	35221732	11908761	0	+	0.468354	(0.455,0.49]	chr11	910112	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CD44	ENSG00000026508.20	ENST00000415148.6:ENST00000263398.11:ENST00000428726.8:ENST00000425428.6:ENST00000526669.6:ENST00000433892.6:ENST00000278386.10:ENST00000434472.6:ENST00000352818.8:ENST00000442151.6:ENST00000279452.10:ENST00000639002.1:ENST00000525688.5:ENST00000278385.10:ENST00000525293.5:ENST00000527326.1:ENST00000531141.1:ENST00000525469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr11	125097605	125097705	12641311	0	-	0.48	(0.455,0.49]	chr11	981399	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM218	ENSG00000150433.10	ENST00000682305.1:ENST00000531909.5:ENST00000527257.1:ENST00000528724.5:ENST00000531262.5:ENST00000532156.5:ENST00000532407.5:ENST00000279968.8:ENST00000531851.5:ENST00000526175.5:ENST00000527766.5:ENST00000529609.5:ENST00000529583.5:ENST00000527271.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr11	125893964	125894044	12643353	0	-	0.4875	(0.455,0.49]	chr11	981587	2	CDS	CDS:EXON_MRNA	PUS3	ENSG00000110060.9	ENST00000227474.8:ENST00000530811.5:ENST00000613398.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr11	134250274	134250343	12675691	0	-	0.478261	(0.455,0.49]	chr11	983506	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	THYN1	ENSG00000151500.15	ENST00000392594.7:ENST00000392595.6:ENST00000341541.8:ENST00000352327.5:ENST00000531135.5:ENST00000533975.1:ENST00000533781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr12	111384686	111384769	13091452	0	+	0.481928	(0.455,0.49]	chr12	1021061	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC02356:HSPA8P14	ENSG00000257595.3:ENSG00000257539.2	ENST00000552663.2:ENST00000552265.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr15	65562828	65562884	14980013	0	+	0.464286	(0.455,0.49]	chr15	1177573	2	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr19	323635	323735	17414940	0	-	0.46	(0.455,0.49]	chr19	1451482	96	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr2	68174734	68174802	1869173	0	+	0.455882	(0.455,0.49]	chr2	176647	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PNO1	ENSG00000115946.8	ENST00000263657.7:ENST00000488728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr2	86081600	86081653	2772518	0	-	0.471698	(0.455,0.49]	chr2	246269	1	CDS	CDS:UTR3:EXON_MRNA	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1:ENST00000683266.1:ENST00000684556.1:ENST00000486964.5:ENST00000684177.1:ENST00000424089.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr2	181901765	181901852	2246721	0	+	0.471264	(0.455,0.49]	chr2	204809	1	CDS	CDS:UTR3:EXON_MRNA	ITPRID2	ENSG00000138434.17	ENST00000431877.7:ENST00000320370.11:ENST00000409001.5:ENST00000440623.5:ENST00000454579.5:ENST00000416081.5:ENST00000470654.1:ENST00000491720.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr2	230573166	230573257	3225641	0	-	0.461538	(0.455,0.49]	chr2	283709	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC010149.4:TPM3P8	ENSG00000235419.5:ENSG00000183022.5	ENST00000455357.5:ENST00000414539.1:ENST00000330554.4	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr22	40881769	40881850	18377317	0	+	0.481481	(0.455,0.49]	chr22	1563978	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	XPNPEP3	ENSG00000196236.13	ENST00000428799.1:ENST00000357137.9:ENST00000465258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr6	80374106	80374199	7808525	0	-	0.483871	(0.455,0.49]	chr6	598308	2	EXON_PSEUDO	EXON_PSEUDO	RPL17P25	ENSG00000219547.1	ENST00000404330.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr6	89683230	89683330	7838302	0	-	0.46	(0.455,0.49]	chr6	600536	2	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr9	464408	464502	10154825	0	+	0.457447	(0.455,0.49]	chr9	764633	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DOCK8	ENSG00000107099.17	ENST00000432829.7:ENST00000453981.5:ENST00000469391.5:ENST00000495184.5:ENST00000382329.1:ENST00000683406.1:ENST00000684637.1:ENST00000462618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chrX	115923739	115923838	19187377	0	-	0.474747	(0.455,0.49]	chrX	1631191	42	INTRON	INTRON	DANT2	ENSG00000235244.4	ENST00000664453.1:ENST00000664164.1:ENST00000430756.2	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chrX	133655435	133655535	19240048	0	-	0.49	(0.455,0.49]	chrX	1634401	585	INTRON	INTRON	GPC3	ENSG00000147257.15	ENST00000394299.7:ENST00000370818.8:ENST00000669691.1:ENST00000631057.2:ENST00000666673.1:ENST00000667662.1:ENST00000666017.1:ENST00000406757.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.47671	3.64473	3.81275	0.0368644	0.0138827	0.145024	0.0760883
chr22	19176229	19176244	18431155	0	-	0.466667	(0.455,0.49]	chr22	1570488	1	CDS	CDS:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	44	2	3.17056	3.6445600000000002	4.1185600000000004	4.1243e-4	2.49433e-5	0.00604953	5.8178e-4
chrX	78122834	78122891	18747116	0	+	0.385965	(0.36,0.39]	chrX	1599837	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5:ENST00000474281.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	53	2	2.55738	3.64442	4.73146	0.0013225	3.06966e-7	0.0144203	1.45846e-5
chr1	162526738	162526838	507530	0	+	0.27	[0,0.29]	chr1	54762	43	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	3.34726	3.64431	3.94136	2.80708e-5	7.11071e-6	6.42106e-4	2.28404e-4
chr12	54237263	54237363	13342899	0	-	0.34	(0.33,0.36]	chr12	1049602	59	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	3.46879	3.644115	3.81944	2.47765e-6	1.09933e-6	8.61909e-5	4.77678e-5
chr20	56403627	56403727	17834513	0	+	0.58	(0.53,0.59]	chr20	1507914	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9:ENST00000493039.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	3.46349	3.64378	3.82407	0.0179666	9.2216e-4	0.0918323	0.0104432
chr14	103520121	103520215	14795320	0	-	0.585106	(0.53,0.59]	chr14	1159535	1	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5:ENST00000555039.1:ENST00000555366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	3.35103	3.643755	3.93648	8.06385e-5	2.54119e-5	0.00167444	5.894e-4
chrX	70962963	70963045	18729617	0	+	0.47561	(0.455,0.49]	chrX	1598079	1	EXON_PSEUDO	EXON_PSEUDO	RPS23P8	ENSG00000230629.2	ENST00000429775.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	77	2	3.47126	3.64375	3.81624	1.48205e-4	7.42494e-7	0.00269793	3.09823e-5
chr22	39522602	39522683	18370809	0	+	0.395062	(0.39,0.42]	chr22	1563272	1	UTR3	UTR3:EXON_MRNA	ATF4	ENSG00000128272.17	ENST00000404241.6:ENST00000674920.3:ENST00000337304.2:ENST00000396680.3	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.62271	3.6436900000000003	3.66467	3.60066e-4	2.66379e-5	0.00544157	6.1526e-4
chr11	65132921	65132997	12421699	0	-	0.5	(0.49,0.53]	chr11	963771	1	CDS	CDS:EXON_MRNA	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1:ENST00000525874.1:ENST00000533685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	67	2	3.02891	3.6436400000000004	4.25837	8.23332e-4	2.60666e-7	0.0102121	1.26854e-5
chr20	50124958	50125057	18004580	0	-	0.585859	(0.53,0.59]	chr20	1526012	69	UTR3	UTR3:EXON_MRNA:INTRON	PEDS1-UBE2V1:PEDS1	ENSG00000124208.16:ENSG00000240849.11	ENST00000341698.2:ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6:ENST00000371658.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	3.44509	3.643615	3.84214	8.31409e-5	6.5494e-6	0.00171126	1.94116e-4
chr10	74101022	74101097	11117465	0	+	0.52	(0.49,0.53]	chr10	846263	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	36	2	3.60476	3.64361	3.68246	4.52633e-4	3.06313e-4	0.00642319	0.00442973
chr11	57409934	57410027	12394456	0	-	0.602151	(0.59,1]	chr11	958641	1	CDS	CDS:EXON_MRNA:INTRON	RP11-872D17.8:SLC43A3	ENSG00000254979.5:ENSG00000134802.18	ENST00000534081.5:ENST00000529411.1:ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000525205.5:ENST00000533524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	119	2	2.67664	3.64349	4.61034	6.8436e-4	4.80579e-6	0.00836671	1.65121e-4
chr5	74720427	74720518	6036675	0	+	0.406593	(0.39,0.42]	chr5	473499	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000261416.12:ENST00000504459.5:ENST00000513336.5:ENST00000503312.5:ENST00000513539.1:ENST00000509579.1:ENST00000505859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.88836	3.643445	4.39853	0.0102432	7.64118e-8	0.062872	4.42542e-6
chr17	81512254	81512354	16707888	0	-	0.58	(0.53,0.59]	chr17	1377346	1	CDS_START	CDS_START:CDS:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	391	2	3.32812	3.64344	3.95876	1.34052e-8	1.43489e-10	9.98899e-7	2.07555e-8
chr2	157258278	157258375	2152106	0	+	0.443299	(0.42,0.455]	chr2	198573	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	3.35491	3.643345	3.93178	1.39104e-4	3.1348e-6	0.00235518	1.15746e-4
chr11	45971283	45971367	12379188	0	-	0.464286	(0.455,0.49]	chr11	955651	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PHF21A	ENSG00000135365.16	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000418153.6:ENST00000532883.5:ENST00000525679.1:ENST00000524497.5:ENST00000531959.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	3.26623	3.6433150000000003	4.0204	0.00736097	2.31662e-4	0.0490627	0.00354314
chr15	90087438	90087506	15437604	0	-	0.455882	(0.455,0.49]	chr15	1221167	1	CDS	CDS:UTR3:EXON_MRNA	IDH2	ENSG00000182054.10	ENST00000330062.8:ENST00000560061.1:ENST00000559482.5:ENST00000540499.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	3.26623	3.6433150000000003	4.0204	0.00736097	2.31662e-4	0.0490627	0.00354314
chr3	101599322	101599402	4331346	0	-	0.4875	(0.455,0.49]	chr3	361272	2	EXON_PSEUDO	EXON_PSEUDO	RPL32P7	ENSG00000243396.1	ENST00000477747.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	30	2	3.26623	3.6433150000000003	4.0204	0.00736097	2.31662e-4	0.0490627	0.00354314
chr6	43531478	43531575	7708166	0	-	0.43299	(0.42,0.455]	chr6	591501	1	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	59	2	2.94325	3.64329	4.34333	1.00632e-4	5.37112e-6	0.00181216	1.79904e-4
chr11	61967311	61967325	12406759	0	-	0.428571	(0.42,0.455]	chr11	960809	1	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	110	2	2.9703	3.64324	4.31618	1.58654e-5	1.11861e-8	4.43799e-4	8.52664e-7
chr11	27889535	27889635	12317014	0	-	0.43	(0.42,0.455]	chr11	952778	8	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	56	2	3.62635	3.643065	3.65978	2.72662e-5	2.09396e-5	6.94447e-4	5.04211e-4
chr7	92606110	92606209	8924900	0	-	0.353535	(0.33,0.36]	chr7	681136	13	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	3.19963	3.642965	4.0863	2.93591e-5	9.44296e-7	7.31344e-4	3.80876e-5
chr1	46269182	46269279	178436	0	+	0.402062	(0.39,0.42]	chr1	23112	12	INTRON	INTRON	RAD54L	ENSG00000085999.13	ENST00000442598.5:ENST00000671528.1:ENST00000371975.9:ENST00000655446.1:ENST00000473251.2:ENST00000476687.2:ENST00000664182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.49701	3.642895	4.78878	0.0339607	4.27222e-4	0.141431	0.00577513
chr4	56469652	56469712	4848799	0	+	0.416667	(0.39,0.42]	chr4	399482	1	CDS	CDS:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000504757.2:ENST00000505314.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.49701	3.642895	4.78878	0.0339607	4.27222e-4	0.141431	0.00577513
chr6	34245749	34245846	7124352	0	+	0.56701	(0.53,0.59]	chr6	548262	10	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	67	953	2	3.48566	3.642805	3.79995	1.52991e-10	1.58151e-11	1.97469e-8	2.85757e-9
chr6	34588875	34588975	7674089	0	-	0.51	(0.49,0.53]	chr6	588118	17	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	3.19483	3.6426600000000002	4.09049	6.77168e-5	2.9452e-5	0.0013157	7.32348e-4
chrX	101398473	101398567	19151692	0	-	0.468085	(0.455,0.49]	chrX	1628676	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.3605	3.6425650000000003	3.92463	0.0113417	0.00147278	0.0665375	0.0157578
chr17	61891600	61891689	16627807	0	-	0.348315	(0.33,0.36]	chr17	1366723	2	CDS	CDS:UTR3:EXON_MRNA	INTS2	ENSG00000108506.13	ENST00000251334.7:ENST00000617492.4:ENST00000444766.7:ENST00000646745.1:ENST00000647009.1:ENST00000578805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.51887	3.6425600000000005	4.76625	0.0358636	3.84608e-4	0.147298	0.00531017
chr4	7060172	7060270	5298613	0	-	0.357143	(0.33,0.36]	chr4	426856	14	UTR3	UTR3:EXON_MRNA	GRPEL1	ENSG00000109519.13	ENST00000264954.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.51887	3.6425600000000005	4.76625	0.0358636	3.84608e-4	0.147298	0.00531017
chr7	77793889	77793971	8867590	0	-	0.341463	(0.33,0.36]	chr7	678033	3	UTR3	UTR3:EXON_MRNA	TMEM60	ENSG00000135211.6	ENST00000257663.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.51887	3.6425600000000005	4.76625	0.0358636	3.84608e-4	0.147298	0.00531017
chr12	53676052	53676083	13341081	0	-	0.612903	(0.59,1]	chr12	1049295	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding	11	298	2	3.10121	3.64249	4.18377	2.06772e-5	2.05087e-8	5.5039e-4	1.43706e-6
chr14	100334775	100334874	14788503	0	-	0.414141	(0.39,0.42]	chr14	1158691	11	UTR3	UTR3:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	3.52355	3.64248	3.76141	2.14058e-4	7.29219e-6	0.00359478	2.13219e-4
chr8	23199265	23199356	9756708	0	-	0.56044	(0.53,0.59]	chr8	737628	1	CDS	CDS:EXON_MRNA	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.37399	3.642275	4.91056	0.0126178	1.08461e-7	0.0717599	5.98453e-6
chr16	58161605	58161703	15965641	0	-	0.397959	(0.39,0.42]	chr16	1280935	22	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	86	2	3.20737	3.642225	4.07708	2.01212e-5	8.89649e-8	5.37852e-4	5.05674e-6
chr19	49684753	49684841	17372115	0	+	0.602273	(0.59,1]	chr19	1443530	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRMT1	ENSG00000126457.22	ENST00000529284.5:ENST00000532489.5:ENST00000527382.5:ENST00000534465.6:ENST00000610806.4:ENST00000391851.8:ENST00000534676.5:ENST00000454376.7:ENST00000525616.1:ENST00000524771.5:ENST00000526224.5:ENST00000529650.1:ENST00000530070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	2.08709	3.641785	5.19648	0.00890645	7.35336e-4	0.0565003	0.00921643
chr12	49990174	49990267	13327177	0	-	0.451613	(0.42,0.455]	chr12	1046307	12	UTR3	UTR3:EXON_MRNA:INTRON	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.48259	3.641615	4.80064	0.0031851	3.0479e-4	0.0267166	0.00472028
chr17	37311357	37311457	16525653	0	-	0.38	(0.36,0.39]	chr17	1352370	117	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.58476	3.6415550000000003	3.69835	5.01956e-4	3.2708e-4	0.00653592	0.00502339
chr2	74152822	74152921	2740198	0	-	0.363636	(0.36,0.39]	chr2	243880	4	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.85784	3.6414349999999995	4.42503	0.00191736	0.00133228	0.0183299	0.0144372
chr12	6511180	6511252	12713331	0	+	0.402778	(0.39,0.42]	chr12	986524	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000545732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	3.52139	3.6414	3.76141	2.14058e-4	5.10101e-5	0.00359478	0.00104581
chr3	179624137	179624234	3928917	0	+	0.402062	(0.39,0.42]	chr3	330265	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000480374.1:ENST00000473500.5:ENST00000471112.1:ENST00000476587.1:ENST00000680692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	38	2	2.27868	3.6412950000000004	5.00391	0.00209079	9.12714e-5	0.0196408	0.00182992
chr15	80137914	80138010	15045407	0	+	0.322917	(0.29,0.33]	chr15	1183661	4	UTR3	UTR3:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000559157.5:ENST00000261749.11:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.99526	3.64128	4.2873	2.55279e-4	1.19649e-5	0.00383691	3.513e-4
chr11	5301662	5301754	12241103	0	-	0.576087	(0.53,0.59]	chr11	946134	7	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	3.47419	3.6411249999999997	3.80806	8.75273e-4	1.65022e-4	0.0106963	0.00269147
chr11	66624883	66624983	11991336	0	+	0.59	(0.53,0.59]	chr11	922178	7	CDS	CDS:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	3.47419	3.6411249999999997	3.80806	8.75273e-4	1.65022e-4	0.0106963	0.00269147
chr18	23556326	23556410	17037525	0	-	0.583333	(0.53,0.59]	chr18	1400609	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.47419	3.6411249999999997	3.80806	8.75273e-4	1.65022e-4	0.0106963	0.00269147
chr1	3780600	3780697	837590	0	-	0.463918	(0.455,0.49]	chr1	84120	22	UTR3	UTR3:EXON_MRNA	LRRC47	ENSG00000130764.10	ENST00000378251.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.50904	3.6411100000000003	4.77318	0.0310515	4.7888e-4	0.131262	0.00628636
chr14	81917400	81917497	14440970	0	+	0.484536	(0.455,0.49]	chr14	1127455	13	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-666E17.1:EIF3LP1	ENSG00000259035.2:ENSG00000258501.1	ENST00000554814.1:ENST00000554099.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	20	2	2.50904	3.6411100000000003	4.77318	0.0310515	4.7888e-4	0.131262	0.00628636
chr16	2517711	2517807	15493384	0	+	0.46875	(0.455,0.49]	chr16	1227524	12	EXON_MRNA	EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3:RP11-20I23.2	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1:ENSG00000279520.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1:ENST00000565223.1:ENST00000624099.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	1	20	2	2.50904	3.6411100000000003	4.77318	0.0310515	4.7888e-4	0.131262	0.00628636
chr3	141959673	141959756	4483334	0	-	0.481928	(0.455,0.49]	chr3	372578	1	CDS	CDS:UTR3:EXON_MRNA	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000474279.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.50904	3.6411100000000003	4.77318	0.0310515	4.7888e-4	0.131262	0.00628636
chr4	153603801	153603890	5177203	0	+	0.483146	(0.455,0.49]	chr4	418146	1	CDS	CDS:EXON_MRNA	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000409959.8:ENST00000240487.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.50904	3.6411100000000003	4.77318	0.0310515	4.7888e-4	0.131262	0.00628636
chr4	13336724	13336806	4721273	0	+	0.426829	(0.42,0.455]	chr4	391938	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	69	2	3.09173	3.641015	4.1903	1.40817e-4	4.41719e-7	0.00258348	1.99209e-5
chr1	175014668	175014768	1374928	0	-	0.56	(0.53,0.59]	chr1	140176	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPS14	ENSG00000120333.4	ENST00000498253.1:ENST00000476371.1:ENST00000367677.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	3.1234	3.640725	4.15805	0.00680952	0.00390623	0.0468196	0.0322851
chr12	122093662	122093762	13122639	0	+	0.58	(0.53,0.59]	chr12	1024773	140	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.1234	3.640725	4.15805	0.00680952	0.00390623	0.0468196	0.0322851
chr3	184323878	184323977	3949229	0	+	0.535354	(0.53,0.59]	chr3	332436	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.1234	3.640725	4.15805	0.00680952	0.00390623	0.0468196	0.0322851
chr3	194447020	194447115	4654933	0	-	0.431579	(0.42,0.455]	chr3	384453	2	CDS	CDS:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	3.04003	3.6406799999999997	4.24133	0.00326918	7.68268e-4	0.0282494	0.00916171
chr4	46724311	46724408	5405888	0	-	0.453608	(0.42,0.455]	chr4	432788	6	EXON_PSEUDO	EXON_PSEUDO	RAC1P2	ENSG00000249936.3	ENST00000511164.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	3.04003	3.6406799999999997	4.24133	0.00326918	7.68268e-4	0.0282494	0.00916171
chr11	4092174	4092268	11773995	0	+	0.553191	(0.53,0.59]	chr11	900920	5	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.515	3.6406650000000003	4.76633	0.0292633	6.98999e-4	0.129773	0.00846751
chr14	22767957	22768039	14174743	0	+	0.573171	(0.53,0.59]	chr14	1110313	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000483939.6:ENST00000612549.6:ENST00000473744.5:ENST00000442110.6:ENST00000431881.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000556473.1:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.515	3.6406650000000003	4.76633	0.0292633	6.98999e-4	0.129773	0.00846751
chr16	81704011	81704085	15772024	0	+	0.567568	(0.53,0.59]	chr16	1255577	2	CDS	CDS:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000398040.8:ENST00000561605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.515	3.6406650000000003	4.76633	0.0292633	6.98999e-4	0.129773	0.00846751
chr19	12791771	12791871	17237287	0	+	0.55	(0.53,0.59]	chr19	1420764	1	CDS_START	CDS_START:CDS:EXON_MRNA	JUNB	ENSG00000171223.6	ENST00000302754.6	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.515	3.6406650000000003	4.76633	0.0292633	6.98999e-4	0.129773	0.00846751
chr11	10508065	10508151	12270796	0	-	0.383721	(0.36,0.39]	chr11	948733	3	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	2	40	2	2.63115	3.640625	4.6501	0.0245975	5.80078e-7	0.114841	2.50873e-5
chr11	34449277	34449363	11906103	0	+	0.44186	(0.42,0.455]	chr11	909767	2	CDS	CDS:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.19078	3.6402900000000002	4.0898	0.00698074	0.00310864	0.0473262	0.0274272
chr5	10423734	10423824	5875431	0	+	0.455556	(0.455,0.49]	chr5	462041	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	97	2	3.33811	3.640255	3.9424	2.75808e-5	4.77122e-8	6.9956e-4	2.95928e-6
chr1	58781382	58781481	1055674	0	-	0.30303	(0.29,0.33]	chr1	108284	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	JUN	ENSG00000177606.8	ENST00000678696.1:ENST00000371222.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	2.14085	3.6400949999999996	5.13934	0.0117968	8.37337e-9	0.0686664	6.64842e-7
chr6	36110439	36110538	7132635	0	+	0.393939	(0.39,0.42]	chr6	549275	21	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.85416	3.6399999999999997	4.42584	0.00225069	0.00199429	0.021386	0.0189001
chr19	45710628	45710723	17590162	0	-	0.336842	(0.33,0.36]	chr19	1480468	1	UTR3	UTR3:EXON_MRNA	FBXO46	ENSG00000177051.6	ENST00000317683.4	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.7655	3.63964	4.51378	0.0175892	0.00118147	0.0918323	0.0127276
chr3	179396382	179396481	4605493	0	-	0.353535	(0.33,0.36]	chr3	380149	4	UTR3	UTR3:EXON_MRNA	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.7655	3.63964	4.51378	0.0175892	0.00118147	0.0918323	0.0127276
chr5	168506109	168506199	6369238	0	+	0.355556	(0.33,0.36]	chr5	494731	2	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.7655	3.63964	4.51378	0.0175892	0.00118147	0.0918323	0.0127276
chr4	76115011	76115099	5475179	0	-	0.318182	(0.29,0.33]	chr4	438872	5	UTR3	UTR3:EXON_MRNA	NUP54	ENSG00000138750.15	ENST00000507257.5:ENST00000508604.5:ENST00000264883.8:ENST00000502850.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	3.62683	3.639545	3.65226	6.18968e-4	2.31878e-5	0.00822794	5.49766e-4
chr4	108667450	108667542	5038567	0	+	0.293478	(0.29,0.33]	chr4	409875	3	UTR3	UTR3:EXON_MRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.62683	3.639545	3.65226	6.18968e-4	2.31878e-5	0.00822794	5.49766e-4
chr19	805491	805569	17189519	0	+	0.551282	(0.53,0.59]	chr19	1411032	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1:ENST00000585956.5:ENST00000587136.1:ENST00000585932.5:ENST00000589883.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	5	72	2	2.94928	3.6395	4.32972	9.80612e-5	7.20871e-6	0.00177549	2.30406e-4
chr14	52640901	52641000	14630039	0	-	0.363636	(0.36,0.39]	chr14	1145962	11	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	3.02115	3.6394849999999996	4.25782	1.35198e-5	2.39021e-7	3.8737e-4	1.17849e-5
chr19	10316975	10317070	17459299	0	-	0.389474	(0.36,0.39]	chr19	1460720	9	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	145	2	3.54432	3.639455	3.73459	2.66863e-8	2.4145e-8	1.80502e-6	1.80398e-6
chr10	18677884	18677982	10946944	0	+	0.255102	[0,0.29]	chr10	833591	28	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.82443	3.63931	4.45419	0.0180803	0.00133426	0.0920398	0.0139317
chr10	49975308	49975399	11039663	0	+	0.274725	[0,0.29]	chr10	840865	6	INTRON	INTRON	TIMM23B-AGAP6	ENSG00000178440.8	ENST00000651763.1:ENST00000651208.1:ENST00000429104.1:ENST00000444438.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	14	2	2.82443	3.63931	4.45419	0.0180803	0.00133426	0.0920398	0.0139317
chr12	56271881	56271891	13349835	0	-	0.2	[0,0.29]	chr12	1051001	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.82443	3.63931	4.45419	0.0180803	0.00133426	0.0920398	0.0139317
chr19	48616078	48616149	17602798	0	-	0.633803	(0.59,1]	chr19	1482902	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000549533.1:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	24	535	2	3.00498	3.6392300000000004	4.27348	1.35089e-6	6.67375e-9	5.16241e-5	5.98012e-7
chr1	89714585	89714684	346895	0	+	0.454545	(0.42,0.455]	chr1	34108	20	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.7523	3.63912	4.52594	0.0153283	0.00144145	0.0828908	0.0147046
chr1	205790166	205790264	1462465	0	-	0.44898	(0.42,0.455]	chr1	147533	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.7523	3.63912	4.52594	0.0153283	0.00144145	0.0828908	0.0147046
chr3	194412098	194412198	4654562	0	-	0.44	(0.42,0.455]	chr3	384352	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.7523	3.63912	4.52594	0.0153283	0.00144145	0.0828908	0.0147046
chr16	70079524	70079624	15996140	0	-	0.48	(0.455,0.49]	chr16	1284445	5	EXON_PSEUDO	EXON_PSEUDO	RP11-106J23.1	ENSG00000241183.1	ENST00000472115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	26	2	2.12994	3.63884	5.14774	0.0304832	7.45457e-5	0.130204	0.00142165
chr17	59682710	59682793	16295469	0	+	0.493976	(0.49,0.53]	chr17	1321730	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	7	94	2	2.67649	3.63872	4.60095	2.28191e-4	1.4298e-8	0.00379211	1.0564e-6
chr6	17629440	17629539	7619017	0	-	0.454545	(0.42,0.455]	chr6	580534	9	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.07474	3.6387099999999997	5.20268	0.0338882	3.59669e-5	0.139841	8.71318e-4
chr12	74538306	74538406	12961042	0	+	0.62	(0.59,1]	chr12	1010218	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	3.34171	3.638485	3.93526	0.00234977	1.599e-4	0.0222173	0.00263454
chrX	153693461	153693523	18915617	0	+	0.564516	(0.53,0.59]	chrX	1611186	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1:ENST00000457723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	193	2	3.20239	3.63835	4.07431	7.76003e-7	4.85871e-9	3.57333e-5	4.13544e-7
chr3	49012664	49012762	3459267	0	+	0.571429	(0.53,0.59]	chr3	301931	10	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000489684.2:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.50447	3.638345	4.77222	0.0301162	6.67251e-4	0.130016	0.00867533
chr5	151786620	151786715	6299555	0	+	0.547368	(0.53,0.59]	chr5	491874	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.50447	3.638345	4.77222	0.0301162	6.67251e-4	0.130016	0.00867533
chr22	20888432	20888531	18299825	0	+	0.555556	(0.53,0.59]	chr22	1553630	7	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.11275	3.63829	4.16383	0.00659193	0.00407571	0.0454205	0.032143
chr5	134927541	134927639	6846869	0	-	0.530612	(0.53,0.59]	chr5	523926	10	EXON_PSEUDO	EXON_PSEUDO	MTND4P12	ENSG00000247627.2	ENST00000498999.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	3.11275	3.63829	4.16383	0.00659193	0.00407571	0.0454205	0.032143
chr6	63212453	63212548	7204415	0	+	0.547368	(0.53,0.59]	chr6	556454	7	UTR3	UTR3:EXON_MRNA	FKBP1C	ENSG00000198225.5	ENST00000370659.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.11275	3.63829	4.16383	0.00659193	0.00407571	0.0454205	0.032143
chrX	119471142	119471227	18841533	0	+	0.364706	(0.36,0.39]	chrX	1605570	2	UTR3	UTR3:EXON_MRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9	protein_coding	protein_coding	protein_coding	protein_coding	10	118	2	3.3627	3.638225	3.91375	7.24679e-6	4.16899e-9	2.31544e-4	3.64077e-7
chr1	171670685	171670769	1368493	0	-	0.5	(0.49,0.53]	chr1	139449	3	EXON_PSEUDO	EXON_PSEUDO	PFN1P1	ENSG00000233328.3	ENST00000442087.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	32	2	2.03065	3.6382200000000005	5.24579	0.0189484	4.073e-5	0.0958835	9.64741e-4
chr11	64204292	64204376	11979327	0	+	0.666667	(0.59,1]	chr11	918745	3	UTR3	UTR3:EXON_MRNA	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000538945.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.30623	3.63819	4.97015	0.0170607	0.00140057	0.0896731	0.0144327
chr19	42232495	42232588	17573422	0	-	0.55914	(0.53,0.59]	chr19	1477668	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSK3A	ENSG00000105723.13	ENST00000222330.8:ENST00000398249.8:ENST00000453535.1:ENST00000493059.1:ENST00000679279.1:ENST00000678692.1:ENST00000676724.1:ENST00000677469.1:ENST00000678040.1:ENST00000678524.1:ENST00000677751.1:ENST00000679108.1:ENST00000678751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.504	3.63811	4.77222	0.00279409	6.67251e-4	0.0241702	0.00867533
chr6	109367199	109367297	7886651	0	-	0.295918	(0.29,0.33]	chr6	603688	8	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	90	2	2.55315	3.638095	4.72304	4.08153e-5	3.45263e-9	9.64741e-4	3.09496e-7
chr1	17407632	17407729	874006	0	-	0.319588	(0.29,0.33]	chr1	89600	10	UTR3	UTR3:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	14	116	2	3.31567	3.63809	3.96051	1.94068e-7	7.94305e-9	1.10874e-5	6.35302e-7
chr5	10411468	10411537	5875300	0	+	0.550725	(0.53,0.59]	chr5	462007	3	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	63	2	3.00086	3.6380600000000003	4.27526	2.19267e-4	1.03921e-5	0.00365543	2.85526e-4
chr7	141010568	141010633	9112072	0	-	0.507692	(0.49,0.53]	chr7	695437	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MRPS33	ENSG00000090263.16	ENST00000324787.10:ENST00000393008.7:ENST00000469351.1:ENST00000484502.1:ENST00000496958.5:ENST00000467334.1:ENST00000496641.1:ENST00000485202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	2.48488	3.6378700000000004	4.79086	0.032052	4.20783e-4	0.133433	0.00611538
chr9	33624829	33624922	10236157	0	+	0.451613	(0.42,0.455]	chr9	769679	7	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	47	2	3.52659	3.6375900000000003	3.74859	6.87022e-4	1.15347e-5	0.00876781	3.09736e-4
chr17	7580240	7580327	16105714	0	+	0.563218	(0.53,0.59]	chr17	1296984	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	55	2	2.87264	3.637575	4.40251	0.00168899	4.48447e-6	0.0175515	1.41623e-4
chr2	26193576	26193674	2565664	0	-	0.540816	(0.53,0.59]	chr2	230539	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	69	2	3.62271	3.637455	3.6522	2.78569e-5	2.31822e-5	7.05707e-4	5.49766e-4
chr11	18407757	18407852	11831570	0	+	0.326316	(0.29,0.33]	chr11	906046	5	UTR3	UTR3:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000422447.8:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9	protein_coding	protein_coding	protein_coding	protein_coding	31	331	2	2.80103	3.637435	4.47384	1.55828e-6	1e-12	6.39831e-5	2.25522e-10
chr9	70217573	70217668	10297066	0	+	0.473684	(0.455,0.49]	chr9	775395	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	MAMDC2:RPL24P8	ENSG00000165072.10:ENSG00000236801.1	ENST00000377182.5:ENST00000446071.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	49	2	2.63872	3.637395	4.63607	0.00510378	6.94376e-7	0.0390492	2.92826e-5
chr11	3683199	3683271	12237791	0	-	0.513889	(0.49,0.53]	chr11	945502	1	CDS	CDS:UTR3:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000524563.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.15207	3.63735	4.12263	0.00591451	0.00347189	0.0427941	0.0286293
chr19	10919881	10919966	17228504	0	+	0.505882	(0.49,0.53]	chr19	1419239	1	CDS	CDS:UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586508.1:ENST00000586298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.15207	3.63735	4.12263	0.00591451	0.00347189	0.0427941	0.0286293
chr5	141577474	141577532	6875682	0	-	0.5	(0.49,0.53]	chr5	526465	1	CDS	CDS:UTR3:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5:ENST00000647330.1:ENST00000523100.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.15207	3.63735	4.12263	0.00591451	0.00347189	0.0427941	0.0286293
chr21	45480778	45480858	18145601	0	+	0.75	(0.59,1]	chr21	1539727	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	157	2	3.08707	3.6370899999999997	4.18711	8.79989e-4	2.53036e-7	0.0107294	1.2418e-5
chr1	109275372	109275467	398426	0	+	0.463158	(0.455,0.49]	chr1	38725	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CELSR2	ENSG00000143126.8	ENST00000271332.4:ENST00000498157.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.30139	3.636985	4.97258	0.0530131	1.84876e-4	0.195536	0.00296795
chr12	64737003	64737055	13378970	0	-	0.480769	(0.455,0.49]	chr12	1054225	1	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000540196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.30139	3.636985	4.97258	0.0530131	1.84876e-4	0.195536	0.00296795
chr19	14515158	14515255	17480906	0	-	0.474227	(0.455,0.49]	chr19	1464580	5	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.30139	3.636985	4.97258	0.0530131	1.84876e-4	0.195536	0.00296795
chr12	123261065	123261161	13594887	0	-	0.364583	(0.36,0.39]	chr12	1070943	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK2AP1	ENSG00000111328.7	ENST00000652466.1:ENST00000541002.7:ENST00000544890.1:ENST00000618072.4:ENST00000261692.7:ENST00000535979.5:ENST00000538446.5:ENST00000542174.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.06832	3.63694	5.20556	0.0122123	4.46552e-5	0.0702898	9.34801e-4
chr6	33250555	33250650	7668732	0	-	0.505263	(0.49,0.53]	chr6	587357	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	3.01617	3.636695	4.25722	8.62231e-4	1.00699e-5	0.0100487	3.03291e-4
chr1	32042526	32042624	125856	0	+	0.581633	(0.53,0.59]	chr1	15465	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	53	2	3.34735	3.63654	3.92573	1.46925e-4	8.62301e-5	0.0026854	0.00160749
chr2	15292612	15292689	2527383	0	-	0.493506	(0.49,0.53]	chr2	227345	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.15044	3.6365350000000003	4.12263	0.00591451	4.32676e-4	0.0427941	0.00583708
chr3	184306349	184306422	3949072	0	+	0.506849	(0.49,0.53]	chr3	332338	1	CDS	CDS:EXON_MRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	3.15044	3.6365350000000003	4.12263	0.00591451	4.32676e-4	0.0427941	0.00583708
chr19	43738121	43738217	17580361	0	-	0.489583	(0.455,0.49]	chr19	1479047	1	CDS	CDS:UTR3:EXON_MRNA	SMG9	ENSG00000105771.14	ENST00000270066.11:ENST00000601170.5:ENST00000597598.1:ENST00000595700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	1.96875	3.63633	5.30391	0.0480352	3.12735e-5	0.180552	6.97306e-4
chr3	13328770	13328858	4046319	0	-	0.511364	(0.49,0.53]	chr3	339558	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	3.35841	3.6361350000000003	3.91386	1.37225e-4	3.70757e-7	0.00253405	1.71165e-5
chr5	10286424	10286496	6446958	0	-	0.430556	(0.42,0.455]	chr5	502177	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	43	2	3.23839	3.63611	4.03383	2.92986e-4	4.24324e-5	0.00464297	8.98949e-4
chr1	225412549	225412645	1528171	0	-	0.416667	(0.39,0.42]	chr1	152810	2	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	141	2	3.0778	3.63578	4.19376	1.80065e-6	7.07654e-10	6.55756e-5	8.44627e-8
chr2	128129103	128129179	2059864	0	+	0.486842	(0.455,0.49]	chr2	193230	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	3.06914	3.635515	4.20189	0.00397662	6.6649e-4	0.0322851	0.00820018
chr1	175000024	175000102	559163	0	+	0.75641	(0.59,1]	chr1	58811	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000426793.1:ENST00000461977.1:ENST00000483307.1:ENST00000367679.7:ENST00000473925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.61074	3.63521	4.65968	0.025486	0.00413632	0.117089	0.0324998
chr10	91278612	91278710	11187743	0	+	0.326531	(0.29,0.33]	chr10	850434	4	UTR3	UTR3:EXON_MRNA	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.45373	3.634955	4.81618	0.0156405	2.74489e-4	0.084273700000000007	0.00406677
chr15	34230078	34230156	14860518	0	+	0.307692	(0.29,0.33]	chr15	1167014	4	UTR3	UTR3:EXON_MRNA	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000558205.5:ENST00000561246.1:ENST00000560947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.45373	3.634955	4.81618	0.0156405	2.74489e-4	0.084273700000000007	0.00406677
chr7	151360151	151360251	8618506	0	+	0.42	(0.39,0.42]	chr7	658616	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000468404.5:ENST00000568733.6:ENST00000470229.6:ENST00000470316.5:ENST00000483358.5:ENST00000493588.5:ENST00000480907.5:ENST00000477666.1:ENST00000497987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.3298	3.63488	3.93996	0.00841622	0.00165391	0.054565	0.0163614
chr1	21859620	21859676	891035	0	-	0.642857	(0.59,1]	chr1	92424	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	2.67401	3.63457	4.59513	0.00166951	4.29216e-6	0.0173932	1.3648e-4
chr1	151068276	151068374	469982	0	+	0.397959	(0.39,0.42]	chr1	47855	9	UTR3	UTR3:EXON_MRNA	MLLT11	ENSG00000213190.4	ENST00000368921.5	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	3.23394	3.6344250000000002	4.03491	5.30858e-5	1.51324e-6	0.00108035	6.2379e-5
chr6	30723434	30723530	7112212	0	+	0.614583	(0.59,1]	chr6	545065	2	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	455	2	3.15023	3.6341150000000004	4.118	1.75239e-6	1.10125e-8	6.40991e-5	9.25267e-7
chr4	2929881	2929978	4687503	0	+	0.298969	(0.29,0.33]	chr4	388871	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	3.08169	3.634065	4.18644	0.00114594	1.56826e-5	0.0130468	3.99464e-4
chr10	104262978	104263077	11236809	0	+	0.383838	(0.36,0.39]	chr10	856318	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GSTO1	ENSG00000148834.13	ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	86	2	2.35478	3.634005	4.91323	0.00193274	6.20413e-10	0.0192272	6.84754e-8
chr10	46003318	46003402	11026552	0	+	0.369048	(0.36,0.39]	chr10	839311	1	UTR3	UTR3:EXON_MRNA	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.36872	3.63395	3.89918	1.31092e-4	1.0624e-4	0.00226268	0.00205241
chr12	118150697	118150796	13568742	0	-	0.414141	(0.39,0.42]	chr12	1067878	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000543709.5:ENST00000537305.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	3.32811	3.6339300000000003	3.93975	0.0105893	0.00182819	0.0644466	0.0183913
chr18	36794806	36794906	17079081	0	-	0.4	(0.39,0.42]	chr18	1403215	8	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.32811	3.6339300000000003	3.93975	0.0105893	0.00182819	0.0644466	0.0183913
chr15	74410897	74410985	15374431	0	-	0.613636	(0.59,1]	chr15	1215148	3	CDS	CDS:EXON_MRNA:PRIMIRNA	SEMA7A:MIR6881	ENSG00000138623.10:ENSG00000277391.1	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6:ENST00000616450.1:ENST00000569617.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	32	2	2.9228	3.6338350000000004	4.34487	0.0123678	0.00981698	0.0705839	0.0612992
chr3	47418748	47418843	4160724	0	-	0.694737	(0.59,1]	chr3	348118	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.9228	3.6338350000000004	4.34487	0.0123678	0.00981698	0.0705839	0.0612992
chr16	28098443	28098537	15903492	0	-	0.638298	(0.59,1]	chr16	1273213	6	UTR3	UTR3:EXON_MRNA	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000568065.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.39747	3.63362	4.86977	0.0430221	0.00246014	0.161091	0.0230058
chr15	43409475	43409573	14895831	0	+	0.397959	(0.39,0.42]	chr15	1171084	30	UTR3	UTR3:EXON_MRNA	TUBGCP4	ENSG00000137822.13	ENST00000564079.6	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.2627100000000002	3.6333100000000003	5.00391	0.0192666	9.12714e-5	0.0966228	0.00182992
chr19	17863170	17863263	17255718	0	+	0.612903	(0.59,1]	chr19	1424763	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000597648.5:ENST00000599870.1	protein_coding	protein_coding	protein_coding	protein_coding	17	437	2	3.37245	3.632985	3.89352	9.28959e-7	2.3166e-8	4.15491e-5	1.60393e-6
chr11	32588593	32588607	11898163	0	+	0.357143	(0.33,0.36]	chr11	908896	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.13748	3.63294	4.1284	0.00407303	0.00379835	0.0324137	0.0307587
chr2	31866612	31866709	2588572	0	-	0.340206	(0.33,0.36]	chr2	233052	17	UTR3	UTR3:EXON_MRNA	MEMO1	ENSG00000162959.14	ENST00000295065.9	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.13748	3.63294	4.1284	0.00407303	0.00379835	0.0324137	0.0307587
chr7	138505407	138505507	8562735	0	+	0.36	(0.33,0.36]	chr7	653226	6	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	3.13748	3.63294	4.1284	0.00407303	0.00379835	0.0324137	0.0307587
chr3	156542116	156542215	4538653	0	-	0.393939	(0.39,0.42]	chr3	376076	27	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	9	115	2	2.96922	3.632815	4.29641	3.96604e-5	1.6735e-9	9.4815e-4	1.65727e-7
chr12	104756948	104757042	13062182	0	+	0.62766	(0.59,1]	chr12	1017752	1	CDS	CDS:EXON_MRNA	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5:ENST00000549016.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.5215	3.6326400000000003	4.74378	0.032241	0.00312942	0.135671	0.0264364
chr18	36144938	36145034	16825036	0	+	0.427083	(0.42,0.455]	chr18	1387591	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	2.71736	3.6326400000000003	4.54792	9.66045e-4	3.91972e-4	0.0115185	0.00539186
chr7	75985668	75985758	8342192	0	+	0.7	(0.59,1]	chr7	636200	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000439269.1:ENST00000496888.5:ENST00000493973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.5215	3.6326400000000003	4.74378	0.032241	0.00312942	0.135671	0.0264364
chr14	52640803	52640901	14630038	0	-	0.438776	(0.42,0.455]	chr14	1145962	10	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.04003	3.632635	4.22524	7.68268e-4	1.2079e-5	0.00916171	3.52389e-4
chr12	118416033	118416133	13109366	0	+	0.5	(0.49,0.53]	chr12	1023199	17	UTR3	UTR3:EXON_MRNA	SUDS3	ENSG00000111707.12	ENST00000543473.2	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	1.99044	3.632605	5.27477	0.0435903	4.14521e-5	0.170594	8.8376e-4
chr12	111448692	111448790	13092084	0	+	0.55102	(0.53,0.59]	chr12	1021116	5	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.14205	3.63253	5.12301	0.0123179	1.2852e-4	0.070688	0.00241206
chr22	19048507	19048575	18430153	0	-	0.617647	(0.59,1]	chr22	1570356	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.19052	3.6325250000000002	5.07453	0.0237927	0.00117617	0.109413	0.0132131
chr5	127523479	127523579	6204734	0	+	0.52	(0.49,0.53]	chr5	483416	1	CDS_START	CDS_START:CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512871.1:ENST00000442138.6:ENST00000512635.2:ENST00000507774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	61	2	3.41615	3.632235	3.84832	9.74162e-5	5.8066e-6	0.00193088	1.75335e-4
chr14	67677654	67677749	14683347	0	-	0.4	(0.39,0.42]	chr14	1149624	10	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000553582.5:ENST00000554493.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.11549	3.632175	4.14886	0.00415881	0.00403491	0.0325842	0.032143
chr1	32171391	32171490	127022	0	+	0.262626	[0,0.29]	chr1	15636	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	24	2	3.47088	3.631995	3.79311	0.0015572	1.75012e-4	0.0165415	0.00283967
chr1	42843622	42843720	162257	0	+	0.469388	(0.455,0.49]	chr1	20422	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.75587	3.63196	4.50805	0.00293507	0.00122223	0.025146	0.0135383
chr12	53382392	53382487	12885888	0	+	0.484211	(0.455,0.49]	chr12	1002309	4	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000551969.5:ENST00000426431.2:ENST00000548560.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.75587	3.63196	4.50805	0.00293507	0.00122223	0.025146	0.0135383
chr16	1701400	1701498	15488695	0	+	0.469388	(0.455,0.49]	chr16	1226190	13	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.75587	3.63196	4.50805	0.00293507	0.00122223	0.025146	0.0135383
chr6	106971760	106971834	7876591	0	-	0.459459	(0.455,0.49]	chr6	603141	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CD24	ENSG00000272398.6	ENST00000619133.4:ENST00000606017.2:ENST00000615659.1:ENST00000620405.1:ENST00000619869.1:ENST00000622315.1:ENST00000610952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.75587	3.63196	4.50805	0.00293507	0.00122223	0.025146	0.0135383
chr17	43015187	43015284	16550643	0	-	0.546392	(0.53,0.59]	chr17	1357992	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	51	2	2.2203	3.63164	5.04298	0.0016462	1.91383e-4	0.0163443	0.0032874
chr10	80514018	80514063	11151982	0	+	0.4	(0.39,0.42]	chr10	847916	1	CDS	CDS:EXON_MRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.70591	3.63157	4.55723	0.0185716	0.00117753	0.0932453	0.0127276
chr17	28327987	28328087	16175275	0	+	0.47	(0.455,0.49]	chr17	1304982	13	UTR3	UTR3:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.9967	3.631315	4.26593	0.00650423	0.00372962	0.0454205	0.0302984
chr2	135868693	135868776	2898203	0	-	0.46988	(0.455,0.49]	chr2	258558	2	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.9967	3.631315	4.26593	0.00650423	0.00372962	0.0454205	0.0302984
chr19	49719983	49720081	17607170	0	-	0.561224	(0.53,0.59]	chr19	1484152	6	EXON_PSEUDO	EXON_PSEUDO	CTB-33G10.1	ENSG00000243829.1	ENST00000498085.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	158	2	2.74139	3.63129	4.52119	1.51927e-4	3.13327e-10	0.00276208	3.75521e-8
chr7	12369544	12369640	8683362	0	-	0.510417	(0.49,0.53]	chr7	664007	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.70307	3.6311799999999996	4.55929	0.00363585	0.00116196	0.0298137	0.0130851
chr1	44766825	44766887	174067	0	+	0.564516	(0.53,0.59]	chr1	22402	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000472235.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	3.39416	3.631125	3.86809	0.00126006	1.18973e-4	0.013837	0.00207755
chr7	92606308	92606408	8924902	0	-	0.56	(0.53,0.59]	chr7	681136	15	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.39416	3.631125	3.86809	0.00126006	1.18973e-4	0.013837	0.00207755
chrX	47201275	47201366	18686761	0	+	0.483516	(0.455,0.49]	chrX	1593199	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000335972.11:ENST00000442035.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.06025	3.63107	4.20189	0.00397662	1.55878e-4	0.0322851	0.00259387
chr20	38091567	38091667	17782072	0	+	0.49	(0.455,0.49]	chr20	1502505	18	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000373433.9:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.85172	3.6310649999999995	4.41041	0.010864	0.00218771	0.0643837	0.0202707
chr3	183754285	183754365	3946659	0	+	0.4875	(0.455,0.49]	chr3	331508	3	CDS	CDS:EXON_MRNA	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.85172	3.6310649999999995	4.41041	0.010864	0.00218771	0.0643837	0.0202707
chr8	105801544	105801644	9547370	0	+	0.48	(0.455,0.49]	chr8	724804	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZFPM2	ENSG00000169946.14	ENST00000407775.7:ENST00000520492.5:ENST00000517361.1:ENST00000522296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.85172	3.6310649999999995	4.41041	0.010864	0.00218771	0.0643837	0.0202707
chr18	31538750	31538826	16809082	0	+	0.421053	(0.42,0.455]	chr18	1386462	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.41041	3.630955	3.8515	0.0119089	1.00299e-4	0.0686664	0.00180803
chr4	56502244	56502339	4849151	0	+	0.347368	(0.33,0.36]	chr4	399579	5	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	3.60198	3.6309500000000003	3.65992	6.01238e-4	3.45596e-4	0.00811676	0.00486237
chr4	75799621	75799676	4892998	0	+	0.345455	(0.33,0.36]	chr4	403057	1	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.60198	3.6309500000000003	3.65992	6.01238e-4	3.45596e-4	0.00811676	0.00486237
chr5	138435700	138435794	6244658	0	+	0.542553	(0.53,0.59]	chr5	486607	1	UTR3	UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	1.85636	3.6306649999999996	5.40497	0.0197135	2.83308e-5	0.0983378	7.12614e-4
chr15	22875198	22875271	15158953	0	-	0.520548	(0.49,0.53]	chr15	1192882	1	CDS	CDS:EXON_MRNA	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000617556.4:ENST00000610365.4:ENST00000619348.4:ENST00000561263.2:ENST00000557890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.52637	3.630655	3.73494	0.0189345	6.68602e-4	0.0934721	0.00820018
chr15	77485212	77485310	15037372	0	+	0.5	(0.49,0.53]	chr15	1182624	24	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.52637	3.630655	3.73494	0.0189345	6.68602e-4	0.0934721	0.00820018
chr20	45333022	45333069	17984998	0	-	0.510638	(0.49,0.53]	chr20	1523779	1	CDS	CDS:EXON_MRNA	SDC4	ENSG00000124145.6	ENST00000372733.3	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.52637	3.630655	3.73494	0.0189345	6.68602e-4	0.0934721	0.00820018
chr5	66054467	66054564	6005852	0	+	0.494845	(0.49,0.53]	chr5	470498	12	CDS	CDS:EXON_MRNA:INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.52637	3.630655	3.73494	0.0189345	6.68602e-4	0.0934721	0.00820018
chr19	10293163	10293246	17224721	0	+	0.614458	(0.59,1]	chr19	1418548	3	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	3.41536	3.630465	3.84557	0.0410704	0.00164655	0.163285	0.0163443
chr12	49185921	49185990	13324026	0	-	0.608696	(0.59,1]	chr12	1045768	1	CDS	CDS:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	173	2	3.15001	3.63021	4.11041	2.43576e-5	3.80718e-6	5.7125e-4	1.35011e-4
chr1	226361074	226361170	1533011	0	-	0.416667	(0.39,0.42]	chr1	153416	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	3.16612	3.6301550000000002	4.09419	4.03393e-4	2.95839e-5	0.00550292	7.34143e-4
chr7	65964322	65964390	8834409	0	-	0.397059	(0.39,0.42]	chr7	674566	1	CDS	CDS:UTR3:EXON_MRNA	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000461622.1:ENST00000462371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.18155	3.6300350000000003	5.07852	0.0283931	1.02164e-4	0.127654	0.00183311
chr3	53229357	53229436	4189028	0	-	0.64557	(0.59,1]	chr3	353789	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1:ENST00000460243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	3.28861	3.629895	3.97118	0.0028753	1.3379e-4	0.0256141	0.00229039
chr2	157766012	157766104	2952313	0	-	0.434783	(0.42,0.455]	chr2	262121	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACVR1	ENSG00000115170.16	ENST00000682025.1:ENST00000683487.1:ENST00000682300.1:ENST00000263640.7:ENST00000683441.1:ENST00000684595.1:ENST00000682690.1:ENST00000434821.7:ENST00000683404.1:ENST00000683426.1:ENST00000684104.1:ENST00000409283.6:ENST00000684348.1:ENST00000683820.1:ENST00000672582.1:ENST00000673324.1:ENST00000424669.6:ENST00000539637.6:ENST00000410057.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.05889	3.62969	4.20049	0.00524205	1.49765e-5	0.0399155	3.83096e-4
chr5	151800258	151800346	6299721	0	+	0.431818	(0.42,0.455]	chr5	491939	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1:ENST00000677241.1:ENST00000677608.1:ENST00000676507.1:ENST00000678612.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	3.05889	3.62969	4.20049	0.00524205	1.49765e-5	0.0399155	3.83096e-4
chr17	49404897	49404991	16581147	0	-	0.638298	(0.59,1]	chr17	1362358	10	UTR3	UTR3:EXON_MRNA	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.46484	3.62967	4.7945	0.00383661	0.0031766	0.0310411	0.0279054
chrX	119581506	119581580	18841612	0	+	0.297297	(0.29,0.33]	chrX	1605589	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	UBE2A	ENSG00000077721.16	ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000629303.2:ENST00000628549.1:ENST00000371569.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	3.26422	3.629375	3.99453	2.56761e-4	8.03892e-5	0.00385453	0.00167226
chr4	185160153	185160251	5832036	0	-	0.316327	(0.29,0.33]	chr4	458275	6	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	3.26422	3.629195	3.99417	2.56761e-4	3.53734e-6	0.00385453	1.27543e-4
chr4	24527743	24527833	5358697	0	-	0.244444	[0,0.29]	chr4	429813	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5:ENST00000336812.5:ENST00000508032.5:ENST00000512903.1:ENST00000513036.5:ENST00000508368.1:ENST00000504279.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	3.16727	3.629105	4.09094	4.54416e-4	2.22824e-6	0.00608573	8.65895e-5
chr2	175927472	175927571	3028112	0	-	0.454545	(0.42,0.455]	chr2	268146	37	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.05515	3.628915	5.20268	0.017518	3.59669e-5	0.0924156	8.71318e-4
chr17	59677031	59677109	16295406	0	+	0.410256	(0.39,0.42]	chr17	1321703	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	131	2	3.01443	3.628905	4.24338	2.8712e-5	5.84812e-10	7.20639e-4	6.49985e-8
chr22	21670996	21671059	18303492	0	+	0.52381	(0.49,0.53]	chr22	1554295	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	3.57669	3.628785	3.68088	3.59064e-5	1.82756e-5	8.71318e-4	4.52458e-4
chr5	138827514	138827582	6247003	0	+	0.544118	(0.53,0.59]	chr5	486750	1	CDS	CDS:UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000522730.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.43342	3.628745	3.82407	0.0179666	8.93729e-5	0.0918323	0.00165837
chr12	100339758	100339856	13039821	0	+	0.285714	[0,0.29]	chr12	1015444	7	UTR3	UTR3:EXON_MRNA	SCYL2	ENSG00000136021.19	ENST00000360820.7:ENST00000635101.1	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.65703	3.62831	4.59959	0.00320067	7.13769e-4	0.0280721	0.0085671400000000009
chr5	132756000	132756096	6836937	0	-	0.239583	[0,0.29]	chr5	523097	1	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.40395	3.62831	4.85267	0.0210081	2.14908e-4	0.101116	0.00332687
chr17	61785521	61785621	16626726	0	-	0.27	[0,0.29]	chr17	1366582	7	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.89477	3.6283000000000003	4.36183	0.00179424	0.00170062	0.01759	0.0174091
chr13	99541558	99541612	13865435	0	+	0.37037	(0.36,0.39]	chr13	1087188	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000466555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	3.58637	3.628075	3.66978	5.84377e-4	3.25031e-4	0.00793559	0.00463603
chr12	53383527	53383622	12885900	0	+	0.536842	(0.53,0.59]	chr12	1002309	16	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.29789	3.62807	4.95825	0.00674768	2.87508e-4	0.0468196	0.00457439
chr5	179723663	179723681	6414404	0	+	0.611111	(0.59,1]	chr5	499192	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	106	2	2.57134	3.627875	4.68441	0.00259175	2.49298e-6	0.0237245	8.66637e-5
chr6	16295458	16295549	7067852	0	+	0.252747	[0,0.29]	chr6	540929	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000544145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.80134	3.627765	4.45419	0.0049344	0.00133426	0.0379087	0.0139317
chr7	135591449	135591524	8552738	0	+	0.373333	(0.36,0.39]	chr7	652735	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.0992	3.62765	4.1561	5.86576e-4	2.14257e-5	0.00742331	5.67278e-4
chr1	11954829	11954893	45285	0	+	0.5625	(0.53,0.59]	chr1	5737	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000196061.5:ENST00000429000.6:ENST00000465920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	150	2	2.34398	3.627615	4.91125	0.00143671	5.71172e-11	0.0154399	8.27196e-9
chr12	54235766	54235866	13342884	0	-	0.38	(0.36,0.39]	chr12	1049602	44	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	3.51192	3.627535	3.74315	1.03824e-5	1.37919e-6	3.10912e-4	5.23299e-5
chr5	140647255	140647308	6871664	0	-	0.622642	(0.59,1]	chr5	526121	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFA2	ENSG00000131495.9	ENST00000510680.1:ENST00000252102.9:ENST00000512088.1:ENST00000502960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	68	2	3.11647	3.62749	4.13851	0.00535979	5.66622e-5	0.0406564	0.00114182
chr1	154156762	154156859	1302306	0	-	0.402062	(0.39,0.42]	chr1	131065	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	3.05461	3.6274499999999996	4.20029	8.55091e-4	1.46608e-5	0.0105173	3.77398e-4
chr11	65130250	65130314	12421663	0	-	0.65625	(0.59,1]	chr11	963744	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	SYVN1:MIR6751	ENSG00000162298.19:ENSG00000284489.1	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000527765.1:ENST00000610479.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	2	69	2	3.0542	3.62728	4.20036	0.00663549	4.07557e-5	0.0456243	8.75066e-4
chr16	1964769	1964841	15823844	0	-	0.569444	(0.53,0.59]	chr16	1261875	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000529806.5:ENST00000527302.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	159	2484	2	3.14828	3.6271700000000004	4.10606	1.66952e-9	1e-12	1.78463e-7	2.25522e-10
chr2	135715621	135715694	2082862	0	+	0.506849	(0.49,0.53]	chr2	195378	2	CDS	CDS:EXON_MRNA:INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000445855.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.13501	3.6268450000000003	5.11868	0.0287874	9.66505e-5	0.128869	0.00175267
chr17	81846515	81846572	16709524	0	-	0.631579	(0.59,1]	chr17	1377687	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000478034.5:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	232	2	1.90312	3.62683	5.35054	0.00874827	4.59297e-10	0.0560016	5.26241e-8
chrX	47211035	47211130	18686881	0	+	0.6	(0.59,1]	chrX	1593255	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	3.39292	3.62676	3.8606	0.00192565	2.2997e-4	0.0191769	0.00352524
chr1	1035276	1035324	2200	0	+	0.604167	(0.59,1]	chr1	469	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.01792	3.62661	4.2353	0.0165254	0.00111911	0.0873033	0.0121894
chr3	22382535	22382633	3353712	0	+	0.295918	(0.29,0.33]	chr3	294010	7	EXON_LNCRNA	EXON_LNCRNA	HMGB1P5	ENSG00000132967.9	ENST00000451497.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	7	60	2	3.01108	3.6265850000000004	4.24209	2.70434e-5	4.66515e-7	6.22729e-4	2.32449e-5
chr6	63581051	63581149	7205084	0	+	0.255102	[0,0.29]	chr6	556541	10	UTR3	UTR3:EXON_MRNA	PTP4A1:RP5-1148A21.4	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	2.28853	3.6264200000000004	4.96431	0.00443139	1.20737e-4	0.0344729	0.00210079
chr3	161227246	161227343	3857681	0	+	0.412371	(0.39,0.42]	chr3	327599	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1:ENST00000478160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	2.61392	3.6263749999999995	4.63883	0.0017565	5.68159e-4	0.0171455	0.0077844
chr16	67228542	67228631	15708873	0	+	0.595506	(0.59,1]	chr16	1249921	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM208	ENSG00000168701.19	ENST00000567193.5:ENST00000563168.1:ENST00000563953.5:ENST00000304800.14:ENST00000561586.5:ENST00000562235.5:ENST00000565201.1:ENST00000564087.2:ENST00000563426.5:ENST00000563271.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	33	2	2.9891200000000002	3.6263300000000003	4.26354	0.0134233	0.00823979	0.0743429	0.0540283
chr19	19121092	19121166	17502068	0	-	0.662162	(0.59,1]	chr19	1468655	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	136	2	3.43088	3.62623	3.82158	3.20583e-5	2.09567e-5	7.1108e-4	5.57049e-4
chr16	58163465	58163563	15965660	0	-	0.397959	(0.39,0.42]	chr16	1280935	41	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	3.00397	3.62602	4.24807	8.22558e-5	2.68001e-7	0.0017048	1.29826e-5
chr20	49153933	49154033	17999806	0	-	0.44	(0.42,0.455]	chr20	1525621	1	CDS_START	CDS_START:CDS:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2:ENST00000456866.2	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.96397	3.6258999999999997	5.28783	0.0138503	2.17539e-5	0.0759947	5.73422e-4
chr1	23787661	23787756	98990	0	+	0.336842	(0.33,0.36]	chr1	11526	4	UTR3	UTR3:EXON_MRNA	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000374524.1	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	2.88053	3.6257099999999998	4.37089	6.44665e-5	5.4707e-6	0.00126362	1.82072e-4
chr6	26281193	26281291	7647335	0	-	0.336735	(0.33,0.36]	chr6	582588	4	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	44	2	3.56818	3.625465	3.68275	3.90735e-5	2.69528e-5	8.43777e-4	6.88144e-4
chr10	74095655	74095755	11117409	0	+	0.58	(0.53,0.59]	chr10	846251	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	2.58886	3.625395	4.66193	7.82255e-4	7.20737e-7	0.00975183	3.019e-5
chr15	57232783	57232856	14949583	0	+	0.520548	(0.49,0.53]	chr15	1174878	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.9035	3.6252	5.3469	0.0295204	2.75121e-5	0.129773	6.30607e-4
chr17	28554033	28554126	16485696	0	-	0.430108	(0.42,0.455]	chr17	1347682	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	3.25872	3.625185	3.99165	4.85053e-5	1.91751e-7	0.00110436	9.81202e-6
chr17	44012166	44012236	16555923	0	-	0.614286	(0.59,1]	chr17	1358815	3	CDS	CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.17616	3.625025	4.07389	0.00434232	7.9402e-5	0.0339139	0.00150391
chr1	183550750	183550835	597998	0	+	0.505882	(0.49,0.53]	chr1	62126	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	3.52514	3.62487	3.7246	4.98361e-5	1.36405e-5	0.0011306	3.54667e-4
chr17	63589072	63589172	16317544	0	+	0.52	(0.49,0.53]	chr17	1323670	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	3.2189	3.62462	4.03034	4.26396e-5	1.59529e-5	9.97006e-4	4.05661e-4
chr5	163439256	163439356	6343375	0	+	0.47	(0.455,0.49]	chr5	493985	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5:ENST00000511683.6:ENST00000512532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	3.09445	3.62461	4.15477	6.1765e-4	5.75142e-7	0.00822794	2.49635e-5
chr11	47580909	47580984	11940509	0	+	0.493333	(0.49,0.53]	chr11	913281	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000528192.5:ENST00000534208.5:ENST00000263774.9:ENST00000534716.2:ENST00000524568.1:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	62	2	2.92152	3.624605	4.32769	1.16526e-4	6.54988e-6	0.00222174	1.94116e-4
chr3	43576786	43576881	4145656	0	-	0.484211	(0.455,0.49]	chr3	346463	2	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	3.02161	3.624565	4.22752	2.07727e-4	1.24055e-5	0.00351752	3.28918e-4
chr1	151053032	151053130	1291635	0	-	0.5	(0.49,0.53]	chr1	128778	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5:ENST00000492796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.8671	3.62451	4.38192	0.0100489	0.00259709	0.0623334	0.0229695
chr18	35140369	35140465	16822717	0	+	0.520833	(0.49,0.53]	chr18	1387343	1	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1:ENST00000588085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.8671	3.62451	4.38192	0.0100489	0.00259709	0.0623334	0.0229695
chr19	45470533	45470628	17353689	0	+	0.526316	(0.49,0.53]	chr19	1439888	8	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FOSB	ENSG00000125740.14	ENST00000585836.5:ENST00000417353.6:ENST00000591858.5:ENST00000443841.6:ENST00000615753.4:ENST00000353609.8:ENST00000590335.1:ENST00000592436.5:ENST00000592811.5:ENST00000586113.1:ENST00000586615.5:ENST00000589593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.8671	3.62451	4.38192	0.0100489	0.00259709	0.0623334	0.0229695
chr22	26560806	26560900	18327468	0	+	0.510638	(0.49,0.53]	chr22	1557407	4	EXON_PSEUDO	EXON_PSEUDO	HMGB1P10	ENSG00000213707.2	ENST00000395823.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	2.8671	3.62451	4.38192	0.0100489	0.00259709	0.0623334	0.0229695
chr15	78549043	78549142	15040597	0	+	0.373737	(0.36,0.39]	chr15	1183235	2	UTR3	UTR3:EXON_MRNA	PSMA4	ENSG00000041357.16	ENST00000559082.5:ENST00000413382.6:ENST00000044462.12:ENST00000560099.5:ENST00000558341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.82476	3.624395	4.42403	8.21459e-4	3.10878e-6	0.0102028	1.04078e-4
chr18	31830461	31830559	17060764	0	-	0.336735	(0.33,0.36]	chr18	1402106	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	48	2	3.60198	3.624375	3.64677	6.01238e-4	2.94381e-6	0.00811676	9.91257e-5
chr17	1661905	1661987	16401398	0	-	0.560976	(0.53,0.59]	chr17	1334892	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.61377	3.624255	5.63474	0.0436338	7.53339e-6	0.170594	2.17987e-4
chr19	35267108	35267197	17304108	0	+	0.674157	(0.59,1]	chr19	1430698	1	CDS	CDS:EXON_MRNA	LSR	ENSG00000105699.17	ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000597446.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	87	2	3.54043	3.624245	3.70806	5.14321e-4	8.66186e-5	0.00719062	0.00161378
chr8	11850865	11850876	9699278	0	-	0.727273	(0.59,1]	chr8	734839	1	CDS	CDS:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000525315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.1314	3.62406	4.11672	0.0222273	6.69043e-4	0.105595	0.00820018
chr6	127119389	127119489	7388731	0	+	0.67	(0.59,1]	chr6	566411	1	SS5_PROX	SS5_PROX:INTRON	RSPO3	ENSG00000146374.14	ENST00000356698.9:ENST00000368317.3	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.84944	3.623755	4.39807	0.0128238	1.36238e-5	0.0719798	3.54656e-4
chr2	20278482	20278582	2540933	0	-	0.22	[0,0.29]	chr2	228537	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	3.46533	3.623725	3.78212	3.32518e-4	8.04462e-5	0.00506816	0.00152269
chr2	3580804	3580882	1616691	0	+	0.358974	(0.33,0.36]	chr2	160406	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000462576.5:ENST00000403564.5:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1:ENST00000472966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	3.52547	3.623645	3.72182	7.60232e-5	1.63969e-6	0.00159574	6.05996e-5
chrX	19358969	19359024	18604948	0	+	0.472727	(0.455,0.49]	chrX	1589054	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000481733.1:ENST00000379804.1:ENST00000478795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	3.12843	3.623495	4.1185600000000004	0.00392855	2.49433e-5	0.0322851	5.8178e-4
chr5	137753048	137753148	6858090	0	-	0.53	(0.49,0.53]	chr5	524499	75	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.87268	3.623455	4.37423	0.00175078	4.77238e-6	0.0180053	1.49327e-4
chr7	140454021	140454120	9107990	0	-	0.484848	(0.455,0.49]	chr7	695057	11	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.27152	3.623385	4.97525	0.00786769	1.38474e-4	0.0514287	0.00254294
chr7	75981570	75981606	8342137	0	+	0.611111	(0.59,1]	chr7	636169	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.42324	3.623245	4.82325	0.0116918	0.002381	0.0686664	0.0216895
chr8	128070159	128070257	9615515	0	+	0.540816	(0.53,0.59]	chr8	728709	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	9	100	2	2.07524	3.62315	5.17106	0.00168938	1.2921e-8	0.0175529	9.66948e-7
chr7	100620679	100620767	8952158	0	-	0.534091	(0.53,0.59]	chr7	684150	4	UTR3	UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	84	2	2.14828	3.623	5.09772	0.00373986	2.38604e-8	0.0312988	1.64029e-6
chr22	21760851	21760951	18442359	0	-	0.35	(0.33,0.36]	chr22	1572508	13	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	3.25766	3.6229050000000003	3.98815	1.92518e-5	1.81315e-7	5.18662e-4	9.3576e-6
chr11	819645	819718	11758956	0	+	0.835616	(0.59,1]	chr11	898500	2	UTR5	UTR5:EXON_MRNA	PNPLA2	ENSG00000177666.17	ENST00000336615.9	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	1.90752	3.62276	5.338	0.0282297	3.196e-4	0.127287	0.00457916
chr22	39019369	39019467	18368457	0	+	0.397959	(0.39,0.42]	chr22	1562849	11	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.8904	3.6227400000000003	4.35508	1.70949e-4	5.2004e-6	0.00301144	1.59965e-4
chrX	72273800	72273886	19107971	0	-	0.44186	(0.42,0.455]	chrX	1625639	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS4X	ENSG00000198034.11	ENST00000316084.10:ENST00000486733.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	356	2	3.59222	3.6227	3.65318	2.41616e-9	1.43245e-10	2.46662e-7	1.86337e-8
chr1	219997252	219997342	1510966	0	-	0.388889	(0.36,0.39]	chr1	151029	4	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	3.60784	3.622655	3.63747	3.79774e-5	3.12796e-6	9.11358e-4	1.0463e-4
chrX	119876513	119876534	18841997	0	+	0.333333	(0.33,0.36]	chrX	1605635	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.51887	3.622425	4.72598	0.0358636	3.063e-7	0.147298	1.45748e-5
chr11	61311783	61311839	12404013	0	-	0.642857	(0.59,1]	chr11	960208	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	3.1277	3.62221	4.11672	0.0222273	0.00490589	0.105595	0.0366648
chr1	47216387	47216485	985513	0	-	0.510204	(0.49,0.53]	chr1	104046	2	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	3.11892	3.62191	4.1249	0.00398244	2.4461e-5	0.0322851	5.72214e-4
chr6	27146517	27146607	7648721	0	-	0.6	(0.59,1]	chr6	582722	1	CDS	CDS:EXON_MRNA	H2BC12	ENSG00000197903.8	ENST00000356950.2	protein_coding	protein_coding	protein_coding	protein_coding	30	762	2	3.42544	3.62183	3.81822	9.67075e-8	7.44963e-9	5.42785e-6	6.60172e-7
chr1	10399063	10399117	39690	0	+	0.722222	(0.59,1]	chr1	4767	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000487775.1:ENST00000270776.13:ENST00000477958.5:ENST00000483936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	135	2	2.18066	3.62181	5.06296	0.00401624	2.18275e-7	0.0324137	1.09179e-5
chr16	85674619	85674718	15798099	0	+	0.434343	(0.42,0.455]	chr16	1257094	22	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.19674	3.62177	5.0468	0.0254904	1.33918e-4	0.117089	0.00229039
chr17	28723881	28723976	16177305	0	+	0.4	(0.39,0.42]	chr17	1305508	1	UTR3	UTR3:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000580755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	122	2	3.09051	3.621705	4.1529	3.22824e-6	6.67335e-9	1.18338e-4	5.4538e-7
chr4	128271315	128271413	5639358	0	-	0.346939	(0.33,0.36]	chr4	449281	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	103	2	3.13916	3.6215450000000002	4.10393	4.50423e-5	1.97302e-9	0.0010411	1.91581e-7
chr9	33441435	33441527	10632541	0	-	0.554348	(0.53,0.59]	chr9	803588	4	UTR3	UTR3:EXON_MRNA	AQP3	ENSG00000165272.16	ENST00000493581.1:ENST00000297991.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.90953	3.6215200000000003	5.33351	0.0517711	4.35359e-5	0.193577	0.00091744700000000005
chr11	47778733	47778826	12389331	0	-	0.408602	(0.39,0.42]	chr11	957386	8	UTR3	UTR3:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	1.99911	3.6214	5.24369	0.0477207	4.15285e-5	0.17993	8.8376e-4
chr17	78202550	78202603	16367895	0	+	0.54717	(0.53,0.59]	chr17	1329592	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AFMID	ENSG00000183077.15	ENST00000409257.9:ENST00000591256.5:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000586542.5:ENST00000591538.1:ENST00000587750.5:ENST00000589664.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	1.78041	3.621025	5.46164	0.0407112	2.11519e-5	0.163285	5.06522e-4
chr6	31784654	31784714	7662466	0	-	0.516667	(0.49,0.53]	chr6	585306	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.23006	3.620885	4.01171	0.00253719	4.88513e-5	0.0233955	0.00100497
chr14	46651636	46651736	14603891	0	-	0.55	(0.53,0.59]	chr14	1143803	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL10L	ENSG00000165496.5	ENST00000298283.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	3.07752	3.620675	4.16383	0.00659193	1.40512e-4	0.0454205	0.00237235
chr5	140529131	140529226	6255127	0	+	0.473684	(0.455,0.49]	chr5	487634	11	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	1.79605	3.620435	5.44482	0.0427708	1.36044e-5	0.168094	3.54469e-4
chr22	24557674	24557774	18314103	0	+	0.51	(0.49,0.53]	chr22	1556250	1	CDS_START	CDS_START:CDS:EXON_MRNA	SNRPD3:KB-1995A5.6	ENSG00000100028.12:ENSG00000286070.2	ENST00000468770.1:ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	3.27328	3.620425	3.96757	2.21441e-4	6.21316e-5	0.00341572	0.00134149
chr1	44747383	44747434	173847	0	+	0.372549	(0.36,0.39]	chr1	22317	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	3.54224	3.620295	3.69835	3.2708e-4	4.51643e-5	0.00502339	9.43703e-4
chr1	219927980	219928070	1510350	0	-	0.688889	(0.59,1]	chr1	150945	3	CDS	CDS:EXON_MRNA:INTRON	SLC30A10	ENSG00000196660.11	ENST00000484239.5:ENST00000366926.4:ENST00000356609.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.44587	3.620185	4.7945	0.0105307	0.0031766	0.0644466	0.0279054
chr1	173486254	173486327	548603	0	+	0.465753	(0.455,0.49]	chr1	58297	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	139	2	3.42025	3.619905	3.81956	1.09503e-6	1.17335e-8	4.76208e-5	8.87793e-7
chr3	49101619	49101705	4172479	0	-	0.511628	(0.49,0.53]	chr3	350378	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000636018.1:ENST00000637543.1:ENST00000494838.6:ENST00000470225.6:ENST00000635443.1:ENST00000494767.2:ENST00000635541.1:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5:ENST00000482261.7:ENST00000635375.1:ENST00000634527.1:ENST00000634802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	80	2	2.68653	3.6198949999999996	4.55326	0.00122977	2.17704e-8	0.013593	1.51603e-6
chr15	60347430	60347529	15316692	0	-	0.474747	(0.455,0.49]	chr15	1208909	4	UTR3	UTR3:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	88	2	2.60884	3.619675	4.63051	4.19997e-5	6.5205e-7	8.92247e-4	3.08344e-5
chr8	47834195	47834262	9816105	0	-	0.522388	(0.49,0.53]	chr8	742609	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.16986	3.61964	4.06942	3.95698e-4	3.44689e-5	0.00587341	7.57659e-4
chr2	96861090	96861181	2792232	0	-	0.725275	(0.59,1]	chr2	249223	5	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	88	2	2.81459	3.619405	4.42422	0.00278977	1.17291e-5	0.0249234	3.12994e-4
chr20	45421382	45421478	17801671	0	+	0.645833	(0.59,1]	chr20	1505112	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000638927.1:ENST00000639239.1:ENST00000638641.1:ENST00000638277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	88	2	2.81459	3.619405	4.42422	0.00278977	1.17291e-5	0.0249234	3.12994e-4
chr11	125614144	125614203	12194476	0	+	0.372881	(0.36,0.39]	chr11	940784	2	CDS	CDS:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	150	2	2.6395	3.6193	4.5991	1.13187e-4	1.17444e-11	0.00216261	1.99776e-9
chr14	98973131	98973216	14784437	0	-	0.470588	(0.455,0.49]	chr14	1158427	4	EXON_PSEUDO	EXON_PSEUDO	RPL3P4	ENSG00000232573.1	ENST00000417615.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	74	2	3.24286	3.6192849999999996	3.99571	2.77105e-4	1.8164e-7	0.00444204	9.36885e-6
chr5	86620673	86620769	6073061	0	+	0.385417	(0.36,0.39]	chr5	476394	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	COX7C:SNORD138	ENSG00000127184.13:ENSG00000284078.1	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1:ENST00000510447.1:ENST00000637229.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	19	212	2	3.39738	3.619255	3.84113	2.4275e-7	1.25816e-10	1.34564e-5	1.66269e-8
chr6	32121262	32121348	7664466	0	-	0.55814	(0.53,0.59]	chr6	586018	1	CDS	CDS:EXON_MRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000485314.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.36991	3.61907	4.86823	0.00501452	4.35895e-4	0.0370872	0.00623608
chr6	27139520	27139620	7104159	0	+	0.66	(0.59,1]	chr6	543289	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C9	ENSG00000276180.1	ENST00000615353.1	protein_coding	protein_coding	protein_coding	protein_coding	6	131	2	2.37086	3.61899	4.86712	0.00173935	7.89754e-7	0.0179345	3.26923e-5
chr3	161246391	161246448	3857881	0	+	0.438596	(0.42,0.455]	chr3	327644	2	CDS	CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.43733	3.618985	4.80064	0.0103896	3.0479e-4	0.0640167	0.00472028
chr6	63212073	63212168	7204411	0	+	0.347368	(0.33,0.36]	chr6	556454	3	UTR3	UTR3:EXON_MRNA	FKBP1C	ENSG00000198225.5	ENST00000370659.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.47163	3.6189400000000003	4.76625	0.0129725	3.84608e-4	0.0724783	0.00531017
chr9	35057471	35057530	10638066	0	-	0.491525	(0.49,0.53]	chr9	804502	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000681537.1:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2:ENST00000466100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	3.16986	3.618865	4.06787	3.95698e-4	1.16062e-6	0.00587341	4.53337e-5
chr3	98581458	98581511	4319554	0	-	0.415094	(0.39,0.42]	chr3	360259	2	CDS	CDS:EXON_MRNA	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2:ENST00000510489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	3.57294	3.618805	3.66467	3.60066e-4	3.67751e-5	0.00544157	8.00584e-4
chr1	23073338	23073403	97682	0	+	0.446154	(0.42,0.455]	chr1	11281	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.7523	3.61876	4.48522	0.0153283	2.15617e-6	0.0828908	7.62296e-5
chrX	152766805	152766898	19272356	0	-	0.580645	(0.53,0.59]	chrX	1637049	1	CDS	CDS:EXON_MRNA	MAGEA6	ENSG00000197172.10	ENST00000329342.9:ENST00000616035.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.92962	3.61869	4.30776	0.00407289	0.0012954	0.0324137	0.0136936
chr8	142727693	142727776	9645790	0	+	0.710843	(0.59,1]	chr8	730676	4	CDS	CDS:EXON_MRNA	THEM6	ENSG00000130193.8	ENST00000336138.4:ENST00000520217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	3.24972	3.618615	3.98751	0.0301044	0.00314037	0.129773	0.0264943
chr13	99520035	99520129	13865211	0	+	0.414894	(0.39,0.42]	chr13	1087152	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	96	2	3.12234	3.6185099999999997	4.11468	1.28898e-4	9.5703e-9	0.0024153	7.47962e-7
chr14	103519666	103519764	14795315	0	-	0.438776	(0.42,0.455]	chr14	1159531	1	UTR3	UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.68905	3.618485	4.54792	0.00119301	9.66045e-4	0.0128249	0.0115185
chr16	89304606	89304705	16077352	0	-	0.545455	(0.53,0.59]	chr16	1292159	26	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.37399	3.6181550000000002	4.86232	0.0126178	4.57805e-4	0.0717599	0.00608573
chr6	43512166	43512266	7707986	0	-	0.63	(0.59,1]	chr6	591413	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	86	2	2.97653	3.6180950000000003	4.25966	0.00142722	2.95373e-5	0.0153442	6.69635e-4
chr4	77718148	77718247	5480558	0	-	0.313131	(0.29,0.33]	chr4	439325	49	UTR3	UTR3:EXON_MRNA	CNOT6L	ENSG00000138767.13	ENST00000504123.6:ENST00000649644.1:ENST00000515506.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.67277	3.618065	4.56336	0.0255386	8.8231e-4	0.117089	0.0101404
chr5	98855281	98855381	6725368	0	-	0.33	(0.29,0.33]	chr5	517718	14	UTR3	UTR3:EXON_MRNA	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.67277	3.618065	4.56336	0.0255386	8.8231e-4	0.117089	0.0101404
chr6	80042364	80042445	7258746	0	+	0.320988	(0.29,0.33]	chr6	559313	3	UTR3	UTR3:EXON_MRNA	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.67277	3.618065	4.56336	0.0255386	8.8231e-4	0.117089	0.0101404
chr8	94871942	94872002	9489792	0	+	0.316667	(0.29,0.33]	chr8	722096	2	CDS	CDS:UTR3:EXON_MRNA	INTS8	ENSG00000164941.14	ENST00000523731.6:ENST00000524333.5:ENST00000343161.8:ENST00000523206.5:ENST00000520526.5:ENST00000519736.5:ENST00000521155.5:ENST00000523352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.67277	3.618065	4.56336	0.0255386	8.8231e-4	0.117089	0.0101404
chrX	78130923	78131021	19129688	0	-	0.295918	(0.29,0.33]	chrX	1626920	13	UTR3	UTR3:EXON_MRNA	TAF9B	ENSG00000187325.5	ENST00000341864.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.67277	3.618065	4.56336	0.0255386	8.8231e-4	0.117089	0.0101404
chr3	52528860	52528935	4183425	0	-	0.506667	(0.49,0.53]	chr3	352913	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NT5DC2	ENSG00000168268.11	ENST00000307076.8:ENST00000422318.7:ENST00000492555.5:ENST00000459839.5:ENST00000489316.5:ENST00000471522.5:ENST00000487779.5:ENST00000490681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.99849	3.6180399999999997	4.23759	0.00630123	0.00436474	0.0445415	0.0335517
chr4	147634831	147634931	5151658	0	+	0.5	(0.49,0.53]	chr4	416887	5	UTR3	UTR3:EXON_MRNA:INTRON	TMEM184C	ENSG00000164168.8	ENST00000508208.5:ENST00000296582.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.99849	3.6180399999999997	4.23759	0.00630123	0.00436474	0.0445415	0.0335517
chr2	135851401	135851482	2898019	0	-	0.506173	(0.49,0.53]	chr2	258506	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1:ENST00000483902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.72252	3.61782	4.51312	0.0161474	0.00156636	0.0860154	0.0156889
chr8	144360961	144361015	9652301	0	+	0.518519	(0.49,0.53]	chr8	731971	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC52A2	ENSG00000185803.12	ENST00000675888.1:ENST00000532815.2:ENST00000675292.1:ENST00000530047.5:ENST00000527078.6:ENST00000674870.1:ENST00000526338.7:ENST00000402965.5:ENST00000329994.7:ENST00000526752.3:ENST00000533662.2:ENST00000534725.6:ENST00000674929.1:ENST00000675597.1:ENST00000643944.2:ENST00000675121.1:ENST00000676358.1:ENST00000675280.1:ENST00000526891.2:ENST00000675787.1:ENST00000674821.1:ENST00000676094.1:ENST00000674779.1:ENST00000675998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.72252	3.61782	4.51312	0.0161474	0.00156636	0.0860154	0.0156889
chrX	24888063	24888122	18620386	0	+	0.525424	(0.49,0.53]	chrX	1590233	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.72252	3.61782	4.51312	0.0161474	0.00156636	0.0860154	0.0156889
chrX	30251061	30251155	18640847	0	+	0.521277	(0.49,0.53]	chrX	1590564	6	CDS	CDS:EXON_MRNA	MAGEB1	ENSG00000214107.9	ENST00000378981.8:ENST00000397550.6:ENST00000397548.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.72252	3.61782	4.51312	0.0161474	0.00156636	0.0860154	0.0156889
chr3	49359916	49360013	4174070	0	-	0.453608	(0.42,0.455]	chr3	350894	9	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	31	351	2	3.45147	3.61781	3.78415	9.86051e-10	3.05305e-10	1.03557e-7	4.05661e-8
chr15	64155833	64155927	15339270	0	-	0.478723	(0.455,0.49]	chr15	1210863	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680343.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	124	2	3.44026	3.61755	3.79484	8.71641e-5	5.83398e-9	0.00177086	4.89037e-7
chr18	57549919	57550018	17137061	0	-	0.606061	(0.59,1]	chr18	1407062	57	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	160	2	2.74522	3.6173150000000005	4.48941	5.30049e-4	2.59295e-7	0.00739367	1.26346e-5
chr1	19339434	19339529	877775	0	-	0.505263	(0.49,0.53]	chr1	90666	8	UTR3	UTR3:EXON_MRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	107	2	3.53096	3.6173	3.70364	1.89513e-6	4.67029e-7	7.58027e-5	2.08387e-5
chr22	39020253	39020352	18368466	0	+	0.494949	(0.49,0.53]	chr22	1562849	20	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.60116	3.61727	4.63338	0.0056515	9.56909e-4	0.0422191	0.010724
chr8	26411381	26411478	9238664	0	+	0.402062	(0.39,0.42]	chr8	707583	11	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.29451	3.617235	3.93996	0.00841622	1.98354e-4	0.054565	0.00314412
chr21	43969679	43969779	18137504	0	+	0.52	(0.49,0.53]	chr21	1538533	4	SS5_PROX	SS5_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.38683	3.6171349999999998	4.84744	0.012654	3.70203e-4	0.0718207	0.00515475
chr1	112670032	112670132	411472	0	+	0.47	(0.455,0.49]	chr1	40539	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	91	2	2.48891	3.61712	4.74533	7.24922e-4	3.57868e-9	0.00911324	3.18911e-7
chr3	184321372	184321463	3949196	0	+	0.538462	(0.53,0.59]	chr3	332414	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000484862.5:ENST00000441154.5:ENST00000428387.5:ENST00000434061.6:ENST00000427607.5:ENST00000457456.5:ENST00000493299.1:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	110	2	2.4751	3.6170999999999998	4.7591	7.16255e-4	4.61883e-9	0.00901405	3.97687e-7
chr2	73249818	73249916	1885476	0	+	0.561224	(0.53,0.59]	chr2	178570	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000473786.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	83	2	3.53663	3.617025	3.69742	4.77731e-5	2.24538e-6	0.00109049	7.90567e-5
chr7	127703243	127703323	8515453	0	+	0.5	(0.49,0.53]	chr7	649690	2	CDS	CDS:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	3.4677	3.616975	3.76625	1.0134e-5	2.55367e-6	3.04784e-4	8.83735e-5
chr19	58550376	58550453	17413364	0	+	0.61039	(0.59,1]	chr19	1451222	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595974.5:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	4	105	2	2.57134	3.6169700000000002	4.6626	0.00259175	2.85e-6	0.0237245	9.64791e-5
chr1	32228498	32228524	127538	0	+	0.423077	(0.42,0.455]	chr1	15804	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.17397	3.6167550000000004	4.05954	0.00617886	0.0031821	0.0439741	0.0267094
chr16	27134242	27134338	15898618	0	-	0.427083	(0.42,0.455]	chr16	1272815	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P38	ENSG00000261557.1	ENST00000567658.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	3.17397	3.6167550000000004	4.05954	0.00617886	0.0031821	0.0439741	0.0267094
chr19	48795061	48795152	17603657	0	-	0.428571	(0.42,0.455]	chr19	1483207	1	UTR3	UTR3:EXON_MRNA	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.17397	3.6167550000000004	4.05954	0.00617886	0.0031821	0.0439741	0.0267094
chr2	54973155	54973198	2666105	0	-	0.418605	(0.39,0.42]	chr2	238468	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000491592.1:ENST00000485749.1:ENST00000402434.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	3.0503	3.61675	4.1832	0.00570576	4.52427e-7	0.0424438	2.03369e-5
chr11	59637108	59637207	12401026	0	-	0.343434	(0.33,0.36]	chr11	959467	5	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	1.82394	3.616745	5.40955	0.0494504	1.14206e-5	0.18557	3.08108e-4
chr5	118974122	118974214	6174261	0	+	0.413043	(0.39,0.42]	chr5	481546	1	PRIMIRNA	PRIMIRNA	MIR1244-2	ENSG00000283498.1	ENST00000636449.1	miRNA	primary_miRNA	miRNA	primary_miRNA	14	152	2	3.03422	3.616715	4.19921	1.53611e-6	9.12654e-10	6.31971e-5	9.7135e-8
chr14	100354444	100354505	14788710	0	-	0.459016	(0.455,0.49]	chr14	1158728	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	83	2	2.92901	3.6166899999999997	4.30437	0.00141135	1.20326e-8	0.0151901	9.07473e-7
chr1	65598659	65598731	253288	0	+	0.472222	(0.455,0.49]	chr1	28827	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	3.11472	3.6166400000000003	4.1185600000000004	3.40155e-5	2.49433e-5	8.31666e-4	5.8178e-4
chr11	71451969	71452063	12007438	0	+	0.542553	(0.53,0.59]	chr11	924956	4	EXON_LNCRNA	EXON_LNCRNA	RP11-660L16.2	ENSG00000254682.1	ENST00000529369.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.0404	3.61664	5.19288	0.0362529	9.22873e-5	0.148525	0.0016906
chr11	119024909	119025009	12626329	0	-	0.58	(0.53,0.59]	chr11	979704	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.0404	3.61664	5.19288	0.0362529	9.22873e-5	0.148525	0.0016906
chr14	102049714	102049798	14495916	0	+	0.619048	(0.59,1]	chr14	1133280	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	1.79051	3.616435	5.44236	0.0396851	2.02004e-4	0.161349	0.00317801
chr5	37304790	37304843	6540086	0	-	0.358491	(0.33,0.36]	chr5	506540	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	3.1043	3.6163499999999997	4.1284	0.00407303	5.89179e-4	0.0324137	0.00743488
chr3	186581994	186582077	3957104	0	+	0.481928	(0.455,0.49]	chr3	333568	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNAJB11:RP11-134F2.8	ENSG00000090520.12:ENSG00000283149.1	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1:ENST00000681543.1:ENST00000679794.1:ENST00000418776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	95	2	2.63872	3.61631	4.5939	0.00510378	7.72693e-10	0.0390492	8.32805e-8
chr18	9536926	9537025	16753990	0	+	0.454545	(0.42,0.455]	chr18	1381612	11	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	3.36019	3.6162599999999996	3.87233	2.44137e-5	4.86008e-6	6.30952e-4	1.51731e-4
chr1	153663018	153663075	1298411	0	-	0.508772	(0.49,0.53]	chr1	130382	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	3.54747	3.61623	3.68499	2.9991e-4	6.21089e-6	0.00472028	1.85694e-4
chr2	15496085	15496185	2529455	0	-	0.36	(0.33,0.36]	chr2	227526	67	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	3.1043	3.6161649999999996	4.12803	5.89179e-4	2.90032e-5	0.00743488	7.24986e-4
chr1	38847378	38847477	951353	0	-	0.464646	(0.455,0.49]	chr1	100269	14	EXON_MRNA	EXON_MRNA:INTRON	RRAGC:RP5-864K19.7	ENSG00000116954.8:ENSG00000273637.1	ENST00000373001.4:ENST00000622355.1:ENST00000474456.1:ENST00000493015.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	19	2	2.69053	3.616135	4.54174	0.0182983	0.00130137	0.0925808	0.0136936
chr11	44236292	44236375	11927508	0	+	0.481928	(0.455,0.49]	chr11	911617	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1:ENST00000684437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.69053	3.616135	4.54174	0.0182983	0.00130137	0.0925808	0.0136936
chr19	57306284	57306383	17405821	0	+	0.373737	(0.36,0.39]	chr19	1450093	21	EXON_LNCRNA	EXON_LNCRNA	CTC-444N24.11	ENSG00000268205.1	ENST00000593427.1	lncRNA	lncRNA	lncRNA	lncRNA	5	33	2	1.66365	3.616135	5.56862	0.0345996	4.90567e-6	0.143631	1.526e-4
chr5	150694157	150694240	6914626	0	-	0.481928	(0.455,0.49]	chr5	529238	2	CDS	CDS:EXON_MRNA	RBM22	ENSG00000086589.12	ENST00000199814.9:ENST00000520132.1:ENST00000447771.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.69053	3.616135	4.54174	0.0182983	0.00130137	0.0925808	0.0136936
chr8	140892167	140892267	10135642	0	-	0.48	(0.455,0.49]	chr8	761329	10	INTRON	INTRON	PTK2	ENSG00000169398.19	ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.69053	3.616135	4.54174	0.0182983	0.00130137	0.0925808	0.0136936
chr17	59697538	59697623	16619190	0	-	0.423529	(0.42,0.455]	chr17	1365579	1	CDS	CDS:EXON_MRNA:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.70611	3.616025	4.52594	0.00397496	0.00144145	0.0322851	0.0147046
chr9	133366598	133366675	10880487	0	-	0.571429	(0.53,0.59]	chr9	825864	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	3.2401	3.616005	3.99191	5.86351e-5	5.1985e-5	0.00129243	0.00106081
chr1	669094	669193	823722	0	-	0.575758	(0.53,0.59]	chr1	81486	361	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr1	15492750	15492846	866344	0	-	0.541667	(0.53,0.59]	chr1	88000	21	UTR3	UTR3:EXON_MRNA	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000424908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr1	112690011	112690098	411670	0	+	0.586207	(0.53,0.59]	chr1	40581	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOV10	ENSG00000155363.18	ENST00000413052.6:ENST00000369645.5:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr1	120319190	120319252	433998	0	+	0.532258	(0.53,0.59]	chr1	42850	1	EXON_PSEUDO	EXON_PSEUDO	CH17-472G23.1	ENSG00000274642.1	ENST00000612320.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr1	179085678	179085749	575728	0	+	0.56338	(0.53,0.59]	chr1	59716	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TOR3A	ENSG00000186283.14	ENST00000367627.8:ENST00000367625.8:ENST00000483887.1:ENST00000352445.10:ENST00000472001.1:ENST00000447595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr1	206588558	206588657	682406	0	+	0.555556	(0.53,0.59]	chr1	68949	17	UTR3	UTR3:EXON_MRNA	RASSF5	ENSG00000266094.8	ENST00000579436.7:ENST00000581503.6:ENST00000636182.1:ENST00000577571.5:ENST00000581888.1:ENST00000579942.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr1	243255193	243255270	1586355	0	-	0.584416	(0.53,0.59]	chr1	158047	3	UTR5	UTR5:EXON_MRNA	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000522522.5:ENST00000522995.1:ENST00000523581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr10	13195040	13195116	10933734	0	+	0.539474	(0.53,0.59]	chr10	832307	1	CDS	CDS:EXON_MRNA	MCM10	ENSG00000065328.17	ENST00000378714.8:ENST00000484800.6:ENST00000378694.1:ENST00000459751.1:ENST00000481292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr10	101782477	101782537	11665752	0	-	0.583333	(0.53,0.59]	chr10	889324	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPM3	ENSG00000107833.10	ENST00000370110.5:ENST00000474993.5:ENST00000462391.5:ENST00000468544.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr11	18615330	18615426	12303825	0	-	0.53125	(0.53,0.59]	chr11	951678	9	CDS	CDS:EXON_MRNA	SPTY2D1	ENSG00000179119.15	ENST00000336349.6:ENST00000536336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr11	62140978	62141044	11972425	0	+	0.575758	(0.53,0.59]	chr11	917579	2	CDS	CDS:EXON_MRNA	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8:ENST00000528375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr12	6865983	6866077	12714900	0	+	0.531915	(0.53,0.59]	chr12	987124	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	USP5	ENSG00000111667.14	ENST00000389231.9:ENST00000229268.13:ENST00000537267.5:ENST00000542371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr15	40472057	40472150	14881965	0	+	0.569892	(0.53,0.59]	chr15	1168643	9	CDS	CDS:EXON_MRNA	CHST14	ENSG00000169105.8	ENST00000306243.7:ENST00000559991.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr15	90229429	90229511	15098555	0	+	0.548781	(0.53,0.59]	chr15	1187813	2	UTR3	UTR3:EXON_MRNA	SEMA4B	ENSG00000185033.14	ENST00000332496.10:ENST00000411539.6:ENST00000558065.1:ENST00000559074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr15	90638445	90638512	15101928	0	+	0.58209	(0.53,0.59]	chr15	1188320	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CRTC3	ENSG00000140577.16	ENST00000268184.11:ENST00000420329.6:ENST00000558167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr17	8143526	8143614	16431807	0	-	0.568182	(0.53,0.59]	chr17	1340202	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PER1	ENSG00000179094.16	ENST00000317276.9:ENST00000581082.5:ENST00000582719.5:ENST00000578089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr17	75266653	75266739	16682946	0	-	0.569767	(0.53,0.59]	chr17	1373096	6	UTR3	UTR3:EXON_MRNA	MIF4GD	ENSG00000125457.15	ENST00000325102.13:ENST00000581777.2:ENST00000245551.9:ENST00000579297.5:ENST00000577542.5:ENST00000678201.1:ENST00000579194.6:ENST00000618645.5:ENST00000580571.5:ENST00000649805.1:ENST00000579119.5:ENST00000578305.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr19	1171234	1171333	17418194	0	-	0.535354	(0.53,0.59]	chr19	1452279	22	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr19	45517462	45517562	17354001	0	+	0.54	(0.53,0.59]	chr19	1439945	4	SS3_PROX	SS3_PROX:INTRON	VASP	ENSG00000125753.14	ENST00000589627.1:ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr2	189575160	189575240	3082541	0	-	0.575	(0.53,0.59]	chr2	272341	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5:ENST00000479598.5:ENST00000418714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr20	5772865	5772965	17663977	0	+	0.58	(0.53,0.59]	chr20	1493428	1	CDS_START	CDS_START:CDS:EXON_MRNA	SHLD1	ENSG00000171984.15	ENST00000378979.8:ENST00000303142.11:ENST00000445603.1:ENST00000442185.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr22	17726806	17726895	18291143	0	+	0.561798	(0.53,0.59]	chr22	1552150	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1:ENST00000485631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr22	31082567	31082667	18345196	0	+	0.55	(0.53,0.59]	chr22	1559187	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	SMTN	ENSG00000183963.19	ENST00000432777.5:ENST00000422839.5:ENST00000333137.12:ENST00000475548.5:ENST00000440425.5:ENST00000482444.5:ENST00000426927.5:ENST00000347557.6:ENST00000358743.5:ENST00000497697.5:ENST00000489337.5:ENST00000438223.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr22	36504682	36504766	18499561	0	-	0.535714	(0.53,0.59]	chr22	1578391	3	CDS	CDS:EXON_MRNA	FOXRED2	ENSG00000100350.15	ENST00000397224.9:ENST00000216187.10:ENST00000397223.4	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr3	183921201	183921299	4621760	0	-	0.571429	(0.53,0.59]	chr3	381491	14	UTR3	UTR3:EXON_MRNA	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr3	198218572	198218671	3994582	0	+	0.585859	(0.53,0.59]	chr3	336833	2	EXON_LNCRNA	EXON_LNCRNA	FAM157A	ENSG00000236438.7	ENST00000634862.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr5	140673988	140674077	6871711	0	-	0.561798	(0.53,0.59]	chr5	526142	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HARS1	ENSG00000170445.16	ENST00000431330.7:ENST00000675366.1:ENST00000674523.1:ENST00000676327.1:ENST00000675094.1:ENST00000506579.6:ENST00000675851.1:ENST00000675698.1:ENST00000675763.1:ENST00000675967.1:ENST00000675355.1:ENST00000675898.1:ENST00000457527.6:ENST00000675827.1:ENST00000504156.7:ENST00000307633.7:ENST00000504366.5:ENST00000509087.2:ENST00000438307.6:ENST00000512396.6:ENST00000645491.1:ENST00000675204.1:ENST00000643686.1:ENST00000646229.1:ENST00000507746.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr6	170661326	170661426	7556998	0	+	0.58	(0.53,0.59]	chr6	576995	209	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	785653	785744	8093292	0	+	0.549451	(0.53,0.59]	chr7	618354	1	UTR3	UTR3:EXON_MRNA	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000440747.5:ENST00000403952.3	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	10973871	10973961	8129213	0	+	0.544444	(0.53,0.59]	chr7	621327	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000476009.5:ENST00000490957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	16681300	16681352	8148932	0	+	0.538462	(0.53,0.59]	chr7	622124	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	100023714	100023786	8424986	0	+	0.541667	(0.53,0.59]	chr7	642399	1	CDS	CDS:EXON_MRNA:INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000482979.5:ENST00000432317.1:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	130022387	130022456	9062811	0	-	0.57971	(0.53,0.59]	chr7	692047	2	CDS	CDS:UTR3:EXON_MRNA	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	139716618	139716716	9104842	0	-	0.530612	(0.53,0.59]	chr7	694707	8	CDS	CDS:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr7	143863298	143863398	9116851	0	-	0.59	(0.53,0.59]	chr7	696356	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr8	28793806	28793896	9776105	0	-	0.566667	(0.53,0.59]	chr8	739096	1	CDS	CDS:UTR3:EXON_MRNA	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000522074.1:ENST00000520983.5:ENST00000523436.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chrX	3817694	3817778	18931942	0	-	0.559524	(0.53,0.59]	chrX	1613421	3	EXON_LNCRNA	EXON_LNCRNA	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000469903.5:ENST00000461011.6:ENST00000657193.1:ENST00000471090.5:ENST00000671495.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chrX	56564761	56564859	18709755	0	+	0.581633	(0.53,0.59]	chrX	1596564	9	CDS	CDS:EXON_MRNA	UBQLN2	ENSG00000188021.9	ENST00000338222.7	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chrX	154436426	154436516	18917925	0	+	0.555556	(0.53,0.59]	chrX	1611929	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.61294	3.6157500000000002	3.61856	0.0310038	0.0303021	0.130016	0.129773
chr20	59025767	59025866	17841489	0	+	0.313131	(0.29,0.33]	chr20	1508910	11	UTR3	UTR3:EXON_MRNA	TUBB1	ENSG00000101162.4	ENST00000217133.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.77585	3.615595	4.45534	0.0143131	0.00110984	0.0780602	0.0127344
chr22	40825201	40825297	18517875	0	-	0.302083	(0.29,0.33]	chr22	1580937	8	UTR3	UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.77585	3.615595	4.45534	0.0143131	0.00110984	0.0780602	0.0127344
chr11	14517879	14517954	12282196	0	-	0.386667	(0.36,0.39]	chr11	949730	1	CDS_START	CDS_START:CDS:EXON_MRNA	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000531156.5:ENST00000526443.5:ENST00000533068.5:ENST00000532256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	3.42891	3.61558	3.80225	1.85308e-4	9.14064e-5	0.00322093	0.0016849
chr12	6917939	6918013	12715437	0	+	0.540541	(0.53,0.59]	chr12	987249	1	CDS	CDS:EXON_MRNA:INTRON	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000538763.5:ENST00000545045.6:ENST00000535366.5:ENST00000441285.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	64	2	2.63871	3.6155749999999998	4.59244	0.00148857	1.19382e-6	0.0159153	4.64223e-5
chr8	123353312	123353411	10057212	0	-	0.434343	(0.42,0.455]	chr8	756665	35	INTRON	INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.47379	3.615535	4.75728	0.00996858	5.3817e-4	0.0621728	0.00686676
chrX	53378514	53378613	19076607	0	-	0.40404	(0.39,0.42]	chrX	1622486	45	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	14	152	2	3.39767	3.6153399999999998	3.83301	1.11984e-7	8.28179e-9	6.16527e-6	7.22574e-7
chr16	3782764	3782845	15831721	0	-	0.580247	(0.53,0.59]	chr16	1263875	2	CDS	CDS:EXON_MRNA	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.45844	3.61533	4.77222	0.00930921	6.67251e-4	0.0587563	0.00867533
chr14	102726604	102726703	14500033	0	+	0.474747	(0.455,0.49]	chr14	1133640	2	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	3.49424	3.615065	3.73589	2.30579e-4	9.02087e-6	0.00382267	2.53429e-4
chr12	8788665	8788764	13196218	0	-	0.545455	(0.53,0.59]	chr12	1033896	119	INTRON	INTRON	A2ML1-AS1	ENSG00000256661.1	ENST00000537288.1	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	3.61133	3.614945	3.61856	0.0303021	4.55298e-4	0.129773	0.00608573
chr2	30259161	30259257	1706800	0	+	0.552083	(0.53,0.59]	chr2	167573	17	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	3.61133	3.614945	3.61856	0.0303021	4.55298e-4	0.129773	0.00608573
chr12	89589906	89590004	13460817	0	-	0.377551	(0.36,0.39]	chr12	1058683	20	UTR3	UTR3:EXON_MRNA	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000359142.7:ENST00000261173.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.63115	3.614925	4.5987	0.0245975	9.0208e-4	0.114841	0.0102618
chr20	38012279	38012375	17962671	0	-	0.385417	(0.36,0.39]	chr20	1522288	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1:ENST00000487362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.63115	3.614925	4.5987	0.0245975	9.0208e-4	0.114841	0.0102618
chr3	41236348	41236423	3432589	0	+	0.466667	(0.455,0.49]	chr3	298560	1	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1:ENST00000465552.2:ENST00000482042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	113	2	2.83283	3.614915	4.397	6.06795e-4	6.48592e-10	0.00817698	7.11131e-8
chr1	54216140	54216208	200467	0	+	0.602941	(0.59,1]	chr1	25605	1	CDS	CDS:EXON_MRNA	MRPL37	ENSG00000116221.15	ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000398219.2	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.99438	3.61484	4.2353	0.0165254	0.00776449	0.0873033	0.050813
chr17	64003810	64003894	16636190	0	-	0.607143	(0.59,1]	chr17	1368042	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5:ENST00000584084.1:ENST00000584403.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.99438	3.61484	4.2353	0.0165254	0.00776449	0.0873033	0.050813
chr8	102864096	102864193	9984799	0	-	0.56701	(0.53,0.59]	chr8	753514	4	UTR5	UTR5:EXON_MRNA:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	2.95437	3.614815	4.27526	2.85501e-4	1.03921e-5	0.00456926	2.85526e-4
chr5	32417719	32417792	6519539	0	-	0.39726	(0.39,0.42]	chr5	505039	2	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	3.46792	3.614665	3.76141	2.14058e-4	7.10972e-5	0.00359478	0.00136974
chr15	41356089	41356140	14885997	0	+	0.352941	(0.33,0.36]	chr15	1169338	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.63456	3.614565	4.59457	0.00707461	8.56859e-7	0.0478528	3.50542e-5
chr15	74417876	74417969	15374517	0	-	0.655914	(0.59,1]	chr15	1215192	1	CDS	CDS:UTR5:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.28778	3.61454	4.9413	0.0556537	0.00191468	0.191528	0.0190905
chr3	47916044	47916138	4164419	0	-	0.457447	(0.455,0.49]	chr3	348579	2	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.85172	3.614325	4.37693	0.010864	4.5365e-6	0.0643837	1.42727e-4
chr16	69340283	69340383	15723524	0	+	0.52	(0.49,0.53]	chr16	1252003	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NIP7	ENSG00000132603.15	ENST00000563364.3:ENST00000569637.6:ENST00000254940.10:ENST00000254941.6:ENST00000565034.1:ENST00000562131.1:ENST00000567202.5:ENST00000562523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.38097	3.614205	4.84744	0.0425419	3.70203e-4	0.167547	0.00515475
chr18	36800254	36800311	17079138	0	-	0.491228	(0.49,0.53]	chr18	1403230	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5:ENST00000589049.5:ENST00000591823.5:ENST00000585635.5:ENST00000590692.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.38097	3.614205	4.84744	0.0425419	3.70203e-4	0.167547	0.00515475
chr4	37855621	37855681	4793331	0	+	0.516667	(0.49,0.53]	chr4	395314	1	CDS	CDS:UTR3:EXON_MRNA	PGM2	ENSG00000169299.14	ENST00000381967.9:ENST00000512556.1:ENST00000510084.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.38097	3.614205	4.84744	0.0425419	3.70203e-4	0.167547	0.00515475
chr9	124405374	124405432	10850036	0	-	0.465517	(0.455,0.49]	chr9	821901	2	CDS	CDS:EXON_MRNA:INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.35644	3.61415	4.87186	0.00555877	2.33781e-4	0.0405952	0.00385436
chr14	75134298	75134396	14709069	0	-	0.326531	(0.29,0.33]	chr14	1152525	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	34	2	2.58845	3.614095	4.63974	4.81181e-4	4.30021e-4	0.00677016	0.00581002
chr8	123236921	123236991	9588633	0	+	0.585714	(0.53,0.59]	chr8	727204	2	EXON_PSEUDO	EXON_PSEUDO	UBA52P5	ENSG00000243498.2	ENST00000461723.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	30	2	2.78899	3.61381	4.43863	0.00254763	0.00245784	0.0233955	0.0221765
chr17	16441832	16441925	16142095	0	+	0.387097	(0.36,0.39]	chr17	1300762	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000658116.1:ENST00000475953.5:ENST00000470491.6:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	24	272	2	3.13552	3.613735	4.09195	2.49571e-7	4.75753e-12	1.37651e-5	9.00117e-10
chr7	6403301	6403396	8114071	0	+	0.389474	(0.36,0.39]	chr7	620430	10	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	9	96	2	3.60476	3.6137	3.62264	8.733e-7	2.28972e-7	3.95338e-5	1.13488e-5
chr5	177592624	177592675	6407863	0	+	0.627451	(0.59,1]	chr5	498316	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000505521.1:ENST00000507723.1:ENST00000513799.5:ENST00000507578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	253	2	1.61978	3.6136350000000004	5.60749	0.0317775	5.97159e-11	0.134199	8.60901e-9
chr10	17233850	17233931	10938817	0	+	0.518519	(0.49,0.53]	chr10	832994	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1:ENST00000495528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	2.91806	3.6134199999999996	4.30878	1.17657e-4	7.12421e-6	0.00206264	2.28404e-4
chr16	164617	164686	15480684	0	+	0.666667	(0.59,1]	chr16	1224162	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3:ENST00000496585.1	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	31	794	2	3.01004	3.613405	4.21677	1.30286e-6	5.11759e-10	5.00764e-5	6.35131e-8
chr3	141963811	141963887	4483376	0	-	0.394737	(0.39,0.42]	chr3	372584	1	CDS	CDS:UTR3:EXON_MRNA	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000474279.3:ENST00000467667.5:ENST00000478006.5:ENST00000497579.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	3.32811	3.613295	3.89848	0.00182819	9.30194e-5	0.0183913	0.00169783
chr2	65311340	65311438	2708745	0	-	0.387755	(0.36,0.39]	chr2	241397	6	UTR3	UTR3:EXON_MRNA	SPRED2	ENSG00000198369.10	ENST00000356388.9	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	1.92623	3.61323	5.30023	0.0166541	1.38946e-5	0.0881353	3.94563e-4
chr5	127533704	127533786	6204842	0	+	0.5	(0.49,0.53]	chr5	483439	2	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.49143	3.6131849999999996	3.73494	0.0189345	6.13943e-5	0.0934721	0.00122382
chr5	178055659	178055756	6410844	0	+	0.525773	(0.49,0.53]	chr5	498581	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	FAM153CP:RP11-889L3.1	ENSG00000204677.13:ENSG00000218227.3	ENST00000652765.1:ENST00000651508.1:ENST00000652706.2:ENST00000511189.3:ENST00000652372.1:ENST00000651413.2:ENST00000651496.2:ENST00000652760.2:ENST00000651248.2:ENST00000662167.1:ENST00000652262.2:ENST00000669380.1:ENST00000652571.2:ENST00000651447.2:ENST00000651969.2:ENST00000668044.1:ENST00000663123.1:ENST00000651697.2:ENST00000652167.1:ENST00000652694.2:ENST00000663505.1:ENST00000667131.1:ENST00000651398.2:ENST00000511511.6:ENST00000506096.6:ENST00000651406.1:ENST00000652057.1:ENST00000652464.2:ENST00000511819.6:ENST00000477964.1	lncRNA	retained_intron	lncRNA:transcribed_processed_pseudogene	retained_intron:lncRNA:transcribed_processed_pseudogene	3	47	2	3.54118	3.613085	3.68499	2.9991e-4	4.50577e-5	0.00472028	9.4221e-4
chrX	47803593	47803693	18688753	0	+	0.46	(0.455,0.49]	chrX	1593631	4	EXON_PSEUDO	EXON_PSEUDO	WASF4P	ENSG00000188459.4	ENST00000444248.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	33	2	3.57525	3.61302	3.65079	5.24878e-4	3.61776e-4	0.00677371	0.00544764
chr10	70423141	70423240	11100462	0	+	0.343434	(0.33,0.36]	chr10	844350	15	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.14833	3.6129350000000002	5.07754	0.00253487	7.92926e-5	0.0233955	0.00150306
chr1	19327226	19327319	85660	0	+	0.591398	(0.59,1]	chr1	9691	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SLC66A1	ENSG00000040487.13	ENST00000375155.7:ENST00000375153.8:ENST00000469076.5:ENST00000400548.6:ENST00000497827.1:ENST00000432465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.68392	3.612875	4.54183	0.0202468	0.0070583	0.0984041	0.0478044
chr1	26774593	26774681	110950	0	+	0.590909	(0.59,1]	chr1	13337	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1:ENST00000636072.1:ENST00000466382.2:ENST00000636794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	31	2	2.68392	3.612875	4.54183	0.0202468	0.0070583	0.0984041	0.0478044
chr13	72727523	72727602	14071048	0	-	0.734177	(0.59,1]	chr13	1101997	1	CDS_START	CDS_START:CDS:EXON_MRNA	MZT1	ENSG00000204899.6	ENST00000377818.4	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.68392	3.612875	4.54183	0.0202468	0.0070583	0.0984041	0.0478044
chr2	47691157	47691246	2633795	0	-	0.595506	(0.59,1]	chr2	237030	6	EXON_PSEUDO	EXON_PSEUDO	AC079250.1	ENSG00000230979.3	ENST00000456046.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	2.68392	3.612875	4.54183	0.0202468	0.0070583	0.0984041	0.0478044
chr14	102049439	102049511	14495911	0	+	0.638889	(0.59,1]	chr14	1133276	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.59461	3.6128349999999996	4.63106	0.0259455	0.00537945	0.117079	0.0406564
chr15	57953915	57954014	15305093	0	-	0.555556	(0.53,0.59]	chr15	1208082	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	169	2	3.42122	3.6127700000000003	3.80432	1.28206e-6	1.91304e-8	5.45614e-5	1.36015e-6
chr1	151035220	151035318	469715	0	+	0.44898	(0.42,0.455]	chr1	47775	11	UTR3	UTR3:EXON_MRNA	PRUNE1	ENSG00000143363.17	ENST00000271620.8:ENST00000650332.1:ENST00000368936.5:ENST00000368935.1:ENST00000368934.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.86513	3.6125499999999997	5.35997	0.0357107	2.41298e-5	0.147298	5.6648e-4
chr1	93888989	93889089	1175425	0	-	0.41	(0.39,0.42]	chr1	115684	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.48556	3.6124599999999996	4.73936	0.00384158	3.05649e-7	0.0320512	1.45677e-5
chr17	1897853	1897950	16084545	0	+	0.453608	(0.42,0.455]	chr17	1293365	8	UTR3	UTR3:EXON_MRNA	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.37329	3.6123950000000002	3.8515	0.0119089	0.00136107	0.0686664	0.0141115
chr17	4704815	4704895	16418896	0	-	0.425	(0.42,0.455]	chr17	1337590	1	EXON_PSEUDO	EXON_PSEUDO	RP11-314A20.1	ENSG00000213939.4	ENST00000466297.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	3.37329	3.6123950000000002	3.8515	0.0119089	0.00136107	0.0686664	0.0141115
chr19	7639861	7639933	17217833	0	+	0.444444	(0.42,0.455]	chr19	1416899	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.37329	3.6123950000000002	3.8515	0.0119089	0.00136107	0.0686664	0.0141115
chr21	38121525	38121601	18118221	0	+	0.447368	(0.42,0.455]	chr21	1536322	2	EXON_LNCRNA	EXON_LNCRNA	DSCR8	ENSG00000198054.12	ENST00000478613.5:ENST00000469658.5:ENST00000400477.7:ENST00000495344.5:ENST00000465532.5:ENST00000357704.8	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	3.37329	3.6123950000000002	3.8515	0.0119089	0.00136107	0.0686664	0.0141115
chr6	135203285	135203354	7414945	0	+	0.42029	(0.42,0.455]	chr6	568348	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5:ENST00000529297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.37329	3.6123950000000002	3.8515	0.0119089	0.00136107	0.0686664	0.0141115
chr8	4787716	4787812	9177801	0	+	0.447917	(0.42,0.455]	chr8	700904	5	EXON_PSEUDO	EXON_PSEUDO	PAICSP4	ENSG00000254244.1	ENST00000517543.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	3.37329	3.6123950000000002	3.8515	0.0119089	0.00136107	0.0686664	0.0141115
chr1	160290156	160290216	1328668	0	-	0.433333	(0.42,0.455]	chr1	135961	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.19078	3.612305	4.03383	0.00310864	4.24324e-5	0.0274272	8.98949e-4
chr3	129397039	129397089	4444241	0	-	0.44	(0.42,0.455]	chr3	369377	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	RPL32P3	ENSG00000251474.6	ENST00000510078.5:ENST00000507287.5:ENST00000514355.5:ENST00000515866.5:ENST00000499631.2:ENST00000506593.1:ENST00000359025.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	35	2	3.19078	3.612305	4.03383	0.00310864	4.24324e-5	0.0274272	8.98949e-4
chr2	61877453	61877514	2691426	0	-	0.393443	(0.39,0.42]	chr2	240565	2	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	3.10925	3.612265	4.11528	4.03163e-5	7.73976e-7	9.6174e-4	3.2172e-5
chr9	73151864	73151924	10304592	0	+	0.333333	(0.33,0.36]	chr9	776000	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	3.3227	3.6121	3.9015	0.00222616	9.11613e-5	0.0211992	0.00168187
chr1	19608013	19608113	86930	0	+	0.42	(0.39,0.42]	chr1	9723	67	INTRON	INTRON	MICOS10:NBL1:MICOS10-NBL1	ENSG00000173436.15:ENSG00000158747.15:ENSG00000270136.6	ENST00000648702.1:ENST00000617872.4:ENST00000602662.1:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000602293.5:ENST00000602384.5:ENST00000602450.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	2.18155	3.61203	5.04251	0.0283931	2.52401e-8	0.127654	1.72157e-6
chr6	36968425	36968521	7683194	0	-	0.5625	(0.53,0.59]	chr6	589200	4	UTR3	UTR3:EXON_MRNA	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	3.07752	3.611985	4.14645	1.40512e-4	2.32261e-5	0.00237235	6.06413e-4
chr10	70422643	70422742	11100457	0	+	0.474747	(0.455,0.49]	chr10	844350	10	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.24865	3.61195	4.97525	0.00240656	1.38474e-4	0.0217576	0.00254294
chr5	116052009	116052102	6777489	0	-	0.537634	(0.53,0.59]	chr5	520016	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2287O16.1	ENSG00000185641.6	ENST00000469891.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	34	495	2	3.49703	3.61185	3.72667	4.44855e-9	1.06813e-10	4.17798e-7	1.43825e-8
chr3	31619752	31619830	3392324	0	+	0.371795	(0.36,0.39]	chr3	295056	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	3.10506	3.611815	4.11857	7.38785e-4	7.37081e-7	0.00924579	3.07785e-5
chr2	210433995	210434093	3145332	0	-	0.387755	(0.36,0.39]	chr2	277990	29	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.35745	3.61174	4.86603	0.00143393	1.68962e-4	0.0147046	0.00297945
chr11	67438091	67438186	12427899	0	-	0.694737	(0.59,1]	chr11	965332	6	UTR3	UTR3:EXON_MRNA	CORO1B	ENSG00000172725.14	ENST00000616321.4:ENST00000341356.10:ENST00000393893.5:ENST00000537042.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.32455	3.61156	4.89857	0.0520547	0.00182139	0.193787	0.0176016
chr17	78971575	78971675	16698068	0	-	0.63	(0.59,1]	chr17	1376214	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	2.32455	3.61156	4.89857	0.0520547	0.00182139	0.193787	0.0176016
chr4	128287590	128287690	5639529	0	-	0.73	(0.59,1]	chr4	449301	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000512483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.32455	3.61156	4.89857	0.0520547	0.00182139	0.193787	0.0176016
chr9	128163515	128163615	10476937	0	+	0.7	(0.59,1]	chr9	789633	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	C9orf16	ENSG00000171159.5	ENST00000372994.2:ENST00000492588.1:ENST00000489240.1:ENST00000486420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	32	2	2.32455	3.61156	4.89857	0.0520547	0.00182139	0.193787	0.0176016
chr6	147220858	147220958	7466596	0	+	0.29	[0,0.29]	chr6	571137	144	INTRON	INTRON	STXBP5	ENSG00000164506.14	ENST00000367481.7:ENST00000546097.5:ENST00000321680.10:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.11257	3.6114349999999997	4.1103	0.00493104	0.00120521	0.0366648	0.0134827
chr1	7780439	7780538	29764	0	+	0.454545	(0.42,0.455]	chr1	3443	9	UTR3	UTR3:EXON_MRNA	VAMP3	ENSG00000049245.13	ENST00000054666.11	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.36247	3.611425	4.86038	0.0462889	3.34791e-4	0.176878	0.00472923
chr13	25096796	25096896	13647291	0	+	0.45	(0.42,0.455]	chr13	1075795	6	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.36247	3.611425	4.86038	0.0462889	3.34791e-4	0.176878	0.00472923
chr2	62222518	62222618	1845098	0	+	0.43	(0.42,0.455]	chr2	175154	3	CDS	CDS:EXON_MRNA	B3GNT2	ENSG00000170340.11	ENST00000301998.5:ENST00000405767.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.36247	3.611425	4.86038	0.0462889	3.34791e-4	0.176878	0.00472923
chr3	47413185	47413268	3456423	0	+	0.53012	(0.53,0.59]	chr3	301323	1	UTR3	UTR3:EXON_MRNA	PTPN23	ENSG00000076201.16	ENST00000602307.5:ENST00000265562.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	3.49159	3.611395	3.7312	6.29049e-5	1.38467e-5	0.00135218	3.5918e-4
chr18	12325562	12325656	16762277	0	+	0.723404	(0.59,1]	chr18	1382538	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000590967.5:ENST00000591208.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.84944	3.6113350000000004	4.37323	0.0128238	0.00990413	0.0719798	0.061536
chr3	33093684	33093784	4111940	0	-	0.64	(0.59,1]	chr3	343557	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	32	2	2.84944	3.6113350000000004	4.37323	0.0128238	0.00990413	0.0719798	0.061536
chr6	30491136	30491228	7111210	0	+	0.630435	(0.59,1]	chr6	544752	1	CDS	CDS:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5:ENST00000493699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	2.84944	3.6113350000000004	4.37323	0.0128238	0.00990413	0.0719798	0.061536
chr6	31691860	31691918	7661774	0	-	0.637931	(0.59,1]	chr6	585002	2	CDS	CDS:UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000498420.5:ENST00000496579.5:ENST00000492899.1:ENST00000477462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	32	2	2.84944	3.6113350000000004	4.37323	0.0128238	0.00990413	0.0719798	0.061536
chr7	149028408	149028492	9124994	0	-	0.77381	(0.59,1]	chr7	697009	1	UTR5	UTR5:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9:ENST00000413966.1	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	2.84944	3.6113350000000004	4.37323	0.0128238	0.00990413	0.0719798	0.061536
chr4	99949272	99949329	5551592	0	-	0.666667	(0.59,1]	chr4	443722	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	67	2	3.19	3.6113150000000003	4.03263	0.0039188	1.11254e-4	0.0314356	0.00213212
chr11	123059472	123059550	12636983	0	-	0.423077	(0.42,0.455]	chr11	980716	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	153	2	2.60119	3.6113049999999998	4.62142	3.07225e-5	4.32189e-11	6.88631e-4	7.06358e-9
chr14	96562818	96562893	14476211	0	+	0.44	(0.42,0.455]	chr14	1130883	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1:ENST00000553940.1:ENST00000555508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	34	2	3.31161	3.61129	3.91097	0.00186138	8.75299e-5	0.018635	0.0016272
chr11	18399341	18399430	11831469	0	+	0.280899	[0,0.29]	chr11	906001	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000535451.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.64823	3.611195	4.57416	0.0216669	6.75561e-4	0.103121	0.00873562
chr22	41179983	41180077	18378994	0	+	0.265957	[0,0.29]	chr22	1564241	12	UTR3	UTR3:EXON_MRNA	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.64823	3.611195	4.57416	0.0216669	6.75561e-4	0.103121	0.00873562
chr7	156891169	156891269	9147738	0	-	0.26	[0,0.29]	chr7	699283	539	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.64823	3.611195	4.57416	0.0216669	6.75561e-4	0.103121	0.00873562
chr21	9820719	9820819	18158636	0	-	0.62	(0.59,1]	chr21	1541889	40	INTRON	INTRON	LINC01667	ENSG00000280081.4	ENST00000651050.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	43	2	2.47837	3.611075	4.74378	0.00970721	0.00312942	0.0608296	0.0264364
chr17	40389120	40389219	16538732	0	-	0.363636	(0.36,0.39]	chr17	1354547	7	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000577541.1	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	3.4589	3.610835	3.76277	9.87237e-5	5.57489e-8	0.00194682	3.38375e-6
chr5	100052500	100052597	6726273	0	-	0.453608	(0.42,0.455]	chr5	517931	7	EXON_PSEUDO	EXON_PSEUDO	MTATP6P2	ENSG00000270307.1	ENST00000603319.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	25	2	2.20599	3.610805	5.01562	0.0227797	1.01971e-4	0.105293	0.0019861
chr7	144648177	144648277	9120725	0	-	0.45	(0.42,0.455]	chr7	696680	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	TPK1:EEF1A1P10	ENSG00000196511.14:ENSG00000243746.1	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5:ENST00000475365.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	6	73	2	3.31013	3.610725	3.91132	8.58184e-6	3.67157e-6	2.65793e-4	1.1967e-4
chr1	160351695	160351743	496733	0	+	0.458333	(0.455,0.49]	chr1	53464	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000421914.5:ENST00000459963.5:ENST00000424645.6:ENST00000424754.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.20069	3.610545	4.0204	0.00736097	0.00285821	0.0490627	0.0245841
chr9	121349255	121349323	10836506	0	-	0.455882	(0.455,0.49]	chr9	820998	3	CDS	CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.20069	3.610545	4.0204	0.00736097	0.00285821	0.0490627	0.0245841
chr9	137805332	137805431	10517977	0	+	0.484848	(0.455,0.49]	chr9	797705	16	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1:ENST00000486164.5:ENST00000488242.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	3.20069	3.610545	4.0204	0.00736097	0.00285821	0.0490627	0.0245841
chr1	19243949	19244015	877408	0	-	0.636364	(0.59,1]	chr1	90533	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000475079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	3.51277	3.610415	3.70806	5.14321e-4	1.00384e-4	0.00719062	0.00180872
chr19	4538403	4538495	17432451	0	-	0.663043	(0.59,1]	chr19	1455209	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTB-50L17.14:LRG1	ENSG00000267385.1:ENSG00000171236.10	ENST00000586020.1:ENST00000306390.7:ENST00000586883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	86	2	3.51277	3.610415	3.70806	5.14321e-4	1.00384e-4	0.00719062	0.00180872
chr6	49614853	49614937	7729698	0	-	0.357143	(0.33,0.36]	chr6	592963	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000646874.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	70	2	3.50238	3.6100250000000003	3.71767	2.53718e-6	1.89639e-6	9.65472e-5	6.87959e-5
chr17	39204648	39204744	16219496	0	+	0.40625	(0.39,0.42]	chr17	1310975	1	UTR3	UTR3:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	135	2	2.65899	3.60995	4.56091	8.66237e-5	1.16337e-10	0.00177086	1.55211e-8
chr2	37203948	37204047	1742665	0	+	0.323232	(0.29,0.33]	chr2	169570	22	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000392061.6	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.31653	3.6098800000000004	3.90323	0.00261621	9.15815e-5	0.0238929	0.00168607
chr15	43765529	43765566	14896484	0	+	0.324324	(0.29,0.33]	chr15	1171286	1	CDS	CDS:UTR3:EXON_MRNA	PDIA3	ENSG00000167004.13	ENST00000300289.10:ENST00000434494.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	2.63813	3.609725	4.58132	0.00803229	1.32634e-8	0.0528968	9.90655e-7
chr5	10433782	10433881	5875535	0	+	0.424242	(0.42,0.455]	chr5	462061	2	UTR3	UTR3:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	76	2	2.1708	3.60965	5.0485	0.001598	2.60143e-8	0.0169168	1.76574e-6
chr8	47773592	47773689	9815458	0	-	0.237113	[0,0.29]	chr8	742453	6	UTR3	UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.67519	3.609375	5.54356	0.0299989	2.29995e-6	0.130016	8.86852e-5
chr1	234606839	234606938	1558272	0	-	0.353535	(0.33,0.36]	chr1	155933	27	UTR3	UTR3:EXON_MRNA	IRF2BP2	ENSG00000168264.11	ENST00000366609.4:ENST00000366610.7	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	3.4399	3.60931	3.77872	1.29517e-4	9.40708e-6	0.00242147	2.61824e-4
chr12	67312730	67312830	12934142	0	+	0.42	(0.39,0.42]	chr12	1008120	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.32811	3.6090150000000003	3.88992	0.00182819	4.22388e-6	0.0183913	1.34652e-4
chr1	161340593	161340655	499884	0	+	0.548387	(0.53,0.59]	chr1	54169	1	CDS	CDS:UTR3:EXON_MRNA	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.2596	3.6089249999999997	4.95825	0.0185443	2.87508e-4	0.0948733	0.00457439
chr1	739893	739992	824448	0	-	0.555556	(0.53,0.59]	chr1	81551	39	INTRON	INTRON	RP11-206L10.17:RP11-206L10.2	ENSG00000230021.10:ENSG00000228327.3	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	1	22	2	2.77921	3.60892	4.43863	0.0132865	0.00254763	0.0740932	0.0233955
chr1	212824313	212824409	704213	0	+	0.583333	(0.53,0.59]	chr1	71483	4	EXON_PSEUDO	EXON_PSEUDO	RP11-348H3.2	ENSG00000236905.2	ENST00000449334.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	2.77921	3.60892	4.43863	0.0132865	0.00254763	0.0740932	0.0233955
chr19	11131280	11131316	17230302	0	+	0.555556	(0.53,0.59]	chr19	1419639	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.54844	3.6089	4.66936	0.00663226	0.00103174	0.0461575	0.0121443
chr7	44840955	44841012	8800434	0	-	0.561404	(0.53,0.59]	chr7	671379	2	CDS	CDS:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.54844	3.6089	4.66936	0.00663226	0.00103174	0.0461575	0.0121443
chr19	34399555	34399631	17300560	0	+	0.486842	(0.455,0.49]	chr19	1429891	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	171	2	3.29549	3.60887	3.92225	9.55146e-8	1.19744e-8	5.36694e-6	9.91331e-7
chr1	21872689	21872760	891183	0	-	0.661972	(0.59,1]	chr1	92490	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.27639	3.608845	4.9413	0.00420132	0.00191468	0.0328662	0.0190905
chr16	2457213	2457309	15492815	0	+	0.552083	(0.53,0.59]	chr16	1227392	3	UTR3	UTR3:EXON_MRNA	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.21941	3.6088	3.99819	0.0111308	0.00266171	0.0665375	0.0240332
chr16	89304408	89304507	16077350	0	-	0.515152	(0.49,0.53]	chr16	1292159	24	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.78962	3.60876	4.4279	0.0129044	0.00196987	0.0725185	0.0193972
chr5	180791922	180792017	7007874	0	-	0.526316	(0.49,0.53]	chr5	537113	3	CDS	CDS:EXON_MRNA	MGAT1	ENSG00000131446.17	ENST00000307826.5:ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000427865.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.78962	3.60876	4.4279	0.0129044	0.00196987	0.0725185	0.0193972
chr1	9731297	9731390	854622	0	-	0.580645	(0.53,0.59]	chr1	86240	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.35511	3.608715	4.86232	0.0445399	4.57805e-4	0.172163	0.00608573
chr1	54883737	54883773	1030902	0	-	0.583333	(0.53,0.59]	chr1	107057	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1:ENST00000648494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.35511	3.608715	4.86232	0.0445399	4.57805e-4	0.172163	0.00608573
chr7	75983737	75983796	8342167	0	+	0.576271	(0.53,0.59]	chr7	636187	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1:ENST00000439269.1:ENST00000496888.5:ENST00000487247.5:ENST00000495770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.35511	3.608715	4.86232	0.0445399	4.57805e-4	0.172163	0.00608573
chr1	91729888	91729973	1164475	0	-	0.435294	(0.42,0.455]	chr1	114948	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.57051	3.6083749999999997	4.64624	0.0265466	8.75333e-4	0.120071	0.0101169
chr9	32450408	32450507	10233132	0	+	0.434343	(0.42,0.455]	chr9	769192	4	UTR3	UTR3:EXON_MRNA	ACO1	ENSG00000122729.19	ENST00000541043.5:ENST00000379923.5:ENST00000309951.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.57051	3.6083749999999997	4.64624	0.0265466	8.75333e-4	0.120071	0.0101169
chr2	149579430	149579502	2932989	0	-	0.361111	(0.36,0.39]	chr2	260053	1	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.29974	3.60827	4.9168	0.00926291	6.76244e-8	0.0586162	4.00219e-6
chrX	72273310	72273389	19107965	0	-	0.506329	(0.49,0.53]	chrX	1625635	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS4X	ENSG00000198034.11	ENST00000470671.1:ENST00000316084.10:ENST00000486733.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	230	2	3.37846	3.60816	3.83786	1.37544e-8	9.46744e-9	1.02252e-6	8.11113e-7
chr2	24707038	24707133	1681686	0	+	0.378947	(0.36,0.39]	chr2	164394	6	CDS	CDS:EXON_MRNA	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.38564	3.60808	4.83052	0.0476159	3.15227e-4	0.17993	0.00452711
chr11	85996877	85996929	12526114	0	-	0.461538	(0.455,0.49]	chr11	972210	2	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	16	147	2	2.88638	3.608065	4.32975	8.8411e-7	1.27857e-7	3.59876e-5	7.7505e-6
chr11	32928026	32928123	11899006	0	+	0.494845	(0.49,0.53]	chr11	908995	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5:ENST00000528155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.78794	3.60792	4.4279	0.00251838	0.00196987	0.0226599	0.0193972
chr6	30723339	30723434	7112211	0	+	0.589474	(0.53,0.59]	chr6	545065	1	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	277	2	3.54385	3.60785	3.67185	2.31635e-8	4.00582e-9	1.60393e-6	3.83283e-7
chr1	109217234	109217333	397897	0	+	0.383838	(0.36,0.39]	chr1	38551	22	INTRON	INTRON	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	3.18348	3.6078399999999995	4.0322	0.00588589	0.00310315	0.0427941	0.0263402
chr1	155330752	155330842	483799	0	+	0.388889	(0.36,0.39]	chr1	50857	3	UTR3	UTR3:EXON_MRNA	RUSC1	ENSG00000160753.16	ENST00000368352.10:ENST00000368354.7:ENST00000368347.8:ENST00000368349.8:ENST00000471876.5:ENST00000292254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.18348	3.6078399999999995	4.0322	0.00588589	0.00310315	0.0427941	0.0263402
chr2	197401462	197401525	3106398	0	-	0.380952	(0.36,0.39]	chr2	274535	2	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.18348	3.6078399999999995	4.0322	0.00588589	0.00310315	0.0427941	0.0263402
chr20	50583297	50583395	17816215	0	+	0.387755	(0.36,0.39]	chr20	1507152	7	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.18348	3.6078399999999995	4.0322	0.00588589	0.00310315	0.0427941	0.0263402
chr6	159682392	159682492	8048229	0	-	0.38	(0.36,0.39]	chr6	615183	135	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000535459.5:ENST00000541573.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.18348	3.6078399999999995	4.0322	0.00588589	0.00310315	0.0427941	0.0263402
chrX	103216416	103216516	18792575	0	+	0.44	(0.42,0.455]	chrX	1602160	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.66761	3.607765	4.54792	9.66045e-4	5.19201e-4	0.0115185	0.00671984
chrX	92113245	92113338	19142673	0	-	0.473118	(0.455,0.49]	chrX	1627984	1	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	45	2	2.83859	3.60776	4.37693	0.00215336	4.5365e-6	0.0208395	1.42727e-4
chr1	28200665	28200762	912948	0	-	0.57732000000000006	(0.53,0.59]	chr1	95445	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	3.12943	3.60771	4.08599	4.81557e-4	3.38473e-5	0.00677016	7.45971e-4
chr1	160307162	160307245	1328865	0	-	0.566265	(0.53,0.59]	chr1	136051	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.65894	3.6076699999999997	4.5564	0.0193255	1.54434e-6	0.0943643	5.75816e-5
chr6	24705645	24705743	7638779	0	-	0.306122	(0.29,0.33]	chr6	581798	9	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	6	55	2	3.04457	3.607615	4.17066	1.09203e-4	4.83539e-7	0.00209994	2.14792e-5
chr4	47706723	47706811	4824053	0	+	0.363636	(0.36,0.39]	chr4	397622	5	EXON_PSEUDO	EXON_PSEUDO	RP11-100N21.1	ENSG00000242262.1	ENST00000487352.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	49	2	3.37824	3.607595	3.83695	1.61189e-4	6.15027e-6	0.00287786	1.8415e-4
chr6	131740223	131740301	7403724	0	+	0.448718	(0.42,0.455]	chr6	567483	1	CDS	CDS:UTR3:EXON_MRNA	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.66697	3.6074450000000002	4.54792	0.0190326	9.66045e-4	0.0958835	0.0115185
chr6	160084994	160085062	7528757	0	+	0.441176	(0.42,0.455]	chr6	574930	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000475834.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.66697	3.6074450000000002	4.54792	0.0190326	9.66045e-4	0.0958835	0.0115185
chr9	14922204	14922303	10581567	0	-	0.444444	(0.42,0.455]	chr9	800961	13	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CLCN3P1:LDHAP4	ENSG00000232000.3:ENSG00000214110.3	ENST00000652129.1:ENST00000397561.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_processed_pseudogene	8	91	2	3.46617	3.60738	3.74859	1.15347e-5	2.68524e-7	3.09736e-4	1.46137e-5
chr1	10399043	10399063	39689	0	+	0.7	(0.59,1]	chr1	4766	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000487775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.76802	3.607365	4.44671	0.0158525	0.00931497	0.0854671	0.0586162
chr4	41935395	41935484	4809290	0	+	0.651685	(0.59,1]	chr4	396911	4	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9:ENST00000510383.1:ENST00000504986.6:ENST00000506794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.76802	3.607365	4.44671	0.0158525	0.00931497	0.0854671	0.0586162
chr21	37202823	37202919	18115592	0	+	0.447917	(0.42,0.455]	chr21	1536145	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	2.81191	3.607335	4.40276	0.0017618	6.31824e-4	0.0180053	0.0078507
chr8	37877198	37877288	9794356	0	-	0.422222	(0.42,0.455]	chr8	740424	2	CDS	CDS:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.81191	3.607335	4.40276	0.0017618	6.31824e-4	0.0180053	0.0078507
chr12	55727159	55727249	13347095	0	-	0.555556	(0.53,0.59]	chr12	1050352	1	CDS	CDS:UTR5:EXON_MRNA	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000420846.7:ENST00000552692.5:ENST00000546939.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5:ENST00000546457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	139	2	3.17379	3.60733	4.04087	8.38179e-6	2.5857e-8	2.38248e-4	1.91859e-6
chr20	57407646	57407746	17837042	0	+	0.69	(0.59,1]	chr20	1508356	2	CDS	CDS:UTR3:EXON_MRNA	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	2.4994	3.6072499999999996	4.7151	0.0333573	0.00412279	0.137922	0.0325842
chr5	133052012	133052091	6226635	0	+	0.721519	(0.59,1]	chr5	484720	1	UTR5	UTR5:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.11074	3.6071	5.10346	0.0305	8.40506e-4	0.130204	0.00981548
chr11	112020306	112020404	12135695	0	+	0.428571	(0.42,0.455]	chr11	934753	14	UTR3	UTR3:EXON_MRNA	DIXDC1	ENSG00000150764.14	ENST00000440460.7:ENST00000615255.1:ENST00000618522.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.81137	3.607065	4.40276	0.0120386	0.0017618	0.0700876	0.0180053
chr12	111933957	111934030	13541878	0	-	0.438356	(0.42,0.455]	chr12	1065494	2	CDS	CDS:UTR3:EXON_MRNA	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.81137	3.607065	4.40276	0.0120386	0.0017618	0.0700876	0.0180053
chrX	154351638	154351696	19277983	0	-	0.517241	(0.49,0.53]	chrX	1638249	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	3.48945	3.607025	3.7246	1.36405e-5	9.31926e-6	3.54667e-4	2.86425e-4
chr6	33290715	33290745	7121655	0	+	0.5	(0.49,0.53]	chr6	547534	1	CDS	CDS:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	PFDN6:MIR6834	ENSG00000204220.12:ENSG00000284064.1	ENST00000395131.5:ENST00000395134.3:ENST00000374607.5:ENST00000374610.6:ENST00000374606.10:ENST00000491382.1:ENST00000622807.1:ENST00000463584.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	3	31	2	2.46958	3.60698	4.74438	0.00344146	5.91752e-4	0.0292838	0.00743488
chr9	105721536	105721628	10400435	0	+	0.423913	(0.42,0.455]	chr9	783669	1	CDS	CDS:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.41282	3.6067299999999998	4.80064	5.84644e-4	3.0479e-4	0.00740531	0.00472028
chr4	38688876	38688973	4796572	0	+	0.680412	(0.59,1]	chr4	395562	4	CDS	CDS:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	3.38886	3.60671	3.82456	3.02854e-4	4.08624e-5	0.00472028	8.76602e-4
chr6	106971091	106971188	7876583	0	-	0.371134	(0.36,0.39]	chr6	603137	14	UTR3	UTR3:EXON_MRNA	CD24	ENSG00000272398.6	ENST00000619133.4:ENST00000606017.2:ENST00000615659.1:ENST00000620405.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.62565	3.60656	4.58747	0.0219469	6.55819e-4	0.103959	0.00860229
chr1	12208320	12208420	47312	0	+	0.59	(0.53,0.59]	chr1	6130	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.34461	3.60642	4.86823	0.0457008	4.35895e-4	0.168044	0.00623608
chr1	32173280	32173380	127041	0	+	0.49	(0.455,0.49]	chr1	15636	25	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	21	2	3.40009	3.60642	3.81275	0.0138827	0.00120619	0.0760883	0.0129255
chr11	47839842	47839916	12389989	0	-	0.486486	(0.455,0.49]	chr11	957565	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.40009	3.60642	3.81275	0.0138827	0.00120619	0.0760883	0.0129255
chr2	97793473	97793553	2795431	0	-	0.4625	(0.455,0.49]	chr2	249820	2	CDS	CDS:EXON_MRNA	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000409721.2:ENST00000480724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.40009	3.60642	3.81275	0.0138827	0.00120619	0.0760883	0.0129255
chr20	2656096	2656182	17652868	0	+	0.581395	(0.53,0.59]	chr20	1492192	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP56:SNORD86	ENSG00000101361.17:ENSG00000212498.1	ENST00000651302.1:ENST00000329276.10:ENST00000480992.5:ENST00000484998.5:ENST00000612233.1:ENST00000467196.5:ENST00000616692.1:ENST00000415272.2:ENST00000492135.5:ENST00000391196.1:ENST00000466447.5:ENST00000480447.5	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.34461	3.60642	4.86823	0.0457008	4.35895e-4	0.168044	0.00623608
chr8	11837987	11838087	9202061	0	+	0.48	(0.455,0.49]	chr8	703061	2	SS3_PROX	SS3_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.40009	3.60642	3.81275	0.0138827	0.00120619	0.0760883	0.0129255
chr2	38482613	38482708	1748007	0	+	0.547368	(0.53,0.59]	chr2	169990	9	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	23	2	3.20874	3.6063350000000005	4.00393	0.0108084	0.00278422	0.064368	0.0241009
chr20	38130218	38130318	17962933	0	-	0.59	(0.53,0.59]	chr20	1522306	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.20874	3.6063350000000005	4.00393	0.0108084	0.00278422	0.064368	0.0241009
chr7	143598734	143598834	8582882	0	+	0.54	(0.53,0.59]	chr7	655911	8	EXON_PSEUDO	EXON_PSEUDO	TCAF1P1	ENSG00000223459.6	ENST00000414990.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	23	2	3.20874	3.6063350000000005	4.00393	0.0108084	0.00278422	0.064368	0.0241009
chr9	129006761	129006845	10482860	0	+	0.559524	(0.53,0.59]	chr9	791187	2	UTR3	UTR3:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.20874	3.6063350000000005	4.00393	0.0108084	0.00278422	0.064368	0.0241009
chrX	41674679	41674777	19049241	0	-	0.306122	(0.29,0.33]	chrX	1619182	28	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643853.1:ENST00000643831.2:ENST00000647118.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	1.99415	3.606255	5.21836	0.0333928	3.15783e-5	0.140128	7.02218e-4
chr17	82727825	82727919	16385162	0	+	0.404255	(0.39,0.42]	chr17	1332817	8	UTR3	UTR3:EXON_MRNA:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000571594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.71912	3.60618	4.49324	0.0163125	0.00108192	0.0866586	0.0124943
chr2	157314324	157314423	2152678	0	+	0.414141	(0.39,0.42]	chr2	198632	31	UTR3	UTR3:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.71912	3.60618	4.49324	0.0163125	0.00108192	0.0866586	0.0124943
chr7	142667552	142667635	8579757	0	+	0.445783	(0.42,0.455]	chr7	655275	4	UTR3	UTR3:EXON_MRNA	MTRNR2L6	ENSG00000270672.1	ENST00000604952.1	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.61085	3.606115	4.60138	7.93561e-4	1.3802e-8	0.00988333	1.0254e-6
chrX	49590650	49590731	18695223	0	+	0.54321	(0.53,0.59]	chrX	1595044	1	CDS_START	CDS_START:CDS:EXON_MRNA	GAGE2A	ENSG00000189064.8	ENST00000362097.1	protein_coding	protein_coding	protein_coding	protein_coding	11	160	2	3.11585	3.605935	4.09602	2.82594e-6	1.62316e-8	1.06029e-4	1.17683e-6
chr2	26385048	26385139	1687291	0	+	0.406593	(0.39,0.42]	chr2	164945	2	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.18	ENST00000613142.4:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.10425	3.60593	5.10761	0.00810106	5.12039e-5	0.0528637	0.00114668
chr2	112659296	112659389	2001880	0	+	0.483871	(0.455,0.49]	chr2	190042	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000433924.5:ENST00000413135.1:ENST00000480984.1:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	3.24286	3.605925	3.96899	2.77105e-4	2.27279e-7	0.00444204	1.1289e-5
chr1	2402195	2402295	7602	0	+	0.55	(0.53,0.59]	chr1	1717	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000378512.5:ENST00000443438.5:ENST00000488353.2:ENST00000462129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	78	2	2.51629	3.6058700000000004	4.69545	5.70328e-4	5.62788e-7	0.00779621	2.45035e-5
chr17	50134134	50134234	16584274	0	-	0.54	(0.53,0.59]	chr17	1362799	5	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.90978	3.6058649999999997	4.30195	0.00857883	0.00421989	0.0552386	0.0328662
chr9	121180801	121180900	10835883	0	-	0.393939	(0.39,0.42]	chr9	820919	28	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.44923	3.60586	3.76249	0.00105208	1.04037e-5	0.0123035	2.85665e-4
chr11	65351951	65352047	11984141	0	+	0.572917	(0.53,0.59]	chr11	920300	3	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.65894	3.6058399999999997	4.55274	0.0193255	0.00167999	0.0943643	0.0164993
chr12	49330824	49330921	12865892	0	+	0.587629	(0.53,0.59]	chr12	999159	8	CDS	CDS:EXON_MRNA	TROAP	ENSG00000135451.13	ENST00000551245.5:ENST00000257909.8:ENST00000547923.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.65894	3.6058399999999997	4.55274	0.0193255	0.00167999	0.0943643	0.0164993
chr3	186930525	186930602	3958579	0	+	0.584416	(0.53,0.59]	chr3	333920	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.65894	3.6058399999999997	4.55274	0.0193255	0.00167999	0.0943643	0.0164993
chrX	53560187	53560263	19077465	0	-	0.552632	(0.53,0.59]	chrX	1622771	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.65894	3.6058399999999997	4.55274	0.0193255	0.00167999	0.0943643	0.0164993
chr11	71434410	71434500	12444389	0	-	0.366667	(0.36,0.39]	chr11	966968	1	UTR3	UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.78659	3.60581	4.42503	0.0132982	0.00133228	0.0740932	0.0144372
chr3	133600789	133600881	4460505	0	-	0.369565	(0.36,0.39]	chr3	370635	7	UTR3	UTR3:EXON_MRNA:INTRON	TOPBP1	ENSG00000163781.14	ENST00000503338.5:ENST00000503464.1:ENST00000260810.10:ENST00000642236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.78659	3.60581	4.42503	0.0132982	0.00133228	0.0740932	0.0144372
chr16	28098068	28098162	15903488	0	-	0.521277	(0.49,0.53]	chr16	1273213	2	UTR3	UTR3:EXON_MRNA	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000568065.5	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.52637	3.60568	3.68499	6.68602e-4	2.9991e-4	0.00820018	0.00472028
chr14	22770542	22770625	14174772	0	+	0.506024	(0.49,0.53]	chr14	1110326	2	CDS	CDS:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000473744.5:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	3.60476	3.605645	3.60653	4.52633e-4	4.50981e-4	0.00642319	0.00605268
chr1	11080549	11080620	859292	0	-	0.450704	(0.42,0.455]	chr1	86847	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000472078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	2.81191	3.605425	4.39894	6.31824e-4	3.61951e-6	0.0078507	1.29307e-4
chr6	37864695	37864795	7138866	0	+	0.38	(0.36,0.39]	chr6	550275	443	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.18029	3.605245	5.0302	0.0077769	1.15931e-4	0.0517139	0.00204552
chr22	20934057	20934150	18300022	0	+	0.537634	(0.53,0.59]	chr22	1553639	4	CDS	CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	361	2	3.25189	3.6052299999999997	3.95857	1.46324e-8	8.32729e-10	1.07677e-6	9.75516e-8
chr19	38723613	38723667	17323691	0	+	0.537037	(0.53,0.59]	chr19	1434341	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	3.45404	3.605095	3.75615	2.16536e-4	1.27275e-5	0.00361336	3.35074e-4
chr2	232856860	232856958	2433839	0	+	0.520408	(0.49,0.53]	chr2	219595	1	UTR3	UTR3:EXON_MRNA	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.53011	3.604915	4.67972	0.00254862	6.94757e-4	0.0227869	0.00876781
chr19	11110651	11110711	17230078	0	+	0.533333	(0.53,0.59]	chr19	1419574	1	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1	protein_coding	protein_coding	protein_coding	protein_coding	4	66	2	3.51884	3.6047450000000003	3.69065	3.04331e-4	8.13068e-6	0.00472028	2.32341e-4
chr1	154253994	154254089	479971	0	+	0.547368	(0.53,0.59]	chr1	49671	2	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	2.69635	3.604705	4.51306	0.00112127	3.8713e-8	0.0128408	2.47685e-6
chr10	124408821	124408893	11729377	0	-	0.430556	(0.42,0.455]	chr10	895088	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.96788	3.604605	4.24133	0.00326918	0.00109784	0.0282494	0.0119666
chr3	139350976	139351060	3772121	0	+	0.452381	(0.42,0.455]	chr3	322577	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MRPS22	ENSG00000175110.13	ENST00000495075.5:ENST00000680020.1:ENST00000310776.9:ENST00000498505.5:ENST00000480938.5:ENST00000466690.5:ENST00000478464.5:ENST00000483545.1:ENST00000480644.1:ENST00000492644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.96788	3.604605	4.24133	0.00326918	0.00109784	0.0282494	0.0119666
chr5	37341165	37341242	6540468	0	-	0.441558	(0.42,0.455]	chr5	506636	2	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.96788	3.604605	4.24133	0.00326918	0.00109784	0.0282494	0.0119666
chr18	68687666	68687765	17164584	0	-	0.424242	(0.42,0.455]	chr18	1408793	1	CDS	CDS:UTR3:EXON_MRNA	TMX3	ENSG00000166479.10	ENST00000299608.7:ENST00000564631.5:ENST00000578765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.16214	3.60447	5.0468	0.00696724	1.33918e-4	0.0474632	0.00229039
chr8	101369171	101369266	9520941	0	+	0.442105	(0.42,0.455]	chr8	723783	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	NACA4P	ENSG00000228224.3	ENST00000419462.1:ENST00000519039.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	69	2	2.70611	3.6044	4.50269	0.00397496	3.28914e-8	0.0322851	2.15659e-6
chr6	27807625	27807715	7649603	0	-	0.611111	(0.59,1]	chr6	582801	1	CDS	CDS:EXON_MRNA	H2BC13	ENSG00000185130.5	ENST00000377401.3	protein_coding	protein_coding	protein_coding	protein_coding	6	153	2	3.13368	3.60438	4.07508	5.98616e-5	4.7217e-6	0.00119944	1.63311e-4
chr12	56714601	56714668	13352500	0	-	0.507463	(0.49,0.53]	chr12	1051851	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NACA:RP11-112B10.2	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000550343.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	642	2	3.30523	3.604295	3.90336	7.45529e-9	1.48959e-12	6.60394e-7	3.20796e-10
chrX	72273886	72273972	19107972	0	-	0.476744	(0.455,0.49]	chrX	1625639	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS4X	ENSG00000198034.11	ENST00000316084.10:ENST00000486733.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	317	2	3.58296	3.604255	3.62555	4.84992e-9	2.87161e-10	4.49431e-7	3.47263e-8
chr3	12835998	12836093	4042151	0	-	0.4	(0.39,0.42]	chr3	339345	17	UTR3	UTR3:EXON_MRNA	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	3.27036	3.603865	3.93737	7.80292e-5	1.09752e-5	0.00162998	2.97332e-4
chr15	78286040	78286133	15396427	0	-	0.537634	(0.53,0.59]	chr15	1217220	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	WDR61	ENSG00000140395.9	ENST00000560807.5:ENST00000558453.5:ENST00000267973.7:ENST00000558311.5:ENST00000559940.1:ENST00000559332.1:ENST00000558459.5:ENST00000560569.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	3.38347	3.60377	3.82407	0.0179666	0.00132446	0.0918323	0.0138834
chr17	63831505	63831560	16319021	0	+	0.545455	(0.53,0.59]	chr17	1323956	1	CDS	CDS:UTR3:EXON_MRNA	PSMC5	ENSG00000087191.13	ENST00000310144.11:ENST00000579147.5:ENST00000580864.5:ENST00000585242.5:ENST00000578570.5:ENST00000375812.8:ENST00000581882.5:ENST00000584880.5:ENST00000580063.1:ENST00000584657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	3.38347	3.60377	3.82407	0.0179666	0.00132446	0.0918323	0.0138834
chr19	48800297	48800397	17603722	0	-	0.55	(0.53,0.59]	chr19	1483238	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5:ENST00000599246.5:ENST00000598162.5:ENST00000595376.1:ENST00000601681.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	3.38347	3.60377	3.82407	0.0179666	0.00132446	0.0918323	0.0138834
chr17	81922406	81922505	16710054	0	-	0.585859	(0.53,0.59]	chr17	1377880	43	UTR3	UTR3:EXON_MRNA	MAFG	ENSG00000197063.11	ENST00000357736.9:ENST00000392366.7	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.83542	3.603765	4.37211	1.95776e-4	5.43864e-6	0.00310806	1.81467e-4
chr5	141516272	141516368	6875035	0	-	0.520833	(0.49,0.53]	chr5	526351	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.21702	3.6036799999999998	4.99034	0.00959574	1.6002e-4	0.0603269	0.00286408
chr11	34471433	34471522	11906345	0	+	0.573034	(0.53,0.59]	chr11	909837	1	UTR3	UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000534710.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.64837	3.603485	4.5586	0.0199467	0.00161229	0.0984041	0.0169168
chr9	124598886	124598976	10851259	0	-	0.588889	(0.53,0.59]	chr9	822028	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	NR6A1:RP11-164H5.1	ENSG00000148200.17:ENSG00000231744.1	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8:ENST00000440419.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	22	2	2.64837	3.603485	4.5586	0.0199467	0.00161229	0.0984041	0.0169168
chr17	41755553	41755648	16542980	0	-	0.589474	(0.53,0.59]	chr17	1356256	11	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.89916	3.60346	4.30776	0.00890406	0.00407289	0.0565003	0.0324137
chr3	195787724	195787823	4661144	0	-	0.555556	(0.53,0.59]	chr3	385270	91	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.89916	3.60346	4.30776	0.00890406	0.00407289	0.0565003	0.0324137
chr6	41907071	41907171	7701707	0	-	0.56	(0.53,0.59]	chr6	590631	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-973N23.5:MED20	ENSG00000288721.1:ENSG00000124641.16	ENST00000684631.1:ENST00000682596.1:ENST00000683313.1:ENST00000265350.9:ENST00000467535.5:ENST00000482361.1:ENST00000409312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	2.89916	3.60346	4.30776	0.00890406	0.00407289	0.0565003	0.0324137
chr17	59682628	59682710	16295468	0	+	0.353659	(0.33,0.36]	chr17	1321730	1	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	2.8357	3.603295	4.37089	2.16747e-5	5.4707e-6	5.17301e-4	1.82072e-4
chr1	52388539	52388637	1018851	0	-	0.438776	(0.42,0.455]	chr1	105610	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.35491	3.603205	3.8515	0.0119089	1.39104e-4	0.0686664	0.00235518
chr12	56615409	56615508	13351881	0	-	0.575758	(0.53,0.59]	chr12	1051701	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1:ENST00000546695.5:ENST00000549506.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	102	2	3.24839	3.60262	3.95685	4.84953e-6	2.90242e-6	1.51537e-4	1.08567e-4
chr1	201965487	201965543	661806	0	+	0.428571	(0.42,0.455]	chr1	66397	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	75	2	3.16223	3.602475	4.04272	4.45084e-4	1.24651e-7	0.00633715	6.75184e-6
chr1	43976772	43976824	169376	0	+	0.596154	(0.59,1]	chr1	21852	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP6V0B	ENSG00000117410.14	ENST00000472505.6:ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	113	2	3.42646	3.60238	3.7783	1.57704e-4	2.67645e-5	0.00261303	6.84173e-4
chr1	16459487	16459586	73184	0	+	0.606061	(0.59,1]	chr1	8515	6	UTR3	UTR3:EXON_MRNA	NECAP2	ENSG00000157191.20	ENST00000337132.10:ENST00000443980.6:ENST00000492095.5:ENST00000496239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	3.23348	3.6023300000000003	3.97118	0.00352837	1.3379e-4	0.0298518	0.00229039
chr20	38952420	38952520	17787114	0	+	0.39	(0.36,0.39]	chr20	1503190	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.52746	3.6023050000000003	4.67715	0.00115604	4.639e-7	0.0125677	2.31256e-5
chr16	29484877	29484972	15909901	0	-	0.526316	(0.49,0.53]	chr16	1274266	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-345J4.11:NPIPB12	ENSG00000288632.1:ENSG00000169203.16	ENST00000675579.1:ENST00000458643.3:ENST00000550665.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	20	2	2.64528	3.602285	4.55929	0.0202736	0.00116196	0.0984041	0.0130851
chr2	240961781	240961880	3249124	0	-	0.494949	(0.49,0.53]	chr2	286756	20	INTRON	INTRON	UICLM	ENSG00000233392.5	ENST00000418218.5	lncRNA	lncRNA	lncRNA	lncRNA	1	20	2	2.64528	3.602285	4.55929	0.0202736	0.00116196	0.0984041	0.0130851
chr20	1443748	1443848	17875433	0	-	0.51	(0.49,0.53]	chr20	1512357	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NSFL1C	ENSG00000088833.18	ENST00000476071.5:ENST00000555944.5:ENST00000353088.6:ENST00000461211.5:ENST00000216879.9:ENST00000381653.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.64528	3.602285	4.55929	0.0202736	0.00116196	0.0984041	0.0130851
chr7	45108900	45108975	8801071	0	-	0.506667	(0.49,0.53]	chr7	671576	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000478532.5:ENST00000461363.1:ENST00000477328.1:ENST00000471142.5:ENST00000475893.1:ENST00000482285.1:ENST00000495078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.64528	3.602285	4.55929	0.0202736	0.00116196	0.0984041	0.0130851
chr22	37874446	37874524	18364646	0	+	0.512821	(0.49,0.53]	chr22	1562195	2	CDS	CDS:EXON_MRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.41364	3.60225	4.79086	0.0112538	4.20783e-4	0.0665375	0.00611538
chr5	71658317	71658414	6026827	0	+	0.463918	(0.455,0.49]	chr5	472497	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	45	2	2.66563	3.602195	4.53876	0.0043075	1.31171e-6	0.0334284	5.53834e-5
chr5	1798835	1798935	6425943	0	-	0.45	(0.42,0.455]	chr5	501097	1	CDS_START	CDS_START:CDS:EXON_MRNA	MRPL36	ENSG00000171421.13	ENST00000505059.7:ENST00000505818.1:ENST00000508987.1:ENST00000382647.7:ENST00000510999.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.8096	3.6021400000000003	4.39468	0.00253237	0.00240483	0.0233955	0.0217482
chr9	122386540	122386636	10452712	0	+	0.572917	(0.53,0.59]	chr9	787080	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	3.02054	3.6021349999999996	4.18373	0.00577011	1.85867e-5	0.0426551	4.56627e-4
chr1	32226423	32226476	127514	0	+	0.528302	(0.49,0.53]	chr1	15797	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	94	2	3.4677	3.60207	3.73644	2.55367e-6	1.46923e-6	8.83735e-5	6.07568e-5
chr6	11723348	11723424	7602067	0	-	0.5	(0.49,0.53]	chr6	579788	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADTRP	ENSG00000111863.13	ENST00000505099.5:ENST00000414691.8:ENST00000514824.5:ENST00000513651.5:ENST00000512139.5:ENST00000229583.9:ENST00000503285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.92082	3.60207	4.28332	0.00827037	0.00338762	0.0534766	0.0288632
chr2	202882710	202882783	3128697	0	-	0.479452	(0.455,0.49]	chr2	276620	1	CDS	CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000467777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.84079	3.60193	4.36307	0.00218641	0.00201021	0.0208941	0.0190112
chrX	53631413	53631482	19078237	0	-	0.376812	(0.36,0.39]	chrX	1623018	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12:ENST00000471676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	3.17145	3.601825	4.0322	0.00588589	3.99865e-4	0.0427941	0.0054764
chr3	12836193	12836223	4042153	0	-	0.466667	(0.455,0.49]	chr3	339347	1	CDS	CDS:EXON_MRNA	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1	protein_coding	protein_coding	protein_coding	protein_coding	28	286	2	3.14905	3.6018	4.05455	1.41716e-8	9.27864e-10	1.04951e-6	1.07253e-7
chr15	88901050	88901150	15434298	0	-	0.36	(0.33,0.36]	chr15	1220390	1	SS5_PROX	SS5_PROX:INTRON	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.51797	3.601785	4.6856	0.0303594	3.92435e-4	0.130016	0.00583618
chr1	55061465	55061556	203826	0	+	0.626374	(0.59,1]	chr1	26174	2	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	204	2	3.1463	3.601695	4.05709	7.65561e-6	5.2652e-6	2.20857e-4	1.77323e-4
chr19	12668070	12668166	17469918	0	-	0.458333	(0.455,0.49]	chr19	1462817	1	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.69053	3.60142	4.51231	0.0182983	1.73754e-6	0.0925808	6.36428e-5
chr3	31622096	31622166	3392349	0	+	0.457143	(0.455,0.49]	chr3	295062	1	CDS	CDS:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.69053	3.60142	4.51231	0.0182983	1.73754e-6	0.0925808	6.36428e-5
chr1	1049969	1050037	2382	0	+	0.691176	(0.59,1]	chr1	551	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	3	51	2	2.16424	3.6012899999999997	5.03834	0.0123032	0.00108238	0.0705839	0.0118355
chr1	149926375	149926465	1287320	0	-	0.577778	(0.53,0.59]	chr1	127946	1	CDS	CDS:EXON_MRNA	SF3B4	ENSG00000143368.10	ENST00000271628.9:ENST00000457312.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.38347	3.601135	3.8188	0.00132446	1.54941e-4	0.0138834	0.0028049
chr11	60922558	60922656	11967054	0	+	0.510204	(0.49,0.53]	chr11	916468	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1:ENST00000540280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	3.51981	3.601135	3.68246	6.88328e-4	3.06313e-4	0.00876781	0.00442973
chr7	150373744	150373844	8614896	0	+	0.52	(0.49,0.53]	chr7	657739	9	UTR3	UTR3:EXON_MRNA:INTRON	REPIN1:ZNF775	ENSG00000214022.12:ENSG00000196456.13	ENST00000479668.5:ENST00000478789.5:ENST00000397281.6:ENST00000444957.3:ENST00000489432.7:ENST00000425389.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.51981	3.601135	3.68246	6.88328e-4	3.06313e-4	0.00876781	0.00442973
chr14	81266784	81266883	14730874	0	-	0.424242	(0.42,0.455]	chr14	1154061	45	INTRON	INTRON	STON2	ENSG00000140022.13	ENST00000555447.5:ENST00000649389.1:ENST00000614646.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.17397	3.6008450000000005	4.02772	0.0031821	4.30844e-5	0.0267094	0.00100091
chrX	148052232	148052317	18896961	0	+	0.6	(0.59,1]	chrX	1609379	1	EXON_PSEUDO	EXON_PSEUDO	FTH1P8	ENSG00000219507.4	ENST00000498161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	200	2	3.12435	3.60076	4.07717	1.94602e-4	1.32004e-7	0.00332928	7.10708e-6
chr8	140528746	140528846	10132130	0	-	0.47	(0.455,0.49]	chr8	760954	87	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.69344	3.600745	4.50805	0.0176068	0.00122223	0.0925619	0.0135383
chr14	54991212	54991306	14637000	0	-	0.489362	(0.455,0.49]	chr14	1146610	1	CDS	CDS:EXON_MRNA	WDHD1	ENSG00000198554.12	ENST00000360586.8:ENST00000420358.2:ENST00000567693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.83792	3.6004949999999996	4.36307	0.0110512	0.00218641	0.0665375	0.0208941
chr20	56395652	56395732	17834426	0	+	0.4875	(0.455,0.49]	chr20	1507887	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CSTF1	ENSG00000101138.12	ENST00000415828.5:ENST00000498689.5:ENST00000428552.1:ENST00000613138.1:ENST00000217109.9:ENST00000452950.1:ENST00000493039.5:ENST00000490539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.83792	3.6004949999999996	4.36307	0.0110512	0.00218641	0.0665375	0.0208941
chr4	150868243	150868305	5731538	0	-	0.467742	(0.455,0.49]	chr4	452911	2	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.83792	3.6004949999999996	4.36307	0.0110512	0.00218641	0.0665375	0.0208941
chr8	25507449	25507543	9236545	0	+	0.468085	(0.455,0.49]	chr8	707394	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000521098.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.83792	3.6004949999999996	4.36307	0.0110512	0.00218641	0.0665375	0.0208941
chr1	151051068	151051166	1291615	0	-	0.367347	(0.36,0.39]	chr1	128778	2	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.10506	3.600355	4.09565	7.38785e-4	2.81403e-5	0.00924579	6.42183e-4
chr14	23026088	23026188	14528760	0	-	0.54	(0.53,0.59]	chr14	1138373	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	3.21941	3.6002799999999997	3.98115	0.00266171	6.28226e-5	0.0240332	0.00124286
chr1	156338184	156338244	1314335	0	-	0.666667	(0.59,1]	chr1	133486	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3:ENST00000489870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	3.51277	3.600205	3.68764	1.00384e-4	4.42534e-5	0.00180872	0.00102453
chr6	139373318	139373406	7995336	0	-	0.795455	(0.59,1]	chr6	611350	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2:ENST00000618718.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.25872	3.60001	4.9413	0.0193473	0.00191468	0.0969537	0.0190905
chr1	51354554	51354651	1014236	0	-	0.43299	(0.42,0.455]	chr1	104961	4	UTR3	UTR3:EXON_MRNA	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.4231	3.5998799999999997	3.77666	0.00112541	1.85215e-4	0.0128481	0.00296795
chr16	70270267	70270340	15997072	0	-	0.506849	(0.49,0.53]	chr16	1284666	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	2.2094	3.59987	4.99034	0.00177255	1.6002e-4	0.0172721	0.00286408
chr10	17714974	17715072	10940195	0	+	0.336735	(0.33,0.36]	chr10	833147	3	UTR3	UTR3:EXON_MRNA	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.86073	3.599845	4.33896	0.0105608	0.00182033	0.0644466	0.0183913
chr4	26432774	26432872	4766698	0	+	0.336735	(0.33,0.36]	chr4	394281	19	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.86073	3.599845	4.33896	0.0105608	0.00182033	0.0644466	0.0183913
chr5	111107366	111107439	6144502	0	+	0.356164	(0.33,0.36]	chr5	480199	2	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.86073	3.599845	4.33896	0.0105608	0.00182033	0.0644466	0.0183913
chr8	97725867	97725967	9506398	0	+	0.36	(0.33,0.36]	chr8	722727	13	UTR3	UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.86073	3.599845	4.33896	0.0105608	0.00182033	0.0644466	0.0183913
chr1	201969468	201969554	661847	0	+	0.476744	(0.455,0.49]	chr1	66403	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	3.46389	3.5995850000000003	3.73528	9.14164e-4	1.49591e-6	0.0110519	5.62205e-5
chrX	119236463	119236539	18840400	0	+	0.671053	(0.59,1]	chrX	1605465	1	CDS	CDS:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.0542	3.599515	4.14483	0.0183207	0.00663549	0.0945306	0.0456243
chr19	47066157	47066256	17595813	0	-	0.242424	[0,0.29]	chr19	1481489	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000601973.1:ENST00000594019.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.4397	3.5994550000000003	4.75921	0.0388194	2.77035e-4	0.149227	0.00444204
chr18	9931885	9931962	16755901	0	+	0.532468	(0.53,0.59]	chr18	1381772	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5:ENST00000583879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	54	2	1.50469	3.5994	5.69411	0.0227099	5.01544e-6	0.10518	1.7067e-4
chr17	28944502	28944569	16488991	0	-	0.432836	(0.42,0.455]	chr17	1348485	1	UTR5	UTR5:EXON_MRNA:INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	3.34696	3.5992300000000004	3.8515	0.0119089	2.50958e-5	0.0686664	5.82876e-4
chr1	19101580	19101641	875872	0	-	0.491803	(0.49,0.53]	chr1	89970	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.3044	3.5992249999999997	4.89405	0.0509448	2.57983e-4	0.181793	0.00419998
chr4	80161324	80161422	4918656	0	+	0.510204	(0.49,0.53]	chr4	404565	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP39	ENSG00000244002.1	ENST00000467439.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	2.3044	3.5992249999999997	4.89405	0.0509448	2.57983e-4	0.181793	0.00419998
chr4	73091819	73091915	5466129	0	-	0.5625	(0.53,0.59]	chr4	437754	13	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	2.91231	3.599175	4.28604	1.23177e-4	9.59485e-6	0.00213941	2.93255e-4
chr3	4984747	4984843	3277658	0	+	0.447917	(0.42,0.455]	chr3	288722	12	UTR3	UTR3:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	12	138	2	3.33519	3.59882	3.86245	2.06836e-7	8.83107e-8	1.04683e-5	5.61099e-6
chr1	19154996	19155075	876480	0	-	0.544304	(0.53,0.59]	chr1	90204	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1:ENST00000497018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	2.16037	3.5987099999999996	5.03705	0.0254312	0.00020199200000000001	0.117089	0.00317801
chr19	11131805	11131901	17230309	0	+	0.541667	(0.53,0.59]	chr19	1419642	4	UTR3	UTR3:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.16037	3.5987099999999996	5.03705	0.0254312	0.00020199200000000001	0.117089	0.00317801
chr1	1222943	1223043	826426	0	-	0.55	(0.53,0.59]	chr1	81969	3	SS5_PROX	SS5_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr1	156732984	156733047	488311	0	+	0.555556	(0.53,0.59]	chr1	51828	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RRNAD1	ENSG00000143303.12	ENST00000368218.8:ENST00000368216.9:ENST00000519086.5:ENST00000524343.1:ENST00000484742.5:ENST00000476229.5:ENST00000517871.1:ENST00000522237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr1	161209538	161209595	499141	0	+	0.561404	(0.53,0.59]	chr1	54018	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000473321.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr10	74160631	74160731	11117776	0	+	0.56	(0.53,0.59]	chr10	846316	89	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr11	57236432	57236526	12393743	0	-	0.56383	(0.53,0.59]	chr11	958429	6	CDS	CDS:EXON_MRNA	APLNR	ENSG00000134817.11	ENST00000257254.3:ENST00000606794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr11	71995439	71995526	12010088	0	+	0.551724	(0.53,0.59]	chr11	925336	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNF121	ENSG00000137522.18	ENST00000530655.5:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1:ENST00000532379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr11	75266062	75266162	12465253	0	-	0.58	(0.53,0.59]	chr11	969336	61	UTR3	UTR3:EXON_MRNA	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532447.5	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr15	34239062	34239160	15203783	0	-	0.540816	(0.53,0.59]	chr15	1196735	2	CDS	CDS:EXON_MRNA	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000558950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr15	43408193	43408292	14895818	0	+	0.565657	(0.53,0.59]	chr15	1171084	17	UTR3	UTR3:EXON_MRNA	TUBGCP4	ENSG00000137822.13	ENST00000564079.6	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr16	1739307	1739406	15489043	0	+	0.575758	(0.53,0.59]	chr16	1226221	39	INTRON	INTRON	MAPK8IP3	ENSG00000138834.14	ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr17	21183593	21183667	16165976	0	+	0.554054	(0.53,0.59]	chr17	1304078	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DHRS7B	ENSG00000109016.17	ENST00000582161.5:ENST00000395511.7:ENST00000578426.5:ENST00000579303.5:ENST00000346603.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr17	63702915	63703013	16634193	0	-	0.540816	(0.53,0.59]	chr17	1367466	2	UTR3	UTR3:EXON_MRNA:INTRON	STRADA:RP11-51F16.8	ENSG00000266173.7:ENSG00000125695.12	ENST00000640870.1:ENST00000639835.1:ENST00000638708.1:ENST00000336174.12:ENST00000375840.9:ENST00000640999.1:ENST00000245865.10:ENST00000638702.1:ENST00000447001.8:ENST00000640979.1:ENST00000583085.1:ENST00000392950.9:ENST00000580553.1:ENST00000640086.1:ENST00000640679.1:ENST00000638276.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr17	72553733	72553833	16668380	0	-	0.59	(0.53,0.59]	chr17	1371647	193	INTRON	INTRON	LINC00511	ENSG00000227036.8	ENST00000648631.1:ENST00000648248.1:ENST00000650419.1:ENST00000581801.6:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000649793.2:ENST00000650131.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr19	5691790	5691875	17210646	0	+	0.552941	(0.53,0.59]	chr19	1415427	3	UTR3	UTR3:EXON_MRNA	RPL36	ENSG00000130255.13	ENST00000347512.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr19	17229050	17229126	17252739	0	+	0.578947	(0.53,0.59]	chr19	1423936	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	OCEL1	ENSG00000099330.9	ENST00000601529.5:ENST00000215061.9:ENST00000599588.5:ENST00000594283.5:ENST00000600232.5:ENST00000597836.5:ENST00000598068.5:ENST00000599286.1:ENST00000595573.1:ENST00000600826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr2	74854413	74854455	1893044	0	+	0.571429	(0.53,0.59]	chr2	179558	1	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1:ENST00000472302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr2	112652888	112652956	2001810	0	+	0.573529	(0.53,0.59]	chr2	190024	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000423633.5:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1:ENST00000492076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr21	45474975	45475075	18145529	0	+	0.59	(0.53,0.59]	chr21	1539686	1	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr3	14129486	14129561	3319353	0	+	0.533333	(0.53,0.59]	chr3	292043	2	CDS	CDS:UTR3:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000432444.1:ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr3	37047518	37047558	3411099	0	+	0.575	(0.53,0.59]	chr3	296343	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1:ENST00000673741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr3	183888358	183888449	3947309	0	+	0.538462	(0.53,0.59]	chr3	331637	5	EXON_PSEUDO	EXON_PSEUDO	RPSAP31	ENSG00000234371.6	ENST00000416648.1	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr3	183949971	183950048	4622057	0	-	0.571429	(0.53,0.59]	chr3	381548	1	CDS	CDS:UTR3:EXON_MRNA	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr5	177304774	177304850	6406812	0	+	0.539474	(0.53,0.59]	chr5	498049	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000502670.1:ENST00000503853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr7	158333822	158333922	9155946	0	-	0.58	(0.53,0.59]	chr7	699474	165	INTRON	INTRON	PTPRN2	ENSG00000155093.19	ENST00000389418.9:ENST00000409483.5:ENST00000389413.7:ENST00000389416.8	protein_coding	protein_coding	protein_coding	protein_coding	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr9	22012521	22012620	10223402	0	+	0.565657	(0.53,0.59]	chr9	768322	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-145E5.5:CDKN2B-AS1:UBA52P6	ENSG00000264545.2:ENSG00000240498.9:ENSG00000215221.2	ENST00000404796.3:ENST00000468603.7:ENST00000651588.1:ENST00000652420.1:ENST00000428597.6:ENST00000580576.6:ENST00000585267.5:ENST00000584351.5:ENST00000583719.5:ENST00000580467.5:ENST00000455933.7:ENST00000645313.2:ENST00000582072.5:ENST00000584816.5:ENST00000584020.5:ENST00000577551.5:ENST00000584637.5:ENST00000581051.5:ENST00000582301.5:ENST00000421632.2:ENST00000651904.1:ENST00000651784.1:ENST00000650946.1:ENST00000399822.2	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA:transcribed_processed_pseudogene	nonsense_mediated_decay:lncRNA:transcribed_processed_pseudogene	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr9	37637206	37637293	10646352	0	-	0.54023	(0.53,0.59]	chr9	805799	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-613M10.9:RAB1C	ENSG00000255872.3:ENSG00000233111.1	ENST00000540557.1:ENST00000409159.2	protein_coding	nonsense_mediated_decay	protein_coding:processed_pseudogene	nonsense_mediated_decay:processed_pseudogene	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr9	37879880	37879977	10648797	0	-	0.546392	(0.53,0.59]	chr9	805862	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-613M10.9:SLC25A51	ENSG00000255872.3:ENSG00000122696.14	ENST00000540557.1:ENST00000496760.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr9	136441363	136441461	10890543	0	-	0.530612	(0.53,0.59]	chr9	827449	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC16A	ENSG00000148396.18	ENST00000467838.2:ENST00000290037.10:ENST00000313050.11:ENST00000371706.7:ENST00000453963.5:ENST00000277537.10:ENST00000313084.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chrX	150231745	150231841	19265098	0	-	0.5625	(0.53,0.59]	chrX	1636623	8	EXON_PSEUDO	EXON_PSEUDO	XRCC6P2	ENSG00000234825.3	ENST00000457831.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	12	2	3.3733	3.5986849999999997	3.82407	0.0529193	0.0179666	0.18423900000000001	0.0918323
chr11	46429050	46429150	12381382	0	-	0.48	(0.455,0.49]	chr11	955794	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	AMBRA1:RP11-425L10.1	ENSG00000110497.15:ENSG00000244313.3	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000467930.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	14	164	2	3.41667	3.5985449999999997	3.78042	9.67804e-8	1.4529e-8	5.42932e-6	1.17124e-6
chr12	50099569	50099663	12870523	0	+	0.521277	(0.49,0.53]	chr12	999966	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9:ENST00000548573.5:ENST00000549274.1:ENST00000549526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.25514	3.598455	3.94177	0.0104929	0.00227467	0.063428	0.0209546
chr3	113795089	113795146	3675966	0	+	0.508772	(0.49,0.53]	chr3	314467	1	CDS	CDS:UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.25514	3.598455	3.94177	0.0104929	0.00227467	0.063428	0.0209546
chr1	175921974	175922059	560440	0	+	0.611765	(0.59,1]	chr1	58990	1	EXON_PSEUDO	EXON_PSEUDO	RPS29P5	ENSG00000230777.1	ENST00000452777.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	111	2	2.25537	3.598405	4.94144	0.00890868	4.87881e-7	0.0567495	2.16171e-5
chrX	1389629	1389727	18925601	0	-	0.622449	(0.59,1]	chrX	1612959	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	113	2	3.31617	3.59836	3.88055	3.02114e-4	1.27063e-5	0.00472028	3.34717e-4
chr2	128178518	128178569	2060387	0	+	0.352941	(0.33,0.36]	chr2	193352	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.473	3.598325	3.72365	8.77304e-4	3.19155e-4	0.0101202	0.00491578
chr2	27070651	27070742	2569024	0	-	0.505495	(0.49,0.53]	chr2	231076	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OST4	ENSG00000228474.6	ENST00000456793.2:ENST00000447619.5:ENST00000429985.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.42954	3.5982849999999997	3.76703	0.00105489	1.02216e-5	0.0123035	2.82175e-4
chr17	1661987	1662070	16401399	0	-	0.493976	(0.49,0.53]	chr17	1334892	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.51671	3.5982149999999997	4.67972	0.00768763	6.94757e-4	0.050396	0.00876781
chr1	109586805	109586882	399282	0	+	0.350649	(0.33,0.36]	chr1	38891	2	CDS	CDS:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.3227	3.598095	3.87349	0.00222616	4.76264e-6	0.0211992	1.49263e-4
chr17	78797134	78797233	16696832	0	-	0.50505	(0.49,0.53]	chr17	1376014	16	UTR3	UTR3:EXON_MRNA:INTRON	USP36	ENSG00000055483.19	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000542802.7:ENST00000592231.5:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.11892	3.598055	4.07719	0.0074411	0.00398244	0.0492519	0.0322851
chr12	63823697	63823796	12916683	0	+	0.434343	(0.42,0.455]	chr12	1006815	18	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	68	2	2.57051	3.5977699999999997	4.62503	0.0265466	1.11716e-8	0.120071	8.51741e-7
chr4	99076703	99076776	5548272	0	-	0.479452	(0.455,0.49]	chr4	443163	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	3.54461	3.5977	3.65079	3.61776e-4	4.40117e-5	0.00544764	9.24938e-4
chr17	39471566	39471664	16219789	0	+	0.489796	(0.455,0.49]	chr17	1311053	8	CDS	CDS:EXON_MRNA	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.46389	3.597655	3.73142	9.14164e-4	2.35261e-4	0.0110519	0.00356397
chr1	35506785	35506873	937694	0	-	0.5	(0.49,0.53]	chr1	98646	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000440579.5:ENST00000431916.5:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000494948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.56183	3.5976049999999997	4.63338	0.0261296	9.56909e-4	0.118976	0.010724
chr12	109535166	109535262	13082011	0	+	0.510417	(0.49,0.53]	chr12	1020019	5	UTR3	UTR3:EXON_MRNA	UBE3B	ENSG00000151148.14	ENST00000434735.6:ENST00000342494.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.56183	3.5976049999999997	4.63338	0.0261296	9.56909e-4	0.118976	0.010724
chr5	71658123	71658220	6026825	0	+	0.43299	(0.42,0.455]	chr5	472497	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	64	2	3.2633	3.59754	3.93178	4.36674e-5	3.1348e-6	9.18809e-4	1.15746e-4
chr1	199387902	199387998	651656	0	+	0.416667	(0.39,0.42]	chr1	65292	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC02789:RP11-104D3.2	ENSG00000231718.1:ENSG00000236468.1	ENST00000452199.1:ENST00000430498.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	18	2	2.86368	3.5974899999999996	4.3313	0.0101619	0.00209984	0.0627153	0.0204266
chr6	35468434	35468439	7130839	0	+	0.4	(0.39,0.42]	chr6	549007	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPL10A	ENSG00000198755.11	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000490335.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.86368	3.5974899999999996	4.3313	0.0101619	0.00209984	0.0627153	0.0204266
chr2	47100922	47101022	2630837	0	-	0.52	(0.49,0.53]	chr2	236879	102	INTRON	INTRON	STPG4:RP11-761B3.1	ENSG00000239605.11:ENSG00000273269.3	ENST00000496939.1:ENST00000464527.2:ENST00000422269.1:ENST00000482548.1:ENST00000445927.7:ENST00000449846.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	40	2	2.8671	3.5973949999999997	4.32769	0.0100489	6.54988e-6	0.0623334	1.94116e-4
chr20	49635716	49635815	18003182	0	-	0.353535	(0.33,0.36]	chr20	1525863	29	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.31697	3.5973100000000002	4.87765	0.00966431	2.2423e-4	0.0606263	0.00344776
chr15	68784488	68784541	15359908	0	-	0.471698	(0.455,0.49]	chr15	1213218	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000483551.6:ENST00000560303.1:ENST00000561430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	2.40508	3.5968999999999998	4.78872	0.0022198	2.38616e-9	0.0211918	2.24337e-7
chr1	167542198	167542297	1347838	0	-	0.383838	(0.36,0.39]	chr1	137992	13	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	2.88864	3.5968350000000004	4.30503	2.76515e-5	7.76959e-6	6.33595e-4	2.43892e-4
chr11	72007270	72007352	12447074	0	-	0.621951	(0.59,1]	chr11	967248	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000541584.5:ENST00000540626.5:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000541262.5:ENST00000545721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.32384	3.596805	4.86977	0.0157639	0.00246014	0.0851539	0.0230058
chr7	54755829	54755881	8823831	0	-	0.384615	(0.36,0.39]	chr7	673285	2	CDS	CDS:EXON_MRNA	SEC61G	ENSG00000132432.14	ENST00000395535.7:ENST00000415949.5:ENST00000352861.9:ENST00000450622.1:ENST00000460484.5:ENST00000480303.1:ENST00000461536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	2.69035	3.596705	4.50306	0.00123789	1.8245e-6	0.013161	7.35552e-5
chr3	98580301	98580396	4319540	0	-	0.252632	[0,0.29]	chr3	360252	10	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	118	2	3.07028	3.5966500000000003	4.12302	4.79066e-6	3.99205e-10	1.6466e-4	4.64097e-8
chrX	134427604	134427703	18863554	0	+	0.434343	(0.42,0.455]	chrX	1607356	24	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	3.58646	3.5965350000000003	3.60661	4.74984e-6	4.00386e-6	1.63715e-4	1.28934e-4
chr16	58716013	58716096	15967708	0	-	0.542169	(0.53,0.59]	chr16	1281418	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000494627.1:ENST00000564400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	62	2	3.20114	3.5965249999999997	3.99191	6.63641e-5	5.86351e-5	0.00129398	0.00129243
chrX	153694582	153694633	18915634	0	+	0.588235	(0.53,0.59]	chrX	1611196	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	96	2	3.53663	3.596435	3.65624	4.77731e-5	6.55192e-7	0.00109049	2.79409e-5
chr13	110973454	110973553	13897441	0	+	0.373737	(0.36,0.39]	chr13	1089162	70	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	28	2	3.49441	3.59638	3.69835	7.81559e-4	3.2708e-4	0.00927662	0.00502339
chr2	32531354	32531452	1714205	0	+	0.459184	(0.455,0.49]	chr2	168314	1	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.12994	3.59638	5.06282	0.0304832	1.16789e-4	0.130204	0.0020505
chr19	14565871	14565925	17243479	0	+	0.703704	(0.59,1]	chr19	1422068	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TECR	ENSG00000099797.15	ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000597607.5:ENST00000596073.6:ENST00000600395.5:ENST00000601187.1:ENST00000601350.5:ENST00000599101.5:ENST00000593775.5:ENST00000598408.1:ENST00000594958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	3.0542	3.596355	4.13851	0.00663549	5.66622e-5	0.0456243	0.00114182
chr8	144096663	144096744	9650301	0	+	0.518519	(0.49,0.53]	chr8	731515	2	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000525122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	101	2	2.436	3.59623	4.75646	5.17978e-4	3.50447e-9	0.00723206	3.13339e-7
chr11	61795838	61795932	11971305	0	+	0.617021	(0.59,1]	chr11	917378	5	CDS	CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000535723.1:ENST00000574708.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.84748	3.596175	4.34487	0.0124539	0.0123678	0.0712518	0.0705839
chr6	31880001	31880083	7663005	0	-	0.670732	(0.59,1]	chr6	585497	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EHMT2	ENSG00000204371.11	ENST00000375537.8:ENST00000375530.8:ENST00000375528.8:ENST00000395728.7:ENST00000480912.5:ENST00000494816.5:ENST00000461880.5:ENST00000478491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.84748	3.596175	4.34487	0.0124539	0.0123678	0.0712518	0.0705839
chrX	55055341	55055440	19084794	0	-	0.222222	[0,0.29]	chrX	1623799	5	EXON_PSEUDO	EXON_PSEUDO	HDGFL3P1	ENSG00000234466.1	ENST00000413370.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.8304	3.596115	4.36183	0.0121878	0.00170062	0.0701019	0.01759
chr1	110344347	110344445	404035	0	+	0.255102	[0,0.29]	chr1	39594	17	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	3.27636	3.5960349999999996	3.91571	1.5798e-4	1.15821e-5	0.00285004	3.099e-4
chr19	55643027	55643115	17397011	0	+	0.670455	(0.59,1]	chr19	1448833	1	UTR3	UTR3:EXON_MRNA:INTRON	ZNF581:ZNF580:CCDC106	ENSG00000171425.10:ENSG00000213015.9:ENSG00000173581.8	ENST00000587252.5:ENST00000325333.10:ENST00000585995.1:ENST00000592996.5:ENST00000543039.2:ENST00000545125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.39747	3.595985	4.7945	0.0430221	0.0031766	0.161091	0.0279054
chr16	30224511	30224610	15913245	0	-	0.555556	(0.53,0.59]	chr16	1275086	15	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.14885	3.5959149999999998	5.04298	0.0262993	1.91383e-4	0.117164	0.0032874
chr14	102001144	102001214	14495331	0	+	0.385714	(0.36,0.39]	chr14	1133041	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.76778	3.595905	4.42403	0.00365703	3.10878e-6	0.0307238	1.04078e-4
chr2	135840648	135840741	2897907	0	-	0.397849	(0.39,0.42]	chr2	258480	12	UTR3	UTR3:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.4030300000000002	3.595905	4.78878	0.00255585	4.27222e-4	0.0234576	0.00577513
chr1	153941230	153941289	1300114	0	-	0.559322	(0.53,0.59]	chr1	130641	1	CDS	CDS:EXON_MRNA	DENND4B	ENSG00000198837.10	ENST00000361217.9:ENST00000368646.6:ENST00000494683.1:ENST00000483561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.63316	3.59588	4.5586	0.00474401	0.00161229	0.0361423	0.0169168
chr10	73397163	73397218	11571626	0	-	0.563636	(0.53,0.59]	chr10	880905	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.63316	3.59588	4.5586	0.00474401	0.00161229	0.0361423	0.0169168
chr20	49952242	49952338	17814639	0	+	0.5625	(0.53,0.59]	chr20	1506968	1	UTR3	UTR3:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000622999.3:ENST00000244061.6:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.63316	3.59588	4.5586	0.00474401	0.00161229	0.0361423	0.0169168
chr7	100678231	100678299	8428129	0	+	0.573529	(0.53,0.59]	chr7	643345	3	CDS	CDS:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000451587.5:ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000431068.5:ENST00000393924.1:ENST00000469287.5:ENST00000470354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.63316	3.59588	4.5586	0.00474401	0.00161229	0.0361423	0.0169168
chr6	7295433	7295484	7586951	0	-	0.392157	(0.39,0.42]	chr6	578704	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000479485.5	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	2.48556	3.595865	4.70617	0.00384158	4.95266e-9	0.0320512	4.20617e-7
chr1	160335241	160335322	1329163	0	-	0.407407	(0.39,0.42]	chr1	136111	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000541366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	3.09736	3.595775	4.09419	5.79886e-4	2.95839e-5	0.00734771	7.34143e-4
chr12	54465066	54465116	13344095	0	-	0.4	(0.39,0.42]	chr12	1049906	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000548538.1:ENST00000546739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	3.09736	3.595775	4.09419	5.79886e-4	2.95839e-5	0.00734771	7.34143e-4
chr6	38676217	38676315	7689632	0	-	0.377551	(0.36,0.39]	chr6	589572	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	192	2	3.31967	3.59564	3.87161	1.91425e-8	2.04441e-9	1.36073e-6	2.13297e-7
chr17	41755078	41755173	16542975	0	-	0.589474	(0.53,0.59]	chr17	1356256	6	UTR3	UTR3:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	13	156	2	3.01911	3.5955399999999997	4.17197	9.28347e-7	5.8915e-7	3.75866e-5	2.82242e-5
chr1	52020932	52021012	1018061	0	-	0.4375	(0.42,0.455]	chr1	105391	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1:ENST00000472624.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.36247	3.5955	4.82853	0.0462889	1.59873e-7	0.176878	8.38121e-6
chr12	51242652	51242750	12876228	0	+	0.408163	(0.39,0.42]	chr12	1000617	1	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	1.87119	3.59544	5.31969	0.0373134	2.68682e-5	0.152293	6.19143e-4
chr16	20775908	20775978	15582786	0	+	0.428571	(0.42,0.455]	chr16	1234744	2	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	8	89	2	3.04577	3.595215	4.14466	8.74006e-6	5.95085e-7	2.46384e-4	2.84227e-5
chr1	149842405	149842501	1286944	0	-	0.625	(0.59,1]	chr1	127834	1	CDS	CDS:EXON_MRNA	H2AC18	ENSG00000203812.2	ENST00000369159.2	protein_coding	protein_coding	protein_coding	protein_coding	20	477	2	3.23832	3.595185	3.95205	7.90628e-7	2.57355e-8	3.63106e-5	1.75159e-6
chr10	92695256	92695354	11192360	0	+	0.357143	(0.33,0.36]	chr10	851136	6	UTR3	UTR3:EXON_MRNA	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000472590.6	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.14772	3.595185	4.04265	6.79194e-4	3.90477e-5	0.00876781	8.43777e-4
chr6	32180699	32180793	7118670	0	+	0.382979	(0.36,0.39]	chr6	547014	5	UTR3	UTR3:EXON_MRNA	RNF5	ENSG00000204308.8	ENST00000375094.4	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	3.11463	3.595035	4.07544	1.14911e-4	3.61377e-5	0.00203731	8.73633e-4
chrX	141907204	141907304	18883538	0	+	0.56	(0.53,0.59]	chrX	1608997	19	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	3.34735	3.594745	3.84214	1.46925e-4	6.5494e-6	0.0026854	1.94116e-4
chr12	121308400	121308479	13584793	0	-	0.468354	(0.455,0.49]	chr12	1069547	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000422342.2:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.52734	3.5947199999999997	4.6621	0.00792433	7.84472e-4	0.0523592	0.00927662
chr21	33517356	33517440	18220467	0	-	0.488095	(0.455,0.49]	chr21	1546353	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.52734	3.5947199999999997	4.6621	0.00792433	7.84472e-4	0.0523592	0.00927662
chr11	62152075	62152174	11972550	0	+	0.59596	(0.59,1]	chr11	917625	2	UTR3	UTR3:EXON_MRNA	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.55837	3.594715	4.63106	0.00709491	0.00537945	0.0479177	0.0406564
chr17	40391231	40391284	16538756	0	-	0.415094	(0.39,0.42]	chr17	1354558	1	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	TOP2A:Y_RNA	ENSG00000131747.15:ENSG00000222881.1	ENST00000423485.6:ENST00000578412.1:ENST00000410949.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:retained_intron	5	63	2	3.52475	3.59471	3.66467	3.60066e-4	1.59359e-6	0.00544157	5.91589e-5
chr1	224365878	224365934	728688	0	+	0.410714	(0.39,0.42]	chr1	73633	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CNIH4	ENSG00000143771.12	ENST00000366858.7:ENST00000366857.9:ENST00000465271.6:ENST00000366860.9:ENST00000468318.5:ENST00000366856.3:ENST00000477413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	68	2	3.10925	3.594665	4.08008	4.03163e-5	1.01757e-6	9.6174e-4	4.04731e-5
chr1	89933663	89933762	349100	0	+	0.464646	(0.455,0.49]	chr1	34169	6	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.12843	3.59463	4.06083	0.00392855	3.56832e-5	0.0322851	7.81595e-4
chr7	103498076	103498164	8963227	0	-	0.477273	(0.455,0.49]	chr7	686105	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.12843	3.59463	4.06083	0.00392855	3.56832e-5	0.0322851	7.81595e-4
chr3	127606263	127606337	3723443	0	+	0.621622	(0.59,1]	chr3	318244	3	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.36593	3.59459	4.82325	0.0141097	0.002381	0.077233	0.0216895
chr11	68614347	68614441	12001075	0	+	0.308511	(0.29,0.33]	chr11	923850	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.38576	3.5944899999999995	4.80322	0.0439193	2.14303e-4	0.163572	0.00359478
chr1	38863976	38864075	951532	0	-	0.424242	(0.42,0.455]	chr1	100303	16	UTR3	UTR3:EXON_MRNA:INTRON	RP5-864K19.7:MYCBP	ENSG00000273637.1:ENSG00000214114.9	ENST00000622355.1:ENST00000397572.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	33	2	1.7601	3.5943949999999996	5.42869	0.0312663	1.60756e-5	0.132093	4.07445e-4
chr17	80139091	80139162	16704276	0	-	0.492958	(0.49,0.53]	chr17	1376657	2	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000647795.1:ENST00000576547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	3.11892	3.59417	4.06942	0.00398244	3.44689e-5	0.0322851	7.57659e-4
chr7	93669993	93670077	8929519	0	-	0.5	(0.49,0.53]	chr7	681407	3	EXON_PSEUDO	EXON_PSEUDO	AC002075.4	ENSG00000237729.2	ENST00000425207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	37	2	3.11892	3.59417	4.06942	0.00398244	3.44689e-5	0.0322851	7.57659e-4
chr19	19121524	19121596	17502076	0	-	0.680556	(0.59,1]	chr19	1468661	1	CDS	CDS:EXON_MRNA	TMEM161A	ENSG00000064545.15	ENST00000162044.14:ENST00000450333.6:ENST00000587406.5:ENST00000587985.6:ENST00000589448.5:ENST00000587583.6:ENST00000587925.5:ENST00000587096.5:ENST00000591031.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	1.8502	3.5941	5.338	0.0334531	3.196e-4	0.140296	0.00457916
chr6	36968235	36968330	7683192	0	-	0.473684	(0.455,0.49]	chr6	589200	2	UTR3	UTR3:EXON_MRNA	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	3.0141	3.594085	4.17407	9.3076e-4	1.754e-5	0.0111917	4.38078e-4
chr1	23559126	23559226	896529	0	-	0.63	(0.59,1]	chr1	93161	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ID3	ENSG00000117318.9	ENST00000374561.6:ENST00000486541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	1.96265	3.59407	5.22549	0.0238491	5.13843e-4	0.112466	0.00665221
chr16	70532478	70532549	15729747	0	+	0.464789	(0.455,0.49]	chr16	1252903	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	4	61	2	3.3605	3.5939550000000002	3.82741	0.00147278	7.2352e-7	0.0157578	3.02956e-5
chr2	58251636	58251735	1830046	0	+	0.747475	(0.59,1]	chr2	174311	3	EXON_PSEUDO	EXON_PSEUDO	EIF3FP3	ENSG00000233426.3	ENST00000434851.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	186	2	3.42841	3.593935	3.75946	3.74944e-5	1.1997e-6	9.02149e-4	4.66408e-5
chr2	70289368	70289372	2724378	0	-	0	[0,0.29]	chr2	242740	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	3.28583	3.593795	3.90176	0.00977224	0.00346525	0.0611259	0.0293796
chr2	101892723	101892821	1959570	0	+	0.255102	[0,0.29]	chr2	186182	16	UTR3	UTR3:EXON_MRNA	MAP4K4	ENSG00000071054.16	ENST00000350878.8:ENST00000350198.8:ENST00000324219.8:ENST00000302217.9:ENST00000625522.2:ENST00000413150.6	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.28583	3.593795	3.90176	0.00977224	0.00346525	0.0611259	0.0293796
chr6	26171067	26171161	7101424	0	+	0.478723	(0.455,0.49]	chr6	542819	2	UTR3	UTR3:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.24913	3.593535	3.93794	0.00239443	7.43966e-5	0.0225356	0.00142165
chr12	67305800	67305899	12934064	0	+	0.40404	(0.39,0.42]	chr12	1008094	8	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.69374	3.59349	4.49324	0.00386013	0.00108192	0.0310764	0.0124943
chr8	58579708	58579794	9351248	0	+	0.406977	(0.39,0.42]	chr8	715154	2	CDS	CDS:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1:ENST00000447267.4:ENST00000523441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.69374	3.59349	4.49324	0.00386013	0.00108192	0.0310764	0.0124943
chr7	107195833	107195907	8455522	0	+	0.445946	(0.42,0.455]	chr7	645912	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000483809.1:ENST00000607681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.07474	3.5934600000000003	5.11218	0.0338882	6.01815e-5	0.139841	0.00130886
chr17	38921470	38921570	16218439	0	+	0.36	(0.33,0.36]	chr17	1310821	28	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	3.06149	3.593415	4.12534	2.51517e-4	6.92433e-7	0.00412169	2.92467e-5
chr9	131140548	131140629	10495765	0	+	0.382716	(0.36,0.39]	chr9	793234	1	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	3.10506	3.593305	4.08155	7.38785e-4	9.85897e-7	0.00924579	3.94225e-5
chr7	92126252	92126339	8922232	0	-	0.528736	(0.49,0.53]	chr7	680659	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.92917	3.593195	4.25722	4.42985e-5	1.00699e-5	9.29789e-4	3.03291e-4
chr10	74118069	74118169	11117648	0	+	0.49	(0.455,0.49]	chr10	846310	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	3.50048	3.5931100000000002	3.68574	5.99835e-5	4.36168e-7	0.00130886	1.97292e-5
chr6	38677294	38677383	7689643	0	-	0.359551	(0.33,0.36]	chr6	589573	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	182	2	3.44583	3.592785	3.73974	4.54896e-7	3.25812e-10	2.27746e-5	3.88482e-8
chr10	35501500	35501535	11009294	0	+	0.371429	(0.36,0.39]	chr10	837223	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	3.02397	3.5927	4.16143	0.00674398	0.00486719	0.0461258	0.0366328
chr12	115969018	115969097	13555037	0	-	0.379747	(0.36,0.39]	chr12	1067014	2	CDS	CDS:EXON_MRNA:INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000548784.2:ENST00000648916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	3.02397	3.5927	4.16143	0.00674398	0.00486719	0.0461258	0.0366328
chr4	169722405	169722502	5218215	0	+	0.360825	(0.36,0.39]	chr4	420942	25	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.02397	3.5927	4.16143	0.00674398	0.00486719	0.0461258	0.0366328
chr15	34342067	34342108	15204806	0	-	0.536585	(0.53,0.59]	chr15	1196853	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NOP10	ENSG00000182117.6	ENST00000328848.6:ENST00000557912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.18707	3.5926299999999998	3.99819	0.0111308	3.55681e-4	0.0665375	0.00539248
chr18	9936109	9936161	16755944	0	+	0.365385	(0.36,0.39]	chr18	1381778	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5:ENST00000583879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	3.38299	3.59262	3.80225	1.85308e-4	4.76625e-6	0.00322093	1.49327e-4
chr2	47690803	47690892	2633791	0	-	0.651685	(0.59,1]	chr2	237030	2	EXON_PSEUDO	EXON_PSEUDO	AC079250.1	ENSG00000230979.3	ENST00000456046.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	161	2	2.55335	3.59258	4.63181	1.90233e-4	4.23414e-6	0.00303096	1.4819e-4
chr7	50401621	50401720	8279147	0	+	0.373737	(0.36,0.39]	chr7	630737	11	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.48669	3.59252	3.69835	3.2708e-4	6.40815e-5	0.00502339	0.00125657
chr1	151401296	151401355	471587	0	+	0.525424	(0.49,0.53]	chr1	48194	2	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000290541.7:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1:ENST00000466425.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	90	2	3.29825	3.59226	3.88627	0.00019429700000000001	8.23116e-8	0.00332542	4.7302e-6
chr16	88651013	88651053	16074019	0	-	0.7	(0.59,1]	chr16	1291464	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000567174.5:ENST00000569359.5:ENST00000568278.1:ENST00000562209.1:ENST00000561972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	32	2	2.92097	3.5922549999999998	4.26354	0.0134233	0.0102634	0.0743429	0.0628742
chr1	16875481	16875581	74933	0	+	0.51	(0.49,0.53]	chr1	8645	15	INTRON	INTRON	CROCC:RP11-108M9.3	ENSG00000058453.17:ENSG00000228549.5	ENST00000466256.6:ENST00000660907.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr1	53210218	53210314	198421	0	+	0.5	(0.49,0.53]	chr1	25299	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	CPT2	ENSG00000157184.7	ENST00000636867.1:ENST00000637252.1:ENST00000636891.1:ENST00000636239.1:ENST00000636935.1:ENST00000635888.1:ENST00000635862.1:ENST00000371486.4:ENST00000638135.1:ENST00000637726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr1	53210698	53210793	198426	0	+	0.494737	(0.49,0.53]	chr1	25299	8	CDS	CDS:UTR3:EXON_MRNA:INTRON	CPT2	ENSG00000157184.7	ENST00000636867.1:ENST00000637252.1:ENST00000636891.1:ENST00000636239.1:ENST00000636935.1:ENST00000635888.1:ENST00000635862.1:ENST00000371486.4:ENST00000638135.1:ENST00000637726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr1	148538237	148538327	1282198	0	-	0.5	(0.49,0.53]	chr1	127065	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.6	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000581201.5:ENST00000614329.4:ENST00000616120.4:ENST00000621070.4:ENST00000611826.4:ENST00000620240.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr1	154415040	154415137	1303035	0	-	0.525773	(0.49,0.53]	chr1	131255	8	EXON_PSEUDO	EXON_PSEUDO	PSMD8P1	ENSG00000228264.1	ENST00000436275.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr11	14441349	14441431	11816907	0	+	0.52439	(0.49,0.53]	chr11	904791	2	EXON_PSEUDO	EXON_PSEUDO	RP11-140L24.3	ENSG00000255074.1	ENST00000534211.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr12	2720677	2720776	13172896	0	-	0.494949	(0.49,0.53]	chr12	1030572	140	INTRON	INTRON	ITFG2-AS1	ENSG00000256150.2	ENST00000636122.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr12	56314898	56314968	13350306	0	-	0.528571	(0.49,0.53]	chr12	1051112	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-977G19.10:CNPY2	ENSG00000144785.8:ENSG00000257727.6	ENST00000549318.5:ENST00000547423.5:ENST00000548360.1:ENST00000273308.9:ENST00000553191.1:ENST00000551475.5:ENST00000551286.1:ENST00000551720.5:ENST00000551276.1:ENST00000548013.5:ENST00000547570.5:ENST00000553164.1:ENST00000546388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr12	132531574	132531673	13162186	0	+	0.515152	(0.49,0.53]	chr12	1029070	32	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr15	54321472	54321565	15292390	0	-	0.505376	(0.49,0.53]	chr15	1207007	9	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P74	ENSG00000259550.2	ENST00000560782.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr15	100569727	100569824	15474151	0	-	0.515464	(0.49,0.53]	chr15	1223301	5	CDS	CDS:EXON_MRNA:INTRON	LINS1	ENSG00000140471.17	ENST00000560783.1:ENST00000314742.13:ENST00000559169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr16	69160355	69160408	15721795	0	+	0.509434	(0.49,0.53]	chr16	1251859	1	CDS	CDS:EXON_MRNA	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr17	8623146	8623246	16434499	0	-	0.51	(0.49,0.53]	chr17	1340821	1	CDS_START	CDS_START:CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000411957.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr17	29130495	29130591	16490297	0	-	0.5	(0.49,0.53]	chr17	1348831	16	INTRON	INTRON	MYO18A	ENSG00000196535.17	ENST00000527372.7:ENST00000531253.5:ENST00000628822.2:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr17	82936282	82936379	16387278	0	+	0.494845	(0.49,0.53]	chr17	1333167	31	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000683839.1:ENST00000682315.1:ENST00000576677.6:ENST00000574886.2:ENST00000577051.1:ENST00000575132.5:ENST00000576603.5:ENST00000573364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr18	21773623	21773675	16778560	0	+	0.5	(0.49,0.53]	chr18	1384119	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MIB1	ENSG00000101752.12	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr19	57291079	57291175	17405770	0	+	0.510417	(0.49,0.53]	chr19	1450090	5	CDS	CDS:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr2	9472917	9473017	1626155	0	+	0.53	(0.49,0.53]	chr2	161306	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CPSF3	ENSG00000119203.14	ENST00000238112.8:ENST00000460593.1:ENST00000489403.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr2	239916388	239916487	3244912	0	-	0.50505	(0.49,0.53]	chr2	285963	30	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr20	32195562	32195661	17941026	0	-	0.50505	(0.49,0.53]	chr20	1519244	32	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr20	47651177	47651276	17809145	0	+	0.50505	(0.49,0.53]	chr20	1506110	3	CDS	CDS:EXON_MRNA	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr22	35742804	35742903	18494480	0	-	0.525253	(0.49,0.53]	chr22	1577789	42	UTR3	UTR3:EXON_MRNA	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr3	52211282	52211371	3476761	0	+	0.52809	(0.49,0.53]	chr3	304089	1	CDS	CDS:EXON_MRNA	ALAS1	ENSG00000023330.15	ENST00000469224.5:ENST00000394965.6:ENST00000310271.6:ENST00000484952.6:ENST00000493402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr3	184303695	184303749	3949038	0	+	0.5	(0.49,0.53]	chr3	332319	2	CDS	CDS:EXON_MRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000460628.1:ENST00000466987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr5	205489	205583	6418863	0	-	0.510638	(0.49,0.53]	chr5	499868	2	CDS	CDS:EXON_MRNA	CCDC127	ENSG00000164366.4	ENST00000296824.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr5	72197214	72197313	6027767	0	+	0.515152	(0.49,0.53]	chr5	472560	35	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr5	133991077	133991154	6843463	0	-	0.506494	(0.49,0.53]	chr5	523597	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr5	138957029	138957129	6862842	0	-	0.5	(0.49,0.53]	chr5	525306	37	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000503732.1:ENST00000505945.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr6	41916829	41916929	7701809	0	-	0.53	(0.49,0.53]	chr6	590653	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-973N23.5:MED20	ENSG00000288721.1:ENSG00000124641.16	ENST00000684631.1:ENST00000682596.1:ENST00000683313.1:ENST00000265350.9:ENST00000467535.5:ENST00000482361.1:ENST00000409312.5:ENST00000394251.2:ENST00000409060.1:ENST00000434077.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr6	89747399	89747470	7839004	0	-	0.492958	(0.49,0.53]	chr6	600778	2	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr7	128321265	128321344	9058727	0	-	0.506329	(0.49,0.53]	chr7	691276	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chrX	48909926	48909981	19063575	0	-	0.527273	(0.49,0.53]	chrX	1620572	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7:ENST00000446885.1:ENST00000635238.1:ENST00000634665.1:ENST00000635015.1:ENST00000376512.2:ENST00000634461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chrX	53094570	53094666	19075154	0	-	0.510417	(0.49,0.53]	chrX	1622213	4	EXON_LNCRNA	EXON_LNCRNA	RP11-236P24.3	ENSG00000234019.1	ENST00000433646.1	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	3.44951	3.592225	3.73494	0.0405223	0.0189345	0.153343	0.0934721
chr5	111192588	111192678	6760667	0	-	0.4	(0.39,0.42]	chr5	519120	5	EXON_PSEUDO	EXON_PSEUDO	RPS3AP21	ENSG00000214784.4	ENST00000461022.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	92	2	3.10255	3.59206	4.08157	2.73081e-6	1.0443e-6	9.36806e-5	4.57959e-5
chr20	56601947	56602030	17835938	0	+	0.481928	(0.455,0.49]	chr20	1508087	4	EXON_PSEUDO	EXON_PSEUDO	RPS4XP3	ENSG00000214541.3	ENST00000398541.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	42	2	3.31171	3.5920199999999998	3.87233	1.87327e-4	1.08465e-4	0.00325006	0.00193256
chr1	88949090	88949183	1156484	0	-	0.44086	(0.42,0.455]	chr1	114039	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KYAT3	ENSG00000137944.18	ENST00000370491.7:ENST00000446900.6:ENST00000260508.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.94263	3.5919799999999995	4.24133	0.00766873	0.00326918	0.0503696	0.0282494
chr17	67345800	67345857	16652526	0	-	0.421053	(0.42,0.455]	chr17	1369555	2	CDS	CDS:UTR3:EXON_MRNA	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.94263	3.5919799999999995	4.24133	0.00766873	0.00326918	0.0503696	0.0282494
chr10	32009206	32009302	11441747	0	-	0.291667	(0.29,0.33]	chr10	872367	3	UTR3	UTR3:EXON_MRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.13212	3.591945	4.05177	0.00551048	3.72769e-5	0.0414592	8.08834e-4
chr2	113955622	113955706	2007102	0	+	0.452381	(0.42,0.455]	chr2	190794	1	CDS	CDS:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	2.83395	3.5919100000000004	4.34987	6.25227e-4	5.55486e-6	0.00830005	1.68903e-4
chr17	32745210	32745285	16502202	0	-	0.28	[0,0.29]	chr17	1350177	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000577252.5:ENST00000580538.5:ENST00000584232.5:ENST00000583611.5:ENST00000582751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	3.0735	3.5919	4.1103	0.00785095	0.00493104	0.0520241	0.0366648
chr17	76563699	76563796	16359186	0	+	0.123711	[0,0.29]	chr17	1328581	7	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	3.0735	3.5919	4.1103	0.00785095	0.00493104	0.0520241	0.0366648
chr11	74254504	74254603	12016988	0	+	0.535354	(0.53,0.59]	chr11	926524	11	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	74	2	2.2732	3.59188	4.91056	0.00369236	1.08461e-7	0.030936	5.98453e-6
chr15	66490707	66490800	14983870	0	+	0.333333	(0.33,0.36]	chr15	1177919	2	UTR3	UTR3:EXON_MRNA	MAP2K1	ENSG00000169032.10	ENST00000307102.10:ENST00000566326.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.97606	3.5918099999999997	4.20756	0.00871774	0.00386591	0.0558165	0.0310764
chrX	135964332	135964431	19248576	0	-	0.343434	(0.33,0.36]	chrX	1635139	39	UTR3	UTR3:EXON_MRNA	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000681201.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.97606	3.5918099999999997	4.20756	0.00871774	0.00386591	0.0558165	0.0310764
chr17	17383921	17384012	16464548	0	-	0.659341	(0.59,1]	chr17	1344546	7	EXON_PSEUDO	EXON_PSEUDO	RPL13P12	ENSG00000215030.5	ENST00000392730.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	171	2	3.2994	3.59178	3.88416	1.46381e-5	9.63942e-6	4.12451e-4	2.67863e-4
chr10	124408750	124408821	11729376	0	-	0.309859	(0.29,0.33]	chr10	895088	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000476917.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	3.23505	3.5916050000000004	3.94816	1.0759e-4	2.57518e-7	0.00207122	1.25763e-5
chr10	75220818	75220894	11126507	0	+	0.526316	(0.49,0.53]	chr10	846657	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	3.41615	3.59159	3.76703	9.74162e-5	1.02216e-5	0.00193088	2.82175e-4
chr1	55063484	55063584	203848	0	+	0.69	(0.59,1]	chr1	26181	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	101	2	2.75686	3.5913950000000003	4.42593	0.00108088	1.38583e-5	0.0118355	3.94563e-4
chr7	36453394	36453493	8230969	0	+	0.323232	(0.29,0.33]	chr7	627574	9	UTR3	UTR3:EXON_MRNA	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000491782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	2.0986	3.5909500000000003	5.0833	0.00919301	4.57622e-5	0.0581197	0.00105479
chr6	27133267	27133364	7104127	0	+	0.628866	(0.59,1]	chr6	543283	2	CDS	CDS:EXON_MRNA	H2AC11	ENSG00000196787.3	ENST00000359193.3	protein_coding	protein_coding	protein_coding	protein_coding	11	278	2	3.47863	3.590735	3.70284	1.46815e-6	8.63265e-7	5.53383e-5	3.91474e-5
chr19	38815856	38815931	17560841	0	-	0.613333	(0.59,1]	chr19	1475027	1	CDS	CDS:EXON_MRNA	ECH1	ENSG00000104823.9	ENST00000221418.9:ENST00000601333.1:ENST00000594391.5:ENST00000601778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.5215	3.5905899999999997	4.65968	0.032241	0.00413632	0.135671	0.0324998
chr22	39960114	39960175	18372663	0	+	0.606557	(0.59,1]	chr22	1563496	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	31	2	2.5215	3.5905899999999997	4.65968	0.032241	0.00413632	0.135671	0.0324998
chr12	53672614	53672645	13341043	0	-	0.612903	(0.59,1]	chr12	1049287	1	CDS	CDS:UTR5:EXON_MRNA	ATP5MC2	ENSG00000135390.21	ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	148	2	3.12211	3.5905400000000003	4.05897	7.51607e-4	6.09906e-7	0.00938882	2.62406e-5
chr17	42498982	42499042	16228580	0	+	0.416667	(0.39,0.42]	chr17	1312954	2	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.54172	3.590275	4.63883	0.00247353	5.68159e-4	0.0223024	0.0077844
chr11	34471367	34471433	11906344	0	+	0.515152	(0.49,0.53]	chr11	909836	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000534710.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	3.14975	3.590045	4.03034	8.97896e-5	4.26396e-5	0.0016645	9.97006e-4
chr17	41867610	41867709	16543744	0	-	0.484848	(0.455,0.49]	chr17	1356443	8	UTR3	UTR3:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.40664	3.5899099999999997	4.77318	0.0123662	4.7888e-4	0.0705839	0.00628636
chr9	100007633	100007689	10772787	0	-	0.375	(0.36,0.39]	chr9	815439	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	3.48145	3.5899	3.69835	3.2708e-4	2.22295e-6	0.00502339	7.83144e-5
chr12	56133780	56133873	12898307	0	+	0.55914	(0.53,0.59]	chr12	1004250	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.17542	3.589675	4.00393	0.0108084	3.78824e-4	0.064368	0.00525548
chr1	167790419	167790519	524607	0	+	0.6	(0.59,1]	chr1	56285	26	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	1	32	2	3.06258	3.58965	4.11672	0.0222273	0.00616167	0.105595	0.0438642
chr19	16528167	16528255	17491327	0	-	0.636364	(0.59,1]	chr19	1466454	2	CDS	CDS:EXON_MRNA:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	32	2	3.06258	3.58965	4.11672	0.0222273	0.00616167	0.105595	0.0438642
chr19	49492101	49492197	17370772	0	+	0.510417	(0.49,0.53]	chr19	1443140	4	UTR3	UTR3:EXON_MRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000677048.1:ENST00000676556.1:ENST00000678187.1:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	394	2	3.42261	3.5894950000000003	3.75638	1.12144e-8	5.09803e-11	9.39209e-7	7.4789e-9
chr1	433646	433746	821965	0	-	0.57	(0.53,0.59]	chr1	81335	534	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455207.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	22	2	3.02054	3.589295	4.15805	0.00680952	0.00577011	0.0468196	0.0426551
chr17	8269164	8269264	16109442	0	+	0.59	(0.53,0.59]	chr17	1298323	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PFAS	ENSG00000178921.14	ENST00000580356.5:ENST00000314666.11:ENST00000546020.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.02054	3.589295	4.15805	0.00680952	0.00577011	0.0468196	0.0426551
chr17	42585193	42585262	16548581	0	-	0.550725	(0.53,0.59]	chr17	1357450	2	CDS	CDS:UTR3:EXON_MRNA	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10:ENST00000585894.5:ENST00000586870.5:ENST00000589007.5:ENST00000585726.5:ENST00000590035.5:ENST00000591547.5:ENST00000593251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.02054	3.589295	4.15805	0.00680952	0.00577011	0.0468196	0.0426551
chr3	48688532	48688612	4169430	0	-	0.5625	(0.53,0.59]	chr3	349912	3	CDS	CDS:EXON_MRNA	IP6K2	ENSG00000068745.15	ENST00000328631.10	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.02054	3.589295	4.15805	0.00680952	0.00577011	0.0468196	0.0426551
chr16	24215310	24215409	15599240	0	+	0.262626	[0,0.29]	chr16	1236920	6	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	10	77	2	3.16969	3.58928	4.00887	1.59925e-6	3.91893e-7	5.93501e-5	2.01022e-5
chr1	151167325	151167414	470672	0	+	0.550562	(0.53,0.59]	chr1	47947	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCNM1	ENSG00000163156.12	ENST00000602841.5:ENST00000461862.5:ENST00000368902.1:ENST00000368905.9:ENST00000497147.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chr10	3119967	3120044	10903712	0	+	0.584416	(0.53,0.59]	chr10	829761	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chr11	4091892	4091986	11773992	0	+	0.531915	(0.53,0.59]	chr11	900920	2	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000533977.5:ENST00000526156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chr12	120149921	120149982	13579234	0	-	0.57377	(0.53,0.59]	chr12	1068628	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chr17	58347187	58347241	16612617	0	-	0.537037	(0.53,0.59]	chr17	1364740	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUPT4H1:RP5-1171I10.8	ENSG00000213246.7:ENSG00000285897.1	ENST00000581166.5:ENST00000225504.8:ENST00000648873.1:ENST00000577396.5:ENST00000581204.1:ENST00000581540.5:ENST00000580947.1:ENST00000579289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chr18	12326030	12326130	16762282	0	+	0.54	(0.53,0.59]	chr18	1382539	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000590967.5:ENST00000591208.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chrX	48906325	48906425	19063536	0	-	0.57	(0.53,0.59]	chrX	1620562	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7:ENST00000446885.1:ENST00000635238.1:ENST00000634665.1:ENST00000635015.1:ENST00000376512.2:ENST00000634461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.515	3.58924	4.66348	0.0292633	0.00107799	0.129773	0.0118238
chr6	31795217	31795311	7662585	0	-	0.489362	(0.455,0.49]	chr6	585346	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000440048.1	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.10658	3.58915	5.07172	0.00204602	8.3067e-5	0.0193107	0.00171126
chr10	22537004	22537102	11411120	0	-	0.479592	(0.455,0.49]	chr10	869854	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000474335.1:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.30139	3.5888600000000004	4.87633	0.0530131	2.95855e-4	0.195536	0.00432147
chr10	72096589	72096682	11563913	0	-	0.462366	(0.455,0.49]	chr10	880108	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000534259.1:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.30139	3.5888600000000004	4.87633	0.0530131	2.95855e-4	0.195536	0.00432147
chr2	178587705	178587800	3040778	0	-	0.484211	(0.455,0.49]	chr2	269150	3	CDS	CDS:EXON_MRNA	TTN	ENSG00000155657.28	ENST00000460472.6:ENST00000589042.5:ENST00000591111.5:ENST00000342992.10:ENST00000359218.10:ENST00000342175.11	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.30139	3.5888600000000004	4.87633	0.0530131	2.95855e-4	0.195536	0.00432147
chr6	132816732	132816801	7406832	0	+	0.347826	(0.33,0.36]	chr6	567798	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	3.57559	3.588785	3.60198	0.0262108	6.01238e-4	0.117079	0.00811676
chrX	119468421	119468443	18841497	0	+	0.590909	(0.59,1]	chrX	1605547	1	EXON_LNCRNA	EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000475354.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	94	2	3.23348	3.5887700000000002	3.94406	0.00352837	8.69349e-6	0.0298518	2.45289e-4
chr17	7580525	7580585	16105719	0	+	0.55	(0.53,0.59]	chr17	1296988	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584180.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	40	2	3.30943	3.5887599999999997	3.86809	0.0018255	1.18973e-4	0.0183913	0.00207755
chr22	42618902	42618998	18524331	0	-	0.572917	(0.53,0.59]	chr22	1581940	12	UTR3	UTR3:EXON_MRNA	CYB5R3	ENSG00000100243.21	ENST00000352397.10:ENST00000361740.8:ENST00000407623.7:ENST00000407332.5:ENST00000470741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	3.30943	3.5887599999999997	3.86809	0.0018255	1.18973e-4	0.0183913	0.00207755
chrX	16852811	16852875	18971768	0	-	0.578125	(0.53,0.59]	chrX	1615450	2	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000481586.1:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	3.30943	3.5887599999999997	3.86809	0.0018255	1.18973e-4	0.0183913	0.00207755
chr12	53462492	53462511	12886557	0	+	0.736842	(0.59,1]	chr12	1002437	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	33	2	3.19	3.588755	3.98751	0.0301044	0.0039188	0.129773	0.0314356
chr9	35699355	35699408	10639460	0	-	0.603774	(0.59,1]	chr9	804982	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	3.19	3.588755	3.98751	0.0301044	0.0039188	0.129773	0.0314356
chr12	6531864	6531955	12713573	0	+	0.296703	(0.29,0.33]	chr12	986632	6	UTR3	UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.92065	3.588625	4.2566	0.0117842	0.00303129	0.0686664	0.0257942
chr3	158691858	158691956	3841988	0	+	0.295918	(0.29,0.33]	chr3	327040	5	UTR3	UTR3:EXON_MRNA	GFM1	ENSG00000168827.15	ENST00000486715.6:ENST00000478254.5:ENST00000264263.9:ENST00000472383.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.92065	3.588625	4.2566	0.0117842	0.00303129	0.0686664	0.0257942
chr7	75186052	75186148	8857916	0	-	0.302083	(0.29,0.33]	chr7	676725	8	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4:ENST00000621948.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	14	2	2.92065	3.588625	4.2566	0.0117842	0.00303129	0.0686664	0.0257942
chr9	112685515	112685614	10804958	0	-	0.323232	(0.29,0.33]	chr9	818555	17	UTR3	UTR3:EXON_MRNA	INIP	ENSG00000148153.14	ENST00000374242.9	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.92065	3.588625	4.2566	0.0117842	0.00303129	0.0686664	0.0257942
chr2	177231539	177231633	3033065	0	-	0.446809	(0.42,0.455]	chr2	268539	8	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NFE2L2	ENSG00000116044.16	ENST00000458603.1:ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.46349	3.58857	3.71365	9.0025e-4	2.63375e-4	0.0102618	0.00427022
chr6	26197006	26197073	7647199	0	-	0.552239	(0.53,0.59]	chr6	582541	2	CDS	CDS:UTR3:EXON_MRNA	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	81	2	3.53663	3.588475	3.64032	4.77731e-5	3.4163e-6	0.00109049	1.12474e-4
chr16	88803788	88803831	15807262	0	+	0.651163	(0.59,1]	chr16	1258104	1	UTR5	UTR5:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9	protein_coding	protein_coding	protein_coding	protein_coding	11	229	2	2.98175	3.58844	4.19513	9.98246e-6	2.25552e-6	2.76208e-4	8.7552e-5
chr5	138187095	138187167	6243591	0	+	0.513889	(0.49,0.53]	chr5	486390	1	CDS	CDS:UTR3:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5:ENST00000502338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.4415	3.5882199999999997	3.73494	0.0189345	9.98297e-4	0.0934721	0.0111246
chr1	55063368	55063426	203846	0	+	0.706897	(0.59,1]	chr1	26180	1	CDS	CDS:UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	100	2	2.91668	3.58817	4.25966	5.47942e-4	2.95373e-5	0.00756447	6.69635e-4
chr6	27808502	27808602	7105130	0	+	0.62	(0.59,1]	chr6	543452	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AC13	ENSG00000196747.4	ENST00000358739.4	protein_coding	protein_coding	protein_coding	protein_coding	17	429	2	3.19495	3.588025	3.9811	3.08409e-6	1.18366e-8	1.14542e-4	8.95008e-7
chr4	143880509	143880609	5696020	0	-	0.42	(0.39,0.42]	chr4	451455	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.68267	3.587955	4.49324	0.00125229	0.00108192	0.0133064	0.0124943
chr2	152687486	152687586	2944381	0	-	0.31	(0.29,0.33]	chr2	261638	58	INTRON	INTRON	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000354363.11:ENST00000545856.7:ENST00000493468.7:ENST00000448428.2:ENST00000467114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.9319	3.587885	4.24387	0.00263476	0.00145571	0.0239118	0.0148357
chrX	30829632	30829732	19012164	0	-	0.36	(0.33,0.36]	chrX	1617544	23	UTR3	UTR3:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.00765	3.587815	5.16798	0.0287001	4.80331e-5	0.128757	9.91058e-4
chr1	161863227	161863327	502855	0	+	0.4	(0.39,0.42]	chr1	54567	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.81106	3.5877350000000003	4.36441	6.4431e-4	4.74002e-6	0.00799617	1.63674e-4
chr10	70883597	70883685	11562565	0	-	0.420455	(0.42,0.455]	chr10	879859	2	UTR3	UTR3:EXON_MRNA:INTRON	PCBD1	ENSG00000166228.9	ENST00000493961.5:ENST00000299299.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	77	2	3.54898	3.587665	3.62635	2.72662e-5	1.34101e-6	6.94447e-4	5.13503e-5
chr5	69334008	69334088	6020179	0	+	0.65	(0.59,1]	chr5	471413	2	EXON_PSEUDO	EXON_PSEUDO	CHCHD2P2	ENSG00000215006.4	ENST00000503744.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	63	2	3.39292	3.5874	3.78188	0.00192565	3.33896e-4	0.0191769	0.00472923
chr7	103472250	103472343	8962949	0	-	0.27957	[0,0.29]	chr7	686032	6	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.25155	3.58738	4.92321	0.00495706	1.17014e-4	0.0368301	0.00222617
chr22	31684928	31685028	18474162	0	-	0.44	(0.42,0.455]	chr22	1576813	37	UTR3	UTR3:EXON_MRNA:INTRON	PRR14L	ENSG00000183530.14	ENST00000330495.8:ENST00000327423.11:ENST00000432485.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	3.54838	3.587365	3.62635	5.9986e-4	2.72662e-5	0.0075062	6.94447e-4
chr22	19962676	19962776	18296454	0	+	0.63	(0.59,1]	chr22	1552989	1	CDS_START	CDS_START:CDS:EXON_MRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000678240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	366	2	1.93246	3.5873399999999998	5.24222	0.00778774	1.52915e-11	0.0517826	2.55138e-9
chr12	118027952	118028030	13108783	0	+	0.410256	(0.39,0.42]	chr12	1023075	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.49701	3.5873299999999997	4.67765	0.0339607	7.04737e-4	0.141431	0.00848325
chr2	62532868	62532963	2692483	0	-	0.410526	(0.39,0.42]	chr2	240684	4	EXON_PSEUDO	EXON_PSEUDO	RPL21P37	ENSG00000229503.1	ENST00000454675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	2.49701	3.5873299999999997	4.67765	0.0339607	7.04737e-4	0.141431	0.00848325
chr2	196771842	196771938	3101401	0	-	0.40625	(0.39,0.42]	chr2	273986	2	CDS	CDS:UTR3:EXON_MRNA	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.49701	3.5873299999999997	4.67765	0.0339607	7.04737e-4	0.141431	0.00848325
chr5	97024520	97024601	6118832	0	+	0.419753	(0.39,0.42]	chr5	478851	1	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.49701	3.5873299999999997	4.67765	0.0339607	7.04737e-4	0.141431	0.00848325
chr9	113292247	113292345	10425346	0	+	0.418367	(0.39,0.42]	chr9	784807	7	UTR3	UTR3:EXON_MRNA	PRPF4	ENSG00000136875.13	ENST00000374199.9:ENST00000374198.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.49701	3.5873299999999997	4.67765	0.0339607	7.04737e-4	0.141431	0.00848325
chr10	123160406	123160485	11299021	0	+	0.556962	(0.53,0.59]	chr10	861572	1	CDS	CDS:EXON_MRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	1.90953	3.5872200000000003	5.26491	0.0517711	6.31437e-5	0.193577	0.00124286
chr12	57280357	57280443	13354988	0	-	0.546512	(0.53,0.59]	chr12	1052542	1	CDS	CDS:UTR3:EXON_MRNA	RP11-123K3.4:R3HDM2	ENSG00000258830.1:ENSG00000179912.20	ENST00000548184.1:ENST00000393811.6:ENST00000347140.7:ENST00000402412.5:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000429355.6:ENST00000403821.6:ENST00000547262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	1.90953	3.5872200000000003	5.26491	0.0517711	6.31437e-5	0.193577	0.00124286
chr17	48057412	48057481	16253347	0	+	0.492754	(0.49,0.53]	chr17	1317125	2	CDS	CDS:UTR5:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000583210.5:ENST00000577411.5:ENST00000584634.5:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000577431.1:ENST00000580037.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.43922	3.5870800000000003	3.73494	0.0189345	1.33812e-5	0.0934721	3.50276e-4
chr6	28838420	28838496	7652611	0	-	0.513158	(0.49,0.53]	chr6	583166	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XXbac-BPG308K3.5	ENSG00000225173.1	ENST00000457253.1	lncRNA	lncRNA	lncRNA	lncRNA	180	2110	2	3.50437	3.587005	3.66964	6.2339e-12	2.46314e-12	1.24483e-9	5.02835e-10
chr12	24817408	24817508	13255730	0	-	0.43	(0.42,0.455]	chr12	1038842	75	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5	protein_coding	protein_coding	protein_coding	protein_coding	9	113	2	3.10078	3.586965	4.07315	1.38541e-5	1.50495e-8	3.94563e-4	1.10375e-6
chr17	76159413	76159493	16687778	0	-	0.575	(0.53,0.59]	chr17	1374393	2	CDS	CDS:EXON_MRNA	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.50447	3.5869150000000003	4.66936	0.0301162	0.00103174	0.130016	0.0121443
chr6	52403409	52403505	7177644	0	+	0.5625	(0.53,0.59]	chr6	555098	2	CDS	CDS:EXON_MRNA:INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.50447	3.5869150000000003	4.66936	0.0301162	0.00103174	0.130016	0.0121443
chr8	38145221	38145315	9794950	0	-	0.574468	(0.53,0.59]	chr8	740489	1	CDS	CDS:EXON_MRNA:INTRON	STAR	ENSG00000147465.12	ENST00000276449.9:ENST00000520114.1:ENST00000522050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.50447	3.5869150000000003	4.66936	0.0301162	0.00103174	0.130016	0.0121443
chr1	32330837	32330908	128502	0	+	0.549296	(0.53,0.59]	chr1	15937	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5:ENST00000484305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr10	80516263	80516323	11152007	0	+	0.566667	(0.53,0.59]	chr10	847921	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr16	22379787	22379887	15891691	0	-	0.56	(0.53,0.59]	chr16	1271788	48	INTRON	INTRON	CDR2	ENSG00000140743.8	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr16	70482728	70482821	15998512	0	-	0.55914	(0.53,0.59]	chr16	1284833	1	CDS	CDS:UTR3:EXON_MRNA	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000526700.5:ENST00000565715.1:ENST00000564315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr17	27561845	27561943	16172186	0	+	0.55102	(0.53,0.59]	chr17	1304588	10	INTRON	INTRON	KSR1	ENSG00000141068.14	ENST00000644974.1:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1:ENST00000398985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr18	260717	260754	16971192	0	-	0.540541	(0.53,0.59]	chr18	1395841	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	THOC1	ENSG00000079134.12	ENST00000261600.11:ENST00000579232.5:ENST00000580038.5:ENST00000578529.5:ENST00000631280.2:ENST00000616322.4:ENST00000621904.4:ENST00000582313.5:ENST00000581269.5:ENST00000581116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr4	887264	887363	5276465	0	-	0.585859	(0.53,0.59]	chr4	424433	16	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000618573.4:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.0099	3.586865	4.16383	0.00659193	0.00600486	0.0454205	0.042887
chr12	98533390	98533484	13036711	0	+	0.457447	(0.455,0.49]	chr12	1014954	7	CDS	CDS:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.66563	3.58684	4.50805	0.0043075	0.00122223	0.0334284	0.0135383
chr6	159755876	159755965	7526756	0	+	0.235955	[0,0.29]	chr6	574503	4	UTR3	UTR3:EXON_MRNA	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000621533.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.47088	3.5867	3.70252	0.0015572	2.87026e-4	0.0165415	0.00422471
chr7	139423084	139423177	8566315	0	+	0.27957	[0,0.29]	chr7	653683	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	3.47088	3.5867	3.70252	0.0015572	2.87026e-4	0.0165415	0.00422471
chr12	46188870	46188969	13313437	0	-	0.454545	(0.42,0.455]	chr12	1043464	60	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	3.08182	3.586685	4.09155	6.80627e-4	2.98142e-5	0.00876781	6.7355e-4
chr16	71916551	71916642	15733792	0	+	0.56044	(0.53,0.59]	chr16	1253404	2	CDS	CDS:EXON_MRNA:INTRON	IST1	ENSG00000182149.21	ENST00000568581.5:ENST00000540296.5:ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1:ENST00000545518.1:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	2.504	3.5866800000000003	4.66936	0.00279409	0.00103174	0.0241702	0.0121443
chr12	123757932	123758032	13128626	0	+	0.39	(0.36,0.39]	chr12	1026167	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ATP6V0A2	ENSG00000185344.15	ENST00000330342.8:ENST00000675344.1:ENST00000534943.5:ENST00000544833.1:ENST00000543687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.93136	3.5866499999999997	4.24194	0.00811967	0.00276729	0.0528637	0.0247437
chr17	57841182	57841260	16610273	0	-	0.384615	(0.36,0.39]	chr17	1364265	1	CDS	CDS:EXON_MRNA	MRPS23	ENSG00000181610.13	ENST00000313608.13:ENST00000578444.1:ENST00000579380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.93136	3.5866499999999997	4.24194	0.00811967	0.00276729	0.0528637	0.0247437
chr8	9676669	9676768	9191889	0	+	0.383838	(0.36,0.39]	chr8	702187	51	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000521039.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	2.93136	3.5866499999999997	4.24194	0.00811967	0.00276729	0.0528637	0.0247437
chr17	67726553	67726648	16331886	0	+	0.515789	(0.49,0.53]	chr17	1324848	2	CDS	CDS:UTR3:EXON_MRNA	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000580833.1:ENST00000580914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.38204	3.58645	4.79086	0.0049129	4.20783e-4	0.0366648	0.00611538
chr12	131995555	131995654	13160066	0	+	0.484848	(0.455,0.49]	chr12	1028644	2	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.53286	3.5863199999999997	4.63978	0.0282409	6.94032e-4	0.124386	0.00876781
chr11	46428751	46428851	12381379	0	-	0.6	(0.59,1]	chr11	955794	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	AMBRA1:RP11-425L10.1	ENSG00000110497.15:ENSG00000244313.3	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000467930.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	11	255	2	3.22382	3.586315	3.94881	2.90785e-6	1.60139e-6	9.83231e-5	6.53758e-5
chr5	154819067	154819163	6929602	0	-	0.34375	(0.33,0.36]	chr5	530568	7	UTR3	UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	3.52547	3.58612	3.64677	7.60232e-5	2.94381e-6	0.00159574	9.91257e-5
chr7	128858898	128858992	8522575	0	+	0.56383	(0.53,0.59]	chr7	650485	5	UTR3	UTR3:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.97928	3.58608	5.19288	0.0218546	9.22873e-5	0.104785	0.0016906
chr11	130123695	130123779	12206916	0	+	0.452381	(0.42,0.455]	chr11	942028	2	CDS	CDS:EXON_MRNA:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	3.4231	3.585845	3.74859	0.00112541	1.15347e-5	0.0128481	3.09736e-4
chr12	98533863	98533958	13036716	0	+	0.442105	(0.42,0.455]	chr12	1014954	12	CDS	CDS:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	3.54838	3.585765	3.62315	5.9986e-4	4.234e-4	0.0075062	0.00613535
chr16	56476704	56476804	15679000	0	+	0.35	(0.33,0.36]	chr16	1246383	6	UTR3	UTR3:EXON_MRNA	OGFOD1	ENSG00000087263.17	ENST00000336111.9:ENST00000566157.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.56949	3.585735	3.60198	6.01238e-4	5.48184e-4	0.00811676	0.00697082
chr2	73243068	73243134	1885399	0	+	0.545455	(0.53,0.59]	chr2	178541	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCT7	ENSG00000135624.16	ENST00000471927.5:ENST00000469844.5:ENST00000492253.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5:ENST00000258091.10:ENST00000398422.2:ENST00000399032.2:ENST00000409924.7:ENST00000480489.5:ENST00000473786.5:ENST00000482064.1:ENST00000626868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	102	2	3.00086	3.5856950000000003	4.17053	2.19267e-4	5.21295e-8	0.00365543	3.19969e-6
chr17	81932383	81932482	16710113	0	-	0.434343	(0.42,0.455]	chr17	1377895	1	UTR3	UTR3:EXON_MRNA	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.62346	3.5856900000000005	4.54792	0.00164881	9.66045e-4	0.0163523	0.0115185
chr3	195516796	195516895	4660207	0	-	0.353535	(0.33,0.36]	chr3	385038	25	UTR3	UTR3:EXON_MRNA	PPP1R2	ENSG00000184203.8	ENST00000618156.5:ENST00000418939.1:ENST00000460437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.64851	3.585585	4.52266	0.00492353	8.34989e-4	0.0366648	0.0102956
chr12	121430022	121430115	13585751	0	-	0.473118	(0.455,0.49]	chr12	1069655	11	UTR3	UTR3:EXON_MRNA	KDM2B	ENSG00000089094.19	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000542973.5:ENST00000543025.5:ENST00000536437.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.96925	3.5855699999999997	4.20189	0.00698725	0.00397662	0.0473262	0.0322851
chr13	42255872	42255954	13708536	0	+	0.463415	(0.455,0.49]	chr13	1080078	1	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	DGKH:FHP1	ENSG00000102780.17:ENSG00000234213.1	ENST00000498255.6:ENST00000442741.1	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	1	19	2	2.96925	3.5855699999999997	4.20189	0.00698725	0.00397662	0.0473262	0.0322851
chr2	8862655	8862722	2505778	0	-	0.477612	(0.455,0.49]	chr2	226089	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000471753.5:ENST00000486484.5:ENST00000494760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.96925	3.5855699999999997	4.20189	0.00698725	0.00397662	0.0473262	0.0322851
chr22	30976839	30976938	18344855	0	+	0.464646	(0.455,0.49]	chr22	1559168	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.96925	3.5855699999999997	4.20189	0.00698725	0.00397662	0.0473262	0.0322851
chr6	149410217	149410317	7481073	0	+	0.49	(0.455,0.49]	chr6	571665	6	UTR3	UTR3:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.50904	3.5855699999999997	4.6621	0.0310515	7.84472e-4	0.131262	0.00927662
chr8	86551045	86551100	9457628	0	+	0.472727	(0.455,0.49]	chr8	720275	1	CDS	CDS:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000517391.5:ENST00000517354.5:ENST00000614678.1:ENST00000523588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.96925	3.5855699999999997	4.20189	0.00698725	0.00397662	0.0473262	0.0322851
chrX	19361521	19361619	18604976	0	+	0.469388	(0.455,0.49]	chrX	1589061	20	UTR3	UTR3:EXON_MRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.96925	3.5855699999999997	4.20189	0.00698725	0.00397662	0.0473262	0.0322851
chrX	101357508	101357583	19151284	0	-	0.48	(0.455,0.49]	chrX	1628590	1	CDS	CDS:EXON_MRNA:INTRON	BTK	ENSG00000010671.16	ENST00000621635.4:ENST00000372880.5:ENST00000618050.4:ENST00000308731.8:ENST00000470329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.50904	3.5855699999999997	4.6621	0.0310515	7.84472e-4	0.131262	0.00927662
chr12	110347511	110347610	13085926	0	+	0.373737	(0.36,0.39]	chr12	1020556	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	3.58476	3.585565	3.58637	5.84377e-4	5.01956e-4	0.00793559	0.00653592
chr1	11023921	11024020	42060	0	+	0.393939	(0.39,0.42]	chr1	5026	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1:ENST00000480464.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.0503	3.58545	4.1206	0.00597537	0.00570576	0.0428562	0.0424438
chr11	70436408	70436496	12007141	0	+	0.409091	(0.39,0.42]	chr11	924902	1	UTR3	UTR3:EXON_MRNA	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.0503	3.58545	4.1206	0.00597537	0.00570576	0.0428562	0.0424438
chr6	166326131	166326167	8077613	0	-	0.416667	(0.39,0.42]	chr6	616663	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1:ENST00000494682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	3.0503	3.58545	4.1206	0.00597537	0.00570576	0.0428562	0.0424438
chr7	128589058	128589158	8520668	0	+	0.41	(0.39,0.42]	chr7	649971	86	INTRON	INTRON	RP11-274B21.1:RP11-274B21.14	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	17	2	3.0503	3.58545	4.1206	0.00597537	0.00570576	0.0428562	0.0424438
chr22	21763642	21763741	18442387	0	-	0.535354	(0.53,0.59]	chr22	1572508	41	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	13	195	2	3.34274	3.585425	3.82811	9.6458e-7	6.39565e-9	4.29767e-5	5.24401e-7
chr17	41690902	41690933	16226844	0	+	0.290323	(0.29,0.33]	chr17	1312505	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	38	2	3.17627	3.5854	3.99453	8.41464e-5	8.03892e-5	0.00167226	0.00158584
chr15	56096322	56096421	15299198	0	-	0.484848	(0.455,0.49]	chr15	1207656	30	CDS	CDS:EXON_MRNA	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000559847.7:ENST00000673948.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.9967	3.5853850000000005	4.17407	0.00650423	1.754e-5	0.0454205	4.38078e-4
chr11	27581773	27581867	11876585	0	+	0.414894	(0.39,0.42]	chr11	907991	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	BDNF-AS:RP11-587D21.1	ENSG00000245573.9:ENSG00000240036.4	ENST00000650864.1:ENST00000652063.1:ENST00000530686.6:ENST00000651944.1:ENST00000652663.1:ENST00000651193.1:ENST00000650954.2:ENST00000652516.1:ENST00000502161.7:ENST00000651756.1:ENST00000652325.1:ENST00000650880.1:ENST00000652138.1:ENST00000650862.1:ENST00000651437.1:ENST00000652594.1:ENST00000651103.1:ENST00000651905.1:ENST00000651238.1:ENST00000501663.3:ENST00000652754.1:ENST00000651742.1:ENST00000651796.1:ENST00000651707.1:ENST00000650815.1:ENST00000651635.1:ENST00000651152.1:ENST00000650855.1:ENST00000651990.1:ENST00000651218.1:ENST00000652212.1:ENST00000651252.2:ENST00000532965.5:ENST00000652244.1:ENST00000500662.7:ENST00000499568.3:ENST00000651997.1:ENST00000651592.1:ENST00000499008.8:ENST00000652574.1:ENST00000501176.7:ENST00000651926.2:ENST00000651264.1:ENST00000651026.1:ENST00000651123.1:ENST00000652133.1:ENST00000650703.1:ENST00000476147.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	70	2	3.14527	3.585175	4.02508	5.33048e-4	1.39129e-7	0.00742114	7.42875e-6
chr1	19235129	19235190	877307	0	-	0.606557	(0.59,1]	chr1	90483	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.42639	3.5850850000000003	4.74378	0.0409084	0.00312942	0.163285	0.0264364
chr4	7774477	7774576	4712703	0	+	0.676768	(0.59,1]	chr4	390956	24	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	1	31	2	2.42639	3.5850850000000003	4.74378	0.0409084	0.00312942	0.163285	0.0264364
chr9	136208916	136209006	10888820	0	-	0.633333	(0.59,1]	chr9	826968	2	CDS	CDS:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.42639	3.5850850000000003	4.74378	0.0409084	0.00312942	0.163285	0.0264364
chr18	211874	211972	16716211	0	+	0.306122	(0.29,0.33]	chr18	1379161	7	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8:ENST00000578942.5:ENST00000383589.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.24226	3.58499	4.92772	0.0306054	1.56621e-4	0.130226	0.00259991
chr6	119177397	119177494	7919302	0	-	0.298969	(0.29,0.33]	chr6	606471	3	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.92065	3.58499	4.24933	0.0117842	1.02924e-5	0.0686664	2.83837e-4
chr19	49909218	49909315	17608188	0	-	0.649485	(0.59,1]	chr19	1484492	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	IL4I1:NUP62	ENSG00000104951.16:ENSG00000213024.12	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	31	2	2.69477	3.58497	4.47517	0.020208	0.00735659	0.0978331	0.0491503
chr7	101217174	101217274	8953763	0	-	0.77	(0.59,1]	chr7	684727	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000478082.5:ENST00000414785.5:ENST00000456079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.69477	3.58497	4.47517	0.020208	0.00735659	0.0978331	0.0491503
chr11	125602302	125602363	12194337	0	+	0.409836	(0.39,0.42]	chr11	940722	1	CDS	CDS:UTR5:EXON_MRNA	STT3A	ENSG00000134910.14	ENST00000527606.5:ENST00000534472.5:ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525652.5:ENST00000529886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	3.05461	3.5849450000000003	4.11528	8.55091e-4	7.73976e-7	0.0105173	3.2172e-5
chr16	54852217	54852314	15953298	0	-	0.412371	(0.39,0.42]	chr16	1279489	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRNDE	ENSG00000245694.10	ENST00000637011.1:ENST00000613942.2:ENST00000658082.1	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	2.88836	3.5848199999999997	4.28128	0.0102432	0.00342611	0.062872	0.0283456
chr2	10427517	10427617	1631144	0	+	0.42	(0.39,0.42]	chr2	161840	8	UTR3	UTR3:EXON_MRNA	HPCAL1	ENSG00000115756.13	ENST00000307845.8:ENST00000381765.7:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.88836	3.5848199999999997	4.28128	0.0102432	0.00342611	0.062872	0.0283456
chr21	15878475	15878574	18052306	0	+	0.40404	(0.39,0.42]	chr21	1532047	1	UTR3	UTR3:EXON_MRNA	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000478932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.88836	3.5848199999999997	4.28128	0.0102432	0.00342611	0.062872	0.0283456
chr3	139383297	139383351	4479746	0	-	0.407407	(0.39,0.42]	chr3	372293	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5:ENST00000513274.5:ENST00000510491.5:ENST00000504295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.88836	3.5848199999999997	4.28128	0.0102432	0.00342611	0.062872	0.0283456
chr6	36489059	36489159	7134482	0	+	0.37	(0.36,0.39]	chr6	549568	20	UTR3	UTR3:EXON_MRNA	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000449081.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.20198	3.584575	3.96717	4.4092e-4	6.17763e-5	0.0062930699999999996	0.00122919
chr9	100057819	100057859	10773296	0	-	0.325	(0.29,0.33]	chr9	815475	1	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.80161	3.58453	4.36745	0.00415667	4.53307e-6	0.0325842	1.42727e-4
chr2	235597820	235597920	2444555	0	+	0.62	(0.59,1]	chr2	220921	729	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	3.23348	3.58437	3.93526	0.00352837	1.599e-4	0.0298518	0.00263454
chr2	235511854	235511954	2443693	0	+	0.41	(0.39,0.42]	chr2	220916	44	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.74243	3.584135	4.42584	0.00369167	0.00199429	0.030936	0.0189001
chr12	8943824	8943899	13197262	0	-	0.493333	(0.49,0.53]	chr12	1033935	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000536844.5:ENST00000543704.5:ENST00000537621.1:ENST00000543258.1:ENST00000543834.1:ENST00000544245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	2.74029	3.584095	4.4279	0.00196987	3.42161e-4	0.0193972	0.00482279
chr10	5785950	5786050	11352659	0	-	0.4	(0.39,0.42]	chr10	865759	2	CDS	CDS:EXON_MRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	3.3111	3.5839350000000003	3.85677	2.11919e-4	5.6465e-7	0.00357806	2.45601e-5
chrX	66198877	66198952	18717609	0	+	0.413333	(0.39,0.42]	chrX	1597002	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	3.3111	3.5839350000000003	3.85677	2.11919e-4	5.6465e-7	0.00357806	2.45601e-5
chr7	155308753	155308851	8632661	0	+	0.581633	(0.53,0.59]	chr7	659289	5	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	14	204	2	3.46294	3.5835850000000002	3.70423	1.64597e-7	1.99657e-8	9.72006e-6	1.4055e-6
chr1	149887623	149887719	1287113	0	-	0.572917	(0.53,0.59]	chr1	127858	1	CDS	CDS:EXON_MRNA	H2AC21	ENSG00000184270.6	ENST00000331128.6	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	3.38619	3.58351	3.78083	2.01278e-5	9.87441e-6	4.89797e-4	2.99e-4
chr16	24174517	24174580	15598823	0	+	0.428571	(0.42,0.455]	chr16	1236883	1	CDS	CDS:EXON_MRNA	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000472066.1:ENST00000463752.1:ENST00000487674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.03532	3.5835049999999997	5.13169	0.040947	8.60227e-5	0.163285	0.00160731
chr4	185161328	185161426	5832048	0	-	0.377551	(0.36,0.39]	chr4	458275	18	UTR3	UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.18642	3.583335	3.98025	0.00881716	0.00359152	0.0562439	0.0302391
chr17	76565251	76565348	16359202	0	+	0.391753	(0.39,0.42]	chr17	1328581	23	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000667091.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	1	19	2	3.22662	3.58329	3.93996	0.00841622	0.00257296	0.054565	0.0229363
chr3	50606581	50606674	4179535	0	-	0.408602	(0.39,0.42]	chr3	352073	2	UTR3	UTR3:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.22662	3.58329	3.93996	0.00841622	0.00257296	0.054565	0.0229363
chr4	143536602	143536678	5136443	0	+	0.394737	(0.39,0.42]	chr4	415869	3	CDS	CDS:EXON_MRNA	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.22662	3.58329	3.93996	0.00841622	0.00257296	0.054565	0.0229363
chr5	55405506	55405588	5973980	0	+	0.402439	(0.39,0.42]	chr5	468379	2	CDS	CDS:UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000518955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.22662	3.58329	3.93996	0.00841622	0.00257296	0.054565	0.0229363
chr7	106907981	106908081	8454038	0	+	0.4	(0.39,0.42]	chr7	645783	27	UTR3	UTR3:EXON_MRNA	PIK3CG	ENSG00000105851.11	ENST00000496166.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.22662	3.58329	3.93996	0.00841622	0.00257296	0.054565	0.0229363
chr17	46031085	46031182	16565487	0	-	0.57732000000000006	(0.53,0.59]	chr17	1360684	13	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1:ENST00000574963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.29789	3.5830599999999997	4.86823	0.00674768	4.35895e-4	0.0468196	0.00623608
chr20	45424221	45424321	17801702	0	+	0.59	(0.53,0.59]	chr20	1505117	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000639382.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000638927.1:ENST00000638277.1:ENST00000638241.1:ENST00000640253.1:ENST00000640638.1:ENST00000638691.1:ENST00000424705.2:ENST00000640123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.29789	3.5830599999999997	4.86823	0.00674768	4.35895e-4	0.0468196	0.00623608
chr1	21835591	21835637	890754	0	-	0.5	(0.49,0.53]	chr1	92282	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	3.57669	3.5829750000000002	3.58926	3.59064e-5	3.32125e-5	8.71318e-4	7.33555e-4
chr1	37556246	37556330	142351	0	+	0.547619	(0.53,0.59]	chr1	17757	1	EXON_PSEUDO	EXON_PSEUDO	RP3-423B22.5	ENSG00000237749.4	ENST00000423216.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	58	2	2.47	3.582725	4.69545	0.0089333	5.62788e-7	0.0567495	2.45035e-5
chr1	225417983	225418081	1528228	0	-	0.438776	(0.42,0.455]	chr1	152822	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000487054.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	94	2	3.31	3.58272	3.85544	2.7402e-6	5.8615e-7	1.02904e-4	2.5331e-5
chr17	59973629	59973729	16619885	0	-	0.5	(0.49,0.53]	chr17	1365721	90	INTRON	INTRON	TBC1D3P1-DHX40P1	ENSG00000267104.2	ENST00000587125.1	lncRNA	lncRNA	lncRNA	lncRNA	8	111	2	3.36911	3.582475	3.79584	2.16178e-5	4.71827e-8	5.71712e-4	2.9306e-6
chr11	63974780	63974794	11977973	0	+	0.5	(0.49,0.53]	chr11	918577	1	CDS	CDS:EXON_MRNA	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.48488	3.5823	4.67972	0.032052	6.94757e-4	0.133433	0.00876781
chr17	36496162	36496250	16521905	0	-	0.511364	(0.49,0.53]	chr17	1351831	7	UTR3	UTR3:EXON_MRNA	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000620567.1:ENST00000612392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.48488	3.5823	4.67972	0.032052	6.94757e-4	0.133433	0.00876781
chr16	85675114	85675213	15798104	0	+	0.363636	(0.36,0.39]	chr16	1257094	27	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	80	2	2.985	3.5822399999999996	4.17948	1.07075e-4	3.43356e-8	0.00206452	2.23074e-6
chr10	35525963	35525999	11009543	0	+	0.333333	(0.33,0.36]	chr10	837236	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000465416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.51887	3.5822000000000003	4.64553	0.0358636	6.69086e-4	0.147298	0.00820018
chr13	42320605	42320703	13709041	0	+	0.346939	(0.33,0.36]	chr13	1080151	15	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.51887	3.5822000000000003	4.64553	0.0358636	6.69086e-4	0.147298	0.00820018
chr2	181063072	181063164	2242313	0	+	0.347826	(0.33,0.36]	chr2	204439	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBE2E3	ENSG00000170035.16	ENST00000392415.6:ENST00000410062.9:ENST00000602710.5:ENST00000602762.5:ENST00000602837.1:ENST00000602970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.51887	3.5822000000000003	4.64553	0.0358636	6.69086e-4	0.147298	0.00820018
chr5	38953460	38953553	6544827	0	-	0.354839	(0.33,0.36]	chr5	507097	1	CDS	CDS:UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.51887	3.5822000000000003	4.64553	0.0358636	6.69086e-4	0.147298	0.00820018
chr15	72202536	72202620	15368022	0	-	0.595238	(0.59,1]	chr15	1214131	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000563986.1:ENST00000569857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	245	2	2.84406	3.58217	4.32028	1.62715e-4	2.23526e-8	0.00290162	1.55162e-6
chr17	40406886	40406942	16538945	0	-	0.410714	(0.39,0.42]	chr17	1354647	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	9	73	2	2.42256	3.582135	4.74171	2.22738e-4	2.6028e-7	0.00343375	1.4243e-5
chr1	26469427	26469526	109542	0	+	0.444444	(0.42,0.455]	chr1	13070	4	UTR3	UTR3:EXON_MRNA	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000360009.6:ENST00000431933.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.91373	3.582005	4.25028	0.00892357	0.00406761	0.0567495	0.032143
chr11	60898185	60898271	12402774	0	-	0.546512	(0.53,0.59]	chr11	959895	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000535326.1:ENST00000539960.1:ENST00000539180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	3.25217	3.5818950000000003	3.91162	4.79919e-5	4.03766e-6	0.00109351	1.29819e-4
chr13	39013285	39013384	13976231	0	-	0.494949	(0.49,0.53]	chr13	1096566	7	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.04107	3.58185	4.12263	0.00591451	0.00533879	0.0427941	0.0392268
chr14	21359483	21359546	14521213	0	-	0.492063	(0.49,0.53]	chr14	1137337	1	CDS	CDS:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.04107	3.58185	4.12263	0.00591451	0.00533879	0.0427941	0.0392268
chr7	152162876	152162971	9135181	0	-	0.515789	(0.49,0.53]	chr7	698363	9	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.04107	3.58185	4.12263	0.00591451	0.00533879	0.0427941	0.0392268
chr19	47064186	47064284	17595793	0	-	0.377551	(0.36,0.39]	chr19	1481489	1	UTR3	UTR3:EXON_MRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000601973.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.84089	3.58163	4.32237	0.0128123	0.00273222	0.0719798	0.0237575
chr2	195680906	195681006	2290374	0	+	0.39	(0.36,0.39]	chr2	207585	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.84089	3.58163	4.32237	0.0128123	0.00273222	0.0719798	0.0237575
chr4	138801016	138801116	5127214	0	+	0.39	(0.36,0.39]	chr4	415090	2	EXON_LNCRNA	EXON_LNCRNA	RP11-98O2.1	ENSG00000250501.3	ENST00000661669.1:ENST00000671501.1:ENST00000652863.1:ENST00000666159.1:ENST00000658543.1:ENST00000662769.1:ENST00000663319.1:ENST00000670746.1:ENST00000502606.1:ENST00000659480.1:ENST00000513400.2:ENST00000666313.1:ENST00000666509.1:ENST00000663892.1	lncRNA	lncRNA	lncRNA	lncRNA	1	16	2	2.84089	3.58163	4.32237	0.0128123	0.00273222	0.0719798	0.0237575
chr6	35470650	35470750	7130868	0	+	0.48	(0.455,0.49]	chr6	549025	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	RPL10A:MIR7111	ENSG00000198755.11:ENSG00000276712.1	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000619751.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	8	111	2	2.93103	3.58148	4.23193	1.15066e-4	3.25776e-9	0.00219531	2.9384e-7
chr4	48383646	48383715	4826430	0	+	0.405797	(0.39,0.42]	chr4	397722	1	CDS	CDS:UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	1.99911	3.58129	5.16347	0.0477207	6.48089e-5	0.17993	0.00126536
chr5	138573814	138573850	6862552	0	-	0.416667	(0.39,0.42]	chr5	525252	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.27012	3.58104	4.89196	0.00945558	2.62166e-4	0.0594007	0.0039188
chr2	216122061	216122157	2379867	0	+	0.541667	(0.53,0.59]	chr2	213780	1	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	2.8006	3.580965	4.36133	0.00233666	5.91026e-6	0.0221314	1.77972e-4
chr17	8475204	8475303	16432958	0	-	0.484848	(0.455,0.49]	chr17	1340589	11	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.65352	3.5807849999999997	4.50805	0.00143499	0.00122223	0.0147046	0.0135383
chr16	30724467	30724565	15631070	0	+	0.581633	(0.53,0.59]	chr16	1240525	10	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.55001	3.58067	3.61133	6.11776e-4	4.55298e-4	0.00818575	0.00608573
chr17	59693852	59693949	16295596	0	+	0.43299	(0.42,0.455]	chr17	1321774	1	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000579456.5:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	150	2	3.3421	3.580545	3.81899	2.11287e-6	4.83442e-9	8.25826e-5	4.12233e-7
chr1	192716553	192716653	630836	0	+	0.41	(0.39,0.42]	chr1	64057	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	MIR4426:RPS27AP5	ENSG00000283795.1:ENSG00000231767.4	ENST00000640330.1:ENST00000647225.1:ENST00000443181.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	4	57	2	2.149	3.580405	5.01181	0.0149155	3.28242e-8	0.0812412	2.15416e-6
chr6	85677094	85677192	7826450	0	-	0.377551	(0.36,0.39]	chr6	599650	46	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000624295.3:ENST00000658871.1:ENST00000453754.5:ENST00000625175.3:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000623267.3	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	9	107	2	2.8201	3.580225	4.34035	1.26337e-4	9.79503e-10	0.00239741	1.02993e-7
chr15	43988960	43989059	15251547	0	-	0.373737	(0.36,0.39]	chr15	1202413	643	INTRON	INTRON	FRMD5	ENSG00000171877.21	ENST00000417257.6:ENST00000402883.5:ENST00000421674.5:ENST00000458630.5:ENST00000484674.5:ENST00000451277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	88	2	3.06725	3.58007	4.09289	2.06648e-4	1.09599e-8	0.00350209	8.36696e-7
chr2	53920960	53921032	2664686	0	-	0.416667	(0.39,0.42]	chr2	238268	2	CDS	CDS:UTR3:EXON_MRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.62131	3.57995	4.53859	0.00609677	1.40716e-6	0.0439136	5.32869e-5
chr1	151267172	151267243	471399	0	+	0.549296	(0.53,0.59]	chr1	48116	1	CDS	CDS:UTR3:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000476855.5:ENST00000445776.1:ENST00000427779.5:ENST00000453615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	3.33569	3.57988	3.82407	0.0179666	1.57373e-4	0.0918323	0.00260854
chr10	22329833	22329930	10962215	0	+	0.402062	(0.39,0.42]	chr10	834314	4	UTR3	UTR3:EXON_MRNA	BMI1	ENSG00000168283.14	ENST00000376663.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.85416	3.5797299999999996	4.3053	0.00225069	7.30538e-6	0.021386	2.13219e-4
chr8	116644905	116645005	10033904	0	-	0.37	(0.36,0.39]	chr8	755319	29	UTR3	UTR3:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	3.41656	3.579695	3.74283	1.50915e-5	3.68577e-6	4.23797e-4	1.20088e-4
chrX	48523938	48524005	18691805	0	+	0.597015	(0.59,1]	chrX	1594131	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	3.09455	3.57956	4.06457	7.92671e-4	9.48087e-5	0.00933379	0.00188744
chr21	33903525	33903590	18224254	0	-	0.476923	(0.455,0.49]	chr21	1546638	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	100	2	3.20627	3.5793850000000003	3.9525	2.64659e-6	1.18324e-6	9.98197e-5	4.60726e-5
chr20	15022851	15022904	17703739	0	+	0.339623	(0.33,0.36]	chr20	1495060	1	EXON_SMALL	EXON_SMALL:INTRON	MACROD2:RNU6-115P	ENSG00000172264.18:ENSG00000201180.1	ENST00000217246.8:ENST00000684519.1:ENST00000642719.1:ENST00000364310.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	2	37	2	2.51887	3.579295	4.63972	0.0358636	6.04873e-7	0.147298	2.60562e-5
chr16	70571713	70571813	15730179	0	+	0.53	(0.49,0.53]	chr16	1253030	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	70	2	3.57669	3.57925	3.58181	3.59064e-5	4.83779e-6	8.71318e-4	1.51238e-4
chr12	6966448	6966500	13188866	0	-	0.461538	(0.455,0.49]	chr12	1032791	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000537646.5:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000545555.2:ENST00000678983.1:ENST00000678000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	54	2	3.54461	3.57924	3.61387	4.40117e-5	2.88949e-5	9.24938e-4	7.23839e-4
chr3	57575547	57575610	4210704	0	-	0.412698	(0.39,0.42]	chr3	355318	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	2.38186	3.57911	4.77636	0.00601449	2.28159e-7	0.0434483	1.13101e-5
chr2	85326997	85327096	2770183	0	-	0.616162	(0.59,1]	chr2	245656	6	CDS	CDS:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.9228	3.5790499999999996	4.2353	0.0165254	0.00981698	0.0873033	0.0612992
chrX	141907803	141907903	18883544	0	+	0.6	(0.59,1]	chrX	1608997	25	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.9228	3.5790499999999996	4.2353	0.0165254	0.00981698	0.0873033	0.0612992
chr17	43271559	43271655	16552638	0	-	0.666667	(0.59,1]	chr17	1358309	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	3.44238	3.57902	3.71566	0.0487443	0.00158239	0.175495	0.0167793
chr7	150945040	150945121	9128600	0	-	0.54321	(0.53,0.59]	chr7	697442	2	UTR3	UTR3:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	3.1234	3.578965	4.03453	0.00390623	4.6e-5	0.0322851	9.56296e-4
chr1	161001127	161001205	1331463	0	-	0.538462	(0.53,0.59]	chr1	136456	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000472573.5:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	3.5393	3.5789299999999997	3.61856	0.0303021	6.46017e-4	0.129773	0.00799743
chr11	46744022	46744122	12383480	0	-	0.46	(0.455,0.49]	chr11	955987	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	3.34125	3.578745	3.81624	1.48205e-4	6.54172e-6	0.00269793	1.94116e-4
chr11	57332958	57333053	12394118	0	-	0.568421	(0.53,0.59]	chr11	958548	1	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6:ENST00000529002.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.0404	3.578735	5.11707	0.0362529	1.35965e-4	0.148525	0.00231202
chr1	25900215	25900315	905267	0	-	0.39	(0.36,0.39]	chr1	94145	2	UTR3	UTR3:EXON_MRNA:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.32678	3.5786499999999997	4.83052	0.0193538	3.15227e-4	0.0943643	0.00452711
chr12	130874562	130874662	13154843	0	+	0.42	(0.39,0.42]	chr12	1027975	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	120	2	3.50572	3.578645	3.65157	2.01015e-7	1.54739e-7	1.02023e-5	9.16382e-6
chr1	6264432	6264514	842847	0	-	0.426829	(0.42,0.455]	chr1	85002	3	UTR3	UTR3:EXON_MRNA	ACOT7	ENSG00000097021.20	ENST00000608083.5:ENST00000361521.9:ENST00000545482.5:ENST00000377860.8:ENST00000418124.5:ENST00000377855.6:ENST00000377845.7:ENST00000377842.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	3.31161	3.578495	3.84538	0.00186138	1.2691e-4	0.018635	0.00219756
chr1	161462975	161463075	1333826	0	-	0.7	(0.59,1]	chr1	136938	221	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	426	10086	2	3.44766	3.578335	3.70901	4.83227e-9	3.34848e-10	4.47994e-7	3.97762e-8
chr11	57718237	57718335	12395370	0	-	0.479592	(0.455,0.49]	chr11	958899	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP42	ENSG00000213592.4	ENST00000530952.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	43	2	2.92901	3.578265	4.22752	0.00141135	1.24055e-5	0.0151901	3.28918e-4
chr11	61313861	61313915	12404037	0	-	0.481481	(0.455,0.49]	chr11	960218	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.18128	3.578265	4.97525	0.0111696	1.38474e-4	0.0665375	0.00254294
chr16	20784983	20785045	15582889	0	+	0.435484	(0.42,0.455]	chr16	1234782	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1:ENST00000567387.5:ENST00000561499.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	3.27707	3.578145	3.87922	0.00207325	1.04705e-4	0.0194849	0.0020295
chr18	46095014	46095080	17103922	0	-	0.409091	(0.39,0.42]	chr18	1404397	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.34349	3.577965	4.81244	0.0169272	1.71008e-7	0.0890655	8.87341e-6
chr2	216141185	216141252	2380068	0	+	0.432836	(0.42,0.455]	chr2	213823	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	3.52659	3.577575	3.62856	6.87022e-4	4.02604e-4	0.00876781	0.00549837
chr7	135592986	135593054	8552754	0	+	0.441176	(0.42,0.455]	chr7	652741	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.52659	3.577575	3.62856	6.87022e-4	4.02604e-4	0.00876781	0.00549837
chr2	61888179	61888257	2691539	0	-	0.525641	(0.49,0.53]	chr2	240594	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.21317	3.57747	3.94177	0.0104929	3.08783e-4	0.063428	0.00445935
chr10	91864484	91864583	11189582	0	+	0.343434	(0.33,0.36]	chr10	850705	16	UTR3	UTR3:EXON_MRNA	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.07736	3.57745	5.07754	0.0442037	7.92926e-5	0.172163	0.00150306
chr6	63685445	63685542	7205620	0	+	0.350515	(0.33,0.36]	chr6	556582	12	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.07736	3.57745	5.07754	0.0442037	7.92926e-5	0.172163	0.00150306
chr6	31635581	31635665	7115907	0	+	0.571429	(0.53,0.59]	chr6	545895	1	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469501.1:ENST00000487089.1:ENST00000487839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	3.33569	3.577245	3.8188	1.57373e-4	1.54941e-4	0.0028049	0.00260854
chr1	76700350	76700444	307202	0	+	0.553191	(0.53,0.59]	chr1	31551	7	EXON_PSEUDO	EXON_PSEUDO	TPI1P1	ENSG00000226415.1	ENST00000420977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	39	2	3.46349	3.57707	3.69065	9.2216e-4	3.04331e-4	0.0104432	0.00472028
chr18	23544434	23544526	17037398	0	-	0.554348	(0.53,0.59]	chr18	1400579	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	3.47419	3.5770600000000004	3.67993	8.75273e-4	3.22778e-4	0.0106963	0.0046122
chr5	166382500	166382599	6357346	0	+	0.575758	(0.53,0.59]	chr5	494315	3	EXON_PSEUDO	EXON_PSEUDO	CTB-63M22.1	ENSG00000229119.3	ENST00000518938.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	24	355	2	3.36154	3.57676	3.79198	1.16063e-7	1.81357e-10	7.141e-6	2.30081e-8
chr1	182883214	182883291	595144	0	+	0.441558	(0.42,0.455]	chr1	61663	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000485081.5:ENST00000473076.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.19674	3.57667	4.9566	0.0254904	2.10615e-4	0.117089	0.00327655
chr5	168566181	168566266	6969086	0	-	0.435294	(0.42,0.455]	chr5	532819	3	CDS	CDS:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.19674	3.57667	4.9566	0.0254904	2.10615e-4	0.117089	0.00327655
chr19	55695201	55695256	17397584	0	+	0.672727	(0.59,1]	chr19	1449019	2	CDS	CDS:EXON_MRNA:INTRON	EPN1	ENSG00000063245.15	ENST00000270460.11:ENST00000085079.11:ENST00000411543.6:ENST00000589704.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.6115	3.576665	4.54183	0.0070583	0.00584247	0.0478044	0.0422426
chr2	152735059	152735126	2139272	0	+	0.41791	(0.39,0.42]	chr2	198144	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000455875.5:ENST00000425034.5:ENST00000463690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	87	2	3.29649	3.5766299999999998	3.85677	3.31483e-6	5.6465e-7	1.20855e-4	2.45601e-5
chr10	68692309	68692408	11091126	0	+	0.282828	[0,0.29]	chr10	842935	6	UTR3	UTR3:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.79116	3.5764950000000004	4.36183	0.00287618	0.00170062	0.0247002	0.01759
chr14	98973392	98973471	14481390	0	+	0.582278	(0.53,0.59]	chr14	1131304	2	EXON_PSEUDO	EXON_PSEUDO	AL162151.3	ENSG00000234648.1	ENST00000448875.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	62	2	2.27113	3.57643	4.88173	0.0178853	1.36047e-7	0.0918323	7.30332e-6
chr14	22876001	22876094	14175063	0	+	0.677419	(0.59,1]	chr14	1110443	8	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	3.30708	3.5763249999999998	3.84557	0.0410704	0.00252451	0.163285	0.0226777
chr15	64683780	64683879	14978111	0	+	0.434343	(0.42,0.455]	chr15	1177327	22	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	3.36546	3.576295	3.78713	9.02026e-6	1.77317e-6	2.78052e-4	6.47642e-5
chr1	202741544	202741633	1451852	0	-	0.47191	(0.455,0.49]	chr1	145810	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.51261	3.5761950000000002	4.63978	0.00280343	6.94032e-4	0.0242354	0.00876781
chr2	190969439	190969536	3087769	0	-	0.350515	(0.33,0.36]	chr2	272818	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2:ENST00000361099.8:ENST00000673762.1:ENST00000540176.6:ENST00000674081.1:ENST00000674028.1:ENST00000673858.1:ENST00000423282.2:ENST00000673863.1:ENST00000673832.1:ENST00000673942.1:ENST00000673777.1:ENST00000673734.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	3.02394	3.5761700000000003	4.1284	0.00407303	8.89743e-4	0.0324137	0.0102057
chr3	155853379	155853465	4538372	0	-	0.488372	(0.455,0.49]	chr3	376029	2	CDS	CDS:EXON_MRNA	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	3.33595	3.576095	3.81624	1.48205e-4	2.70224e-5	0.00269793	6.22285e-4
chr11	57487156	57487218	12394697	0	-	0.580645	(0.53,0.59]	chr11	958733	2	CDS	CDS:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.71318	3.5759049999999997	4.43863	0.00340745	0.00254763	0.0283456	0.0233955
chr21	45476415	45476480	18145546	0	+	0.553846	(0.53,0.59]	chr21	1539694	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.63871	3.5758850000000004	4.51306	0.00148857	3.8713e-8	0.0159153	2.47685e-6
chr1	8867116	8867183	852434	0	-	0.641791	(0.59,1]	chr1	85936	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2:ENST00000645609.1:ENST00000645600.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	891	2	3.40284	3.57583	3.74882	2.00646e-7	2.86719e-9	1.13823e-5	2.62687e-7
chr5	127524530	127524627	6204747	0	+	0.536082	(0.53,0.59]	chr5	483421	1	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	3.21514	3.5758099999999997	3.93648	8.06385e-5	1.71972e-5	0.00167444	4.33104e-4
chr11	118749039	118749137	12625417	0	-	0.367347	(0.36,0.39]	chr11	979521	14	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.38112	3.5758	4.77048	0.0031815	2.24861e-7	0.0279343	1.11991e-5
chr12	52949510	52949590	12884238	0	+	0.5625	(0.53,0.59]	chr12	1001690	4	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	56	2	3.30943	3.5757849999999998	3.84214	0.0018255	6.5494e-6	0.0183913	1.94116e-4
chr19	34393989	34394066	17300498	0	+	0.571429	(0.53,0.59]	chr19	1429874	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	260	2	3.52437	3.575735	3.6271	2.16064e-7	2.61898e-9	1.21677e-5	2.44309e-7
chr9	33625200	33625293	10236161	0	+	0.516129	(0.49,0.53]	chr9	769679	11	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	27	2	2.8681	3.57571	4.28332	0.00338762	0.00175299	0.0288632	0.0171299
chr18	59328119	59328218	17142314	0	-	0.363636	(0.36,0.39]	chr18	1407602	4	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	3.54355	3.575695	3.60784	3.79774e-5	1.35556e-6	9.11358e-4	5.16469e-5
chr3	48604294	48604356	4168760	0	-	0.483871	(0.455,0.49]	chr3	349602	2	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000472438.5:ENST00000412343.5:ENST00000467690.5:ENST00000463708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.27492	3.575625	4.87633	0.0193827	2.95855e-4	0.0943643	0.00432147
chr3	161324912	161325005	4554013	0	-	0.483871	(0.455,0.49]	chr3	377089	1	EXON_PSEUDO	EXON_PSEUDO	EEF1GP4	ENSG00000240138.1	ENST00000467631.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	24	2	2.27492	3.575625	4.87633	0.0193827	2.95855e-4	0.0943643	0.00432147
chr4	73135190	73135265	5466582	0	-	0.48	(0.455,0.49]	chr4	437836	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1:ENST00000639793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.27492	3.575625	4.87633	0.0193827	2.95855e-4	0.0943643	0.00432147
chr21	33549672	33549771	18101153	0	+	0.414141	(0.39,0.42]	chr21	1534525	3	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.98448	3.5755549999999996	4.16663	2.45186e-4	1.84729e-5	0.00370692	5.02409e-4
chr7	50401521	50401621	8279146	0	+	0.43	(0.42,0.455]	chr7	630737	10	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	3.54395	3.5752800000000002	3.60661	6.53258e-6	4.00386e-6	2.12139e-4	1.28934e-4
chr12	113390563	113390660	13101760	0	+	0.43299	(0.42,0.455]	chr12	1022448	21	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	10	112	2	3.19592	3.5750450000000003	3.95417	1.3097e-6	2.4343e-7	5.02895e-5	1.34798e-5
chr22	19330697	19330789	18432360	0	-	0.391304	(0.39,0.42]	chr22	1570707	1	UTR3	UTR3:EXON_MRNA	HIRA	ENSG00000100084.14	ENST00000263208.5:ENST00000340170.8	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	1.50045	3.574815	5.64918	0.0335886	3.47137e-6	0.1408	1.13687e-4
chrX	3891337	3891437	18932699	0	-	0.33	(0.29,0.33]	chrX	1613506	92	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	2	18	2	2.45373	3.574515	4.6953	0.0156405	4.88271e-4	0.084273700000000007	0.00638318
chr15	73560953	73561048	15371785	0	-	0.452632	(0.42,0.455]	chr15	1214672	11	UTR3	UTR3:EXON_MRNA	NPTN	ENSG00000156642.17	ENST00000351217.10:ENST00000345330.9:ENST00000565325.5:ENST00000562924.5:ENST00000561898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.05889	3.574345	4.0898	0.00698074	0.00524205	0.0473262	0.0399155
chr16	18118772	18118872	15873948	0	-	0.44	(0.42,0.455]	chr16	1268631	1150	INTRON	INTRON	CTA-481E9.4:CTA-481E9.3	ENSG00000259929.5:ENSG00000260242.1	ENST00000567304.1:ENST00000563866.1	lncRNA	lncRNA	lncRNA	lncRNA	1	18	2	3.05889	3.574345	4.0898	0.00698074	0.00524205	0.0473262	0.0399155
chr3	122404310	122404363	3703507	0	+	0.45283	(0.42,0.455]	chr3	316463	2	CDS	CDS:EXON_MRNA	FAM162A	ENSG00000114023.15	ENST00000232125.9:ENST00000477892.5:ENST00000469967.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.05889	3.574345	4.0898	0.00698074	0.00524205	0.0473262	0.0399155
chr7	134299499	134299598	9078619	0	-	0.454545	(0.42,0.455]	chr7	693109	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC35B4	ENSG00000205060.11	ENST00000378509.9:ENST00000416907.5:ENST00000470969.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.05889	3.574345	4.0898	0.00698074	0.00524205	0.0473262	0.0399155
chr22	43168007	43168107	18527863	0	-	0.59	(0.53,0.59]	chr22	1582335	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484711.1:ENST00000494035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	1.88327	3.57409	5.26491	0.0298124	6.31437e-5	0.129773	0.00124286
chr11	61799626	61799725	12405897	0	-	0.282828	[0,0.29]	chr11	960580	1	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	15	110	2	3.28739	3.574065	3.86074	1.30969e-6	7.90315e-10	5.02895e-5	9.33685e-8
chr19	1924184	1924284	17194567	0	+	0.65	(0.59,1]	chr19	1412504	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SCAMP4	ENSG00000227500.10	ENST00000414057.6:ENST00000316097.13:ENST00000409472.5:ENST00000621748.1:ENST00000472442.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	2.32455	3.5739	4.82325	0.0520547	0.002381	0.193787	0.0216895
chr19	6416986	6417036	17442223	0	-	0.66	(0.59,1]	chr19	1456793	1	CDS	CDS:EXON_MRNA:PRIMIRNA	KHSRP:MIR3940	ENSG00000088247.18:ENSG00000284159.1	ENST00000600480.2:ENST00000398148.7:ENST00000619396.4:ENST00000579148.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1	31	2	2.32455	3.5739	4.82325	0.0520547	0.002381	0.193787	0.0216895
chr7	128849495	128849578	8522459	0	+	0.650602	(0.59,1]	chr7	650415	3	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.32455	3.5739	4.82325	0.0520547	0.002381	0.193787	0.0216895
chr9	35706036	35706111	10639543	0	-	0.6	(0.59,1]	chr9	805019	2	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000486788.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	31	2	2.32455	3.5739	4.82325	0.0520547	0.002381	0.193787	0.0216895
chr1	36286728	36286818	141540	0	+	0.511111	(0.49,0.53]	chr1	17556	5	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.38647	3.5737300000000003	3.76099	2.00194e-4	1.15525e-4	0.0034021	0.00204405
chr1	196673856	196673909	640813	0	+	0.45283	(0.42,0.455]	chr1	64431	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.7523	3.57349	4.39468	0.0153283	0.00240483	0.0828908	0.0217482
chr12	112162186	112162286	13543579	0	-	0.43	(0.42,0.455]	chr12	1065711	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000651701.1:ENST00000549306.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.7523	3.57349	4.39468	0.0153283	0.00240483	0.0828908	0.0217482
chr6	4125309	4125370	7575805	0	-	0.42623	(0.42,0.455]	chr6	578134	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000464583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.7523	3.57349	4.39468	0.0153283	0.00240483	0.0828908	0.0217482
chr18	59329704	59329803	17142330	0	-	0.343434	(0.33,0.36]	chr18	1407602	20	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	3.03166	3.57343	4.1152	3.49202e-5	8.39856e-9	8.5179e-4	6.66388e-7
chr9	111929588	111929678	10420340	0	+	0.433333	(0.42,0.455]	chr9	784466	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1:ENST00000474306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.8096	3.573195	4.33679	0.00253237	9.2626e-9	0.0233955	7.26845e-7
chr18	9119473	9119531	16750974	0	+	0.413793	(0.39,0.42]	chr18	1381358	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFV2:RP11-21J18.1	ENSG00000178127.13:ENSG00000265257.5	ENST00000318388.11:ENST00000578850.1:ENST00000579126.5:ENST00000400033.1:ENST00000474350.5:ENST00000483511.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	4	32	2	2.25245	3.5723149999999997	4.89218	0.00427758	1.6518e-4	0.0332717	0.0029267300000000002
chr12	49185198	49185287	13324018	0	-	0.606742	(0.59,1]	chr12	1045766	2	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	266	2	3.23534	3.57206	3.90878	4.26412e-6	5.64477e-7	1.35769e-4	2.73442e-5
chr1	169468643	169468739	1358129	0	-	0.40625	(0.39,0.42]	chr1	138658	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000643377.1:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.99507	3.571965	4.14886	0.00637824	0.00415881	0.0449937	0.0325842
chr11	125581210	125581266	12194182	0	+	0.392857	(0.39,0.42]	chr11	940666	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000531636.5:ENST00000527235.6:ENST00000530540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.99507	3.571965	4.14886	0.00637824	0.00415881	0.0449937	0.0325842
chr17	8552045	8552144	16433777	0	-	0.40404	(0.39,0.42]	chr17	1340779	1	CDS	CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000459986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.99507	3.571965	4.14886	0.00637824	0.00415881	0.0449937	0.0325842
chr2	217805794	217805893	3184104	0	-	0.40404	(0.39,0.42]	chr2	279596	8	INTRON	INTRON	TNS1	ENSG00000079308.20	ENST00000646520.1:ENST00000171887.8:ENST00000682258.1:ENST00000651849.1:ENST00000446688.5:ENST00000611415.4:ENST00000615025.5:ENST00000490566.1:ENST00000419504.5:ENST00000430930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.99507	3.571965	4.14886	0.00637824	0.00415881	0.0449937	0.0325842
chrX	155298784	155298847	19283509	0	-	0.396825	(0.39,0.42]	chrX	1639108	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5:ENST00000321926.4:ENST00000491205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.99507	3.571965	4.14886	0.00637824	0.00415881	0.0449937	0.0325842
chr10	97432984	97433076	11212395	0	+	0.478261	(0.455,0.49]	chr10	852981	6	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.27152	3.5716900000000003	4.87186	0.00786769	2.33781e-4	0.0514287	0.00385436
chr5	37290908	37291007	6539932	0	-	0.464646	(0.455,0.49]	chr5	506493	29	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.27152	3.5716900000000003	4.87186	0.00786769	2.33781e-4	0.0514287	0.00385436
chr8	11844090	11844188	9699196	0	-	0.530612	(0.53,0.59]	chr8	734802	17	UTR3	UTR3:EXON_MRNA	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	68	2	3.47419	3.57167	3.66915	8.75273e-4	2.76654e-6	0.0106963	9.47025e-5
chr16	58718607	58718688	15967738	0	-	0.469136	(0.455,0.49]	chr16	1281430	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5:ENST00000496461.5:ENST00000568368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.92099	3.571625	4.22226	0.00138399	1.23185e-5	0.0143168	3.58356e-4
chr1	154257160	154257258	480007	0	+	0.571429	(0.53,0.59]	chr1	49691	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000489076.1:ENST00000433615.5:ENST00000428595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	3.55018	3.571565	3.59295	6.52276e-6	4.77401e-6	1.94038e-4	1.64158e-4
chr5	14696103	14696202	5884875	0	+	0.444444	(0.42,0.455]	chr5	462679	32	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	3.31073	3.57149	3.83225	1.94134e-4	6.45764e-6	0.00332542	1.92232e-4
chr1	155320509	155320609	483682	0	+	0.54	(0.53,0.59]	chr1	50803	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000447866.5:ENST00000368356.9:ENST00000467076.5:ENST00000356657.10:ENST00000612683.1:ENST00000492244.5:ENST00000490140.1:ENST00000489324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	81	2	2.95437	3.57145	4.18853	2.85501e-4	5.25589e-7	0.00456926	2.31205e-5
chr11	63974680	63974780	11977972	0	+	0.72	(0.59,1]	chr11	918576	1	CDS_START	CDS_START:CDS:EXON_MRNA	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	16	383	2	3.26137	3.571345	3.88132	1.4285e-6	8.44497e-8	5.93191e-5	4.83237e-6
chr12	54345462	54345515	12892101	0	+	0.471698	(0.455,0.49]	chr12	1003000	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1:ENST00000550713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	3.32637	3.5713049999999997	3.81624	1.64563e-4	1.48205e-4	0.00269793	0.00269001
chr1	156525502	156525600	1315572	0	-	0.428571	(0.42,0.455]	chr1	133633	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	2.85709	3.571295	4.2855	1.7179e-4	8.02587e-6	0.00279324	2.50919e-4
chr6	132815029	132815088	7406811	0	+	0.559322	(0.53,0.59]	chr6	567788	2	CDS	CDS:EXON_MRNA	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	267	2	3.24549	3.5711500000000003	3.89681	1.30431e-7	1.56941e-9	7.88522e-6	1.57294e-7
chr1	85653168	85653267	1137316	0	-	0.333333	(0.33,0.36]	chr1	113123	39	UTR3	UTR3:EXON_MRNA	ZNHIT6	ENSG00000117174.11	ENST00000370574.4:ENST00000431532.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.31026	3.5711199999999996	4.83198	0.0519897	1.88689e-4	0.18423900000000001	0.0032588
chr6	75243716	75243773	7800230	0	-	0.54386	(0.53,0.59]	chr6	597639	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6:ENST00000377978.3:ENST00000481061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.87133	3.5711000000000004	5.27087	0.0308819	5.9416e-5	0.130016	0.00130151
chr6	142203984	142204065	7442853	0	+	0.432099	(0.42,0.455]	chr6	569611	1	CDS	CDS:EXON_MRNA:INTRON	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	3.05063	3.57109	4.09155	5.43749e-5	2.98142e-5	0.00121043	6.7355e-4
chr1	149885595	149885690	1287099	0	-	0.452632	(0.42,0.455]	chr1	127851	13	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.90081	3.5710699999999997	4.24133	0.00326918	1.31286e-4	0.0282494	0.00226535
chr10	73376094	73376194	11571403	0	-	0.49	(0.455,0.49]	chr10	880850	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000463788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	3.49033	3.5705600000000004	3.65079	7.92678e-4	3.61776e-4	0.00933379	0.00544764
chr6	31797756	31797856	7662596	0	-	0.58	(0.53,0.59]	chr6	585350	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.37399	3.57016	4.76633	0.0126178	6.98999e-4	0.0717599	0.00846751
chr12	6529774	6529866	12713546	0	+	0.565217	(0.53,0.59]	chr12	986617	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000539084.5:ENST00000315579.10:ENST00000539885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	3.39416	3.5697900000000002	3.74542	0.00126006	2.30148e-4	0.013837	0.00352524
chr4	24540107	24540203	5358827	0	-	0.395833	(0.39,0.42]	chr4	429836	1	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.5823	3.569765	4.55723	0.00246531	0.00117753	0.0230262	0.0127276
chr14	39149372	39149470	14595083	0	-	0.326531	(0.29,0.33]	chr14	1143341	17	UTR3	UTR3:EXON_MRNA	TRAPPC6B	ENSG00000182400.15	ENST00000469361.5:ENST00000347691.9:ENST00000330149.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	3.31653	3.569665	3.8228	0.00261621	1.45428e-4	0.0238929	0.00244094
chr19	48619143	48619181	17602835	0	-	0.657895	(0.59,1]	chr19	1482915	1	UTR5	UTR5:EXON_MRNA	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000547892.1:ENST00000549370.5:ENST00000549273.5:ENST00000552705.5:ENST00000552851.1:ENST00000550671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	37	927	2	3.35608	3.56937	3.78266	3.43955e-7	1.78347e-9	1.80175e-5	1.75224e-7
chr16	20786151	20786251	15582903	0	+	0.41	(0.39,0.42]	chr16	1234789	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1:ENST00000567387.5:ENST00000561499.1:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	2.9483	3.5692200000000005	4.19014	1.18306e-4	4.68172e-9	0.00224891	4.02406e-7
chr22	20065624	20065720	18297047	0	+	0.520833	(0.49,0.53]	chr22	1553104	11	UTR3	UTR3:EXON_MRNA	TANGO2	ENSG00000183597.16	ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000398042.6:ENST00000399807.7:ENST00000327374.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	1.81659	3.56919	5.32179	0.0376859	2.63311e-5	0.147713	6.73425e-4
chr7	100605675	100605743	8427988	0	+	0.588235	(0.53,0.59]	chr7	643259	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000490909.1:ENST00000486440.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	68	2	2.0404	3.56906	5.09772	0.0362529	2.38604e-8	0.148525	1.64029e-6
chr17	81859266	81859326	16709669	0	-	0.6	(0.59,1]	chr17	1377721	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680719.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000679366.1:ENST00000681020.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	148	2	2.59346	3.5686850000000003	4.54391	2.16651e-4	7.07916e-6	0.00335206	2.27834e-4
chr2	69320074	69320173	2718259	0	-	0.40404	(0.39,0.42]	chr2	241994	4	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.0503	3.56866	4.08702	0.00570576	3.01232e-5	0.0424438	6.78876e-4
chr5	131159546	131159611	6826788	0	-	0.430769	(0.42,0.455]	chr5	522063	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000675135.1:ENST00000508495.5:ENST00000508488.2:ENST00000676117.1:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2:ENST00000504202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	69	2	3.31073	3.5686549999999997	3.82658	1.94134e-4	7.38339e-7	0.00332542	3.082e-5
chr18	77971798	77971895	17184243	0	-	0.453608	(0.42,0.455]	chr18	1410244	13	EXON_LNCRNA	EXON_LNCRNA	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000577408.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	3	41	2	3.10874	3.5682300000000002	4.02772	5.40397e-4	4.30844e-5	0.00688813	0.00100091
chr6	26124332	26124428	7101132	0	+	0.65625	(0.59,1]	chr6	542793	1	CDS	CDS:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000377791.4:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	322	2	3.52661	3.56817	3.60973	7.68551e-7	5.93283e-7	3.54057e-5	2.55822e-5
chr12	49273029	49273127	12865718	0	+	0.602041	(0.59,1]	chr12	999063	9	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000552448.1:ENST00000301072.11:ENST00000639419.1:ENST00000548470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	512	2	3.35075	3.56804	3.78533	5.77823e-7	2.2657e-8	2.77516e-5	1.57087e-6
chrX	119471227	119471311	18841534	0	+	0.27381	[0,0.29]	chrX	1605570	3	UTR3	UTR3:EXON_MRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.65703	3.56799	4.47895	0.00320067	2.02456e-6	0.0280721	7.23108e-5
chr7	103363343	103363439	8441664	0	+	0.427083	(0.42,0.455]	chr7	645100	1	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.1201	3.56786	5.01562	0.00744913	1.01971e-4	0.0492835	0.0019861
chr19	11107391	11107452	17230043	0	+	0.557377	(0.53,0.59]	chr19	1419567	1	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.64475	3.56764	4.49053	0.00453071	4.67404e-8	0.0351187	2.90468e-6
chr22	19724023	19724108	18295919	0	+	0.764706	(0.59,1]	chr22	1552888	3	CDS	CDS:UTR3:EXON_MRNA	SEPT5-GP1BB:SEPTIN5:GP1BB	ENSG00000284874.1:ENSG00000184702.20:ENSG00000203618.6	ENST00000455843.5:ENST00000431044.5:ENST00000470814.1:ENST00000366425.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	131	2	2.71222	3.5675999999999997	4.42298	0.00398753	5.25184e-7	0.031888	2.57927e-5
chr6	36231203	36231302	7133195	0	+	0.555556	(0.53,0.59]	chr6	549421	7	UTR3	UTR3:EXON_MRNA	BRPF3	ENSG00000096070.19	ENST00000357641.10:ENST00000339717.11:ENST00000449261.6:ENST00000534694.5:ENST00000532330.5:ENST00000534400.5:ENST00000441123.1:ENST00000441730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.36244	3.56733	4.77222	0.0131162	6.67251e-4	0.073569	0.00867533
chr8	140525749	140525849	10132100	0	-	0.54	(0.53,0.59]	chr8	760954	57	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.36244	3.56733	4.77222	0.0131162	6.67251e-4	0.073569	0.00867533
chr18	59338856	59338953	17142428	0	-	0.43299	(0.42,0.455]	chr18	1407623	2	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	16	198	2	3.33715	3.5672699999999997	3.79739	8.31419e-7	7.54339e-10	3.79504e-5	8.16554e-8
chr3	38483629	38483728	3421748	0	+	0.464646	(0.455,0.49]	chr3	297512	4	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.68956	3.56719	5.44482	0.0381365	1.36044e-5	0.155455	3.54469e-4
chr1	179865176	179865272	1394845	0	-	0.479167	(0.455,0.49]	chr1	141318	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1	protein_coding	protein_coding	protein_coding	protein_coding	9	107	2	3.44856	3.56715	3.68574	8.64409e-7	4.36168e-7	3.91779e-5	1.97292e-5
chr7	139089695	139089759	9102493	0	-	0.34375	(0.33,0.36]	chr7	694583	2	CDS	CDS:UTR5:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.7655	3.56714	4.36878	0.0175892	0.0021194	0.0918323	0.0198008
chr16	29963143	29963243	15627751	0	+	0.62	(0.59,1]	chr16	1239551	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM219	ENSG00000149932.17	ENST00000414689.6:ENST00000279396.11:ENST00000575829.6:ENST00000561899.6:ENST00000570255.6:ENST00000566848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	41	2	2.50322	3.5671399999999998	4.63106	0.00863444	0.00537945	0.0556009	0.0406564
chr22	37226672	37226772	18503505	0	-	0.68	(0.59,1]	chr22	1578945	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11:ENST00000406508.5:ENST00000481215.1:ENST00000405484.5:ENST00000441619.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.50322	3.5671399999999998	4.63106	0.00863444	0.00537945	0.0556009	0.0406564
chr5	134857494	134857591	6232056	0	+	0.340206	(0.33,0.36]	chr5	485469	2	UTR3	UTR3:EXON_MRNA	C5orf24	ENSG00000181904.9	ENST00000338051.4:ENST00000394976.4:ENST00000504727.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.00573	3.567065	4.1284	0.00630535	0.00407303	0.044701	0.0324137
chr17	82602274	82602371	16384595	0	+	0.412371	(0.39,0.42]	chr17	1332764	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000529652.1:ENST00000624186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	8	72	2	1.97465	3.566915	5.15918	0.00476181	9.11314e-9	0.036813	7.16729e-7
chr7	30595021	30595082	8203482	0	+	0.786885	(0.59,1]	chr7	625753	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.72057	3.56691	5.41325	0.0314051	3.01546e-4	0.131369	0.00472028
chrX	85089656	85089755	18751849	0	+	0.343434	(0.33,0.36]	chrX	1600208	21	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.00573	3.56688	4.12803	0.00630535	2.90032e-5	0.044701	7.24986e-4
chr6	158776407	158776504	8044005	0	-	0.402062	(0.39,0.42]	chr6	614935	1	CDS	CDS:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	1.74181	3.566845	5.39188	0.0245629	1.75441e-5	0.114841	4.38078e-4
chr15	90882770	90882869	15103390	0	+	0.50505	(0.49,0.53]	chr15	1188584	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	218	2	3.43803	3.5667999999999997	3.69557	1.70147e-8	1.45457e-8	1.22901e-6	1.17124e-6
chr1	114567651	114567747	1238140	0	-	0.354167	(0.33,0.36]	chr1	121061	2	UTR3	UTR3:EXON_MRNA	BCAS2	ENSG00000116752.6	ENST00000369541.4	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.15976	3.56678	3.9738	0.00437542	5.94302e-5	0.0340502	0.00119141
chr2	219210933	219211020	3191160	0	-	0.574713	(0.53,0.59]	chr2	280793	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000485773.5:ENST00000487380.5:ENST00000443805.1:ENST00000492543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.27113	3.566725	4.86232	0.0178853	4.57805e-4	0.0918323	0.00608573
chr7	128769062	128769114	8521846	0	+	0.423077	(0.42,0.455]	chr7	650197	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	9	127	2	3.14957	3.566685	3.9838	9.82296e-5	2.51956e-9	0.00193927	2.35854e-7
chr1	26781526	26781622	111028	0	+	0.4375	(0.42,0.455]	chr1	13356	9	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	7	84	2	3.46037	3.566665	3.67296	2.69406e-6	2.43592e-6	1.01443e-4	8.48998e-5
chr2	30259450	30259546	1706803	0	+	0.520833	(0.49,0.53]	chr2	167573	20	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.46958	3.5666450000000003	4.66371	0.00344146	5.91374e-7	0.0292838	2.55031e-5
chr1	226994169	226994267	1534714	0	-	0.642857	(0.59,1]	chr1	153615	45	UTR3	UTR3:EXON_MRNA	CDC42BPA	ENSG00000143776.19	ENST00000366766.7:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.7:ENST00000448940.5:ENST00000442054.5	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	1.8502	3.56652	5.28284	0.0334531	4.04404e-4	0.140296	0.00550292
chr2	9591391	9591453	2508231	0	-	0.451613	(0.42,0.455]	chr2	226368	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.60504	3.56635	4.52766	0.00201537	1.58778e-6	0.0197874	5.89925e-5
chr1	174993607	174993701	559132	0	+	0.404255	(0.39,0.42]	chr1	58805	1	UTR3	UTR3:EXON_MRNA	RABGAP1L	ENSG00000152061.24	ENST00000681986.1:ENST00000489615.5:ENST00000392064.6:ENST00000485114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.70591	3.565875	4.42584	0.0185716	0.00199429	0.0932453	0.0189001
chr10	87245257	87245356	11605719	0	-	0.40404	(0.39,0.42]	chr10	883844	52	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUTM2A-AS1	ENSG00000223482.8	ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000663644.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.6:ENST00000433920.5:ENST00000447424.5:ENST00000666515.1:ENST00000663113.1:ENST00000667520.1	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	2.70591	3.565875	4.42584	0.0185716	0.00199429	0.0932453	0.0189001
chr20	16732249	16732336	17714128	0	+	0.413793	(0.39,0.42]	chr20	1495173	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRPB2	ENSG00000125870.11	ENST00000377943.9:ENST00000246071.8:ENST00000478522.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.70591	3.565875	4.42584	0.0185716	0.00199429	0.0932453	0.0189001
chr5	6599728	6599826	6434375	0	-	0.408163	(0.39,0.42]	chr5	501468	6	UTR3	UTR3:EXON_MRNA	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000513888.5:ENST00000506139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.70591	3.565875	4.42584	0.0185716	0.00199429	0.0932453	0.0189001
chr5	180945655	180945755	6417183	0	+	0.42	(0.39,0.42]	chr5	499533	337	INTRON	INTRON	BTNL8	ENSG00000113303.12	ENST00000231229.8:ENST00000400707.7:ENST00000340184.9:ENST00000508408.5:ENST00000511704.5:ENST00000610640.4:ENST00000533815.2:ENST00000505126.5:ENST00000514448.5:ENST00000513442.1:ENST00000503543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.70591	3.565875	4.42584	0.0185716	0.00199429	0.0932453	0.0189001
chr4	77048318	77048404	5479173	0	-	0.383721	(0.36,0.39]	chr4	439256	1	CDS	CDS:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.0992	3.5656999999999996	4.0322	0.00588589	5.86576e-4	0.0427941	0.00742331
chr1	149584193	149584292	463618	0	+	0.50505	(0.49,0.53]	chr1	46654	3	CDS	CDS:EXON_MRNA	PPIAL4C	ENSG00000263464.2	ENST00000585245.2	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.38683	3.5656049999999997	4.74438	0.012654	5.91752e-4	0.0718207	0.00743488
chr6	149684099	149684198	8018508	0	-	0.494949	(0.49,0.53]	chr6	612683	11	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5:ENST00000392273.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.38683	3.5656049999999997	4.74438	0.012654	5.91752e-4	0.0718207	0.00743488
chr1	156742490	156742586	1316753	0	-	0.260417	[0,0.29]	chr1	133965	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	57	2	3.36018	3.56555	3.77092	6.14902e-6	2.97029e-6	1.8415e-4	1.10828e-4
chr2	219212386	219212438	3191175	0	-	0.519231	(0.49,0.53]	chr2	280799	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000492543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.70307	3.565485	4.4279	0.00363585	0.00196987	0.0298137	0.0193972
chr3	194427163	194427252	4654719	0	-	0.47191	(0.455,0.49]	chr3	384382	2	CDS	CDS:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.85172	3.56539	4.27906	0.010864	8.82347e-6	0.0643837	2.48294e-4
chr1	121117061	121117159	1259537	0	-	0.622449	(0.59,1]	chr1	123389	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	H2BP1	ENSG00000223345.3	ENST00000430394.1:ENST00000412169.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	135	2	3.48457	3.56534	3.64611	1.16515e-4	1.05289e-5	0.0020505	3.15117e-4
chr17	28879899	28879994	16488317	0	-	0.631579	(0.59,1]	chr17	1348326	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.68392	3.565315	4.44671	0.0202468	0.00931497	0.0984041	0.0586162
chr17	59155731	59155805	16292448	0	+	0.513514	(0.49,0.53]	chr17	1321310	1	UTR5	UTR5:EXON_MRNA	PRR11	ENSG00000068489.13	ENST00000578777.5:ENST00000577457.1:ENST00000262293.9:ENST00000578542.5:ENST00000582995.5:ENST00000581182.1:ENST00000580177.5:ENST00000614081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	3.11892	3.565315	4.01171	0.00398244	4.88513e-5	0.0322851	0.00100497
chr4	169697461	169697552	5217961	0	+	0.406593	(0.39,0.42]	chr4	420911	4	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	3.0503	3.56519	4.08008	0.00570576	1.01757e-6	0.0424438	4.04731e-5
chr17	5438193	5438273	16421565	0	-	0.3625	(0.36,0.39]	chr17	1338192	1	CDS	CDS:UTR5:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573406.1:ENST00000576122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.29974	3.56513	4.83052	0.00926291	3.15227e-4	0.0586162	0.00452711
chr16	28834342	28834415	15620373	0	+	0.534247	(0.53,0.59]	chr16	1238464	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	76	2	3.43955	3.5651	3.69065	3.04331e-4	3.45609e-6	0.00472028	1.13431e-4
chr19	34402317	34402413	17300591	0	+	0.427083	(0.42,0.455]	chr19	1429899	18	UTR3	UTR3:EXON_MRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000592740.5:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.17433	3.5648549999999997	3.95538	3.82052e-4	6.68846e-5	0.0052929	0.00142352
chr2	84778126	84778223	2769141	0	-	0.453608	(0.42,0.455]	chr2	245559	10	EXON_PSEUDO	EXON_PSEUDO	LDHAP7	ENSG00000235847.2	ENST00000398295.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	3.17397	3.5646750000000003	3.95538	0.0031821	6.68846e-5	0.0267094	0.00142352
chr17	78121555	78121633	16693134	0	-	0.653846	(0.59,1]	chr17	1375233	1	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589553.5:ENST00000588087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	208	2	2.88849	3.56458	4.24067	6.26999e-4	4.02938e-8	0.00831935	2.56372e-6
chr10	73770279	73770362	11115870	0	+	0.46988	(0.455,0.49]	chr10	845924	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000496827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	3.12843	3.5645599999999997	4.00069	0.00392855	5.13615e-5	0.0322851	0.00104999
chrX	49333286	49333346	18694597	0	+	0.533333	(0.53,0.59]	chrX	1594852	1	CDS	CDS:EXON_MRNA	GAGE13	ENSG00000274274.1	ENST00000612958.1	protein_coding	protein_coding	protein_coding	protein_coding	5	78	2	3.2401	3.5645499999999997	3.889	5.1985e-5	4.69357e-6	0.00106081	1.625e-4
chr1	182859992	182860088	594896	0	+	0.40625	(0.39,0.42]	chr1	61596	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000477802.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	3.23057	3.564525	3.89848	3.34829e-4	9.30194e-5	0.00509483	0.00169783
chr6	28903389	28903486	7652686	0	-	0.391753	(0.39,0.42]	chr6	583182	5	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	3.23057	3.564525	3.89848	3.34829e-4	9.30194e-5	0.00509483	0.00169783
chr6	57184784	57184883	7191746	0	+	0.292929	(0.29,0.33]	chr6	556128	7	UTR3	UTR3:EXON_MRNA	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	3.31586	3.56447	3.81308	1.62041e-5	7.56828e-6	4.51701e-4	2.18724e-4
chr1	161210110	161210188	499150	0	+	0.448718	(0.42,0.455]	chr1	54024	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	1.99701	3.56435	5.13169	0.0235036	8.60227e-5	0.111072	0.00160731
chr22	19507765	19507864	18295652	0	+	0.454545	(0.42,0.455]	chr22	1552787	1	CDS	CDS:UTR3:EXON_MRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	1.99701	3.56435	5.13169	0.0235036	8.60227e-5	0.111072	0.00160731
chr11	61303045	61303100	12403916	0	-	0.381818	(0.36,0.39]	chr11	960182	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000540166.5:ENST00000538470.2:ENST00000679855.1:ENST00000539332.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	3.4589	3.5643399999999996	3.66978	3.25031e-4	9.87237e-5	0.00463603	0.00194682
chr1	40260911	40260985	152896	0	+	0.432432	(0.42,0.455]	chr1	19128	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000479131.5:ENST00000675754.1:ENST00000472583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	3.27707	3.564285	3.8515	0.0119089	0.00207325	0.0686664	0.0194849
chr17	30422935	30423023	16186271	0	+	0.431818	(0.42,0.455]	chr17	1306420	4	CDS	CDS:EXON_MRNA	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.27707	3.564285	3.8515	0.0119089	0.00207325	0.0686664	0.0194849
chr1	1046396	1046480	2329	0	+	0.666667	(0.59,1]	chr1	519	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.25872	3.5642449999999997	4.86977	0.0193473	0.00246014	0.0969537	0.0230058
chr1	159920329	159920409	1326693	0	-	0.6375	(0.59,1]	chr1	135591	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	100	2	2.65415	3.5642199999999997	4.47429	0.00171847	1.05499e-5	0.0168227	3.15564e-4
chrX	23667570	23667670	18615875	0	+	0.69	(0.59,1]	chrX	1589652	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRDX4	ENSG00000123131.13	ENST00000379349.5:ENST00000379341.9:ENST00000495599.1:ENST00000379331.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	1.96265	3.564205	5.16576	0.0238491	6.55716e-4	0.112466	0.0080931
chr16	21636858	21636958	15585414	0	+	0.53	(0.49,0.53]	chr16	1235197	94	INTRON	INTRON	METTL9	ENSG00000197006.14	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000615720.4:ENST00000568826.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.84493	3.5641249999999998	4.28332	0.00338762	5.26587e-4	0.0288632	0.00679103
chr5	127554185	127554285	6205051	0	+	0.53	(0.49,0.53]	chr5	483458	4	UTR3	UTR3:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.84493	3.5641249999999998	4.28332	0.00338762	5.26587e-4	0.0288632	0.00679103
chr1	228457817	228457873	1539746	0	-	0.428571	(0.42,0.455]	chr1	154187	1	UTR5	UTR5:EXON_MRNA	H2AW	ENSG00000181218.5	ENST00000366695.3	protein_coding	protein_coding	protein_coding	protein_coding	6	75	2	3.455	3.56398	3.67296	1.25169e-5	2.43592e-6	3.63117e-4	8.48998e-5
chr3	14486684	14486783	3320849	0	+	0.545455	(0.53,0.59]	chr3	292287	18	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.2596	3.5639149999999997	4.86823	0.0185443	4.35895e-4	0.0948733	0.00623608
chr1	46285717	46285815	981892	0	-	0.581633	(0.53,0.59]	chr1	103528	5	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000617760.4:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.45844	3.5639000000000003	4.66936	0.00930921	0.00103174	0.0587563	0.0121443
chr3	186581370	186581441	3957097	0	+	0.521127	(0.49,0.53]	chr3	333566	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1:ENST00000681543.1:ENST00000679794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	71	2	3.41615	3.56386	3.71157	9.74162e-5	1.83225e-6	0.00193088	6.66083e-5
chr5	179609814	179609913	6413822	0	+	0.424242	(0.42,0.455]	chr5	499065	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RUFY1	ENSG00000176783.15	ENST00000319449.9:ENST00000393438.6:ENST00000437570.6:ENST00000508797.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	3.4231	3.563805	3.70451	0.00112541	2.72131e-4	0.0128481	0.00404713
chr3	49104733	49104763	4172530	0	-	0.4	(0.39,0.42]	chr3	350420	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000414533.5:ENST00000635443.1:ENST00000494767.2:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5:ENST00000482261.7:ENST00000634527.1:ENST00000634802.1:ENST00000634602.1:ENST00000635622.1:ENST00000635231.1:ENST00000635052.1:ENST00000635194.1:ENST00000479495.5:ENST00000418549.3:ENST00000417025.2:ENST00000634609.1:ENST00000635494.1:ENST00000634953.1:ENST00000634724.1:ENST00000635278.1:ENST00000634359.1:ENST00000482438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	2.67296	3.563765	4.45457	0.00159022	4.72037e-8	0.0168452	2.93086e-6
chr10	73006442	73006518	11568227	0	-	0.407895	(0.39,0.42]	chr10	880431	2	EXON_PSEUDO	EXON_PSEUDO	RPL17P50	ENSG00000213700.3	ENST00000396131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	36	2	3.18738	3.56367	3.93996	0.00841622	7.15306e-5	0.054565	0.00137393
chr12	4559567	4559663	12705744	0	+	0.322917	(0.29,0.33]	chr12	985675	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAD51AP1	ENSG00000111247.15	ENST00000228843.13:ENST00000352618.9:ENST00000442992.6:ENST00000544931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	3.48001	3.56355	3.64709	0.00126219	3.76873e-4	0.013837	0.00523508
chr3	160433709	160433809	3853120	0	+	0.32	(0.29,0.33]	chr3	327497	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	3.48001	3.56355	3.64709	0.00126219	3.76873e-4	0.013837	0.00523508
chr4	71029744	71029841	4879408	0	+	0.329897	(0.29,0.33]	chr4	401965	4	UTR3	UTR3:EXON_MRNA	DCK	ENSG00000156136.10	ENST00000503359.5:ENST00000504730.5:ENST00000504952.1:ENST00000286648.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	3.48001	3.56355	3.64709	0.00126219	3.76873e-4	0.013837	0.00523508
chr19	49429772	49429865	17606390	0	-	0.430108	(0.42,0.455]	chr19	1483928	5	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.32646	3.5635499999999998	4.80064	0.00624136	3.0479e-4	0.0443844	0.00472028
chr14	69704672	69704742	14374916	0	+	0.528571	(0.49,0.53]	chr14	1123264	2	CDS	CDS:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.23006	3.56338	3.8967	0.0128791	0.00253719	0.0725185	0.0233955
chr20	35654629	35654727	17955005	0	-	0.571429	(0.53,0.59]	chr20	1521109	12	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	106	2	3.19677	3.563205	3.92964	1.94039e-5	3.76982e-7	5.22287e-4	1.73504e-5
chr18	59329011	59329110	17142323	0	-	0.333333	(0.33,0.36]	chr18	1407602	13	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.78095	3.5628949999999997	4.34484	0.00388614	5.33265e-6	0.0322851	1.63127e-4
chr1	22086493	22086548	93024	0	+	0.363636	(0.36,0.39]	chr1	10786	2	CDS	CDS:UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000651171.1:ENST00000652582.1:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	2.75147	3.562785	4.3741	1.45783e-4	4.74881e-6	0.00244642	1.63715e-4
chr3	31600359	31600459	3392126	0	+	0.38	(0.36,0.39]	chr3	295032	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	65	2	3.10506	3.56274	4.02042	7.38785e-4	1.39717e-7	0.00924579	7.45332e-6
chr1	154946423	154946518	1305917	0	-	0.589474	(0.53,0.59]	chr1	131551	10	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.63316	3.56273	4.4923	0.00474401	2.39218e-6	0.0361423	9.1799e-5
chr3	187075703	187075803	3960062	0	+	0.5	(0.49,0.53]	chr3	334035	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.38097	3.5626749999999996	4.74438	0.0425419	5.91752e-4	0.167547	0.00743488
chr5	60764226	60764279	6607977	0	-	0.509434	(0.49,0.53]	chr5	510714	1	CDS	CDS:UTR3:EXON_MRNA	ELOVL7	ENSG00000164181.14	ENST00000508821.6:ENST00000425382.5:ENST00000505959.5:ENST00000504455.5:ENST00000507047.5:ENST00000511799.5:ENST00000514809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.38097	3.5626749999999996	4.74438	0.0425419	5.91752e-4	0.167547	0.00743488
chr5	140538918	140538998	6255231	0	+	0.5125	(0.49,0.53]	chr5	487657	1	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000421706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.38097	3.5626749999999996	4.74438	0.0425419	5.91752e-4	0.167547	0.00743488
chr7	16600760	16600860	8703003	0	-	0.5	(0.49,0.53]	chr7	664639	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.38097	3.5626749999999996	4.74438	0.0425419	5.91752e-4	0.167547	0.00743488
chr16	1699486	1699584	15488675	0	+	0.357143	(0.33,0.36]	chr16	1226188	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	3.13716	3.5626550000000003	3.98815	1.59791e-5	1.81315e-7	4.46084e-4	9.3576e-6
chr5	95464212	95464310	6716775	0	-	0.285714	[0,0.29]	chr5	516803	26	UTR3	UTR3:EXON_MRNA	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.16074	3.562525	4.96431	0.0222978	1.20737e-4	0.105845	0.00210079
chr8	47882004	47882097	9816612	0	-	0.494624	(0.49,0.53]	chr8	742733	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	2.57142	3.56234	4.55326	8.92776e-4	2.17704e-8	0.0108581	1.51603e-6
chr8	47836432	47836527	9816129	0	-	0.526316	(0.49,0.53]	chr8	742615	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	101	2	3.21048	3.56217	3.91386	5.82678e-6	3.70757e-7	1.92359e-4	1.71165e-5
chr6	32157636	32157720	7118470	0	+	0.547619	(0.53,0.59]	chr6	546929	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000495908.1:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	3.43342	3.562035	3.69065	3.04331e-4	8.93729e-5	0.00472028	0.00165837
chr7	872469	872562	8093899	0	+	0.516129	(0.49,0.53]	chr7	618486	1	CDS	CDS:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	3.4386	3.561795	3.68499	2.9991e-4	9.97799e-7	0.00472028	3.98163e-5
chr7	135929232	135929331	9085573	0	-	0.313131	(0.29,0.33]	chr7	693646	26	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	13	96	2	2.90249	3.5617799999999997	4.22107	2.80902e-6	3.84846e-8	9.57516e-5	2.72119e-6
chr1	143904302	143904398	1261679	0	-	0.677083	(0.59,1]	chr1	123668	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	H2BP2:H3-2	ENSG00000234571.2:ENSG00000273213.4	ENST00000609585.1:ENST00000669710.1:ENST00000650532.1:ENST00000609879.2:ENST00000449108.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	5	117	2	2.31145	3.5617	4.81195	0.00362809	1.42586e-6	0.029797	5.92213e-5
chr12	63823401	63823500	12916680	0	+	0.494949	(0.49,0.53]	chr12	1006815	15	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	37	2	2.99849	3.5616950000000003	4.1249	0.00630123	2.4461e-5	0.0445415	5.72214e-4
chrX	16852748	16852811	18971767	0	-	0.492063	(0.49,0.53]	chrX	1615450	1	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000481586.1:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.99849	3.5616950000000003	4.1249	0.00630123	2.4461e-5	0.0445415	5.72214e-4
chr16	29697411	29697510	15626490	0	+	0.565657	(0.53,0.59]	chr16	1239217	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1:ENST00000564967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	2.68432	3.5614749999999997	4.43863	0.00254763	0.00118971	0.0233955	0.0128045
chr16	87830218	87830316	16072430	0	-	0.530612	(0.53,0.59]	chr16	1291249	3	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.68432	3.5614749999999997	4.43863	0.00254763	0.00118971	0.0233955	0.0128045
chr12	68719340	68719431	12940056	0	+	0.483516	(0.455,0.49]	chr12	1008433	1	CDS	CDS:UTR3:EXON_MRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.92099	3.56144	4.20189	0.00397662	0.00138399	0.0322851	0.0143168
chr1	25863271	25863365	904976	0	-	0.585106	(0.53,0.59]	chr1	94121	5	CDS	CDS:EXON_MRNA	PAQR7	ENSG00000182749.6	ENST00000675840.1:ENST00000374296.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.29875	3.56141	3.82407	0.0179666	0.00191422	0.0918323	0.018324
chr16	2458564	2458660	15492829	0	+	0.53125	(0.53,0.59]	chr16	1227392	17	UTR3	UTR3:EXON_MRNA	CCNF	ENSG00000162063.13	ENST00000293968.11:ENST00000397066.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.29875	3.56141	3.82407	0.0179666	0.00191422	0.0918323	0.018324
chr19	40750365	40750459	17567427	0	-	0.531915	(0.53,0.59]	chr19	1476617	7	UTR5	UTR5:EXON_MRNA:INTRON	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000596809.5:ENST00000597507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.29875	3.56141	3.82407	0.0179666	0.00191422	0.0918323	0.018324
chr4	118630439	118630538	5072749	0	+	0.565657	(0.53,0.59]	chr4	411838	1	EXON_LNCRNA	EXON_LNCRNA	RP11-384K6.6	ENSG00000260404.3	ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	23	2	3.29875	3.56141	3.82407	0.0179666	0.00191422	0.0918323	0.018324
chr7	30911909	30912009	8206084	0	+	0.58	(0.53,0.59]	chr7	626013	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	3.29875	3.56141	3.82407	0.0179666	0.00191422	0.0918323	0.018324
chr16	18791865	18791964	15877064	0	-	0.363636	(0.36,0.39]	chr16	1269296	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	3.37992	3.561375	3.74283	1.50915e-5	2.53603e-7	4.23797e-4	1.24441e-5
chr12	22659013	22659083	12785982	0	+	0.428571	(0.42,0.455]	chr12	993025	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.06293	3.561235	4.05954	0.00617886	0.00492128	0.0439741	0.0366648
chr9	33113825	33113878	10631592	0	-	0.45283	(0.42,0.455]	chr9	803442	2	CDS	CDS:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.06293	3.561235	4.05954	0.00617886	0.00492128	0.0439741	0.0366648
chrX	132071142	132071217	18860601	0	+	0.44	(0.42,0.455]	chrX	1607226	2	CDS	CDS:EXON_MRNA	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.06293	3.561235	4.05954	0.00617886	0.00492128	0.0439741	0.0366648
chr11	6614446	6614545	12249920	0	-	0.545455	(0.53,0.59]	chr11	946834	18	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	5	73	2	3.30344	3.56112	3.8188	1.54941e-4	9.28103e-6	0.0028049	2.58687e-4
chr21	9118690	9118790	18158031	0	-	0.36	(0.33,0.36]	chr21	1541809	357	INTRON	INTRON	TEKT4P2	ENSG00000188681.11	ENST00000416067.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	64	2	2.6254	3.5611	4.4968	0.00106803	2.94972e-8	0.0124232	1.96507e-6
chrX	48267345	48267444	18691161	0	+	0.484848	(0.455,0.49]	chrX	1593888	6	UTR3	UTR3:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.89975	3.561005	4.22226	3.94125e-4	1.23185e-5	0.00541075	3.58356e-4
chr1	201150461	201150561	1446651	0	-	0.33	(0.29,0.33]	chr1	145206	32	INTRON	INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	1.99415	3.5609900000000003	5.12783	0.0333928	5.31593e-5	0.140128	0.00108035
chr12	130876218	130876315	13154863	0	+	0.309278	(0.29,0.33]	chr12	1027987	4	UTR3	UTR3:EXON_MRNA	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000541679.7	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	2.83716	3.560975	4.28479	1.69403e-4	1.86411e-7	0.00298622	9.59082e-6
chr1	729118	729216	824336	0	-	0.581633	(0.53,0.59]	chr1	81527	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-206L10.17:RP11-206L10.2	ENSG00000230021.10:ENSG00000228327.3	ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000414688.6:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	1	22	2	3.1234	3.560795	3.99819	0.0111308	0.00390623	0.0665375	0.0322851
chr3	195783753	195783852	4661104	0	-	0.575758	(0.53,0.59]	chr3	385270	51	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	3.1234	3.560795	3.99819	0.0111308	0.00390623	0.0665375	0.0322851
chr19	41431410	41431504	17568989	0	-	0.574468	(0.53,0.59]	chr19	1477000	2	UTR3	UTR3:EXON_MRNA	DMAC2	ENSG00000105341.19	ENST00000221943.14:ENST00000438807.7:ENST00000589503.1:ENST00000592922.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	2.35511	3.56072	4.76633	0.0445399	6.98999e-4	0.172163	0.00846751
chr22	30340288	30340381	18469724	0	-	0.580645	(0.53,0.59]	chr22	1575858	2	CDS	CDS:EXON_MRNA:INTRON	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000444440.1:ENST00000485618.1:ENST00000498259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.35511	3.56072	4.76633	0.0445399	6.98999e-4	0.172163	0.00846751
chr3	38141286	38141382	3419189	0	+	0.541667	(0.53,0.59]	chr3	297125	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000481122.5:ENST00000484513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.35511	3.56072	4.76633	0.0445399	6.98999e-4	0.172163	0.00846751
chr6	83393210	83393309	7262772	0	+	0.575758	(0.53,0.59]	chr6	559694	9	EXON_PSEUDO	EXON_PSEUDO	RP11-378G13.2	ENSG00000219951.4	ENST00000403475.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	2.35511	3.56072	4.76633	0.0445399	6.98999e-4	0.172163	0.00846751
chrX	53380102	53380186	19076623	0	-	0.547619	(0.53,0.59]	chrX	1622487	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.35511	3.56072	4.76633	0.0445399	6.98999e-4	0.172163	0.00846751
chr1	21841605	21841673	890819	0	-	0.602941	(0.59,1]	chr1	92312	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	3.33465	3.560705	3.78676	3.60514e-4	2.51362e-4	0.00544284	0.00379143
chr19	5576845	5576938	17436515	0	-	0.505376	(0.49,0.53]	chr19	1455849	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	TINCR:SNRPEP4	ENSG00000223573.7:ENSG00000233270.1	ENST00000646675.1:ENST00000435815.1	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	2	32	2	3.38647	3.560705	3.73494	0.0189345	1.15525e-4	0.0934721	0.00204405
chr9	111934183	111934281	10420390	0	+	0.336735	(0.33,0.36]	chr9	784485	13	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	3.16759	3.560625	3.95366	2.36136e-5	3.77669e-6	5.58343e-4	1.34044e-4
chr13	30427990	30428090	13668497	0	+	0.45	(0.42,0.455]	chr13	1076917	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBE2L5	ENSG00000236444.5	ENST00000638137.1:ENST00000635918.2:ENST00000436446.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.59462	3.56028	4.52594	0.0062772	0.00144145	0.0445415	0.0147046
chr18	77973165	77973265	17184257	0	-	0.35	(0.33,0.36]	chr18	1410246	3	SS3_PROX	SS3_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	4	38	2	3.21877	3.560135	3.9015	9.45896e-5	9.11613e-5	0.00188469	0.00168187
chr9	130886679	130886778	10494298	0	+	0.434343	(0.42,0.455]	chr9	792936	11	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.71736	3.56006	4.40276	0.0017618	3.91972e-4	0.0180053	0.00539186
chr19	48913010	48913103	17367748	0	+	0.569892	(0.53,0.59]	chr19	1442130	1	CDS	CDS:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	166	2	2.33084	3.5600499999999995	4.78926	0.00283321	2.20344e-11	0.0252865	3.52471e-9
chr12	119680624	119680724	13114518	0	+	0.42	(0.39,0.42]	chr12	1023559	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	3.44923	3.5600300000000002	3.67083	0.00105208	1.93844e-5	0.0123035	4.72961e-4
chr22	21592860	21592956	18302889	0	+	0.40625	(0.39,0.42]	chr22	1554181	1	CDS	CDS:EXON_MRNA:INTRON	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	66	2	3.08509	3.56	4.03491	4.0097e-5	1.51324e-6	8.62567e-4	6.2379e-5
chr4	1025734	1025831	4678988	0	+	0.515464	(0.49,0.53]	chr4	387668	5	UTR3	UTR3:EXON_MRNA	FGFRL1	ENSG00000127418.15	ENST00000398484.6:ENST00000510644.6:ENST00000264748.6	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.42954	3.559955	3.69037	0.0226513	0.00105489	0.10505	0.0123035
chr1	89934950	89935049	349113	0	+	0.424242	(0.42,0.455]	chr1	34169	19	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.36247	3.559875	4.75728	0.0462889	5.3817e-4	0.176878	0.00686676
chr19	43769718	43769773	17580575	0	-	0.454545	(0.42,0.455]	chr19	1479105	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000648053.1:ENST00000598836.1:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.36247	3.559875	4.75728	0.0462889	5.3817e-4	0.176878	0.00686676
chr5	55838988	55839082	6585463	0	-	0.43617	(0.42,0.455]	chr5	509808	3	EXON_PSEUDO	EXON_PSEUDO	HNRNPH1P3	ENSG00000248854.1	ENST00000515565.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	2.36247	3.559875	4.75728	0.0462889	5.3817e-4	0.176878	0.00686676
chr6	36927287	36927386	7135783	0	+	0.424242	(0.42,0.455]	chr6	549805	40	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.36247	3.559875	4.75728	0.0462889	5.3817e-4	0.176878	0.00686676
chr7	27458456	27458554	8739179	0	-	0.469388	(0.455,0.49]	chr7	667100	4	EXON_PSEUDO	EXON_PSEUDO	EIF4HP1	ENSG00000233830.2	ENST00000453115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	3.46389	3.55967	3.65545	9.14164e-4	3.50134e-4	0.0110519	0.0049086
chr20	9168894	9168994	17678196	0	+	0.54	(0.53,0.59]	chr20	1494061	18	INTRON	INTRON	PLCB4	ENSG00000101333.18	ENST00000407043.6:ENST00000441846.5:ENST00000378473.9:ENST00000437503.5:ENST00000416836.5	protein_coding	protein_coding	protein_coding	protein_coding	13	200	2	2.90496	3.55948	4.214	1.38229e-5	4.06042e-10	3.94563e-4	4.71888e-8
chr10	128098118	128098215	11745001	0	-	0.42268	(0.42,0.455]	chr10	896070	16	UTR3	UTR3:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.67452	3.5594650000000003	5.44441	0.0264395	8.23077e-6	0.117445	2.56136e-4
chr10	71831251	71831351	11563373	0	-	0.51	(0.49,0.53]	chr10	880016	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	3.23006	3.559465	3.88887	0.00253719	9.98984e-5	0.0233955	0.00180257
chr10	124411972	124412071	11729410	0	-	0.454545	(0.42,0.455]	chr10	895094	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	87	2	2.44756	3.55938	4.6712	9.46189e-4	7.36673e-9	0.0113687	5.97256e-7
chr11	66003866	66003960	11987301	0	+	0.468085	(0.455,0.49]	chr11	921245	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BANF1	ENSG00000175334.8	ENST00000445560.6:ENST00000524628.1:ENST00000312175.7:ENST00000533166.5:ENST00000527348.1:ENST00000528648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	116	2	3.26417	3.559215	3.85426	1.52504e-6	1.03884e-7	6.27665e-5	5.7584e-6
chr6	135218874	135218974	7415106	0	+	0.37	(0.36,0.39]	chr6	568361	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	99	2	2.6862	3.559165	4.43213	8.18712e-5	3.24819e-9	0.00169784	2.93128e-7
chr2	43226315	43226412	2618869	0	-	0.721649	(0.59,1]	chr2	235745	1	UTR5	UTR5:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.04362	3.559075	5.07453	0.036186	0.00117617	0.145024	0.0132131
chr20	45420561	45420616	17801662	0	+	0.490909	(0.49,0.53]	chr20	1505109	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000640649.1:ENST00000638927.1:ENST00000639239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.38097	3.558865	4.73676	0.0425419	3.38109e-7	0.167547	1.5857e-5
chr12	74538702	74538801	12961046	0	+	0.484848	(0.455,0.49]	chr12	1010219	4	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.85172	3.5588249999999997	4.26593	0.010864	0.00372962	0.0643837	0.0302984
chr3	38487394	38487493	3421786	0	+	0.464646	(0.455,0.49]	chr3	297512	42	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.85172	3.5588249999999997	4.26593	0.010864	0.00372962	0.0643837	0.0302984
chr4	55523237	55523337	5432768	0	-	0.48	(0.455,0.49]	chr4	434825	128	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.85172	3.5588249999999997	4.26593	0.010864	0.00372962	0.0643837	0.0302984
chrX	37731336	37731436	18656843	0	+	0.46	(0.455,0.49]	chrX	1591369	30	UTR3	UTR3:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.85172	3.5588249999999997	4.26593	0.010864	0.00372962	0.0643837	0.0302984
chr9	120820838	120820908	10833898	0	-	0.5	(0.49,0.53]	chr9	820475	1	CDS	CDS:EXON_MRNA	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.12684	3.5585899999999997	4.99034	0.0134683	1.6002e-4	0.0744999	0.00286408
chr1	121168540	121168640	1259557	0	-	0.35	(0.33,0.36]	chr1	123392	10	UTR3	UTR3:EXON_MRNA	FAM72B	ENSG00000188610.12	ENST00000369390.7:ENST00000355228.8:ENST00000619376.4:ENST00000471903.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.47163	3.55858	4.64553	0.0129725	6.69086e-4	0.0724783	0.00820018
chr14	73186852	73186920	14394973	0	+	0.352941	(0.33,0.36]	chr14	1124521	1	CDS	CDS:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.47163	3.55858	4.64553	0.0129725	6.69086e-4	0.0724783	0.00820018
chr2	15275734	15275818	2527211	0	-	0.357143	(0.33,0.36]	chr2	227327	4	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.47163	3.55858	4.64553	0.0129725	6.69086e-4	0.0724783	0.00820018
chr2	105360885	105360984	2821366	0	-	0.333333	(0.33,0.36]	chr2	251840	33	UTR3	UTR3:EXON_MRNA	FHL2	ENSG00000115641.19	ENST00000409177.6:ENST00000322142.13:ENST00000393352.7:ENST00000344213.9:ENST00000530340.6:ENST00000393353.7:ENST00000358129.8:ENST00000409807.5:ENST00000408995.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.47163	3.55858	4.64553	0.0129725	6.69086e-4	0.0724783	0.00820018
chr6	111008037	111008137	7331546	0	+	0.36	(0.33,0.36]	chr6	563767	1	CDS	CDS:UTR3:EXON_MRNA	RPF2	ENSG00000197498.13	ENST00000368864.8:ENST00000441448.7:ENST00000607388.1:ENST00000425871.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.47163	3.55858	4.64553	0.0129725	6.69086e-4	0.0724783	0.00820018
chr12	49185109	49185198	13324017	0	-	0.52809	(0.49,0.53]	chr12	1045766	1	CDS	CDS:UTR3:EXON_MRNA	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	3.51228	3.55852	3.60476	4.52633e-4	7.99738e-6	0.00642319	2.28719e-4
chr5	69189573	69189634	6019383	0	+	0.52459	(0.49,0.53]	chr5	471262	1	UTR5	UTR5:EXON_MRNA	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7:ENST00000513575.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	47	2	2.69746	3.5583850000000004	4.41931	0.00380414	3.4941e-6	0.0317723	1.14163e-4
chr12	120214135	120214217	13579824	0	-	0.560976	(0.53,0.59]	chr12	1068836	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9:ENST00000538144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	3.11275	3.5583400000000003	4.00393	0.0108084	0.00407571	0.064368	0.032143
chr17	7017256	7017321	16103416	0	+	0.569231	(0.53,0.59]	chr17	1296051	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNASEK-C17orf49:C17orf49	ENSG00000161939.19:ENSG00000258315.5	ENST00000549775.5:ENST00000547863.5:ENST00000547302.3:ENST00000546495.5:ENST00000546760.5:ENST00000549857.1:ENST00000552402.5:ENST00000439424.6:ENST00000552775.1:ENST00000550038.5:ENST00000547747.1:ENST00000547709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.11275	3.5583400000000003	4.00393	0.0108084	0.00407571	0.064368	0.032143
chr19	5696053	5696111	17437017	0	-	0.586207	(0.53,0.59]	chr19	1456022	1	CDS	CDS:UTR3:EXON_MRNA	LONP1	ENSG00000196365.12	ENST00000360614.8:ENST00000587552.5:ENST00000540670.6:ENST00000593119.5:ENST00000585374.5:ENST00000590558.5:ENST00000590729.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.11275	3.5583400000000003	4.00393	0.0108084	0.00407571	0.064368	0.032143
chr2	62222717	62222817	1845100	0	+	0.57	(0.53,0.59]	chr2	175154	5	CDS	CDS:EXON_MRNA	B3GNT2	ENSG00000170340.11	ENST00000301998.5:ENST00000405767.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	3.11275	3.5583400000000003	4.00393	0.0108084	0.00407571	0.064368	0.032143
chr22	41515766	41515841	18380938	0	+	0.586667	(0.53,0.59]	chr22	1564574	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000478010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.11275	3.5583400000000003	4.00393	0.0108084	0.00407571	0.064368	0.032143
chr11	4091698	4091798	11773990	0	+	0.49	(0.455,0.49]	chr11	900919	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000533977.5:ENST00000526156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.30384	3.558295	3.81275	0.0138827	0.00184955	0.0760883	0.0178046
chr12	123647962	123648044	13127567	0	+	0.47561	(0.455,0.49]	chr12	1025893	1	CDS	CDS:EXON_MRNA:INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537368.5:ENST00000543005.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.30384	3.558295	3.81275	0.0138827	0.00184955	0.0760883	0.0178046
chr2	61214512	61214603	2687661	0	-	0.461538	(0.455,0.49]	chr2	239963	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000476716.5:ENST00000467128.5:ENST00000472689.5:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.30384	3.558295	3.81275	0.0138827	0.00184955	0.0760883	0.0178046
chr2	171745864	171745927	2208054	0	+	0.460317	(0.455,0.49]	chr2	202105	2	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.30384	3.558295	3.81275	0.0138827	0.00184955	0.0760883	0.0178046
chr4	109473094	109473186	5039196	0	+	0.456522	(0.455,0.49]	chr4	409923	2	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.30384	3.558295	3.81275	0.0138827	0.00184955	0.0760883	0.0178046
chr7	128982247	128982324	9060449	0	-	0.467532	(0.455,0.49]	chr7	691803	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.30384	3.558295	3.81275	0.0138827	0.00184955	0.0760883	0.0178046
chr3	128100594	128100669	4440378	0	-	0.48	(0.455,0.49]	chr3	368865	1	CDS	CDS:EXON_MRNA	RUVBL1	ENSG00000175792.12	ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000478892.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	1.96875	3.558245	5.14774	0.0480352	7.45457e-5	0.180552	0.00142165
chr8	100924134	100924228	9976259	0	-	0.457447	(0.455,0.49]	chr8	752736	1	CDS	CDS:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	2.6627	3.55802	4.45334	5.73968e-4	4.89305e-8	0.00781936	3.02248e-6
chr12	53665236	53665313	13340963	0	-	0.61039	(0.59,1]	chr12	1049266	2	UTR3	UTR3:EXON_MRNA:INTRON	ATP5MC2	ENSG00000135390.21	ENST00000550241.1:ENST00000673498.1:ENST00000394349.9:ENST00000552242.5:ENST00000495596.5:ENST00000549164.5:ENST00000338662.6:ENST00000549748.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	441	2	3.45858	3.557985	3.65739	1.22026e-6	4.31791e-8	5.21547e-5	2.7104e-6
chr12	56638174	56638248	13352102	0	-	0.337838	(0.33,0.36]	chr12	1051730	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	50	2	3.3227	3.557925	3.79315	0.00222616	9.26618e-7	0.0211992	3.75253e-5
chr9	131198215	131198315	10496369	0	+	0.6	(0.59,1]	chr9	793351	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	99	2	2.6406	3.557875	4.47515	0.00193045	8.73507e-6	0.0192201	0.00024628300000000003
chr17	42842073	42842173	16230332	0	+	0.46	(0.455,0.49]	chr17	1313600	6	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.35515	3.557815	4.76048	0.0140117	3.99985e-4	0.0767536	0.00588767
chr5	134661118	134661211	6230186	0	+	0.473118	(0.455,0.49]	chr5	485158	1	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.35515	3.557815	4.76048	0.0140117	3.99985e-4	0.0767536	0.00588767
chr11	4092739	4092833	11774001	0	+	0.361702	(0.36,0.39]	chr11	900920	11	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.69035	3.55769	4.42503	0.00133228	0.00123789	0.0144372	0.013161
chr9	130092314	130092381	10488051	0	+	0.41791	(0.39,0.42]	chr9	791935	2	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.784	3.5576499999999998	4.3313	0.00261393	0.00209984	0.0230705	0.0204266
chr6	30652647	30652732	7112032	0	+	0.470588	(0.455,0.49]	chr6	545029	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C6orf136	ENSG00000204564.12	ENST00000293604.10:ENST00000488383.5:ENST00000376473.9:ENST00000463794.1:ENST00000651131.1:ENST00000376471.8:ENST00000446773.6:ENST00000487873.1:ENST00000465699.5:ENST00000467801.2:ENST00000468785.1:ENST00000460172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.9967	3.5576300000000005	4.1185600000000004	0.00650423	2.49433e-5	0.0454205	5.8178e-4
chr8	143992691	143992741	9649811	0	+	0.6	(0.59,1]	chr8	731411	1	CDS	CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000534791.5:ENST00000533044.5:ENST00000527194.5:ENST00000533377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	32	2	3.1277	3.5576049999999997	3.98751	0.0301044	0.00490589	0.129773	0.0366648
chr6	33305187	33305287	7669261	0	-	0.67	(0.59,1]	chr6	587575	3	CDS	CDS:EXON_MRNA:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	296	2	3.35567	3.557545	3.75942	5.28372e-6	5.51675e-7	1.77889e-4	2.4116e-5
chr1	229324055	229324153	1541550	0	-	0.367347	(0.36,0.39]	chr1	154303	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	3.03944	3.55744	4.07544	5.52787e-5	3.61377e-5	0.00112179	8.73633e-4
chr9	112223850	112223950	10802921	0	-	0.42	(0.39,0.42]	chr9	818410	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	3.55361	3.55729	3.56097	6.12149e-4	1.26646e-6	0.00818575	4.89488e-5
chr7	6403016	6403111	8114068	0	+	0.378947	(0.36,0.39]	chr7	620430	7	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	2.67438	3.5572	4.44002	1.20462e-4	2.93008e-6	0.00210079	1.09386e-4
chr21	9810815	9810915	18158534	0	-	0.52	(0.49,0.53]	chr21	1541876	3	SS3_PROX	SS3_PROX:INTRON	LINC01667	ENSG00000280081.4	ENST00000651542.1:ENST00000623554.3:ENST00000623919.1:ENST00000651050.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	25	2	2.60116	3.55714	4.51312	0.0056515	0.00156636	0.0422191	0.0156889
chr3	123933076	123933172	4420459	0	-	0.354167	(0.33,0.36]	chr3	366917	12	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	1.8112	3.55703	5.30286	0.0257865	1.23392e-5	0.116737	3.58359e-4
chr4	56460625	56460723	4848736	0	+	0.469388	(0.455,0.49]	chr4	399473	12	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	53	578	2	3.16967	3.55693	3.94419	2.54497e-9	2.65332e-12	2.58172e-7	5.3757e-10
chr7	116506090	116506159	8475389	0	+	0.492754	(0.49,0.53]	chr7	647295	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAV2	ENSG00000105971.15	ENST00000484871.5:ENST00000485561.5:ENST00000472470.5:ENST00000467035.5:ENST00000477018.5:ENST00000498493.5:ENST00000462876.5:ENST00000222693.5:ENST00000343213.2:ENST00000495841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.26641	3.5569249999999997	4.84744	0.0190546	3.70203e-4	0.093872	0.00515475
chrX	142203518	142203610	19261783	0	-	0.5	(0.49,0.53]	chrX	1636101	7	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.26641	3.5569249999999997	4.84744	0.0190546	3.70203e-4	0.093872	0.00515475
chr6	133272916	133273016	7408738	0	+	0.56	(0.53,0.59]	chr6	567887	242	INTRON	INTRON	EYA4	ENSG00000112319.20	ENST00000452339.6:ENST00000430974.6:ENST00000355286.12:ENST00000355167.8:ENST00000431403.3:ENST00000531901.5:ENST00000525849.6:ENST00000684773.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.94928	3.556555	4.16383	0.00659193	9.80612e-5	0.0454205	0.00177549
chr1	111441229	111441329	1224905	0	-	0.6	(0.59,1]	chr1	119933	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RP11-552M11.4:WDR77	ENSG00000243960.1:ENSG00000116455.14	ENST00000445680.1:ENST00000235090.10:ENST00000449340.1:ENST00000497278.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	30	2	2.76802	3.556445	4.34487	0.0158525	0.0123678	0.0854671	0.0705839
chr17	78164554	78164649	16367660	0	+	0.684211	(0.59,1]	chr17	1329542	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	C17orf99	ENSG00000187997.11	ENST00000340363.9:ENST00000451352.3:ENST00000586029.1:ENST00000586246.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.76802	3.556445	4.34487	0.0158525	0.0123678	0.0854671	0.0705839
chr9	96383634	96383711	10750901	0	-	0.857143	(0.59,1]	chr9	813856	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SLC35D2	ENSG00000130958.13	ENST00000253270.13:ENST00000375259.9:ENST00000482643.2:ENST00000375257.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.76802	3.556445	4.34487	0.0158525	0.0123678	0.0854671	0.0705839
chr11	90282653	90282748	12059325	0	+	0.568421	(0.53,0.59]	chr11	929980	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	50	2	3.18707	3.5564	3.92573	3.55681e-4	8.62301e-5	0.00539248	0.00160749
chr14	102044278	102044299	14495848	0	+	0.47619	(0.455,0.49]	chr14	1133259	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000646418.1:ENST00000642716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.35214	3.55631	4.76048	0.0455621	3.99985e-4	0.168044	0.00588767
chr11	65132308	65132351	12421690	0	-	0.534884	(0.53,0.59]	chr11	963765	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYVN1	ENSG00000162298.19	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000526121.5:ENST00000531018.5:ENST00000532771.5:ENST00000527142.5:ENST00000529207.5:ENST00000528487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.45052	3.556225	4.66193	0.00355092	7.20737e-7	0.0300049	3.019e-5
chr22	39319623	39319649	18513277	0	-	0.692308	(0.59,1]	chr22	1580634	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000465618.5:ENST00000484615.5:ENST00000459859.1	protein_coding	retained_intron	protein_coding	retained_intron:processed_transcript	6	159	2	3.40421	3.55599	3.70777	1.95627e-4	1.69538e-6	0.00334517	6.22555e-5
chr6	27814546	27814640	7649610	0	-	0.670213	(0.59,1]	chr6	582806	2	CDS	CDS:EXON_MRNA	H2AC14	ENSG00000276368.2	ENST00000333151.5	protein_coding	protein_coding	protein_coding	protein_coding	8	202	2	3.48535	3.5559700000000003	3.62659	8.65406e-6	2.89557e-6	2.67793e-4	9.79174e-5
chr11	61300037	61300135	12403882	0	-	0.663265	(0.59,1]	chr11	960172	7	UTR3	UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.91544	3.5559600000000002	5.19648	0.0165875	7.35336e-4	0.0878414	0.00921643
chr1	161518642	161518741	500536	0	+	0.555556	(0.53,0.59]	chr1	54251	6	UTR3	UTR3:EXON_MRNA:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000271450.12:ENST00000467525.5:ENST00000537821.2:ENST00000459885.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	50	2	3.17542	3.55595	3.93648	3.78824e-4	8.06385e-5	0.00525548	0.00167444
chr6	132816460	132816511	7406828	0	+	0.509804	(0.49,0.53]	chr6	567796	1	CDS	CDS:EXON_MRNA	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	93	2	2.99284	3.55594	4.11904	1.30254e-5	7.50378e-7	3.42469e-4	3.48685e-5
chr10	60792147	60792218	11063670	0	+	0.408451	(0.39,0.42]	chr10	841955	1	CDS	CDS:UTR3:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	10	122	2	3.3592	3.555895	3.75259	2.70719e-5	8.4435e-9	6.90257e-4	6.69344e-7
chr6	36924525	36924624	7135755	0	+	0.323232	(0.29,0.33]	chr6	549805	12	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.13212	3.555765	3.97941	0.00551048	5.81801e-5	0.0414592	0.00116944
chr17	1771932	1771993	16083775	0	+	0.606557	(0.59,1]	chr17	1293240	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	SERPINF1	ENSG00000132386.11	ENST00000254722.9:ENST00000576406.5:ENST00000573770.5:ENST00000570820.1:ENST00000573763.1:ENST00000572048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	2.99438	3.55555	4.11672	0.0222273	0.00776449	0.105595	0.050813
chr6	7230692	7230792	7031178	0	+	0.6	(0.59,1]	chr6	538731	18	CDS	CDS:UTR5:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000611109.1	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	2.99438	3.55555	4.11672	0.0222273	0.00776449	0.105595	0.050813
chr9	100116953	100117053	10773713	0	-	0.62	(0.59,1]	chr9	815489	3	EXON_PSEUDO	EXON_PSEUDO	RPS2P35	ENSG00000238172.2	ENST00000443417.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	31	2	2.99438	3.55555	4.11672	0.0222273	0.00776449	0.105595	0.050813
chr2	70662928	70663027	2726142	0	-	0.444444	(0.42,0.455]	chr2	242862	63	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	2.56263	3.555275	4.54792	9.66045e-4	9.19381e-4	0.0115185	0.0104432
chr19	38729802	38729895	17323767	0	+	0.677419	(0.59,1]	chr19	1434384	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000589528.1:ENST00000497637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	3.28861	3.555195	3.82178	0.0028753	2.76767e-4	0.0256141	0.00409634
chr2	222918100	222918155	2406089	0	+	0.345455	(0.33,0.36]	chr2	216571	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000540115.1:ENST00000463813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.7655	3.5551699999999995	4.34484	0.0175892	5.33265e-6	0.0918323	1.63127e-4
chr11	479084	479152	11757214	0	+	0.470588	(0.455,0.49]	chr11	897982	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000525727.5:ENST00000527479.5:ENST00000526878.5:ENST00000530087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.08961	3.5550050000000004	4.0204	0.00736097	0.00445157	0.0490627	0.0340751
chr3	38141575	38141671	3419192	0	+	0.479167	(0.455,0.49]	chr3	297125	4	UTR3	UTR3:EXON_MRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000484513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.08961	3.5550050000000004	4.0204	0.00736097	0.00445157	0.0490627	0.0340751
chr19	48919193	48919286	17367814	0	+	0.645161	(0.59,1]	chr19	1442144	1	CDS	CDS:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5:ENST00000469291.1:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	319	2	3.5099	3.55498	3.60006	8.61438e-7	6.34812e-7	3.91474e-5	2.71648e-5
chr19	5894741	5894841	17437891	0	-	0.63	(0.59,1]	chr19	1456262	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AC024592.12:NDUFA11	ENSG00000267740.5:ENSG00000174886.14	ENST00000592091.5:ENST00000586349.5:ENST00000585661.1:ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000591341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	41	2	2.36593	3.554855	4.74378	0.0141097	0.00312942	0.077233	0.0264364
chr22	19793005	19793094	18296224	0	+	0.505618	(0.49,0.53]	chr22	1552954	9	EXON_PSEUDO	EXON_PSEUDO	AC000089.3	ENSG00000235776.2	ENST00000424559.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	65	2	3.34865	3.5548200000000003	3.76099	2.00194e-4	6.25986e-6	0.0034021	1.87037e-4
chr7	869432	869516	8093868	0	+	0.607143	(0.59,1]	chr7	618480	2	CDS	CDS:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.66274	3.5547250000000004	4.44671	0.00931497	0.00482151	0.0586162	0.0365653
chr10	60791971	60792053	11063665	0	+	0.390244	(0.39,0.42]	chr10	841950	2	CDS	CDS:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	10	110	2	3.45472	3.554595	3.65447	3.0613e-6	1.36028e-7	1.13887e-4	7.30332e-6
chr22	37666739	37666835	18363159	0	+	0.5	(0.49,0.53]	chr22	1561850	10	UTR3	UTR3:EXON_MRNA	RP1-37E16.13:PDXP	ENSG00000285304.1:ENSG00000241360.2	ENST00000451997.6:ENST00000215904.7:ENST00000403251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	1.99044	3.5545600000000004	5.11868	0.0435903	9.66505e-5	0.170594	0.00175267
chr17	40407966	40408045	16538959	0	-	0.417722	(0.39,0.42]	chr17	1354657	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.7778	3.55455	4.3313	0.00209984	2.79638e-4	0.0204266	0.0041355
chr16	28846008	28846106	15907794	0	-	0.714286	(0.59,1]	chr16	1273909	2	CDS	CDS:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	50	2	2.21052	3.554545	4.89857	0.010462	0.00182139	0.063428	0.0176016
chr7	22813096	22813185	8722506	0	-	0.47191	(0.455,0.49]	chr7	665822	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TOMM7	ENSG00000196683.11	ENST00000463284.2:ENST00000405021.7:ENST00000483581.1:ENST00000372879.8:ENST00000358435.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	75	2	3.49489	3.55438	3.61387	2.88949e-5	2.03098e-6	7.23839e-4	7.24882e-5
chr11	126263915	126264015	12645143	0	-	0.57	(0.53,0.59]	chr11	981827	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000532268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.7898	3.5543699999999996	4.31894	0.0128364	7.82085e-6	0.0719798	2.24148e-4
chr7	135926759	135926857	9085548	0	-	0.306122	(0.29,0.33]	chr7	693646	1	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	3.23505	3.55434	3.87363	1.0759e-4	1.85738e-8	0.00207122	1.32897e-6
chr5	154815168	154815265	6315022	0	+	0.546392	(0.53,0.59]	chr5	492515	12	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	3.43955	3.554055	3.66856	3.45609e-6	5.86711e-7	1.13431e-4	2.81396e-5
chr11	32932939	32933039	11899056	0	+	0.42	(0.39,0.42]	chr11	909001	13	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	2.87247	3.55404	4.23561	1.58014e-4	1.16386e-5	0.00261731	3.43116e-4
chr12	103934241	103934287	13056772	0	+	0.5	(0.49,0.53]	chr12	1017313	1	CDS	CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	435	2	2.87785	3.5539199999999997	4.22999	2.9634e-5	1e-12	7.34601e-4	2.25522e-10
chr10	27117575	27117651	11423349	0	-	0.421053	(0.42,0.455]	chr10	870908	1	CDS	CDS:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	3.07985	3.5537850000000004	4.02772	1.37948e-4	4.30844e-5	0.00233981	0.00100091
chr17	68530548	68530647	16337419	0	+	0.323232	(0.29,0.33]	chr17	1325397	2	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.92065	3.553545	4.18644	0.0117842	1.56826e-5	0.0686664	3.99464e-4
chr22	21622752	21622851	18303189	0	+	0.606061	(0.59,1]	chr22	1554195	12	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	162	2	3.07517	3.553545	4.03192	2.50342e-4	7.32268e-7	0.00410438	3.05958e-5
chr19	49719886	49719983	17607169	0	-	0.556701	(0.53,0.59]	chr19	1484152	5	EXON_PSEUDO	EXON_PSEUDO	CTB-33G10.1	ENSG00000243829.1	ENST00000498085.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.54844	3.55352	4.5586	0.00663226	0.00161229	0.0461575	0.0169168
chr20	34280745	34280841	17946662	0	-	0.552083	(0.53,0.59]	chr20	1519947	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP4-785G19.5:AHCY	ENSG00000250917.1:ENSG00000101444.13	ENST00000512005.1:ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	28	2	2.54844	3.55352	4.5586	0.00663226	0.00161229	0.0461575	0.0169168
chr7	139079768	139079863	9102391	0	-	0.568421	(0.53,0.59]	chr7	694570	8	CDS	CDS:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.54844	3.55352	4.5586	0.00663226	0.00161229	0.0461575	0.0169168
chr2	47475188	47475270	1785239	0	+	0.304878	(0.29,0.33]	chr2	172511	3	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	3.20367	3.5534499999999998	3.90323	6.11481e-4	9.15815e-5	0.00818575	0.00168607
chr1	160356599	160356676	496795	0	+	0.519481	(0.49,0.53]	chr1	53505	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000435149.1:ENST00000491390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.60116	3.55331	4.50546	0.0056515	1.89933e-6	0.0422191	6.87959e-5
chr3	113347002	113347102	4358021	0	-	0.5	(0.49,0.53]	chr3	363613	19	INTRON	INTRON	CFAP44	ENSG00000206530.11	ENST00000393845.9:ENST00000490481.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.26641	3.5531300000000003	4.83985	0.0190546	1.50325e-7	0.093872	7.97048e-6
chr2	61885019	61885072	2691505	0	-	0.415094	(0.39,0.42]	chr2	240589	1	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.16612	3.55304	3.93996	0.00841622	4.03393e-4	0.054565	0.00550292
chr2	20308313	20308403	2541239	0	-	0.455556	(0.455,0.49]	chr2	228576	1	CDS	CDS:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5:ENST00000442400.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.46624	3.55301	4.63978	0.0094145	6.94032e-4	0.0592633	0.00876781
chr7	5528082	5528133	8659479	0	-	0.588235	(0.53,0.59]	chr7	662114	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	367	2	3.27879	3.55301	3.82723	2.07011e-8	5.61979e-10	1.58269e-6	6.28815e-8
chr14	23125690	23125789	14529500	0	-	0.494949	(0.49,0.53]	chr14	1138639	5	UTR3	UTR3:EXON_MRNA	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	3.33324	3.5527800000000003	3.77232	0.00162947	1.14615e-6	0.0169972	4.49174e-5
chr18	35990312	35990410	17077734	0	-	0.367347	(0.36,0.39]	chr18	1403036	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000587563.5:ENST00000585879.1:ENST00000399022.9:ENST00000590898.5:ENST00000357384.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	3.33241	3.552715	3.77302	0.0162599	0.00193631	0.0866586	0.0192272
chr7	130202597	130202663	9063518	0	-	0.348485	(0.33,0.36]	chr7	692195	2	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000471985.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.27335	3.552665	4.83198	0.00837768	1.88689e-4	0.0541213	0.0032588
chr11	118398617	118398716	12157876	0	+	0.373737	(0.36,0.39]	chr11	936937	23	UTR3	UTR3:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.38564	3.5524500000000003	4.71926	0.0476159	5.29682e-4	0.17993	0.006804
chr10	102148371	102148446	11226532	0	+	0.493333	(0.49,0.53]	chr10	854803	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPRC1	ENSG00000148840.11	ENST00000413464.6:ENST00000278070.7:ENST00000370012.1:ENST00000489648.5:ENST00000495914.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.8671	3.552345	4.23759	0.0100489	0.00436474	0.0623334	0.0335517
chr11	34136641	34136708	11905859	0	+	0.522388	(0.49,0.53]	chr11	909701	1	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.8671	3.552345	4.23759	0.0100489	0.00436474	0.0623334	0.0335517
chr2	128115123	128115220	2059718	0	+	0.494845	(0.49,0.53]	chr2	193194	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.8671	3.552345	4.23759	0.0100489	0.00436474	0.0623334	0.0335517
chr3	184363492	184363565	3949529	0	+	0.493151	(0.49,0.53]	chr3	332553	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	POLR2H	ENSG00000163882.9	ENST00000456318.5:ENST00000412877.1:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.8671	3.552345	4.23759	0.0100489	0.00436474	0.0623334	0.0335517
chr7	16462547	16462647	8702271	0	-	0.52	(0.49,0.53]	chr7	664604	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	CRPPA:SOSTDC1	ENSG00000214960.11:ENSG00000171243.8	ENST00000675257.1:ENST00000674759.1:ENST00000307068.5:ENST00000396652.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.8671	3.552345	4.23759	0.0100489	0.00436474	0.0623334	0.0335517
chr17	48621445	48621542	16578557	0	-	0.556701	(0.53,0.59]	chr17	1361937	4	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	3.1234	3.552275	3.98115	0.00390623	6.28226e-5	0.0322851	0.00124286
chr6	159798276	159798352	7527037	0	+	0.394737	(0.39,0.42]	chr6	574573	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPL18	ENSG00000112110.10	ENST00000476826.5:ENST00000367034.5:ENST00000480842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	138	2	3.37198	3.55225	3.73252	2.75662e-7	2.5756e-8	1.49016e-5	1.7523e-6
chr1	109369529	109369589	1220051	0	-	0.5	(0.49,0.53]	chr1	119042	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5:ENST00000633956.1:ENST00000483508.5:ENST00000495777.5:ENST00000471996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.72252	3.55222	4.38192	0.0161474	0.00259709	0.0860154	0.0229695
chr17	2325303	2325390	16405962	0	-	0.505747	(0.49,0.53]	chr17	1335332	1	CDS	CDS:UTR3:EXON_MRNA	TSR1	ENSG00000167721.11	ENST00000301364.10:ENST00000575049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.72252	3.55222	4.38192	0.0161474	0.00259709	0.0860154	0.0229695
chr19	16551510	16551609	17491572	0	-	0.50505	(0.49,0.53]	chr19	1466498	18	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000593812.1:ENST00000595753.6:ENST00000652421.1:ENST00000409648.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.72252	3.55222	4.38192	0.0161474	0.00259709	0.0860154	0.0229695
chr2	33315143	33315206	1721991	0	+	0.492063	(0.49,0.53]	chr2	168774	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000415140.6:ENST00000422669.1:ENST00000489740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.72252	3.55222	4.38192	0.0161474	0.00259709	0.0860154	0.0229695
chr3	37025636	37025697	3410872	0	+	0.508197	(0.49,0.53]	chr3	296319	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5:ENST00000673889.1:ENST00000616768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.72252	3.55222	4.38192	0.0161474	0.00259709	0.0860154	0.0229695
chrX	12809233	12809332	18584266	0	+	0.525253	(0.49,0.53]	chrX	1587236	1	CDS	CDS:EXON_MRNA	PRPS2	ENSG00000101911.13	ENST00000380663.7:ENST00000398491.6:ENST00000380668.10:ENST00000489404.5:ENST00000461630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.72252	3.55222	4.38192	0.0161474	0.00259709	0.0860154	0.0229695
chr1	241519622	241519722	1577602	0	-	0.73	(0.59,1]	chr1	157560	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	3.53997	3.551945	3.56392	8.86707e-4	9.75839e-5	0.0101815	0.00193292
chr5	139626897	139626993	6250569	0	+	0.4375	(0.42,0.455]	chr5	487112	2	UTR3	UTR3:EXON_MRNA	UBE2D2	ENSG00000131508.16	ENST00000398733.8:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	48	2	2.90284	3.551665	4.20049	4.27478e-4	1.49765e-5	0.00618684	3.83096e-4
chr1	28500070	28500168	117072	0	+	0.306122	(0.29,0.33]	chr1	14288	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHACTR4	ENSG00000204138.13	ENST00000373839.8:ENST00000632964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	3.48001	3.551565	3.62312	0.0222826	0.00126219	0.104593	0.013837
chr1	109324898	109324993	1219586	0	-	0.421053	(0.42,0.455]	chr1	118968	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	2.70611	3.5514349999999997	4.39676	0.00397496	8.14648e-8	0.0322851	4.6939e-6
chr1	207359545	207359607	686660	0	+	0.532258	(0.53,0.59]	chr1	69542	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CD55	ENSG00000196352.16	ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000618707.2:ENST00000635614.2:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.87264	3.55143	4.23022	0.00168899	1.38676e-5	0.0175515	3.5918e-4
chr1	156317414	156317480	1314111	0	-	0.5	(0.49,0.53]	chr1	133427	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	2.81492	3.551365	4.28781	6.31846e-4	2.05323e-7	0.00837621	1.04036e-5
chr7	135618411	135618507	8553027	0	+	0.4375	(0.42,0.455]	chr7	652832	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.55474	3.55133	4.54792	0.00228741	9.66045e-4	0.0210026	0.0115185
chrX	49533940	49534001	18694731	0	+	0.57377	(0.53,0.59]	chrX	1594897	2	CDS	CDS:EXON_MRNA	GAGE12C	ENSG00000237671.3	ENST00000420398.2	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	3.47991	3.55131	3.62271	6.7738e-5	2.78569e-5	0.0013157	7.05707e-4
chr16	30084962	30085062	15628546	0	+	0.56	(0.53,0.59]	chr16	1239838	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000279387.12:ENST00000563200.5:ENST00000566749.5:ENST00000562664.5:ENST00000627746.2:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	1.90953	3.551205	5.19288	0.0517711	9.22873e-5	0.193577	0.0016906
chr18	31542685	31542768	16809125	0	+	0.578313	(0.53,0.59]	chr18	1386474	3	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	1.90953	3.551205	5.19288	0.0517711	9.22873e-5	0.193577	0.0016906
chr18	68700404	68700461	17164721	0	-	0.368421	(0.36,0.39]	chr18	1408824	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX3	ENSG00000166479.10	ENST00000299608.7:ENST00000564631.5:ENST00000569053.5:ENST00000443099.6:ENST00000562706.5:ENST00000565918.5:ENST00000564008.5:ENST00000580785.1:ENST00000569982.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.63521	3.5511749999999997	4.46714	0.00633242	0.00155822	0.0446708	0.0156889
chr2	226998915	226999015	2412620	0	+	0.49	(0.455,0.49]	chr2	216865	35	UTR3	UTR3:EXON_MRNA	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.9967	3.551025	4.10535	0.00650423	0.0064531	0.0454205	0.0450905
chr4	107644980	107645070	5583586	0	-	0.466667	(0.455,0.49]	chr4	445623	3	CDS	CDS:EXON_MRNA	PAPSS1	ENSG00000138801.9	ENST00000265174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.9967	3.551025	4.10535	0.00650423	0.0064531	0.0454205	0.0450905
chr1	2399414	2399514	7572	0	+	0.42	(0.39,0.42]	chr1	1704	1	CDS	CDS:EXON_MRNA:INTRON	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000378512.5:ENST00000443438.5:ENST00000488353.2	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	3.52881	3.550875	3.57294	5.61812e-5	3.67751e-5	0.00124771	8.00584e-4
chr2	112659389	112659482	2001881	0	+	0.462366	(0.455,0.49]	chr2	190042	3	CDS	CDS:UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000433924.5:ENST00000413135.1:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	3.24013	3.5508300000000004	3.86153	5.30989e-5	5.21014e-6	0.00118379	1.60138e-4
chr3	48468267	48468361	4167341	0	-	0.617021	(0.59,1]	chr3	348993	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.38614	3.55062	4.7151	0.0128707	0.00412279	0.0725185	0.0325842
chrX	78121343	78121442	18747101	0	+	0.353535	(0.33,0.36]	chrX	1599834	28	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.41541	3.5505050000000002	4.6856	0.00212038	3.92435e-4	0.0198025	0.00583618
chr1	204409586	204409682	1457473	0	-	0.46875	(0.455,0.49]	chr1	146827	2	CDS	CDS:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.69053	3.55047	4.41041	0.0182983	0.00218771	0.0925808	0.0202707
chr2	26779482	26779579	1688722	0	+	0.474227	(0.455,0.49]	chr2	165134	11	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F6:CENPA	ENSG00000213699.9:ENSG00000115163.15	ENST00000344420.10:ENST00000429494.5:ENST00000475662.5:ENST00000414029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.69053	3.55047	4.41041	0.0182983	0.00218771	0.0925808	0.0202707
chr20	53576794	53576891	18015909	0	-	0.474227	(0.455,0.49]	chr20	1526885	12	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.69053	3.55047	4.41041	0.0182983	0.00218771	0.0925808	0.0202707
chr3	119434821	119434882	4399097	0	-	0.459016	(0.455,0.49]	chr3	364709	2	CDS	CDS:UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000473684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.69053	3.55047	4.41041	0.0182983	0.00218771	0.0925808	0.0202707
chr8	9777424	9777523	9192934	0	+	0.464646	(0.455,0.49]	chr8	702351	8	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.69053	3.55047	4.41041	0.0182983	0.00218771	0.0925808	0.0202707
chr7	77627383	77627480	8350215	0	+	0.42268	(0.42,0.455]	chr7	637034	8	CDS	CDS:EXON_MRNA	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000407343.3	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	3.38704	3.550345	3.71365	2.63375e-4	1.91222e-5	0.00427022	4.67807e-4
chr8	144084721	144084798	9650262	0	+	0.597403	(0.59,1]	chr8	731493	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GPAA1	ENSG00000197858.11	ENST00000525087.5:ENST00000355091.9:ENST00000361036.10:ENST00000527144.5:ENST00000526233.5:ENST00000527653.1:ENST00000529638.1:ENST00000531593.1:ENST00000530796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	3.4902	3.550215	3.61023	0.00130379	7.25496e-4	0.0142445	0.00869086
chr17	50382598	50382695	16585119	0	-	0.391753	(0.39,0.42]	chr17	1363112	15	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	11	123	2	3.36789	3.550205	3.73252	1.84581e-6	2.5756e-8	7.41993e-5	1.7523e-6
chr12	14942128	14942226	13221740	0	-	0.428571	(0.42,0.455]	chr12	1036862	2	UTR3	UTR3:EXON_MRNA	ARHGDIB	ENSG00000111348.9	ENST00000228945.9:ENST00000536592.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.19078	3.549995	3.90921	0.0121657	0.00310864	0.0701019	0.0274272
chr9	32558909	32558954	10629117	0	-	0.355556	(0.33,0.36]	chr9	803157	1	CDS	CDS:EXON_MRNA:INTRON	NDUFB6	ENSG00000165264.11	ENST00000379847.8:ENST00000366466.5:ENST00000350021.2	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.97157	3.549985	4.1284	0.00407303	2.7996e-4	0.0324137	0.00413887
chr20	5117469	5117566	17887809	0	-	0.381443	(0.36,0.39]	chr20	1514083	1	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.85784	3.5498899999999995	4.24194	0.00276729	0.00191736	0.0247437	0.0183299
chr7	150951447	150951544	9128671	0	-	0.536082	(0.53,0.59]	chr7	697474	1	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2:ENST00000683359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	154	2	3.05264	3.5496749999999997	4.04671	1.96889e-5	6.26392e-9	5.29277e-4	5.16133e-7
chr6	30725252	30725347	7112231	0	+	0.357895	(0.33,0.36]	chr6	545067	10	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	69	569	2	3.33091	3.549645	3.76838	3.80078e-10	1e-12	4.45273e-8	2.46312e-10
chr7	97853137	97853215	8940616	0	-	0.435897	(0.42,0.455]	chr7	682233	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	55	2	3.52659	3.5494250000000003	3.57226	6.87022e-4	5.15583e-6	0.00876781	1.58804e-4
chr22	20084307	20084405	18297109	0	+	0.520408	(0.49,0.53]	chr22	1553112	33	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.78962	3.5492	4.30878	0.0129044	7.12421e-6	0.0725185	2.28404e-4
chr8	23564807	23564907	9230641	0	+	0.44	(0.42,0.455]	chr8	706543	212	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	87	2	2.6994	3.5491699999999997	4.39894	2.18223e-5	3.61951e-6	5.2054e-4	1.29307e-4
chr11	61314046	61314117	12404040	0	-	0.521127	(0.49,0.53]	chr11	960220	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	3.02891	3.5491650000000003	4.06942	8.23332e-4	3.44689e-5	0.0102121	7.57659e-4
chr12	64737055	64737107	13378971	0	-	0.384615	(0.36,0.39]	chr12	1054225	2	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000541781.5:ENST00000540196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.63115	3.5491449999999998	4.46714	0.0245975	0.00155822	0.114841	0.0156889
chr14	22771656	22771755	14174789	0	+	0.383838	(0.36,0.39]	chr14	1110340	2	UTR3	UTR3:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.63115	3.5491449999999998	4.46714	0.0245975	0.00155822	0.114841	0.0156889
chr17	7243590	7243680	16429114	0	-	0.366667	(0.36,0.39]	chr17	1339335	1	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2545G14.7:CTDNEP1	ENSG00000262526.2:ENSG00000175826.12	ENST00000570760.2:ENST00000574322.6:ENST00000570828.5:ENST00000573600.5:ENST00000574205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.63115	3.5491449999999998	4.46714	0.0245975	0.00155822	0.114841	0.0156889
chr2	215338778	215338842	2377176	0	+	0.375	(0.36,0.39]	chr2	213558	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000446622.5:ENST00000426233.1:ENST00000479093.5:ENST00000467388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.63115	3.5491449999999998	4.46714	0.0245975	0.00155822	0.114841	0.0156889
chr9	35450727	35450824	10245335	0	+	0.360825	(0.36,0.39]	chr9	770617	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	ATP8B5P	ENSG00000179766.19	ENST00000329395.12:ENST00000430846.5:ENST00000439972.6:ENST00000650605.1:ENST00000423138.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	16	2	2.63115	3.5491449999999998	4.46714	0.0245975	0.00155822	0.114841	0.0156889
chr3	43577166	43577261	4145660	0	-	0.410526	(0.39,0.42]	chr3	346463	6	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.94917	3.549015	4.14886	0.00415881	0.00121791	0.0325842	0.0130188
chr22	41528801	41528895	18381094	0	+	0.37234	(0.36,0.39]	chr22	1564637	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	31	2	1.66365	3.5488999999999997	5.43415	0.0345996	1.15393e-5	0.143631	3.09736e-4
chrX	19355348	19355426	18604907	0	+	0.384615	(0.36,0.39]	chrX	1589038	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000479146.1:ENST00000481733.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	1.89391	3.54861	5.20331	0.0121625	2.53222e-5	0.0701019	6.51851e-4
chr22	42079690	42079768	18385019	0	+	0.794872	(0.59,1]	chr22	1565282	1	UTR5	UTR5:EXON_MRNA	SMDT1	ENSG00000183172.9	ENST00000422252.1:ENST00000331479.4:ENST00000484235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	1.9603	3.5485450000000003	5.13679	0.0141758	9.28022e-4	0.0776158	0.0111748
chr19	53874691	53874788	17388671	0	+	0.360825	(0.36,0.39]	chr19	1446783	3	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000421337.6:ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.00115	3.5484	4.09565	0.0012486	2.81403e-5	0.0137762	6.42183e-4
chrX	3929471	3929570	18933087	0	-	0.373737	(0.36,0.39]	chrX	1613536	89	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	3	36	2	3.00115	3.5484	4.09565	0.0012486	2.81403e-5	0.0137762	6.42183e-4
chr11	68688013	68688100	12001133	0	+	0.574713	(0.53,0.59]	chr11	923872	1	CDS	CDS:EXON_MRNA	GAL	ENSG00000069482.7	ENST00000265643.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.78899	3.548375	4.30776	0.00407289	0.00245784	0.0324137	0.0221765
chr13	95188452	95188542	14111072	0	-	0.566667	(0.53,0.59]	chr13	1104436	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	3.21941	3.548355	3.8773	0.00266171	5.13471e-6	0.0240332	1.58468e-4
chr7	100097613	100097679	8949671	0	-	0.606061	(0.59,1]	chr7	683535	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	125	2	2.32275	3.548285	4.77382	0.00203416	1.80224e-6	0.0192213	7.28545e-5
chr14	35317248	35317306	14225637	0	+	0.431034	(0.42,0.455]	chr14	1113853	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554961.5:ENST00000553809.5:ENST00000555764.5:ENST00000556506.1:ENST00000556221.1:ENST00000554457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.57051	3.5482250000000004	4.52594	0.0265466	0.00144145	0.120071	0.0147046
chr16	23468885	23468940	15894393	0	-	0.454545	(0.42,0.455]	chr16	1272103	1	CDS	CDS:EXON_MRNA:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000568922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.57051	3.5482250000000004	4.52594	0.0265466	0.00144145	0.120071	0.0147046
chr19	57291366	57291461	17405773	0	+	0.442105	(0.42,0.455]	chr19	1450090	8	CDS	CDS:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.57051	3.5482250000000004	4.52594	0.0265466	0.00144145	0.120071	0.0147046
chr20	2985866	2985966	17655100	0	+	0.45	(0.42,0.455]	chr20	1492438	103	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.57051	3.5482250000000004	4.52594	0.0265466	0.00144145	0.120071	0.0147046
chr1	219973237	219973317	1510711	0	-	0.425	(0.42,0.455]	chr1	150970	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	3.4231	3.54803	3.67296	0.00112541	2.43592e-6	0.0128481	8.48998e-5
chr15	34230001	34230078	14860517	0	+	0.25974	[0,0.29]	chr15	1167014	3	UTR3	UTR3:EXON_MRNA	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000558205.5:ENST00000561246.1:ENST00000560947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.79062	3.5478750000000003	4.30513	0.00169679	7.08235e-6	0.01759	2.0848e-4
chr1	196737567	196737660	641465	0	+	0.408602	(0.39,0.42]	chr1	64510	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5:ENST00000470918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.01677	3.547645	5.07852	0.0235818	1.02164e-4	0.111323	0.00183311
chr1	36324779	36324878	141948	0	+	0.373737	(0.36,0.39]	chr1	17673	38	UTR3	UTR3:EXON_MRNA:INTRON	SH3D21	ENSG00000214193.11	ENST00000505871.7:ENST00000480549.6:ENST00000672976.1:ENST00000373137.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.06292	3.54756	4.0322	0.00588589	0.00499846	0.0427941	0.0370021
chr15	34884594	34884664	15206921	0	-	0.385714	(0.36,0.39]	chr15	1197306	2	CDS	CDS:UTR3:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	3.06292	3.54756	4.0322	0.00588589	0.00499846	0.0427941	0.0370021
chr18	49331934	49332006	17118151	0	-	0.388889	(0.36,0.39]	chr18	1405440	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5:ENST00000578396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.06292	3.54756	4.0322	0.00588589	0.00499846	0.0427941	0.0370021
chr2	37101498	37101598	2597028	0	-	0.38	(0.36,0.39]	chr2	233829	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	3.06292	3.54756	4.0322	0.00588589	0.00499846	0.0427941	0.0370021
chr20	38090173	38090273	17782058	0	+	0.39	(0.36,0.39]	chr20	1502505	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	3.06292	3.54756	4.0322	0.00588589	0.00499846	0.0427941	0.0370021
chr4	22727854	22727950	5356443	0	-	0.385417	(0.36,0.39]	chr4	429643	6	EXON_PSEUDO	EXON_PSEUDO	CDC42P6	ENSG00000237350.1	ENST00000421246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	3.06292	3.54756	4.0322	0.00588589	0.00499846	0.0427941	0.0370021
chr11	2396677	2396777	11764979	0	+	0.69	(0.59,1]	chr11	900177	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000527343.5:ENST00000464784.6:ENST00000381036.7:ENST00000492252.5:ENST00000526072.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	3.09455	3.5472599999999996	3.99997	7.92671e-4	1.30803e-4	0.00933379	0.00243846
chr9	92223345	92223417	10736845	0	-	0.416667	(0.39,0.42]	chr9	812230	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	43	2	2.09048	3.5471950000000003	5.00391	0.00224175	9.12714e-5	0.0207345	0.00182992
chr5	95788761	95788811	6108440	0	+	0.42	(0.39,0.42]	chr5	478263	1	CDS	CDS:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1:ENST00000511558.1:ENST00000503737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	2.31773	3.5470450000000002	4.77636	0.00382583	2.28159e-7	0.0319415	1.13101e-5
chr11	67398788	67398856	12427594	0	-	0.529412	(0.49,0.53]	chr11	965291	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.15207	3.54692	3.94177	0.0104929	0.00347189	0.063428	0.0286293
chr14	77512283	77512383	14717359	0	-	0.5	(0.49,0.53]	chr14	1153349	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7:ENST00000556607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.15207	3.54692	3.94177	0.0104929	0.00347189	0.063428	0.0286293
chr19	40441396	40441489	17566446	0	-	0.526882	(0.49,0.53]	chr19	1476366	7	UTR3	UTR3:EXON_MRNA	SERTAD3	ENSG00000167565.13	ENST00000322354.4:ENST00000392028.8	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.15207	3.54692	3.94177	0.0104929	0.00347189	0.063428	0.0286293
chr2	54254724	54254821	2665245	0	-	0.494845	(0.49,0.53]	chr2	238379	17	UTR3	UTR3:EXON_MRNA	TSPYL6	ENSG00000178021.11	ENST00000317802.9	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.15207	3.54692	3.94177	0.0104929	0.00347189	0.063428	0.0286293
chr6	89084292	89084388	7271493	0	+	0.21875	[0,0.29]	chr6	560638	2	UTR3	UTR3:EXON_MRNA	PNRC1	ENSG00000146278.11	ENST00000336032.4:ENST00000369472.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.80134	3.5469	4.29246	0.0049344	0.00254021	0.0379087	0.0227257
chr7	130201929	130202010	9063510	0	-	0.530864	(0.53,0.59]	chr7	692191	2	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000471985.4	protein_coding	protein_coding	protein_coding	protein_coding	11	162	2	3.08947	3.54688	4.00429	6.8295e-6	9.22869e-9	2.21368e-4	7.24673e-7
chr1	21881338	21881420	891294	0	-	0.609756	(0.59,1]	chr1	92561	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.5215	3.54671	4.57192	0.032241	4.93335e-6	0.135671	1.5336e-4
chr14	22924962	22925046	14527940	0	-	0.511905	(0.49,0.53]	chr14	1138154	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000553502.5:ENST00000555530.5:ENST00000556043.5:ENST00000553550.5:ENST00000554716.5:ENST00000553787.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.41364	3.54668	4.67972	0.0112538	6.94757e-4	0.0665375	0.00876781
chr10	45073049	45073145	11465643	0	-	0.364583	(0.36,0.39]	chr10	874294	16	INTRON	INTRON	RP11-285G1.15:CEP164P1	ENSG00000277757.4:ENSG00000226937.9	ENST00000602156.5:ENST00000599308.3:ENST00000625472.1:ENST00000608660.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript	3	32	2	3.06114	3.5466699999999998	4.0322	0.00588589	1.59276e-4	0.0427941	0.00263091
chr1	21851621	21851697	890940	0	-	0.671053	(0.59,1]	chr1	92376	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	111	2	2.59234	3.54615	4.49996	0.00110395	7.55563e-6	0.0127339	2.18445e-4
chr14	23137920	23137971	14529630	0	-	0.529412	(0.49,0.53]	chr14	1138668	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4:ENST00000528806.5:ENST00000528186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.15044	3.546105	3.94177	0.0104929	4.32676e-4	0.063428	0.00583708
chr9	97930825	97930924	10759659	0	-	0.373737	(0.36,0.39]	chr9	814691	9	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	16	162	2	3.48374	3.5460450000000003	3.60835	2.68682e-7	4.07475e-9	1.46147e-5	3.56203e-7
chr2	26278613	26278707	1686304	0	+	0.489362	(0.455,0.49]	chr2	164844	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	3.3605	3.54596	3.73142	0.00147278	2.35261e-4	0.0157578	0.00356397
chr1	51399031	51399098	1014689	0	-	0.447761	(0.42,0.455]	chr1	104999	1	CDS	CDS:EXON_MRNA	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6:ENST00000486505.5:ENST00000478657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	2.33282	3.545905	4.75899	0.00677333	2.77134e-7	0.0462932	1.3349e-5
chr10	73379878	73379954	11571446	0	-	0.434211	(0.42,0.455]	chr10	880869	1	CDS	CDS:EXON_MRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.68905	3.545905	4.40276	0.0017618	0.00119301	0.0180053	0.0128249
chr7	131242832	131242913	8533001	0	+	0.444444	(0.42,0.455]	chr7	651592	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	MKLN1:AC009362.2	ENSG00000128585.18:ENSG00000233287.1	ENST00000421797.6:ENST00000416992.6:ENST00000427253.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	31	2	2.68905	3.545905	4.40276	0.0017618	0.00119301	0.0180053	0.0128249
chr7	135645531	135645596	8553314	0	+	0.446154	(0.42,0.455]	chr7	652903	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5:ENST00000490439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.68905	3.545905	4.40276	0.0017618	0.00119301	0.0180053	0.0128249
chr14	102018511	102018542	14495536	0	+	0.580645	(0.53,0.59]	chr14	1133132	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.7898	3.5458749999999997	4.30195	0.0128364	0.00421989	0.0719798	0.0328662
chr15	64740260	64740352	15341817	0	-	0.554348	(0.53,0.59]	chr15	1211120	5	UTR3	UTR3:EXON_MRNA	RBPMS2	ENSG00000166831.9	ENST00000300069.5:ENST00000560606.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.7898	3.5458749999999997	4.30195	0.0128364	0.00421989	0.0719798	0.0328662
chr15	74850592	74850673	15375942	0	-	0.555556	(0.53,0.59]	chr15	1215490	2	CDS	CDS:EXON_MRNA:INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5:ENST00000569904.5:ENST00000567638.1:ENST00000565345.5:ENST00000562363.5:ENST00000564529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.7898	3.5458749999999997	4.30195	0.0128364	0.00421989	0.0719798	0.0328662
chr6	159762985	159763053	7526774	0	+	0.544118	(0.53,0.59]	chr6	574513	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000467951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.7898	3.5458749999999997	4.30195	0.0128364	0.00421989	0.0719798	0.0328662
chr1	3628888	3628984	13221	0	+	0.552083	(0.53,0.59]	chr1	2228	4	UTR3	UTR3:EXON_MRNA	TPRG1L	ENSG00000158109.15	ENST00000378344.7:ENST00000344579.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.65894	3.545865	4.43279	0.0193255	0.0026472	0.0943643	0.0231864
chr12	56143227	56143280	12898424	0	+	0.566038	(0.53,0.59]	chr12	1004309	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.65894	3.545865	4.43279	0.0193255	0.0026472	0.0943643	0.0231864
chr19	10920155	10920245	17228507	0	+	0.588889	(0.53,0.59]	chr19	1419241	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586508.1:ENST00000586298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.65894	3.545865	4.43279	0.0193255	0.0026472	0.0943643	0.0231864
chrX	53595186	53595258	19077846	0	-	0.513889	(0.49,0.53]	chrX	1622909	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	67	2	3.28098	3.545485	3.80999	3.89192e-5	7.46851e-6	8.42006e-4	2.37258e-4
chr2	38295701	38295798	2602684	0	-	0.329897	(0.29,0.33]	chr2	234394	19	UTR3	UTR3:EXON_MRNA	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.67277	3.545445	4.41812	0.0255386	0.00162106	0.117089	0.0161179
chr8	105351291	105351391	9542847	0	+	0.31	(0.29,0.33]	chr8	724712	312	INTRON	INTRON	ZFPM2	ENSG00000169946.14	ENST00000518180.1:ENST00000407775.7:ENST00000520492.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.67277	3.545445	4.41812	0.0255386	0.00162106	0.117089	0.0161179
chr8	124539186	124539286	9593427	0	+	0.6	(0.59,1]	chr8	727750	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000518008.5:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	1.67735	3.5452999999999997	5.41325	0.0534288	3.01546e-4	0.184995	0.00472028
chr21	33907340	33907426	18224300	0	-	0.511628	(0.49,0.53]	chr21	1546656	1	CDS	CDS:UTR3:EXON_MRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	163	2	3.17533	3.5452500000000002	3.91517	1.50674e-6	5.10428e-9	6.2197e-5	4.32441e-7
chr5	37333462	37333547	6540389	0	-	0.423529	(0.42,0.455]	chr5	506624	1	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	3.35491	3.545205	3.7355	1.39104e-4	1.29688e-5	0.00235518	3.73168e-4
chr19	8488690	8488754	17220865	0	+	0.5625	(0.53,0.59]	chr19	1417706	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	2.22207	3.5451499999999996	4.86823	0.00910511	4.35895e-4	0.0576716	0.00623608
chr13	71675227	71675307	13778207	0	+	0.45	(0.42,0.455]	chr13	1084198	3	EXON_PSEUDO	EXON_PSEUDO	H3P36	ENSG00000236534.1	ENST00000440551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	27	2	2.33282	3.54505	4.75728	0.00677333	5.3817e-4	0.0462932	0.00686676
chr6	27133464	27133560	7104129	0	+	0.4375	(0.42,0.455]	chr6	543285	1	UTR3	UTR3:EXON_MRNA	H2AC11	ENSG00000196787.3	ENST00000359193.3	protein_coding	protein_coding	protein_coding	protein_coding	9	113	2	2.94228	3.544955	4.14763	4.33801e-5	7.54482e-9	0.00100722	6.10165e-7
chr13	99537800	99537863	13865393	0	+	0.444444	(0.42,0.455]	chr13	1087170	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	3.0301	3.54482	4.05954	0.00617886	1.85605e-4	0.0439741	0.00297242
chr6	149379053	149379146	7480754	0	+	0.483871	(0.455,0.49]	chr6	571632	3	CDS	CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.06914	3.54477	4.0204	0.00736097	6.6649e-4	0.0490627	0.00820018
chr1	151266519	151266587	471389	0	+	0.544118	(0.53,0.59]	chr1	48108	1	CDS	CDS:UTR3:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000476855.5:ENST00000445776.1:ENST00000427779.5:ENST00000470396.1:ENST00000453615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.5393	3.5446549999999997	3.55001	6.46017e-4	6.11776e-4	0.00818575	0.00799743
chr12	55971525	55971625	12896936	0	+	0.57	(0.53,0.59]	chr12	1003804	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK2	ENSG00000123374.11	ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000556656.5:ENST00000554545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	3.5393	3.5446549999999997	3.55001	6.46017e-4	6.11776e-4	0.00818575	0.00799743
chrX	113634898	113634998	19178892	0	-	0.41	(0.39,0.42]	chrX	1630941	187	EXON_LNCRNA	EXON_LNCRNA:INTRON	XACT	ENSG00000241743.4	ENST00000468762.3:ENST00000674361.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.99507	3.54463	4.09419	0.00637824	2.95839e-5	0.0449937	7.34143e-4
chr1	25816680	25816776	107282	0	+	0.385417	(0.36,0.39]	chr1	12525	11	UTR3	UTR3:EXON_MRNA:INTRON	SELENON:RP1-317E23.6	ENSG00000162430.18:ENSG00000255054.3	ENST00000361547.7:ENST00000374315.1:ENST00000559265.1:ENST00000527604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.10159	3.54451	4.98743	0.00841765	8.82225e-5	0.0543584	0.00178337
chr16	87403393	87403492	15801160	0	+	0.363636	(0.36,0.39]	chr16	1257525	4	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.10159	3.54451	4.98743	0.00841765	8.82225e-5	0.0543584	0.00178337
chr5	10290604	10290662	6447004	0	-	0.431034	(0.42,0.455]	chr5	502189	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	3.31161	3.544135	3.77666	0.00186138	1.85215e-4	0.018635	0.00296795
chr6	41935758	41935850	7701868	0	-	0.641304	(0.59,1]	chr6	590673	10	UTR3	UTR3:EXON_MRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	3.01432	3.544105	4.07389	0.00121259	7.9402e-5	0.0135383	0.00150391
chr1	150558548	150558624	468507	0	+	0.684211	(0.59,1]	chr1	47488	2	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.97139	3.544055	4.11672	0.0222273	3.85356e-4	0.105595	0.00531819
chr21	45493162	45493225	18145742	0	+	0.68254	(0.59,1]	chr21	1539789	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	61	2	2.97139	3.544055	4.11672	0.0222273	3.85356e-4	0.105595	0.00531819
chr22	30973014	30973093	18344815	0	+	0.506329	(0.49,0.53]	chr22	1559164	3	EXON_SMALL	EXON_SMALL:UTR3:EXON_MRNA:EXON_LNCRNA	TUG1:ENSG10010138848.1	ENSG00000253352.10:ENSG00000276965.1	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000566220.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1:ENST00000616187.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:processed_transcript	2	34	2	3.33324	3.54392	3.7546	0.00162947	2.09468e-4	0.0169972	0.00327655
chr7	103594406	103594492	8964229	0	-	0.593023	(0.59,1]	chr7	686258	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000680706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	3.11647	3.543825	3.97118	0.00535979	1.3379e-4	0.0406564	0.00229039
chr12	52905027	52905079	13337000	0	-	0.557692	(0.53,0.59]	chr12	1048640	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000546826.5:ENST00000548998.5:ENST00000546542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	3.20874	3.54379	3.87884	0.00278422	1.11478e-4	0.0241009	0.00213212
chr14	102029625	102029712	14495664	0	+	0.574713	(0.53,0.59]	chr14	1133178	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000554854.1:ENST00000645697.1:ENST00000642882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.64837	3.5435	4.43863	0.0199467	0.00254763	0.0984041	0.0233955
chr17	44863718	44863782	16560047	0	-	0.53125	(0.53,0.59]	chr17	1359740	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000585616.5:ENST00000587914.1:ENST00000585794.5:ENST00000586654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	2.64837	3.5435	4.43863	0.0199467	0.00254763	0.0984041	0.0233955
chr17	64003894	64003964	16636191	0	-	0.557143	(0.53,0.59]	chr17	1368043	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ICAM2	ENSG00000108622.11	ENST00000578379.5:ENST00000578892.5:ENST00000583684.5:ENST00000579788.6:ENST00000449662.6:ENST00000412356.5:ENST00000418105.5:ENST00000579687.5:ENST00000581417.5:ENST00000578313.5:ENST00000583366.5:ENST00000584084.1:ENST00000584403.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.64837	3.5435	4.43863	0.0199467	0.00254763	0.0984041	0.0233955
chr22	19851862	19851962	18434689	0	-	0.58	(0.53,0.59]	chr22	1571004	7	CDS	CDS:EXON_MRNA:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.64837	3.5435	4.43863	0.0199467	0.00254763	0.0984041	0.0233955
chr11	59806610	59806693	12401421	0	-	0.578313	(0.53,0.59]	chr11	959578	3	CDS	CDS:EXON_MRNA	MRPL16	ENSG00000166902.5	ENST00000300151.5:ENST00000534340.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr11	62691208	62691308	12410304	0	-	0.55	(0.53,0.59]	chr11	961427	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BSCL2:HNRNPUL2-BSCL2	ENSG00000168000.16:ENSG00000234857.2	ENST00000683892.1:ENST00000684475.1:ENST00000684285.1:ENST00000682555.1:ENST00000682262.1:ENST00000684115.1:ENST00000683025.1:ENST00000449636.6:ENST00000683846.1:ENST00000403734.2:ENST00000679883.1:ENST00000405837.5:ENST00000683296.1:ENST00000360796.10:ENST00000278893.11:ENST00000403098.6:ENST00000684067.1:ENST00000684258.1:ENST00000683494.1:ENST00000682003.1:ENST00000524862.6:ENST00000407022.7:ENST00000403550.5:ENST00000301781.10:ENST00000421906.5:ENST00000682794.1:ENST00000683368.1:ENST00000683193.1:ENST00000682223.1:ENST00000463679.6:ENST00000684609.1:ENST00000684720.1:ENST00000682644.1:ENST00000412351.2:ENST00000468505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr17	8475403	8475503	16432960	0	-	0.59	(0.53,0.59]	chr17	1340589	13	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr17	28888944	28889026	16488425	0	-	0.585366	(0.53,0.59]	chr17	1348377	1	CDS	CDS:EXON_MRNA:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000586827.6:ENST00000593158.1:ENST00000582174.5:ENST00000581509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr19	1495293	1495387	17193643	0	+	0.553191	(0.53,0.59]	chr19	1412283	1	CDS	CDS:EXON_MRNA	REEP6	ENSG00000115255.12	ENST00000591735.2:ENST00000233596.8:ENST00000395479.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr2	123869491	123869570	2863892	0	-	0.531646	(0.53,0.59]	chr2	255734	4	EXON_SMALL	EXON_SMALL	RN7SKP102	ENSG00000223118.1	ENST00000411186.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr22	49470806	49470906	18542572	0	-	0.57	(0.53,0.59]	chr22	1583944	292	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr8	129352880	129352980	10084266	0	-	0.55	(0.53,0.59]	chr8	758165	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000674599.1:ENST00000675506.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000675722.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1:ENST00000674906.1	lncRNA	lncRNA	lncRNA	lncRNA	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chrX	49546379	49546442	18694840	0	+	0.587302	(0.53,0.59]	chrX	1594928	1	CDS	CDS:EXON_MRNA	GAGE12D	ENSG00000227488.2	ENST00000405679.3	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.77921	3.543485	4.30776	0.0132865	0.00407289	0.0740932	0.0324137
chr18	32412598	32412694	17064960	0	-	0.4375	(0.42,0.455]	chr18	1402366	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	GAREM1:HNRNPA1P7	ENSG00000141441.16:ENSG00000215492.6	ENST00000269209.7:ENST00000399218.8:ENST00000521273.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	31	2	3.46349	3.54332	3.62315	9.0025e-4	4.234e-4	0.0102618	0.00613535
chr11	46776318	46776383	12383829	0	-	0.523077	(0.49,0.53]	chr11	956094	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.35133	3.543135	3.73494	0.0189345	0.00150139	0.0934721	0.0152367
chr2	219271425	219271512	2392986	0	+	0.528736	(0.49,0.53]	chr2	215542	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TUBA4B	ENSG00000243910.8	ENST00000490341.3:ENST00000473885.5:ENST00000485041.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.35133	3.543135	3.73494	0.0189345	0.00150139	0.0934721	0.0152367
chr12	113384104	113384184	13101690	0	+	0.6	(0.59,1]	chr12	1022422	1	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.42639	3.5430349999999997	4.65968	0.0409084	0.00413632	0.163285	0.0324998
chr19	49909413	49909511	17608190	0	-	0.612245	(0.59,1]	chr19	1484492	12	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	IL4I1:NUP62:CTC-326K19.6	ENSG00000104951.16:ENSG00000213024.12:ENSG00000269179.1	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000595761.1:ENST00000451973.1:ENST00000599567.5:ENST00000600645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.42639	3.5430349999999997	4.65968	0.0409084	0.00413632	0.163285	0.0324998
chr9	128160264	128160335	10476902	0	+	0.647887	(0.59,1]	chr9	789621	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	C9orf16	ENSG00000171159.5	ENST00000372994.2:ENST00000492588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	30	2	2.61074	3.542955	4.47517	0.025486	0.00735659	0.117089	0.0491503
chr1	211173758	211173849	698772	0	+	0.428571	(0.42,0.455]	chr1	70737	4	EXON_PSEUDO	EXON_PSEUDO	RP11-543B16.1	ENSG00000234004.4	ENST00000427600.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	45	2	2.36247	3.542695	4.72292	0.0462889	3.66958e-7	0.176878	1.6957e-5
chr5	10255975	10256064	5874573	0	+	0.505618	(0.49,0.53]	chr5	461861	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000625723.1:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	126	2	2.76018	3.54266	4.32514	1.35342e-4	1.44608e-9	0.0025037	1.45728e-7
chr20	14757759	14757858	17701084	0	+	0.555556	(0.53,0.59]	chr20	1495046	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	MACROD2:RPS10P2	ENSG00000172264.18:ENSG00000213950.2	ENST00000217246.8:ENST00000684519.1:ENST00000642719.1:ENST00000463861.5:ENST00000464883.5:ENST00000497992.1:ENST00000430953.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	3	52	2	3.47419	3.542605	3.61102	8.75273e-4	3.01487e-5	0.0106963	6.78876e-4
chr22	42777098	42777197	18524957	0	-	0.343434	(0.33,0.36]	chr22	1582027	8	EXON_PSEUDO	EXON_PSEUDO	RPL5P34	ENSG00000234009.1	ENST00000426545.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	23	2	2.00765	3.542595	5.07754	0.0287001	7.92926e-5	0.128757	0.00150306
chr1	212361262	212361360	702767	0	+	0.357143	(0.33,0.36]	chr1	71311	6	UTR3	UTR3:EXON_MRNA	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.91384	3.54253	4.17122	0.0021527	1.72402e-5	0.0208395	4.33531e-4
chr21	33553605	33553704	18101193	0	+	0.373737	(0.36,0.39]	chr21	1534527	30	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	3.18642	3.542395	3.89837	0.00359152	9.25116e-5	0.0302391	0.00169222
chr6	26216170	26216262	7647238	0	-	0.369565	(0.36,0.39]	chr6	582556	12	UTR3	UTR3:EXON_MRNA	H2BC8	ENSG00000273802.2	ENST00000541790.3	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.18642	3.542395	3.89837	0.00359152	9.25116e-5	0.0302391	0.00169222
chr5	138431424	138431491	6244614	0	+	0.358209	(0.33,0.36]	chr5	486600	1	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.97606	3.5422149999999997	4.10837	0.00871774	2.58508e-5	0.0558165	5.98505e-4
chr20	45640681	45640780	17986377	0	-	0.606061	(0.59,1]	chr20	1523961	3	EXON_PSEUDO	EXON_PSEUDO	RPS2P7	ENSG00000235508.3	ENST00000447334.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	84	2	3.4902	3.542205	3.59421	0.00130379	6.47795e-5	0.0142445	0.00126536
chr7	128769167	128769265	8521848	0	+	0.377551	(0.36,0.39]	chr7	650198	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	2.77925	3.5421400000000003	4.30503	3.2152e-5	7.76959e-6	7.12885e-4	2.43892e-4
chr12	113390079	113390175	13101755	0	+	0.458333	(0.455,0.49]	chr12	1022448	16	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.61558	3.5420800000000003	4.46858	0.00184897	2.38087e-6	0.0185736	8.3081e-5
chr5	55416050	55416132	5974089	0	+	0.414634	(0.39,0.42]	chr5	468397	2	CDS	CDS:UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000518955.1:ENST00000508716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	38	2	3.23174	3.541905	3.85207	2.82122e-4	1.28587e-4	0.00415762	0.00241206
chr2	200979281	200979381	3120904	0	-	0.38	(0.36,0.39]	chr2	275504	57	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.46176	3.54159	4.62142	0.00365867	7.26179e-7	0.0299719	3.39859e-5
chr12	6941373	6941463	12715689	0	+	0.655556	(0.59,1]	chr12	987322	1	CDS	CDS:EXON_MRNA	ATN1	ENSG00000111676.15	ENST00000356654.8:ENST00000396684.3:ENST00000537488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.84748	3.54139	4.2353	0.0165254	0.0124539	0.0873033	0.0712518
chr16	70381392	70381491	15997889	0	-	0.616162	(0.59,1]	chr16	1284763	56	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.84748	3.54139	4.2353	0.0165254	0.0124539	0.0873033	0.0712518
chr17	28554920	28554990	16485706	0	-	0.628571	(0.59,1]	chr17	1347688	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	30	2	2.84748	3.54139	4.2353	0.0165254	0.0124539	0.0873033	0.0712518
chr6	30490423	30490515	7111201	0	+	0.597826	(0.59,1]	chr6	544746	3	CDS	CDS:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5:ENST00000493699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.84748	3.54139	4.2353	0.0165254	0.0124539	0.0873033	0.0712518
chr22	39019664	39019762	18368460	0	+	0.612245	(0.59,1]	chr22	1562849	14	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	3.34171	3.5412749999999997	3.74084	0.00234977	4.03818e-4	0.0222173	0.00550292
chr9	121186952	121187019	10835947	0	-	0.38806	(0.36,0.39]	chr9	820937	1	CDS	CDS:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.33241	3.54124	3.75007	0.00193631	2.12157e-4	0.0192272	0.00329275
chr13	29514280	29514379	13945216	0	-	0.656566	(0.59,1]	chr13	1094548	50	UTR3	UTR3:EXON_MRNA	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.28778	3.5411400000000004	4.7945	0.0556537	0.0031766	0.191528	0.0279054
chr17	76888784	76888884	16360249	0	+	0.64	(0.59,1]	chr17	1328767	61	INTRON	INTRON	MGAT5B	ENSG00000167889.13	ENST00000569840.7:ENST00000301618.8:ENST00000374998.3:ENST00000428789.6:ENST00000565043.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	30	2	2.28778	3.5411400000000004	4.7945	0.0556537	0.0031766	0.191528	0.0279054
chr19	51225895	51225988	17378874	0	+	0.623656	(0.59,1]	chr19	1445215	2	CDS	CDS:EXON_MRNA	CD33	ENSG00000105383.15	ENST00000421133.6:ENST00000436584.6:ENST00000262262.5:ENST00000391796.7:ENST00000601785.5:ENST00000598473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.28778	3.5411400000000004	4.7945	0.0556537	0.0031766	0.191528	0.0279054
chr16	2775537	2775625	15827176	0	-	0.534091	(0.53,0.59]	chr16	1262736	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ELOB	ENSG00000103363.15	ENST00000409906.9:ENST00000262306.11:ENST00000409477.1:ENST00000494946.6:ENST00000572954.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	3.46349	3.5410250000000003	3.61856	0.0303021	9.2216e-4	0.129773	0.0104432
chr17	59664847	59664909	16295273	0	+	0.467742	(0.455,0.49]	chr17	1321660	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.40664	3.5408549999999996	4.67507	0.0123662	5.16001e-7	0.0705839	2.27446e-5
chr11	85990249	85990324	12526046	0	-	0.36	(0.33,0.36]	chr11	972204	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	3.03552	3.540845	4.04617	0.0012034	1.29334e-6	0.0134762	4.97655e-5
chr12	22065401	22065492	12783525	0	+	0.307692	(0.29,0.33]	chr12	992950	2	UTR3	UTR3:EXON_MRNA	CMAS	ENSG00000111726.13	ENST00000229329.7:ENST00000534981.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.96089	3.54078	4.12067	5.56633e-4	2.40819e-5	0.0076748	5.6648e-4
chr8	47935008	47935058	9817173	0	-	0.4	(0.39,0.42]	chr8	742867	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	3.44923	3.54053	3.63183	0.00105208	3.27813e-6	0.0123035	1.08637e-4
chr19	10116020	10116074	17457681	0	-	0.611111	(0.59,1]	chr19	1460380	2	CDS	CDS:EXON_MRNA	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000593054.5:ENST00000590158.1:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5:ENST00000589009.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.11074	3.540445	4.97015	0.0305	0.00140057	0.130204	0.0144327
chr2	96860625	96860725	2792227	0	-	0.63	(0.59,1]	chr2	249222	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.11074	3.540445	4.97015	0.0305	0.00140057	0.130204	0.0144327
chr17	40302296	40302394	16224547	0	+	0.367347	(0.36,0.39]	chr17	1312163	4	UTR3	UTR3:EXON_MRNA	CDC6	ENSG00000094804.12	ENST00000209728.9	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.49441	3.54039	3.58637	7.81559e-4	5.84377e-4	0.00927662	0.00793559
chr7	100095907	100095993	8949652	0	-	0.604651	(0.59,1]	chr7	683525	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	130	2	3.48599	3.5401	3.59421	6.47795e-5	2.69891e-5	0.00126536	6.88819e-4
chr5	131165277	131165349	6826856	0	-	0.722222	(0.59,1]	chr5	522086	2	UTR5	UTR5:EXON_MRNA:INTRON	HINT1	ENSG00000169567.13	ENST00000675372.1:ENST00000511475.6:ENST00000508495.5:ENST00000508488.2:ENST00000506908.2:ENST00000675491.1:ENST00000506207.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.84944	3.5398750000000003	4.23031	0.0128238	3.46639e-5	0.0719798	7.61275e-4
chr2	47478353	47478436	1785272	0	+	0.385542	(0.36,0.39]	chr2	172523	2	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.47194	3.539785	4.60763	0.00204665	8.03203e-7	0.0200766	3.319e-5
chr11	14464970	14465030	12281627	0	-	0.483333	(0.455,0.49]	chr11	949591	2	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.26623	3.53949	3.81275	0.0138827	2.31662e-4	0.0760883	0.00354314
chr14	105978519	105978608	14802390	0	-	0.47191	(0.455,0.49]	chr14	1160691	1	EXON_PSEUDO	EXON_PSEUDO	AB019441.29	ENSG00000225200.2	ENST00000392301.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	110	2	2.82961	3.539465	4.24932	2.1638e-4	2.75619e-9	0.00361336	2.54269e-7
chr2	171965427	171965517	2208537	0	+	0.388889	(0.36,0.39]	chr2	202141	2	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	73	2	3.51283	3.5392	3.56557	6.94453e-6	1.73355e-6	2.24818e-4	6.35767e-5
chr16	70254630	70254682	15996894	0	-	0.519231	(0.49,0.53]	chr16	1284607	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2:ENST00000676065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	3.23006	3.53919	3.84832	0.00253719	5.8066e-6	0.0233955	1.75335e-4
chr11	57331741	57331815	12394098	0	-	0.513514	(0.49,0.53]	chr11	958534	2	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	3.31729	3.5391399999999997	3.76099	2.00194e-4	7.87963e-6	0.0034021	2.25573e-4
chr12	98593687	98593784	13036890	0	+	0.628866	(0.59,1]	chr12	1014989	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551265.5:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	278	2	3.102	3.5389299999999997	3.97586	3.25316e-6	1.34487e-6	1.08085e-4	5.6532e-5
chr6	26546254	26546351	7102835	0	+	0.340206	(0.33,0.36]	chr6	543213	9	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	3.34893	3.5389150000000003	3.7289	2.22813e-4	1.33223e-5	0.00370775	3.48915e-4
chr1	93894670	93894728	1175483	0	-	0.413793	(0.39,0.42]	chr1	115691	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1:ENST00000467772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	1.99911	3.538815	5.07852	0.0477207	1.02164e-4	0.17993	0.00183311
chr3	40311469	40311520	3429110	0	+	0.392157	(0.39,0.42]	chr3	298219	1	CDS	CDS:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1:ENST00000487151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	1.99911	3.538815	5.07852	0.0477207	1.02164e-4	0.17993	0.00183311
chr1	143905555	143905655	1261695	0	-	0.62	(0.59,1]	chr1	123676	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3-2	ENSG00000273213.4	ENST00000650532.1:ENST00000609879.2:ENST00000392948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.03921	3.5387750000000002	5.03834	0.0371471	0.00108238	0.151849	0.0118355
chr3	196354403	196354502	4665009	0	-	0.414141	(0.39,0.42]	chr3	385869	69	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.51636	3.538665	3.56097	6.99837e-4	6.12149e-4	0.00846751	0.00818575
chr1	19622099	19622147	87074	0	+	0.3125	(0.29,0.33]	chr1	9741	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MICOS10:NBL1:MICOS10-NBL1	ENSG00000173436.15:ENSG00000158747.15:ENSG00000270136.6	ENST00000648702.1:ENST00000617872.4:ENST00000602662.1:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000602293.5:ENST00000602384.5:ENST00000602450.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	3.08261	3.53857	3.99453	0.0048227	8.03892e-5	0.0365653	0.00167226
chr1	149886359	149886449	1287107	0	-	0.622222	(0.59,1]	chr1	127853	1	CDS	CDS:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	22	557	2	2.9286	3.5385150000000003	4.14843	6.26008e-6	2.16224e-9	1.87037e-4	2.24024e-7
chr20	47210464	47210560	17993112	0	-	0.34375	(0.33,0.36]	chr20	1524924	14	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.82394	3.5385099999999996	5.25308	0.0494504	2.94355e-5	0.18557	6.67979e-4
chr1	183553895	183553994	598036	0	+	0.464646	(0.455,0.49]	chr1	62141	8	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.43664	3.5382100000000003	4.63978	0.00394058	6.94032e-4	0.0315828	0.00876781
chr1	151263970	151264028	471355	0	+	0.586207	(0.53,0.59]	chr1	48087	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5:ENST00000469786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	2.30988	3.538105	4.76633	0.00643853	6.98999e-4	0.0452349	0.00846751
chr7	138583849	138583924	8563540	0	+	0.28	[0,0.29]	chr7	653327	1	CDS	CDS:EXON_MRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.31697	3.5380900000000004	4.75921	0.00756459	2.77035e-4	0.0499309	0.00444204
chr6	144095497	144095573	8006758	0	-	0.578947	(0.53,0.59]	chr6	611846	1	UTR5	UTR5:EXON_MRNA	SF3B5	ENSG00000169976.7	ENST00000367569.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.88327	3.538075	5.19288	0.0298124	9.22873e-5	0.129773	0.0016906
chr20	43713053	43713106	17794493	0	+	0.490566	(0.49,0.53]	chr20	1504251	2	CDS	CDS:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.51671	3.538	4.55929	0.00768763	0.00116196	0.050396	0.0130851
chr1	23696373	23696465	98678	0	+	0.369565	(0.36,0.39]	chr1	11433	1	UTR3	UTR3:EXON_MRNA	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	137	2	2.63521	3.5379199999999997	4.44063	0.00633242	1.66716e-11	0.0446708	2.7509e-9
chr19	1144510	1144609	17417921	0	-	0.50505	(0.49,0.53]	chr19	1452252	124	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590998.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.99849	3.53784	4.07719	0.0074411	0.00630123	0.0492519	0.0445415
chr5	140660114	140660195	6255648	0	+	0.493827	(0.49,0.53]	chr5	487834	1	CDS	CDS:EXON_MRNA	IK	ENSG00000113141.18	ENST00000417647.7:ENST00000610522.4:ENST00000515015.1:ENST00000515592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.99849	3.53784	4.07719	0.0074411	0.00630123	0.0492519	0.0445415
chr17	81557380	81557479	16708174	0	-	0.454545	(0.42,0.455]	chr17	1377424	6	UTR3	UTR3:EXON_MRNA	NPLOC4	ENSG00000182446.14	ENST00000331134.11	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.42938	3.53781	4.64624	0.0045028	8.75333e-4	0.0349711	0.0101169
chr15	78860547	78860647	15042264	0	+	0.56	(0.53,0.59]	chr15	1183392	121	INTRON	INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000559697.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	439	5945	2	2.97784	3.5378049999999996	4.09777	3.19273e-9	1e-12	2.88796e-7	2.46312e-10
chr10	97430561	97430653	11212368	0	+	0.565217	(0.53,0.59]	chr10	852969	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	111	2	3.17316	3.53772	3.90228	7.8686e-5	8.71276e-8	0.00164157	4.96645e-6
chr11	34100349	34100448	11905498	0	+	0.393939	(0.39,0.42]	chr11	909587	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	3.1853	3.53761	3.88992	8.65244e-5	4.22388e-6	0.00177086	1.34652e-4
chr17	81510296	81510394	16707863	0	-	0.540816	(0.53,0.59]	chr17	1377329	10	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	201	2	3.24704	3.5375750000000004	3.82811	9.96984e-7	6.39565e-9	4.42534e-5	5.24401e-7
chr1	25399102	25399198	104313	0	+	0.447917	(0.42,0.455]	chr1	12232	5	EXON_PSEUDO	EXON_PSEUDO	RP3-469D22.1	ENSG00000238084.4	ENST00000419297.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	3.52659	3.537485	3.54838	6.87022e-4	5.9986e-4	0.00876781	0.0075062
chr10	72096961	72097054	11563917	0	-	0.430108	(0.42,0.455]	chr10	880108	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000672809.1:ENST00000342444.8:ENST00000486689.6:ENST00000534259.1:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000530394.5:ENST00000672940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	3.52659	3.537485	3.54838	6.87022e-4	5.9986e-4	0.00876781	0.0075062
chr1	109631251	109631351	399613	0	+	0.52	(0.49,0.53]	chr1	39002	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AMPD2	ENSG00000116337.20	ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7:ENST00000681121.1:ENST00000524975.2:ENST00000654851.1:ENST00000528958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.56183	3.5374749999999997	4.51312	0.0261296	0.00156636	0.118976	0.0156889
chr12	64747849	64747918	13379086	0	-	0.507246	(0.49,0.53]	chr12	1054260	3	CDS	CDS:EXON_MRNA	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.56183	3.5374749999999997	4.51312	0.0261296	0.00156636	0.118976	0.0156889
chr17	32493979	32494077	16499662	0	-	0.5	(0.49,0.53]	chr17	1350073	16	UTR3	UTR3:EXON_MRNA	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.56183	3.5374749999999997	4.51312	0.0261296	0.00156636	0.118976	0.0156889
chr2	112646928	112647006	2001742	0	+	0.5	(0.49,0.53]	chr2	190004	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.56183	3.5374749999999997	4.51312	0.0261296	0.00156636	0.118976	0.0156889
chr3	32759457	32759514	3396498	0	+	0.526316	(0.49,0.53]	chr3	295391	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CNOT10	ENSG00000182973.19	ENST00000328834.9:ENST00000331889.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1:ENST00000471003.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.56183	3.5374749999999997	4.51312	0.0261296	0.00156636	0.118976	0.0156889
chr1	26780756	26780852	111020	0	+	0.53125	(0.53,0.59]	chr1	13356	1	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	3.29588	3.537465	3.77905	1.96478e-4	1.21619e-6	0.00335505	4.71713e-5
chr4	119300335	119300435	5619274	0	-	0.47	(0.455,0.49]	chr4	447762	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C4orf3	ENSG00000164096.13	ENST00000399075.6:ENST00000504110.2	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	3.0141	3.537465	4.06083	9.3076e-4	3.56832e-5	0.0111917	7.81595e-4
chr7	121099925	121100009	8494848	0	+	0.416667	(0.39,0.42]	chr7	648348	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	6	68	2	3.51438	3.537465	3.56055	8.89542e-6	5.5681e-6	2.7461e-4	1.69276e-4
chr15	42442164	42442247	15239805	0	-	0.46988	(0.455,0.49]	chr15	1200371	1	CDS	CDS:EXON_MRNA	ZNF106	ENSG00000103994.18	ENST00000564754.7:ENST00000263805.8:ENST00000565380.5:ENST00000565500.5:ENST00000565611.5:ENST00000567772.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.30139	3.537285	4.77318	0.0530131	4.7888e-4	0.195536	0.00628636
chr4	105235141	105235241	5025999	0	+	0.46	(0.455,0.49]	chr4	409079	12	CDS	CDS:EXON_MRNA	TET2	ENSG00000168769.14	ENST00000305737.6:ENST00000513237.5:ENST00000540549.5:ENST00000265149.9:ENST00000380013.9:ENST00000413648.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.30139	3.537285	4.77318	0.0530131	4.7888e-4	0.195536	0.00628636
chr4	107614150	107614248	5583275	0	-	0.459184	(0.455,0.49]	chr4	445609	6	UTR3	UTR3:EXON_MRNA:INTRON	PAPSS1	ENSG00000138801.9	ENST00000514815.1:ENST00000265174.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.30139	3.537285	4.77318	0.0530131	4.7888e-4	0.195536	0.00628636
chr6	131675079	131675134	7403056	0	+	0.472727	(0.455,0.49]	chr6	567396	1	CDS	CDS:UTR3:EXON_MRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.30139	3.537285	4.77318	0.0530131	4.7888e-4	0.195536	0.00628636
chr19	804883	804939	17189510	0	+	0.678571	(0.59,1]	chr19	1411027	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1:ENST00000585956.5:ENST00000587136.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	62	2	3.24972	3.53714	3.82456	0.00314037	3.02854e-4	0.0264943	0.00472028
chr7	75981516	75981570	8342136	0	+	0.611111	(0.59,1]	chr7	636168	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	82	2	2.81459	3.537125	4.25966	0.00278977	2.95373e-5	0.0249234	6.69635e-4
chr1	154275615	154275701	480211	0	+	0.546512	(0.53,0.59]	chr1	49774	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HAX1	ENSG00000143575.15	ENST00000457918.6:ENST00000483970.6:ENST00000447768.6:ENST00000328703.12:ENST00000531435.5:ENST00000532105.1:ENST00000492550.1:ENST00000459914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	3.39416	3.537045	3.67993	0.00126006	3.22778e-4	0.013837	0.0046122
chr17	75778803	75778883	16684896	0	-	0.575	(0.53,0.59]	chr17	1373463	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H3-3B	ENSG00000132475.10	ENST00000254810.8:ENST00000593254.1:ENST00000586518.1:ENST00000592643.5:ENST00000591890.5:ENST00000589949.1:ENST00000587560.5:ENST00000589599.5:ENST00000586607.5:ENST00000586270.5:ENST00000587171.1:ENST00000589417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	154	2	2.51649	3.53694	4.55739	8.43592e-5	1.68703e-9	0.00173269	1.66782e-7
chr9	131148663	131148760	10495849	0	+	0.319588	(0.29,0.33]	chr9	793256	7	INTRON	INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.70085	3.536935	4.37302	4.87372e-4	6.52078e-6	0.00638318	2.12073e-4
chr1	40423043	40423137	154046	0	+	0.489362	(0.455,0.49]	chr1	19281	11	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	11	127	2	3.37084	3.53687	3.7029	1.67935e-6	3.05752e-8	6.17774e-5	2.22521e-6
chr12	120699010	120699108	13117496	0	+	0.418367	(0.39,0.42]	chr12	1024005	26	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.18155	3.5367550000000003	4.89196	0.0283931	2.62166e-4	0.127654	0.0039188
chr5	112161102	112161198	6150845	0	+	0.416667	(0.39,0.42]	chr5	480408	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	EPB41L4A-AS1	ENSG00000224032.7	ENST00000663232.1:ENST00000427306.2:ENST00000413221.7:ENST00000442823.2:ENST00000508590.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	2.18155	3.5367550000000003	4.89196	0.0283931	2.62166e-4	0.127654	0.0039188
chr11	71435044	71435135	12444396	0	-	0.527473	(0.49,0.53]	chr11	966968	8	UTR3	UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.64528	3.5365900000000003	4.4279	0.0202736	0.00196987	0.0984041	0.0193972
chr9	132911039	132911113	10878544	0	-	0.5	(0.49,0.53]	chr9	825389	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	TSC1	ENSG00000165699.15	ENST00000298552.9:ENST00000440111.6:ENST00000545250.5:ENST00000644097.1:ENST00000646625.1:ENST00000642627.1:ENST00000647534.1:ENST00000643875.1:ENST00000645901.1:ENST00000642811.1:ENST00000642617.1:ENST00000647279.1:ENST00000643583.1:ENST00000644319.1:ENST00000644255.1:ENST00000646391.1:ENST00000643072.1:ENST00000647506.1:ENST00000643362.1:ENST00000642344.1:ENST00000642745.1:ENST00000645150.1:ENST00000642646.1:ENST00000493467.6:ENST00000647462.1:ENST00000647078.1:ENST00000644997.1:ENST00000645129.1:ENST00000403810.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.64528	3.5365900000000003	4.4279	0.0202736	0.00196987	0.0984041	0.0193972
chrX	40074887	40074984	19045141	0	-	0.505155	(0.49,0.53]	chrX	1618754	27	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.64528	3.5365900000000003	4.4279	0.0202736	0.00196987	0.0984041	0.0193972
chr10	97430378	97430469	11212366	0	+	0.505495	(0.49,0.53]	chr10	852969	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.78962	3.53647	4.28332	0.0129044	0.00338762	0.0725185	0.0288632
chr20	32133048	32133126	17752289	0	+	0.512821	(0.49,0.53]	chr20	1498447	1	CDS_START	CDS_START:CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.78962	3.53647	4.28332	0.0129044	0.00338762	0.0725185	0.0288632
chr4	48382819	48382873	4826419	0	+	0.5	(0.49,0.53]	chr4	397716	1	CDS	CDS:UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.78962	3.53647	4.28332	0.0129044	0.00338762	0.0725185	0.0288632
chr5	160427714	160427793	6338717	0	+	0.518987	(0.49,0.53]	chr5	493684	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	118	2	3.06172	3.5362400000000003	4.01076	1.7263e-6	1.27106e-6	6.99335e-5	4.90487e-5
chr6	10728639	10728727	7048600	0	+	0.477273	(0.455,0.49]	chr6	539760	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5:ENST00000495549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	112	2	3.28934	3.53613	3.78292	1.00549e-6	5.88844e-7	4.45239e-5	2.5438e-5
chr16	58115268	58115362	15965456	0	-	0.531915	(0.53,0.59]	chr16	1280914	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CFAP20	ENSG00000070761.8	ENST00000262498.8:ENST00000562622.5:ENST00000564150.1:ENST00000562443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	2.63316	3.535895	4.43863	0.00474401	0.00254763	0.0361423	0.0233955
chr7	96709827	96709891	8939933	0	-	0.5625	(0.53,0.59]	chr7	682180	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SEM1	ENSG00000127922.9	ENST00000417009.5:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.3:ENST00000476463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.63316	3.535895	4.43863	0.00474401	0.00254763	0.0361423	0.0233955
chr19	38308791	38308849	17559410	0	-	0.551724	(0.53,0.59]	chr19	1474575	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1:ENST00000587361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	61	2	3.31499	3.53557	3.75615	2.16536e-4	3.217e-5	0.00361336	7.12922e-4
chr20	63520764	63520829	17865456	0	+	0.707692	(0.59,1]	chr20	1510936	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PPDPF	ENSG00000125534.10	ENST00000370179.8:ENST00000464438.1:ENST00000370177.1:ENST00000473620.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	178	2	2.59587	3.5355100000000004	4.47515	3.62328e-4	2.85796e-7	0.00545289	1.37303e-5
chr19	36146253	36146312	17308802	0	+	0.508475	(0.49,0.53]	chr19	1432247	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000586963.1:ENST00000589162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	4	52	2	3.10321	3.5353899999999996	3.96757	1.1948e-4	6.21316e-5	0.00208475	0.00134149
chr17	80138210	80138280	16704266	0	-	0.442857	(0.42,0.455]	chr17	1376655	2	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000575978.1:ENST00000647795.1:ENST00000576547.2:ENST00000575668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.05515	3.5353849999999998	5.01562	0.017518	1.01971e-4	0.0924156	0.0019861
chr1	228458229	228458319	746381	0	+	0.555556	(0.53,0.59]	chr1	75784	1	CDS	CDS:EXON_MRNA	H2BU1	ENSG00000196890.4	ENST00000620438.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.08958	3.535365	3.98115	1.30551e-4	6.28226e-5	0.0024373	0.00124286
chr8	120432029	120432123	10047884	0	-	0.382979	(0.36,0.39]	chr8	756191	1	CDS	CDS:EXON_MRNA:INTRON	MRPL13	ENSG00000172172.8	ENST00000518696.5:ENST00000306185.8:ENST00000518918.1:ENST00000520677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	3.17145	3.5353149999999998	3.89918	3.99865e-4	1.0624e-4	0.0054764	0.00205241
chr17	20999791	20999889	16477783	0	-	0.367347	(0.36,0.39]	chr17	1346694	3	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.20444	3.535235	4.86603	0.0237257	1.68962e-4	0.109365	0.00297945
chr1	241504041	241504109	1577434	0	-	0.5	(0.49,0.53]	chr1	157519	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	2.87268	3.53515	4.19762	0.00175078	4.23721e-7	0.0180053	1.92035e-5
chr1	203727394	203727482	669751	0	+	0.556818	(0.53,0.59]	chr1	67496	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000458092.5:ENST00000466407.1:ENST00000356729.5:ENST00000484746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	2.29789	3.535055	4.77222	0.00674768	6.67251e-4	0.0468196	0.00867533
chr1	42842956	42843044	162250	0	+	0.465909	(0.455,0.49]	chr1	20420	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	3.24913	3.5347150000000003	3.8203	0.00239443	6.9787e-6	0.0225356	2.0562e-4
chr16	3658128	3658228	15830469	0	-	0.57	(0.53,0.59]	chr16	1263594	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TRAP1	ENSG00000126602.11	ENST00000575707.5:ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000574494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	121	2	2.43673	3.53459	4.63245	2.07042e-4	1.37044e-8	0.00324727	1.1138e-6
chr10	104255212	104255271	11236729	0	+	0.559322	(0.53,0.59]	chr10	856306	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	GSTO1	ENSG00000148834.13	ENST00000470554.5:ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	2.20093	3.53458	4.86823	0.00507963	4.35895e-4	0.037544	0.00623608
chr9	112687006	112687105	10804973	0	-	0.333333	(0.33,0.36]	chr9	818555	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	1.8158	3.53444	5.25308	0.0161406	2.94355e-5	0.0860154	6.67979e-4
chr9	35700190	35700283	10639473	0	-	0.548387	(0.53,0.59]	chr9	804990	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	3.51884	3.5344249999999997	3.55001	6.11776e-4	8.13068e-6	0.00818575	2.32341e-4
chr12	111448497	111448595	13092082	0	+	0.510204	(0.49,0.53]	chr12	1021116	3	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.65324	3.5344200000000003	5.4156	0.0407792	1.84143e-5	0.163285	4.53637e-4
chr19	54207417	54207475	17390461	0	+	0.551724	(0.53,0.59]	chr19	1447218	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5:ENST00000302907.9:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	244	2	3.13611	3.534415	3.93272	3.45376e-7	2.31766e-9	1.61479e-5	2.37418e-7
chrX	65716838	65716901	18716124	0	+	0.555556	(0.53,0.59]	chrX	1596823	1	CDS_START	CDS_START:CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.51602	3.53438	4.55274	0.00264912	0.00167999	0.024013	0.0164993
chr10	114690338	114690437	11702294	0	-	0.474747	(0.455,0.49]	chr10	893019	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABLIM1:PPIAP19	ENSG00000099204.20:ENSG00000228169.3	ENST00000651092.1:ENST00000486414.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	23	2	2.40664	3.53437	4.6621	0.0123662	7.84472e-4	0.0705839	0.00927662
chr3	49360013	49360110	4174071	0	-	0.43299	(0.42,0.455]	chr3	350894	10	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	27	299	2	3.45957	3.534335	3.6091	6.0156e-9	6.58623e-10	5.44882e-7	7.20997e-8
chr20	45419503	45419555	17801646	0	+	0.596154	(0.59,1]	chr20	1505099	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000638953.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639194.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	30	2	2.32455	3.534165	4.74378	0.0520547	0.00312942	0.193787	0.0264364
chr2	32277987	32278071	1711972	0	+	0.702381	(0.59,1]	chr2	167928	2	UTR5	UTR5:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.69477	3.5340000000000003	4.37323	0.020208	0.00990413	0.0978331	0.061536
chr3	41227279	41227352	3432492	0	+	0.493151	(0.49,0.53]	chr3	298546	2	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.99849	3.5339549999999997	4.06942	0.00630123	3.44689e-5	0.0445415	7.57659e-4
chr1	235126717	235126816	1560246	0	-	0.545455	(0.53,0.59]	chr1	156039	40	INTRON	INTRON	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.90978	3.5339150000000004	4.15805	0.00857883	0.00680952	0.0552386	0.0468196
chr10	73397218	73397274	11571627	0	-	0.553571	(0.53,0.59]	chr10	880905	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.90978	3.5339150000000004	4.15805	0.00857883	0.00680952	0.0552386	0.0468196
chr11	68421696	68421795	11999206	0	+	0.565657	(0.53,0.59]	chr11	923605	48	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.90978	3.5339150000000004	4.15805	0.00857883	0.00680952	0.0552386	0.0468196
chr16	74452977	74453071	16030997	0	-	0.585106	(0.53,0.59]	chr16	1287251	10	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.90978	3.5339150000000004	4.15805	0.00857883	0.00680952	0.0552386	0.0468196
chr2	219219658	219219756	3191270	0	-	0.581633	(0.53,0.59]	chr2	280847	11	UTR3	UTR3:EXON_MRNA	RP11-803J6.1:ATG9A	ENSG00000284820.1:ENSG00000198925.12	ENST00000446716.5:ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.90978	3.5339150000000004	4.15805	0.00857883	0.00680952	0.0552386	0.0468196
chr12	121308479	121308579	13584794	0	-	0.59	(0.53,0.59]	chr12	1069548	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000422342.2:ENST00000535641.5:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000535482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.515	3.5338700000000003	4.55274	0.0292633	0.00167999	0.129773	0.0164993
chr20	44466656	44466749	17981953	0	-	0.548387	(0.53,0.59]	chr20	1523359	2	EXON_PSEUDO	EXON_PSEUDO	RPL37AP1	ENSG00000226243.1	ENST00000412502.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	2.515	3.5338700000000003	4.55274	0.0292633	0.00167999	0.129773	0.0164993
chr7	135444739	135444832	8552386	0	+	0.548387	(0.53,0.59]	chr7	652676	4	EXON_PSEUDO	EXON_PSEUDO	SDHDP2	ENSG00000227073.1	ENST00000436937.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	21	2	2.515	3.5338700000000003	4.55274	0.0292633	0.00167999	0.129773	0.0164993
chr8	21990864	21990919	9221978	0	+	0.545455	(0.53,0.59]	chr8	705003	2	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.515	3.5338700000000003	4.55274	0.0292633	0.00167999	0.129773	0.0164993
chr1	2309424	2309523	7400	0	+	0.323232	(0.29,0.33]	chr1	1667	28	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	3.42047	3.53378	3.64709	3.76873e-4	1.8012e-4	0.00523508	0.003142
chr8	47864693	47864763	9816434	0	-	0.514286	(0.49,0.53]	chr8	742710	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000546304.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.78773	3.53367	4.27961	0.00257389	9.03426e-6	0.0235767	2.53429e-4
chr7	101211897	101211950	8953692	0	-	0.641509	(0.59,1]	chr7	684685	2	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000440925.1:ENST00000421736.1:ENST00000463479.1:ENST00000478082.5:ENST00000460475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.24397	3.53361	4.82325	0.0206682	0.002381	0.0997234	0.0216895
chr1	1541966	1542065	827861	0	-	0.525253	(0.49,0.53]	chr1	82516	4	UTR3	UTR3:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	126	2	3.52743	3.5335099999999997	3.53959	7.08867e-6	6.86963e-8	2.27895e-4	4.04915e-6
chr9	35067890	35067957	10638198	0	-	0.447761	(0.42,0.455]	chr9	804568	1	CDS	CDS:UTR3:EXON_MRNA	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680731.1:ENST00000681845.1:ENST00000680079.1:ENST00000681386.1:ENST00000679449.1:ENST00000680900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	2.56263	3.5333750000000004	4.50412	9.19381e-4	1.67683e-6	0.0104432	6.81279e-5
chr16	16018619	16018719	15567494	0	+	0.5	(0.49,0.53]	chr16	1232692	16	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.94403	3.5333300000000003	4.12263	0.00591451	0.00122634	0.0427941	0.0130695
chr16	18554806	18554852	15876849	0	-	0.5	(0.49,0.53]	chr16	1269235	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000562312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.94403	3.5333300000000003	4.12263	0.00591451	0.00122634	0.0427941	0.0130695
chr22	20065816	20065913	18297049	0	+	0.505155	(0.49,0.53]	chr22	1553104	13	UTR3	UTR3:EXON_MRNA	TANGO2	ENSG00000183597.16	ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000398042.6:ENST00000399807.7:ENST00000327374.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.94403	3.5333300000000003	4.12263	0.00591451	0.00122634	0.0427941	0.0130695
chrX	65731106	65731190	18716269	0	+	0.571429	(0.53,0.59]	chrX	1596841	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	7	113	2	2.72408	3.532785	4.34149	3.72688e-4	1.18769e-8	0.00559101	8.9786e-7
chrX	1391909	1392009	18925627	0	-	0.64	(0.59,1]	chrX	1612970	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	375	2	2.71173	3.5327550000000003	4.35378	6.4526e-5	2.31619e-9	0.0013795	2.19051e-7
chr10	124405499	124405563	11729338	0	-	0.53125	(0.53,0.59]	chr10	895071	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000467675.5:ENST00000483711.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	66	2	3.18707	3.532185	3.8773	3.55681e-4	5.13471e-6	0.00539248	1.58468e-4
chr1	183546058	183546151	597945	0	+	0.44086	(0.42,0.455]	chr1	62104	2	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	3.31073	3.532165	3.7536	1.94134e-4	2.51614e-7	0.00332542	1.23584e-5
chr1	19110159	19110223	875971	0	-	0.453125	(0.42,0.455]	chr1	90006	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000494503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	1.95205	3.532115	5.11218	0.0248244	6.01815e-5	0.113644	0.00130886
chr6	140862019	140862118	7999377	0	-	0.444444	(0.42,0.455]	chr6	611471	33	INTRON	INTRON	RP11-515I12.1	ENSG00000234147.2	ENST00000650553.2:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	3	28	2	1.95205	3.532115	5.11218	0.0248244	6.01815e-5	0.113644	0.00130886
chr6	7289474	7289571	7586888	0	-	0.28866000000000003	[0,0.29]	chr6	578694	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	97	2	3.25677	3.53191	3.80705	4.37804e-6	1.06906e-8	1.5246e-4	8.23347e-7
chr18	671379	671451	16717032	0	+	0.416667	(0.39,0.42]	chr18	1379301	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	90	2	3.51438	3.531775	3.54917	8.89542e-6	3.81322e-7	2.7461e-4	1.74979e-5
chr7	76304173	76304234	8343363	0	+	0.721311	(0.59,1]	chr7	636387	1	UTR3	UTR3:EXON_MRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000447574.1:ENST00000674650.1:ENST00000675417.1:ENST00000429938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	3.3965	3.53177	3.66704	6.16458e-4	1.83913e-4	0.00822794	0.00296795
chr16	21836276	21836373	15889958	0	-	0.56701	(0.53,0.59]	chr16	1271456	16	CDS	CDS:EXON_MRNA:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.50447	3.531535	4.5586	0.0301162	0.00161229	0.130016	0.0169168
chr6	116279730	116279830	7908911	0	-	0.58	(0.53,0.59]	chr6	605660	1	CDS_START	CDS_START:CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	2.50447	3.531535	4.5586	0.0301162	0.00161229	0.130016	0.0169168
chr11	251819	251882	11756134	0	+	0.571429	(0.53,0.59]	chr11	897608	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PSMD13	ENSG00000185627.18	ENST00000532097.6:ENST00000431206.6:ENST00000621534.4:ENST00000525665.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1:ENST00000533717.5:ENST00000527982.1:ENST00000532025.1:ENST00000529679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr16	67541866	67541965	15710606	0	+	0.565657	(0.53,0.59]	chr16	1250318	1	CDS	CDS:EXON_MRNA	RIPOR1	ENSG00000039523.20	ENST00000379312.7:ENST00000042381.9:ENST00000540839.7:ENST00000422602.8:ENST00000428437.6:ENST00000569253.5:ENST00000566559.5:ENST00000569733.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr17	35626620	35626694	16206506	0	+	0.540541	(0.53,0.59]	chr17	1309051	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr2	130167545	130167590	2873990	0	-	0.555556	(0.53,0.59]	chr2	257111	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000430682.5:ENST00000435455.6:ENST00000451542.5:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr22	30345018	30345104	18469779	0	-	0.55814	(0.53,0.59]	chr22	1575882	2	CDS	CDS:EXON_MRNA:INTRON	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000447376.1:ENST00000471037.1:ENST00000471342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr3	12900691	12900788	4042328	0	-	0.57732000000000006	(0.53,0.59]	chr3	339376	14	UTR3	UTR3:EXON_MRNA:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr5	175510108	175510207	6397612	0	+	0.535354	(0.53,0.59]	chr5	496779	1	CDS	CDS:UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000507017.5:ENST00000321442.10:ENST00000502393.5:ENST00000507823.5:ENST00000513725.1:ENST00000506963.1:ENST00000502865.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.89916	3.531495	4.16383	0.00890406	0.00659193	0.0565003	0.0454205
chr1	161158120	161158211	498759	0	+	0.505495	(0.49,0.53]	chr1	53849	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UFC1	ENSG00000143222.12	ENST00000467540.5:ENST00000368003.6:ENST00000483191.5:ENST00000473766.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	1.81659	3.53119	5.24579	0.0376859	4.073e-5	0.147713	9.64741e-4
chr1	65570719	65570802	253004	0	+	0.313253	(0.29,0.33]	chr1	28803	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.63813	3.5311399999999997	4.42415	0.00803229	5.54501e-8	0.0528968	3.37102e-6
chr1	201876232	201876331	661506	0	+	0.474747	(0.455,0.49]	chr1	66335	1	UTR3	UTR3:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9:ENST00000456707.1	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	1.61715	3.5309850000000003	5.44482	0.0342264	1.36044e-5	0.142155	3.54469e-4
chr17	59679457	59679519	16295432	0	+	0.532258	(0.53,0.59]	chr17	1321709	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	3.30943	3.53089	3.75235	0.0018255	1.48881e-6	0.0183913	5.60262e-5
chr1	68242958	68243055	1082111	0	-	0.57732000000000006	(0.53,0.59]	chr1	110347	6	EXON_PSEUDO	EXON_PSEUDO	RPS7P4	ENSG00000229133.1	ENST00000444127.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	3.05775	3.5308400000000004	4.00393	0.0108084	6.94592e-4	0.064368	0.00846751
chr5	146251792	146251875	6279938	0	+	0.554217	(0.53,0.59]	chr5	489416	2	CDS	CDS:EXON_MRNA:INTRON	RP11-449H3.3:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.05775	3.5308400000000004	4.00393	0.0108084	6.94592e-4	0.064368	0.00846751
chr21	8401359	8401459	18041544	0	+	0.49	(0.455,0.49]	chr21	1530863	57	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1010	10638	2	3.43659	3.530635	3.62468	5.56255e-12	1e-12	1.03613e-9	2.46312e-10
chr16	4811231	4811294	15838422	0	-	0.396825	(0.39,0.42]	chr16	1264809	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000587936.5:ENST00000591451.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	3.32811	3.530525	3.73294	0.0190864	0.00182819	0.0958835	0.0183913
chr2	61187735	61187827	2687371	0	-	0.391304	(0.39,0.42]	chr2	239900	4	UTR3	UTR3:EXON_MRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.32811	3.530525	3.73294	0.0190864	0.00182819	0.0958835	0.0183913
chr10	60791889	60791971	11063664	0	+	0.451219	(0.42,0.455]	chr10	841950	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	76	2	3.20518	3.53031	3.85544	6.88593e-5	5.8615e-7	0.00146004	2.5331e-5
chr17	59647486	59647576	16295085	0	+	0.4	(0.39,0.42]	chr17	1321611	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	107	2	3.15915	3.53024	3.90133	2.84183e-5	1.64074e-8	7.14297e-4	1.18809e-6
chr2	112658983	112659083	2001875	0	+	0.48	(0.455,0.49]	chr2	190039	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000456264.5:ENST00000413135.1:ENST00000480984.1:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.83283	3.530175	4.22752	6.06795e-4	1.24055e-5	0.00817698	3.28918e-4
chr19	6212548	6212646	17440803	0	-	0.632653	(0.59,1]	chr19	1456576	23	UTR3	UTR3:EXON_MRNA	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.11894	3.53012	4.9413	0.0293157	0.00191468	0.128478	0.0190905
chr17	28573834	28573934	16485918	0	-	0.59	(0.53,0.59]	chr17	1347742	2	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	152	2	3.01426	3.529985	4.04571	6.15506e-6	2.53005e-8	2.0192e-4	1.72434e-6
chr1	229431598	229431642	1541765	0	-	0.659091	(0.59,1]	chr1	154334	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTA1	ENSG00000143632.15	ENST00000684723.1:ENST00000366683.4:ENST00000366684.7	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	3.02726	3.529945	4.03263	2.90566e-4	1.11254e-4	0.00427123	0.00213212
chr1	207076034	207076133	684734	0	+	0.353535	(0.33,0.36]	chr1	69250	38	UTR3	UTR3:EXON_MRNA:INTRON	PFKFB2	ENSG00000123836.15	ENST00000411990.6:ENST00000367080.8:ENST00000367079.3:ENST00000473310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.53712	3.52989	4.52266	0.00766322	8.34989e-4	0.0503696	0.0102956
chr8	47962763	47962859	9316136	0	+	0.395833	(0.39,0.42]	chr8	713527	1	CDS	CDS:UTR3:EXON_MRNA	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000519170.1:ENST00000519138.1:ENST00000647877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	1.84551	3.529835	5.21416	0.0168113	5.57684e-9	0.0886699	4.69626e-7
chr22	19176420	19176494	18431159	0	-	0.621622	(0.59,1]	chr22	1570492	1	CDS	CDS:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.92097	3.5297400000000003	4.13851	0.0102634	5.66622e-5	0.0628742	0.00114182
chr5	138435889	138435984	6244660	0	+	0.494737	(0.49,0.53]	chr5	486607	3	UTR3	UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	41	2	1.89342	3.529495	5.16557	0.0079839	6.36135e-5	0.0521676	0.00136069
chr11	308192	308272	11756388	0	+	0.5375	(0.53,0.59]	chr11	897723	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM2	ENSG00000185201.17	ENST00000681810.1:ENST00000681914.1:ENST00000680081.1:ENST00000679962.1:ENST00000681900.1:ENST00000681276.1:ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000680619.1:ENST00000602569.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	113	2	2.92749	3.5294550000000005	4.13142	1.17279e-5	8.11888e-7	3.45313e-4	3.35153e-5
chr17	44925785	44925883	16560608	0	-	0.316327	(0.29,0.33]	chr17	1359908	12	UTR3	UTR3:EXON_MRNA	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.24226	3.52922	4.81618	0.0306054	2.74489e-4	0.130226	0.00406677
chr2	121761408	121761466	2034611	0	+	0.465517	(0.455,0.49]	chr2	192242	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TSN	ENSG00000211460.12	ENST00000455432.5:ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000478165.5:ENST00000490717.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	43	2	3.46389	3.5291300000000003	3.59437	9.14164e-4	3.2026e-5	0.0110519	7.10499e-4
chr18	12987057	12987152	16764017	0	+	0.305263	(0.29,0.33]	chr18	1382774	1	UTR3	UTR3:EXON_MRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.80161	3.529105	4.2566	0.00415667	0.00303129	0.0325842	0.0257942
chr8	6445555	6445653	9178227	0	+	0.306122	(0.29,0.33]	chr8	700954	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCPH1	ENSG00000147316.14	ENST00000519480.6:ENST00000344683.10:ENST00000522905.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.80161	3.529105	4.2566	0.00415667	0.00303129	0.0325842	0.0257942
chr1	20744008	20744106	883109	0	-	0.489796	(0.455,0.49]	chr1	91337	39	UTR3	UTR3:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	141	2	3.23993	3.5287050000000004	3.81748	2.62293e-7	1.32706e-7	1.27527e-5	8.0135e-6
chr3	149034917	149034998	4509107	0	-	0.444444	(0.42,0.455]	chr3	374156	1	CDS	CDS:EXON_MRNA	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1:ENST00000472830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.19674	3.52856	4.86038	0.0254904	3.34791e-4	0.117089	0.00472923
chr17	28574066	28574153	16485922	0	-	0.597701	(0.59,1]	chr17	1347746	1	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	208	2	2.28622	3.528555	4.77089	8.0715e-4	4.98739e-8	0.00948404	3.39991e-6
chr22	37244148	37244248	18503690	0	-	0.69	(0.59,1]	chr22	1578979	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAC2	ENSG00000128340.15	ENST00000249071.11:ENST00000406508.5:ENST00000405484.5:ENST00000441619.5:ENST00000469532.1:ENST00000401529.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.71222	3.5285450000000003	4.34487	0.0123678	0.00398753	0.0705839	0.031888
chr2	170993581	170993680	3010659	0	-	0.323232	(0.29,0.33]	chr2	266766	29	UTR3	UTR3:EXON_MRNA	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.86059	3.5283700000000002	4.19615	5.48907e-4	2.2256e-5	0.00697672	5.84518e-4
chr10	73375597	73375696	11571398	0	-	0.272727	[0,0.29]	chr10	880849	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000463788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	72	2	2.95017	3.528365	4.10656	2.39533e-5	6.43078e-8	6.2082e-4	3.82995e-6
chr1	166854177	166854276	520000	0	+	0.484848	(0.455,0.49]	chr1	55860	39	UTR3	UTR3:EXON_MRNA	POGK	ENSG00000143157.12	ENST00000367876.9:ENST00000367875.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.69344	3.5282549999999997	4.36307	0.0176068	0.00218641	0.0925619	0.0208941
chr11	836346	836442	11759139	0	+	0.65625	(0.59,1]	chr11	898586	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD151	ENSG00000177697.19	ENST00000524748.6:ENST00000642413.1:ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000530155.5:ENST00000525718.6:ENST00000645878.1:ENST00000529810.5:ENST00000526693.5:ENST00000531999.5:ENST00000525868.5:ENST00000525333.5:ENST00000532045.6:ENST00000527341.5:ENST00000526661.5:ENST00000530726.5:ENST00000528011.2:ENST00000528867.5:ENST00000530320.5:ENST00000526439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	3.51608	3.528025	3.53997	0.00108676	9.75839e-5	0.0118659	0.00193292
chr1	161455582	161455682	1333752	0	-	0.69	(0.59,1]	chr1	136938	147	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	604	14039	2	3.46434	3.52789	3.59144	2.23299e-9	1.42787e-9	2.12391e-7	1.55416e-7
chr1	32174275	32174374	127051	0	+	0.414141	(0.39,0.42]	chr1	15636	35	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	18	2	3.11549	3.5277250000000002	3.93996	0.00841622	0.00403491	0.054565	0.032143
chr1	196741962	196742051	641510	0	+	0.404494	(0.39,0.42]	chr1	64518	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.11549	3.5277250000000002	3.93996	0.00841622	0.00403491	0.054565	0.032143
chr1	222628350	222628447	723948	0	+	0.412371	(0.39,0.42]	chr1	72962	9	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.11549	3.5277250000000002	3.93996	0.00841622	0.00403491	0.054565	0.032143
chr15	90441505	90441594	15100161	0	+	0.404494	(0.39,0.42]	chr15	1188059	1	CDS	CDS:EXON_MRNA:INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.11549	3.5277250000000002	3.93996	0.00841622	0.00403491	0.054565	0.032143
chr8	30177125	30177178	9253247	0	+	0.396226	(0.39,0.42]	chr8	708911	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	LEPROTL1:DCTN6	ENSG00000104660.19:ENSG00000104671.8	ENST00000520739.5:ENST00000522141.5:ENST00000221114.8:ENST00000520829.5:ENST00000522540.5:ENST00000523666.5:ENST00000519830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	3.11549	3.5277250000000002	3.93996	0.00841622	0.00403491	0.054565	0.032143
chr3	129171078	129171155	4443902	0	-	0.415584	(0.39,0.42]	chr3	369323	1	CDS	CDS:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	94	2	2.55985	3.52762	4.49539	0.00115425	1.9274e-9	0.0130851	1.87621e-7
chr3	169992593	169992685	3877766	0	+	0.456522	(0.455,0.49]	chr3	328528	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC62	ENSG00000008952.17	ENST00000337002.9:ENST00000480708.5:ENST00000470355.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	62	2	3.06025	3.5276199999999998	3.99499	1.55878e-4	1.91791e-6	0.00259387	7.6073e-5
chr14	102038532	102038606	14495768	0	+	0.554054	(0.53,0.59]	chr14	1133212	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000555800.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	3.18707	3.52758	3.86809	3.55681e-4	1.18973e-4	0.00539248	0.00207755
chr1	154945665	154945760	1305909	0	-	0.578947	(0.53,0.59]	chr1	131551	2	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	3.02054	3.5275350000000003	4.03453	0.00577011	4.6e-5	0.0426551	9.56296e-4
chr17	1679111	1679206	16401596	0	-	0.536842	(0.53,0.59]	chr17	1334953	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	3.47419	3.527525	3.58086	8.75273e-4	5.24546e-6	0.0106963	1.60997e-4
chr1	33024504	33024567	924580	0	-	0.539683	(0.53,0.59]	chr1	97548	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.29875	3.52745	3.75615	0.00191422	2.16536e-4	0.018324	0.00361336
chr7	103522021	103522110	8963473	0	-	0.561798	(0.53,0.59]	chr7	686140	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	3.29875	3.52745	3.75615	0.00191422	2.16536e-4	0.018324	0.00361336
chr2	170966730	170966830	2206515	0	+	0.35	(0.33,0.36]	chr2	201863	7	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.7655	3.52738	4.28926	0.0175892	7.83197e-6	0.0918323	2.24375e-4
chr12	51060226	51060325	12876173	0	+	0.484848	(0.455,0.49]	chr12	1000594	9	UTR3	UTR3:EXON_MRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000552645.5:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	4	53	2	3.49424	3.527305	3.56037	5.72551e-4	9.02087e-6	0.0078026	2.53429e-4
chr1	226188957	226189045	1532165	0	-	0.431818	(0.42,0.455]	chr1	153318	2	EXON_PSEUDO	EXON_PSEUDO	RP11-275I14.2	ENSG00000223570.2	ENST00000429867.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	2.50649	3.5272050000000004	4.54792	0.0302857	9.66045e-4	0.130016	0.0115185
chrX	77828623	77828722	19128975	0	-	0.444444	(0.42,0.455]	chrX	1626855	30	UTR3	UTR3:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.50649	3.5272050000000004	4.54792	0.0302857	9.66045e-4	0.130016	0.0115185
chr1	15534236	15534303	68759	0	+	0.41791	(0.39,0.42]	chr1	7655	1	CDS	CDS:UTR5:EXON_MRNA	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.49701	3.52712	4.55723	0.0339607	0.00117753	0.141431	0.0127276
chr1	38710400	38710498	144553	0	+	0.408163	(0.39,0.42]	chr1	18021	16	EXON_PSEUDO	EXON_PSEUDO	HSPA5P1	ENSG00000215895.4	ENST00000442006.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.49701	3.52712	4.55723	0.0339607	0.00117753	0.141431	0.0127276
chr4	169690529	169690590	5217889	0	+	0.409836	(0.39,0.42]	chr4	420893	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.49701	3.52712	4.55723	0.0339607	0.00117753	0.141431	0.0127276
chr1	154582082	154582180	1303537	0	-	0.336735	(0.33,0.36]	chr1	131361	5	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.28792	3.5270850000000005	4.76625	0.0239159	3.84608e-4	0.112531	0.00531017
chr1	184073537	184073633	601723	0	+	0.333333	(0.33,0.36]	chr1	62323	8	UTR3	UTR3:EXON_MRNA:INTRON	TSEN15	ENSG00000198860.14	ENST00000423085.7:ENST00000361641.6:ENST00000643231.1:ENST00000533373.6:ENST00000647437.1:ENST00000647465.1:ENST00000643916.1:ENST00000645668.2:ENST00000644145.1:ENST00000644592.1:ENST00000646297.2:ENST00000645963.2:ENST00000644479.1:ENST00000462677.3:ENST00000643702.1:ENST00000644815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.28792	3.5270850000000005	4.76625	0.0239159	3.84608e-4	0.112531	0.00531017
chr7	72942530	72942629	8330200	0	+	0.686869	(0.59,1]	chr7	634054	8	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.4902	3.52706	3.56392	0.00130379	8.86707e-4	0.0142445	0.0101815
chr21	33915727	33915763	18224390	0	-	0.722222	(0.59,1]	chr21	1546677	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	123	2	2.26526	3.527005	4.78875	0.00279128	1.30092e-6	0.0249347	5.00075e-5
chr8	92966059	92966144	9951699	0	-	0.647059	(0.59,1]	chr8	750777	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TRIQK	ENSG00000205133.12	ENST00000537541.1:ENST00000521988.6:ENST00000518748.5:ENST00000520686.5:ENST00000523580.5:ENST00000520430.5:ENST00000517858.5:ENST00000517540.5:ENST00000378861.9:ENST00000524037.5:ENST00000521617.5:ENST00000520384.5:ENST00000519069.5:ENST00000522925.5:ENST00000522903.5:ENST00000523375.5:ENST00000523060.1:ENST00000519792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.93698	3.52685	4.11672	0.0222273	0.0015925	0.105595	0.0159023
chr2	96291446	96291502	2790450	0	-	0.464286	(0.455,0.49]	chr2	248787	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	1.98188	3.5268	5.07172	0.0226804	8.3067e-5	0.105116	0.00171126
chr17	47221681	47221731	16248591	0	+	0.48	(0.455,0.49]	chr17	1316202	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1:ENST00000570671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	3.43961	3.52674	3.61387	8.42878e-5	2.88949e-5	0.0015859	7.23839e-4
chr7	73536543	73536637	8854309	0	-	0.489362	(0.455,0.49]	chr7	675976	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000493671.5:ENST00000486818.5:ENST00000411832.5:ENST00000482231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	3.49306	3.526715	3.56037	5.72551e-4	6.07633e-5	0.0078026	0.00121305
chr1	215621311	215621410	714011	0	+	0.40404	(0.39,0.42]	chr1	72144	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000495537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	1.66154	3.5267099999999996	5.39188	0.0452475	1.75441e-5	0.174743	4.38078e-4
chr6	33264007	33264103	7668875	0	-	0.510417	(0.49,0.53]	chr6	587379	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000493674.5:ENST00000471309.1:ENST00000461743.1:ENST00000493379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	3.23006	3.52668	3.8233	0.00253719	1.44192e-4	0.0233955	0.00242438
chr15	43194841	43194938	14895100	0	+	0.443299	(0.42,0.455]	chr15	1170890	1	UTR3	UTR3:EXON_MRNA	CCNDBP1	ENSG00000166946.14	ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000565296.5:ENST00000568507.5:ENST00000444658.7:ENST00000565958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.81191	3.52662	4.24133	0.00326918	6.31824e-4	0.0282494	0.0078507
chr11	57802108	57802196	11953079	0	+	0.454545	(0.42,0.455]	chr11	914824	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000527599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.81175	3.52654	4.24133	0.00326918	0.00227654	0.0282494	0.0209546
chr1	21835491	21835591	890753	0	-	0.61	(0.59,1]	chr1	92281	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.04362	3.526535	5.00945	0.036186	0.00149725	0.145024	0.0159607
chr17	75046924	75046985	16682120	0	-	0.639344	(0.59,1]	chr17	1372903	1	UTR5	UTR5:EXON_MRNA	ATP5PD	ENSG00000167863.12	ENST00000344546.8:ENST00000301587.9:ENST00000538432.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.04362	3.526535	5.00945	0.036186	0.00149725	0.145024	0.0159607
chr12	1788384	1788481	12689035	0	+	0.463918	(0.455,0.49]	chr12	984486	25	UTR3	UTR3:EXON_MRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.12843	3.52653	3.92463	0.0113417	0.00392855	0.0665375	0.0322851
chr15	89198591	89198690	15093474	0	+	0.474747	(0.455,0.49]	chr15	1187100	33	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.12843	3.52653	3.92463	0.0113417	0.00392855	0.0665375	0.0322851
chr20	49633340	49633439	18003158	0	-	0.444444	(0.42,0.455]	chr20	1525863	5	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.81137	3.52635	4.24133	0.0120386	0.00326918	0.0700876	0.0282494
chr3	140950827	140950927	3783147	0	+	0.43	(0.42,0.455]	chr3	322826	77	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000502756.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.81137	3.52635	4.24133	0.0120386	0.00326918	0.0700876	0.0282494
chr1	32033260	32033334	125757	0	+	0.486486	(0.455,0.49]	chr1	15436	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	2.92901	3.526	4.12299	0.00141135	9.14802e-9	0.0151901	7.185e-7
chr6	43530755	43530824	7708157	0	-	0.492754	(0.49,0.53]	chr6	591495	2	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	56	2	3.41615	3.525975	3.6358	9.74162e-5	2.45857e-5	0.00193088	5.74553e-4
chr7	106091604	106091704	8977617	0	-	0.31	(0.29,0.33]	chr7	687014	12	UTR3	UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000464029.5:ENST00000470347.1:ENST00000634737.1:ENST00000460770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	3.51776	3.5259549999999997	3.53415	9.94392e-5	5.03888e-5	0.00195926	0.00103483
chr18	31546458	31546550	16809164	0	+	0.51087	(0.49,0.53]	chr18	1386480	9	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	3.14975	3.5258450000000003	3.90194	9.11374e-5	8.97896e-5	0.00182992	0.0016645
chr12	68741812	68741896	12940305	0	+	0.392857	(0.39,0.42]	chr12	1008516	1	CDS	CDS:UTR3:EXON_MRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.55844	3.52584	4.49324	0.0263695	0.00108192	0.117164	0.0124943
chr22	21761350	21761449	18442364	0	-	0.444444	(0.42,0.455]	chr22	1572508	18	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	12	151	2	3.27	3.525765	3.78153	1.15661e-5	3.1666e-9	3.41751e-4	2.8673e-7
chr6	36914553	36914623	7135651	0	+	0.528571	(0.49,0.53]	chr6	549786	1	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.49797	3.525615	4.55326	0.00843736	2.17704e-8	0.0546021	1.51603e-6
chr1	111454283	111454356	407284	0	+	0.410959	(0.39,0.42]	chr1	40169	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	73	2	3.38738	3.525495	3.66361	1.35138e-4	5.172e-7	0.0025017	2.27888e-5
chr1	32014189	32014283	125562	0	+	0.787234	(0.59,1]	chr1	15418	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	96	2	2.70668	3.5254849999999998	4.34429	0.0014458	1.84713e-5	0.0155288	4.5469e-4
chr17	8545523	8545600	16433707	0	-	0.467532	(0.455,0.49]	chr17	1340757	2	CDS	CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000584124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.40009	3.52544	3.65079	0.00120619	3.61776e-4	0.0129255	0.00544764
chr1	173857605	173857705	550323	0	+	0.49	(0.455,0.49]	chr1	58498	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.50904	3.52539	4.54174	0.0310515	0.00130137	0.131262	0.0136936
chr15	57262093	57262150	14949887	0	+	0.473684	(0.455,0.49]	chr15	1174920	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000560506.5:ENST00000559703.1:ENST00000561420.5:ENST00000558210.5:ENST00000561449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.50904	3.52539	4.54174	0.0310515	0.00130137	0.131262	0.0136936
chr8	21970143	21970226	9221754	0	+	0.46988	(0.455,0.49]	chr8	704925	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.50904	3.52539	4.54174	0.0310515	0.00130137	0.131262	0.0136936
chr1	77129483	77129575	309378	0	+	0.521739	(0.49,0.53]	chr1	31621	5	EXON_PSEUDO	EXON_PSEUDO	RP4-706A16.3	ENSG00000226084.5	ENST00000471722.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	58	2	2.6922	3.5253750000000004	4.35855	4.50155e-4	5.06834e-6	0.00605268	1.7169e-4
chr10	21690633	21690733	10961391	0	+	0.38	(0.36,0.39]	chr10	834141	17	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.62565	3.52534	4.42503	0.0219469	0.00133228	0.103959	0.0144372
chr10	45461510	45461609	11467231	0	-	0.363636	(0.36,0.39]	chr10	874488	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7:ENST00000395769.6:ENST00000476962.1:ENST00000602712.2:ENST00000453980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.62565	3.52534	4.42503	0.0219469	0.00133228	0.103959	0.0144372
chr2	38365073	38365173	2603406	0	-	0.39	(0.36,0.39]	chr2	234489	56	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.62565	3.52534	4.42503	0.0219469	0.00133228	0.103959	0.0144372
chr20	56404019	56404117	17834517	0	+	0.387755	(0.36,0.39]	chr20	1507915	4	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9:ENST00000493039.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.62565	3.52534	4.42503	0.0219469	0.00133228	0.103959	0.0144372
chr5	917657	917750	5851394	0	+	0.376344	(0.36,0.39]	chr5	460060	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TRIP13	ENSG00000071539.14	ENST00000166345.8:ENST00000510412.5:ENST00000508430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.62565	3.52534	4.42503	0.0219469	0.00133228	0.103959	0.0144372
chr8	94511629	94511729	9960216	0	-	0.37	(0.36,0.39]	chr8	751283	5	CDS	CDS:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.62565	3.52534	4.42503	0.0219469	0.00133228	0.103959	0.0144372
chr7	127694827	127694887	8515363	0	+	0.516667	(0.49,0.53]	chr7	649666	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000461056.5:ENST00000468621.5:ENST00000483503.5:ENST00000492772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.38683	3.52527	4.66371	0.012654	5.91374e-7	0.0718207	2.55031e-5
chr1	247156941	247157034	1603277	0	-	0.419355	(0.39,0.42]	chr1	159212	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.71912	3.52521	4.3313	0.0163125	0.00209984	0.0866586	0.0204266
chr10	30338326	30338426	11436307	0	-	0.42	(0.39,0.42]	chr10	871981	9	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.71912	3.52521	4.3313	0.0163125	0.00209984	0.0866586	0.0204266
chr14	92117537	92117637	14770188	0	-	0.42	(0.39,0.42]	chr14	1156768	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFB1	ENSG00000183648.11	ENST00000553514.5:ENST00000329559.8:ENST00000605997.6:ENST00000617122.1:ENST00000555441.5:ENST00000553666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.71912	3.52521	4.3313	0.0163125	0.00209984	0.0866586	0.0204266
chr2	61187918	61188009	2687373	0	-	0.406593	(0.39,0.42]	chr2	239900	6	UTR3	UTR3:EXON_MRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.71912	3.52521	4.3313	0.0163125	0.00209984	0.0866586	0.0204266
chr5	96776018	96776114	6721094	0	-	0.416667	(0.39,0.42]	chr5	517382	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000512852.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.71912	3.52521	4.3313	0.0163125	0.00209984	0.0866586	0.0204266
chr11	498055	498141	12226404	0	-	0.593023	(0.59,1]	chr11	943342	2	CDS	CDS:UTR3:EXON_MRNA	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	31	2	3.06258	3.525045	3.98751	0.0301044	0.00616167	0.129773	0.0438642
chr17	41755648	41755743	16542981	0	-	0.631579	(0.59,1]	chr17	1356256	12	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.06258	3.525045	3.98751	0.0301044	0.00616167	0.129773	0.0438642
chr4	56977485	56977585	5435732	0	-	0.68	(0.59,1]	chr4	435230	1	CDS_START	CDS_START:CDS:EXON_MRNA	NOA1	ENSG00000084092.7	ENST00000264230.5	protein_coding	protein_coding	protein_coding	protein_coding	1	31	2	3.06258	3.525045	3.98751	0.0301044	0.00616167	0.129773	0.0438642
chr9	129148550	129148649	10483779	0	+	0.666667	(0.59,1]	chr9	791429	12	UTR3	UTR3:EXON_MRNA:INTRON	PTPA:RP11-344B5.6	ENSG00000119383.21:ENSG00000235007.3	ENST00000358994.9:ENST00000357197.8:ENST00000348141.9:ENST00000347048.8:ENST00000337738.6:ENST00000355007.7:ENST00000393370.7:ENST00000452489.6:ENST00000674648.1:ENST00000674559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	31	2	3.06258	3.525045	3.98751	0.0301044	0.00616167	0.129773	0.0438642
chr1	1049902	1049969	2381	0	+	0.716418	(0.59,1]	chr1	551	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.30623	3.525005	4.74378	0.0170607	0.00312942	0.0896731	0.0264364
chr17	43015672	43015769	16550648	0	-	0.587629	(0.53,0.59]	chr17	1357992	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	270	2	3.44029	3.52489	3.60949	4.57071e-8	1.08996e-8	3.15499e-6	8.34724e-7
chr3	113809816	113809913	3676122	0	+	0.371134	(0.36,0.39]	chr3	314510	5	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.46497	3.524865	3.58476	0.00105709	5.01956e-4	0.0123035	0.00653592
chr5	40826646	40826745	6552879	0	-	0.474747	(0.455,0.49]	chr5	507727	15	UTR3	UTR3:EXON_MRNA	RPL37	ENSG00000145592.14	ENST00000274242.10	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.26324	3.52468	4.78612	0.00868189	2.17075e-7	0.0558093	1.0861e-5
chr16	20736001	20736099	15883325	0	-	0.316327	(0.29,0.33]	chr16	1270412	25	UTR3	UTR3:EXON_MRNA:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.59395	3.5246449999999996	4.45534	0.0249836	0.00110984	0.114013	0.0127344
chr11	47422647	47422722	12386590	0	-	0.586667	(0.53,0.59]	chr11	956857	2	CDS	CDS:UTR3:EXON_MRNA	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	3.11275	3.524615	3.93648	0.00407571	8.06385e-5	0.032143	0.00167444
chr2	65251026	65251099	1854194	0	+	0.424658	(0.42,0.455]	chr2	175952	1	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	1.68865	3.52431	5.35997	0.0276098	2.41298e-5	0.124664	5.6648e-4
chrX	52697162	52697251	19074125	0	-	0.47191	(0.455,0.49]	chrX	1622050	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSX2	ENSG00000241476.8	ENST00000337502.5:ENST00000336777.9:ENST00000476392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.27492	3.52405	4.77318	0.0193827	4.7888e-4	0.0943643	0.00628636
chr7	135951573	135951630	9085799	0	-	0.473684	(0.455,0.49]	chr7	693659	2	CDS	CDS:EXON_MRNA:INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.92901	3.523785	4.1185600000000004	0.00141135	2.49433e-5	0.0151901	5.8178e-4
chr2	15620301	15620396	1650896	0	+	0.442105	(0.42,0.455]	chr2	162956	2	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	2.51988	3.52377	4.52766	0.00300574	1.58778e-6	0.0267032	5.89925e-5
chr7	76066278	76066310	8342405	0	+	0.53125	(0.53,0.59]	chr7	636260	1	CDS	CDS:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	3.06939	3.52365	3.97791	6.54756e-4	2.51849e-6	0.00860229	8.73415e-5
chr11	18407181	18407278	11831564	0	+	0.484536	(0.455,0.49]	chr11	906045	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	439	2	3.38853	3.52358	3.65863	4.41113e-9	4.71829e-11	4.14469e-7	6.96921e-9
chr20	57373474	57373527	17836805	0	+	0.415094	(0.39,0.42]	chr20	1508307	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.62131	3.523575	4.42584	0.00609677	0.00199429	0.0439136	0.0189001
chr17	19446557	19446655	16472801	0	-	0.479592	(0.455,0.49]	chr17	1345836	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC004448.5:RPS2P46	ENSG00000235979.9:ENSG00000189343.7	ENST00000658570.1:ENST00000627753.1:ENST00000668984.1:ENST00000629630.1:ENST00000655270.1:ENST00000456537.6:ENST00000458332.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	9	48	2	1.71925	3.5234199999999998	5.32759	0.00786771	1.92345e-5	0.0514287	5.18397e-4
chr14	103337115	103337171	14502160	0	+	0.392857	(0.39,0.42]	chr14	1134008	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000558316.5:ENST00000560200.5:ENST00000558265.5:ENST00000392715.6:ENST00000558506.1:ENST00000561439.1:ENST00000561023.1:ENST00000559923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.48908	3.523155	4.55723	0.0101318	0.00117753	0.0626311	0.0127276
chrX	53547843	53547929	19077321	0	-	0.534884	(0.53,0.59]	chrX	1622706	3	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	85	2	2.57867	3.523155	4.46764	0.00198261	5.65391e-8	0.0195088	3.41755e-6
chr7	117129792	117129847	8480002	0	+	0.363636	(0.36,0.39]	chr7	647634	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000449366.5:ENST00000487459.5:ENST00000393443.5:ENST00000467538.5:ENST00000465133.5:ENST00000477742.5:ENST00000393444.7:ENST00000393447.8:ENST00000420755.5:ENST00000490039.1:ENST00000489293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.32678	3.52302	4.71926	0.0193538	5.29682e-4	0.0943643	0.006804
chr7	103367954	103368054	8441715	0	+	0.37	(0.36,0.39]	chr7	645123	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	3.36872	3.522815	3.67691	1.31092e-4	2.38454e-5	0.00226268	6.18922e-4
chrX	153700580	153700669	19273608	0	-	0.561798	(0.53,0.59]	chrX	1637347	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	2.38191	3.5226949999999997	4.66348	0.00477439	0.00107799	0.0368489	0.0118238
chr17	35682694	35682759	16207084	0	+	0.538462	(0.53,0.59]	chr17	1309125	1	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	1.78041	3.52266	5.26491	0.0407112	6.31437e-5	0.163285	0.00124286
chr22	21447234	21447333	18302336	0	+	0.585859	(0.53,0.59]	chr22	1554129	6	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.78041	3.52266	5.26491	0.0407112	6.31437e-5	0.163285	0.00124286
chr9	73158748	73158803	10304666	0	+	0.472727	(0.455,0.49]	chr9	776015	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5:ENST00000376911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	61	2	2.09123	3.52266	4.95409	0.00905243	5.5347e-8	0.0574173	3.37102e-6
chr11	1753032	1753126	12230415	0	-	0.734043	(0.59,1]	chr11	944375	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636579.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.50322	3.522525	4.54183	0.00863444	0.0070583	0.0556009	0.0478044
chr19	18435756	18435838	17499324	0	-	0.609756	(0.59,1]	chr19	1468105	1	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2:ENST00000583309.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.50322	3.522525	4.54183	0.00863444	0.0070583	0.0556009	0.0478044
chr16	24771439	24771539	15602531	0	+	0.39	(0.36,0.39]	chr16	1237101	127	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.88918	3.5225049999999998	4.15583	0.00212816	1.9188e-5	0.0206577	4.68725e-4
chr17	7576751	7576810	16105666	0	+	0.525424	(0.49,0.53]	chr17	1296958	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000577731.1:ENST00000583389.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	6	43	2	2.30059	3.5224849999999996	4.74438	0.001114	5.91752e-4	0.0127792	0.00743488
chr22	19723938	19724023	18295918	0	+	0.741176	(0.59,1]	chr22	1552888	2	CDS	CDS:UTR3:EXON_MRNA	SEPT5-GP1BB:SEPTIN5:GP1BB	ENSG00000284874.1:ENSG00000184702.20:ENSG00000203618.6	ENST00000455843.5:ENST00000431044.5:ENST00000470814.1:ENST00000366425.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	3.34612	3.52236	3.6986	4.89626e-4	2.60979e-4	0.00639399	0.0042461
chr13	46158521	46158586	14009942	0	-	0.507692	(0.49,0.53]	chr13	1098573	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.43991	3.522335	3.60476	4.52633e-4	8.40266e-5	0.00642319	0.00158427
chr3	31596797	31596863	3392090	0	+	0.348485	(0.33,0.36]	chr3	295026	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	3.3227	3.52226	3.72182	0.00222616	1.63969e-6	0.0211992	6.05996e-5
chr11	71990656	71990717	12010037	0	+	0.491803	(0.49,0.53]	chr11	925324	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNF121	ENSG00000137522.18	ENST00000530058.5:ENST00000530655.5:ENST00000533380.5:ENST00000393713.7:ENST00000361756.8:ENST00000490867.5:ENST00000528683.5:ENST00000526549.5:ENST00000525243.5:ENST00000530137.1:ENST00000525176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.48488	3.5220849999999997	4.55929	0.032052	0.00116196	0.133433	0.0130851
chr12	6593482	6593549	13187334	0	-	0.492537	(0.49,0.53]	chr12	1032358	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.48488	3.5220849999999997	4.55929	0.032052	0.00116196	0.133433	0.0130851
chr7	92613452	92613551	8924974	0	-	0.373737	(0.36,0.39]	chr7	681136	87	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	2.88947	3.5220700000000003	4.15467	3.63143e-5	5.53167e-7	8.77394e-4	2.4163e-5
chr5	97030628	97030728	6118897	0	+	0.41	(0.39,0.42]	chr5	478869	22	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	3.10755	3.5220399999999996	3.93653	5.39401e-6	2.99324e-7	1.64762e-4	1.60515e-5
chr16	21973895	21973976	15586934	0	+	0.444444	(0.42,0.455]	chr16	1235470	1	CDS	CDS:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000563711.5:ENST00000567810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	2.76161	3.522015	4.28242	9.19052e-4	2.10422e-7	0.0111046	1.06041e-5
chr2	156584411	156584511	2150203	0	+	0.39	(0.36,0.39]	chr2	198496	16	UTR3	UTR3:EXON_MRNA:INTRON	GPD2	ENSG00000115159.16	ENST00000310454.10:ENST00000438166.7:ENST00000409861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.45656	3.5220149999999997	4.58747	0.0100637	6.55819e-4	0.0624019	0.00860229
chr7	56054435	56054503	8290443	0	+	0.426471	(0.42,0.455]	chr7	631460	2	CDS	CDS:EXON_MRNA:INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000493855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	1.99701	3.5219050000000003	5.0468	0.0235036	1.33918e-4	0.111072	0.00229039
chr20	49984175	49984263	17814685	0	+	0.522727	(0.49,0.53]	chr20	1506978	5	CDS	CDS:EXON_MRNA	SNAI1	ENSG00000124216.4	ENST00000244050.3	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.92082	3.521725	4.12263	0.00827037	0.00591451	0.0534766	0.0427941
chr6	149746395	149746495	8019087	0	-	0.53	(0.49,0.53]	chr6	612761	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6:ENST00000543637.1:ENST00000463048.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.92082	3.521725	4.12263	0.00827037	0.00591451	0.0534766	0.0427941
chr7	6031729	6031829	8662487	0	-	0.51	(0.49,0.53]	chr7	662554	23	INTRON	INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.92082	3.521725	4.12263	0.00827037	0.00591451	0.0534766	0.0427941
chr19	40826283	40826377	17567742	0	-	0.574468	(0.53,0.59]	chr19	1476671	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYP2F2P	ENSG00000237118.3	ENST00000641827.1:ENST00000437853.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	39	2	2.37402	3.52169	4.66936	0.00230837	0.00103174	0.0211205	0.0121443
chr20	31770406	31770471	17749668	0	+	0.384615	(0.36,0.39]	chr20	1498015	2	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.6181	3.521565	4.42503	0.00176908	0.00133228	0.0172426	0.0144372
chr1	19244897	19244997	877420	0	-	0.46	(0.455,0.49]	chr1	90540	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000475079.1:ENST00000488681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	3.17056	3.521445	3.87233	4.1243e-4	1.08465e-4	0.00604953	0.00193256
chr14	102726506	102726604	14500032	0	+	0.459184	(0.455,0.49]	chr14	1133640	1	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7:ENST00000560472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	3.17056	3.521445	3.87233	4.1243e-4	1.08465e-4	0.00604953	0.00193256
chr5	94569379	94569470	6710403	0	-	0.362637	(0.36,0.39]	chr5	516593	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	KIAA0825:MTND6P3	ENSG00000185261.15:ENSG00000254132.1	ENST00000682413.1:ENST00000513200.7:ENST00000329378.7:ENST00000520612.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	34	2	3.2928	3.5214350000000003	3.75007	2.65442e-4	2.12157e-4	0.004287	0.00329275
chr1	202471863	202471947	1450452	0	-	0.547619	(0.53,0.59]	chr1	145717	1	EXON_PSEUDO	EXON_PSEUDO	RP11-175B9.3	ENSG00000236439.4	ENST00000422457.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	94	2	3.08958	3.52143	3.95328	1.30551e-4	3.12214e-7	0.0024373	1.47997e-5
chr15	72346526	72346593	15369456	0	-	0.477612	(0.455,0.49]	chr15	1214425	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	3.44026	3.521385	3.60251	8.71641e-5	4.10073e-6	0.00177086	1.31665e-4
chr1	156136037	156136121	486136	0	+	0.607143	(0.59,1]	chr1	51288	2	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	219	2	3.47301	3.521345	3.56968	5.12604e-6	3.14019e-6	1.73448e-4	1.04999e-4
chr6	10725906	10725957	7048571	0	+	0.705882	(0.59,1]	chr6	539754	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5:ENST00000495549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.97802	3.521295	4.06457	0.00133365	9.48087e-5	0.0139317	0.00188744
chr15	68778920	68779017	15359846	0	-	0.350515	(0.33,0.36]	chr15	1213200	5	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	3.44007	3.521025	3.60198	6.01238e-4	1.36013e-5	0.00811676	3.54469e-4
chr17	62381928	62382015	16308229	0	+	0.505747	(0.49,0.53]	chr17	1322678	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	EFCAB3:RP11-51L5.2	ENSG00000172421.10:ENSG00000239809.1	ENST00000636041.1:ENST00000450662.7:ENST00000305286.8:ENST00000520404.5:ENST00000518576.1:ENST00000495438.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	4	65	2	1.9035	3.520925	5.13835	0.0295204	1.2496e-8	0.129773	9.37962e-7
chr15	72375719	72375795	15369772	0	-	0.618421	(0.59,1]	chr15	1214493	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683228.1:ENST00000563908.2:ENST00000569509.5:ENST00000568260.2:ENST00000567213.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.59461	3.5206600000000003	4.44671	0.0259455	0.00931497	0.117079	0.0586162
chr19	1434812	1434912	17193257	0	+	0.72	(0.59,1]	chr19	1412185	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000589484.5:ENST00000585485.2:ENST00000589874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.59461	3.5206600000000003	4.44671	0.0259455	0.00931497	0.117079	0.0586162
chr22	41663815	41663892	18381717	0	+	0.649351	(0.59,1]	chr22	1564737	1	UTR3	UTR3:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.59461	3.5206600000000003	4.44671	0.0259455	0.00931497	0.117079	0.0586162
chr3	47419609	47419704	4160733	0	-	0.6	(0.59,1]	chr3	348122	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.59461	3.5206600000000003	4.44671	0.0259455	0.00931497	0.117079	0.0586162
chr6	34770290	34770342	7125625	0	+	0.692308	(0.59,1]	chr6	548378	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.59461	3.5206600000000003	4.44671	0.0259455	0.00931497	0.117079	0.0586162
chr17	7512157	7512250	16105294	0	+	0.612903	(0.59,1]	chr17	1296789	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000576553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.4994	3.5206150000000003	4.54183	0.0333573	0.0070583	0.137922	0.0478044
chr1	32330577	32330631	128498	0	+	0.481481	(0.455,0.49]	chr1	15935	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5:ENST00000484305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	2.53286	3.520455	4.50805	0.0282409	0.00122223	0.124386	0.0135383
chr17	1858119	1858201	16402470	0	-	0.47561	(0.455,0.49]	chr17	1335108	2	EXON_PSEUDO	EXON_PSEUDO	AC016292.3	ENSG00000108958.4	ENST00000451056.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	2.53286	3.520455	4.50805	0.0282409	0.00122223	0.124386	0.0135383
chr1	207794362	207794458	690223	0	+	0.416667	(0.39,0.42]	chr1	70119	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000636114.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.48357	3.5203999999999995	4.55723	0.00171404	0.00117753	0.017714	0.0127276
chr19	49014543	49014603	17368332	0	+	0.583333	(0.53,0.59]	chr19	1442327	2	CDS	CDS:UTR3:EXON_MRNA	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	3.30943	3.520315	3.7312	0.0018255	1.38467e-5	0.0183913	3.5918e-4
chr4	99948367	99948461	5551581	0	-	0.43617	(0.42,0.455]	chr4	443717	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	147	2	3.23639	3.520275	3.80416	8.78116e-7	1.41089e-8	3.9726e-5	1.04508e-6
chr1	151399980	151400049	471571	0	+	0.623188	(0.59,1]	chr1	48188	1	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	3.41536	3.52009	3.62482	0.00164655	7.40647e-4	0.0163443	0.00925967
chr12	57720098	57720180	12904339	0	+	0.609756	(0.59,1]	chr12	1005902	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	60	2	3.41536	3.52009	3.62482	0.00164655	7.40647e-4	0.0163443	0.00925967
chr16	23865223	23865322	15595708	0	+	0.323232	(0.29,0.33]	chr16	1236798	275	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000498058.1:ENST00000645517.1:ENST00000498739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.36742	3.51999	4.67256	0.0147368	6.52913e-7	0.0801529	3.08543e-5
chr11	123059884	123059956	12636988	0	-	0.486111	(0.455,0.49]	chr11	980718	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	155	2	3.50448	3.51994	3.5354	1.5805e-7	3.71916e-8	8.29809e-6	2.63423e-6
chr1	225866627	225866682	1530765	0	-	0.472727	(0.455,0.49]	chr1	153094	2	CDS	CDS:UTR5:EXON_MRNA	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000537914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr11	62762946	62763026	11973860	0	+	0.475	(0.455,0.49]	chr11	917889	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POLR2G	ENSG00000168002.12	ENST00000533442.5:ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr14	81196107	81196174	14730536	0	-	0.462687	(0.455,0.49]	chr14	1154007	1	CDS	CDS:UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr16	74628522	74628594	16032656	0	-	0.472222	(0.455,0.49]	chr16	1287421	2	CDS	CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr5	119541904	119541994	6178728	0	+	0.477778	(0.455,0.49]	chr5	482063	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5:ENST00000509606.1:ENST00000503310.1:ENST00000643897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr5	176506767	176506850	6402675	0	+	0.457831	(0.455,0.49]	chr5	497381	1	CDS	CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr7	92611864	92611964	8924958	0	-	0.47	(0.455,0.49]	chr7	681136	71	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.83792	3.5199049999999996	4.20189	0.0110512	0.00397662	0.0665375	0.0322851
chr12	53464810	53464901	12886583	0	+	0.571429	(0.53,0.59]	chr12	1002444	2	EXON_SMALL	EXON_SMALL:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-793H13.8:PCBP2:PCBP2-OT1:ENSG10010139146.1	ENSG00000257379.1:ENSG00000197111.16:ENSG00000282977.1:ENSG00000273658.1	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1:ENST00000634357.1:ENST00000612963.1	misc_RNA	misc_RNA	misc_RNA:protein_coding:lncRNA	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	11	150	2	3.38737	3.51989	3.65241	3.10117e-6	1.65888e-7	1.14992e-4	8.651e-6
chr17	78175563	78175618	16693284	0	-	0.6	(0.59,1]	chr17	1375305	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.09833	3.519815	4.9413	0.0150311	0.00191468	0.0816517	0.0190905
chr11	71434681	71434772	12444392	0	-	0.626374	(0.59,1]	chr11	966968	4	UTR3	UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	30	2	2.9228	3.5197599999999998	4.11672	0.0222273	0.00981698	0.105595	0.0612992
chrX	153934985	153935066	19275436	0	-	0.82716	(0.59,1]	chrX	1637811	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ARHGAP4:NAA10	ENSG00000089820.16:ENSG00000102030.16	ENST00000494813.5:ENST00000464845.6:ENST00000370015.8:ENST00000370009.5:ENST00000466877.5:ENST00000370011.7:ENST00000432089.1:ENST00000477750.5:ENST00000393710.7:ENST00000478177.1:ENST00000488481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	30	2	2.9228	3.5197599999999998	4.11672	0.0222273	0.00981698	0.105595	0.0612992
chr2	64990084	64990170	1853045	0	+	0.651163	(0.59,1]	chr2	175806	5	CDS	CDS:EXON_MRNA:INTRON	SLC1A4	ENSG00000115902.11	ENST00000493121.5:ENST00000531327.5:ENST00000471551.5:ENST00000234256.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.69477	3.51953	4.34429	0.020208	1.84713e-5	0.0978331	4.5469e-4
chr3	150546419	150546513	4517244	0	-	0.62766	(0.59,1]	chr3	374955	4	UTR5	UTR5:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1:ENST00000491660.1	protein_coding	protein_coding	protein_coding	protein_coding	7	135	2	2.0442	3.5194900000000002	4.99478	0.00492506	3.43637e-7	0.0378997	1.60752e-5
chr16	70253267	70253324	15996874	0	-	0.561404	(0.53,0.59]	chr16	1284596	1	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	92	2	2.89235	3.5194	4.14645	2.32261e-5	1.52587e-5	6.06413e-4	3.89884e-4
chr5	126836453	126836547	6202851	0	+	0.340426	(0.33,0.36]	chr5	483234	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	3.46908	3.519285	3.56949	0.00114872	5.48184e-4	0.0130528	0.00697082
chr10	3776880	3776979	11348522	0	-	0.343434	(0.33,0.36]	chr10	865180	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.6995	3.5192300000000003	4.33896	0.017838	0.00182033	0.0934844	0.0183913
chr2	86777548	86777646	1928631	0	+	0.346939	(0.33,0.36]	chr2	181779	43	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.6995	3.5192300000000003	4.33896	0.017838	0.00182033	0.0934844	0.0183913
chr2	111862458	111862528	2847100	0	-	0.357143	(0.33,0.36]	chr2	253925	2	CDS	CDS:EXON_MRNA	ANAPC1	ENSG00000153107.13	ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.6995	3.5192300000000003	4.33896	0.017838	0.00182033	0.0934844	0.0183913
chr3	181146309	181146386	3935388	0	+	0.337662	(0.33,0.36]	chr3	330796	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	SOX2-OT:RP11-262M14.2	ENSG00000242808.10:ENSG00000242140.1	ENST00000660576.1:ENST00000626948.2:ENST00000643236.2:ENST00000646949.2:ENST00000647552.1:ENST00000645960.1:ENST00000643131.2:ENST00000665187.1:ENST00000656613.1:ENST00000645423.2:ENST00000461063.6:ENST00000630482.2:ENST00000493116.6:ENST00000645983.1:ENST00000654538.1:ENST00000646683.1:ENST00000493521.5:ENST00000647179.1:ENST00000460739.5:ENST00000665485.1:ENST00000487828.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	15	2	2.6995	3.5192300000000003	4.33896	0.017838	0.00182033	0.0934844	0.0183913
chr9	70384801	70384900	10677448	0	-	0.343434	(0.33,0.36]	chr9	808399	3	UTR3	UTR3:EXON_MRNA	KLF9	ENSG00000119138.5	ENST00000377126.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.6995	3.5192300000000003	4.33896	0.017838	0.00182033	0.0934844	0.0183913
chrX	16841864	16841962	18594146	0	+	0.346939	(0.33,0.36]	chrX	1588438	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10:ENST00000485153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.6995	3.5192300000000003	4.33896	0.017838	0.00182033	0.0934844	0.0183913
chr15	58717576	58717651	15311901	0	-	0.44	(0.42,0.455]	chr15	1208386	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	2.97857	3.519055	4.05954	0.00617886	2.50668e-4	0.0439741	0.00378275
chr7	75418507	75418603	8858935	0	-	0.583333	(0.53,0.59]	chr7	676960	19	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.21941	3.5189	3.81839	0.0184435	0.00266171	0.0945306	0.0240332
chr9	136474048	136474145	10890905	0	-	0.587629	(0.53,0.59]	chr9	827596	1	CDS	CDS:EXON_MRNA	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11:ENST00000371706.7:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.37399	3.518735	4.66348	0.0126178	0.00107799	0.0717599	0.0118238
chrX	120077621	120077690	19194117	0	-	0.536232	(0.53,0.59]	chrX	1631808	2	UTR5	UTR5:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.37399	3.518735	4.66348	0.0126178	0.00107799	0.0717599	0.0118238
chr11	46320935	46321030	11934751	0	+	0.547368	(0.53,0.59]	chr11	912340	3	UTR3	UTR3:EXON_MRNA	CREB3L1	ENSG00000157613.11	ENST00000621158.5:ENST00000616094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.27113	3.5187299999999997	4.76633	0.0178853	6.98999e-4	0.0918323	0.00846751
chr6	33314004	33314041	7669355	0	-	0.567568	(0.53,0.59]	chr6	587595	1	CDS_START	CDS_START:CDS:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.27113	3.5187299999999997	4.76633	0.0178853	6.98999e-4	0.0918323	0.00846751
chr2	186509002	186509091	2260951	0	+	0.337079	(0.33,0.36]	chr2	205567	4	UTR3	UTR3:EXON_MRNA	ZC3H15	ENSG00000065548.18	ENST00000337859.11:ENST00000445547.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.46908	3.51863	3.56818	0.00114872	3.90735e-5	0.0130528	8.43777e-4
chr3	185418481	185418580	4625654	0	-	0.585859	(0.53,0.59]	chr3	382004	11	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	66	2	2.62309	3.5181949999999995	4.4133	0.00065129300000000005	4.11992e-6	0.00805846	1.44702e-4
chr12	69586752	69586815	12943406	0	+	0.492063	(0.49,0.53]	chr12	1008958	1	CDS	CDS:UTR5:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000546859.5:ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000550455.5:ENST00000549933.5:ENST00000544368.6:ENST00000551899.5:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	3.35133	3.51816	3.68499	0.00150139	2.9991e-4	0.0152367	0.00472028
chr15	34343019	34343073	15204818	0	-	0.462963	(0.455,0.49]	chr15	1196859	1	CDS_START	CDS_START:CDS:EXON_MRNA	NOP10	ENSG00000182117.6	ENST00000328848.6:ENST00000557912.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.15985	3.51809	4.87633	0.0128965	2.95855e-4	0.0722356	0.00432147
chr7	6463140	6463175	8664681	0	-	0.428571	(0.42,0.455]	chr7	662826	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	3.19078	3.5180800000000003	3.84538	0.00310864	1.2691e-4	0.0274272	0.00219756
chr19	38836457	38836545	17561060	0	-	0.375	(0.36,0.39]	chr19	1475059	2	UTR3	UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	108	2	2.02049	3.5177000000000005	5.01491	9.03865e-4	2.24906e-10	0.0109731	2.7936e-8
chr5	91371003	91371102	6695319	0	-	0.30303	(0.29,0.33]	chr5	516141	25	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	3.13212	3.517675	3.90323	0.00551048	9.15815e-5	0.0414592	0.00168607
chr22	19724364	19724464	18295923	0	+	0.79	(0.59,1]	chr22	1552889	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEPT5-GP1BB:GP1BB	ENSG00000284874.1:ENSG00000203618.6	ENST00000431044.5:ENST00000366425.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	144	2	3.04928	3.51709	3.9849	1.09056e-4	6.78787e-6	0.00209828	2.00658e-4
chr8	30066086	30066139	9780480	0	-	0.584906	(0.53,0.59]	chr8	739507	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000521934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	3.2780300000000002	3.51709	3.75615	2.16536e-4	4.08373e-5	0.00361336	8.76332e-4
chr10	28610759	28610821	10990534	0	+	0.451613	(0.42,0.455]	chr10	835887	2	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6:ENST00000495268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	83	2	2.57108	3.5170649999999997	4.46305	2.26821e-4	3.92862e-8	0.00348561	2.77318e-6
chr5	53884135	53884232	6575895	0	-	0.28866000000000003	[0,0.29]	chr5	509078	3	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	3.39892	3.5168999999999997	3.63488	7.12896e-4	1.95815e-5	0.00897774	4.77469e-4
chr16	88875723	88875819	16075709	0	-	0.395833	(0.39,0.42]	chr16	1291936	10	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.2627100000000002	3.5168850000000003	4.77106	0.0192666	3.03764e-4	0.0966228	0.00472028
chr10	72275088	72275188	11111175	0	+	0.56	(0.53,0.59]	chr10	845358	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	2.96156	3.5167599999999997	4.07196	9.05921e-5	1.26681e-6	0.00182947	4.89488e-5
chr6	49636712	49636812	7729922	0	-	0.4	(0.39,0.42]	chr6	592993	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	188	2	3.02123	3.516575	4.01192	4.44696e-7	6.36317e-10	2.23067e-5	6.99211e-8
chr4	40786194	40786280	4804510	0	+	0.406977	(0.39,0.42]	chr4	396525	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	NSUN7:ARL4AP2	ENSG00000179299.17:ENSG00000248780.1	ENST00000316607.5:ENST00000381782.7:ENST00000423784.5:ENST00000507378.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	2	33	2	2.88836	3.516565	4.14477	0.0102432	2.09513e-5	0.062872	5.04211e-4
chr17	16217393	16217461	16140420	0	+	0.573529	(0.53,0.59]	chr17	1300555	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIGL	ENSG00000108474.17	ENST00000607144.4:ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000470116.2:ENST00000585034.5:ENST00000477745.5:ENST00000489009.1:ENST00000463810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	86	2	2.94928	3.516475	4.08367	9.80612e-5	1.14839e-6	0.00177549	4.9396e-5
chr1	26760935	26761015	110795	0	+	0.575	(0.53,0.59]	chr1	13275	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1:ENST00000636958.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	3.20874	3.516405	3.82407	0.0179666	0.00278422	0.0918323	0.0241009
chr17	44864929	44864997	16560061	0	-	0.544118	(0.53,0.59]	chr17	1359746	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000585616.5:ENST00000585794.5:ENST00000586654.5:ENST00000591856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	3.20874	3.516405	3.82407	0.0179666	0.00278422	0.0918323	0.0241009
chr19	797412	797497	17189423	0	+	0.647059	(0.59,1]	chr19	1410998	5	UTR5	UTR5:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000677717.1:ENST00000589575.5:ENST00000587191.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	2.93698	3.5164	4.09582	0.0015925	8.09451e-5	0.0159023	0.00167997
chr1	91727658	91727732	1164451	0	-	0.351351	(0.33,0.36]	chr1	114942	1	CDS	CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000529608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.51887	3.516325	4.51378	0.0358636	0.00118147	0.147298	0.0127276
chr2	189771866	189771902	3082850	0	-	0.333333	(0.33,0.36]	chr2	272427	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ORMDL1	ENSG00000128699.14	ENST00000392349.9:ENST00000392350.7:ENST00000325795.7:ENST00000496543.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.51887	3.516325	4.51378	0.0358636	0.00118147	0.147298	0.0127276
chrX	123625911	123625990	19198412	0	-	0.35443	(0.33,0.36]	chrX	1632528	1	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000438358.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.51887	3.516325	4.51378	0.0358636	0.00118147	0.147298	0.0127276
chr1	37575646	37575699	947323	0	-	0.45283	(0.42,0.455]	chr1	99541	2	CDS	CDS:EXON_MRNA	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000538069.2	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.05889	3.5163	3.97371	0.00524205	6.07552e-5	0.0399155	0.00121305
chr11	118407021	118407097	12157942	0	+	0.421053	(0.42,0.455]	chr11	936957	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000534385.1:ENST00000527186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	3.05889	3.5163	3.97371	0.00524205	6.07552e-5	0.0399155	0.00121305
chr4	1212040	1212139	5278763	0	-	0.69697	(0.59,1]	chr4	424832	7	UTR3	UTR3:EXON_MRNA	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000503594.5:ENST00000514596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	1.61912	3.5161849999999997	5.41325	0.0241476	3.01546e-4	0.110851	0.00472028
chr6	47624716	47624814	7171951	0	+	0.316327	(0.29,0.33]	chr6	554515	6	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	3.40549	3.51616	3.62683	6.18968e-4	1.12275e-4	0.00822794	0.00199494
chrX	49342912	49342973	18694677	0	+	0.590164	(0.59,1]	chrX	1594877	2	CDS	CDS:EXON_MRNA	GAGE2E	ENSG00000275113.1	ENST00000621907.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.78953	3.516085	4.24264	9.28839e-4	3.77126e-5	0.0105151	9.05627e-4
chr12	53295838	53295889	12885728	0	+	0.509804	(0.49,0.53]	chr12	1002251	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PFDN5:RP11-680A11.7	ENSG00000123349.15:ENSG00000288663.1	ENST00000551018.5:ENST00000550069.2:ENST00000676527.1:ENST00000677326.1:ENST00000549759.2:ENST00000677982.1:ENST00000628881.2:ENST00000679196.1:ENST00000676940.1:ENST00000676632.1:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000677199.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000678284.1:ENST00000551223.5:ENST00000549995.1:ENST00000677184.1:ENST00000552742.6:ENST00000677712.1:ENST00000550513.1:ENST00000547228.1:ENST00000678985.1:ENST00000553171.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	3.23006	3.51591	3.80176	0.00253719	9.10034e-7	0.0233955	3.69437e-5
chr12	57515149	57515242	12903027	0	+	0.548387	(0.53,0.59]	chr12	1005418	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000548944.1:ENST00000548202.5:ENST00000552914.5:ENST00000551805.1:ENST00000547665.5:ENST00000552499.5:ENST00000551172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.2596	3.51591	4.77222	0.0185443	6.67251e-4	0.0948733	0.00867533
chr11	65352240	65352336	11984144	0	+	0.5625	(0.53,0.59]	chr11	920300	6	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.36244	3.5159000000000002	4.66936	0.0131162	0.00103174	0.073569	0.0121443
chr12	6600533	6600601	13187417	0	-	0.485294	(0.455,0.49]	chr12	1032398	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000545942.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	1.96875	3.515785	5.06282	0.0480352	1.16789e-4	0.180552	0.0020505
chr3	155842525	155842619	4538259	0	-	0.308511	(0.29,0.33]	chr3	376011	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	3.48001	3.51525	3.55049	0.00126219	6.15323e-4	0.013837	0.00765848
chr6	38677196	38677294	7689642	0	-	0.377551	(0.36,0.39]	chr6	589572	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	109	2	2.80011	3.51519	4.23027	3.15429e-6	3.40433e-7	1.05339e-4	1.78572e-5
chr14	102043959	102044045	14495843	0	+	0.546512	(0.53,0.59]	chr14	1133256	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000646418.1:ENST00000642716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	50	2	3.47991	3.51496	3.55001	6.11776e-4	6.7738e-5	0.00818575	0.0013157
chr4	56501861	56501956	4849147	0	+	0.378947	(0.36,0.39]	chr4	399579	1	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	32	2	2.04221	3.51482	4.98743	0.00653435	8.82225e-5	0.0456317	0.00178337
chr12	54460376	54460471	13344042	0	-	0.463158	(0.455,0.49]	chr12	1049884	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	107	2	3.0655	3.5145600000000004	3.96362	1.74867e-5	3.94522e-8	4.7996e-4	2.51446e-6
chr1	12580522	12580606	862218	0	-	0.595238	(0.59,1]	chr1	87524	1	CDS_START	CDS_START:CDS:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	126	2	3.38886	3.51447	3.64008	5.73108e-5	4.08624e-5	0.00127091	8.76602e-4
chr17	47828500	47828585	16573265	0	-	0.6	(0.59,1]	chr17	1361417	1	CDS	CDS:UTR3:EXON_MRNA	MRPL10	ENSG00000159111.13	ENST00000351111.7:ENST00000290208.11:ENST00000414011.1:ENST00000421763.5:ENST00000466016.5:ENST00000423147.1:ENST00000480901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.68392	3.5143950000000004	4.34487	0.0202468	0.0123678	0.0984041	0.0705839
chr1	87340046	87340124	342711	0	+	0.474359	(0.455,0.49]	chr1	33719	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMO4	ENSG00000143013.13	ENST00000370544.10:ENST00000370542.1:ENST00000489303.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.66563	3.51435	4.36307	0.0043075	0.00218641	0.0334284	0.0208941
chr17	39408852	39408950	16535850	0	-	0.479592	(0.455,0.49]	chr17	1354013	14	CDS	CDS:UTR3:EXON_MRNA:INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.66563	3.51435	4.36307	0.0043075	0.00218641	0.0334284	0.0208941
chr2	231083664	231083763	2423309	0	+	0.464646	(0.455,0.49]	chr2	218338	2	CDS	CDS:UTR3:EXON_MRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.66563	3.51435	4.36307	0.0043075	0.00218641	0.0334284	0.0208941
chr8	140516581	140516677	9641883	0	+	0.479167	(0.455,0.49]	chr8	730104	15	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.66563	3.51435	4.36307	0.0043075	0.00218641	0.0334284	0.0208941
chr17	66808376	66808474	16326802	0	+	0.387755	(0.36,0.39]	chr17	1324591	45	UTR3	UTR3:EXON_MRNA	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.78659	3.514265	4.24194	0.0132982	0.00276729	0.0740932	0.0247437
chr19	12925089	12925174	17472078	0	-	0.658824	(0.59,1]	chr19	1463343	1	CDS	CDS:UTR3:EXON_MRNA	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5:ENST00000593021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.58138	3.5140450000000003	4.44671	0.00931497	0.00235862	0.0586162	0.0215532
chr1	25360659	25360705	104291	0	+	0.478261	(0.455,0.49]	chr1	12230	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	2.80517	3.5137150000000004	4.22226	1.00884e-4	1.23185e-5	0.00181604	3.58356e-4
chr1	35387002	35387094	137115	0	+	0.423913	(0.42,0.455]	chr1	16855	1	CDS	CDS:EXON_MRNA	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.96788	3.51371	4.05954	0.00617886	0.00109784	0.0439741	0.0119666
chrX	53628556	53628620	19078201	0	-	0.4375	(0.42,0.455]	chrX	1622997	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.96788	3.51371	4.05954	0.00617886	0.00109784	0.0439741	0.0119666
chr1	101786632	101786730	1200896	0	-	0.561224	(0.53,0.59]	chr1	117316	4	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	49	2	3.34735	3.51364	3.67993	3.22778e-4	1.46925e-4	0.0046122	0.0026854
chr3	13341995	13342059	4046465	0	-	0.5	(0.49,0.53]	chr3	339613	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	3.02891	3.5136200000000004	3.99833	8.23332e-4	1.95792e-6	0.0102121	7.01677e-5
chr5	43313355	43313433	6560406	0	-	0.666667	(0.59,1]	chr5	508391	1	UTR5	UTR5:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	2.99438	3.5135050000000003	4.03263	0.00776449	1.11254e-4	0.050813	0.00213212
chr19	34377734	34377807	17300324	0	+	0.561644	(0.53,0.59]	chr19	1429844	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	178	2	3.01547	3.5134999999999996	4.01153	6.80891e-7	1.92278e-7	2.8857e-5	1.10123e-5
chr7	66639869	66639960	8305442	0	+	0.527473	(0.49,0.53]	chr7	633160	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KCTD7:RP11-792A8.5	ENSG00000243335.10:ENSG00000284461.2	ENST00000639828.2:ENST00000640385.1:ENST00000275532.8:ENST00000443322.1:ENST00000503687.2:ENST00000639879.1:ENST00000640851.1:ENST00000638524.1:ENST00000449064.6:ENST00000638540.1:ENST00000640234.1:ENST00000640601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	2.2359	3.51338	4.79086	0.00449268	4.20783e-4	0.0343656	0.00611538
chr11	71434591	71434681	12444391	0	-	0.577778	(0.53,0.59]	chr11	966968	3	UTR3	UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.72478	3.513365	4.30195	0.00421989	0.00324675	0.0328662	0.0282494
chr1	160266929	160267028	1328438	0	-	0.515152	(0.49,0.53]	chr1	135908	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-574F21.3:RPSAP18	ENSG00000258465.8:ENSG00000224261.2	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000453374.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	3	31	2	2.59881	3.513355	4.4279	0.00196987	0.00184545	0.0193972	0.0178046
chr9	130128639	130128700	10488425	0	+	0.508197	(0.49,0.53]	chr9	791995	1	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	2.59881	3.513355	4.4279	0.00196987	0.00184545	0.0193972	0.0178046
chr10	80164052	80164143	11593292	0	-	0.527473	(0.49,0.53]	chr10	883057	1	CDS	CDS:EXON_MRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.08487	3.51332	3.94177	0.0104929	6.09273e-4	0.063428	0.00760626
chr22	20953259	20953356	18300216	0	+	0.546392	(0.53,0.59]	chr22	1553647	36	UTR3	UTR3:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	86	2	2.9246	3.5133	4.102	1.13965e-4	1.01285e-6	0.00217669	4.03248e-5
chr3	9475991	9476091	3298370	0	+	0.59	(0.53,0.59]	chr3	289608	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	1.90953	3.5133	5.11707	0.0517711	1.35965e-4	0.193577	0.00231202
chr9	5805697	5805785	10542753	0	-	0.420455	(0.42,0.455]	chr9	799398	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	3.17433	3.512915	3.8515	0.0119089	3.82052e-4	0.0686664	0.0052929
chr10	29698094	29698174	10993869	0	+	0.475	(0.455,0.49]	chr10	836208	3	EXON_PSEUDO	EXON_PSEUDO	CKS1BP2	ENSG00000225976.5	ENST00000497342.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	2.85172	3.5128950000000003	4.17407	0.010864	1.754e-5	0.0643837	4.38078e-4
chr20	482260	482360	17871436	0	-	0.4	(0.39,0.42]	chr20	1511949	36	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.19588	3.512805	3.82973	0.00321212	1.3728e-4	0.0280721	0.00232973
chr7	5603258	5603358	8112096	0	+	0.59	(0.53,0.59]	chr7	620026	1	CDS_START	CDS_START:CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	3.21941	3.512755	3.8061	0.00266171	8.37944e-6	0.0240332	2.38248e-4
chr9	131430459	131430559	10498104	0	+	0.31	(0.29,0.33]	chr9	793472	2	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.38576	3.5127499999999996	4.63974	0.0439193	4.81181e-4	0.163572	0.00677016
chr1	19219669	19219698	877137	0	-	0.448276	(0.42,0.455]	chr1	90430	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7:ENST00000461353.1:ENST00000486405.1:ENST00000486238.1:ENST00000494770.6:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.17397	3.512735	3.8515	0.0119089	0.0031821	0.0686664	0.0267094
chr11	57740882	57740973	11952444	0	+	0.43956	(0.42,0.455]	chr11	914746	8	UTR3	UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000378312.8:ENST00000529403.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.17397	3.512735	3.8515	0.0119089	0.0031821	0.0686664	0.0267094
chr2	24820913	24821010	1682632	0	+	0.443299	(0.42,0.455]	chr2	164503	17	UTR3	UTR3:EXON_MRNA	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000380834.7:ENST00000260662.2	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.17397	3.512735	3.8515	0.0119089	0.0031821	0.0686664	0.0267094
chr2	108763335	108763434	1982941	0	+	0.444444	(0.42,0.455]	chr2	188310	2	CDS	CDS:EXON_MRNA	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.17397	3.512735	3.8515	0.0119089	0.0031821	0.0686664	0.0267094
chr9	111934973	111935072	10420398	0	+	0.434343	(0.42,0.455]	chr9	784485	21	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.17397	3.512735	3.8515	0.0119089	0.0031821	0.0686664	0.0267094
chr19	7962300	7962399	17447933	0	-	0.292929	(0.29,0.33]	chr19	1458189	8	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.99415	3.5126950000000003	5.03124	0.0333928	9.06368e-5	0.140128	0.00167558
chrX	101398772	101398872	19151696	0	-	0.41	(0.39,0.42]	chrX	1628678	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLA	ENSG00000102393.14	ENST00000674142.1:ENST00000468823.2:ENST00000218516.4:ENST00000493905.6:ENST00000479445.2:ENST00000466414.2:ENST00000675968.1:ENST00000649178.1:ENST00000676156.1:ENST00000675592.1:ENST00000676372.1:ENST00000674127.1:ENST00000675799.1:ENST00000480513.6:ENST00000486121.6:ENST00000674634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.69374	3.51252	4.3313	0.00386013	0.00209984	0.0310764	0.0204266
chr2	33252676	33252760	1721348	0	+	0.535714	(0.53,0.59]	chr2	168694	1	CDS	CDS:EXON_MRNA	LTBP1	ENSG00000049323.16	ENST00000404816.7:ENST00000418533.6:ENST00000402934.5:ENST00000404525.5:ENST00000407925.5:ENST00000413303.5:ENST00000468091.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.86102	3.512425	4.16383	0.00659193	0.0017805	0.0454205	0.0172974
chr1	70435124	70435177	281488	0	+	0.528302	(0.49,0.53]	chr1	30306	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CTH	ENSG00000116761.12	ENST00000411986.6:ENST00000370938.8:ENST00000346806.2:ENST00000482383.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	1.99044	3.512125	5.03381	0.0435903	1.49689e-4	0.170594	0.0024973
chrX	50171196	50171246	19066190	0	-	0.42	(0.39,0.42]	chrX	1621444	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000202495.1	ENST00000365625.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	8	97	2	2.9483	3.5118549999999997	4.07541	1.18306e-4	1.38114e-8	0.00224891	1.02588e-6
chr17	59697878	59697978	16619194	0	-	0.53	(0.49,0.53]	chr17	1365580	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PTRH2	ENSG00000141378.15	ENST00000587935.1:ENST00000409433.2:ENST00000393038.3:ENST00000470557.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.33324	3.511805	3.69037	0.0226513	0.00162947	0.10505	0.0169972
chr14	49586284	49586346	14613988	0	-	0.596774	(0.59,1]	chr14	1144058	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2:ENST00000557519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	583	2	3.45961	3.511555	3.5635	3.60406e-7	3.3716e-8	1.88058e-5	2.19621e-6
chr1	167772274	167772345	524417	0	+	0.450704	(0.42,0.455]	chr1	56260	1	CDS	CDS:EXON_MRNA:INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	3.19078	3.511515	3.83225	0.00310864	6.45764e-6	0.0274272	1.92232e-4
chr9	112234819	112234897	10803039	0	-	0.512821	(0.49,0.53]	chr9	818445	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	3.05347	3.5113950000000003	3.96932	1.85938e-5	3.96001e-8	5.04972e-4	2.5225e-6
chr17	48927518	48927614	16256021	0	+	0.541667	(0.53,0.59]	chr17	1317570	5	UTR3	UTR3:EXON_MRNA	UBE2Z	ENSG00000159202.18	ENST00000360943.10:ENST00000513342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.16037	3.5113450000000004	4.86232	0.0254312	4.57805e-4	0.117089	0.00608573
chr22	20888531	20888630	18299826	0	+	0.535354	(0.53,0.59]	chr22	1553630	8	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.16037	3.5113450000000004	4.86232	0.0254312	4.57805e-4	0.117089	0.00608573
chr2	86144624	86144709	2772783	0	-	0.529412	(0.49,0.53]	chr2	246309	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.95291	3.511165	4.06942	0.00119735	3.44689e-5	0.0134293	7.57659e-4
chr2	47375233	47375299	1784368	0	+	0.348485	(0.33,0.36]	chr2	172398	1	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000474691.1:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	74	2	3.14227	3.5111049999999997	3.87994	1.5366e-4	7.57432e-8	0.00279114	4.39691e-6
chr8	38139162	38139254	9291783	0	+	0.5	(0.49,0.53]	chr8	710654	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	3.26122	3.5111049999999997	3.76099	2.00194e-4	4.03666e-6	0.0034021	1.29819e-4
chr8	47889152	47889222	9816689	0	-	0.528571	(0.49,0.53]	chr8	742755	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.9035	3.5110900000000003	5.11868	0.0295204	9.66505e-5	0.129773	0.00175267
chr2	159461294	159461393	2959341	0	-	0.40404	(0.39,0.42]	chr2	262618	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	BAZ2B	ENSG00000123636.18	ENST00000392782.5:ENST00000392783.7:ENST00000467184.5:ENST00000482503.5:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	40	2	3.44923	3.511085	3.57294	0.00105208	3.67751e-5	0.0123035	8.00584e-4
chr7	19697625	19697724	8711924	0	-	0.40404	(0.39,0.42]	chr7	665210	23	UTR3	UTR3:EXON_MRNA	POLR1F	ENSG00000105849.6	ENST00000222567.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.38313	3.51098	4.63883	0.0128066	5.68159e-4	0.0725185	0.0077844
chr1	51787789	51787884	191694	0	+	0.4	(0.39,0.42]	chr1	24578	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	3.00376	3.510835	4.01791	6.87502e-5	4.78174e-5	0.00133223	0.00109049
chr10	70883685	70883773	11562566	0	-	0.454545	(0.42,0.455]	chr10	879859	3	UTR3	UTR3:EXON_MRNA:INTRON	PCBD1	ENSG00000166228.9	ENST00000493961.5:ENST00000299299.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	83	2	3.50016	3.5107	3.52124	9.02287e-6	1.66893e-6	2.78052e-4	6.14586e-5
chr19	10317357	10317453	17459303	0	-	0.40625	(0.39,0.42]	chr19	1460720	13	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.34349	3.51057	4.67765	0.0169272	7.04737e-4	0.0890655	0.00848325
chr3	170129358	170129455	4573911	0	-	0.494845	(0.49,0.53]	chr3	378573	8	CDS	CDS:EXON_MRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000497171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.03065	3.5104949999999997	4.99034	0.0189484	1.6002e-4	0.0958835	0.00286408
chr7	97854629	97854680	8940632	0	-	0.54902	(0.53,0.59]	chr7	682241	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	28	2	2.71318	3.5104699999999998	4.30776	0.00407289	0.00340745	0.0324137	0.0283456
chr1	155318855	155318928	483661	0	+	0.410959	(0.39,0.42]	chr1	50790	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000368356.9:ENST00000467076.5:ENST00000491013.5:ENST00000356657.10:ENST00000612683.1:ENST00000477057.5:ENST00000492887.5:ENST00000492244.5:ENST00000490140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	56	2	3.30353	3.51046	3.71739	3.96559e-5	1.41698e-5	9.4815e-4	3.66245e-4
chr19	15831261	15831356	17246546	0	+	0.589474	(0.53,0.59]	chr19	1422747	9	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644590.1:ENST00000644502.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3	lncRNA	lncRNA	lncRNA	lncRNA	5	66	2	2.87438	3.510415	4.14645	1.55101e-4	2.32261e-5	0.00258327	6.06413e-4
chr17	4945016	4945084	16094341	0	+	0.529412	(0.49,0.53]	chr17	1294898	1	UTR3	UTR3:EXON_MRNA	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000572382.5:ENST00000576965.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.60116	3.510235	4.41931	0.0056515	3.4941e-6	0.0422191	1.14163e-4
chr2	53866746	53866813	2664109	0	-	0.507463	(0.49,0.53]	chr2	238119	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.38683	3.510105	4.63338	0.012654	9.56909e-4	0.0718207	0.010724
chr7	133034690	133034774	9078002	0	-	0.571429	(0.53,0.59]	chr7	693065	2	EXON_PSEUDO	EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	protein_coding	miRNA:protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	2	42	2	2.7898	3.5100100000000003	4.23022	0.0128364	1.38676e-5	0.0719798	3.5918e-4
chr6	85678648	85678748	7826466	0	-	0.61	(0.59,1]	chr6	599652	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000658871.1:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000425170.2:ENST00000433843.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	27	596	2	3.33242	3.51	3.68758	1.52888e-7	1.0642e-7	9.0748e-6	5.88867e-6
chr15	77484627	77484725	15037366	0	+	0.367347	(0.36,0.39]	chr15	1182624	18	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	1.81435	3.509955	5.20556	0.0302191	4.46552e-5	0.129773	9.34801e-4
chr4	70909045	70909145	4878177	0	+	0.32	(0.29,0.33]	chr4	401866	61	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.77585	3.50986	4.24387	0.0143131	0.00263476	0.0780602	0.0239118
chr9	5784966	5785065	10542536	0	-	0.313131	(0.29,0.33]	chr9	799356	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.77585	3.50986	4.24387	0.0143131	0.00263476	0.0780602	0.0239118
chrX	49591096	49591196	18695228	0	+	0.32	(0.29,0.33]	chrX	1595047	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAGE2A	ENSG00000189064.8	ENST00000362097.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.77585	3.50986	4.24387	0.0143131	0.00263476	0.0780602	0.0239118
chr1	11069558	11069644	859171	0	-	0.488372	(0.455,0.49]	chr1	86807	1	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000469634.5:ENST00000478271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	3.20348	3.5098599999999998	3.81624	3.27782e-4	1.48205e-4	0.0046686	0.00269793
chr1	40072998	40073095	954665	0	-	0.402062	(0.39,0.42]	chr1	100850	4	UTR3	UTR3:EXON_MRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	3.08228	3.509825	3.93737	7.80292e-5	1.51045e-5	0.00162998	3.86172e-4
chr7	151484736	151484804	9131187	0	-	0.382353	(0.36,0.39]	chr7	698118	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000472642.5:ENST00000478470.5:ENST00000496004.5:ENST00000470370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	2.64542	3.50976	4.3741	6.12028e-4	4.74881e-6	0.00763546	1.63715e-4
chr5	179729643	179729742	6414470	0	+	0.323232	(0.29,0.33]	chr5	499211	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	296	2	3.29818	3.509665	3.72115	9.5686e-9	2.34286e-11	8.19444e-7	3.72723e-9
chr1	36339816	36339913	940152	0	-	0.57732000000000006	(0.53,0.59]	chr1	98983	3	UTR3	UTR3:EXON_MRNA	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.02054	3.509365	3.99819	0.0111308	0.00577011	0.0665375	0.0426551
chr11	34139190	34139287	11905888	0	+	0.56701	(0.53,0.59]	chr11	909711	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1:ENST00000530017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	3.02054	3.509365	3.99819	0.0111308	0.00577011	0.0665375	0.0426551
chr17	39988750	39988819	16222488	0	+	0.536232	(0.53,0.59]	chr17	1311730	2	CDS	CDS:UTR3:EXON_MRNA	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000580980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.02054	3.509365	3.99819	0.0111308	0.00577011	0.0665375	0.0426551
chr2	47471003	47471062	1785196	0	+	0.338983	(0.33,0.36]	chr2	172505	1	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.97606	3.5093550000000002	4.04265	0.00871774	3.90477e-5	0.0558165	8.43777e-4
chr1	159919747	159919835	1326687	0	-	0.556818	(0.53,0.59]	chr1	135587	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	122	2	3.03003	3.509335	3.98864	1.06499e-5	2.31578e-7	2.91188e-4	1.29506e-5
chr15	41380954	41381050	14886257	0	+	0.34375	(0.33,0.36]	chr15	1169383	9	UTR3	UTR3:EXON_MRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.51887	3.509335	4.4998	0.0358636	1.74876e-6	0.147298	6.39864e-5
chr19	18031911	18032005	17256842	0	+	0.553191	(0.53,0.59]	chr19	1424994	14	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	21	2	2.35511	3.509295	4.66348	0.0445399	0.00107799	0.172163	0.0118238
chr7	140800361	140800419	9110706	0	-	0.586207	(0.53,0.59]	chr7	695368	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000644650.1:ENST00000647434.1:ENST00000497784.2:ENST00000642272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	21	2	2.35511	3.509295	4.66348	0.0445399	0.00107799	0.172163	0.0118238
chrX	47228916	47228991	18687070	0	+	0.56	(0.53,0.59]	chrX	1593352	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000462827.2:ENST00000520141.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.35511	3.509295	4.66348	0.0445399	0.00107799	0.172163	0.0118238
chr12	54347766	54347829	12892125	0	+	0.492063	(0.49,0.53]	chr12	1003012	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1:ENST00000550713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	64	2	2.70962	3.5092	4.30878	1.8355e-4	7.12421e-6	0.00296537	2.28404e-4
chr1	156136297	156136381	486139	0	+	0.630952	(0.59,1]	chr1	51290	2	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	197	2	2.16689	3.5091849999999996	4.85148	0.00209758	2.00623e-8	0.0204266	1.40889e-6
chr19	58549490	58549570	17413351	0	+	0.6375	(0.59,1]	chr19	1451212	3	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595974.5:ENST00000600840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	79	2	3.27003	3.50899	3.74795	4.30112e-4	3.45884e-4	0.00620274	0.00486309
chr2	61872522	61872588	2691370	0	-	0.439394	(0.42,0.455]	chr2	240543	2	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	76	2	2.95467	3.5089550000000003	4.06324	3.71937e-5	1.14038e-6	8.07933e-4	4.91686e-5
chr6	43523867	43523967	7708074	0	-	0.49	(0.455,0.49]	chr6	591456	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.99697	3.5086850000000003	4.0204	0.00736097	9.57891e-4	0.0490627	0.0107247
chr8	22003902	22003966	9222121	0	+	0.484375	(0.455,0.49]	chr8	705052	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000522015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.99697	3.5086850000000003	4.0204	0.00736097	9.57891e-4	0.0490627	0.0107247
chr12	56751116	56751195	13352891	0	-	0.303797	(0.29,0.33]	chr12	1051939	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5:ENST00000552408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.45373	3.5085450000000002	4.56336	0.0156405	8.8231e-4	0.084273700000000007	0.0101404
chr19	32712826	32712922	17293927	0	+	0.3125	(0.29,0.33]	chr19	1429046	10	UTR3	UTR3:EXON_MRNA	NUDT19	ENSG00000213965.4	ENST00000397061.4	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.45373	3.5085450000000002	4.56336	0.0156405	8.8231e-4	0.084273700000000007	0.0101404
chr19	54173681	54173772	17627653	0	-	0.582418	(0.53,0.59]	chr19	1488015	4	UTR3	UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.14885	3.50854	4.86823	0.0262993	4.35895e-4	0.117164	0.00623608
chr2	7141464	7141544	2497148	0	-	0.5375	(0.53,0.59]	chr2	225498	4	EXON_SMALL	EXON_SMALL	RN7SKP112	ENSG00000223145.1	ENST00000411213.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	2	27	2	2.45844	3.50852	4.5586	0.00930921	0.00161229	0.0587563	0.0169168
chr3	52527616	52527667	4183400	0	-	0.568627	(0.53,0.59]	chr3	352892	1	CDS	CDS:UTR3:EXON_MRNA	NT5DC2	ENSG00000168268.11	ENST00000463947.5:ENST00000307076.8:ENST00000422318.7:ENST00000492555.5:ENST00000459839.5:ENST00000466112.5:ENST00000478091.1:ENST00000489316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.35511	3.50852	4.66193	0.0445399	7.20737e-7	0.172163	3.019e-5
chr1	89933366	89933465	349097	0	+	0.474747	(0.455,0.49]	chr1	34169	3	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.20069	3.508465	3.81624	0.00285821	1.48205e-4	0.0245841	0.00269793
chr22	41663621	41663715	18381715	0	+	0.5	(0.49,0.53]	chr22	1564735	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	3.49143	3.508285	3.52514	6.13943e-5	4.98361e-5	0.00122382	0.0011306
chr20	49078560	49078622	17811682	0	+	0.274194	[0,0.29]	chr20	1506540	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.94841	3.508165	5.06792	0.0427374	6.88295e-5	0.168094	0.00133223
chr10	46014497	46014552	11471020	0	-	0.472727	(0.455,0.49]	chr10	874860	2	CDS	CDS:UTR5:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.20348	3.508115	3.81275	0.0138827	3.27782e-4	0.0760883	0.0046686
chr18	23535622	23535700	17037298	0	-	0.487179	(0.455,0.49]	chr18	1400538	3	CDS	CDS:EXON_MRNA	NPC1	ENSG00000141458.13	ENST00000586150.5:ENST00000269228.10:ENST00000588867.1:ENST00000591051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	3.20348	3.508115	3.81275	0.0138827	3.27782e-4	0.0760883	0.0046686
chr3	52695189	52695245	4184953	0	-	0.464286	(0.455,0.49]	chr3	353154	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000394783.7:ENST00000491606.5:ENST00000481643.5:ENST00000484163.5:ENST00000463827.1:ENST00000480080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	3.20348	3.508115	3.81275	0.0138827	3.27782e-4	0.0760883	0.0046686
chr8	56963892	56963978	9836830	0	-	0.465116	(0.455,0.49]	chr8	744434	1	CDS	CDS:UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9:ENST00000520392.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	3.20348	3.508115	3.81275	0.0138827	3.27782e-4	0.0760883	0.0046686
chrX	152767177	152767270	19272360	0	-	0.505376	(0.49,0.53]	chrX	1637049	5	CDS	CDS:EXON_MRNA	MAGEA6	ENSG00000197172.10	ENST00000329342.9:ENST00000616035.4:ENST00000457643.1:ENST00000412733.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.25514	3.508065	3.76099	0.00227467	2.00194e-4	0.0209546	0.0034021
chr2	26194569	26194638	2565675	0	-	0.521739	(0.49,0.53]	chr2	230545	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	3.33099	3.50799	3.68499	2.9991e-4	1.59567e-4	0.00472028	0.00263091
chr4	1025831	1025928	4678989	0	+	0.515464	(0.49,0.53]	chr4	387668	6	UTR3	UTR3:EXON_MRNA	FGFRL1	ENSG00000127418.15	ENST00000398484.6:ENST00000510644.6:ENST00000264748.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.33324	3.50785	3.68246	0.00162947	3.06313e-4	0.0169972	0.00442973
chr19	3547271	3547364	17427590	0	-	0.526882	(0.49,0.53]	chr19	1454101	1	CDS	CDS:UTR3:EXON_MRNA	MFSD12	ENSG00000161091.14	ENST00000615073.4:ENST00000355415.7:ENST00000588918.5:ENST00000389395.7:ENST00000589063.5:ENST00000589995.1:ENST00000585814.1:ENST00000592652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.11892	3.50781	3.8967	0.0128791	0.00398244	0.0725185	0.0322851
chr4	6882616	6882713	4705509	0	+	0.505155	(0.49,0.53]	chr4	390634	18	UTR3	UTR3:EXON_MRNA	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.11892	3.50781	3.8967	0.0128791	0.00398244	0.0725185	0.0322851
chr2	96275256	96275349	2790254	0	-	0.537634	(0.53,0.59]	chr2	248683	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.05734	3.5077949999999998	4.95825	0.0167029	2.87508e-4	0.0883198	0.00457439
chr2	65261246	65261319	1854299	0	+	0.465753	(0.455,0.49]	chr2	175970	1	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.15985	3.50776	4.85567	0.0128965	1.2429e-7	0.0722356	6.73437e-6
chr17	41757633	41757708	16543003	0	-	0.68	(0.59,1]	chr17	1356270	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	3.23348	3.50768	3.78188	0.00352837	3.33896e-4	0.0298518	0.00472923
chr2	86492218	86492318	1927464	0	+	0.33	(0.29,0.33]	chr2	181683	2	UTR3	UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000491383.5:ENST00000470160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	2.81897	3.5075600000000002	4.19615	2.43076e-4	2.2256e-5	0.00367789	5.84518e-4
chr9	87525388	87525475	10345644	0	+	0.471264	(0.455,0.49]	chr9	778566	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	DAPK1:RP11-40C6.2	ENSG00000196730.13:ENSG00000219928.2	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5:ENST00000401543.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	23	248	2	3.40931	3.50756	3.60581	1.38811e-8	4.77501e-9	1.1251e-6	4.08613e-7
chr22	19962626	19962676	18296453	0	+	0.58	(0.53,0.59]	chr22	1552988	1	CDS	CDS:UTR5:EXON_MRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	3.06939	3.50727	3.94515	6.54756e-4	3.18429e-6	0.00860229	1.06148e-4
chr16	18542171	18542261	15876713	0	-	0.488889	(0.455,0.49]	chr16	1269199	1	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000564355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.30139	3.5072200000000002	4.71305	0.0530131	3.85068e-7	0.195536	1.76303e-5
chr2	171729780	171729853	2207891	0	+	0.410959	(0.39,0.42]	chr2	202093	2	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.0503	3.5072	3.9641	0.00570576	6.346e-5	0.0424438	0.00124725
chr22	42060278	42060378	18520709	0	-	0.5	(0.49,0.53]	chr22	1581498	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NAGA	ENSG00000198951.12	ENST00000396398.8:ENST00000403363.5:ENST00000402937.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.38097	3.507175	4.63338	0.0425419	9.56909e-4	0.167547	0.010724
chr6	43355157	43355255	7707669	0	-	0.5	(0.49,0.53]	chr6	591327	6	CDS	CDS:EXON_MRNA	ZNF318	ENSG00000171467.16	ENST00000605935.5:ENST00000361428.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.38097	3.507175	4.63338	0.0425419	9.56909e-4	0.167547	0.010724
chr16	89560680	89560773	15810076	0	+	0.645161	(0.59,1]	chr16	1258667	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	91	2102	2	3.00535	3.507145	4.00894	3.62716e-7	1.02651e-10	1.89167e-5	1.3908e-8
chr1	39564482	39564542	952957	0	-	0.566667	(0.53,0.59]	chr1	100540	2	CDS	CDS:UTR3:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000525045.5:ENST00000477556.1:ENST00000461578.1:ENST00000483770.1:ENST00000525669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	2.34461	3.5069850000000002	4.66936	0.0457008	0.00103174	0.168044	0.0121443
chr14	94079024	94079121	14775430	0	-	0.56701	(0.53,0.59]	chr14	1157311	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.34461	3.5069850000000002	4.66936	0.0457008	0.00103174	0.168044	0.0121443
chrX	300708	300806	18549169	0	+	0.530612	(0.53,0.59]	chrX	1585413	15	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	3.03277	3.5069600000000003	3.98115	6.28226e-5	5.76577e-5	0.00127765	0.00124286
chr11	14278864	14278958	12280522	0	-	0.265957	[0,0.29]	chr11	949479	11	UTR3	UTR3:EXON_MRNA	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000414023.6:ENST00000529237.5:ENST00000534746.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.4397	3.50693	4.57416	0.0388194	6.75561e-4	0.149227	0.00873562
chr11	106097205	106097304	12122393	0	+	0.272727	[0,0.29]	chr11	933147	4	UTR3	UTR3:EXON_MRNA	AASDHPPT	ENSG00000149313.11	ENST00000525660.1:ENST00000278618.9:ENST00000534152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.4397	3.50693	4.57416	0.0388194	6.75561e-4	0.149227	0.00873562
chr18	62979795	62979886	16924251	0	+	0.252747	[0,0.29]	chr18	1392847	5	UTR3	UTR3:EXON_MRNA	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.4397	3.50693	4.57416	0.0388194	6.75561e-4	0.149227	0.00873562
chr3	179588109	179588208	3928704	0	+	0.252525	[0,0.29]	chr3	330221	2	UTR3	UTR3:EXON_MRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000461125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.4397	3.50693	4.57416	0.0388194	6.75561e-4	0.149227	0.00873562
chr3	196347661	196347760	4664941	0	-	0.252525	[0,0.29]	chr3	385869	1	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.4397	3.50693	4.57416	0.0388194	6.75561e-4	0.149227	0.00873562
chr8	30106847	30106946	9252533	0	+	0.262626	[0,0.29]	chr8	708866	11	UTR3	UTR3:EXON_MRNA:INTRON	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.4397	3.50693	4.57416	0.0388194	6.75561e-4	0.149227	0.00873562
chr12	6526286	6526371	12713501	0	+	0.588235	(0.53,0.59]	chr12	986587	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000542492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.0099	3.5069150000000002	4.00393	0.0108084	0.00600486	0.064368	0.042887
chr17	1676573	1676642	16401560	0	-	0.550725	(0.53,0.59]	chr17	1334929	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000576407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.0099	3.5069150000000002	4.00393	0.0108084	0.00600486	0.064368	0.042887
chr18	12325749	12325843	16762279	0	+	0.531915	(0.53,0.59]	chr18	1382538	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000590967.5:ENST00000591208.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.0099	3.5069150000000002	4.00393	0.0108084	0.00600486	0.064368	0.042887
chr5	69177238	69177290	6019368	0	+	0.384615	(0.36,0.39]	chr5	471253	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000505500.5:ENST00000507798.1:ENST00000513102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	3.11463	3.5069049999999997	3.89918	1.14911e-4	1.0624e-4	0.00205241	0.00203731
chr1	45013989	45014070	174340	0	+	0.580247	(0.53,0.59]	chr1	22548	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5:ENST00000490385.5:ENST00000460906.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000496439.1:ENST00000652514.1:ENST00000473012.1:ENST00000472254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	63	2	3.43342	3.506865	3.58031	8.93729e-5	3.64147e-5	0.00165837	8.79008e-4
chr22	30977625	30977724	18344863	0	+	0.454545	(0.42,0.455]	chr22	1559168	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	2.76161	3.506815	4.25202	9.19052e-4	1.07036e-5	0.0111046	2.92107e-4
chr8	47970784	47970876	9316226	0	+	0.423913	(0.42,0.455]	chr8	713563	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000517709.1:ENST00000648554.1:ENST00000519470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	2.3277	3.506815	4.68593	0.00333145	4.87807e-7	0.0286606	2.16171e-5
chr6	160063486	160063558	7528520	0	+	0.555556	(0.53,0.59]	chr6	574848	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	3.46349	3.5067500000000003	3.55001	9.2216e-4	6.11776e-4	0.0104432	0.00818575
chr6	170657228	170657328	7556957	0	+	0.56	(0.53,0.59]	chr6	576995	168	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	2	37	2	3.46349	3.5067500000000003	3.55001	9.2216e-4	6.11776e-4	0.0104432	0.00818575
chr11	57718043	57718140	12395368	0	-	0.484536	(0.455,0.49]	chr11	958899	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP42	ENSG00000213592.4	ENST00000530952.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	3.20069	3.5067199999999996	3.81275	0.0138827	0.00285821	0.0760883	0.0245841
chr14	64454722	64454774	14344195	0	+	0.480769	(0.455,0.49]	chr14	1121387	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000651891.1:ENST00000556284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.20069	3.5067199999999996	3.81275	0.0138827	0.00285821	0.0760883	0.0245841
chr6	160083949	160084027	7528744	0	+	0.461538	(0.455,0.49]	chr6	574924	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.20069	3.5067199999999996	3.81275	0.0138827	0.00285821	0.0760883	0.0245841
chr1	11068007	11068084	859152	0	-	0.402597	(0.39,0.42]	chr1	86797	1	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000490565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr11	31678496	31678595	11893639	0	+	0.414141	(0.39,0.42]	chr11	908629	142	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr11	75007080	75007178	12021776	0	+	0.418367	(0.39,0.42]	chr11	926843	7	UTR3	UTR3:EXON_MRNA:INTRON	NEU3	ENSG00000162139.10	ENST00000531509.5:ENST00000529024.1:ENST00000294064.9	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr15	34172661	34172760	15203300	0	-	0.414141	(0.39,0.42]	chr15	1196678	62	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr22	41656902	41656967	18381643	0	+	0.4	(0.39,0.42]	chr22	1564717	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2:ENST00000478914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr5	138917741	138917819	6247922	0	+	0.397436	(0.39,0.42]	chr5	486811	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000520400.5:ENST00000522013.5:ENST00000523298.5:ENST00000523685.5:ENST00000517533.5:ENST00000522052.5:ENST00000540387.5:ENST00000521368.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr8	85214920	85214978	9919949	0	-	0.396552	(0.39,0.42]	chr8	749200	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000615071.1:ENST00000611854.4:ENST00000615697.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.86368	3.5062699999999998	4.14886	0.0101619	0.00415881	0.0627153	0.0325842
chr12	110332596	110332685	13085758	0	+	0.393258	(0.39,0.42]	chr12	1020502	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000547050.1:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	93	2	1.87119	3.50626	5.14133	0.0373134	7.16109e-11	0.152293	1.01231e-8
chr5	134158527	134158577	6843707	0	-	0.36	(0.33,0.36]	chr5	523626	1	CDS	CDS:UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.78095	3.5061999999999998	4.23145	0.00388614	1.158e-5	0.0322851	3.09867e-4
chr1	19623478	19623578	87090	0	+	0.44	(0.42,0.455]	chr1	9748	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MICOS10:NBL1:MICOS10-NBL1	ENSG00000173436.15:ENSG00000158747.15:ENSG00000270136.6	ENST00000648702.1:ENST00000617872.4:ENST00000602662.1:ENST00000322753.7:ENST00000486890.5:ENST00000462646.5:ENST00000467029.5:ENST00000481464.5:ENST00000498642.5:ENST00000602293.5:ENST00000602384.5:ENST00000602450.1:ENST00000485362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.72686	3.5061799999999996	4.2855	0.00330337	8.02587e-6	0.027613	2.50919e-4
chr17	61965190	61965282	16628434	0	-	0.391304	(0.39,0.42]	chr17	1366865	3	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	3.35466	3.5061299999999997	3.6576	1.40185e-4	2.40332e-5	0.00236775	6.22273e-4
chr6	159789624	159789703	8049182	0	-	0.696203	(0.59,1]	chr6	615308	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TCP1	ENSG00000120438.12	ENST00000392168.6:ENST00000543532.5:ENST00000538128.5:ENST00000537390.5:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	144	2	3.198	3.506055	3.81411	4.75439e-5	1.87674e-5	0.00108757	4.60644e-4
chr11	32587011	32587045	11898145	0	+	0.441176	(0.42,0.455]	chr11	908888	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	39	2	2.57051	3.506005	4.4415	0.0265466	2.94164e-6	0.120071	9.91141e-5
chr15	58640868	58640960	15311120	0	-	0.402174	(0.39,0.42]	chr15	1208319	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.70591	3.505605	4.3053	0.0185716	7.30538e-6	0.0932453	2.13219e-4
chr7	88206379	88206477	8914217	0	-	0.408163	(0.39,0.42]	chr7	680418	14	UTR3	UTR3:EXON_MRNA	SRI	ENSG00000075142.14	ENST00000265729.7:ENST00000419179.5:ENST00000472930.6:ENST00000490437.5:ENST00000394641.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.70591	3.505605	4.3053	0.0185716	7.30538e-6	0.0932453	2.13219e-4
chr11	6613260	6613359	12249908	0	-	0.50505	(0.49,0.53]	chr11	946834	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	3.17797	3.50558	3.83319	1.34601e-4	7.56373e-6	0.00249552	2.18647e-4
chr21	34096863	34096961	18104985	0	+	0.418367	(0.39,0.42]	chr21	1534981	17	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	7	63	2	2.77539	3.5055	4.23561	6.04118e-5	1.16386e-5	0.00120998	3.43116e-4
chr10	91279895	91279993	11187756	0	+	0.255102	[0,0.29]	chr10	850434	17	UTR3	UTR3:EXON_MRNA	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.25155	3.50538	4.75921	0.00495706	2.77035e-4	0.0368301	0.00444204
chr21	37202343	37202439	18115587	0	+	0.572917	(0.53,0.59]	chr21	1536145	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	32	2	2.14205	3.50514	4.86823	0.0123179	4.35895e-4	0.070688	0.00623608
chr7	139045603	139045702	9102037	0	-	0.434343	(0.42,0.455]	chr7	694516	22	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	3.38704	3.505095	3.62315	4.234e-4	1.91222e-5	0.00613535	4.67807e-4
chr3	128620144	128620233	4441303	0	-	0.191011	[0,0.29]	chr3	368983	3	UTR3	UTR3:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.64823	3.50503	4.36183	0.0216669	0.00170062	0.103121	0.01759
chrX	63349383	63349481	19088577	0	-	0.285714	[0,0.29]	chrX	1624065	23	UTR3	UTR3:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	13	2	2.64823	3.50503	4.36183	0.0216669	0.00170062	0.103121	0.01759
chr1	114707751	114707851	1239483	0	-	0.48	(0.455,0.49]	chr1	121309	34	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	2.60247	3.50497	4.40747	8.0052e-4	4.62415e-9	0.00996169	3.9785e-7
chr1	159918700	159918799	1326674	0	-	0.494949	(0.49,0.53]	chr1	135579	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	88	2	3.4094	3.504955	3.60051	4.14236e-6	3.97949e-6	1.45416e-4	1.28529e-4
chr1	143904398	143904494	1261680	0	-	0.572917	(0.53,0.59]	chr1	123668	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	H2BP2:H3-2	ENSG00000234571.2:ENSG00000273213.4	ENST00000609585.1:ENST00000669710.1:ENST00000650532.1:ENST00000609879.2:ENST00000449108.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:transcribed_unprocessed_pseudogene	7	101	2	3.39895	3.5049200000000003	3.61089	4.62502e-6	4.22829e-6	1.60445e-4	1.34682e-4
chr1	153665277	153665336	1298439	0	-	0.40678	(0.39,0.42]	chr1	130400	2	CDS	CDS:EXON_MRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	3.23394	3.504885	3.77583	5.30858e-5	1.05659e-5	0.00108035	3.15727e-4
chr1	32173479	32173579	127043	0	+	0.4	(0.39,0.42]	chr1	15636	27	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	29	2	3.32811	3.5048250000000003	3.68154	0.00182819	3.05414e-4	0.0183913	0.00442973
chr12	56283791	56283816	13349967	0	-	0.4	(0.39,0.42]	chr12	1051034	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000547449.1:ENST00000547912.1:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.32811	3.5048250000000003	3.68154	0.00182819	3.05414e-4	0.0183913	0.00442973
chr7	103486342	103486416	8963100	0	-	0.418919	(0.39,0.42]	chr7	686065	3	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.32811	3.5048250000000003	3.68154	0.00182819	3.05414e-4	0.0183913	0.00442973
chr7	107905432	107905504	8457332	0	+	0.402778	(0.39,0.42]	chr7	646299	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000478414.1:ENST00000489184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	2.55985	3.5048	4.44975	0.00115425	2.67778e-6	0.0130851	9.19863e-5
chr10	87505104	87505194	11173429	0	+	0.733333	(0.59,1]	chr10	849103	2	CDS	CDS:EXON_MRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.03921	3.5046800000000005	4.97015	0.0371471	0.00140057	0.151849	0.0144327
chr18	39335405	39335494	17084566	0	-	0.573034	(0.53,0.59]	chr18	1403466	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	MIR924HG:RPL7AP66	ENSG00000267374.2:ENSG00000175886.10	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000664913.1:ENST00000591469.1:ENST00000654837.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000667701.1:ENST00000652839.1:ENST00000663244.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000666091.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000588490.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	43	2	2.23705	3.504635	4.77222	0.00245055	6.67251e-4	0.0221427	0.00867533
chr1	198639268	198639341	647285	0	+	0.410959	(0.39,0.42]	chr1	65052	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PTPRC	ENSG00000081237.20	ENST00000367379.6:ENST00000643513.1:ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000645247.1:ENST00000462363.6:ENST00000367367.8:ENST00000413409.6:ENST00000367364.5:ENST00000529828.5:ENST00000418674.1:ENST00000427110.6:ENST00000391970.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:processed_transcript	1	16	2	2.88836	3.50448	4.1206	0.0102432	0.00597537	0.062872	0.0428562
chr10	23868006	23868106	10967570	0	+	0.42	(0.39,0.42]	chr10	834620	1724	INTRON	INTRON	KIAA1217	ENSG00000120549.18	ENST00000376462.5:ENST00000481700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.88836	3.50448	4.1206	0.0102432	0.00597537	0.062872	0.0428562
chr13	95021477	95021574	14109369	0	-	0.350515	(0.33,0.36]	chr13	1104292	18	UTR3	UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	3.34893	3.5044250000000003	3.65992	3.45596e-4	2.22813e-4	0.00486237	0.00370775
chr11	118503879	118503978	12158954	0	+	0.444444	(0.42,0.455]	chr11	937104	16	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr14	77555445	77555519	14717800	0	-	0.432432	(0.42,0.455]	chr14	1153387	3	CDS	CDS:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7:ENST00000554901.1:ENST00000554365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr16	46671782	46671860	15927238	0	-	0.423077	(0.42,0.455]	chr16	1277427	2	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr17	76733686	76733769	16359320	0	+	0.433735	(0.42,0.455]	chr17	1328611	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	METTL23:RP11-318A15.7	ENSG00000181038.14:ENSG00000267168.1	ENST00000615984.4:ENST00000341249.11:ENST00000588783.5:ENST00000586738.5:ENST00000588302.5:ENST00000586752.5:ENST00000590964.5:ENST00000588822.1:ENST00000587459.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr4	13337367	13337450	4721281	0	+	0.445783	(0.42,0.455]	chr4	391940	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr4	78923856	78923947	5482258	0	-	0.428571	(0.42,0.455]	chr4	439461	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAQR3	ENSG00000163291.14	ENST00000342820.10:ENST00000512760.5:ENST00000511594.5:ENST00000512733.5:ENST00000515541.1:ENST00000503343.5:ENST00000395594.2:ENST00000515853.5:ENST00000505715.1:ENST00000512299.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr5	65809514	65809607	6003915	0	+	0.44086	(0.42,0.455]	chr5	470334	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000506799.5:ENST00000511299.5:ENST00000509935.2:ENST00000507201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr8	94519377	94519476	9960297	0	-	0.444444	(0.42,0.455]	chr8	751305	5	CDS	CDS:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.36247	3.504355	4.64624	0.0462889	8.75333e-4	0.176878	0.0101169
chr11	18407278	18407376	11831565	0	+	0.377551	(0.36,0.39]	chr11	906045	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	106	962	2	3.3252100000000002	3.5042400000000002	3.68327	4.67852e-11	1.89671e-12	7.6048e-9	3.99352e-10
chr10	28595867	28595954	10990382	0	+	0.482759	(0.455,0.49]	chr10	835874	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	3.09445	3.50423	3.91401	6.1765e-4	3.58445e-7	0.00822794	1.659e-5
chr1	149886974	149887074	464895	0	+	0.68	(0.59,1]	chr1	46814	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC20	ENSG00000184260.6	ENST00000331380.4	protein_coding	protein_coding	protein_coding	protein_coding	17	482	2	2.84052	3.50399	4.16746	5.18765e-5	1.86565e-9	0.00105915	1.96611e-7
chr22	29278029	29278122	18336502	0	+	0.548387	(0.53,0.59]	chr22	1558167	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000444626.5:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.86102	3.503735	4.14645	0.0017805	2.32261e-5	0.0172974	6.06413e-4
chr5	119170189	119170288	6175643	0	+	0.323232	(0.29,0.33]	chr5	481713	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000504497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.36742	3.50358	4.63974	0.0147368	4.81181e-4	0.0801529	0.00677016
chr7	12234673	12234773	8134868	0	+	0.32	(0.29,0.33]	chr7	621602	28	UTR3	UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000396668.8:ENST00000396667.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.36742	3.50358	4.63974	0.0147368	4.81181e-4	0.0801529	0.00677016
chr16	30117669	30117733	15913070	0	-	0.546875	(0.53,0.59]	chr16	1275018	1	CDS_START	CDS_START:CDS:EXON_MRNA	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000395200.5:ENST00000395202.5:ENST00000478356.5:ENST00000395199.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	3.39416	3.5035499999999997	3.61294	0.0310038	0.00126006	0.130016	0.013837
chr1	23310895	23310980	894712	0	-	0.4	(0.39,0.42]	chr1	92820	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	94	2	3.30864	3.50347	3.6983	2.16638e-6	1.07894e-6	8.44845e-5	4.27123e-5
chr6	31837337	31837435	7116788	0	+	0.510204	(0.49,0.53]	chr6	546228	3	EXON_LNCRNA	EXON_LNCRNA	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	29	351	2	3.30995	3.50334	3.69673	5.07995e-8	1.22821e-10	3.4372e-6	1.62866e-8
chr10	87505373	87505462	11173432	0	+	0.640449	(0.59,1]	chr10	849103	5	CDS	CDS:EXON_MRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.53147	3.5033200000000004	4.47517	0.00807544	0.00735659	0.0531324	0.0491503
chr8	22140171	22140248	9750702	0	-	0.441558	(0.42,0.455]	chr8	737178	1	CDS	CDS:EXON_MRNA	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2:ENST00000518664.5:ENST00000519074.5:ENST00000519875.1:ENST00000521744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.20599	3.5033149999999997	4.80064	0.0227797	3.0479e-4	0.105293	0.00472028
chr2	65312812	65312911	2708760	0	-	0.383838	(0.36,0.39]	chr2	241397	21	UTR3	UTR3:EXON_MRNA	SPRED2	ENSG00000198369.10	ENST00000356388.9	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.61529	3.50317	5.39105	0.0466766	7.73826e-6	0.171348	2.43421e-4
chr3	141925889	141925983	3790195	0	+	0.5	(0.49,0.53]	chr3	323508	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000484727.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	3.03834	3.502955	3.96757	6.21316e-5	5.44724e-5	0.00134149	0.00110632
chr1	7780538	7780637	29765	0	+	0.434343	(0.42,0.455]	chr1	3443	10	UTR3	UTR3:EXON_MRNA	VAMP3	ENSG00000049245.13	ENST00000054666.11	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.3259	3.502855	4.67981	0.0484606	5.38444e-4	0.175495	0.00744072
chr10	79315535	79315634	11148604	0	+	0.454545	(0.42,0.455]	chr10	847412	14	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.3259	3.502855	4.67981	0.0484606	5.38444e-4	0.175495	0.00744072
chr3	12898997	12899095	4042310	0	-	0.438776	(0.42,0.455]	chr3	339374	21	UTR3	UTR3:EXON_MRNA	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.3259	3.502855	4.67981	0.0484606	5.38444e-4	0.175495	0.00744072
chr8	43130389	43130488	9308578	0	+	0.434343	(0.42,0.455]	chr8	712880	77	UTR3	UTR3:EXON_MRNA	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.3259	3.502855	4.67981	0.0484606	5.38444e-4	0.175495	0.00744072
chr3	120330300	120330400	4404420	0	-	0.33	(0.29,0.33]	chr3	365211	59	UTR3	UTR3:EXON_MRNA	LRRC58	ENSG00000163428.4	ENST00000295628.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.63813	3.50279	4.36745	0.00803229	4.53307e-6	0.0528968	1.42727e-4
chr20	50582812	50582909	17816210	0	+	0.56701	(0.53,0.59]	chr20	1507152	2	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.39416	3.502745	3.61133	0.00126006	4.55298e-4	0.013837	0.00608573
chr20	34075956	34076040	17762618	0	+	0.547619	(0.53,0.59]	chr20	1500129	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	3.39416	3.5025899999999996	3.61102	0.00126006	3.01487e-5	0.013837	6.78876e-4
chr19	43768962	43769032	17580564	0	-	0.585714	(0.53,0.59]	chr19	1479096	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000600909.1:ENST00000648053.1:ENST00000598836.1:ENST00000597184.5:ENST00000599720.5:ENST00000601549.2:ENST00000600408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	77	2	3.06793	3.502205	3.93648	8.06385e-5	1.78012e-5	0.00167444	4.43767e-4
chr3	150544414	150544498	4517221	0	-	0.357143	(0.33,0.36]	chr3	374943	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1	protein_coding	protein_coding	protein_coding	protein_coding	13	118	2	3.44042	3.502205	3.56399	1.72782e-6	3.56679e-8	6.99817e-5	2.3087e-6
chr5	171407718	171407745	6384398	0	+	0.333333	(0.33,0.36]	chr5	495838	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	3.32157	3.50216	3.68275	1.77615e-4	2.69528e-5	0.00287736	6.88144e-4
chr19	8404239	8404336	17220132	0	+	0.360825	(0.36,0.39]	chr19	1417577	8	UTR3	UTR3:EXON_MRNA	RAB11B	ENSG00000185236.12	ENST00000328024.11	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.30591	3.50213	3.69835	3.2708e-4	1.89047e-4	0.00502339	0.003022
chr3	122425788	122425887	4411552	0	-	0.373737	(0.36,0.39]	chr3	366116	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	3.02397	3.50211	3.98025	0.00881716	0.00674398	0.0562439	0.0461258
chr11	314170	314270	11756465	0	+	0.61	(0.59,1]	chr11	897764	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000680299.1:ENST00000679353.1:ENST00000679982.1:ENST00000681350.1:ENST00000680855.1:ENST00000680310.1:ENST00000681702.1:ENST00000681111.1:ENST00000680342.1:ENST00000680870.1:ENST00000681293.1:ENST00000680802.1:ENST00000528780.5:ENST00000328221.5:ENST00000681761.1:ENST00000681821.1:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	533	2	3.36749	3.5019299999999998	3.63637	3.97742e-7	5.06493e-8	2.03871e-5	3.11927e-6
chr14	21368354	21368441	14521320	0	-	0.448276	(0.42,0.455]	chr14	1137391	2	CDS	CDS:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.91373	3.5017650000000002	4.0898	0.00892357	0.00698074	0.0567495	0.0473262
chr19	2073099	2073197	17421621	0	-	0.438776	(0.42,0.455]	chr19	1453173	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8:ENST00000592143.2:ENST00000592280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.91373	3.5017650000000002	4.0898	0.00892357	0.00698074	0.0567495	0.0473262
chr7	139423270	139423363	8566317	0	+	0.430108	(0.42,0.455]	chr7	653683	11	UTR3	UTR3:EXON_MRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000263545.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.91373	3.5017650000000002	4.0898	0.00892357	0.00698074	0.0567495	0.0473262
chr11	66244060	66244158	11989345	0	+	0.602041	(0.59,1]	chr11	921512	9	UTR3	UTR3:EXON_MRNA	PACS1	ENSG00000175115.13	ENST00000320580.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.76802	3.5016599999999998	4.2353	0.0165254	0.0158525	0.0873033	0.0854671
chr9	135503934	135504033	10510112	0	+	0.626263	(0.59,1]	chr9	795602	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS2	ENSG00000122140.11	ENST00000371785.5:ENST00000241600.10:ENST00000488610.5:ENST00000485333.5:ENST00000472852.1:ENST00000453385.1:ENST00000472946.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.76802	3.5016599999999998	4.2353	0.0165254	0.0158525	0.0873033	0.0854671
chr14	94102476	94102568	14468055	0	+	0.597826	(0.59,1]	chr14	1129898	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	IFI27L1	ENSG00000165948.11	ENST00000553350.5:ENST00000555523.6:ENST00000393115.7:ENST00000556381.5:ENST00000554166.5:ENST00000553664.1:ENST00000555341.5:ENST00000557218.5:ENST00000554544.5:ENST00000557066.5:ENST00000554562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.28778	3.5014399999999997	4.7151	0.0556537	0.00412279	0.191528	0.0325842
chr10	73014223	73014289	11568303	0	-	0.409091	(0.39,0.42]	chr10	880451	1	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3:ENST00000464310.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	155	2	3.12234	3.501335	3.88033	1.28898e-4	5.18623e-10	0.0024153	5.867e-8
chr17	21001852	21001950	16477804	0	-	0.44898	(0.42,0.455]	chr17	1346694	24	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.7523	3.50129	4.25028	0.0153283	0.00406761	0.0828908	0.032143
chr2	65312224	65312322	2708754	0	-	0.438776	(0.42,0.455]	chr2	241397	15	UTR3	UTR3:EXON_MRNA	SPRED2	ENSG00000198369.10	ENST00000356388.9	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.7523	3.50129	4.25028	0.0153283	0.00406761	0.0828908	0.032143
chr4	75661930	75662025	5473057	0	-	0.452632	(0.42,0.455]	chr4	438427	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000677733.1:ENST00000502654.5:ENST00000509100.6:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.7523	3.50129	4.25028	0.0153283	0.00406761	0.0828908	0.032143
chr5	132642821	132642912	6225648	0	+	0.384615	(0.36,0.39]	chr5	484564	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AC116366.7:RAD50	ENSG00000283782.2:ENSG00000113522.14	ENST00000638452.2:ENST00000638568.2:ENST00000639899.1:ENST00000638504.1:ENST00000640655.2:ENST00000378823.8:ENST00000651249.1:ENST00000455677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.84089	3.50116	4.16143	0.0128123	0.00486719	0.0719798	0.0366328
chr8	81684070	81684169	9915763	0	-	0.363636	(0.36,0.39]	chr8	748940	21	INTRON	INTRON	IMPA1	ENSG00000133731.10	ENST00000256108.10:ENST00000311489.8:ENST00000449740.6:ENST00000523942.5:ENST00000518188.5:ENST00000523710.5:ENST00000519964.5:ENST00000521360.5:ENST00000521979.5:ENST00000522997.5:ENST00000518202.5:ENST00000519816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.84089	3.50116	4.16143	0.0128123	0.00486719	0.0719798	0.0366328
chr9	33921782	33921872	10633419	0	-	0.366667	(0.36,0.39]	chr9	803789	2	UTR3	UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.84089	3.50116	4.16143	0.0128123	0.00486719	0.0719798	0.0366328
chr11	32932041	32932141	11899047	0	+	0.5	(0.49,0.53]	chr11	909001	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	65	2	3.14975	3.5010950000000003	3.85244	8.97896e-5	5.52735e-6	0.0016645	1.83781e-4
chr12	111681735	111681835	13541757	0	-	0.45	(0.42,0.455]	chr12	1065455	2	CDS	CDS:EXON_MRNA	BRAP	ENSG00000089234.16	ENST00000419234.9:ENST00000327551.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.94263	3.501085	4.05954	0.00766873	0.00617886	0.0503696	0.0439741
chr3	113724026	113724095	4360349	0	-	0.42029	(0.42,0.455]	chr3	363925	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NAA50	ENSG00000121579.13	ENST00000240922.8:ENST00000616174.1:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000493454.5:ENST00000481432.5:ENST00000493900.5:ENST00000630058.1:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.94263	3.501085	4.05954	0.00766873	0.00617886	0.0503696	0.0439741
chr1	220067301	220067393	1511589	0	-	0.358696	(0.33,0.36]	chr1	151165	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BPNT1	ENSG00000162813.18	ENST00000544404.5:ENST00000414869.6:ENST00000322067.12:ENST00000469520.6:ENST00000354807.7:ENST00000482136.5:ENST00000463953.5:ENST00000498791.6:ENST00000480959.6:ENST00000548668.1:ENST00000498237.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.97606	3.5010450000000004	4.02603	0.00871774	0.0071776	0.0558165	0.048188
chr2	108775799	108775867	1983070	0	+	0.352941	(0.33,0.36]	chr2	188332	2	CDS	CDS:EXON_MRNA	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.97606	3.5010450000000004	4.02603	0.00871774	0.0071776	0.0558165	0.048188
chr4	37861706	37861801	4793394	0	+	0.336842	(0.33,0.36]	chr4	395322	2	UTR3	UTR3:EXON_MRNA	PGM2	ENSG00000169299.14	ENST00000381967.9:ENST00000512556.1:ENST00000510084.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.97606	3.5010450000000004	4.02603	0.00871774	0.0071776	0.0558165	0.048188
chr15	90473895	90473967	15100501	0	+	0.555556	(0.53,0.59]	chr15	1188131	1	CDS	CDS:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000558003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	3.38347	3.5010149999999998	3.61856	0.0303021	0.00132446	0.129773	0.0138834
chr16	33980584	33980652	15640341	0	+	0.573529	(0.53,0.59]	chr16	1242729	2	EXON_PSEUDO	EXON_PSEUDO	RP11-598D12.4	ENSG00000198555.7	ENST00000568600.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	23	2	3.38347	3.5010149999999998	3.61856	0.0303021	0.00132446	0.129773	0.0138834
chr4	2926013	2926112	4687457	0	+	0.585859	(0.53,0.59]	chr4	388853	1	CDS	CDS:UTR3:EXON_MRNA	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000398123.6:ENST00000514940.5:ENST00000541051.5:ENST00000513762.2:ENST00000536424.2:ENST00000539149.1:ENST00000541843.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	3.38347	3.5010149999999998	3.61856	0.0303021	0.00132446	0.129773	0.0138834
chr8	81522048	81522140	9915117	0	-	0.402174	(0.39,0.42]	chr8	748801	5	EXON_PSEUDO	EXON_PSEUDO	FTH1P11	ENSG00000237264.4	ENST00000517577.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	89	2	2.98752	3.500975	4.01443	2.91053e-4	2.42399e-8	0.00462551	1.66474e-6
chr6	52277132	52277198	7736724	0	-	0.575758	(0.53,0.59]	chr6	593731	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.54844	3.50089	4.45334	0.00663226	3.13332e-6	0.0461575	1.15746e-4
chr14	20456763	20456860	14171277	0	+	0.546392	(0.53,0.59]	chr14	1109110	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555306.5:ENST00000557344.5:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1:ENST00000556054.5:ENST00000557592.5:ENST00000557365.1:ENST00000557150.5:ENST00000438886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	39	2	3.02054	3.500845	3.98115	0.00577011	6.28226e-5	0.0426551	0.00124286
chr6	16147948	16148048	7067258	0	+	0.34	(0.33,0.36]	chr6	540868	13	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	3.39492	3.50059	3.60626	4.50537e-5	1.86991e-5	0.0010411	4.59195e-4
chr5	140706221	140706314	6255965	0	+	0.473118	(0.455,0.49]	chr5	487973	6	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.12843	3.50038	3.87233	0.00392855	1.08465e-4	0.0322851	0.00193256
chr12	6870048	6870136	12714947	0	+	0.556818	(0.53,0.59]	chr12	987150	1	CDS	CDS:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000488464.6:ENST00000535434.5:ENST00000493987.5:ENST00000482209.1:ENST00000474253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	167	2	2.892	3.5001800000000003	4.10836	5.66042e-6	1.42256e-8	1.71843e-4	1.15035e-6
chr2	96291825	96291900	2790455	0	-	0.573333	(0.53,0.59]	chr2	248791	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.88327	3.50017	5.11707	0.0298124	1.35965e-4	0.129773	0.00231202
chr7	116500259	116500351	8475329	0	+	0.532609	(0.53,0.59]	chr7	647288	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CAV2	ENSG00000105971.15	ENST00000484871.5:ENST00000485561.5:ENST00000472470.5:ENST00000467035.5:ENST00000477018.5:ENST00000498493.5:ENST00000462876.5:ENST00000478226.5:ENST00000222693.5:ENST00000343213.2:ENST00000393480.3:ENST00000495841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.88327	3.50017	5.11707	0.0298124	1.35965e-4	0.129773	0.00231202
chr12	56272288	56272387	13349840	0	-	0.525253	(0.49,0.53]	chr12	1051002	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	84	2	3.234	3.5001249999999997	3.76625	1.0134e-5	4.96653e-6	3.04784e-4	1.54322e-4
chr10	74119067	74119167	11117658	0	+	0.35	(0.33,0.36]	chr10	846311	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	3.48968	3.500025	3.51037	5.65559e-5	1.46345e-5	0.00114087	4.12451e-4
chr15	43746539	43746639	14896285	0	+	0.71	(0.59,1]	chr15	1171240	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PDIA3	ENSG00000167004.13	ENST00000469684.1:ENST00000300289.10:ENST00000434494.5:ENST00000446523.5:ENST00000455250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	104	2	3.48719	3.49998	3.51277	1.28347e-4	1.00384e-4	0.00241206	0.00180872
chr3	172091880	172091980	3887826	0	+	0.47	(0.455,0.49]	chr3	328998	446	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.83792	3.49998	4.16204	0.0110512	1.83061e-5	0.0665375	4.99708e-4
chr14	102034046	102034117	14495716	0	+	0.507042	(0.49,0.53]	chr14	1133198	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	3.23855	3.49977	3.76099	2.00194e-4	5.12488e-5	0.0034021	0.00104999
chr1	160294767	160294857	1328725	0	-	0.555556	(0.53,0.59]	chr1	135999	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000545284.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	2.27113	3.499675	4.72822	0.0178853	4.40858e-7	0.0918323	1.99026e-5
chr19	811951	812045	17189594	0	+	0.468085	(0.455,0.49]	chr19	1411055	13	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	112	2	3.12251	3.4996549999999997	3.8768	4.80724e-6	8.52884e-8	1.65121e-4	4.87637e-6
chr16	69699523	69699622	15725354	0	+	0.323232	(0.29,0.33]	chr16	1252140	33	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	3.13212	3.499315	3.86651	0.0112245	0.00551048	0.0665375	0.0414592
chr2	75937870	75937970	1896485	0	+	0.31	(0.29,0.33]	chr2	179812	650	INTRON	INTRON	RP11-335E8.3	ENSG00000287474.1	ENST00000670606.1	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	3.13212	3.499315	3.86651	0.0112245	0.00551048	0.0665375	0.0414592
chr20	47257306	47257406	17993592	0	-	0.32	(0.29,0.33]	chr20	1524990	75	INTRON	INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.13212	3.499315	3.86651	0.0112245	0.00551048	0.0665375	0.0414592
chr7	32508770	32508870	8209628	0	+	0.31	(0.29,0.33]	chr7	626410	126	INTRON	INTRON	AVL9	ENSG00000105778.19	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5:ENST00000640103.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	3.13212	3.499315	3.86651	0.0112245	0.00551048	0.0665375	0.0414592
chr6	31861362	31861450	7662798	0	-	0.545455	(0.53,0.59]	chr6	585398	3	CDS	CDS:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	57	2	3.02054	3.499225	3.97791	0.00577011	2.51849e-6	0.0426551	8.73415e-5
chr3	150458636	150458735	3807489	0	+	0.383838	(0.36,0.39]	chr3	324963	1	UTR3	UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1:ENST00000460316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	1.89872	3.49906	5.0994	0.056542	4.68763e-5	0.19417	0.00107286
chr8	8172269	8172368	9686526	0	-	0.636364	(0.59,1]	chr8	734076	38	INTRON	INTRON	FAM85B	ENSG00000253893.2	ENST00000519726.2	lncRNA	lncRNA	lncRNA	lncRNA	6	173	2	2.08167	3.498965	4.91626	0.00939499	1.24784e-8	0.0590912	9.37445e-7
chr7	97855352	97855405	8940643	0	-	0.396226	(0.39,0.42]	chr7	682247	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	7	73	2	3.23648	3.498945	3.76141	2.14058e-4	1.94634e-6	0.00359478	6.99902e-5
chr1	156135186	156135249	486124	0	+	0.634921	(0.59,1]	chr1	51282	1	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000515824.1:ENST00000368298.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	107	2	2.75512	3.4988799999999998	4.24264	4.62727e-4	3.77126e-5	0.00613432	9.05627e-4
chr19	3984278	3984350	17430267	0	-	0.527778	(0.49,0.53]	chr19	1454737	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600720.1:ENST00000594885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	51	582	2	3.47625	3.4987500000000002	3.52125	5.27274e-10	1.18597e-10	6.52835e-8	1.57865e-8
chr1	6186185	6186282	842296	0	-	0.371134	(0.36,0.39]	chr1	84886	13	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	2.92197	3.49869	4.07541	1.60658e-4	8.66332e-8	0.00287058	4.94425e-6
chr3	156554956	156554989	4538795	0	-	0.545455	(0.53,0.59]	chr3	376115	1	CDS	CDS:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.43852	3.4985600000000003	4.5586	0.00373745	0.00161229	0.0303359	0.0169168
chr22	19964226	19964292	18296476	0	+	0.590909	(0.59,1]	chr22	1553007	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	COMT:MIR4761	ENSG00000093010.15:ENSG00000284031.1	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5:ENST00000677397.1:ENST00000678240.1:ENST00000677675.1:ENST00000585066.1:ENST00000493893.1:ENST00000678945.1:ENST00000677564.1:ENST00000677470.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	10	254	2	2.9501	3.498435	4.04677	9.06824e-5	5.68432e-8	0.00182992	3.43245e-6
chr1	180155089	180155172	582481	0	+	0.674699	(0.59,1]	chr1	60515	2	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000392029.6:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.42639	3.49838	4.57037	0.0409084	0.0054994	0.163285	0.0402071
chr10	74150754	74150842	11576117	0	-	0.647727	(0.59,1]	chr10	881723	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1:ENST00000487653.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.42639	3.49838	4.57037	0.0409084	0.0054994	0.163285	0.0402071
chr20	43702820	43702903	17794386	0	+	0.590361	(0.59,1]	chr20	1504227	5	CDS	CDS:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.42639	3.49838	4.57037	0.0409084	0.0054994	0.163285	0.0402071
chrX	48893634	48893728	19063441	0	-	0.638298	(0.59,1]	chrX	1620512	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIMM17B	ENSG00000126768.12	ENST00000376582.7:ENST00000465150.6:ENST00000396779.7:ENST00000466995.5:ENST00000495490.6:ENST00000472645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.42639	3.49838	4.57037	0.0409084	0.0054994	0.163285	0.0402071
chr22	20889624	20889723	18299837	0	+	0.444444	(0.42,0.455]	chr22	1553630	19	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.37329	3.49822	3.62315	0.00136107	4.234e-4	0.0141115	0.00613535
chr7	101216694	101216786	8953756	0	-	0.576087	(0.53,0.59]	chr7	684721	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000478082.5:ENST00000489927.1:ENST00000414785.5:ENST00000456079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	2.96156	3.4980450000000003	4.03453	9.05921e-5	4.6e-5	0.00182947	9.56296e-4
chr9	34917828	34917922	10241920	0	+	0.489362	(0.455,0.49]	chr9	770214	8	EXON_PSEUDO	EXON_PSEUDO	GLULP4	ENSG00000178723.7	ENST00000324731.7	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	44	2	2.52734	3.49796	4.46858	0.00792433	2.38087e-6	0.0523592	8.3081e-5
chr5	131205230	131205329	6220270	0	+	0.30303	(0.29,0.33]	chr5	484034	58	UTR3	UTR3:EXON_MRNA	LYRM7	ENSG00000186687.16	ENST00000379380.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.92065	3.497675	4.0747	0.0117842	0.00577533	0.0686664	0.0417823
chr18	3457840	3457940	16730875	0	+	0.49	(0.455,0.49]	chr18	1380205	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TGIF1	ENSG00000177426.22	ENST00000401449.5:ENST00000548489.6:ENST00000618001.4:ENST00000405385.7:ENST00000407501.6:ENST00000343820.10:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.23479	3.497635	4.76048	0.0209335	3.99985e-4	0.101282	0.00588767
chr5	179836575	179836657	6415302	0	+	0.548781	(0.53,0.59]	chr5	499338	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	3.44509	3.497635	3.55018	8.31409e-5	6.52276e-6	0.00171126	1.94038e-4
chr5	44809229	44809312	5961513	0	+	0.566265	(0.53,0.59]	chr5	467190	3	CDS	CDS:EXON_MRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	3.06939	3.49756	3.92573	6.54756e-4	8.62301e-5	0.00860229	0.00160749
chr6	36487075	36487175	7134462	0	+	0.48	(0.455,0.49]	chr6	549567	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000474988.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.35515	3.497465	4.63978	0.0140117	6.94032e-4	0.0767536	0.00876781
chrX	53568691	53568782	19077559	0	-	0.483516	(0.455,0.49]	chrX	1622807	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.35515	3.497465	4.63978	0.0140117	6.94032e-4	0.0767536	0.00876781
chr7	100633228	100633284	8952303	0	-	0.660714	(0.59,1]	chr7	684207	1	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000476304.5:ENST00000473374.5:ENST00000473571.1:ENST00000475011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	141	2	2.97653	3.4973650000000003	4.0182	0.00142722	8.03098e-7	0.0153442	3.319e-5
chr4	134952258	134952348	5654994	0	-	0.477778	(0.455,0.49]	chr4	449896	1	EXON_PSEUDO	EXON_PSEUDO	RP11-192C21.1	ENSG00000241411.1	ENST00000459634.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	59	2	2.40916	3.49726	4.58536	0.00105201	9.22269e-7	0.0116806	4.12764e-5
chr1	40271893	40271964	153014	0	+	0.394366	(0.39,0.42]	chr1	19163	1	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	3.3298	3.497235	3.66467	0.00165391	3.60066e-4	0.0163614	0.00544157
chr21	43774201	43774301	18273572	0	-	0.46	(0.455,0.49]	chr21	1549768	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSTB	ENSG00000160213.9	ENST00000639959.1:ENST00000640406.1:ENST00000480147.3:ENST00000675996.1:ENST00000291568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	109	2	3.19847	3.497055	3.79564	1.88969e-5	4.46862e-8	5.12059e-4	2.79495e-6
chr1	196677571	196677667	640854	0	+	0.395833	(0.39,0.42]	chr1	64443	2	CDS	CDS:EXON_MRNA:INTRON	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.18155	3.496995	4.81244	0.0283931	1.71008e-7	0.127654	8.87341e-6
chr8	47976685	47976778	9316300	0	+	0.483871	(0.455,0.49]	chr8	713599	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000521151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	3.32637	3.49688	3.66739	1.64563e-4	2.02214e-5	0.00269001	5.39633e-4
chr22	32498530	32498629	18354457	0	+	0.353535	(0.33,0.36]	chr22	1560441	1	UTR3	UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	3.38729	3.496775	3.60626	1.20567e-4	4.50537e-5	0.00210079	0.0010411
chr1	19227381	19227450	877219	0	-	0.550725	(0.53,0.59]	chr1	90447	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000494770.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	64	2	3.18707	3.4965849999999996	3.8061	3.55681e-4	8.37944e-6	0.00539248	2.38248e-4
chr1	27894011	27894106	910794	0	-	0.410526	(0.39,0.42]	chr1	95233	1	CDS	CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000419958.5:ENST00000373909.7:ENST00000313433.11	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.23174	3.496575	3.76141	2.82122e-4	2.14058e-4	0.00415762	0.00359478
chr10	44414900	44414984	11463004	0	-	0.428571	(0.42,0.455]	chr10	874134	4	EXON_PSEUDO	EXON_PSEUDO	RPL9P21	ENSG00000214089.3	ENST00000392269.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	31	2	2.75179	3.4965599999999997	4.24133	0.00326918	8.66526e-4	0.0282494	0.0100799
chr16	67638244	67638338	15711451	0	+	0.382979	(0.36,0.39]	chr16	1250436	5	UTR3	UTR3:EXON_MRNA	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1:ENST00000645699.1:ENST00000645409.1:ENST00000646566.1:ENST00000644950.1:ENST00000642420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	3.29474	3.4965450000000002	3.69835	0.00194306	3.2708e-4	0.0185233	0.00502339
chr10	43387884	43387936	11461772	0	-	0.538462	(0.53,0.59]	chr10	873957	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.56002	3.496405	4.43279	0.00634904	0.0026472	0.0446708	0.0231864
chr14	102619815	102619915	14498950	0	+	0.3	(0.29,0.33]	chr14	1133580	261	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	3.08169	3.496405	3.91112	0.00114594	3.6899e-6	0.0130468	1.20177e-4
chr19	44974517	44974597	17350136	0	+	0.55	(0.53,0.59]	chr19	1439348	2	CDS	CDS:EXON_MRNA:INTRON	CLPTM1	ENSG00000104853.16	ENST00000588855.5:ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000591304.1:ENST00000587537.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.0404	3.496365	4.95233	0.0362529	3.02711e-4	0.148525	0.00439897
chr6	116278516	116278616	7908898	0	-	0.58	(0.53,0.59]	chr6	605658	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.0404	3.496365	4.95233	0.0362529	3.02711e-4	0.148525	0.00439897
chr11	119027015	119027095	12626357	0	-	0.6	(0.59,1]	chr11	979717	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000526275.5:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	80	2	3.4558	3.49614	3.53648	0.00107706	1.35447e-4	0.0124943	0.00231202
chr3	13317680	13317780	4046198	0	-	0.61	(0.59,1]	chr3	339511	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	7	175	2	3.28438	3.4960750000000003	3.70777	8.33662e-5	1.69538e-6	0.00171506	6.22555e-5
chr5	133955605	133955701	6843124	0	-	0.5	(0.49,0.53]	chr5	523541	2	UTR3	UTR3:EXON_MRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.8671	3.4960000000000004	4.1249	0.0100489	2.4461e-5	0.0623334	5.72214e-4
chr6	36923835	36923934	7135748	0	+	0.484848	(0.455,0.49]	chr6	549805	5	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.35214	3.49596	4.63978	0.0455621	6.94032e-4	0.168044	0.00876781
chr1	729608	729706	824341	0	-	0.571429	(0.53,0.59]	chr1	81527	39	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-206L10.17:RP11-206L10.2	ENSG00000230021.10:ENSG00000228327.3	ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000414688.6:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr1	154589899	154589928	1303627	0	-	0.586207	(0.53,0.59]	chr1	131394	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr1	160344773	160344826	496657	0	+	0.566038	(0.53,0.59]	chr1	53440	2	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000437169.5:ENST00000294785.10:ENST00000421914.5:ENST00000465223.1:ENST00000438008.5:ENST00000467837.5:ENST00000491332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr1	171781813	171781890	538050	0	+	0.532468	(0.53,0.59]	chr1	57795	3	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1AKNMT	ENSG00000010165.20	ENST00000361735.4:ENST00000485629.1:ENST00000362019.7:ENST00000367737.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr1	211749006	211749105	1479010	0	-	0.555556	(0.53,0.59]	chr1	149271	57	UTR3	UTR3:EXON_MRNA	LPGAT1	ENSG00000123684.13	ENST00000366997.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr1	222628932	222629030	723954	0	+	0.540816	(0.53,0.59]	chr1	72962	15	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr10	102369282	102369382	11228049	0	+	0.57	(0.53,0.59]	chr10	855109	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GBF1	ENSG00000107862.6	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000369983.4:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678585.1:ENST00000678453.1:ENST00000677607.1:ENST00000677098.1:ENST00000678722.1:ENST00000676735.1:ENST00000676482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr11	497570	497670	12226399	0	-	0.57	(0.53,0.59]	chr11	943340	2	SS5_PROX	SS5_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr11	34127530	34127599	11905759	0	+	0.550725	(0.53,0.59]	chr11	909663	2	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr11	47176574	47176634	12385470	0	-	0.583333	(0.53,0.59]	chr11	956493	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000532438.5:ENST00000529455.5:ENST00000525398.5:ENST00000531750.5:ENST00000525314.5:ENST00000629231.2:ENST00000527097.5:ENST00000528444.5:ENST00000524727.5:ENST00000529599.5:ENST00000528041.5:ENST00000529439.5:ENST00000530596.5:ENST00000533939.5:ENST00000526185.5:ENST00000528708.5:ENST00000524586.1:ENST00000530794.1:ENST00000528072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr11	65917558	65917650	12423492	0	-	0.576087	(0.53,0.59]	chr11	964304	1	CDS	CDS:EXON_MRNA	C11orf68	ENSG00000175573.7	ENST00000438576.3:ENST00000449692.3:ENST00000530188.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr11	70206373	70206473	12005517	0	+	0.59	(0.53,0.59]	chr11	924571	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FADD	ENSG00000168040.5	ENST00000301838.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr12	48134777	48134829	12861121	0	+	0.576923	(0.53,0.59]	chr12	998523	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PFKM	ENSG00000152556.17	ENST00000550345.6:ENST00000550924.6:ENST00000549941.7:ENST00000340802.12:ENST00000547581.5:ENST00000642730.1:ENST00000551339.6:ENST00000546964.5:ENST00000552989.5:ENST00000359794.11:ENST00000548345.5:ENST00000551804.5:ENST00000312352.11:ENST00000547587.5:ENST00000546465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr12	49034221	49034299	13323321	0	-	0.551282	(0.53,0.59]	chr12	1045461	3	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr12	56346532	56346624	13350592	0	-	0.532609	(0.53,0.59]	chr12	1051238	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6:ENST00000652398.1:ENST00000651967.1:ENST00000651339.1:ENST00000557235.5:ENST00000555488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr12	120782654	120782710	13581917	0	-	0.535714	(0.53,0.59]	chr12	1069239	1	CDS	CDS:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr15	50126845	50126945	15273136	0	-	0.59	(0.53,0.59]	chr15	1204831	75	INTRON	INTRON	ATP8B4	ENSG00000104043.15	ENST00000558829.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr15	74627969	74628052	15029158	0	+	0.578313	(0.53,0.59]	chr15	1181319	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CLK3	ENSG00000179335.20	ENST00000345005.8:ENST00000483723.5:ENST00000454830.6:ENST00000395066.9:ENST00000569406.5:ENST00000562078.5:ENST00000563842.5:ENST00000564468.5:ENST00000566926.1:ENST00000567805.5:ENST00000561673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr16	1507816	1507916	15487130	0	+	0.57	(0.53,0.59]	chr16	1225957	1	SS5_PROX	SS5_PROX:INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr16	14667634	14667727	15560196	0	+	0.537634	(0.53,0.59]	chr16	1231779	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BFAR	ENSG00000103429.11	ENST00000563971.5:ENST00000261658.7:ENST00000566710.1:ENST00000562545.5:ENST00000565478.1:ENST00000563082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr16	19652032	19652090	15578117	0	+	0.568965	(0.53,0.59]	chr16	1234320	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VPS35L	ENSG00000103544.15	ENST00000251143.9:ENST00000438132.7:ENST00000542263.5:ENST00000417362.7:ENST00000543152.5:ENST00000448695.5:ENST00000544275.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr16	67453543	67453614	15988689	0	-	0.535211	(0.53,0.59]	chr16	1283114	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATP6V0D1	ENSG00000159720.12	ENST00000290949.8:ENST00000602876.5:ENST00000565835.5:ENST00000426604.7:ENST00000540149.5:ENST00000561852.5:ENST00000563064.5:ENST00000564615.5:ENST00000566322.6:ENST00000564191.5:ENST00000564788.1:ENST00000568101.5:ENST00000561658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr16	75597296	75597382	16038786	0	-	0.55814	(0.53,0.59]	chr16	1288209	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-77K12.8:ADAT1	ENSG00000259992.1:ENSG00000065457.11	ENST00000564489.1:ENST00000564657.2:ENST00000568510.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr16	89914288	89914383	15812343	0	+	0.568421	(0.53,0.59]	chr16	1259252	8	UTR5	UTR5:EXON_MRNA:INTRON	RP11-566K11.7:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr17	356596	356696	16391026	0	-	0.58	(0.53,0.59]	chr17	1333539	36	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr17	28634615	28634714	16486628	0	-	0.575758	(0.53,0.59]	chr17	1348028	2	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000581064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr17	48895654	48895669	16255807	0	+	0.533333	(0.53,0.59]	chr17	1317521	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP5MC1	ENSG00000159199.14	ENST00000355938.9:ENST00000513347.1:ENST00000393366.7:ENST00000503641.5:ENST00000506855.1:ENST00000513781.5:ENST00000502964.5:ENST00000515060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr17	67940583	67940656	16333272	0	+	0.547945	(0.53,0.59]	chr17	1325034	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000577770.1:ENST00000584931.1:ENST00000580465.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr19	2736552	2736649	17425586	0	-	0.556701	(0.53,0.59]	chr19	1453659	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AC006538.4:SLC39A3	ENSG00000267001.1:ENSG00000141873.11	ENST00000586572.1:ENST00000545664.5:ENST00000269740.9:ENST00000589363.5:ENST00000589166.1:ENST00000455372.2	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr19	44893779	44893830	17349533	0	+	0.568627	(0.53,0.59]	chr19	1439205	1	CDS	CDS:EXON_MRNA	TOMM40	ENSG00000130204.13	ENST00000252487.9:ENST00000405636.6:ENST00000592434.5:ENST00000589649.1:ENST00000426677.7:ENST00000592041.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr19	48961097	48961183	17368057	0	+	0.546512	(0.53,0.59]	chr19	1442227	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAX	ENSG00000087088.20	ENST00000502487.5:ENST00000345358.12:ENST00000513545.5:ENST00000293288.12:ENST00000391871.4:ENST00000506183.5:ENST00000354470.7:ENST00000356483.8:ENST00000415969.6:ENST00000513217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	10054544	10054641	1628915	0	+	0.57732000000000006	(0.53,0.59]	chr2	161678	22	UTR3	UTR3:EXON_MRNA	KLF11	ENSG00000172059.11	ENST00000305883.6:ENST00000540845.5:ENST00000535335.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	73227122	73227221	1885287	0	+	0.545455	(0.53,0.59]	chr2	178497	13	UTR3	UTR3:EXON_MRNA	SMYD5	ENSG00000135632.12	ENST00000389501.9	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	95087256	95087356	2786433	0	-	0.55	(0.53,0.59]	chr2	247875	20	UTR3	UTR3:EXON_MRNA	MRPS5	ENSG00000144029.12	ENST00000272418.7:ENST00000345084.9:ENST00000482821.5:ENST00000461916.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	121478722	121478821	2861904	0	-	0.585859	(0.53,0.59]	chr2	255587	84	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	144429854	144429940	2929662	0	-	0.581395	(0.53,0.59]	chr2	259676	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	218249363	218249413	2388107	0	+	0.54	(0.53,0.59]	chr2	214409	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARPC2	ENSG00000163466.16	ENST00000315717.10:ENST00000295685.14:ENST00000470146.5:ENST00000477992.1:ENST00000456575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr2	219235117	219235214	2392714	0	+	0.587629	(0.53,0.59]	chr2	215483	4	CDS	CDS:EXON_MRNA	ANKZF1	ENSG00000163516.14	ENST00000409849.5:ENST00000323348.10:ENST00000477479.5:ENST00000463792.5:ENST00000410034.7:ENST00000483188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr20	34740560	34740659	17948844	0	-	0.575758	(0.53,0.59]	chr20	1520152	3	CDS	CDS:EXON_MRNA:INTRON	NCOA6	ENSG00000198646.14	ENST00000628752.2:ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr20	36244772	36244849	17774096	0	+	0.545455	(0.53,0.59]	chr20	1501728	2	CDS	CDS:EXON_MRNA	AAR2	ENSG00000131043.13	ENST00000680639.1:ENST00000397286.7:ENST00000679519.1:ENST00000680412.1:ENST00000680185.1:ENST00000679667.1:ENST00000680933.1:ENST00000320849.9:ENST00000680247.1:ENST00000680811.1:ENST00000373932.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr20	37767952	37768044	17779998	0	+	0.532609	(0.53,0.59]	chr20	1502355	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CTNNBL1	ENSG00000132792.19	ENST00000405275.6:ENST00000621317.4:ENST00000361383.11:ENST00000628103.2:ENST00000373473.5:ENST00000473857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr21	9837463	9837563	18158804	0	-	0.56	(0.53,0.59]	chr21	1541890	3	SS5_PROX	SS5_PROX:INTRON	LINC01667	ENSG00000280081.4	ENST00000651050.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr21	34887112	34887210	18227740	0	-	0.581633	(0.53,0.59]	chr21	1546939	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6:ENST00000455571.5:ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr3	47009608	47009704	3454529	0	+	0.5625	(0.53,0.59]	chr3	301116	4	UTR3	UTR3:EXON_MRNA	NBEAL2	ENSG00000160796.18	ENST00000450053.8:ENST00000651747.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr3	51663121	51663220	3475291	0	+	0.535354	(0.53,0.59]	chr3	303721	8	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5:ENST00000432863.1:ENST00000461680.1:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr3	99817907	99817979	3630196	0	+	0.569444	(0.53,0.59]	chr3	311335	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr3	114103438	114103533	4361552	0	-	0.568421	(0.53,0.59]	chr3	364067	3	EXON_PSEUDO	EXON_PSEUDO	H2BP3	ENSG00000240912.1	ENST00000465850.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr4	25748424	25748524	5361853	0	-	0.58	(0.53,0.59]	chr4	430114	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000513416.5:ENST00000512286.1:ENST00000502949.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr5	115841481	115841552	6777465	0	-	0.56338	(0.53,0.59]	chr5	520012	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000500945.2:ENST00000513322.5:ENST00000379594.7:ENST00000505993.5:ENST00000513167.1:ENST00000514775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr5	149550127	149550181	6910816	0	-	0.537037	(0.53,0.59]	chr5	528568	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr5	176384080	176384180	6988452	0	-	0.59	(0.53,0.59]	chr5	534278	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP16	ENSG00000048162.21	ENST00000619979.4:ENST00000621444.4:ENST00000614830.5:ENST00000616685.1:ENST00000618911.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr6	26273165	26273256	7101680	0	+	0.56044	(0.53,0.59]	chr6	542885	2	CDS	CDS:EXON_MRNA	H2BC10	ENSG00000278588.2	ENST00000377733.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr6	31727617	31727692	7662067	0	-	0.56	(0.53,0.59]	chr6	585094	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDAH2	ENSG00000213722.10	ENST00000375792.7:ENST00000375787.6:ENST00000483792.1:ENST00000480913.5:ENST00000416410.6:ENST00000469963.5:ENST00000436437.2:ENST00000437288.5:ENST00000375789.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr6	111559305	111559404	7897185	0	-	0.575758	(0.53,0.59]	chr6	604725	41	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAF3IP2	ENSG00000056972.20	ENST00000368761.11:ENST00000340026.10:ENST00000359831.8:ENST00000392556.8:ENST00000492671.1:ENST00000368731.6:ENST00000368735.1:ENST00000368734.5:ENST00000368730.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr6	170658428	170658528	7556969	0	+	0.56	(0.53,0.59]	chr6	576995	180	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr7	8086356	8086438	8122302	0	+	0.548781	(0.53,0.59]	chr7	621146	3	CDS	CDS:EXON_MRNA:INTRON	GLCCI1	ENSG00000106415.13	ENST00000223145.10:ENST00000489405.5:ENST00000438949.1:ENST00000482540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr9	34319462	34319558	10238893	0	+	0.583333	(0.53,0.59]	chr9	769897	12	EXON_PSEUDO	EXON_PSEUDO	SERPINH1P1	ENSG00000229207.1	ENST00000419794.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr9	34616029	34616113	10637381	0	-	0.535714	(0.53,0.59]	chr9	804288	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DCTN3	ENSG00000137100.16	ENST00000378916.8:ENST00000259632.12:ENST00000341694.6:ENST00000421919.5:ENST00000479399.5:ENST00000477738.6:ENST00000472074.1:ENST00000378913.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr9	121332503	121332603	10448277	0	+	0.59	(0.53,0.59]	chr9	786764	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GSN	ENSG00000148180.21	ENST00000373823.7:ENST00000373808.8:ENST00000432226.7:ENST00000449733.7:ENST00000394353.7:ENST00000545652.6:ENST00000373818.8:ENST00000373806.1:ENST00000477553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr9	123110848	123110947	10842283	0	-	0.535354	(0.53,0.59]	chr9	821518	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR600HG:STRBP	ENSG00000236901.6:ENSG00000165209.19	ENST00000449175.1:ENST00000530364.1:ENST00000545631.2:ENST00000478973.6:ENST00000471564.6	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA:processed_transcript	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr9	128822129	128822228	10865846	0	-	0.575758	(0.53,0.59]	chr9	823847	26	UTR3	UTR3:EXON_MRNA	SPOUT1:RP11-545E17.13	ENSG00000198917.13:ENSG00000286112.1	ENST00000361256.10:ENST00000651925.1:ENST00000467582.1	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr9	128946919	128947014	10866511	0	-	0.578947	(0.53,0.59]	chr9	824002	13	CDS	CDS:EXON_MRNA	DOLK	ENSG00000175283.8	ENST00000372586.4	protein_coding	protein_coding	protein_coding	protein_coding	0	11	2	3.3733	3.49593	3.61856	0.0529193	0.0303021	0.18423900000000001	0.129773
chr19	36149906	36149973	17308841	0	+	0.552239	(0.53,0.59]	chr19	1432255	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	7	95	2	3.17379	3.49579	3.81779	8.38179e-6	7.68216e-6	2.4235e-4	2.38248e-4
chr22	32498430	32498530	18354456	0	+	0.59	(0.53,0.59]	chr22	1560440	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.89427	3.495515	4.09676	3.98634e-4	3.14727e-5	0.00546791	7.72298e-4
chr5	80651161	80651258	6667607	0	-	0.494845	(0.49,0.53]	chr5	514741	12	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	257	3021	2	3.0283	3.4955100000000003	3.96272	1.09225e-9	1e-12	1.23587e-7	2.25522e-10
chr14	101870446	101870546	14494313	0	+	0.44	(0.42,0.455]	chr14	1132844	132	INTRON	INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000557268.5:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.46349	3.4950400000000004	3.52659	9.0025e-4	6.87022e-4	0.0102618	0.00876781
chr11	47631653	47631711	12388084	0	-	0.517241	(0.49,0.53]	chr11	957140	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MTCH2	ENSG00000109919.10	ENST00000539759.5:ENST00000302503.8:ENST00000525649.5:ENST00000530428.1:ENST00000533571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.25514	3.49504	3.73494	0.0189345	0.00227467	0.0934721	0.0209546
chr12	27716304	27716381	12803405	0	+	0.493506	(0.49,0.53]	chr12	994401	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MRPS35	ENSG00000061794.13	ENST00000536569.1:ENST00000081029.8:ENST00000538315.5:ENST00000542791.1:ENST00000542199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.25514	3.49504	3.73494	0.0189345	0.00227467	0.0934721	0.0209546
chr16	23689237	23689314	15595335	0	+	0.506494	(0.49,0.53]	chr16	1236743	1	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.25514	3.49504	3.73494	0.0189345	0.00227467	0.0934721	0.0209546
chr7	155741818	155741914	8634101	0	+	0.510417	(0.49,0.53]	chr7	659417	1	CDS	CDS:UTR3:EXON_MRNA	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.25514	3.49504	3.73494	0.0189345	0.00227467	0.0934721	0.0209546
chr16	87830022	87830120	16072428	0	-	0.408163	(0.39,0.42]	chr16	1291249	1	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.0503	3.495025	3.93975	0.0105893	0.00570576	0.0644466	0.0424438
chr2	159762936	159762993	2163184	0	+	0.403509	(0.39,0.42]	chr2	199211	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	3.0503	3.495025	3.93975	0.0105893	0.00570576	0.0644466	0.0424438
chrX	40052012	40052108	19044898	0	-	0.375	(0.36,0.39]	chrX	1618692	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	3.2928	3.494955	3.69711	2.65442e-4	1.63058e-5	0.004287	4.12921e-4
chr10	114690437	114690535	11702295	0	-	0.489796	(0.455,0.49]	chr10	893019	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABLIM1:PPIAP19	ENSG00000099204.20:ENSG00000228169.3	ENST00000651092.1:ENST00000486414.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	40	2	2.92901	3.49492	4.06083	0.00141135	3.56832e-5	0.0151901	7.81595e-4
chr22	19048439	19048507	18430152	0	-	0.602941	(0.59,1]	chr22	1570356	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	32	2	3.11647	3.4949000000000003	3.87333	0.0348991	0.00535979	0.141505	0.0406564
chr14	43300428	43300511	14265776	0	+	0.46988	(0.455,0.49]	chr14	1115305	3	EXON_PSEUDO	EXON_PSEUDO	HNRNPUP1	ENSG00000259051.1	ENST00000554987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	2.96925	3.4948250000000005	4.0204	0.00736097	0.00698725	0.0490627	0.0473262
chr16	67878535	67878631	15712322	0	+	0.489583	(0.455,0.49]	chr16	1250740	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EDC4	ENSG00000038358.15	ENST00000358933.10:ENST00000572221.5:ENST00000536072.6:ENST00000574770.5:ENST00000573992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	2.96925	3.4948250000000005	4.0204	0.00736097	0.00698725	0.0490627	0.0473262
chr2	155269632	155269691	2147242	0	+	0.474576	(0.455,0.49]	chr2	198316	1	EXON_PSEUDO	EXON_PSEUDO	ATP5F1AP2	ENSG00000227682.2	ENST00000412323.1	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	1	18	2	2.96925	3.4948250000000005	4.0204	0.00736097	0.00698725	0.0490627	0.0473262
chr3	129267988	129268040	3730530	0	+	0.461538	(0.455,0.49]	chr3	318941	2	CDS	CDS:EXON_MRNA:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.96925	3.4948250000000005	4.0204	0.00736097	0.00698725	0.0490627	0.0473262
chr7	135584831	135584919	8552668	0	+	0.465909	(0.455,0.49]	chr7	652719	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.96925	3.4948250000000005	4.0204	0.00736097	0.00698725	0.0490627	0.0473262
chr9	125338985	125339085	10461514	0	+	0.48	(0.455,0.49]	chr9	788101	10	INTRON	INTRON	GAPVD1	ENSG00000165219.22	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000265956.8:ENST00000431329.5:ENST00000436712.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.96925	3.4948250000000005	4.0204	0.00736097	0.00698725	0.0490627	0.0473262
chr11	119049776	119049837	12626482	0	-	0.491803	(0.49,0.53]	chr11	979785	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	162	2	2.32512	3.49473	4.66434	0.00306772	8.82283e-12	0.0272156	1.5554e-9
chr1	247879349	247879447	816548	0	+	0.540816	(0.53,0.59]	chr1	80729	30	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.30943	3.49468	3.67993	0.0018255	3.22778e-4	0.0183913	0.0046122
chr10	74118468	74118568	11117652	0	+	0.52	(0.49,0.53]	chr10	846311	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	188	2	3.41852	3.49466	3.5708	9.2282e-8	2.49587e-8	5.83214e-6	1.70638e-6
chr11	111853379	111853432	12603210	0	-	0.339623	(0.33,0.36]	chr11	977128	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG9:RP11-108O10.8	ENSG00000086848.15:ENSG00000258529.5	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000613181.4:ENST00000527714.5:ENST00000618252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.86073	3.494565	4.1284	0.0105608	0.00407303	0.0644466	0.0324137
chr11	112045862	112045916	12135938	0	+	0.351852	(0.33,0.36]	chr11	934810	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1:ENST00000680154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.86073	3.494565	4.1284	0.0105608	0.00407303	0.0644466	0.0324137
chr12	45921949	45922047	13312635	0	-	0.346939	(0.33,0.36]	chr12	1043356	30	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000550629.1:ENST00000547654.5:ENST00000465950.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.86073	3.494565	4.1284	0.0105608	0.00407303	0.0644466	0.0324137
chr3	150545625	150545725	4517235	0	-	0.51	(0.49,0.53]	chr3	374949	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1:ENST00000491660.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.09506	3.494555	4.89405	0.00820526	2.57983e-4	0.05339	0.00419998
chrX	65733183	65733280	18716292	0	+	0.42268	(0.42,0.455]	chrX	1596853	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	9	105	2	2.57196	3.49418	4.4164	2.47052e-4	4.42895e-9	0.00405266	3.83229e-7
chr16	87404482	87404581	15801171	0	+	0.424242	(0.42,0.455]	chr16	1257525	15	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	3.4231	3.4941199999999997	3.56514	0.00112541	3.86623e-5	0.0128481	8.37229e-4
chr19	55386569	55386652	17396158	0	+	0.590361	(0.59,1]	chr19	1448670	1	CDS	CDS:EXON_MRNA	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000431533.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000558752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	86	2111	2	3.00237	3.494055	3.98574	5.2243e-7	9.51582e-11	2.57059e-5	1.30192e-8
chr2	187466258	187466355	3070162	0	-	0.391753	(0.39,0.42]	chr2	271827	22	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.23057	3.49405	3.75753	3.34829e-4	2.04026e-4	0.00509483	0.00320361
chr12	6970195	6970280	13188915	0	-	0.588235	(0.53,0.59]	chr12	1032815	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1:ENST00000542294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	85	2	3.24518	3.4940350000000002	3.74289	1.39722e-5	1.27332e-5	3.68625e-4	3.61675e-4
chr1	156310557	156310623	1314037	0	-	0.5	(0.49,0.53]	chr1	133407	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	89	2	3.41035	3.494005	3.57766	1.62733e-5	1.08022e-6	4.52905e-4	4.27337e-5
chr7	873231	873331	8093909	0	+	0.45	(0.42,0.455]	chr7	618493	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	3.10874	3.49398	3.87922	5.40397e-4	1.04705e-4	0.00688813	0.0020295
chr20	2461860	2461928	17878929	0	-	0.617647	(0.59,1]	chr20	1512814	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.44587	3.49385	4.54183	0.0105307	0.0070583	0.0644466	0.0478044
chr1	166853681	166853780	519995	0	+	0.40404	(0.39,0.42]	chr1	55860	34	UTR3	UTR3:EXON_MRNA	POGK	ENSG00000143157.12	ENST00000367876.9:ENST00000367875.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.49426	3.4937500000000004	4.49324	0.0085468	0.00108192	0.0551026	0.0124943
chr8	17230421	17230520	9729254	0	-	0.333333	(0.33,0.36]	chr8	735884	56	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.64851	3.493735	4.33896	0.00492353	0.00182033	0.0366648	0.0183913
chr1	100874041	100874135	1200260	0	-	0.414894	(0.39,0.42]	chr1	117207	1	CDS	CDS:UTR3:EXON_MRNA	EXTL2	ENSG00000162694.14	ENST00000535414.5:ENST00000370113.7:ENST00000370114.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.70591	3.493595	4.28128	0.0185716	0.00342611	0.0932453	0.0283456
chr15	89291612	89291663	15094014	0	+	0.392157	(0.39,0.42]	chr15	1187218	1	CDS	CDS:EXON_MRNA:INTRON	FANCI	ENSG00000140525.19	ENST00000674831.1:ENST00000300027.12:ENST00000310775.12:ENST00000676003.1:ENST00000447611.6:ENST00000565522.5:ENST00000561894.1:ENST00000566895.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.70591	3.493595	4.28128	0.0185716	0.00342611	0.0932453	0.0283456
chr17	47622598	47622695	16251593	0	+	0.412371	(0.39,0.42]	chr17	1316624	8	UTR3	UTR3:EXON_MRNA:INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000528565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.70591	3.493595	4.28128	0.0185716	0.00342611	0.0932453	0.0283456
chr4	67618996	67619096	5452661	0	-	0.41	(0.39,0.42]	chr4	436028	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000514261.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.70591	3.493595	4.28128	0.0185716	0.00342611	0.0932453	0.0283456
chr18	23544343	23544434	17037397	0	-	0.538462	(0.53,0.59]	chr18	1400579	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.54844	3.4935349999999996	4.43863	0.00663226	0.00254763	0.0461575	0.0233955
chr3	33093784	33093861	4111941	0	-	0.532468	(0.53,0.59]	chr3	343558	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.54844	3.4935349999999996	4.43863	0.00663226	0.00254763	0.0461575	0.0233955
chr1	28200859	28200956	912950	0	-	0.360825	(0.36,0.39]	chr1	95445	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	2.75447	3.493475	4.23248	3.28568e-4	1.28371e-5	0.00467693	3.70041e-4
chr1	39562137	39562203	952929	0	-	0.484848	(0.455,0.49]	chr1	100528	2	CDS	CDS:UTR3:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000492468.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000530186.1:ENST00000421687.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	3.33595	3.49337	3.65079	3.61776e-4	2.70224e-5	0.00544764	6.22285e-4
chr1	247299255	247299352	1604017	0	-	0.515464	(0.49,0.53]	chr1	159286	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.70307	3.493195	4.28332	0.00363585	0.00338762	0.0298137	0.0288632
chr16	69462481	69462534	15723944	0	+	0.528302	(0.49,0.53]	chr16	1252040	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6:ENST00000561792.6:ENST00000568237.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.70307	3.493195	4.28332	0.00363585	0.00338762	0.0298137	0.0288632
chr1	40073095	40073191	954666	0	-	0.395833	(0.39,0.42]	chr1	100850	5	UTR3	UTR3:EXON_MRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	2.5823	3.492745	4.40319	0.00246531	3.72195e-6	0.0230262	1.21063e-4
chr21	33553704	33553803	18101194	0	+	0.454545	(0.42,0.455]	chr21	1534527	31	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.43733	3.4926250000000003	4.54792	0.0103896	9.66045e-4	0.0640167	0.0115185
chr7	103652619	103652689	8964830	0	-	0.428571	(0.42,0.455]	chr7	686335	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.43733	3.4926250000000003	4.54792	0.0103896	9.66045e-4	0.0640167	0.0115185
chr19	7967564	7967639	17447987	0	-	0.653333	(0.59,1]	chr19	1458197	1	CDS	CDS:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.04362	3.4924600000000003	4.9413	0.036186	0.00191468	0.145024	0.0190905
chrX	81298075	81298169	18750152	0	+	0.319149	(0.29,0.33]	chrX	1600060	10	UTR3	UTR3:EXON_MRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	3.08169	3.4924600000000003	3.90323	0.00114594	9.15815e-5	0.0130468	0.00168607
chr10	70203154	70203186	11560610	0	-	0.375	(0.36,0.39]	chr10	879626	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.38564	3.4921699999999998	4.5987	0.0476159	9.0208e-4	0.17993	0.0102618
chr14	35262844	35262940	14225073	0	+	0.375	(0.36,0.39]	chr14	1113783	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	PRORP:RP11-561B11.2:RPL9P3	ENSG00000100890.16:ENSG00000258790.1:ENSG00000240392.1	ENST00000604948.5:ENST00000557565.1:ENST00000534898.9:ENST00000321130.14:ENST00000250377.11:ENST00000603544.5:ENST00000605870.5:ENST00000557404.3:ENST00000475906.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	16	2	2.38564	3.4921699999999998	4.5987	0.0476159	9.0208e-4	0.17993	0.0102618
chr2	135133860	135133946	2080540	0	+	0.360465	(0.36,0.39]	chr2	195155	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.38564	3.4921699999999998	4.5987	0.0476159	9.0208e-4	0.17993	0.0102618
chr2	202896141	202896219	3128842	0	-	0.371795	(0.36,0.39]	chr2	276653	2	CDS	CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000478869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.38564	3.4921699999999998	4.5987	0.0476159	9.0208e-4	0.17993	0.0102618
chr2	226998616	226998715	2412617	0	+	0.373737	(0.36,0.39]	chr2	216865	32	UTR3	UTR3:EXON_MRNA	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.38564	3.4921699999999998	4.5987	0.0476159	9.0208e-4	0.17993	0.0102618
chr6	34285860	34285960	7672460	0	-	0.39	(0.36,0.39]	chr6	588026	63	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.38564	3.4921699999999998	4.5987	0.0476159	9.0208e-4	0.17993	0.0102618
chr3	47875684	47875756	4164006	0	-	0.597222	(0.59,1]	chr3	348543	1	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3:ENST00000462206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.32455	3.492115	4.65968	0.0520547	0.00413632	0.193787	0.0324998
chr3	129272329	129272415	3730579	0	+	0.639535	(0.59,1]	chr3	318960	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	COPG1:MIR6826	ENSG00000181789.14:ENSG00000278658.1	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000617808.1:ENST00000514478.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	1	29	2	2.32455	3.492115	4.65968	0.0520547	0.00413632	0.193787	0.0324998
chr4	41935128	41935217	4809287	0	+	0.606742	(0.59,1]	chr4	396911	1	UTR5	UTR5:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000508448.5:ENST00000325094.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.32455	3.492115	4.65968	0.0520547	0.00413632	0.193787	0.0324998
chr1	235110993	235111090	1560082	0	-	0.360825	(0.36,0.39]	chr1	156012	18	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	22	220	2	3.24494	3.4920850000000003	3.73923	2.50404e-7	2.4567e-10	1.3784e-5	3.01901e-8
chr13	24434688	24434786	13932632	0	-	0.5	(0.49,0.53]	chr13	1093108	4	CDS	CDS:EXON_MRNA	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.3044	3.4920599999999995	4.67972	0.0509448	6.94757e-4	0.181793	0.00876781
chr7	73440703	73440802	8853466	0	-	0.525253	(0.49,0.53]	chr7	675865	4	UTR3	UTR3:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.3044	3.4920599999999995	4.67972	0.0509448	6.94757e-4	0.181793	0.00876781
chr8	106697915	106698013	9997310	0	-	0.520408	(0.49,0.53]	chr8	753977	6	EXON_PSEUDO	EXON_PSEUDO	TAGLN2P1	ENSG00000253676.1	ENST00000524097.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	2.3044	3.4920599999999995	4.67972	0.0509448	6.94757e-4	0.181793	0.00876781
chr11	840278	840371	12228229	0	-	0.677419	(0.59,1]	chr11	943906	7	UTR3	UTR3:EXON_MRNA	POLR2L	ENSG00000177700.6	ENST00000534030.1:ENST00000322028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	29	2	2.61074	3.491985	4.37323	0.025486	0.00990413	0.117089	0.061536
chr19	1815337	1815428	17420308	0	-	0.681319	(0.59,1]	chr19	1452894	2	UTR3	UTR3:EXON_MRNA	REXO1	ENSG00000079313.15	ENST00000170168.9	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.61074	3.491985	4.37323	0.025486	0.00990413	0.117089	0.061536
chr7	73570789	73570880	8854568	0	-	0.703297	(0.59,1]	chr7	676026	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000488915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.61074	3.491985	4.37323	0.025486	0.00990413	0.117089	0.061536
chr9	121180603	121180702	10835881	0	-	0.292929	(0.29,0.33]	chr9	820919	26	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	3.0357	3.49193	3.94816	4.36647e-5	2.57518e-7	0.00101315	1.25763e-5
chr7	129016982	129017056	9060805	0	-	0.486486	(0.455,0.49]	chr7	691867	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.78188	3.491885	4.20189	0.00397662	7.46087e-4	0.0322851	0.00892618
chr1	15719733	15719826	70262	0	+	0.580645	(0.53,0.59]	chr1	7839	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	3.43342	3.491715	3.55001	6.11776e-4	8.93729e-5	0.00818575	0.00165837
chr1	65598731	65598804	253289	0	+	0.547945	(0.53,0.59]	chr1	28827	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	3.43342	3.491715	3.55001	6.11776e-4	8.93729e-5	0.00818575	0.00165837
chr11	68891330	68891395	12433530	0	-	0.523077	(0.49,0.53]	chr11	966385	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPL21	ENSG00000197345.13	ENST00000450904.6:ENST00000362034.7:ENST00000565125.5:ENST00000541279.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr12	56134130	56134181	12898312	0	+	0.490196	(0.49,0.53]	chr12	1004254	2	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr14	22768039	22768125	14174744	0	+	0.523256	(0.49,0.53]	chr14	1110314	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000483939.6:ENST00000612549.6:ENST00000473744.5:ENST00000442110.6:ENST00000431881.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000556473.1:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr17	80141781	80141848	16704308	0	-	0.492537	(0.49,0.53]	chr17	1376676	1	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000647795.1:ENST00000576547.2:ENST00000575957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr18	35126947	35127017	16822579	0	+	0.528571	(0.49,0.53]	chr18	1387330	1	CDS	CDS:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr19	6421277	6421317	17442281	0	-	0.525	(0.49,0.53]	chr19	1456832	1	CDS	CDS:UTR5:EXON_MRNA	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000619396.4:ENST00000599395.5:ENST00000595112.5:ENST00000595548.5:ENST00000595258.1:ENST00000597704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr2	27199963	27200057	2569349	0	-	0.510638	(0.49,0.53]	chr2	231180	5	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr2	202201383	202201466	3127205	0	-	0.518072	(0.49,0.53]	chr2	276433	1	EXON_PSEUDO	EXON_PSEUDO	DAZAP2P1	ENSG00000223825.5	ENST00000475212.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr3	48630437	48630515	4168907	0	-	0.5	(0.49,0.53]	chr3	349675	1	CDS	CDS:UTR3:EXON_MRNA	SLC26A6	ENSG00000225697.13	ENST00000420764.6:ENST00000395550.7:ENST00000337000.12:ENST00000307364.10:ENST00000383733.7:ENST00000489483.5:ENST00000358747.10:ENST00000480524.5:ENST00000455886.6:ENST00000496469.1:ENST00000421649.5:ENST00000444531.5:ENST00000414944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr7	55732143	55732239	8289105	0	+	0.510417	(0.49,0.53]	chr7	631307	1	EXON_PSEUDO	EXON_PSEUDO	SUMO2P3	ENSG00000224971.1	ENST00000438311.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chrX	30218775	30218870	18640659	0	+	0.515789	(0.49,0.53]	chrX	1590509	2	CDS	CDS:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.04107	3.4914199999999997	3.94177	0.0104929	0.00533879	0.063428	0.0392268
chr1	32228524	32228609	127539	0	+	0.552941	(0.53,0.59]	chr1	15805	1	CDS	CDS:UTR3:EXON_MRNA	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	156	2	3.37174	3.49123	3.61072	5.64197e-6	4.6201e-8	1.87384e-4	2.87475e-6
chr2	58461838	58461935	2674829	0	-	0.505155	(0.49,0.53]	chr2	239463	17	EXON_PSEUDO	EXON_PSEUDO	AC007238.1	ENSG00000231043.3	ENST00000434096.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	24	2	2.30264	3.49118	4.67972	0.0165402	6.94757e-4	0.087611	0.00876781
chr8	140531443	140531543	10132157	0	-	0.69	(0.59,1]	chr8	760954	114	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	30	2	2.99438	3.490945	3.98751	0.0301044	0.00776449	0.129773	0.050813
chr1	51803888	51803964	1016438	0	-	0.434211	(0.42,0.455]	chr1	105231	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	45	2	3.19078	3.490905	3.79103	0.00310864	8.61353e-6	0.0274272	2.43348e-4
chr1	21848892	21848961	890907	0	-	0.608696	(0.59,1]	chr1	92360	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.93771	3.490885	4.04406	0.00168288	4.72081e-6	0.0175167	1.48019e-4
chr11	10797240	10797336	12272531	0	-	0.375	(0.36,0.39]	chr11	948968	3	UTR3	UTR3:EXON_MRNA	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	2.94781	3.49071	4.03361	3.10006e-4	1.71457e-6	0.0044733	6.95799e-5
chr22	21761848	21761948	18442369	0	-	0.35	(0.33,0.36]	chr22	1572508	23	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	14	115	2	3.04428	3.4904200000000003	3.93656	1.33615e-6	1.28538e-8	5.12039e-5	1.05411e-6
chr6	149811222	149811321	7482134	0	+	0.363636	(0.36,0.39]	chr6	571814	7	UTR3	UTR3:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.82476	3.4902949999999997	4.15583	8.21459e-4	1.9188e-5	0.0102028	4.68725e-4
chr6	31636509	31636608	7115920	0	+	0.575758	(0.53,0.59]	chr6	545903	1	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000487839.1:ENST00000492691.5:ENST00000462617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	139	2	2.96924	3.490205	4.01117	1.63746e-5	3.42117e-8	4.55421e-4	2.22352e-6
chr12	93401172	93401271	13019165	0	+	0.323232	(0.29,0.33]	chr12	1013446	19	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	3.28545	3.49004	3.69463	4.11768e-5	3.13406e-5	8.82748e-4	7.70685e-4
chr1	167772345	167772416	524418	0	+	0.352113	(0.33,0.36]	chr1	56260	2	CDS	CDS:EXON_MRNA:INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	62	2	2.28792	3.4896900000000004	4.69146	0.0239159	4.88885e-9	0.112531	4.16008e-7
chr1	35396610	35396670	137222	0	+	0.433333	(0.42,0.455]	chr1	16893	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1:ENST00000470175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.33282	3.48953	4.64624	0.00677333	8.75333e-4	0.0462932	0.0101169
chr3	155870649	155870722	3823969	0	+	0.739726	(0.59,1]	chr3	326136	1	UTR5	UTR5:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	3.15632	3.4890499999999998	3.82178	6.43048e-4	2.76767e-4	0.00850474	0.00409634
chr3	13397422	13397488	4047040	0	-	0.575758	(0.53,0.59]	chr3	339718	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.65894	3.4889399999999995	4.31894	0.0193255	7.82085e-6	0.0943643	2.24148e-4
chr15	59639030	59639127	15315455	0	-	0.268041	[0,0.29]	chr15	1208757	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTF2A2	ENSG00000140307.11	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5:ENST00000396061.5:ENST00000484743.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.80134	3.4888700000000004	4.1764	0.0049344	1.69626e-5	0.0379087	4.28575e-4
chr14	96564954	96565050	14476233	0	+	0.375	(0.36,0.39]	chr14	1130889	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1:ENST00000553940.1:ENST00000555508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	3.44207	3.48868	3.53529	6.0978e-5	1.3128e-5	0.00132411	3.44837e-4
chr12	110339341	110339403	13085831	0	+	0.403226	(0.39,0.42]	chr12	1020518	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	3.3111	3.488645	3.66619	2.11919e-4	2.5272e-6	0.00357806	8.75392e-5
chr3	40312014	40312096	3429118	0	+	0.390244	(0.39,0.42]	chr3	298224	1	UTR3	UTR3:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	3.3111	3.488645	3.66619	2.11919e-4	2.5272e-6	0.00357806	8.75392e-5
chr19	23827753	23827851	17276791	0	+	0.469388	(0.455,0.49]	chr19	1427763	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	3	40	2	3.32637	3.48858	3.65079	3.61776e-4	1.64563e-4	0.00544764	0.00269001
chr12	112267076	112267155	13094618	0	+	0.582278	(0.53,0.59]	chr12	1021570	1	EXON_SMALL	EXON_SMALL	RN7SKP71	ENSG00000201428.1	ENST00000364558.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	7	93	2	2.89296	3.488315	4.08367	5.81444e-5	1.14839e-6	0.00116944	4.9396e-5
chr1	99747361	99747430	1197737	0	-	0.463768	(0.455,0.49]	chr1	116908	2	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	3.30845	3.48792	3.66739	2.02214e-5	8.3294e-6	5.39633e-4	2.37165e-4
chr12	52897427	52897527	13336911	0	-	0.59	(0.53,0.59]	chr12	1048601	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	48	2	2.94125	3.48789	4.03453	0.0012261800000000001	4.6e-5	0.0135648	9.56296e-4
chr19	38838463	38838530	17561086	0	-	0.552239	(0.53,0.59]	chr19	1475071	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.94125	3.48789	4.03453	0.0012261800000000001	4.6e-5	0.0135648	9.56296e-4
chr8	20221397	20221496	9220111	0	+	0.484848	(0.455,0.49]	chr8	704735	11	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.95526	3.48783	4.0204	0.00736097	2.88167e-4	0.0490627	0.00423739
chr6	159787854	159787902	8049158	0	-	0.3125	(0.29,0.33]	chr6	615296	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1:ENST00000537390.5:ENST00000536394.1:ENST00000536607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.73178	3.487825	4.24387	0.00360855	0.00263476	0.0296421	0.0239118
chr8	18061685	18061740	9732854	0	-	0.4	(0.39,0.42]	chr8	736301	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000521542.2:ENST00000517409.2:ENST00000519545.6:ENST00000636719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.88836	3.4876899999999997	4.08702	0.0102432	3.01232e-5	0.062872	6.78876e-4
chr1	220062756	220062855	1511541	0	-	0.484848	(0.455,0.49]	chr1	151153	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BPNT1	ENSG00000162813.18	ENST00000544404.5:ENST00000414869.6:ENST00000322067.12:ENST00000469520.6:ENST00000354807.7:ENST00000482136.5:ENST00000463953.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.10347	3.487665	4.87186	0.0313707	2.33781e-4	0.13127	0.00385436
chr5	79284426	79284524	6662406	0	-	0.469388	(0.455,0.49]	chr5	514361	4	EXON_PSEUDO	EXON_PSEUDO	RPS3AP20	ENSG00000213757.3	ENST00000474167.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	48	2	2.9967	3.487645	3.97859	0.00650423	2.2191e-6	0.0454205	7.82023e-5
chr22	22484518	22484616	18444727	0	-	0.27551	[0,0.29]	chr22	1572767	2	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.0735	3.4876300000000002	3.90176	0.00977224	0.00785095	0.0611259	0.0520241
chr4	146255715	146255812	5710118	0	-	0.278351	[0,0.29]	chr4	452139	19	UTR3	UTR3:EXON_MRNA	SLC10A7	ENSG00000120519.15	ENST00000432059.6:ENST00000335472.12	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.0735	3.4876300000000002	3.90176	0.00977224	0.00785095	0.0611259	0.0520241
chr15	89201166	89201265	15093500	0	+	0.414141	(0.39,0.42]	chr15	1187100	59	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.85416	3.48738	4.1206	0.00597537	0.00225069	0.0428562	0.021386
chr9	89316425	89316517	10349740	0	+	0.282609	[0,0.29]	chr9	779005	1	UTR3	UTR3:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.82387	3.48728	4.15069	2.4558e-4	3.7616e-5	0.00371192	9.04244e-4
chr12	116041792	116041892	13555795	0	-	0.46	(0.455,0.49]	chr12	1067116	188	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	3.24286	3.48714	3.73142	2.77105e-4	2.35261e-4	0.00444204	0.00356397
chr11	43342653	43342751	11920009	0	+	0.377551	(0.36,0.39]	chr11	910889	1	UTR3	UTR3:EXON_MRNA	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.1437	3.48711	4.83052	0.0340515	3.15227e-4	0.141465	0.00452711
chr3	32564316	32564416	4110775	0	-	0.37	(0.36,0.39]	chr3	343397	180	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.1437	3.48711	4.83052	0.0340515	3.15227e-4	0.141465	0.00452711
chr2	37099408	37099507	2597007	0	-	0.343434	(0.33,0.36]	chr2	233829	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	3.25033	3.48699	3.72365	3.19155e-4	4.9864e-5	0.00491578	0.0010249
chr5	109335486	109335583	6754746	0	-	0.309278	(0.29,0.33]	chr5	518800	9	UTR3	UTR3:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	2.97978	3.486975	3.99417	8.83116e-5	3.53734e-6	0.00164121	1.27543e-4
chr12	54402000	54402093	13343787	0	-	0.591398	(0.59,1]	chr12	1049779	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000552583.1:ENST00000551564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	1.96416	3.486805	5.00945	0.044741	0.00149725	0.166115	0.0159607
chr14	105143481	105143559	14799985	0	-	0.628205	(0.59,1]	chr14	1160104	1	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	1.96416	3.486805	5.00945	0.044741	0.00149725	0.166115	0.0159607
chr19	5278033	5278133	17209952	0	+	0.55	(0.53,0.59]	chr19	1415256	4	EXON_PSEUDO	EXON_PSEUDO	RPL32P34	ENSG00000239524.2	ENST00000486380.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	41	2	2.7898	3.486765	4.18373	0.0128364	1.85867e-5	0.0719798	4.56627e-4
chr7	65979398	65979450	8834569	0	-	0.557692	(0.53,0.59]	chr7	674601	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.7898	3.486765	4.18373	0.0128364	1.85867e-5	0.0719798	4.56627e-4
chr8	21977769	21977843	9221834	0	+	0.418919	(0.39,0.42]	chr8	704949	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.4124	3.486685	3.56097	6.12149e-4	9.95835e-5	0.00818575	0.00180006
chr11	57698940	57699035	11952125	0	+	0.631579	(0.59,1]	chr11	914704	5	CDS	CDS:EXON_MRNA	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000287169.8:ENST00000529480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	31	2	3.1277	3.4866349999999997	3.84557	0.0410704	0.00490589	0.163285	0.0366648
chr17	41754888	41754983	16542973	0	-	0.578947	(0.53,0.59]	chr17	1356256	4	UTR3	UTR3:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.20093	3.486575	4.77222	0.00507963	6.67251e-4	0.037544	0.00867533
chr11	76350090	76350186	12468627	0	-	0.354167	(0.33,0.36]	chr11	969805	3	UTR3	UTR3:EXON_MRNA	THAP12	ENSG00000137492.9	ENST00000682527.1:ENST00000260045.8:ENST00000529901.1:ENST00000684059.1:ENST00000683600.1:ENST00000682046.1:ENST00000682978.1:ENST00000684702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.7655	3.48653	4.20756	0.0175892	0.00386591	0.0918323	0.0310764
chr15	27111093	27111193	14833637	0	+	0.34	(0.33,0.36]	chr15	1164206	839	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.7655	3.48653	4.20756	0.0175892	0.00386591	0.0918323	0.0310764
chr5	88274949	88275048	6077484	0	+	0.343434	(0.33,0.36]	chr5	476639	56	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM161B-AS1	ENSG00000247828.8	ENST00000658478.1:ENST00000501869.7:ENST00000654762.1:ENST00000666577.1:ENST00000658094.1:ENST00000504922.5:ENST00000661627.1:ENST00000663476.1:ENST00000669353.1:ENST00000664546.1:ENST00000663490.1:ENST00000661377.1:ENST00000653918.1:ENST00000668471.1:ENST00000659093.1:ENST00000504636.2:ENST00000666808.1:ENST00000671394.1:ENST00000661351.1:ENST00000662970.1:ENST00000660783.1:ENST00000670030.1:ENST00000664462.1:ENST00000670451.1:ENST00000670873.1:ENST00000501715.6:ENST00000657972.1:ENST00000658611.1:ENST00000504769.5:ENST00000653898.1:ENST00000667139.1:ENST00000656152.1:ENST00000659215.1:ENST00000669465.1:ENST00000659938.1:ENST00000507736.2:ENST00000667511.1:ENST00000665926.1:ENST00000513694.2:ENST00000496733.6:ENST00000510087.6:ENST00000506584.5:ENST00000669796.1:ENST00000512724.5:ENST00000668037.1:ENST00000657617.1:ENST00000667127.1:ENST00000659005.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.7655	3.48653	4.20756	0.0175892	0.00386591	0.0918323	0.0310764
chr5	111129817	111129915	6144741	0	+	0.357143	(0.33,0.36]	chr5	480259	31	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.7655	3.48653	4.20756	0.0175892	0.00386591	0.0918323	0.0310764
chr6	12164550	12164640	7055946	0	+	0.333333	(0.33,0.36]	chr6	540298	2	UTR3	UTR3:EXON_MRNA	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000399469.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.7655	3.48653	4.20756	0.0175892	0.00386591	0.0918323	0.0310764
chr6	159748941	159749038	7526684	0	+	0.340206	(0.33,0.36]	chr6	574489	4	UTR3	UTR3:EXON_MRNA:INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.7655	3.48653	4.20756	0.0175892	0.00386591	0.0918323	0.0310764
chr12	55993503	55993602	12897158	0	+	0.373737	(0.36,0.39]	chr12	1003857	14	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	2.88762	3.486485	4.08535	4.35345e-4	1.13346e-6	0.005869	4.90979e-5
chr7	88209338	88209395	8914250	0	-	0.526316	(0.49,0.53]	chr7	680429	1	CDS	CDS:UTR3:EXON_MRNA	SRI	ENSG00000075142.14	ENST00000265729.7:ENST00000419179.5:ENST00000472930.6:ENST00000490437.5:ENST00000394641.7:ENST00000431660.5:ENST00000457606.5:ENST00000486860.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.41364	3.486465	4.55929	0.0112538	0.00116196	0.0665375	0.0130851
chr5	181239121	181239177	7008966	0	-	0.517857	(0.49,0.53]	chr5	537317	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	165	2	3.48378	3.486455	3.48913	2.31889e-7	5.58259e-8	1.29516e-5	3.38574e-6
chr6	30722536	30722590	7112200	0	+	0.574074	(0.53,0.59]	chr6	545058	1	CDS	CDS:UTR5:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	396	2	3.06506	3.48622	3.90738	1.22181e-7	1.03788e-10	6.65314e-6	1.55189e-8
chr20	49289139	49289235	17812284	0	+	0.375	(0.36,0.39]	chr20	1506736	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	8	93	2	3.06725	3.486215	3.90518	2.06648e-4	1.4783e-8	0.00350209	1.08556e-6
chr5	43294055	43294108	6560202	0	-	0.490566	(0.49,0.53]	chr5	508349	1	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000508319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	99	2	3.34224	3.485945	3.62965	6.47355e-6	7.11626e-7	2.10845e-4	2.99017e-5
chr1	21848642	21848718	890904	0	-	0.644737	(0.59,1]	chr1	92358	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.89783	3.4858599999999997	4.07389	0.00198798	7.9402e-5	0.0195488	0.00150391
chr16	1839346	1839438	15823055	0	-	0.358696	(0.33,0.36]	chr16	1261668	2	CDS	CDS:EXON_MRNA	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000490154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	3.36959	3.485785	3.60198	0.0014168	6.01238e-4	0.0145694	0.00811676
chr7	139304636	139304736	8565416	0	+	0.45	(0.42,0.455]	chr7	653581	69	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.4231	3.48574	3.54838	0.00112541	5.9986e-4	0.0128481	0.0075062
chr1	39004055	39004150	145752	0	+	0.442105	(0.42,0.455]	chr1	18077	1	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.36247	3.485715	4.60896	0.0462889	8.72604e-7	0.176878	3.55816e-5
chr11	66761940	66762032	12426056	0	-	0.445652	(0.42,0.455]	chr11	965068	5	EXON_PSEUDO	EXON_PSEUDO	C1QBPP2	ENSG00000213409.4	ENST00000528754.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	43	2	3.31161	3.4856949999999998	3.65978	0.00186138	2.09396e-5	0.018635	5.04211e-4
chr12	56109229	56109293	12898051	0	+	0.453125	(0.42,0.455]	chr12	1004147	1	CDS	CDS:EXON_MRNA	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5:ENST00000550166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	121	2	3.37401	3.485215	3.59642	8.91936e-7	2.90588e-7	4.03075e-5	1.39298e-5
chr16	85799637	85799719	15798297	0	+	0.743902	(0.59,1]	chr16	1257131	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	236	2	3.4708	3.485195	3.49959	9.46224e-6	1.27219e-6	2.90173e-4	4.90871e-5
chr11	87309504	87309588	12054748	0	+	0.47619	(0.455,0.49]	chr11	929301	1	CDS	CDS:EXON_MRNA	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.72305	3.4851449999999997	5.24724	0.0324537	3.09759e-5	0.134899	7.62166e-4
chr3	48683939	48684039	4169398	0	-	0.49	(0.455,0.49]	chr3	349901	5	INTRON	INTRON	NCKIPSD	ENSG00000213672.8	ENST00000294129.7:ENST00000416649.6:ENST00000439518.5:ENST00000454134.1:ENST00000426678.1:ENST00000453349.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.85172	3.4851400000000003	4.1185600000000004	0.010864	2.49433e-5	0.0643837	5.8178e-4
chr2	37227543	37227642	2598190	0	-	0.353535	(0.33,0.36]	chr2	234066	1	CDS	CDS:EXON_MRNA	CEBPZ	ENSG00000115816.15	ENST00000234170.10	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.28465	3.485125	4.6856	0.0188404	3.92435e-4	0.0958835	0.00583618
chr2	60923831	60923931	1840202	0	+	0.36	(0.33,0.36]	chr2	174789	14	UTR3	UTR3:EXON_MRNA	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.28465	3.485125	4.6856	0.0188404	3.92435e-4	0.0958835	0.00583618
chr1	149842698	149842736	1286947	0	-	0.552632	(0.53,0.59]	chr1	127836	1	UTR5	UTR5:EXON_MRNA	H2AC18	ENSG00000203812.2	ENST00000369159.2	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	3.43342	3.4850250000000003	3.53663	8.93729e-5	4.77731e-5	0.00165837	0.00109049
chr6	30590883	30590974	7111580	0	+	0.428571	(0.42,0.455]	chr6	544897	3	UTR3	UTR3:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	3.05889	3.48493	3.91097	0.00524205	8.75299e-5	0.0399155	0.0016272
chr2	159767352	159767451	2163231	0	+	0.282828	[0,0.29]	chr2	199224	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.60784	3.4848350000000003	4.36183	0.00209281	0.00170062	0.0196502	0.01759
chr21	33524008	33524102	18220538	0	-	0.276596	[0,0.29]	chr21	1546376	1	UTR3	UTR3:EXON_MRNA:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.60784	3.4848350000000003	4.36183	0.00209281	0.00170062	0.0196502	0.01759
chr19	7963582	7963657	17447946	0	-	0.466667	(0.455,0.49]	chr19	1458191	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.69053	3.484795	4.27906	0.0182983	8.82347e-6	0.0925808	2.48294e-4
chr3	17159305	17159402	4059113	0	-	0.43299	(0.42,0.455]	chr3	341127	23	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.72686	3.484095	4.24133	0.00330337	0.00326918	0.0282494	0.027613
chr10	24620858	24620957	11416541	0	-	0.454545	(0.42,0.455]	chr10	870194	15	CDS	CDS:EXON_MRNA	ARHGAP21	ENSG00000107863.19	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000320481.10:ENST00000636789.1:ENST00000446003.5:ENST00000483114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	3.05889	3.48405	3.90921	0.0121657	0.00524205	0.0701019	0.0399155
chr11	48168356	48168455	11942503	0	+	0.424242	(0.42,0.455]	chr11	913473	11	UTR3	UTR3:EXON_MRNA	PTPRJ	ENSG00000149177.13	ENST00000613246.4:ENST00000418331.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	3.05889	3.48405	3.90921	0.0121657	0.00524205	0.0701019	0.0399155
chr2	70988965	70989017	2728062	0	-	0.442308	(0.42,0.455]	chr2	243108	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1:ENST00000433258.5:ENST00000466731.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.05889	3.48405	3.90921	0.0121657	0.00524205	0.0701019	0.0399155
chrX	24996326	24996420	18621473	0	+	0.425532	(0.42,0.455]	chrX	1590255	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000679301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	3.05889	3.48405	3.90921	0.0121657	0.00524205	0.0701019	0.0399155
chr10	60792218	60792289	11063671	0	+	0.450704	(0.42,0.455]	chr10	841955	2	CDS	CDS:UTR3:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	2.47621	3.484035	4.49186	0.00161397	2.17294e-9	0.0169243	2.07131e-7
chrX	142203794	142203887	19261786	0	-	0.483871	(0.455,0.49]	chrX	1636101	10	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.88121	3.4840349999999995	4.08686	1.57495e-4	9.7689e-7	0.002844	3.91836e-5
chr1	52023490	52023574	1018088	0	-	0.452381	(0.42,0.455]	chr1	105397	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1:ENST00000472624.5:ENST00000471493.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.8096	3.4839200000000003	4.15824	0.00253237	5.69008e-7	0.0233955	2.47342e-5
chr6	35574953	35575051	7676291	0	-	0.387755	(0.36,0.39]	chr6	588423	15	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.46465	3.4838549999999997	4.50306	0.00159698	1.8245e-6	0.015942	7.35552e-5
chr3	53229006	53229071	4189022	0	-	0.492308	(0.49,0.53]	chr3	353785	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1:ENST00000460243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.84493	3.4837800000000003	4.12263	0.00591451	5.26587e-4	0.0427941	0.00679103
chr2	11183137	11183237	2511605	0	-	0.43	(0.42,0.455]	chr2	226811	35	UTR3	UTR3:EXON_MRNA	ROCK2	ENSG00000134318.14	ENST00000315872.11:ENST00000616279.4	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.19078	3.48372	3.77666	0.00310864	1.85215e-4	0.0274272	0.00296795
chr10	5766565	5766638	11352462	0	-	0.424658	(0.42,0.455]	chr10	865738	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	91	2	2.89978	3.4836899999999997	4.0676	5.81698e-5	1.00836e-7	0.00128763	5.6272e-6
chr1	952069	952139	825588	0	-	0.542857	(0.53,0.59]	chr1	81730	2	CDS	CDS:EXON_MRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	1.76849	3.48366	5.19883	0.0420665	8.7034e-5	0.158792	0.00177086
chr4	151014542	151014642	5733027	0	-	0.58	(0.53,0.59]	chr4	453017	1	CDS_START	CDS_START:CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5:ENST00000514435.1:ENST00000510841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.29789	3.483625	4.66936	0.00674768	0.00103174	0.0468196	0.0121443
chr3	43565652	43565727	4145543	0	-	0.4	(0.39,0.42]	chr3	346451	1	CDS	CDS:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.94917	3.4835399999999996	4.01791	0.00121791	4.78174e-5	0.0130188	0.00109049
chr1	32036909	32036976	125794	0	+	0.41791	(0.39,0.42]	chr1	15442	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	86	2	3.45212	3.48325	3.51438	8.89542e-6	8.59055e-7	2.7461e-4	3.51359e-5
chr7	22822679	22822779	8722611	0	-	0.52	(0.49,0.53]	chr7	665845	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TOMM7	ENSG00000196683.11	ENST00000463284.2:ENST00000372879.8:ENST00000358435.9:ENST00000621567.1:ENST00000496129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	87	2	3.43884	3.483135	3.52743	7.08867e-6	3.18417e-6	2.27895e-4	1.06148e-4
chr6	147660760	147660819	7469863	0	+	0.525424	(0.49,0.53]	chr6	571304	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SAMD5:RP11-307P5.1	ENSG00000203727.4:ENSG00000227681.5	ENST00000566741.1:ENST00000427015.1:ENST00000432506.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	36	2	2.5375	3.4827000000000004	4.4279	0.00196987	0.00104367	0.0193972	0.0115928
chr15	52550137	52550236	15287489	0	-	0.434343	(0.42,0.455]	chr15	1206631	32	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.57051	3.482595	4.39468	0.0265466	0.00240483	0.120071	0.0217482
chr3	98518884	98518942	4318909	0	-	0.448276	(0.42,0.455]	chr3	360214	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5:ENST00000507411.5:ENST00000515620.5:ENST00000507944.5:ENST00000508659.5:ENST00000503621.5:ENST00000503799.5:ENST00000508071.1:ENST00000513988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.57051	3.482595	4.39468	0.0265466	0.00240483	0.120071	0.0217482
chr1	70251195	70251293	280907	0	+	0.346939	(0.33,0.36]	chr1	30224	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRSF11	ENSG00000116754.13	ENST00000370951.5:ENST00000370950.7:ENST00000484162.5:ENST00000370949.1:ENST00000461935.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.62574	3.4823500000000003	4.33896	0.00182033	0.00176861	0.0183913	0.0172426
chr15	52550935	52551035	15287497	0	-	0.35	(0.33,0.36]	chr15	1206631	40	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	8	70	2	3.13716	3.4823500000000003	3.82754	1.59791e-5	7.00235e-7	4.46084e-4	2.94691e-5
chr2	48377912	48378011	1788994	0	+	0.343434	(0.33,0.36]	chr2	172754	26	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.16	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.62574	3.4823500000000003	4.33896	0.00182033	0.00176861	0.0183913	0.0172426
chr12	57716140	57716193	12904291	0	+	0.603774	(0.59,1]	chr12	1005877	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550438.5:ENST00000550699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.84748	3.4821	4.11672	0.0222273	0.0124539	0.105595	0.0712518
chr19	4090412	4090504	17430526	0	-	0.73913	(0.59,1]	chr19	1454773	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAP2K2	ENSG00000126934.14	ENST00000262948.10:ENST00000601786.5:ENST00000600584.5:ENST00000394867.8:ENST00000597263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	29	2	2.84748	3.4821	4.11672	0.0222273	0.0124539	0.105595	0.0712518
chr1	65601488	65601585	253317	0	+	0.350515	(0.33,0.36]	chr1	28833	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	2.97592	3.4820349999999998	3.98815	4.1482e-4	1.81315e-7	0.00607555	9.3576e-6
chr4	75644931	75645031	5472862	0	-	0.37	(0.36,0.39]	chr4	438361	32	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	95	2	3.1591	3.482005	3.80491	3.27287e-5	3.78382e-8	8.018e-4	2.43338e-6
chr10	97432892	97432984	11212394	0	+	0.576087	(0.53,0.59]	chr10	852981	5	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.64475	3.481845	4.31894	0.00453071	7.82085e-6	0.0351187	2.24148e-4
chr19	40626974	40627069	17330514	0	+	0.642105	(0.59,1]	chr19	1436066	1	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000595118.5:ENST00000318809.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	180	2	2.4986	3.4818350000000002	4.46507	0.00349906	3.48634e-8	0.0296494	2.26334e-6
chr21	29321220	29321280	18089823	0	+	0.383333	(0.36,0.39]	chr21	1533691	1	UTR5	UTR5:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.93136	3.4817799999999997	4.0322	0.00811967	0.00588589	0.0528637	0.0427941
chr4	128277132	128277231	5639420	0	-	0.373737	(0.36,0.39]	chr4	449290	42	INTRON	INTRON	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.93136	3.4817799999999997	4.0322	0.00811967	0.00588589	0.0528637	0.0427941
chr5	97026616	97026686	6118854	0	+	0.371429	(0.36,0.39]	chr5	478857	1	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.93136	3.4817799999999997	4.0322	0.00811967	0.00588589	0.0528637	0.0427941
chr1	26317957	26318017	108923	0	+	0.483333	(0.455,0.49]	chr1	12977	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CD52	ENSG00000169442.9	ENST00000374213.3:ENST00000470468.1:ENST00000492808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.30139	3.481745	4.6621	0.0530131	7.84472e-4	0.195536	0.00927662
chr5	119525215	119525285	6178553	0	+	0.485714	(0.455,0.49]	chr5	482032	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000520244.6:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.30139	3.481745	4.6621	0.0530131	7.84472e-4	0.195536	0.00927662
chr7	16777854	16777911	8149446	0	+	0.45614	(0.455,0.49]	chr7	622202	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TSPAN13	ENSG00000106537.8	ENST00000262067.5:ENST00000466195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.30139	3.481745	4.6621	0.0530131	7.84472e-4	0.195536	0.00927662
chr2	99195132	99195232	1952290	0	+	0.32	(0.29,0.33]	chr2	185453	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-111H13.1:RP11-38C17.1:MRPL30	ENSG00000241962.9:ENSG00000273155.1:ENSG00000185414.20	ENST00000424491.5:ENST00000410042.1:ENST00000473743.5:ENST00000338148.8:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	3.33658	3.481705	3.62683	6.18968e-4	1.69227e-4	0.00822794	0.00275464
chr15	52551035	52551134	15287498	0	-	0.323232	(0.29,0.33]	chr15	1206631	41	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	3.31614	3.4816149999999997	3.64709	3.76873e-4	3.2999e-4	0.00523508	0.00504024
chr17	63593787	63593886	16317592	0	+	0.363636	(0.36,0.39]	chr17	1323671	48	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	3.2928	3.48129	3.66978	3.25031e-4	2.65442e-4	0.00463603	0.004287
chr12	49752972	49753027	12869160	0	+	0.509091	(0.49,0.53]	chr12	999609	1	CDS	CDS:UTR5:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000551154.5:ENST00000546796.5:ENST00000549966.5:ENST00000547832.5:ENST00000547187.5:ENST00000267115.10:ENST00000552699.5:ENST00000552635.5:ENST00000546914.5:ENST00000549445.5:ENST00000550951.5:ENST00000549385.5:ENST00000548201.5:ENST00000423828.5:ENST00000550445.5:ENST00000549130.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	3.23781	3.481205	3.7246	5.17993e-5	1.36405e-5	0.00115752	3.54667e-4
chr5	146132989	146133081	6891244	0	-	0.51087	(0.49,0.53]	chr5	527493	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	102	2	1.85272	3.4811699999999997	5.10962	0.0211739	1.1885e-10	0.101864	1.58081e-8
chr6	7200212	7200312	7030869	0	+	0.31	(0.29,0.33]	chr6	538711	105	INTRON	INTRON	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	3.33544	3.481135	3.62683	0.0016889	6.18968e-4	0.0165476	0.00822794
chr14	54989027	54989119	14636978	0	-	0.369565	(0.36,0.39]	chr14	1146604	1	CDS	CDS:EXON_MRNA:INTRON	WDHD1	ENSG00000198554.12	ENST00000360586.8:ENST00000420358.2:ENST00000567693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.06292	3.4810499999999998	3.89918	0.00499846	1.0624e-4	0.0370021	0.00205241
chr1	112671418	112671517	411486	0	+	0.363636	(0.36,0.39]	chr1	40540	14	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	29	264	2	3.01743	3.4809900000000003	3.94455	1.01896e-7	4.01775e-11	6.37227e-6	6.05757e-9
chr7	128089624	128089692	8519350	0	+	0.573529	(0.53,0.59]	chr7	649815	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5:ENST00000485871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	60	2	2.79781	3.48082	4.16383	0.00659193	5.37378e-5	0.0454205	0.00109172
chr11	17435926	17436011	12297173	0	-	0.505882	(0.49,0.53]	chr11	950707	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABCC8:SDHCP4	ENSG00000006071.16:ENSG00000255035.2	ENST00000643562.1:ENST00000644772.1:ENST00000302539.9:ENST00000389817.8:ENST00000683693.1:ENST00000646993.1:ENST00000646592.1:ENST00000684253.1:ENST00000682442.1:ENST00000684313.1:ENST00000683136.1:ENST00000683456.1:ENST00000684593.1:ENST00000684288.1:ENST00000682215.1:ENST00000642611.2:ENST00000644484.1:ENST00000682805.1:ENST00000684404.1:ENST00000683365.1:ENST00000683153.1:ENST00000684157.1:ENST00000682140.1:ENST00000524561.2:ENST00000682110.1:ENST00000684010.1:ENST00000684442.1:ENST00000682204.1:ENST00000682528.1:ENST00000684711.1:ENST00000682965.1:ENST00000682288.1:ENST00000684332.1:ENST00000684555.1:ENST00000684571.1:ENST00000682673.1:ENST00000682051.1:ENST00000684371.1:ENST00000682185.1:ENST00000646902.1:ENST00000643260.1:ENST00000647086.1:ENST00000642271.1:ENST00000683725.1:ENST00000646003.1:ENST00000647015.1:ENST00000683562.1:ENST00000644675.1:ENST00000644757.1:ENST00000683522.1:ENST00000683377.1:ENST00000683093.1:ENST00000646207.1:ENST00000645760.1:ENST00000642902.1:ENST00000645884.1:ENST00000645076.1:ENST00000647158.1:ENST00000646276.1:ENST00000645744.1:ENST00000647013.1:ENST00000527905.5:ENST00000644542.1:ENST00000644472.1:ENST00000683253.1:ENST00000532728.6:ENST00000644649.1:ENST00000683531.1:ENST00000528202.6:ENST00000635881.1:ENST00000526002.2:ENST00000682199.1:ENST00000532834.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	2	32	2	3.4415	3.480655	3.51981	9.98297e-4	6.88328e-4	0.0111246	0.00876781
chr11	9286521	9286588	12265165	0	-	0.313433	(0.29,0.33]	chr11	948400	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	80	2	2.80132	3.4805450000000002	4.15977	4.91954e-4	5.26055e-9	0.00690147	4.44708e-7
chr16	67877508	67877582	15712308	0	+	0.554054	(0.53,0.59]	chr16	1250732	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EDC4	ENSG00000038358.15	ENST00000358933.10:ENST00000572221.5:ENST00000536072.6:ENST00000574770.5:ENST00000573992.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.65894	3.4804449999999996	4.30195	0.0193255	0.00421989	0.0943643	0.0328662
chr20	45425909	45425993	17801724	0	+	0.547619	(0.53,0.59]	chr20	1505128	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PIGT:MIR6812	ENSG00000124155.18:ENSG00000273555.1	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000638714.1:ENST00000640542.1:ENST00000640210.1:ENST00000640194.1:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000638927.1:ENST00000638277.1:ENST00000638241.1:ENST00000640253.1:ENST00000638691.1:ENST00000424705.2:ENST00000640123.1:ENST00000619733.1:ENST00000638967.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	20	2	2.65894	3.4804449999999996	4.30195	0.0193255	0.00421989	0.0943643	0.0328662
chr22	41828399	41828498	18383153	0	+	0.545455	(0.53,0.59]	chr22	1564977	27	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.65894	3.4804449999999996	4.30195	0.0193255	0.00421989	0.0943643	0.0328662
chr22	42583914	42584011	18523992	0	-	0.546392	(0.53,0.59]	chr22	1581870	3	UTR3	UTR3:EXON_MRNA	POLDIP3	ENSG00000100227.18	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000617178.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.65894	3.4804449999999996	4.30195	0.0193255	0.00421989	0.0943643	0.0328662
chr6	31509809	31509909	7115421	0	+	0.58	(0.53,0.59]	chr6	545680	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.65894	3.4804449999999996	4.30195	0.0193255	0.00421989	0.0943643	0.0328662
chr11	9287701	9287753	12265179	0	-	0.384615	(0.36,0.39]	chr11	948407	1	CDS	CDS:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	3.06114	3.4801599999999997	3.89918	1.59276e-4	1.0624e-4	0.00263091	0.00205241
chr16	18317967	18318067	15874494	0	-	0.51	(0.49,0.53]	chr16	1268640	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NPIPA8:RP11-1212A22.9	ENSG00000214940.8:ENSG00000285628.1	ENST00000525596.5:ENST00000541810.5:ENST00000648391.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	18	2	2.72252	3.480055	4.23759	0.0161474	0.00436474	0.0860154	0.0335517
chr21	43695280	43695380	18135747	0	+	0.37	(0.36,0.39]	chr21	1538248	20	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	3.46497	3.4796899999999997	3.49441	0.00105709	7.81559e-4	0.0123035	0.00927662
chr22	21762446	21762545	18442375	0	-	0.525253	(0.49,0.53]	chr22	1572508	29	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	12	135	2	3.07125	3.47968	3.88811	1.98381e-6	7.53625e-8	7.10809e-5	4.8644e-6
chr21	29067555	29067630	18202059	0	-	0.453333	(0.42,0.455]	chr21	1544749	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5:ENST00000494296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	116	2	3.13782	3.479615	3.82141	1.04965e-5	3.64652e-8	3.14191e-4	2.35419e-6
chr11	6613359	6613458	12249909	0	-	0.414141	(0.39,0.42]	chr11	946834	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	5	58	2	2.91508	3.47954	4.044	4.41174e-4	1.34261e-6	0.0062930699999999996	5.13723e-5
chr7	139575127	139575207	9103411	0	-	0.6625	(0.59,1]	chr7	694636	1	CDS	CDS:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6	protein_coding	protein_coding	protein_coding	protein_coding	1	29	2	2.69477	3.479155	4.26354	0.020208	0.0134233	0.0978331	0.0743429
chr19	12668166	12668262	17469919	0	-	0.635417	(0.59,1]	chr19	1462817	2	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	52	2	1.82129	3.4790400000000004	5.13679	0.0227814	9.28022e-4	0.105293	0.0111748
chr11	59594009	59594091	12400793	0	-	0.52439	(0.49,0.53]	chr11	959425	1	CDS	CDS:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1:ENST00000528903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	3.01617	3.47897	3.94177	0.0104929	8.62231e-4	0.063428	0.0100487
chr7	55999256	55999349	8290403	0	+	0.505376	(0.49,0.53]	chr7	631447	3	UTR3	UTR3:EXON_MRNA	NIPSNAP2	ENSG00000146729.10	ENST00000446778.5:ENST00000322090.8:ENST00000497279.5:ENST00000415967.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	81	2	2.76018	3.4789	4.19762	1.35342e-4	4.23721e-7	0.0025037	1.92035e-5
chr8	37862894	37862994	9794206	0	-	0.48	(0.455,0.49]	chr8	740401	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.75587	3.4788799999999998	4.20189	0.00397662	0.00293507	0.0322851	0.025146
chr1	153911274	153911374	1299844	0	-	0.37	(0.36,0.39]	chr1	130546	119	INTRON	INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.63521	3.47879	4.32237	0.00633242	0.00273222	0.0446708	0.0237575
chr8	116644806	116644905	10033903	0	-	0.313131	(0.29,0.33]	chr8	755319	28	UTR3	UTR3:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.67277	3.47878	4.28479	0.0255386	1.86411e-7	0.117089	9.59082e-6
chr14	100360553	100360607	14788773	0	-	0.574074	(0.53,0.59]	chr14	1158735	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	45	2	2.515	3.4787749999999997	4.44255	0.0292633	3.41603e-6	0.129773	1.12474e-4
chr7	2380383	2380474	8096361	0	+	0.516484	(0.49,0.53]	chr7	618929	3	UTR3	UTR3:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	3.41615	3.4786650000000003	3.54118	9.74162e-5	4.50577e-5	0.00193088	9.4221e-4
chr2	32029593	32029664	2590223	0	-	0.478873	(0.455,0.49]	chr2	233148	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.85172	3.478535	4.10535	0.010864	0.0064531	0.0643837	0.0450905
chr22	20584934	20585015	18299180	0	+	0.580247	(0.53,0.59]	chr22	1553504	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1:ENST00000461076.1:ENST00000436496.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	113	2	3.10323	3.47853	3.85383	5.99548e-6	3.15092e-6	1.97492e-4	1.05314e-4
chr5	43292847	43292910	6560188	0	-	0.507937	(0.49,0.53]	chr5	508343	1	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	3.05512	3.47853	3.90194	1.59562e-4	9.11374e-5	0.00263091	0.00182992
chr19	52617060	52617152	17620279	0	-	0.478261	(0.455,0.49]	chr19	1486814	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF83	ENSG00000167766.19	ENST00000600714.5:ENST00000601257.5:ENST00000301096.7:ENST00000536937.5:ENST00000597597.1:ENST00000594682.6:ENST00000545872.1:ENST00000541777.6:ENST00000595939.5:ENST00000596930.5:ENST00000597161.5:ENST00000598536.5:ENST00000601140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.08503	3.478445	4.87186	0.0158994	2.33781e-4	0.0856643	0.00385436
chr3	33142546	33142645	3397817	0	+	0.515152	(0.49,0.53]	chr3	295508	2	UTR3	UTR3:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	10	126	2	3.05347	3.478445	3.90342	1.85938e-5	1.77456e-8	5.04972e-4	1.27416e-6
chr12	53515840	53515940	13339507	0	-	0.48	(0.455,0.49]	chr12	1049176	39	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000551087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.69053	3.47823	4.26593	0.0182983	0.00372962	0.0925808	0.0302984
chr16	58532016	58532075	15966345	0	-	0.474576	(0.455,0.49]	chr16	1281093	2	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.69053	3.47823	4.26593	0.0182983	0.00372962	0.0925808	0.0302984
chr20	30286039	30286139	17937981	0	-	0.48	(0.455,0.49]	chr20	1518808	2	SS5_PROX	SS5_PROX:INTRON	LINC01597	ENSG00000205611.5	ENST00000380888.5	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	2.69053	3.47823	4.26593	0.0182983	0.00372962	0.0925808	0.0302984
chr7	892277	892347	8094115	0	+	0.485714	(0.455,0.49]	chr7	618538	1	CDS	CDS:UTR3:EXON_MRNA	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000483469.1:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.69053	3.47823	4.26593	0.0182983	0.00372962	0.0925808	0.0302984
chr17	81860371	81860426	16709682	0	-	0.690909	(0.59,1]	chr17	1377726	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000681031.1:ENST00000680846.1:ENST00000679366.1:ENST00000681020.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680847.1:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	1.79051	3.478135	5.16576	0.0396851	6.55716e-4	0.161349	0.0080931
chr19	49686092	49686167	17372131	0	+	0.546667	(0.53,0.59]	chr19	1443537	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRMT1	ENSG00000126457.22	ENST00000532489.5:ENST00000610806.4:ENST00000391851.8:ENST00000454376.7:ENST00000530361.5:ENST00000528126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.64837	3.478065	4.30776	0.0199467	0.00407289	0.0984041	0.0324137
chr20	32228262	32228358	17752863	0	+	0.5625	(0.53,0.59]	chr20	1498571	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.64837	3.478065	4.30776	0.0199467	0.00407289	0.0984041	0.0324137
chr3	14943278	14943377	4050029	0	-	0.535354	(0.53,0.59]	chr3	340108	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	1	20	2	2.64837	3.478065	4.30776	0.0199467	0.00407289	0.0984041	0.0324137
chr8	108230802	108230899	10002600	0	-	0.298969	(0.29,0.33]	chr8	754201	8	UTR3	UTR3:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000519517.5:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.71205	3.4779600000000004	4.24387	0.00263476	0.00120479	0.0239118	0.0129255
chr11	34097195	34097245	11905463	0	+	0.46	(0.455,0.49]	chr11	909578	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000531668.1:ENST00000533562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	60	2	3.135	3.4776499999999997	3.8203	1.04065e-4	6.9787e-6	0.002022	2.0562e-4
chr11	64804058	64804149	12419571	0	-	0.505495	(0.49,0.53]	chr11	963063	7	UTR3	UTR3:EXON_MRNA	MEN1	ENSG00000133895.18	ENST00000377316.6:ENST00000315422.9:ENST00000377313.6:ENST00000312049.11:ENST00000377326.7:ENST00000377321.5:ENST00000450708.7:ENST00000478548.3:ENST00000672304.1:ENST00000394376.6:ENST00000440873.6:ENST00000671939.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	1.75643	3.47763	5.19883	0.0293825	6.30063e-5	0.129773	0.00124286
chr9	128696207	128696303	10480942	0	+	0.3125	(0.29,0.33]	chr9	790686	17	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.13212	3.4774599999999998	3.8228	0.00551048	1.45428e-4	0.0414592	0.00244094
chr3	195780873	195780973	4661075	0	-	0.6	(0.59,1]	chr3	385270	22	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	38	2	2.32384	3.47745	4.63106	0.0157639	0.00537945	0.0851539	0.0406564
chr7	75418316	75418412	8858933	0	-	0.479167	(0.455,0.49]	chr7	676960	17	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	3.30384	3.477315	3.65079	0.00184955	3.61776e-4	0.0178046	0.00544764
chr2	74890841	74890941	1893427	0	+	0.62	(0.59,1]	chr2	179645	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	1.88006	3.4772950000000002	5.07453	0.0554008	0.00117617	0.191173	0.0132131
chr3	184325320	184325373	3949248	0	+	0.603774	(0.59,1]	chr3	332448	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000448284.1:ENST00000466311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	1.88006	3.4772950000000002	5.07453	0.0554008	0.00117617	0.191173	0.0132131
chr5	134708800	134708888	6230685	0	+	0.443182	(0.42,0.455]	chr5	485253	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.40664	3.4772800000000004	4.54792	0.00445101	9.66045e-4	0.0340751	0.0115185
chr12	885892	885988	12681429	0	+	0.458333	(0.455,0.49]	chr12	984118	14	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	3.13787	3.477055	3.81624	4.66183e-4	1.48205e-4	0.00616585	0.00269793
chr3	43549783	43549848	4145381	0	-	0.430769	(0.42,0.455]	chr3	346427	2	CDS	CDS:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.19674	3.47701	4.75728	0.0254904	5.3817e-4	0.117089	0.00686676
chr8	54047264	54047364	9833039	0	-	0.33	(0.29,0.33]	chr8	744007	10	UTR3	UTR3:EXON_MRNA	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.7441	3.47691	4.20972	0.00173745	3.5038e-7	0.0179204	1.63119e-5
chr1	54226630	54226730	1028121	0	-	0.37	(0.36,0.39]	chr1	106759	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.63115	3.47676	4.32237	0.0245975	0.00273222	0.114841	0.0237575
chr12	79806065	79806165	13434029	0	-	0.38	(0.36,0.39]	chr12	1057273	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000553081.5:ENST00000547330.5:ENST00000547131.1:ENST00000650220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.63115	3.47676	4.32237	0.0245975	0.00273222	0.114841	0.0237575
chr16	21983476	21983568	15587035	0	+	0.380435	(0.36,0.39]	chr16	1235489	4	UTR3	UTR3:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.63115	3.47676	4.32237	0.0245975	0.00273222	0.114841	0.0237575
chr3	195275740	195275839	4658463	0	-	0.373737	(0.36,0.39]	chr3	384848	11	UTR3	UTR3:EXON_MRNA	ACAP2	ENSG00000114331.15	ENST00000326793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.63115	3.47676	4.32237	0.0245975	0.00273222	0.114841	0.0237575
chr6	13659232	13659332	7605449	0	-	0.39	(0.36,0.39]	chr6	580071	4	SS3_PROX	SS3_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.63115	3.47676	4.32237	0.0245975	0.00273222	0.114841	0.0237575
chr2	65088938	65089004	2708077	0	-	0.393939	(0.39,0.42]	chr2	241352	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	3.19588	3.476705	3.75753	0.00321212	2.04026e-4	0.0280721	0.00320361
chr8	55751060	55751157	9834491	0	-	0.402062	(0.39,0.42]	chr8	744141	2	CDS	CDS:UTR3:EXON_MRNA	TMEM68	ENSG00000167904.15	ENST00000522470.1:ENST00000617782.4:ENST00000334667.6:ENST00000434581.7:ENST00000519784.5:ENST00000517576.5:ENST00000523073.5:ENST00000519780.5:ENST00000522090.5:ENST00000520061.5:ENST00000524121.1:ENST00000522030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.19588	3.476705	3.75753	0.00321212	2.04026e-4	0.0280721	0.00320361
chr1	230281924	230282023	749826	0	+	0.272727	[0,0.29]	chr1	76088	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	1.88543	3.476675	5.06792	0.0226603	6.88295e-5	0.10742	0.00133223
chr17	29286661	29286757	16491138	0	-	0.447917	(0.42,0.455]	chr17	1348893	8	CDS	CDS:EXON_MRNA:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	1.84101	3.476595	5.11218	0.0352234	6.01815e-5	0.142054	0.00130886
chr2	96283812	96283908	2790355	0	-	0.625	(0.59,1]	chr2	248730	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	106	2	3.05115	3.47659	3.90203	0.00103208	1.11836e-5	0.0121443	3.02696e-4
chr5	77810436	77810536	6651248	0	-	0.51	(0.49,0.53]	chr5	513882	342	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000522370.1	protein_coding	protein_coding	protein_coding	protein_coding	16	207	2	2.39355	3.47642	4.55929	1.32264e-4	7.04048e-12	0.00246181	1.27269e-9
chr16	2332480	2332564	15825975	0	-	0.571429	(0.53,0.59]	chr16	1262557	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABCA3:RP11-715J22.1	ENSG00000167972.14:ENSG00000243445.1	ENST00000382381.7:ENST00000301732.10:ENST00000563623.5:ENST00000468708.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	2	28	2	2.78899	3.47641	4.16383	0.00659193	0.00245784	0.0454205	0.0221765
chr21	43760622	43760721	18136204	0	+	0.565657	(0.53,0.59]	chr21	1538360	47	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.78899	3.47641	4.16383	0.00659193	0.00245784	0.0454205	0.0221765
chr10	74118967	74119067	11117657	0	+	0.64	(0.59,1]	chr10	846311	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	141	2	3.26465	3.476145	3.68764	4.42534e-5	2.78252e-5	0.00102453	6.37282e-4
chr1	231542535	231542611	752787	0	+	0.447368	(0.42,0.455]	chr1	76601	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSNAX:TSNAX-DISC1	ENSG00000116918.15:ENSG00000270106.6	ENST00000413309.3:ENST00000602634.5:ENST00000602956.5:ENST00000602962.5:ENST00000602885.5:ENST00000602567.1:ENST00000644515.1:ENST00000646525.1:ENST00000647072.1:ENST00000602825.5:ENST00000366639.9:ENST00000476913.1:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.15137	3.476005	4.80064	0.0123864	3.0479e-4	0.07101	0.00472028
chr1	244708738	244708836	804439	0	+	0.367347	(0.36,0.39]	chr1	80056	31	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.46497	3.47583	3.48669	0.00105709	6.40815e-5	0.0123035	0.00125657
chr1	6224580	6224680	842578	0	-	0.4	(0.39,0.42]	chr1	84936	35	UTR3	UTR3:EXON_MRNA	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5:ENST00000474756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.98752	3.47581	3.9641	2.91053e-4	6.346e-5	0.00462551	0.00124725
chr9	33624365	33624458	10236152	0	+	0.44086	(0.42,0.455]	chr9	769679	2	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	25	2	2.89192	3.47573	4.05954	0.00617886	0.00157686	0.0439741	0.015761
chr10	73742994	73743089	11574774	0	-	0.463158	(0.455,0.49]	chr10	881427	1	EXON_MRNA	EXON_MRNA	RP11-574K11.24	ENSG00000279088.1	ENST00000625041.1	TEC	TEC	TEC	TEC	2	27	2	3.13787	3.47531	3.81275	0.0138827	4.66183e-4	0.0760883	0.00616585
chrX	70963045	70963128	18729618	0	+	0.457831	(0.455,0.49]	chrX	1598079	2	EXON_PSEUDO	EXON_PSEUDO	RPS23P8	ENSG00000230629.2	ENST00000429775.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	61	2	2.63872	3.475245	4.31177	0.00510378	1.61752e-7	0.0390492	8.47204e-6
chr19	7963088	7963186	17447941	0	-	0.357143	(0.33,0.36]	chr19	1458189	16	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	3.4399	3.475135	3.51037	1.29517e-4	5.65559e-5	0.00242147	0.00114087
chr1	205620200	205620291	1461626	0	-	0.538462	(0.53,0.59]	chr1	147411	4	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	2.5766	3.474355	4.37211	8.34608e-4	5.43864e-6	0.00978328	1.81467e-4
chr12	113391241	113391338	13101767	0	+	0.484536	(0.455,0.49]	chr12	1022448	28	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	3.13227	3.4742550000000003	3.81624	1.48205e-4	2.90346e-5	0.00269793	6.60686e-4
chr14	23097658	23097758	14175745	0	+	0.48	(0.455,0.49]	chr14	1110552	1	CDS_START	CDS_START:CDS:EXON_MRNA	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.40664	3.47419	4.54174	0.0123662	0.00130137	0.0705839	0.0136936
chrX	134427999	134428098	18863558	0	+	0.252525	[0,0.29]	chrX	1607356	28	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.91289	3.473975	4.03506	9.07288e-4	4.20009e-5	0.0110102	8.92247e-4
chr22	23766148	23766211	18448271	0	-	0.603175	(0.59,1]	chr22	1573342	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CHCHD10	ENSG00000250479.9	ENST00000484558.3:ENST00000401675.7:ENST00000520222.1:ENST00000523865.1:ENST00000517886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	92	2	2.88332	3.4739449999999996	4.06457	5.9453e-4	9.48087e-5	0.00746384	0.00188744
chr1	160313989	160314057	1328942	0	-	0.485294	(0.455,0.49]	chr1	136082	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.58479	3.4739299999999997	4.36307	0.00218641	0.00200187	0.0208941	0.0189555
chr16	8858345	8858445	15844243	0	-	0.55	(0.53,0.59]	chr16	1265374	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1:ENST00000563815.5:ENST00000562843.5:ENST00000569398.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.7898	3.4739250000000004	4.15805	0.0128364	0.00680952	0.0719798	0.0468196
chr8	130112169	130112245	10090821	0	-	0.565789	(0.53,0.59]	chr8	758636	2	CDS	CDS:UTR3:EXON_MRNA	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000524124.5:ENST00000357668.2:ENST00000521075.5:ENST00000519483.5:ENST00000520189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.7898	3.4739250000000004	4.15805	0.0128364	0.00680952	0.0719798	0.0468196
chr18	35142791	35142888	16822742	0	+	0.546392	(0.53,0.59]	chr18	1387343	26	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.515	3.4738949999999997	4.43279	0.0292633	0.0026472	0.129773	0.0231864
chr19	9621154	9621234	17454986	0	-	0.5875	(0.53,0.59]	chr19	1459820	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF561	ENSG00000171469.11	ENST00000444802.5:ENST00000424629.5:ENST00000302851.8:ENST00000326044.9:ENST00000444611.5:ENST00000495503.5:ENST00000443819.5:ENST00000465974.5:ENST00000457965.5:ENST00000479943.5:ENST00000444519.5:ENST00000421525.5:ENST00000470932.5:ENST00000435550.5:ENST00000471053.5:ENST00000480167.5:ENST00000490893.5:ENST00000485150.1:ENST00000497409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.515	3.4738949999999997	4.43279	0.0292633	0.0026472	0.129773	0.0231864
chr2	27309779	27309876	2569763	0	-	0.556701	(0.53,0.59]	chr2	231327	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000620797.4:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5:ENST00000405076.5:ENST00000430991.5:ENST00000621183.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.515	3.4738949999999997	4.43279	0.0292633	0.0026472	0.129773	0.0231864
chr22	38739795	38739869	18511603	0	-	0.581081	(0.53,0.59]	chr22	1580321	2	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000477262.5:ENST00000469086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.515	3.4738949999999997	4.43279	0.0292633	0.0026472	0.129773	0.0231864
chr9	32573060	32573122	10629261	0	-	0.564516	(0.53,0.59]	chr9	803173	1	UTR5	UTR5:EXON_MRNA	NDUFB6	ENSG00000165264.11	ENST00000379847.8:ENST00000366466.5:ENST00000350021.2	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.515	3.4738949999999997	4.43279	0.0292633	0.0026472	0.129773	0.0231864
chr11	8685806	8685905	11790625	0	+	0.454545	(0.42,0.455]	chr11	902663	1	UTR3	UTR3:EXON_MRNA	RPL27A	ENSG00000166441.13	ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1:ENST00000530913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.91373	3.47378	4.03383	0.00892357	4.24324e-5	0.0567495	8.98949e-4
chr7	103311642	103311728	8441124	0	+	0.44186	(0.42,0.455]	chr7	645038	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000443722.5:ENST00000444457.5:ENST00000453466.1:ENST00000469560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.91373	3.47378	4.03383	0.00892357	4.24324e-5	0.0567495	8.98949e-4
chr11	7992927	7993024	11789472	0	+	0.587629	(0.53,0.59]	chr11	902510	1	CDS	CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.61377	3.47364	5.33351	0.0436338	4.35359e-5	0.170594	0.00091744700000000005
chr19	12643737	12643830	17469628	0	-	0.494624	(0.49,0.53]	chr19	1462695	6	EXON_PSEUDO	EXON_PSEUDO	RPL10P16	ENSG00000178464.6	ENST00000325000.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	108	2	2.68653	3.4735899999999997	4.26065	0.00122977	2.68877e-9	0.013593	2.50083e-7
chr1	52086955	52087054	192280	0	+	0.323232	(0.29,0.33]	chr1	24661	3	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000489308.6:ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.22839	3.47325	4.71811	0.00486332	3.17397e-7	0.0374757	1.50067e-5
chr20	31801170	31801261	17749991	0	+	0.428571	(0.42,0.455]	chr20	1498093	2	UTR3	UTR3:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	3.44537	3.473185	3.501	8.6897e-5	8.62752e-6	0.00177086	2.43605e-4
chr1	93889089	93889159	1175426	0	-	0.457143	(0.455,0.49]	chr1	115685	1	CDS	CDS:EXON_MRNA	GCLM	ENSG00000023909.10	ENST00000370238.8:ENST00000615724.1	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	3.1301	3.47317	3.81624	1.48205e-4	4.55691e-6	0.00269793	1.43292e-4
chr1	154257345	154257434	480010	0	+	0.573034	(0.53,0.59]	chr1	49694	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000489076.1:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	3.00086	3.4730049999999997	3.94515	2.19267e-4	3.18429e-6	0.00365543	1.06148e-4
chr2	97648008	97648108	1946483	0	+	0.63	(0.59,1]	chr2	184724	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	COX5B	ENSG00000135940.7	ENST00000258424.3:ENST00000464949.5:ENST00000491989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	92	2	2.91328	3.472955	4.03263	5.13816e-4	1.11254e-4	0.00665221	0.00213212
chr1	21846107	21846181	890871	0	-	0.662162	(0.59,1]	chr1	92338	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	5	133	2	3.08707	3.47253	3.85799	8.79989e-4	2.3137e-6	0.0107294	8.13963e-5
chr1	236981430	236981523	772166	0	+	0.526882	(0.49,0.53]	chr1	77965	2	EXON_PSEUDO	EXON_PSEUDO	RPL35P1	ENSG00000237991.3	ENST00000450819.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	69	2	2.68653	3.4724500000000003	4.25837	0.00122977	2.60666e-7	0.013593	1.26854e-5
chr17	28638007	28638094	16486665	0	-	0.505747	(0.49,0.53]	chr17	1348040	3	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.8671	3.4721450000000003	4.07719	0.0100489	0.0074411	0.0623334	0.0492519
chr22	40770833	40770933	18517364	0	-	0.51	(0.49,0.53]	chr22	1580849	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000402844.7:ENST00000447566.5:ENST00000420970.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.8671	3.4721450000000003	4.07719	0.0100489	0.0074411	0.0623334	0.0492519
chr8	38207596	38207681	9292299	0	+	0.458824	(0.455,0.49]	chr8	710681	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5:ENST00000521311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	3.2935	3.4721450000000003	3.65079	3.61776e-4	3.58585e-5	0.00544764	7.84153e-4
chr8	54051112	54051188	9833079	0	-	0.5	(0.49,0.53]	chr8	744015	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000520718.1:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.8671	3.4721450000000003	4.07719	0.0100489	0.0074411	0.0623334	0.0492519
chr8	70594505	70594590	9881490	0	-	0.352941	(0.33,0.36]	chr8	746943	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	93	2	3.18875	3.4720750000000002	3.7554	1.62733e-5	3.74756e-7	4.52905e-4	1.72807e-5
chr2	235597920	235598020	2444556	0	+	0.63	(0.59,1]	chr2	220921	730	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.77418	3.47197	4.16976	0.0160729	4.80088e-5	0.0860154	9.91058e-4
chr17	28592161	28592251	16486144	0	-	0.511111	(0.49,0.53]	chr17	1347856	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000531839.5:ENST00000578479.1:ENST00000580567.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.56183	3.471875	4.38192	0.0261296	0.00259709	0.118976	0.0229695
chr2	218738072	218738171	2391101	0	+	0.515152	(0.49,0.53]	chr2	215150	4	CDS	CDS:UTR5:EXON_MRNA	TTLL4	ENSG00000135912.11	ENST00000392102.6:ENST00000457313.5:ENST00000437755.1:ENST00000442769.5:ENST00000258398.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.56183	3.471875	4.38192	0.0261296	0.00259709	0.118976	0.0229695
chr3	37040185	37040239	3411023	0	+	0.518519	(0.49,0.53]	chr3	296332	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.56183	3.471875	4.38192	0.0261296	0.00259709	0.118976	0.0229695
chr3	150459835	150459935	3807501	0	+	0.25	[0,0.29]	chr3	324963	13	UTR3	UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000466814.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.28583	3.471865	3.6579	0.0197988	0.00346525	0.0983378	0.0293796
chr6	136557490	136557579	7984756	0	-	0.269663	[0,0.29]	chr6	610503	6	UTR3	UTR3:EXON_MRNA	MAP3K5	ENSG00000197442.10	ENST00000359015.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.28583	3.471865	3.6579	0.0197988	0.00346525	0.0983378	0.0293796
chr22	11249883	11249959	18418837	0	-	0.447368	(0.42,0.455]	chr22	1568758	2	EXON_SMALL	EXON_SMALL	5_8S_rRNA	ENSG00000276871.1	ENST00000612732.1	rRNA	rRNA	rRNA	rRNA	8	103	2	3.23839	3.471795	3.7052	2.92986e-4	3.5345e-8	0.00464297	2.29291e-6
chr6	42866808	42866905	7153746	0	+	0.340206	(0.33,0.36]	chr6	552174	15	UTR3	UTR3:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.97842	3.471645	4.96487	0.0469469	9.26851e-5	0.171977	0.00185187
chr1	109269999	109270066	398359	0	+	0.537313	(0.53,0.59]	chr1	38696	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CELSR2	ENSG00000143126.8	ENST00000271332.4:ENST00000489018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.50447	3.4715499999999997	4.43863	0.0301162	0.00254763	0.130016	0.0233955
chr11	6600145	6600245	12249776	0	-	0.55	(0.53,0.59]	chr11	946783	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RRP8	ENSG00000132275.11	ENST00000254605.11:ENST00000534343.1:ENST00000533907.1:ENST00000526352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.50447	3.4715499999999997	4.43863	0.0301162	0.00254763	0.130016	0.0233955
chr12	123407547	123407603	13126863	0	+	0.553571	(0.53,0.59]	chr12	1025723	2	CDS	CDS:UTR3:EXON_MRNA	KMT5A	ENSG00000183955.13	ENST00000330479.8:ENST00000402868.8:ENST00000437519.5:ENST00000437502.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.50447	3.4715499999999997	4.43863	0.0301162	0.00254763	0.130016	0.0233955
chr15	64682685	64682785	14978100	0	+	0.55	(0.53,0.59]	chr15	1177327	11	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.50447	3.4715499999999997	4.43863	0.0301162	0.00254763	0.130016	0.0233955
chr16	29485349	29485443	15909906	0	-	0.585106	(0.53,0.59]	chr16	1274266	8	CDS	CDS:EXON_MRNA:INTRON	RP11-345J4.11:NPIPB12	ENSG00000288632.1:ENSG00000169203.16	ENST00000675579.1:ENST00000458643.3:ENST00000550665.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	20	2	2.50447	3.4715499999999997	4.43863	0.0301162	0.00254763	0.130016	0.0233955
chr16	67946170	67946238	15991145	0	-	0.588235	(0.53,0.59]	chr16	1283557	1	CDS	CDS:UTR3:EXON_MRNA	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000576616.5:ENST00000570802.5:ENST00000537830.6:ENST00000575857.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.50447	3.4715499999999997	4.43863	0.0301162	0.00254763	0.130016	0.0233955
chr1	114410183	114410249	1237110	0	-	0.575758	(0.53,0.59]	chr1	120990	1	CDS	CDS:EXON_MRNA	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.77921	3.47152	4.16383	0.0132865	0.00659193	0.0740932	0.0454205
chr1	161505429	161505467	500391	0	+	0.552632	(0.53,0.59]	chr1	54208	1	UTR5	UTR5:EXON_MRNA	FCGR2A	ENSG00000143226.15	ENST00000367972.8:ENST00000467654.1:ENST00000473080.1:ENST00000271450.12:ENST00000483665.6:ENST00000536731.5:ENST00000497474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.77921	3.47152	4.16383	0.0132865	0.00659193	0.0740932	0.0454205
chr16	30117136	30117211	15913064	0	-	0.56	(0.53,0.59]	chr16	1275014	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000461737.5:ENST00000395200.5:ENST00000395202.5:ENST00000478356.5:ENST00000395199.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.77921	3.47152	4.16383	0.0132865	0.00659193	0.0740932	0.0454205
chr2	47403128	47403191	1784504	0	+	0.539683	(0.53,0.59]	chr2	172440	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.77921	3.47152	4.16383	0.0132865	0.00659193	0.0740932	0.0454205
chr7	156683977	156684077	9145638	0	-	0.55	(0.53,0.59]	chr7	699160	63	UTR3	UTR3:EXON_MRNA	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	2.77921	3.47152	4.16383	0.0132865	0.00659193	0.0740932	0.0454205
chrX	154533575	154533652	19278704	0	-	0.571429	(0.53,0.59]	chrX	1638552	1	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000489497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.77921	3.47152	4.16383	0.0132865	0.00659193	0.0740932	0.0454205
chr16	58162095	58162193	15965646	0	-	0.55102	(0.53,0.59]	chr16	1280935	27	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	33	2	2.504	3.4713149999999997	4.43863	0.00279409	0.00254763	0.0241702	0.0233955
chr3	128814601	128814699	3729282	0	+	0.479592	(0.455,0.49]	chr3	318662	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000675497.1:ENST00000674589.1:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	1.8708	3.47126	5.07172	0.0324007	8.3067e-5	0.134751	0.00171126
chr11	60069624	60069675	11961706	0	+	0.431373	(0.42,0.455]	chr11	915689	2	CDS	CDS:UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	1.86513	3.4712449999999997	5.07736	0.0357107	2.03293e-8	0.147298	1.42506e-6
chr16	28982856	28982922	15621978	0	+	0.515152	(0.49,0.53]	chr16	1238813	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:SPNS1:RP11-264B17.3	ENSG00000288630.1:ENSG00000169682.18:ENSG00000261067.7	ENST00000675058.1:ENST00000565975.5:ENST00000311008.16:ENST00000323081.12:ENST00000334536.12:ENST00000569969.5:ENST00000352260.11:ENST00000566059.5:ENST00000564476.1:ENST00000568829.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	33	2	3.11892	3.4711100000000004	3.8233	0.00398244	1.44192e-4	0.0322851	0.00242438
chr2	171517626	171517716	3014285	0	-	0.577778	(0.53,0.59]	chr2	267007	5	EXON_PSEUDO	EXON_PSEUDO	RPS15P4	ENSG00000233762.3	ENST00000433675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	3.11779	3.47093	3.82407	0.0179666	5.11883e-4	0.0918323	0.00664583
chr16	30224017	30224116	15913240	0	-	0.565657	(0.53,0.59]	chr16	1275086	10	CDS	CDS:EXON_MRNA:INTRON	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.1234	3.470895	3.81839	0.0184435	0.00390623	0.0945306	0.0322851
chr8	60742929	60743013	9354229	0	+	0.571429	(0.53,0.59]	chr8	715344	2	CDS	CDS:UTR3:EXON_MRNA	CHD7	ENSG00000171316.12	ENST00000423902.7:ENST00000524602.5:ENST00000525508.1:ENST00000527825.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	21	2	3.1234	3.470895	3.81839	0.0184435	0.00390623	0.0945306	0.0322851
chr12	101714163	101714237	13048838	0	+	0.486486	(0.455,0.49]	chr12	1016501	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000546490.1:ENST00000552215.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.18128	3.47088	4.76048	0.0111696	3.99985e-4	0.0665375	0.00588767
chrY	5793386	5793474	19342315	0	-	0.465909	(0.455,0.49]	chrY	1645392	2	EXON_PSEUDO	EXON_PSEUDO	RPL26P37	ENSG00000235175.1	ENST00000411983.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	27	2	2.18128	3.47088	4.76048	0.0111696	3.99985e-4	0.0665375	0.00588767
chr14	67692478	67692578	14683504	0	-	0.56	(0.53,0.59]	chr14	1149651	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1:ENST00000556692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	67	2	2.21316	3.4706900000000003	4.72822	0.00482336	4.40858e-7	0.0371856	1.99026e-5
chr22	19177119	19177204	18431171	0	-	0.541176	(0.53,0.59]	chr22	1570502	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5:ENST00000461267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	56	2	2.84458	3.47067	4.09676	5.21436e-4	3.14727e-5	0.00674101	7.72298e-4
chr17	68525832	68525912	16337362	0	+	0.475	(0.455,0.49]	chr17	1325369	2	CDS	CDS:UTR3:EXON_MRNA	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000585608.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000585981.5:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5:ENST00000586541.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	1.96875	3.470665	4.97258	0.0480352	1.84876e-4	0.180552	0.00296795
chrX	47212989	47213085	18686903	0	+	0.5625	(0.53,0.59]	chrX	1593269	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	2.90632	3.470425	4.03453	3.72925e-4	4.6e-5	0.00559101	9.56296e-4
chr6	151099690	151099771	7489282	0	+	0.518519	(0.49,0.53]	chr6	572335	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	MTHFD1L:RPL32P16	ENSG00000120254.16:ENSG00000219747.1	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000405720.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	8	96	2	2.85963	3.4703	4.08097	7.04784e-5	8.57989e-8	0.00135879	5.46541e-6
chr1	171557510	171557600	537266	0	+	0.555556	(0.53,0.59]	chr1	57662	4	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	11	136	2	2.87446	3.470225	4.06599	1.01585e-5	1.24942e-7	3.05477e-4	6.76445e-6
chr17	28347225	28347324	16484300	0	-	0.454545	(0.42,0.455]	chr17	1347487	7	UTR3	UTR3:EXON_MRNA	POLDIP2	ENSG00000004142.12	ENST00000540200.6	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.31161	3.470085	3.62856	0.00186138	4.02604e-4	0.018635	0.00549837
chrX	86160960	86161060	19141874	0	-	0.52	(0.49,0.53]	chrX	1627919	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P29	ENSG00000215093.3	ENST00000416082.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	3.25514	3.470065	3.68499	0.00227467	2.9991e-4	0.0209546	0.00472028
chr3	14445716	14445783	3320421	0	+	0.447761	(0.42,0.455]	chr3	292220	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000622176.4:ENST00000615188.1:ENST00000452775.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	39	2	2.90616	3.469995	4.03383	0.00162359	4.24324e-5	0.0169915	8.98949e-4
chr12	10606174	10606274	13203165	0	-	0.32	(0.29,0.33]	chr12	1035386	21	UTR3	UTR3:EXON_MRNA	MAGOHB	ENSG00000111196.10	ENST00000320756.7:ENST00000537852.5:ENST00000544850.5:ENST00000539554.5:ENST00000398874.8:ENST00000540074.5:ENST00000545236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.31653	3.469825	3.62312	0.0222826	0.00261621	0.104593	0.0238929
chr3	23920393	23920493	3358571	0	+	0.41	(0.39,0.42]	chr3	294139	10	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	14	144	2	3.46878	3.469715	3.47065	7.85944e-7	3.0608e-8	3.61591e-5	2.03441e-6
chr11	85958749	85958848	12525717	0	-	0.343434	(0.33,0.36]	chr11	972155	17	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	280	2	3.45123	3.4696949999999998	3.48816	1.29349e-9	7.50254e-10	1.42723e-7	8.12384e-8
chr14	67364937	67365008	14360368	0	+	0.408451	(0.39,0.42]	chr14	1122432	2	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000556724.1:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.30055	3.46969	4.63883	0.0070645	5.68159e-4	0.0477419	0.0077844
chr11	72006034	72006110	12447059	0	-	0.697368	(0.59,1]	chr11	967242	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000541584.5:ENST00000540626.5:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000541262.5:ENST00000545721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.39747	3.46965	4.54183	0.0430221	0.0070583	0.161091	0.0478044
chr13	26254192	26254282	13654697	0	+	0.711111	(0.59,1]	chr13	1076208	2	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.39747	3.46965	4.54183	0.0430221	0.0070583	0.161091	0.0478044
chr19	55387849	55387929	17396176	0	+	0.6125	(0.59,1]	chr19	1448679	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	RPL28:MIR6805	ENSG00000108107.15:ENSG00000284029.1	ENST00000344063.7:ENST00000558815.5:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000615055.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	28	2	2.39747	3.46965	4.54183	0.0430221	0.0070583	0.161091	0.0478044
chr11	34100448	34100546	11905499	0	+	0.346939	(0.33,0.36]	chr11	909587	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	2.97592	3.4691650000000003	3.96241	4.1482e-4	2.45889e-6	0.00607555	8.56405e-5
chr11	31632216	31632310	11893171	0	+	0.37234	(0.36,0.39]	chr11	908614	1	CDS	CDS:UTR3:EXON_MRNA	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000638482.1:ENST00000640533.1:ENST00000639570.1:ENST00000640081.1:ENST00000640342.1:ENST00000474374.5:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000640921.1:ENST00000638376.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.20444	3.46895	4.73346	0.0237257	3.2963e-4	0.109365	0.00504024
chr10	79314258	79314356	11148591	0	+	0.642857	(0.59,1]	chr10	847412	1	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.03921	3.46889	4.89857	0.0371471	0.00182139	0.151849	0.0176016
chr4	52713569	52713669	4829920	0	+	0.48	(0.455,0.49]	chr4	398211	3	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR:LINC01618	ENSG00000226950.8:ENSG00000250302.3	ENST00000411630.7:ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2:ENST00000675191.1:ENST00000653147.1:ENST00000623036.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	2.52734	3.4688749999999997	4.41041	0.00792433	0.00218771	0.0523592	0.0202707
chr7	65955403	65955502	8301911	0	+	0.484848	(0.455,0.49]	chr7	632922	11	UTR3	UTR3:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.52734	3.4688749999999997	4.41041	0.00792433	0.00218771	0.0523592	0.0202707
chr4	92701944	92702044	4970817	0	+	0.41	(0.39,0.42]	chr4	407036	1113	INTRON	INTRON	GRID2	ENSG00000152208.13	ENST00000282020.9:ENST00000505687.5:ENST00000510992.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	103	2	2.36783	3.4688550000000005	4.56988	9.23937e-4	9.34031e-10	0.0111585	9.89574e-8
chr12	56161415	56161501	12898556	0	+	0.5	(0.49,0.53]	chr12	1004368	1	UTR3	UTR3:EXON_MRNA:INTRON	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000549017.5:ENST00000549566.5:ENST00000550697.6:ENST00000547649.5:ENST00000547408.5:ENST00000548400.5:ENST00000546845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	259	2	2.76643	3.4688100000000004	4.17119	6.76509e-7	3.42364e-10	2.86887e-5	4.4947e-8
chr21	43695779	43695879	18135752	0	+	0.33	(0.29,0.33]	chr21	1538248	25	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.24226	3.4687799999999998	4.6953	0.0306054	4.88271e-4	0.130226	0.00638318
chr16	68191225	68191316	15714917	0	+	0.450549	(0.42,0.455]	chr16	1251034	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	122	2	3.13462	3.4686500000000002	3.80268	4.44797e-6	4.32019e-8	1.54689e-4	2.71087e-6
chr11	57332151	57332215	12394103	0	-	0.546875	(0.53,0.59]	chr11	958538	1	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.11275	3.46841	3.82407	0.0179666	0.00407571	0.0918323	0.032143
chr11	67398721	67398788	12427593	0	-	0.552239	(0.53,0.59]	chr11	965291	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	21	2	3.11275	3.46841	3.82407	0.0179666	0.00407571	0.0918323	0.032143
chr17	28688154	28688218	16177087	0	+	0.5625	(0.53,0.59]	chr17	1305415	2	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000581908.1:ENST00000585230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	3.11275	3.46841	3.82407	0.0179666	0.00407571	0.0918323	0.032143
chrX	123961705	123961780	18851151	0	+	0.586667	(0.53,0.59]	chrX	1606120	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG2	ENSG00000101972.19	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	3.11275	3.46841	3.82407	0.0179666	0.00407571	0.0918323	0.032143
chr6	43782021	43782087	7159900	0	+	0.5	(0.49,0.53]	chr6	553449	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VEGFA	ENSG00000112715.25	ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000425836.7:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1:ENST00000497139.5:ENST00000493786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.8671	3.46826	4.06942	0.0100489	3.44689e-5	0.0623334	7.57659e-4
chr8	31058447	31058543	9256117	0	+	0.375	(0.36,0.39]	chr8	709199	1	CDS_START	CDS_START:CDS:EXON_MRNA	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.18642	3.468245	3.75007	0.00359152	2.12157e-4	0.0302391	0.00329275
chr10	95611348	95611442	11632917	0	-	0.5	(0.49,0.53]	chr10	885996	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000485428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	39	2	2.56183	3.4680299999999997	4.37423	0.0261296	4.77238e-6	0.118976	1.49327e-4
chr6	158785399	158785491	8044098	0	-	0.521739	(0.49,0.53]	chr6	614951	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.38935	3.4680150000000003	4.54668	0.00488689	1.40979e-6	0.0376157	5.33111e-5
chr2	96298890	96298967	2790536	0	-	0.480519	(0.455,0.49]	chr2	248835	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.3605	3.4678750000000003	3.57525	0.00147278	5.24878e-4	0.0157578	0.00677371
chr1	186333212	186333303	1411924	0	-	0.428571	(0.42,0.455]	chr1	142840	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	2.71369	3.4677100000000003	4.22173	9.10309e-5	3.16136e-7	0.0016818	1.68021e-5
chr11	27889435	27889535	12317013	0	-	0.44	(0.42,0.455]	chr11	952778	7	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	69	2	2.99666	3.4676799999999997	3.9387	0.00104775	2.97671e-7	0.0123035	1.42244e-5
chr12	57820025	57820124	13358199	0	-	0.414141	(0.39,0.42]	chr12	1053218	2	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.99507	3.467515	3.93996	0.00841622	0.00637824	0.054565	0.0449937
chr19	10391132	10391215	17459885	0	-	0.39759	(0.39,0.42]	chr19	1460930	1	UTR3	UTR3:EXON_MRNA	CDC37	ENSG00000105401.9	ENST00000222005.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.99507	3.467515	3.93996	0.00841622	0.00637824	0.054565	0.0449937
chr5	10433684	10433782	5875534	0	+	0.408163	(0.39,0.42]	chr5	462061	1	UTR3	UTR3:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	3.27036	3.467515	3.66467	3.60066e-4	1.09752e-5	0.00544157	2.97332e-4
chr6	163418473	163418572	7539292	0	+	0.414141	(0.39,0.42]	chr6	575587	16	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.99507	3.467515	3.93996	0.00841622	0.00637824	0.054565	0.0449937
chr7	74196740	74196835	8334078	0	+	0.452632	(0.42,0.455]	chr7	634971	16	UTR3	UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	3.20518	3.46737	3.72956	6.88593e-5	3.07949e-7	0.00146004	1.46234e-5
chr1	247876784	247876883	816522	0	+	0.262626	[0,0.29]	chr1	80729	4	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.82443	3.467365	4.1103	0.0180803	0.00493104	0.0920398	0.0366648
chr10	117282967	117283067	11711101	0	-	0.23	[0,0.29]	chr10	893463	58	UTR3	UTR3:EXON_MRNA	PDZD8	ENSG00000165650.12	ENST00000334464.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.82443	3.467365	4.1103	0.0180803	0.00493104	0.0920398	0.0366648
chr18	57602420	57602486	17137473	0	-	0.469697	(0.455,0.49]	chr18	1407143	2	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.9967	3.46732	3.93794	0.00650423	7.43966e-5	0.0454205	0.00142165
chr17	58352135	58352231	16612672	0	-	0.552083	(0.53,0.59]	chr17	1364759	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SUPT4H1:RP5-1171I10.8	ENSG00000213246.7:ENSG00000285897.1	ENST00000581166.5:ENST00000225504.8:ENST00000648873.1:ENST00000577396.5:ENST00000580947.1:ENST00000579289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	2.27113	3.4673049999999996	4.66348	0.0178853	0.00107799	0.0918323	0.0118238
chr11	66644032	66644132	11991537	0	+	0.59	(0.53,0.59]	chr11	922206	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	2.62668	3.46722	4.30776	0.00407289	0.00157636	0.0324137	0.015761
chr20	58997602	58997677	18026100	0	-	0.546667	(0.53,0.59]	chr20	1527935	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000681457.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000681366.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000680156.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000681029.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	42	2	2.65894	3.4671000000000003	4.27526	0.0193255	1.03921e-5	0.0943643	2.85526e-4
chr17	81270917	81270970	16707069	0	-	0.528302	(0.49,0.53]	chr17	1377187	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9:ENST00000546352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	1.99044	3.467035	4.94363	0.0435903	2.3417e-4	0.170594	0.00355764
chr4	73091434	73091531	5466125	0	-	0.515464	(0.49,0.53]	chr4	437754	9	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	3.12407	3.4670300000000003	3.80999	7.46851e-6	4.85757e-6	2.37258e-4	1.51731e-4
chr10	84148783	84148838	11164584	0	+	0.490909	(0.49,0.53]	chr10	848145	2	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	3.29825	3.467025	3.6358	0.00019429700000000001	2.45857e-5	0.00332542	5.74553e-4
chr8	73291197	73291252	9888173	0	-	0.4	(0.39,0.42]	chr8	747612	2	CDS	CDS:EXON_MRNA	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000466821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	47	2	3.3111	3.466905	3.62271	2.11919e-4	2.66379e-5	0.00357806	6.1526e-4
chr9	137243263	137243359	10515407	0	+	0.5625	(0.53,0.59]	chr9	797249	9	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	129	2	3.19677	3.4669049999999997	3.73704	1.94039e-5	9.75063e-8	5.22287e-4	5.46214e-6
chr3	96350444	96350543	3612092	0	+	0.585859	(0.53,0.59]	chr3	310547	10	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	29	2	2.92962	3.466775	4.00393	0.0108084	0.0012954	0.064368	0.0136936
chr19	7963482	7963582	17447945	0	-	0.5	(0.49,0.53]	chr19	1458190	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.38683	3.466755	4.54668	0.012654	1.40979e-6	0.0718207	5.33111e-5
chr11	64320726	64320792	11980509	0	+	0.575758	(0.53,0.59]	chr11	919243	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	3.39416	3.46673	3.5393	0.00126006	6.46017e-4	0.013837	0.00799743
chr7	105112011	105112105	8449877	0	+	0.457447	(0.455,0.49]	chr7	645366	3	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	3.33595	3.46673	3.59751	2.70224e-5	4.2755e-6	6.22285e-4	1.49387e-4
chr16	1699682	1699779	15488677	0	+	0.43299	(0.42,0.455]	chr16	1226188	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	2.32442	3.46669	4.60896	0.00182252	8.72604e-7	0.0183913	3.55816e-5
chr9	121180406	121180505	10835879	0	-	0.424242	(0.42,0.455]	chr9	820919	24	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	2.2473	3.466615	4.68593	0.0048106	4.87807e-7	0.0371037	2.16171e-5
chr5	38941804	38941904	6544696	0	-	0.42	(0.39,0.42]	chr5	507042	40	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.784	3.46643	4.14886	0.00415881	0.00261393	0.0325842	0.0230705
chr9	128696303	128696400	10480943	0	+	0.350515	(0.33,0.36]	chr9	790686	18	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.53443	3.4664	4.39837	0.00171856	3.65455e-6	0.0177536	1.19215e-4
chr1	25900415	25900515	905269	0	-	0.54	(0.53,0.59]	chr1	94145	4	UTR3	UTR3:EXON_MRNA:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	3.1234	3.4657299999999998	3.80806	0.00390623	1.65022e-4	0.0322851	0.00269147
chr20	46352138	46352226	17989994	0	-	0.556818	(0.53,0.59]	chr20	1524518	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10:ENST00000243896.6:ENST00000372227.5:ENST00000493599.1:ENST00000317734.12:ENST00000480329.5:ENST00000487729.5:ENST00000484318.5:ENST00000481809.1:ENST00000420518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	3.1234	3.4657299999999998	3.80806	0.00390623	1.65022e-4	0.0322851	0.00269147
chr6	33290325	33290387	7121650	0	+	0.548387	(0.53,0.59]	chr6	547532	1	CDS	CDS:EXON_MRNA:PRIMIRNA	PFDN6:MIR6834	ENSG00000204220.12:ENSG00000284064.1	ENST00000395131.5:ENST00000395134.3:ENST00000374607.5:ENST00000374610.6:ENST00000374606.10:ENST00000491382.1:ENST00000622807.1:ENST00000463584.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	5	73	2	3.07752	3.465675	3.85383	1.40512e-4	5.99548e-6	0.00237235	1.97492e-4
chr2	15618180	15618270	1650874	0	+	0.377778	(0.36,0.39]	chr2	162950	1	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	3.10506	3.465595	3.82613	7.38785e-4	1.39565e-4	0.00924579	0.0023599
chr16	70530830	70530917	15729730	0	+	0.356322	(0.33,0.36]	chr16	1252897	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	2.88494	3.465555	4.04617	6.89291e-4	1.29334e-6	0.00876781	4.97655e-5
chr15	78896982	78897067	15042654	0	+	0.482353	(0.455,0.49]	chr15	1183474	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	70	2	3.45626	3.464945	3.47363	1.18079e-5	1.0662e-5	3.17854e-4	3.14877e-4
chr6	33203713	33203813	7121305	0	+	0.57	(0.53,0.59]	chr6	547401	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC39A7	ENSG00000112473.18	ENST00000374675.7:ENST00000374677.8:ENST00000463972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	93	2	2.63323	3.464805	4.29638	2.91603e-4	2.26633e-7	0.00463214	1.12729e-5
chr7	73206622	73206717	8331588	0	+	0.315789	(0.29,0.33]	chr7	634360	6	EXON_LNCRNA	EXON_LNCRNA	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	47	2	3.31614	3.4646850000000002	3.61323	3.2999e-4	3.91773e-6	0.00504024	1.26663e-4
chr1	47287550	47287605	986066	0	-	0.309091	(0.29,0.33]	chr1	104135	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000447475.7:ENST00000436811.2:ENST00000682165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr1	148984404	148984503	460045	0	+	0.313131	(0.29,0.33]	chr1	45840	31	UTR3	UTR3:EXON_MRNA:INTRON	PDE4DIP	ENSG00000178104.19	ENST00000524974.5:ENST00000585156.5:ENST00000618462.4:ENST00000369356.8:ENST00000369354.7:ENST00000369349.7:ENST00000369351.7:ENST00000313431.13:ENST00000529945.2:ENST00000467859.3:ENST00000530062.5:ENST00000491426.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr14	101926921	101927018	14494903	0	+	0.329897	(0.29,0.33]	chr14	1132932	18	UTR3	UTR3:EXON_MRNA	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000334743.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr17	42314775	42314872	16547429	0	-	0.329897	(0.29,0.33]	chr17	1357253	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr20	62922057	62922156	18031434	0	-	0.292929	(0.29,0.33]	chr20	1529231	73	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr4	465787	465887	5274826	0	-	0.32	(0.29,0.33]	chr4	424165	210	INTRON	INTRON	ABCA11P:ZNF721	ENSG00000251595.7:ENSG00000182903.16	ENST00000451020.6:ENST00000514396.5:ENST00000507854.1:ENST00000515578.5:ENST00000506646.5:ENST00000507078.1:ENST00000511833.3:ENST00000338977.5:ENST00000505900.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr4	2515759	2515857	4683891	0	+	0.326531	(0.29,0.33]	chr4	388476	21	UTR3	UTR3:EXON_MRNA:INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000314289.13:ENST00000511600.5:ENST00000508235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr7	128310398	128310498	9058613	0	-	0.31	(0.29,0.33]	chr7	691245	129	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.67277	3.464685	4.2566	0.0255386	0.00303129	0.117089	0.0257942
chr7	97852358	97852413	8940607	0	-	0.454545	(0.42,0.455]	chr7	682229	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	9	73	2	2.42512	3.46462	4.50412	2.18002e-4	1.67683e-6	0.00337237	6.81279e-5
chr18	8638262	8638355	16749379	0	+	0.376344	(0.36,0.39]	chr18	1381172	1	UTR3	UTR3:EXON_MRNA	RAB12	ENSG00000206418.5	ENST00000649141.2	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.76778	3.464605	4.16143	0.00486719	0.00365703	0.0366328	0.0307238
chr14	90404815	90404914	14455580	0	+	0.383838	(0.36,0.39]	chr14	1128586	2	UTR3	UTR3:EXON_MRNA	CALM1	ENSG00000198668.13	ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553630.1:ENST00000553542.5:ENST00000544280.6:ENST00000663135.1:ENST00000553422.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	62	2	2.08367	3.4645850000000005	4.8455	0.00219806	1.22274e-7	0.0209987	6.6551e-6
chr1	36287089	36287179	141544	0	+	0.577778	(0.53,0.59]	chr1	17556	9	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.2596	3.46448	4.66936	0.0185443	0.00103174	0.0948733	0.0121443
chr14	65102428	65102517	14676108	0	-	0.561798	(0.53,0.59]	chr14	1149136	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAX	ENSG00000125952.20	ENST00000618858.4:ENST00000358402.8:ENST00000394606.6:ENST00000358664.9:ENST00000555932.5:ENST00000284165.10:ENST00000557277.5:ENST00000556892.5:ENST00000556979.5:ENST00000555667.5:ENST00000557746.5:ENST00000556443.5:ENST00000246163.2:ENST00000556702.1:ENST00000554709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.2596	3.46448	4.66936	0.0185443	0.00103174	0.0948733	0.0121443
chr15	72585548	72585646	15018754	0	+	0.397959	(0.39,0.42]	chr15	1180122	24	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.59744	3.4643699999999997	4.3313	0.00572981	0.00209984	0.0417368	0.0204266
chr20	35653640	35653739	17954995	0	-	0.414141	(0.39,0.42]	chr20	1521109	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.59744	3.4643699999999997	4.3313	0.00572981	0.00209984	0.0417368	0.0204266
chr6	43770310	43770409	7159773	0	+	0.393939	(0.39,0.42]	chr6	553424	2	UTR5	UTR5:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000476772.5:ENST00000372067.8:ENST00000672860.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.59744	3.4643699999999997	4.3313	0.00572981	0.00209984	0.0417368	0.0204266
chr18	211579	211677	16716208	0	+	0.408163	(0.39,0.42]	chr18	1379161	4	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8:ENST00000578942.5:ENST00000383589.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	144	2	3.09567	3.46434	3.83301	9.03031e-7	8.28179e-9	3.66893e-5	7.22574e-7
chr16	58709491	58709567	15967641	0	-	0.526316	(0.49,0.53]	chr16	1281411	2	CDS	CDS:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000494627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.64528	3.4642999999999997	4.28332	0.0202736	0.00338762	0.0984041	0.0288632
chr16	67438187	67438272	15988522	0	-	0.529412	(0.49,0.53]	chr16	1283071	3	UTR3	UTR3:EXON_MRNA	ATP6V0D1	ENSG00000159720.12	ENST00000568620.5:ENST00000290949.8:ENST00000602876.5:ENST00000563305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.64528	3.4642999999999997	4.28332	0.0202736	0.00338762	0.0984041	0.0288632
chr18	35142500	35142597	16822739	0	+	0.505155	(0.49,0.53]	chr18	1387343	23	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.64528	3.4642999999999997	4.28332	0.0202736	0.00338762	0.0984041	0.0288632
chr22	38984152	38984231	18368305	0	+	0.518987	(0.49,0.53]	chr22	1562797	2	CDS	CDS:EXON_MRNA:INTRON	APOBEC3A:APOBEC3B	ENSG00000128383.13:ENSG00000179750.16	ENST00000618553.1:ENST00000333467.4:ENST00000407298.7:ENST00000402182.7:ENST00000335760.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.64528	3.4642999999999997	4.28332	0.0202736	0.00338762	0.0984041	0.0288632
chr10	75231172	75231264	11126615	0	+	0.358696	(0.33,0.36]	chr10	846677	3	UTR3	UTR3:EXON_MRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000332211.10:ENST00000313132.8:ENST00000460044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	85	2	2.79176	3.464255	4.13675	4.19475e-4	6.81794e-9	0.00611538	5.56281e-7
chr17	59682906	59682960	16295473	0	+	0.5	(0.49,0.53]	chr17	1321734	1	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	3.41615	3.4642150000000003	3.51228	9.74162e-5	7.99738e-6	0.00193088	2.28719e-4
chr1	149884837	149884931	1287091	0	-	0.425532	(0.42,0.455]	chr1	127851	5	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	3.35959	3.46405	3.56851	3.9883e-5	7.27746e-7	9.51945e-4	3.04215e-5
chr2	27239041	27239136	1691737	0	+	0.610526	(0.59,1]	chr2	165770	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000456311.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.38614	3.463985	4.54183	0.0128707	0.0070583	0.0725185	0.0478044
chr5	37363887	37363984	6540705	0	-	0.43299	(0.42,0.455]	chr5	506682	1	CDS	CDS:UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1:ENST00000507675.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	1.63927	3.463545	5.28782	0.0455517	3.65299e-5	0.175554	7.95843e-4
chr1	45013135	45013215	174327	0	+	0.575	(0.53,0.59]	chr1	22538	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000650713.1:ENST00000651476.1:ENST00000463092.5:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000461035.5:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5:ENST00000490385.5:ENST00000460906.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000496439.1:ENST00000652514.1:ENST00000473012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	100	2	2.98531	3.46353	3.94175	7.82534e-5	3.37749e-7	0.00148756	1.77431e-5
chr11	107791467	107791563	12584846	0	-	0.541667	(0.53,0.59]	chr11	975961	6	UTR3	UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	3.2746	3.463505	3.65241	1.13758e-5	3.10117e-6	3.07542e-4	1.14992e-4
chr2	11445711	11445807	2513429	0	-	0.322917	(0.29,0.33]	chr2	227014	15	UTR3	UTR3:EXON_MRNA	E2F6	ENSG00000169016.17	ENST00000307236.8:ENST00000542100.5:ENST00000546212.2:ENST00000381525.8:ENST00000444832.5:ENST00000428221.5:ENST00000455198.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	3.44697	3.46349	3.48001	0.00126219	0.00101442	0.013837	0.0112862
chr16	88805796	88805869	15807286	0	+	0.589041	(0.53,0.59]	chr16	1258118	2	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9:ENST00000562747.1:ENST00000569140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.37399	3.463365	4.55274	0.0126178	0.00167999	0.0717599	0.0164993
chr11	67400688	67400765	12427616	0	-	0.545455	(0.53,0.59]	chr11	965297	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8:ENST00000529724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.16037	3.46335	4.76633	0.0254312	6.98999e-4	0.117089	0.00846751
chr19	7973724	7973801	17448051	0	-	0.545455	(0.53,0.59]	chr19	1458205	1	CDS	CDS:EXON_MRNA	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1:ENST00000595499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.16037	3.46335	4.76633	0.0254312	6.98999e-4	0.117089	0.00846751
chr4	144111135	144111232	5696548	0	-	0.28866000000000003	[0,0.29]	chr4	451524	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000510771.1:ENST00000650526.1:ENST00000324022.14	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	5	50	2	2.50979	3.463075	4.41636	0.00608277	5.96432e-8	0.0438976	3.58704e-6
chr12	56611961	56612056	13351840	0	-	0.536842	(0.53,0.59]	chr12	1051683	3	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1	protein_coding	protein_coding	protein_coding	protein_coding	5	70	2	3.30344	3.46274	3.62204	4.3021e-4	9.28103e-6	0.00620274	2.58687e-4
chr7	135614215	135614273	8552980	0	+	0.37931	(0.36,0.39]	chr7	652808	2	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.32678	3.46274	4.5987	0.0193538	9.0208e-4	0.0943643	0.0102618
chr2	96278236	96278297	2790289	0	-	0.508197	(0.49,0.53]	chr2	248706	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	64	2	2.89482	3.46258	4.03034	5.58105e-5	4.26396e-5	0.00112733	9.97006e-4
chr12	56615508	56615607	13351882	0	-	0.454545	(0.42,0.455]	chr12	1051701	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1:ENST00000546695.5:ENST00000549506.5:ENST00000550730.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	100	2	3.46037	3.46226	3.46415	2.69406e-6	7.99201e-7	1.01443e-4	3.30403e-5
chr11	118408999	118409098	12157964	0	+	0.474747	(0.455,0.49]	chr11	936963	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000527186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	121	2	2.2457	3.46225	4.6788	6.93121e-4	3.33777e-10	0.00876781	3.96624e-8
chr3	123146178	123146259	3706926	0	+	0.407407	(0.39,0.42]	chr3	316843	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000472319.5:ENST00000467157.1:ENST00000485208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.98448	3.4622200000000003	3.93996	0.00841622	2.45186e-4	0.054565	0.00370692
chr4	73091627	73091723	5466127	0	-	0.479167	(0.455,0.49]	chr4	437754	11	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	3.18852	3.4619	3.73528	7.41674e-5	1.49591e-6	0.00156055	5.62205e-5
chr6	27824124	27824224	7105154	0	+	0.62	(0.59,1]	chr6	543465	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C11	ENSG00000197238.5	ENST00000355057.3	protein_coding	protein_coding	protein_coding	protein_coding	15	376	2	2.9629	3.46182	3.96074	2.45688e-5	2.08401e-8	5.7452e-4	1.59215e-6
chr7	150373544	150373644	8614894	0	+	0.56	(0.53,0.59]	chr7	657739	7	UTR3	UTR3:EXON_MRNA:INTRON	REPIN1:ZNF775	ENSG00000214022.12:ENSG00000196456.13	ENST00000479668.5:ENST00000478789.5:ENST00000397281.6:ENST00000444957.3:ENST00000489432.7:ENST00000425389.2	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.72897	3.461735	4.1945	1.64347e-4	1.72205e-5	0.00269001	4.72777e-4
chr3	122409831	122409927	3703565	0	+	0.375	(0.36,0.39]	chr3	316476	1	UTR3	UTR3:EXON_MRNA	FAM162A	ENSG00000114023.15	ENST00000232125.9:ENST00000477892.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.19	3.46173	4.73346	0.0111937	3.2963e-4	0.0665375	0.00504024
chr1	180884066	180884164	586606	0	+	0.428571	(0.42,0.455]	chr1	60742	1	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	3.20977	3.46171	3.71365	2.63375e-4	1.69634e-5	0.00427022	4.28575e-4
chr11	6616503	6616581	12249950	0	-	0.410256	(0.39,0.42]	chr11	946854	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000528807.2:ENST00000645020.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.49701	3.461425	4.42584	0.0339607	0.00199429	0.141431	0.0189001
chr5	138156962	138157044	6860576	0	-	0.414634	(0.39,0.42]	chr5	524777	2	UTR3	UTR3:EXON_MRNA:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000472478.6:ENST00000411594.6:ENST00000512140.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.49701	3.461425	4.42584	0.0339607	0.00199429	0.141431	0.0189001
chr11	65122086	65122177	12421574	0	-	0.615385	(0.59,1]	chr11	963727	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAU:SYVN1	ENSG00000149806.11:ENSG00000162298.19	ENST00000529639.6:ENST00000527548.5:ENST00000531357.1:ENST00000279259.7:ENST00000526555.5:ENST00000434372.2:ENST00000530451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	561	2	3.12093	3.4612600000000002	3.80159	2.80082e-6	8.15095e-9	1.05124e-4	6.50141e-7
chr1	40422195	40422289	154037	0	+	0.43617	(0.42,0.455]	chr1	19281	2	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	3.3735	3.46124	3.54898	1.63366e-6	1.34101e-6	6.65292e-5	5.13503e-5
chr2	222633252	222633307	3197023	0	-	0.327273	(0.29,0.33]	chr2	281716	2	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.99415	3.460935	4.92772	0.0333928	1.56621e-4	0.140128	0.00259991
chr11	77734750	77734842	12474501	0	-	0.478261	(0.455,0.49]	chr11	970420	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RSF1:FTH1P16	ENSG00000048649.14:ENSG00000227376.1	ENST00000308488.11:ENST00000528095.5:ENST00000534794.1:ENST00000440064.2:ENST00000435241.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	6	82	2	2.17632	3.460825	4.74533	0.00634339	3.57868e-9	0.0446708	3.18911e-7
chr19	35262545	35262618	17304053	0	+	0.589041	(0.53,0.59]	chr19	1430674	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	47	2	2.92962	3.460765	3.99191	0.0012954	5.86351e-5	0.0136936	0.00129243
chr1	37706977	37707064	142729	0	+	0.528736	(0.49,0.53]	chr1	17838	1	CDS	CDS:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.95385	3.4607099999999997	3.96757	2.87717e-4	6.21316e-5	0.00423277	0.00134149
chr3	31636937	31637034	3392506	0	+	0.340206	(0.33,0.36]	chr3	295101	10	UTR3	UTR3:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	2.79603	3.460685	4.12534	8.41362e-5	6.92433e-7	0.00172936	2.92467e-5
chr1	202731883	202731939	1451747	0	-	0.464286	(0.455,0.49]	chr1	145785	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000472822.6:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1:ENST00000235790.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.9967	3.460665	3.92463	0.0113417	0.00650423	0.0665375	0.0454205
chr17	80393498	80393597	16373532	0	+	0.474747	(0.455,0.49]	chr17	1330943	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF213	ENSG00000173821.19	ENST00000508628.6:ENST00000582970.5:ENST00000411702.7:ENST00000427003.7:ENST00000560083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	2.9967	3.460665	3.92463	0.0113417	0.00650423	0.0665375	0.0454205
chr6	39195875	39195931	7690422	0	-	0.482143	(0.455,0.49]	chr6	589685	1	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.9967	3.460665	3.92463	0.0113417	0.00650423	0.0665375	0.0454205
chr19	51225802	51225895	17378873	0	+	0.580645	(0.53,0.59]	chr19	1445215	1	CDS	CDS:EXON_MRNA	CD33	ENSG00000105383.15	ENST00000421133.6:ENST00000436584.6:ENST00000262262.5:ENST00000391796.7:ENST00000601785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.36244	3.46052	4.5586	0.0131162	0.00161229	0.073569	0.0169168
chr3	184326526	184326577	3949264	0	+	0.568627	(0.53,0.59]	chr3	332458	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000448284.1:ENST00000466311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.36244	3.46052	4.5586	0.0131162	0.00161229	0.073569	0.0169168
chr9	35056680	35056779	10638055	0	-	0.545455	(0.53,0.59]	chr9	804494	29	UTR3	UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000681537.1:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.36244	3.46052	4.5586	0.0131162	0.00161229	0.073569	0.0169168
chr10	75212229	75212298	11126416	0	+	0.405797	(0.39,0.42]	chr10	846632	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5:ENST00000413289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	61	2	2.67296	3.460515	4.24807	0.00159022	2.68001e-7	0.0168452	1.29826e-5
chr12	111453669	111453757	13539850	0	-	0.579545	(0.53,0.59]	chr12	1065240	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000484991.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000475132.1:ENST00000550844.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	3.29875	3.460395	3.62204	0.00191422	4.3021e-4	0.018324	0.00620274
chr12	6968470	6968531	13188894	0	-	0.57377	(0.53,0.59]	chr12	1032807	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	3.30943	3.46038	3.61133	0.0018255	4.55298e-4	0.0183913	0.00608573
chr6	36855221	36855320	7682942	0	-	0.40404	(0.39,0.42]	chr6	589169	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.38186	3.4602250000000003	4.53859	0.00601449	1.40716e-6	0.0434483	5.32869e-5
chr17	55393762	55393857	16605866	0	-	0.273684	[0,0.29]	chr17	1363845	13	UTR3	UTR3:EXON_MRNA	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.55853	3.4601800000000003	4.36183	0.007538	0.00170062	0.0497903	0.01759
chr8	140526648	140526748	10132109	0	-	0.32	(0.29,0.33]	chr8	760954	66	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.34203	3.460075	4.57812	0.010113	9.55291e-7	0.0626311	3.84721e-5
chr3	196055153	196055227	4663195	0	-	0.486486	(0.455,0.49]	chr3	385564	2	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5:ENST00000483983.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	233	2	3.23589	3.46002	3.68415	2.02891e-8	1.42688e-8	1.42367e-6	1.15339e-6
chr3	133588275	133588352	3750849	0	+	0.324675	(0.29,0.33]	chr3	321179	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	2.90642	3.459755	4.01309	1.07173e-4	1.46447e-7	0.0020647	7.79207e-6
chr1	78013050	78013144	314156	0	+	0.489362	(0.455,0.49]	chr1	31943	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DNAJB4:GIPC2	ENSG00000162616.9:ENSG00000137960.6	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000476882.1:ENST00000426517.1:ENST00000476396.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr13	50930682	50930765	13741270	0	+	0.46988	(0.455,0.49]	chr13	1082362	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RNASEH2B	ENSG00000136104.21	ENST00000422660.6:ENST00000646731.1:ENST00000645188.1:ENST00000643774.1:ENST00000646279.1:ENST00000646960.1:ENST00000336617.8:ENST00000637648.2:ENST00000645549.1:ENST00000644297.1:ENST00000644034.1:ENST00000645955.1:ENST00000643682.1:ENST00000644518.1:ENST00000642721.1:ENST00000616907.2:ENST00000643462.1:ENST00000644420.1:ENST00000645990.1:ENST00000642995.1:ENST00000646092.1:ENST00000644183.1:ENST00000644425.1:ENST00000643159.1:ENST00000645618.1:ENST00000611510.5:ENST00000642454.1:ENST00000646709.1:ENST00000647387.1:ENST00000645712.1:ENST00000645333.1:ENST00000643215.1:ENST00000495244.7:ENST00000642207.1:ENST00000645370.1:ENST00000459681.3:ENST00000646339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr13	114272536	114272629	13913010	0	+	0.462366	(0.455,0.49]	chr13	1090939	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC16	ENSG00000130177.16	ENST00000360383.7:ENST00000628084.2:ENST00000356221.8:ENST00000650489.1:ENST00000375310.5:ENST00000252457.9:ENST00000375308.5:ENST00000252458.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr19	9566817	9566914	17454622	0	-	0.463918	(0.455,0.49]	chr19	1459749	9	CDS	CDS:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5:ENST00000591447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr2	206142685	206142758	3133154	0	-	0.479452	(0.455,0.49]	chr2	276994	1	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr20	37518013	37518113	17962210	0	-	0.49	(0.455,0.49]	chr20	1522201	7	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr5	176346349	176346445	6988277	0	-	0.458333	(0.455,0.49]	chr5	534216	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.50904	3.4597249999999997	4.41041	0.0310515	0.00218771	0.131262	0.0202707
chr1	179071978	179072044	575640	0	+	0.606061	(0.59,1]	chr1	59698	2	CDS	CDS:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.68392	3.4596099999999996	4.2353	0.0202468	0.0165254	0.0984041	0.0873033
chr11	4094798	4094869	11774007	0	+	0.605634	(0.59,1]	chr11	900922	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RRM1	ENSG00000167325.15	ENST00000532710.5:ENST00000300738.10:ENST00000532170.5:ENST00000526865.5:ENST00000533349.5:ENST00000526350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	28	2	2.68392	3.4596099999999996	4.2353	0.0202468	0.0165254	0.0984041	0.0873033
chr19	35259004	35259064	17304014	0	+	0.6	(0.59,1]	chr19	1430661	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5:ENST00000599658.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.68392	3.4596099999999996	4.2353	0.0202468	0.0165254	0.0984041	0.0873033
chr7	143390853	143390939	8581675	0	+	0.686047	(0.59,1]	chr7	655868	3	UTR3	UTR3:EXON_MRNA	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.68392	3.4596099999999996	4.2353	0.0202468	0.0165254	0.0984041	0.0873033
chr8	38145962	38146054	9794958	0	-	0.630435	(0.59,1]	chr8	740491	1	CDS	CDS:EXON_MRNA	STAR	ENSG00000147465.12	ENST00000276449.9:ENST00000520114.1:ENST00000522050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.68392	3.4596099999999996	4.2353	0.0202468	0.0165254	0.0984041	0.0873033
chr11	893426	893519	12228553	0	-	0.709677	(0.59,1]	chr11	943958	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.77418	3.459505	4.14483	0.0183207	0.0160729	0.0945306	0.0860154
chr12	124863802	124863885	13601024	0	-	0.771084	(0.59,1]	chr12	1071756	2	UTR5	UTR5:EXON_MRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.77418	3.459505	4.14483	0.0183207	0.0160729	0.0945306	0.0860154
chr16	88809818	88809907	16075167	0	-	0.662921	(0.59,1]	chr16	1291797	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APRT	ENSG00000198931.11	ENST00000378364.8:ENST00000567713.5:ENST00000568319.5:ENST00000567391.5:ENST00000426324.6:ENST00000567057.5:ENST00000563655.5:ENST00000569616.1:ENST00000568575.1:ENST00000562464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.77418	3.459505	4.14483	0.0183207	0.0160729	0.0945306	0.0860154
chr21	33912343	33912399	18224354	0	-	0.482143	(0.455,0.49]	chr21	1546669	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5:ENST00000496044.5:ENST00000484627.5:ENST00000487374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	67	2	3.05529	3.459435	3.86358	4.88038e-5	5.11066e-6	0.00100497	1.72955e-4
chr17	78972265	78972363	16698075	0	-	0.653061	(0.59,1]	chr17	1376215	7	CDS	CDS:UTR3:EXON_MRNA	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.28778	3.4594199999999997	4.63106	0.0556537	0.00537945	0.191528	0.0406564
chr19	10283633	10283709	17224624	0	+	0.631579	(0.59,1]	chr19	1418496	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000588645.1:ENST00000592686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.28778	3.4594199999999997	4.63106	0.0556537	0.00537945	0.191528	0.0406564
chr22	37877872	37877971	18364683	0	+	0.494949	(0.49,0.53]	chr22	1562205	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	5	63	2	3.23781	3.459345	3.68088	5.17993e-5	1.82756e-5	0.00115752	4.52458e-4
chr18	59329803	59329902	17142331	0	-	0.323232	(0.29,0.33]	chr18	1407602	21	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	15	149	2	2.71818	3.45927	4.20036	9.84599e-5	2.2224e-11	0.00194364	3.55342e-9
chr1	161958554	161958654	503815	0	+	0.53	(0.49,0.53]	chr1	54598	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	3.23548	3.45897	3.68246	3.06313e-4	2.76544e-4	0.00444204	0.00442973
chr17	63765911	63765993	16634876	0	-	0.451219	(0.42,0.455]	chr17	1367620	1	CDS	CDS:EXON_MRNA	CCDC47	ENSG00000108588.14	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1:ENST00000584112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	92	2	2.6588	3.4587849999999998	4.25877	4.53003e-5	2.31906e-7	9.46034e-4	1.29516e-5
chr11	46076153	46076253	12380242	0	-	0.34	(0.33,0.36]	chr11	955672	263	INTRON	INTRON	PHF21A	ENSG00000135365.16	ENST00000676320.1:ENST00000323180.10:ENST00000418153.6:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	1.82394	3.4587649999999996	5.09359	0.0494504	1.35518e-8	0.18557	1.00853e-6
chr12	54397425	54397487	13343728	0	-	0.580645	(0.53,0.59]	chr12	1049749	2	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000547197.1:ENST00000549601.1:ENST00000552431.5:ENST00000552387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.29875	3.4586550000000003	3.61856	0.0303021	0.00191422	0.129773	0.018324
chr19	7543484	7543584	17217253	0	+	0.56	(0.53,0.59]	chr19	1416694	4	SS5_PROX	SS5_PROX:INTRON	PNPLA6	ENSG00000032444.17	ENST00000221249.10:ENST00000545201.6:ENST00000450331.7:ENST00000414982.7:ENST00000600737.6:ENST00000599311.5:ENST00000595176.5:ENST00000595889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	22	2	3.29875	3.4586550000000003	3.61856	0.0303021	0.00191422	0.129773	0.018324
chr22	36512530	36512602	18499610	0	-	0.583333	(0.53,0.59]	chr22	1578417	2	CDS	CDS:UTR3:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000462641.1:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	3.29875	3.4586550000000003	3.61856	0.0303021	0.00191422	0.129773	0.018324
chr4	2929493	2929590	4687499	0	+	0.56701	(0.53,0.59]	chr4	388871	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	3.29875	3.4586550000000003	3.61856	0.0303021	0.00191422	0.129773	0.018324
chr17	78175091	78175169	16693278	0	-	0.641026	(0.59,1]	chr17	1375300	4	CDS	CDS:UTR3:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	3.17616	3.4585	3.74084	0.00434232	4.03818e-4	0.0339139	0.00550292
chr2	26135021	26135118	1685700	0	+	0.402062	(0.39,0.42]	chr2	164739	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	62	2	3.08509	3.458295	3.8315	4.0097e-5	7.07508e-6	8.62567e-4	2.27834e-4
chr1	108637335	108637434	394957	0	+	0.393939	(0.39,0.42]	chr1	38052	23	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	3.24562	3.458225	3.67083	5.84121e-5	1.93844e-5	0.00129108	4.72961e-4
chr17	1661077	1661162	16401385	0	-	0.505882	(0.49,0.53]	chr17	1334882	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1:ENST00000573725.1:ENST00000572445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	3.02891	3.45811	3.88731	8.23332e-4	4.40111e-6	0.0102121	1.3969e-4
chr1	109409927	109410014	1220451	0	-	0.390805	(0.39,0.42]	chr1	119073	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	102	2	2.27503	3.4578700000000002	4.64071	0.0025739	4.63819e-10	0.0235767	5.30899e-8
chr17	8475603	8475703	16432962	0	-	0.41	(0.39,0.42]	chr17	1340589	15	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.35466	3.457815	3.56097	6.12149e-4	1.40185e-4	0.00818575	0.00236775
chr9	112232168	112232238	10803012	0	-	0.514286	(0.49,0.53]	chr9	818439	2	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	13	147	2	3.18595	3.45779	3.72963	7.66765e-7	7.87932e-8	3.19187e-5	5.05771e-6
chr22	21805944	21806039	18442820	0	-	0.389474	(0.36,0.39]	chr22	1572543	2	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	25	233	2	3.09224	3.457695	3.82315	1.66494e-7	1.53101e-10	9.7768e-6	1.97538e-8
chr3	14198116	14198212	3319946	0	+	0.364583	(0.36,0.39]	chr3	292182	1	UTR3	UTR3:EXON_MRNA	LSM3	ENSG00000170860.4	ENST00000306024.4	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.75914	3.4576200000000004	4.1561	8.69953e-4	2.14257e-5	0.0101157	5.67278e-4
chr4	75793830	75793901	4892938	0	+	0.394366	(0.39,0.42]	chr4	403045	3	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.88836	3.4576149999999997	4.02687	0.0102432	4.35816e-5	0.062872	0.00091744700000000005
chr1	114707652	114707751	1239482	0	-	0.313131	(0.29,0.33]	chr1	121309	33	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.24226	3.4576	4.67294	0.0306054	4.55565e-7	0.130226	2.04528e-5
chr1	246639658	246639757	812645	0	+	0.494949	(0.49,0.53]	chr1	80352	47	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	3.02891	3.45759	3.88627	8.23332e-4	8.23116e-8	0.0102121	4.7302e-6
chr17	59938638	59938737	16297495	0	+	0.40404	(0.39,0.42]	chr17	1321956	17	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.48908	3.45746	4.42584	0.0101318	0.00199429	0.0626311	0.0189001
chr11	61323978	61324057	12404150	0	-	0.518987	(0.49,0.53]	chr11	960243	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000540784.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000541513.2:ENST00000543162.2:ENST00000537120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	68	2	2.68653	3.4574249999999997	4.22832	0.00122977	3.3186e-7	0.013593	1.5646e-5
chr12	6870283	6870383	12714953	0	+	0.55	(0.53,0.59]	chr12	987156	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000488464.6:ENST00000535434.5:ENST00000474253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	123	2	3.2364	3.4574100000000003	3.67842	5.25642e-6	5.49252e-7	1.77056e-4	2.40221e-5
chr1	28622081	28622165	913700	0	-	0.452381	(0.42,0.455]	chr1	95554	1	CDS	CDS:UTR5:EXON_MRNA	TAF12	ENSG00000120656.13	ENST00000495422.2:ENST00000373824.9:ENST00000263974.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr14	77821085	77821142	14719247	0	-	0.438596	(0.42,0.455]	chr14	1153555	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199440.1	ENST00000362570.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr15	77484822	77484920	15037368	0	+	0.44898	(0.42,0.455]	chr15	1182624	20	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr16	70538322	70538391	15729809	0	+	0.42029	(0.42,0.455]	chr16	1252917	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr17	1519565	1519662	16399985	0	-	0.443299	(0.42,0.455]	chr17	1334543	20	UTR3	UTR3:EXON_MRNA	PITPNA	ENSG00000174238.15	ENST00000313486.12:ENST00000539476.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr2	128133140	128133200	2059905	0	+	0.433333	(0.42,0.455]	chr2	193236	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr7	138581696	138581771	8563518	0	+	0.426667	(0.42,0.455]	chr7	653321	1	CDS	CDS:EXON_MRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr8	96965990	96966046	9503719	0	+	0.428571	(0.42,0.455]	chr8	722614	2	CDS	CDS:EXON_MRNA	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.06293	3.457215	3.8515	0.0119089	0.00492128	0.0686664	0.0366648
chr18	9122512	9122596	16751006	0	+	0.345238	(0.33,0.36]	chr18	1381364	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFV2:RP11-21J18.1	ENSG00000178127.13:ENSG00000265257.5	ENST00000318388.11:ENST00000578850.1:ENST00000579126.5:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	6	54	2	2.86825	3.45721	4.04617	2.65216e-4	1.29334e-6	0.004287	4.97655e-5
chr4	7774774	7774873	4712706	0	+	0.585859	(0.53,0.59]	chr4	390956	27	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	3	31	2	1.87133	3.457155	5.04298	0.0308819	1.91383e-4	0.130016	0.0032874
chr17	48058773	48058869	16253363	0	+	0.520833	(0.49,0.53]	chr17	1317132	6	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	3.29825	3.456805	3.61536	0.00019429700000000001	3.77921e-6	0.00332542	1.22746e-4
chr7	150946965	150947054	9128621	0	-	0.651685	(0.59,1]	chr7	697450	2	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.11894	3.45672	4.7945	0.0293157	0.0031766	0.128478	0.0279054
chr16	3658792	3658865	15830477	0	-	0.630137	(0.59,1]	chr16	1263599	1	CDS	CDS:EXON_MRNA	TRAP1	ENSG00000126602.11	ENST00000575707.5:ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000574494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.04362	3.456695	4.86977	0.036186	0.00246014	0.145024	0.0230058
chr19	23827950	23828049	17276793	0	+	0.575758	(0.53,0.59]	chr19	1427763	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZNF726P1:RPSAP58	ENSG00000233836.7:ENSG00000225178.5	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2:ENST00000484897.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene:processed_pseudogene	8	108	2	3.13428	3.456665	3.77905	1.10636e-5	1.21619e-6	3.28953e-4	4.71713e-5
chr1	205087806	205087904	1459081	0	-	0.377551	(0.36,0.39]	chr1	147068	18	UTR3	UTR3:EXON_MRNA	RBBP5	ENSG00000117222.14	ENST00000367164.1:ENST00000264515.11	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.6711	3.45652	4.24194	0.00434596	0.00276729	0.0335517	0.0247437
chr16	18358307	18358394	15874891	0	-	0.528736	(0.49,0.53]	chr16	1268806	2	CDS	CDS:UTR3:EXON_MRNA	NPIPA9	ENSG00000233024.7	ENST00000545114.5:ENST00000427999.6:ENST00000327792.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.48488	3.45639	4.4279	0.032052	0.00196987	0.133433	0.0193972
chr19	40613466	40613529	17330362	0	+	0.68254	(0.59,1]	chr19	1436011	2	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000546155.5:ENST00000601032.5:ENST00000612121.4:ENST00000600499.5:ENST00000610893.4:ENST00000612845.4:ENST00000599724.5:ENST00000597071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.77418	3.456345	4.13851	0.0160729	5.66622e-5	0.0860154	0.00114182
chr19	14119984	14120079	17478632	0	-	0.494737	(0.49,0.53]	chr19	1464243	6	UTR3	UTR3:EXON_MRNA	ASF1B	ENSG00000105011.9	ENST00000263382.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.23006	3.45626	3.68246	0.00253719	3.06313e-4	0.0233955	0.00442973
chr17	59682349	59682428	16295465	0	+	0.379747	(0.36,0.39]	chr17	1321727	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	2.19449	3.456195	4.7179	0.00263771	1.88333e-10	0.0239302	2.38238e-8
chr1	32668323	32668398	130283	0	+	0.373333	(0.36,0.39]	chr1	16081	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000475321.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	61	2	3.27479	3.45613	3.63747	5.51752e-5	3.12796e-6	0.00122694	1.0463e-4
chr19	5151709	5151809	17209926	0	+	0.52	(0.49,0.53]	chr19	1415254	3	UTR3	UTR3:EXON_MRNA	KDM4B	ENSG00000127663.15	ENST00000159111.9:ENST00000611640.4:ENST00000536461.5:ENST00000589104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.78962	3.456125	4.12263	0.0129044	0.00591451	0.0725185	0.0427941
chr11	102396818	102396916	12562686	0	-	0.326531	(0.29,0.33]	chr11	974345	6	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	3.42047	3.455915	3.49136	1.8012e-4	6.10415e-7	0.003142	2.62593e-5
chr7	16674411	16674496	8148861	0	+	0.458824	(0.455,0.49]	chr7	622117	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	62	2	3.01932	3.455835	3.89235	9.60445e-5	2.37034e-5	0.00190731	5.60012e-4
chr8	43018696	43018795	9307500	0	+	0.242424	[0,0.29]	chr8	712746	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HOOK3:RP11-598P20.5	ENSG00000168172.9:ENSG00000254673.1	ENST00000307602.9:ENST00000533338.1:ENST00000534420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.80134	3.45582	4.1103	0.0049344	0.00493104	0.0379087	0.0366648
chr3	49026686	49026786	4171697	0	-	0.54	(0.53,0.59]	chr3	350229	1	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	39	2	1.71269	3.45576	5.19883	0.0222391	8.7034e-5	0.104593	0.00177086
chr18	3457580	3457667	16730872	0	+	0.528736	(0.49,0.53]	chr18	1380204	3	CDS	CDS:UTR3:EXON_MRNA	TGIF1	ENSG00000177426.22	ENST00000552383.5:ENST00000401449.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000405385.7:ENST00000407501.6:ENST00000343820.10:ENST00000577543.5:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000551333.1:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.78794	3.455285	4.12263	0.00591451	0.00251838	0.0427941	0.0226599
chr18	57607579	57607648	17137533	0	-	0.521739	(0.49,0.53]	chr18	1407162	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000411676.6:ENST00000540592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.78794	3.455285	4.12263	0.00591451	0.00251838	0.0427941	0.0226599
chr22	35746561	35746659	18494519	0	-	0.5	(0.49,0.53]	chr22	1577801	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000359369.8:ENST00000463509.1:ENST00000416721.6:ENST00000495377.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.78794	3.455285	4.12263	0.00591451	0.00251838	0.0427941	0.0226599
chr1	219979417	219979516	1510775	0	-	0.484848	(0.455,0.49]	chr1	150982	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	3.24013	3.4552750000000003	3.67042	5.30989e-5	2.46218e-6	0.00118379	8.56868e-5
chr11	125583956	125584047	12194213	0	+	0.483516	(0.455,0.49]	chr11	940681	4	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	3.24013	3.4552750000000003	3.67042	5.30989e-5	2.46218e-6	0.00118379	8.56868e-5
chr19	5238918	5238990	17435277	0	-	0.791667	(0.59,1]	chr19	1455740	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5:ENST00000592099.5:ENST00000588012.5:ENST00000262963.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	29	2	2.9228	3.455155	3.98751	0.0301044	0.00981698	0.129773	0.0612992
chr19	19528126	19528198	17264141	0	+	0.666667	(0.59,1]	chr19	1426421	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	29	2	2.9228	3.455155	3.98751	0.0301044	0.00981698	0.129773	0.0612992
chr2	230725142	230725229	3225845	0	-	0.609195	(0.59,1]	chr2	283762	1	EXON_PSEUDO	EXON_PSEUDO	BANF1P3	ENSG00000237758.1	ENST00000412556.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	29	2	2.9228	3.455155	3.98751	0.0301044	0.00981698	0.129773	0.0612992
chr21	25361996	25362084	18080029	0	+	0.659091	(0.59,1]	chr21	1532966	3	EXON_PSEUDO	EXON_PSEUDO	RPL13AP7	ENSG00000213885.4	ENST00000425147.1	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	1	29	2	2.9228	3.455155	3.98751	0.0301044	0.00981698	0.129773	0.0612992
chr3	47420553	47420626	4160744	0	-	0.671233	(0.59,1]	chr3	348128	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5:ENST00000465628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.9228	3.455155	3.98751	0.0301044	0.00981698	0.129773	0.0612992
chr15	59768748	59768847	14962128	0	+	0.444444	(0.42,0.455]	chr15	1175886	5	EXON_PSEUDO	EXON_PSEUDO	RPS3AP6	ENSG00000234797.5	ENST00000484430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	73	2	2.33282	3.455075	4.57733	0.00677333	1.70896e-8	0.0462932	1.23244e-6
chr5	138558552	138558604	6862382	0	-	0.461538	(0.455,0.49]	chr5	525201	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000512328.1:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	2.74805	3.455045	4.16204	3.3051e-4	1.83061e-5	0.00470169	4.99708e-4
chr10	73383576	73383633	11571485	0	-	0.526316	(0.49,0.53]	chr10	880881	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.78723	3.45493	4.12263	0.00591451	7.16432e-4	0.0427941	0.00859467
chr21	45497598	45497661	18145793	0	+	0.698413	(0.59,1]	chr21	1539821	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	62	2	2.56487	3.45487	4.34487	0.0123678	0.00117129	0.0705839	0.0127267
chr8	100722039	100722130	9976147	0	-	0.659341	(0.59,1]	chr8	752718	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000318607.10:ENST00000519004.5:ENST00000523555.6:ENST00000517921.2:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	964	2	3.09276	3.4547600000000003	3.81676	7.94482e-7	1.65356e-9	3.64716e-5	1.6405e-7
chr1	32113332	32113432	126424	0	+	0.44	(0.42,0.455]	chr1	15557	48	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.50649	3.454625	4.40276	0.0302857	0.0017618	0.130016	0.0180053
chr3	143989586	143989663	3794142	0	+	0.428571	(0.42,0.455]	chr3	324063	2	CDS	CDS:EXON_MRNA:INTRON	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000495414.5:ENST00000492452.2:ENST00000441925.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.50649	3.454625	4.40276	0.0302857	0.0017618	0.130016	0.0180053
chr10	74108970	74109063	11117551	0	+	0.55914	(0.53,0.59]	chr10	846287	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	83	2	3.24518	3.454535	3.66389	2.13854e-5	1.39722e-5	5.67072e-4	3.61675e-4
chr7	44467896	44467977	8260278	0	+	0.518519	(0.49,0.53]	chr7	629216	1	EXON_PSEUDO	EXON_PSEUDO	RPL32P18	ENSG00000146677.7	ENST00000487895.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	53	2	2.7864	3.454515	4.12263	0.00591451	5.59852e-5	0.0427941	0.00113053
chr22	17592493	17592583	18423762	0	-	0.477778	(0.455,0.49]	chr22	1569460	5	UTR3	UTR3:EXON_MRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	1.93369	3.4544699999999997	4.97525	0.00999269	1.38474e-4	0.0620664	0.00254294
chr1	150511036	150511117	468334	0	+	0.580247	(0.53,0.59]	chr1	47400	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ECM1	ENSG00000143369.15	ENST00000470432.5:ENST00000369049.8:ENST00000498579.5:ENST00000346569.6:ENST00000369047.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	3.29588	3.45441	3.61294	0.0310038	1.96478e-4	0.130016	0.00335505
chr21	21159766	21159866	18066683	0	+	0.26	[0,0.29]	chr21	1532490	1608	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.61628	3.45437	4.29246	0.0101434	0.00254021	0.0626311	0.0227257
chr5	53884523	53884620	6575899	0	-	0.412371	(0.39,0.42]	chr5	509078	7	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.01677	3.454365	4.89196	0.0235818	2.62166e-4	0.111323	0.0039188
chrX	154354906	154354989	19278033	0	-	0.566265	(0.53,0.59]	chrX	1638285	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	48	2	2.72478	3.454255	4.18373	0.00324675	1.85867e-5	0.0282494	4.56627e-4
chr1	156232337	156232425	486915	0	+	0.454545	(0.42,0.455]	chr1	51454	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PMF1-BGLAP:PMF1	ENSG00000260238.6:ENSG00000160783.19	ENST00000490491.5:ENST00000368279.7:ENST00000466489.1:ENST00000368273.8:ENST00000368276.8:ENST00000368277.3:ENST00000606952.5:ENST00000320139.5:ENST00000567140.3:ENST00000497069.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr1	203722547	203722618	669700	0	+	0.422535	(0.42,0.455]	chr1	67484	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr1	236900020	236900119	771949	0	+	0.444444	(0.42,0.455]	chr1	77942	25	UTR3	UTR3:EXON_MRNA:INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000681937.1:ENST00000366576.3:ENST00000470570.2:ENST00000681813.1:ENST00000652483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr14	55154711	55154806	14637449	0	-	0.431579	(0.42,0.455]	chr14	1146702	2	CDS	CDS:EXON_MRNA	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr2	195706700	195706785	2290635	0	+	0.435294	(0.42,0.455]	chr2	207598	2	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr3	122407280	122407343	3703538	0	+	0.428571	(0.42,0.455]	chr3	316469	1	CDS	CDS:EXON_MRNA	FAM162A	ENSG00000114023.15	ENST00000232125.9:ENST00000477892.5:ENST00000469967.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr5	43644258	43644325	5960343	0	+	0.447761	(0.42,0.455]	chr5	467067	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1:ENST00000503651.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr7	64141537	64141633	8831665	0	-	0.427083	(0.42,0.455]	chr7	674355	1	EXON_PSEUDO	EXON_PSEUDO	RP11-165H4.2	ENSG00000236976.1	ENST00000454924.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.66697	3.45415	4.24133	0.0190326	0.00326918	0.0958835	0.0282494
chr1	32102573	32102673	126367	0	+	0.57	(0.53,0.59]	chr1	15551	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000336294.10:ENST00000441402.5:ENST00000468135.5:ENST00000476968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	20	2	2.35511	3.453925	4.55274	0.0445399	0.00167999	0.172163	0.0164993
chr14	22901809	22901883	14527679	0	-	0.581081	(0.53,0.59]	chr14	1138039	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000553884.5:ENST00000556838.5:ENST00000557245.1:ENST00000557127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.35511	3.453925	4.55274	0.0445399	0.00167999	0.172163	0.0164993
chr2	26277072	26277160	1686288	0	+	0.556818	(0.53,0.59]	chr2	164838	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.35511	3.453925	4.55274	0.0445399	0.00167999	0.172163	0.0164993
chr7	45102350	45102420	8800992	0	-	0.557143	(0.53,0.59]	chr7	671543	2	CDS	CDS:EXON_MRNA	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000483615.1:ENST00000482482.1:ENST00000478116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	2.35511	3.453925	4.55274	0.0445399	0.00167999	0.172163	0.0164993
chr1	202728937	202729035	1451714	0	-	0.408163	(0.39,0.42]	chr1	145774	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	3.14527	3.45388	3.76249	5.33048e-4	1.04037e-5	0.00742114	2.85665e-4
chr2	170966330	170966430	2206511	0	+	0.5	(0.49,0.53]	chr2	201863	3	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	3.33099	3.45384	3.57669	1.59567e-4	3.59064e-5	0.00263091	8.71318e-4
chr1	21846523	21846599	890877	0	-	0.592105	(0.59,1]	chr1	92342	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	125	2	2.76986	3.4537199999999997	4.13758	0.00108867	2.62983e-6	0.0125646	9.04922e-5
chr20	5575978	5576078	17889341	0	-	0.28	[0,0.29]	chr20	1514327	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	3.0735	3.453615	3.83373	0.00785095	6.92632e-7	0.0520241	2.9248e-5
chr21	14485911	14486011	18163802	0	-	0.38	(0.36,0.39]	chr21	1542429	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	44	2	2.63804	3.4536000000000002	4.26916	8.58673e-4	9.09682e-6	0.0105583	2.53877e-4
chr7	137878712	137878810	9097059	0	-	0.540816	(0.53,0.59]	chr7	694029	39	UTR3	UTR3:EXON_MRNA	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.86102	3.45315	4.04528	0.0017805	4.28524e-5	0.0172974	9.98851e-4
chr5	179730741	179730841	6414481	0	+	0.39	(0.36,0.39]	chr5	499211	22	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	208	2	3.05483	3.4530399999999997	3.85125	6.37861e-8	2.5445e-9	3.80147e-6	2.58172e-7
chr22	36519404	36519470	18499685	0	-	0.590909	(0.59,1]	chr22	1578440	1	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000458572.1:ENST00000455547.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.19052	3.4528099999999995	4.7151	0.0237927	0.00412279	0.109413	0.0325842
chr7	143382800	143382887	8581580	0	+	0.609195	(0.59,1]	chr7	655830	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ZYX:MIR6892	ENSG00000159840.16:ENSG00000278449.1	ENST00000449630.5:ENST00000322764.10:ENST00000468083.1:ENST00000354434.8:ENST00000392910.6:ENST00000477373.1:ENST00000612346.1:ENST00000436448.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	2	37	2	2.19052	3.4528099999999995	4.7151	0.0237927	0.00412279	0.109413	0.0325842
chrX	48918834	48918929	19063667	0	-	0.747368	(0.59,1]	chrX	1620615	1	UTR5	UTR5:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.19052	3.4528099999999995	4.7151	0.0237927	0.00412279	0.109413	0.0325842
chr12	54369225	54369319	13343462	0	-	0.606383	(0.59,1]	chr12	1049674	2	UTR3	UTR3:EXON_MRNA	ZNF385A	ENSG00000161642.18	ENST00000551109.5:ENST00000352268.10:ENST00000394313.7:ENST00000338010.9:ENST00000550779.5:ENST00000546970.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	3.41536	3.45278	3.4902	0.00164655	0.00130379	0.0163443	0.0142445
chr12	102074353	102074453	13508132	0	-	0.48	(0.455,0.49]	chr12	1061931	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000546385.5:ENST00000251074.5:ENST00000547269.1:ENST00000551744.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.24913	3.45229	3.65545	0.00239443	3.50134e-4	0.0225356	0.0049086
chr17	46030402	46030500	16565480	0	-	0.479592	(0.455,0.49]	chr17	1360684	6	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	3.24913	3.45229	3.65545	0.00239443	3.50134e-4	0.0225356	0.0049086
chr1	87107189	87107289	341439	0	+	0.3	(0.29,0.33]	chr1	33632	26	UTR3	UTR3:EXON_MRNA:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	3.08169	3.452245	3.8228	0.00114594	1.45428e-4	0.0130468	0.00244094
chr9	131202316	131202416	10496411	0	+	0.29	[0,0.29]	chr9	793360	2	INTRON	INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	3.26961	3.452245	3.63488	0.00229774	7.12896e-4	0.0210664	0.00897774
chr1	155289882	155289980	1307529	0	-	0.561224	(0.53,0.59]	chr1	132189	7	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.91231	3.4521100000000002	3.99191	1.23177e-4	5.86351e-5	0.00213941	0.00129243
chr19	8487025	8487125	17220844	0	+	0.48	(0.455,0.49]	chr19	1417699	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000597081.1:ENST00000596295.1:ENST00000598999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	3.43961	3.45175	3.46389	9.14164e-4	8.42878e-5	0.0110519	0.0015859
chr8	15650755	15650814	9207640	0	+	0.457627	(0.455,0.49]	chr8	703404	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1:ENST00000509177.1:ENST00000511783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	49	2	2.85172	3.45169	4.05166	0.010864	1.27965e-6	0.0643837	4.92895e-5
chrX	103216698	103216789	18792578	0	+	0.296703	(0.29,0.33]	chrX	1602161	3	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	3.3764	3.451665	3.52693	1.02344e-5	7.50057e-6	3.0736e-4	2.17987e-4
chr16	30224214	30224313	15913242	0	-	0.535354	(0.53,0.59]	chr16	1275086	12	CDS	CDS:EXON_MRNA:INTRON	NPIPB13	ENSG00000198064.13	ENST00000520915.5:ENST00000543463.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.34461	3.451605	4.5586	0.0457008	0.00161229	0.168044	0.0169168
chr17	82018991	82019088	16710408	0	-	0.587629	(0.53,0.59]	chr17	1378012	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CENPX	ENSG00000169689.15	ENST00000579520.5:ENST00000306704.10:ENST00000580435.5:ENST00000392359.8:ENST00000584600.5:ENST00000584514.5:ENST00000584347.1:ENST00000577379.5:ENST00000580090.5:ENST00000583767.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.34461	3.451605	4.5586	0.0457008	0.00161229	0.168044	0.0169168
chr20	64010199	64010258	17867598	0	+	0.542373	(0.53,0.59]	chr20	1511388	1	CDS	CDS:EXON_MRNA	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.34461	3.451605	4.5586	0.0457008	0.00161229	0.168044	0.0169168
chr3	49012177	49012274	3459262	0	+	0.57732000000000006	(0.53,0.59]	chr3	301931	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000488572.6:ENST00000489684.2:ENST00000608424.6:ENST00000438660.5:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000472878.5:ENST00000461687.1:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.34461	3.451605	4.5586	0.0457008	0.00161229	0.168044	0.0169168
chr9	35705610	35705670	10639535	0	-	0.566667	(0.53,0.59]	chr9	805013	2	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000486788.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	2.34461	3.451605	4.5586	0.0457008	0.00161229	0.168044	0.0169168
chrX	49570433	49570507	18695052	0	+	0.567568	(0.53,0.59]	chrX	1594987	1	UTR5	UTR5:EXON_MRNA	GAGE12G	ENSG00000215269.5	ENST00000445148.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	2.34461	3.451605	4.5586	0.0457008	0.00161229	0.168044	0.0169168
chr11	43446059	43446153	11920927	0	+	0.457447	(0.455,0.49]	chr11	911005	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.12994	3.4515599999999997	4.77318	0.0304832	4.7888e-4	0.130204	0.00628636
chr1	26774681	26774770	110951	0	+	0.539326	(0.53,0.59]	chr1	13337	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1:ENST00000636072.1:ENST00000466382.2:ENST00000636794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.89916	3.4515450000000003	4.00393	0.0108084	0.00890406	0.064368	0.0565003
chr13	21140922	21140995	13633422	0	+	0.589041	(0.53,0.59]	chr13	1074758	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SAP18	ENSG00000150459.12	ENST00000621421.4:ENST00000382533.8:ENST00000607003.5:ENST00000485646.1:ENST00000492245.5:ENST00000450573.5:ENST00000467636.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	2.89916	3.4515450000000003	4.00393	0.0108084	0.00890406	0.064368	0.0565003
chr17	42315647	42315744	16547438	0	-	0.546392	(0.53,0.59]	chr17	1357253	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000462269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	2.89916	3.4515450000000003	4.00393	0.0108084	0.00890406	0.064368	0.0565003
chr2	219212438	219212491	3191176	0	-	0.584906	(0.53,0.59]	chr2	280799	2	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000492543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	2.89916	3.4515450000000003	4.00393	0.0108084	0.00890406	0.064368	0.0565003
chr19	17859909	17859956	17255675	0	+	0.659574	(0.59,1]	chr19	1424742	1	UTR5	UTR5:EXON_MRNA	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000602216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	922	2	2.85475	3.45154	4.04833	5.10976e-6	3.1405e-10	1.72955e-4	3.76259e-8
chr8	47778727	47778799	9815517	0	-	0.416667	(0.39,0.42]	chr8	742475	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5:ENST00000536710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.75826	3.451515	4.14477	0.00103132	2.09513e-5	0.0121443	5.04211e-4
chr20	53576405	53576503	18015905	0	-	0.581633	(0.53,0.59]	chr20	1526885	8	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.47	3.4513949999999998	4.43279	0.0089333	0.0026472	0.0567495	0.0231864
chr2	86171276	86171345	2773067	0	-	0.550725	(0.53,0.59]	chr2	246370	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4:ENST00000474969.5:ENST00000409258.2:ENST00000460081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.0404	3.45136	4.86232	0.0362529	4.57805e-4	0.148525	0.00608573
chr3	184182756	184182825	3948243	0	+	0.536232	(0.53,0.59]	chr3	332040	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000411763.6:ENST00000439647.5:ENST00000621863.4:ENST00000461733.5:ENST00000442686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.0404	3.45136	4.86232	0.0362529	4.57805e-4	0.148525	0.00608573
chr6	31828529	31828625	7116692	0	+	0.635417	(0.59,1]	chr6	546209	6	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	13	297	2	3.39266	3.4512	3.50974	3.30318e-6	6.5289e-7	1.20493e-4	2.7853e-5
chr6	12124474	12124574	7055539	0	+	0.41	(0.39,0.42]	chr6	540264	47	CDS	CDS:UTR5:EXON_MRNA:INTRON	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.13132	3.4511900000000004	4.77106	0.02908	3.03764e-4	0.127648	0.00472028
chr17	42563960	42564052	16229145	0	+	0.48913	(0.455,0.49]	chr17	1313094	1	CDS	CDS:UTR5:EXON_MRNA	COASY	ENSG00000068120.15	ENST00000421097.6:ENST00000393818.3:ENST00000591779.5:ENST00000590958.5:ENST00000591753.1:ENST00000588353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.08961	3.45118	3.81275	0.0138827	0.00445157	0.0760883	0.0340751
chr4	82939637	82939736	5497607	0	-	0.474747	(0.455,0.49]	chr4	440410	2	CDS	CDS:UTR3:EXON_MRNA	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	3.08961	3.45118	3.81275	0.0138827	0.00445157	0.0760883	0.0340751
chr5	138419045	138419138	6244478	0	+	0.462366	(0.455,0.49]	chr5	486550	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000508386.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	3.08961	3.45118	3.81275	0.0138827	0.00445157	0.0760883	0.0340751
chrY	18992547	18992628	19363589	0	-	0.481481	(0.455,0.49]	chrY	1647595	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	TTTY14:CD24P4	ENSG00000176728.10:ENSG00000185275.6	ENST00000651734.1:ENST00000651886.1:ENST00000651396.1:ENST00000652699.1:ENST00000650923.1:ENST00000650897.1:ENST00000667260.1:ENST00000651032.1:ENST00000652153.1:ENST00000652348.1:ENST00000454875.2:ENST00000667640.1:ENST00000664804.1:ENST00000657901.1:ENST00000670354.1:ENST00000670243.1:ENST00000669716.1:ENST00000663061.1:ENST00000660026.1:ENST00000667262.1:ENST00000656768.1:ENST00000651355.1:ENST00000669869.1:ENST00000452584.5:ENST00000667617.1:ENST00000651286.1:ENST00000331787.2:ENST00000382840.3	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	18	2	3.08961	3.45118	3.81275	0.0138827	0.00445157	0.0760883	0.0340751
chr6	26199519	26199558	7101570	0	+	0.358974	(0.33,0.36]	chr6	542848	1	UTR5	UTR5:EXON_MRNA	H2BC7	ENSG00000277224.2	ENST00000356530.5	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.77416	3.451055	4.12795	8.34192e-4	9.44423e-7	0.00978328	4.21505e-5
chr6	34425978	34426071	7673874	0	-	0.634409	(0.59,1]	chr6	588083	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS10-NUDT3:RPS10	ENSG00000270800.3:ENSG00000124614.16	ENST00000639725.1:ENST00000639877.1:ENST00000648437.1:ENST00000644700.1:ENST00000344700.8:ENST00000621356.3:ENST00000644393.1:ENST00000494077.6:ENST00000480942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	61	1511	2	2.76027	3.45097	4.14167	4.21006e-6	4.95739e-11	1.47619e-4	7.2974e-9
chr2	99394266	99394332	1954167	0	+	0.318182	(0.29,0.33]	chr2	185590	1	CDS	CDS:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.0986	3.4509099999999995	4.80322	0.00919301	2.14303e-4	0.0581197	0.00359478
chr22	23894771	23894857	18309773	0	+	0.686047	(0.59,1]	chr22	1555582	1	CDS	CDS:EXON_MRNA	AP000350.10:MIF	ENSG00000251357.4:ENSG00000240972.2	ENST00000433835.3:ENST00000215754.8:ENST00000465752.1:ENST00000498385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	107	2	3.30708	3.450885	3.59469	0.00252451	1.43066e-5	0.0226777	4.04062e-4
chrX	153700758	153700847	19273610	0	-	0.539326	(0.53,0.59]	chrX	1637347	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	135	2	2.94394	3.450845	3.95775	1.95922e-5	5.42868e-8	5.27015e-4	3.31693e-6
chr1	54200243	54200338	200302	0	+	0.747368	(0.59,1]	chr1	25571	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.42639	3.45078	4.47517	0.0409084	0.00735659	0.163285	0.0491503
chr15	67521248	67521348	14990279	0	+	0.78	(0.59,1]	chr15	1178354	1	CDS_START	CDS_START:CDS:EXON_MRNA	C15orf61	ENSG00000189227.6	ENST00000342683.6	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.42639	3.45078	4.47517	0.0409084	0.00735659	0.163285	0.0491503
chr7	157267850	157267945	8636753	0	+	0.4	(0.39,0.42]	chr7	659767	2	UTR3	UTR3:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.2627100000000002	3.45077	4.63883	0.0192666	5.68159e-4	0.0966228	0.0077844
chr1	40070429	40070512	151962	0	+	0.421687	(0.42,0.455]	chr1	19036	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1:ENST00000494114.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	56	2	2.8096	3.45075	4.0919	0.00253237	9.53184e-7	0.0233955	3.84138e-5
chr7	139614423	139614493	9103813	0	-	0.485714	(0.455,0.49]	chr7	694673	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.35972	3.45073	4.54174	0.0058634	0.00130137	0.0427941	0.0136936
chr2	132254588	132254687	2878618	0	-	0.555556	(0.53,0.59]	chr2	257829	14	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	7	96	2	3.36474	3.450685	3.53663	4.77731e-5	2.01122e-6	0.00109049	7.18639e-5
chr11	60070233	60070331	11961714	0	+	0.418367	(0.39,0.42]	chr11	915694	1	UTR3	UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	3.30353	3.45008	3.59663	3.96559e-5	4.26553e-6	9.4815e-4	1.35769e-4
chr1	173938720	173938820	1373279	0	-	0.5	(0.49,0.53]	chr1	139986	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2:ENST00000479099.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.38683	3.449975	4.51312	0.012654	0.00156636	0.0718207	0.0156889
chrX	66169431	66169526	18717295	0	+	0.452632	(0.42,0.455]	chrX	1596933	13	INTRON	INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000429547.5:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	3.37329	3.44994	3.52659	0.00136107	6.87022e-4	0.0141115	0.00876781
chr20	47331058	47331158	17994341	0	-	0.53	(0.49,0.53]	chr20	1525054	121	INTRON	INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.26641	3.4498949999999997	4.63338	0.0190546	9.56909e-4	0.093872	0.010724
chr22	36487383	36487480	18499381	0	-	0.515464	(0.49,0.53]	chr22	1578355	3	UTR3	UTR3:EXON_MRNA	FOXRED2	ENSG00000100350.15	ENST00000397224.9	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.26641	3.4498949999999997	4.63338	0.0190546	9.56909e-4	0.093872	0.010724
chr1	205619927	205620018	1461623	0	-	0.461538	(0.455,0.49]	chr1	147411	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.83859	3.44971	4.06083	0.00215336	3.56832e-5	0.0208395	7.81595e-4
chr1	30872125	30872224	915890	0	-	0.555556	(0.53,0.59]	chr1	95914	28	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	1.77634	3.449675	5.12301	0.025972	1.2852e-4	0.117079	0.00241206
chr1	24669122	24669215	102139	0	+	0.537634	(0.53,0.59]	chr1	12019	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1:ENST00000489130.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	1.85636	3.4496700000000002	5.04298	0.0197135	1.91383e-4	0.0983378	0.0032874
chr5	140529606	140529701	6255132	0	+	0.557895	(0.53,0.59]	chr5	487634	16	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000475148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	3.21941	3.4496700000000002	3.67993	0.00266171	3.22778e-4	0.0240332	0.0046122
chr19	11553547	11553646	17464365	0	-	0.565657	(0.53,0.59]	chr19	1462061	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5:ENST00000586120.5:ENST00000590700.5:ENST00000591912.1	protein_coding	protein_coding	protein_coding	protein_coding	15	194	2	3.15114	3.4493099999999997	3.74748	7.02205e-7	3.18224e-8	3.29747e-5	2.09992e-6
chr17	78121069	78121164	16693129	0	-	0.684211	(0.59,1]	chr17	1375229	1	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589553.5:ENST00000588087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	168	2	2.42324	3.449195	4.47515	0.0116918	3.23877e-8	0.0686664	2.13198e-6
chr12	56144042	56144132	12898437	0	+	0.588889	(0.53,0.59]	chr12	1004319	3	UTR3	UTR3:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000550515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	123	2	3.41334	3.449095	3.48485	4.1948e-6	7.74173e-7	1.3386e-4	3.56569e-5
chr16	69165405	69165471	15721848	0	+	0.469697	(0.455,0.49]	chr16	1251871	2	CDS	CDS:EXON_MRNA:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.09445	3.449025	3.8036	6.1765e-4	1.59194e-4	0.00822794	0.00263091
chr12	57694161	57694261	12904059	0	+	0.61	(0.59,1]	chr12	1005847	1	CDS_START	CDS_START:CDS:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000549897.1:ENST00000315970.12:ENST00000550848.5:ENST00000547079.5:ENST00000552787.5:ENST00000439210.6:ENST00000551285.5:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000550372.5:ENST00000389142.9:ENST00000553208.5:ENST00000550793.1:ENST00000552423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.66274	3.44902	4.2353	0.0165254	0.00482151	0.0873033	0.0365653
chr16	30068645	30068700	15628417	0	+	0.618182	(0.59,1]	chr16	1239784	1	CDS	CDS:UTR3:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566846.5:ENST00000562679.5:ENST00000564688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	612	2	3.23652	3.448795	3.66107	1.94831e-7	1.21507e-7	9.94632e-6	7.44052e-6
chr1	110021778	110021876	401923	0	+	0.326531	(0.29,0.33]	chr1	39336	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	105	2	3.15609	3.44862	3.74115	4.93138e-7	2.97386e-7	2.44547e-5	1.42127e-5
chr5	33461666	33461744	5927456	0	+	0.410256	(0.39,0.42]	chr5	464429	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000509410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	2.74829	3.448575	4.14886	0.00415881	8.96426e-4	0.0325842	0.0102618
chr4	82424560	82424660	5493716	0	-	0.29	[0,0.29]	chr4	440014	21	UTR3	UTR3:EXON_MRNA	HNRNPDL	ENSG00000152795.18	ENST00000621267.4:ENST00000614627.4:ENST00000295470.10:ENST00000507721.5:ENST00000502762.4:ENST00000349655.8:ENST00000602300.5:ENST00000630114.2:ENST00000630827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	24	2	1.93281	3.44856	4.96431	0.01348	1.20737e-4	0.0751291	0.00210079
chr18	35141047	35141144	16822724	0	+	0.484536	(0.455,0.49]	chr18	1387343	8	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	9	72	2	2.35834	3.44855	4.53876	3.329e-4	1.31171e-6	0.00472923	5.53834e-5
chr1	19251414	19251509	877486	0	-	0.578947	(0.53,0.59]	chr1	90547	1	CDS_START	CDS_START:CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000475079.1:ENST00000488681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.45844	3.4485349999999997	4.43863	0.00930921	0.00254763	0.0587563	0.0233955
chr16	16048141	16048222	15567794	0	+	0.555556	(0.53,0.59]	chr16	1232719	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.45844	3.4485349999999997	4.43863	0.00930921	0.00254763	0.0587563	0.0233955
chr17	42024184	42024282	16227806	0	+	0.581633	(0.53,0.59]	chr17	1312741	4	UTR3	UTR3:EXON_MRNA	NKIRAS2	ENSG00000168256.18	ENST00000307641.9:ENST00000485789.5:ENST00000479407.5:ENST00000393885.9:ENST00000393880.5:ENST00000393881.7:ENST00000491638.5:ENST00000449471.8:ENST00000393879.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.45844	3.4485349999999997	4.43863	0.00930921	0.00254763	0.0587563	0.0233955
chr17	81558862	81558961	16708189	0	-	0.575758	(0.53,0.59]	chr17	1377424	21	UTR3	UTR3:EXON_MRNA	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.45844	3.4485349999999997	4.43863	0.00930921	0.00254763	0.0587563	0.0233955
chr19	1925532	1925628	17194581	0	+	0.520833	(0.49,0.53]	chr19	1412505	14	UTR3	UTR3:EXON_MRNA	SCAMP4	ENSG00000227500.10	ENST00000316097.13:ENST00000409472.5:ENST00000472442.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.21702	3.4483699999999997	4.67972	0.00959574	6.94757e-4	0.0603269	0.00876781
chr17	63578469	63578548	16317431	0	+	0.443038	(0.42,0.455]	chr17	1323641	1	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.59462	3.448195	4.30177	0.0062772	7.69083e-6	0.0445415	2.20857e-4
chr20	57512591	57512671	18021695	0	-	0.45	(0.42,0.455]	chr20	1527405	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.59462	3.448195	4.30177	0.0062772	7.69083e-6	0.0445415	2.20857e-4
chr9	33624643	33624736	10236155	0	+	0.451613	(0.42,0.455]	chr9	769679	5	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	41	2	2.59462	3.448195	4.30177	0.0062772	7.69083e-6	0.0445415	2.20857e-4
chr19	46610494	46610590	17357596	0	+	0.583333	(0.53,0.59]	chr19	1440686	15	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	56	2	3.07752	3.4481599999999997	3.8188	1.54941e-4	1.40512e-4	0.0028049	0.00237235
chr1	169477584	169477670	1358222	0	-	0.476744	(0.455,0.49]	chr1	138672	6	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.53286	3.447965	4.36307	0.0282409	0.00218641	0.124386	0.0208941
chr12	122059461	122059560	13122404	0	+	0.484848	(0.455,0.49]	chr12	1024749	4	UTR3	UTR3:EXON_MRNA	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.53286	3.447965	4.36307	0.0282409	0.00218641	0.124386	0.0208941
chr6	52283349	52283406	7736794	0	-	0.45614	(0.455,0.49]	chr6	593759	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.53286	3.447965	4.36307	0.0282409	0.00218641	0.124386	0.0208941
chr2	61872457	61872522	2691369	0	-	0.415385	(0.39,0.42]	chr2	240543	1	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	3.44656	3.447895	3.44923	0.00105208	1.26334e-5	0.0123035	3.33251e-4
chr1	65411249	65411337	251438	0	+	0.454545	(0.42,0.455]	chr1	28739	1	CDS	CDS:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.03532	3.44785	4.86038	0.040947	3.34791e-4	0.163285	0.00472923
chr16	47161749	47161832	15929669	0	-	0.421687	(0.42,0.455]	chr16	1277736	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.03532	3.44785	4.86038	0.040947	3.34791e-4	0.163285	0.00472923
chr1	89713795	89713893	346887	0	+	0.459184	(0.455,0.49]	chr1	34108	12	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr11	44206923	44206959	11927210	0	+	0.472222	(0.455,0.49]	chr11	911600	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EXT2	ENSG00000151348.16	ENST00000682993.1:ENST00000684533.1:ENST00000683000.1:ENST00000533608.7:ENST00000395673.8:ENST00000684039.1:ENST00000682815.1:ENST00000682359.1:ENST00000358681.8:ENST00000683870.1:ENST00000684124.1:ENST00000343631.4:ENST00000682711.1:ENST00000683881.1:ENST00000682947.1:ENST00000683299.1:ENST00000683204.1:ENST00000528159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr11	76472747	76472840	12028115	0	+	0.462366	(0.455,0.49]	chr11	927344	3	CDS	CDS:EXON_MRNA:INTRON	EMSY	ENSG00000158636.16	ENST00000427574.6:ENST00000334736.7:ENST00000524490.5:ENST00000533972.5:ENST00000525038.5:ENST00000524767.5:ENST00000525919.5:ENST00000533248.5:ENST00000529032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr15	41748733	41748830	14888748	0	+	0.463918	(0.455,0.49]	chr15	1169749	2	CDS	CDS:UTR3:EXON_MRNA	MGA	ENSG00000174197.17	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.12:ENST00000564190.1:ENST00000566288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr3	41225412	41225492	3432471	0	+	0.4625	(0.455,0.49]	chr3	298538	2	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr6	5609710	5609807	7580927	0	-	0.463918	(0.455,0.49]	chr6	578403	6	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P37	ENSG00000218574.1	ENST00000404243.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr7	121046886	121046939	8494311	0	+	0.471698	(0.455,0.49]	chr7	648313	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6:ENST00000520801.5:ENST00000521774.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chrX	56564367	56564465	18709751	0	+	0.479592	(0.455,0.49]	chrX	1596564	5	CDS	CDS:EXON_MRNA	UBQLN2	ENSG00000188021.9	ENST00000338222.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.69344	3.4476649999999998	4.20189	0.0176068	0.00397662	0.0925619	0.0322851
chr2	86179480	86179551	2773155	0	-	0.43662	(0.42,0.455]	chr2	246385	1	CDS	CDS:UTR5:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000409051.6:ENST00000620815.4:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.19078	3.447645	3.70451	0.00310864	2.72131e-4	0.0274272	0.00404713
chr4	17837249	17837340	4734771	0	+	0.450549	(0.42,0.455]	chr4	392884	2	CDS	CDS:UTR3:EXON_MRNA	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	3.19078	3.447645	3.70451	0.00310864	2.72131e-4	0.0274272	0.00404713
chr5	43297001	43297083	6560235	0	-	0.487805	(0.455,0.49]	chr5	508365	1	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	3.42985	3.447645	3.46544	1.45752e-5	2.55359e-6	4.10901e-4	8.83735e-5
chr17	56891699	56891799	16608608	0	-	0.51	(0.49,0.53]	chr17	1364078	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:PRIMIRNA:INTRON	TRIM25:MIR3614	ENSG00000121060.19:ENSG00000284542.1	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000581261.1:ENST00000572021.6	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	1	18	2	2.99849	3.4475949999999997	3.8967	0.0128791	0.00630123	0.0725185	0.0445415
chr1	206593705	206593793	1464371	0	-	0.602273	(0.59,1]	chr1	147964	2	CDS	CDS:EXON_MRNA:INTRON	EIF2D	ENSG00000143486.16	ENST00000472709.6:ENST00000271764.7:ENST00000367114.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.32455	3.4474599999999995	4.57037	0.0520547	0.0054994	0.193787	0.0402071
chr17	18677359	18677458	16151634	0	+	0.59596	(0.59,1]	chr17	1302339	2	EXON_PSEUDO	EXON_PSEUDO	UBE2SP2	ENSG00000224126.2	ENST00000428091.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	2.32455	3.4474599999999995	4.57037	0.0520547	0.0054994	0.193787	0.0402071
chr19	802364	802464	17189480	0	+	0.69	(0.59,1]	chr19	1411013	24	INTRON	INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.32455	3.4474599999999995	4.57037	0.0520547	0.0054994	0.193787	0.0402071
chr2	86563413	86563479	2775195	0	-	0.727273	(0.59,1]	chr2	246531	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CHMP3:RNF103-CHMP3	ENSG00000115561.16:ENSG00000249884.8	ENST00000263856.9:ENST00000409225.2:ENST00000604011.5:ENST00000440757.2:ENST00000485465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.32455	3.4474599999999995	4.57037	0.0520547	0.0054994	0.193787	0.0402071
chr7	6463065	6463140	8664680	0	-	0.493333	(0.49,0.53]	chr7	662825	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	137	2	3.36741	3.44742	3.52743	7.08867e-6	8.83744e-8	2.27895e-4	5.03137e-6
chr13	91350890	91350972	13817787	0	+	0.426829	(0.42,0.455]	chr13	1086070	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	MIR17HG:MIR17:MIR18A:MIR19A:MIR20A:MIR19B1:MIR92A1	ENSG00000215417.13:ENSG00000284536.1:ENSG00000283815.1:ENSG00000284204.1:ENSG00000283762.1:ENSG00000284375.1:ENSG00000283705.1	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000385012.1:ENST00000362310.3:ENST00000384878.1:ENST00000362279.1:ENST00000384829.1:ENST00000385233.3	miRNA	miRNA	miRNA:lncRNA	miRNA:retained_intron:lncRNA:primary_miRNA	4	68	2	2.34191	3.447395	4.55288	0.0159091	2.12083e-8	0.0854674	1.48013e-6
chr1	15828231	15828318	70875	0	+	0.632184	(0.59,1]	chr1	8026	1	EXON_PSEUDO	EXON_PSEUDO	RP11-169K16.8	ENSG00000178715.8	ENST00000321418.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	28	2	2.5215	3.4473650000000005	4.37323	0.032241	0.00990413	0.135671	0.061536
chr19	49929204	49929299	17373403	0	+	0.610526	(0.59,1]	chr19	1443968	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATF5	ENSG00000169136.12	ENST00000595125.5:ENST00000423777.7:ENST00000600336.1:ENST00000597227.5	protein_coding	protein_coding	protein_coding	protein_coding	1	28	2	2.5215	3.4473650000000005	4.37323	0.032241	0.00990413	0.135671	0.061536
chr1	109411876	109411935	1220475	0	-	0.457627	(0.455,0.49]	chr1	119086	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5:ENST00000477897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	76	2	2.89854	3.4471249999999998	3.99571	4.22484e-4	1.8164e-7	0.00613535	9.36885e-6
chr1	231241378	231241456	752065	0	+	0.525641	(0.49,0.53]	chr1	76454	1	CDS_START	CDS_START:CDS:EXON_MRNA	GNPAT	ENSG00000116906.13	ENST00000436239.5:ENST00000366647.9:ENST00000644483.1:ENST00000416000.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.38097	3.447045	4.51312	0.0425419	0.00156636	0.167547	0.0156889
chr16	30423878	30423967	15914682	0	-	0.494382	(0.49,0.53]	chr16	1275401	4	UTR3	UTR3:EXON_MRNA	DCTPP1	ENSG00000179958.10	ENST00000319285.5:ENST00000567983.1:ENST00000678016.1:ENST00000568434.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.38097	3.447045	4.51312	0.0425419	0.00156636	0.167547	0.0156889
chr19	17567405	17567472	17254665	0	+	0.507463	(0.49,0.53]	chr19	1424444	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000600474.1:ENST00000601354.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.38097	3.447045	4.51312	0.0425419	0.00156636	0.167547	0.0156889
chr19	18030975	18031069	17256832	0	+	0.5	(0.49,0.53]	chr19	1424994	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	18	2	2.38097	3.447045	4.51312	0.0425419	0.00156636	0.167547	0.0156889
chr9	124413907	124414005	10850124	0	-	0.377551	(0.36,0.39]	chr9	821913	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1:ENST00000466951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	36	2	1.79387	3.446635	5.0994	0.00943902	4.68763e-5	0.059408999999999997	0.00107286
chr2	170966030	170966130	2206508	0	+	0.6	(0.59,1]	chr2	201862	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.44587	3.4462900000000003	4.44671	0.0105307	0.00931497	0.0644466	0.0586162
chr22	36529081	36529166	18499797	0	-	0.635294	(0.59,1]	chr22	1578487	5	UTR5	UTR5:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000455547.5:ENST00000432675.4:ENST00000496875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.44587	3.4462900000000003	4.44671	0.0105307	0.00931497	0.0644466	0.0586162
chr6	31644576	31644629	7661437	0	-	0.603774	(0.59,1]	chr6	584844	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000438149.5:ENST00000469182.1:ENST00000453833.5:ENST00000435080.5:ENST00000462682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.44587	3.4462900000000003	4.44671	0.0105307	0.00931497	0.0644466	0.0586162
chr4	82926201	82926301	5497463	0	-	0.22	[0,0.29]	chr4	440374	17	UTR3	UTR3:EXON_MRNA:INTRON	LIN54	ENSG00000189308.11	ENST00000505905.1:ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	2.16074	3.4462099999999998	4.73168	0.0222978	3.88478e-4	0.105845	0.00534839
chr18	196636	196701	16716047	0	+	0.353846	(0.33,0.36]	chr18	1379113	1	CDS	CDS:UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	49	2	2.3136	3.446145	4.57869	0.00110072	1.14009e-6	0.0119958	4.91686e-5
chr10	71851181	71851221	11563575	0	-	0.7	(0.59,1]	chr10	880033	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.6495	3.4460699999999997	4.24264	7.81438e-4	3.77126e-5	0.00927662	9.05627e-4
chr12	4301790	4301889	12704461	0	+	0.323232	(0.29,0.33]	chr12	985544	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	24	2	1.86069	3.445965	5.03124	0.021654	9.06368e-5	0.103926	0.00167558
chr17	7579895	7579981	16105710	0	+	0.581395	(0.53,0.59]	chr17	1296984	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	57	2	3.20114	3.445895	3.69065	3.04331e-4	6.63641e-5	0.00472028	0.00129398
chr7	105113333	105113432	8449891	0	+	0.272727	[0,0.29]	chr7	645368	1	UTR3	UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	3.28583	3.44584	3.6058500000000002	0.00346525	4.75429e-4	0.0293796	0.00627814
chr7	101223476	101223556	8431121	0	+	0.425	(0.42,0.455]	chr7	644157	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNHIT1	ENSG00000106400.12	ENST00000305105.3:ENST00000461205.5:ENST00000492315.5:ENST00000485387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	3.04003	3.4457649999999997	3.8515	0.0119089	7.68268e-4	0.0686664	0.00916171
chr8	20217219	20217271	9220065	0	+	0.423077	(0.42,0.455]	chr8	704721	1	CDS	CDS:EXON_MRNA	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	3.04003	3.4457649999999997	3.8515	0.0119089	7.68268e-4	0.0686664	0.00916171
chr17	82624190	82624290	16713309	0	-	0.4	(0.39,0.42]	chr17	1378787	20	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	3.22662	3.445645	3.66467	0.00257296	3.60066e-4	0.0229363	0.00544157
chr12	122218265	122218361	13588388	0	-	0.40625	(0.39,0.42]	chr12	1070024	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-512M8.12:DIABLO:RP11-512M8.13	ENSG00000284934.2:ENSG00000184047.20:ENSG00000256861.1	ENST00000645606.1:ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000535844.1:ENST00000645569.1:ENST00000267169.11:ENST00000540535.6:ENST00000642640.1:ENST00000439489.6:ENST00000541273.6:ENST00000474004.6:ENST00000541656.6:ENST00000446652.5:ENST00000485724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	1.99911	3.445535	4.89196	0.0477207	2.62166e-4	0.17993	0.0039188
chr15	57287554	57287654	14950150	0	+	0.4	(0.39,0.42]	chr15	1174949	15	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.99911	3.445535	4.89196	0.0477207	2.62166e-4	0.17993	0.0039188
chr4	88521573	88521673	5523028	0	-	0.41	(0.39,0.42]	chr4	442326	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PYURF:PIGY	ENSG00000145337.5:ENSG00000255072.2	ENST00000273968.5:ENST00000527353.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.99911	3.445535	4.89196	0.0477207	2.62166e-4	0.17993	0.0039188
chr7	121125819	121125892	8495109	0	+	0.39726	(0.39,0.42]	chr7	648360	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.3298	3.445385	3.56097	0.00165391	6.12149e-4	0.0163614	0.00818575
chr3	155934915	155934980	3824630	0	+	0.384615	(0.36,0.39]	chr3	326225	1	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.32678	3.4453300000000002	4.56388	0.0193538	1.11774e-6	0.0943643	4.4003e-5
chr4	75793689	75793759	4892936	0	+	0.371429	(0.36,0.39]	chr4	403045	1	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.32678	3.4453300000000002	4.56388	0.0193538	1.11774e-6	0.0943643	4.4003e-5
chr17	59685586	59685660	16295509	0	+	0.418919	(0.39,0.42]	chr17	1321755	1	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472651.5:ENST00000475458.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.87247	3.4451899999999998	4.01791	1.58014e-4	4.78174e-5	0.00261731	0.00109049
chr14	77512083	77512183	14717357	0	-	0.38	(0.36,0.39]	chr14	1153348	62	UTR3	UTR3:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.85784	3.4450199999999995	4.0322	0.00588589	0.00191736	0.0427941	0.0183299
chr2	208237078	208237169	3142429	0	-	0.362637	(0.36,0.39]	chr2	277682	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000484575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.85784	3.4450199999999995	4.0322	0.00588589	0.00191736	0.0427941	0.0183299
chr2	222933222	222933280	2406259	0	+	0.37931	(0.36,0.39]	chr2	216622	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000474422.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.85784	3.4450199999999995	4.0322	0.00588589	0.00191736	0.0427941	0.0183299
chr17	59644421	59644495	16295053	0	+	0.391892	(0.39,0.42]	chr17	1321605	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	3.03794	3.445005	3.85207	1.79125e-4	1.28587e-4	0.00289872	0.00241206
chr11	118504373	118504472	12158959	0	+	0.373737	(0.36,0.39]	chr11	937104	21	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	3.1398	3.444935	3.75007	2.12157e-4	1.32191e-4	0.00329275	0.00246066
chr17	39200344	39200349	16219443	0	+	0.4	(0.39,0.42]	chr17	1310954	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.55844	3.44487	4.3313	0.0263695	0.00209984	0.117164	0.0204266
chr11	32933738	32933838	11899064	0	+	0.4	(0.39,0.42]	chr11	909001	21	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	3.20737	3.444455	3.68154	3.05414e-4	2.01212e-5	0.00442973	5.37852e-4
chr8	54522997	54523097	9833614	0	-	0.41	(0.39,0.42]	chr8	744069	3	EXON_PSEUDO	EXON_PSEUDO	SEC11B	ENSG00000226098.4	ENST00000518383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	78	2	3.38738	3.44442	3.50146	1.35138e-4	5.70179e-7	0.0025017	2.4782e-5
chr10	5785207	5785273	11352651	0	-	0.30303	(0.29,0.33]	chr10	865755	2	CDS	CDS:EXON_MRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	12	117	2	2.67192	3.444265	4.21661	2.43559e-4	1.50555e-10	0.00399705	1.9482e-8
chr3	170129165	170129262	4573909	0	-	0.474227	(0.455,0.49]	chr3	378573	6	CDS	CDS:EXON_MRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.52542	3.4442449999999996	4.36307	0.00218641	3.01597e-4	0.0208941	0.00439897
chr1	28004335	28004419	911586	0	-	0.440476	(0.42,0.455]	chr1	95349	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000495923.5:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.36247	3.444205	4.52594	0.0462889	0.00144145	0.176878	0.0147046
chr1	154237023	154237079	479793	0	+	0.428571	(0.42,0.455]	chr1	49631	1	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.36247	3.444205	4.52594	0.0462889	0.00144145	0.176878	0.0147046
chr11	57672798	57672895	11951850	0	+	0.42268	(0.42,0.455]	chr11	914646	9	UTR5	UTR5:EXON_MRNA:INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.36247	3.444205	4.52594	0.0462889	0.00144145	0.176878	0.0147046
chr12	6328848	6328941	13185941	0	-	0.430108	(0.42,0.455]	chr12	1031905	2	UTR3	UTR3:EXON_MRNA	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.36247	3.444205	4.52594	0.0462889	0.00144145	0.176878	0.0147046
chr4	145958183	145958240	5709599	0	-	0.421053	(0.42,0.455]	chr4	452075	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201314.1	ENST00000364444.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1	17	2	2.36247	3.444205	4.52594	0.0462889	0.00144145	0.176878	0.0147046
chr5	100049280	100049378	6726241	0	-	0.44898	(0.42,0.455]	chr5	517928	4	EXON_PSEUDO	EXON_PSEUDO	MTND4P35	ENSG00000270906.1	ENST00000604257.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.36247	3.444205	4.52594	0.0462889	0.00144145	0.176878	0.0147046
chr4	56448709	56448766	4848612	0	+	0.333333	(0.33,0.36]	chr4	399447	1	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3:ENST00000508554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	3.06149	3.444185	3.82688	2.51517e-4	6.67671e-6	0.00412169	1.97539e-4
chr1	207770320	207770362	689974	0	+	0.47619	(0.455,0.49]	chr1	70089	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1:ENST00000636114.1:ENST00000488596.5:ENST00000490278.1:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	105	2	2.58381	3.44409	4.30437	1.27375e-4	1.20326e-8	0.00241206	9.07473e-7
chr12	6492270	6492369	13186662	0	-	0.424242	(0.42,0.455]	chr12	1032093	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA	MRPL51	ENSG00000111639.8	ENST00000229238.5:ENST00000537701.5:ENST00000543164.5:ENST00000543703.1:ENST00000543959.5:ENST00000538814.5:ENST00000540949.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	3.17433	3.44399	3.71365	3.82052e-4	2.63375e-4	0.0052929	0.00427022
chr1	114396754	114396853	1236969	0	-	0.343434	(0.33,0.36]	chr1	120945	41	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000492227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.51887	3.4438250000000004	4.36878	0.0358636	0.0021194	0.147298	0.0198008
chr3	170084707	170084798	3878308	0	+	0.340659	(0.33,0.36]	chr3	328577	8	CDS	CDS:EXON_MRNA	GPR160	ENSG00000173890.17	ENST00000355897.10	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.51887	3.4438250000000004	4.36878	0.0358636	0.0021194	0.147298	0.0198008
chr3	191448077	191448177	3979297	0	+	0.36	(0.33,0.36]	chr3	334805	221	INTRON	INTRON	RP11-197K6.1	ENSG00000223812.8	ENST00000657540.1:ENST00000439804.6:ENST00000663647.1:ENST00000668751.1:ENST00000666632.1:ENST00000664732.1:ENST00000662007.1:ENST00000641158.1:ENST00000664994.1:ENST00000669884.1:ENST00000642133.1:ENST00000656380.1:ENST00000641055.1:ENST00000662578.1:ENST00000661668.1:ENST00000658347.1:ENST00000661029.1:ENST00000651548.2:ENST00000669360.1:ENST00000653490.1:ENST00000656942.1:ENST00000666456.1:ENST00000668276.1:ENST00000671595.1:ENST00000660290.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.51887	3.4438250000000004	4.36878	0.0358636	0.0021194	0.147298	0.0198008
chr6	7610070	7610170	7032633	0	+	0.35	(0.33,0.36]	chr6	539033	13	UTR3	UTR3:EXON_MRNA	SNRNP48	ENSG00000168566.13	ENST00000342415.6	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.51887	3.4438250000000004	4.36878	0.0358636	0.0021194	0.147298	0.0198008
chr17	47221731	47221766	16248592	0	+	0.542857	(0.53,0.59]	chr17	1316203	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1:ENST00000570671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.90632	3.443735	3.98115	3.72925e-4	6.28226e-5	0.00559101	0.00124286
chrX	71300957	71301051	18730906	0	+	0.446809	(0.42,0.455]	chrX	1598445	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.91373	3.44372	3.97371	0.00892357	6.07552e-5	0.0567495	0.00121305
chr1	173857517	173857605	550322	0	+	0.5	(0.49,0.53]	chr1	58497	1	CDS	CDS:UTR3:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.15207	3.443505	3.73494	0.0189345	0.00347189	0.0934721	0.0286293
chr11	86921814	86921910	12529567	0	-	0.520833	(0.49,0.53]	chr11	972427	7	EXON_LNCRNA	EXON_LNCRNA	RP11-736K20.5	ENSG00000255471.1	ENST00000528660.1	lncRNA	lncRNA	lncRNA	lncRNA	1	19	2	3.15207	3.443505	3.73494	0.0189345	0.00347189	0.0934721	0.0286293
chr5	72194062	72194160	6027735	0	+	0.5	(0.49,0.53]	chr5	472560	3	CDS	CDS:UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12:ENST00000513526.6:ENST00000511641.2:ENST00000504492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.15207	3.443505	3.73494	0.0189345	0.00347189	0.0934721	0.0286293
chr6	105278340	105278438	7868091	0	-	0.510204	(0.49,0.53]	chr6	602713	2	CDS	CDS:EXON_MRNA	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.15207	3.443505	3.73494	0.0189345	0.00347189	0.0934721	0.0286293
chr10	124397941	124398041	11729254	0	-	0.46	(0.455,0.49]	chr10	895041	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	122	2	3.03271	3.443485	3.85426	2.54544e-6	1.03884e-7	9.68263e-5	5.7584e-6
chr18	12725531	12725600	16763577	0	+	0.304348	(0.29,0.33]	chr18	1382699	1	UTR3	UTR3:EXON_MRNA	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586587.1:ENST00000317615.11:ENST00000588824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	83	2	3.15434	3.443485	3.73263	1.82169e-5	7.06068e-8	4.99084e-4	4.14425e-6
chr8	125020783	125020875	9595580	0	+	0.434783	(0.42,0.455]	chr8	727940	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	3.03147	3.443455	3.85544	2.02875e-4	5.8615e-7	0.0034429	2.5331e-5
chr12	118033157	118033251	13567673	0	-	0.37234	(0.36,0.39]	chr12	1067733	6	UTR3	UTR3:EXON_MRNA	WSB2	ENSG00000176871.9	ENST00000315436.8:ENST00000544233.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.46176	3.4433949999999998	4.42503	0.00365867	0.00133228	0.0299719	0.0144372
chr19	47741715	47741810	17363607	0	+	0.421053	(0.42,0.455]	chr19	1441384	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EHD2	ENSG00000024422.12	ENST00000263277.8:ENST00000538399.1:ENST00000540884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	3.4231	3.443295	3.46349	0.00112541	9.0025e-4	0.0128481	0.0102618
chr2	190970604	190970702	3087781	0	-	0.428571	(0.42,0.455]	chr2	272818	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2:ENST00000361099.8:ENST00000673762.1:ENST00000540176.6:ENST00000674081.1:ENST00000674028.1:ENST00000673858.1:ENST00000423282.2:ENST00000673863.1:ENST00000673832.1:ENST00000673942.1:ENST00000673777.1:ENST00000673734.1:ENST00000409465.5:ENST00000674080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	3.4231	3.443295	3.46349	0.00112541	9.0025e-4	0.0128481	0.0102618
chr1	229304302	229304401	747033	0	+	0.282828	[0,0.29]	chr1	75889	6	UTR3	UTR3:EXON_MRNA	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.15488	3.4432799999999997	4.73168	0.0436536	3.88478e-4	0.170594	0.00534839
chr11	14514389	14514440	12282157	0	-	0.392157	(0.39,0.42]	chr11	949720	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000529524.1:ENST00000531156.5:ENST00000526443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.94917	3.44327	3.93737	0.00121791	7.80292e-5	0.0130188	0.00162998
chr7	93669825	93669909	8929517	0	-	0.511905	(0.49,0.53]	chr7	681407	1	EXON_PSEUDO	EXON_PSEUDO	AC002075.4	ENSG00000237729.2	ENST00000425207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	66	2	2.75215	3.443175	4.1342	8.79689e-4	6.96953e-7	0.0107294	2.93629e-5
chrM	2524	2622	19377164	0	+	0.510204	(0.49,0.53]	chrM	1649798	21	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	1494	15969	2	3.37754	3.4431000000000003	3.50866	1.31117e-11	1.62048e-12	2.20988e-9	3.76501e-10
chr2	84433351	84433435	2768846	0	-	0.5	(0.49,0.53]	chr2	245503	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000487809.1:ENST00000488234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.45798	3.44294	4.4279	0.00353238	0.00196987	0.029076	0.0193972
chr11	127941283	127941375	12651334	0	-	0.423913	(0.42,0.455]	chr11	982041	5	EXON_PSEUDO	EXON_PSEUDO	DNAJB6P1	ENSG00000254612.2	ENST00000526843.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	22	2	2.20599	3.4429	4.67981	0.0227797	5.38444e-4	0.105293	0.00744072
chr12	57517390	57517475	13356782	0	-	0.505882	(0.49,0.53]	chr12	1052743	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIT3	ENSG00000175197.13	ENST00000623876.2:ENST00000547303.5:ENST00000551116.5:ENST00000346473.8:ENST00000552740.5:ENST00000547526.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.94403	3.4429	3.94177	0.0104929	0.00122634	0.063428	0.0130695
chr7	65956690	65956789	8301924	0	+	0.444444	(0.42,0.455]	chr7	632922	24	UTR3	UTR3:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.20599	3.4429	4.67981	0.0227797	5.38444e-4	0.105293	0.00744072
chrX	40072640	40072738	19045118	0	-	0.5	(0.49,0.53]	chrX	1618754	4	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.94403	3.4429	3.94177	0.0104929	0.00122634	0.063428	0.0130695
chr12	56273083	56273183	13349848	0	-	0.52	(0.49,0.53]	chr12	1051003	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	3.28098	3.44287	3.60476	4.52633e-4	3.89192e-5	0.00642319	8.42006e-4
chr19	39307050	39307147	17562839	0	-	0.556701	(0.53,0.59]	chr19	1475511	6	UTR3	UTR3:EXON_MRNA	LRFN1	ENSG00000128011.5	ENST00000248668.5	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	3.33569	3.44285	3.55001	6.11776e-4	1.57373e-4	0.00818575	0.00260854
chr18	31074757	31074832	17058421	0	-	0.493333	(0.49,0.53]	chr18	1401809	2	CDS	CDS:EXON_MRNA	DSC2	ENSG00000134755.18	ENST00000251081.8:ENST00000280904.11:ENST00000648081.1:ENST00000682357.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.15044	3.44269	3.73494	0.0189345	4.32676e-4	0.0934721	0.00583708
chr18	36133237	36133316	16824903	0	+	0.443038	(0.42,0.455]	chr18	1387536	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000541190.5:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.48259	3.442675	4.40276	0.0031851	0.0017618	0.0267166	0.0180053
chr1	42178123	42178222	964189	0	-	0.424242	(0.42,0.455]	chr1	101503	17	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.85709	3.442405	4.02772	1.7179e-4	4.30844e-5	0.00279324	0.00100091
chr5	86884509	86884602	6679352	0	-	0.430108	(0.42,0.455]	chr5	515299	4	EXON_PSEUDO	EXON_PSEUDO	CTD-2161E19.1	ENSG00000242477.1	ENST00000486625.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	52	2	2.85709	3.442405	4.02772	1.7179e-4	4.30844e-5	0.00279324	0.00100091
chr11	5346261	5346353	12241559	0	-	0.391304	(0.39,0.42]	chr11	946174	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	11	99	2	2.99944	3.442275	3.88511	4.76776e-6	2.03026e-6	1.64158e-4	7.24847e-5
chr21	44145037	44145126	18139057	0	+	0.494382	(0.49,0.53]	chr21	1538839	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GATD3A	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000348499.9:ENST00000291577.11:ENST00000646873.1:ENST00000419699.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.87268	3.442195	4.01171	0.00175078	4.88513e-5	0.0180053	0.00100497
chr12	24878589	24878649	13256350	0	-	0.35	(0.33,0.36]	chr12	1038886	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	3	24	2	2.54538	3.44217	4.33896	0.00259294	0.00182033	0.0229695	0.0183913
chr21	33576576	33576666	18101450	0	+	0.255556	[0,0.29]	chr21	1534606	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000470533.5:ENST00000478183.5:ENST00000465834.5:ENST00000491794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.96069	3.4419500000000003	4.92321	0.0162003	1.17014e-4	0.0866586	0.00222617
chr1	111131454	111131554	1224086	0	-	0.43	(0.42,0.455]	chr1	119685	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000496430.6:ENST00000480600.6:ENST00000490780.5:ENST00000463682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	84	2	2.79182	3.441935	4.09205	2.81794e-4	8.17459e-8	0.00451339	4.70699e-6
chr2	112662925	112663025	2001920	0	+	0.43	(0.42,0.455]	chr2	190057	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	3.08444	3.441625	3.79881	1.65328e-4	1.49291e-5	0.0029267300000000002	3.82443e-4
chr19	11448221	11448291	17231254	0	+	0.642857	(0.59,1]	chr19	1419927	1	CDS	CDS:EXON_MRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585540.1:ENST00000586486.1:ENST00000587290.5:ENST00000590098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	137	2	3.06873	3.44142	3.81411	9.80381e-5	1.87674e-5	0.00193696	4.60644e-4
chr11	102401615	102401692	12562736	0	-	0.350649	(0.33,0.36]	chr11	974352	2	CDS	CDS:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	3.36058	3.44138	3.52218	3.66613e-5	1.6272e-7	8.83327e-4	8.5138e-6
chr16	21404908	21405001	15888080	0	-	0.526882	(0.49,0.53]	chr16	1271079	3	CDS	CDS:EXON_MRNA	NPIPB3	ENSG00000169246.16	ENST00000542817.1:ENST00000504841.6	protein_coding	protein_coding	protein_coding	protein_coding	6	82	2	2.72712	3.4413750000000003	4.15563	9.78408e-4	4.45839e-8	0.0109424	3.08459e-6
chr19	49339358	49339458	17369722	0	+	0.61	(0.59,1]	chr19	1442762	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000597852.5:ENST00000535669.6:ENST00000594743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	1.87297	3.44121	5.00945	0.0308113	0.00149725	0.130016	0.0159607
chr18	23541137	23541208	17037361	0	-	0.492958	(0.49,0.53]	chr18	1400565	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	2.59881	3.441065	4.28332	0.00338762	0.00184545	0.0288632	0.0178046
chr12	54349619	54349664	12892148	0	+	0.555556	(0.53,0.59]	chr12	1003023	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	3.05775	3.4409099999999997	3.82407	0.0179666	6.94592e-4	0.0918323	0.00846751
chr1	171568246	171568339	537378	0	+	0.376344	(0.36,0.39]	chr1	57684	1	CDS	CDS:EXON_MRNA:INTRON	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.29474	3.440555	3.58637	0.00194306	5.84377e-4	0.0185233	0.00793559
chr15	78498337	78498435	15040134	0	+	0.377551	(0.36,0.39]	chr15	1183144	3	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.29474	3.440555	3.58637	0.00194306	5.84377e-4	0.0185233	0.00793559
chr13	97467532	97467632	13858374	0	+	0.32	(0.29,0.33]	chr13	1086544	32	UTR3	UTR3:EXON_MRNA	RAP2A	ENSG00000125249.7	ENST00000245304.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	3.05818	3.44049	3.8228	3.19046e-4	1.45428e-4	0.00491578	0.00244094
chr1	35601599	35601697	938319	0	-	0.295918	(0.29,0.33]	chr1	98692	22	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.99415	3.44	4.88585	0.0333928	7.90144e-8	0.140128	4.56705e-6
chr6	159778952	159779044	8049051	0	-	0.282609	[0,0.29]	chr6	615245	6	UTR3	UTR3:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	3.28583	3.43994	3.59405	0.00346525	3.52755e-5	0.0293796	7.74074e-4
chr7	20139846	20139946	8714874	0	-	0.41	(0.39,0.42]	chr7	665363	53	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AC005062.2:MACC1	ENSG00000243004.6:ENSG00000183742.13	ENST00000435968.5:ENST00000437191.5:ENST00000428100.1:ENST00000400331.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	41	2	3.12234	3.439935	3.75753	2.04026e-4	1.28898e-4	0.00320361	0.0024153
chr11	10508708	10508803	12270804	0	-	0.421053	(0.42,0.455]	chr11	948737	5	UTR5	UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	59	564	2	2.69857	3.43977	4.18097	1.54494e-7	1e-12	9.15972e-6	2.25522e-10
chr12	56752198	56752298	13352904	0	-	0.53	(0.49,0.53]	chr12	1051947	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.13501	3.4396949999999995	4.74438	0.0287874	5.91752e-4	0.128869	0.00743488
chr1	33010031	33010130	924421	0	-	0.383838	(0.36,0.39]	chr1	97512	22	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	105	2	2.6862	3.4396750000000003	4.19315	8.18712e-5	4.19186e-9	0.00169784	3.65891e-7
chr2	20250386	20250486	2540641	0	-	0.35	(0.33,0.36]	chr2	228490	18	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.93884	3.439405	3.93997	0.00135211	9.37165e-5	0.0140654	0.00186979
chr11	27890034	27890134	12317019	0	-	0.43	(0.42,0.455]	chr11	952778	13	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	62	2	3.23839	3.43928	3.64017	2.92986e-4	3.11848e-6	0.00464297	1.04393e-4
chr12	119680325	119680424	13114515	0	+	0.585859	(0.53,0.59]	chr12	1023559	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	60	2	3.43342	3.439255	3.44509	8.93729e-5	8.31409e-5	0.00171126	0.00165837
chr7	65979450	65979502	8834570	0	-	0.519231	(0.49,0.53]	chr7	674601	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1:ENST00000478118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	86	2	3.41615	3.4392	3.46225	9.74162e-5	8.23186e-7	0.00193088	3.38873e-5
chr9	83665087	83665145	10710398	0	-	0.448276	(0.42,0.455]	chr9	810192	2	CDS	CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.63665	3.4389899999999995	4.24133	0.0048172	0.00326918	0.0365653	0.0282494
chr19	17560347	17560406	17254592	0	+	0.59322	(0.59,1]	chr19	1424434	1	CDS	CDS:EXON_MRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000600474.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.24689	3.438975	4.63106	0.00890458	0.00537945	0.0565003	0.0406564
chr2	47690980	47691069	2633793	0	-	0.573034	(0.53,0.59]	chr2	237030	4	EXON_PSEUDO	EXON_PSEUDO	AC079250.1	ENSG00000230979.3	ENST00000456046.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	159	2	3.41816	3.4389250000000002	3.45969	5.23e-7	3.76967e-7	2.57218e-5	1.73504e-5
chr17	4946627	4946685	16419505	0	-	0.568965	(0.53,0.59]	chr17	1337732	1	CDS	CDS:EXON_MRNA	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000574872.1	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	2.98881	3.438905	3.889	2.35204e-4	4.69357e-6	0.00356397	1.625e-4
chr1	111456085	111456167	407303	0	+	0.439024	(0.42,0.455]	chr1	40175	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5PB	ENSG00000116459.11	ENST00000493119.5:ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	65	2	2.90081	3.438875	3.97694	1.31286e-4	2.22686e-6	0.00226535	8.65681e-5
chr11	119044187	119044279	12626404	0	-	0.336957	(0.33,0.36]	chr11	979738	1	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.97606	3.43878	3.9015	0.00871774	9.11613e-5	0.0558165	0.00168187
chr2	43912484	43912537	2623176	0	-	0.339623	(0.33,0.36]	chr2	236135	2	CDS	CDS:UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683528.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.97606	3.43878	3.9015	0.00871774	9.11613e-5	0.0558165	0.00168187
chr3	187075999	187076097	3960065	0	+	0.530612	(0.53,0.59]	chr3	334036	3	UTR3	UTR3:EXON_MRNA	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000470633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	3.06939	3.438725	3.80806	6.54756e-4	1.65022e-4	0.00860229	0.00269147
chr6	30651270	30651370	7112017	0	+	0.51	(0.49,0.53]	chr6	545021	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	C6orf136	ENSG00000204564.12	ENST00000293604.10:ENST00000484551.1:ENST00000488383.5:ENST00000376473.9:ENST00000463794.1:ENST00000651131.1:ENST00000376471.8:ENST00000446773.6:ENST00000487873.1:ENST00000465699.5:ENST00000467801.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	3.02891	3.4386150000000004	3.84832	8.23332e-4	5.8066e-6	0.0102121	1.75335e-4
chr1	45014735	45014785	174349	0	+	0.54	(0.53,0.59]	chr1	22552	1	CDS	CDS:UTR3:EXON_MRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	3.38538	3.438485	3.49159	1.18366e-4	6.29049e-5	0.00207204	0.00135218
chr7	56101572	56101664	8827409	0	-	0.315217	(0.29,0.33]	chr7	673685	1	UTR3	UTR3:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.45373	3.4384	4.42307	0.0156405	3.04069e-6	0.084273700000000007	1.02073e-4
chr7	103472717	103472811	8962954	0	-	0.308511	(0.29,0.33]	chr7	686032	11	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.45373	3.4384	4.42307	0.0156405	3.04069e-6	0.084273700000000007	1.02073e-4
chr1	116535964	116536052	1243555	0	-	0.352273	(0.33,0.36]	chr1	121877	1	CDS	CDS:EXON_MRNA:INTRON	CD58	ENSG00000116815.16	ENST00000369489.10:ENST00000464088.5:ENST00000457047.6:ENST00000526981.1:ENST00000369487.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	3.42657	3.438355	3.45014	8.23333e-5	2.3079e-5	0.00155613	6.0378e-4
chr12	54233870	54233970	13342865	0	-	0.59	(0.53,0.59]	chr12	1049602	25	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.21316	3.43832	4.66348	0.00482336	0.00107799	0.0371856	0.0118238
chr3	14132865	14132935	3319392	0	+	0.457143	(0.455,0.49]	chr3	292065	1	CDS	CDS:UTR3:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000432444.1:ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	3.06025	3.438245	3.81624	1.55878e-4	1.48205e-4	0.00269793	0.00259387
chr6	33264840	33264900	7668886	0	-	0.416667	(0.39,0.42]	chr6	587385	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000493379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.38313	3.438185	4.49324	0.0128066	0.00108192	0.0725185	0.0124943
chr7	135616654	135616726	8553006	0	+	0.416667	(0.39,0.42]	chr7	652818	1	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.38313	3.438185	4.49324	0.0128066	0.00108192	0.0725185	0.0124943
chr12	101394279	101394377	13506200	0	-	0.346939	(0.33,0.36]	chr12	1061580	13	UTR3	UTR3:EXON_MRNA	ARL1	ENSG00000120805.14	ENST00000261636.13	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.53712	3.43804	4.33896	0.00766322	0.00182033	0.0503696	0.0183913
chr7	112784064	112784158	9013488	0	-	0.351064	(0.33,0.36]	chr7	688848	4	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.53712	3.43804	4.33896	0.00766322	0.00182033	0.0503696	0.0183913
chr5	181237566	181237666	7008945	0	-	0.58	(0.53,0.59]	chr5	537307	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000514455.5:ENST00000507756.5:ENST00000502905.5:ENST00000509148.1:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000507273.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	370	2	3.18236	3.437995	3.69363	2.82242e-8	2.016e-9	1.89073e-6	2.10919e-7
chr10	96750461	96750549	11210218	0	+	0.659091	(0.59,1]	chr10	852817	3	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	58	2	3.0542	3.43799	3.82178	0.00663549	2.76767e-4	0.0456243	0.00409634
chr22	20584358	20584425	18299173	0	+	0.522388	(0.49,0.53]	chr22	1553502	1	CDS	CDS:UTR3:EXON_MRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1:ENST00000461076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.69746	3.4379	4.17834	0.00380414	1.74561e-5	0.0317723	4.38078e-4
chr12	884839	884935	12681418	0	+	0.520833	(0.49,0.53]	chr12	984118	3	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	63	2	2.98834	3.437825	3.88731	2.39968e-4	4.40111e-6	0.00394917	1.3969e-4
chr5	72911596	72911695	6029419	0	+	0.363636	(0.36,0.39]	chr5	472817	30	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	3.41656	3.43773	3.4589	9.87237e-5	3.68577e-6	0.00194682	1.20088e-4
chr11	57718335	57718432	12395371	0	-	0.412371	(0.39,0.42]	chr11	958899	4	EXON_PSEUDO	EXON_PSEUDO	PPIAP42	ENSG00000213592.4	ENST00000530952.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	27	2	3.4261	3.437665	3.44923	0.00107164	0.00105208	0.0123035	0.0118238
chr12	46207154	46207236	13313636	0	-	0.390244	(0.39,0.42]	chr12	1043520	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	3.4261	3.437665	3.44923	0.00107164	0.00105208	0.0123035	0.0118238
chr5	97036415	97036515	6118955	0	+	0.4	(0.39,0.42]	chr5	478869	80	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.4261	3.437665	3.44923	0.00107164	0.00105208	0.0123035	0.0118238
chr3	12839348	12839426	4042187	0	-	0.564103	(0.53,0.59]	chr3	339353	1	CDS	CDS:EXON_MRNA	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	155	2	2.63327	3.43759	4.24191	1.92302e-5	2.77596e-8	4.69725e-4	2.04019e-6
chr22	16805855	16805954	18421135	0	-	0.363636	(0.36,0.39]	chr22	1569146	55	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	3.13234	3.4375850000000003	3.74283	1.50915e-5	4.41825e-6	4.23797e-4	1.39924e-4
chr19	10258221	10258278	17224470	0	+	0.614035	(0.59,1]	chr19	1418461	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000591054.5:ENST00000307422.9:ENST00000590150.5:ENST00000590669.5:ENST00000253099.11:ENST00000393733.6:ENST00000588502.5:ENST00000590702.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	3.17616	3.43738	3.6986	0.00434232	4.89626e-4	0.0339139	0.00639399
chr5	124808989	124809070	6798014	0	-	0.62963	(0.59,1]	chr5	521005	3	EXON_PSEUDO	EXON_PSEUDO	RP11-436H11.1	ENSG00000242814.2	ENST00000464124.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	57	2	3.17616	3.43738	3.6986	0.00434232	4.89626e-4	0.0339139	0.00639399
chr6	44233615	44233703	7161526	0	+	0.613636	(0.59,1]	chr6	553816	2	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding	6	136	2	3.05313	3.437355	3.82158	9.44977e-5	2.09567e-5	0.00172285	5.57049e-4
chr3	172302875	172302974	3889951	0	+	0.464646	(0.455,0.49]	chr3	329071	37	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.23479	3.437285	4.63978	0.0209335	6.94032e-4	0.101282	0.00876781
chr19	6751326	6751394	17213702	0	+	0.676471	(0.59,1]	chr19	1415998	1	UTR3	UTR3:EXON_MRNA	TRIP10	ENSG00000125733.18	ENST00000600428.5:ENST00000313244.14:ENST00000313285.12:ENST00000600677.5:ENST00000595305.5:ENST00000596758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.61074	3.43714	4.26354	0.025486	0.0134233	0.117089	0.0743429
chr1	203853699	203853799	670652	0	+	0.45	(0.42,0.455]	chr1	67653	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000638800.1:ENST00000639812.1:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.32629	3.4371050000000003	4.54792	0.0153564	9.66045e-4	0.0832114	0.0115185
chr11	61324057	61324137	12404151	0	-	0.5375	(0.53,0.59]	chr11	960243	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000540784.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000541513.2:ENST00000543162.2:ENST00000537120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	48	2	3.39416	3.437035	3.47991	0.00126006	6.7738e-5	0.013837	0.0013157
chr17	59683690	59683756	16295485	0	+	0.454545	(0.42,0.455]	chr17	1321742	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000496076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	66	2	3.13851	3.437005	3.7355	2.78182e-5	1.29688e-5	6.37204e-4	3.73168e-4
chr19	55675225	55675295	17397363	0	+	0.785714	(0.59,1]	chr19	1448951	1	UTR5	UTR5:EXON_MRNA	EPN1	ENSG00000063245.15	ENST00000270460.11:ENST00000085079.11	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	1.93269	3.436995	4.9413	0.0257004	0.00191468	0.116399	0.0190905
chr6	7338739	7338838	7587400	0	-	0.353535	(0.33,0.36]	chr6	578772	43	INTRON	INTRON	SSR1:CAGE1	ENSG00000124783.14:ENSG00000164304.16	ENST00000488834.5:ENST00000458291.6:ENST00000502583.6:ENST00000379918.8:ENST00000296742.11:ENST00000442019.6:ENST00000512086.5:ENST00000338150.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.7655	3.436935	4.10837	0.0175892	2.58508e-5	0.0918323	5.98505e-4
chr7	135660386	135660473	8553361	0	+	0.333333	(0.33,0.36]	chr7	652922	5	EXON_PSEUDO	EXON_PSEUDO	AC093107.7	ENSG00000223718.3	ENST00000422772.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.7655	3.436935	4.10837	0.0175892	2.58508e-5	0.0918323	5.98505e-4
chr15	57954506	57954605	15305099	0	-	0.363636	(0.36,0.39]	chr15	1208082	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.28639	3.43693	4.58747	0.00768469	6.55819e-4	0.050396	0.00860229
chr15	41696304	41696381	14888208	0	+	0.441558	(0.42,0.455]	chr15	1169666	4	CDS	CDS:UTR5:EXON_MRNA	MGA	ENSG00000174197.17	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.3259	3.43691	4.54792	0.0484606	9.66045e-4	0.175495	0.0115185
chr7	23312791	23312848	8724215	0	-	0.438596	(0.42,0.455]	chr7	666014	2	CDS	CDS:UTR3:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000498363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.3259	3.43691	4.54792	0.0484606	9.66045e-4	0.175495	0.0115185
chr7	129833958	129834055	9061557	0	-	0.412371	(0.39,0.42]	chr7	691964	34	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.54172	3.43651	4.3313	0.00247353	0.00209984	0.0223024	0.0204266
chrX	107649939	107650032	18813948	0	+	0.419355	(0.39,0.42]	chrX	1603303	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PRPS1	ENSG00000147224.13	ENST00000643795.2:ENST00000372418.4:ENST00000372435.10:ENST00000644642.1:ENST00000674826.1:ENST00000676092.1:ENST00000675875.1:ENST00000675353.1:ENST00000676365.1:ENST00000372428.9:ENST00000675263.1:ENST00000676322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.54172	3.43651	4.3313	0.00247353	0.00209984	0.0223024	0.0204266
chr6	34263582	34263673	7672397	0	-	0.582418	(0.53,0.59]	chr6	588025	4	EXON_PSEUDO	EXON_PSEUDO	RPL35P2	ENSG00000220583.1	ENST00000402419.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	97	2	3.06709	3.4361800000000002	3.80527	4.61614e-5	9.95548e-7	0.00106317	3.97538e-5
chr10	74122821	74122920	11575822	0	-	0.464646	(0.455,0.49]	chr10	881667	27	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.35972	3.4360150000000003	4.51231	0.0058634	1.73754e-6	0.0427941	6.36428e-5
chr1	167426448	167426548	523035	0	+	0.33	(0.29,0.33]	chr1	56157	105	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.45373	3.435925	4.41812	0.0156405	0.00162106	0.084273700000000007	0.0161179
chr10	811357	811455	11337470	0	-	0.295918	(0.29,0.33]	chr10	864510	20	UTR3	UTR3:EXON_MRNA:INTRON	LARP4B	ENSG00000107929.15	ENST00000614908.4:ENST00000316157.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.45373	3.435925	4.41812	0.0156405	0.00162106	0.084273700000000007	0.0161179
chr11	65444257	65444357	11984786	0	+	0.48	(0.455,0.49]	chr11	920390	203	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	NEAT1:MIR612	ENSG00000245532.9:ENSG00000283791.1	ENST00000501122.2:ENST00000384994.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	19	196	2	3.36691	3.4359149999999996	3.50492	1.51669e-7	6.37701e-9	8.01248e-6	5.74875e-7
chr20	50890921	50891018	18006291	0	-	0.278351	[0,0.29]	chr20	1526241	11	UTR3	UTR3:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	3.39061	3.4358750000000002	3.48114	0.00134497	1.59721e-4	0.0140037	0.00286408
chr1	183552881	183552976	598025	0	+	0.442105	(0.42,0.455]	chr1	62138	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.81175	3.435645	4.05954	0.00617886	0.00227654	0.0439741	0.0209546
chr18	57549820	57549919	17137060	0	-	0.444444	(0.42,0.455]	chr18	1407062	56	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.81175	3.435645	4.05954	0.00617886	0.00227654	0.0439741	0.0209546
chr9	94458389	94458464	10367779	0	+	0.44	(0.42,0.455]	chr9	780586	2	CDS	CDS:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.81175	3.435645	4.05954	0.00617886	0.00227654	0.0439741	0.0209546
chr9	120874555	120874641	10834335	0	-	0.546512	(0.53,0.59]	chr9	820599	1	CDS	CDS:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10:ENST00000456291.1	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	1.4721	3.43555	5.399	0.0310698	3.02387e-5	0.131335	6.78876e-4
chr2	130190608	130190691	2061219	0	+	0.518072	(0.49,0.53]	chr2	193525	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MZT2B	ENSG00000152082.15	ENST00000425361.5:ENST00000457492.5:ENST00000651060.1:ENST00000409255.1:ENST00000281871.11:ENST00000455239.1:ENST00000480182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.42954	3.43552	3.4415	0.00105489	9.98297e-4	0.0123035	0.0111246
chr22	41656967	41657032	18381644	0	+	0.507692	(0.49,0.53]	chr22	1564717	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2:ENST00000478914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.42954	3.43552	3.4415	0.00105489	9.98297e-4	0.0123035	0.0111246
chr1	205620109	205620200	1461625	0	-	0.43956	(0.42,0.455]	chr1	147411	3	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr10	811455	811553	11337471	0	-	0.428571	(0.42,0.455]	chr10	864510	21	UTR3	UTR3:EXON_MRNA:INTRON	LARP4B	ENSG00000107929.15	ENST00000614908.4:ENST00000316157.8	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr12	49004569	49004633	13322978	0	-	0.4375	(0.42,0.455]	chr12	1045347	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-386G11.12:PRKAG1	ENSG00000288710.1:ENSG00000181929.13	ENST00000683988.1:ENST00000548065.7:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551770.5:ENST00000551696.5:ENST00000550125.5:ENST00000552793.5:ENST00000548950.5:ENST00000549726.5:ENST00000551121.5:ENST00000550448.5:ENST00000552463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr12	56741505	56741576	13352784	0	-	0.422535	(0.42,0.455]	chr12	1051904	2	CDS	CDS:UTR3:EXON_MRNA	RP11-112B10.2:PRIM1	ENSG00000285625.1:ENSG00000198056.15	ENST00000647707.1:ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000549549.1:ENST00000550770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr7	6585178	6585260	8114167	0	+	0.439024	(0.42,0.455]	chr7	620467	3	CDS	CDS:EXON_MRNA	ZDHHC4	ENSG00000136247.15	ENST00000396713.6:ENST00000396707.6:ENST00000405731.7:ENST00000335965.11:ENST00000396709.5:ENST00000396706.2:ENST00000474738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr7	140335167	140335262	9107253	0	-	0.421053	(0.42,0.455]	chr7	694943	16	UTR3	UTR3:EXON_MRNA:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000473060.5:ENST00000469636.1:ENST00000498469.5:ENST00000491357.5:ENST00000485538.1:ENST00000492027.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr9	33911963	33912030	10237922	0	+	0.447761	(0.42,0.455]	chr9	769827	1	CDS	CDS:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chrX	23785756	23785856	18616112	0	+	0.44	(0.42,0.455]	chrX	1589721	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SAT1	ENSG00000130066.17	ENST00000379270.5:ENST00000379254.5:ENST00000489394.5:ENST00000474223.1:ENST00000462639.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.81137	3.435455	4.05954	0.0120386	0.00617886	0.0700876	0.0439741
chr11	14494285	14494362	12281936	0	-	0.38961	(0.36,0.39]	chr11	949673	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPB1:RP11-140L24.4	ENSG00000129083.13:ENSG00000256206.2	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5:ENST00000529866.5:ENST00000534771.1:ENST00000555531.1:ENST00000533096.5:ENST00000533533.5:ENST00000529210.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	3.17145	3.4349	3.69835	3.99865e-4	3.2708e-4	0.0054764	0.00502339
chr2	38482422	38482517	1748005	0	+	0.484211	(0.455,0.49]	chr2	169990	7	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	53	2	2.92901	3.4348099999999997	3.94061	0.00141135	2.93826e-6	0.0151901	9.91141e-5
chr1	183546151	183546244	597946	0	+	0.451613	(0.42,0.455]	chr1	62104	3	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.34191	3.4347849999999998	4.52766	0.0159091	1.58778e-6	0.0854674	5.89925e-5
chr15	27351686	27351785	14836053	0	+	0.373737	(0.36,0.39]	chr15	1164236	14	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5:ENST00000554696.5:ENST00000333743.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.44447	3.4347499999999997	4.42503	0.0364669	0.00133228	0.145024	0.0144372
chr3	155833467	155833537	4538167	0	-	0.385714	(0.36,0.39]	chr3	376002	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.44447	3.4347499999999997	4.42503	0.0364669	0.00133228	0.145024	0.0144372
chr4	145117292	145117353	5146089	0	+	0.377049	(0.36,0.39]	chr4	416353	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ABCE1	ENSG00000164163.11	ENST00000296577.9:ENST00000507193.5:ENST00000502803.5:ENST00000506506.5:ENST00000504292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.44447	3.4347499999999997	4.42503	0.0364669	0.00133228	0.145024	0.0144372
chr17	28575432	28575532	16485943	0	-	0.58	(0.53,0.59]	chr17	1347763	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5:ENST00000435638.5:ENST00000578590.1:ENST00000582381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	98	2	2.58719	3.4345350000000003	4.28188	2.07067e-4	2.5044e-7	0.00324727	1.3784e-5
chr5	138507631	138507727	6861952	0	-	0.479167	(0.455,0.49]	chr5	525116	17	UTR3	UTR3:EXON_MRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.9967	3.434515	3.87233	0.00650423	1.08465e-4	0.0454205	0.00193256
chr5	162477890	162477941	6343342	0	+	0.372549	(0.36,0.39]	chr5	493974	1	EXON_SMALL	EXON_SMALL	RNU6-164P	ENSG00000201474.1	ENST00000364604.1	snRNA	snRNA	snRNA	snRNA	10	68	2	1.72711	3.43446	5.14181	0.0097389	9.60154e-9	0.0610191	7.499e-7
chr16	58115362	58115457	15965457	0	-	0.547368	(0.53,0.59]	chr16	1280914	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CFAP20	ENSG00000070761.8	ENST00000262498.8:ENST00000562622.5:ENST00000564150.1:ENST00000562443.1:ENST00000565880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	3.1234	3.43441	3.74542	0.00390623	2.30148e-4	0.0322851	0.00352524
chr17	28553940	28554033	16485695	0	-	0.55914	(0.53,0.59]	chr17	1347682	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	3.1234	3.43441	3.74542	0.00390623	2.30148e-4	0.0322851	0.00352524
chr18	2577807	2577869	16726059	0	+	0.451613	(0.42,0.455]	chr18	1379581	2	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000575515.1:ENST00000576274.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.47379	3.434235	4.39468	0.00996858	0.00240483	0.0621728	0.0217482
chr3	196830575	196830673	3990201	0	+	0.438776	(0.42,0.455]	chr3	336202	23	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.47379	3.434235	4.39468	0.00996858	0.00240483	0.0621728	0.0217482
chr10	69189350	69189435	11094797	0	+	0.411765	(0.39,0.42]	chr10	843501	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000471069.5:ENST00000483572.5:ENST00000422378.1:ENST00000478227.5:ENST00000486661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.71912	3.43399	4.14886	0.0163125	0.00415881	0.0866586	0.0325842
chr17	50694996	50695096	16585659	0	-	0.41	(0.39,0.42]	chr17	1363220	19	UTR3	UTR3:EXON_MRNA	ANKRD40	ENSG00000154945.7	ENST00000285243.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.71912	3.43399	4.14886	0.0163125	0.00415881	0.0866586	0.0325842
chr22	40861713	40861809	18377109	0	+	0.395833	(0.39,0.42]	chr22	1563959	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	XPNPEP3	ENSG00000196236.13	ENST00000417688.5:ENST00000482652.1:ENST00000428799.1:ENST00000357137.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.71912	3.43399	4.14886	0.0163125	0.00415881	0.0866586	0.0325842
chr8	102382803	102382903	9983998	0	-	0.42	(0.39,0.42]	chr8	753395	208	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.71912	3.43399	4.14886	0.0163125	0.00415881	0.0866586	0.0325842
chr9	98085423	98085520	10759979	0	-	0.412371	(0.39,0.42]	chr9	814726	12	UTR3	UTR3:EXON_MRNA:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1:ENST00000341469.7:ENST00000342043.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.71912	3.43399	4.14886	0.0163125	0.00415881	0.0866586	0.0325842
chr12	112507621	112507721	13095556	0	+	0.44	(0.42,0.455]	chr12	1021682	19	UTR3	UTR3:EXON_MRNA	PTPN11	ENSG00000179295.18	ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.34191	3.4339250000000003	4.52594	0.0159091	0.00144145	0.0854674	0.0147046
chr3	33544697	33544769	4113763	0	-	0.444444	(0.42,0.455]	chr3	343756	1	CDS	CDS:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000635664.1:ENST00000494261.1:ENST00000480385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.34191	3.4339250000000003	4.52594	0.0159091	0.00144145	0.0854674	0.0147046
chr17	59693949	59694046	16295597	0	+	0.28866000000000003	[0,0.29]	chr17	1321774	2	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000579456.5:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	159	2	3.10218	3.4338100000000003	3.76544	5.49989e-8	5.37238e-9	3.35515e-6	4.92601e-7
chr10	42794091	42794191	11018276	0	+	0.38	(0.36,0.39]	chr10	838188	1	SS5_PROX	SS5_PROX:INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.62565	3.433795	4.24194	0.0219469	0.00276729	0.103959	0.0247437
chr17	67075681	67075780	16650687	0	-	0.363636	(0.36,0.39]	chr17	1369329	54	UTR3	UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.62565	3.433795	4.24194	0.0219469	0.00276729	0.103959	0.0247437
chr2	37100303	37100403	2597016	0	-	0.38	(0.36,0.39]	chr2	233829	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.62565	3.433795	4.24194	0.0219469	0.00276729	0.103959	0.0247437
chr4	150916677	150916738	5732040	0	-	0.377049	(0.36,0.39]	chr4	452993	2	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.62565	3.433795	4.24194	0.0219469	0.00276729	0.103959	0.0247437
chr10	46005087	46005181	11470914	0	-	0.265957	[0,0.29]	chr10	874825	1	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	3.39638	3.43363	3.47088	0.0015572	1.22724e-4	0.0165415	0.00213239
chr7	56056362	56056414	8290468	0	+	0.326923	(0.29,0.33]	chr7	631473	2	CDS	CDS:EXON_MRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000482776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	3.31653	3.43351	3.55049	0.00261621	6.15323e-4	0.0238929	0.00765848
chrX	152702062	152702157	18912177	0	+	0.294737	(0.29,0.33]	chrX	1610469	4	UTR3	UTR3:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.31653	3.43351	3.55049	0.00261621	6.15323e-4	0.0238929	0.00765848
chr7	127991001	127991056	8518350	0	+	0.563636	(0.53,0.59]	chr7	649762	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000467238.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	98	2	3.32707	3.4334800000000003	3.53989	2.9609e-5	1.62202e-6	7.34242e-4	5.99845e-5
chr17	28327091	28327191	16175266	0	+	0.45	(0.42,0.455]	chr17	1304982	4	UTR3	UTR3:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.16223	3.43337	3.70451	4.45084e-4	2.72131e-4	0.00633715	0.00404713
chr11	65997326	65997424	12423527	0	-	0.336735	(0.33,0.36]	chr11	964316	9	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.22102	3.433275	4.64553	0.00736622	6.69086e-4	0.0490627	0.00820018
chr1	21828090	21828152	890656	0	-	0.645161	(0.59,1]	chr1	92224	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	103	2	2.69604	3.4329	4.16976	6.7422e-4	4.80088e-5	0.00873562	9.91058e-4
chr1	180196454	180196550	582908	0	+	0.604167	(0.59,1]	chr1	60580	3	CDS	CDS:EXON_MRNA	QSOX1	ENSG00000116260.17	ENST00000367602.8:ENST00000367600.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.32384	3.432835	4.54183	0.0157639	0.0070583	0.0851539	0.0478044
chr1	32231114	32231196	127569	0	+	0.487805	(0.455,0.49]	chr1	15816	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	80	2	2.97919	3.432455	3.88572	8.43808e-5	4.51834e-7	0.00173269	2.03245e-5
chr19	49851328	49851428	17373139	0	+	0.84	(0.59,1]	chr19	1443843	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PTOV1	ENSG00000104960.15	ENST00000601612.5:ENST00000594151.5:ENST00000600603.5:ENST00000601638.5:ENST00000598632.5:ENST00000601501.5:ENST00000594165.5:ENST00000598325.5:ENST00000391842.5:ENST00000599732.5:ENST00000601675.5:ENST00000602040.5:ENST00000596095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	29	2	2.84944	3.4324450000000004	4.01545	0.0251889	0.0128238	0.114168	0.0719798
chr7	107211098	107211161	8983046	0	-	0.428571	(0.42,0.455]	chr7	687294	1	CDS	CDS:EXON_MRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000464542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.62346	3.4323949999999996	4.24133	0.00326918	0.00164881	0.0282494	0.0163523
chr8	29055143	29055241	9250707	0	+	0.459184	(0.455,0.49]	chr8	708711	15	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	27	2	2.35644	3.432245	4.50805	0.00555877	0.00122223	0.0405952	0.0135383
chr11	74841515	74841615	12020760	0	+	0.33	(0.29,0.33]	chr11	926732	49	UTR3	UTR3:EXON_MRNA:INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5:ENST00000527301.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.62025	3.43206	4.24387	0.00573581	0.00263476	0.0417422	0.0239118
chr12	98535435	98535534	13036732	0	+	0.373737	(0.36,0.39]	chr12	1014956	12	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	2.70772	3.4319100000000002	4.1561	1.92058e-4	2.14257e-5	0.00305488	5.67278e-4
chr12	130874662	130874733	13154844	0	+	0.408451	(0.39,0.42]	chr12	1027976	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	160	2	2.95539	3.43187	3.90835	3.02784e-6	1.81867e-9	1.12894e-4	1.78081e-7
chr14	19096503	19096602	14166238	0	+	0.515152	(0.49,0.53]	chr14	1108537	27	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	18	2	2.3044	3.431845	4.55929	0.0509448	0.00116196	0.181793	0.0130851
chr22	38716912	38717000	18367423	0	+	0.511364	(0.49,0.53]	chr22	1562652	4	CDS	CDS:UTR3:EXON_MRNA	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000418601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.3044	3.431845	4.55929	0.0509448	0.00116196	0.181793	0.0130851
chr1	156727744	156727837	1316684	0	-	0.483871	(0.455,0.49]	chr1	133933	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ISG20L2	ENSG00000143319.17	ENST00000313146.10:ENST00000368219.2:ENST00000470713.1:ENST00000469074.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.35515	3.4316	4.50805	0.0140117	0.00122223	0.0767536	0.0135383
chr10	59792221	59792320	11517221	0	-	0.373737	(0.36,0.39]	chr10	877718	36	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	3.39803	3.4314999999999998	3.46497	0.00122711	0.00105709	0.0130695	0.0123035
chr17	47845704	47845803	16573356	0	-	0.363636	(0.36,0.39]	chr17	1361460	9	UTR3	UTR3:EXON_MRNA	SP6	ENSG00000189120.5	ENST00000342234.3:ENST00000536300.2	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.39803	3.4314999999999998	3.46497	0.00122711	0.00105709	0.0130695	0.0123035
chrX	78109885	78109917	18746978	0	+	0.375	(0.36,0.39]	chrX	1599809	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000477335.5:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	3.39803	3.4314999999999998	3.46497	0.00122711	0.00105709	0.0130695	0.0123035
chr2	210433014	210433112	3145322	0	-	0.377551	(0.36,0.39]	chr2	277990	19	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.1437	3.43148	4.71926	0.0340515	5.29682e-4	0.141465	0.006804
chr1	93360539	93360639	356106	0	+	0.52	(0.49,0.53]	chr1	35143	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1:ENST00000481583.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.92082	3.431295	3.94177	0.0104929	0.00827037	0.063428	0.0534766
chr16	1314292	1314376	15486323	0	+	0.52381	(0.49,0.53]	chr16	1225651	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000473256.6:ENST00000568288.5:ENST00000567383.6:ENST00000403747.6:ENST00000568209.5:ENST00000678584.1:ENST00000562482.1:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000679082.1:ENST00000567074.6:ENST00000402301.5:ENST00000677314.1:ENST00000566775.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.92082	3.431295	3.94177	0.0104929	0.00827037	0.063428	0.0534766
chr22	16603211	16603310	18285738	0	+	0.494949	(0.49,0.53]	chr22	1551649	6	INTRON	INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	1	18	2	2.92082	3.431295	3.94177	0.0104929	0.00827037	0.063428	0.0534766
chr11	494600	494690	12226367	0	-	0.677778	(0.59,1]	chr11	943334	2	UTR3	UTR3:EXON_MRNA	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	1.96394	3.431255	4.89857	0.0453144	0.00182139	0.174798	0.0176016
chr5	138561649	138561719	6862419	0	-	0.428571	(0.42,0.455]	chr5	525212	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	79	2	3.06367	3.43124	3.79881	1.65328e-4	3.80063e-6	0.0029267300000000002	1.23404e-4
chr19	861784	861870	17189854	0	+	0.732558	(0.59,1]	chr19	1411159	2	CDS	CDS:EXON_MRNA	CFD	ENSG00000197766.8	ENST00000327726.11:ENST00000592860.2	protein_coding	protein_coding	protein_coding	protein_coding	1	30	2	2.9891200000000002	3.4312250000000004	3.87333	0.0348991	0.00823979	0.141505	0.0540283
chr16	21953355	21953423	15586710	0	+	0.529412	(0.49,0.53]	chr16	1235405	2	UTR5	UTR5:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000630839.2:ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	69	2	2.54558	3.431125	4.31667	0.0024326	1.62178e-7	0.0228485	8.48798e-6
chr6	44254905	44255005	7710360	0	-	0.56	(0.53,0.59]	chr6	591840	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC35B2	ENSG00000157593.19	ENST00000495706.1:ENST00000393810.5:ENST00000393812.4:ENST00000615337.4:ENST00000538577.5:ENST00000537814.2:ENST00000619636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	57	2	3.2401	3.43107	3.62204	4.3021e-4	5.1985e-5	0.00620274	0.00106081
chr11	118389724	118389814	12157782	0	+	0.511111	(0.49,0.53]	chr11	936917	1	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6:ENST00000545354.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.18239	3.4310549999999997	4.67972	0.024394	6.94757e-4	0.111797	0.00876781
chr19	807868	807902	17189547	0	+	0.441176	(0.42,0.455]	chr19	1411039	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	2.76546	3.431035	4.09661	2.96831e-4	2.79795e-5	0.0043341	7.07527e-4
chr2	74880416	74880492	1893314	0	+	0.539474	(0.53,0.59]	chr2	179602	3	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.56002	3.4309849999999997	4.30195	0.00634904	0.00421989	0.0446708	0.0328662
chr11	47470808	47470907	12386816	0	-	0.575758	(0.53,0.59]	chr11	956932	50	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000539455.5:ENST00000531165.5:ENST00000532048.5:ENST00000524648.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	1.90953	3.43093	4.95233	0.0517711	3.02711e-4	0.193577	0.00439897
chr19	1105221	1105280	17191439	0	+	0.542373	(0.53,0.59]	chr19	1411721	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPX4	ENSG00000167468.18	ENST00000616066.4:ENST00000354171.13:ENST00000589115.6:ENST00000611653.4:ENST00000593032.5:ENST00000588919.5:ENST00000585362.6:ENST00000622390.4:ENST00000614791.1:ENST00000587648.5:ENST00000592940.2:ENST00000587932.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	1.90953	3.43093	4.95233	0.0517711	3.02711e-4	0.193577	0.00439897
chr20	25368372	25368470	17933221	0	-	0.530612	(0.53,0.59]	chr20	1518285	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	ABHD12:PPIAP2	ENSG00000100997.20:ENSG00000227379.2	ENST00000376542.8:ENST00000339157.10:ENST00000672406.1:ENST00000672566.1:ENST00000673121.1:ENST00000471287.5:ENST00000461204.1:ENST00000414143.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	26	2	1.90953	3.43093	4.95233	0.0517711	3.02711e-4	0.193577	0.00439897
chr22	21763143	21763243	18442382	0	-	0.31	(0.29,0.33]	chr22	1572508	36	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	39	277	2	3.00335	3.430705	3.85806	3.67003e-8	2.09672e-11	2.60916e-6	3.38055e-9
chr17	42580412	42580512	16548529	0	-	0.46	(0.455,0.49]	chr17	1357432	10	UTR3	UTR3:EXON_MRNA	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.84079	3.4305950000000003	4.0204	0.00736097	0.00201021	0.0490627	0.0190112
chr6	42830073	42830172	7153370	0	+	0.484848	(0.455,0.49]	chr6	552130	17	CDS	CDS:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.84079	3.4305950000000003	4.0204	0.00736097	0.00201021	0.0490627	0.0190112
chr1	150966049	150966147	1291365	0	-	0.510204	(0.49,0.53]	chr1	128670	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	128	2	3.32485	3.4304	3.53595	2.3993e-6	1.64842e-7	9.20554e-5	8.61581e-6
chr9	83660349	83660445	10710347	0	-	0.364583	(0.36,0.39]	chr9	810178	5	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	3.34861	3.430265	3.51192	1.03824e-5	6.18144e-6	3.10912e-4	1.85036e-4
chr10	95606861	95606943	11632870	0	-	0.536585	(0.53,0.59]	chr10	885984	1	CDS	CDS:EXON_MRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.72478	3.430235	4.13569	0.00324675	2.50241e-5	0.0282494	5.82427e-4
chr2	215344778	215344871	2377237	0	+	0.548387	(0.53,0.59]	chr2	213564	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000446622.5:ENST00000426233.1:ENST00000479093.5:ENST00000467388.1:ENST00000459796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.72478	3.430235	4.13569	0.00324675	2.50241e-5	0.0282494	5.82427e-4
chr3	146515467	146515563	4498790	0	-	0.25	[0,0.29]	chr3	373829	4	UTR3	UTR3:EXON_MRNA	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	1.93716	3.430185	4.92321	0.0548436	1.17014e-4	0.189511	0.00222617
chr6	27122656	27122750	7648640	0	-	0.255319	[0,0.29]	chr6	582707	1	EXON_LNCRNA	EXON_LNCRNA	RP1-86C11.7	ENSG00000272468.1	ENST00000607175.1	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	1.93716	3.430185	4.92321	0.0548436	1.17014e-4	0.189511	0.00222617
chr17	75320424	75320481	16683207	0	-	0.473684	(0.455,0.49]	chr17	1373172	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1:ENST00000648046.1:ENST00000578961.5:ENST00000462266.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.35214	3.4300949999999997	4.50805	0.0455621	0.00122223	0.168044	0.0135383
chr7	44570817	44570877	8800157	0	-	0.483333	(0.455,0.49]	chr7	671306	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDX56	ENSG00000136271.11	ENST00000258772.10:ENST00000446987.5:ENST00000421223.5:ENST00000485367.5:ENST00000467318.5:ENST00000433257.5:ENST00000431640.5:ENST00000415758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.35214	3.4300949999999997	4.50805	0.0455621	0.00122223	0.168044	0.0135383
chr17	40300827	40300894	16224529	0	+	0.447761	(0.42,0.455]	chr17	1312156	1	CDS	CDS:EXON_MRNA	CDC6	ENSG00000094804.12	ENST00000209728.9:ENST00000649662.1:ENST00000648633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	3.31161	3.429995	3.54838	0.00186138	5.9986e-4	0.018635	0.0075062
chr8	47889082	47889152	9816688	0	-	0.442857	(0.42,0.455]	chr8	742755	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.31161	3.429995	3.54838	0.00186138	5.9986e-4	0.018635	0.0075062
chr7	6403681	6403776	8114075	0	+	0.515789	(0.49,0.53]	chr7	620430	14	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	2.74505	3.4299749999999998	4.1149	7.42129e-5	6.86525e-8	0.00156135	4.04725e-6
chr1	155659513	155659584	1310541	0	-	0.464789	(0.455,0.49]	chr1	132515	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-29H23.5:YY1AP1	ENSG00000246203.2:ENSG00000163374.20	ENST00000500626.2:ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:unprocessed_pseudogene	2	30	2	3.12843	3.429925	3.73142	0.00392855	2.35261e-4	0.0322851	0.00356397
chr15	80138106	80138201	15045409	0	+	0.357895	(0.33,0.36]	chr15	1183661	6	UTR3	UTR3:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000559157.5:ENST00000261749.11:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	3.02394	3.4299	3.83586	8.89743e-4	1.7178e-4	0.0102057	0.00302124
chr9	89311194	89311292	10349685	0	+	0.612245	(0.59,1]	chr9	778988	1	UTR5	UTR5:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.88849	3.4298349999999997	3.97118	6.26999e-4	1.3379e-4	0.00831935	0.00229039
chr3	49023072	49023172	3459344	0	+	0.52	(0.49,0.53]	chr3	301970	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFAF3	ENSG00000178057.15	ENST00000326912.8:ENST00000395458.6:ENST00000451378.2:ENST00000496152.1:ENST00000326925.11:ENST00000480392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.33324	3.429805	3.52637	0.00162947	6.68602e-4	0.0169972	0.00820018
chr6	85615146	85615243	7825801	0	-	0.298969	(0.29,0.33]	chr6	599563	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	37	2	2.57219	3.429745	4.2873	9.93325e-4	1.19649e-5	0.0111014	3.513e-4
chr9	83972035	83972112	10712906	0	-	0.571429	(0.53,0.59]	chr9	810502	3	CDS	CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5	protein_coding	protein_coding	protein_coding	protein_coding	21	262	2	3.17645	3.429725	3.683	1.22889e-7	1.15031e-8	6.68547e-6	9.55726e-7
chr3	156540834	156540933	4538640	0	-	0.444444	(0.42,0.455]	chr3	376076	14	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	3.31035	3.429665	3.54898	3.43313e-5	1.34101e-6	8.37726e-4	5.13503e-5
chr12	69601352	69601452	12943578	0	+	0.34	(0.33,0.36]	chr12	1009025	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000550653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	2.41541	3.4294700000000002	4.44353	0.00212038	3.20943e-6	0.0198025	1.17669e-4
chr9	137243071	137243167	10515405	0	+	0.645833	(0.59,1]	chr9	797249	7	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	218	2	3.18097	3.42936	3.67775	7.55011e-6	7.2677e-6	2.39086e-4	2.13055e-4
chrX	155943481	155943577	18924245	0	+	0.3125	(0.29,0.33]	chrX	1612670	15	UTR3	UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	3.23189	3.42936	3.62683	6.18968e-4	5.87177e-5	0.00822794	0.00117909
chrX	66173588	66173659	18717346	0	+	0.605634	(0.59,1]	chrX	1596958	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	89	2	2.11074	3.4293299999999998	4.74792	0.0305	1.6813e-6	0.130204	6.18007e-5
chr1	155066920	155067016	482697	0	+	0.46875	(0.455,0.49]	chr1	50432	3	CDS	CDS:EXON_MRNA:INTRON	EFNA4:RP11-540D14.8	ENSG00000243364.8:ENSG00000251246.1	ENST00000359751.8:ENST00000368409.8:ENST00000505139.1:ENST00000427683.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr1	233289060	233289157	1556698	0	-	0.463918	(0.455,0.49]	chr1	155668	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCNX2:RPS7P3	ENSG00000135749.19:ENSG00000231940.1	ENST00000258229.14:ENST00000443360.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr16	71928510	71928609	15733930	0	+	0.474747	(0.455,0.49]	chr16	1253455	8	UTR3	UTR3:EXON_MRNA	IST1	ENSG00000182149.21	ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000329908.12:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr17	37161870	37161960	16524097	0	-	0.466667	(0.455,0.49]	chr17	1352125	2	CDS	CDS:EXON_MRNA	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000618575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr5	157791702	157791799	6936045	0	-	0.463918	(0.455,0.49]	chr5	531294	1	CDS	CDS:EXON_MRNA	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000518855.5:ENST00000523908.5:ENST00000522381.1:ENST00000521047.1:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr7	4764259	4764359	8109601	0	+	0.47	(0.455,0.49]	chr7	619657	19	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr7	75533993	75534092	8859858	0	-	0.484848	(0.455,0.49]	chr7	677095	8	UTR3	UTR3:EXON_MRNA	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr8	94509687	94509771	9960195	0	-	0.464286	(0.455,0.49]	chr8	751275	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.83792	3.4291600000000004	4.0204	0.0110512	0.00736097	0.0665375	0.0490627
chr1	149853065	149853158	464868	0	+	0.55914	(0.53,0.59]	chr1	46811	1	UTR3	UTR3:EXON_MRNA	H3C15	ENSG00000203852.3	ENST00000403683.1	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.52856	3.4291400000000003	4.32972	0.00107225	7.20871e-6	0.0118238	2.30406e-4
chr12	49761603	49761703	12869256	0	+	0.47	(0.455,0.49]	chr12	999637	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000547013.1:ENST00000550040.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	45	2	2.9967	3.4291150000000004	3.86153	0.00650423	5.21014e-6	0.0454205	1.60138e-4
chr9	27327697	27327797	10616218	0	-	0.28	[0,0.29]	chr9	802805	26	UTR3	UTR3:EXON_MRNA	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.40395	3.42907	4.45419	0.0210081	0.00133426	0.101116	0.0139317
chr10	80169065	80169163	11593346	0	-	0.734694	(0.59,1]	chr10	883078	2	CDS	CDS:EXON_MRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000481805.1:ENST00000437799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	3.34171	3.428895	3.51608	0.00234977	0.00108676	0.0222173	0.0118659
chr19	12801739	12801800	17471000	0	-	0.672131	(0.59,1]	chr19	1463190	1	UTR5	UTR5:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	56	2	3.34171	3.428895	3.51608	0.00234977	0.00108676	0.0222173	0.0118659
chr17	63591627	63591725	16317570	0	+	0.44898	(0.42,0.455]	chr17	1323671	26	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	1.99701	3.4286950000000003	4.86038	0.0235036	3.34791e-4	0.111072	0.00472923
chr5	93683390	93683482	6701890	0	-	0.48913	(0.455,0.49]	chr5	516399	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	FAM172A:NPM1P27	ENSG00000113391.19:ENSG00000249353.2	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000502784.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	6	56	2	2.73862	3.4285900000000002	4.1185600000000004	1.62714e-4	2.49433e-5	0.00290162	5.8178e-4
chr1	154254835	154254890	479981	0	+	0.490909	(0.49,0.53]	chr1	49677	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.78773	3.428575	4.06942	0.00257389	3.44689e-5	0.0235767	7.57659e-4
chr11	85634181	85634279	12045153	0	+	0.346939	(0.33,0.36]	chr11	928791	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM126B	ENSG00000171204.13	ENST00000393375.5:ENST00000358867.11:ENST00000531477.5:ENST00000531718.5:ENST00000530783.5:ENST00000528361.5:ENST00000534341.1:ENST00000526822.5:ENST00000529197.1:ENST00000531274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.51797	3.428465	4.33896	0.0303594	0.00182033	0.130016	0.0183913
chr5	171863315	171863413	6978856	0	-	0.346939	(0.33,0.36]	chr5	533363	19	UTR3	UTR3:EXON_MRNA	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.51797	3.428465	4.33896	0.0303594	0.00182033	0.130016	0.0183913
chrX	48266951	48267050	18691157	0	+	0.383838	(0.36,0.39]	chrX	1593888	2	UTR3	UTR3:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.39803	3.428465	3.4589	0.00122711	9.87237e-5	0.0130695	0.00194682
chr5	131393790	131393890	6221768	0	+	0.35	(0.33,0.36]	chr5	484085	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	2.6254	3.428425	4.23145	0.00106803	1.158e-5	0.0124232	3.09867e-4
chr14	100334578	100334676	14788501	0	-	0.55102	(0.53,0.59]	chr14	1158691	9	UTR3	UTR3:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.29789	3.4282450000000004	4.5586	0.00674768	0.00161229	0.0468196	0.0169168
chr19	58545763	58545829	17413297	0	+	0.590909	(0.59,1]	chr19	1451180	1	CDS	CDS:EXON_MRNA:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.92097	3.428115	3.93526	0.0102634	1.599e-4	0.0628742	0.00263454
chr2	197409769	197409848	3106495	0	-	0.531646	(0.53,0.59]	chr2	274581	1	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.54844	3.4280999999999997	4.30776	0.00663226	0.00407289	0.0461575	0.0324137
chr6	46205909	46206007	7168178	0	+	0.530612	(0.53,0.59]	chr6	554177	13	EXON_PSEUDO	EXON_PSEUDO	ACTG1P9	ENSG00000229349.2	ENST00000457622.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	26	2	2.54844	3.4280999999999997	4.30776	0.00663226	0.00407289	0.0461575	0.0324137
chr9	35707811	35707892	10639567	0	-	0.580247	(0.53,0.59]	chr9	805037	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000495712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.54844	3.4280999999999997	4.30776	0.00663226	0.00407289	0.0461575	0.0324137
chr12	67305999	67306099	12934066	0	+	0.46	(0.455,0.49]	chr12	1008094	10	CDS	CDS:EXON_MRNA:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.52734	3.4280850000000003	4.32883	0.00792433	6.31002e-6	0.0523592	1.88287e-4
chr19	11116152	11116212	17230140	0	+	0.516667	(0.49,0.53]	chr19	1419595	2	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	109	2	2.68041	3.4280850000000003	4.17576	4.90905e-4	6.00186e-9	0.00688814	5.00105e-7
chr5	10433593	10433684	5875533	0	+	0.494505	(0.49,0.53]	chr5	462060	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	109	2	2.68041	3.4280850000000003	4.17576	4.90905e-4	6.00186e-9	0.00688814	5.00105e-7
chr1	149832896	149832996	464748	0	+	0.65	(0.59,1]	chr1	46791	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H4C14	ENSG00000270882.2	ENST00000578186.2:ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	273	2	3.42281	3.42804	3.43327	9.95105e-6	9.74111e-7	2.75382e-4	4.33921e-5
chr17	59651259	59651316	16295127	0	+	0.438596	(0.42,0.455]	chr17	1321622	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	80	2	2.16214	3.42794	4.69374	0.00696724	6.00102e-9	0.0474632	5.00105e-7
chr7	97859212	97859305	8940687	0	-	0.473118	(0.455,0.49]	chr7	682267	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	73	2	3.3605	3.427905	3.49531	0.00147278	6.08319e-7	0.0157578	2.6182e-5
chr1	32172485	32172584	127033	0	+	0.383838	(0.36,0.39]	chr1	15636	17	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	4	40	2	2.53311	3.42788	4.32265	0.00345778	6.3224e-6	0.0293796	1.88366e-4
chr11	43342553	43342653	11920008	0	+	0.37	(0.36,0.39]	chr11	910888	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.53311	3.42788	4.32265	0.00345778	6.3224e-6	0.0293796	1.88366e-4
chr15	74926765	74926861	15376331	0	-	0.4375	(0.42,0.455]	chr15	1215557	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	10	112	2	2.7447	3.427785	4.11087	7.96786e-5	1.0625e-8	0.00166095	8.18652e-7
chr6	147737348	147737448	7470633	0	+	0.36	(0.33,0.36]	chr6	571325	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SAMD5:RP11-307P5.1	ENSG00000203727.4:ENSG00000227681.5	ENST00000566741.1:ENST00000427015.1:ENST00000432506.5:ENST00000442094.5:ENST00000434985.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	22	2	2.16995	3.427775	4.6856	0.0124739	3.92435e-4	0.0713206	0.00583618
chr11	102402152	102402206	12562743	0	-	0.425926	(0.42,0.455]	chr11	974357	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	53	2	2.90616	3.4277249999999997	3.94929	0.00162359	2.78395e-6	0.0169915	9.49154e-5
chr19	896875	896969	17417059	0	-	0.574468	(0.53,0.59]	chr19	1451986	5	UTR3	UTR3:EXON_MRNA	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	131	2	3.11236	3.4276799999999996	3.743	5.75875e-6	3.26629e-7	1.90868e-4	1.54181e-5
chr6	27838046	27838142	7649621	0	-	0.645833	(0.59,1]	chr6	582816	1	CDS	CDS:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	7	162	2	3.12556	3.42737	3.72918	7.15644e-5	5.26949e-6	0.00151126	1.61486e-4
chr18	36138294	36138369	16824959	0	+	0.48	(0.455,0.49]	chr18	1387554	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	3.2935	3.426935	3.56037	5.72551e-4	3.58585e-5	0.0078026	7.84153e-4
chr21	33552315	33552414	18101180	0	+	0.535354	(0.53,0.59]	chr21	1534527	17	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	46	2	2.87264	3.426895	3.98115	0.00168899	6.28226e-5	0.0175515	0.00124286
chr5	53884620	53884717	6575900	0	-	0.546392	(0.53,0.59]	chr5	509078	8	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	3.2425	3.42676	3.61102	2.6381e-4	3.01487e-5	0.00427022	6.78876e-4
chr1	21854847	21854915	890979	0	-	0.647059	(0.59,1]	chr1	92400	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	3.34171	3.4265749999999997	3.51144	0.00234977	1.99699e-5	0.0222173	4.86327e-4
chr11	34123761	34123855	11905720	0	+	0.382979	(0.36,0.39]	chr11	909653	1	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr13	113322517	113322613	13908409	0	+	0.364583	(0.36,0.39]	chr13	1090361	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1:ENST00000471046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr14	73276184	73276282	14698743	0	-	0.387755	(0.36,0.39]	chr14	1150978	12	UTR3	UTR3:EXON_MRNA	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5:ENST00000555394.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr17	46030012	46030110	16565476	0	-	0.377551	(0.36,0.39]	chr17	1360684	2	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr2	128171204	128171284	2060306	0	+	0.3625	(0.36,0.39]	chr2	193318	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr3	130996042	130996111	3738570	0	+	0.362319	(0.36,0.39]	chr3	320221	1	CDS	CDS:EXON_MRNA	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000514654.5:ENST00000508660.5:ENST00000510774.1:ENST00000507194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr5	62390926	62390978	6611654	0	-	0.384615	(0.36,0.39]	chr5	511037	2	CDS	CDS:UTR3:EXON_MRNA	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000514605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr5	134682427	134682482	6230408	0	+	0.363636	(0.36,0.39]	chr5	485198	2	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8:ENST00000513123.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr8	129350399	129350497	10084241	0	-	0.377551	(0.36,0.39]	chr8	758164	53	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.38564	3.4263899999999996	4.46714	0.0476159	0.00155822	0.17993	0.0156889
chr2	170956497	170956559	2206409	0	+	0.467742	(0.455,0.49]	chr2	201843	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GORASP2	ENSG00000115806.13	ENST00000471559.5:ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.85172	3.4262049999999995	4.00069	0.010864	5.13615e-5	0.0643837	0.00104999
chr6	35574660	35574757	7676288	0	-	0.278351	[0,0.29]	chr6	588423	12	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	3.05908	3.426095	3.79311	1.75012e-4	1.30246e-4	0.00283967	0.00243336
chr8	18059402	18059464	9732827	0	-	0.419355	(0.39,0.42]	chr8	736293	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	3.18738	3.426025	3.66467	3.60066e-4	7.15306e-5	0.00544157	0.00137393
chr21	31701082	31701171	18211504	0	-	0.494382	(0.49,0.53]	chr21	1545338	2	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	70	2	2.91806	3.425915	3.93377	1.17657e-4	3.06483e-6	0.00206264	1.13887e-4
chr18	59345984	59346051	17142500	0	-	0.373134	(0.36,0.39]	chr18	1407629	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	120	2	3.1398	3.4257	3.7116	1.32191e-4	5.19376e-9	0.00246066	4.39595e-7
chr1	29148218	29148313	914073	0	-	0.452632	(0.42,0.455]	chr1	95607	6	UTR3	UTR3:EXON_MRNA	SRSF4	ENSG00000116350.17	ENST00000373795.7:ENST00000634348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	109	2	3.38721	3.425695	3.46418	4.77528e-6	3.00469e-7	1.64158e-4	1.43443e-5
chr11	46797804	46797886	12384062	0	-	0.47561	(0.455,0.49]	chr11	956166	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000532321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.17632	3.425695	4.67507	0.00634339	5.16001e-7	0.0446708	2.27446e-5
chr6	31635665	31635749	7115908	0	+	0.607143	(0.59,1]	chr6	545895	2	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469501.1:ENST00000487089.1:ENST00000487839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	75	2	3.27003	3.42568	3.58133	8.92036e-4	3.45884e-4	0.010856	0.00486309
chr1	193091550	193091650	631235	0	+	0.27	[0,0.29]	chr1	64151	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RO60	ENSG00000116747.13	ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.70065	3.42567	4.15069	5.07704e-4	3.7616e-5	0.00660682	9.04244e-4
chr4	41303236	41303286	5393020	0	-	0.46	(0.455,0.49]	chr4	432078	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000207481.1	ENST00000384750.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	75	733	2	3.15236	3.42562	3.69888	1.8054e-9	6.16107e-12	1.77079e-7	1.23265e-9
chr17	44206400	44206498	16557136	0	-	0.479592	(0.455,0.49]	chr17	1359090	15	UTR3	UTR3:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.3605	3.425415	3.49033	0.00147278	7.92678e-4	0.0157578	0.00933379
chr1	25402595	25402660	904198	0	-	0.492308	(0.49,0.53]	chr1	94038	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHCE	ENSG00000188672.19	ENST00000294413.13:ENST00000340849.8:ENST00000349320.7:ENST00000527747.5:ENST00000346452.8:ENST00000349438.8:ENST00000413854.5:ENST00000527187.5:ENST00000533771.1:ENST00000495048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	3.33099	3.4254	3.51981	6.88328e-4	1.59567e-4	0.00876781	0.00263091
chr8	18071320	18071351	9732962	0	-	0.419355	(0.39,0.42]	chr8	736329	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1:ENST00000637792.1:ENST00000637898.1:ENST00000637536.1:ENST00000637946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.70591	3.4253400000000003	4.14477	0.0185716	2.09513e-5	0.0932453	5.04211e-4
chrX	110173451	110173549	18820940	0	+	0.418367	(0.39,0.42]	chrX	1603939	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.70591	3.4253400000000003	4.14477	0.0185716	2.09513e-5	0.0932453	5.04211e-4
chr9	124405316	124405374	10850035	0	-	0.448276	(0.42,0.455]	chr9	821901	1	CDS	CDS:EXON_MRNA:INTRON	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	3.19078	3.42528	3.65978	0.00310864	2.09396e-5	0.0274272	5.04211e-4
chr8	17230123	17230222	9729251	0	-	0.363636	(0.36,0.39]	chr8	735884	53	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.02397	3.4250499999999997	3.82613	0.00674398	1.39565e-4	0.0461258	0.0023599
chr6	17615902	17615999	7618878	0	-	0.381443	(0.36,0.39]	chr6	580511	10	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.95056	3.42487	3.89918	1.0624e-4	9.87614e-5	0.00205241	0.00178696
chr1	93278860	93278960	1171652	0	-	0.42	(0.39,0.42]	chr1	115424	54	INTRON	INTRON	CCDC18-AS1	ENSG00000223745.8	ENST00000413606.5:ENST00000457025.5:ENST00000451302.6:ENST00000668257.1:ENST00000446528.6:ENST00000415150.5:ENST00000455474.5:ENST00000447577.5:ENST00000442860.5:ENST00000414430.5:ENST00000429859.5:ENST00000424517.3:ENST00000427669.5:ENST00000661111.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	3.32811	3.42475	3.52139	0.00182819	5.10101e-5	0.0183913	0.00104581
chr7	66958257	66958355	8307739	0	+	0.418367	(0.39,0.42]	chr7	633399	29	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.68267	3.4246499999999997	4.16663	0.00125229	1.84729e-5	0.0133064	5.02409e-4
chr2	74461274	74461374	2742880	0	-	0.61	(0.59,1]	chr2	244410	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	96	2	2.16424	3.4243249999999996	4.68441	0.0123032	2.49298e-6	0.0705839	8.66637e-5
chr15	65570090	65570146	14980089	0	+	0.321429	(0.29,0.33]	chr15	1177584	1	CDS	CDS:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.80161	3.424165	4.04672	0.00415667	1.30659e-6	0.0325842	5.01867e-5
chr17	78206960	78207011	16367949	0	+	0.568627	(0.53,0.59]	chr17	1329621	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AFMID	ENSG00000183077.15	ENST00000409257.9:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000587750.5:ENST00000589664.5:ENST00000585419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	2.68432	3.424075	4.16383	0.00659193	0.00118971	0.0454205	0.0128045
chr1	206612403	206612465	1464580	0	-	0.758065	(0.59,1]	chr1	148032	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000437518.1:ENST00000620382.4:ENST00000474408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	93	2	2.29886	3.4235949999999997	4.54833	0.00759671	5.67833e-6	0.0505607	1.72297e-4
chr21	9342510	9342609	18042659	0	+	0.515152	(0.49,0.53]	chr21	1531016	109	INTRON	INTRON	bP-21264C1.2	ENSG00000278932.4	ENST00000622961.3:ENST00000625153.3	lncRNA	lncRNA	lncRNA	lncRNA	3	47	2	2.99849	3.423405	3.84832	0.00630123	5.8066e-6	0.0445415	1.75335e-4
chr22	37244248	37244348	18503691	0	-	0.65	(0.59,1]	chr22	1578979	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAC2	ENSG00000128340.15	ENST00000249071.11:ENST00000406508.5:ENST00000405484.5:ENST00000441619.5:ENST00000469532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	39	2	2.6115	3.4234	4.2353	0.0165254	0.00584247	0.0873033	0.0422426
chr6	37170825	37170879	7136254	0	+	0.666667	(0.59,1]	chr6	549931	2	CDS	CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	9	218	2	2.70963	3.4233200000000004	4.13701	3.32163e-4	8.58243e-8	0.00506816	4.9054e-6
chr1	114727036	114727090	1239696	0	-	0.444444	(0.42,0.455]	chr1	121382	2	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.59462	3.42332	4.25202	0.0062772	1.07036e-5	0.0445415	2.92107e-4
chr15	41380858	41380954	14886256	0	+	0.427083	(0.42,0.455]	chr15	1169383	8	UTR3	UTR3:EXON_MRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.59462	3.42332	4.25202	0.0062772	1.07036e-5	0.0445415	2.92107e-4
chr11	62596009	62596107	12409395	0	-	0.489796	(0.455,0.49]	chr11	961063	1	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	1.8708	3.423025	4.97525	0.0324007	1.38474e-4	0.134751	0.00254294
chr9	112252732	112252788	10803220	0	-	0.267857	[0,0.29]	chr9	818459	2	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	3.36018	3.423	3.48582	2.60277e-5	6.14902e-6	6.68941e-4	1.8415e-4
chr2	197486675	197486767	3106759	0	-	0.369565	(0.36,0.39]	chr2	274620	2	UTR3	UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	2.85584	3.4229200000000004	3.99	1.78887e-4	6.1616e-5	0.0028962	0.00133408
chr8	58582113	58582206	9351275	0	+	0.27957	[0,0.29]	chr8	715167	5	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000523483.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	11	86	2	3.14656	3.4228899999999998	3.69922	2.61296e-5	3.08846e-8	6.71231e-4	2.04921e-6
chr16	23467489	23467589	15894378	0	-	0.47	(0.455,0.49]	chr16	1272095	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	1.96875	3.42254	4.87633	0.0480352	2.95855e-4	0.180552	0.00432147
chrX	37727635	37727725	18656805	0	+	0.466667	(0.455,0.49]	chrX	1591367	1	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	1.96875	3.42254	4.87633	0.0480352	2.95855e-4	0.180552	0.00432147
chr19	44992552	44992633	17350333	0	+	0.62963	(0.59,1]	chr19	1439402	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLPTM1	ENSG00000104853.16	ENST00000541297.6:ENST00000546079.5:ENST00000337392.10:ENST00000589347.1:ENST00000586915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.4994	3.422135	4.34487	0.0333573	0.0123678	0.137922	0.0705839
chr19	44926956	44927033	17349797	0	+	0.649351	(0.59,1]	chr19	1439276	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	APOC1P1	ENSG00000214855.9	ENST00000507983.7:ENST00000575148.5:ENST00000589081.1:ENST00000574565.1:ENST00000571466.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	27	2	2.39747	3.4220900000000003	4.44671	0.0430221	0.00931497	0.161091	0.0586162
chr22	20143119	20143210	18297691	0	+	0.703297	(0.59,1]	chr22	1553267	5	CDS	CDS:EXON_MRNA	ZDHHC8	ENSG00000099904.16	ENST00000334554.12:ENST00000405930.3:ENST00000320602.11	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.39747	3.4220900000000003	4.44671	0.0430221	0.00931497	0.161091	0.0586162
chr19	39834457	39834537	17563482	0	-	0.4375	(0.42,0.455]	chr19	1475725	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.7523	3.421925	4.09155	0.0153283	2.98142e-5	0.0828908	6.7355e-4
chr15	45053497	45053597	14900972	0	+	0.35	(0.33,0.36]	chr15	1171839	97	INTRON	INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.07736	3.421805	4.76625	0.0442037	3.84608e-4	0.172163	0.00531017
chr20	50584560	50584658	17816228	0	+	0.510204	(0.49,0.53]	chr20	1507152	20	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.11892	3.42176	3.7246	0.00398244	1.36405e-5	0.0322851	3.54667e-4
chr1	202752985	202753067	1451979	0	-	0.47561	(0.455,0.49]	chr1	145847	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000649929.1:ENST00000647754.1:ENST00000456180.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr12	50674473	50674551	12873928	0	+	0.461538	(0.455,0.49]	chr12	1000239	1	CDS	CDS:EXON_MRNA	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr12	124432178	124432277	13598741	0	-	0.464646	(0.455,0.49]	chr12	1071596	10	INTRON	INTRON	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000429285.6:ENST00000458234.5:ENST00000420698.5:ENST00000542927.5:ENST00000448008.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr12	132074409	132074508	13160904	0	+	0.484848	(0.455,0.49]	chr12	1028831	44	INTRON	INTRON	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000330386.7:ENST00000611739.4:ENST00000616136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr16	70482091	70482175	15998504	0	-	0.464286	(0.455,0.49]	chr16	1284829	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	COG4	ENSG00000103051.20	ENST00000564415.6:ENST00000323786.10:ENST00000530314.5:ENST00000393612.8:ENST00000674443.1:ENST00000482252.5:ENST00000526700.5:ENST00000565715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr5	71656760	71656860	6026811	0	+	0.48	(0.455,0.49]	chr5	472496	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000505435.4:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000684310.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr7	780048	780144	8093235	0	+	0.489583	(0.455,0.49]	chr7	618346	2	CDS	CDS:EXON_MRNA	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000440747.5:ENST00000403952.3:ENST00000461576.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr7	72603186	72603286	8849406	0	-	0.49	(0.455,0.49]	chr7	675297	271	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr8	21981803	21981877	9221877	0	+	0.472973	(0.455,0.49]	chr8	704961	2	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.30139	3.421565	4.54174	0.0530131	0.00130137	0.195536	0.0136936
chr20	31605282	31605334	17748917	0	+	0.442308	(0.42,0.455]	chr20	1497938	1	UTR5	UTR5:EXON_MRNA	ID1	ENSG00000125968.9	ENST00000376105.4:ENST00000376112.4	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.37962	3.421555	3.46349	9.0025e-4	1.2947e-4	0.0102618	0.00242147
chr6	26123904	26123926	7647054	0	-	0.363636	(0.36,0.39]	chr6	582520	1	UTR5	UTR5:EXON_MRNA	H2BC4	ENSG00000180596.7	ENST00000314332.5:ENST00000396984.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.76749	3.4214650000000004	4.07544	0.00287858	3.61377e-5	0.0247002	8.73633e-4
chr1	150553723	150553823	468445	0	+	0.66	(0.59,1]	chr1	47450	4	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	3.05115	3.42121	3.79127	0.00103208	2.1425e-5	0.0121443	5.12077e-4
chr1	89934554	89934653	349109	0	+	0.434343	(0.42,0.455]	chr1	34169	15	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.7523	3.42105	4.0898	0.0153283	0.00698074	0.0828908	0.0473262
chr11	65281669	65281732	11983470	0	+	0.428571	(0.42,0.455]	chr11	920167	1	CDS	CDS:UTR3:EXON_MRNA	POLA2:RP11-867O8.9	ENSG00000014138.9:ENSG00000285816.1	ENST00000527850.5:ENST00000649896.1:ENST00000265465.8:ENST00000527618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.7523	3.42105	4.0898	0.0153283	0.00698074	0.0828908	0.0473262
chr11	125655320	125655416	12194915	0	+	0.447917	(0.42,0.455]	chr11	940883	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.7523	3.42105	4.0898	0.0153283	0.00698074	0.0828908	0.0473262
chr2	118106745	118106845	2023543	0	+	0.44	(0.42,0.455]	chr2	191253	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	INSIG2	ENSG00000125629.15	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5:ENST00000614681.1:ENST00000488995.1:ENST00000479999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.7523	3.42105	4.0898	0.0153283	0.00698074	0.0828908	0.0473262
chr2	177215749	177215822	2228494	0	+	0.452055	(0.42,0.455]	chr2	203371	1	CDS	CDS:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.7523	3.42105	4.0898	0.0153283	0.00698074	0.0828908	0.0473262
chr5	119514981	119515046	6178448	0	+	0.430769	(0.42,0.455]	chr5	482022	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000520244.6:ENST00000683335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.7523	3.42105	4.0898	0.0153283	0.00698074	0.0828908	0.0473262
chr9	129809341	129809412	10487088	0	+	0.492958	(0.49,0.53]	chr9	791744	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TOR1B	ENSG00000136816.16	ENST00000259339.7:ENST00000427860.1:ENST00000488169.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.05119	3.421025	4.79086	0.0360743	4.20783e-4	0.145024	0.00611538
chr11	126263719	126263817	12645141	0	-	0.561224	(0.53,0.59]	chr11	981826	9	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1	protein_coding	protein_coding	protein_coding	protein_coding	10	113	2	2.8203	3.4209750000000003	4.02165	1.52679e-5	1.81563e-6	3.90063e-4	7.32965e-5
chrX	154353000	154353078	19278004	0	-	0.551282	(0.53,0.59]	chrX	1638264	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000466325.1:ENST00000415241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	65	2	2.8006	3.420945	4.04129	0.00233666	1.5886e-6	0.0221314	5.89925e-5
chr6	53276178	53276256	7740250	0	-	0.461538	(0.455,0.49]	chr6	594363	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	146	2	2.9113	3.4208550000000004	3.93041	5.20678e-5	1.53105e-9	0.00116291	1.53537e-7
chr11	34097245	34097296	11905464	0	+	0.509804	(0.49,0.53]	chr11	909578	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000531668.1:ENST00000533562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	86	2	3.23781	3.4208499999999997	3.60389	5.17993e-5	8.75853e-7	0.00115752	3.5689000000000003e-05
chr7	44579180	44579279	8800224	0	-	0.424242	(0.42,0.455]	chr7	671335	14	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	3.12795	3.4208	3.71365	2.63375e-4	1.0291e-4	0.00427022	0.00184556
chr12	27029159	27029259	12798708	0	+	0.32	(0.29,0.33]	chr12	993859	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MED21	ENSG00000152944.9	ENST00000546323.5:ENST00000536503.5:ENST00000282892.4:ENST00000538186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	3.21455	3.42069	3.62683	0.00283988	6.18968e-4	0.0245061	0.00822794
chr2	85321675	85321774	2770127	0	-	0.323232	(0.29,0.33]	chr2	245643	38	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.38576	3.4205499999999995	4.45534	0.0439193	0.00110984	0.163572	0.0127344
chr6	32157839	32157924	7118474	0	+	0.564706	(0.53,0.59]	chr6	546933	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000495908.1:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	2.4274	3.42035	4.4133	0.00178327	4.11992e-6	0.017318	1.44702e-4
chr1	40073674	40073770	954672	0	-	0.40625	(0.39,0.42]	chr1	100850	11	UTR3	UTR3:EXON_MRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.48556	3.4203200000000002	4.35508	0.00384158	5.2004e-6	0.0320512	1.59965e-4
chr5	146157552	146157628	6891510	0	-	0.434211	(0.42,0.455]	chr5	527558	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.43733	3.420045	4.40276	0.0103896	0.0017618	0.0640167	0.0180053
chrX	118281594	118281692	18835286	0	+	0.510204	(0.49,0.53]	chrX	1604780	30	INTRON	INTRON	RP11-197B12.1	ENSG00000270619.1	ENST00000605342.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	23	283	2	1.97043	3.42002	4.86961	6.08509e-4	1e-12	0.00818575	2.25522e-10
chr13	25341128	25341227	13647968	0	+	0.393939	(0.39,0.42]	chr13	1075929	11	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	3.27904	3.420005	3.56097	6.12149e-4	3.95466e-5	0.00818575	8.52304e-4
chr14	22875054	22875149	14175051	0	+	0.621053	(0.59,1]	chr14	1110439	1	CDS	CDS:EXON_MRNA	LRP10	ENSG00000197324.9	ENST00000359591.9:ENST00000546834.5:ENST00000553002.1:ENST00000551466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	29	2	2.99438	3.419975	3.84557	0.0410704	0.00776449	0.163285	0.050813
chr16	30667541	30667622	15630741	0	+	0.691358	(0.59,1]	chr16	1240398	1	CDS	CDS:UTR3:EXON_MRNA	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000287468.5:ENST00000570170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	29	2	2.99438	3.419975	3.84557	0.0410704	0.00776449	0.163285	0.050813
chr11	77616498	77616596	12473507	0	-	0.326531	(0.29,0.33]	chr11	970289	21	UTR3	UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	120	2	2.62843	3.419915	4.2114	2.25253e-5	6.12461e-10	5.90626e-4	6.77693e-8
chr16	70523790	70523878	15729650	0	+	0.534091	(0.53,0.59]	chr16	1252866	1	UTR5	UTR5:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	3.18707	3.419635	3.6522	3.55681e-4	2.31822e-5	0.00539248	5.49766e-4
chr11	62597315	62597415	12409412	0	-	0.55	(0.53,0.59]	chr11	961075	1	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	20	2	3.02054	3.4194649999999998	3.81839	0.0184435	0.00577011	0.0945306	0.0426551
chr7	73536826	73536920	8854312	0	-	0.56383	(0.53,0.59]	chr7	675976	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCL7B	ENSG00000106635.8	ENST00000223368.7:ENST00000493671.5:ENST00000486818.5:ENST00000411832.5:ENST00000482231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.02054	3.4194649999999998	3.81839	0.0184435	0.00577011	0.0945306	0.0426551
chr21	33511320	33511389	18220404	0	-	0.507246	(0.49,0.53]	chr21	1546343	2	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.60116	3.419375	4.23759	0.0056515	0.00436474	0.0422191	0.0335517
chrX	16761355	16761454	18593539	0	+	0.343434	(0.33,0.36]	chrX	1588375	11	UTR3	UTR3:EXON_MRNA	SYAP1	ENSG00000169895.6	ENST00000380155.4	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.36959	3.4193350000000002	3.46908	0.0014168	0.00114872	0.0145694	0.0130528
chr3	9477761	9477859	3298388	0	+	0.418367	(0.39,0.42]	chr3	289609	18	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000406341.5:ENST00000407969.5:ENST00000399686.6	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.48357	3.4193249999999997	4.35508	0.00171404	5.2004e-6	0.017714	1.59965e-4
chr11	87309588	87309672	12054749	0	+	0.380952	(0.36,0.39]	chr11	929301	2	CDS	CDS:EXON_MRNA	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	3.00115	3.41905	3.83695	0.0012486	6.15027e-6	0.0137762	1.8415e-4
chr19	28461286	28461356	17525424	0	-	0.5	(0.49,0.53]	chr19	1470929	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5:ENST00000585697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	23	2	1.99044	3.41894	4.84744	0.0435903	3.70203e-4	0.170594	0.00515475
chr10	94606209	94606309	11202862	0	+	0.31	(0.29,0.33]	chr10	852111	42	INTRON	INTRON	RP11-119K6.6:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	13	2	2.59395	3.4189100000000003	4.24387	0.0249836	0.00263476	0.114013	0.0239118
chr4	94668035	94668131	4985308	0	+	0.291667	(0.29,0.33]	chr4	407482	22	UTR3	UTR3:EXON_MRNA	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000317968.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.59395	3.4189100000000003	4.24387	0.0249836	0.00263476	0.114013	0.0239118
chr11	64143666	64143766	12416912	0	-	0.46	(0.455,0.49]	chr11	962397	169	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	3.3605	3.4186050000000003	3.47671	0.0368644	0.00147278	0.145024	0.0157578
chr17	7175937	7176035	16428457	0	-	0.459184	(0.455,0.49]	chr17	1339087	11	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.3605	3.4186050000000003	3.47671	0.0368644	0.00147278	0.145024	0.0157578
chr6	53348816	53348906	7740986	0	-	0.722222	(0.59,1]	chr6	594412	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	288	2	2.5568	3.4186	4.2804	2.97285e-4	9.8661e-9	0.00470201	7.68842e-7
chr17	48058869	48058965	16253364	0	+	0.583333	(0.53,0.59]	chr17	1317132	7	CDS	CDS:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000581319.1	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.515	3.4185600000000003	4.32212	0.0292633	1.84692e-7	0.129773	9.51079e-6
chr5	178055853	178055950	6410846	0	+	0.505155	(0.49,0.53]	chr5	498581	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	FAM153CP:RP11-889L3.1	ENSG00000204677.13:ENSG00000218227.3	ENST00000652765.1:ENST00000651508.1:ENST00000652706.2:ENST00000511189.3:ENST00000652372.1:ENST00000651413.2:ENST00000651496.2:ENST00000652760.2:ENST00000651248.2:ENST00000662167.1:ENST00000652262.2:ENST00000669380.1:ENST00000652571.2:ENST00000651447.2:ENST00000651969.2:ENST00000668044.1:ENST00000663123.1:ENST00000651697.2:ENST00000652167.1:ENST00000652694.2:ENST00000663505.1:ENST00000667131.1:ENST00000651398.2:ENST00000511511.6:ENST00000506096.6:ENST00000651406.1:ENST00000652057.1:ENST00000652464.2:ENST00000511819.6:ENST00000477964.1	lncRNA	retained_intron	lncRNA:transcribed_processed_pseudogene	retained_intron:lncRNA:transcribed_processed_pseudogene	5	61	2	3.31729	3.4185499999999998	3.51981	6.88328e-4	7.87963e-6	0.00876781	2.25573e-4
chr4	52713869	52713969	4829923	0	+	0.51	(0.49,0.53]	chr4	398211	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR:LINC01618	ENSG00000226950.8:ENSG00000250302.3	ENST00000411630.7:ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2:ENST00000653147.1:ENST00000623036.1	lncRNA	lncRNA	lncRNA	lncRNA	2	31	2	3.15207	3.41853	3.68499	0.00347189	2.9991e-4	0.0286293	0.00472028
chr2	10784064	10784160	2510720	0	-	0.333333	(0.33,0.36]	chr2	226661	8	UTR3	UTR3:EXON_MRNA	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	3.00096	3.4184099999999997	3.83586	1.7178e-4	2.7944e-5	0.00302124	6.3975e-4
chr19	11447528	11447618	17231246	0	+	0.622222	(0.59,1]	chr19	1419923	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000585325.5:ENST00000592445.1:ENST00000585540.1:ENST00000586486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	339	2	2.93721	3.41837	3.89953	5.48451e-5	2.21291e-8	0.0012203	1.53732e-6
chr18	36798421	36798521	17079119	0	-	0.57	(0.53,0.59]	chr18	1403223	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5:ENST00000589049.5:ENST00000591823.5:ENST00000585635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.35511	3.41831	4.48151	0.0445399	2.61211e-6	0.172163	8.99269e-5
chr20	35279984	35280051	17952420	0	-	0.492537	(0.49,0.53]	chr20	1520667	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP4-614O4.11:EIF6	ENSG00000261582.1:ENSG00000242372.9	ENST00000444717.1:ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8:ENST00000415116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	3.23006	3.4182949999999996	3.60653	0.00253719	4.50981e-4	0.0233955	0.00605268
chr6	26032060	26032099	7646931	0	-	0.512821	(0.49,0.53]	chr6	582490	1	UTR5	UTR5:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	10	115	2	2.81776	3.418075	4.01839	4.51958e-5	2.32961e-8	9.44193e-4	1.75096e-6
chr22	39319597	39319623	18513276	0	-	0.615385	(0.59,1]	chr22	1580633	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000465618.5:ENST00000402527.5:ENST00000420536.1:ENST00000484615.5:ENST00000461967.1:ENST00000459859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	359	2	2.70495	3.4179500000000003	4.13095	9.16347e-5	6.52785e-9	0.00183615	5.34111e-7
chr22	21799011	21799069	18442749	0	-	0.448276	(0.42,0.455]	chr22	1572537	1	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.54634	3.41793	5.2895200000000004	0.0338074	3.1296e-9	0.141431	2.83747e-7
chr10	63213669	63213768	11531878	0	-	0.575758	(0.53,0.59]	chr10	878549	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JMJD1C	ENSG00000171988.19	ENST00000639129.1:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.0693	3.417815	4.76633	0.0160468	6.98999e-4	0.0860154	0.00846751
chr17	67737599	67737692	16332005	0	+	0.44086	(0.42,0.455]	chr17	1324876	2	CDS	CDS:UTR3:EXON_MRNA	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000580833.1:ENST00000577687.1:ENST00000583108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.05889	3.417775	3.77666	0.00524205	1.85215e-4	0.0399155	0.00296795
chr17	75845796	75845895	16685218	0	-	0.434343	(0.42,0.455]	chr17	1373617	2	UTR3	UTR3:EXON_MRNA	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.05889	3.417775	3.77666	0.00524205	1.85215e-4	0.0399155	0.00296795
chr10	95613965	95614063	11632946	0	-	0.530612	(0.53,0.59]	chr10	886006	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000485428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.90978	3.417755	3.92573	0.00857883	8.62301e-5	0.0552386	0.00160749
chr16	31091035	31091133	15916933	0	-	0.571429	(0.53,0.59]	chr16	1275803	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000533518.5:ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3:ENST00000394971.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	37	2	2.90978	3.417755	3.92573	0.00857883	8.62301e-5	0.0552386	0.00160749
chr2	99195572	99195605	1952295	0	+	0.484848	(0.455,0.49]	chr2	185457	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-111H13.1:MRPL30	ENSG00000241962.9:ENSG00000185414.20	ENST00000424491.5:ENST00000338148.8:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	50	2	2.15985	3.41746	4.67507	0.0128965	5.16001e-7	0.0722356	2.27446e-5
chrX	66192213	66192298	18717536	0	+	0.529412	(0.49,0.53]	chrX	1596977	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	3.14975	3.41737	3.68499	2.9991e-4	8.97896e-5	0.00472028	0.0016645
chr20	1369359	1369454	17875163	0	-	0.473684	(0.455,0.49]	chr20	1512311	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	110	2	2.78907	3.4172849999999997	4.0455	5.69593e-5	1.8756e-8	0.00126419	1.34017e-6
chr19	34368582	34368642	17300229	0	+	0.633333	(0.59,1]	chr19	1429834	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI	ENSG00000105220.17	ENST00000587384.6:ENST00000592277.5:ENST00000642240.1:ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	74	2	3.16732	3.41718	3.66704	6.16458e-4	5.6576e-4	0.00822794	0.00718071
chr1	28743301	28743399	118415	0	+	0.602041	(0.59,1]	chr1	14542	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.11894	3.41702	4.7151	0.0293157	0.00412279	0.128478	0.0325842
chr17	82571723	82571796	16384276	0	+	0.534247	(0.53,0.59]	chr17	1332713	1	CDS	CDS:EXON_MRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.0099	3.416985	3.82407	0.0179666	0.00600486	0.0918323	0.042887
chr22	41064245	41064342	18378066	0	+	0.587629	(0.53,0.59]	chr22	1564055	3	EXON_PSEUDO	EXON_PSEUDO	RP11-12M9.3	ENSG00000237214.3	ENST00000418783.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	20	2	3.0099	3.416985	3.82407	0.0179666	0.00600486	0.0918323	0.042887
chr22	42585600	42585695	18524011	0	-	0.547368	(0.53,0.59]	chr22	1581875	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	POLDIP3	ENSG00000100227.18	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000617178.4:ENST00000339677.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	20	2	3.0099	3.416985	3.82407	0.0179666	0.00600486	0.0918323	0.042887
chr6	33700443	33700513	7669976	0	-	0.571429	(0.53,0.59]	chr6	587752	1	CDS	CDS:EXON_MRNA	UQCC2	ENSG00000137288.10	ENST00000374231.8:ENST00000607484.6:ENST00000374214.3	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.0099	3.416985	3.82407	0.0179666	0.00600486	0.0918323	0.042887
chr7	100091037	100091094	8425355	0	+	0.578947	(0.53,0.59]	chr7	642466	1	CDS	CDS:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000468499.5:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.0099	3.416985	3.82407	0.0179666	0.00600486	0.0918323	0.042887
chrX	130065435	130065534	19220954	0	-	0.585859	(0.53,0.59]	chrX	1633279	16	UTR3	UTR3:EXON_MRNA	ELF4	ENSG00000102034.17	ENST00000308167.10:ENST00000335997.11:ENST00000615377.4	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.0099	3.416985	3.82407	0.0179666	0.00600486	0.0918323	0.042887
chr5	139481158	139481212	6867265	0	-	0.62963	(0.59,1]	chr5	525710	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000651565.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000515507.5:ENST00000511850.1:ENST00000503838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	1.96416	3.416965	4.86977	0.044741	0.00246014	0.166115	0.0230058
chr7	101212252	101212313	8953697	0	-	0.688525	(0.59,1]	chr7	684687	1	CDS	CDS:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000223127.8:ENST00000421736.1:ENST00000478082.5:ENST00000460475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	1.96416	3.416965	4.86977	0.044741	0.00246014	0.166115	0.0230058
chr16	30724270	30724369	15631068	0	+	0.555556	(0.53,0.59]	chr16	1240525	8	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	2.504	3.41686	4.32972	0.00279409	7.20871e-6	0.0241702	2.30406e-4
chr7	72946726	72946825	8330244	0	+	0.474747	(0.455,0.49]	chr7	634065	6	UTR3	UTR3:EXON_MRNA:INTRON	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.96139	3.41686	3.87233	2.95549e-4	1.08465e-4	0.00467597	0.00193256
chr9	127935365	127935454	10862690	0	-	0.573034	(0.53,0.59]	chr9	823212	4	UTR3	UTR3:EXON_MRNA	DPM2	ENSG00000136908.18	ENST00000314392.13:ENST00000495270.1:ENST00000470181.1:ENST00000473360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	2.504	3.41686	4.32972	0.00279409	7.20871e-6	0.0241702	2.30406e-4
chr19	38620336	38620435	17322734	0	+	0.545455	(0.53,0.59]	chr19	1434217	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000586932.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000588422.3:ENST00000592558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	3.07752	3.416835	3.75615	2.16536e-4	1.40512e-4	0.00361336	0.00237235
chr16	1320228	1320283	15486385	0	+	0.527273	(0.49,0.53]	chr16	1225657	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000568288.5:ENST00000567383.6:ENST00000403747.6:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000567074.6:ENST00000402301.5:ENST00000677314.1:ENST00000679137.1:ENST00000677987.1:ENST00000568989.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	1.93897	3.41651	4.89405	0.0151118	2.57983e-4	0.0820541	0.00419998
chr1	196726560	196726652	641350	0	+	0.347826	(0.33,0.36]	chr1	64490	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.31026	3.41646	4.52266	0.0519897	8.34989e-4	0.18423900000000001	0.0102956
chr20	57354711	57354763	17836609	0	+	0.346154	(0.33,0.36]	chr20	1508274	1	CDS	CDS:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000411894.5:ENST00000429339.5:ENST00000395840.6:ENST00000452119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.31026	3.41646	4.52266	0.0519897	8.34989e-4	0.18423900000000001	0.0102956
chr1	112701293	112701376	1231803	0	-	0.686747	(0.59,1]	chr1	120328	3	UTR3	UTR3:EXON_MRNA	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000473074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.72625	3.416405	4.10656	0.00394493	6.70075e-5	0.0322851	0.00130461
chr7	6400125	6400188	8114036	0	+	0.396825	(0.39,0.42]	chr7	620418	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000473564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	2.63229	3.41629	4.20029	7.8066e-4	1.46608e-5	0.00973486	3.77398e-4
chr18	59359087	59359144	17142640	0	-	0.578947	(0.53,0.59]	chr18	1407670	2	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	72	2	2.95367	3.4162549999999996	3.87884	1.11478e-4	3.88976e-5	0.00213212	8.42006e-4
chr11	2396954	2397043	11764983	0	+	0.404494	(0.39,0.42]	chr11	900180	2	UTR3	UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000492627.5:ENST00000526072.5:ENST00000531840.1:ENST00000481687.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	149	2	3.1809	3.416235	3.65157	1.69377e-7	1.54739e-7	9.16382e-6	8.8211e-6
chr16	1993596	1993693	15490017	0	+	0.587629	(0.53,0.59]	chr16	1226582	1	UTR3	UTR3:EXON_MRNA	SYNGR3	ENSG00000127561.15	ENST00000248121.7:ENST00000618464.1	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.21941	3.416175	3.61294	0.0310038	0.00266171	0.130016	0.0240332
chr16	18318159	18318251	15874496	0	-	0.543478	(0.53,0.59]	chr16	1268641	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPIPA8:RP11-1212A22.9	ENSG00000214940.8:ENSG00000285628.1	ENST00000525596.5:ENST00000541810.5:ENST00000648391.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	21	2	3.21941	3.416175	3.61294	0.0310038	0.00266171	0.130016	0.0240332
chrX	141905507	141905607	18883521	0	+	0.58	(0.53,0.59]	chrX	1608997	2	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	3.21941	3.416175	3.61294	0.0310038	0.00266171	0.130016	0.0240332
chr7	113117498	113117578	9015333	0	-	0.475	(0.455,0.49]	chr7	688973	1	CDS_START	CDS_START:CDS:EXON_MRNA	SMIM30	ENSG00000214194.9	ENST00000397764.8:ENST00000441359.1:ENST00000413744.1:ENST00000439551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.75587	3.416125	4.07638	0.00293507	1.0208e-6	0.025146	4.50492e-5
chr19	34469607	34469704	17301283	0	+	0.309278	(0.29,0.33]	chr19	1430051	5	UTR3	UTR3:EXON_MRNA	UBA2	ENSG00000126261.13	ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	3.29722	3.415905	3.53459	1.35827e-5	9.57168e-6	3.88905e-4	2.66171e-4
chr1	23083178	23083264	97789	0	+	0.569767	(0.53,0.59]	chr1	11306	1	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	49	2	2.47	3.4156649999999997	4.36133	0.0089333	5.91026e-6	0.0567495	1.77972e-4
chr1	26281123	26281222	108919	0	+	0.575758	(0.53,0.59]	chr1	12976	1	UTR3	UTR3:EXON_MRNA	SH3BGRL3	ENSG00000142669.15	ENST00000270792.10:ENST00000319041.6	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.47	3.4156649999999997	4.36133	0.0089333	5.91026e-6	0.0567495	1.77972e-4
chr15	90966218	90966308	15439131	0	-	0.466667	(0.455,0.49]	chr15	1221335	3	UTR3	UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	91	2	3.07094	3.41566	3.76038	4.58804e-5	2.33038e-7	0.00105728	1.15307e-5
chr19	58548033	58548106	17413328	0	+	0.630137	(0.59,1]	chr19	1451196	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597423.1:ENST00000597172.5:ENST00000601150.5:ENST00000597995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	3.17616	3.415625	3.65509	0.00434232	5.95213e-4	0.0339139	0.00746384
chr19	41869030	41869080	17336878	0	+	0.72	(0.59,1]	chr19	1437280	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	481	2	3.36885	3.41555	3.46225	5.08873e-7	1.86405e-7	2.50979e-5	9.59082e-6
chr4	140366239	140366327	5676657	0	-	0.556818	(0.53,0.59]	chr4	450635	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SCOC-AS1:RPL14P3	ENSG00000196951.11:ENSG00000241923.2	ENST00000512692.7:ENST00000658255.1:ENST00000664103.1:ENST00000608178.5:ENST00000609616.1:ENST00000476715.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	57	2	2.7898	3.415545	4.04129	0.0128364	1.5886e-6	0.0719798	5.89925e-5
chr9	131198915	131199015	10496376	0	+	0.56	(0.53,0.59]	chr9	793351	18	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	88	2	1.75804	3.415235	5.07243	0.0079816	2.94063e-8	0.0527009	1.96201e-6
chr17	43015478	43015575	16550646	0	-	0.494845	(0.49,0.53]	chr17	1357992	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	99	2	2.96525	3.4149950000000002	3.86474	8.82495e-5	9.92434e-8	0.00178337	5.54432e-6
chr1	151266003	151266056	471381	0	+	0.660377	(0.59,1]	chr1	48102	1	CDS	CDS:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000476855.5:ENST00000445776.1:ENST00000491857.1:ENST00000427779.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.59461	3.414955	4.2353	0.0259455	0.0165254	0.117079	0.0873033
chr12	56597057	56597154	13351652	0	-	0.597938	(0.59,1]	chr12	1051592	16	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.59461	3.414955	4.2353	0.0259455	0.0165254	0.117079	0.0873033
chr8	93734084	93734181	9957509	0	-	0.701031	(0.59,1]	chr8	750906	7	CDS	CDS:EXON_MRNA:INTRON	RBM12B	ENSG00000183808.12	ENST00000399300.7:ENST00000520560.6:ENST00000518597.2:ENST00000517700.6:ENST00000519109.6:ENST00000520961.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.59461	3.414955	4.2353	0.0259455	0.0165254	0.117079	0.0873033
chr11	6613458	6613557	12249910	0	-	0.424242	(0.42,0.455]	chr11	946834	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	7	82	2	3.14957	3.4149000000000003	3.68023	9.82296e-5	4.64023e-7	0.00193927	2.07232e-5
chr10	58385547	58385647	11057754	0	+	0.63	(0.59,1]	chr10	841596	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TFAM	ENSG00000108064.11	ENST00000373899.3:ENST00000487519.6:ENST00000373895.7:ENST00000395377.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.28778	3.4148050000000003	4.54183	0.0556537	0.0070583	0.191528	0.0478044
chr19	2039215	2039314	17421461	0	-	0.626263	(0.59,1]	chr19	1453118	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5:ENST00000588014.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.28778	3.4148050000000003	4.54183	0.0556537	0.0070583	0.191528	0.0478044
chr19	7963732	7963807	17447948	0	-	0.653333	(0.59,1]	chr19	1458191	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5:ENST00000593807.1	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.28778	3.4148050000000003	4.54183	0.0556537	0.0070583	0.191528	0.0478044
chr8	47863487	47863577	9816420	0	-	0.377778	(0.36,0.39]	chr8	742704	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000546304.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.73394	3.414795	4.09565	0.00131831	2.81403e-5	0.0143836	6.42183e-4
chr8	60222704	60222761	9845125	0	-	0.561404	(0.53,0.59]	chr8	744876	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5:ENST00000528666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	2.05734	3.41478	4.77222	0.0167029	6.67251e-4	0.0883198	0.00867533
chr1	6592092	6592190	845354	0	-	0.510204	(0.49,0.53]	chr1	85371	15	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.16	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.75215	3.41467	4.07719	0.0074411	8.79689e-4	0.0492519	0.0107294
chr1	229602828	229602919	1543053	0	-	0.483516	(0.455,0.49]	chr1	154597	7	CDS	CDS:EXON_MRNA	TAF5L	ENSG00000135801.10	ENST00000258281.6:ENST00000366675.3	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.46624	3.4146549999999998	4.36307	0.0094145	0.00218641	0.0592633	0.0208941
chr3	41225333	41225412	3432470	0	+	0.455696	(0.455,0.49]	chr3	298538	1	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.46624	3.4146549999999998	4.36307	0.0094145	0.00218641	0.0592633	0.0208941
chr6	13625652	13625708	7605099	0	-	0.464286	(0.455,0.49]	chr6	580009	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RANBP9	ENSG00000010017.13	ENST00000011619.6:ENST00000469916.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.46624	3.4146549999999998	4.36307	0.0094145	0.00218641	0.0592633	0.0208941
chrX	37727725	37727816	18656806	0	+	0.483516	(0.455,0.49]	chrX	1591367	2	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.46624	3.4146549999999998	4.36307	0.0094145	0.00218641	0.0592633	0.0208941
chr11	119051034	119051103	12626495	0	-	0.550725	(0.53,0.59]	chr11	979791	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	96	2	2.63871	3.41463	4.19055	0.00148857	4.3974e-8	0.0159153	2.75435e-6
chr18	21865663	21865763	16779505	0	+	0.27	[0,0.29]	chr18	1384234	11	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.79116	3.4145700000000003	4.03798	0.00287618	7.64187e-5	0.0247002	0.00160163
chr19	35633935	35634019	17305901	0	+	0.702381	(0.59,1]	chr19	1431209	4	CDS	CDS:EXON_MRNA:INTRON	RBM42	ENSG00000126254.12	ENST00000588161.5:ENST00000262633.9:ENST00000592202.5:ENST00000586618.5:ENST00000589559.5:ENST00000589871.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.71222	3.4144699999999997	4.11672	0.0222273	0.00398753	0.105595	0.031888
chr4	118815450	118815542	5618782	0	-	0.641304	(0.59,1]	chr4	447692	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.71222	3.4144699999999997	4.11672	0.0222273	0.00398753	0.105595	0.031888
chrX	26749489	26749589	18623797	0	+	0.64	(0.59,1]	chrX	1590348	5	INTRON	INTRON	VENTXP1	ENSG00000259849.2	ENST00000674719.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	40	2	2.71222	3.4144699999999997	4.11672	0.0222273	0.00398753	0.105595	0.031888
chr5	146129039	146129102	6891201	0	-	0.412698	(0.39,0.42]	chr5	527482	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000508709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	30	2	1.50896	3.414325	5.31969	0.052263	2.68682e-5	0.194473	6.19143e-4
chr22	37875840	37875925	18364661	0	+	0.458824	(0.455,0.49]	chr22	1562201	1	CDS	CDS:EXON_MRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	3.09445	3.414285	3.73412	6.1765e-4	1.26741e-5	0.00822794	3.34022e-4
chr1	119031713	119031813	1250358	0	-	0.41	(0.39,0.42]	chr1	122544	6	UTR3	UTR3:EXON_MRNA	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.88836	3.4140550000000003	3.93975	0.0105893	0.0102432	0.0644466	0.062872
chr6	28154412	28154511	7105795	0	+	0.393939	(0.39,0.42]	chr6	543601	5	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.88836	3.4140550000000003	3.93975	0.0105893	0.0102432	0.0644466	0.062872
chr6	113948978	113949032	7903017	0	-	0.407407	(0.39,0.42]	chr6	605411	1	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000520746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.88836	3.4140550000000003	3.93975	0.0105893	0.0102432	0.0644466	0.062872
chr7	73574384	73574484	8854618	0	-	0.51	(0.49,0.53]	chr7	676058	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5:ENST00000465279.5:ENST00000496056.5:ENST00000469518.1:ENST00000468669.5:ENST00000458466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	77	2	2.76018	3.414025	4.06787	1.35342e-4	1.16062e-6	0.0025037	4.53337e-5
chr3	54626473	54626559	3490842	0	+	0.569767	(0.53,0.59]	chr3	305904	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	CACNA2D3:RPS15P5	ENSG00000157445.15:ENSG00000229806.1	ENST00000415676.6:ENST00000474759.6:ENST00000288197.9:ENST00000490478.5:ENST00000471363.5:ENST00000620722.4:ENST00000477024.5:ENST00000468658.1:ENST00000449885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	4	57	2	3.2780300000000002	3.41402	3.55001	6.11776e-4	4.08373e-5	0.00818575	8.76332e-4
chr11	119302343	119302442	12163772	0	+	0.353535	(0.33,0.36]	chr11	938080	27	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.6995	3.41395	4.1284	0.017838	0.00407303	0.0934844	0.0324137
chr14	28937495	28937594	14193887	0	+	0.333333	(0.33,0.36]	chr14	1112385	1	INTRON	INTRON	LINC02327:RP11-148E17.1	ENSG00000258038.6:ENSG00000258028.3	ENST00000671154.1:ENST00000656401.1:ENST00000657120.1:ENST00000551588.6:ENST00000658814.1:ENST00000657083.1:ENST00000655423.1:ENST00000664085.1:ENST00000657147.1:ENST00000665952.1:ENST00000660700.1:ENST00000550990.1:ENST00000551227.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.6995	3.41395	4.1284	0.017838	0.00407303	0.0934844	0.0324137
chr8	86560999	86561099	9457734	0	+	0.36	(0.33,0.36]	chr8	720297	27	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.6995	3.41395	4.1284	0.017838	0.00407303	0.0934844	0.0324137
chr19	808617	808689	17189558	0	+	0.694444	(0.59,1]	chr19	1411045	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	79	2	3.23348	3.4138450000000002	3.59421	0.00352837	6.47795e-5	0.0298518	0.00126536
chr5	131165205	131165277	6826855	0	-	0.736111	(0.59,1]	chr5	522086	1	UTR5	UTR5:EXON_MRNA:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000508495.5:ENST00000508488.2:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2:ENST00000504202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	391	2	2.83011	3.41371	3.99731	1.86378e-5	1.8248e-8	5.06035e-4	1.30808e-6
chr1	160313117	160313167	1328931	0	-	0.54	(0.53,0.59]	chr1	136076	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	21	2	3.20874	3.41365	3.61856	0.0303021	0.00278422	0.129773	0.0241009
chr4	88521477	88521573	5523027	0	-	0.385417	(0.36,0.39]	chr4	442325	6	UTR3	UTR3:EXON_MRNA	PYURF:PIGY	ENSG00000145337.5:ENSG00000255072.2	ENST00000273968.5:ENST00000527353.2	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.00115	3.41364	3.82613	0.0012486	1.39565e-4	0.0137762	0.0023599
chrX	48523871	48523938	18691804	0	+	0.567164	(0.53,0.59]	chrX	1594131	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	3.33569	3.41364	3.49159	1.57373e-4	6.29049e-5	0.00260854	0.00135218
chr1	40281342	40281434	153111	0	+	0.380435	(0.36,0.39]	chr1	19177	1	CDS	CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	3.33241	3.41341	3.49441	0.00193631	7.81559e-4	0.0192272	0.00927662
chr11	47630554	47630614	12388071	0	-	0.416667	(0.39,0.42]	chr11	957132	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MTCH2	ENSG00000109919.10	ENST00000539759.5:ENST00000302503.8:ENST00000525649.5:ENST00000530428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.70591	3.4132549999999995	4.1206	0.0185716	0.00597537	0.0932453	0.0428562
chr22	26560994	26561088	18327470	0	+	0.414894	(0.39,0.42]	chr22	1557407	6	EXON_PSEUDO	EXON_PSEUDO	HMGB1P10	ENSG00000213707.2	ENST00000395823.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.70591	3.4132549999999995	4.1206	0.0185716	0.00597537	0.0932453	0.0428562
chr5	78002709	78002805	6651874	0	-	0.416667	(0.39,0.42]	chr5	513893	5	UTR3	UTR3:EXON_MRNA	AP3B1	ENSG00000132842.14	ENST00000255194.11:ENST00000519295.5:ENST00000522901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.70591	3.4132549999999995	4.1206	0.0185716	0.00597537	0.0932453	0.0428562
chr5	138198198	138198280	6860957	0	-	0.390244	(0.39,0.42]	chr5	524933	1	CDS	CDS:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000471692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.70591	3.4132549999999995	4.1206	0.0185716	0.00597537	0.0932453	0.0428562
chr7	74516963	74517059	8336235	0	+	0.395833	(0.39,0.42]	chr7	635177	10	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.70591	3.4132549999999995	4.1206	0.0185716	0.00597537	0.0932453	0.0428562
chr9	92243215	92243311	10737051	0	-	0.458333	(0.455,0.49]	chr9	812251	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000375627.1:ENST00000474340.1:ENST00000684575.1:ENST00000467876.2:ENST00000473915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.63872	3.413145	4.18757	0.00510378	4.43488e-7	0.0390492	1.99826e-5
chr6	34773470	34773570	7125660	0	+	0.59	(0.53,0.59]	chr6	548389	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	115	2	3.15707	3.41311	3.66915	4.11186e-6	2.76654e-6	1.44613e-4	9.47025e-5
chr11	309172	309272	11756407	0	+	0.61	(0.59,1]	chr11	897740	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM2:RP11-326C3.17	ENSG00000185201.17:ENSG00000288681.1	ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000602569.2:ENST00000527146.1:ENST00000399815.2:ENST00000679383.1:ENST00000681211.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	290	2	3.40277	3.413045	3.42332	2.45274e-6	1.547e-6	8.5469e-5	6.35451e-5
chr11	47425120	47425179	12386623	0	-	0.474576	(0.455,0.49]	chr11	956878	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5:ENST00000527906.5:ENST00000526993.1:ENST00000531653.5:ENST00000528362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	3.09445	3.412935	3.73142	6.1765e-4	2.35261e-4	0.00822794	0.00356397
chr14	102026640	102026707	14495625	0	+	0.462687	(0.455,0.49]	chr14	1133161	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	3.09445	3.412935	3.73142	6.1765e-4	2.35261e-4	0.00822794	0.00356397
chr14	103439415	103439512	14502810	0	+	0.525773	(0.49,0.53]	chr14	1134100	7	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.70307	3.4128499999999997	4.12263	0.00591451	0.00363585	0.0427941	0.0298137
chr7	143268837	143268929	8580834	0	+	0.5	(0.49,0.53]	chr7	655602	1	UTR3	UTR3:EXON_MRNA	GSTK1	ENSG00000197448.14	ENST00000409500.7:ENST00000358406.10:ENST00000443571.6:ENST00000442394.5:ENST00000479303.1:ENST00000473649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.70307	3.4128499999999997	4.12263	0.00591451	0.00363585	0.0427941	0.0298137
chr2	128157251	128157346	2060158	0	+	0.4	(0.39,0.42]	chr2	193284	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7:ENST00000488439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.49426	3.4127799999999997	4.3313	0.0085468	0.00209984	0.0551026	0.0204266
chr14	21210824	21210923	14520514	0	-	0.353535	(0.33,0.36]	chr14	1137229	18	UTR3	UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	3.00096	3.41276	3.82456	2.7944e-5	9.91401e-6	6.3975e-4	3.00031e-4
chr14	23033463	23033563	14528836	0	-	0.55	(0.53,0.59]	chr14	1138388	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	68	2	2.34398	3.412745	4.48151	0.00143671	2.61211e-6	0.0154399	8.99269e-5
chr1	53227044	53227144	1021880	0	-	0.38	(0.36,0.39]	chr1	106072	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MAGOH	ENSG00000162385.11	ENST00000371470.8:ENST00000371466.4:ENST00000495868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	3.02315	3.4127	3.80225	8.65481e-4	1.85308e-4	0.0100741	0.00322093
chr20	50583492	50583589	17816217	0	+	0.371134	(0.36,0.39]	chr20	1507152	9	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.02315	3.4127	3.80225	8.65481e-4	1.85308e-4	0.0100741	0.00322093
chr6	149724314	149724412	8018855	0	-	0.357143	(0.33,0.36]	chr6	612716	1	UTR3	UTR3:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.13965	3.4126250000000002	4.6856	0.0297101	3.92435e-4	0.129986	0.00583618
chr8	42405747	42405842	9305666	0	+	0.442105	(0.42,0.455]	chr8	712517	4	UTR3	UTR3:EXON_MRNA	VDAC3	ENSG00000078668.14	ENST00000522572.5:ENST00000022615.9	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	2.95261	3.41247	3.87233	1.03755e-4	4.86008e-6	0.00201784	1.51731e-4
chr1	21831214	21831269	890697	0	-	0.745455	(0.59,1]	chr1	92246	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	5	118	2	3.28438	3.412405	3.54043	8.66186e-5	8.33662e-5	0.00171506	0.00161378
chr1	32327535	32327606	128466	0	+	0.492958	(0.49,0.53]	chr1	15925	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000428704.1:ENST00000472928.5:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	3.23548	3.41237	3.58926	2.76544e-4	3.32125e-5	0.00444204	7.33555e-4
chr12	16991800	16991894	12756779	0	+	0.478723	(0.455,0.49]	chr12	991478	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P16	ENSG00000213235.3	ENST00000325349.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	29	2	3.24913	3.41219	3.57525	0.00239443	5.24878e-4	0.0225356	0.00677371
chr2	10443489	10443571	2509411	0	-	0.548781	(0.53,0.59]	chr2	226491	1	CDS	CDS:EXON_MRNA	ODC1	ENSG00000115758.13	ENST00000234111.9:ENST00000405333.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.7898	3.412165	4.03453	0.0128364	4.6e-5	0.0719798	9.56296e-4
chr1	67258568	67258660	264121	0	+	0.456522	(0.455,0.49]	chr1	29505	2	CDS	CDS:UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	57	2	3.135	3.412015	3.68903	1.04065e-4	1.71879e-5	0.002022	4.32994e-4
chr1	244708639	244708738	804438	0	+	0.313131	(0.29,0.33]	chr1	80056	30	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.92065	3.4119400000000004	3.90323	0.0117842	9.15815e-5	0.0686664	0.00168607
chrX	120436493	120436591	19196124	0	-	0.295918	(0.29,0.33]	chrX	1631971	1	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.92065	3.4119400000000004	3.90323	0.0117842	9.15815e-5	0.0686664	0.00168607
chr7	45101988	45102070	8800987	0	-	0.573171	(0.53,0.59]	chr7	671539	3	CDS	CDS:EXON_MRNA	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000495973.5:ENST00000483615.1:ENST00000482482.1:ENST00000478116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.27113	3.4119349999999997	4.55274	0.0178853	0.00167999	0.0918323	0.0164993
chr9	133361832	133361928	10880429	0	-	0.552083	(0.53,0.59]	chr9	825839	5	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.27113	3.4119349999999997	4.55274	0.0178853	0.00167999	0.0918323	0.0164993
chr5	175527704	175527801	6397801	0	+	0.278351	[0,0.29]	chr5	496826	11	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	3.14071	3.41193	3.68315	4.43021e-5	3.08581e-5	0.00102532	6.91315e-4
chr11	66366191	66366231	12424308	0	-	0.55	(0.53,0.59]	chr11	964632	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.16037	3.411925	4.66348	0.0254312	0.00107799	0.117089	0.0118238
chr2	149575775	149575841	2932951	0	-	0.318182	(0.29,0.33]	chr2	260043	2	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.96089	3.4119099999999998	3.86293	5.56633e-4	5.2702e-6	0.0076748	1.61486e-4
chr5	95780338	95780425	6108354	0	+	0.436782	(0.42,0.455]	chr5	478251	2	CDS	CDS:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1:ENST00000507186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	3.2972	3.4118950000000003	3.52659	6.87022e-4	1.93851e-4	0.00876781	0.00307904
chr9	14921210	14921310	10581557	0	-	0.37	(0.36,0.39]	chr9	800961	3	EXON_LNCRNA	EXON_LNCRNA	CLCN3P1	ENSG00000232000.3	ENST00000652129.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	9	97	2	2.19449	3.4116400000000002	4.62879	0.00263771	4.66801e-10	0.0239302	5.34138e-8
chr2	74153709	74153807	2740207	0	-	0.489796	(0.455,0.49]	chr2	243880	13	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	2.82754	3.411625	3.99571	9.14797e-5	1.8164e-7	0.00183322	9.36885e-6
chrX	78029249	78029346	18746156	0	+	0.43299	(0.42,0.455]	chrX	1599741	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.91373	3.41147	3.90921	0.0121657	0.00892357	0.0701019	0.0567495
chr16	16270732	16270828	15569205	0	+	0.447917	(0.42,0.455]	chr16	1233009	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1:ENST00000576460.5:ENST00000572033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.57051	3.411265	4.25202	0.0265466	1.07036e-5	0.120071	2.92107e-4
chr8	15659506	15659576	9207729	0	+	0.428571	(0.42,0.455]	chr8	703410	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1:ENST00000511783.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	35	2	2.57051	3.411265	4.25202	0.0265466	1.07036e-5	0.120071	2.92107e-4
chr1	220254439	220254536	720582	0	+	0.453608	(0.42,0.455]	chr1	72608	10	EXON_PSEUDO	EXON_PSEUDO	MORF4L1P1	ENSG00000218283.2	ENST00000404582.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	37	2	3.10874	3.411195	3.71365	5.40397e-4	2.63375e-4	0.00688813	0.00427022
chr16	2766290	2766388	15494938	0	+	0.591837	(0.59,1]	chr16	1227802	49	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	5	103	2	2.22725	3.4111900000000004	4.59513	0.00535937	4.29216e-6	0.0406564	1.3648e-4
chr4	121818043	121818110	5626276	0	-	0.38806	(0.36,0.39]	chr4	448535	1	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	11	104	2	3.3627	3.41113	3.45956	7.24679e-6	1.23922e-7	2.31544e-4	6.72171e-6
chr4	169707066	169707166	5218058	0	+	0.47	(0.455,0.49]	chr4	420923	3	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.15985	3.4109749999999996	4.6621	0.0128965	7.84472e-4	0.0722356	0.00927662
chr9	33624273	33624365	10236151	0	+	0.5	(0.49,0.53]	chr9	769679	1	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	2.99849	3.410895	3.8233	0.00630123	1.44192e-4	0.0445415	0.00242438
chr19	40609808	40609871	17330314	0	+	0.761905	(0.59,1]	chr19	1435982	2	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8:ENST00000243562.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.19052	3.4107899999999995	4.63106	0.0237927	0.00537945	0.109413	0.0406564
chr12	112152055	112152140	13094576	0	+	0.529412	(0.49,0.53]	chr12	1021553	4	CDS	CDS:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.03065	3.410755	4.79086	0.0189484	4.20783e-4	0.0958835	0.00611538
chr1	241513657	241513713	1577537	0	-	0.482143	(0.455,0.49]	chr1	157544	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1:ENST00000497042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	3.00871	3.41073	3.81275	0.0138827	2.11527e-4	0.0760883	0.00328766
chrX	66172517	66172599	18717334	0	+	0.451219	(0.42,0.455]	chrX	1596952	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	98	2	3.31013	3.4106	3.51107	8.58184e-6	5.42418e-7	2.65793e-4	2.37553e-5
chr18	55223768	55223867	17128486	0	-	0.313131	(0.29,0.33]	chr18	1406487	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCF4	ENSG00000196628.20	ENST00000354452.8:ENST00000616053.4:ENST00000636400.2:ENST00000356073.8:ENST00000643689.1:ENST00000636751.2:ENST00000635822.2:ENST00000637115.2:ENST00000638154.3:ENST00000637239.2:ENST00000637250.2:ENST00000636822.2:ENST00000635990.2:ENST00000637923.2:ENST00000637169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.45373	3.41059	4.36745	0.0156405	4.53307e-6	0.084273700000000007	1.42727e-4
chr1	46287893	46287993	981914	0	-	0.39	(0.36,0.39]	chr1	103533	10	INTRON	INTRON	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.84089	3.41057	3.98025	0.0128123	0.00881716	0.0719798	0.0562439
chr12	93574900	93574989	13019792	0	+	0.370787	(0.36,0.39]	chr12	1013515	3	CDS	CDS:UTR3:EXON_MRNA	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000536696.6:ENST00000548091.5:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000549887.1:ENST00000551556.2:ENST00000551883.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.84089	3.41057	3.98025	0.0128123	0.00881716	0.0719798	0.0562439
chr2	55614567	55614665	2670577	0	-	0.367347	(0.36,0.39]	chr2	239037	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000470801.1:ENST00000612688.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.84089	3.41057	3.98025	0.0128123	0.00881716	0.0719798	0.0562439
chr1	202892248	202892343	1452796	0	-	0.452632	(0.42,0.455]	chr1	145973	13	UTR3	UTR3:EXON_MRNA	KLHL12	ENSG00000117153.16	ENST00000367259.1:ENST00000367261.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.57051	3.4103950000000003	4.25028	0.0265466	0.00406761	0.120071	0.032143
chr11	35186841	35186900	11908388	0	+	0.423729	(0.42,0.455]	chr11	910023	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD44	ENSG00000026508.20	ENST00000415148.6:ENST00000263398.11:ENST00000428726.8:ENST00000528086.5:ENST00000425428.6:ENST00000526669.6:ENST00000433892.6:ENST00000525211.6:ENST00000278386.10:ENST00000434472.6:ENST00000352818.8:ENST00000442151.6:ENST00000526000.6:ENST00000279452.10:ENST00000527889.6:ENST00000531118.5:ENST00000528455.5:ENST00000531873.5:ENST00000525209.5:ENST00000639002.1:ENST00000531110.6:ENST00000525685.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.57051	3.4103950000000003	4.25028	0.0265466	0.00406761	0.120071	0.032143
chr1	156137112	156137172	486149	0	+	0.683333	(0.59,1]	chr1	51295	1	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	140	2	2.4806	3.41031	4.34002	0.00183753	7.0863e-7	0.0184835	2.98009e-5
chr3	184149886	184149977	3947924	0	+	0.483516	(0.455,0.49]	chr3	331911	3	EXON_PSEUDO	EXON_PSEUDO	RP11-778D9.4	ENSG00000228205.1	ENST00000433853.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	55	2	3.16927	3.41003	3.65079	3.61776e-4	2.24921e-5	0.00544764	5.35456e-4
chr1	212102841	212102940	701712	0	+	0.474747	(0.455,0.49]	chr1	71179	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	3.30384	3.40998	3.51612	0.00184955	7.83131e-6	0.0178046	2.45497e-4
chr2	70088617	70088714	1878487	0	+	0.57732000000000006	(0.53,0.59]	chr2	177396	9	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	18	248	2	3.05576	3.409875	3.76399	4.49215e-6	1.04996e-9	1.56173e-4	1.09576e-7
chr11	8983180	8983271	12262350	0	-	0.395604	(0.39,0.42]	chr11	948062	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NRIP3	ENSG00000175352.11	ENST00000309166.8:ENST00000534759.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	3.32811	3.40978	3.49145	0.0350273	0.00182819	0.141505	0.0183913
chr6	26158359	26158450	7101294	0	+	0.593407	(0.59,1]	chr6	542809	2	CDS	CDS:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2:ENST00000377777.5	protein_coding	protein_coding	protein_coding	protein_coding	22	494	2	2.94439	3.40977	3.87515	5.6278e-6	1.73958e-8	1.70957e-4	1.3665e-6
chr11	125620771	125620810	12194549	0	+	0.435897	(0.42,0.455]	chr11	940806	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.96788	3.4096900000000003	3.8515	0.0119089	0.00109784	0.0686664	0.0119666
chr2	8908650	8908716	2506247	0	-	0.424242	(0.42,0.455]	chr2	226136	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000474341.5:ENST00000462696.1:ENST00000460786.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.96788	3.4096900000000003	3.8515	0.0119089	0.00109784	0.0686664	0.0119666
chr4	133872041	133872141	5650558	0	-	0.31	(0.29,0.33]	chr4	449787	4	SS3_PROX	SS3_PROX:INTRON	RP11-427M20.1	ENSG00000251388.1	ENST00000507844.1	lncRNA	lncRNA	lncRNA	lncRNA	3	27	2	3.08169	3.40965	3.73761	0.00114594	2.33029e-4	0.0130468	0.00355688
chr16	32880891	32880990	15920264	0	-	0.575758	(0.53,0.59]	chr16	1276412	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	SLC6A10P	ENSG00000214617.9	ENST00000330048.9:ENST00000431994.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	29	2	2.99511	3.4095899999999997	3.82407	0.0179666	9.46531e-4	0.0918323	0.010681
chr5	135343346	135343434	6847259	0	-	0.534091	(0.53,0.59]	chr5	523990	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MACROH2A1	ENSG00000113648.16	ENST00000511689.5:ENST00000512507.5:ENST00000451949.6:ENST00000304332.8:ENST00000312469.8:ENST00000360597.8:ENST00000511494.5:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000505827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	29	2	2.99511	3.4095899999999997	3.82407	0.0179666	9.46531e-4	0.0918323	0.010681
chr10	3779144	3779242	11348545	0	-	0.377551	(0.36,0.39]	chr10	865180	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1:ENST00000173785.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr10	120354893	120354989	11719757	0	-	0.385417	(0.36,0.39]	chr10	894248	3	EXON_PSEUDO	EXON_PSEUDO	RPL21P16	ENSG00000220842.6	ENST00000495531.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr2	230817753	230817825	2422060	0	+	0.361111	(0.36,0.39]	chr2	218075	1	CDS	CDS:EXON_MRNA	CAB39	ENSG00000135932.11	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7:ENST00000614925.1:ENST00000493540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr6	137198030	137198130	7988054	0	-	0.38	(0.36,0.39]	chr6	610794	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr8	11818649	11818749	9201860	0	+	0.38	(0.36,0.39]	chr8	703032	84	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr8	94517864	94517942	9960281	0	-	0.371795	(0.36,0.39]	chr8	751299	2	CDS	CDS:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr9	69715962	69716061	10674862	0	-	0.363636	(0.36,0.39]	chr9	808211	66	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.78659	3.409395	4.0322	0.0132982	0.00588589	0.0740932	0.0427941
chr1	43359968	43360032	164207	0	+	0.515625	(0.49,0.53]	chr1	20849	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000478882.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.8671	3.40935	3.9516	0.0100489	6.96459e-5	0.0623334	0.0013446
chr1	207322381	207322474	686272	0	+	0.494624	(0.49,0.53]	chr1	69472	1	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.8671	3.40935	3.9516	0.0100489	6.96459e-5	0.0623334	0.0013446
chr7	100093291	100093346	8949620	0	-	0.509091	(0.49,0.53]	chr7	683502	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:PRIMIRNA:INTRON	MCM7:MIR25:MIR93	ENSG00000166508.18:ENSG00000207547.1:ENSG00000207757.1	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000384816.1:ENST00000385024.1:ENST00000491245.6:ENST00000493352.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	7	81	2	2.39164	3.409135	4.42663	0.00116644	6.48162e-8	0.0131312	3.85234e-6
chr6	170660327	170660427	7556988	0	+	0.55	(0.53,0.59]	chr6	576995	199	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	2	25	2	2.14885	3.4091050000000003	4.66936	0.0262993	0.00103174	0.117164	0.0121443
chr7	158656628	158656705	9158763	0	-	0.571429	(0.53,0.59]	chr7	699550	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.14885	3.4091050000000003	4.66936	0.0262993	0.00103174	0.117164	0.0121443
chr17	41873810	41873887	16543815	0	-	0.584416	(0.53,0.59]	chr17	1356478	1	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.2596	3.4091	4.5586	0.0185443	0.00161229	0.0948733	0.0169168
chr5	134201847	134201934	6844159	0	-	0.356322	(0.33,0.36]	chr5	523690	1	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000495833.1:ENST00000522385.1:ENST00000523082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	68	2	3.39918	3.40906	3.41894	5.62284e-6	4.26874e-6	1.86867e-4	1.35859e-4
chr16	70252535	70252627	15996866	0	-	0.554348	(0.53,0.59]	chr16	1284590	7	UTR3	UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.87264	3.4088950000000002	3.94515	0.00168899	3.18429e-6	0.0175515	1.06148e-4
chr7	128089488	128089556	8519348	0	+	0.588235	(0.53,0.59]	chr7	649815	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5:ENST00000485871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	96	2	3.32707	3.408835	3.4906	2.9609e-5	2.35913e-6	7.34242e-4	8.27472e-5
chr17	78119296	78119392	16693109	0	-	0.53125	(0.53,0.59]	chr17	1375220	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000590934.1:ENST00000591756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	102	2	2.03947	3.4086499999999997	4.77783	0.00610305	3.90914e-9	0.0439421	3.44174e-7
chr5	168553381	168553480	6968951	0	-	0.424242	(0.42,0.455]	chr5	532791	50	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	PANK3:SLC2A3P1	ENSG00000120137.7:ENSG00000253861.1	ENST00000239231.7:ENST00000519666.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	37	2	2.90616	3.408565	3.91097	0.00162359	8.75299e-5	0.0169915	0.0016272
chr9	35059531	35059621	10638090	0	-	0.533333	(0.53,0.59]	chr9	804509	2	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	88	2	2.90539	3.408505	3.91162	5.33807e-5	4.03766e-6	0.00118956	1.29819e-4
chr1	21002742	21002808	885568	0	-	0.545455	(0.53,0.59]	chr1	91637	1	CDS	CDS:UTR5:EXON_MRNA	EIF4G3	ENSG00000075151.23	ENST00000374935.7:ENST00000264211.12:ENST00000602326.5:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.65894	3.4084950000000003	4.15805	0.0193255	0.00680952	0.0943643	0.0468196
chr10	102141414	102141510	11226456	0	+	0.572917	(0.53,0.59]	chr10	854772	25	CDS	CDS:UTR5:EXON_MRNA	PPRC1	ENSG00000148840.11	ENST00000413464.6:ENST00000278070.7:ENST00000370012.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.65894	3.4084950000000003	4.15805	0.0193255	0.00680952	0.0943643	0.0468196
chr17	38920373	38920473	16218428	0	+	0.55	(0.53,0.59]	chr17	1310821	17	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.65894	3.4084950000000003	4.15805	0.0193255	0.00680952	0.0943643	0.0468196
chr5	151269045	151269144	6298001	0	+	0.545455	(0.53,0.59]	chr5	491682	17	UTR3	UTR3:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000357164.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.65894	3.4084950000000003	4.15805	0.0193255	0.00680952	0.0943643	0.0468196
chr9	35712004	35712064	10639619	0	-	0.566667	(0.53,0.59]	chr9	805067	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.65894	3.4084950000000003	4.15805	0.0193255	0.00680952	0.0943643	0.0468196
chr7	159018243	159018341	8639475	0	+	0.540816	(0.53,0.59]	chr7	660126	2	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	1	19	2	2.515	3.408475	4.30195	0.0292633	0.00421989	0.129773	0.0328662
chr9	96146687	96146784	10375479	0	+	0.556701	(0.53,0.59]	chr9	781101	8	EXON_PSEUDO	EXON_PSEUDO	EIF4BP3	ENSG00000224546.2	ENST00000432132.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	2.515	3.408475	4.30195	0.0292633	0.00421989	0.129773	0.0328662
chr2	211775949	211776049	3149814	0	-	0.46	(0.455,0.49]	chr2	278203	249	INTRON	INTRON	ERBB4	ENSG00000178568.15	ENST00000342788.9:ENST00000402597.6:ENST00000436443.5:ENST00000484594.5:ENST00000260943.10:ENST00000484474.1:ENST00000435846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	64	2	2.53523	3.4084649999999996	4.2817	0.00270505	2.07199e-7	0.0243939	1.04734e-5
chr10	84081512	84081597	11164479	0	+	0.529412	(0.49,0.53]	chr10	848108	2	EXON_PSEUDO	EXON_PSEUDO	HMGN2P8	ENSG00000212769.5	ENST00000391458.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	27	2	1.78308	3.408445	5.03381	0.0425234	1.49689e-4	0.167547	0.0024973
chr7	43640572	43640649	8793927	0	-	0.519481	(0.49,0.53]	chr7	670399	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000488813.1:ENST00000415798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	1.78308	3.408445	5.03381	0.0425234	1.49689e-4	0.167547	0.0024973
chr12	110387815	110387892	13536953	0	-	0.480519	(0.455,0.49]	chr12	1064833	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC7:RP11-478C19.2	ENSG00000196510.14:ENSG00000258210.1	ENST00000455511.9:ENST00000450008.3:ENST00000546720.5:ENST00000552170.2:ENST00000550231.1:ENST00000464697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.27492	3.40833	4.54174	0.0193827	0.00130137	0.0943643	0.0136936
chr2	111863747	111863821	2847114	0	-	0.472973	(0.455,0.49]	chr2	253931	2	CDS	CDS:EXON_MRNA	ANAPC1	ENSG00000153107.13	ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.27492	3.40833	4.54174	0.0193827	0.00130137	0.0943643	0.0136936
chr7	92131773	92131872	8922291	0	-	0.383838	(0.36,0.39]	chr7	680679	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4:CTB-161K23.3	ENSG00000001630.17:ENSG00000285772.1:ENSG00000285953.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000650585.1:ENST00000435873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	2.63702	3.40825	4.17948	0.00212882	3.43356e-8	0.0206577	2.23074e-6
chr11	32932839	32932939	11899055	0	+	0.4	(0.39,0.42]	chr11	909001	12	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	3.14527	3.4080500000000002	3.67083	5.33048e-4	1.93844e-5	0.00742114	4.72961e-4
chr2	36845967	36846067	2594573	0	-	0.47	(0.455,0.49]	chr2	233508	84	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.78188	3.407685	4.03349	7.46087e-4	4.13044e-5	0.00892618	9.71332e-4
chr22	20950332	20950430	18300186	0	+	0.244898	[0,0.29]	chr22	1553647	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	39	261	2	2.97294	3.4075699999999998	3.8422	8.05996e-8	1.58606e-11	5.15307e-6	2.63249e-9
chr15	90980958	90981033	15439295	0	-	0.506667	(0.49,0.53]	chr15	1221385	2	CDS	CDS:UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000556982.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.6922	3.4074150000000003	4.12263	0.00591451	4.50155e-4	0.0427941	0.00605268
chr2	62146867	62146962	1844803	0	+	0.568421	(0.53,0.59]	chr2	175130	7	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000458337.5:ENST00000444166.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	45	2	3.00674	3.4074	3.80806	8.9408e-4	1.65022e-4	0.01086	0.00269147
chr3	33046175	33046232	4111445	0	-	0.596491	(0.59,1]	chr3	343484	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000490658.2:ENST00000498537.5:ENST00000415454.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.77418	3.4073200000000003	4.04046	0.0160729	9.42839e-5	0.0860154	0.0017195000000000001
chr19	38845914	38845977	17561174	0	-	0.555556	(0.53,0.59]	chr19	1475103	2	CDS	CDS:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1:ENST00000600741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.99511	3.406955	3.8188	9.46531e-4	1.54941e-4	0.010681	0.0028049
chr9	5805610	5805697	10542752	0	-	0.482759	(0.455,0.49]	chr9	799398	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMP1	ENSG00000099219.14	ENST00000462592.5:ENST00000214893.9:ENST00000339450.10:ENST00000489219.5:ENST00000487088.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	39	2	2.30139	3.4068500000000004	4.51231	0.0530131	1.73754e-6	0.195536	6.36428e-5
chr4	143996103	143996200	5696278	0	-	0.381443	(0.36,0.39]	chr4	451463	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	52	2	2.91432	3.4067499999999997	3.89918	1.0624e-4	4.97991e-5	0.00205241	0.00102381
chr12	110720854	110720947	13539224	0	-	0.301075	(0.29,0.33]	chr12	1065103	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	72	2	3.0357	3.4066	3.7775	4.36647e-5	1.89548e-7	0.00101315	9.72643e-6
chr19	14088227	14088321	17478310	0	-	0.531915	(0.53,0.59]	chr19	1464154	5	UTR3	UTR3:EXON_MRNA	SAMD1	ENSG00000141858.12	ENST00000533683.7	protein_coding	protein_coding	protein_coding	protein_coding	10	124	2	3.10323	3.4063749999999997	3.70952	3.15092e-6	2.03311e-6	1.05314e-4	8.03067e-5
chr19	36150177	36150245	17308845	0	+	0.661765	(0.59,1]	chr19	1432257	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000588815.5:ENST00000629983.2:ENST00000590049.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	4	88	2	2.67401	3.40626	4.13851	0.00166951	5.66622e-5	0.0173932	0.00114182
chr1	15938796	15938876	71929	0	+	0.575	(0.53,0.59]	chr1	8120	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPEN	ENSG00000065526.12	ENST00000375759.8:ENST00000487496.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.50447	3.406115	4.30776	0.0301162	0.00407289	0.130016	0.0324137
chr17	28757970	28758069	16487309	0	-	0.535354	(0.53,0.59]	chr17	1348267	21	UTR3	UTR3:EXON_MRNA	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000452648.8:ENST00000582059.6	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.50447	3.406115	4.30776	0.0301162	0.00407289	0.130016	0.0324137
chr21	34095298	34095395	18104969	0	+	0.536082	(0.53,0.59]	chr21	1534981	1	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	19	2	2.50447	3.406115	4.30776	0.0301162	0.00407289	0.130016	0.0324137
chr1	206907967	206908054	684283	0	+	0.563218	(0.53,0.59]	chr1	69140	5	EXON_PSEUDO	EXON_PSEUDO	RP11-564A8.4	ENSG00000226945.1	ENST00000446057.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr11	47477296	47477360	12386890	0	-	0.53125	(0.53,0.59]	chr11	956959	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000531165.5:ENST00000532048.5:ENST00000534614.1:ENST00000422993.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr12	6600305	6600395	13187413	0	-	0.566667	(0.53,0.59]	chr12	1032394	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr12	93641299	93641394	13473458	0	-	0.578947	(0.53,0.59]	chr12	1059444	6	EXON_PSEUDO	EXON_PSEUDO	RP11-887P2.3	ENSG00000186076.5	ENST00000548270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr14	20329311	20329380	14517394	0	-	0.536232	(0.53,0.59]	chr14	1136524	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000555348.5:ENST00000557114.5:ENST00000555963.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr2	131146650	131146711	2065724	0	+	0.557377	(0.53,0.59]	chr2	194094	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr2	215349535	215349555	2377292	0	+	0.55	(0.53,0.59]	chr2	213587	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000479093.5:ENST00000442048.3:ENST00000478734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr6	37480012	37480045	7138000	0	+	0.545455	(0.53,0.59]	chr6	550225	1	CDS	CDS:EXON_MRNA:INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9:ENST00000457419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.64837	3.4061	4.16383	0.0199467	0.00659193	0.0984041	0.0454205
chr10	74118568	74118668	11117653	0	+	0.47	(0.455,0.49]	chr10	846311	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	107	2	3.2697	3.405965	3.54223	3.70782e-6	4.10563e-7	1.31913e-4	1.87484e-5
chr2	73247843	73247926	1885454	0	+	0.445783	(0.42,0.455]	chr2	178558	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2:ENST00000473786.5:ENST00000488856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	104	2	2.61085	3.40596	4.20107	7.93561e-4	4.56226e-9	0.00988333	3.93886e-7
chr20	23457583	23457634	17929922	0	-	0.45098	(0.42,0.455]	chr20	1517690	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200208.1	ENST00000363338.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	27	257	2	3.11609	3.4059549999999996	3.69582	3.5164e-8	5.39139e-9	2.28201e-6	4.93477e-7
chr19	9830008	9830061	17223508	0	+	0.566038	(0.53,0.59]	chr19	1418097	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBL5	ENSG00000198258.11	ENST00000358666.7:ENST00000590068.1:ENST00000589960.5:ENST00000593087.1:ENST00000586895.6:ENST00000589372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	2.45052	3.405925	4.36133	0.00355092	5.91026e-6	0.0300049	1.77972e-4
chrX	37731931	37732030	18656849	0	+	0.363636	(0.36,0.39]	chrX	1591369	36	UTR3	UTR3:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.48922	3.4057950000000003	4.32237	0.0110399	0.00273222	0.0652374	0.0237575
chr7	103472156	103472250	8962948	0	-	0.287234	[0,0.29]	chr7	686032	5	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.77356	3.40577	4.03798	9.10413e-4	7.64187e-5	0.0103519	0.00160163
chr1	226385591	226385680	1533280	0	-	0.58427	(0.53,0.59]	chr1	153490	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	2.14205	3.405705	4.66936	0.0123179	0.00103174	0.070688	0.0121443
chr16	1699291	1699388	15488673	0	+	0.536082	(0.53,0.59]	chr16	1226188	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.14205	3.405705	4.66936	0.0123179	0.00103174	0.070688	0.0121443
chr15	82539980	82540056	15412567	0	-	0.539474	(0.53,0.59]	chr15	1218669	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CH17-66N5.1:RPS17:RP11-152F13.10	ENSG00000284803.1:ENSG00000182774.13:ENSG00000260836.2	ENST00000561440.2:ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1:ENST00000559776.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:lncRNA	65	839	2	3.19756	3.405295	3.61303	1.25497e-8	3.54271e-11	1.032e-6	5.39785e-9
chr17	35723892	35723989	16207501	0	+	0.536082	(0.53,0.59]	chr17	1309154	3	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	55	2	3.11992	3.405285	3.69065	3.04331e-4	1.09102e-4	0.00472028	0.00194222
chr15	71163870	71163970	15364098	0	-	0.36	(0.33,0.36]	chr15	1213704	157	INTRON	INTRON	THSD4-AS1	ENSG00000259964.7	ENST00000561571.5	lncRNA	lncRNA	lncRNA	lncRNA	2	18	2	1.97842	3.4052	4.83198	0.0469469	1.88689e-4	0.171977	0.0032588
chrX	154436248	154436337	18917923	0	+	0.47191	(0.455,0.49]	chrX	1611929	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	60	2	3.24286	3.4050849999999997	3.56731	2.77105e-4	5.31643e-6	0.00444204	1.62817e-4
chr11	3735257	3735324	12238336	0	-	0.492537	(0.49,0.53]	chr11	945617	2	CDS	CDS:UTR3:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.38204	3.40497	4.4279	0.0049129	0.00196987	0.0366648	0.0193972
chr6	26251750	26251840	7101657	0	+	0.544444	(0.53,0.59]	chr6	542880	1	CDS	CDS:EXON_MRNA	H2BC9	ENSG00000275713.2	ENST00000619466.2	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.33569	3.40494	3.47419	8.75273e-4	1.57373e-4	0.0106963	0.00260854
chrX	63350444	63350535	19088588	0	-	0.516484	(0.49,0.53]	chrX	1624067	4	CDS	CDS:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	25	2	2.8681	3.404935	3.94177	0.0104929	0.00175299	0.063428	0.0171299
chrX	150795205	150795289	19265406	0	-	0.488095	(0.455,0.49]	chrX	1636661	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CD99L2	ENSG00000102181.21	ENST00000370377.8:ENST00000346693.8:ENST00000613030.4:ENST00000437787.6:ENST00000355149.8:ENST00000466436.5:ENST00000634795.1:ENST00000418547.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.99697	3.40486	3.81275	0.0138827	9.57891e-4	0.0760883	0.0107247
chr7	143306821	143306918	8581152	0	+	0.42268	(0.42,0.455]	chr7	655693	19	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.40664	3.4047	4.40276	0.00445101	0.0017618	0.0340751	0.0180053
chr1	202331745	202331834	1450332	0	-	0.337079	(0.33,0.36]	chr1	145678	2	UTR3	UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.7655	3.4040749999999997	4.04265	0.0175892	3.90477e-5	0.0918323	8.43777e-4
chr18	31089438	31089516	17058578	0	-	0.384615	(0.36,0.39]	chr18	1401847	1	CDS	CDS:EXON_MRNA	DSC2	ENSG00000134755.18	ENST00000251081.8:ENST00000280904.11:ENST00000648081.1:ENST00000682357.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.84089	3.4040299999999997	3.96717	0.0128123	6.17763e-5	0.0719798	0.00122919
chr2	47445547	47445602	1784936	0	+	0.381818	(0.36,0.39]	chr2	172485	1	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.84089	3.4040299999999997	3.96717	0.0128123	6.17763e-5	0.0719798	0.00122919
chr1	29018223	29018296	120601	0	+	0.452055	(0.42,0.455]	chr1	14623	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	2.52254	3.40402	4.2855	5.58298e-4	8.02587e-6	0.00709272	2.50919e-4
chr7	16674496	16674581	8148862	0	+	0.470588	(0.455,0.49]	chr7	622117	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	68	2	3.06025	3.40397	3.74769	1.55878e-4	1.33345e-6	0.00259387	5.61083e-5
chr12	71610150	71610242	13408933	0	-	0.413043	(0.39,0.42]	chr12	1055850	7	UTR3	UTR3:EXON_MRNA	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	3.0503	3.403915	3.75753	0.00570576	2.04026e-4	0.0424438	0.00320361
chr6	32168404	32168501	7664643	0	-	0.505155	(0.49,0.53]	chr6	586094	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	94	2	3.36911	3.403855	3.4386	2.16178e-5	9.97799e-7	5.71712e-4	3.98163e-5
chr9	137242783	137242879	10515402	0	+	0.489583	(0.455,0.49]	chr9	797249	4	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	112	2	2.97559	3.4034750000000003	3.83136	7.43747e-6	1.26771e-7	2.36451e-4	6.85069e-6
chr19	38305507	38305607	17559373	0	-	0.59	(0.53,0.59]	chr19	1474559	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000589151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.0404	3.403365	4.76633	0.0362529	6.98999e-4	0.148525	0.00846751
chr7	119907292	119907344	9034124	0	-	0.576923	(0.53,0.59]	chr7	689742	1	EXON_LNCRNA	EXON_LNCRNA	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	4	34	2	1.61377	3.4033249999999997	5.19288	0.0436338	9.22873e-5	0.170594	0.0016906
chr14	94079317	94079415	14775433	0	-	0.510204	(0.49,0.53]	chr14	1157311	4	CDS	CDS:UTR5:EXON_MRNA:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.12684	3.4032799999999996	4.67972	0.0134683	6.94757e-4	0.0744999	0.00876781
chr15	59116768	59116847	14959916	0	+	0.35443	(0.33,0.36]	chr15	1175700	2	CDS	CDS:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	3.15976	3.403265	3.64677	0.00437542	2.94381e-6	0.0340502	9.91257e-5
chr1	1041322	1041397	2263	0	+	0.68	(0.59,1]	chr1	479	3	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.6892	3.40296	4.11672	0.0222273	0.00147019	0.105595	0.0149767
chr4	26433952	26434050	4766710	0	+	0.295918	(0.29,0.33]	chr4	394281	31	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.24226	3.40281	4.56336	0.0306054	8.8231e-4	0.130226	0.0101404
chr8	39103700	39103796	9296534	0	+	0.302083	(0.29,0.33]	chr8	711312	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2:ENST00000463437.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.24226	3.40281	4.56336	0.0306054	8.8231e-4	0.130226	0.0101404
chr18	46091681	46091740	17103881	0	-	0.40678	(0.39,0.42]	chr18	1404379	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000589611.1:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.01677	3.402775	4.78878	0.0235818	4.27222e-4	0.111323	0.00577513
chr16	30068903	30068990	15628421	0	+	0.586207	(0.53,0.59]	chr16	1239786	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000562679.5:ENST00000564688.1:ENST00000566146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	491	2	3.00595	3.4026449999999997	3.79934	2.59516e-8	1.16501e-9	1.76492e-6	1.307e-7
chr7	44799709	44799774	8261644	0	+	0.461538	(0.455,0.49]	chr7	629468	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	137	2	3.08565	3.402545	3.71944	3.08634e-6	2.99776e-8	1.14585e-4	1.99516e-6
chr1	6186282	6186379	842297	0	-	0.329897	(0.29,0.33]	chr1	84886	14	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	99	2	3.26035	3.402235	3.54412	2.68487e-6	1.92636e-7	1.0119e-4	9.85444e-6
chrX	154436158	154436248	18917922	0	+	0.444444	(0.42,0.455]	chrX	1611929	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.92513	3.4021749999999997	3.87922	3.39829e-4	1.04705e-4	0.00479167	0.0020295
chr14	94060912	94060989	14775243	0	-	0.467532	(0.455,0.49]	chr14	1157294	1	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	1.92777	3.40205	4.87633	0.0286531	2.95855e-4	0.128685	0.00432147
chr3	93893027	93893122	4315199	0	-	0.442105	(0.42,0.455]	chr3	359853	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	38	2	2.36247	3.401985	4.4415	0.0462889	2.94164e-6	0.176878	9.91141e-5
chr7	121097742	121097831	8494826	0	+	0.47191	(0.455,0.49]	chr7	648342	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	64	2	3.11472	3.401875	3.68903	3.40155e-5	1.71879e-5	8.31666e-4	4.32994e-4
chr1	35386073	35386131	137103	0	+	0.413793	(0.39,0.42]	chr1	16849	1	CDS	CDS:EXON_MRNA:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.86368	3.40182	3.93996	0.0101619	0.00841622	0.0627153	0.054565
chr3	197274482	197274582	4669783	0	-	0.42	(0.39,0.42]	chr3	386440	33	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.86368	3.40182	3.93996	0.0101619	0.00841622	0.0627153	0.054565
chr4	135045958	135046057	5119833	0	+	0.414141	(0.39,0.42]	chr4	414782	6	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.86368	3.40182	3.93996	0.0101619	0.00841622	0.0627153	0.054565
chr10	91227603	91227692	11187224	0	+	0.314607	(0.29,0.33]	chr10	850389	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6:ENST00000490164.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.67277	3.401645	4.13052	0.0255386	6.70339e-7	0.117089	2.8446e-5
chr17	46721874	46721971	16569014	0	-	0.443299	(0.42,0.455]	chr17	1360930	4	EXON_PSEUDO	EXON_PSEUDO	RPS7P11	ENSG00000213326.4	ENST00000484240.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	95	2	3.17394	3.401545	3.62915	7.9768e-6	7.04911e-7	2.49684e-4	2.96491e-5
chr8	70573502	70573597	9881270	0	-	0.357895	(0.33,0.36]	chr8	746911	4	UTR3	UTR3:EXON_MRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.57153	3.40149	4.23145	0.00330025	1.158e-5	0.028478	3.09867e-4
chr1	173481403	173481482	548551	0	+	0.443038	(0.42,0.455]	chr1	58285	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000460950.1:ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	96	2	3.38721	3.40143	3.41565	4.77528e-6	1.18603e-6	1.64158e-4	4.61657e-5
chr3	140979513	140979612	3783453	0	+	0.272727	[0,0.29]	chr3	322887	32	UTR3	UTR3:EXON_MRNA	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	2.50979	3.4011250000000004	4.29246	0.00608277	0.00254021	0.0438976	0.0227257
chr11	7994425	7994517	11789489	0	+	0.532609	(0.53,0.59]	chr11	902515	1	CDS	CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	2.9831	3.40095	3.8188	1.54941e-4	3.1905e-5	0.0028049	7.08895e-4
chr11	114407444	114407531	12150129	0	+	0.37931	(0.36,0.39]	chr11	935847	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RBM7:RP11-212D19.4	ENSG00000076053.12:ENSG00000255663.1	ENST00000540163.5:ENST00000541475.5:ENST00000544313.5:ENST00000544582.1:ENST00000375490.10:ENST00000542140.5:ENST00000545678.1:ENST00000544347.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.37674	3.4008849999999997	4.42503	0.00529284	0.00133228	0.0390084	0.0144372
chr12	54252133	54252227	13343051	0	-	0.382979	(0.36,0.39]	chr12	1049616	2	CDS	CDS:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6:ENST00000547872.1:ENST00000550411.5:ENST00000552562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.37674	3.4008849999999997	4.42503	0.00529284	0.00133228	0.0390084	0.0144372
chr21	37079813	37079912	18114292	0	+	0.343434	(0.33,0.36]	chr21	1535845	60	INTRON	INTRON	TTC3	ENSG00000182670.13	ENST00000492275.5:ENST00000418766.5:ENST00000485402.5:ENST00000438055.5:ENST00000450533.5:ENST00000355666.5:ENST00000481605.5:ENST00000463216.5:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.28792	3.40085	4.51378	0.0239159	0.00118147	0.112531	0.0127276
chr12	67313621	67313720	12934151	0	+	0.252525	[0,0.29]	chr12	1008121	9	UTR3	UTR3:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.4397	3.4007650000000003	4.36183	0.0388194	0.00170062	0.149227	0.01759
chr12	123155011	123155111	13593841	0	-	0.51	(0.49,0.53]	chr12	1070768	9	UTR3	UTR3:EXON_MRNA:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000544217.1:ENST00000541603.6:ENST00000606320.6:ENST00000541076.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	3.11892	3.40069	3.68246	0.00398244	3.06313e-4	0.0322851	0.00442973
chrX	40051340	40051436	19044891	0	-	0.260417	[0,0.29]	chrX	1618692	2	UTR3	UTR3:EXON_MRNA:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	49	2	2.69455	3.40069	4.10683	5.27788e-4	8.26613e-7	0.00736361	3.40203e-5
chr21	36375486	36375582	18111954	0	+	0.34375	(0.33,0.36]	chr21	1535575	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	1.82006	3.4005549999999998	4.98105	0.0323353	1.32493e-4	0.135977	0.00227943
chrX	48913750	48913845	19063606	0	-	0.494737	(0.49,0.53]	chrX	1620588	7	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	10	106	2	2.73385	3.400525	4.0672	4.41131e-5	1.03324e-7	0.00102242	5.73189e-6
chr5	154814583	154814680	6315016	0	+	0.556701	(0.53,0.59]	chr5	492515	6	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	8	104	2	3.16049	3.400405	3.64032	9.16193e-6	3.4163e-6	2.82254e-4	1.12474e-4
chr19	55643648	55643711	17397018	0	+	0.730159	(0.59,1]	chr19	1448835	1	UTR5	UTR5:EXON_MRNA:INTRON	ZNF581:CCDC106	ENSG00000171425.10:ENSG00000173581.8	ENST00000587252.5:ENST00000585995.1:ENST00000592996.5:ENST00000270451.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.68392	3.40032	4.11672	0.0222273	0.0202468	0.105595	0.0984041
chr7	99325878	99325941	8421615	0	+	0.730159	(0.59,1]	chr7	641743	1	UTR5	UTR5:EXON_MRNA	RP5-900K19.2:ARPC1A	ENSG00000284292.1:ENSG00000241685.10	ENST00000638617.1:ENST00000441989.6:ENST00000262942.10:ENST00000432786.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.68392	3.40032	4.11672	0.0222273	0.0202468	0.105595	0.0984041
chr11	57741422	57741508	11952450	0	+	0.639535	(0.59,1]	chr11	914748	3	UTR5	UTR5:EXON_MRNA:INTRON	TMX2-CTNND1:SELENOH	ENSG00000288534.1:ENSG00000211450.10	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000622257.4:ENST00000534355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.25872	3.4002749999999997	4.54183	0.0193473	0.0070583	0.0969537	0.0478044
chr19	1815974	1816065	17420315	0	-	0.626374	(0.59,1]	chr19	1452894	9	UTR3	UTR3:EXON_MRNA:PRIMIRNA	REXO1:MIR1909	ENSG00000079313.15:ENSG00000284216.1	ENST00000170168.9:ENST00000411312.1:ENST00000643515.1:ENST00000590936.5:ENST00000587404.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	36	2	2.25872	3.4002749999999997	4.54183	0.0193473	0.0070583	0.0969537	0.0478044
chr12	108654305	108654378	13530575	0	-	0.465753	(0.455,0.49]	chr12	1063958	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552030.5:ENST00000547361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.9967	3.40015	3.8036	0.00650423	1.59194e-4	0.0454205	0.00263091
chr3	41233392	41233444	3432555	0	+	0.423077	(0.42,0.455]	chr3	298552	2	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.1201	3.399955	4.67981	0.00744913	5.38444e-4	0.0492835	0.00744072
chr11	64220435	64220513	11979489	0	+	0.679487	(0.59,1]	chr11	918797	1	CDS	CDS:EXON_MRNA	FERMT3	ENSG00000149781.13	ENST00000345728.10:ENST00000279227.9:ENST00000541326.5:ENST00000540957.1:ENST00000545896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.32455	3.3998600000000003	4.47517	0.0520547	0.00735659	0.193787	0.0491503
chr19	4361315	4361409	17431402	0	-	0.648936	(0.59,1]	chr19	1454998	11	UTR3	UTR3:EXON_MRNA	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.32455	3.3998600000000003	4.47517	0.0520547	0.00735659	0.193787	0.0491503
chrX	153954261	153954360	19275635	0	-	0.676768	(0.59,1]	chrX	1637914	3	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.32455	3.3998600000000003	4.47517	0.0520547	0.00735659	0.193787	0.0491503
chr1	493621	493716	822569	0	-	0.526316	(0.49,0.53]	chr1	81360	5	INTRON	INTRON	RP4-669L17.4	ENSG00000237094.12	ENST00000455464.7:ENST00000601814.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	17	2	2.72252	3.3998549999999996	4.07719	0.0161474	0.0074411	0.0860154	0.0492519
chr10	69343932	69343989	11096259	0	+	0.491228	(0.49,0.53]	chr10	843731	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000483077.5:ENST00000643399.2:ENST00000421088.5:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.72252	3.3998549999999996	4.07719	0.0161474	0.0074411	0.0860154	0.0492519
chr20	483360	483460	17871447	0	-	0.48	(0.455,0.49]	chr20	1511949	47	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.43664	3.3998549999999996	4.36307	0.00394058	0.00218641	0.0315828	0.0208941
chr7	128317956	128318031	9058693	0	-	0.52	(0.49,0.53]	chr7	691270	1	CDS	CDS:EXON_MRNA:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000481788.1:ENST00000415472.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.72252	3.3998549999999996	4.07719	0.0161474	0.0074411	0.0860154	0.0492519
chrX	41344332	41344409	18669452	0	+	0.38961	(0.36,0.39]	chrX	1592214	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.76749	3.399845	4.0322	0.00588589	0.00287858	0.0427941	0.0247002
chr19	54106810	54106902	17389902	0	+	0.652174	(0.59,1]	chr19	1447001	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	NDUFA3	ENSG00000170906.16	ENST00000417903.5:ENST00000419113.5:ENST00000391762.5:ENST00000485876.6:ENST00000451517.5:ENST00000391764.7:ENST00000391763.3:ENST00000484103.1:ENST00000303553.5:ENST00000422029.6:ENST00000420296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	27	2	2.42639	3.3998100000000004	4.37323	0.0409084	0.00990413	0.163285	0.061536
chr12	110719951	110720042	13539214	0	-	0.318681	(0.29,0.33]	chr12	1065101	4	UTR3	UTR3:EXON_MRNA	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	58	2	3.08169	3.39981	3.71793	0.00114594	3.19594e-7	0.0130468	1.51018e-5
chr11	117167420	117167509	12154339	0	+	0.505618	(0.49,0.53]	chr11	936187	1	CDS	CDS:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.56183	3.39971	4.23759	0.0261296	0.00436474	0.118976	0.0335517
chr14	90263754	90263847	14455269	0	+	0.505376	(0.49,0.53]	chr14	1128507	2	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMC1	ENSG00000100764.14	ENST00000553835.5:ENST00000261303.13:ENST00000555679.5:ENST00000557357.5:ENST00000543772.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.56183	3.39971	4.23759	0.0261296	0.00436474	0.118976	0.0335517
chrX	38803419	38803518	18666820	0	+	0.494949	(0.49,0.53]	chrX	1591771	21	UTR5	UTR5:EXON_MRNA:INTRON	MID1IP1	ENSG00000165175.16	ENST00000614558.2:ENST00000457894.5:ENST00000378474.3:ENST00000336949.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.56183	3.39971	4.23759	0.0261296	0.00436474	0.118976	0.0335517
chrX	53604588	53604670	19077945	0	-	0.52439	(0.49,0.53]	chrX	1622933	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.56183	3.39971	4.23759	0.0261296	0.00436474	0.118976	0.0335517
chr19	2037555	2037646	17421444	0	-	0.340659	(0.33,0.36]	chr19	1453116	2	UTR3	UTR3:EXON_MRNA	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	3.34893	3.399535	3.45014	2.22813e-4	8.23333e-5	0.00370775	0.00155613
chr6	75255008	75255107	7800319	0	-	0.343434	(0.33,0.36]	chr6	597646	22	UTR3	UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.81756	3.399305	4.98105	0.0223533	1.32493e-4	0.106046	0.00227943
chr1	207048322	207048422	1465437	0	-	0.33	(0.29,0.33]	chr1	148274	46	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	3.20367	3.39904	3.59441	6.11481e-4	3.40774e-5	0.00818575	7.50473e-4
chr1	207783291	207783330	690105	0	+	0.410256	(0.39,0.42]	chr1	70095	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000636114.1:ENST00000488596.5:ENST00000490278.1:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	79	2	3.37108	3.399005	3.42693	5.21879e-6	3.8197e-6	1.60277e-4	1.35409e-4
chr1	182384577	182384650	1401222	0	-	0.506849	(0.49,0.53]	chr1	141692	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000461447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	134	2	3.36661	3.398705	3.4308	1.02218e-6	3.16374e-7	4.50911e-5	1.49603e-5
chr18	3277252	3277333	16729907	0	+	0.506173	(0.49,0.53]	chr18	1380130	1	CDS	CDS:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.46958	3.3986349999999996	4.32769	0.00344146	6.54988e-6	0.0292838	1.94116e-4
chr1	40070835	40070907	151967	0	+	0.444444	(0.42,0.455]	chr1	19038	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1:ENST00000494114.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	3.17397	3.39856	3.62315	0.0031821	4.234e-4	0.0267094	0.00613535
chr6	43513358	43513451	7708003	0	-	0.451613	(0.42,0.455]	chr6	591424	1	CDS	CDS:UTR3:EXON_MRNA	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6:ENST00000455768.6:ENST00000416380.6:ENST00000372417.1:ENST00000500090.2:ENST00000488966.1:ENST00000502714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	3.17397	3.39856	3.62315	0.0031821	4.234e-4	0.0267094	0.00613535
chr20	38128752	38128849	17962918	0	-	0.546392	(0.53,0.59]	chr20	1522305	15	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.63316	3.398495	4.16383	0.00659193	0.00474401	0.0454205	0.0361423
chr9	109050355	109050428	10788080	0	-	0.369863	(0.36,0.39]	chr9	816830	2	CDS	CDS:UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.02397	3.3984949999999996	3.77302	0.0162599	0.00674398	0.0866586	0.0461258
chr19	40751339	40751408	17330802	0	+	0.449275	(0.42,0.455]	chr19	1436127	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	69	2	3.09173	3.398375	3.70502	1.40817e-4	1.90816e-6	0.00258348	6.90654e-5
chr5	43298691	43298778	6560256	0	-	0.402299	(0.39,0.42]	chr5	508374	3	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	3.3111	3.3983350000000003	3.48557	2.11919e-4	9.58193e-6	0.00357806	2.6635e-4
chr7	139562166	139562266	9103280	0	-	0.37	(0.36,0.39]	chr7	694628	7	UTR3	UTR3:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.63521	3.39832	4.16143	0.00633242	0.00486719	0.0446708	0.0366328
chr8	120414051	120414112	10047700	0	-	0.327869	(0.29,0.33]	chr8	756173	2	CDS	CDS:UTR3:EXON_MRNA	MRPL13	ENSG00000172172.8	ENST00000521648.5:ENST00000518696.5:ENST00000306185.8:ENST00000522717.1:ENST00000613356.1:ENST00000518918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	3.16962	3.398225	3.62683	6.18968e-4	2.42328e-5	0.00822794	5.68668e-4
chr6	31829104	31829200	7116698	0	+	0.666667	(0.59,1]	chr6	546209	12	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	135	2	2.70328	3.3980699999999997	4.09286	6.00007e-4	4.23802e-6	0.00750723	1.48276e-4
chr18	9124873	9124928	16751030	0	+	0.4	(0.39,0.42]	chr18	1381370	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFV2:RP11-21J18.1	ENSG00000178127.13:ENSG00000265257.5	ENST00000318388.11:ENST00000578850.1:ENST00000579126.5:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	53	2	3.23516	3.398065	3.56097	6.12149e-4	1.41395e-5	0.00818575	3.65815e-4
chr11	10508803	10508899	12270805	0	-	0.40625	(0.39,0.42]	chr11	948737	6	UTR5	UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	37	2	3.32811	3.398015	3.46792	0.00182819	7.10972e-5	0.0183913	0.00136974
chr10	22329442	22329542	10962211	0	+	0.46	(0.455,0.49]	chr10	834313	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	COMMD3-BMI1:BMI1	ENSG00000269897.5:ENSG00000168283.14	ENST00000602390.5:ENST00000376663.8:ENST00000490311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.15985	3.3979600000000003	4.63607	0.0128965	6.94376e-7	0.0722356	2.92826e-5
chr17	36988636	36988720	16212372	0	+	0.47619	(0.455,0.49]	chr17	1309822	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000613840.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000610798.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.69053	3.3979399999999997	4.10535	0.0182983	0.0064531	0.0925808	0.0450905
chr2	27200152	27200246	2569351	0	-	0.478723	(0.455,0.49]	chr2	231180	7	UTR3	UTR3:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.69053	3.3979399999999997	4.10535	0.0182983	0.0064531	0.0925808	0.0450905
chr20	38011705	38011801	17962665	0	-	0.46875	(0.455,0.49]	chr20	1522288	3	CDS	CDS:EXON_MRNA	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.69053	3.3979399999999997	4.10535	0.0182983	0.0064531	0.0925808	0.0450905
chr7	22654110	22654209	8721742	0	-	0.464646	(0.455,0.49]	chr7	665790	3	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000442252.1:ENST00000650428.1:ENST00000649402.1:ENST00000414116.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	16	2	2.69053	3.3979399999999997	4.10535	0.0182983	0.0064531	0.0925808	0.0450905
chr8	109245321	109245421	10008552	0	-	0.47	(0.455,0.49]	chr8	754387	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000679027.1:ENST00000678094.1:ENST00000676990.1:ENST00000519607.5:ENST00000427660.6:ENST00000676569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.69053	3.3979399999999997	4.10535	0.0182983	0.0064531	0.0925808	0.0450905
chr9	113407529	113407628	10807722	0	-	0.474747	(0.455,0.49]	chr9	819089	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.69053	3.3979399999999997	4.10535	0.0182983	0.0064531	0.0925808	0.0450905
chr1	21880180	21880254	891279	0	-	0.608108	(0.59,1]	chr1	92551	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	2.77109	3.39785	4.02461	0.00331425	5.32274e-6	0.0285314	1.62953e-4
chr1	50779912	50780012	1011375	0	-	0.35	(0.33,0.36]	chr1	104789	348	INTRON	INTRON	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	3.3227	3.39785	3.473	0.00222616	8.77304e-4	0.0211992	0.0101202
chr1	202334988	202335027	1450370	0	-	0.358974	(0.33,0.36]	chr1	145698	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	3.3227	3.39785	3.473	0.00222616	8.77304e-4	0.0211992	0.0101202
chr11	2397220	2397308	11764986	0	+	0.659091	(0.59,1]	chr11	900180	5	UTR3	UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000526072.5:ENST00000531840.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	3.0542	3.39752	3.74084	0.00663549	4.03818e-4	0.0456243	0.00550292
chr3	12582549	12582648	3314784	0	+	0.393939	(0.39,0.42]	chr3	291641	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	3.23394	3.397455	3.56097	6.12149e-4	5.30858e-5	0.00818575	0.00108035
chr17	46721776	46721874	16569013	0	-	0.479592	(0.455,0.49]	chr17	1360930	3	EXON_PSEUDO	EXON_PSEUDO	RPS7P11	ENSG00000213326.4	ENST00000484240.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	29	2	1.72305	3.397385	5.07172	0.0324537	8.3067e-5	0.134899	0.00171126
chr1	160996990	160997089	1331408	0	-	0.414141	(0.39,0.42]	chr1	136426	19	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.48908	3.39719	4.3053	0.0101318	7.30538e-6	0.0626311	2.13219e-4
chr1	236526070	236526115	769539	0	+	0.355556	(0.33,0.36]	chr1	77568	1	CDS_START	CDS_START:CDS:EXON_MRNA	LGALS8	ENSG00000116977.19	ENST00000481485.5:ENST00000454943.6:ENST00000527974.5:ENST00000430527.6:ENST00000352231.6:ENST00000406509.7:ENST00000526589.5:ENST00000529489.5:ENST00000450372.6:ENST00000416919.6:ENST00000341872.10:ENST00000238181.11:ENST00000475670.2:ENST00000366584.9:ENST00000528782.5:ENST00000532826.5:ENST00000366583.6:ENST00000442397.6:ENST00000434231.6:ENST00000323938.10:ENST00000526634.5:ENST00000525042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.97606	3.39719	3.81832	0.0135793	0.00871774	0.0745701	0.0558165
chr20	50890439	50890535	18006286	0	-	0.333333	(0.33,0.36]	chr20	1526241	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.97606	3.39719	3.81832	0.0135793	0.00871774	0.0745701	0.0558165
chr8	6757162	6757225	9180769	0	+	0.349206	(0.33,0.36]	chr8	701067	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000530716.1:ENST00000533159.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.97606	3.39719	3.81832	0.0135793	0.00871774	0.0745701	0.0558165
chr14	69442068	69442167	14373286	0	+	0.434343	(0.42,0.455]	chr14	1123155	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A9	ENSG00000029364.12	ENST00000556125.5:ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.94263	3.397065	3.8515	0.0119089	0.00766873	0.0686664	0.0503696
chr2	171844368	171844453	3014913	0	-	0.435294	(0.42,0.455]	chr2	267085	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A12	ENSG00000115840.14	ENST00000422440.7:ENST00000263812.8:ENST00000426896.5:ENST00000475360.6:ENST00000472748.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.94263	3.397065	3.8515	0.0119089	0.00766873	0.0686664	0.0503696
chr5	132198205	132198271	6833510	0	-	0.424242	(0.42,0.455]	chr5	522688	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	P4HA2	ENSG00000072682.20	ENST00000360568.8:ENST00000379104.7:ENST00000401867.5:ENST00000166534.8:ENST00000379086.5:ENST00000379100.7:ENST00000428369.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.94263	3.397065	3.8515	0.0119089	0.00766873	0.0686664	0.0503696
chrX	123636078	123636175	19198522	0	-	0.43299	(0.42,0.455]	chrX	1632562	1	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.94263	3.397065	3.8515	0.0119089	0.00766873	0.0686664	0.0503696
chr1	17407341	17407438	874003	0	-	0.474227	(0.455,0.49]	chr1	89600	7	UTR3	UTR3:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	3.2935	3.3969899999999997	3.50048	5.99835e-5	3.58585e-5	0.00130886	7.84153e-4
chr15	78499213	78499311	15040143	0	+	0.377551	(0.36,0.39]	chr15	1183144	12	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.32678	3.39696	4.46714	0.0193538	0.00155822	0.0943643	0.0156889
chr1	32228746	32228846	127543	0	+	0.53	(0.49,0.53]	chr1	15808	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	113	2	3.35538	3.3969300000000002	3.43848	3.12402e-6	7.6559e-7	1.15696e-4	3.18774e-5
chr17	39257860	39257960	16534336	0	-	0.41	(0.39,0.42]	chr17	1353914	53	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.30055	3.3968949999999998	4.49324	0.0070645	0.00108192	0.0477419	0.0124943
chr9	76387299	76387398	10694391	0	-	0.262626	[0,0.29]	chr9	809404	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1:ENST00000483155.5:ENST00000476087.5:ENST00000472900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.61628	3.396865	4.17745	0.0101434	4.37196e-9	0.0626311	3.79596e-7
chr1	51783914	51783969	191647	0	+	0.309091	(0.29,0.33]	chr1	24559	1	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.67277	3.3967199999999997	4.12067	0.0255386	2.40819e-5	0.117089	5.6648e-4
chr1	160323430	160323530	1329038	0	-	0.53	(0.49,0.53]	chr1	136088	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	3.27328	3.396545	3.51981	6.88328e-4	2.21441e-4	0.00876781	0.00341572
chr2	62146582	62146677	1844800	0	+	0.526316	(0.49,0.53]	chr2	175130	4	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000458337.5:ENST00000444166.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	40	2	3.27328	3.396545	3.51981	6.88328e-4	2.21441e-4	0.00876781	0.00341572
chr7	6175229	6175329	8662930	0	-	0.49	(0.455,0.49]	chr7	662676	11	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8:ENST00000478541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	196	2	3.23575	3.3965449999999997	3.55734	2.45435e-7	7.91456e-9	1.35788e-5	6.33169e-7
chr1	52396045	52396124	1018929	0	-	0.56962	(0.53,0.59]	chr1	105626	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.78899	3.3964600000000003	4.00393	0.0108084	0.00245784	0.064368	0.0221765
chr10	119898781	119898870	11285774	0	+	0.550562	(0.53,0.59]	chr10	859912	5	CDS	CDS:EXON_MRNA	SEC23IP	ENSG00000107651.14	ENST00000369075.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.78899	3.3964600000000003	4.00393	0.0108084	0.00245784	0.064368	0.0221765
chr2	277226	277304	1607894	0	+	0.551282	(0.53,0.59]	chr2	159798	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACP1	ENSG00000143727.16	ENST00000272067.10:ENST00000413140.5:ENST00000442386.5:ENST00000272065.10:ENST00000453390.5:ENST00000484464.5:ENST00000463831.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.78899	3.3964600000000003	4.00393	0.0108084	0.00245784	0.064368	0.0221765
chr20	38089775	38089875	17782054	0	+	0.58	(0.53,0.59]	chr20	1502504	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.78899	3.3964600000000003	4.00393	0.0108084	0.00245784	0.064368	0.0221765
chr11	9589095	9589194	11793802	0	+	0.363636	(0.36,0.39]	chr11	903118	6	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	2.63702	3.396425	4.15583	0.00212882	1.9188e-5	0.0206577	4.68725e-4
chr10	31823149	31823248	11440674	0	-	0.373737	(0.36,0.39]	chr10	872300	23	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000492028.5:ENST00000497103.1:ENST00000454919.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr11	73730764	73730794	12458326	0	-	0.366667	(0.36,0.39]	chr11	968414	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5:ENST00000541588.5:ENST00000545625.5:ENST00000540771.5:ENST00000537446.5:ENST00000400470.3:ENST00000541795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr11	111759803	111759877	12602301	0	-	0.364865	(0.36,0.39]	chr11	976987	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10:ENST00000393055.6:ENST00000534500.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr4	48382873	48382927	4826420	0	+	0.37037	(0.36,0.39]	chr4	397716	2	CDS	CDS:UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr5	55626029	55626122	6583946	0	-	0.387097	(0.36,0.39]	chr5	509649	3	UTR3	UTR3:EXON_MRNA	SLC38A9	ENSG00000177058.12	ENST00000505708.5:ENST00000515159.5:ENST00000416547.6:ENST00000318672.7:ENST00000396865.7:ENST00000508124.5:ENST00000515629.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr5	134859540	134859637	6232077	0	+	0.360825	(0.36,0.39]	chr5	485469	23	UTR3	UTR3:EXON_MRNA	C5orf24	ENSG00000181904.9	ENST00000394976.4:ENST00000504727.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr9	111451489	111451555	10799096	0	-	0.378788	(0.36,0.39]	chr9	817968	2	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chrX	135965123	135965174	19248584	0	-	0.372549	(0.36,0.39]	chrX	1635141	1	CDS	CDS:UTR3:EXON_MRNA	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000681201.1:ENST00000679621.1:ENST00000680510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.63115	3.39629	4.16143	0.0245975	0.00486719	0.114841	0.0366328
chr1	41027696	41027795	956547	0	-	0.353535	(0.33,0.36]	chr1	101228	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCMH1	ENSG00000010803.16	ENST00000397171.6:ENST00000361191.9:ENST00000361705.7:ENST00000402904.6:ENST00000397174.6:ENST00000372597.5:ENST00000372596.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000472037.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.7655	3.395765	4.02603	0.0175892	0.0071776	0.0918323	0.048188
chr21	29047133	29047227	18087438	0	+	0.351064	(0.33,0.36]	chr21	1533514	6	CDS	CDS:EXON_MRNA	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.7655	3.395765	4.02603	0.0175892	0.0071776	0.0918323	0.048188
chr19	572634	572701	17188222	0	+	0.716418	(0.59,1]	chr19	1410748	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	184	2	2.42023	3.395695	4.37116	4.43106e-4	5.7613e-7	0.0063176	2.49975e-5
chr17	40168202	40168273	16223466	0	+	0.577465	(0.53,0.59]	chr17	1311958	1	CDS	CDS:UTR3:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000577605.1:ENST00000583902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.62668	3.3952549999999997	4.16383	0.00659193	0.00157636	0.0454205	0.015761
chr17	41756174	41756214	16542987	0	-	0.525	(0.49,0.53]	chr17	1356262	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.56183	3.3950750000000003	4.22832	0.0261296	3.3186e-7	0.118976	1.5646e-5
chr19	38382174	38382233	17320757	0	+	0.508475	(0.49,0.53]	chr19	1433581	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592035.5:ENST00000590331.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	97	2	2.21243	3.3948650000000002	4.5773	8.04649e-4	1.76236e-8	0.0100063	1.26618e-6
chr10	99420623	99420714	11657663	0	-	0.604396	(0.59,1]	chr10	888051	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000471741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	28	2	2.77418	3.3948150000000004	4.01545	0.0251889	0.0160729	0.114168	0.0860154
chr5	181324323	181324413	6418621	0	+	0.666667	(0.59,1]	chr5	499845	4	EXON_LNCRNA	EXON_LNCRNA	AC138035.2	ENSG00000238035.8	ENST00000604354.1	lncRNA	lncRNA	lncRNA	lncRNA	1	28	2	2.77418	3.3948150000000004	4.01545	0.0251889	0.0160729	0.114168	0.0860154
chr9	128342152	128342240	10478200	0	+	0.613636	(0.59,1]	chr9	789888	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SLC27A4:TMSB4XP4	ENSG00000167114.13:ENSG00000223551.1	ENST00000300456.5:ENST00000372870.5:ENST00000323496.5	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	28	2	2.77418	3.3948150000000004	4.01545	0.0251889	0.0160729	0.114168	0.0860154
chr19	18386189	18386289	17258374	0	+	0.65	(0.59,1]	chr19	1425377	1	CDS_START	CDS_START:CDS:EXON_MRNA:PRIMIRNA	GDF15:MIR3189	ENSG00000130513.6:ENSG00000264175.1	ENST00000597765.1:ENST00000595973.2:ENST00000578735.1:ENST00000252809.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	4	87	2	2.78953	3.39475	3.99997	9.28839e-4	1.30803e-4	0.0105151	0.00243846
chr19	12884884	12884984	17471803	0	-	0.64	(0.59,1]	chr19	1463272	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KLF1	ENSG00000105610.6	ENST00000264834.6	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	3.39292	3.39471	3.3965	0.00192565	1.83913e-4	0.0191769	0.00296795
chr6	31642111	31642208	7661404	0	-	0.57732000000000006	(0.53,0.59]	chr6	584824	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2:ENST00000470875.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	3.30943	3.3946699999999996	3.47991	0.0018255	6.7738e-5	0.0183913	0.0013157
chr1	165727923	165728022	1341347	0	-	0.393939	(0.39,0.42]	chr1	137596	38	UTR3	UTR3:EXON_MRNA	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5	protein_coding	protein_coding	protein_coding	protein_coding	11	113	2	2.5274200000000002	3.394635	4.26185	2.09862e-4	2.3449e-9	0.00355193	2.21286e-7
chr12	98547957	98548057	13036865	0	+	0.27	[0,0.29]	chr12	1014988	2	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	3.09515	3.394635	3.69412	1.61124e-5	1.019e-7	4.49566e-4	5.66825e-6
chr5	176389330	176389397	6401939	0	+	0.716418	(0.59,1]	chr5	497303	1	CDS	CDS:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.24689	3.39436	4.54183	0.00890458	0.0070583	0.0565003	0.0478044
chr16	46660076	46660175	15927114	0	-	0.353535	(0.33,0.36]	chr16	1277396	41	UTR3	UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	3.34832	3.3941100000000004	3.4399	1.29517e-4	2.58174e-5	0.00242147	5.98209e-4
chr13	39012987	39013086	13976228	0	-	0.545455	(0.53,0.59]	chr13	1096566	4	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	48	2	2.45844	3.3940799999999998	4.32972	0.00930921	7.20871e-6	0.0587563	2.30406e-4
chr20	483760	483860	17871451	0	-	0.29	[0,0.29]	chr20	1511949	51	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	3.28583	3.3940349999999997	3.50224	0.00346525	7.95529e-4	0.0293796	0.009356
chr7	105116470	105116568	8970780	0	-	0.27551	[0,0.29]	chr7	686639	2	UTR3	UTR3:EXON_MRNA:INTRON	SRPK2	ENSG00000135250.17	ENST00000493638.1:ENST00000465072.5:ENST00000393651.8:ENST00000357311.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	3.28583	3.3940349999999997	3.50224	0.00346525	7.95529e-4	0.0293796	0.009356
chr12	120136501	120136578	13579080	0	-	0.584416	(0.53,0.59]	chr12	1068555	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000549815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.7898	3.3939950000000003	3.99819	0.0128364	0.0111308	0.0719798	0.0665375
chr16	69756721	69756815	15995184	0	-	0.56383	(0.53,0.59]	chr16	1284292	3	EXON_PSEUDO	EXON_PSEUDO	CTD-2033A16.2	ENSG00000260290.2	ENST00000566277.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	19	2	2.7898	3.3939950000000003	3.99819	0.0128364	0.0111308	0.0719798	0.0665375
chr17	7258591	7258689	16103771	0	+	0.571429	(0.53,0.59]	chr17	1296217	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELP5	ENSG00000170291.15	ENST00000573513.5:ENST00000354429.6:ENST00000356683.6:ENST00000396627.6:ENST00000396628.6:ENST00000574993.5:ENST00000570322.5:ENST00000576496.5:ENST00000571146.2:ENST00000572104.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.7898	3.3939950000000003	3.99819	0.0128364	0.0111308	0.0719798	0.0665375
chr17	42522194	42522291	16228829	0	+	0.536082	(0.53,0.59]	chr17	1313004	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0A1	ENSG00000033627.17	ENST00000343619.9:ENST00000264649.10:ENST00000544137.5:ENST00000585828.5:ENST00000592831.1:ENST00000587797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	2.7898	3.3939950000000003	3.99819	0.0128364	0.0111308	0.0719798	0.0665375
chr16	31121031	31121118	15633224	0	+	0.413793	(0.39,0.42]	chr16	1241128	7	EXON_MRNA	EXON_MRNA:INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6:ENST00000539683.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.69374	3.393965	4.09419	0.00386013	2.95839e-5	0.0310764	7.34143e-4
chr11	72014775	72014874	12447158	0	-	0.565657	(0.53,0.59]	chr11	967275	20	CDS	CDS:EXON_MRNA:INTRON	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.35511	3.39395	4.43279	0.0445399	0.0026472	0.172163	0.0231864
chr11	118506053	118506151	12158976	0	+	0.571429	(0.53,0.59]	chr11	937104	38	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000534085.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.35511	3.39395	4.43279	0.0445399	0.0026472	0.172163	0.0231864
chr14	69708676	69708761	14374957	0	+	0.576471	(0.53,0.59]	chr14	1123270	1	CDS	CDS:EXON_MRNA	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.35511	3.39395	4.43279	0.0445399	0.0026472	0.172163	0.0231864
chr9	133153576	133153676	10879519	0	-	0.59	(0.53,0.59]	chr9	825592	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.35511	3.39395	4.43279	0.0445399	0.0026472	0.172163	0.0231864
chr1	90030179	90030278	349502	0	+	0.393939	(0.39,0.42]	chr1	34239	26	UTR3	UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	1.99911	3.393945	4.78878	0.0477207	4.27222e-4	0.17993	0.00577513
chr5	80637945	80638009	6667471	0	-	0.40625	(0.39,0.42]	chr5	514729	2	CDS	CDS:EXON_MRNA:INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	1.99911	3.393945	4.78878	0.0477207	4.27222e-4	0.17993	0.00577513
chr5	25189848	25189946	6504026	0	-	0.306122	(0.29,0.33]	chr5	504194	12	INTRON	INTRON	LINC02228	ENSG00000251273.4	ENST00000641970.1:ENST00000641261.2:ENST00000507600.2:ENST00000670589.1:ENST00000662466.1	lncRNA	lncRNA	lncRNA	lncRNA	8	61	2	3.29722	3.393785	3.49035	9.57168e-6	4.16642e-6	2.66171e-4	1.46163e-4
chr16	53156285	53156382	15665892	0	+	0.329897	(0.29,0.33]	chr16	1245065	2	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.92065	3.39358	3.86651	0.0117842	0.0112245	0.0686664	0.0665375
chr4	105717713	105717794	5028154	0	+	0.308642	(0.29,0.33]	chr4	409288	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GSTCD	ENSG00000138780.15	ENST00000512828.1:ENST00000394730.7:ENST00000515279.6:ENST00000515255.5:ENST00000484843.1:ENST00000507281.5:ENST00000360505.9:ENST00000510865.5:ENST00000509336.5:ENST00000394728.4:ENST00000503409.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	12	2	2.92065	3.39358	3.86651	0.0117842	0.0112245	0.0686664	0.0665375
chr7	137969772	137969872	9097985	0	-	0.33	(0.29,0.33]	chr7	694107	360	INTRON	INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.92065	3.39358	3.86651	0.0117842	0.0112245	0.0686664	0.0665375
chr9	37438970	37439067	10644790	0	-	0.309278	(0.29,0.33]	chr9	805686	10	UTR3	UTR3:EXON_MRNA	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.92065	3.39358	3.86651	0.0117842	0.0112245	0.0686664	0.0665375
chr2	197503208	197503259	2292633	0	+	0.352941	(0.33,0.36]	chr2	207885	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPE1:HSPE1-MOB4	ENSG00000115541.11:ENSG00000270757.1	ENST00000409729.1:ENST00000233893.10:ENST00000409468.1:ENST00000604458.1:ENST00000465573.1:ENST00000463841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	25	2	2.10153	3.3935649999999997	4.6856	0.00871844	3.92435e-4	0.0560911	0.00583618
chr1	182881263	182881344	595123	0	+	0.518519	(0.49,0.53]	chr1	61655	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000474446.5:ENST00000485081.5:ENST00000473076.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	2.95385	3.39352	3.83319	2.87717e-4	1.34601e-4	0.00423277	0.00249552
chr12	54500532	54500625	12893658	0	+	0.408602	(0.39,0.42]	chr12	1003093	1	CDS	CDS:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000547500.1:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.88836	3.39342	3.89848	0.0102432	9.30194e-5	0.062872	0.00169783
chr5	181257389	181257487	6418203	0	+	0.418367	(0.39,0.42]	chr5	499764	18	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	CTC-338M12.4	ENSG00000233937.7	ENST00000506340.2:ENST00000511331.5:ENST00000505151.5:ENST00000417281.2:ENST00000599439.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	29	2	2.88836	3.39342	3.89848	0.0102432	9.30194e-5	0.062872	0.00169783
chr10	96521965	96522064	11640098	0	-	0.383838	(0.36,0.39]	chr10	886559	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	2.88762	3.3933999999999997	3.89918	4.35345e-4	1.0624e-4	0.005869	0.00205241
chr3	129274906	129274976	3730609	0	+	0.457143	(0.455,0.49]	chr3	318977	2	CDS	CDS:UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000514478.1:ENST00000512034.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.58479	3.39334	4.20189	0.00397662	0.00200187	0.0322851	0.0189555
chr11	59581455	59581554	12400665	0	-	0.414141	(0.39,0.42]	chr11	959417	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6:ENST00000525357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	3.02517	3.3932900000000004	3.76141	8.3811e-4	2.14058e-4	0.00981548	0.00359478
chr10	5794951	5795019	11352750	0	-	0.426471	(0.42,0.455]	chr10	865765	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.72686	3.3932	4.05954	0.00617886	0.00330337	0.0439741	0.027613
chr2	238233940	238234040	2457470	0	+	0.36	(0.33,0.36]	chr2	221963	3	SS5_PROX	SS5_PROX:INTRON	AC096574.4	ENSG00000225057.2	ENST00000456601.1	lncRNA	lncRNA	lncRNA	lncRNA	4	24	2	1.69981	3.39318	5.08655	0.0370662	4.6453e-5	0.145667	0.00106753
chr22	41636685	41636770	18381435	0	+	0.564706	(0.53,0.59]	chr22	1564687	3	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.75178	3.393155	4.03453	8.47358e-4	4.6e-5	0.0104407	9.56296e-4
chr5	138187240	138187313	6243593	0	+	0.452055	(0.42,0.455]	chr5	486390	3	CDS	CDS:UTR3:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5:ENST00000502338.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.7523	3.393065	4.03383	0.0153283	4.24324e-5	0.0828908	8.98949e-4
chr1	109323026	109323121	1219567	0	-	0.452632	(0.42,0.455]	chr1	118962	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.91373	3.39303	3.87233	0.00892357	4.86008e-6	0.0567495	1.51731e-4
chr17	82624091	82624190	16713308	0	-	0.494949	(0.49,0.53]	chr17	1378787	19	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000573656.5:ENST00000571835.5:ENST00000573616.5:ENST00000571767.5:ENST00000571817.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	56	2	2.78773	3.39303	3.99833	0.00257389	1.95792e-6	0.0235767	7.01677e-5
chr9	92260150	92260234	10737239	0	-	0.428571	(0.42,0.455]	chr9	812298	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	39	2	1.77028	3.39295	5.01562	0.0100387	1.01971e-4	0.0623355	0.0019861
chr2	74208649	74208721	1891675	0	+	0.458333	(0.455,0.49]	chr2	179179	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	79	2	2.61558	3.3928200000000004	4.17006	0.00184897	4.03133e-8	0.0185736	2.56372e-6
chr8	127738840	127738929	9612656	0	+	0.629214	(0.59,1]	chr8	728490	3	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	6	132	2	2.88344	3.392735	3.90203	2.63483e-4	1.11836e-5	0.00427022	3.02696e-4
chr12	120196772	120196872	13579729	0	-	0.55	(0.53,0.59]	chr12	1068798	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000551217.1:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	499	2	3.33128	3.3926350000000003	3.45399	4.13369e-8	5.57595e-10	2.89671e-6	6.25514e-8
chr22	43159238	43159338	18386595	0	+	0.73	(0.59,1]	chr22	1565614	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TSPO	ENSG00000100300.18	ENST00000583777.5:ENST00000337554.8:ENST00000472378.1:ENST00000428336.5:ENST00000329563.8:ENST00000396265.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.5215	3.39252	4.26354	0.032241	0.0134233	0.135671	0.0743429
chr4	52712459	52712527	4829905	0	+	0.691176	(0.59,1]	chr4	398205	3	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	MIR4449:DANCR:LINC01618	ENSG00000264585.1:ENSG00000226950.8:ENSG00000250302.3	ENST00000578365.1:ENST00000411630.7:ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	1	27	2	2.5215	3.39252	4.26354	0.032241	0.0134233	0.135671	0.0743429
chr11	74965762	74965843	12021442	0	+	0.382716	(0.36,0.39]	chr11	926794	1	CDS	CDS:EXON_MRNA:INTRON	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000532972.5:ENST00000263672.11:ENST00000528265.1:ENST00000527225.1:ENST00000526883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.54205	3.3919949999999996	4.24194	0.00276729	0.00253891	0.0247437	0.0227257
chr16	1699779	1699877	15488678	0	+	0.44898	(0.42,0.455]	chr16	1226188	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.76161	3.391985	4.02236	9.19052e-4	1.61783e-6	0.0111046	5.98677e-5
chr10	91227336	91227425	11187221	0	+	0.483146	(0.455,0.49]	chr10	850389	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6:ENST00000490164.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	3.12843	3.39194	3.65545	0.00392855	3.50134e-4	0.0322851	0.0049086
chr9	76399487	76399586	10312903	0	+	0.575758	(0.53,0.59]	chr9	776488	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP9	ENSG00000234618.1	ENST00000418207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	69	2	3.11992	3.391905	3.66389	1.09102e-4	2.13854e-5	0.00194222	5.67072e-4
chr17	28697905	28697967	16177197	0	+	0.403226	(0.39,0.42]	chr17	1305454	1	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000581510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	3.0503	3.39162	3.73294	0.0190864	0.00570576	0.0958835	0.0424438
chr20	21357735	21357792	17734768	0	+	0.403509	(0.39,0.42]	chr20	1496547	1	CDS	CDS:EXON_MRNA	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.0503	3.39162	3.73294	0.0190864	0.00570576	0.0958835	0.0424438
chr3	196236428	196236527	4663875	0	-	0.40404	(0.39,0.42]	chr3	385717	22	UTR3	UTR3:EXON_MRNA:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.0503	3.39162	3.73294	0.0190864	0.00570576	0.0958835	0.0424438
chr8	9780279	9780377	9192963	0	+	0.408163	(0.39,0.42]	chr8	702351	37	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	3.0503	3.39162	3.73294	0.0190864	0.00570576	0.0958835	0.0424438
chr1	154602248	154602342	1303761	0	-	0.553191	(0.53,0.59]	chr1	131424	1	CDS	CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1:ENST00000526905.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.34461	3.3916199999999996	4.43863	0.0457008	0.00254763	0.168044	0.0233955
chr11	65341398	65341480	11984023	0	+	0.560976	(0.53,0.59]	chr11	920269	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000444314.6:ENST00000415073.6:ENST00000530993.5:ENST00000252268.8:ENST00000524666.5:ENST00000532264.5:ENST00000532102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.34461	3.3916199999999996	4.43863	0.0457008	0.00254763	0.168044	0.0233955
chr19	6535161	6535256	17213528	0	+	0.578947	(0.53,0.59]	chr19	1415924	2	UTR3	UTR3:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.34461	3.3916199999999996	4.43863	0.0457008	0.00254763	0.168044	0.0233955
chr7	32868268	32868366	8759789	0	-	0.530612	(0.53,0.59]	chr7	668168	2	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.11	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.34461	3.3916199999999996	4.43863	0.0457008	0.00254763	0.168044	0.0233955
chr7	143862900	143863000	9116847	0	-	0.59	(0.53,0.59]	chr7	696356	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	2.34461	3.3916199999999996	4.43863	0.0457008	0.00254763	0.168044	0.0233955
chr4	87893718	87893817	4942253	0	+	0.565657	(0.53,0.59]	chr4	406011	20	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	95	2	2.56695	3.391605	4.21626	2.3382e-4	4.24424e-7	0.00385436	1.92304e-5
chr11	43494277	43494370	11921424	0	+	0.537634	(0.53,0.59]	chr11	911050	5	UTR3	UTR3:EXON_MRNA	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000525543.5:ENST00000533072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr12	7157660	7157746	12717467	0	+	0.581395	(0.53,0.59]	chr12	987740	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535313.2:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr16	67880642	67880729	15712354	0	+	0.574713	(0.53,0.59]	chr16	1250763	2	CDS	CDS:EXON_MRNA	EDC4	ENSG00000038358.15	ENST00000358933.10:ENST00000572221.5:ENST00000573992.5:ENST00000577028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr2	218274687	218274785	3186635	0	-	0.561224	(0.53,0.59]	chr2	279898	6	UTR3	UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr20	36653619	36653701	17957214	0	-	0.585366	(0.53,0.59]	chr20	1521499	1	CDS	CDS:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr8	37740364	37740446	9289884	0	+	0.548781	(0.53,0.59]	chr8	710325	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ERLIN2	ENSG00000147475.17	ENST00000519872.1:ENST00000518526.5:ENST00000523887.5:ENST00000519638.3:ENST00000648919.1:ENST00000521993.3:ENST00000518586.5:ENST00000335171.10:ENST00000521644.5:ENST00000523107.5:ENST00000647813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr8	140524450	140524550	10132087	0	-	0.58	(0.53,0.59]	chr8	760954	44	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.77921	3.39157	4.00393	0.0132865	0.0108084	0.0740932	0.064368
chr7	128084786	128084850	8519296	0	+	0.53125	(0.53,0.59]	chr7	649797	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1	protein_coding	protein_coding	protein_coding	protein_coding	8	115	2	3.0459	3.39147	3.73704	1.68929e-4	9.75063e-8	0.00297945	5.46214e-6
chr1	10033483	10033576	36365	0	+	0.483871	(0.455,0.49]	chr1	4273	8	UTR5	UTR5:EXON_MRNA	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000377153.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.96925	3.391	3.81275	0.0138827	0.00698725	0.0760883	0.0473262
chr20	24968891	24968987	17931304	0	-	0.46875	(0.455,0.49]	chr20	1517959	1	CDS	CDS:EXON_MRNA	APMAP	ENSG00000101474.12	ENST00000217456.3:ENST00000451442.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.96925	3.391	3.81275	0.0138827	0.00698725	0.0760883	0.0473262
chr3	37016817	37016915	4118139	0	-	0.469388	(0.455,0.49]	chr3	344290	4	EXON_PSEUDO	EXON_PSEUDO	RPL29P11	ENSG00000224858.5	ENST00000494408.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.96925	3.391	3.81275	0.0138827	0.00698725	0.0760883	0.0473262
chr3	39391936	39392021	3423712	0	+	0.458824	(0.455,0.49]	chr3	297962	2	CDS	CDS:EXON_MRNA	SLC25A38	ENSG00000144659.13	ENST00000650617.1:ENST00000645630.1:ENST00000648579.1:ENST00000642683.1:ENST00000645280.1:ENST00000643672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.96925	3.391	3.81275	0.0138827	0.00698725	0.0760883	0.0473262
chr7	23319195	23319254	8724284	0	-	0.457627	(0.455,0.49]	chr7	666032	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.96925	3.391	3.81275	0.0138827	0.00698725	0.0760883	0.0473262
chr8	17274902	17274958	9211869	0	+	0.464286	(0.455,0.49]	chr8	703727	2	CDS	CDS:UTR3:EXON_MRNA	VPS37A	ENSG00000155975.10	ENST00000520140.5:ENST00000324849.9:ENST00000425020.6:ENST00000521829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.96925	3.391	3.81275	0.0138827	0.00698725	0.0760883	0.0473262
chr18	35336053	35336151	17076677	0	-	0.44898	(0.42,0.455]	chr18	1402842	40	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.54043	3.39088	4.24133	0.00705852	0.00326918	0.047732	0.0282494
chr8	95154893	95154993	9492385	0	+	0.45	(0.42,0.455]	chr8	722327	2	UTR3	UTR3:EXON_MRNA	PLEKHF2	ENSG00000175895.4	ENST00000315367.4:ENST00000519516.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.54043	3.39088	4.24133	0.00705852	0.00326918	0.047732	0.0282494
chr12	6748087	6748179	13188349	0	-	0.597826	(0.59,1]	chr12	1032664	2	UTR3	UTR3:EXON_MRNA	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000435120.5	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	2.81487	3.39071	3.96655	1.6995e-4	1.54087e-4	0.00279744	0.00276512
chr4	55599145	55599181	5433416	0	-	0.472222	(0.455,0.49]	chr4	434880	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5:ENST00000509371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	150	2	3.18852	3.39067	3.59282	7.41674e-5	5.58016e-9	0.00156055	4.69792e-7
chr7	56104225	56104308	8827440	0	-	0.566265	(0.53,0.59]	chr7	673698	1	CDS	CDS:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	193	2	3.28346	3.390485	3.49751	1.54606e-6	3.53045e-8	6.35187e-5	2.2907e-6
chr15	74844985	74845082	15375880	0	-	0.587629	(0.53,0.59]	chr15	1215472	14	UTR3	UTR3:EXON_MRNA	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000566480.5:ENST00000563663.5:ENST00000563829.5:ENST00000569251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	3.2308500000000002	3.3904300000000003	3.55001	6.11776e-4	2.81517e-4	0.00818575	0.00415519
chr14	94727076	94727175	14470719	0	+	0.555556	(0.53,0.59]	chr14	1130296	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP4	ENSG00000239269.1	ENST00000488229.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	58	2	3.33569	3.39039	3.44509	1.57373e-4	8.31409e-5	0.00260854	0.00171126
chr22	21856325	21856425	18443325	0	-	0.54	(0.53,0.59]	chr22	1572552	481	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.65775	3.39038	5.12301	0.0573191	1.2852e-4	0.196623	0.00241206
chr20	31566209	31566295	17748787	0	+	0.604651	(0.59,1]	chr20	1497910	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000649374.1:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000649583.1:ENST00000460389.5:ENST00000494153.5:ENST00000472128.5:ENST00000474466.5:ENST00000468559.5:ENST00000619859.1:ENST00000493364.1:ENST00000487281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	98	2	3.28861	3.3901649999999997	3.49172	0.0028753	2.24457e-5	0.0256141	5.34605e-4
chr1	16861875	16861974	74794	0	+	0.555556	(0.53,0.59]	chr1	8638	27	INTRON	INTRON	CROCC	ENSG00000058453.17	ENST00000466256.6	protein_coding	processed_transcript	protein_coding	processed_transcript	214	2610	2	2.58765	3.38996	4.19227	2.09986e-7	1e-12	1.05955e-5	2.46312e-10
chr5	134200984	134201074	6844149	0	-	0.455556	(0.455,0.49]	chr5	523684	1	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000495833.1:ENST00000522385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	2.76399	3.3897900000000005	4.01559	8.75629e-4	1.68211e-6	0.0106963	6.18007e-5
chr2	135645452	135645527	2082148	0	+	0.56	(0.53,0.59]	chr2	195324	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000443537.2:ENST00000441871.5:ENST00000429703.6:ENST00000425804.1:ENST00000487294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	46	2	3.38538	3.38977	3.39416	0.00126006	1.18366e-4	0.013837	0.00207204
chr2	218279037	218279091	3186693	0	-	0.518519	(0.49,0.53]	chr2	279935	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5:ENST00000492966.5:ENST00000466012.5:ENST00000429501.5:ENST00000425694.5:ENST00000476429.5:ENST00000495113.5:ENST00000418569.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.26641	3.3897649999999997	4.51312	0.0190546	0.00156636	0.093872	0.0156889
chr17	28319199	28319239	16175180	0	+	0.6	(0.59,1]	chr17	1304955	1	UTR5	UTR5:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.66274	3.38973	4.11672	0.0222273	0.00482151	0.105595	0.0365653
chr10	104259649	104259723	11236775	0	+	0.5	(0.49,0.53]	chr10	856312	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSTO1	ENSG00000148834.13	ENST00000470554.5:ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	110	2	3.25191	3.3896699999999997	3.52743	7.08867e-6	8.36778e-7	2.27895e-4	3.42971e-5
chr7	156855479	156855579	9147381	0	-	0.32	(0.29,0.33]	chr7	699283	182	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	3.13212	3.389605	3.64709	0.00551048	3.76873e-4	0.0414592	0.00523508
chr19	39433665	39433761	17563227	0	-	0.552083	(0.53,0.59]	chr19	1475628	2	CDS	CDS:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000602153.5:ENST00000595386.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	41	507	2	3.32887	3.38952	3.45017	1.66415e-8	7.28394e-10	1.31715e-6	7.90431e-8
chr3	196060179	196060247	4663251	0	-	0.411765	(0.39,0.42]	chr3	385581	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	148	2	2.93979	3.3894599999999997	3.83913	9.95246e-7	2.63574e-8	3.97538e-5	1.95364e-6
chr5	75355443	75355522	6037109	0	+	0.493671	(0.49,0.53]	chr5	473640	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000508070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	82	2	3.36911	3.3892550000000004	3.4094	2.16178e-5	3.97949e-6	5.71712e-4	1.28529e-4
chr6	31636278	31636348	7115917	0	+	0.542857	(0.53,0.59]	chr6	545901	2	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000487839.1:ENST00000492691.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	110	2	2.24306	3.3891549999999997	4.53525	6.65216e-4	3.21237e-8	0.00867533	2.1166e-6
chr10	119069445	119069514	11717548	0	-	0.391304	(0.39,0.42]	chr10	893844	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr11	47783072	47783135	12389377	0	-	0.396825	(0.39,0.42]	chr11	957399	1	CDS	CDS:EXON_MRNA:INTRON	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr11	105486917	105487016	12577610	0	-	0.414141	(0.39,0.42]	chr11	975541	281	INTRON	INTRON	CARD18	ENSG00000255501.3	ENST00000649856.1:ENST00000528811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr16	23658515	23658615	15595008	0	+	0.42	(0.39,0.42]	chr16	1236673	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000568589.5:ENST00000563188.5:ENST00000566298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr17	65012566	65012666	16642806	0	-	0.42	(0.39,0.42]	chr17	1368930	34	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr4	177353643	177353728	5243409	0	+	0.4	(0.39,0.42]	chr4	421951	5	CDS	CDS:UTR3:EXON_MRNA	NEIL3	ENSG00000109674.4	ENST00000264596.4:ENST00000513321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr5	74721117	74721175	6036687	0	+	0.396552	(0.39,0.42]	chr5	473510	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HEXB	ENSG00000049860.14	ENST00000511181.5:ENST00000261416.12:ENST00000513336.5:ENST00000503312.5:ENST00000513539.1:ENST00000509579.1:ENST00000505859.1:ENST00000513867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr8	124485830	124485930	9593365	0	+	0.4	(0.39,0.42]	chr8	727737	1	CDS	CDS:UTR5:EXON_MRNA	RNF139	ENSG00000170881.5	ENST00000303545.4:ENST00000517684.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.49701	3.389145	4.28128	0.0339607	0.00342611	0.141431	0.0283456
chr12	7921015	7921114	13193173	0	-	0.474747	(0.455,0.49]	chr12	1033481	19	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	2.35464	3.389065	4.42349	8.71378e-4	3.27827e-6	0.0106963	1.08637e-4
chr20	839446	839534	17872619	0	-	0.556818	(0.53,0.59]	chr20	1512128	1	EXON_PSEUDO	EXON_PSEUDO	RPS10P5	ENSG00000101278.6	ENST00000492704.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	36	2	2.90978	3.388935	3.86809	0.00857883	1.18973e-4	0.0552386	0.00207755
chr9	7477632	7477731	10545926	0	-	0.494949	(0.49,0.53]	chr9	799719	7	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	70	2	3.25244	3.38879	3.52514	4.98361e-5	1.25784e-5	0.0011306	3.31924e-4
chr3	169483370	169483470	4570691	0	-	0.53	(0.49,0.53]	chr3	378345	1015	INTRON	INTRON	MECOM	ENSG00000085276.19	ENST00000651503.2:ENST00000494292.6:ENST00000485957.1:ENST00000486748.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.87563	3.3887850000000004	3.90194	1.52968e-4	9.11374e-5	0.00254995	0.00182992
chr17	21002048	21002146	16477806	0	-	0.489796	(0.455,0.49]	chr17	1346694	26	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	3.11002	3.388705	3.66739	1.15314e-4	2.02214e-5	0.0020426	5.39633e-4
chr1	212100528	212100621	701688	0	+	0.526882	(0.49,0.53]	chr1	71173	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	1.69633	3.38847	5.08061	0.0531914	1.00361e-4	0.184818	0.00196575
chr8	37862794	37862894	9794205	0	-	0.52	(0.49,0.53]	chr8	740400	43	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	1.69633	3.38847	5.08061	0.0531914	1.00361e-4	0.184818	0.00196575
chr12	76355588	76355688	13424333	0	-	0.35	(0.33,0.36]	chr12	1056701	39	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.64851	3.388455	4.1284	0.00492353	0.00407303	0.0366648	0.0324137
chr2	222918045	222918100	2406088	0	+	0.381818	(0.36,0.39]	chr2	216571	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000540115.1:ENST00000463813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	65	2	2.16717	3.38833	4.60949	0.0152504	1.11579e-8	0.0828908	8.51066e-7
chr13	39013880	39013979	13976237	0	-	0.535354	(0.53,0.59]	chr13	1096566	13	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	79	2	2.76647	3.38821	4.00995	2.92577e-4	1.99748e-6	0.00464297	7.14901e-5
chr14	94051129	94051190	14775139	0	-	0.459016	(0.455,0.49]	chr14	1157265	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000553451.1:ENST00000553400.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1:ENST00000556635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.85172	3.388175	3.92463	0.0113417	0.010864	0.0665375	0.0643837
chr21	43756459	43756558	18136162	0	+	0.484848	(0.455,0.49]	chr21	1538360	5	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.85172	3.388175	3.92463	0.0113417	0.010864	0.0665375	0.0643837
chrX	18258179	18258247	18974820	0	-	0.455882	(0.455,0.49]	chrX	1615667	3	CDS	CDS:EXON_MRNA	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.85172	3.388175	3.92463	0.0113417	0.010864	0.0665375	0.0643837
chrX	155033402	155033477	18918927	0	+	0.466667	(0.455,0.49]	chrX	1612355	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUNDC2	ENSG00000165775.18	ENST00000475165.5:ENST00000369498.8:ENST00000484175.5:ENST00000485289.5:ENST00000456179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.85172	3.388175	3.92463	0.0113417	0.010864	0.0665375	0.0643837
chr1	222669298	222669397	1520081	0	-	0.464646	(0.455,0.49]	chr1	151835	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AIDA	ENSG00000186063.13	ENST00000474863.5:ENST00000340020.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.75587	3.388135	4.0204	0.00736097	0.00293507	0.0490627	0.025146
chr6	4117307	4117379	7575722	0	-	0.458333	(0.455,0.49]	chr6	578125	1	CDS	CDS:UTR3:EXON_MRNA	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000464583.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.75587	3.388135	4.0204	0.00736097	0.00293507	0.0490627	0.025146
chr11	130144129	130144226	12207137	0	+	0.463918	(0.455,0.49]	chr11	942093	8	UTR3	UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000338167.10:ENST00000263574.9:ENST00000278756.7:ENST00000525604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	3.33595	3.388105	3.44026	8.71641e-5	2.70224e-5	0.00177086	6.22285e-4
chr2	27217024	27217101	1691472	0	+	0.506494	(0.49,0.53]	chr2	165637	2	UTR3	UTR3:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000405489.7:ENST00000472515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.04107	3.3880049999999997	3.73494	0.0189345	0.00533879	0.0934721	0.0392268
chr5	159951223	159951315	6945500	0	-	0.5	(0.49,0.53]	chr5	531788	9	EXON_PSEUDO	EXON_PSEUDO	GAPDHP40	ENSG00000248626.1	ENST00000505218.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	3.04107	3.3880049999999997	3.73494	0.0189345	0.00533879	0.0934721	0.0392268
chr6	61574327	61574402	7204153	0	+	0.52	(0.49,0.53]	chr6	556437	1	EXON_PSEUDO	EXON_PSEUDO	MTRNR2L9	ENSG00000255633.5	ENST00000622562.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	3.04107	3.3880049999999997	3.73494	0.0189345	0.00533879	0.0934721	0.0392268
chr7	154968764	154968854	9140095	0	-	0.522222	(0.49,0.53]	chr7	698830	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PAXIP1	ENSG00000157212.19	ENST00000457196.5:ENST00000404141.6:ENST00000397192.5:ENST00000473219.5:ENST00000475066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	3.04107	3.3880049999999997	3.73494	0.0189345	0.00533879	0.0934721	0.0392268
chr9	121341354	121341408	10836423	0	-	0.5	(0.49,0.53]	chr9	820986	2	CDS	CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	3.04107	3.3880049999999997	3.73494	0.0189345	0.00533879	0.0934721	0.0392268
chrX	101356195	101356268	19151269	0	-	0.520548	(0.49,0.53]	chrX	1628582	3	CDS	CDS:EXON_MRNA:INTRON	BTK	ENSG00000010671.16	ENST00000621635.4:ENST00000372880.5:ENST00000618050.4:ENST00000308731.8:ENST00000478995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	3.04107	3.3880049999999997	3.73494	0.0189345	0.00533879	0.0934721	0.0392268
chr3	129252280	129252361	3730357	0	+	0.444444	(0.42,0.455]	chr3	318877	1	CDS	CDS:UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000513965.5:ENST00000515725.5:ENST00000504350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.47379	3.3877800000000002	4.30177	0.00996858	7.69083e-6	0.0621728	2.20857e-4
chr13	27253776	27253843	13657843	0	+	0.432836	(0.42,0.455]	chr13	1076391	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL21	ENSG00000122026.11	ENST00000473558.5:ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000466550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	176	2	3.13462	3.3875200000000003	3.64042	4.44797e-6	3.67534e-9	1.54689e-4	3.26109e-7
chr17	54914638	54914690	16271067	0	+	0.480769	(0.455,0.49]	chr17	1319890	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TOM1L1	ENSG00000141198.16	ENST00000570371.5:ENST00000570965.5:ENST00000445275.6:ENST00000348161.8:ENST00000576932.5:ENST00000572405.5:ENST00000572158.5:ENST00000575882.6:ENST00000571319.5:ENST00000536554.5:ENST00000572298.5:ENST00000575333.5:ENST00000572360.5:ENST00000570499.5:ENST00000572576.5:ENST00000575909.1:ENST00000570977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.50904	3.387485	4.26593	0.0310515	0.00372962	0.131262	0.0302984
chr3	51668073	51668172	3475341	0	+	0.484848	(0.455,0.49]	chr3	303723	48	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.50904	3.387485	4.26593	0.0310515	0.00372962	0.131262	0.0302984
chr6	21231136	21231234	7082596	0	+	0.479592	(0.455,0.49]	chr6	541578	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1:ENST00000476517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.50904	3.387485	4.26593	0.0310515	0.00372962	0.131262	0.0302984
chr8	22250418	22250518	9223583	0	+	0.48	(0.455,0.49]	chr8	705499	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8:ENST00000518039.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.50904	3.387485	4.26593	0.0310515	0.00372962	0.131262	0.0302984
chr9	37588691	37588784	10645863	0	-	0.354839	(0.33,0.36]	chr9	805786	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-613M10.8:TOMM5:RP11-613M10.9	ENSG00000256966.6:ENSG00000175768.13:ENSG00000255872.3	ENST00000541804.1:ENST00000544475.5:ENST00000537239.2:ENST00000540941.1:ENST00000540557.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3:ENST00000544379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	52	2	3.34832	3.387445	3.42657	2.58174e-5	2.3079e-5	6.0378e-4	5.98209e-4
chr12	6514328	6514392	12713364	0	+	0.515625	(0.49,0.53]	chr12	986530	2	CDS	CDS:UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000545732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.33324	3.3873699999999998	3.4415	0.00162947	9.98297e-4	0.0169972	0.0111246
chr17	57839782	57839882	16610255	0	-	0.52	(0.49,0.53]	chr17	1364253	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPS23	ENSG00000181610.13	ENST00000313608.13	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	3.33324	3.3873699999999998	3.4415	0.00162947	9.98297e-4	0.0169972	0.0111246
chr20	5106187	5106248	17887702	0	-	0.508197	(0.49,0.53]	chr20	1514043	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10:ENST00000379276.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	3.33324	3.3873699999999998	3.4415	0.00162947	9.98297e-4	0.0169972	0.0111246
chr1	202727476	202727574	1451699	0	-	0.346939	(0.33,0.36]	chr1	145774	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	29	2	2.93884	3.3873499999999996	3.83586	0.00135211	1.7178e-4	0.0140654	0.00302124
chr16	18793152	18793251	15877077	0	-	0.434343	(0.42,0.455]	chr16	1269296	16	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	135	2	3.3735	3.3873249999999997	3.40115	1.63366e-6	1.14829e-7	6.65292e-5	6.30201e-6
chr13	25312927	25312979	13647668	0	+	0.442308	(0.42,0.455]	chr13	1075854	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000490231.5:ENST00000465068.5:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000495460.1:ENST00000381747.7:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	47	2	3.31073	3.38729	3.46385	1.94134e-4	7.26611e-5	0.00332542	0.00139386
chr9	120816637	120816734	10833855	0	-	0.443299	(0.42,0.455]	chr9	820467	7	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	8	88	2	3.31035	3.38725	3.46415	3.43313e-5	7.99201e-7	8.37726e-4	3.30403e-5
chr20	35557424	35557504	17769483	0	+	0.4875	(0.455,0.49]	chr20	1501151	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000442139.5:ENST00000451605.1:ENST00000488935.5:ENST00000488384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	64	2	3.05529	3.387145	3.719	4.88038e-5	1.42274e-5	0.00100497	4.02509e-4
chr19	21180436	21180535	17271128	0	+	0.272727	[0,0.29]	chr19	1427158	46	INTRON	INTRON	ZNF431	ENSG00000196705.8	ENST00000600692.5:ENST00000599296.5:ENST00000594425.5:ENST00000311048.11:ENST00000598331.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.99212	3.38712	3.78212	0.0069187	3.32518e-4	0.0473262	0.00506816
chr1	108992558	108992651	396812	0	+	0.376344	(0.36,0.39]	chr1	38396	4	EXON_PSEUDO	EXON_PSEUDO	RP11-20O24.4	ENSG00000244716.3	ENST00000414070.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	48	2	3.16621	3.387025	3.60784	8.32577e-5	3.79774e-5	0.00157156	9.11358e-4
chr15	58693029	58693125	15311652	0	-	0.375	(0.36,0.39]	chr15	1208368	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	ADAM10:HSP90AB4P	ENSG00000137845.15:ENSG00000282100.1	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1:ENST00000631455.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	2	26	2	3.02397	3.3870199999999997	3.75007	0.00674398	2.12157e-4	0.0461258	0.00329275
chr5	37294328	37294396	6539971	0	-	0.352941	(0.33,0.36]	chr5	506507	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.00765	3.38695	4.76625	0.0287001	3.84608e-4	0.128757	0.00531017
chr1	28743497	28743595	118417	0	+	0.428571	(0.42,0.455]	chr1	14542	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.99666	3.38666	3.77666	0.00104775	1.85215e-4	0.0123035	0.00296795
chr19	42230793	42230867	17573397	0	-	0.554054	(0.53,0.59]	chr19	1477644	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	AC006486.14:GSK3A	ENSG00000288671.1:ENSG00000105723.13	ENST00000678490.1:ENST00000677025.1:ENST00000222330.8:ENST00000398249.8:ENST00000679257.1:ENST00000453535.1:ENST00000677702.1:ENST00000493059.1:ENST00000679279.1:ENST00000678692.1:ENST00000678008.1:ENST00000677575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	3.29875	3.38647	3.47419	0.00191422	8.75273e-4	0.018324	0.0106963
chr6	27808309	27808405	7105128	0	+	0.677083	(0.59,1]	chr6	543451	1	CDS	CDS:EXON_MRNA	H2AC13	ENSG00000196747.4	ENST00000358739.4	protein_coding	protein_coding	protein_coding	protein_coding	10	205	2	2.76829	3.3863199999999996	4.00435	9.19467e-5	8.81321e-7	0.00184169	3.58909e-5
chr11	34091905	34091980	11905406	0	+	0.413333	(0.39,0.42]	chr11	909565	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	100	2	3.35975	3.386275	3.4128	1.8582e-5	3.15222e-7	5.04916e-4	1.4924e-5
chr19	43892949	43893044	17581343	0	-	0.273684	[0,0.29]	chr19	1479216	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF404:RP11-15A1.3	ENSG00000176222.9:ENSG00000267058.1	ENST00000588094.1:ENST00000587128.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	2	19	2	3.13753	3.386205	3.63488	0.00396668	7.12896e-4	0.0317467	0.00897774
chr2	173955357	173955454	3020157	0	-	0.43299	(0.42,0.455]	chr2	267378	6	CDS	CDS:EXON_MRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	74	2	3.20349	3.386	3.56851	3.9883e-5	6.20987e-6	9.51945e-4	1.85694e-4
chr1	54886953	54887019	1030938	0	-	0.575758	(0.53,0.59]	chr1	107070	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648728.1:ENST00000436604.2:ENST00000648494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.47	3.385975	4.30195	0.0089333	0.00421989	0.0567495	0.0328662
chr3	57583948	57584000	4210792	0	-	0.346154	(0.33,0.36]	chr3	355331	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	2.57153	3.385955	4.20038	0.00330025	3.77014e-7	0.028478	1.73504e-5
chr16	29665921	29666020	15626169	0	+	0.585859	(0.53,0.59]	chr16	1239197	11	UTR3	UTR3:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	1.90953	3.3859250000000003	4.86232	0.0517711	4.57805e-4	0.193577	0.00608573
chr3	48467985	48468079	4167338	0	-	0.638298	(0.59,1]	chr3	348993	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.32384	3.385275	4.44671	0.0157639	0.00931497	0.0851539	0.0586162
chr12	46188279	46188378	13313431	0	-	0.525253	(0.49,0.53]	chr12	1043464	54	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.8681	3.38502	3.90194	0.00175299	9.11374e-5	0.0171299	0.00182992
chr15	75371478	75371578	15376874	0	-	0.4	(0.39,0.42]	chr15	1215753	22	UTR3	UTR3:EXON_MRNA	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.34349	3.384665	4.42584	0.0169272	0.00199429	0.0890655	0.0189001
chr15	59638933	59639030	15315454	0	-	0.360825	(0.36,0.39]	chr15	1208757	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTF2A2	ENSG00000140307.11	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	3.02397	3.3846049999999996	3.74524	0.00674398	1.17259e-5	0.0461258	3.12994e-4
chr12	46188575	46188673	13313434	0	-	0.295918	(0.29,0.33]	chr12	1043464	57	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	3.23505	3.3846	3.53415	1.0759e-4	5.03888e-5	0.00207122	0.00103483
chr1	183545965	183546058	597944	0	+	0.494624	(0.49,0.53]	chr1	62104	1	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.13501	3.384195	4.63338	0.0287874	9.56909e-4	0.128869	0.010724
chr4	173248255	173248347	5232988	0	+	0.51087	(0.49,0.53]	chr4	421173	4	CDS	CDS:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000512285.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.13501	3.384195	4.63338	0.0287874	9.56909e-4	0.128869	0.010724
chr2	240025301	240025397	3246038	0	-	0.75	(0.59,1]	chr2	286100	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1:ENST00000407129.3:ENST00000497536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	28	2	2.9228	3.384185	3.84557	0.0410704	0.00981698	0.163285	0.0612992
chr1	27907231	27907282	910935	0	-	0.529412	(0.49,0.53]	chr1	95257	2	CDS	CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chr12	4654824	4654922	12706729	0	+	0.510204	(0.49,0.53]	chr12	985840	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-500M8.7:NDUFA9:RP11-234B24.6	ENSG00000272921.1:ENSG00000139180.11:ENSG00000255639.3	ENST00000536588.1:ENST00000539573.5:ENST00000648836.1:ENST00000266544.10:ENST00000542369.5:ENST00000396655.6:ENST00000544679.1:ENST00000535050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chr12	112302067	112302166	13545072	0	-	0.525253	(0.49,0.53]	chr12	1066084	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	HECTD4:RPL7AP60	ENSG00000173064.14:ENSG00000213152.5	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550724.2:ENST00000469026.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chr18	49286433	49286524	17117693	0	-	0.505495	(0.49,0.53]	chr18	1405423	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chr2	127989714	127989790	2870044	0	-	0.526316	(0.49,0.53]	chr2	256616	3	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chr22	20890021	20890121	18299841	0	+	0.53	(0.49,0.53]	chr22	1553630	23	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chrX	153182945	153183036	18913770	0	+	0.516484	(0.49,0.53]	chrX	1610792	6	CDS	CDS:EXON_MRNA	MAGEA1	ENSG00000198681.7	ENST00000356661.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.48488	3.3841	4.28332	0.032052	0.00338762	0.133433	0.0288632
chr5	175522374	175522422	6397745	0	+	0.479167	(0.455,0.49]	chr5	496814	1	CDS	CDS:UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000507823.5:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.95526	3.384005	3.81275	0.0138827	2.88167e-4	0.0760883	0.00423739
chr19	14402773	14402862	17242463	0	+	0.595506	(0.59,1]	chr19	1421834	3	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.76802	3.3839949999999996	3.99997	0.0158525	1.30803e-4	0.0854671	0.00243846
chr1	32197587	32197686	127266	0	+	0.494949	(0.49,0.53]	chr1	15695	25	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64528	3.3839550000000003	4.12263	0.0202736	0.00591451	0.0984041	0.0427941
chr12	93411219	93411299	13472828	0	-	0.5125	(0.49,0.53]	chr12	1059392	2	CDS	CDS:UTR5:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.64528	3.3839550000000003	4.12263	0.0202736	0.00591451	0.0984041	0.0427941
chr12	122093762	122093862	13122640	0	+	0.52	(0.49,0.53]	chr12	1024773	141	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64528	3.3839550000000003	4.12263	0.0202736	0.00591451	0.0984041	0.0427941
chr2	61482379	61482412	2690382	0	-	0.515152	(0.49,0.53]	chr2	240325	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.64528	3.3839550000000003	4.12263	0.0202736	0.00591451	0.0984041	0.0427941
chr10	91278908	91279006	11187746	0	+	0.418367	(0.39,0.42]	chr10	850434	7	UTR3	UTR3:EXON_MRNA	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.0503	3.383845	3.71739	0.00570576	1.41698e-5	0.0424438	3.66245e-4
chr3	13339853	13339943	4046438	0	-	0.622222	(0.59,1]	chr3	339596	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000485755.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.47837	3.3834	4.28843	0.00970721	2.52144e-5	0.0608296	5.85193e-4
chrX	38806064	38806159	18666848	0	+	0.378947	(0.36,0.39]	chrX	1591779	7	UTR3	UTR3:EXON_MRNA	MID1IP1	ENSG00000165175.16	ENST00000614558.2:ENST00000457894.5:ENST00000378474.3:ENST00000336949.7	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.73394	3.3833900000000003	4.03284	0.00131831	4.15492e-5	0.0143836	8.8376e-4
chr4	10103197	10103296	5311893	0	-	0.454545	(0.42,0.455]	chr4	427713	37	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.81137	3.383375	3.95538	0.0120386	6.68846e-5	0.0700876	0.00142352
chr1	30872520	30872618	915894	0	-	0.561224	(0.53,0.59]	chr1	95914	32	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	2.49112	3.38319	4.27526	0.00129901	1.03921e-5	0.0142093	2.85526e-4
chr1	167401503	167401556	522779	0	+	0.54717	(0.53,0.59]	chr1	56135	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.45844	3.3830999999999998	4.30776	0.00930921	0.00407289	0.0587563	0.0324137
chr14	102039478	102039546	14495783	0	+	0.544118	(0.53,0.59]	chr14	1133224	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.45844	3.3830999999999998	4.30776	0.00930921	0.00407289	0.0587563	0.0324137
chr8	23566544	23566633	9230659	0	+	0.337079	(0.33,0.36]	chr8	706548	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	86	2	3.33953	3.38305	3.42657	2.3079e-5	3.55061e-7	6.0378e-4	1.64926e-5
chr1	21876581	21876652	891236	0	-	0.549296	(0.53,0.59]	chr1	92527	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.90978	3.383045	3.85631	0.00857883	6.71157e-7	0.0552386	2.84686e-5
chr20	50893153	50893250	18006314	0	-	0.402062	(0.39,0.42]	chr20	1526243	18	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.27012	3.382485	4.49485	0.00945558	1.93637e-6	0.0594007	6.9799e-5
chr12	111448888	111448985	13092086	0	+	0.350515	(0.33,0.36]	chr12	1021116	7	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7:ENST00000538307.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	3.03552	3.3822099999999997	3.7289	0.0012034	1.33223e-5	0.0134762	3.48915e-4
chr7	92609880	92609979	8924938	0	-	0.282828	[0,0.29]	chr7	681136	51	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.03267	3.382175	4.73168	0.0131453	3.88478e-4	0.0733537	0.00534839
chr1	241504177	241504245	1577436	0	-	0.5	(0.49,0.53]	chr1	157519	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	60	2	2.95385	3.38192	3.80999	2.87717e-4	7.46851e-6	0.00423277	2.37258e-4
chr1	52381701	52381761	1018776	0	-	0.516667	(0.49,0.53]	chr1	105580	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.8671	3.3819	3.8967	0.0128791	0.0100489	0.0725185	0.0623334
chr1	212068275	212068327	701358	0	+	0.5	(0.49,0.53]	chr1	71142	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.8671	3.3819	3.8967	0.0128791	0.0100489	0.0725185	0.0623334
chr8	98042644	98042650	9962826	0	-	0.5	(0.49,0.53]	chr8	751700	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000521534.1:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.8671	3.3819	3.8967	0.0128791	0.0100489	0.0725185	0.0623334
chr11	18399430	18399489	11831470	0	+	0.423729	(0.42,0.455]	chr11	906002	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000535451.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	163	2	3.02817	3.381875	3.73558	6.9591e-7	2.18299e-8	2.93402e-5	1.65386e-6
chr5	175511450	175511550	6397628	0	+	0.43	(0.42,0.455]	chr5	496786	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000502393.5:ENST00000507823.5:ENST00000506963.1:ENST00000502865.5:ENST00000515736.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.05889	3.3817	3.70451	0.00524205	2.72131e-4	0.0399155	0.00404713
chr19	38409842	38409940	17559568	0	-	0.510204	(0.49,0.53]	chr19	1474624	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RASGRP4	ENSG00000171777.16	ENST00000615340.4:ENST00000586305.5:ENST00000588708.5:ENST00000589474.5:ENST00000614135.4:ENST00000622174.4:ENST00000587753.5:ENST00000454404.6:ENST00000617966.4:ENST00000589358.5:ENST00000592322.5:ENST00000588404.5:ENST00000618320.4:ENST00000615439.5:ENST00000293062.13:ENST00000433821.6:ENST00000426920.6:ENST00000587287.1:ENST00000587738.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.38097	3.3814450000000003	4.38192	0.0425419	0.00259709	0.167547	0.0229695
chr8	86554917	86554984	9457670	0	+	0.492537	(0.49,0.53]	chr8	720283	2	CDS	CDS:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000517354.5:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.38097	3.3814450000000003	4.38192	0.0425419	0.00259709	0.167547	0.0229695
chr6	31644524	31644576	7661436	0	-	0.711538	(0.59,1]	chr6	584844	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000438149.5:ENST00000469182.1:ENST00000453833.5:ENST00000435080.5:ENST00000462682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.82129	3.381295	4.9413	0.0227814	0.00191468	0.105293	0.0190905
chr2	131052153	131052253	2875722	0	-	0.3	(0.29,0.33]	chr2	257460	44	UTR3	UTR3:EXON_MRNA	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.81246	3.381255	4.95005	0.0178891	9.78718e-5	0.0937046	0.0019344
chr11	62559678	62559778	12409006	0	-	0.56	(0.53,0.59]	chr11	960939	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	291	2	3.11094	3.381175	3.65141	4.20458e-7	2.06805e-9	2.13628e-5	1.99366e-7
chr5	168516863	168516950	6369349	0	+	0.390805	(0.39,0.42]	chr5	494747	2	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	3.09736	3.381015	3.66467	5.79886e-4	3.60066e-4	0.00734771	0.00544157
chr4	48420124	48420198	4826798	0	+	0.513514	(0.49,0.53]	chr4	397740	1	CDS	CDS:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.87268	3.380775	3.88887	0.00175078	9.98984e-5	0.0180053	0.00180257
chr17	78120742	78120832	16693125	0	-	0.666667	(0.59,1]	chr17	1375226	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000591756.1:ENST00000589553.5:ENST00000588087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	134	2	2.77109	3.380725	3.99036	0.00331425	9.67768e-7	0.0285314	3.88714e-5
chrX	47142316	47142416	19059793	0	-	0.54	(0.53,0.59]	chrX	1619800	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFB11	ENSG00000147123.11	ENST00000377811.4:ENST00000276062.8	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	2.63175	3.3806849999999997	4.12962	1.56735e-4	7.35971e-8	0.00283272	4.2952e-6
chr1	46678362	46678460	983420	0	-	0.377551	(0.36,0.39]	chr1	103800	39	UTR3	UTR3:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000481623.2:ENST00000674495.1:ENST00000674263.1:ENST00000487741.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.336	3.380515	4.42503	0.0154226	0.00133228	0.0834369	0.0144372
chr4	87893817	87893916	4942254	0	+	0.515152	(0.49,0.53]	chr4	406011	21	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	47	2	2.13501	3.380375	4.62574	0.0287874	7.86745e-7	0.128869	3.25904e-5
chr3	10088148	10088248	3302091	0	+	0.46	(0.455,0.49]	chr3	290592	3	SS3_PROX	SS3_PROX:INTRON	FANCD2	ENSG00000144554.13	ENST00000287647.7:ENST00000676013.1:ENST00000675286.1:ENST00000419585.5:ENST00000681997.1:ENST00000683263.1:ENST00000421731.5:ENST00000683933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	3.3605	3.3802950000000003	3.40009	0.00147278	0.00120619	0.0157578	0.0129255
chr3	152432716	152432784	3818194	0	+	0.5	(0.49,0.53]	chr3	325660	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	3.33099	3.3802649999999996	3.42954	0.00105489	1.59567e-4	0.0123035	0.00263091
chr9	35697696	35697790	10639432	0	-	0.595745	(0.59,1]	chr9	804959	9	UTR3	UTR3:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	3.27003	3.380115	3.4902	0.00130379	3.45884e-4	0.0142445	0.00486309
chr2	15620207	15620301	1650895	0	+	0.393617	(0.39,0.42]	chr2	162956	1	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	3.19908	3.380025	3.56097	6.12149e-4	1.82682e-5	0.00818575	4.52458e-4
chr1	95194341	95194440	362130	0	+	0.363636	(0.36,0.39]	chr1	35683	26	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	3.18642	3.38002	3.57362	0.00359152	1.06281e-6	0.0302391	4.21166e-5
chr11	59636813	59636911	12401023	0	-	0.387755	(0.36,0.39]	chr11	959467	2	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.29474	3.379855	3.46497	0.00194306	0.00105709	0.0185233	0.0123035
chr5	91354568	91354659	6094894	0	+	0.516484	(0.49,0.53]	chr5	477541	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2061E19.1	ENSG00000240388.2	ENST00000495909.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	64	2	2.38683	3.379765	4.3727	0.012654	1.01998e-7	0.0718207	5.67095e-6
chr20	34508291	34508390	17765248	0	+	0.383838	(0.36,0.39]	chr20	1500386	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	3.06114	3.3797449999999998	3.69835	3.2708e-4	1.59276e-4	0.00502339	0.00263091
chr11	13728674	13728774	11813121	0	+	0.39	(0.36,0.39]	chr11	904642	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000532502.1	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.36801	3.37953	5.39105	0.0471244	7.73826e-6	0.172305	2.43421e-4
chr9	130783653	130783753	10493259	0	+	0.53	(0.49,0.53]	chr9	792876	688	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.01464	3.37951	4.74438	0.0205094	5.91752e-4	0.0991175	0.00743488
chrX	101412279	101412375	18786561	0	+	0.510417	(0.49,0.53]	chrX	1601436	3	CDS	CDS:UTR3:EXON_MRNA	RPL36A-HNRNPH2:HNRNPH2	ENSG00000257529.5:ENSG00000126945.9	ENST00000409338.5:ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.01464	3.37951	4.74438	0.0205094	5.91752e-4	0.0991175	0.00743488
chr4	112788380	112788480	5601615	0	-	0.55	(0.53,0.59]	chr4	446907	4	EXON_PSEUDO	EXON_PSEUDO	RPL7AP30	ENSG00000241741.1	ENST00000482859.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	34	2	3.20874	3.379375	3.55001	0.00278422	6.11776e-4	0.0241009	0.00818575
chr7	40134307	40134387	8787149	0	-	0.7375	(0.59,1]	chr7	669956	2	CDS	CDS:EXON_MRNA	MPLKIP	ENSG00000168303.9	ENST00000306984.8	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.04362	3.37936	4.7151	0.036186	0.00412279	0.145024	0.0325842
chr1	20981121	20981195	885342	0	-	0.554054	(0.53,0.59]	chr1	91604	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF4G3	ENSG00000075151.23	ENST00000374935.7:ENST00000264211.12:ENST00000602326.5:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5:ENST00000476088.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	3.21941	3.379355	3.5393	0.00266171	6.46017e-4	0.0240332	0.00799743
chr10	28620190	28620287	10990637	0	+	0.340206	(0.33,0.36]	chr10	835918	7	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	72	2	3.04091	3.37929	3.71767	9.09543e-6	2.53718e-6	2.53877e-4	9.65472e-5
chr1	21859565	21859620	891034	0	-	0.581818	(0.53,0.59]	chr1	92424	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.28422	3.379205	3.47419	8.75273e-4	2.10061e-4	0.0106963	0.00327655
chr17	82085319	82085402	16710752	0	-	0.638554	(0.59,1]	chr17	1378189	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000579410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.97653	3.379205	3.78188	0.00142722	3.33896e-4	0.0153442	0.00472923
chr5	139683199	139683297	6250956	0	+	0.387755	(0.36,0.39]	chr5	487158	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1:ENST00000505812.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.48922	3.3791900000000004	4.26916	0.0110399	9.09682e-6	0.0652374	2.53877e-4
chr1	65592656	65592725	253226	0	+	0.449275	(0.42,0.455]	chr1	28815	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	71	2	2.90284	3.37914	3.85544	4.27478e-4	5.8615e-7	0.00618684	2.5331e-5
chr1	168236711	168236766	526432	0	+	0.418182	(0.39,0.42]	chr1	56524	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SFT2D2	ENSG00000213064.10	ENST00000471981.1:ENST00000367829.5:ENST00000271375.7:ENST00000630869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	1.98676	3.3789100000000003	4.77106	0.0439902	3.03764e-4	0.163596	0.00472028
chr5	37290710	37290809	6539930	0	-	0.393939	(0.39,0.42]	chr5	506493	27	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	1.98676	3.3789100000000003	4.77106	0.0439902	3.03764e-4	0.163596	0.00472028
chr21	6444966	6445064	18154843	0	-	0.5	(0.49,0.53]	chr21	1541348	2	UTR3	UTR3:EXON_MRNA	CBSL	ENSG00000274276.4	ENST00000618024.4:ENST00000398168.5:ENST00000624406.3:ENST00000624691.3:ENST00000617706.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.78962	3.378595	3.96757	0.0129044	6.21316e-5	0.0725185	0.00134149
chr1	214640600	214640698	710426	0	+	0.428571	(0.42,0.455]	chr1	71905	8	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.36247	3.378575	4.39468	0.0462889	0.00240483	0.176878	0.0217482
chr1	231365030	231365129	1548250	0	-	0.434343	(0.42,0.455]	chr1	155129	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.36247	3.378575	4.39468	0.0462889	0.00240483	0.176878	0.0217482
chr10	99712237	99712335	11658542	0	-	0.438776	(0.42,0.455]	chr10	888143	15	UTR3	UTR3:EXON_MRNA:INTRON	RP11-483F11.9:COX15	ENSG00000285932.1:ENSG00000014919.13	ENST00000649102.1:ENST00000016171.6:ENST00000370483.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.36247	3.378575	4.39468	0.0462889	0.00240483	0.176878	0.0217482
chr5	613141	613240	5850553	0	+	0.454545	(0.42,0.455]	chr5	459883	3	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.36247	3.378575	4.39468	0.0462889	0.00240483	0.176878	0.0217482
chr5	176509000	176509097	6402698	0	+	0.42268	(0.42,0.455]	chr5	497383	22	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.36247	3.378575	4.39468	0.0462889	0.00240483	0.176878	0.0217482
chrX	119619362	119619458	19192015	0	-	0.4375	(0.42,0.455]	chrX	1631523	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5:ENST00000467310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.36247	3.378575	4.39468	0.0462889	0.00240483	0.176878	0.0217482
chr8	30353324	30353421	9253466	0	+	0.556701	(0.53,0.59]	chr8	708964	16	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TUBBP1	ENSG00000127589.4	ENST00000518096.1:ENST00000248151.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	9	115	2	3.29094	3.37853	3.46612	1.16467e-5	1.47474e-6	3.43116e-4	5.55746e-5
chr20	49089246	49089321	17811794	0	+	0.333333	(0.33,0.36]	chr20	1506564	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	2.79427	3.37834	3.96241	1.77242e-4	2.45889e-6	0.0030964400000000002	8.56405e-5
chr1	10403070	10403136	39736	0	+	0.424242	(0.42,0.455]	chr1	4786	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000477958.5:ENST00000483936.5:ENST00000465632.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	3.19078	3.37796	3.56514	0.00310864	3.86623e-5	0.0274272	8.37229e-4
chr7	128092414	128092503	8519383	0	+	0.505618	(0.49,0.53]	chr7	649827	5	UTR3	UTR3:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	93	2	3.35841	3.37796	3.39751	1.37225e-4	5.38922e-7	0.00253405	2.36503e-5
chr6	52284596	52284674	7736807	0	-	0.615385	(0.59,1]	chr6	593765	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.61074	3.377785	4.14483	0.025486	0.0183207	0.117089	0.0945306
chr1	11750146	11750216	44150	0	+	0.671429	(0.59,1]	chr1	5415	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AGTRAP	ENSG00000177674.16	ENST00000376637.7:ENST00000476512.5:ENST00000400895.6:ENST00000314340.10:ENST00000491346.5:ENST00000376629.8:ENST00000376627.6:ENST00000452018.6:ENST00000510878.1:ENST00000476309.5:ENST00000514733.5:ENST00000471765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	27	2	2.76802	3.377765	3.98751	0.0301044	0.0158525	0.129773	0.0854671
chr5	138947216	138947301	6862741	0	-	0.694118	(0.59,1]	chr5	525289	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000515008.1:ENST00000509534.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.76802	3.377765	3.98751	0.0301044	0.0158525	0.129773	0.0854671
chr6	32848005	32848092	7667325	0	-	0.666667	(0.59,1]	chr6	586857	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TAP1	ENSG00000168394.12	ENST00000354258.5:ENST00000486332.1:ENST00000643049.2:ENST00000645078.1:ENST00000643923.1:ENST00000487296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	27	2	2.76802	3.377765	3.98751	0.0301044	0.0158525	0.129773	0.0854671
chr7	150372080	150372176	8614879	0	+	0.645833	(0.59,1]	chr7	657737	7	CDS	CDS:UTR3:EXON_MRNA:INTRON	REPIN1:ZNF775	ENSG00000214022.12:ENSG00000196456.13	ENST00000479668.5:ENST00000478789.5:ENST00000397281.6:ENST00000444957.3:ENST00000466559.1:ENST00000475514.5:ENST00000489432.7:ENST00000488943.1:ENST00000425389.2	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.76802	3.377765	3.98751	0.0301044	0.0158525	0.129773	0.0854671
chr8	101199029	101199128	9976852	0	-	0.373737	(0.36,0.39]	chr8	752810	21	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5:ENST00000311212.9:ENST00000519744.5:ENST00000520498.1:ENST00000517844.5:ENST00000519103.1:ENST00000520347.5:ENST00000519882.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	1.94692	3.3777	4.80848	0.0192083	1.65455e-7	0.0943643	8.63103e-6
chr6	127289675	127289771	7945055	0	-	0.333333	(0.33,0.36]	chr6	607606	11	UTR3	UTR3:EXON_MRNA	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.4164	3.37768	4.33896	0.011989	0.00182033	0.0700473	0.0183913
chr2	36846266	36846366	2594576	0	-	0.31	(0.29,0.33]	chr2	233508	87	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	3.13212	3.3776200000000003	3.62312	0.0222826	0.00551048	0.104593	0.0414592
chr7	151081465	151081548	9129252	0	-	0.807229	(0.59,1]	chr7	697675	3	CDS	CDS:UTR3:EXON_MRNA	TMUB1	ENSG00000164897.14	ENST00000297533.9:ENST00000392818.7:ENST00000462940.1:ENST00000653405.1:ENST00000482202.5:ENST00000476627.5	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.74555	3.3775	5.00945	0.0444308	0.00149725	0.165174	0.0159607
chr22	20582678	20582747	18299153	0	+	0.73913	(0.59,1]	chr22	1553494	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	1.9603	3.3774	4.7945	0.0141758	0.0031766	0.0776158	0.0279054
chr1	53228871	53228954	1021899	0	-	0.337349	(0.33,0.36]	chr1	106078	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAGOH	ENSG00000162385.11	ENST00000371470.8:ENST00000371466.4:ENST00000495868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.78095	3.377375	3.9738	0.00388614	5.94302e-5	0.0322851	0.00119141
chr11	46811092	46811178	12384206	0	-	0.395349	(0.39,0.42]	chr11	956202	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.32811	3.3771050000000002	3.4261	0.00182819	0.00107164	0.0183913	0.0118238
chr11	85635682	85635782	12045170	0	+	0.4	(0.39,0.42]	chr11	928797	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM126B	ENSG00000171204.13	ENST00000393375.5:ENST00000358867.11:ENST00000531477.5:ENST00000531718.5:ENST00000530783.5:ENST00000534341.1:ENST00000526822.5:ENST00000529197.1:ENST00000531274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.32811	3.3771050000000002	3.4261	0.00182819	0.00107164	0.0183913	0.0118238
chr16	30085219	30085297	15628549	0	+	0.397436	(0.39,0.42]	chr16	1239839	3	UTR3	UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000279387.12:ENST00000563200.5:ENST00000566749.5:ENST00000627746.2:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	3.32811	3.3771050000000002	3.4261	0.00182819	0.00107164	0.0183913	0.0118238
chr9	7477436	7477534	10545924	0	-	0.428571	(0.42,0.455]	chr9	799719	5	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	17	186	2	3.04893	3.3771	3.70527	4.21884e-6	1.92236e-9	1.47902e-4	1.87183e-7
chrX	74031615	74031714	18741247	0	+	0.525253	(0.49,0.53]	chrX	1599352	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	JPX:RPSAP14	ENSG00000225470.8:ENSG00000233984.1	ENST00000640437.1:ENST00000602772.5:ENST00000429143.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	31	2	2.92082	3.377005	3.83319	0.00827037	1.34601e-4	0.0534766	0.00249552
chr1	247156665	247156757	1603274	0	-	0.434783	(0.42,0.455]	chr1	159212	1	CDS	CDS:EXON_MRNA:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.20599	3.376955	4.54792	0.0227797	9.66045e-4	0.105293	0.0115185
chr3	53225855	53225931	4188985	0	-	0.605263	(0.59,1]	chr3	353772	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.67996	3.376925	4.07389	0.00470478	7.9402e-5	0.0363963	0.00150391
chr4	82818884	82818978	5496419	0	-	0.37234	(0.36,0.39]	chr4	440157	5	UTR3	UTR3:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5	protein_coding	protein_coding	protein_coding	protein_coding	14	118	2	3.27433	3.376875	3.47942	3.60408e-7	2.43765e-7	1.88058e-5	1.19968e-5
chr12	6601706	6601766	13187434	0	-	0.533333	(0.53,0.59]	chr12	1032410	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000545942.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.92962	3.376845	3.82407	0.0179666	0.0012954	0.0918323	0.0136936
chr1	631073	631169	479	0	+	0.46875	(0.455,0.49]	chr1	106	1	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	64	612	2	3.32602	3.3767250000000004	3.42743	1.00836e-9	8.90693e-11	1.05709e-7	1.35402e-8
chr1	154157443	154157540	1302313	0	-	0.546392	(0.53,0.59]	chr1	131065	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000513769.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	185	2	3.21201	3.3766749999999996	3.54134	4.28733e-7	1.87172e-7	1.9413e-5	1.07552e-5
chr8	81521956	81522048	9915116	0	-	0.48913	(0.455,0.49]	chr8	748801	4	EXON_PSEUDO	EXON_PSEUDO	FTH1P11	ENSG00000237264.4	ENST00000517577.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	85	2	3.28934	3.376615	3.46389	9.14164e-4	5.88844e-7	0.0110519	2.5438e-5
chr7	107758985	107759078	8457137	0	+	0.505376	(0.49,0.53]	chr7	646250	10	CDS	CDS:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.99849	3.376545	3.7546	0.00630123	2.09468e-4	0.0445415	0.00327655
chrX	39787679	39787770	19044755	0	-	0.516484	(0.49,0.53]	chrX	1618678	7	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	2.99849	3.376545	3.7546	0.00630123	2.09468e-4	0.0445415	0.00327655
chr8	63209904	63210004	9370712	0	+	0.4	(0.39,0.42]	chr8	715902	3	UTR3	UTR3:EXON_MRNA	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.11399	3.37641	4.63883	0.014455	5.68159e-4	0.0787564	0.0077844
chr10	28551745	28551845	10989934	0	+	0.33	(0.29,0.33]	chr10	835854	133	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	3.05815	3.37639	3.69463	1.75443e-4	3.13406e-5	0.00284534	7.70685e-4
chr22	39966073	39966158	18372727	0	+	0.447059	(0.42,0.455]	chr22	1563513	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000478445.1:ENST00000407075.3:ENST00000481263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	1.95205	3.3763449999999997	4.80064	0.0248244	3.0479e-4	0.113644	0.00472028
chr5	115615908	115616008	6777005	0	-	0.33	(0.29,0.33]	chr5	519913	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	53	2	2.75806	3.376295	3.99453	8.03892e-5	3.96329e-5	0.00167226	8.539e-4
chr1	244853657	244853756	1591270	0	-	0.292929	(0.29,0.33]	chr1	158388	35	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	2.39609	3.3761200000000002	4.35615	0.0040115	1.00858e-7	0.0324137	5.6272e-6
chr3	98579920	98580015	4319536	0	-	0.326316	(0.29,0.33]	chr3	360252	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	148	2	3.12616	3.3761200000000002	3.62608	1.09982e-7	5.88909e-8	6.83902e-6	3.54485e-6
chr3	150458536	150458636	3807488	0	+	0.55	(0.53,0.59]	chr3	324962	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1:ENST00000460316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	3.2780300000000002	3.37611	3.47419	8.75273e-4	4.08373e-5	0.0106963	8.76332e-4
chr5	314606	314698	5848845	0	+	0.402174	(0.39,0.42]	chr5	459659	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2546F11.1:PDCD6:PDCD6-AHRR	ENSG00000286001.1:ENSG00000249915.8:ENSG00000288622.1	ENST00000651543.1:ENST00000614778.4:ENST00000618970.4:ENST00000628729.2:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505113.6:ENST00000675395.1:ENST00000507473.1:ENST00000512529.6:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	3.23057	3.37598	3.52139	3.34829e-4	5.10101e-5	0.00509483	0.00104581
chr1	1223899	1223968	826437	0	-	0.565217	(0.53,0.59]	chr1	81975	2	CDS	CDS:EXON_MRNA	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	52	2	2.90978	3.37596	3.84214	0.00857883	6.5494e-6	0.0552386	1.94116e-4
chr12	14460767	14460859	12745114	0	+	0.456522	(0.455,0.49]	chr12	990777	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATF7IP	ENSG00000171681.13	ENST00000537653.5:ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000541654.1:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.69053	3.37568	4.06083	0.0182983	3.56832e-5	0.0925808	7.81595e-4
chr17	44319718	44319812	16557787	0	-	0.542553	(0.53,0.59]	chr17	1359328	2	UTR3	UTR3:EXON_MRNA	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000592372.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	205	2	3.24581	3.37563	3.50545	6.56202e-7	9.18374e-8	3.09621e-5	5.1919e-6
chr19	58548987	58549071	17413345	0	+	0.654762	(0.59,1]	chr19	1451210	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000601150.5:ENST00000597995.1:ENST00000597136.1:ENST00000595028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.72625	3.3754299999999997	4.02461	0.00394493	5.32274e-6	0.0322851	1.62953e-4
chr5	146113908	146114006	6891040	0	-	0.295918	(0.29,0.33]	chr5	527438	35	UTR3	UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	3.09624	3.3753849999999996	3.65453	2.81203e-5	2.84967e-6	7.10141e-4	9.64791e-5
chrX	153694718	153694803	18915636	0	+	0.552941	(0.53,0.59]	chrX	1611198	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	160	2	2.91819	3.375055	3.83192	2.34782e-5	1.49065e-8	6.12612e-4	1.09371e-6
chr2	46909071	46909171	2629883	0	-	0.63	(0.59,1]	chr2	236809	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1:ENST00000409207.5:ENST00000470873.1:ENST00000409973.5:ENST00000409147.1:ENST00000409218.5:ENST00000412438.5:ENST00000434262.1:ENST00000477791.5:ENST00000479225.1:ENST00000417180.1:ENST00000487121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.11894	3.375	4.63106	0.0293157	0.00537945	0.128478	0.0406564
chr3	33129938	33130002	3397688	0	+	0.390625	(0.39,0.42]	chr3	295489	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1:ENST00000485310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	2.70591	3.374955	4.044	0.0185716	1.34261e-6	0.0932453	5.13723e-5
chr1	155248404	155248473	1307186	0	-	0.463768	(0.455,0.49]	chr1	132050	1	CDS	CDS:EXON_MRNA:INTRON	FAM189B	ENSG00000160767.21	ENST00000361361.7:ENST00000350210.6:ENST00000368368.7:ENST00000368366.5:ENST00000621094.4:ENST00000487649.5:ENST00000491082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	3.09445	3.37495	3.65545	6.1765e-4	3.50134e-4	0.00822794	0.0049086
chr22	21628598	21628679	18441863	0	-	0.716049	(0.59,1]	chr22	1572449	2	CDS	CDS:UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.61229	3.37454	5.13679	0.0434296	9.28022e-4	0.162491	0.0111748
chr7	100096080	100096167	8949654	0	-	0.609195	(0.59,1]	chr7	683525	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	3.16732	3.374325	3.58133	8.92036e-4	5.6576e-4	0.010856	0.00718071
chr9	4841305	4841357	10165959	0	+	0.365385	(0.36,0.39]	chr9	765552	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6:ENST00000441844.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.76778	3.374015	3.98025	0.00881716	0.00365703	0.0562439	0.0307238
chr5	72208090	72208188	6027878	0	+	0.44898	(0.42,0.455]	chr5	472574	30	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.76161	3.37395	3.98629	9.19052e-4	2.11853e-6	0.0111046	7.50523e-5
chr11	9445096	9445194	11792887	0	+	0.428571	(0.42,0.455]	chr11	902940	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.50649	3.3739099999999995	4.24133	0.0302857	0.00326918	0.130016	0.0282494
chr7	100032418	100032514	8425078	0	+	0.4375	(0.42,0.455]	chr7	642416	17	INTRON	INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.50649	3.3739099999999995	4.24133	0.0302857	0.00326918	0.130016	0.0282494
chrX	129590568	129590668	18856626	0	+	0.45	(0.42,0.455]	chrX	1606595	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	OCRL	ENSG00000122126.17	ENST00000371113.9:ENST00000357121.5:ENST00000646010.1:ENST00000647245.1:ENST00000646914.1:ENST00000463271.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.50649	3.3739099999999995	4.24133	0.0302857	0.00326918	0.130016	0.0282494
chr21	29062489	29062556	18202003	0	-	0.41791	(0.39,0.42]	chr21	1544726	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2:ENST00000480359.1:ENST00000475205.1:ENST00000431234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	119	2	3.22136	3.373895	3.52643	6.03429e-6	7.10421e-8	1.9852e-4	4.1684e-6
chr2	189924020	189924118	2274552	0	+	0.469388	(0.455,0.49]	chr2	206588	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	11	79	2	2.35859	3.3738799999999998	4.38917	1.6721e-4	3.90809e-6	0.00272473	1.38004e-4
chr1	121020697	121020797	1258911	0	-	0.42	(0.39,0.42]	chr1	123336	123	INTRON	INTRON	PDE4DIPP4	ENSG00000275585.2	ENST00000612313.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	32	283	2	3.16861	3.3737500000000002	3.57889	3.73076e-8	3.17433e-10	2.40191e-6	4.20172e-8
chr12	56671748	56671847	13352289	0	-	0.393939	(0.39,0.42]	chr12	1051804	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	121	2	3.20326	3.3737450000000004	3.54423	1.48042e-6	3.54608e-7	6.1171e-5	1.64911e-5
chr1	246207525	246207625	1596354	0	-	0.32	(0.29,0.33]	chr1	158565	139	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr13	24123133	24123230	13932403	0	-	0.329897	(0.29,0.33]	chr13	1093069	12	EXON_PSEUDO	EXON_PSEUDO	IPO7P2	ENSG00000225674.1	ENST00000451446.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr2	177318764	177318862	3033956	0	-	0.326531	(0.29,0.33]	chr2	268600	4	INTRON	INTRON	NFE2L2:AC074286.1	ENSG00000116044.16:ENSG00000213963.6	ENST00000464747.5:ENST00000397057.6:ENST00000456746.5:ENST00000430416.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr2	222942151	222942251	2406352	0	+	0.3	(0.29,0.33]	chr2	216635	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr20	13782592	13782682	17907715	0	-	0.311111	(0.29,0.33]	chr20	1515608	2	CDS	CDS:EXON_MRNA	ESF1	ENSG00000089048.15	ENST00000202816.5:ENST00000617257.2	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr3	50118832	50118926	3464549	0	+	0.319149	(0.29,0.33]	chr3	302741	5	UTR3	UTR3:EXON_MRNA	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000464087.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr5	142152697	142152794	6262755	0	+	0.298969	(0.29,0.33]	chr5	488725	11	UTR3	UTR3:EXON_MRNA	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000503388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr6	8944253	8944353	7042728	0	+	0.33	(0.29,0.33]	chr6	539408	40	INTRON	INTRON	HULC	ENSG00000285219.2	ENST00000643788.1:ENST00000646431.1:ENST00000644892.1:ENST00000644837.1:ENST00000646403.1:ENST00000642798.1:ENST00000642760.1:ENST00000646996.1:ENST00000645379.1:ENST00000643431.1:ENST00000647039.1:ENST00000645747.1:ENST00000646231.1:ENST00000643761.1:ENST00000645796.1	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr8	43018795	43018894	9307501	0	+	0.292929	(0.29,0.33]	chr8	712746	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HOOK3:RP11-598P20.5	ENSG00000168172.9:ENSG00000254673.1	ENST00000307602.9:ENST00000533338.1:ENST00000534420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.67277	3.373735	4.0747	0.0255386	0.00577533	0.117089	0.0417823
chr8	116646470	116646536	10033920	0	-	0.575758	(0.53,0.59]	chr8	755326	1	CDS	CDS:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8	protein_coding	protein_coding	protein_coding	protein_coding	21	252	2	3.23896	3.3737250000000003	3.50849	1.11077e-7	5.20008e-8	6.89479e-6	3.19404e-6
chr18	59331417	59331478	17142348	0	-	0.295082	(0.29,0.33]	chr18	1407607	1	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000592562.1:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	70	2	3.28157	3.37345	3.46533	2.24958e-5	1.34297e-6	5.90075e-4	5.1375e-5
chr18	23540447	23540537	17037353	0	-	0.411111	(0.39,0.42]	chr18	1400561	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.34349	3.3733400000000002	4.40319	0.0169272	3.72195e-6	0.0890655	1.21063e-4
chr17	59647397	59647486	16295084	0	+	0.348315	(0.33,0.36]	chr17	1321611	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	2.50997	3.37323	4.23649	9.74806e-4	2.79885e-7	0.0116117	1.34592e-5
chr11	61366090	61366190	11968839	0	+	0.49	(0.455,0.49]	chr11	916926	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM138	ENSG00000149483.12	ENST00000534963.5:ENST00000542946.1:ENST00000278826.11:ENST00000540194.5:ENST00000507563.6:ENST00000423772.6:ENST00000545420.1:ENST00000451389.6:ENST00000381787.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	2.35716	3.373165	4.38917	0.00260884	3.90809e-6	0.0230635	1.38004e-4
chr1	172441728	172441828	1369787	0	-	0.42	(0.39,0.42]	chr1	139582	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1:ENST00000367728.1:ENST00000344529.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.59744	3.37315	4.14886	0.00572981	0.00415881	0.0417368	0.0325842
chr15	43805375	43805465	15250132	0	-	0.411111	(0.39,0.42]	chr15	1202271	1	CDS	CDS:EXON_MRNA	MFAP1	ENSG00000140259.7	ENST00000267812.4:ENST00000484386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.59744	3.37315	4.14886	0.00572981	0.00415881	0.0417368	0.0325842
chr17	28553475	28553568	16485690	0	-	0.419355	(0.39,0.42]	chr17	1347682	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.59744	3.37315	4.14886	0.00572981	0.00415881	0.0417368	0.0325842
chr1	20743023	20743121	883099	0	-	0.285714	[0,0.29]	chr1	91337	29	UTR3	UTR3:EXON_MRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6	protein_coding	protein_coding	protein_coding	protein_coding	19	130	2	2.92551	3.373125	3.82074	3.5989e-6	1.40458e-9	1.29307e-4	1.41942e-7
chr5	179730342	179730442	6414477	0	+	0.36	(0.33,0.36]	chr5	499211	18	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	349	2	3.10218	3.3730450000000003	3.64391	2.26184e-8	3.72803e-11	1.70187e-6	5.65497e-9
chr13	46156503	46156570	14009921	0	-	0.41791	(0.39,0.42]	chr13	1098567	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.98448	3.372945	3.76141	2.45186e-4	2.14058e-4	0.00370692	0.00359478
chr4	187970344	187970416	5269556	0	+	0.555556	(0.53,0.59]	chr4	423775	2	EXON_PSEUDO	EXON_PSEUDO	RP11-713C19.2	ENSG00000213331.4	ENST00000508231.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	47	2	2.47	3.37263	4.27526	0.0089333	1.03921e-5	0.0567495	2.85526e-4
chr11	46743729	46743827	12383477	0	-	0.428571	(0.42,0.455]	chr11	955986	8	UTR3	UTR3:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.99666	3.372625	3.74859	0.00104775	1.15347e-5	0.0123035	3.09736e-4
chr1	21890060	21890141	891393	0	-	0.580247	(0.53,0.59]	chr1	92599	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000412328.5:ENST00000374673.4:ENST00000439717.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	40	2	2.515	3.37261	4.23022	0.0292633	1.38676e-5	0.129773	3.5918e-4
chr3	13317487	13317583	4046196	0	-	0.541667	(0.53,0.59]	chr3	339510	14	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.98881	3.37248	3.75615	2.35204e-4	2.16536e-4	0.00361336	0.00356397
chr9	22012127	22012225	10223398	0	+	0.571429	(0.53,0.59]	chr9	768322	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-145E5.5:CDKN2B-AS1:UBA52P6	ENSG00000264545.2:ENSG00000240498.9:ENSG00000215221.2	ENST00000404796.3:ENST00000468603.7:ENST00000651588.1:ENST00000652420.1:ENST00000428597.6:ENST00000580576.6:ENST00000585267.5:ENST00000584351.5:ENST00000583719.5:ENST00000580467.5:ENST00000455933.7:ENST00000645313.2:ENST00000582072.5:ENST00000584816.5:ENST00000584020.5:ENST00000577551.5:ENST00000584637.5:ENST00000581051.5:ENST00000582301.5:ENST00000421632.2:ENST00000651904.1:ENST00000651784.1:ENST00000650946.1:ENST00000399822.2	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA:transcribed_processed_pseudogene	nonsense_mediated_decay:lncRNA:transcribed_processed_pseudogene	2	38	2	2.65894	3.372465	4.08599	0.0193255	3.38473e-5	0.0943643	7.45971e-4
chr19	48921153	48921238	17367834	0	+	0.611765	(0.59,1]	chr19	1442150	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000465524.5:ENST00000469291.1:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	130	2	3.0111	3.37239	3.73368	1.19375e-4	3.43356e-5	0.00208353	8.37726e-4
chr4	2928911	2929008	4687493	0	+	0.463918	(0.455,0.49]	chr4	388871	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	3.3605	3.3723	3.3841	0.00147278	1.17485e-4	0.0157578	0.00206023
chr2	10787359	10787439	2510756	0	-	0.6125	(0.59,1]	chr2	226674	2	CDS	CDS:EXON_MRNA	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	23	520	2	3.1162	3.3722149999999997	3.62823	1.13719e-5	1.70008e-8	3.36394e-4	1.22826e-6
chr5	181243700	181243780	7009027	0	-	0.625	(0.59,1]	chr5	537354	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1:ENST00000503170.1:ENST00000514318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	37	660	2	2.82746	3.37213	3.9168	1.93138e-6	2.88659e-8	6.97505e-5	2.11036e-6
chr11	9287753	9287806	12265180	0	-	0.415094	(0.39,0.42]	chr11	948407	2	CDS	CDS:EXON_MRNA	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000533867.1:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.85416	3.37204	3.88992	0.00225069	4.22388e-6	0.021386	1.34652e-4
chr1	235122325	235122372	1560200	0	-	0.489362	(0.455,0.49]	chr1	156035	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.27492	3.37175	4.46858	0.0193827	2.38087e-6	0.0943643	8.3081e-5
chr19	34400036	34400130	17300567	0	+	0.617021	(0.59,1]	chr19	1429897	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	827	2	3.14106	3.371735	3.60241	6.27886e-7	1.16089e-8	2.98268e-5	8.81036e-7
chr5	127552806	127552905	6205037	0	+	0.313131	(0.29,0.33]	chr5	483456	10	UTR3	UTR3:EXON_MRNA:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.92065	3.371725	3.8228	0.0117842	1.45428e-4	0.0686664	0.00244094
chr20	49952075	49952141	17814636	0	+	0.454545	(0.42,0.455]	chr20	1506965	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.89192	3.37171	3.8515	0.0119089	0.00157686	0.0686664	0.015761
chr7	135929826	135929925	9085579	0	-	0.515152	(0.49,0.53]	chr7	693646	32	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	21	241	2	3.00352	3.37168	3.73984	1.95933e-6	5.42874e-10	7.75977e-5	6.11161e-8
chr5	132300005	132300105	6222542	0	+	0.32	(0.29,0.33]	chr5	484235	40	INTRON	INTRON	SLC22A4	ENSG00000197208.6	ENST00000200652.4:ENST00000491257.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.49936	3.3716150000000003	4.24387	0.00917022	0.00263476	0.0580029	0.0239118
chr9	78329909	78330001	10321099	0	+	0.304348	(0.29,0.33]	chr9	777290	10	UTR3	UTR3:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.49936	3.3716150000000003	4.24387	0.00917022	0.00263476	0.0580029	0.0239118
chr3	57942206	57942304	3500179	0	+	0.489796	(0.455,0.49]	chr3	306647	5	EXON_PSEUDO	EXON_PSEUDO	PPIAP16	ENSG00000213509.4	ENST00000462517.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	63	2	2.74805	3.3715200000000003	3.99499	3.3051e-4	1.91791e-6	0.00470169	7.6073e-5
chrX	134498607	134498684	18863960	0	+	0.337662	(0.33,0.36]	chrX	1607400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.63456	3.3714649999999997	4.10837	0.00707461	2.58508e-5	0.0478528	5.98505e-4
chr2	149587663	149587720	2933076	0	-	0.54386	(0.53,0.59]	chr2	260068	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000422782.2:ENST00000460311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	46	2	3.30943	3.371425	3.43342	0.0018255	8.93729e-5	0.0183913	0.00165837
chr15	80137479	80137528	15045402	0	+	0.469388	(0.455,0.49]	chr15	1183659	1	CDS	CDS:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000558087.5:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.23479	3.3714199999999996	4.50805	0.0209335	0.00122223	0.101282	0.0135383
chr2	171483181	171483279	2207034	0	+	0.459184	(0.455,0.49]	chr2	201956	22	UTR3	UTR3:EXON_MRNA	DCAF17	ENSG00000115827.14	ENST00000375255.8:ENST00000539783.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.23479	3.3714199999999996	4.50805	0.0209335	0.00122223	0.101282	0.0135383
chr6	35833744	35833841	7677917	0	-	0.474227	(0.455,0.49]	chr6	588535	9	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.23479	3.3714199999999996	4.50805	0.0209335	0.00122223	0.101282	0.0135383
chr6	13615541	13615624	7062243	0	+	0.710843	(0.59,1]	chr6	540553	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOL7	ENSG00000225921.7	ENST00000451315.7:ENST00000420088.1:ENST00000474485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	1.87297	3.3713699999999998	4.86977	0.0308113	0.00246014	0.130016	0.0230058
chr6	89080894	89080994	7271455	0	+	0.68	(0.59,1]	chr6	560624	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PNRC1	ENSG00000146278.11	ENST00000336032.4:ENST00000369472.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	1.87297	3.3713699999999998	4.86977	0.0308113	0.00246014	0.130016	0.0230058
chr20	62945406	62945505	17863436	0	+	0.484848	(0.455,0.49]	chr20	1510468	6	UTR3	UTR3:EXON_MRNA	GID8	ENSG00000101193.8	ENST00000266069.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	1.8708	3.37133	4.87186	0.0324007	2.33781e-4	0.134751	0.00385436
chr7	155301565	155301627	8632582	0	+	0.5	(0.49,0.53]	chr7	659269	1	CDS	CDS:EXON_MRNA:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1:ENST00000468307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	205	2	2.77818	3.371285	3.96439	1.894e-5	2.62924e-10	5.12974e-4	3.20061e-8
chr8	143021877	143021966	9647077	0	+	0.696629	(0.59,1]	chr8	730770	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LY6E	ENSG00000160932.11	ENST00000517503.1:ENST00000429120.6:ENST00000521699.5:ENST00000520466.5:ENST00000292494.11:ENST00000522528.5:ENST00000521003.5:ENST00000522971.5:ENST00000521182.5:ENST00000519546.5:ENST00000523847.5:ENST00000522024.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39747	3.3711700000000002	4.34487	0.0430221	0.0123678	0.161091	0.0705839
chr9	131487855	131487935	10498710	0	+	0.6	(0.59,1]	chr9	793612	1	CDS	CDS:EXON_MRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39747	3.3711700000000002	4.34487	0.0430221	0.0123678	0.161091	0.0705839
chrX	153785871	153785971	19274182	0	-	0.66	(0.59,1]	chrX	1637427	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IDH3G	ENSG00000067829.19	ENST00000370092.7:ENST00000370093.5:ENST00000454076.5:ENST00000217901.10:ENST00000427365.6	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.39747	3.3711700000000002	4.34487	0.0430221	0.0123678	0.161091	0.0705839
chr16	177274	177282	15480750	0	+	0.625	(0.59,1]	chr16	1224208	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	3.08707	3.37108	3.65509	8.79989e-4	5.95213e-4	0.0107294	0.00746384
chr10	104266136	104266190	11236842	0	+	0.444444	(0.42,0.455]	chr10	856324	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSTO1	ENSG00000148834.13	ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	2.94325	3.37103	3.79881	1.65328e-4	1.00632e-4	0.0029267300000000002	0.00181216
chr1	30733632	30733729	915558	0	-	0.628866	(0.59,1]	chr1	95861	13	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	3.0544	3.3710199999999997	3.68764	2.52807e-4	4.42534e-5	0.00381058	0.00102453
chr1	92836256	92836324	354103	0	+	0.514706	(0.49,0.53]	chr1	34833	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000315741.5:ENST00000461952.1:ENST00000645908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	91	2	3.27431	3.371005	3.4677	1.06651e-5	2.55367e-6	3.17854e-4	8.83735e-5
chr16	70570005	70570077	15730158	0	+	0.569444	(0.53,0.59]	chr16	1253019	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	3.11992	3.3709800000000003	3.62204	4.3021e-4	1.09102e-4	0.00620274	0.00194222
chr1	54850687	54850784	1030555	0	-	0.474227	(0.455,0.49]	chr1	106987	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	1.96875	3.370965	4.77318	0.0480352	4.7888e-4	0.180552	0.00628636
chr16	53157251	53157347	15665902	0	+	0.46875	(0.455,0.49]	chr16	1245065	12	CDS	CDS:UTR5:EXON_MRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	1.96875	3.370965	4.77318	0.0480352	4.7888e-4	0.180552	0.00628636
chrX	120526560	120526660	19196673	0	-	0.31	(0.29,0.33]	chrX	1632024	208	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000679965.1:ENST00000681263.1:ENST00000681706.1:ENST00000681908.1:ENST00000681652.1:ENST00000681487.1:ENST00000679432.1:ENST00000680474.1:ENST00000681864.1:ENST00000681236.1:ENST00000404115.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	2.17855	3.3709550000000004	4.56336	0.0183673	8.8231e-4	0.0928041	0.0101404
chr17	49405091	49405147	16581149	0	-	0.607143	(0.59,1]	chr17	1362360	1	CDS	CDS:EXON_MRNA	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000511933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	38	2	2.47837	3.370955	4.26354	0.0134233	0.00970721	0.0743429	0.0608296
chr1	154260963	154261036	480054	0	+	0.575342	(0.53,0.59]	chr1	49713	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1:ENST00000475373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	68	2	3.17316	3.370895	3.56863	7.8686e-5	3.93456e-5	0.00164157	8.48445e-4
chr1	109354366	109354448	1219891	0	-	0.402439	(0.39,0.42]	chr1	119020	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.24847	3.370855	4.49324	0.00147373	0.00108192	0.0150084	0.0124943
chr14	64454774	64454826	14344196	0	+	0.519231	(0.49,0.53]	chr14	1121387	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1:ENST00000651891.1:ENST00000556284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.18239	3.37084	4.55929	0.024394	0.00116196	0.111797	0.0130851
chr18	45991901	45991983	17102927	0	-	0.5	(0.49,0.53]	chr18	1404280	1	CDS	CDS:EXON_MRNA:INTRON	PSTPIP2	ENSG00000152229.18	ENST00000409746.5:ENST00000589328.5:ENST00000588801.5:ENST00000593086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.18239	3.37084	4.55929	0.024394	0.00116196	0.111797	0.0130851
chr2	128103931	128104014	2059601	0	+	0.349398	(0.33,0.36]	chr2	193169	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000430075.5:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.61283	3.370615	4.1284	0.00407303	7.60348e-4	0.0324137	0.00908558
chr3	128069475	128069562	3725185	0	+	0.666667	(0.59,1]	chr3	318513	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1:ENST00000498837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	130	2	2.83882	3.370425	3.90203	3.31383e-4	1.11836e-5	0.00505787	3.02696e-4
chr16	22534615	22534713	15591472	0	+	0.530612	(0.53,0.59]	chr16	1236299	10	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	3.12943	3.37038	3.61133	4.81557e-4	4.55298e-4	0.00677016	0.00608573
chr1	11972871	11972934	45485	0	+	0.587302	(0.53,0.59]	chr1	5805	1	CDS	CDS:EXON_MRNA:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	97	2	1.94437	3.370345	4.79632	0.0143432	3.31333e-9	0.0783202	2.9839e-7
chr1	173785921	173786017	549956	0	+	0.364583	(0.36,0.39]	chr1	58402	8	UTR3	UTR3:EXON_MRNA	KLHL20	ENSG00000076321.11	ENST00000209884.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.02118	3.37022	4.71926	0.0251625	5.29682e-4	0.117055	0.006804
chr21	37225350	37225446	18244243	0	-	0.375	(0.36,0.39]	chr21	1547397	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11:ENST00000399001.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	2.02118	3.37022	4.71926	0.0251625	5.29682e-4	0.117055	0.006804
chr21	45512298	45512398	18145954	0	+	0.62	(0.59,1]	chr21	1539867	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.89474	3.370155	3.84557	0.0410704	0.00190546	0.163285	0.018313
chr5	131264566	131264666	6220469	0	+	0.68	(0.59,1]	chr5	484053	4	SS5_PROX	SS5_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.89474	3.370155	3.84557	0.0410704	0.00190546	0.163285	0.018313
chr3	195786334	195786433	4661130	0	-	0.575758	(0.53,0.59]	chr3	385270	77	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	1.87133	3.3697799999999996	4.86823	0.0308819	4.35895e-4	0.130016	0.00623608
chr2	74361201	74361300	2742026	0	-	0.575758	(0.53,0.59]	chr2	244130	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-287D1.3:DCTN1	ENSG00000264324.1:ENSG00000204843.13	ENST00000451608.2:ENST00000394003.7:ENST00000361874.8:ENST00000680606.1:ENST00000628224.3:ENST00000497666.1:ENST00000491465.5:ENST00000434055.5:ENST00000409240.5:ENST00000409438.5:ENST00000633691.1:ENST00000409868.5:ENST00000466110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	1.96733	3.3697749999999997	4.77222	0.022694	6.67251e-4	0.105117	0.00867533
chr7	16783681	16783776	8149506	0	+	0.473684	(0.455,0.49]	chr7	622215	3	UTR3	UTR3:EXON_MRNA	TSPAN13	ENSG00000106537.8	ENST00000262067.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.71913	3.369765	4.0204	0.00736097	0.00103266	0.0490627	0.011478
chr3	14943377	14943477	4050030	0	-	0.36	(0.33,0.36]	chr3	340108	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	3.13748	3.36973	3.60198	0.00379835	6.01238e-4	0.0307587	0.00811676
chr7	143306918	143307015	8581153	0	+	0.474227	(0.455,0.49]	chr7	655693	20	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.24913	3.36973	3.49033	0.00239443	7.92678e-4	0.0225356	0.00933379
chrX	141906106	141906206	18883527	0	+	0.48	(0.455,0.49]	chrX	1608997	8	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.24913	3.36973	3.49033	0.00239443	7.92678e-4	0.0225356	0.00933379
chrX	120072263	120072347	19194057	0	-	0.345238	(0.33,0.36]	chrX	1631789	1	UTR3	UTR3:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.7655	3.36965	3.9738	0.0175892	5.94302e-5	0.0918323	0.00119141
chr17	32370152	32370250	16200652	0	+	0.387755	(0.36,0.39]	chr17	1308199	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	71	2	2.92949	3.36951	3.80953	6.0267e-5	8.12035e-7	0.00131045	3.35153e-5
chr12	110373568	110373664	13536799	0	-	0.40625	(0.39,0.42]	chr12	1064793	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000481473.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.18155	3.36939	4.55723	0.0283931	0.00117753	0.127654	0.0127276
chr15	44561732	44561830	14899896	0	+	0.367347	(0.36,0.39]	chr15	1171685	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	2.99569	3.36926	3.74283	7.37624e-5	1.50915e-5	0.00141413	4.23797e-4
chr3	101686676	101686718	4331716	0	-	0.5	(0.49,0.53]	chr3	361352	1	UTR5	UTR5:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000469605.1:ENST00000470961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	531	2	2.75015	3.36924	3.98833	3.72003e-7	2.06957e-12	1.92638e-5	4.32097e-10
chr1	112670626	112670725	411478	0	+	0.383838	(0.36,0.39]	chr1	40540	6	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	18	158	2	3.11579	3.368735	3.62168	8.29507e-7	6.433e-9	3.78797e-5	5.27339e-7
chr20	49279115	49279208	17812176	0	+	0.526882	(0.49,0.53]	chr20	1506714	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA	ZFAS1:ENSG10010138057.1	ENSG00000177410.13:ENSG00000274760.1	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000667889.1:ENST00000663883.1:ENST00000610973.1:ENST00000623640.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:retained_intron:lncRNA	20	221	2	2.39402	3.3687199999999997	4.34342	5.8379e-5	2.41787e-11	0.00129108	3.83432e-9
chrX	141906905	141907005	18883535	0	+	0.49	(0.455,0.49]	chrX	1608997	16	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.92099	3.368615	3.81624	0.00138399	1.48205e-4	0.0143168	0.00269793
chr5	110949895	110949993	6760097	0	-	0.44898	(0.42,0.455]	chr5	519064	20	EXON_PSEUDO	EXON_PSEUDO	BCLAF1P1	ENSG00000248966.1	ENST00000505813.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.34191	3.368295	4.39468	0.0159091	0.00240483	0.0854674	0.0217482
chr1	110021680	110021778	401922	0	+	0.357143	(0.33,0.36]	chr1	39336	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	3.25183	3.36784	3.48385	3.87102e-4	9.93473e-6	0.00578322	2.74996e-4
chr2	61188989	61189069	2687387	0	-	0.5	(0.49,0.53]	chr2	239907	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1:ENST00000492604.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.49797	3.3677799999999998	4.23759	0.00843736	0.00436474	0.0546021	0.0335517
chr16	18531465	18531536	15876601	0	-	0.507042	(0.49,0.53]	chr16	1269177	1	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000569051.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.6129	3.367765	4.12263	0.00591451	0.0052746	0.0427941	0.0389109
chr8	102650311	102650391	9984325	0	-	0.5	(0.49,0.53]	chr8	753404	2	CDS	CDS:EXON_MRNA	KLF10	ENSG00000155090.15	ENST00000285407.11:ENST00000395884.3	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.6129	3.367765	4.12263	0.00591451	0.0052746	0.0427941	0.0389109
chr2	169638916	169639016	2196726	0	+	0.34	(0.33,0.36]	chr2	201011	15	UTR3	UTR3:EXON_MRNA	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000677750.1:ENST00000678721.1:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	3.15976	3.367675	3.57559	0.0262108	0.00437542	0.117079	0.0340502
chr3	196585503	196585602	3988258	0	+	0.353535	(0.33,0.36]	chr3	336035	13	UTR3	UTR3:EXON_MRNA	FBXO45	ENSG00000174013.8	ENST00000440469.1:ENST00000311630.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.15976	3.367675	3.57559	0.0262108	0.00437542	0.117079	0.0340502
chr1	230274444	230274504	749749	0	+	0.516667	(0.49,0.53]	chr1	76080	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	1.99044	3.3674099999999996	4.74438	0.0435903	5.91752e-4	0.170594	0.00743488
chr1	46286402	46286499	981899	0	-	0.474227	(0.455,0.49]	chr1	103530	4	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr10	50265750	50265847	11040778	0	+	0.484536	(0.455,0.49]	chr10	841130	9	EXON_PSEUDO	EXON_PSEUDO	DYNC1I2P1	ENSG00000225137.1	ENST00000435916.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr11	118503582	118503681	12158951	0	+	0.464646	(0.455,0.49]	chr11	937104	13	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr12	14460859	14460950	12745115	0	+	0.483516	(0.455,0.49]	chr12	990777	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATF7IP	ENSG00000171681.13	ENST00000537653.5:ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000541654.1:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr19	58406407	58406506	17642740	0	-	0.484848	(0.455,0.49]	chr19	1491023	23	EXON_LNCRNA	EXON_LNCRNA	CTD-2619J13.14	ENSG00000232098.3	ENST00000593393.1:ENST00000597309.1	lncRNA	lncRNA	lncRNA	lncRNA	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr2	218595532	218595629	2390081	0	+	0.484536	(0.455,0.49]	chr2	214856	14	UTR3	UTR3:EXON_MRNA	CNOT9	ENSG00000144580.14	ENST00000542068.5:ENST00000273064.11	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr3	38142154	38142250	3419198	0	+	0.458333	(0.455,0.49]	chr3	297125	10	UTR3	UTR3:EXON_MRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000484513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr4	88728036	88728135	5523100	0	-	0.464646	(0.455,0.49]	chr4	442347	22	UTR3	UTR3:EXON_MRNA	FAM13A	ENSG00000138640.15	ENST00000395002.6:ENST00000264344.10:ENST00000511573.5:ENST00000509478.5:ENST00000503556.5:ENST00000511976.5:ENST00000508369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr6	87664742	87664800	7271067	0	+	0.482759	(0.455,0.49]	chr6	560549	1	CDS	CDS:EXON_MRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.53286	3.367375	4.20189	0.0282409	0.00397662	0.124386	0.0322851
chr19	14397657	14397730	17242404	0	+	0.575342	(0.53,0.59]	chr19	1421814	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADGRE5	ENSG00000123146.20	ENST00000587728.5:ENST00000358600.7:ENST00000586517.5:ENST00000357355.7:ENST00000242786.6:ENST00000591737.1:ENST00000593028.1:ENST00000586849.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	3.1234	3.3673650000000004	3.61133	0.00390623	4.55298e-4	0.0322851	0.00608573
chr17	16433635	16433698	16142018	0	+	0.603175	(0.59,1]	chr17	1300730	2	CDS	CDS:EXON_MRNA:INTRON	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000577277.6:ENST00000581560.5:ENST00000580788.6:ENST00000577865.2:ENST00000475513.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.4994	3.36735	4.2353	0.0333573	0.0165254	0.137922	0.0873033
chr17	81282260	81282332	16707191	0	-	0.666667	(0.59,1]	chr17	1377220	2	CDS	CDS:EXON_MRNA	SLC38A10	ENSG00000157637.13	ENST00000374759.8:ENST00000542075.5:ENST00000288439.9:ENST00000543204.1:ENST00000539748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.4994	3.36735	4.2353	0.0333573	0.0165254	0.137922	0.0873033
chr19	51346899	51346978	17614059	0	-	0.64557	(0.59,1]	chr19	1485855	1	CDS	CDS:EXON_MRNA	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1:ENST00000594361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.4994	3.36735	4.2353	0.0333573	0.0165254	0.137922	0.0873033
chr9	33922686	33922782	10633429	0	-	0.625	(0.59,1]	chr9	803792	1	CDS	CDS:UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.4994	3.36735	4.2353	0.0333573	0.0165254	0.137922	0.0873033
chr16	21404422	21404522	15888075	0	-	0.63	(0.59,1]	chr16	1271077	3	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.28778	3.3672450000000005	4.44671	0.0556537	0.00931497	0.191528	0.0586162
chr15	34862866	34862953	15206698	0	-	0.45977	(0.455,0.49]	chr15	1197270	1	CDS	CDS:UTR3:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6:ENST00000559090.5:ENST00000559767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.61558	3.36707	4.1185600000000004	0.00184897	2.49433e-5	0.0185736	5.8178e-4
chr7	100095386	100095470	8949645	0	-	0.595238	(0.59,1]	chr7	683519	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000493352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	132	2	3.24666	3.366925	3.48719	1.28347e-4	3.09674e-5	0.00241206	6.93274e-4
chr21	34096961	34097059	18104986	0	+	0.510204	(0.49,0.53]	chr21	1534981	18	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	46	2	2.90042	3.3668050000000003	3.83319	3.88511e-4	1.34601e-4	0.00534839	0.00249552
chr9	99970659	99970759	10385858	0	+	0.39	(0.36,0.39]	chr9	782500	21	UTR3	UTR3:EXON_MRNA	STX17	ENSG00000136874.11	ENST00000259400.11	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.93136	3.3668050000000003	3.80225	0.00811967	1.85308e-4	0.0528637	0.00322093
chr19	40614314	40614380	17330373	0	+	0.681818	(0.59,1]	chr19	1436016	1	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000612121.4:ENST00000600499.5:ENST00000610893.4:ENST00000612845.4:ENST00000599724.5:ENST00000597071.5:ENST00000595118.5:ENST00000602251.5:ENST00000622565.4:ENST00000593463.5:ENST00000618486.4:ENST00000318809.11:ENST00000597816.5:ENST00000601464.5:ENST00000596351.5:ENST00000622107.4:ENST00000617753.4:ENST00000594448.5:ENST00000595665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	2.9891200000000002	3.366795	3.74447	0.00823979	2.8028e-5	0.0540283	6.41211e-4
chrX	85090051	85090150	18751853	0	+	0.484848	(0.455,0.49]	chrX	1600208	25	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.84079	3.3665700000000003	3.89235	0.00201021	9.60445e-5	0.0190112	0.00190731
chr1	44756155	44756237	173946	0	+	0.378049	(0.36,0.39]	chr1	22353	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	68	2	3.03464	3.366495	3.69835	3.2708e-4	4.6422e-6	0.00502339	1.45633e-4
chr15	41380282	41380378	14886250	0	+	0.375	(0.36,0.39]	chr15	1169383	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	128	2	3.2492	3.36647	3.48374	2.68682e-7	2.24048e-7	1.46147e-5	1.1173e-5
chr2	53865196	53865290	2664090	0	-	0.404255	(0.39,0.42]	chr2	238111	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.70591	3.36639	4.02687	0.0185716	4.35816e-5	0.0932453	0.00091744700000000005
chr12	96027443	96027503	13485247	0	-	0.5	(0.49,0.53]	chr12	1060559	1	CDS	CDS:EXON_MRNA	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.3044	3.36615	4.4279	0.0509448	0.00196987	0.181793	0.0193972
chr7	50403510	50403609	8279166	0	+	0.50505	(0.49,0.53]	chr7	630737	30	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.3044	3.36615	4.4279	0.0509448	0.00196987	0.181793	0.0193972
chr9	128288651	128288716	10477773	0	+	0.492308	(0.49,0.53]	chr9	789835	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SWI5	ENSG00000175854.14	ENST00000495313.5:ENST00000372898.6:ENST00000652598.1:ENST00000608796.6:ENST00000418976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.3044	3.36615	4.4279	0.0509448	0.00196987	0.181793	0.0193972
chr12	9696168	9696267	12728915	0	+	0.343434	(0.33,0.36]	chr12	989545	14	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	CLEC2D:NPM1P7	ENSG00000069493.15:ENSG00000213443.2	ENST00000290855.11:ENST00000396690.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	17	2	2.91384	3.36608	3.81832	0.0135793	0.0021527	0.0745701	0.0208395
chr11	14481043	14481097	12281798	0	-	0.407407	(0.39,0.42]	chr11	949639	2	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.0503	3.36592	3.68154	0.00570576	3.05414e-4	0.0424438	0.00442973
chr17	82614657	82614754	16713205	0	-	0.391753	(0.39,0.42]	chr17	1378758	2	UTR3	UTR3:EXON_MRNA	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000576517.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.0503	3.36592	3.68154	0.00570576	3.05414e-4	0.0424438	0.00442973
chr2	47786660	47786759	1788063	0	+	0.282828	[0,0.29]	chr2	172645	18	INTRON	INTRON	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000456246.1:ENST00000234420.11:ENST00000673922.1:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000455383.5:ENST00000538136.1:ENST00000420813.5:ENST00000411819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	3.0735	3.3657000000000004	3.6579	0.0197988	0.00785095	0.0983378	0.0520241
chr3	16260470	16260568	4056022	0	-	0.27551	[0,0.29]	chr3	340906	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DPH3	ENSG00000154813.10	ENST00000488423.2:ENST00000383775.4:ENST00000285082.8:ENST00000462982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	3.0735	3.3657000000000004	3.6579	0.0197988	0.00785095	0.0983378	0.0520241
chr10	93284095	93284188	11625741	0	-	0.526882	(0.49,0.53]	chr10	884964	2	EXON_PSEUDO	EXON_PSEUDO	RPL17P34	ENSG00000213432.2	ENST00000394133.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr11	62705356	62705412	12410455	0	-	0.517857	(0.49,0.53]	chr11	961459	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BSCL2:HNRNPUL2-BSCL2	ENSG00000168000.16:ENSG00000234857.2	ENST00000683892.1:ENST00000684475.1:ENST00000684285.1:ENST00000682555.1:ENST00000682262.1:ENST00000684115.1:ENST00000683025.1:ENST00000449636.6:ENST00000403734.2:ENST00000679883.1:ENST00000405837.5:ENST00000683296.1:ENST00000360796.10:ENST00000278893.11:ENST00000684067.1:ENST00000683494.1:ENST00000524862.6:ENST00000407022.7:ENST00000403550.5:ENST00000301781.10:ENST00000421906.5:ENST00000682794.1:ENST00000682223.1:ENST00000684609.1:ENST00000684720.1:ENST00000682644.1:ENST00000448568.6:ENST00000531524.5:ENST00000537604.5:ENST00000530900.1:ENST00000533982.1:ENST00000532818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr15	22882939	22883011	15159036	0	-	0.527778	(0.49,0.53]	chr15	1192900	2	CDS	CDS:EXON_MRNA	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000617556.4:ENST00000610365.4:ENST00000619348.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr21	31701775	31701846	18211513	0	-	0.521127	(0.49,0.53]	chr21	1545344	1	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr22	50505744	50505815	18547928	0	-	0.507042	(0.49,0.53]	chr22	1585018	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMF2	ENSG00000100258.18	ENST00000474879.7:ENST00000216080.5:ENST00000514938.1:ENST00000505981.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr4	150325808	150325898	5726070	0	-	0.5	(0.49,0.53]	chr4	452712	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr5	177502473	177502568	6991861	0	-	0.515789	(0.49,0.53]	chr5	534990	7	UTR3	UTR3:EXON_MRNA	DOK3	ENSG00000146094.16	ENST00000510898.7:ENST00000312943.10:ENST00000377112.8:ENST00000500323.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr7	107893199	107893278	8457196	0	+	0.493671	(0.49,0.53]	chr7	646265	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DLD	ENSG00000091140.14	ENST00000485066.1:ENST00000417551.5:ENST00000415325.5:ENST00000639772.1:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000450038.5:ENST00000453354.5:ENST00000460577.5:ENST00000494441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.78962	3.365695	3.94177	0.0129044	0.0104929	0.0725185	0.063428
chr1	16455817	16455893	73145	0	+	0.565789	(0.53,0.59]	chr1	8506	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NECAP2	ENSG00000157191.20	ENST00000504551.6:ENST00000337132.10:ENST00000457722.6:ENST00000443980.6:ENST00000492095.5:ENST00000459640.5:ENST00000496239.5:ENST00000513161.1:ENST00000509727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	20	2	3.11275	3.3656550000000003	3.61856	0.0303021	0.00407571	0.129773	0.032143
chr12	6831824	6831914	12714540	0	+	0.588889	(0.53,0.59]	chr12	986940	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	P3H3	ENSG00000110811.20	ENST00000290510.10:ENST00000536140.5:ENST00000612048.4:ENST00000538102.5:ENST00000541956.5:ENST00000544200.5:ENST00000544949.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.11275	3.3656550000000003	3.61856	0.0303021	0.00407571	0.129773	0.032143
chr17	7499420	7499491	16105143	0	+	0.535211	(0.53,0.59]	chr17	1296726	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1:ENST00000575547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	20	2	3.11275	3.3656550000000003	3.61856	0.0303021	0.00407571	0.129773	0.032143
chr2	219250942	219251040	3191524	0	-	0.55102	(0.53,0.59]	chr2	280988	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6:ENST00000498660.1:ENST00000398989.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	20	2	3.11275	3.3656550000000003	3.61856	0.0303021	0.00407571	0.129773	0.032143
chr7	2433309	2433404	8096718	0	+	0.589474	(0.53,0.59]	chr7	618953	7	CDS	CDS:EXON_MRNA	CHST12	ENSG00000136213.10	ENST00000258711.7:ENST00000618655.2:ENST00000432336.1	protein_coding	protein_coding	protein_coding	protein_coding	1	20	2	3.11275	3.3656550000000003	3.61856	0.0303021	0.00407571	0.129773	0.032143
chr6	32168984	32169081	7664649	0	-	0.587629	(0.53,0.59]	chr6	586094	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	128	2	3.34401	3.36556	3.38711	6.89617e-6	6.83211e-7	2.23425e-4	2.89518e-5
chr22	38684038	38684137	18367290	0	+	0.494949	(0.49,0.53]	chr22	1562625	3	UTR3	UTR3:EXON_MRNA	TOMM22	ENSG00000100216.6	ENST00000216034.6:ENST00000492561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.05119	3.365455	4.67972	0.0360743	6.94757e-4	0.145024	0.00876781
chr3	182865617	182865698	3944351	0	+	0.37037	(0.36,0.39]	chr3	331180	3	CDS	CDS:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5:ENST00000490303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.63521	3.36543	4.09565	0.00633242	2.81403e-5	0.0446708	6.42183e-4
chrX	66256254	66256330	18718199	0	+	0.460526	(0.455,0.49]	chrX	1597054	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.9967	3.36541	3.73412	0.00650423	1.26741e-5	0.0454205	3.34022e-4
chr1	28237978	28238041	115328	0	+	0.507937	(0.49,0.53]	chr1	14097	1	UTR3	UTR3:EXON_MRNA:INTRON	ATP5IF1	ENSG00000130770.18	ENST00000497986.5:ENST00000335514.10:ENST00000468425.2:ENST00000465645.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.30264	3.3652699999999998	4.4279	0.0165402	0.00196987	0.087611	0.0193972
chr3	32996869	32996956	4110936	0	-	0.505747	(0.49,0.53]	chr3	343424	4	UTR3	UTR3:EXON_MRNA	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.30264	3.3652699999999998	4.4279	0.0165402	0.00196987	0.087611	0.0193972
chr15	40393689	40393782	14881319	0	+	0.376344	(0.36,0.39]	chr15	1168511	2	UTR3	UTR3:EXON_MRNA	KNSTRN	ENSG00000128944.13	ENST00000249776.12:ENST00000560981.5:ENST00000416151.6:ENST00000448395.6:ENST00000608100.5:ENST00000561169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	3.33241	3.36522	3.39803	0.00193631	0.00122711	0.0192272	0.0130695
chr16	50317745	50317842	15654883	0	+	0.381443	(0.36,0.39]	chr16	1244239	24	UTR3	UTR3:EXON_MRNA	ADCY7	ENSG00000121281.13	ENST00000394697.7:ENST00000673801.1:ENST00000673973.1:ENST00000254235.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	3.33241	3.36522	3.39803	0.00193631	0.00122711	0.0192272	0.0130695
chr20	50124859	50124958	18004579	0	-	0.474747	(0.455,0.49]	chr20	1526012	68	UTR3	UTR3:EXON_MRNA:INTRON	PEDS1-UBE2V1:PEDS1	ENSG00000124208.16:ENSG00000240849.11	ENST00000341698.2:ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	3.26623	3.36506	3.46389	9.14164e-4	2.31662e-4	0.0110519	0.00354314
chr19	39435657	39435708	17563248	0	-	0.568627	(0.53,0.59]	chr19	1475630	2	CDS	CDS:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	181	2	2.58889	3.36499	4.14109	3.6143e-5	2.61205e-9	8.7366e-4	2.43727e-7
chr1	205789776	205789874	1462461	0	-	0.5	(0.49,0.53]	chr1	147533	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.30189	3.364895	4.4279	0.00685554	0.00196987	0.0471063	0.0193972
chr14	102017408	102017508	14495522	0	+	0.51	(0.49,0.53]	chr14	1133125	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000645114.2:ENST00000643764.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	36	2	1.56417	3.36487	5.16557	0.0289719	6.36135e-5	0.127437	0.00136069
chr11	57489250	57489321	12394719	0	-	0.521127	(0.49,0.53]	chr11	958743	1	CDS	CDS:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.78794	3.364855	3.94177	0.0104929	0.00251838	0.063428	0.0226599
chr2	128000380	128000454	2870158	0	-	0.527027	(0.49,0.53]	chr2	256642	2	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.78794	3.364855	3.94177	0.0104929	0.00251838	0.063428	0.0226599
chr12	93640821	93640916	13473453	0	-	0.568421	(0.53,0.59]	chr12	1059444	1	EXON_PSEUDO	EXON_PSEUDO	RP11-887P2.3	ENSG00000186076.5	ENST00000548270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	52	2	2.68432	3.3648	4.04528	0.00118971	4.28524e-5	0.0128045	9.98851e-4
chr3	38007772	38007858	4121225	0	-	0.546512	(0.53,0.59]	chr3	344553	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLCD1	ENSG00000187091.14	ENST00000334661.5:ENST00000461445.5:ENST00000417185.6:ENST00000463876.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.79311	3.364795	3.93648	6.84253e-4	8.06385e-5	0.00836671	0.00167444
chr11	64320792	64320864	11980510	0	+	0.527778	(0.49,0.53]	chr11	919244	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.26641	3.36472	4.46303	0.0190546	2.57025e-6	0.093872	8.8687100000000007e-05
chr19	3985380	3985463	17430281	0	-	0.662651	(0.59,1]	chr19	1454745	1	UTR5	UTR5:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000594885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	138	3080	2	2.79939	3.36465	3.92991	1.27902e-6	9.49962e-11	5.44765e-5	1.30021e-8
chr10	70426725	70426825	11100498	0	+	0.36	(0.33,0.36]	chr10	844350	51	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.15976	3.364625	3.56949	0.00437542	5.48184e-4	0.0340502	0.00697082
chr4	139351557	139351611	5128076	0	+	0.351852	(0.33,0.36]	chr4	415177	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000480277.2:ENST00000468029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	3.15976	3.364625	3.56949	0.00437542	5.48184e-4	0.0340502	0.00697082
chr1	110899558	110899649	405639	0	+	0.516484	(0.49,0.53]	chr1	39842	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	3.23781	3.36462	3.49143	6.13943e-5	5.17993e-5	0.00122382	0.00115752
chr8	140526248	140526348	10132105	0	-	0.45	(0.42,0.455]	chr8	760954	62	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.32646	3.36461	4.40276	0.00624136	0.0017618	0.0443844	0.0180053
chr9	120816734	120816832	10833856	0	-	0.357143	(0.33,0.36]	chr9	820467	8	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	2.90152	3.3645300000000002	3.82754	3.9727e-5	7.00235e-7	9.49417e-4	2.94691e-5
chr14	77468456	77468508	14415658	0	+	0.442308	(0.42,0.455]	chr14	1126875	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	AHSA1	ENSG00000100591.8	ENST00000555133.5:ENST00000535854.6:ENST00000216479.8:ENST00000555457.5:ENST00000555729.3:ENST00000555473.1:ENST00000556369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.32629	3.364525	4.40276	0.0153564	0.0017618	0.0832114	0.0180053
chr3	161250810	161250910	3857932	0	+	0.45	(0.42,0.455]	chr3	327667	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.32629	3.364525	4.40276	0.0153564	0.0017618	0.0832114	0.0180053
chr19	11120369	11120445	17230187	0	+	0.605263	(0.59,1]	chr19	1419612	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.83039	3.3644	3.89841	8.24076e-4	1.91539e-4	0.0102141	0.00304814
chr22	21643893	21643984	18303283	0	+	0.648352	(0.59,1]	chr22	1554235	1	CDS	CDS:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5	protein_coding	protein_coding	protein_coding	protein_coding	7	158	2	3.21796	3.3643400000000003	3.51072	1.19139e-4	6.11079e-6	0.00226351	1.83393e-4
chr14	51249467	51249518	14278800	0	+	0.431373	(0.42,0.455]	chr14	1116413	1	CDS	CDS:UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.3259	3.36433	4.40276	0.0484606	0.0017618	0.175495	0.0180053
chr18	23541305	23541369	17037363	0	-	0.421875	(0.42,0.455]	chr18	1400567	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.3259	3.36433	4.40276	0.0484606	0.0017618	0.175495	0.0180053
chr2	128192017	128192116	2060532	0	+	0.454545	(0.42,0.455]	chr2	193397	24	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.3259	3.36433	4.40276	0.0484606	0.0017618	0.175495	0.0180053
chr8	38995315	38995403	9797947	0	-	0.420455	(0.42,0.455]	chr8	741020	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TM2D2	ENSG00000169490.17	ENST00000456397.7:ENST00000456845.6:ENST00000397070.6:ENST00000522434.5:ENST00000522142.1:ENST00000521060.1:ENST00000519186.1:ENST00000517872.1:ENST00000520152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.3259	3.36433	4.40276	0.0484606	0.0017618	0.175495	0.0180053
chr16	84778894	84778963	15791034	0	+	0.565217	(0.53,0.59]	chr16	1256727	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	2.90978	3.364085	3.81839	0.0184435	0.00857883	0.0945306	0.0552386
chrX	49551336	49551396	18694870	0	+	0.533333	(0.53,0.59]	chrX	1594936	2	UTR5	UTR5:EXON_MRNA	GAGE12F:GAGE12E	ENSG00000236362.8:ENSG00000216649.4	ENST00000639028.1:ENST00000381698.4	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.90978	3.364085	3.81839	0.0184435	0.00857883	0.0945306	0.0552386
chr10	73766445	73766541	11115820	0	+	0.510417	(0.49,0.53]	chr10	845889	2	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.49797	3.3639150000000004	4.22986	0.00843736	1.25249e-5	0.0546021	3.30689e-4
chr6	44148868	44148945	7160977	0	+	0.519481	(0.49,0.53]	chr6	553584	2	CDS	CDS:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000534326.5:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	2.49797	3.3639150000000004	4.22986	0.00843736	1.25249e-5	0.0546021	3.30689e-4
chr9	133154174	133154261	10879526	0	-	0.517241	(0.49,0.53]	chr9	825596	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.49797	3.3639150000000004	4.22986	0.00843736	1.25249e-5	0.0546021	3.30689e-4
chr7	30922147	30922230	8206191	0	+	0.674699	(0.59,1]	chr7	626028	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000482461.1:ENST00000409899.5:ENST00000409611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.66274	3.3636549999999996	4.06457	0.00482151	9.48087e-5	0.0365653	0.00188744
chr18	3278024	3278111	16729916	0	+	0.367816	(0.36,0.39]	chr18	1380136	2	UTR3	UTR3:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	26	205	2	2.93399	3.36364	3.79329	2.51203e-7	8.69378e-10	1.23437e-5	1.01617e-7
chr6	31816143	31816239	7116664	0	+	0.666667	(0.59,1]	chr6	546204	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	8	172	2	2.98334	3.363555	3.74377	6.55812e-5	5.81826e-6	0.00128001	1.92108e-4
chr14	102016843	102016921	14495514	0	+	0.615385	(0.59,1]	chr14	1133120	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000645114.2:ENST00000643764.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.76006	3.363305	3.96655	0.00330486	1.54087e-4	0.027613	0.00279744
chr3	67375090	67375183	4255646	0	-	0.268817	[0,0.29]	chr3	357238	5	UTR3	UTR3:EXON_MRNA:INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.61628	3.36329	4.1103	0.0101434	0.00493104	0.0626311	0.0366648
chr10	6428012	6428109	11354614	0	-	0.453608	(0.42,0.455]	chr10	866019	10	UTR3	UTR3:EXON_MRNA	PRKCQ	ENSG00000065675.15	ENST00000397176.6:ENST00000539722.5:ENST00000610727.1:ENST00000263125.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr13	28256373	28256456	13660654	0	+	0.433735	(0.42,0.455]	chr13	1076635	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1:ENST00000483842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr16	84977159	84977225	16063287	0	-	0.439394	(0.42,0.455]	chr16	1290324	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564526.1:ENST00000564466.5:ENST00000569377.1:ENST00000566909.1:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr17	18209175	18209272	16150150	0	+	0.42268	(0.42,0.455]	chr17	1301927	9	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000541285.1:ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr17	36989246	36989328	16212379	0	+	0.439024	(0.42,0.455]	chr17	1309824	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000680807.1:ENST00000679985.1:ENST00000679508.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000610798.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr17	47928579	47928673	16252783	0	+	0.446809	(0.42,0.455]	chr17	1316953	9	UTR3	UTR3:EXON_MRNA	SP2	ENSG00000167182.15	ENST00000376741.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr3	5216016	5216115	3278581	0	+	0.454545	(0.42,0.455]	chr3	288860	2	UTR3	UTR3:EXON_MRNA	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr4	56968383	56968449	5435636	0	-	0.439394	(0.42,0.455]	chr4	435213	1	CDS	CDS:EXON_MRNA	NOA1	ENSG00000084092.7	ENST00000264230.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr5	37085353	37085453	5936682	0	+	0.43	(0.42,0.455]	chr5	465630	4	EXON_PSEUDO	EXON_PSEUDO	RPS4XP6	ENSG00000244073.1	ENST00000477670.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr5	78002613	78002709	6651873	0	-	0.4375	(0.42,0.455]	chr5	513893	4	UTR3	UTR3:EXON_MRNA	AP3B1	ENSG00000132842.14	ENST00000255194.11:ENST00000519295.5:ENST00000522901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.66697	3.363255	4.05954	0.0190326	0.00617886	0.0958835	0.0439741
chr1	78017582	78017677	314203	0	+	0.357895	(0.33,0.36]	chr1	31951	15	UTR3	UTR3:EXON_MRNA:INTRON	GIPC2:DNAJB4	ENSG00000137960.6:ENSG00000162616.9	ENST00000476882.1:ENST00000370763.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.51887	3.3632150000000003	4.20756	0.0358636	0.00386591	0.147298	0.0310764
chr1	202728353	202728450	1451708	0	-	0.340206	(0.33,0.36]	chr1	145774	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.51887	3.3632150000000003	4.20756	0.0358636	0.00386591	0.147298	0.0310764
chr11	18612313	18612400	12303794	0	-	0.344828	(0.33,0.36]	chr11	951672	1	CDS	CDS:EXON_MRNA	SPTY2D1	ENSG00000179119.15	ENST00000336349.6:ENST00000536336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.51887	3.3632150000000003	4.20756	0.0358636	0.00386591	0.147298	0.0310764
chr6	16137092	16137191	7067143	0	+	0.353535	(0.33,0.36]	chr6	540838	60	INTRON	INTRON	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.51887	3.3632150000000003	4.20756	0.0358636	0.00386591	0.147298	0.0310764
chr8	60621083	60621181	9353520	0	+	0.346939	(0.33,0.36]	chr8	715323	4	UTR3	UTR3:EXON_MRNA	RAB2A	ENSG00000104388.15	ENST00000262646.12	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.51887	3.3632150000000003	4.20756	0.0358636	0.00386591	0.147298	0.0310764
chr1	156325030	156325089	1314191	0	-	0.559322	(0.53,0.59]	chr1	133445	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.8006	3.3631650000000004	3.92573	0.00233666	8.62301e-5	0.0221314	0.00160749
chr10	67916992	67917092	11088527	0	+	0.29	[0,0.29]	chr10	842668	5	UTR3	UTR3:EXON_MRNA	SIRT1	ENSG00000096717.12	ENST00000212015.11:ENST00000432464.5:ENST00000406900.5:ENST00000403579.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr10	125841551	125841648	11305303	0	+	0.257732	[0,0.29]	chr10	862173	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCCIP	ENSG00000107949.17	ENST00000368759.5:ENST00000299130.7	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr17	31999681	31999778	16197759	0	+	0.28866000000000003	[0,0.29]	chr17	1307779	8	UTR3	UTR3:EXON_MRNA	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr5	119116636	119116736	6175085	0	+	0.29	[0,0.29]	chr5	481616	3	SS5_PROX	SS5_PROX:INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr5	133956761	133956858	6843136	0	-	0.28866000000000003	[0,0.29]	chr5	523541	14	UTR3	UTR3:EXON_MRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr7	65954611	65954710	8301903	0	+	0.232323	[0,0.29]	chr7	632922	3	UTR3	UTR3:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr8	43126633	43126731	9308540	0	+	0.265306	[0,0.29]	chr8	712880	39	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.82443	3.363095	3.90176	0.0180803	0.00977224	0.0920398	0.0611259
chr11	2372637	2372693	11764753	0	+	0.428571	(0.42,0.455]	chr11	900113	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199550.1	ENST00000362680.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	2	31	2	2.7523	3.3630050000000002	3.97371	0.0153283	6.07552e-5	0.0828908	0.00121305
chr6	36914623	36914693	7135652	0	+	0.528571	(0.49,0.53]	chr6	549786	2	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	2.32512	3.36252	4.39992	0.00306772	8.12059e-8	0.0272156	4.6844e-6
chr20	50893347	50893444	18006316	0	-	0.474227	(0.455,0.49]	chr20	1526243	20	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.08503	3.362405	4.63978	0.0158994	6.94032e-4	0.0856643	0.00876781
chr19	58547443	58547511	17413316	0	+	0.544118	(0.53,0.59]	chr19	1451186	2	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597618.5:ENST00000597423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	2.54082	3.362275	4.18373	0.00100675	1.85867e-5	0.011962800000000001	4.56627e-4
chr1	224190040	224190133	728457	0	+	0.333333	(0.33,0.36]	chr1	73579	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DEGS1	ENSG00000143753.13	ENST00000415210.5:ENST00000323699.9:ENST00000391877.3:ENST00000465848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	2.79427	3.362215	3.93016	1.77242e-4	4.79396e-8	0.0030964400000000002	2.9718e-6
chr12	14460676	14460767	12745113	0	+	0.483516	(0.455,0.49]	chr12	990777	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATF7IP	ENSG00000171681.13	ENST00000537653.5:ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000541654.1:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.85172	3.362025	3.87233	0.010864	1.08465e-4	0.0643837	0.00193256
chr15	80121711	80121765	15045239	0	+	0.444444	(0.42,0.455]	chr15	1183641	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1:ENST00000561017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	29	2	2.04415	3.36198	4.67981	0.0101476	5.38444e-4	0.0627153	0.00744072
chr4	185190618	185190713	5832348	0	-	0.410526	(0.39,0.42]	chr4	458304	6	CDS	CDS:UTR3:EXON_MRNA	CFAP97	ENSG00000164323.14	ENST00000458385.7:ENST00000514798.1:ENST00000647728.1:ENST00000296775.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.784	3.36198	3.93996	0.00841622	0.00261393	0.054565	0.0230705
chr9	92280745	92280819	10737462	0	-	0.391892	(0.39,0.42]	chr9	812376	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.784	3.36198	3.93996	0.00841622	0.00261393	0.054565	0.0230705
chrX	20150309	20150408	18985581	0	-	0.40404	(0.39,0.42]	chrX	1616690	5	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.784	3.36198	3.93996	0.00841622	0.00261393	0.054565	0.0230705
chr19	10316402	10316497	17459293	0	-	0.621053	(0.59,1]	chr19	1460720	3	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	115	2	2.80044	3.36182	3.9232	9.46564e-4	9.85469e-6	0.0113725	2.72997e-4
chr7	100098646	100098715	8949686	0	-	0.550725	(0.53,0.59]	chr7	683546	2	CDS	CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.84458	3.36171	3.87884	5.21436e-4	1.11478e-4	0.00674101	0.00213212
chr1	26780271	26780367	111015	0	+	0.552083	(0.53,0.59]	chr1	13354	14	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr14	69458427	69458493	14373455	0	+	0.530303	(0.53,0.59]	chr14	1123179	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A9	ENSG00000029364.12	ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1:ENST00000554023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr16	23667046	23667144	15595101	0	+	0.540816	(0.53,0.59]	chr16	1236695	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000566053.5:ENST00000563614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr7	107959402	107959480	8987589	0	-	0.551282	(0.53,0.59]	chr7	687649	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr7	139571730	139571830	9103376	0	-	0.56	(0.53,0.59]	chr7	694628	103	UTR3	UTR3:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr7	152152787	152152870	9135067	0	-	0.542169	(0.53,0.59]	chr7	698335	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000684069.1:ENST00000485241.2:ENST00000684330.1:ENST00000683886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr8	47934027	47934090	9817161	0	-	0.539683	(0.53,0.59]	chr8	742861	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	2.89916	3.361615	3.82407	0.0179666	0.00890406	0.0918323	0.0565003
chr12	51059632	51059731	12876167	0	+	0.515152	(0.49,0.53]	chr12	1000594	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000550929.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	3	44	2	2.99849	3.361545	3.7246	0.00630123	1.36405e-5	0.0445415	3.54667e-4
chr11	118409191	118409285	12157966	0	+	0.351064	(0.33,0.36]	chr11	936964	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000527186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.07736	3.361445	4.64553	0.0442037	6.69086e-4	0.172163	0.00820018
chr12	100339954	100340052	13039823	0	+	0.336735	(0.33,0.36]	chr12	1015444	9	UTR3	UTR3:EXON_MRNA	SCYL2	ENSG00000136021.19	ENST00000360820.7:ENST00000635101.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.07736	3.361445	4.64553	0.0442037	6.69086e-4	0.172163	0.00820018
chrX	78125929	78126028	18747151	0	+	0.484848	(0.455,0.49]	chrX	1599855	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	364	2	3.22271	3.361365	3.50002	9.57803e-9	5.71705e-10	7.48399e-7	7.02021e-8
chr7	5528280	5528364	8659482	0	-	0.619048	(0.59,1]	chr7	662116	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	898	2	2.79515	3.3612450000000003	3.92734	3.31173e-6	1.57507e-9	1.20784e-4	1.57815e-7
chr2	26135215	26135312	1685702	0	+	0.309278	(0.29,0.33]	chr2	164739	3	UTR3	UTR3:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	90	2	3.1797	3.3611	3.5425	6.00239e-6	1.34723e-7	1.97688e-4	7.23893e-6
chr2	73958811	73958886	1889993	0	+	0.52	(0.49,0.53]	chr2	179043	2	UTR3	UTR3:EXON_MRNA	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	3.23006	3.3607449999999996	3.49143	0.00253719	6.13943e-5	0.0233955	0.00122382
chr12	110719860	110719951	13539213	0	-	0.32967	(0.29,0.33]	chr12	1065101	3	UTR3	UTR3:EXON_MRNA	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	2.45373	3.360655	4.26758	0.0156405	1.78487e-9	0.084273700000000007	1.7523e-7
chr1	77129390	77129483	309377	0	+	0.376344	(0.36,0.39]	chr1	31621	4	EXON_PSEUDO	EXON_PSEUDO	RP4-706A16.3	ENSG00000226084.5	ENST00000471722.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	55	2	3.00558	3.36055	3.71552	2.21724e-4	2.15236e-6	0.00341828	8.40005e-5
chr14	55065720	55065819	14298058	0	+	0.373737	(0.36,0.39]	chr14	1117553	12	UTR3	UTR3:EXON_MRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.02397	3.36054	3.69711	0.00674398	1.63058e-5	0.0461258	4.12921e-4
chr4	39456405	39456471	5383247	0	-	0.439394	(0.42,0.455]	chr4	431465	1	CDS	CDS:EXON_MRNA:INTRON	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000644328.1:ENST00000503040.5:ENST00000511075.5:ENST00000437992.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	293	2	3.07602	3.3605150000000004	3.64501	2.66752e-8	4.45577e-9	1.80358e-6	4.18288e-7
chr17	59683624	59683690	16295484	0	+	0.378788	(0.36,0.39]	chr17	1321742	1	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.85489	3.3604600000000002	4.86603	0.0350721	1.68962e-4	0.141601	0.00297945
chr19	58548485	58548538	17413336	0	+	0.584906	(0.53,0.59]	chr19	1451202	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597172.5:ENST00000601150.5:ENST00000597995.1:ENST00000597136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	102	2	2.49112	3.36046	4.2298	0.00129901	3.14318e-8	0.0142093	2.0761e-6
chr11	87318136	87318235	12054838	0	+	0.40404	(0.39,0.42]	chr11	929320	1	CDS	CDS:EXON_MRNA	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000531643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	57	2	3.05461	3.3604	3.66619	8.55091e-4	2.5272e-6	0.0105173	8.75392e-5
chr1	226361362	226361459	1533014	0	-	0.57732000000000006	(0.53,0.59]	chr1	153416	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000491816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	75	2	2.45052	3.36034	4.27016	0.00355092	2.78714e-7	0.0300049	1.34066e-5
chr1	65609946	65610026	253406	0	+	0.4125	(0.39,0.42]	chr1	28855	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.95786	3.360175	3.76249	0.00138212	1.04037e-5	0.0149186	2.85665e-4
chr11	14518996	14519041	12282209	0	-	0.444444	(0.42,0.455]	chr11	949737	1	CDS	CDS:UTR5:EXON_MRNA	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000531156.5:ENST00000526443.5:ENST00000533068.5:ENST00000532256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	3.2972	3.36015	3.4231	0.00112541	1.93851e-4	0.0128481	0.00307904
chr8	47974800	47974881	9316277	0	+	0.419753	(0.39,0.42]	chr8	713588	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000518382.1:ENST00000521261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.27012	3.359935	4.44975	0.00945558	2.67778e-6	0.0594007	9.19863e-5
chr3	75214721	75214812	3557897	0	+	0.461538	(0.455,0.49]	chr3	309115	2	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:PRIMIRNA:INTRON	MIR4444-2:RP11-642N14.4:HNRNPA3P6	ENSG00000266780.1:ENSG00000287398.1:ENSG00000213300.5	ENST00000584390.1:ENST00000666034.1:ENST00000472163.1	miRNA	lncRNA	miRNA:lncRNA:processed_pseudogene	lncRNA:processed_pseudogene:primary_miRNA	2	21	2	1.95898	3.35973	4.76048	0.047107	3.99985e-4	0.172269	0.00588767
chr2	144398717	144398812	2929339	0	-	0.431579	(0.42,0.455]	chr2	259644	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	2.68545	3.3596399999999997	4.03383	0.00135767	4.24324e-5	0.0146849	8.98949e-4
chr19	19527280	19527356	17264129	0	+	0.592105	(0.59,1]	chr19	1426413	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000428459.6:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	113	2	2.9981	3.359295	3.72049	3.68402e-4	3.21194e-5	0.00553314	7.12253e-4
chr7	130165098	130165194	9063131	0	-	0.375	(0.36,0.39]	chr7	692134	5	UTR3	UTR3:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.06832	3.35921	4.6501	0.0122123	5.80078e-7	0.0702898	2.50873e-5
chr1	54205294	54205352	200354	0	+	0.465517	(0.455,0.49]	chr1	25580	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.35515	3.35911	4.36307	0.0140117	0.00218641	0.0767536	0.0208941
chr19	5277833	5277933	17209950	0	+	0.49	(0.455,0.49]	chr19	1415256	2	EXON_PSEUDO	EXON_PSEUDO	RPL32P34	ENSG00000239524.2	ENST00000486380.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	21	2	2.35515	3.35911	4.36307	0.0140117	0.00218641	0.0767536	0.0208941
chr2	75656372	75656471	1894572	0	+	0.464646	(0.455,0.49]	chr2	179770	12	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.35515	3.35911	4.36307	0.0140117	0.00218641	0.0767536	0.0208941
chr4	145624158	145624256	5707650	0	-	0.397959	(0.39,0.42]	chr4	451934	1	EXON_PSEUDO	EXON_PSEUDO	NCOA4P3	ENSG00000249245.2	ENST00000513203.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.88836	3.359045	3.82973	0.0102432	1.3728e-4	0.062872	0.00232973
chr6	75241233	75241265	7800203	0	-	0.53125	(0.53,0.59]	chr6	597629	1	CDS	CDS:EXON_MRNA:INTRON	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6:ENST00000377978.3:ENST00000481061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.56002	3.3590350000000004	4.15805	0.00680952	0.00634904	0.0468196	0.0446708
chr22	40825583	40825678	18517879	0	-	0.368421	(0.36,0.39]	chr22	1580937	12	UTR3	UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.413	3.3590150000000003	4.30503	0.00106686	7.76959e-6	0.0118238	2.43892e-4
chr16	24214914	24215013	15599236	0	+	0.424242	(0.42,0.455]	chr16	1236920	2	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	9	99	2	2.7642	3.35894	3.95368	1.43049e-4	4.43674e-8	0.00262236	2.77612e-6
chr12	53383432	53383527	12885899	0	+	0.557895	(0.53,0.59]	chr12	1002309	15	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.90978	3.35892	3.80806	0.00857883	1.65022e-4	0.0552386	0.00269147
chr4	1696201	1696276	5279977	0	-	0.453333	(0.42,0.455]	chr4	424992	1	CDS	CDS:EXON_MRNA	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.57051	3.3587800000000003	4.14705	0.0265466	2.1071e-5	0.120071	5.06044e-4
chr4	79983877	79983970	5484296	0	-	0.451613	(0.42,0.455]	chr4	439558	1	CDS	CDS:UTR3:EXON_MRNA	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.57051	3.3587800000000003	4.14705	0.0265466	2.1071e-5	0.120071	5.06044e-4
chr9	137241910	137241965	10515392	0	+	0.709091	(0.59,1]	chr9	797247	1	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	71	2	2.85681	3.3587049999999996	3.8606	0.00235278	2.2997e-4	0.0222204	0.00352524
chr21	33576847	33576938	18101453	0	+	0.362637	(0.36,0.39]	chr21	1534606	4	UTR3	UTR3:EXON_MRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000478183.5:ENST00000465834.5:ENST00000491794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	3.18642	3.35868	3.53094	0.0305588	0.00359152	0.130016	0.0302391
chr1	230236013	230236112	749353	0	+	0.626263	(0.59,1]	chr1	76019	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.61074	3.35865	4.10656	0.025486	6.70075e-5	0.117089	0.00130461
chr5	154815947	154816045	6315030	0	+	0.530612	(0.53,0.59]	chr5	492515	20	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.71318	3.358555	4.00393	0.0108084	0.00340745	0.064368	0.0283456
chr1	225403207	225403302	1528067	0	-	0.378947	(0.36,0.39]	chr1	152775	19	UTR3	UTR3:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000441022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	3.27479	3.3584300000000002	3.44207	5.51752e-5	1.3128e-5	0.00122694	3.44837e-4
chr1	54239077	54239177	1028250	0	-	0.41	(0.39,0.42]	chr1	106777	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000371320.8:ENST00000426150.5:ENST00000444533.5:ENST00000420121.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.3855	3.3583999999999996	4.3313	0.0049615	0.00209984	0.0368419	0.0204266
chr21	29062185	29062243	18201999	0	-	0.431034	(0.42,0.455]	chr21	1544722	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2:ENST00000480359.1:ENST00000475205.1:ENST00000431234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	115	2	2.0038	3.35837	4.71294	0.00379067	2.51632e-10	0.0317138	3.07819e-8
chr2	208243515	208243604	3142499	0	-	0.41573	(0.39,0.42]	chr2	277706	2	CDS	CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	3.0503	3.358245	3.66619	0.00570576	2.5272e-6	0.0424438	8.75392e-5
chr9	83971958	83972035	10712905	0	-	0.584416	(0.53,0.59]	chr9	810502	2	CDS	CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5	protein_coding	protein_coding	protein_coding	protein_coding	14	168	2	2.8185	3.357815	3.89713	9.88883e-6	2.36542e-8	2.73882e-4	1.777e-6
chr1	205716889	205716988	1462024	0	-	0.414141	(0.39,0.42]	chr1	147460	42	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	10	93	2	3.13428	3.35779	3.5813	4.38282e-6	1.08775e-6	1.39274e-4	4.73591e-5
chr6	160064465	160064531	7528532	0	+	0.560606	(0.53,0.59]	chr6	574854	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.7898	3.357765	3.92573	0.0128364	8.62301e-5	0.0719798	0.00160749
chr1	45012213	45012265	174312	0	+	0.461538	(0.455,0.49]	chr1	22528	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000650713.1:ENST00000651476.1:ENST00000463092.5:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000461035.5:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.35214	3.3576049999999995	4.36307	0.0455621	0.00218641	0.168044	0.0208941
chr1	117934472	117934542	428508	0	+	0.457143	(0.455,0.49]	chr1	42300	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WDR3	ENSG00000065183.16	ENST00000369441.7:ENST00000487202.5:ENST00000349139.6:ENST00000471680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.35214	3.3576049999999995	4.36307	0.0455621	0.00218641	0.168044	0.0208941
chr1	206648667	206648766	682554	0	+	0.474747	(0.455,0.49]	chr1	68978	14	CDS	CDS:UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.35214	3.3576049999999995	4.36307	0.0455621	0.00218641	0.168044	0.0208941
chr16	84977923	84978005	16063297	0	-	0.47561	(0.455,0.49]	chr16	1290331	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9:ENST00000564466.5:ENST00000569377.1:ENST00000566909.1:ENST00000569488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.35214	3.3576049999999995	4.36307	0.0455621	0.00218641	0.168044	0.0208941
chr19	39409055	39409144	17326047	0	+	0.483146	(0.455,0.49]	chr19	1434821	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFP36	ENSG00000128016.7	ENST00000594442.2:ENST00000597629.3:ENST00000652583.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.35214	3.3576049999999995	4.36307	0.0455621	0.00218641	0.168044	0.0208941
chr7	135630406	135630470	8553155	0	+	0.46875	(0.455,0.49]	chr7	652870	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.35214	3.3576049999999995	4.36307	0.0455621	0.00218641	0.168044	0.0208941
chr15	58987986	58988068	14958673	0	+	0.487805	(0.455,0.49]	chr15	1175577	5	UTR5	UTR5:EXON_MRNA:INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1:ENST00000348370.9:ENST00000559160.1:ENST00000559209.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.9967	3.3573399999999998	3.71798	0.0202679	0.00650423	0.0984041	0.0454205
chr17	49298412	49298512	16580485	0	-	0.46	(0.455,0.49]	chr17	1362316	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ZNF652	ENSG00000198740.9	ENST00000430262.3:ENST00000508237.5:ENST00000362063.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.9967	3.3573399999999998	3.71798	0.0202679	0.00650423	0.0984041	0.0454205
chr4	870125	870210	5276284	0	-	0.470588	(0.455,0.49]	chr4	424388	3	INTRON	INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000618573.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.9967	3.3573399999999998	3.71798	0.0202679	0.00650423	0.0984041	0.0454205
chr10	74119666	74119766	11117664	0	+	0.4	(0.39,0.42]	chr10	846311	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.38313	3.357215	4.3313	0.0128066	0.00209984	0.0725185	0.0204266
chr11	34099367	34099465	11905488	0	+	0.357143	(0.33,0.36]	chr11	909587	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000529307.1:ENST00000533657.5:ENST00000531668.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	2.78785	3.356945	3.92604	0.00115378	3.08307e-7	0.0130851	1.46344e-5
chr11	27581679	27581773	11876584	0	+	0.489362	(0.455,0.49]	chr11	907991	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	BDNF-AS:RP11-587D21.1	ENSG00000245573.9:ENSG00000240036.4	ENST00000650864.1:ENST00000652063.1:ENST00000530686.6:ENST00000651944.1:ENST00000652663.1:ENST00000651193.1:ENST00000650954.2:ENST00000652516.1:ENST00000502161.7:ENST00000651756.1:ENST00000652325.1:ENST00000650880.1:ENST00000652138.1:ENST00000650862.1:ENST00000651437.1:ENST00000652594.1:ENST00000651103.1:ENST00000651905.1:ENST00000651238.1:ENST00000501663.3:ENST00000652754.1:ENST00000651742.1:ENST00000651796.1:ENST00000651707.1:ENST00000650815.1:ENST00000651635.1:ENST00000651152.1:ENST00000650855.1:ENST00000651990.1:ENST00000651218.1:ENST00000652212.1:ENST00000651252.2:ENST00000532965.5:ENST00000652244.1:ENST00000500662.7:ENST00000499568.3:ENST00000651997.1:ENST00000651592.1:ENST00000499008.8:ENST00000652574.1:ENST00000501176.7:ENST00000651926.2:ENST00000651264.1:ENST00000651026.1:ENST00000651123.1:ENST00000652133.1:ENST00000650703.1:ENST00000476147.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr14	22952611	22952683	14528076	0	-	0.458333	(0.455,0.49]	chr14	1138231	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HAUS4:RP11-298I3.5	ENSG00000092036.19:ENSG00000259132.1	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000554446.5:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555074.1:ENST00000555986.5:ENST00000555040.5:ENST00000556915.5:ENST00000554349.5:ENST00000553794.5:ENST00000554373.5:ENST00000554651.5:ENST00000554516.5:ENST00000557591.5:ENST00000553420.1:ENST00000554406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr16	2089262	2089355	15824217	0	-	0.473118	(0.455,0.49]	chr16	1262016	7	UTR3	UTR3:EXON_MRNA	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr16	69139824	69139914	15721578	0	+	0.488889	(0.455,0.49]	chr16	1251809	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP4	ENSG00000141076.18	ENST00000563299.5:ENST00000562237.5:ENST00000567460.5:ENST00000566227.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567235.6:ENST00000568448.1:ENST00000567015.5:ENST00000569014.5:ENST00000564408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr2	15167235	15167323	2526114	0	-	0.488636	(0.455,0.49]	chr2	227274	2	CDS	CDS:UTR3:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000417461.5:ENST00000281513.10:ENST00000442506.5:ENST00000433283.5:ENST00000485694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr2	30156651	30156751	1706463	0	+	0.47	(0.455,0.49]	chr2	167527	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	YPEL5	ENSG00000119801.13	ENST00000379520.7:ENST00000379519.7:ENST00000490211.6:ENST00000261353.9:ENST00000402003.7:ENST00000402708.5:ENST00000470120.5:ENST00000492439.1:ENST00000495673.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr6	34858412	34858509	7126343	0	+	0.463918	(0.455,0.49]	chr6	548456	4	CDS	CDS:EXON_MRNA	UHRF1BP1	ENSG00000065060.17	ENST00000452449.6:ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chr7	150331965	150332059	8614709	0	+	0.478723	(0.455,0.49]	chr7	657695	10	UTR3	UTR3:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chrX	141908389	141908475	18883550	0	+	0.488372	(0.455,0.49]	chrX	1608999	2	CDS	CDS:EXON_MRNA	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.69344	3.35692	4.0204	0.0176068	0.00736097	0.0925619	0.0490627
chrX	16852045	16852122	18971757	0	-	0.480519	(0.455,0.49]	chrX	1615444	1	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5:ENST00000481586.1:ENST00000444437.5:ENST00000416035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	3.24977	3.35683	3.46389	9.14164e-4	4.77546e-5	0.0110519	9.90649e-4
chr11	4093021	4093115	11774004	0	+	0.574468	(0.53,0.59]	chr11	900920	14	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.16037	3.356555	4.55274	0.0254312	0.00167999	0.117089	0.0164993
chr20	47220257	47220324	17993213	0	-	0.567164	(0.53,0.59]	chr20	1524940	1	CDS	CDS:EXON_MRNA:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.16037	3.356555	4.55274	0.0254312	0.00167999	0.117089	0.0164993
chr22	24555998	24556071	18314085	0	+	0.561644	(0.53,0.59]	chr22	1556243	1	UTR5	UTR5:EXON_MRNA	SNRPD3:KB-1995A5.6	ENSG00000100028.12:ENSG00000286070.2	ENST00000468770.1:ENST00000215829.8:ENST00000652248.1:ENST00000402849.5:ENST00000404603.5:ENST00000439775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.16037	3.356555	4.55274	0.0254312	0.00167999	0.117089	0.0164993
chr11	123060729	123060798	12637000	0	-	0.449275	(0.42,0.455]	chr11	980725	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000227378.7:ENST00000526110.5:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000534567.5:ENST00000527387.5:ENST00000532182.5:ENST00000524590.5:ENST00000530391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	91	2	3.05307	3.356495	3.65992	1.8692e-5	5.2291e-7	4.59183e-4	2.57218e-5
chr10	103302979	103303072	11672358	0	-	0.301075	(0.29,0.33]	chr10	890202	3	UTR3	UTR3:EXON_MRNA	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.63813	3.356415	4.0747	0.00803229	0.00577533	0.0528968	0.0417823
chr4	26433363	26433461	4766704	0	+	0.306122	(0.29,0.33]	chr4	394281	25	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.63813	3.356415	4.0747	0.00803229	0.00577533	0.0528968	0.0417823
chr11	20383493	20383589	11842609	0	+	0.552083	(0.53,0.59]	chr11	906684	4	UTR3	UTR3:EXON_MRNA	HTATIP2	ENSG00000109854.14	ENST00000451739.7:ENST00000419348.6:ENST00000531058.1:ENST00000533914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.54844	3.356135	4.16383	0.00663226	0.00659193	0.0461575	0.0454205
chr2	45408316	45408416	2626629	0	-	0.41	(0.39,0.42]	chr2	236528	148	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000490133.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	3.19588	3.3561199999999998	3.51636	0.00321212	6.99837e-4	0.0280721	0.00846751
chr5	172768570	172768665	6984122	0	-	0.410526	(0.39,0.42]	chr5	533735	6	UTR3	UTR3:EXON_MRNA	DUSP1	ENSG00000120129.6	ENST00000239223.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.19588	3.3561199999999998	3.51636	0.00321212	6.99837e-4	0.0280721	0.00846751
chr2	61888407	61888507	2691544	0	-	0.73	(0.59,1]	chr2	240599	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	136	2	3.12435	3.35604	3.58773	1.94602e-4	1.26301e-5	0.00332928	3.33238e-4
chr11	108138897	108138981	12125039	0	+	0.47619	(0.455,0.49]	chr11	933475	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACAT1	ENSG00000075239.14	ENST00000672284.1:ENST00000672580.1:ENST00000265838.9:ENST00000672367.1:ENST00000672907.1:ENST00000673531.1:ENST00000672031.1:ENST00000672354.1:ENST00000531813.5:ENST00000672008.1:ENST00000671707.1:ENST00000673000.1:ENST00000528370.1:ENST00000534773.1:ENST00000532792.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.30139	3.3559	4.41041	0.0530131	0.00218771	0.195536	0.0202707
chr12	53253127	53253223	12885407	0	+	0.458333	(0.455,0.49]	chr12	1002106	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MFSD5	ENSG00000182544.9	ENST00000534842.1:ENST00000551660.2:ENST00000329548.5:ENST00000552097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.30139	3.3559	4.41041	0.0530131	0.00218771	0.195536	0.0202707
chr21	43762207	43762307	18136220	0	+	0.46	(0.455,0.49]	chr21	1538360	63	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.30139	3.3559	4.41041	0.0530131	0.00218771	0.195536	0.0202707
chr21	44866839	44866937	18277591	0	-	0.469388	(0.455,0.49]	chr21	1550285	8	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.30139	3.3559	4.41041	0.0530131	0.00218771	0.195536	0.0202707
chr6	52505598	52505670	7736897	0	-	0.472222	(0.455,0.49]	chr6	593782	1	CDS	CDS:EXON_MRNA	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.30139	3.3559	4.41041	0.0530131	0.00218771	0.195536	0.0202707
chr17	75182896	75182959	16682649	0	-	0.666667	(0.59,1]	chr17	1373002	2	UTR5	UTR5:EXON_MRNA	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7	protein_coding	protein_coding	protein_coding	protein_coding	7	144	2	3.0009	3.3558700000000004	3.71084	5.92146e-5	3.89573e-5	0.00118866	9.32836e-4
chr22	21621964	21622063	18303181	0	+	0.414141	(0.39,0.42]	chr22	1554195	4	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	72	2	2.9359	3.355865	3.77583	1.95323e-5	1.05659e-5	4.76369e-4	3.15727e-4
chr17	78993829	78993920	16698195	0	-	0.659341	(0.59,1]	chr17	1376274	3	CDS	CDS:EXON_MRNA:INTRON	CANT1	ENSG00000171302.17	ENST00000392446.10:ENST00000302345.6:ENST00000620915.4:ENST00000592228.1:ENST00000591773.5:ENST00000588096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.59461	3.355665	4.11672	0.0259455	0.0222273	0.117079	0.105595
chr19	10328641	10328738	17459425	0	-	0.670103	(0.59,1]	chr19	1460758	1	CDS	CDS:UTR3:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.59461	3.355665	4.11672	0.0259455	0.0222273	0.117079	0.105595
chr14	100342397	100342484	14788583	0	-	0.586207	(0.53,0.59]	chr14	1158706	2	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000557614.1:ENST00000554601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	75	2	3.1234	3.35548	3.58756	0.00390623	1.12303e-6	0.0322851	4.41124e-5
chr17	41690933	41691029	16226845	0	+	0.416667	(0.39,0.42]	chr17	1312506	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	160	2	3.02697	3.355385	3.6838	5.43783e-6	3.84194e-9	1.81467e-4	3.39055e-7
chr1	183477489	183477589	597229	0	+	0.31	(0.29,0.33]	chr1	61990	32	INTRON	INTRON	SMG7	ENSG00000116698.21	ENST00000440812.7:ENST00000367537.7:ENST00000508461.5:ENST00000507691.6:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000638826.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.45373	3.355165	4.2566	0.0156405	0.00303129	0.084273700000000007	0.0257942
chr8	94509771	94509855	9960196	0	-	0.297619	(0.29,0.33]	chr8	751275	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.45373	3.355165	4.2566	0.0156405	0.00303129	0.084273700000000007	0.0257942
chr17	44374997	44375054	16558016	0	-	0.701754	(0.59,1]	chr17	1359422	1	CDS	CDS:EXON_MRNA:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	27	2	2.69477	3.3551100000000003	4.01545	0.0251889	0.020208	0.114168	0.0978331
chr3	4983402	4983497	3277644	0	+	0.589474	(0.53,0.59]	chr3	288720	7	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	16	209	2	3.08947	3.3549800000000003	3.62049	6.8295e-6	6.73284e-9	2.21368e-4	5.49723e-7
chr1	149843264	149843362	464822	0	+	0.704082	(0.59,1]	chr1	46801	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	H2BC19P	ENSG00000220323.4	ENST00000608318.2:ENST00000369385.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	56	2	2.9228	3.35478	3.78676	0.00981698	3.60514e-4	0.0612992	0.00544284
chr8	73981154	73981245	9406604	0	+	0.32967	(0.29,0.33]	chr8	718134	1	CDS	CDS:UTR3:EXON_MRNA	TMEM70	ENSG00000175606.11	ENST00000312184.6:ENST00000416961.6:ENST00000517439.1:ENST00000519551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	3.08261	3.35472	3.62683	0.0048227	6.18968e-4	0.0365653	0.00822794
chr1	630493	630588	477	0	+	0.410526	(0.39,0.42]	chr1	105	10	EXON_PSEUDO	EXON_PSEUDO	MTND2P28	ENSG00000225630.1	ENST00000457540.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	15	2	2.37759	3.354445	4.3313	0.0428865	0.00209984	0.161091	0.0204266
chr1	205790361	205790459	1462467	0	-	0.408163	(0.39,0.42]	chr1	147533	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.37759	3.354445	4.3313	0.0428865	0.00209984	0.161091	0.0204266
chr12	49019943	49020039	13323151	0	-	0.416667	(0.39,0.42]	chr12	1045401	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-386G11.12:KMT2D	ENSG00000288710.1:ENSG00000167548.17	ENST00000683988.1:ENST00000526209.2:ENST00000301067.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.37759	3.354445	4.3313	0.0428865	0.00209984	0.161091	0.0204266
chr7	92614742	92614841	8924987	0	-	0.494949	(0.49,0.53]	chr7	681136	100	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	89	2	2.98424	3.35442	3.7246	1.36405e-5	6.94274e-6	3.54667e-4	2.24818e-4
chr1	183554093	183554193	598038	0	+	0.38	(0.36,0.39]	chr1	62141	10	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	122	2	2.87583	3.3544	3.83297	8.70639e-5	3.48641e-9	0.00177086	3.12284e-7
chr16	16252031	16252100	15569003	0	+	0.521739	(0.49,0.53]	chr16	1232945	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1:ENST00000572830.5:ENST00000570519.5:ENST00000576427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.38097	3.35433	4.32769	0.0425419	6.54988e-6	0.167547	1.94116e-4
chr1	180824847	180824943	586005	0	+	0.40625	(0.39,0.42]	chr1	60697	2	CDS	CDS:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.62131	3.354165	4.08702	0.00609677	3.01232e-5	0.0439136	6.78876e-4
chr2	26215113	26215175	2565893	0	-	0.419355	(0.39,0.42]	chr2	230603	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.62131	3.354165	4.08702	0.00609677	3.01232e-5	0.0439136	6.78876e-4
chr13	95115921	95116001	14110334	0	-	0.3875	(0.36,0.39]	chr13	1104371	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	2.38564	3.354145	4.32265	0.0476159	6.3224e-6	0.17993	1.88366e-4
chr15	90910846	90910903	15103652	0	+	0.526316	(0.49,0.53]	chr15	1188727	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000557865.5:ENST00000560616.5:ENST00000558171.1:ENST00000561240.1:ENST00000560505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	3.11892	3.3540900000000002	3.58926	0.00398244	3.32125e-5	0.0322851	7.33555e-4
chr1	169386996	169387082	528393	0	+	0.383721	(0.36,0.39]	chr1	56755	1	CDS	CDS:EXON_MRNA	BLZF1	ENSG00000117475.14	ENST00000329281.6:ENST00000367808.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr1	238499228	238499328	782710	0	+	0.37	(0.36,0.39]	chr1	78724	67	INTRON	INTRON	RP11-177F15.1	ENSG00000231877.1	ENST00000442726.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr1	246851057	246851153	1600641	0	-	0.385417	(0.36,0.39]	chr1	158903	16	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5:ENST00000483900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr2	102366541	102366639	1962741	0	+	0.377551	(0.36,0.39]	chr2	186550	35	INTRON	INTRON	IL18R1	ENSG00000115604.12	ENST00000410040.5:ENST00000233957.7:ENST00000409599.5:ENST00000677287.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr3	39093873	39093969	3422791	0	+	0.364583	(0.36,0.39]	chr3	297710	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WDR48	ENSG00000114742.14	ENST00000302313.10:ENST00000413099.6:ENST00000420940.6:ENST00000466405.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr3	193615694	193615770	3982037	0	+	0.368421	(0.36,0.39]	chr3	335012	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	OPA1	ENSG00000198836.11	ENST00000361828.7:ENST00000361715.6:ENST00000361150.6:ENST00000361908.8:ENST00000361510.8:ENST00000642445.1:ENST00000646277.1:ENST00000644595.1:ENST00000643737.1:ENST00000644841.1:ENST00000392436.7:ENST00000646085.1:ENST00000643329.1:ENST00000646793.1:ENST00000392437.6:ENST00000419435.5:ENST00000645553.1:ENST00000642593.1:ENST00000644959.1:ENST00000642289.1:ENST00000646699.1:ENST00000644629.1:ENST00000434811.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr5	96979708	96979798	6118366	0	+	0.388889	(0.36,0.39]	chr5	478776	6	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.38564	3.354005	4.32237	0.0476159	0.00273222	0.17993	0.0237575
chr9	92285721	92285815	10737513	0	-	0.425532	(0.42,0.455]	chr9	812382	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	2.61136	3.3539849999999998	4.09661	3.33599e-4	2.79795e-5	0.00472923	7.07527e-4
chr19	12922747	12922847	17472049	0	-	0.66	(0.59,1]	chr19	1463324	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	1.96394	3.35386	4.74378	0.0453144	0.00312942	0.174798	0.0264364
chr9	133020080	133020179	10502742	0	+	0.535354	(0.53,0.59]	chr9	794052	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P5	ENSG00000196205.8	ENST00000436459.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	220	2	3.28204	3.3537049999999997	3.42537	2.36217e-7	6.59497e-8	1.16797e-5	4.33113e-6
chr1	148170861	148170961	457136	0	+	0.4	(0.39,0.42]	chr1	45544	64	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.55844	3.35365	4.14886	0.0263695	0.00415881	0.117164	0.0325842
chr4	102690595	102690683	5563172	0	-	0.397727	(0.39,0.42]	chr4	444288	1	CDS	CDS:EXON_MRNA	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.55844	3.35365	4.14886	0.0263695	0.00415881	0.117164	0.0325842
chr4	138232266	138232324	5665688	0	-	0.396552	(0.39,0.42]	chr4	450242	1	CDS	CDS:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.55844	3.35365	4.14886	0.0263695	0.00415881	0.117164	0.0325842
chr5	55343392	55343455	5973340	0	+	0.412698	(0.39,0.42]	chr5	468297	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.55844	3.35365	4.14886	0.0263695	0.00415881	0.117164	0.0325842
chr6	122432120	122432220	7364675	0	+	0.41	(0.39,0.42]	chr6	565429	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HSF2	ENSG00000025156.13	ENST00000452194.5:ENST00000368455.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.55844	3.35365	4.14886	0.0263695	0.00415881	0.117164	0.0325842
chrX	101634058	101634112	19151869	0	-	0.407407	(0.39,0.42]	chrX	1628735	2	EXON_SMALL	EXON_SMALL	RNU6-30P	ENSG00000207291.1	ENST00000384561.1	snRNA	snRNA	snRNA	snRNA	1	15	2	2.55844	3.35365	4.14886	0.0263695	0.00415881	0.117164	0.0325842
chrX	120437182	120437281	19196131	0	-	0.272727	[0,0.29]	chrX	1631971	8	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.79116	3.353435	3.91571	0.00287618	1.5798e-4	0.0247002	0.00285004
chr4	151102873	151102973	5165581	0	+	0.4	(0.39,0.42]	chr4	417320	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	236	2	3.1791	3.353325	3.52755	6.63237e-8	2.65798e-9	4.34166e-6	2.4747e-7
chr11	110231382	110231479	12597170	0	-	0.412371	(0.39,0.42]	chr11	976511	21	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.74243	3.3532650000000004	3.9641	0.00369167	6.346e-5	0.030936	0.00124725
chr6	142198438	142198526	7442796	0	+	0.454545	(0.42,0.455]	chr6	569605	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9:ENST00000491881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	2.83395	3.35314	3.87233	6.25227e-4	4.86008e-6	0.00830005	1.51731e-4
chr3	33812071	33812126	3399323	0	+	0.290909	(0.29,0.33]	chr3	295651	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	25	2	1.90299	3.353105	4.80322	0.0126076	2.14303e-4	0.0719957	0.00359478
chr8	140524150	140524250	10132084	0	-	0.36	(0.33,0.36]	chr8	760954	41	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	3.18042	3.352945	3.52547	3.92606e-4	7.60232e-5	0.00539371	0.00159574
chr20	482960	483060	17871443	0	-	0.38	(0.36,0.39]	chr20	1511949	43	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	2.89836	3.352915	3.80747	1.33448e-5	1.0137e-6	3.49427e-4	4.48113e-5
chr5	73503021	73503117	6032189	0	+	0.489583	(0.455,0.49]	chr5	473086	1	CDS	CDS:EXON_MRNA	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000507081.6:ENST00000676856.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	189	2	3.1274	3.3528000000000002	3.5782	9.98639e-8	9.79345e-8	6.13922e-6	5.57809e-6
chr12	57488090	57488190	12902720	0	+	0.66	(0.59,1]	chr12	1005336	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000550449.5:ENST00000546481.1:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551431.5:ENST00000547501.5:ENST00000553162.5:ENST00000551842.5:ENST00000548714.5:ENST00000547062.5:ENST00000551892.1:ENST00000552007.5:ENST00000630803.1:ENST00000630571.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	35	2	2.25872	3.352715	4.44671	0.0193473	0.00931497	0.0969537	0.0586162
chr3	195785540	195785639	4661122	0	-	0.59596	(0.59,1]	chr3	385270	69	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.25872	3.352715	4.44671	0.0193473	0.00931497	0.0969537	0.0586162
chr14	94801199	94801287	14776642	0	-	0.5	(0.49,0.53]	chr14	1157598	5	EXON_PSEUDO	EXON_PSEUDO	RPL15P2	ENSG00000240914.1	ENST00000490252.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	38	2	2.94403	3.35251	3.76099	0.00122634	2.00194e-4	0.0130695	0.0034021
chr19	6441582	6441680	17442473	0	-	0.520408	(0.49,0.53]	chr19	1456913	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9:ENST00000593600.5:ENST00000600682.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.94403	3.35251	3.76099	0.00122634	2.00194e-4	0.0130695	0.0034021
chr12	69597215	69597275	12943528	0	+	0.433333	(0.42,0.455]	chr12	1008998	2	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000553169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	3.09173	3.35248	3.61323	1.40817e-4	2.83914e-5	0.00258348	6.46853e-4
chr4	128270325	128270424	5639348	0	-	0.30303	(0.29,0.33]	chr4	449280	12	UTR3	UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.80161	3.3524200000000004	3.90323	0.00415667	9.15815e-5	0.0325842	0.00168607
chr16	2762939	2763038	15494904	0	+	0.464646	(0.455,0.49]	chr16	1227802	15	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000630499.2:ENST00000571378.5	protein_coding	protein_coding	protein_coding	protein_coding	19	184	2	3.20683	3.3522350000000003	3.49764	9.27968e-8	8.4559e-8	5.38972e-6	5.23756e-6
chr19	38837383	38837479	17561071	0	-	0.552083	(0.53,0.59]	chr19	1475062	1	CDS	CDS:UTR3:EXON_MRNA	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	85	2	2.92364	3.352235	3.78083	4.75119e-5	9.87441e-6	9.86142e-4	2.99e-4
chr7	16646130	16646217	8148570	0	+	0.62069	(0.59,1]	chr7	622093	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	3.34171	3.3519699999999997	3.36223	0.00234977	0.00203572	0.0222173	0.0192213
chr15	90918699	90918755	15103749	0	+	0.589286	(0.53,0.59]	chr15	1188774	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000360468.7:ENST00000557865.5:ENST00000561448.5:ENST00000557990.1:ENST00000558538.5:ENST00000560926.5:ENST00000559341.5:ENST00000560880.1:ENST00000558374.5:ENST00000559558.1:ENST00000559704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.0404	3.35194	4.66348	0.0362529	0.00107799	0.148525	0.0118238
chr19	2755189	2755284	17425630	0	-	0.589474	(0.53,0.59]	chr19	1453674	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SGTA	ENSG00000104969.11	ENST00000221566.7:ENST00000678109.1:ENST00000676984.1:ENST00000677513.1:ENST00000676943.1:ENST00000679132.1:ENST00000677731.1:ENST00000679138.1:ENST00000677562.1:ENST00000678595.1:ENST00000677754.1:ENST00000676611.1:ENST00000677149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.0404	3.35194	4.66348	0.0362529	0.00107799	0.148525	0.0118238
chr3	128480222	128480321	4441112	0	-	0.555556	(0.53,0.59]	chr3	368923	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GATA2	ENSG00000179348.12	ENST00000341105.7:ENST00000430265.6:ENST00000489987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.0404	3.35194	4.66348	0.0362529	0.00107799	0.148525	0.0118238
chr2	61888589	61888671	2691546	0	-	0.695122	(0.59,1]	chr2	240600	2	UTR5	UTR5:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	7	165	2	2.94434	3.3518999999999997	3.75946	4.79444e-4	1.1997e-6	0.00677016	4.66408e-5
chr17	42842768	42842867	16230339	0	+	0.464646	(0.455,0.49]	chr17	1313600	13	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	3.32637	3.35189	3.37741	1.64563e-4	1.27402e-4	0.00269001	0.00241206
chr12	51049079	51049179	12876043	0	+	0.42	(0.39,0.42]	chr12	1000556	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000551261.5:ENST00000546992.5:ENST00000548390.5:ENST00000548401.1:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.85416	3.35142	3.84868	0.00225069	5.68075e-6	0.021386	1.72325e-4
chr2	74463258	74463358	2742903	0	-	0.52	(0.49,0.53]	chr2	244419	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1:ENST00000489655.1:ENST00000414701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.60116	3.35129	4.10142	0.0056515	8.9797e-7	0.0422191	3.64922e-5
chr2	170961662	170961749	2206462	0	+	0.471264	(0.455,0.49]	chr2	201849	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	3.34125	3.3508750000000003	3.3605	0.00147278	6.54172e-6	0.0157578	1.94116e-4
chr4	8174613	8174709	4712878	0	+	0.458333	(0.455,0.49]	chr4	390971	3	EXON_PSEUDO	EXON_PSEUDO	GMPSP1	ENSG00000250471.2	ENST00000514075.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	38	2	2.52734	3.3507050000000005	4.17407	0.00792433	1.754e-5	0.0523592	4.38078e-4
chr17	44041254	44041354	16556129	0	-	0.39	(0.36,0.39]	chr17	1358876	6	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.62565	3.3505450000000003	4.07544	0.0219469	3.61377e-5	0.103959	8.73633e-4
chr4	10442028	10442126	5312135	0	-	0.489796	(0.455,0.49]	chr4	427752	23	UTR3	UTR3:EXON_MRNA	ZNF518B	ENSG00000178163.8	ENST00000326756.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.92777	3.350475	4.77318	0.0286531	4.7888e-4	0.128685	0.00628636
chr12	6870383	6870477	12714954	0	+	0.574468	(0.53,0.59]	chr12	987157	1	UTR3	UTR3:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000535434.5:ENST00000474253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	105	2	3.06709	3.3504	3.63371	4.61614e-5	7.82822e-7	0.00106317	3.24902e-5
chr3	150552353	150552425	3807627	0	+	0.458333	(0.455,0.49]	chr3	324972	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF2A	ENSG00000144895.12	ENST00000463863.5:ENST00000487799.5:ENST00000473499.1:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	2.8878	3.350275	3.81275	0.0138827	1.42924e-4	0.0760883	0.00240945
chr9	128995416	128995514	10482726	0	+	0.55102	(0.53,0.59]	chr9	791125	2	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000495726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	3.0099	3.350275	3.69065	0.00600486	3.04331e-4	0.042887	0.00472028
chr14	20457140	20457229	14171284	0	+	0.561798	(0.53,0.59]	chr14	1109116	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1:ENST00000557365.1:ENST00000438886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	34	2	3.02054	3.350235	3.67993	0.00577011	3.22778e-4	0.0426551	0.0046122
chr6	31859881	31859945	7662780	0	-	0.546875	(0.53,0.59]	chr6	585390	2	CDS	CDS:UTR3:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	3.02054	3.350235	3.67993	0.00577011	3.22778e-4	0.0426551	0.0046122
chrX	49543436	49543496	18694809	0	+	0.533333	(0.53,0.59]	chrX	1594922	1	CDS	CDS:EXON_MRNA	GAGE12D	ENSG00000227488.2	ENST00000405679.3	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	3.02054	3.350235	3.67993	0.00577011	3.22778e-4	0.0426551	0.0046122
chr17	40818288	40818375	16540434	0	-	0.402299	(0.39,0.42]	chr17	1355161	3	UTR3	UTR3:EXON_MRNA	KRT10	ENSG00000186395.9	ENST00000269576.6:ENST00000635956.2	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	3.13927	3.35012	3.56097	6.12149e-4	9.67557e-5	0.00818575	0.00175376
chr7	139045702	139045802	9102038	0	-	0.44	(0.42,0.455]	chr7	694516	23	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.27707	3.350085	3.4231	0.00207325	0.00112541	0.0194849	0.0128481
chr11	61299841	61299939	12403880	0	-	0.5	(0.49,0.53]	chr11	960172	5	UTR3	UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	2.03636	3.350035	4.66371	0.00653228	5.91374e-7	0.0454205	2.55031e-5
chrX	49342852	49342912	18694676	0	+	0.533333	(0.53,0.59]	chrX	1594877	1	CDS	CDS:EXON_MRNA	GAGE2E	ENSG00000275113.1	ENST00000621907.1	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	3.21321	3.3500050000000003	3.4868	6.1362e-5	1.01599e-5	0.00133162	2.80762e-4
chr3	184170952	184171050	3948113	0	+	0.571429	(0.53,0.59]	chr3	331990	3	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.51602	3.349875	4.18373	0.00264912	1.85867e-5	0.024013	4.56627e-4
chr3	41239133	41239187	3432623	0	+	0.481481	(0.455,0.49]	chr3	298579	1	CDS	CDS:UTR3:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000646116.1:ENST00000644873.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000471014.2:ENST00000644501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.63872	3.349775	4.06083	0.00510378	3.56832e-5	0.0390492	7.81595e-4
chr10	74122229	74122327	11575816	0	-	0.5	(0.49,0.53]	chr10	881667	21	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	3.29825	3.349755	3.40126	0.00019429700000000001	1.73901e-5	0.00332542	4.37068e-4
chr22	44150592	44150690	18390713	0	+	0.612245	(0.59,1]	chr22	1566013	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	PARVB:RP4-671O14.6	ENSG00000188677.15:ENSG00000280434.1	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1:ENST00000624919.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	97	2	2.59234	3.34945	4.10656	0.00110395	6.70075e-5	0.0127339	0.00130461
chr3	172135245	172135344	3888265	0	+	0.363636	(0.36,0.39]	chr3	329018	13	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.45656	3.3492499999999996	4.24194	0.0100637	0.00276729	0.0624019	0.0247437
chr11	62714012	62714111	12410550	0	-	0.484848	(0.455,0.49]	chr11	961490	15	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	1.72305	3.34915	4.97525	0.0324537	1.38474e-4	0.134899	0.00254294
chr16	2708242	2708340	15494776	0	+	0.479592	(0.455,0.49]	chr16	1227755	9	UTR3	UTR3:EXON_MRNA	KCTD5	ENSG00000167977.9	ENST00000301738.9	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.72305	3.34915	4.97525	0.0324537	1.38474e-4	0.134899	0.00254294
chr5	75359239	75359310	6037153	0	+	0.549296	(0.53,0.59]	chr5	473657	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000509085.5:ENST00000511986.1:ENST00000514315.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.0289	3.34913	4.66936	0.0373899	0.00103174	0.146698	0.0121443
chr1	19077975	19078066	875613	0	-	0.461538	(0.455,0.49]	chr1	89884	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375225.7:ENST00000375224.1:ENST00000459947.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	3.13787	3.34912	3.56037	5.72551e-4	4.66183e-4	0.0078026	0.00616585
chr1	52393712	52393803	1018905	0	-	0.483516	(0.455,0.49]	chr1	105620	4	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	3.13787	3.34912	3.56037	5.72551e-4	4.66183e-4	0.0078026	0.00616585
chr1	19192187	19192282	876896	0	-	0.557895	(0.53,0.59]	chr1	90370	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.2596	3.349115	4.43863	0.0185443	0.00254763	0.0948733	0.0233955
chr5	134205938	134206038	6844205	0	-	0.34	(0.33,0.36]	chr5	523701	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2410N18.5:PPP2CA:CTD-2410N18.4	ENSG00000272772.1:ENSG00000113575.10:ENSG00000273345.5	ENST00000519718.1:ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5:ENST00000520515.5:ENST00000518409.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	6	53	2	2.53443	3.34889	4.16335	0.00171856	5.09889e-7	0.0177536	2.25036e-5
chr7	73304318	73304408	8853240	0	-	0.622222	(0.59,1]	chr7	675794	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NSUN5	ENSG00000130305.17	ENST00000438747.7:ENST00000428206.5:ENST00000471461.5:ENST00000252594.10:ENST00000310326.8:ENST00000478977.1:ENST00000455763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	26	2	2.32455	3.34889	4.37323	0.0520547	0.00990413	0.193787	0.061536
chr1	109324993	109325089	1219587	0	-	0.53125	(0.53,0.59]	chr1	118968	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	3.30344	3.3487999999999998	3.39416	0.00126006	9.28103e-6	0.013837	2.58687e-4
chr11	61789139	61789235	12405849	0	-	0.395833	(0.39,0.42]	chr11	960555	3	UTR3	UTR3:EXON_MRNA:INTRON	TMEM258	ENSG00000134825.16	ENST00000535042.1:ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	56	2	2.5823	3.34879	4.11528	0.00246531	7.73976e-7	0.0230262	3.2172e-5
chr11	118406945	118407021	12157941	0	+	0.539474	(0.53,0.59]	chr11	936957	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000534385.1:ENST00000527186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	92	2	2.74071	3.34878	3.95685	7.83491e-5	2.90242e-6	0.00148897	1.08567e-4
chr10	96521569	96521668	11640094	0	-	0.30303	(0.29,0.33]	chr10	886559	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	62	2	3.30471	3.3486450000000003	3.39258	3.75753e-5	2.88794e-6	9.03577e-4	9.76686e-5
chr3	23917959	23918031	3358542	0	+	0.680556	(0.59,1]	chr3	294131	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000643707.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	159	2	2.72084	3.34854	3.97624	5.97513e-4	1.06337e-6	0.00808684	4.21291e-5
chr3	152465180	152465280	3818530	0	+	0.28	[0,0.29]	chr3	325707	29	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	55	2	2.42712	3.3484999999999996	4.26988	8.1794e-4	2.14046e-7	0.0101664	1.07696e-5
chr1	1052786	1052882	2422	0	+	0.5	(0.49,0.53]	chr1	579	9	EXON_MRNA	EXON_MRNA:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.41364	3.34848	4.28332	0.0112538	0.00338762	0.0665375	0.0288632
chr2	61888380	61888407	2691543	0	-	0.555556	(0.53,0.59]	chr2	240598	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461370.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	2.13829	3.348445	4.5586	0.00663709	0.00161229	0.046176300000000003	0.0169168
chr2	61873056	61873112	2691377	0	-	0.446429	(0.42,0.455]	chr2	240547	2	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	93	2	2.67575	3.34824	4.02073	2.59779e-5	1.58973e-6	6.0117e-4	6.493e-5
chr12	55993702	55993801	12897160	0	+	0.535354	(0.53,0.59]	chr12	1003857	16	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	2.0271	3.34823	4.66936	0.00643061	0.00103174	0.0450905	0.0121443
chr15	61853175	61853274	15329498	0	-	0.242424	[0,0.29]	chr15	1209317	9	UTR3	UTR3:EXON_MRNA	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000560637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.40395	3.348205	4.29246	0.0210081	0.00254021	0.101116	0.0227257
chr7	32586137	32586236	8210425	0	+	0.272727	[0,0.29]	chr7	626506	22	UTR3	UTR3:EXON_MRNA	AVL9	ENSG00000105778.19	ENST00000318709.9:ENST00000409301.5:ENST00000446718.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.40395	3.348205	4.29246	0.0210081	0.00254021	0.101116	0.0227257
chr9	92032087	92032181	10735630	0	-	0.329787	(0.29,0.33]	chr9	812061	11	UTR3	UTR3:EXON_MRNA:INTRON	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.74619	3.3481199999999998	4.95005	0.0509174	9.78718e-5	0.181793	0.0019344
chr21	37202919	37203015	18115593	0	+	0.4375	(0.42,0.455]	chr21	1536145	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.63665	3.348095	4.05954	0.00617886	0.0048172	0.0439741	0.0365653
chr11	47468817	47468917	12386796	0	-	0.43	(0.42,0.455]	chr11	956932	30	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	2.5054	3.3478499999999998	4.1903	6.84962e-4	4.41719e-7	0.00876781	1.99209e-5
chr16	70565445	70565524	15730104	0	+	0.493671	(0.49,0.53]	chr16	1252995	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000563739.5:ENST00000562722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	3.33324	3.3477550000000003	3.36227	0.00162947	2.26725e-5	0.0169972	5.39086e-4
chr16	28835122	28835187	15620383	0	+	0.569231	(0.53,0.59]	chr16	1238470	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1:ENST00000562686.1:ENST00000569318.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	23	220	2	2.57056	3.34765	4.12474	5.87173e-6	1.22868e-8	1.77148e-4	1.01118e-6
chr19	15237981	15238080	17484910	0	-	0.545455	(0.53,0.59]	chr19	1465289	26	UTR3	UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	3.30943	3.347405	3.38538	0.0018255	1.18366e-4	0.0183913	0.00207204
chr10	124412071	124412171	11729411	0	-	0.41	(0.39,0.42]	chr10	895095	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	87	2	2.21434	3.34729	4.48024	4.24986e-4	3.39607e-8	0.00576904	2.44856e-6
chr10	68342054	68342148	11089766	0	+	0.297872	(0.29,0.33]	chr10	842858	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	3.21455	3.34728	3.48001	0.00283988	0.00126219	0.0245061	0.013837
chr1	54871437	54871525	1030768	0	-	0.613636	(0.59,1]	chr1	107013	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.24397	3.34694	4.44991	0.0206682	1.01141e-5	0.0997234	2.79672e-4
chr2	43918024	43918087	2623235	0	-	0.380952	(0.36,0.39]	chr2	236141	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1:ENST00000684705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	3.02397	3.346875	3.66978	0.00674398	3.25031e-4	0.0461258	0.00463603
chr5	111123804	111123864	6144675	0	+	0.366667	(0.36,0.39]	chr5	480241	1	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.02397	3.346875	3.66978	0.00674398	3.25031e-4	0.0461258	0.00463603
chr8	123183051	123183146	9588353	0	+	0.705263	(0.59,1]	chr8	727173	2	CDS	CDS:EXON_MRNA	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.24689	3.3468	4.44671	0.00931497	0.00890458	0.0586162	0.0565003
chr7	72882969	72883068	8329589	0	+	0.282828	[0,0.29]	chr7	633984	27	INTRON	INTRON	POM121	ENSG00000196313.12	ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.11932	3.34674	4.57416	0.0332641	6.75561e-4	0.137922	0.00873562
chr7	74196931	74197026	8334080	0	+	0.347368	(0.33,0.36]	chr7	634971	18	UTR3	UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	3.16759	3.34653	3.52547	7.60232e-5	2.36136e-5	0.00159574	5.58343e-4
chr10	97714596	97714695	11214348	0	+	0.707071	(0.59,1]	chr10	853210	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MARVELD1	ENSG00000155254.13	ENST00000451097.5:ENST00000434038.6:ENST00000285605.8:ENST00000421644.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.84748	3.3465249999999997	3.84557	0.0410704	0.0124539	0.163285	0.0712518
chr15	74418800	74418876	15374527	0	-	0.605263	(0.59,1]	chr15	1215200	1	CDS	CDS:UTR5:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	1	27	2	2.84748	3.3465249999999997	3.84557	0.0410704	0.0124539	0.163285	0.0712518
chr19	45693484	45693556	17354333	0	+	0.611111	(0.59,1]	chr19	1440096	2	CDS	CDS:UTR3:EXON_MRNA	QPCTL	ENSG00000011478.13	ENST00000678102.1:ENST00000677542.1:ENST00000677024.1:ENST00000012049.10:ENST00000678862.1:ENST00000366382.8:ENST00000591606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	27	2	2.84748	3.3465249999999997	3.84557	0.0410704	0.0124539	0.163285	0.0712518
chr9	91733199	91733278	10733123	0	-	0.64557	(0.59,1]	chr9	811987	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000550066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	27	2	2.84748	3.3465249999999997	3.84557	0.0410704	0.0124539	0.163285	0.0712518
chr6	31791673	31791737	7662539	0	-	0.546875	(0.53,0.59]	chr6	585320	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5:ENST00000489979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	47	2	2.37399	3.346465	4.31894	0.0126178	7.82085e-6	0.0717599	2.24148e-4
chr13	114324526	114324623	13913391	0	+	0.556701	(0.53,0.59]	chr13	1091008	7	CDS	CDS:EXON_MRNA:INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000361283.4:ENST00000646155.1:ENST00000643483.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	3.29875	3.3464549999999997	3.39416	0.00191422	0.00126006	0.018324	0.013837
chr5	140568526	140568622	6255391	0	+	0.552083	(0.53,0.59]	chr5	487697	5	UTR3	UTR3:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.29875	3.3464549999999997	3.39416	0.00191422	0.00126006	0.018324	0.013837
chr11	61350020	61350114	12404374	0	-	0.585106	(0.53,0.59]	chr11	960310	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000536452.1:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	3.30943	3.34645	3.38347	0.0018255	0.00132446	0.0183913	0.0138834
chr10	17235845	17235912	10938841	0	+	0.432836	(0.42,0.455]	chr10	833006	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	72	2	3.22871	3.34636	3.46401	1.56448e-5	1.12126e-5	4.38216e-4	3.03388e-4
chr6	87612088	87612168	7270527	0	+	0.3875	(0.36,0.39]	chr6	560485	1	CDS	CDS:EXON_MRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	3.20887	3.3461	3.48333	8.51229e-5	9.78237e-6	0.00174655	2.71468e-4
chr17	35717194	35717271	16207433	0	+	0.428571	(0.42,0.455]	chr17	1309147	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.34191	3.34589	4.34987	0.0159091	5.55486e-6	0.0854674	1.68903e-4
chr3	14943179	14943278	4050028	0	-	0.363636	(0.36,0.39]	chr3	340108	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	6	28	2	1.86118	3.34585	4.83052	0.0121414	3.15227e-4	0.0699297	0.00452711
chr16	173655	173710	15480739	0	+	0.563636	(0.53,0.59]	chr16	1224200	2	UTR3	UTR3:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	104	2	2.38627	3.34574	4.30521	0.00217924	1.63381e-8	0.0208941	1.18357e-6
chr1	23081445	23081509	97769	0	+	0.46875	(0.455,0.49]	chr1	11302	1	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.69053	3.3456099999999998	4.00069	0.0182983	5.13615e-5	0.0925808	0.00104999
chr1	202741633	202741722	1451853	0	-	0.460674	(0.455,0.49]	chr1	145810	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.69053	3.3456099999999998	4.00069	0.0182983	5.13615e-5	0.0925808	0.00104999
chr3	61742454	61742547	4232425	0	-	0.473118	(0.455,0.49]	chr3	356045	1	EXON_PSEUDO	EXON_PSEUDO	RPL10AP6	ENSG00000226360.5	ENST00000472730.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	31	2	2.69053	3.3456099999999998	4.00069	0.0182983	5.13615e-5	0.0925808	0.00104999
chr7	76302712	76302812	8343340	0	+	0.71	(0.59,1]	chr7	636371	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000675733.1:ENST00000674560.1:ENST00000675624.1:ENST00000675488.1:ENST00000676398.1:ENST00000447574.1:ENST00000674650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	398	2	2.73017	3.3454550000000003	3.96074	3.68857e-5	2.08401e-8	8.02542e-4	1.59215e-6
chr1	156311031	156311113	1314043	0	-	0.548781	(0.53,0.59]	chr1	133411	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	59	2	2.3186	3.345355	4.37211	0.00299541	5.43864e-6	0.0256157	1.81467e-4
chr16	71927813	71927912	15733923	0	+	0.383838	(0.36,0.39]	chr16	1253455	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1:ENST00000541180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	46	2	2.94781	3.34532	3.74283	3.10006e-4	1.50915e-5	0.0044733	4.23797e-4
chr2	8778895	8778976	2505063	0	-	0.407407	(0.39,0.42]	chr2	225958	1	CDS	CDS:UTR3:EXON_MRNA	KIDINS220	ENSG00000134313.16	ENST00000569008.2:ENST00000496383.5:ENST00000256707.8:ENST00000473731.5:ENST00000488729.5:ENST00000489024.5:ENST00000319688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.54172	3.3452900000000003	4.14886	0.00415881	0.00247353	0.0325842	0.0223024
chrX	155277902	155278002	19283293	0	-	0.41	(0.39,0.42]	chrX	1639083	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.95786	3.345205	3.73255	0.00138212	1.51578e-6	0.0149186	5.67784e-5
chr2	159768245	159768345	2163240	0	+	0.32	(0.29,0.33]	chr2	199224	10	UTR3	UTR3:EXON_MRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6	protein_coding	protein_coding	protein_coding	protein_coding	8	58	2	3.0357	3.345115	3.65453	4.36647e-5	2.84967e-6	0.00101315	9.64791e-5
chr14	22565042	22565111	14525911	0	-	0.449275	(0.42,0.455]	chr14	1137856	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000489532.6:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	31	2	1.67452	3.34507	5.01562	0.0264395	1.01971e-4	0.117445	0.0019861
chr16	67198216	67198303	15708764	0	+	0.666667	(0.59,1]	chr16	1249838	1	UTR3	UTR3:EXON_MRNA	E2F4	ENSG00000205250.9	ENST00000379378.8:ENST00000567007.5:ENST00000565226.1:ENST00000567228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.42639	3.344965	4.26354	0.0409084	0.0134233	0.163285	0.0743429
chr2	27204525	27204590	2569405	0	-	0.615385	(0.59,1]	chr2	231208	2	CDS	CDS:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000492069.5:ENST00000476319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.42639	3.344965	4.26354	0.0409084	0.0134233	0.163285	0.0743429
chr9	129006845	129006928	10482861	0	+	0.590361	(0.59,1]	chr9	791187	3	UTR3	UTR3:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.42639	3.344965	4.26354	0.0409084	0.0134233	0.163285	0.0743429
chr16	69703479	69703578	15725394	0	+	0.30303	(0.29,0.33]	chr16	1252140	73	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NFAT5:RP11-311C24.1	ENSG00000102908.22:ENSG00000260772.1	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7:ENST00000561622.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	3	28	2	2.63813	3.34495	4.05177	0.00803229	3.72769e-5	0.0528968	8.08834e-4
chr20	45899835	45899878	17987647	0	-	0.511628	(0.49,0.53]	chr20	1524185	1	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.78794	3.3449400000000002	3.90194	0.00251838	9.11374e-5	0.0226599	0.00182992
chr7	92605812	92605912	8924897	0	-	0.51	(0.49,0.53]	chr7	681136	10	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.78794	3.3449400000000002	3.90194	0.00251838	9.11374e-5	0.0226599	0.00182992
chr1	162524644	162524744	507509	0	+	0.4	(0.39,0.42]	chr1	54762	22	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.02517	3.34492	3.66467	8.3811e-4	3.60066e-4	0.00981548	0.00544157
chr17	75167944	75168043	16682494	0	-	0.292929	(0.29,0.33]	chr17	1372978	25	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7:ENST00000314523.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	110	2	2.35945	3.344905	4.33036	6.35788e-4	1.72077e-10	0.00842569	2.19344e-8
chr2	74154596	74154694	2740216	0	-	0.326531	(0.29,0.33]	chr2	243880	22	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	3.29722	3.3449	3.39258	3.75753e-5	9.57168e-6	9.03577e-4	2.66171e-4
chr3	73066913	73067013	3556717	0	+	0.32	(0.29,0.33]	chr3	309059	13	UTR3	UTR3:EXON_MRNA	PPP4R2	ENSG00000163605.15	ENST00000356692.10	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.99415	3.344725	4.6953	0.0333928	4.88271e-4	0.140128	0.00638318
chr2	70253932	70254010	2724292	0	-	0.435897	(0.42,0.455]	chr2	242720	2	EXON_PSEUDO	EXON_PSEUDO	RPL39P15	ENSG00000231414.1	ENST00000446011.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	81	2	3.14519	3.34457	3.54395	9.5869e-6	6.53258e-6	2.66446e-4	2.12139e-4
chr8	127741157	127741256	9612682	0	+	0.181818	[0,0.29]	chr8	728500	3	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	11	82	2	3.21685	3.34455	3.47225	4.47669e-5	1.06099e-7	0.00103562	5.87186e-6
chr16	28727095	28727170	15619252	0	+	0.626667	(0.59,1]	chr16	1238311	2	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000566519.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	42	2	1.79051	3.3445400000000003	4.89857	0.0396851	0.00182139	0.161349	0.0176016
chr15	43406303	43406402	14895798	0	+	0.383838	(0.36,0.39]	chr15	1171082	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000565548.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.10159	3.34453	4.58747	0.00841765	6.55819e-4	0.0543584	0.00860229
chr19	972462	972561	17190408	0	+	0.40404	(0.39,0.42]	chr19	1411266	5	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	16	150	2	3.08714	3.3445150000000003	3.60189	1.72037e-6	1.66262e-8	6.98015e-5	1.20269e-6
chr11	32932740	32932839	11899054	0	+	0.363636	(0.36,0.39]	chr11	909001	11	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	2.53311	3.3444700000000003	4.15583	0.00345778	1.9188e-5	0.0293796	4.68725e-4
chr5	175959792	175959880	6986708	0	-	0.352273	(0.33,0.36]	chr5	533998	4	UTR3	UTR3:EXON_MRNA:INTRON	THOC3	ENSG00000051596.10	ENST00000432305.6:ENST00000515016.1:ENST00000265097.9:ENST00000628318.2:ENST00000505969.1	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.72403	3.34445	4.96487	0.0238301	9.26851e-5	0.109562	0.00185187
chr22	16650021	16650120	18286219	0	+	0.464646	(0.455,0.49]	chr22	1551703	16	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7:ENST00000415121.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	56	2	3.31171	3.3444450000000003	3.37718	1.87327e-4	2.04354e-5	0.00325006	4.9659e-4
chr9	35722170	35722223	10639753	0	-	0.528302	(0.49,0.53]	chr9	805150	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.99849	3.34443	3.69037	0.0226513	0.00630123	0.10505	0.0445415
chr20	31782319	31782390	17749793	0	+	0.56338	(0.53,0.59]	chr20	1498051	2	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.68432	3.344125	4.00393	0.0108084	0.00118971	0.064368	0.0128045
chr17	40389021	40389120	16538731	0	-	0.282828	[0,0.29]	chr17	1354547	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000577541.1	protein_coding	protein_coding	protein_coding	protein_coding	12	82	2	3.30355	3.34403	3.38451	4.03469e-6	4.97953e-7	1.42186e-4	2.20102e-5
chr12	120498304	120498398	13116608	0	+	0.361702	(0.36,0.39]	chr12	1023820	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000392508.2:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000552316.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	2.99086	3.343985	3.69711	3.25198e-4	1.63058e-5	0.00500369	4.12921e-4
chr4	78871849	78871948	4912296	0	+	0.383838	(0.36,0.39]	chr4	404387	1	CDS	CDS:UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	2.70772	3.34384	3.97996	1.92058e-4	2.61125e-6	0.00305488	9.89086e-5
chr7	103498164	103498252	8963228	0	-	0.431818	(0.42,0.455]	chr7	686105	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	3.05889	3.343725	3.62856	0.00524205	4.02604e-4	0.0399155	0.00549837
chr5	86620667	86620673	6073060	0	+	0.166667	[0,0.29]	chr5	476393	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	COX7C:SNORD138	ENSG00000127184.13:ENSG00000284078.1	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1:ENST00000510447.1:ENST00000637229.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	3	32	2	2.15488	3.3437	4.53252	0.0436536	1.35309e-6	0.170594	5.16241e-5
chr6	39194676	39194760	7690409	0	-	0.595238	(0.59,1]	chr6	589679	2	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	3.06258	3.3437	3.62482	0.00616167	7.40647e-4	0.0438642	0.00925967
chr2	61883458	61883548	2691489	0	-	0.377778	(0.36,0.39]	chr2	240583	1	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	10	89	2	2.79449	3.34361	3.89273	7.1495e-5	6.93625e-8	0.00150995	4.08152e-6
chr17	43240111	43240208	16552320	0	-	0.659794	(0.59,1]	chr17	1358299	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.42324	3.34339	4.26354	0.0134233	0.0116918	0.0743429	0.0686664
chr5	146128671	146128726	6891195	0	-	0.454545	(0.42,0.455]	chr5	527478	1	CDS	CDS:UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000508709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.11785	3.343365	4.56888	0.0154862	1.1745e-6	0.0836691	4.57782e-5
chr12	56143862	56143952	12898435	0	+	0.588889	(0.53,0.59]	chr12	1004319	1	UTR3	UTR3:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.94125	3.343335	3.74542	0.0012261800000000001	2.30148e-4	0.0135648	0.00352524
chr1	10420130	10420225	39919	0	+	0.421053	(0.42,0.455]	chr1	4839	5	UTR3	UTR3:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000270776.13	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.59462	3.34326	4.0919	0.0062772	9.53184e-7	0.0445415	3.84138e-5
chr5	168616443	168616535	6369405	0	+	0.478261	(0.455,0.49]	chr5	494770	2	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	150	2	1.90795	3.3432399999999998	4.77853	0.00332113	1.25804e-11	0.0285847	2.12958e-9
chr10	113916099	113916198	11263025	0	+	0.383838	(0.36,0.39]	chr10	858164	77	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.44447	3.3432049999999998	4.24194	0.0364669	0.00276729	0.145024	0.0247437
chr6	44442275	44442375	7163304	0	+	0.37	(0.36,0.39]	chr6	554032	62	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.44447	3.3432049999999998	4.24194	0.0364669	0.00276729	0.145024	0.0247437
chr9	33919114	33919213	10237996	0	+	0.383838	(0.36,0.39]	chr9	769835	20	UTR3	UTR3:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.44447	3.3432049999999998	4.24194	0.0364669	0.00276729	0.145024	0.0247437
chr8	143816619	143816719	10146155	0	-	0.45	(0.42,0.455]	chr8	762860	1	CDS	CDS:EXON_MRNA	PUF60	ENSG00000179950.14	ENST00000526683.6:ENST00000349157.10:ENST00000456095.6:ENST00000313352.11:ENST00000453551.6:ENST00000527197.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.59462	3.343085	4.09155	0.0062772	2.98142e-5	0.0445415	6.7355e-4
chr1	52375429	52375514	1018712	0	-	0.505882	(0.49,0.53]	chr1	105574	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.12684	3.343065	4.55929	0.0134683	0.00116196	0.0744999	0.0130851
chr17	17247479	17247560	16464185	0	-	0.493827	(0.49,0.53]	chr17	1344475	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000579716.2:ENST00000486032.1:ENST00000578317.5:ENST00000439936.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.12684	3.343065	4.55929	0.0134683	0.00116196	0.0744999	0.0130851
chr3	51995822	51995895	4181374	0	-	0.657534	(0.59,1]	chr3	352476	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000481629.1:ENST00000486565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	1192	2	2.63381	3.3429650000000004	4.05212	8.66234e-6	1.9362e-10	2.68009e-4	2.44749e-8
chr20	31760778	31760878	17749570	0	+	0.36	(0.33,0.36]	chr20	1498006	2	INTRON	INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.31697	3.3428750000000003	4.36878	0.00966431	0.0021194	0.0606263	0.0198008
chr3	155853193	155853293	4538370	0	-	0.39	(0.36,0.39]	chr3	376028	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000460729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	3.0992	3.342785	3.58637	5.86576e-4	5.84377e-4	0.00793559	0.00742331
chrX	155943385	155943481	18924244	0	+	0.333333	(0.33,0.36]	chrX	1612670	14	UTR3	UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	11	92	2	2.90152	3.342785	3.78405	3.9727e-5	4.42303e-8	9.49417e-4	2.76841e-6
chr2	135511443	135511543	2897178	0	-	0.48	(0.455,0.49]	chr2	258367	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZRANB3:G3BP1P1	ENSG00000121988.18:ENSG00000235651.1	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1:ENST00000413279.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	20	2	2.27492	3.3426649999999998	4.41041	0.0193827	0.00218771	0.0943643	0.0202707
chr22	37653778	37653873	18363023	0	+	0.663158	(0.59,1]	chr22	1561824	1	CDS	CDS:UTR3:EXON_MRNA	SH3BP1:RP1-37E16.13	ENSG00000100092.24:ENSG00000285304.1	ENST00000417536.5:ENST00000649765.2:ENST00000451997.6:ENST00000469947.5:ENST00000643339.1:ENST00000649107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	3	73	2	3.28861	3.342555	3.3965	0.0028753	1.83913e-4	0.0256141	0.00296795
chr16	1772320	1772391	15822453	0	-	0.56338	(0.53,0.59]	chr16	1261539	1	CDS	CDS:EXON_MRNA	MRPS34	ENSG00000074071.15	ENST00000177742.7:ENST00000397375.7:ENST00000569585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.86102	3.342545	3.82407	0.0179666	0.0017805	0.0918323	0.0172974
chr3	150581617	150581681	3807943	0	+	0.53125	(0.53,0.59]	chr3	325041	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000477551.5:ENST00000465535.1:ENST00000482471.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.86102	3.342545	3.82407	0.0179666	0.0017805	0.0918323	0.0172974
chr9	111926439	111926496	10420306	0	+	0.578947	(0.53,0.59]	chr9	784460	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000495085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.86102	3.342545	3.82407	0.0179666	0.0017805	0.0918323	0.0172974
chr16	85674520	85674619	15798098	0	+	0.494949	(0.49,0.53]	chr16	1257094	21	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	3.25514	3.34234	3.42954	0.00227467	0.00105489	0.0209546	0.0123035
chr2	47416295	47416362	1784641	0	+	0.492537	(0.49,0.53]	chr2	172473	1	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	3.25514	3.34234	3.42954	0.00227467	0.00105489	0.0209546	0.0123035
chr7	122681488	122681575	8500938	0	+	0.436782	(0.42,0.455]	chr7	648859	3	EXON_PSEUDO	EXON_PSEUDO	RPS26P31	ENSG00000235459.5	ENST00000473326.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.59462	3.34221	4.0898	0.00698074	0.0062772	0.0473262	0.0445415
chr18	3253347	3253428	16729710	0	+	0.407407	(0.39,0.42]	chr18	1380090	1	CDS	CDS:EXON_MRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000578562.6:ENST00000536605.1:ENST00000580887.5:ENST00000577510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	78	2	3.15915	3.3419499999999998	3.52475	2.84183e-5	1.59359e-6	7.14297e-4	5.91589e-5
chr17	4943425	4943519	16094322	0	+	0.478723	(0.455,0.49]	chr17	1294887	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000570492.5:ENST00000575400.5:ENST00000572382.5:ENST00000576965.1:ENST00000575524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.50904	3.3415550000000005	4.17407	0.0310515	1.754e-5	0.131262	4.38078e-4
chr6	89422366	89422455	7837060	0	-	0.483146	(0.455,0.49]	chr6	600311	4	EXON_PSEUDO	EXON_PSEUDO	NACAP7	ENSG00000218965.1	ENST00000407371.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	33	2	2.50904	3.3415550000000005	4.17407	0.0310515	1.754e-5	0.131262	4.38078e-4
chr7	65974918	65974994	8834521	0	-	0.486842	(0.455,0.49]	chr7	674590	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000465785.5:ENST00000479038.1:ENST00000489482.1:ENST00000475316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	2.50904	3.3415550000000005	4.17407	0.0310515	1.754e-5	0.131262	4.38078e-4
chr3	161429502	161429597	4554333	0	-	0.526316	(0.49,0.53]	chr3	377118	5	EXON_PSEUDO	EXON_PSEUDO	RPL23AP42	ENSG00000234851.4	ENST00000471152.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	28	271	2	2.66455	3.3415250000000003	4.0185	2.23353e-6	1.19865e-10	7.86632e-5	1.76314e-8
chr11	78109511	78109581	12477809	0	-	0.385714	(0.36,0.39]	chr11	970725	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALG8	ENSG00000159063.14	ENST00000679559.1:ENST00000680398.1:ENST00000681221.1:ENST00000527099.2:ENST00000681489.1:ENST00000525783.6:ENST00000529139.6:ENST00000680761.1:ENST00000525870.6:ENST00000680866.1:ENST00000680223.1:ENST00000526737.6:ENST00000681575.1:ENST00000299626.10:ENST00000680467.1:ENST00000679497.1:ENST00000681351.1:ENST00000679697.1:ENST00000680580.1:ENST00000526849.6:ENST00000680256.1:ENST00000680797.1:ENST00000681723.1:ENST00000680142.1:ENST00000679685.1:ENST00000681384.1:ENST00000679874.1:ENST00000679444.1:ENST00000680459.1:ENST00000681699.1:ENST00000679986.1:ENST00000680063.1:ENST00000530608.6:ENST00000681765.1:ENST00000681225.1:ENST00000681417.1:ENST00000530910.6:ENST00000680329.1:ENST00000679581.1:ENST00000524925.2:ENST00000681853.1:ENST00000376156.7:ENST00000679648.1:ENST00000680101.1:ENST00000680829.1:ENST00000680499.1:ENST00000525761.3:ENST00000532440.6:ENST00000680996.1:ENST00000532306.6:ENST00000680399.1:ENST00000679539.1:ENST00000615266.5:ENST00000681957.1:ENST00000532552.2:ENST00000680643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	2.25794	3.3414849999999996	4.42503	0.00429221	0.00133228	0.0333617	0.0144372
chr12	54401584	54401665	13343780	0	-	0.580247	(0.53,0.59]	chr12	1049773	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000552583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.20874	3.3414650000000004	3.47419	0.00278422	8.75273e-4	0.0241009	0.0106963
chr19	49673777	49673846	17372006	0	+	0.565217	(0.53,0.59]	chr19	1443477	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L12	ENSG00000126453.10	ENST00000611631.4:ENST00000614495.4:ENST00000616144.4:ENST00000619007.4:ENST00000246785.7:ENST00000441864.6:ENST00000246784.8:ENST00000594157.5:ENST00000598979.5:ENST00000600947.5:ENST00000598306.2:ENST00000594793.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	3.20874	3.3414650000000004	3.47419	0.00278422	8.75273e-4	0.0241009	0.0106963
chr6	31811200	31811296	7662714	0	-	0.53125	(0.53,0.59]	chr6	585379	12	CDS	CDS:EXON_MRNA	HSPA1L	ENSG00000204390.10	ENST00000375654.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	3.21941	3.34145	3.46349	0.00266171	9.2216e-4	0.0240332	0.0104432
chr16	85675015	85675114	15798103	0	+	0.373737	(0.36,0.39]	chr16	1257094	26	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	91	2	3.03116	3.34143	3.6517	2.92637e-5	1.51512e-7	7.29317e-4	8.00663e-6
chr6	87700949	87701048	7828216	0	-	0.494949	(0.49,0.53]	chr6	599863	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6:ENST00000420494.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	1.56396	3.34132	5.11868	0.0388812	9.66505e-5	0.158355	0.00175267
chr20	49953401	49953498	17814651	0	+	0.474227	(0.455,0.49]	chr20	1506968	13	UTR3	UTR3:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000622999.3:ENST00000244061.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	62	2	3.01521	3.3413000000000004	3.66739	6.35543e-5	2.02214e-5	0.00124813	5.39633e-4
chr5	93683667	93683766	6701893	0	-	0.565657	(0.53,0.59]	chr5	516400	1	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	204	2	2.97835	3.34111	3.70387	1.89263e-6	1.95524e-8	6.87101e-5	1.51258e-6
chr11	102396428	102396526	12562682	0	-	0.234694	[0,0.29]	chr11	974345	2	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.28583	3.3411049999999998	3.39638	0.00346525	1.22724e-4	0.0293796	0.00213239
chr11	126262937	126263034	12645133	0	-	0.28866000000000003	[0,0.29]	chr11	981826	1	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.28583	3.3411049999999998	3.39638	0.00346525	1.22724e-4	0.0293796	0.00213239
chr3	185917418	185917516	4628253	0	-	0.265306	[0,0.29]	chr3	382241	30	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	3.28583	3.3411049999999998	3.39638	0.00346525	1.22724e-4	0.0293796	0.00213239
chr14	100334676	100334775	14788502	0	-	0.40404	(0.39,0.42]	chr14	1158691	10	UTR3	UTR3:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	3.3111	3.3410900000000003	3.37108	2.11919e-4	5.21879e-6	0.00357806	1.60277e-4
chr19	38307674	38307752	17559398	0	-	0.679487	(0.59,1]	chr19	1474569	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	96	2	2.45126	3.3407850000000003	4.23031	0.00209267	3.46639e-5	0.0204266	7.61275e-4
chr19	8322075	8322091	17219829	0	+	0.6875	(0.59,1]	chr19	1417492	1	UTR3	UTR3:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	199	2	3.08792	3.34078	3.59364	8.82038e-5	1.40249e-6	0.00178337	5.31563e-5
chr11	125633256	125633351	12194684	0	+	0.442105	(0.42,0.455]	chr11	940843	2	CDS	CDS:EXON_MRNA	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532669.5:ENST00000527013.6:ENST00000532449.6:ENST00000531062.2:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.96788	3.340765	3.71365	0.00109784	2.63375e-4	0.0119666	0.00427022
chr12	103946785	103946867	13056916	0	+	0.390244	(0.39,0.42]	chr12	1017357	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	54	685	2	2.17328	3.34058	4.50788	4.48928e-5	1e-12	0.00103842	2.25522e-10
chr13	39017499	39017544	13976274	0	-	0.355556	(0.33,0.36]	chr13	1096572	1	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000602512.1:ENST00000602899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.31026	3.3405750000000003	4.37089	0.0519897	5.4707e-6	0.18423900000000001	1.82072e-4
chr11	46750353	46750433	12383545	0	-	0.3375	(0.33,0.36]	chr11	955997	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	61	2	2.95737	3.34051	3.72365	3.19155e-4	8.59228e-6	0.00491578	2.43082e-4
chr19	38836633	38836721	17561062	0	-	0.375	(0.36,0.39]	chr19	1475059	4	UTR3	UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.88918	3.3405050000000003	3.79183	0.00212816	8.47255e-6	0.0206577	2.39831e-4
chr5	31554173	31554270	5919701	0	+	0.402062	(0.39,0.42]	chr5	463928	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	3.23174	3.340485	3.44923	0.00105208	2.82122e-4	0.0123035	0.00415762
chr1	161958499	161958554	503814	0	+	0.490909	(0.49,0.53]	chr1	54597	2	CDS	CDS:UTR3:EXON_MRNA	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000681557.1:ENST00000681912.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.99849	3.3404749999999996	3.68246	0.00630123	3.06313e-4	0.0445415	0.00442973
chr14	20316226	20316324	14517253	0	-	0.510204	(0.49,0.53]	chr14	1136479	1	CDS	CDS:EXON_MRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000554184.5:ENST00000556854.5:ENST00000557665.5:ENST00000554047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.99849	3.3404749999999996	3.68246	0.00630123	3.06313e-4	0.0445415	0.00442973
chr3	158666303	158666386	3841721	0	+	0.506024	(0.49,0.53]	chr3	327008	1	CDS	CDS:UTR3:EXON_MRNA	GFM1	ENSG00000168827.15	ENST00000486715.6:ENST00000478254.5:ENST00000478576.5:ENST00000264263.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.99849	3.3404749999999996	3.68246	0.00630123	3.06313e-4	0.0445415	0.00442973
chr7	128986824	128986920	9060496	0	-	0.510417	(0.49,0.53]	chr7	691815	2	CDS	CDS:EXON_MRNA:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.99849	3.3404749999999996	3.68246	0.00630123	3.06313e-4	0.0445415	0.00442973
chr11	61876110	61876190	12406252	0	-	0.5875	(0.53,0.59]	chr11	960674	1	CDS	CDS:EXON_MRNA	FADS3	ENSG00000221968.9	ENST00000527697.5:ENST00000533676.5:ENST00000278829.7:ENST00000529404.5:ENST00000527379.5:ENST00000525094.5:ENST00000525588.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.45052	3.34037	4.23022	0.00355092	1.38676e-5	0.0300049	3.5918e-4
chr4	102885358	102885430	5014907	0	+	0.347222	(0.33,0.36]	chr4	408743	3	CDS	CDS:UTR3:EXON_MRNA	CISD2	ENSG00000145354.12	ENST00000646632.1:ENST00000273986.10:ENST00000574446.1:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	44	2	2.63456	3.3403650000000003	4.04617	0.00707461	1.29334e-6	0.0478528	4.97655e-5
chr16	2770867	2770910	15494992	0	+	0.534884	(0.53,0.59]	chr16	1227820	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000574866.1:ENST00000573692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	2.87264	3.34035	3.80806	0.00168899	1.65022e-4	0.0175515	0.00269147
chr19	49108343	49108443	17368668	0	+	0.61	(0.59,1]	chr19	1442431	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	3.11647	3.340195	3.56392	0.00535979	8.86707e-4	0.0406564	0.0101815
chr15	90919687	90919787	15103761	0	+	0.56	(0.53,0.59]	chr15	1188781	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000360468.7:ENST00000557865.5:ENST00000561448.5:ENST00000557990.1:ENST00000558538.5:ENST00000560926.5:ENST00000559341.5:ENST00000558374.5:ENST00000559558.1:ENST00000559704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	88	2	2.47	3.340155	4.21031	0.0089333	3.71502e-8	0.0567495	2.39443e-6
chr17	41977260	41977323	16544423	0	-	0.444444	(0.42,0.455]	chr17	1356617	1	CDS	CDS:UTR3:EXON_MRNA	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000587727.6:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000590197.2:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	1.87908	3.33986	4.80064	0.0189336	3.0479e-4	0.0958835	0.00472028
chr1	150235878	150235971	1288600	0	-	0.451613	(0.42,0.455]	chr1	128171	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000436748.6:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5:ENST00000534220.1:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.42938	3.33983	4.25028	0.0045028	0.00406761	0.0349711	0.032143
chr8	125009171	125009257	9595458	0	+	0.395349	(0.39,0.42]	chr8	727919	1	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10	protein_coding	protein_coding	protein_coding	protein_coding	15	150	2	3.05874	3.339625	3.62051	8.80979e-6	7.19236e-9	2.72329e-4	5.8437e-7
chr20	34292357	34292432	17946788	0	-	0.6	(0.59,1]	chr20	1519981	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000468908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	86	2	3.0544	3.33961	3.62482	7.40647e-4	2.52807e-4	0.00925967	0.00381058
chr21	37513923	37514023	18117417	0	+	0.34	(0.33,0.36]	chr21	1536308	15	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.47163	3.339595	4.20756	0.0129725	0.00386591	0.0724783	0.0310764
chr9	99970163	99970262	10385853	0	+	0.343434	(0.33,0.36]	chr9	782500	16	UTR3	UTR3:EXON_MRNA	STX17	ENSG00000136874.11	ENST00000259400.11	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.47163	3.339595	4.20756	0.0129725	0.00386591	0.0724783	0.0310764
chr19	39846300	39846379	17563616	0	-	0.658228	(0.59,1]	chr19	1475768	1	UTR5	UTR5:EXON_MRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000594443.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	243	2	2.12534	3.339335	4.55333	0.00125994	1.82157e-8	0.013837	1.30603e-6
chr12	26996741	26996801	13268992	0	-	0.433333	(0.42,0.455]	chr12	1039887	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000543882.5:ENST00000542667.5:ENST00000535819.1:ENST00000543655.5:ENST00000543803.5:ENST00000542019.1:ENST00000539741.5:ENST00000543088.5:ENST00000535423.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.43733	3.33933	4.24133	0.0103896	0.00326918	0.0640167	0.0282494
chr4	1998081	1998180	5280859	0	-	0.454545	(0.42,0.455]	chr4	425196	56	INTRON	INTRON	NELFA	ENSG00000185049.16	ENST00000542778.5:ENST00000382882.9:ENST00000333877.8:ENST00000431323.6:ENST00000455762.5:ENST00000421397.5:ENST00000411649.3:ENST00000443203.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.43733	3.33933	4.24133	0.0103896	0.00326918	0.0640167	0.0282494
chr9	135933226	135933312	10887433	0	-	0.523256	(0.49,0.53]	chr9	826816	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	91	2	3.04894	3.339295	3.62965	5.10967e-5	7.11626e-7	0.00114668	2.99017e-5
chr1	42755547	42755637	966522	0	-	0.455556	(0.455,0.49]	chr1	101750	1	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.30139	3.3391599999999997	4.37693	0.0530131	4.5365e-6	0.195536	1.42727e-4
chr12	110347115	110347207	13085921	0	+	0.391304	(0.39,0.42]	chr12	1020554	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	2.27503	3.3391100000000002	4.40319	0.0025739	3.72195e-6	0.0235767	1.21063e-4
chr11	123060191	123060268	12636992	0	-	0.480519	(0.455,0.49]	chr11	980720	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000534567.5:ENST00000527387.5:ENST00000532182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	64	2	3.2935	3.339105	3.38471	3.58585e-5	2.00074e-5	7.84153e-4	5.35199e-4
chr6	8090116	8090216	7590087	0	-	0.3	(0.29,0.33]	chr6	578987	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10:ENST00000507463.1:ENST00000515633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.22218	3.3387599999999997	4.45534	0.023782	0.00110984	0.109413	0.0127344
chr7	99333324	99333353	8421691	0	+	0.310345	(0.29,0.33]	chr7	641749	1	UTR5	UTR5:EXON_MRNA	RP5-900K19.2:ARPC1A	ENSG00000284292.1:ENSG00000241685.10	ENST00000638617.1:ENST00000441989.6:ENST00000262942.10:ENST00000432786.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.22218	3.3387599999999997	4.45534	0.023782	0.00110984	0.109413	0.0127344
chr16	2766388	2766487	15494939	0	+	0.525253	(0.49,0.53]	chr16	1227802	50	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	12	118	2	2.26638	3.338575	4.41077	4.15657e-4	4.8374e-9	0.00608448	4.12233e-7
chr16	85672935	85673034	15798082	0	+	0.525253	(0.49,0.53]	chr16	1257094	5	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	69	2	3.23781	3.338515	3.43922	5.17993e-5	1.33812e-5	0.00115752	3.50276e-4
chr2	27234517	27234601	1691677	0	+	0.5	(0.49,0.53]	chr2	165733	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000479002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	3.23548	3.33849	3.4415	9.98297e-4	2.76544e-4	0.0111246	0.00444204
chr1	6532023	6532079	845105	0	-	0.410714	(0.39,0.42]	chr1	85326	2	CDS	CDS:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	1.99911	3.33838	4.67765	0.0477207	7.04737e-4	0.17993	0.00848325
chr3	9893571	9893668	3300582	0	+	0.402062	(0.39,0.42]	chr3	290136	3	UTR3	UTR3:EXON_MRNA	JAGN1	ENSG00000171135.15	ENST00000489724.2:ENST00000647897.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.99911	3.33838	4.67765	0.0477207	7.04737e-4	0.17993	0.00848325
chr7	92606209	92606308	8924901	0	-	0.40404	(0.39,0.42]	chr7	681136	14	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.99911	3.33838	4.67765	0.0477207	7.04737e-4	0.17993	0.00848325
chr8	140525949	140526049	10132102	0	-	0.42	(0.39,0.42]	chr8	760954	59	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.99911	3.33838	4.67765	0.0477207	7.04737e-4	0.17993	0.00848325
chrX	41675942	41676034	19049254	0	-	0.413043	(0.39,0.42]	chrX	1619183	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	CASK:YWHAZP10	ENSG00000147044.23:ENSG00000217624.2	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643853.1:ENST00000643831.2:ENST00000647118.2:ENST00000405276.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	2	19	2	1.99911	3.33838	4.67765	0.0477207	7.04737e-4	0.17993	0.00848325
chr12	6537913	6537996	12713622	0	+	0.554217	(0.53,0.59]	chr12	986662	5	CDS	CDS:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	75	911	2	3.09243	3.338355	3.58428	1.35179e-8	4.54944e-11	1.10165e-6	6.75699e-9
chr1	149885405	149885500	1287097	0	-	0.515789	(0.49,0.53]	chr1	127851	11	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	7	80	2	3.23781	3.338325	3.43884	5.17993e-5	3.18417e-6	0.00115752	1.06148e-4
chr2	235511755	235511854	2443692	0	+	0.40404	(0.39,0.42]	chr2	220916	43	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	3.11549	3.3382300000000003	3.56097	0.00403491	6.12149e-4	0.032143	0.00818575
chr7	65956492	65956591	8301922	0	+	0.414141	(0.39,0.42]	chr7	632922	22	UTR3	UTR3:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.11549	3.3382300000000003	3.56097	0.00403491	6.12149e-4	0.032143	0.00818575
chr8	41510181	41510281	9303509	0	+	0.26	[0,0.29]	chr8	712044	7	UTR3	UTR3:EXON_MRNA	GOLGA7	ENSG00000147533.17	ENST00000520817.5:ENST00000405786.2:ENST00000357743.9	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.28583	3.3382199999999997	3.39061	0.00346525	0.00134497	0.0293796	0.0140037
chr6	28158866	28158965	7105840	0	+	0.323232	(0.29,0.33]	chr6	543601	50	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	3.14932	3.338125	3.52693	1.84463e-4	7.50057e-6	0.00321185	2.17987e-4
chr10	103392370	103392457	11672891	0	-	0.37931	(0.36,0.39]	chr10	890277	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP5MK	ENSG00000173915.16	ENST00000369825.6:ENST00000369815.6:ENST00000309579.7:ENST00000337003.4:ENST00000369811.5	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	2.55738	3.337975	4.11857	0.0013225	7.37081e-7	0.0144203	3.07785e-5
chr19	1058682	1058747	17191092	0	+	0.569231	(0.53,0.59]	chr19	1411550	2	CDS	CDS:UTR3:EXON_MRNA	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000435683.7:ENST00000673773.1:ENST00000529442.7:ENST00000525073.6:ENST00000532194.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	1.90953	3.33793	4.76633	0.0517711	6.98999e-4	0.193577	0.00846751
chr9	35704668	35704741	10639523	0	-	0.575342	(0.53,0.59]	chr9	805007	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000486788.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	1.90953	3.33793	4.76633	0.0517711	6.98999e-4	0.193577	0.00846751
chr14	81475491	81475590	14732715	0	-	0.393939	(0.39,0.42]	chr14	1154139	41	UTR3	UTR3:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.22662	3.3379250000000003	3.44923	0.00257296	0.00105208	0.0229363	0.0123035
chr3	128764925	128765018	4441955	0	-	0.612903	(0.59,1]	chr3	369079	6	EXON_PSEUDO	EXON_PSEUDO	FTH1P4	ENSG00000242992.3	ENST00000480365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	119	2	2.24397	3.337735	4.4315	0.0206682	3.84288e-7	0.0997234	1.76177e-5
chr14	67678320	67678420	14683354	0	-	0.55	(0.53,0.59]	chr14	1149625	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-1012A1.4:RDH11	ENSG00000258466.5:ENSG00000072042.13	ENST00000553306.5:ENST00000557564.1:ENST00000553582.5:ENST00000554493.1:ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000554035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	67	2	2.90632	3.33773	3.76914	3.72925e-4	1.07544e-5	0.00559101	2.9314e-4
chr19	38723667	38723722	17323692	0	+	0.636364	(0.59,1]	chr19	1434341	2	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.55837	3.337545	4.11672	0.0222273	0.00709491	0.105595	0.0479177
chr19	11106625	11106687	17230033	0	+	0.532258	(0.53,0.59]	chr19	1419561	2	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000558528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	58	2	2.49112	3.3374249999999996	4.18373	0.00129901	1.85867e-5	0.0142093	4.56627e-4
chrX	1386241	1386331	18925564	0	-	0.388889	(0.36,0.39]	chrX	1612947	2	UTR3	UTR3:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	3.00115	3.337355	3.67356	0.0012486	2.37283e-6	0.0137762	8.2933e-5
chr20	38129729	38129827	17962928	0	-	0.632653	(0.59,1]	chr20	1522305	25	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.04362	3.33734	4.63106	0.036186	0.00537945	0.145024	0.0406564
chr18	3255818	3255918	16729739	0	+	0.41	(0.39,0.42]	chr18	1380104	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000536605.1:ENST00000580887.5:ENST00000578038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	107	2	2.71916	3.3373049999999997	3.95545	2.11218e-4	9.85344e-9	0.00357316	7.68085e-7
chr1	150965562	150965659	1291360	0	-	0.525773	(0.49,0.53]	chr1	128670	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	3.23548	3.33716	3.43884	2.76544e-4	3.18417e-6	0.00444204	1.06148e-4
chr8	60620788	60620886	9353517	0	+	0.479592	(0.455,0.49]	chr8	715323	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAB2A	ENSG00000104388.15	ENST00000531289.5:ENST00000262646.12:ENST00000529579.5:ENST00000466595.5:ENST00000530071.5:ENST00000396696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	2.95526	3.33713	3.719	2.88167e-4	1.42274e-5	0.00423739	4.02509e-4
chrX	103216972	103217063	18792581	0	+	0.483516	(0.455,0.49]	chrX	1602161	6	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.78188	3.337115	3.89235	7.46087e-4	9.60445e-5	0.00892618	0.00190731
chr2	3580109	3580163	1616682	0	+	0.555556	(0.53,0.59]	chr2	160402	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1:ENST00000472966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	59	2	2.79538	3.33711	3.87884	2.47731e-4	1.11478e-4	0.00374232	0.00213212
chr12	110339575	110339648	13085834	0	+	0.547945	(0.53,0.59]	chr12	1020520	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	69	2	3.18707	3.336935	3.4868	3.55681e-4	1.01599e-5	0.00539248	2.80762e-4
chr2	27309587	27309683	2569761	0	-	0.40625	(0.39,0.42]	chr2	231327	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000620797.4:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	103	2	3.29649	3.3369299999999997	3.37737	3.31483e-6	6.07369e-7	1.20855e-4	2.61508e-5
chr17	76067216	76067312	16687037	0	-	0.40625	(0.39,0.42]	chr17	1374193	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SRP68	ENSG00000167881.15	ENST00000307877.7:ENST00000539137.5:ENST00000592704.5:ENST00000591272.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.18025	3.336745	4.49324	0.00587938	0.00108192	0.0424857	0.0124943
chr2	20685657	20685752	2542671	0	-	0.4	(0.39,0.42]	chr2	228719	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000470099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.27012	3.3366550000000004	4.40319	0.00945558	3.72195e-6	0.0594007	1.21063e-4
chr19	40762987	40763074	17330924	0	+	0.701149	(0.59,1]	chr19	1436153	2	CDS	CDS:EXON_MRNA	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	88	2	3.18293	3.3365650000000002	3.4902	0.00130379	1.28442e-4	0.0142445	0.0022231
chr1	160266634	160266732	1328435	0	-	0.571429	(0.53,0.59]	chr1	135908	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-574F21.3:RPSAP18	ENSG00000258465.8:ENSG00000224261.2	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000453374.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	18	2	2.515	3.336525	4.15805	0.0292633	0.00680952	0.129773	0.0468196
chr12	6982675	6982728	13189006	0	-	0.54717	(0.53,0.59]	chr12	1032865	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5:ENST00000540090.5:ENST00000543794.5:ENST00000536797.5:ENST00000620843.1:ENST00000536971.1:ENST00000545459.5:ENST00000538910.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.515	3.336525	4.15805	0.0292633	0.00680952	0.129773	0.0468196
chr17	82750495	82750575	16385350	0	+	0.55	(0.53,0.59]	chr17	1332863	2	CDS	CDS:EXON_MRNA	FN3K	ENSG00000167363.14	ENST00000300784.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.515	3.336525	4.15805	0.0292633	0.00680952	0.129773	0.0468196
chr20	18525859	18525932	17719528	0	+	0.547945	(0.53,0.59]	chr20	1495675	2	CDS	CDS:EXON_MRNA	SEC23B	ENSG00000101310.17	ENST00000336714.8:ENST00000450074.6:ENST00000262544.6:ENST00000643747.1:ENST00000650089.1:ENST00000377465.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.515	3.336525	4.15805	0.0292633	0.00680952	0.129773	0.0468196
chr3	12664046	12664125	4041736	0	-	0.582278	(0.53,0.59]	chr3	339272	4	UTR5	UTR5:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7:ENST00000423275.5:ENST00000416093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.515	3.336525	4.15805	0.0292633	0.00680952	0.129773	0.0468196
chrX	49584595	49584658	18695181	0	+	0.587302	(0.53,0.59]	chrX	1595029	1	CDS	CDS:EXON_MRNA	GAGE12H	ENSG00000224902.5	ENST00000381722.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.515	3.336525	4.15805	0.0292633	0.00680952	0.129773	0.0468196
chr11	118401601	118401665	12157882	0	+	0.671875	(0.59,1]	chr11	936938	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000534385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	165	2	3.21276	3.33641	3.46006	1.47498e-4	8.5433e-6	0.00269445	2.41736e-4
chr20	21115007	21115102	17732959	0	+	0.410526	(0.39,0.42]	chr20	1496339	4	EXON_PSEUDO	EXON_PSEUDO	RPL24P2	ENSG00000235065.1	ENST00000421023.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	38	2	2.91508	3.3363050000000003	3.75753	4.41174e-4	2.04026e-4	0.0062930699999999996	0.00320361
chr1	21885319	21885385	891338	0	-	0.621212	(0.59,1]	chr1	92575	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.77418	3.336295	3.89841	0.0160729	1.91539e-4	0.0860154	0.00304814
chr15	43405313	43405412	14895788	0	+	0.484848	(0.455,0.49]	chr15	1171082	2	UTR3	UTR3:EXON_MRNA:INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000561691.5:ENST00000563963.1:ENST00000563147.5:ENST00000565548.1:ENST00000566251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.40664	3.336285	4.26593	0.0123662	0.00372962	0.0705839	0.0302984
chr9	33948450	33948550	10633709	0	-	0.49	(0.455,0.49]	chr9	803868	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	1.79605	3.33619	4.87633	0.0427708	2.95855e-4	0.168094	0.00432147
chr10	17229522	17229614	10938769	0	+	0.76087	(0.59,1]	chr10	832983	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000497849.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	116	2	2.6892	3.33599	3.98278	0.00147019	8.2153e-6	0.0149767	2.56136e-4
chr2	128000055	128000146	2870153	0	-	0.516484	(0.49,0.53]	chr2	256638	1	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.15207	3.33594	3.51981	0.00347189	6.88328e-4	0.0286293	0.00876781
chr4	94666791	94666887	4985295	0	+	0.40625	(0.39,0.42]	chr4	407482	9	UTR3	UTR3:EXON_MRNA	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000317968.9	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	3.24562	3.3358600000000003	3.4261	0.00107164	5.84121e-5	0.0118238	0.00129108
chr11	61368609	61368709	11968868	0	+	0.5	(0.49,0.53]	chr11	916934	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM138	ENSG00000149483.12	ENST00000278826.11:ENST00000423772.6:ENST00000545420.1:ENST00000381787.2:ENST00000539776.1:ENST00000543833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	29	2	3.23006	3.3357799999999997	3.4415	0.00253719	9.98297e-4	0.0233955	0.0111246
chr17	35725346	35725443	16207516	0	+	0.494845	(0.49,0.53]	chr17	1309154	18	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	3.23006	3.3357799999999997	3.4415	0.00253719	9.98297e-4	0.0233955	0.0111246
chr17	44863654	44863718	16560046	0	-	0.609375	(0.59,1]	chr17	1359740	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000585616.5:ENST00000587914.1:ENST00000585794.5:ENST00000586654.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	26	2	2.68392	3.335715	3.98751	0.0301044	0.0202468	0.129773	0.0984041
chr20	45425826	45425909	17801723	0	+	0.60241	(0.59,1]	chr20	1505128	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PIGT:MIR6812	ENSG00000124155.18:ENSG00000273555.1	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000638714.1:ENST00000640542.1:ENST00000639783.1:ENST00000640210.1:ENST00000640194.1:ENST00000640324.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1:ENST00000640549.1:ENST00000639872.1:ENST00000638927.1:ENST00000638277.1:ENST00000638241.1:ENST00000640253.1:ENST00000638691.1:ENST00000424705.2:ENST00000640123.1:ENST00000619733.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	1	26	2	2.68392	3.335715	3.98751	0.0301044	0.0202468	0.129773	0.0984041
chr12	93409939	93410038	13472813	0	-	0.393939	(0.39,0.42]	chr12	1059385	44	UTR3	UTR3:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	3.1853	3.335435	3.48557	8.65244e-5	9.58193e-6	0.00177086	2.6635e-4
chr3	98591065	98591155	4319660	0	-	0.477778	(0.455,0.49]	chr3	360287	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000513674.1:ENST00000515041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	73	2	3.12843	3.33533	3.54223	0.00392855	4.10563e-7	0.0322851	1.87484e-5
chr17	28639387	28639460	16486685	0	-	0.506849	(0.49,0.53]	chr17	1348053	2	CDS	CDS:UTR3:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000580882.5:ENST00000581267.1:ENST00000577417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.60116	3.33529	4.06942	0.0056515	3.44689e-5	0.0422191	7.57659e-4
chr4	77035689	77035787	4900543	0	+	0.510204	(0.49,0.53]	chr4	403559	13	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.60116	3.33529	4.06942	0.0056515	3.44689e-5	0.0422191	7.57659e-4
chr20	49085334	49085386	17811753	0	+	0.346154	(0.33,0.36]	chr20	1506552	2	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	3.32157	3.3352500000000003	3.34893	2.22813e-4	1.77615e-4	0.00370775	0.00287736
chr3	129394863	129394958	4444215	0	-	0.578947	(0.53,0.59]	chr3	369367	7	INTRON	INTRON	RPL32P3	ENSG00000251474.6	ENST00000510078.5:ENST00000507287.5:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	24	2	1.89806	3.33514	4.77222	0.0532477	6.67251e-4	0.184818	0.00867533
chr14	69442167	69442266	14373287	0	+	0.494949	(0.49,0.53]	chr14	1123155	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A9	ENSG00000029364.12	ENST00000556125.5:ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	3.15044	3.335125	3.51981	6.88328e-4	4.32676e-4	0.00876781	0.00583708
chr1	112696199	112696251	411741	0	+	0.538462	(0.53,0.59]	chr1	40615	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOV10	ENSG00000155363.18	ENST00000413052.6:ENST00000369645.5:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.36244	3.3350999999999997	4.30776	0.0131162	0.00407289	0.073569	0.0324137
chr1	202733594	202733691	1451765	0	-	0.546392	(0.53,0.59]	chr1	145787	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000472822.6:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1:ENST00000235790.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.36244	3.3350999999999997	4.30776	0.0131162	0.00407289	0.073569	0.0324137
chr11	62595415	62595492	12409385	0	-	0.532468	(0.53,0.59]	chr11	961054	3	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.36244	3.3350999999999997	4.30776	0.0131162	0.00407289	0.073569	0.0324137
chr15	64685073	64685172	14978124	0	+	0.333333	(0.33,0.36]	chr15	1177327	35	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.15976	3.335065	3.51037	0.00437542	5.65559e-5	0.0340502	0.00114087
chr13	52414166	52414263	14035128	0	-	0.463918	(0.455,0.49]	chr13	1100944	17	UTR3	UTR3:EXON_MRNA:INTRON	THSD1:VPS36	ENSG00000136114.17:ENSG00000136100.14	ENST00000648254.1:ENST00000650274.1:ENST00000611132.4:ENST00000378060.9:ENST00000497149.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	1.90955	3.3350150000000003	4.76048	0.0171034	3.99985e-4	0.0903636	0.00588767
chr20	2463822	2463899	17878954	0	-	0.649351	(0.59,1]	chr20	1512829	2	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	100	2	2.80637	3.3349849999999996	3.8636	0.00274489	1.64806e-5	0.0238522	4.57273e-4
chr1	228098912	228099012	744042	0	+	0.48	(0.455,0.49]	chr1	75099	10	UTR3	UTR3:EXON_MRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding	23	240	2	2.97404	3.334885	3.69573	1.5165e-6	4.96192e-10	6.25012e-5	5.64436e-8
chr7	6403396	6403491	8114072	0	+	0.326316	(0.29,0.33]	chr7	620430	11	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.85656	3.3348199999999997	3.81308	9.79425e-4	7.56828e-6	0.0116574	2.18724e-4
chr17	32369759	32369857	16200648	0	+	0.377551	(0.36,0.39]	chr17	1308199	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	3.10403	3.3348	3.56557	6.94453e-6	5.5145e-6	2.24818e-4	1.6788e-4
chr21	33552910	33553009	18101186	0	+	0.444444	(0.42,0.455]	chr21	1534527	23	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	2.50714	3.3347499999999997	4.16236	0.00122903	1.83138e-5	0.0130835	4.99708e-4
chr2	73251294	73251363	1885493	0	+	0.507246	(0.49,0.53]	chr2	178580	2	CDS	CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.98834	3.33461	3.68088	2.39968e-4	1.82756e-5	0.00394917	4.52458e-4
chr16	29697254	29697311	15626488	0	+	0.649123	(0.59,1]	chr16	1239215	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1:ENST00000564967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.32384	3.3343550000000004	4.34487	0.0157639	0.0123678	0.0851539	0.0705839
chr1	160279161	160279258	1328562	0	-	0.43299	(0.42,0.455]	chr1	135912	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-574F21.3:PEX19	ENSG00000258465.8:ENSG00000162735.19	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000368072.10:ENST00000472750.5:ENST00000467711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	2.86963	3.33422	3.79881	4.62477e-4	1.65328e-4	0.00613242	0.0029267300000000002
chr11	34139384	34139439	11905890	0	+	0.545455	(0.53,0.59]	chr11	909713	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1:ENST00000530017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.50447	3.33415	4.16383	0.0301162	0.00659193	0.130016	0.0454205
chr16	29383799	29383897	15909053	0	-	0.540816	(0.53,0.59]	chr16	1274086	24	CDS	CDS:EXON_MRNA	NPIPB11	ENSG00000254206.5	ENST00000524087.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.50447	3.33415	4.16383	0.0301162	0.00659193	0.130016	0.0454205
chr6	37332470	37332570	7137069	0	+	0.55	(0.53,0.59]	chr6	550025	14	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.50447	3.33415	4.16383	0.0301162	0.00659193	0.130016	0.0454205
chr6	124975985	124976085	7381247	0	+	0.3	(0.29,0.33]	chr6	565864	40	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	3.18804	3.334025	3.48001	0.00126219	3.92193e-4	0.013837	0.00539186
chr6	37171307	37171399	7136262	0	+	0.652174	(0.59,1]	chr6	549937	3	CDS	CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	9	200	2	2.72962	3.3339600000000003	3.9383	2.99317e-4	3.52199e-7	0.00472028	1.639e-5
chr4	83075430	83075527	4928150	0	+	0.381443	(0.36,0.39]	chr4	405012	1	UTR3	UTR3:EXON_MRNA	COPS4	ENSG00000138663.9	ENST00000509093.5:ENST00000264389.7:ENST00000503682.5:ENST00000511653.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.84089	3.33351	3.82613	0.0128123	1.39565e-4	0.0719798	0.0023599
chr4	105485684	105485783	5026468	0	+	0.525253	(0.49,0.53]	chr4	409127	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	29	288	2	3.16386	3.33351	3.50316	2.23488e-8	1.92421e-8	1.68827e-6	1.36642e-6
chr12	98527885	98527948	13036651	0	+	0.333333	(0.33,0.36]	chr12	1014941	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9:ENST00000549938.5:ENST00000552831.1:ENST00000547214.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.7655	3.3335	3.9015	0.0175892	9.11613e-5	0.0918323	0.00168187
chr11	88337544	88337572	12533518	0	-	0.642857	(0.59,1]	chr11	972583	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	26	2	2.5215	3.333165	4.14483	0.032241	0.0183207	0.135671	0.0945306
chr19	47230230	47230329	17596411	0	-	0.606061	(0.59,1]	chr19	1481601	14	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.5215	3.333165	4.14483	0.032241	0.0183207	0.135671	0.0945306
chr4	102801453	102801506	5563971	0	-	0.377358	(0.36,0.39]	chr4	444367	1	CDS	CDS:UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.76778	3.333075	3.89837	0.00365703	9.25116e-5	0.0307238	0.00169222
chr1	112671220	112671319	411484	0	+	0.373737	(0.36,0.39]	chr1	40540	12	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	2.76213	3.3329199999999997	3.90371	1.84142e-4	3.75401e-7	0.00320813	1.72944e-5
chr1	244853559	244853657	1591269	0	-	0.397959	(0.39,0.42]	chr1	158388	34	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	2.76711	3.332795	3.89848	3.61954e-4	9.30194e-5	0.00544764	0.00169783
chr14	96566427	96566525	14476248	0	+	0.357143	(0.33,0.36]	chr14	1130890	15	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.53712	3.33276	4.1284	0.00766322	0.00407303	0.0503696	0.0324137
chrX	154781666	154781734	19279834	0	-	0.485294	(0.455,0.49]	chrX	1638735	2	CDS	CDS:UTR3:EXON_MRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000439370.5:ENST00000393531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	117	2	2.82961	3.332605	3.8356	2.1638e-4	1.00756e-8	0.00361336	7.80808e-7
chr7	92613551	92613650	8924975	0	-	0.50505	(0.49,0.53]	chr7	681136	88	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	2.65366	3.33221	4.01076	1.34476e-4	1.7263e-6	0.00229971	6.99335e-5
chr2	85053607	85053707	1922250	0	+	0.44	(0.42,0.455]	chr2	180789	3	UTR3	UTR3:EXON_MRNA	KCMF1	ENSG00000176407.18	ENST00000409785.9	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.81191	3.3317050000000004	3.8515	0.0119089	6.31824e-4	0.0686664	0.0078507
chr9	117180627	117180714	10824694	0	-	0.402299	(0.39,0.42]	chr9	820020	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	ASTN2:RPL10P3	ENSG00000148219.18:ENSG00000230734.1	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8:ENST00000431607.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	6	87	2	2.149	3.3316850000000002	4.51437	0.0149155	1.6043e-9	0.0812412	1.60009e-7
chr6	32180228	32180326	7118665	0	+	0.520408	(0.49,0.53]	chr6	547013	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	RNF5:MIR6833	ENSG00000204308.8:ENSG00000277264.1	ENST00000375094.4:ENST00000620680.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	59	2	2.81492	3.33162	3.84832	6.31846e-4	5.8066e-6	0.00837621	1.75335e-4
chr1	205790459	205790556	1462468	0	-	0.443299	(0.42,0.455]	chr1	147533	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	3.04003	3.33159	3.62315	7.68268e-4	4.234e-4	0.00916171	0.00613535
chr17	82602080	82602177	16384593	0	+	0.453608	(0.42,0.455]	chr17	1332764	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000529652.1:ENST00000624186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	3	35	2	3.04003	3.33159	3.62315	7.68268e-4	4.234e-4	0.00916171	0.00613535
chr1	37969408	37969464	950090	0	-	0.410714	(0.39,0.42]	chr1	100077	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.38186	3.33157	4.28128	0.00601449	0.00342611	0.0434483	0.0283456
chr1	193075819	193075892	631065	0	+	0.328767	(0.29,0.33]	chr1	64113	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1:ENST00000512587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.02337	3.331555	4.63974	0.0217631	4.81181e-4	0.103469	0.00677016
chr3	142311610	142311677	4486018	0	-	0.447761	(0.42,0.455]	chr3	372793	1	CDS	CDS:EXON_MRNA	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.81137	3.331435	3.8515	0.0120386	0.0119089	0.0700876	0.0686664
chr5	69115321	69115407	6019083	0	+	0.430233	(0.42,0.455]	chr5	471165	2	CDS	CDS:UTR5:EXON_MRNA	SLC30A5	ENSG00000145740.19	ENST00000621204.4:ENST00000396591.8:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.81137	3.331435	3.8515	0.0120386	0.0119089	0.0700876	0.0686664
chr6	169710114	169710214	8090111	0	-	0.44	(0.42,0.455]	chr6	617833	32	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.81137	3.331435	3.8515	0.0120386	0.0119089	0.0700876	0.0686664
chr11	112045137	112045230	12135929	0	+	0.55914	(0.53,0.59]	chr11	934804	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1:ENST00000680154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	33	2	3.1234	3.33135	3.5393	0.00390623	6.46017e-4	0.0322851	0.00799743
chr15	41279988	41280088	14885231	0	+	0.45	(0.42,0.455]	chr15	1169243	7	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.60504	3.331295	4.05755	0.00201537	1.23973e-6	0.0197874	4.7999e-5
chr7	76054829	76054913	8342279	0	+	0.547619	(0.53,0.59]	chr7	636218	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1:ENST00000492663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	136	2	3.07693	3.3309800000000003	3.58503	7.55612e-6	3.4333e-7	2.18445e-4	1.79956e-5
chr13	111594217	111594317	13899997	0	+	0.43	(0.42,0.455]	chr13	1089418	44	INTRON	INTRON	RP11-65D24.2	ENSG00000204398.5	ENST00000375713.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.7523	3.330755	3.90921	0.0153283	0.0121657	0.0828908	0.0701019
chr17	44397169	44397268	16558218	0	-	0.454545	(0.42,0.455]	chr17	1359519	20	UTR3	UTR3:EXON_MRNA	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.7523	3.330755	3.90921	0.0153283	0.0121657	0.0828908	0.0701019
chr2	173368616	173368711	2218771	0	+	0.452632	(0.42,0.455]	chr2	202933	11	UTR3	UTR3:EXON_MRNA	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.7523	3.330755	3.90921	0.0153283	0.0121657	0.0828908	0.0701019
chr3	14943774	14943873	4050034	0	-	0.454545	(0.42,0.455]	chr3	340108	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.7523	3.330755	3.90921	0.0153283	0.0121657	0.0828908	0.0701019
chr12	113388722	113388819	13101741	0	+	0.608247	(0.59,1]	chr12	1022448	2	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.99438	3.33071	3.66704	0.00776449	6.16458e-4	0.050813	0.00822794
chr2	174720713	174720812	2221026	0	+	0.363636	(0.36,0.39]	chr2	203052	5	INTRON	INTRON	AC018890.6	ENSG00000236449.2	ENST00000442996.1	lncRNA	lncRNA	lncRNA	lncRNA	20	162	2	3.18784	3.330425	3.47301	1.49068e-7	2.65373e-8	7.92306e-6	1.96627e-6
chr12	56599204	56599281	13351677	0	-	0.662338	(0.59,1]	chr12	1051600	2	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.11894	3.3303849999999997	4.54183	0.0293157	0.0070583	0.128478	0.0478044
chr2	96295487	96295572	2790494	0	-	0.623529	(0.59,1]	chr2	248807	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.11894	3.3303849999999997	4.54183	0.0293157	0.0070583	0.128478	0.0478044
chr7	75888163	75888249	8341280	0	+	0.604651	(0.59,1]	chr7	636082	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHBDD2	ENSG00000005486.17	ENST00000318622.8:ENST00000454791.1:ENST00000006777.11:ENST00000468304.1:ENST00000428119.1:ENST00000467406.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.11894	3.3303849999999997	4.54183	0.0293157	0.0070583	0.128478	0.0478044
chr11	33354160	33354259	11901856	0	+	0.333333	(0.33,0.36]	chr11	909310	7	UTR3	UTR3:EXON_MRNA	HIPK3	ENSG00000110422.12	ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.63456	3.3302950000000004	4.02603	0.0071776	0.00707461	0.048188	0.0478528
chr10	123163835	123163928	11299061	0	+	0.322581	(0.29,0.33]	chr10	861589	1	UTR3	UTR3:EXON_MRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.24226	3.33019	4.41812	0.0306054	0.00162106	0.130226	0.0161179
chr12	110019728	110019828	13084034	0	+	0.31	(0.29,0.33]	chr12	1020261	4	SS5_PROX	SS5_PROX:INTRON	ANKRD13A	ENSG00000076513.17	ENST00000553025.5:ENST00000261739.9:ENST00000550404.1:ENST00000547639.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	2.24226	3.33019	4.41812	0.0306054	0.00162106	0.130226	0.0161179
chr19	21728988	21729088	17511733	0	-	0.3	(0.29,0.33]	chr19	1469774	6	INTRON	INTRON	ZNF100	ENSG00000197020.11	ENST00000358296.11:ENST00000305570.10:ENST00000608416.5:ENST00000594401.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.24226	3.33019	4.41812	0.0306054	0.00162106	0.130226	0.0161179
chr1	89584594	89584691	345899	0	+	0.43299	(0.42,0.455]	chr1	34046	20	CDS	CDS:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.57051	3.3301550000000004	4.0898	0.0265466	0.00698074	0.120071	0.0473262
chr3	52696233	52696318	4184969	0	-	0.423529	(0.42,0.455]	chr3	353164	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000394783.7:ENST00000491606.5:ENST00000481643.5:ENST00000484163.5:ENST00000463827.1:ENST00000480080.1:ENST00000485899.1:ENST00000479553.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.57051	3.3301550000000004	4.0898	0.0265466	0.00698074	0.120071	0.0473262
chr9	36338467	36338566	10641096	0	-	0.424242	(0.42,0.455]	chr9	805481	22	UTR3	UTR3:EXON_MRNA	RNF38	ENSG00000137075.18	ENST00000353739.8:ENST00000259605.11:ENST00000377885.6:ENST00000357058.7:ENST00000350199.8:ENST00000611646.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.57051	3.3301550000000004	4.0898	0.0265466	0.00698074	0.120071	0.0473262
chr1	161422085	161422184	1333414	0	-	0.646465	(0.59,1]	chr1	136924	13	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	213	4459	2	3.13527	3.32991	3.52455	5.34351e-8	3.42812e-9	3.27005e-6	3.34599e-7
chr12	110730602	110730680	13539329	0	-	0.461538	(0.455,0.49]	chr12	1065124	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	7	42	2	2.15167	3.32986	4.50805	0.00161198	0.00122223	0.0160849	0.0135383
chrX	155943193	155943289	18924242	0	+	0.260417	[0,0.29]	chrX	1612670	12	UTR3	UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	2.56878	3.32986	4.09094	2.65849e-4	2.22824e-6	0.00396859	8.65895e-5
chr9	92264928	92265025	10737290	0	-	0.474227	(0.455,0.49]	chr9	812316	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	50	2	3.12843	3.329835	3.53124	0.00392855	6.91417e-6	0.0322851	2.03942e-4
chr17	68042173	68042263	16333801	0	+	0.455556	(0.455,0.49]	chr17	1325123	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	73	2	3.27489	3.3298	3.38471	2.00074e-5	1.06338e-5	5.35199e-4	2.90771e-4
chr1	116396665	116396734	423872	0	+	0.57971	(0.53,0.59]	chr1	41813	2	CDS	CDS:EXON_MRNA	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8	protein_coding	protein_coding	protein_coding	protein_coding	11	158	2	2.80766	3.3296599999999996	3.85166	2.30272e-4	5.13375e-9	0.00382267	4.34727e-7
chr1	2403606	2403703	7618	0	+	0.412371	(0.39,0.42]	chr1	1725	6	UTR3	UTR3:EXON_MRNA	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000605895.6:ENST00000378512.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr14	92161942	92162041	14458440	0	+	0.414141	(0.39,0.42]	chr14	1128971	3	UTR3	UTR3:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr15	90502142	90502239	15100817	0	+	0.402062	(0.39,0.42]	chr15	1188226	22	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr16	20682078	20682176	15581827	0	+	0.418367	(0.39,0.42]	chr16	1234654	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr17	59129366	59129458	16617504	0	-	0.391304	(0.39,0.42]	chr17	1365457	2	EXON_SMALL	EXON_SMALL:INTRON	SKA2:RNU2-58P	ENSG00000182628.13:ENSG00000252212.1	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1:ENST00000516403.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr18	9546989	9547089	17010739	0	-	0.42	(0.39,0.42]	chr18	1398020	3	UTR3	UTR3:EXON_MRNA	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000582594.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr22	30971779	30971876	18344801	0	+	0.402062	(0.39,0.42]	chr22	1559162	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000566220.2:ENST00000521091.6:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr9	2193427	2193525	10161418	0	+	0.397959	(0.39,0.42]	chr9	765163	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCA2	ENSG00000080503.24	ENST00000357248.8:ENST00000450198.6:ENST00000349721.8:ENST00000382194.6:ENST00000634760.1:ENST00000382203.5:ENST00000635739.1:ENST00000636157.1:ENST00000638139.1:ENST00000639760.2:ENST00000324954.10:ENST00000635590.1:ENST00000302401.8:ENST00000636367.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.71912	3.32954	3.93996	0.0163125	0.00841622	0.0866586	0.054565
chr16	28390519	28390582	15905088	0	-	0.460317	(0.455,0.49]	chr16	1273477	1	CDS	CDS:EXON_MRNA:PRIMIRNA	EIF3CL:MIR6862-1	ENSG00000205609.13:ENSG00000275429.1	ENST00000398944.7:ENST00000380876.5:ENST00000613016.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	8	87	2	2.48891	3.329485	4.17006	7.24922e-4	4.03133e-8	0.00911324	2.56372e-6
chr1	32680258	32680347	130417	0	+	0.280899	[0,0.29]	chr1	16120	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	56	2	2.36922	3.3294749999999995	4.28973	3.52719e-4	4.24282e-7	0.00494245	2.14164e-5
chr19	48911200	48911252	17367729	0	+	0.596154	(0.59,1]	chr19	1442124	2	CDS	CDS:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	138	2	2.22725	3.3293749999999998	4.4315	0.00535937	3.84288e-7	0.0406564	1.76177e-5
chr3	98579540	98579635	4319532	0	-	0.284211	[0,0.29]	chr3	360252	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	46	2	2.87662	3.32937	3.78212	3.32518e-4	3.31836e-5	0.00506816	7.33555e-4
chr17	61070058	61070152	16304045	0	+	0.489362	(0.455,0.49]	chr17	1322405	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	BCAS3:RPL23AP74	ENSG00000141376.23:ENSG00000227694.1	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000592827.1:ENST00000437246.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	4	42	2	2.84202	3.32913	3.81624	5.41187e-4	1.48205e-4	0.00689416	0.00269793
chr11	126266475	126266552	12645180	0	-	0.506494	(0.49,0.53]	chr11	981852	1	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	1.66773	3.3290349999999997	4.99034	0.0381288	1.6002e-4	0.149227	0.00286408
chr1	51765926	51765981	191459	0	+	0.4	(0.39,0.42]	chr1	24521	2	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	3.32811	3.328955	3.3298	0.00182819	0.00165391	0.0183913	0.0163614
chr12	120154969	120155040	13579289	0	-	0.577465	(0.53,0.59]	chr12	1068650	1	CDS	CDS:EXON_MRNA:PRIMIRNA	GCN1:MIR4498	ENSG00000089154.11:ENSG00000266704.1	ENST00000300648.7:ENST00000577599.1:ENST00000548132.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	2	35	2	2.7898	3.328945	3.86809	0.0128364	1.18973e-4	0.0719798	0.00207755
chr17	44075380	44075451	16234043	0	+	0.549296	(0.53,0.59]	chr17	1314327	2	CDS	CDS:UTR3:EXON_MRNA	G6PC3	ENSG00000141349.9	ENST00000269097.9:ENST00000588558.5:ENST00000585361.5:ENST00000591696.1:ENST00000590639.1:ENST00000590253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.7898	3.328945	3.86809	0.0128364	1.18973e-4	0.0719798	0.00207755
chr1	196737474	196737567	641464	0	+	0.376344	(0.36,0.39]	chr1	64510	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5:ENST00000470918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.62565	3.328925	4.0322	0.0219469	0.00588589	0.103959	0.0427941
chr10	92645455	92645548	11192193	0	+	0.376344	(0.36,0.39]	chr10	851087	2	CDS	CDS:UTR3:EXON_MRNA	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.62565	3.328925	4.0322	0.0219469	0.00588589	0.103959	0.0427941
chr14	77576840	77576915	14718019	0	-	0.373333	(0.36,0.39]	chr14	1153411	2	CDS	CDS:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7:ENST00000554901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.62565	3.328925	4.0322	0.0219469	0.00588589	0.103959	0.0427941
chr21	28935255	28935329	18201141	0	-	0.378378	(0.36,0.39]	chr21	1544502	3	CDS	CDS:EXON_MRNA	LTN1	ENSG00000198862.14	ENST00000614971.4:ENST00000389194.7:ENST00000361371.10	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.62565	3.328925	4.0322	0.0219469	0.00588589	0.103959	0.0427941
chr3	121770149	121770246	4410173	0	-	0.381443	(0.36,0.39]	chr3	365936	5	UTR3	UTR3:EXON_MRNA	IQCB1	ENSG00000173226.17	ENST00000310864.11:ENST00000393650.7:ENST00000349820.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.62565	3.328925	4.0322	0.0219469	0.00588589	0.103959	0.0427941
chr7	106268463	106268531	8978060	0	-	0.382353	(0.36,0.39]	chr7	687101	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000679461.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000680516.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000681297.1:ENST00000467730.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.62565	3.328925	4.0322	0.0219469	0.00588589	0.103959	0.0427941
chr7	5528364	5528448	8659483	0	-	0.583333	(0.53,0.59]	chr7	662116	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	440	2	3.07865	3.3288450000000003	3.57904	4.60383e-8	1.12656e-9	2.86616e-6	1.27056e-7
chr1	212100436	212100528	701687	0	+	0.521739	(0.49,0.53]	chr1	71173	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.93282	3.32871	3.7246	3.30011e-4	1.36405e-5	0.00504024	3.54667e-4
chr10	97751375	97751462	11214540	0	+	0.563218	(0.53,0.59]	chr10	853262	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5:ENST00000481956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.65894	3.328565	3.99819	0.0193255	0.0111308	0.0943643	0.0665375
chr19	48970628	48970709	17604736	0	-	0.54321	(0.53,0.59]	chr19	1483504	3	CDS	CDS:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8:ENST00000594220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.65894	3.328565	3.99819	0.0193255	0.0111308	0.0943643	0.0665375
chr3	15645192	15645290	3326202	0	+	0.540816	(0.53,0.59]	chr3	292932	10	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	BTD	ENSG00000169814.16	ENST00000427382.2:ENST00000449107.7:ENST00000673620.1:ENST00000303498.10:ENST00000672141.1:ENST00000643237.3:ENST00000672065.1:ENST00000672112.1:ENST00000646371.1:ENST00000672427.1:ENST00000673467.1:ENST00000672760.1:ENST00000437172.6:ENST00000383778.5:ENST00000672892.1:ENST00000671928.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.65894	3.328565	3.99819	0.0193255	0.0111308	0.0943643	0.0665375
chr3	184331538	184331606	3949327	0	+	0.573529	(0.53,0.59]	chr3	332487	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000422614.5:ENST00000460829.5:ENST00000475721.5:ENST00000464548.1:ENST00000478291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.65894	3.328565	3.99819	0.0193255	0.0111308	0.0943643	0.0665375
chr7	100153906	100153964	8425734	0	+	0.551724	(0.53,0.59]	chr7	642623	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	LAMTOR4	ENSG00000188186.10	ENST00000341942.9:ENST00000474141.5:ENST00000460732.5:ENST00000474831.5:ENST00000441173.1:ENST00000468582.5:ENST00000488241.5:ENST00000473459.5:ENST00000488338.2:ENST00000490633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	18	2	2.65894	3.328565	3.99819	0.0193255	0.0111308	0.0943643	0.0665375
chr11	73978278	73978378	12458826	0	-	0.56	(0.53,0.59]	chr11	968512	1	CDS_START	CDS_START:CDS:EXON_MRNA	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000539764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.35511	3.3285299999999998	4.30195	0.0445399	0.00421989	0.172163	0.0328662
chr12	53410997	53411068	12886177	0	+	0.577465	(0.53,0.59]	chr12	1002327	2	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.35511	3.3285299999999998	4.30195	0.0445399	0.00421989	0.172163	0.0328662
chr12	120129348	120129421	13579002	0	-	0.561644	(0.53,0.59]	chr12	1068525	2	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.35511	3.3285299999999998	4.30195	0.0445399	0.00421989	0.172163	0.0328662
chr19	15238277	15238376	17484913	0	-	0.545455	(0.53,0.59]	chr19	1465289	29	UTR3	UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.35511	3.3285299999999998	4.30195	0.0445399	0.00421989	0.172163	0.0328662
chr5	141320599	141320691	6875008	0	-	0.554348	(0.53,0.59]	chr5	526347	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TAF7	ENSG00000178913.8	ENST00000624699.1:ENST00000313368.8:ENST00000624761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.35511	3.3285299999999998	4.30195	0.0445399	0.00421989	0.172163	0.0328662
chr8	22613078	22613136	9226939	0	+	0.586207	(0.53,0.59]	chr8	706076	1	CDS	CDS:UTR5:EXON_MRNA	CCAR2	ENSG00000158941.16	ENST00000308511.8:ENST00000389279.7:ENST00000520861.5:ENST00000522599.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.35511	3.3285299999999998	4.30195	0.0445399	0.00421989	0.172163	0.0328662
chr11	125657346	125657446	12194936	0	+	0.34	(0.33,0.36]	chr11	940884	3	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.28792	3.3283500000000004	4.36878	0.0239159	0.0021194	0.112531	0.0198008
chr3	11557858	11557958	4037575	0	-	0.35	(0.33,0.36]	chr3	338890	19	UTR3	UTR3:EXON_MRNA	VGLL4	ENSG00000144560.15	ENST00000430365.7:ENST00000273038.7	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.28792	3.3283500000000004	4.36878	0.0239159	0.0021194	0.112531	0.0198008
chr7	44835584	44835658	8800379	0	-	0.513514	(0.49,0.53]	chr7	671373	1	CDS	CDS:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	3.18455	3.32811	3.47167	6.95049e-5	2.02852e-5	0.00147069	4.93215e-4
chr15	41365477	41365577	14886094	0	+	0.58	(0.53,0.59]	chr15	1169351	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	52	2	3.03385	3.327945	3.62204	4.3021e-4	1.81515e-4	0.00620274	0.00293332
chr12	68553586	68553684	13394547	0	-	0.520408	(0.49,0.53]	chr12	1055115	7	EXON_PSEUDO	EXON_PSEUDO	RPSAP12	ENSG00000240087.3	ENST00000435879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.92082	3.32788	3.73494	0.0189345	0.00827037	0.0934721	0.0534766
chr15	43190324	43190398	14895047	0	+	0.5	(0.49,0.53]	chr15	1170862	1	CDS	CDS:UTR3:EXON_MRNA	CCNDBP1	ENSG00000166946.14	ENST00000564630.5:ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000567434.5:ENST00000565296.5:ENST00000568507.5:ENST00000562553.5:ENST00000567690.5:ENST00000444658.7:ENST00000566882.5:ENST00000568936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.92082	3.32788	3.73494	0.0189345	0.00827037	0.0934721	0.0534766
chr2	15394226	15394287	2528416	0	-	0.52459	(0.49,0.53]	chr2	227424	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5:ENST00000429842.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.92082	3.32788	3.73494	0.0189345	0.00827037	0.0934721	0.0534766
chr22	19458070	19458139	18433654	0	-	0.492754	(0.49,0.53]	chr22	1570896	1	CDS	CDS:EXON_MRNA	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000466373.1:ENST00000447868.5:ENST00000421968.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	3.3222	3.3277200000000002	3.33324	0.00162947	2.96558e-5	0.0169972	6.71364e-4
chr1	226365953	226366052	1533066	0	-	0.434343	(0.42,0.455]	chr1	153433	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1:ENST00000677815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.70611	3.3277	3.94929	0.00397496	2.78395e-6	0.0322851	9.49154e-5
chrX	16853681	16853761	18971778	0	-	0.475	(0.455,0.49]	chrX	1615452	1	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.85172	3.32766	3.8036	0.010864	1.59194e-4	0.0643837	0.00263091
chr7	135674262	135674360	8553485	0	+	0.428571	(0.42,0.455]	chr7	652937	2	UTR3	UTR3:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	91	2	3.24682	3.327595	3.40837	1.74414e-5	1.83115e-6	4.7878e-4	6.65941e-5
chr7	130130944	130131043	8529034	0	+	0.424242	(0.42,0.455]	chr7	651128	3	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.90616	3.327375	3.74859	0.00162359	1.15347e-5	0.0169915	3.09736e-4
chr17	44319812	44319906	16557788	0	-	0.648936	(0.59,1]	chr17	1359328	3	UTR3	UTR3:EXON_MRNA	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000592372.5:ENST00000593166.1:ENST00000537904.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	379	2	3.01127	3.3272950000000003	3.64332	1.02051e-5	9.71228e-8	3.06833e-4	5.44683e-6
chr11	65997522	65997619	12423529	0	-	0.43299	(0.42,0.455]	chr11	964316	11	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.19078	3.327135	3.46349	0.00310864	9.0025e-4	0.0274272	0.0102618
chr12	110346059	110346118	13085909	0	+	0.542373	(0.53,0.59]	chr12	1020550	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	139	2	3.12323	3.32708	3.53093	7.41975e-6	8.98466e-7	2.3596e-4	3.65081e-5
chrX	141906306	141906406	18883529	0	+	0.49	(0.455,0.49]	chrX	1608997	10	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.83792	3.32708	3.81624	0.0110512	1.48205e-4	0.0665375	0.00269793
chr1	145996500	145996579	1270291	0	-	0.455696	(0.455,0.49]	chr1	125553	4	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	10	84	2	2.32398	3.3268649999999997	4.32975	4.1144e-4	1.27857e-7	0.00559233	7.7505e-6
chr6	7481937	7482031	7587941	0	-	0.553191	(0.53,0.59]	chr6	578851	10	EXON_PSEUDO	EXON_PSEUDO	HNRNPLP1	ENSG00000233503.1	ENST00000421896.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	45	2	2.47	3.3268649999999997	4.18373	0.0089333	1.85867e-5	0.0567495	4.56627e-4
chr4	169713150	169713222	5218120	0	+	0.486111	(0.455,0.49]	chr4	420929	2	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.84079	3.32677	3.81275	0.0138827	0.00201021	0.0760883	0.0190112
chr16	88894182	88894282	16075902	0	-	0.44	(0.42,0.455]	chr16	1291988	13	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000562719.5:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.25867	3.326675	4.39468	0.0025407	0.00240483	0.0233955	0.0217482
chr3	98515923	98516015	4318875	0	-	0.358696	(0.33,0.36]	chr3	360204	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000513873.1:ENST00000510545.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.97606	3.326675	3.67729	0.00871774	1.89665e-5	0.0558165	4.64808e-4
chr8	43127127	43127226	9308545	0	+	0.343434	(0.33,0.36]	chr8	712880	44	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674676.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.00765	3.32659	4.64553	0.0287001	6.69086e-4	0.128757	0.00820018
chr3	177021129	177021228	4593438	0	-	0.333333	(0.33,0.36]	chr3	379622	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	90	2	3.31345	3.3264899999999997	3.33953	1.26992e-5	3.55061e-7	3.67844e-4	1.64926e-5
chr10	17229707	17229799	10938771	0	+	0.565217	(0.53,0.59]	chr10	832983	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000497849.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	3.1611	3.326345	3.49159	8.49658e-5	6.29049e-5	0.00159594	0.00135218
chr1	10298871	10298965	38793	0	+	0.574468	(0.53,0.59]	chr1	4585	13	INTRON	INTRON	KIF1B	ENSG00000054523.19	ENST00000676179.1:ENST00000377093.9:ENST00000263934.10:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr10	1015824	1015896	10898860	0	+	0.583333	(0.53,0.59]	chr10	829393	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000483839.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr16	56833310	56833406	15680452	0	+	0.5625	(0.53,0.59]	chr16	1246655	2	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5:ENST00000563437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr19	6734244	6734307	17444035	0	-	0.571429	(0.53,0.59]	chr19	1457454	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	GPR108	ENSG00000125734.15	ENST00000264080.11:ENST00000595908.5:ENST00000430424.8:ENST00000597706.5:ENST00000597298.5:ENST00000598052.5:ENST00000601716.1:ENST00000595108.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr19	40741933	40742002	17567332	0	-	0.565217	(0.53,0.59]	chr19	1476585	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000596940.5:ENST00000598485.6:ENST00000596809.5:ENST00000597507.1:ENST00000598352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr20	62311161	62311234	18029070	0	-	0.575342	(0.53,0.59]	chr20	1528539	1	CDS	CDS:EXON_MRNA	LAMA5	ENSG00000130702.15	ENST00000370691.6:ENST00000252999.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr20	64027602	64027669	17867783	0	+	0.567164	(0.53,0.59]	chr20	1511428	1	CDS	CDS:EXON_MRNA	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.34461	3.3261849999999997	4.30776	0.0457008	0.00407289	0.168044	0.0324137
chr1	45693993	45694082	175260	0	+	0.561798	(0.53,0.59]	chr1	22796	2	UTR3	UTR3:EXON_MRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr1	117623846	117623944	428409	0	+	0.571429	(0.53,0.59]	chr1	42278	10	CDS	CDS:EXON_MRNA	TENT5C	ENSG00000183508.5	ENST00000369448.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr11	65654377	65654477	12422542	0	-	0.58	(0.53,0.59]	chr11	964046	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RELA	ENSG00000173039.19	ENST00000615805.4:ENST00000612991.4:ENST00000406246.8:ENST00000525693.5:ENST00000308639.13:ENST00000526283.6:ENST00000531484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr14	67692933	67692992	14683510	0	-	0.542373	(0.53,0.59]	chr14	1149654	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000428130.6:ENST00000554731.1:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1:ENST00000556692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr17	7260486	7260536	16429306	0	-	0.56	(0.53,0.59]	chr17	1339387	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP1-4G17.5:CLDN7	ENSG00000262302.1:ENSG00000181885.18	ENST00000577138.1:ENST00000360325.11:ENST00000538261.7:ENST00000397317.8:ENST00000574070.5:ENST00000575313.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr17	12993758	12993831	16449486	0	-	0.561644	(0.53,0.59]	chr17	1342795	2	CDS	CDS:EXON_MRNA	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000487229.6:ENST00000465825.5:ENST00000426905.7:ENST00000584650.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr19	35637454	35637554	17305939	0	+	0.56	(0.53,0.59]	chr19	1431222	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RBM42	ENSG00000126254.12	ENST00000588161.5:ENST00000262633.9:ENST00000592202.5:ENST00000586618.5:ENST00000589559.5:ENST00000589871.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr6	32121056	32121124	7664462	0	-	0.544118	(0.53,0.59]	chr6	586014	2	CDS	CDS:EXON_MRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000485314.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.64837	3.32615	4.00393	0.0199467	0.0108084	0.0984041	0.064368
chr15	58633195	58633277	15311042	0	-	0.439024	(0.42,0.455]	chr15	1208313	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	2.59462	3.326085	4.05755	0.0062772	1.23973e-6	0.0445415	4.7999e-5
chr1	225855877	225855940	1530638	0	-	0.47619	(0.455,0.49]	chr1	153045	1	CDS	CDS:EXON_MRNA	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.9967	3.3260750000000003	3.65545	0.00650423	3.50134e-4	0.0454205	0.0049086
chr3	31551148	31551248	3391630	0	+	0.32	(0.29,0.33]	chr3	295011	171	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	3.31653	3.325985	3.33544	0.00261621	0.0016889	0.0238929	0.0165476
chr3	13371833	13371932	4046774	0	-	0.636364	(0.59,1]	chr3	339660	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	98	2	2.77109	3.32582	3.88055	0.00331425	1.27063e-5	0.0285314	3.34717e-4
chr12	22065492	22065583	12783526	0	+	0.318681	(0.29,0.33]	chr12	992950	3	UTR3	UTR3:EXON_MRNA	CMAS	ENSG00000111726.13	ENST00000229329.7:ENST00000534981.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.34203	3.3258149999999995	4.3096	0.010113	6.80571e-6	0.0626311	2.01083e-4
chr10	79512837	79512925	11148977	0	+	0.397727	(0.39,0.42]	chr10	847457	2	CDS	CDS:EXON_MRNA	EIF5AL1	ENSG00000253626.4	ENST00000520547.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.0503	3.325805	3.60131	0.00570576	4.60576e-4	0.0424438	0.00611208
chr12	123345491	123345570	13595601	0	-	0.392405	(0.39,0.42]	chr12	1071125	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.0503	3.325805	3.60131	0.00570576	4.60576e-4	0.0424438	0.00611208
chr10	73760712	73760780	11115752	0	+	0.617647	(0.59,1]	chr10	845855	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000634508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.61074	3.3256	4.04046	0.025486	9.42839e-5	0.117089	0.0017195000000000001
chr18	3255918	3255997	16729740	0	+	0.405063	(0.39,0.42]	chr18	1380105	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000536605.1:ENST00000580887.5:ENST00000578038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	2.91028	3.3255600000000003	3.74084	5.0472e-5	1.54033e-6	0.0010363	6.33581e-5
chr4	176328230	176328330	5242223	0	+	0.4	(0.39,0.42]	chr4	421868	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2:ENST00000507678.5:ENST00000507001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	62	2	2.4030300000000002	3.3255500000000002	4.24807	0.00255585	2.68001e-7	0.0234576	1.29826e-5
chr14	100277699	100277799	14487339	0	+	0.26	[0,0.29]	chr14	1131912	2	UTR3	UTR3:EXON_MRNA:PRIMIRNA	YY1:MIR6764	ENSG00000100811.14:ENSG00000283840.1	ENST00000262238.10:ENST00000554804.1:ENST00000651219.1:ENST00000623799.1:ENST00000554579.1:ENST00000636393.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	4	31	2	2.3458	3.3254650000000003	4.30513	0.0116272	7.08235e-6	0.0685835	2.0848e-4
chr16	67871107	67871204	15712239	0	+	0.329897	(0.29,0.33]	chr16	1250701	3	UTR3	UTR3:EXON_MRNA	NUTF2	ENSG00000102898.12	ENST00000219169.9:ENST00000569436.6:ENST00000568396.2:ENST00000587481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	62	2	2.81255	3.325455	3.83836	5.05307e-5	1.2308e-6	0.00103724	5.25619e-5
chr1	43384360	43384449	968602	0	-	0.483146	(0.455,0.49]	chr1	102090	6	UTR3	UTR3:EXON_MRNA	MED8	ENSG00000159479.17	ENST00000290663.10:ENST00000372457.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr1	65425302	65425378	251537	0	+	0.473684	(0.455,0.49]	chr1	28761	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000497874.5:ENST00000488747.5:ENST00000484243.1:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr11	62694605	62694705	12410342	0	-	0.48	(0.455,0.49]	chr11	961441	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BSCL2:HNRNPUL2-BSCL2	ENSG00000168000.16:ENSG00000234857.2	ENST00000683892.1:ENST00000684475.1:ENST00000684285.1:ENST00000682555.1:ENST00000682262.1:ENST00000684115.1:ENST00000683025.1:ENST00000449636.6:ENST00000683846.1:ENST00000403734.2:ENST00000679883.1:ENST00000405837.5:ENST00000683296.1:ENST00000360796.10:ENST00000278893.11:ENST00000684067.1:ENST00000684258.1:ENST00000683494.1:ENST00000682003.1:ENST00000524862.6:ENST00000407022.7:ENST00000403550.5:ENST00000301781.10:ENST00000421906.5:ENST00000682794.1:ENST00000683368.1:ENST00000682223.1:ENST00000684609.1:ENST00000684720.1:ENST00000682644.1:ENST00000412351.2:ENST00000532115.5:ENST00000448568.6:ENST00000526426.1:ENST00000531524.5:ENST00000537604.5:ENST00000530900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr11	118504867	118504966	12158964	0	+	0.464646	(0.455,0.49]	chr11	937104	26	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr11	125578194	125578257	12194146	0	+	0.47619	(0.455,0.49]	chr11	940647	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000524723.5:ENST00000278903.11:ENST00000531636.5:ENST00000527842.6:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr16	68296626	68296718	15715827	0	+	0.48913	(0.455,0.49]	chr16	1251179	1	CDS	CDS:UTR3:EXON_MRNA	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5:ENST00000567325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr17	29286182	29286278	16491133	0	-	0.46875	(0.455,0.49]	chr17	1348893	3	CDS	CDS:EXON_MRNA:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr22	44151482	44151551	18390722	0	+	0.478261	(0.455,0.49]	chr22	1566014	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PARVB:RP4-671O14.6	ENSG00000188677.15:ENSG00000280434.1	ENST00000406477.7:ENST00000338758.12:ENST00000619710.4:ENST00000404989.1:ENST00000624919.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr3	48693797	48693885	4169488	0	-	0.477273	(0.455,0.49]	chr3	349935	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	IP6K2	ENSG00000068745.15	ENST00000328631.10:ENST00000479914.5:ENST00000449563.5:ENST00000413654.5:ENST00000443853.5:ENST00000437427.5:ENST00000412850.5:ENST00000454335.5:ENST00000340879.8:ENST00000432678.6:ENST00000433104.2:ENST00000416707.1:ENST00000431721.6:ENST00000449610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr8	143993319	143993415	9649818	0	+	0.489583	(0.455,0.49]	chr8	731413	6	UTR3	UTR3:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chrX	53210766	53210857	19075396	0	-	0.472527	(0.455,0.49]	chrX	1622287	2	CDS	CDS:EXON_MRNA	KDM5C	ENSG00000126012.12	ENST00000452825.7:ENST00000375401.8:ENST00000404049.7:ENST00000375379.7:ENST00000375383.7:ENST00000497100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chrX	63350352	63350444	19088587	0	-	0.478261	(0.455,0.49]	chrX	1624067	3	CDS	CDS:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	16	2	2.83792	3.325335	3.81275	0.0138827	0.0110512	0.0760883	0.0665375
chr19	14515060	14515158	17480905	0	-	0.387755	(0.36,0.39]	chr19	1464580	4	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.48922	3.3253250000000003	4.16143	0.0110399	0.00486719	0.0652374	0.0366328
chr2	219219855	219219953	3191272	0	-	0.571429	(0.53,0.59]	chr2	280847	13	UTR3	UTR3:EXON_MRNA	RP11-803J6.1:ATG9A	ENSG00000284820.1:ENSG00000198925.12	ENST00000446716.5:ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	51	2	2.504	3.3252249999999997	4.14645	0.00279409	2.32261e-5	0.0241702	6.06413e-4
chr3	76436527	76436627	3565413	0	+	0.39	(0.36,0.39]	chr3	309339	12	INTRON	INTRON	ROBO2	ENSG00000185008.17	ENST00000487694.7:ENST00000602589.5:ENST00000475034.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.6181	3.32515	4.0322	0.00588589	0.00176908	0.0427941	0.0172426
chrX	66260099	66260180	18718241	0	+	0.555556	(0.53,0.59]	chrX	1597064	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	43	2	3.17542	3.324805	3.47419	8.75273e-4	3.78824e-4	0.0106963	0.00525548
chr2	96297449	96297536	2790517	0	-	0.54023	(0.53,0.59]	chr2	248821	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.78129	3.32476	4.86823	0.0173127	4.35895e-4	0.0914071	0.00623608
chr17	59215002	59215081	16293061	0	+	0.379747	(0.36,0.39]	chr17	1321399	1	UTR3	UTR3:EXON_MRNA	CTD-2510F5.6:SMG8	ENSG00000265303.1:ENSG00000167447.13	ENST00000577660.1:ENST00000543872.6:ENST00000300917.10:ENST00000582469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.06292	3.3246450000000003	3.58637	0.00499846	5.84377e-4	0.0370021	0.00793559
chrX	134473411	134473465	18863702	0	+	0.388889	(0.36,0.39]	chrX	1607366	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	3.06292	3.3246450000000003	3.58637	0.00499846	5.84377e-4	0.0370021	0.00793559
chr1	222627962	222628059	723944	0	+	0.340206	(0.33,0.36]	chr1	72962	5	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.31026	3.32461	4.33896	0.0519897	0.00182033	0.18423900000000001	0.0183913
chr17	28635012	28635112	16486632	0	-	0.49	(0.455,0.49]	chr17	1348028	6	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.24913	3.32461	3.40009	0.00239443	0.00120619	0.0225356	0.0129255
chr22	42797290	42797389	18524994	0	-	0.474747	(0.455,0.49]	chr22	1582037	9	UTR3	UTR3:EXON_MRNA	ARFGAP3	ENSG00000242247.11	ENST00000263245.10	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.24913	3.32461	3.40009	0.00239443	0.00120619	0.0225356	0.0129255
chr6	32828361	32828460	7667126	0	-	0.353535	(0.33,0.36]	chr6	586771	31	UTR3	UTR3:EXON_MRNA:INTRON	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.31026	3.32461	4.33896	0.0519897	0.00182033	0.18423900000000001	0.0183913
chr1	1804448	1804548	829863	0	-	0.51	(0.49,0.53]	chr1	82958	1	CDS_START	CDS_START:CDS:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000471354.1:ENST00000439272.6:ENST00000434686.6:ENST00000437146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.69746	3.32453	3.9516	0.00380414	6.96459e-5	0.0317723	0.0013446
chr15	90502045	90502142	15100816	0	+	0.42268	(0.42,0.455]	chr15	1188226	21	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	3.23839	3.3244	3.41041	2.92986e-4	1.00299e-4	0.00464297	0.00180803
chr6	27838142	27838239	7649622	0	-	0.659794	(0.59,1]	chr6	582816	2	CDS	CDS:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	3.30708	3.324395	3.34171	0.00252451	0.00234977	0.0226777	0.0222173
chr21	29060540	29060600	18201980	0	-	0.416667	(0.39,0.42]	chr21	1544712	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000432178.5:ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	126	2	2.92795	3.324345	3.72074	1.57355e-6	3.2887e-7	5.85583e-5	1.73684e-5
chr6	53269169	53269226	7740174	0	-	0.54386	(0.53,0.59]	chr6	594338	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	3.06793	3.3241199999999997	3.58031	3.64147e-5	1.78012e-5	8.79008e-4	4.43767e-4
chr13	114324818	114324915	13913394	0	+	0.505155	(0.49,0.53]	chr13	1091008	10	CDS	CDS:EXON_MRNA:INTRON	CHAMP1	ENSG00000198824.7	ENST00000646956.1:ENST00000361283.4:ENST00000646155.1:ENST00000643483.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.13501	3.324065	4.51312	0.0287874	0.00156636	0.128869	0.0156889
chr15	69444789	69444873	15002314	0	+	0.5	(0.49,0.53]	chr15	1179257	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	KIF23	ENSG00000137807.16	ENST00000260363.9:ENST00000643966.1:ENST00000395392.6:ENST00000352331.8:ENST00000561089.5:ENST00000647715.1:ENST00000679126.1:ENST00000559279.6:ENST00000558585.5:ENST00000558303.5:ENST00000560125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.13501	3.324065	4.51312	0.0287874	0.00156636	0.128869	0.0156889
chr10	28614625	28614685	10990576	0	+	0.516667	(0.49,0.53]	chr10	835899	2	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.01464	3.32401	4.63338	0.0205094	9.56909e-4	0.0991175	0.010724
chr11	4106061	4106142	11774126	0	+	0.469136	(0.455,0.49]	chr11	900947	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RRM1	ENSG00000167325.15	ENST00000532710.5:ENST00000300738.10:ENST00000532170.5:ENST00000526865.5:ENST00000533349.5:ENST00000526350.5:ENST00000530368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	2.99697	3.32388	3.65079	9.57891e-4	3.61776e-4	0.0107247	0.00544764
chr9	131259055	131259153	10870347	0	-	0.418367	(0.39,0.42]	chr9	824566	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	1.40371	3.3237	5.24369	0.0464207	4.15285e-5	0.17732	8.8376e-4
chr1	44762601	44762658	174024	0	+	0.508772	(0.49,0.53]	chr1	22396	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000423289.1:ENST00000472235.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	46	2	1.75327	3.3236600000000003	4.89405	0.00664443	2.57983e-4	0.0462182	0.00419998
chr2	210431444	210431542	3145306	0	-	0.377551	(0.36,0.39]	chr2	277990	3	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	3.10506	3.3236499999999998	3.54224	7.38785e-4	4.51643e-5	0.00924579	9.43703e-4
chr2	157736545	157736643	2952011	0	-	0.346939	(0.33,0.36]	chr2	262097	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACVR1	ENSG00000115170.16	ENST00000682025.1:ENST00000683487.1:ENST00000682300.1:ENST00000263640.7:ENST00000683441.1:ENST00000684595.1:ENST00000682690.1:ENST00000434821.7:ENST00000683404.1:ENST00000683426.1:ENST00000684104.1:ENST00000684567.1:ENST00000681995.1:ENST00000683514.1:ENST00000409283.6:ENST00000684348.1:ENST00000683820.1:ENST00000672582.1:ENST00000673324.1:ENST00000424669.6:ENST00000539637.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.51797	3.323185	4.1284	0.0303594	0.00407303	0.130016	0.0324137
chr10	17708863	17708951	10940133	0	+	0.590909	(0.59,1]	chr10	833139	2	CDS	CDS:EXON_MRNA	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.70472	3.32301	4.9413	0.0236159	0.00191468	0.109018	0.0190905
chr7	138576372	138576445	8563459	0	+	0.534247	(0.53,0.59]	chr7	653297	1	CDS	CDS:EXON_MRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.56002	3.323005	4.08599	0.00634904	3.38473e-5	0.0446708	7.45971e-4
chr15	90467449	90467520	15100431	0	+	0.408451	(0.39,0.42]	chr15	1188115	1	CDS	CDS:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.88836	3.322945	3.75753	0.0102432	2.04026e-4	0.062872	0.00320361
chr6	7286119	7286219	7586853	0	-	0.4	(0.39,0.42]	chr6	578692	51	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.88836	3.322945	3.75753	0.0102432	2.04026e-4	0.062872	0.00320361
chr1	174421703	174421803	553371	0	+	0.4	(0.39,0.42]	chr1	58646	272	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.70591	3.3228299999999997	3.93975	0.0185716	0.0105893	0.0932453	0.0644466
chr2	128190434	128190533	2060516	0	+	0.40404	(0.39,0.42]	chr2	193397	8	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.70591	3.3228299999999997	3.93975	0.0185716	0.0105893	0.0932453	0.0644466
chr7	30083467	30083567	8201165	0	+	0.42	(0.39,0.42]	chr7	625614	48	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHA8	ENSG00000106086.20	ENST00000622102.4:ENST00000258679.11:ENST00000649443.1:ENST00000449726.6:ENST00000396257.6:ENST00000396259.5:ENST00000440706.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.70591	3.3228299999999997	3.93975	0.0185716	0.0105893	0.0932453	0.0644466
chr7	135577947	135578024	8552596	0	+	0.402597	(0.39,0.42]	chr7	652707	3	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.70591	3.3228299999999997	3.93975	0.0185716	0.0105893	0.0932453	0.0644466
chr19	41861168	41861225	17336793	0	+	0.526316	(0.49,0.53]	chr19	1437260	2	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000598466.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	234	2	2.87291	3.32268	3.77245	2.63064e-6	4.9997e-10	9.05095e-5	6.24299e-8
chr12	113389594	113389691	13101750	0	+	0.453608	(0.42,0.455]	chr12	1022448	11	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.73398	3.32265	3.91132	3.96345e-4	3.67157e-6	0.00587914	1.1967e-4
chr6	43056375	43056445	7706903	0	-	0.528571	(0.49,0.53]	chr6	591203	2	CDS	CDS:EXON_MRNA:INTRON	RP1-20C7.7:MRPL2	ENSG00000288564.1:ENSG00000112651.12	ENST00000673761.1:ENST00000388752.8:ENST00000230413.9:ENST00000489623.1:ENST00000470667.5:ENST00000491898.5:ENST00000480286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.11892	3.322645	3.52637	0.00398244	6.68602e-4	0.0322851	0.00820018
chr9	133348217	133348243	10503262	0	+	0.653846	(0.59,1]	chr9	794210	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000496554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	687	2	2.37325	3.3226199999999997	4.27199	1.73196e-4	1.4193e-10	0.00304512	1.84764e-8
chr17	4944916	4945016	16094340	0	+	0.56	(0.53,0.59]	chr17	1294897	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000572382.5:ENST00000576965.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.30943	3.32256	3.33569	0.0018255	1.57373e-4	0.0183913	0.00260854
chr16	88726795	88726876	16074539	0	-	0.654321	(0.59,1]	chr16	1291692	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.97802	3.32253	3.66704	0.00133365	6.16458e-4	0.0139317	0.00822794
chr17	76563311	76563408	16359182	0	+	0.402062	(0.39,0.42]	chr17	1328581	3	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	2.8388	3.322515	3.80623	6.72604e-4	7.67155e-6	0.00873144	2.20857e-4
chr19	54180967	54181050	17627731	0	-	0.73494	(0.59,1]	chr19	1488029	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2:ENST00000414665.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	167	2	3.08563	3.322495	3.55936	3.59087e-5	1.76198e-5	7.85154e-4	4.83551e-4
chr18	31546181	31546273	16809161	0	+	0.51087	(0.49,0.53]	chr18	1386480	6	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.21702	3.3224600000000004	4.4279	0.00959574	0.00196987	0.0603269	0.0193972
chr12	132825796	132825893	13163185	0	+	0.515464	(0.49,0.53]	chr12	1029271	2	EXON_PSEUDO	EXON_PSEUDO	RPS11P5	ENSG00000232888.4	ENST00000488441.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	23	2	2.70307	3.32242	3.94177	0.0104929	0.00363585	0.063428	0.0298137
chr3	47662333	47662419	4162516	0	-	0.511628	(0.49,0.53]	chr3	348362	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	38	2	1.56402	3.322315	5.08061	0.0228477	1.00361e-4	0.105592	0.00196575
chr3	195780973	195781072	4661076	0	-	0.636364	(0.59,1]	chr3	385270	23	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	53	2	2.9891200000000002	3.322105	3.65509	0.00823979	5.95213e-4	0.0540283	0.00746384
chr17	22524223	22524311	16169260	0	+	0.477273	(0.455,0.49]	chr17	1304369	2	UTR3	UTR3:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	19	197	2	3.08565	3.32181	3.55797	3.08634e-6	3.07354e-9	1.14585e-4	2.79756e-7
chr19	46727691	46727791	17595242	0	-	0.55	(0.53,0.59]	chr19	1481311	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000595357.5:ENST00000594287.6:ENST00000601631.6:ENST00000594357.6:ENST00000600358.7:ENST00000435164.6:ENST00000602223.5:ENST00000599231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	3.02047	3.32159	3.62271	6.25942e-5	2.78569e-5	0.00124286	7.05707e-4
chr22	30977822	30977920	18344865	0	+	0.418367	(0.39,0.42]	chr22	1559168	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	3.23057	3.321485	3.4124	3.34829e-4	9.95835e-5	0.00509483	0.00180006
chr2	159748803	159748903	2163039	0	+	0.35	(0.33,0.36]	chr2	199192	11	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.47163	3.321425	4.17122	0.0129725	1.72402e-5	0.0724783	4.33531e-4
chr3	155828209	155828309	4538112	0	-	0.34	(0.33,0.36]	chr3	375989	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	2.47163	3.321425	4.17122	0.0129725	1.72402e-5	0.0724783	4.33531e-4
chr6	10723077	10723159	7048537	0	+	0.743902	(0.59,1]	chr6	539737	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	3.17616	3.32138	3.4666	0.00434232	0.00133574	0.0339139	0.0139317
chr11	86000642	86000710	12526153	0	-	0.455882	(0.455,0.49]	chr11	972216	1	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	147	2	2.71203	3.3212200000000003	3.93041	9.62492e-5	1.53105e-9	0.00191065	1.53537e-7
chr11	35810755	35810855	11910504	0	+	0.48	(0.455,0.49]	chr11	910190	45	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.00242	3.3211	4.63978	0.0074882	6.94032e-4	0.0495195	0.00876781
chr5	168616351	168616443	6369404	0	+	0.576087	(0.53,0.59]	chr5	494770	1	EXON_PSEUDO	EXON_PSEUDO	RPL10P9	ENSG00000233913.7	ENST00000522551.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	203	2	2.83807	3.32102	3.80397	4.0787e-5	2.01227e-9	9.64741e-4	1.94688e-7
chr1	228457067	228457156	1539738	0	-	0.41573	(0.39,0.42]	chr1	154183	2	UTR3	UTR3:EXON_MRNA	H2AW	ENSG00000181218.5	ENST00000366695.3	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.49701	3.3208900000000003	4.14477	0.0339607	2.09513e-5	0.141431	5.04211e-4
chr2	135870305	135870361	2898220	0	-	0.446429	(0.42,0.455]	chr2	258564	2	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.84101	3.3208249999999997	4.80064	0.0352234	3.0479e-4	0.142054	0.00472028
chr20	50894415	50894512	18006327	0	-	0.43299	(0.42,0.455]	chr20	1526245	5	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	1.84101	3.3208249999999997	4.80064	0.0352234	3.0479e-4	0.142054	0.00472028
chr11	125584411	125584502	12194218	0	+	0.505495	(0.49,0.53]	chr11	940681	9	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000278903.11	protein_coding	protein_coding	protein_coding	protein_coding	9	85	2	2.3537	3.320755	4.28781	5.19401e-4	2.05323e-7	0.00725048	1.04036e-5
chr21	33528166	33528240	18220581	0	-	0.486486	(0.455,0.49]	chr21	1546384	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	2.35972	3.32071	4.2817	0.0058634	2.07199e-7	0.0427941	1.04734e-5
chr1	202941572	202941672	1453186	0	-	0.54	(0.53,0.59]	chr1	146052	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10:ENST00000367254.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	98	2	2.85662	3.32056	3.7845	4.88685e-4	2.32736e-7	0.00686067	1.1519e-5
chr19	1038970	1039068	17190855	0	+	0.510204	(0.49,0.53]	chr19	1411408	12	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.26641	3.3203199999999997	4.37423	0.0190546	4.77238e-6	0.093872	1.49327e-4
chr4	112788181	112788281	5601613	0	-	0.49	(0.455,0.49]	chr4	446907	2	EXON_PSEUDO	EXON_PSEUDO	RPL7AP30	ENSG00000241741.1	ENST00000482859.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	44	2	2.26324	3.3200849999999997	4.37693	0.00868189	4.5365e-6	0.0558093	1.42727e-4
chr19	7640515	7640613	17217846	0	+	0.540816	(0.53,0.59]	chr19	1416908	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	36	2	2.65894	3.320045	3.98115	0.0193255	6.28226e-5	0.0943643	0.00124286
chr3	185917319	185917418	4628252	0	-	0.333333	(0.33,0.36]	chr3	382241	29	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	3.29141	3.319865	3.34832	5.86683e-5	2.58174e-5	0.00129243	5.98209e-4
chr1	162566258	162566348	507609	0	+	0.522222	(0.49,0.53]	chr1	54775	2	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.87268	3.319855	3.76703	0.00175078	1.02216e-5	0.0180053	2.82175e-4
chr2	222908772	222908872	2405993	0	+	0.28	[0,0.29]	chr2	216555	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	33	2	2.16074	3.319845	4.47895	0.0222978	2.02456e-6	0.105845	7.23108e-5
chr5	131393690	131393790	6221767	0	+	0.36	(0.33,0.36]	chr5	484085	27	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.63456	3.31973	4.0049	0.00707461	1.77926e-6	0.0478528	6.4851e-5
chr5	65174302	65174402	6613658	0	-	0.62	(0.59,1]	chr5	511193	9	INTRON	INTRON	ADAMTS6	ENSG00000049192.15	ENST00000381055.8:ENST00000381052.8:ENST00000314351.9:ENST00000417396.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	130	2	2.16424	3.3196950000000003	4.47515	0.0123032	2.85796e-7	0.0705839	1.37303e-5
chr12	68731662	68731719	12940195	0	+	0.491228	(0.49,0.53]	chr12	1008482	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000538993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.51671	3.31967	4.12263	0.00768763	0.00591451	0.050396	0.0427941
chr12	120138322	120138415	13579103	0	-	0.526882	(0.49,0.53]	chr12	1068570	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000547263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.51671	3.31967	4.12263	0.00768763	0.00591451	0.050396	0.0427941
chr3	136327204	136327255	3763129	0	+	0.490196	(0.49,0.53]	chr3	321887	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.51671	3.31967	4.12263	0.00768763	0.00591451	0.050396	0.0427941
chr3	170145422	170145477	4574075	0	-	0.509091	(0.49,0.53]	chr3	378587	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.51671	3.31967	4.12263	0.00768763	0.00591451	0.050396	0.0427941
chr17	7501023	7501108	16105162	0	+	0.482353	(0.455,0.49]	chr17	1296734	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	3.09445	3.3195300000000003	3.54461	6.1765e-4	4.40117e-5	0.00822794	9.24938e-4
chr6	31816335	31816431	7116666	0	+	0.635417	(0.59,1]	chr6	546204	6	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	15	300	2	2.51813	3.319525	4.12092	1.53526e-4	3.28265e-8	0.00279042	2.15416e-6
chr1	153816351	153816430	1298880	0	-	0.506329	(0.49,0.53]	chr1	130496	2	CDS	CDS:EXON_MRNA	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.56183	3.31951	4.07719	0.0261296	0.0074411	0.118976	0.0492519
chr12	132639211	132639298	13623748	0	-	0.517241	(0.49,0.53]	chr12	1073188	2	CDS	CDS:UTR3:EXON_MRNA	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000434528.4:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.56183	3.31951	4.07719	0.0261296	0.0074411	0.118976	0.0492519
chr15	43398108	43398179	14895704	0	+	0.492958	(0.49,0.53]	chr15	1171049	2	CDS	CDS:EXON_MRNA	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000561691.5:ENST00000563963.1:ENST00000562053.1:ENST00000563147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.56183	3.31951	4.07719	0.0261296	0.0074411	0.118976	0.0492519
chr2	47804901	47804964	1788254	0	+	0.492063	(0.49,0.53]	chr2	172680	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.56183	3.31951	4.07719	0.0261296	0.0074411	0.118976	0.0492519
chr7	16685931	16685955	8148981	0	+	0.5	(0.49,0.53]	chr7	622137	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:INTRON	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.56183	3.31951	4.07719	0.0261296	0.0074411	0.118976	0.0492519
chrX	54560602	54560701	18704354	0	+	0.50505	(0.49,0.53]	chrX	1596125	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000674229.1:ENST00000674225.1:ENST00000674178.1:ENST00000336470.8:ENST00000360845.3:ENST00000674238.1:ENST00000674420.1:ENST00000674311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.56183	3.31951	4.07719	0.0261296	0.0074411	0.118976	0.0492519
chr7	128769265	128769363	8521849	0	+	0.5	(0.49,0.53]	chr7	650198	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	12	135	2	3.01991	3.319395	3.61888	2.36197e-5	3.33202e-8	6.15843e-4	2.1802e-6
chrX	154781599	154781666	19279833	0	-	0.447761	(0.42,0.455]	chrX	1638735	1	CDS	CDS:UTR3:EXON_MRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000491955.5:ENST00000439370.5:ENST00000393531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	188	2	3.1748	3.319295	3.46379	7.67421e-7	5.01624e-8	3.53615e-5	3.09365e-6
chr10	28595954	28596041	10990383	0	+	0.390805	(0.39,0.42]	chr10	835874	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	3.27904	3.31912	3.3592	3.95466e-5	2.70719e-5	8.52304e-4	6.90257e-4
chr7	12688354	12688434	8136648	0	+	0.35	(0.33,0.36]	chr7	621814	1	CDS	CDS:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396662.5:ENST00000356797.7:ENST00000396664.2:ENST00000439721.1:ENST00000396663.2:ENST00000651779.1:ENST00000404894.1	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.5098	3.3190999999999997	4.1284	0.00407303	3.52363e-4	0.0324137	0.00493767
chr6	37174664	37174759	7136300	0	+	0.505263	(0.49,0.53]	chr6	549953	7	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	42	451	2	3.11519	3.3189	3.52261	1.07493e-7	1.46394e-10	6.69423e-6	1.90008e-8
chr1	29033168	29033245	120753	0	+	0.454545	(0.42,0.455]	chr1	14642	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	2.54082	3.318715	4.09661	1.61532e-4	2.79795e-5	0.00265627	7.07527e-4
chr19	50414902	50414990	17376134	0	+	0.704545	(0.59,1]	chr19	1444513	2	CDS	CDS:UTR3:EXON_MRNA	POLD1	ENSG00000062822.15	ENST00000600859.5:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000593407.5:ENST00000593981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.19052	3.3186150000000003	4.44671	0.0237927	0.00931497	0.109413	0.0586162
chr9	133153816	133153905	10879522	0	-	0.595506	(0.59,1]	chr9	825595	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.19052	3.3186150000000003	4.44671	0.0237927	0.00931497	0.109413	0.0586162
chr11	62665311	62665332	11973619	0	+	0.571429	(0.53,0.59]	chr11	917815	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CSKMT	ENSG00000214756.8	ENST00000398922.6:ENST00000532971.2:ENST00000529868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	1.76849	3.3183599999999998	4.86823	0.0420665	4.35895e-4	0.158792	0.00623608
chr1	91683738	91683838	1163998	0	-	0.67	(0.59,1]	chr1	114885	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	28	2	2.92097	3.318315	3.71566	0.0487443	0.0102634	0.175495	0.0628742
chr19	45178118	45178218	17586952	0	-	0.65	(0.59,1]	chr19	1479803	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TRAPPC6A	ENSG00000007255.10	ENST00000006275.8:ENST00000588062.5:ENST00000585934.1:ENST00000592647.1:ENST00000587818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	28	2	2.92097	3.318315	3.71566	0.0487443	0.0102634	0.175495	0.0628742
chr5	10411332	10411400	5875298	0	+	0.338235	(0.33,0.36]	chr5	462007	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	74	2	2.7655	3.318205	3.87091	0.0175892	1.95045e-8	0.0918323	1.37715e-6
chr17	1655349	1655446	16401316	0	-	0.505155	(0.49,0.53]	chr17	1334846	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.78773	3.318025	3.84832	0.00257389	5.8066e-6	0.0235767	1.75335e-4
chr1	149842501	149842598	1286945	0	-	0.670103	(0.59,1]	chr1	127834	2	CDS	CDS:EXON_MRNA	H2AC18	ENSG00000203812.2	ENST00000369159.2	protein_coding	protein_coding	protein_coding	protein_coding	16	311	2	2.931	3.317985	3.70497	9.79048e-6	6.54398e-7	2.98194e-4	2.79139e-5
chr3	52692871	52692958	3479463	0	+	0.45977	(0.455,0.49]	chr3	305053	1	CDS	CDS:EXON_MRNA	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000484022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.89975	3.31782	3.73589	3.94125e-4	2.30579e-4	0.00541075	0.00382267
chr22	21451266	21451364	18302377	0	+	0.428571	(0.42,0.455]	chr22	1554129	47	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	9	91	2	3.27	3.31773	3.36546	1.15661e-5	1.77317e-6	3.41751e-4	6.47642e-5
chr5	32403905	32404001	6519397	0	-	0.5	(0.49,0.53]	chr5	505020	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.95291	3.317685	3.68246	0.00119735	3.06313e-4	0.0134293	0.00442973
chr22	20951113	20951210	18300194	0	+	0.474227	(0.455,0.49]	chr22	1553647	14	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	150	2	3.2697	3.31762	3.36554	3.70782e-6	4.98345e-8	1.31913e-4	3.07505e-6
chr5	130990162	130990250	6219897	0	+	0.329545	(0.29,0.33]	chr5	484005	4	EXON_PSEUDO	EXON_PSEUDO	RP11-114H7.1	ENSG00000244192.1	ENST00000498453.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	56	2	2.62211	3.3176	4.01309	0.00310562	1.46447e-7	0.0274272	7.79207e-6
chr1	154584416	154584513	1303561	0	-	0.371134	(0.36,0.39]	chr1	131361	29	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	3.12317	3.317545	3.51192	3.13585e-5	1.03824e-5	6.98935e-4	3.10912e-4
chr7	108573164	108573253	8457662	0	+	0.348315	(0.33,0.36]	chr7	646358	4	CDS	CDS:EXON_MRNA:INTRON	DNAJB9	ENSG00000128590.5	ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.47163	3.3174900000000003	4.16335	0.0129725	5.09889e-7	0.0724783	2.25036e-5
chr6	160090038	160090138	7528814	0	+	0.47	(0.455,0.49]	chr6	574945	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000475834.2:ENST00000677628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.27152	3.3172949999999997	4.36307	0.00786769	0.00218641	0.0514287	0.0208941
chr2	241352438	241352537	2467897	0	+	0.323232	(0.29,0.33]	chr2	223257	6	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000451310.1	protein_coding	protein_coding	protein_coding	protein_coding	12	83	2	3.11409	3.31717	3.52025	4.70821e-6	4.75597e-7	1.62899e-4	2.1148e-5
chr20	55074643	55074742	17831409	0	+	0.606061	(0.59,1]	chr20	1507730	1	EXON_PSEUDO	EXON_PSEUDO	RPL12P4	ENSG00000185834.10	ENST00000432629.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	81	2	2.03921	3.31717	4.59513	0.0371471	4.29216e-6	0.151849	1.3648e-4
chr19	50799278	50799357	17611881	0	-	0.531646	(0.53,0.59]	chr19	1485213	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C19orf48	ENSG00000167747.15	ENST00000641834.1:ENST00000598463.5:ENST00000596655.1:ENST00000596287.5:ENST00000597705.5:ENST00000597493.5:ENST00000593287.5:ENST00000600373.5:ENST00000601267.5:ENST00000595794.5:ENST00000596554.5:ENST00000599004.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	4	51	2	2.45052	3.317125	4.18373	0.00355092	1.85867e-5	0.0300049	4.56627e-4
chr19	811482	811576	17189589	0	+	0.234043	[0,0.29]	chr19	1411055	8	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.0001	3.31708	4.63406	0.0227161	6.16807e-7	0.107633	2.65059e-5
chr1	150968141	150968201	1291398	0	-	0.633333	(0.59,1]	chr1	128696	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000460664.5:ENST00000368949.8:ENST00000361419.9:ENST00000558062.5:ENST00000559020.1:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	126	2	3.09397	3.31697	3.53997	9.75839e-5	7.50782e-5	0.00193292	0.0014304
chr3	128813913	128814011	3729275	0	+	0.357143	(0.33,0.36]	chr3	318662	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000482525.5:ENST00000675497.1:ENST00000674589.1:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	35	2	3.0318	3.31689	3.60198	6.01238e-4	1.96415e-4	0.00811676	0.00311664
chr8	47820793	47820868	9815963	0	-	0.453333	(0.42,0.455]	chr8	742567	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	1.96397	3.316845	4.66972	0.0138503	5.82077e-9	0.0759947	5.293e-7
chr1	23088098	23088198	893411	0	-	0.56	(0.53,0.59]	chr1	92759	42	UTR3	UTR3:EXON_MRNA	LUZP1	ENSG00000169641.13	ENST00000418342.5:ENST00000302291.8	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.02054	3.3167400000000002	3.61294	0.0310038	0.00577011	0.130016	0.0426551
chr1	181088766	181088834	587418	0	+	0.573529	(0.53,0.59]	chr1	60872	2	UTR5	UTR5:EXON_MRNA	IER5	ENSG00000162783.11	ENST00000367577.7	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.02054	3.3167400000000002	3.61294	0.0310038	0.00577011	0.130016	0.0426551
chr6	144200705	144200792	8006762	0	-	0.436782	(0.42,0.455]	chr6	611847	4	EXON_PSEUDO	EXON_PSEUDO	TPT1P4	ENSG00000217027.1	ENST00000403538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	87	2	2.44756	3.3167400000000002	4.18592	9.46189e-4	3.60468e-8	0.0113687	2.33149e-6
chr1	21832606	21832706	890716	0	-	0.64	(0.59,1]	chr1	92259	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.39747	3.316385	4.2353	0.0430221	0.0165254	0.161091	0.0873033
chr12	8949578	8949669	13197326	0	-	0.648352	(0.59,1]	chr12	1033956	2	UTR5	UTR5:EXON_MRNA	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000536844.5:ENST00000544245.1:ENST00000540837.1:ENST00000543845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.39747	3.316385	4.2353	0.0430221	0.0165254	0.161091	0.0873033
chr16	29796892	29796992	15626655	0	+	0.6	(0.59,1]	chr16	1239258	1	CDS	CDS:UTR5:EXON_MRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000569636.6:ENST00000160827.9:ENST00000570173.5:ENST00000400751.9:ENST00000569382.2:ENST00000563666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.39747	3.316385	4.2353	0.0430221	0.0165254	0.161091	0.0873033
chr19	18435012	18435064	17499311	0	-	0.711538	(0.59,1]	chr19	1468096	1	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582287.6:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.39747	3.316385	4.2353	0.0430221	0.0165254	0.161091	0.0873033
chr2	27039105	27039164	1690657	0	+	0.610169	(0.59,1]	chr2	165355	2	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000444135.5:ENST00000434544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.39747	3.316385	4.2353	0.0430221	0.0165254	0.161091	0.0873033
chr7	119689658	119689758	9031943	0	-	0.34	(0.33,0.36]	chr7	689719	1892	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	3.15976	3.3163799999999997	3.473	0.00437542	8.77304e-4	0.0340502	0.0101202
chr1	109984764	109984860	401531	0	+	0.666667	(0.59,1]	chr1	39251	1	UTR5	UTR5:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.28778	3.316325	4.34487	0.0556537	0.0123678	0.191528	0.0705839
chr12	6510133	6510221	12713318	0	+	0.397727	(0.39,0.42]	chr12	986516	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPD2	ENSG00000010292.13	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	49	2	3.03794	3.31629	3.59464	1.79125e-4	3.6617e-5	0.00289872	8.82767e-4
chr1	58658905	58659004	1055179	0	-	0.373737	(0.36,0.39]	chr1	108146	43	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	3.29474	3.31628	3.33782	0.00194306	3.59965e-5	0.0185233	8.71532e-4
chrX	66266771	66266871	18718310	0	+	0.29	[0,0.29]	chrX	1597078	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	3.13014	3.3161899999999997	3.50224	7.95529e-4	2.66868e-4	0.009356	0.0043067
chr11	47469415	47469514	12386802	0	-	0.343434	(0.33,0.36]	chr11	956932	36	UTR3	UTR3:EXON_MRNA:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.90872	3.316185	3.72365	4.00944e-4	3.19155e-4	0.00548902	0.00491578
chr2	170966530	170966630	2206513	0	+	0.42	(0.39,0.42]	chr2	201863	5	UTR3	UTR3:EXON_MRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.74243	3.3161750000000003	3.88992	0.00369167	4.22388e-6	0.030936	1.34652e-4
chr19	41331114	41331177	17568488	0	-	0.746032	(0.59,1]	chr19	1476878	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	3.17616	3.3159799999999997	3.4558	0.00434232	1.35447e-4	0.0339139	0.00231202
chr20	47209598	47209694	17993103	0	-	0.28125	[0,0.29]	chr20	1524924	5	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.84979	3.3159549999999998	3.78212	6.05262e-4	3.32518e-4	0.00756349	0.00506816
chr20	57356445	57356538	17836628	0	+	0.548387	(0.53,0.59]	chr20	1508280	1	CDS	CDS:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000527947.5:ENST00000395841.7:ENST00000492498.5:ENST00000411894.5:ENST00000429339.5:ENST00000395840.6:ENST00000452119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	3.02054	3.315935	3.61133	0.00577011	4.55298e-4	0.0426551	0.00608573
chr5	32417647	32417719	6519538	0	-	0.541667	(0.53,0.59]	chr5	505039	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	3.02054	3.315935	3.61133	0.00577011	4.55298e-4	0.0426551	0.00608573
chr17	8553954	8554018	16433798	0	-	0.390625	(0.39,0.42]	chr17	1340786	1	CDS	CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8:ENST00000459986.1:ENST00000472728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.30055	3.315925	4.3313	0.0070645	0.00209984	0.0477419	0.0204266
chr5	75351512	75351602	6037066	0	+	0.466667	(0.455,0.49]	chr5	473627	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000504466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	75	2	2.0008	3.315775	4.63075	0.0129467	1.02236e-8	0.0724783	7.89931e-7
chr15	72347685	72347758	15369469	0	-	0.465753	(0.455,0.49]	chr15	1214428	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-106M3.2:HEXA	ENSG00000260729.1:ENSG00000213614.11	ENST00000379915.4:ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682653.1:ENST00000567411.5:ENST00000683681.1:ENST00000566304.5:ENST00000683860.1:ENST00000567027.6:ENST00000684415.1:ENST00000684520.1:ENST00000682657.1:ENST00000682061.1:ENST00000682177.1:ENST00000683884.1:ENST00000568777.5:ENST00000683003.1:ENST00000567159.5:ENST00000684041.1:ENST00000563762.5:ENST00000566672.5:ENST00000569410.5:ENST00000683742.1:ENST00000683228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	45	2	2.69053	3.31557	3.94061	0.0182983	2.93826e-6	0.0925808	9.91141e-5
chr16	88808376	88808474	15807320	0	+	0.714286	(0.59,1]	chr16	1258141	2	UTR3	UTR3:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	3.09455	3.315515	3.53648	0.00107706	7.92671e-4	0.0124943	0.00933379
chr22	21623344	21623442	18303195	0	+	0.510204	(0.49,0.53]	chr22	1554195	18	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	1.78308	3.31526	4.84744	0.0425234	3.70203e-4	0.167547	0.00515475
chr22	38738586	38738670	18511586	0	-	0.547619	(0.53,0.59]	chr22	1580309	1	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000455125.1:ENST00000470642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.35511	3.315185	4.27526	0.0445399	1.03921e-5	0.172163	2.85526e-4
chr2	10128899	10128952	1629041	0	+	0.396226	(0.39,0.42]	chr2	161733	2	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000485717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.86895	3.31518	3.76141	0.00177945	2.14058e-4	0.0172974	0.00359478
chr13	27256272	27256334	13657877	0	+	0.403226	(0.39,0.42]	chr13	1076411	2	CDS	CDS:UTR3:EXON_MRNA	RPL21	ENSG00000122026.11	ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000485756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	121	2	3.28718	3.315125	3.34307	7.33136e-6	1.6756e-7	2.33612e-4	8.73301e-6
chr10	28608257	28608344	10990507	0	+	0.551724	(0.53,0.59]	chr10	835881	1	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	98	2	3.06793	3.3151	3.56227	1.78012e-5	5.9444e-6	4.43767e-4	1.96056e-4
chr7	43648614	43648712	8794014	0	-	0.326531	(0.29,0.33]	chr7	670419	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000459713.1:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	2.38576	3.3148150000000003	4.24387	0.0439193	0.00263476	0.163572	0.0239118
chr2	118109630	118109728	2023574	0	+	0.367347	(0.36,0.39]	chr2	191265	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	INSIG2	ENSG00000125629.15	ENST00000245787.9:ENST00000485520.5:ENST00000471186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.20444	3.3147349999999998	4.42503	0.0237257	0.00133228	0.109365	0.0144372
chr8	73551620	73551716	9890294	0	-	0.364583	(0.36,0.39]	chr8	747728	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.20444	3.3147349999999998	4.42503	0.0237257	0.00133228	0.109365	0.0144372
chr6	112617389	112617487	7901824	0	-	0.510204	(0.49,0.53]	chr6	605298	8	EXON_PSEUDO	EXON_PSEUDO	PA2G4P5	ENSG00000225580.2	ENST00000418595.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	37	2	2.8681	3.314545	3.76099	0.00175299	2.00194e-4	0.0171299	0.0034021
chr1	28743595	28743692	118418	0	+	0.494845	(0.49,0.53]	chr1	14542	12	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	2.94403	3.3145100000000003	3.68499	0.00122634	2.9991e-4	0.0130695	0.00472028
chr20	44906000	44906096	17799146	0	+	0.395833	(0.39,0.42]	chr20	1504691	1	CDS	CDS:UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	83	2	3.0565	3.31447	3.57244	1.93131e-4	3.12704e-7	0.0033147	1.48129e-5
chr5	146511301	146511395	6281606	0	+	0.297872	(0.29,0.33]	chr5	489665	8	UTR3	UTR3:EXON_MRNA	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000506524.5:ENST00000511077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.92065	3.314265	3.70788	0.0117842	1.58728e-5	0.0686664	4.0383e-4
chr16	4340318	4340405	15835537	0	-	0.574713	(0.53,0.59]	chr16	1264157	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAM16:CORO7-PAM16	ENSG00000217930.8:ENSG00000103426.12	ENST00000577031.5:ENST00000573236.5:ENST00000575334.5:ENST00000572467.5:ENST00000576217.1:ENST00000318059.8:ENST00000571986.5:ENST00000573614.5:ENST00000575636.5:ENST00000571941.5:ENST00000575848.5:ENST00000573553.5:ENST00000573450.5:ENST00000571178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr18	49331863	49331934	17118150	0	-	0.549296	(0.53,0.59]	chr18	1405440	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5:ENST00000578396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr19	55391553	55391639	17396216	0	+	0.581395	(0.53,0.59]	chr19	1448686	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000560055.5:ENST00000426763.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr2	10440823	10440868	2509378	0	-	0.555556	(0.53,0.59]	chr2	226471	1	CDS	CDS:EXON_MRNA	ODC1	ENSG00000115758.13	ENST00000234111.9:ENST00000405333.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr2	96828633	96828700	1944182	0	+	0.552239	(0.53,0.59]	chr2	184244	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4:ENST00000465224.5:ENST00000480035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr21	33511389	33511458	18220405	0	-	0.57971	(0.53,0.59]	chr21	1546343	3	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr5	173323214	173323314	6984369	0	-	0.57	(0.53,0.59]	chr5	533813	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	STC2	ENSG00000113739.11	ENST00000265087.9:ENST00000520593.1:ENST00000520648.1:ENST00000518455.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr7	4762563	4762663	8109584	0	+	0.58	(0.53,0.59]	chr7	619657	2	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	19	2	3.0099	3.3142300000000002	3.61856	0.0303021	0.00600486	0.129773	0.042887
chr6	26124625	26124687	7101135	0	+	0.516129	(0.49,0.53]	chr6	542795	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000377791.4:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	93	2	3.16986	3.314165	3.45847	3.95698e-4	3.21719e-7	0.00587341	1.51945e-5
chr19	40458460	40458545	17566593	0	-	0.658824	(0.59,1]	chr19	1476401	5	CDS	CDS:EXON_MRNA	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	152	2	2.90034	3.314145	3.72795	2.17692e-4	6.41132e-6	0.00336773	2.09046e-4
chr12	55727249	55727339	13347096	0	-	0.622222	(0.59,1]	chr12	1050352	2	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CD63	ENSG00000135404.12	ENST00000257857.9:ENST00000420846.7:ENST00000552692.5:ENST00000546939.5:ENST00000549117.5:ENST00000550050.5:ENST00000552754.5:ENST00000550776.5:ENST00000552164.5:ENST00000551173.5:ENST00000546457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	110	2	3.17191	3.313855	3.4558	1.5194e-4	1.35447e-4	0.00276208	0.00231202
chrX	141907903	141908003	18883545	0	+	0.53	(0.49,0.53]	chrX	1608997	26	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.1011	3.3137350000000003	3.52637	6.68602e-4	5.69237e-4	0.00820018	0.00778538
chr4	48857288	48857365	4827510	0	+	0.402597	(0.39,0.42]	chr4	397849	2	CDS	CDS:EXON_MRNA:INTRON	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000506801.5:ENST00000503016.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000508329.1:ENST00000502972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	58	2	2.77539	3.3137299999999996	3.85207	1.28587e-4	6.04118e-5	0.00241206	0.00120998
chr6	17611516	17611615	7070318	0	+	0.363636	(0.36,0.39]	chr6	541144	33	UTR3	UTR3:EXON_MRNA	FAM8A1	ENSG00000137414.6	ENST00000259963.4	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.89391	3.313685	4.73346	0.0121625	3.2963e-4	0.0701019	0.00504024
chr16	173600	173655	15480738	0	+	0.745455	(0.59,1]	chr16	1224200	1	UTR3	UTR3:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	495	2	3.02011	3.31351	3.60691	1.2122e-6	2.71152e-7	4.70323e-5	1.47414e-5
chr1	16684429	16684529	871895	0	-	0.25	[0,0.29]	chr1	89112	18	INTRON	INTRON	RP5-875O13.7	ENSG00000280114.1	ENST00000624828.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	24	2	2.99144	3.31316	3.63488	0.00112713	7.12896e-4	0.0122637	0.00897774
chr17	77499530	77499627	16364490	0	+	0.701031	(0.59,1]	chr17	1329211	10	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.61074	3.313095	4.01545	0.025486	0.0251889	0.117089	0.114168
chr2	65088202	65088299	2708069	0	-	0.371134	(0.36,0.39]	chr2	241346	15	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	83	2	3.0454	3.31305	3.5807	7.17459e-5	2.82304e-7	0.00151448	1.35731e-5
chr3	64018598	64018652	4241393	0	-	0.351852	(0.33,0.36]	chr3	356552	1	CDS	CDS:EXON_MRNA	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5:ENST00000497315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	3.02394	3.3129600000000003	3.60198	8.89743e-4	6.01238e-4	0.0102057	0.00811676
chr19	41306465	41306565	17334332	0	+	0.57	(0.53,0.59]	chr19	1436800	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	2.85662	3.31288	3.76914	4.88685e-4	1.07544e-5	0.00686067	2.9314e-4
chr7	127701242	127701323	8515430	0	+	0.45679	(0.455,0.49]	chr7	649678	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000483503.5:ENST00000492772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	2.76399	3.31276	3.86153	8.75629e-4	5.21014e-6	0.0106963	1.60138e-4
chr1	67411107	67411207	1079117	0	-	0.36	(0.33,0.36]	chr1	110137	34	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.07736	3.31266	4.54796	0.0442037	1.2206e-6	0.172163	4.73214e-5
chr6	112356325	112356422	7901687	0	-	0.57732000000000006	(0.53,0.59]	chr6	605281	6	EXON_PSEUDO	EXON_PSEUDO	RPSAP45	ENSG00000219773.1	ENST00000401872.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	104	2	2.9246	3.312435	3.70027	1.13965e-4	4.6117e-7	0.00217669	2.06661e-5
chr20	58910015	58910081	17841245	0	+	0.454545	(0.42,0.455]	chr20	1508837	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5:ENST00000683632.1:ENST00000684644.1:ENST00000684761.1:ENST00000682590.1:ENST00000684466.1:ENST00000682092.1:ENST00000682986.1:ENST00000475610.2:ENST00000682411.1:ENST00000683932.1:ENST00000682917.1:ENST00000682680.1:ENST00000476196.5:ENST00000494081.5:ENST00000656419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	134	2	1.95091	3.31243	4.67395	0.00692158	4.10108e-11	0.0472369	6.17252e-9
chr16	70529508	70529588	15729715	0	+	0.375	(0.36,0.39]	chr16	1252892	1	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	SF3B3:SNORD111B	ENSG00000189091.13:ENSG00000221514.1	ENST00000302516.10:ENST00000408587.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding	5	45	2	2.94781	3.31236	3.67691	3.10006e-4	2.38454e-5	0.0044733	6.18922e-4
chr6	69699117	69699192	7787985	0	-	0.4	(0.39,0.42]	chr6	596307	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000651675.1:ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	34	2	1.51702	3.312315	5.10761	0.0277255	5.12039e-5	0.122886	0.00114668
chr11	18480466	18480545	12302529	0	-	0.417722	(0.39,0.42]	chr11	951464	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000580814.1:ENST00000584526.1:ENST00000251968.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.13132	3.3122800000000003	4.49324	0.02908	0.00108192	0.127648	0.0124943
chr17	67726459	67726553	16331885	0	+	0.414894	(0.39,0.42]	chr17	1324848	1	CDS	CDS:UTR3:EXON_MRNA	NOL11	ENSG00000130935.10	ENST00000253247.9:ENST00000581375.5:ENST00000580833.1:ENST00000580914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.13132	3.3122800000000003	4.49324	0.02908	0.00108192	0.127648	0.0124943
chr6	43614755	43614855	7159307	0	+	0.4	(0.39,0.42]	chr6	553362	3	UTR3	UTR3:EXON_MRNA	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.13132	3.3122800000000003	4.49324	0.02908	0.00108192	0.127648	0.0124943
chr11	119047733	119047818	12626448	0	-	0.541176	(0.53,0.59]	chr11	979757	1	CDS	CDS:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000527738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	55	2	3.30943	3.31221	3.31499	0.0018255	3.217e-5	0.0183913	7.12922e-4
chr2	43918087	43918151	2623236	0	-	0.328125	(0.29,0.33]	chr2	236141	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1:ENST00000684705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	43	2	2.45373	3.312195	4.17066	0.0156405	4.83539e-7	0.084273700000000007	2.14792e-5
chr12	54350617	54350712	12892160	0	+	0.463158	(0.455,0.49]	chr12	1003028	2	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000550171.5:ENST00000455864.6:ENST00000549116.5:ENST00000551779.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	143	2	3.17581	3.312185	3.44856	8.64409e-7	2.8233e-7	3.91779e-5	1.35731e-5
chr1	112647209	112647273	411234	0	+	0.421875	(0.42,0.455]	chr1	40495	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	63	2	3.24412	3.31187	3.37962	1.2947e-4	1.33004e-5	0.00242147	3.48736e-4
chr7	133035377	133035470	9078010	0	-	0.516129	(0.49,0.53]	chr7	693067	6	EXON_PSEUDO	EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	protein_coding	miRNA:protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	10	95	2	2.90258	3.3118600000000002	3.72114	1.38104e-5	7.54542e-6	3.94563e-4	2.1828e-4
chr16	75647639	75647665	16039292	0	-	0.653846	(0.59,1]	chr16	1288368	1	UTR5	UTR5:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000568682.5:ENST00000570215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	34	2	1.96394	3.31181	4.65968	0.0453144	0.00413632	0.174798	0.0324998
chr19	52219777	52219864	17382228	0	+	0.643678	(0.59,1]	chr19	1445774	2	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	1.96394	3.31181	4.65968	0.0453144	0.00413632	0.174798	0.0324998
chr16	70573202	70573301	15730194	0	+	0.343434	(0.33,0.36]	chr16	1253031	15	UTR3	UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.28465	3.311805	4.33896	0.0188404	0.00182033	0.0958835	0.0183913
chr6	166328275	166328357	8077636	0	-	0.353659	(0.33,0.36]	chr6	616669	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1:ENST00000494682.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.28465	3.311805	4.33896	0.0188404	0.00182033	0.0958835	0.0183913
chr8	102649457	102649553	9984316	0	-	0.333333	(0.33,0.36]	chr8	753402	8	UTR3	UTR3:EXON_MRNA	KLF10	ENSG00000155090.15	ENST00000285407.11:ENST00000395884.3	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.28465	3.311805	4.33896	0.0188404	0.00182033	0.0958835	0.0183913
chr16	18807311	18807409	15877199	0	-	0.346939	(0.33,0.36]	chr16	1269332	26	UTR3	UTR3:EXON_MRNA	SMG1	ENSG00000157106.17	ENST00000446231.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.93784	3.31172	4.6856	0.0278501	3.92435e-4	0.123353	0.00583618
chr12	56113465	56113561	12898100	0	+	0.302083	(0.29,0.33]	chr12	1004172	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	8	51	2	2.86174	3.31159	3.76144	6.77341e-5	1.09291e-5	0.0014391	2.96269e-4
chr1	145993850	145993886	1270250	0	-	0.5	(0.49,0.53]	chr1	125528	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1:ENST00000486597.1:ENST00000425134.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	49	2	2.19518	3.31154	4.4279	0.00196987	8.75969e-4	0.0193972	0.0101202
chr6	33202262	33202344	7121286	0	+	0.512195	(0.49,0.53]	chr6	547388	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8:ENST00000463972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	105	2	1.9035	3.311375	4.71925	0.0295204	2.48804e-10	0.129773	3.05215e-8
chr12	57234018	57234118	12902150	0	+	0.48	(0.455,0.49]	chr12	1005214	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1:ENST00000556798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	3.12843	3.3113349999999997	3.49424	0.00392855	9.02087e-6	0.0322851	2.53429e-4
chr2	49878807	49878899	1798715	0	+	0.423913	(0.42,0.455]	chr2	173042	3	EXON_PSEUDO	EXON_PSEUDO	RPL7P13	ENSG00000234253.1	ENST00000415103.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.07474	3.31133	4.54792	0.0338882	9.66045e-4	0.139841	0.0115185
chrX	53396226	53396303	19076793	0	-	0.454545	(0.42,0.455]	chrX	1622520	1	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1:ENST00000470241.2	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.07474	3.31133	4.54792	0.0338882	9.66045e-4	0.139841	0.0115185
chr5	111192860	111192951	6760670	0	-	0.417582	(0.39,0.42]	chr5	519120	8	EXON_PSEUDO	EXON_PSEUDO	RPS3AP21	ENSG00000214784.4	ENST00000461022.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	34	2	3.29451	3.3113099999999998	3.32811	0.00182819	1.98354e-4	0.0183913	0.00314412
chr11	77616596	77616695	12473508	0	-	0.434343	(0.42,0.455]	chr11	970289	22	UTR3	UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	134	2	3.28576	3.311025	3.33629	5.70977e-7	4.02405e-7	2.75177e-5	1.83927e-5
chr1	214644752	214644850	710469	0	+	0.418367	(0.39,0.42]	chr1	71911	3	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.19588	3.31099	3.4261	0.00321212	0.00107164	0.0280721	0.0118238
chr14	21459112	21459205	14522256	0	-	0.408602	(0.39,0.42]	chr14	1137600	2	UTR3	UTR3:EXON_MRNA	RAB2B	ENSG00000129472.15	ENST00000397762.6	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.19588	3.31099	3.4261	0.00321212	0.00107164	0.0280721	0.0118238
chr3	139366705	139366775	4479559	0	-	0.414286	(0.39,0.42]	chr3	372221	3	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	3.19588	3.31099	3.4261	0.00321212	0.00107164	0.0280721	0.0118238
chr7	6402446	6402541	8114062	0	+	0.357895	(0.33,0.36]	chr7	620430	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000495499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	64	2	2.79427	3.310905	3.82754	1.77242e-4	7.00235e-7	0.0030964400000000002	2.94691e-5
chr19	12799858	12799923	17470976	0	-	0.630769	(0.59,1]	chr19	1463178	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000498785.1:ENST00000478908.1:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	111	2	3.25434	3.310855	3.36737	4.06738e-4	4.62051e-5	0.00598202	9.60045e-4
chr19	10293697	10293779	17224727	0	+	0.634146	(0.59,1]	chr19	1418552	1	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.38614	3.31072	4.2353	0.0165254	0.0128707	0.0873033	0.0725185
chr2	218264208	218264289	3186555	0	-	0.481481	(0.455,0.49]	chr2	279860	2	UTR3	UTR3:EXON_MRNA	AAMP	ENSG00000127837.10	ENST00000444053.5:ENST00000248450.9:ENST00000475678.5:ENST00000420660.5:ENST00000494720.5:ENST00000489767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	2.80517	3.310705	3.81624	1.48205e-4	1.00884e-4	0.00269793	0.00181604
chr16	70258102	70258173	15996934	0	-	0.619718	(0.59,1]	chr16	1284615	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.91328	3.31067	3.70806	5.14321e-4	5.13816e-4	0.00719062	0.00665221
chrX	120254472	120254568	18844003	0	+	0.416667	(0.39,0.42]	chrX	1605766	11	CDS	CDS:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.88836	3.31065	3.73294	0.0190864	0.0102432	0.0958835	0.062872
chr10	73068845	73068914	11568857	0	-	0.42029	(0.42,0.455]	chr10	880499	1	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	201	2	2.0929	3.310625	4.52835	0.00170991	2.98828e-12	0.0176835	5.99859e-10
chr1	26255765	26255865	108663	0	+	0.52	(0.49,0.53]	chr1	12909	7	CDS	CDS:EXON_MRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.01617	3.3104649999999998	3.60476	8.62231e-4	4.52633e-4	0.0100487	0.00642319
chr6	75237769	75237865	7800165	0	-	0.354167	(0.33,0.36]	chr6	597617	2	UTR3	UTR3:EXON_MRNA	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	2.17058	3.31028	4.44998	0.01664	2.52033e-6	0.0878065	8.73705e-5
chr2	74214142	74214231	1891739	0	+	0.426966	(0.42,0.455]	chr2	179207	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	2.21768	3.31022	4.40276	0.00277726	0.0017618	0.0241009	0.0180053
chr1	173481325	173481403	548550	0	+	0.589744	(0.53,0.59]	chr1	58285	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000460950.1:ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	102	2	3.03277	3.310165	3.58756	5.76577e-5	1.12303e-6	0.00127765	4.41124e-5
chr7	30599991	30600049	8203540	0	+	0.37931	(0.36,0.39]	chr7	625777	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000454308.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000675025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.58765	3.309925	4.0322	0.00588589	8.39697e-4	0.0427941	0.00981548
chr1	193088850	193088949	631207	0	+	0.262626	[0,0.29]	chr1	64149	40	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.96533	3.30984	3.65435	0.0024246	2.35911e-5	0.0227938	5.58e-4
chr5	36168312	36168379	5933451	0	+	0.492537	(0.49,0.53]	chr5	465206	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000679258.1:ENST00000679015.1:ENST00000677911.1:ENST00000677984.1:ENST00000679283.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000508514.5:ENST00000509692.5:ENST00000678149.1:ENST00000678948.1:ENST00000513263.2:ENST00000677861.1:ENST00000504386.1:ENST00000677905.1:ENST00000677886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.72252	3.30961	3.8967	0.0161474	0.0128791	0.0860154	0.0725185
chr15	89151676	89151764	15092996	0	+	0.522727	(0.49,0.53]	chr15	1187051	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10:ENST00000562073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	107	2	3.18042	3.30951	3.4386	7.31454e-6	9.97799e-7	2.33147e-4	3.98163e-5
chr1	6264350	6264432	842846	0	-	0.47561	(0.455,0.49]	chr1	85002	2	UTR3	UTR3:EXON_MRNA	ACOT7	ENSG00000097021.20	ENST00000608083.5:ENST00000361521.9:ENST00000545482.5:ENST00000377860.8:ENST00000418124.5:ENST00000377855.6:ENST00000377845.7:ENST00000377842.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	3.12843	3.30938	3.49033	0.00392855	7.92678e-4	0.0322851	0.00933379
chrX	68070320	68070419	19098331	0	-	0.484848	(0.455,0.49]	chrX	1624706	58	INTRON	INTRON	OPHN1	ENSG00000079482.14	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	3.12843	3.30938	3.49033	0.00392855	7.92678e-4	0.0322851	0.00933379
chr16	20785045	20785107	15582890	0	+	0.451613	(0.42,0.455]	chr16	1234782	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1:ENST00000567387.5:ENST00000561499.1:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	54	2	2.91373	3.309375	3.70502	0.00892357	1.90816e-6	0.0567495	6.90654e-5
chr14	20457318	20457408	14171286	0	+	0.433333	(0.42,0.455]	chr14	1109116	3	CDS	CDS:UTR3:EXON_MRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.91373	3.3093000000000004	3.70487	0.00892357	1.55091e-5	0.0567495	3.95473e-4
chr1	150498896	150498965	468196	0	+	0.507246	(0.49,0.53]	chr1	47346	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TARS2	ENSG00000143374.17	ENST00000438568.6:ENST00000369054.6:ENST00000369064.8:ENST00000606933.5:ENST00000369051.7:ENST00000467982.6:ENST00000480070.5:ENST00000463555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.38097	3.3092800000000002	4.23759	0.0425419	0.00436474	0.167547	0.0335517
chr11	119029269	119029369	12626385	0	-	0.5	(0.49,0.53]	chr11	979732	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC37A4	ENSG00000137700.18	ENST00000525102.5:ENST00000330775.9:ENST00000357590.9:ENST00000538950.5:ENST00000545985.5:ENST00000532085.1:ENST00000650539.1:ENST00000527992.5:ENST00000638925.1:ENST00000638360.1:ENST00000638186.1:ENST00000530407.5:ENST00000525039.5:ENST00000524428.5:ENST00000525372.5:ENST00000529510.5:ENST00000532888.6:ENST00000526626.6:ENST00000525787.1:ENST00000534384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.38097	3.3092800000000002	4.23759	0.0425419	0.00436474	0.167547	0.0335517
chr17	50370523	50370586	16585009	0	-	0.507937	(0.49,0.53]	chr17	1363089	2	CDS	CDS:UTR5:EXON_MRNA	MRPL27	ENSG00000108826.16	ENST00000507088.5:ENST00000508200.5:ENST00000225969.9:ENST00000442592.3:ENST00000503633.5:ENST00000511860.1:ENST00000514928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.38097	3.3092800000000002	4.23759	0.0425419	0.00436474	0.167547	0.0335517
chr4	121686287	121686372	5626068	0	-	0.517647	(0.49,0.53]	chr4	448481	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000511552.5:ENST00000509016.5:ENST00000513428.5:ENST00000513523.1:ENST00000513728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.38097	3.3092800000000002	4.23759	0.0425419	0.00436474	0.167547	0.0335517
chr5	62512324	62512403	6611806	0	-	0.493671	(0.49,0.53]	chr5	511098	2	EXON_PSEUDO	EXON_PSEUDO	CKS1BP3	ENSG00000268942.2	ENST00000600888.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.38097	3.3092800000000002	4.23759	0.0425419	0.00436474	0.167547	0.0335517
chr7	135165382	135165482	9082235	0	-	0.5	(0.49,0.53]	chr7	693268	174	INTRON	INTRON	CYREN	ENSG00000122783.17	ENST00000459937.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	16	2	2.38097	3.3092800000000002	4.23759	0.0425419	0.00436474	0.167547	0.0335517
chr11	119049555	119049635	12626478	0	-	0.5125	(0.49,0.53]	chr11	979781	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6:ENST00000621959.4:ENST00000543287.5:ENST00000530473.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	158	2	1.65423	3.30923	4.96423	0.0288442	2.0064e-12	0.129096	4.20374e-10
chrX	154777415	154777506	18918819	0	+	0.43956	(0.42,0.455]	chrX	1612327	7	UTR3	UTR3:EXON_MRNA	DKC1	ENSG00000130826.18	ENST00000620277.4:ENST00000369550.10	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.91373	3.30912	3.70451	0.00892357	2.72131e-4	0.0567495	0.00404713
chr17	81890754	81890820	16709801	0	-	0.590909	(0.59,1]	chr17	1377785	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALYREF	ENSG00000183684.8	ENST00000505490.3:ENST00000512673.1:ENST00000511412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	3.0542	3.3090599999999997	3.56392	0.00663549	8.86707e-4	0.0456243	0.0101815
chr20	2658750	2658837	17879589	0	-	0.563218	(0.53,0.59]	chr20	1512914	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IDH3B	ENSG00000101365.21	ENST00000380851.9:ENST00000380843.9:ENST00000474315.5:ENST00000488299.5:ENST00000492240.5:ENST00000466494.6:ENST00000477689.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	3.00674	3.309035	3.61133	8.9408e-4	4.55298e-4	0.01086	0.00608573
chr3	31579808	31579904	3391919	0	+	0.375	(0.36,0.39]	chr3	295020	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	35	2	2.46176	3.30893	4.1561	0.00365867	2.14257e-5	0.0299719	5.67278e-4
chrX	141907005	141907104	18883536	0	+	0.555556	(0.53,0.59]	chrX	1608997	17	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.86162	3.308885	3.75615	2.16536e-4	7.12934e-5	0.00361336	0.00137329
chr11	62714704	62714803	12410557	0	-	0.393939	(0.39,0.42]	chr11	961490	22	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr15	42539807	42539906	15240741	0	-	0.393939	(0.39,0.42]	chr15	1200461	21	UTR3	UTR3:EXON_MRNA:INTRON	RP11-265N6.5:LRRC57	ENSG00000285942.1:ENSG00000180979.10	ENST00000650210.1:ENST00000323443.6:ENST00000397130.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr17	17264891	17264981	16464367	0	-	0.4	(0.39,0.42]	chr17	1344509	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000583160.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000495640.1:ENST00000462236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr2	73950584	73950658	1889906	0	+	0.405405	(0.39,0.42]	chr2	179026	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000489796.5:ENST00000462685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr2	196789203	196789286	3101593	0	-	0.409639	(0.39,0.42]	chr2	274046	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTF3C3	ENSG00000119041.11	ENST00000263956.8:ENST00000651042.1:ENST00000409364.3:ENST00000470386.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr21	37513525	37513625	18117413	0	+	0.41	(0.39,0.42]	chr21	1536308	11	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr9	127691055	127691154	10475562	0	+	0.393939	(0.39,0.42]	chr9	789241	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628638.1:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chrX	120163981	120164078	18843944	0	+	0.402062	(0.39,0.42]	chrX	1605751	3	UTR3	UTR3:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.49701	3.3088049999999996	4.1206	0.0339607	0.00597537	0.141431	0.0428562
chr14	39182153	39182250	14243331	0	+	0.257732	[0,0.29]	chr14	1114729	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.82443	3.30877	3.79311	0.0180803	1.75012e-4	0.0920398	0.00283967
chr2	61477970	61478065	2690336	0	-	0.294737	(0.29,0.33]	chr2	240316	4	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	70	2	2.70273	3.308645	3.91456	6.43415e-5	3.43266e-7	0.00137598	1.60752e-5
chr15	57243471	57243550	14949691	0	+	0.443038	(0.42,0.455]	chr15	1174890	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.70611	3.30854	3.91097	0.00397496	8.75299e-5	0.0322851	0.0016272
chr3	41236423	41236499	3432590	0	+	0.513158	(0.49,0.53]	chr3	298560	2	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000465552.2:ENST00000482042.1:ENST00000471014.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.38683	3.308345	4.22986	0.012654	1.25249e-5	0.0718207	3.30689e-4
chr5	240416	240476	5848079	0	+	0.433333	(0.42,0.455]	chr5	459576	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000511810.5:ENST00000515815.5:ENST00000509082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.91373	3.30823	3.70273	0.0215502	0.00892357	0.102904	0.0567495
chr6	30625501	30625599	7111730	0	+	0.591837	(0.59,1]	chr6	544930	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	160	2	2.0442	3.30817	4.57214	0.00492506	1.46654e-7	0.0378997	7.80073e-6
chr16	30655116	30655214	15630608	0	+	0.602041	(0.59,1]	chr16	1240318	6	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR14	ENSG00000156858.12	ENST00000564946.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2:ENST00000567322.1:ENST00000571654.1:ENST00000567989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.4994	3.3080600000000002	4.11672	0.0333573	0.0222273	0.137922	0.105595
chr19	17555813	17555893	17254542	0	+	0.75	(0.59,1]	chr19	1424417	1	CDS	CDS:EXON_MRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.4994	3.3080600000000002	4.11672	0.0333573	0.0222273	0.137922	0.105595
chr7	75987717	75987810	8862303	0	-	0.645161	(0.59,1]	chr7	677325	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM120A	ENSG00000189077.11	ENST00000493111.7:ENST00000417509.5:ENST00000439537.5:ENST00000490656.5:ENST00000493251.5:ENST00000440632.5:ENST00000480899.5:ENST00000465989.1:ENST00000431867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.4994	3.3080600000000002	4.11672	0.0333573	0.0222273	0.137922	0.105595
chrX	47228730	47228768	18687067	0	+	0.605263	(0.59,1]	chrX	1593351	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000462827.2:ENST00000520141.5:ENST00000462483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.4994	3.3080600000000002	4.11672	0.0333573	0.0222273	0.137922	0.105595
chr3	152462483	152462583	3818503	0	+	0.39	(0.36,0.39]	chr3	325707	2	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	101	2	2.84283	3.30796	3.77309	7.09942e-6	2.32805e-7	2.0881e-4	1.29879e-5
chr9	35698616	35698679	10639448	0	-	0.603175	(0.59,1]	chr9	804973	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000489255.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	47	2	1.82129	3.3078950000000003	4.7945	0.0227814	0.0031766	0.105293	0.0279054
chr15	57287654	57287754	14950151	0	+	0.37	(0.36,0.39]	chr15	1174949	16	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.18642	3.307665	3.42891	0.00359152	9.14064e-5	0.0302391	0.0016849
chr2	111240496	111240594	2840789	0	-	0.469388	(0.455,0.49]	chr2	253513	1	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.69053	3.3075799999999997	3.92463	0.0182983	0.0113417	0.0925808	0.0665375
chr6	36109243	36109343	7132623	0	+	0.46	(0.455,0.49]	chr6	549275	9	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.69053	3.3075799999999997	3.92463	0.0182983	0.0113417	0.0925808	0.0665375
chrX	65956742	65956832	19096414	0	-	0.477778	(0.455,0.49]	chrX	1624571	6	EXON_PSEUDO	EXON_PSEUDO	RBMXP5	ENSG00000217835.3	ENST00000456392.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.69053	3.3075799999999997	3.92463	0.0182983	0.0113417	0.0925808	0.0665375
chr19	49487629	49487644	17370711	0	+	0.666667	(0.59,1]	chr19	1443104	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CTD-3148I10.15:RPL13A	ENSG00000273189.1:ENSG00000142541.18	ENST00000595815.1:ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	7	149	2	3.24666	3.307545	3.36843	5.25099e-5	3.09674e-5	0.00117229	6.93274e-4
chr4	94289631	94289729	4982807	0	+	0.285714	[0,0.29]	chr4	407331	2	UTR3	UTR3:EXON_MRNA	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000394961.6:ENST00000509418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.16074	3.3074649999999997	4.45419	0.0222978	0.00133426	0.105845	0.0139317
chr5	43295751	43295834	6560222	0	-	0.409639	(0.39,0.42]	chr5	508359	1	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000514610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	62	2	2.91508	3.30742	3.69976	4.41174e-4	1.95428e-6	0.0062930699999999996	7.00948e-5
chr13	99543862	99543928	13865460	0	+	0.424242	(0.42,0.455]	chr13	1087195	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.36247	3.307245	4.25202	0.0462889	1.07036e-5	0.176878	2.92107e-4
chr1	148171459	148171558	457142	0	+	0.464646	(0.455,0.49]	chr1	45544	70	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr1	160030859	160030956	1327335	0	-	0.474227	(0.455,0.49]	chr1	135726	4	CDS	CDS:EXON_MRNA:INTRON	KCNJ10:PIGM	ENSG00000177807.10:ENSG00000143315.8	ENST00000639408.1:ENST00000637644.1:ENST00000640914.1:ENST00000509700.2:ENST00000368090.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr2	159762879	159762936	2163183	0	+	0.45614	(0.455,0.49]	chr2	199211	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr2	202884394	202884464	3128720	0	-	0.457143	(0.455,0.49]	chr2	276634	1	CDS	CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000463824.1:ENST00000477727.5:ENST00000475611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr4	78911271	78911365	4912696	0	+	0.489362	(0.455,0.49]	chr4	404412	8	CDS	CDS:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr5	55652625	55652723	6584222	0	-	0.489796	(0.455,0.49]	chr5	509685	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC38A9	ENSG00000177058.12	ENST00000505708.5:ENST00000515159.5:ENST00000416547.6:ENST00000318672.7:ENST00000396865.7:ENST00000508124.5:ENST00000515629.5:ENST00000512595.5:ENST00000511233.5:ENST00000524030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr5	60460045	60460144	6606161	0	-	0.484848	(0.455,0.49]	chr5	510609	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PDE4D:SETP21	ENSG00000113448.19:ENSG00000214244.4	ENST00000502484.6:ENST00000509355.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2:ENST00000514799.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr7	29651042	29651141	8747384	0	-	0.484848	(0.455,0.49]	chr7	667382	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1:ENST00000426767.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chrX	71120076	71120170	18729722	0	+	0.489362	(0.455,0.49]	chrX	1598112	1	CDS_START	CDS_START:CDS:EXON_MRNA	MED12	ENSG00000184634.16	ENST00000333646.10:ENST00000374080.8:ENST00000374102.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50904	3.307195	4.10535	0.0310515	0.0064531	0.131262	0.0450905
chr15	68183629	68183667	14994954	0	+	0.342105	(0.33,0.36]	chr15	1178728	1	CDS	CDS:EXON_MRNA:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	3.1452	3.30714	3.46908	0.00114872	9.8054e-5	0.0130528	0.00177549
chr11	108509047	108509145	12589094	0	-	0.377551	(0.36,0.39]	chr11	976307	38	UTR3	UTR3:EXON_MRNA	EXPH5	ENSG00000110723.12	ENST00000265843.9:ENST00000525344.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.84089	3.306955	3.77302	0.0162599	0.0128123	0.0866586	0.0719798
chr16	16124851	16124915	15568582	0	+	0.578125	(0.53,0.59]	chr16	1232830	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	28	2	2.99511	3.306835	3.61856	0.0303021	9.46531e-4	0.129773	0.010681
chr5	138182925	138182990	6243527	0	+	0.538462	(0.53,0.59]	chr5	486339	2	CDS	CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.99511	3.306835	3.61856	0.0303021	9.46531e-4	0.129773	0.010681
chr1	43360032	43360097	164208	0	+	0.507692	(0.49,0.53]	chr1	20849	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000478882.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	52	2	2.10817	3.3068150000000003	4.50546	0.00798134	1.89933e-6	0.0527008	6.87959e-5
chr1	32771948	32772046	130792	0	+	0.693878	(0.59,1]	chr1	16158	22	CDS	CDS:EXON_MRNA:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.76802	3.306795	3.84557	0.0410704	0.0158525	0.163285	0.0854671
chr11	2885159	2885257	12233196	0	-	0.744898	(0.59,1]	chr11	944797	6	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CDKN1C	ENSG00000129757.15	ENST00000414822.8:ENST00000440480.8:ENST00000430149.3:ENST00000380725.2:ENST00000681969.1:ENST00000647251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	26	2	2.76802	3.306795	3.84557	0.0410704	0.0158525	0.163285	0.0854671
chr11	62130230	62130320	11972307	0	+	0.666667	(0.59,1]	chr11	917550	6	CDS	CDS:EXON_MRNA	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8:ENST00000528037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	26	2	2.76802	3.306795	3.84557	0.0410704	0.0158525	0.163285	0.0854671
chr19	57527324	57527407	17407351	0	+	0.662651	(0.59,1]	chr19	1450346	1	UTR5	UTR5:EXON_MRNA	ZNF549	ENSG00000121406.9	ENST00000240719.7:ENST00000376233.8	protein_coding	protein_coding	protein_coding	protein_coding	1	26	2	2.76802	3.306795	3.84557	0.0410704	0.0158525	0.163285	0.0854671
chr12	10507909	10508009	12732063	0	+	0.36	(0.33,0.36]	chr12	989918	3	INTRON	INTRON	EIF2S3B	ENSG00000180574.3	ENST00000322446.3	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	3.08537	3.30673	3.52809	2.35626e-5	6.33975e-8	6.14739e-4	3.78178e-6
chr17	68044431	68044503	16333828	0	+	0.347222	(0.33,0.36]	chr17	1325133	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	2.44986	3.3066050000000002	4.16335	0.00563343	5.09889e-7	0.0422191	2.25036e-5
chr1	171796852	171796948	538211	0	+	0.416667	(0.39,0.42]	chr1	57845	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EEF1AKNMT	ENSG00000010165.20	ENST00000361735.4:ENST00000362019.7:ENST00000367737.9:ENST00000466643.1:ENST00000476386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	3.14527	3.3065949999999997	3.46792	5.33048e-4	7.10972e-5	0.00742114	0.00136974
chr16	48361197	48361292	15934922	0	-	0.410526	(0.39,0.42]	chr16	1278252	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000565620.5:ENST00000394725.3:ENST00000356721.3:ENST00000380006.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	42	2	3.14527	3.3065949999999997	3.46792	5.33048e-4	7.10972e-5	0.00742114	0.00136974
chr1	45003110	45003205	973523	0	-	0.494737	(0.49,0.53]	chr1	102742	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HECTD3	ENSG00000126107.15	ENST00000372168.7:ENST00000486132.5:ENST00000372172.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.60116	3.306435	4.01171	0.0056515	4.88513e-5	0.0422191	0.00100497
chr16	67198023	67198123	15708761	0	+	0.51	(0.49,0.53]	chr16	1249835	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	E2F4	ENSG00000205250.9	ENST00000379378.8:ENST00000567007.5:ENST00000565226.1:ENST00000567228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.60116	3.306435	4.01171	0.0056515	4.88513e-5	0.0422191	0.00100497
chrX	110176506	110176605	18820971	0	+	0.494949	(0.49,0.53]	chrX	1603939	32	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	2.60116	3.306435	4.01171	0.0056515	4.88513e-5	0.0422191	0.00100497
chr1	222621158	222621225	723874	0	+	0.432836	(0.42,0.455]	chr1	72950	1	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.36247	3.306375	4.25028	0.0462889	0.00406761	0.176878	0.032143
chr1	241879243	241879343	796589	0	+	0.45	(0.42,0.455]	chr1	79464	6	CDS	CDS:EXON_MRNA	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5:ENST00000521202.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.36247	3.306375	4.25028	0.0462889	0.00406761	0.176878	0.032143
chr13	31148025	31148092	13951405	0	-	0.432836	(0.42,0.455]	chr13	1095017	2	CDS	CDS:UTR3:EXON_MRNA	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.36247	3.306375	4.25028	0.0462889	0.00406761	0.176878	0.032143
chr6	36535393	36535492	7681723	0	-	0.444444	(0.42,0.455]	chr6	589008	94	INTRON	INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.36247	3.306375	4.25028	0.0462889	0.00406761	0.176878	0.032143
chr8	9781755	9781853	9192978	0	+	0.438776	(0.42,0.455]	chr8	702351	52	UTR3	UTR3:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.36247	3.306375	4.25028	0.0462889	0.00406761	0.176878	0.032143
chrX	54813487	54813550	18705047	0	+	0.428571	(0.42,0.455]	chrX	1596179	1	CDS	CDS:EXON_MRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.36247	3.306375	4.25028	0.0462889	0.00406761	0.176878	0.032143
chr22	21760752	21760851	18442358	0	-	0.454545	(0.42,0.455]	chr22	1572508	12	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	3.27	3.306265	3.34253	1.15661e-5	6.51228e-6	3.41751e-4	1.93775e-4
chr19	1435105	1435202	17193260	0	+	0.28866000000000003	[0,0.29]	chr19	1412186	3	UTR3	UTR3:EXON_MRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000587079.5:ENST00000589484.5:ENST00000585485.2:ENST00000589874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.8304	3.30626	3.78212	0.0121878	3.32518e-4	0.0701019	0.00506816
chr16	85672836	85672935	15798081	0	+	0.424242	(0.42,0.455]	chr16	1257094	4	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	103	2	2.61712	3.305865	3.99461	1.85391e-4	3.0747e-8	0.00322183	2.04326e-6
chr1	182879329	182879410	595101	0	+	0.469136	(0.455,0.49]	chr1	61643	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000474446.5:ENST00000485081.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.10347	3.3057600000000003	4.50805	0.0313707	0.00122223	0.13127	0.0135383
chr1	28500168	28500266	117073	0	+	0.377551	(0.36,0.39]	chr1	14288	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHACTR4	ENSG00000204138.13	ENST00000373839.8:ENST00000632964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr1	40240347	40240447	152795	0	+	0.37	(0.36,0.39]	chr1	19092	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr1	51773903	51774000	191543	0	+	0.381443	(0.36,0.39]	chr1	24535	8	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr1	77161349	77161405	1109908	0	-	0.375	(0.36,0.39]	chr1	111544	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5:ENST00000359130.1:ENST00000478391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr14	51255793	51255891	14278867	0	+	0.367347	(0.36,0.39]	chr14	1116425	14	UTR3	UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr15	34915108	34915179	15207237	0	-	0.380282	(0.36,0.39]	chr15	1197365	2	CDS	CDS:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr17	76311049	76311147	16689000	0	-	0.387755	(0.36,0.39]	chr17	1374565	17	UTR3	UTR3:EXON_MRNA	PRPSAP1	ENSG00000161542.17	ENST00000446526.8:ENST00000324684.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr2	111834692	111834782	2846811	0	-	0.366667	(0.36,0.39]	chr2	253875	2	CDS	CDS:EXON_MRNA	ANAPC1	ENSG00000153107.13	ENST00000427997.5:ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr2	208355305	208355403	2345775	0	+	0.367347	(0.36,0.39]	chr2	212037	1	UTR3	UTR3:EXON_MRNA	PIKFYVE	ENSG00000115020.17	ENST00000264380.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr21	25749035	25749120	18081315	0	+	0.388235	(0.36,0.39]	chr21	1533089	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GABPA	ENSG00000154727.11	ENST00000354828.7:ENST00000400075.4:ENST00000487266.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr3	43366327	43366424	4143541	0	-	0.381443	(0.36,0.39]	chr3	346401	6	UTR3	UTR3:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr3	87051191	87051287	4309927	0	-	0.364583	(0.36,0.39]	chr3	359579	1	EXON_PSEUDO	EXON_PSEUDO	PPATP1	ENSG00000241293.1	ENST00000496669.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.63115	3.3057	3.98025	0.0245975	0.00881716	0.114841	0.0562439
chr11	17086768	17086867	12295152	0	-	0.313131	(0.29,0.33]	chr11	950318	3	UTR3	UTR3:EXON_MRNA:INTRON	PIK3C2A	ENSG00000011405.13	ENST00000531428.1:ENST00000265970.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.36742	3.305645	4.24387	0.0147368	0.00263476	0.0801529	0.0239118
chr6	44234054	44234142	7161531	0	+	0.329545	(0.29,0.33]	chr6	553816	7	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000371713.6:ENST00000371755.9:ENST00000371724.6:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.36742	3.305645	4.24387	0.0147368	0.00263476	0.0801529	0.0239118
chr7	100633284	100633340	8952304	0	-	0.678571	(0.59,1]	chr7	684207	2	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000476304.5:ENST00000473374.5:ENST00000473571.1:ENST00000475011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	124	2	2.25537	3.3055250000000003	4.35568	0.00890868	6.38708e-7	0.0567495	2.73248e-5
chr21	25729694	25729794	18190607	0	-	0.47	(0.455,0.49]	chr21	1544008	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP5PF	ENSG00000154723.13	ENST00000400099.5:ENST00000400093.3:ENST00000400087.7:ENST00000400090.7:ENST00000457143.6:ENST00000400094.5:ENST00000284971.8:ENST00000486002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	2.73862	3.305475	3.87233	1.62714e-4	1.08465e-4	0.00290162	0.00193256
chr1	209268137	209268223	1470951	0	-	0.523256	(0.49,0.53]	chr1	148733	5	EXON_PSEUDO	EXON_PSEUDO	ATP5MC2P1	ENSG00000225712.1	ENST00000433580.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	35	2	2.38097	3.305415	4.22986	0.0425419	1.25249e-5	0.167547	3.30689e-4
chr3	155925303	155925366	3824532	0	+	0.428571	(0.42,0.455]	chr3	326213	2	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	2.812	3.305405	3.79881	2.25472e-4	1.65328e-4	0.00346549	0.0029267300000000002
chr11	27890533	27890633	12317024	0	-	0.43	(0.42,0.455]	chr11	952778	18	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	41	2	2.81191	3.3053600000000003	3.79881	6.31824e-4	1.65328e-4	0.0078507	0.0029267300000000002
chr1	156525404	156525502	1315571	0	-	0.489796	(0.455,0.49]	chr1	133633	1	UTR3	UTR3:EXON_MRNA	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	2.83283	3.30534	3.77785	6.06795e-4	9.38535e-6	0.00817698	2.61344e-4
chr18	35991486	35991584	17077746	0	-	0.459184	(0.455,0.49]	chr18	1403036	18	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1A	ENSG00000141425.18	ENST00000587563.5:ENST00000585879.1:ENST00000399022.9:ENST00000590898.5:ENST00000357384.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	54	2	2.83283	3.30534	3.77785	6.06795e-4	9.38535e-6	0.00817698	2.61344e-4
chr9	128979261	128979327	10482541	0	+	0.454545	(0.42,0.455]	chr9	791046	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.90616	3.305335	3.70451	0.00162359	2.72131e-4	0.0169915	0.00404713
chr15	78542508	78542608	15040519	0	+	0.45	(0.42,0.455]	chr15	1183201	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000560033.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000558635.1:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	92	2	2.619	3.305325	3.99165	1.03634e-4	1.91751e-7	0.00201586	9.81202e-6
chr11	74841814	74841914	12020763	0	+	0.5	(0.49,0.53]	chr11	926732	52	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5:ENST00000527301.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.05119	3.30524	4.55929	0.0360743	0.00116196	0.145024	0.0130851
chr1	29148409	29148509	914075	0	-	0.51	(0.49,0.53]	chr1	95608	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SRSF4	ENSG00000116350.17	ENST00000373795.7:ENST00000634348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	76	2	2.61777	3.3051700000000004	3.99257	0.00172617	1.93793e-7	0.0178146	9.9078e-6
chr1	46361569	46361657	178897	0	+	0.511364	(0.49,0.53]	chr1	23221	1	CDS	CDS:UTR3:EXON_MRNA	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000474844.6:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.18239	3.305145	4.4279	0.024394	0.00196987	0.111797	0.0193972
chr1	109309964	109310064	1219429	0	-	0.51	(0.49,0.53]	chr1	118935	5	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.18239	3.305145	4.4279	0.024394	0.00196987	0.111797	0.0193972
chr11	8717540	8717640	12260012	0	-	0.51	(0.49,0.53]	chr11	947843	4	SS5_PROX	SS5_PROX:INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530991.5:ENST00000526099.5:ENST00000530438.5:ENST00000533020.5:ENST00000532734.5:ENST00000530593.5:ENST00000626808.2:ENST00000528527.5:ENST00000531060.1:ENST00000533425.5:ENST00000526057.5:ENST00000528196.5:ENST00000527510.5:ENST00000530580.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.18239	3.305145	4.4279	0.024394	0.00196987	0.111797	0.0193972
chr18	49489454	49489550	17119600	0	-	0.479167	(0.455,0.49]	chr18	1405581	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000584364.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000582588.1:ENST00000617346.4:ENST00000581091.1:ENST00000581741.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	2.48891	3.305065	4.12122	7.24922e-4	7.48316e-7	0.00911324	3.12066e-5
chr11	61965078	61965105	12406731	0	-	0.592593	(0.59,1]	chr11	960794	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	199	2	2.92672	3.30505	3.68338	2.10249e-4	7.59676e-7	0.00355792	3.165e-5
chr1	167541506	167541605	1347831	0	-	0.353535	(0.33,0.36]	chr1	137992	6	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	3.15976	3.30495	3.45014	0.00437542	8.23333e-5	0.0340502	0.00155613
chr1	120157037	120157137	1255390	0	-	0.42	(0.39,0.42]	chr1	123029	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEC22B	ENSG00000265808.4	ENST00000578049.4	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.48908	3.3048399999999996	4.1206	0.0101318	0.00597537	0.0626311	0.0428562
chr14	21352572	21352672	14521134	0	-	0.4	(0.39,0.42]	chr14	1137303	12	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.48908	3.3048399999999996	4.1206	0.0101318	0.00597537	0.0626311	0.0428562
chr6	33305287	33305387	7669262	0	-	0.6	(0.59,1]	chr6	587575	4	CDS	CDS:EXON_MRNA:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	165	2	2.88028	3.30473	3.72918	1.33545e-4	5.26949e-6	0.00248469	1.61486e-4
chr17	75168141	75168239	16682496	0	-	0.346939	(0.33,0.36]	chr17	1372978	27	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7:ENST00000314523.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	219	2	2.85943	3.304665	3.7499	4.34794e-7	2.91561e-10	2.19047e-5	3.51974e-8
chr1	241508760	241508785	1577485	0	-	0.4	(0.39,0.42]	chr1	157533	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	2.5823	3.304585	4.02687	0.00246531	4.35816e-5	0.0230262	0.00091744700000000005
chr17	47673017	47673091	16251878	0	+	0.432432	(0.42,0.455]	chr17	1316720	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1:ENST00000580019.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	3.2972	3.304405	3.31161	0.00186138	1.93851e-4	0.018635	0.00307904
chr4	1812557	1812656	5280228	0	-	0.434343	(0.42,0.455]	chr4	425052	12	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.20599	3.304375	4.40276	0.0227797	0.0017618	0.105293	0.0180053
chr4	139388584	139388684	5128462	0	+	0.34	(0.33,0.36]	chr4	415252	6	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	3.01006	3.30437	3.59868	1.07969e-4	8.657e-7	0.00207831	3.53908e-5
chrX	136667829	136667928	19249216	0	-	0.535354	(0.53,0.59]	chrX	1635284	24	UTR3	UTR3:EXON_MRNA	ARHGEF6	ENSG00000129675.16	ENST00000370622.5:ENST00000370620.5:ENST00000250617.7	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.45052	3.304285	4.15805	0.00680952	0.00355092	0.0468196	0.0300049
chr7	116507052	116507151	8475399	0	+	0.282828	[0,0.29]	chr7	647296	10	UTR3	UTR3:EXON_MRNA	CAV2	ENSG00000105971.15	ENST00000222693.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.13753	3.304205	3.47088	0.00396668	0.0015572	0.0317467	0.0165415
chr1	184073248	184073344	601720	0	+	0.385417	(0.36,0.39]	chr1	62323	5	UTR3	UTR3:EXON_MRNA:INTRON	TSEN15	ENSG00000198860.14	ENST00000423085.7:ENST00000361641.6:ENST00000643231.1:ENST00000533373.6:ENST00000647437.1:ENST00000647465.1:ENST00000643916.1:ENST00000645668.2:ENST00000644145.1:ENST00000644592.1:ENST00000646297.2:ENST00000645963.2:ENST00000644479.1:ENST00000462677.3:ENST00000643702.1:ENST00000644815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	2.80604	3.304145	3.80225	2.42014e-4	1.85308e-4	0.00366309	0.00322093
chr19	9142286	9142385	17221739	0	+	0.40404	(0.39,0.42]	chr19	1417827	13	INTRON	INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000419608.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	3.19588	3.30414	3.4124	0.00321212	9.95835e-5	0.0280721	0.00180006
chr1	11791266	11791326	861716	0	-	0.533333	(0.53,0.59]	chr1	87363	2	CDS	CDS:UTR3:EXON_MRNA	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6:ENST00000641747.1:ENST00000641805.1:ENST00000641446.1:ENST00000423400.7:ENST00000641407.1:ENST00000641759.1:ENST00000641820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.7898	3.3040950000000002	3.81839	0.0184435	0.0128364	0.0945306	0.0719798
chr11	1950898	1950959	11764095	0	+	0.57377	(0.53,0.59]	chr11	899979	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL23	ENSG00000214026.11	ENST00000381519.5:ENST00000397297.7:ENST00000397298.8:ENST00000381514.7:ENST00000397294.7:ENST00000462288.5:ENST00000486931.1:ENST00000429295.1:ENST00000466346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.7898	3.3040950000000002	3.81839	0.0184435	0.0128364	0.0945306	0.0719798
chr13	51944199	51944291	14031054	0	-	0.565217	(0.53,0.59]	chr13	1100398	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000673867.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000674126.1:ENST00000466629.1:ENST00000635406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	18	2	2.7898	3.3040950000000002	3.81839	0.0184435	0.0128364	0.0945306	0.0719798
chr19	49430331	49430424	17606396	0	-	0.537634	(0.53,0.59]	chr19	1483928	11	UTR3	UTR3:EXON_MRNA	SLC17A7	ENSG00000104888.10	ENST00000221485.8:ENST00000600601.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.7898	3.3040950000000002	3.81839	0.0184435	0.0128364	0.0945306	0.0719798
chr17	82849920	82850020	16386361	0	+	0.58	(0.53,0.59]	chr17	1332978	34	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	3.29875	3.30409	3.30943	0.00191422	0.0018255	0.0183913	0.018324
chr17	81843821	81843916	16709492	0	-	0.6	(0.59,1]	chr17	1377674	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	360	2	3.03677	3.304055	3.57134	1.86333e-5	1.1418e-7	5.05979e-4	6.27229e-6
chr6	149731673	149731735	8018932	0	-	0.451613	(0.42,0.455]	chr6	612724	2	CDS	CDS:UTR3:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	66	2	2.90284	3.3039300000000003	3.70502	4.27478e-4	1.90816e-6	0.00618684	6.90654e-5
chr2	52134696	52134796	1810144	0	+	0.39	(0.36,0.39]	chr2	173157	576	INTRON	INTRON	AC007682.1	ENSG00000231918.1	ENST00000440698.1	lncRNA	lncRNA	lncRNA	lncRNA	4	48	2	2.48922	3.303895	4.11857	0.0110399	7.37081e-7	0.0652374	3.07785e-5
chr5	54056886	54056985	6577631	0	-	0.353535	(0.33,0.36]	chr5	509097	87	INTRON	INTRON	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	3.00573	3.303855	3.60198	0.00630535	6.01238e-4	0.044701	0.00811676
chr17	49618980	49619044	16582287	0	-	0.5	(0.49,0.53]	chr17	1362478	1	CDS	CDS:UTR3:EXON_MRNA	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000503676.5:ENST00000509869.5:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.48488	3.3037549999999998	4.12263	0.032052	0.00591451	0.133433	0.0427941
chr18	26832158	26832249	17048558	0	-	0.527473	(0.49,0.53]	chr18	1401374	8	EXON_PSEUDO	EXON_PSEUDO	RP11-552O4.2	ENSG00000266184.1	ENST00000583051.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.48488	3.3037549999999998	4.12263	0.032052	0.00591451	0.133433	0.0427941
chr19	9162863	9162958	17221956	0	+	0.505263	(0.49,0.53]	chr19	1417857	16	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF317	ENSG00000130803.15	ENST00000247956.11:ENST00000360385.7:ENST00000591278.5:ENST00000591508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.48488	3.3037549999999998	4.12263	0.032052	0.00591451	0.133433	0.0427941
chr3	37006990	37007063	3410675	0	+	0.493151	(0.49,0.53]	chr3	296271	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000457004.5:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000454028.5:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000492474.5:ENST00000429117.5:ENST00000674107.1:ENST00000466900.5:ENST00000485889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.48488	3.3037549999999998	4.12263	0.032052	0.00591451	0.133433	0.0427941
chr5	138192580	138192657	6860900	0	-	0.402597	(0.39,0.42]	chr5	524927	2	CDS	CDS:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000471692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.18155	3.3036950000000003	4.42584	0.0283931	0.00199429	0.127654	0.0189001
chr12	7936110	7936187	13193343	0	-	0.441558	(0.42,0.455]	chr12	1033534	2	UTR5	UTR5:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000495813.5:ENST00000544291.1:ENST00000544936.1:ENST00000476634.1:ENST00000541671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	3.05889	3.303635	3.54838	0.00524205	5.9986e-4	0.0399155	0.0075062
chr2	70280985	70281085	1878812	0	+	0.43	(0.42,0.455]	chr2	177457	37	UTR3	UTR3:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000433351.7	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.05889	3.303635	3.54838	0.00524205	5.9986e-4	0.0399155	0.0075062
chr16	28836974	28837062	15620408	0	+	0.579545	(0.53,0.59]	chr16	1238485	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000564162.1:ENST00000567024.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	6	69	2	1.72504	3.303385	4.88173	0.0213174	1.36047e-7	0.102501	7.30332e-6
chr17	50381431	50381528	16585107	0	-	0.42268	(0.42,0.455]	chr17	1363112	3	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	16	155	2	2.87217	3.303345	3.73452	5.67666e-6	1.08942e-8	1.88506e-4	8.34724e-7
chr14	35308913	35308963	14225544	0	+	0.36	(0.33,0.36]	chr14	1113829	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000627895.2:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1:ENST00000555050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.26699	3.302975	4.33896	0.00427416	0.00182033	0.0332637	0.0183913
chr11	65021755	65021855	11981864	0	+	0.62	(0.59,1]	chr11	919690	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ARL2:ARL2-SNX15	ENSG00000213465.8:ENSG00000273003.1	ENST00000246747.9:ENST00000529384.5:ENST00000301886.3:ENST00000533729.1:ENST00000529254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	49	2	2.61822	3.3028649999999997	3.98751	0.0301044	0.00201173	0.129773	0.019022
chr1	171683782	171683876	1368503	0	-	0.457447	(0.455,0.49]	chr1	139450	8	EXON_PSEUDO	EXON_PSEUDO	RPL4P3	ENSG00000230364.1	ENST00000428881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	27	2	2.58479	3.302595	4.0204	0.00736097	0.00200187	0.0490627	0.0189555
chr1	149833478	149833574	464754	0	+	0.46875	(0.455,0.49]	chr1	46792	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	H4C14	ENSG00000270882.2	ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	16	2	3.12843	3.3025700000000002	3.47671	0.0368644	0.00392855	0.145024	0.0322851
chrX	81202200	81202245	18749187	0	+	0.466667	(0.455,0.49]	chrX	1600031	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	3.12843	3.3025700000000002	3.47671	0.0368644	0.00392855	0.145024	0.0322851
chr16	75634232	75634292	16039142	0	-	0.516667	(0.49,0.53]	chr16	1288316	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.99849	3.30251	3.60653	0.00630123	4.50981e-4	0.0445415	0.00605268
chr2	15630806	15630906	1651010	0	+	0.51	(0.49,0.53]	chr2	162988	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.99849	3.30251	3.60653	0.00630123	4.50981e-4	0.0445415	0.00605268
chr6	35574562	35574660	7676287	0	-	0.510204	(0.49,0.53]	chr6	588423	11	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.70307	3.302505	3.90194	0.00363585	9.11374e-5	0.0298137	0.00182992
chr20	34089729	34089829	17945937	0	-	0.51	(0.49,0.53]	chr20	1519883	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	2.67649	3.3024449999999996	3.9284	2.28191e-4	5.69067e-8	0.00379211	3.43312e-6
chr12	56161501	56161587	12898557	0	+	0.488372	(0.455,0.49]	chr12	1004368	2	UTR3	UTR3:EXON_MRNA:INTRON	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000549017.5:ENST00000550697.6:ENST00000547649.5:ENST00000547408.5:ENST00000548400.5:ENST00000546845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	65	2	2.21571	3.30244	4.38917	7.84313e-4	3.90809e-6	0.00927662	1.38004e-4
chr6	44233703	44233791	7161527	0	+	0.568182	(0.53,0.59]	chr6	553816	3	UTR3	UTR3:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000371713.6:ENST00000371755.9:ENST00000652453.1:ENST00000371724.6:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	3.21941	3.3023949999999997	3.38538	0.00266171	1.18366e-4	0.0240332	0.00207204
chr19	38836369	38836457	17561059	0	-	0.386364	(0.36,0.39]	chr19	1475059	1	UTR3	UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000595804.5:ENST00000597731.1:ENST00000595164.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	2.18029	3.3021599999999998	4.42403	0.0077769	3.10878e-6	0.0517139	1.04078e-4
chr15	78935679	78935750	15398734	0	-	0.422535	(0.42,0.455]	chr15	1217595	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000528191.6:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000679047.1:ENST00000676865.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000677320.1:ENST00000529612.6:ENST00000529263.7:ENST00000534038.6:ENST00000530929.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	43	2	2.03532	3.3021000000000003	4.56888	0.040947	1.1745e-6	0.163285	4.57782e-5
chr1	65619927	65620023	253511	0	+	0.34375	(0.33,0.36]	chr1	28877	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1:ENST00000471762.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	108	2	2.58647	3.3020300000000002	4.01759	6.31966e-4	1.34609e-9	0.00837621	1.36639e-7
chr3	10126394	10126493	3302350	0	+	0.464646	(0.455,0.49]	chr3	290648	2	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	3.1572	3.302	3.4468	2.53088e-5	9.07948e-7	6.51851e-4	3.68762e-5
chr6	132817379	132817479	7406842	0	+	0.29	[0,0.29]	chr6	567806	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	2.31133	3.301895	4.29246	0.00696038	0.00254021	0.0474632	0.0227257
chr17	5433114	5433164	16421507	0	-	0.52	(0.49,0.53]	chr17	1338173	1	CDS	CDS:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573204.1:ENST00000573421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	2.46958	3.30189	4.1342	0.00344146	6.96953e-7	0.0292838	2.93629e-5
chr4	99076291	99076378	5548266	0	-	0.436782	(0.42,0.455]	chr4	443159	1	CDS	CDS:UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	2.50714	3.301875	4.09661	0.00122903	2.79795e-5	0.0130835	7.07527e-4
chr1	52385851	52385949	1018824	0	-	0.632653	(0.59,1]	chr1	105604	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.25872	3.3017950000000003	4.34487	0.0193473	0.0123678	0.0969537	0.0705839
chr22	38738670	38738754	18511587	0	-	0.702381	(0.59,1]	chr22	1580309	2	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000455125.1:ENST00000470642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.25872	3.3017950000000003	4.34487	0.0193473	0.0123678	0.0969537	0.0705839
chr9	123125496	123125596	10842435	0	-	0.33	(0.29,0.33]	chr9	821534	33	UTR3	UTR3:EXON_MRNA:INTRON	STRBP	ENSG00000165209.19	ENST00000478973.6:ENST00000471564.6:ENST00000496533.5:ENST00000348403.10:ENST00000447404.6:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	3.13212	3.301685	3.47125	0.00551048	7.49757e-5	0.0414592	0.00142868
chr1	19307001	19307089	877710	0	-	0.545455	(0.53,0.59]	chr1	90643	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AKR7A2	ENSG00000053371.13	ENST00000235835.8:ENST00000330072.9:ENST00000489286.5:ENST00000481966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr1	37809073	37809168	142893	0	+	0.589474	(0.53,0.59]	chr1	17889	1	UTR3	UTR3:EXON_MRNA	C1orf122	ENSG00000197982.14	ENST00000373043.1:ENST00000468084.1:ENST00000373042.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr1	160279550	160279634	1328566	0	-	0.559524	(0.53,0.59]	chr1	135913	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-574F21.3:PEX19	ENSG00000258465.8:ENSG00000162735.19	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000368072.10:ENST00000472750.5:ENST00000467711.5:ENST00000532508.5:ENST00000495624.1:ENST00000462644.5:ENST00000532643.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr1	183940649	183940718	1405223	0	-	0.565217	(0.53,0.59]	chr1	142166	2	CDS	CDS:EXON_MRNA	COLGALT2	ENSG00000198756.12	ENST00000649786.1:ENST00000361927.9:ENST00000367521.5:ENST00000367520.3	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr16	85678211	85678311	16063983	0	-	0.54	(0.53,0.59]	chr16	1290450	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GINS2	ENSG00000131153.9	ENST00000253462.8	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr17	63834166	63834247	16635147	0	-	0.555556	(0.53,0.59]	chr17	1367736	1	CDS	CDS:UTR3:EXON_MRNA	SMARCD2	ENSG00000108604.16	ENST00000448276.7:ENST00000613943.4:ENST00000323347.14:ENST00000225742.13:ENST00000450364.3:ENST00000584483.5:ENST00000584400.5:ENST00000578234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr18	35344013	35344095	17076764	0	-	0.585366	(0.53,0.59]	chr18	1402869	2	SS5_PROX	SS5_PROX:INTRON	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000590140.1	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr19	6416460	6416511	17442214	0	-	0.588235	(0.53,0.59]	chr19	1456786	2	EXON_SMALL	EXON_SMALL:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	KHSRP:MIR3940	ENSG00000088247.18:ENSG00000284159.1	ENST00000600480.2:ENST00000398148.7:ENST00000619396.4:ENST00000595223.5:ENST00000579148.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:primary_miRNA	1	18	2	2.77921	3.30164	3.82407	0.0179666	0.0132865	0.0918323	0.0740932
chr2	86147701	86147767	2772816	0	-	0.439394	(0.42,0.455]	chr2	246321	1	CDS	CDS:EXON_MRNA:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.05515	3.3015350000000003	4.54792	0.017518	9.66045e-4	0.0924156	0.0115185
chr1	42746796	42746832	966419	0	-	0.527778	(0.49,0.53]	chr1	101704	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000462474.5:ENST00000472802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.8681	3.30152	3.73494	0.0189345	0.00175299	0.0934721	0.0171299
chr17	39995175	39995235	16222559	0	+	0.516667	(0.49,0.53]	chr17	1311747	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000485835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.8681	3.30152	3.73494	0.0189345	0.00175299	0.0934721	0.0171299
chr11	87322132	87322231	12054881	0	+	0.292929	(0.29,0.33]	chr11	929334	9	UTR3	UTR3:EXON_MRNA	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000531643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	2.94844	3.301485	3.65453	0.00217122	2.84967e-6	0.0208941	9.64791e-5
chr1	21875862	21875952	891225	0	-	0.611111	(0.59,1]	chr1	92519	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	5	120	2	2.85681	3.3013649999999997	3.74592	0.00235278	4.7416e-6	0.0222204	1.48657e-4
chr1	32334122	32334217	922171	0	-	0.547368	(0.53,0.59]	chr1	97099	4	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	15	177	2	3.24043	3.301195	3.36196	8.26241e-7	3.37051e-7	3.77388e-5	1.5835e-5
chr12	56713125	56713190	13352478	0	-	0.430769	(0.42,0.455]	chr12	1051836	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NACA	ENSG00000196531.14	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000546410.1:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	56	575	2	2.82816	3.301155	3.77415	1.59867e-7	5.78837e-12	9.45412e-6	1.07304e-9
chr1	52087945	52088044	192290	0	+	0.373737	(0.36,0.39]	chr1	24661	13	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.66836	3.301085	4.93381	0.0474647	1.90009e-4	0.17993	0.00302753
chr8	6708836	6708904	9180274	0	+	0.588235	(0.53,0.59]	chr8	701006	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5:ENST00000518327.1:ENST00000523586.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.90978	3.3010099999999998	3.69224	0.00857883	1.78865e-5	0.0552386	4.45448e-4
chr2	157296453	157296513	2152492	0	+	0.316667	(0.29,0.33]	chr2	198595	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.62211	3.3007600000000004	3.97941	0.00310562	5.81801e-5	0.0274272	0.00116944
chr1	36289147	36289235	141565	0	+	0.443182	(0.42,0.455]	chr1	17562	2	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	3.19078	3.3005950000000004	3.41041	0.00310864	1.00299e-4	0.0274272	0.00180803
chr17	41764994	41765067	16543086	0	-	0.547945	(0.53,0.59]	chr17	1356295	2	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.515	3.3004949999999997	4.08599	0.0292633	3.38473e-5	0.129773	7.45971e-4
chr17	78160954	78161054	16367623	0	+	0.57	(0.53,0.59]	chr17	1329535	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C17orf99	ENSG00000187997.11	ENST00000340363.9:ENST00000586999.2:ENST00000591995.1:ENST00000451352.3:ENST00000586029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.515	3.3004949999999997	4.08599	0.0292633	3.38473e-5	0.129773	7.45971e-4
chr20	59006392	59006464	18026199	0	-	0.583333	(0.53,0.59]	chr20	1527960	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CTSZ	ENSG00000101160.15	ENST00000681011.1:ENST00000680879.1:ENST00000680753.1:ENST00000681877.1:ENST00000681175.1:ENST00000680263.1:ENST00000681416.1:ENST00000488395.2:ENST00000217131.6:ENST00000680283.1:ENST00000681664.1:ENST00000680738.1:ENST00000680206.1:ENST00000680456.1:ENST00000681427.1:ENST00000680628.1:ENST00000680300.1:ENST00000680565.1:ENST00000681360.1:ENST00000680995.1:ENST00000679948.1:ENST00000679991.1:ENST00000679391.1:ENST00000503833.7:ENST00000681797.1:ENST00000680880.1:ENST00000680386.1:ENST00000472025.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	2	37	2	2.515	3.3004949999999997	4.08599	0.0292633	3.38473e-5	0.129773	7.45971e-4
chr10	119059659	119059718	11717443	0	-	0.372881	(0.36,0.39]	chr10	893818	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2:ENST00000462527.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.56782	3.30001	4.0322	0.00659672	0.00588589	0.0460001	0.0427941
chr5	34831251	34831348	5929875	0	+	0.360825	(0.36,0.39]	chr5	464654	6	UTR3	UTR3:EXON_MRNA	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000428746.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.56782	3.30001	4.0322	0.00659672	0.00588589	0.0460001	0.0427941
chr10	73444143	73444234	11572001	0	-	0.373626	(0.36,0.39]	chr10	880980	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP3CB	ENSG00000107758.16	ENST00000360663.10:ENST00000394828.6:ENST00000394829.6:ENST00000430762.6:ENST00000342558.3	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	3.20198	3.3000049999999996	3.39803	0.00122711	4.4092e-4	0.0130695	0.0062930699999999996
chr12	116576042	116576131	13105243	0	+	0.426966	(0.42,0.455]	chr12	1022795	1	CDS	CDS:EXON_MRNA	MAP1LC3B2	ENSG00000258102.5	ENST00000556529.4	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.54043	3.2999850000000004	4.05954	0.00705852	0.00617886	0.047732	0.0439741
chr21	33517440	33517524	18220468	0	-	0.428571	(0.42,0.455]	chr21	1546353	2	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.54043	3.2999850000000004	4.05954	0.00705852	0.00617886	0.047732	0.0439741
chr4	10077375	10077448	5311616	0	-	0.452055	(0.42,0.455]	chr4	427633	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000515743.5:ENST00000502962.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.54043	3.2999850000000004	4.05954	0.00705852	0.00617886	0.047732	0.0439741
chr7	139079578	139079673	9102389	0	-	0.421053	(0.42,0.455]	chr7	694570	6	CDS	CDS:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.54043	3.2999850000000004	4.05954	0.00705852	0.00617886	0.047732	0.0439741
chr6	75258779	75258848	7800357	0	-	0.362319	(0.36,0.39]	chr6	597654	1	CDS	CDS:UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.63521	3.29982	3.96443	0.00633242	2.41623e-6	0.0446708	8.42558e-5
chr1	160310191	160310258	1328898	0	-	0.38806	(0.36,0.39]	chr1	136063	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000481040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	2.35745	3.299695	4.24194	0.00276729	0.00143393	0.0247437	0.0147046
chr2	189560688	189560787	3082389	0	-	0.393939	(0.39,0.42]	chr2	272309	2	UTR3	UTR3:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.31773	3.299505	4.28128	0.00382583	0.00342611	0.0319415	0.0283456
chr15	64155927	64156022	15339271	0	-	0.631579	(0.59,1]	chr15	1210863	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680343.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	220	2	2.93659	3.2994	3.66221	2.89131e-5	2.85172e-6	6.58352e-4	1.06958e-4
chrX	52633652	52633751	18701816	0	+	0.434343	(0.42,0.455]	chrX	1595738	4	EXON_LNCRNA	EXON_LNCRNA	SSX8P	ENSG00000157965.12	ENST00000675258.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	35	2	1.91899	3.2994	4.67981	0.00718351	5.38444e-4	0.0482184	0.00744072
chr18	669122	669173	16717006	0	+	0.470588	(0.455,0.49]	chr18	1379291	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	1.95898	3.29938	4.63978	0.047107	6.94032e-4	0.172269	0.00876781
chr1	230280050	230280148	749807	0	+	0.387755	(0.36,0.39]	chr1	76088	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	3.2928	3.2993550000000003	3.30591	2.65442e-4	1.89047e-4	0.004287	0.003022
chr14	21212959	21213038	14520541	0	-	0.481013	(0.455,0.49]	chr14	1137245	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000555585.5:ENST00000554417.1:ENST00000555215.5:ENST00000555137.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	89	2	2.3153	3.2990700000000004	4.28284	0.00184266	1.4648e-8	0.0185307	1.07724e-6
chr1	11056603	11056680	859099	0	-	0.506494	(0.49,0.53]	chr1	86772	1	CDS	CDS:UTR3:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000376957.7:ENST00000459997.1:ENST00000465788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.13501	3.2990199999999996	4.46303	0.0287874	2.57025e-6	0.128869	8.8687100000000007e-05
chr19	1203479	1203570	17191726	0	+	0.494505	(0.49,0.53]	chr19	1411756	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	STK11:HMGB2P1	ENSG00000118046.16:ENSG00000267736.2	ENST00000585748.2:ENST00000591146.2	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:transcribed_processed_pseudogene	3	43	2	2.13501	3.2990199999999996	4.46303	0.0287874	2.57025e-6	0.128869	8.8687100000000007e-05
chr1	109342013	109342085	1219764	0	-	0.416667	(0.39,0.42]	chr1	118996	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.01677	3.298905	4.58104	0.0235818	1.0275e-6	0.111323	4.08333e-5
chr2	69354488	69354568	2718616	0	-	0.4375	(0.42,0.455]	chr2	242061	1	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.7523	3.29884	3.84538	0.0153283	1.2691e-4	0.0828908	0.00219756
chr17	7657276	7657375	16106191	0	+	0.454545	(0.42,0.455]	chr17	1297135	15	UTR3	UTR3:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.17433	3.2987149999999996	3.4231	0.00112541	3.82052e-4	0.0128481	0.0052929
chr1	162526938	162527037	507532	0	+	0.323232	(0.29,0.33]	chr1	54762	45	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.17855	3.298335	4.41812	0.0183673	0.00162106	0.0928041	0.0161179
chr2	46903665	46903765	2629819	0	-	0.39	(0.36,0.39]	chr2	236786	19	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	3.06114	3.298215	3.53529	1.59276e-4	6.0978e-5	0.00263091	0.00132411
chr1	171592532	171592630	537641	0	+	0.44898	(0.42,0.455]	chr1	57757	8	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.68545	3.29821	3.91097	0.00135767	8.75299e-5	0.0146849	0.0016272
chr8	127738662	127738751	9612654	0	+	0.674157	(0.59,1]	chr8	728490	1	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.77418	3.29798	3.82178	0.0160729	2.76767e-4	0.0860154	0.00409634
chrX	148052317	148052403	18896962	0	+	0.418605	(0.39,0.42]	chrX	1609379	2	EXON_PSEUDO	EXON_PSEUDO	FTH1P8	ENSG00000219507.4	ENST00000498161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	42	2	2.70591	3.2979149999999997	3.88992	0.0185716	4.22388e-6	0.0932453	1.34652e-4
chr4	108622514	108622566	5038309	0	+	0.365385	(0.36,0.39]	chr4	409830	1	CDS	CDS:EXON_MRNA	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5:ENST00000394668.2:ENST00000504231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	91	2	3.14181	3.29791	3.45401	5.20162e-6	8.29134e-7	1.7538e-4	3.4056e-5
chr5	138570963	138571063	6862520	0	-	0.49	(0.455,0.49]	chr5	525242	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	121	2	2.9654	3.297875	3.63035	1.60481e-5	6.77192e-8	4.47832e-4	4.00712e-6
chr19	40751202	40751270	17330800	0	+	0.647059	(0.59,1]	chr19	1436127	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	3.23348	3.297855	3.36223	0.00352837	0.00203572	0.0298518	0.0192213
chr12	34026433	34026529	12822291	0	+	0.3125	(0.29,0.33]	chr12	995601	7	CDS	CDS:UTR3:EXON_MRNA:INTRON	ALG10	ENSG00000139133.7	ENST00000538927.1:ENST00000541875.1:ENST00000266483.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.94844	3.297765	3.64709	0.00217122	3.76873e-4	0.0208941	0.00523508
chr3	113809524	113809621	3676119	0	+	0.350515	(0.33,0.36]	chr3	314510	2	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	64	2	2.77079	3.297675	3.82456	3.4875e-5	9.91401e-6	7.6567e-4	3.00031e-4
chr4	144111329	144111410	5696550	0	-	0.37037	(0.36,0.39]	chr4	451525	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000510771.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	6	72	2	1.81435	3.29764	4.78093	0.0302191	2.24303e-9	0.129773	2.13288e-7
chr17	48059349	48059445	16253369	0	+	0.625	(0.59,1]	chr17	1317132	12	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000581319.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.88006	3.29758	4.7151	0.0554008	0.00412279	0.191173	0.0325842
chr17	27301861	27301956	16170613	0	+	0.473684	(0.455,0.49]	chr17	1304425	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	WSB1	ENSG00000109046.15	ENST00000581440.5:ENST00000578312.5:ENST00000583742.1:ENST00000467843.6:ENST00000579733.5:ENST00000583193.5:ENST00000262394.7:ENST00000427287.6:ENST00000581185.5:ENST00000584354.1:ENST00000583786.5:ENST00000581089.1:ENST00000348811.6:ENST00000582208.1:ENST00000584114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	1.72305	3.297455	4.87186	0.0324537	2.33781e-4	0.134899	0.00385436
chr8	100919202	100919302	9976208	0	-	0.33	(0.29,0.33]	chr8	752728	28	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	243	2	3.27837	3.29699	3.31561	1.11316e-8	2.8277e-9	9.33772e-7	2.59478e-7
chr7	155302250	155302333	8632590	0	+	0.433735	(0.42,0.455]	chr7	659273	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1:ENST00000468307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	243	2	2.60062	3.29683	3.99304	1.5988e-5	5.63807e-11	4.46272e-4	8.16869e-9
chr12	885988	886084	12681430	0	+	0.541667	(0.53,0.59]	chr12	984118	15	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.16037	3.2965799999999996	4.43279	0.0254312	0.0026472	0.117089	0.0231864
chr17	75846133	75846233	16685222	0	-	0.57	(0.53,0.59]	chr17	1373620	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.16037	3.2965799999999996	4.43279	0.0254312	0.0026472	0.117089	0.0231864
chrX	153950812	153950905	19275592	0	-	0.580645	(0.53,0.59]	chrX	1637890	1	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.16037	3.2965799999999996	4.43279	0.0254312	0.0026472	0.117089	0.0231864
chr17	44851178	44851273	16559904	0	-	0.568421	(0.53,0.59]	chr17	1359682	14	UTR3	UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.0404	3.29657	4.55274	0.0362529	0.00167999	0.148525	0.0164993
chr1	1727496	1727595	829150	0	-	0.363636	(0.36,0.39]	chr1	82803	17	INTRON	INTRON	RP1-283E3.8:SLC35E2A	ENSG00000268575.1:ENSG00000215790.8	ENST00000598846.1:ENST00000647043.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	9	72	2	2.78549	3.29648	3.80747	5.70996e-5	1.0137e-6	0.00114991	4.48113e-5
chr2	10126874	10126969	1629016	0	+	0.494737	(0.49,0.53]	chr2	161723	1	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000487591.5:ENST00000462343.1:ENST00000485717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	3.01617	3.29643	3.57669	8.62231e-4	3.59064e-5	0.0100487	8.71318e-4
chr17	41691318	41691414	16226849	0	+	0.510417	(0.49,0.53]	chr17	1312506	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000482111.1:ENST00000310837.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	114	2	2.76018	3.2963899999999997	3.8326	1.35342e-4	3.38813e-8	0.0025037	2.20492e-6
chr1	203869932	203870025	670755	0	+	0.290323	(0.29,0.33]	chr1	67678	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5:ENST00000367208.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	3.05815	3.29637	3.53459	1.75443e-4	1.35827e-5	0.00284534	3.88905e-4
chr6	113944344	113944410	7902966	0	-	0.454545	(0.42,0.455]	chr6	605399	2	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	3.09173	3.2963649999999998	3.501	1.40817e-4	8.62752e-6	0.00258348	2.43605e-4
chr16	578861	578938	15483141	0	+	0.558442	(0.53,0.59]	chr16	1224739	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000409527.6:ENST00000321878.10:ENST00000636657.1:ENST00000026218.9:ENST00000443147.5:ENST00000635909.1:ENST00000636005.1:ENST00000637468.1:ENST00000638143.1:ENST00000635935.1:ENST00000420990.6:ENST00000635205.1:ENST00000480424.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	20	2	3.21941	3.296355	3.3733	0.0529193	0.00266171	0.18423900000000001	0.0240332
chr1	155290374	155290472	1307534	0	-	0.530612	(0.53,0.59]	chr1	132189	12	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	6	76	2	3.24518	3.296265	3.34735	1.46925e-4	1.39722e-5	0.0026854	3.61675e-4
chr19	10317070	10317166	17459300	0	-	0.572917	(0.53,0.59]	chr19	1460720	10	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	76	2	3.24518	3.296265	3.34735	1.46925e-4	1.39722e-5	0.0026854	3.61675e-4
chr18	59328317	59328416	17142316	0	-	0.353535	(0.33,0.36]	chr18	1407602	6	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.7655	3.29619	3.82688	0.0175892	6.67671e-6	0.0918323	1.97539e-4
chr6	166946642	166946739	8083410	0	-	0.350515	(0.33,0.36]	chr6	616976	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.7655	3.29619	3.82688	0.0175892	6.67671e-6	0.0918323	1.97539e-4
chr11	123059784	123059884	12636987	0	-	0.45	(0.42,0.455]	chr11	980717	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	227	2	3.29506	3.2961099999999997	3.29716	6.32415e-8	1.47106e-8	3.77353e-6	1.18213e-6
chr1	110401430	110401522	1222271	0	-	0.391304	(0.39,0.42]	chr1	119458	3	UTR3	UTR3:EXON_MRNA	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000602858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	3.14527	3.295915	3.44656	5.33048e-4	1.26334e-5	0.00742114	3.33251e-4
chr19	9829964	9830008	17223507	0	+	0.386364	(0.36,0.39]	chr19	1418096	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBL5	ENSG00000198258.11	ENST00000358666.7:ENST00000590068.1:ENST00000589960.5:ENST00000593087.1:ENST00000586895.6:ENST00000589372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	39	2	3.10506	3.2958749999999997	3.48669	7.38785e-4	6.40815e-5	0.00924579	0.00125657
chr9	133351261	133351266	10503309	0	+	0.6	(0.59,1]	chr9	794248	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000468019.5:ENST00000315731.4:ENST00000489392.1:ENST00000492798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	3.24972	3.295715	3.34171	0.00314037	0.00234977	0.0264943	0.0222173
chr6	149632837	149632916	8018077	0	-	0.35443	(0.33,0.36]	chr6	612641	2	CDS	CDS:EXON_MRNA:INTRON	KATNA1	ENSG00000186625.14	ENST00000335643.12:ENST00000367411.7:ENST00000335647.9:ENST00000470620.1:ENST00000444282.5:ENST00000420200.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.07736	3.2955699999999997	4.51378	0.0442037	0.00118147	0.172163	0.0127276
chr5	181239066	181239121	7008965	0	-	0.545455	(0.53,0.59]	chr5	537317	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	345	2	2.94263	3.295525	3.64842	3.54569e-7	1.46621e-9	1.85521e-5	1.47714e-7
chr20	58909684	58909744	17841240	0	+	0.566667	(0.53,0.59]	chr20	1508835	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5:ENST00000683632.1:ENST00000684644.1:ENST00000684761.1:ENST00000682590.1:ENST00000684466.1:ENST00000682092.1:ENST00000682986.1:ENST00000475610.2:ENST00000682411.1:ENST00000683932.1:ENST00000682917.1:ENST00000682680.1:ENST00000476196.5:ENST00000494081.5:ENST00000487981.5:ENST00000493958.5:ENST00000656419.1:ENST00000479025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	42	2	1.63267	3.29546	4.95825	0.0170789	2.87508e-4	0.0902695	0.00457439
chr1	112929308	112929352	1232475	0	-	0.272727	[0,0.29]	chr1	120477	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	31	2	3.11986	3.29537	3.47088	0.0015572	1.24857e-4	0.0165415	0.00216685
chr14	58409033	58409133	14652166	0	-	0.43	(0.42,0.455]	chr14	1147547	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000555061.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	46	2	1.67858	3.2953550000000003	4.91213	0.00777101	1.75074e-4	0.0508528	0.00306313
chr20	46634316	46634416	17992517	0	-	0.55	(0.53,0.59]	chr20	1524878	202	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	8	127	2	2.51602	3.295165	4.07431	0.00264912	4.85871e-9	0.024013	4.13544e-7
chr12	54237064	54237163	13342897	0	-	0.474747	(0.455,0.49]	chr12	1049602	57	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.04847	3.295105	4.54174	0.0192065	0.00130137	0.0943643	0.0136936
chr3	98516658	98516758	4318883	0	-	0.5	(0.49,0.53]	chr3	360205	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000513873.1:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000506927.1:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.03065	3.29497	4.55929	0.0189484	0.00116196	0.0958835	0.0130851
chr4	144119781	144119881	5696641	0	-	0.47	(0.455,0.49]	chr4	451550	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000512064.5:ENST00000512789.5:ENST00000504786.5:ENST00000503627.2:ENST00000509346.5:ENST00000514603.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	23	2	1.92777	3.2949349999999997	4.6621	0.0286531	7.84472e-4	0.128685	0.00927662
chr5	150400008	150400108	6294953	0	+	0.47	(0.455,0.49]	chr5	491342	3	UTR3	UTR3:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	1.92777	3.2949349999999997	4.6621	0.0286531	7.84472e-4	0.128685	0.00927662
chr10	119059601	119059659	11717442	0	-	0.534483	(0.53,0.59]	chr10	893818	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2:ENST00000462527.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.90978	3.294855	3.67993	0.00857883	3.22778e-4	0.0552386	0.0046122
chr17	16441925	16442018	16142096	0	+	0.344086	(0.33,0.36]	chr17	1300762	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000658116.1:ENST00000475953.5:ENST00000470491.6:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	21	181	2	2.72997	3.29479	3.85961	1.6364e-5	1.44888e-10	4.55309e-4	1.88334e-8
chr16	56821503	56821593	15680326	0	+	0.422222	(0.42,0.455]	chr16	1246621	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000569842.5:ENST00000569863.5:ENST00000564887.5:ENST00000566727.5:ENST00000567641.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	1.78888	3.2947599999999997	4.80064	0.0259111	3.0479e-4	0.117079	0.00472028
chr1	112659700	112659779	411366	0	+	0.518987	(0.49,0.53]	chr1	40522	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	72	2	2.40248	3.2947249999999997	4.18697	0.00107652	4.38216e-7	0.0118238	2.20292e-5
chr1	150965952	150966049	1291364	0	-	0.515464	(0.49,0.53]	chr1	128670	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	68	2	3.04181	3.2946400000000002	3.54747	1.75203e-4	6.21089e-6	0.00306313	1.85694e-4
chr19	52220978	52221055	17382243	0	+	0.558442	(0.53,0.59]	chr19	1445784	1	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5:ENST00000391791.4	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	3.02054	3.294585	3.56863	0.00577011	3.93456e-5	0.0426551	8.48445e-4
chr19	13154815	13154911	17239967	0	+	0.375	(0.36,0.39]	chr19	1421276	11	UTR3	UTR3:EXON_MRNA	IER2	ENSG00000160888.7	ENST00000292433.4:ENST00000588173.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.78659	3.2944199999999997	3.80225	0.0132982	1.85308e-4	0.0740932	0.00322093
chr3	150542770	150542867	4517204	0	-	0.340206	(0.33,0.36]	chr3	374942	9	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	2.31697	3.294345	4.27172	0.00966431	2.08592e-7	0.0606263	1.05363e-5
chr1	40073577	40073674	954671	0	-	0.42268	(0.42,0.455]	chr1	100850	10	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	3.27707	3.29434	3.31161	0.00207325	0.00186138	0.0194849	0.018635
chrX	16853761	16853842	18971779	0	-	0.432099	(0.42,0.455]	chrX	1615452	2	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	3.27707	3.29434	3.31161	0.00207325	0.00186138	0.0194849	0.018635
chr12	56713553	56713580	13352485	0	-	0.444444	(0.42,0.455]	chr12	1051841	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NACA	ENSG00000196531.14	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	138	2	2.619	3.294325	3.96965	1.03634e-4	2.89292e-9	0.00201586	2.64766e-7
chr1	40071449	40071533	151974	0	+	0.464286	(0.455,0.49]	chr1	19042	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1:ENST00000494114.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.52734	3.294085	4.06083	0.00792433	3.56832e-5	0.0523592	7.81595e-4
chr16	69150622	69150708	15721690	0	+	0.593023	(0.59,1]	chr16	1251825	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000569014.5:ENST00000564408.5:ENST00000569615.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	25	2	2.32455	3.2940449999999997	4.26354	0.0520547	0.0134233	0.193787	0.0743429
chr7	75986668	75986761	8342205	0	+	0.677419	(0.59,1]	chr7	636208	3	UTR3	UTR3:EXON_MRNA	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000439269.1:ENST00000493973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.32455	3.2940449999999997	4.26354	0.0520547	0.0134233	0.193787	0.0743429
chr16	21174078	21174148	15584023	0	+	0.514286	(0.49,0.53]	chr16	1235036	2	CDS	CDS:EXON_MRNA:INTRON	TMEM159	ENSG00000011638.11	ENST00000573487.5:ENST00000572258.5:ENST00000233047.9:ENST00000261388.7:ENST00000451578.6:ENST00000572599.5:ENST00000573688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.3044	3.2938599999999996	4.28332	0.0509448	0.00338762	0.181793	0.0288632
chr16	21403851	21403944	15888069	0	-	0.516129	(0.49,0.53]	chr16	1271076	5	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.3044	3.2938599999999996	4.28332	0.0509448	0.00338762	0.181793	0.0288632
chr22	24101837	24101928	18310938	0	+	0.505495	(0.49,0.53]	chr22	1555823	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:KB-318B8.7	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	16	2	2.3044	3.2938599999999996	4.28332	0.0509448	0.00338762	0.181793	0.0288632
chr11	32931841	32931941	11899045	0	+	0.37	(0.36,0.39]	chr11	909001	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527250.5:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	3.0454	3.29382	3.54224	7.17459e-5	4.51643e-5	0.00151448	9.43703e-4
chr16	29860580	29860662	15911653	0	-	0.548781	(0.53,0.59]	chr16	1274574	1	CDS	CDS:UTR3:EXON_MRNA	CDIPT	ENSG00000103502.14	ENST00000219789.11:ENST00000563893.5:ENST00000561555.5:ENST00000566113.5:ENST00000569956.5:ENST00000570016.5:ENST00000563415.1:ENST00000564296.5:ENST00000562041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.14885	3.2937399999999997	4.43863	0.0262993	0.00254763	0.117164	0.0233955
chr7	75986158	75986245	8342198	0	+	0.563218	(0.53,0.59]	chr7	636204	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000439269.1:ENST00000493973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.14885	3.2937399999999997	4.43863	0.0262993	0.00254763	0.117164	0.0233955
chr2	144400153	144400249	2929354	0	-	0.416667	(0.39,0.42]	chr2	259644	16	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.85416	3.2935499999999998	3.73294	0.0190864	0.00225069	0.0958835	0.021386
chr1	39752909	39752966	151197	0	+	0.508772	(0.49,0.53]	chr1	18839	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr1	51449935	51450035	1015212	0	-	0.53	(0.49,0.53]	chr1	105068	14	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr12	57232424	57232472	12902127	0	+	0.5	(0.49,0.53]	chr12	1005200	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000554656.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000554975.5:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000555213.1:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr17	44148637	44148734	16234177	0	+	0.525773	(0.49,0.53]	chr17	1314360	9	CDS	CDS:EXON_MRNA	HROB	ENSG00000125319.15	ENST00000319977.8:ENST00000585683.6:ENST00000245382.6:ENST00000588434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr2	74834580	74834643	1892843	0	+	0.507937	(0.49,0.53]	chr2	179546	1	CDS_START	CDS_START:CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr2	97793394	97793473	2795430	0	-	0.493671	(0.49,0.53]	chr2	249820	1	CDS	CDS:EXON_MRNA	TMEM131	ENSG00000075568.17	ENST00000186436.10:ENST00000409721.2:ENST00000480724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr3	9428880	9428938	3297843	0	+	0.5	(0.49,0.53]	chr3	289438	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000684606.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000468208.2:ENST00000684055.1:ENST00000407969.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr4	113214259	113214343	5602659	0	-	0.5	(0.49,0.53]	chr4	446963	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	AC004057.1	ENSG00000196656.7	ENST00000485827.1:ENST00000356247.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr7	44624443	44624504	8260481	0	+	0.508197	(0.49,0.53]	chr7	629233	1	CDS	CDS:EXON_MRNA	OGDH	ENSG00000105953.15	ENST00000439616.6:ENST00000443864.6:ENST00000449767.5:ENST00000447398.5:ENST00000419661.5:ENST00000222673.6:ENST00000631326.2:ENST00000444676.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.64528	3.293525	3.94177	0.0202736	0.0104929	0.0984041	0.063428
chr1	89934455	89934554	349108	0	+	0.545455	(0.53,0.59]	chr1	34169	14	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	3.1234	3.293445	3.46349	0.00390623	9.2216e-4	0.0322851	0.0104432
chr4	112788579	112788679	5601617	0	-	0.57	(0.53,0.59]	chr4	446907	6	EXON_PSEUDO	EXON_PSEUDO	RPL7AP30	ENSG00000241741.1	ENST00000482859.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	3.1234	3.293445	3.46349	0.00390623	9.2216e-4	0.0322851	0.0104432
chr20	17659973	17660059	17916323	0	-	0.534884	(0.53,0.59]	chr20	1516287	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RRBP1	ENSG00000125844.16	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000398782.2	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.15403	3.2934099999999997	4.43279	0.0118065	0.0026472	0.0686664	0.0231864
chrX	48915335	48915392	19063625	0	-	0.54386	(0.53,0.59]	chrX	1620598	2	CDS	CDS:UTR5:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.15403	3.2934099999999997	4.43279	0.0118065	0.0026472	0.0686664	0.0231864
chr3	161238112	161238191	3857794	0	+	0.379747	(0.36,0.39]	chr3	327622	1	CDS	CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000493066.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.99086	3.293295	3.59573	3.25198e-4	3.19976e-5	0.00500369	7.1032e-4
chr11	205102	205201	12225515	0	-	0.525253	(0.49,0.53]	chr11	943038	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BET1L	ENSG00000177951.17	ENST00000410108.5:ENST00000325147.13:ENST00000382762.7:ENST00000529614.6:ENST00000332865.10:ENST00000486280.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.90685	3.293285	4.67972	0.0534351	6.94757e-4	0.184995	0.00876781
chr7	45109237	45109287	8801075	0	-	0.52	(0.49,0.53]	chr7	671580	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000478532.5:ENST00000461363.1:ENST00000471142.5:ENST00000475893.1:ENST00000482285.1:ENST00000495078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	1.90685	3.293285	4.67972	0.0534351	6.94757e-4	0.184995	0.00876781
chr5	154816727	154816825	6315038	0	+	0.510204	(0.49,0.53]	chr5	492515	28	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.69746	3.293165	3.88887	0.00380414	9.98984e-5	0.0317723	0.00180257
chr15	44561149	44561246	14899890	0	+	0.381443	(0.36,0.39]	chr15	1171685	1	UTR3	UTR3:EXON_MRNA	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	62	2	2.02273	3.29309	4.56345	0.00135588	1.14615e-6	0.0141042	4.93609e-5
chr14	69885428	69885517	14688043	0	-	0.505618	(0.49,0.53]	chr14	1150336	2	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	131	2	2.92632	3.2927999999999997	3.65928	6.09881e-6	1.57096e-7	2.00264e-4	8.2517e-6
chr19	39398055	39398154	17325993	0	+	0.414141	(0.39,0.42]	chr19	1434806	4	UTR3	UTR3:EXON_MRNA	MED29	ENSG00000063322.15	ENST00000599417.2:ENST00000615911.4:ENST00000315588.11:ENST00000594368.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.62131	3.2927049999999998	3.9641	0.00609677	6.346e-5	0.0439136	0.00124725
chr2	108764821	108764920	1982956	0	+	0.363636	(0.36,0.39]	chr2	188310	17	CDS	CDS:EXON_MRNA	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.18642	3.292225	3.39803	0.00359152	0.00122711	0.0302391	0.0130695
chr12	56132718	56132801	12898290	0	+	0.518072	(0.49,0.53]	chr12	1004236	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.69746	3.2920499999999997	3.88664	0.00380414	4.62391e-7	0.0317723	2.06661e-5
chr12	132079464	132079564	13160958	0	+	0.35	(0.33,0.36]	chr12	1028841	19	UTR3	UTR3:EXON_MRNA	EP400	ENSG00000183495.14	ENST00000389561.7:ENST00000330386.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.7655	3.2919099999999997	3.81832	0.0175892	0.0135793	0.0918323	0.0745701
chr15	60347331	60347430	15316691	0	-	0.353535	(0.33,0.36]	chr15	1208909	3	UTR3	UTR3:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.7655	3.2919099999999997	3.81832	0.0175892	0.0135793	0.0918323	0.0745701
chr17	1376339	1376439	16398701	0	-	0.36	(0.33,0.36]	chr17	1334273	62	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1:ENST00000489287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.7655	3.2919099999999997	3.81832	0.0175892	0.0135793	0.0918323	0.0745701
chr4	56501956	56502052	4849148	0	+	0.385417	(0.36,0.39]	chr4	399579	2	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	57	2	2.9102	3.29188	3.67356	5.15161e-4	2.37283e-6	0.00719513	8.2933e-5
chr16	53156671	53156768	15665896	0	+	0.350515	(0.33,0.36]	chr16	1245065	6	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.36984	3.291725	4.21361	0.00564505	1.64389e-5	0.041184	4.56784e-4
chr16	88647100	88647175	16073973	0	-	0.653333	(0.59,1]	chr16	1291444	1	CDS	CDS:EXON_MRNA	CYBA	ENSG00000051523.11	ENST00000261623.8:ENST00000566534.5:ENST00000566229.1:ENST00000567174.5:ENST00000569359.5:ENST00000563526.5:ENST00000568278.1:ENST00000562209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	114	2	3.01432	3.291675	3.56903	0.00121259	1.41433e-5	0.0135383	3.65833e-4
chr10	124401725	124401782	11729295	0	-	0.631579	(0.59,1]	chr10	895054	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1:ENST00000467675.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	2.9891200000000002	3.291665	3.59421	0.00823979	6.47795e-5	0.0540283	0.00126536
chr8	21998754	21998837	9222063	0	+	0.46988	(0.455,0.49]	chr8	705028	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000517551.2	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.85172	3.29157	3.73142	0.010864	2.35261e-4	0.0643837	0.00356397
chr6	30688760	30688851	7658946	0	-	0.626374	(0.59,1]	chr6	584181	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	75	2	2.25872	3.29139	4.32406	0.0193473	2.43308e-5	0.0969537	6.29277e-4
chr16	2253896	2253979	15825204	0	-	0.506024	(0.49,0.53]	chr16	1262341	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5:ENST00000568631.5:ENST00000569598.6:ENST00000301730.12:ENST00000567147.5:ENST00000565243.2:ENST00000565870.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	72	2	2.75215	3.29138	3.83061	8.79689e-4	7.2439e-7	0.0107294	3.03284e-5
chr19	49851243	49851328	17373138	0	+	0.858824	(0.59,1]	chr19	1443842	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTOV1	ENSG00000104960.15	ENST00000601612.5:ENST00000594151.5:ENST00000600603.5:ENST00000601638.5:ENST00000598632.5:ENST00000601501.5:ENST00000594165.5:ENST00000598325.5:ENST00000391842.5:ENST00000599732.5:ENST00000601675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	25	2	2.59461	3.29106	3.98751	0.0301044	0.0259455	0.129773	0.117079
chr9	136418016	136418109	10512258	0	+	0.591398	(0.59,1]	chr9	796202	1	CDS	CDS:EXON_MRNA	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.59461	3.29106	3.98751	0.0301044	0.0259455	0.129773	0.117079
chr13	27621846	27621914	13658089	0	+	0.691176	(0.59,1]	chr13	1076500	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	POLR1D	ENSG00000186184.19	ENST00000627604.1:ENST00000626064.1:ENST00000637180.1:ENST00000621089.2:ENST00000637389.1:ENST00000399697.7:ENST00000489647.4:ENST00000636817.1:ENST00000630983.1:ENST00000465887.2:ENST00000302979.5:ENST00000637071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.61074	3.29096	3.97118	0.025486	1.3379e-4	0.117089	0.00229039
chr1	172441828	172441927	1369788	0	-	0.50505	(0.49,0.53]	chr1	139583	1	CDS	CDS:EXON_MRNA:INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1:ENST00000367728.1:ENST00000344529.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	3.15207	3.2908049999999998	3.42954	0.00347189	0.00105489	0.0286293	0.0123035
chr3	17160669	17160767	4059127	0	-	0.510204	(0.49,0.53]	chr3	341127	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	3.15207	3.2908049999999998	3.42954	0.00347189	0.00105489	0.0286293	0.0123035
chr4	169697279	169697370	5217959	0	+	0.395604	(0.39,0.42]	chr4	420911	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	3.27036	3.29073	3.3111	2.11919e-4	1.09752e-5	0.00357806	2.97332e-4
chr1	169477412	169477498	1358220	0	-	0.5	(0.49,0.53]	chr1	138672	4	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.23006	3.290695	3.35133	0.00253719	0.00150139	0.0233955	0.0152367
chr12	74539889	74539988	12961058	0	+	0.636364	(0.59,1]	chr12	1010219	16	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	2.20941	3.29042	4.37143	0.00355442	1.58503e-5	0.0300236	4.03494e-4
chr3	195782263	195782363	4661089	0	-	0.58	(0.53,0.59]	chr3	385270	36	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.14205	3.2903399999999996	4.43863	0.0123179	0.00254763	0.070688	0.0233955
chr1	32316723	32316782	128356	0	+	0.491525	(0.49,0.53]	chr1	15911	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.45798	3.290305	4.12263	0.00591451	0.00353238	0.0427941	0.029076
chr20	38952715	38952813	17787117	0	+	0.346939	(0.33,0.36]	chr20	1503191	3	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	3.20887	3.29013	3.37139	1.76058e-5	2.46591e-6	4.39493e-4	9.42302e-5
chr14	102002536	102002619	14495349	0	+	0.457831	(0.455,0.49]	chr14	1133051	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	3.01932	3.2898449999999997	3.56037	5.72551e-4	2.37034e-5	0.0078026	5.60012e-4
chr1	65415117	65415217	251478	0	+	0.26	[0,0.29]	chr1	28747	22	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	3.28583	3.289755	3.29368	0.00346525	4.04464e-5	0.0293796	8.69119e-4
chr13	72710027	72710125	14070870	0	-	0.27551	[0,0.29]	chr13	1101984	18	UTR3	UTR3:EXON_MRNA	MZT1	ENSG00000204899.6	ENST00000377818.4	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	3.28583	3.289755	3.29368	0.00346525	4.04464e-5	0.0293796	8.69119e-4
chr15	64072564	64072655	15339046	0	-	0.274725	[0,0.29]	chr15	1210824	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000558779.1:ENST00000380290.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	3.28583	3.289755	3.29368	0.00346525	4.04464e-5	0.0293796	8.69119e-4
chr1	150308228	150308321	466560	0	+	0.473118	(0.455,0.49]	chr1	47117	1	UTR3	UTR3:EXON_MRNA	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	12	119	2	2.72655	3.289575	3.8526	4.7714e-5	2.65694e-8	0.00109049	1.79757e-6
chr15	63590826	63590923	14973969	0	+	0.329897	(0.29,0.33]	chr15	1176970	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5:ENST00000558218.5:ENST00000561381.5:ENST00000559718.1:ENST00000560202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	3.13212	3.289545	3.44697	0.00551048	0.00101442	0.0414592	0.0112862
chr5	37288334	37288433	6539906	0	-	0.343434	(0.33,0.36]	chr5	506493	3	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	1.81839	3.289345	4.7603	0.0087551	2.59825e-7	0.0562439	1.42404e-5
chr15	29708844	29708940	15183864	0	-	0.4375	(0.42,0.455]	chr15	1195093	4	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.72686	3.28918	3.8515	0.0119089	0.00330337	0.0686664	0.027613
chrX	70134718	70134816	18726607	0	+	0.438776	(0.42,0.455]	chrX	1597507	3	CDS	CDS:EXON_MRNA	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.72686	3.28918	3.8515	0.0119089	0.00330337	0.0686664	0.027613
chr21	34086494	34086594	18104880	0	+	0.37	(0.36,0.39]	chr21	1534976	124	INTRON	INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	18	2	2.336	3.28897	4.24194	0.0154226	0.00276729	0.0834369	0.0247437
chr21	43693782	43693882	18135732	0	+	0.39	(0.36,0.39]	chr21	1538248	5	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.336	3.28897	4.24194	0.0154226	0.00276729	0.0834369	0.0247437
chr5	69104630	69104716	6018971	0	+	0.383721	(0.36,0.39]	chr5	471140	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	SLC30A5	ENSG00000145740.19	ENST00000621204.4:ENST00000380860.8:ENST00000396591.8:ENST00000504103.5:ENST00000507354.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.336	3.28897	4.24194	0.0154226	0.00276729	0.0834369	0.0247437
chr7	12232074	12232174	8134842	0	+	0.35	(0.33,0.36]	chr7	621602	2	UTR3	UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000396668.8:ENST00000396667.7:ENST00000462754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.07736	3.2885799999999996	4.4998	0.0442037	1.74876e-6	0.172163	6.39864e-5
chr7	130173824	130173881	9063220	0	-	0.403509	(0.39,0.42]	chr7	692149	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.66154	3.2885549999999997	4.91557	0.0452475	7.36997e-8	0.174743	4.29759e-6
chr9	30690077	30690174	10232375	0	+	0.484536	(0.455,0.49]	chr9	769053	11	EXON_PSEUDO	EXON_PSEUDO	RBMXP2	ENSG00000215210.3	ENST00000434705.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	34	2	2.84079	3.28834	3.73589	0.00201021	2.30579e-4	0.0190112	0.00382267
chr6	31782284	31782363	7662436	0	-	0.64557	(0.59,1]	chr6	585287	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1:ENST00000461874.1:ENST00000474643.5:ENST00000483275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	52	2	2.92097	3.28803	3.65509	0.0102634	5.95213e-4	0.0628742	0.00746384
chr3	33825186	33825240	3399460	0	+	0.351852	(0.33,0.36]	chr3	295670	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000484478.5:ENST00000494810.1:ENST00000459659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	3.25272	3.28771	3.3227	0.00222616	2.63256e-4	0.0211992	0.00393206
chr17	77216256	77216353	16362231	0	+	0.525773	(0.49,0.53]	chr17	1329013	24	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.49797	3.28758	4.07719	0.00843736	0.0074411	0.0546021	0.0492519
chr8	47840102	47840189	9816170	0	-	0.321839	(0.29,0.33]	chr8	742633	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	9	47	2	2.12082	3.28738	4.45394	0.00148642	3.60081e-6	0.0151359	1.29307e-4
chr2	130347267	130347367	2061583	0	+	0.37	(0.36,0.39]	chr2	193625	9	UTR3	UTR3:EXON_MRNA	IMP4	ENSG00000136718.10	ENST00000462392.5:ENST00000259239.8:ENST00000460766.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.54205	3.2871249999999996	4.0322	0.00588589	0.00253891	0.0427941	0.0227257
chr10	68755452	68755536	11091533	0	+	0.416667	(0.39,0.42]	chr10	843009	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000483264.1:ENST00000479143.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	2.01677	3.287	4.55723	0.0235818	0.00117753	0.111323	0.0127276
chr17	7240665	7240759	16429074	0	-	0.489362	(0.455,0.49]	chr17	1339315	8	UTR3	UTR3:EXON_MRNA	GABARAP:CTD-2545G14.7	ENSG00000170296.10:ENSG00000262526.2	ENST00000302386.10:ENST00000577035.5:ENST00000570760.2:ENST00000570856.1:ENST00000571129.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	91	2	2.24425	3.287	4.32975	3.51222e-4	1.27857e-7	0.00492346	7.7505e-6
chr7	140704859	140704934	8569947	0	+	0.466667	(0.455,0.49]	chr7	654015	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000465506.5:ENST00000247866.9:ENST00000464564.6:ENST00000476181.5:ENST00000464566.5:ENST00000460088.5:ENST00000472695.5:ENST00000476470.5:ENST00000471136.5:ENST00000475276.1:ENST00000479181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	3.11002	3.286955	3.46389	9.14164e-4	1.15314e-4	0.0110519	0.0020426
chr14	55229216	55229309	14298329	0	+	0.462366	(0.455,0.49]	chr14	1117596	1	EXON_PSEUDO	EXON_PSEUDO	RP11-665C16.9	ENSG00000279392.1	ENST00000623123.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	27	2	2.83792	3.286905	3.73589	0.0110512	2.30579e-4	0.0665375	0.00382267
chr11	18394559	18394640	11831411	0	+	0.691358	(0.59,1]	chr11	905979	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000469976.2:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000494573.6:ENST00000535451.5:ENST00000227157.8:ENST00000478970.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	478	2	3.21016	3.28679	3.36342	9.62365e-7	3.84252e-7	4.28871e-5	1.76177e-5
chr17	48057343	48057412	16253346	0	+	0.492754	(0.49,0.53]	chr17	1317125	1	CDS	CDS:UTR5:EXON_MRNA	NFE2L1	ENSG00000082641.16	ENST00000362042.8:ENST00000585291.5:ENST00000357480.9:ENST00000361665.7:ENST00000583210.5:ENST00000577411.5:ENST00000584634.5:ENST00000582155.5:ENST00000583378.5:ENST00000536222.5:ENST00000577431.1:ENST00000580037.1	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.56183	3.2867699999999997	4.01171	0.0261296	4.88513e-5	0.118976	0.00100497
chr3	185491439	185491536	4625816	0	-	0.42268	(0.42,0.455]	chr3	382039	20	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	2.91373	3.2867550000000003	3.65978	0.00892357	2.09396e-5	0.0567495	5.04211e-4
chr1	16393227	16393312	72926	0	+	0.576471	(0.53,0.59]	chr1	8459	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SZRD1	ENSG00000055070.17	ENST00000475078.1:ENST00000471507.5:ENST00000401089.3:ENST00000486763.5:ENST00000401088.9:ENST00000475554.5:ENST00000476423.5:ENST00000472351.5:ENST00000492354.1:ENST00000472461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.27113	3.2865399999999996	4.30195	0.0178853	0.00421989	0.0918323	0.0328662
chr14	20455577	20455645	14171261	0	+	0.573529	(0.53,0.59]	chr14	1109100	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000556296.1:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555306.5:ENST00000557344.5:ENST00000557181.5:ENST00000554325.1:ENST00000555839.5:ENST00000557159.5:ENST00000553368.1:ENST00000557054.1:ENST00000556054.5:ENST00000557592.5:ENST00000557365.1:ENST00000557150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.27113	3.2865399999999996	4.30195	0.0178853	0.00421989	0.0918323	0.0328662
chr15	58013932	58013998	15305712	0	-	0.545455	(0.53,0.59]	chr15	1208151	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000559266.5:ENST00000561070.5:ENST00000558595.5:ENST00000558239.5:ENST00000557967.5:ENST00000558073.5:ENST00000559297.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	1.90953	3.286505	4.66348	0.0517711	0.00107799	0.193577	0.0118238
chr10	35569070	35569170	11009979	0	+	0.57	(0.53,0.59]	chr10	837263	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.7542	3.2865	3.8188	3.14256e-4	1.54941e-4	0.00452711	0.0028049
chrX	48523771	48523871	18691803	0	+	0.56	(0.53,0.59]	chrX	1594130	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	2.01641	3.2864050000000002	4.5564	0.0108917	1.54434e-6	0.0645168	5.75816e-5
chr6	2833783	2833859	7570211	0	-	0.381579	(0.36,0.39]	chr6	577589	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	3.24025	3.28633	3.33241	0.00193631	2.74161e-4	0.0192272	0.00406677
chr15	90966398	90966488	15439133	0	-	0.555556	(0.53,0.59]	chr15	1221335	5	UTR3	UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	73	2	2.76647	3.286285	3.8061	2.92577e-4	8.37944e-6	0.00464297	2.38248e-4
chr11	838743	838835	11759172	0	+	0.48913	(0.455,0.49]	chr11	898603	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CD151	ENSG00000177697.19	ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000532045.6:ENST00000530726.5:ENST00000528011.2:ENST00000525181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.9967	3.285975	3.57525	0.00650423	5.24878e-4	0.0454205	0.00677371
chr11	85021558	85021655	12518030	0	-	0.474227	(0.455,0.49]	chr11	971919	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	DLG2:HNRNPCP6	ENSG00000150672.18:ENSG00000213305.3	ENST00000376104.7:ENST00000650630.1:ENST00000527088.1:ENST00000525816.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	27	2	2.9967	3.285975	3.57525	0.00650423	5.24878e-4	0.0454205	0.00677371
chr11	14461185	14461258	12281587	0	-	0.452055	(0.42,0.455]	chr11	949584	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COPB1	ENSG00000129083.13	ENST00000525214.1:ENST00000249923.7:ENST00000439561.7:ENST00000526527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	78	2	3.19078	3.2859550000000004	3.38113	0.00310864	6.07935e-7	0.0274272	2.6172e-5
chrX	153696293	153696391	18915654	0	+	0.653061	(0.59,1]	chrX	1611204	12	UTR3	UTR3:EXON_MRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	3.15632	3.2858400000000003	3.41536	0.00164655	6.43048e-4	0.0163443	0.00850474
chr1	92833621	92833660	354069	0	+	0.358974	(0.33,0.36]	chr1	34816	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000646852.1:ENST00000315741.5:ENST00000461952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	51	2	2.49939	3.285775	4.07216	6.86704e-4	1.48724e-6	0.00839272	6.14163e-5
chr17	42521226	42521323	16228819	0	+	0.484536	(0.455,0.49]	chr17	1313004	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000586201.5:ENST00000585828.5:ENST00000592831.1:ENST00000587797.1:ENST00000587299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	2.53778	3.285635	4.03349	0.00105636	4.13044e-5	0.0117237	9.71332e-4
chr3	143972617	143972710	3793966	0	+	0.752688	(0.59,1]	chr3	324036	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000491798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	25	2	2.42639	3.28561	4.14483	0.0409084	0.0183207	0.163285	0.0945306
chrX	154488175	154488270	19278515	0	-	0.610526	(0.59,1]	chrX	1638472	7	CDS	CDS:EXON_MRNA	SLC10A3	ENSG00000126903.16	ENST00000263512.5:ENST00000369649.8:ENST00000651600.1:ENST00000393586.1:ENST00000393587.4	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.42639	3.28561	4.14483	0.0409084	0.0183207	0.163285	0.0945306
chr4	73076033	73076131	5465964	0	-	0.408163	(0.39,0.42]	chr4	437721	28	UTR3	UTR3:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.71912	3.285595	3.85207	0.0163125	1.28587e-4	0.0866586	0.00241206
chr2	199270951	199271048	3114501	0	-	0.453608	(0.42,0.455]	chr2	274929	16	UTR3	UTR3:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.06293	3.28559	3.50825	0.00492128	5.86898e-5	0.0366648	0.00129243
chr1	149813270	149813370	1286916	0	-	0.64	(0.59,1]	chr1	127823	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H3C13	ENSG00000183598.4	ENST00000331491.2	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	3.05674	3.285285	3.51383	9.4094e-4	1.11838e-4	0.0106352	0.00213742
chr9	128998537	128998623	10482759	0	+	0.569767	(0.53,0.59]	chr9	791135	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000495726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	3.18707	3.2852699999999997	3.38347	0.00132446	3.55681e-4	0.0138834	0.00539248
chr12	6940951	6941023	12715684	0	+	0.555556	(0.53,0.59]	chr12	987318	2	CDS	CDS:EXON_MRNA	ATN1	ENSG00000111676.15	ENST00000356654.8:ENST00000396684.3:ENST00000537488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.64475	3.28524	3.92573	0.00453071	8.62301e-5	0.0351187	0.00160749
chr8	100919599	100919699	9976212	0	-	0.28	[0,0.29]	chr8	752728	32	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	178	2	3.07507	3.2851350000000004	3.4952	7.21381e-8	2.97595e-9	4.22064e-6	2.95435e-7
chr9	99222545	99222643	10383978	0	+	0.704082	(0.59,1]	chr9	782326	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5:ENST00000481573.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	3.1277	3.28504	3.44238	0.00490589	0.00158239	0.0366648	0.0167793
chr10	46015125	46015196	11471029	0	-	0.464789	(0.455,0.49]	chr10	874868	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.83859	3.285005	3.73142	0.00215336	2.35261e-4	0.0208395	0.00356397
chr3	45744522	45744621	3450172	0	+	0.414141	(0.39,0.42]	chr3	300538	9	UTR3	UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000672477.1:ENST00000389061.10:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.88836	3.2849500000000003	3.68154	0.0102432	3.05414e-4	0.062872	0.00442973
chr5	73498667	73498767	6032139	0	+	0.73	(0.59,1]	chr5	473073	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000512257.1:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000510787.6:ENST00000507081.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.30623	3.284885	4.26354	0.0170607	0.0134233	0.0896731	0.0743429
chr1	151168985	151169085	470691	0	+	0.49	(0.455,0.49]	chr1	47955	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SCNM1	ENSG00000163156.12	ENST00000602841.5:ENST00000368902.1:ENST00000368905.9:ENST00000497147.1:ENST00000459799.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.85172	3.2848499999999996	3.71798	0.0202679	0.010864	0.0984041	0.0643837
chr4	6621482	6621581	4704202	0	+	0.474747	(0.455,0.49]	chr4	390522	3	UTR3	UTR3:EXON_MRNA	MAN2B2	ENSG00000013288.9	ENST00000285599.8:ENST00000505907.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.85172	3.2848499999999996	3.71798	0.0202679	0.010864	0.0984041	0.0643837
chr6	26687293	26687389	7103053	0	+	0.458333	(0.455,0.49]	chr6	543244	12	EXON_LNCRNA	EXON_LNCRNA	RP11-457M11.5	ENSG00000261584.1	ENST00000562904.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.85172	3.2848499999999996	3.71798	0.0202679	0.010864	0.0984041	0.0643837
chr7	23347666	23347734	8724575	0	-	0.485294	(0.455,0.49]	chr7	666058	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6:ENST00000467592.5:ENST00000497563.5:ENST00000480547.5:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.85172	3.2848499999999996	3.71798	0.0202679	0.010864	0.0984041	0.0643837
chr19	6380102	6380191	17442010	0	-	0.58427	(0.53,0.59]	chr19	1456697	7	UTR3	UTR3:EXON_MRNA	GTF2F1	ENSG00000125651.14	ENST00000394456.10:ENST00000593678.5:ENST00000594213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	3.17542	3.28479	3.39416	0.00126006	3.78824e-4	0.013837	0.00525548
chr9	109087257	109087342	10788458	0	-	0.423529	(0.42,0.455]	chr9	816877	2	CDS	CDS:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	62	2	2.47291	3.2847600000000003	4.09661	2.48605e-4	2.79795e-5	0.00375438	7.07527e-4
chr3	40311520	40311571	3429111	0	+	0.411765	(0.39,0.42]	chr3	298219	2	CDS	CDS:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000488260.1:ENST00000487151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.48229	3.284655	4.08702	8.62602e-4	3.01232e-5	0.0105966	6.78876e-4
chr3	13335453	13335532	4046388	0	-	0.607595	(0.59,1]	chr3	339576	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	107	2	2.77418	3.2846	3.79502	0.0160729	3.47072e-6	0.0860154	1.13687e-4
chr17	1354210	1354297	16398471	0	-	0.425287	(0.42,0.455]	chr17	1334244	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	174	2	2.84067	3.284555	3.72844	1.20908e-5	2.731e-9	3.52568e-4	2.53367e-7
chr18	45984431	45984530	17102848	0	-	0.333333	(0.33,0.36]	chr18	1404258	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSTPIP2	ENSG00000152229.18	ENST00000409746.5:ENST00000589328.5:ENST00000588801.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	2.17058	3.284475	4.39837	0.01664	3.65455e-6	0.0878065	1.19215e-4
chr11	5300020	5300119	12241086	0	-	0.363636	(0.36,0.39]	chr11	946132	78	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	37	2	2.29974	3.28445	4.26916	0.00926291	9.09682e-6	0.0586162	2.53877e-4
chr5	134200334	134200415	6844141	0	-	0.45679	(0.455,0.49]	chr5	523679	1	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.45014	3.2843500000000003	4.1185600000000004	0.00397453	2.49433e-5	0.0322851	5.8178e-4
chr18	31542602	31542685	16809124	0	+	0.46988	(0.455,0.49]	chr18	1386474	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.75587	3.2843099999999996	3.81275	0.0138827	0.00293507	0.0760883	0.025146
chr2	86466627	86466712	1927190	0	+	0.470588	(0.455,0.49]	chr2	181611	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000488971.1:ENST00000485171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.75587	3.2843099999999996	3.81275	0.0138827	0.00293507	0.0760883	0.025146
chr3	52694944	52695035	4184949	0	-	0.461538	(0.455,0.49]	chr3	353150	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GLT8D1	ENSG00000016864.19	ENST00000266014.11:ENST00000478968.6:ENST00000394783.7:ENST00000491606.5:ENST00000481643.5:ENST00000484163.5:ENST00000463827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.75587	3.2843099999999996	3.81275	0.0138827	0.00293507	0.0760883	0.025146
chr5	10290762	10290781	6447006	0	-	0.473684	(0.455,0.49]	chr5	502191	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.75587	3.2843099999999996	3.81275	0.0138827	0.00293507	0.0760883	0.025146
chr8	94511995	94512089	9960220	0	-	0.478723	(0.455,0.49]	chr8	751287	1	CDS	CDS:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.75587	3.2843099999999996	3.81275	0.0138827	0.00293507	0.0760883	0.025146
chr16	69757656	69757750	15995194	0	-	0.43617	(0.42,0.455]	chr16	1284292	13	EXON_PSEUDO	EXON_PSEUDO	CTD-2033A16.2	ENSG00000260290.2	ENST00000566277.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	63	2	2.54082	3.2842700000000002	4.02772	1.61532e-4	4.30844e-5	0.00265627	0.00100091
chr17	78117467	78117555	16693085	0	-	0.613636	(0.59,1]	chr17	1375207	1	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	232	2	1.22565	3.284175	5.3427	0.0501253	4.88322e-10	0.188029	5.56818e-8
chr12	110322991	110323072	13085660	0	+	0.395062	(0.39,0.42]	chr12	1020486	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	75	2	3.2648	3.284165	3.30353	3.96559e-5	3.84212e-6	9.4815e-4	1.24728e-4
chr1	6235811	6235911	842698	0	-	0.77	(0.59,1]	chr1	84969	1	CDS_START	CDS_START:CDS:EXON_MRNA	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5:ENST00000474756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	26	2	2.69477	3.28405	3.87333	0.0348991	0.020208	0.141505	0.0978331
chr16	28731919	28732010	15619302	0	+	0.681319	(0.59,1]	chr16	1238317	2	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	26	2	2.69477	3.28405	3.87333	0.0348991	0.020208	0.141505	0.0978331
chr7	73206528	73206622	8331587	0	+	0.308511	(0.29,0.33]	chr7	634360	5	EXON_LNCRNA	EXON_LNCRNA	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	21	2	2.92065	3.2838700000000003	3.64709	0.0117842	3.76873e-4	0.0686664	0.00523508
chr17	82717760	82717851	16385051	0	+	0.56044	(0.53,0.59]	chr17	1332775	5	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	1.89806	3.28371	4.66936	0.0532477	0.00103174	0.184818	0.0121443
chr3	33072543	33072598	4111724	0	-	0.581818	(0.53,0.59]	chr3	343541	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	1.89806	3.28371	4.66936	0.0532477	0.00103174	0.184818	0.0121443
chr3	14135806	14135857	3319427	0	+	0.627451	(0.59,1]	chr3	292085	1	CDS	CDS:EXON_MRNA	TMEM43:RP11-434D12.1	ENSG00000170876.8:ENSG00000268279.4	ENST00000306077.5:ENST00000608606.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.63214	3.2837	3.93526	0.005622	1.599e-4	0.0421873	0.00263454
chr1	154270295	154270388	480157	0	+	0.548387	(0.53,0.59]	chr1	49745	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.2596	3.28368	4.30776	0.0185443	0.00407289	0.0948733	0.0324137
chr11	14520372	14520445	12282227	0	-	0.575342	(0.53,0.59]	chr11	949745	2	UTR5	UTR5:EXON_MRNA:INTRON	PSMA1	ENSG00000129084.18	ENST00000396394.7:ENST00000418988.2:ENST00000533331.5:ENST00000533068.5:ENST00000532256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.2596	3.28368	4.30776	0.0185443	0.00407289	0.0948733	0.0324137
chr3	182920649	182920747	3944924	0	+	0.540816	(0.53,0.59]	chr3	331294	27	UTR3	UTR3:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.2596	3.28368	4.30776	0.0185443	0.00407289	0.0948733	0.0324137
chr18	59345918	59345984	17142499	0	-	0.484848	(0.455,0.49]	chr18	1407629	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587940.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	127	2	3.0258	3.283665	3.54153	6.21073e-5	3.05327e-8	0.00134149	2.02979e-6
chr11	57804721	57804780	11953108	0	+	0.457627	(0.455,0.49]	chr11	914836	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr11	62705300	62705356	12410454	0	-	0.482143	(0.455,0.49]	chr11	961459	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	BSCL2:HNRNPUL2-BSCL2	ENSG00000168000.16:ENSG00000234857.2	ENST00000683892.1:ENST00000684475.1:ENST00000684285.1:ENST00000682555.1:ENST00000682262.1:ENST00000684115.1:ENST00000683025.1:ENST00000449636.6:ENST00000403734.2:ENST00000679883.1:ENST00000405837.5:ENST00000683296.1:ENST00000360796.10:ENST00000278893.11:ENST00000684067.1:ENST00000683494.1:ENST00000524862.6:ENST00000407022.7:ENST00000403550.5:ENST00000301781.10:ENST00000421906.5:ENST00000682794.1:ENST00000682223.1:ENST00000684609.1:ENST00000684720.1:ENST00000682644.1:ENST00000448568.6:ENST00000531524.5:ENST00000537604.5:ENST00000530900.1:ENST00000533982.1:ENST00000532818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr11	68165813	68165913	12431476	0	-	0.49	(0.455,0.49]	chr11	966054	2	UTR3	UTR3:EXON_MRNA:INTRON	KMT5B	ENSG00000110066.15	ENST00000304363.9:ENST00000615954.4:ENST00000441488.6:ENST00000427752.6:ENST00000405515.5:ENST00000401547.6:ENST00000402789.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr12	32731355	32731433	12821994	0	+	0.461538	(0.455,0.49]	chr12	995526	1	CDS	CDS:UTR3:EXON_MRNA	DNM1L	ENSG00000087470.19	ENST00000414834.6:ENST00000452533.6:ENST00000358214.9:ENST00000553257.6:ENST00000549701.6:ENST00000266481.10:ENST00000546649.5:ENST00000547312.5:ENST00000413295.6:ENST00000381000.8:ENST00000546757.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr12	120095780	120095878	13578748	0	-	0.469388	(0.455,0.49]	chr12	1068479	8	UTR3	UTR3:EXON_MRNA	RAB35	ENSG00000111737.12	ENST00000229340.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr14	22951647	22951689	14528063	0	-	0.47619	(0.455,0.49]	chr14	1138223	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HAUS4:RP11-298I3.5	ENSG00000092036.19:ENSG00000259132.1	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000554446.5:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555074.1:ENST00000555986.5:ENST00000553859.5:ENST00000555040.5:ENST00000556915.5:ENST00000554349.5:ENST00000553794.5:ENST00000554373.5:ENST00000554651.5:ENST00000554516.5:ENST00000557591.5:ENST00000553420.1:ENST00000554406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr17	45023637	45023736	16560942	0	-	0.474747	(0.455,0.49]	chr17	1359989	4	UTR3	UTR3:EXON_MRNA	DCAKD	ENSG00000172992.12	ENST00000452796.6:ENST00000342350.9:ENST00000651974.1:ENST00000310604.8:ENST00000614054.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr18	2937777	2937864	16984986	0	-	0.482759	(0.455,0.49]	chr18	1396530	2	CDS	CDS:EXON_MRNA	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr3	49098884	49098936	4172436	0	-	0.480769	(0.455,0.49]	chr3	350343	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000634473.1:ENST00000464962.6:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000466179.2:ENST00000637543.1:ENST00000637908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr6	5260733	5260805	7580849	0	-	0.472222	(0.455,0.49]	chr6	578388	1	UTR5	UTR5:EXON_MRNA	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000480566.5:ENST00000500576.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.30139	3.2836600000000002	4.26593	0.0530131	0.00372962	0.195536	0.0302984
chr6	38676315	38676413	7689633	0	-	0.408163	(0.39,0.42]	chr6	589572	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	139	2	2.9498	3.28362	3.61744	8.02223e-7	6.59759e-7	3.67382e-5	2.80979e-5
chr1	63411145	63411238	239251	0	+	0.451613	(0.42,0.455]	chr1	27969	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ALG6	ENSG00000088035.18	ENST00000647818.1:ENST00000603108.6:ENST00000648964.1:ENST00000263440.6:ENST00000650494.1:ENST00000649570.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.3259	3.2836149999999997	4.24133	0.0484606	0.00326918	0.175495	0.0282494
chr12	16400643	16400741	13227971	0	-	0.44898	(0.42,0.455]	chr12	1037238	15	EXON_PSEUDO	EXON_PSEUDO	SUPT16HP1	ENSG00000256238.1	ENST00000537175.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.3259	3.2836149999999997	4.24133	0.0484606	0.00326918	0.175495	0.0282494
chr2	73239768	73239796	1885360	0	+	0.428571	(0.42,0.455]	chr2	178528	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCT7	ENSG00000135624.16	ENST00000471927.5:ENST00000469844.5:ENST00000473197.5:ENST00000492253.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5:ENST00000464397.1:ENST00000258091.10:ENST00000398422.2:ENST00000399032.2:ENST00000409924.7:ENST00000480489.5:ENST00000473786.5:ENST00000482064.1:ENST00000626868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.3259	3.2836149999999997	4.24133	0.0484606	0.00326918	0.175495	0.0282494
chr7	97869074	97869156	8940788	0	-	0.47561	(0.455,0.49]	chr7	682280	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000495255.1:ENST00000437657.5:ENST00000448127.1:ENST00000453600.5:ENST00000451771.5:ENST00000414884.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	5	52	2	3.00871	3.2835	3.55829	2.11527e-4	4.15156e-5	0.00328766	9.7509e-4
chr3	38490466	38490565	3421817	0	+	0.424242	(0.42,0.455]	chr3	297512	73	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.04003	3.28331	3.52659	7.68268e-4	6.87022e-4	0.00916171	0.00876781
chr19	40757331	40757408	17330864	0	+	0.506494	(0.49,0.53]	chr19	1436134	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1:ENST00000598452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	3.23548	3.283235	3.33099	2.76544e-4	1.59567e-4	0.00444204	0.00263091
chr12	93441256	93441354	13473131	0	-	0.785714	(0.59,1]	chr12	1059405	1	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.36593	3.283145	4.20036	0.0141097	4.07557e-5	0.077233	8.75066e-4
chr1	169477670	169477757	1358223	0	-	0.425287	(0.42,0.455]	chr1	138672	7	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50649	3.283015	4.05954	0.0302857	0.00617886	0.130016	0.0439741
chr4	17803950	17804041	5337600	0	-	0.450549	(0.42,0.455]	chr4	429242	5	CDS	CDS:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50649	3.283015	4.05954	0.0302857	0.00617886	0.130016	0.0439741
chr6	42617408	42617507	7151715	0	+	0.454545	(0.42,0.455]	chr6	551881	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50649	3.283015	4.05954	0.0302857	0.00617886	0.130016	0.0439741
chr9	99152795	99152895	10383939	0	+	0.44	(0.42,0.455]	chr9	782310	36	UTR3	UTR3:EXON_MRNA	TGFBR1	ENSG00000106799.13	ENST00000374990.6:ENST00000374994.9:ENST00000552516.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50649	3.283015	4.05954	0.0302857	0.00617886	0.130016	0.0439741
chrX	81000942	81001041	19133178	0	-	0.434343	(0.42,0.455]	chrX	1627365	9	EXON_LNCRNA	EXON_LNCRNA	RP11-196G4.2	ENSG00000284618.1	ENST00000641352.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.50649	3.283015	4.05954	0.0302857	0.00617886	0.130016	0.0439741
chr2	10127153	10127220	1629021	0	+	0.447761	(0.42,0.455]	chr2	161727	2	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000487591.5:ENST00000462343.1:ENST00000485717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.47621	3.283005	4.0898	0.00698074	0.00161397	0.0473262	0.0169243
chr10	119638544	119638634	11284361	0	+	0.6	(0.59,1]	chr10	859708	2	EXON_PSEUDO	EXON_PSEUDO	RPS8P4	ENSG00000227437.1	ENST00000454541.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	33	2	2.11894	3.282825	4.44671	0.0293157	0.00931497	0.128478	0.0586162
chr19	6495263	6495360	17442929	0	-	0.628866	(0.59,1]	chr19	1457081	1	CDS	CDS:EXON_MRNA	TUBB4A	ENSG00000104833.12	ENST00000264071.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.42639	3.28245	4.13851	0.0409084	5.66622e-5	0.163285	0.00114182
chr8	127740502	127740591	9612675	0	+	0.595506	(0.59,1]	chr8	728498	2	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	8	168	2	3.06873	3.282145	3.49556	9.80381e-5	6.72781e-6	0.00193696	1.99034e-4
chr12	54231875	54231974	13342845	0	-	0.555556	(0.53,0.59]	chr12	1049602	5	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	9	109	2	3.02437	3.28213	3.53989	2.39458e-5	1.62202e-6	6.20704e-4	5.99845e-5
chr12	48074417	48074512	13319379	0	-	0.431579	(0.42,0.455]	chr12	1044654	2	CDS	CDS:UTR3:EXON_MRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.19078	3.282035	3.37329	0.00310864	0.00136107	0.0274272	0.0141115
chr6	33250365	33250460	7668730	0	-	0.421053	(0.42,0.455]	chr6	587357	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	3.19078	3.282035	3.37329	0.00310864	0.00136107	0.0274272	0.0141115
chr1	163333076	163333175	511363	0	+	0.313131	(0.29,0.33]	chr1	55175	38	INTRON	INTRON	NUF2	ENSG00000143228.13	ENST00000534289.5:ENST00000450453.6:ENST00000524800.5:ENST00000367900.7:ENST00000442820.5:ENST00000271452.8:ENST00000490881.5:ENST00000497990.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	2.80161	3.2815250000000002	3.76144	0.00415667	1.09291e-5	0.0325842	2.96269e-4
chr5	76732610	76732709	6044916	0	+	0.515152	(0.49,0.53]	chr5	474229	4	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.87268	3.2815250000000002	3.69037	0.0226513	0.00175078	0.10505	0.0180053
chr16	58163661	58163759	15965662	0	-	0.428571	(0.42,0.455]	chr16	1280935	43	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.36247	3.28148	4.20049	0.0462889	1.49765e-5	0.176878	3.83096e-4
chr2	69356495	69356557	2718637	0	-	0.451613	(0.42,0.455]	chr2	242067	1	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.36247	3.28148	4.20049	0.0462889	1.49765e-5	0.176878	3.83096e-4
chr10	22330318	22330415	10962220	0	+	0.371134	(0.36,0.39]	chr10	834314	9	UTR3	UTR3:EXON_MRNA	BMI1	ENSG00000168283.14	ENST00000376663.8	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.97546	3.281465	4.58747	0.0239316	6.55819e-4	0.109927	0.00860229
chr20	50081799	50081896	18004125	0	-	0.463918	(0.455,0.49]	chr20	1525944	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	80	2	2.84366	3.2813299999999996	3.719	2.00869e-5	1.42274e-5	4.89041e-4	4.02509e-4
chr5	25188972	25189070	6504017	0	-	0.295918	(0.29,0.33]	chr5	504194	3	INTRON	INTRON	LINC02228	ENSG00000251273.4	ENST00000641970.1:ENST00000641261.2:ENST00000507600.2:ENST00000670589.1:ENST00000662466.1	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	3.08261	3.28131	3.48001	0.0048227	0.00126219	0.0365653	0.013837
chr11	2909275	2909356	11769268	0	+	0.753086	(0.59,1]	chr11	900369	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC22A18	ENSG00000110628.16	ENST00000347936.6:ENST00000649076.2:ENST00000449793.6:ENST00000380574.5:ENST00000485423.1:ENST00000492567.2:ENST00000498244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	35	2	2.44587	3.281295	4.11672	0.0222273	0.0105307	0.105595	0.0644466
chr6	26183985	26184076	7101550	0	+	0.593407	(0.59,1]	chr6	542840	2	CDS	CDS:EXON_MRNA	H2BC6	ENSG00000274290.3	ENST00000634910.1:ENST00000614097.3	protein_coding	protein_coding	protein_coding	protein_coding	11	226	2	3.00858	3.281205	3.55383	3.06612e-5	2.31458e-6	6.87344e-4	8.9083e-5
chr3	13336786	13336852	4046402	0	-	0.681818	(0.59,1]	chr3	339582	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000485755.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	2.16424	3.281155	4.39807	0.0123032	1.36238e-5	0.0705839	3.54656e-4
chr6	18224348	18224446	7622460	0	-	0.265306	[0,0.29]	chr6	580929	6	UTR3	UTR3:EXON_MRNA	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	88	2	3.01319	3.281145	3.5491	3.57149e-6	1.09296e-6	1.28707e-4	4.32035e-5
chr1	111456629	111456692	407309	0	+	0.460317	(0.455,0.49]	chr1	40179	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	87	2	2.44685	3.28113	4.11541	1.29316e-4	7.49578e-7	0.00223746	3.48685e-5
chr11	9434933	9435031	11792778	0	+	0.357143	(0.33,0.36]	chr11	902906	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	3.03552	3.2809299999999997	3.52634	0.0012034	7.28639e-6	0.0134762	2.13219e-4
chr3	49360208	49360308	4174073	0	-	0.46	(0.455,0.49]	chr3	350895	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	7	77	2	2.53963	3.280785	4.02194	0.00112063	1.45509e-7	0.0128408	7.74453e-6
chr1	42181970	42182024	964229	0	-	0.444444	(0.42,0.455]	chr1	101511	2	CDS	CDS:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.03532	3.2806300000000004	4.52594	0.040947	0.00144145	0.163285	0.0147046
chr1	211946606	211946705	1479904	0	-	0.434343	(0.42,0.455]	chr1	149337	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1:ENST00000475798.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.03532	3.2806300000000004	4.52594	0.040947	0.00144145	0.163285	0.0147046
chr5	146126489	146126545	6891172	0	-	0.428571	(0.42,0.455]	chr5	527472	2	CDS	CDS:UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000508709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.03532	3.2806300000000004	4.52594	0.040947	0.00144145	0.163285	0.0147046
chr22	39520556	39520651	18370783	0	+	0.610526	(0.59,1]	chr22	1563259	5	UTR5	UTR5:EXON_MRNA	ATF4	ENSG00000128272.17	ENST00000404241.6:ENST00000674920.3:ENST00000679776.1:ENST00000337304.2:ENST00000675582.2:ENST00000396680.3:ENST00000676346.2:ENST00000680446.1:ENST00000674568.2:ENST00000680748.1:ENST00000674835.2	protein_coding	protein_coding	protein_coding	protein_coding	8	163	2	1.87317	3.28057	4.68797	0.00983401	6.50468e-8	0.0615818	3.86407e-6
chr7	4997777	4997874	8110140	0	+	0.505155	(0.49,0.53]	chr7	619780	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	RNF216P1:RBAK-RBAKDN	ENSG00000196204.12:ENSG00000272968.5	ENST00000404006.5:ENST00000494947.5:ENST00000407184.5:ENST00000471244.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	28	2	3.04107	3.28044	3.51981	0.00533879	6.88328e-4	0.0392268	0.00876781
chr1	110873147	110873197	405365	0	+	0.52	(0.49,0.53]	chr1	39795	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000471220.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	3.11892	3.2802100000000003	3.4415	0.00398244	9.98297e-4	0.0322851	0.0111246
chr8	42398743	42398803	9305587	0	+	0.4	(0.39,0.42]	chr8	712487	1	CDS	CDS:UTR3:EXON_MRNA	VDAC3	ENSG00000078668.14	ENST00000518563.5:ENST00000520115.5:ENST00000522069.5:ENST00000522572.5:ENST00000022615.9:ENST00000521348.5:ENST00000518495.5:ENST00000521158.5:ENST00000522010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	3.23174	3.279925	3.32811	0.00182819	2.82122e-4	0.0183913	0.00415762
chr1	25272547	25272647	103463	0	+	0.55	(0.53,0.59]	chr1	12125	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	3.02054	3.2799199999999997	3.5393	0.00577011	6.46017e-4	0.0426551	0.00799743
chr1	42843132	42843232	162252	0	+	0.55	(0.53,0.59]	chr1	20421	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	3.02054	3.2799199999999997	3.5393	0.00577011	6.46017e-4	0.0426551	0.00799743
chr22	41515841	41515916	18380939	0	+	0.56	(0.53,0.59]	chr22	1564574	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000478010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	32	2	3.02054	3.2799199999999997	3.5393	0.00577011	6.46017e-4	0.0426551	0.00799743
chr9	137113205	137113287	10893168	0	-	0.573171	(0.53,0.59]	chr9	828371	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DPP7	ENSG00000176978.14	ENST00000371579.7:ENST00000473532.5:ENST00000472306.5:ENST00000485456.5:ENST00000460830.1:ENST00000482088.5:ENST00000478597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	3.02054	3.2799199999999997	3.5393	0.00577011	6.46017e-4	0.0426551	0.00799743
chr1	158525444	158525542	492368	0	+	0.418367	(0.39,0.42]	chr1	52527	19	EXON_PSEUDO	EXON_PSEUDO	HSP90AA3P	ENSG00000231434.1	ENST00000436135.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	37	2	2.54172	3.279815	4.01791	0.00247353	4.78174e-5	0.0223024	0.00109049
chr3	177021725	177021824	4593444	0	-	0.414141	(0.39,0.42]	chr3	379622	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	2.88836	3.279595	3.67083	0.0102432	1.93844e-5	0.062872	4.72961e-4
chr17	49711421	49711488	16583014	0	-	0.61194	(0.59,1]	chr17	1362591	2	CDS	CDS:UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503573.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.32384	3.2795699999999997	4.2353	0.0165254	0.0157639	0.0873033	0.0851539
chr5	134648881	134648978	6230063	0	+	0.680412	(0.59,1]	chr5	485151	2	UTR5	UTR5:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.32384	3.2795699999999997	4.2353	0.0165254	0.0157639	0.0873033	0.0851539
chr8	4788198	4788294	9177806	0	+	0.4375	(0.42,0.455]	chr8	700904	10	EXON_PSEUDO	EXON_PSEUDO	PAICSP4	ENSG00000254244.1	ENST00000517543.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	27	2	1.87908	3.279445	4.67981	0.0189336	5.38444e-4	0.0958835	0.00744072
chr1	12207320	12207420	47302	0	+	0.54	(0.53,0.59]	chr1	6130	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	388	2	3.01878	3.279285	3.53979	1.52423e-7	1.66375e-9	8.05114e-6	1.7808e-7
chr17	41690781	41690826	16226842	0	+	0.444444	(0.42,0.455]	chr17	1312503	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	47	2	2.16214	3.279275	4.39641	0.00696724	4.03242e-6	0.0474632	1.29746e-4
chr7	66945165	66945261	8307603	0	+	0.53125	(0.53,0.59]	chr7	633373	3	CDS	CDS:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6:ENST00000424964.6:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	2.73974	3.27927	3.8188	9.00802e-4	1.54941e-4	0.0102618	0.0028049
chr6	31667918	31667970	7116063	0	+	0.538462	(0.53,0.59]	chr6	545963	2	CDS	CDS:EXON_MRNA	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000465481.6:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	88	2	2.74071	3.27925	3.81779	7.83491e-5	7.68216e-6	0.00148897	2.4235e-4
chr18	3457753	3457840	16730874	0	+	0.482759	(0.455,0.49]	chr18	1380204	5	CDS	CDS:EXON_MRNA	TGIF1	ENSG00000177426.22	ENST00000401449.5:ENST00000548489.6:ENST00000618001.4:ENST00000549780.5:ENST00000405385.7:ENST00000407501.6:ENST00000343820.10:ENST00000551541.5:ENST00000345133.9:ENST00000330513.10:ENST00000549546.5:ENST00000400167.6:ENST00000472042.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.35644	3.279165	4.20189	0.00555877	0.00397662	0.0405952	0.0322851
chr18	23556495	23556579	17037527	0	-	0.559524	(0.53,0.59]	chr18	1400609	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.56002	3.2791050000000004	3.99819	0.0111308	0.00634904	0.0665375	0.0446708
chr15	89197106	89197205	15093459	0	+	0.525253	(0.49,0.53]	chr15	1187100	18	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.8671	3.278735	3.69037	0.0226513	0.0100489	0.10505	0.0623334
chr6	43012279	43012374	7706605	0	-	0.505263	(0.49,0.53]	chr6	591054	13	UTR3	UTR3:EXON_MRNA	MEA1	ENSG00000124733.5	ENST00000244711.4:ENST00000642555.1:ENST00000643776.1:ENST00000645410.1:ENST00000645375.1:ENST00000642748.1	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	2.22491	3.278575	4.33224	0.00273167	9.97008e-9	0.0246202	7.73834e-7
chr10	110279179	110279236	11250130	0	+	0.45614	(0.455,0.49]	chr10	857015	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000453116.5:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000651557.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000442296.5:ENST00000652323.1:ENST00000369612.1:ENST00000650752.1:ENST00000651112.1:ENST00000485566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.35515	3.27852	4.20189	0.0140117	0.00397662	0.0767536	0.0322851
chr12	6514846	6514920	12713372	0	+	0.486486	(0.455,0.49]	chr12	986536	2	CDS	CDS:UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000545732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.35515	3.27852	4.20189	0.0140117	0.00397662	0.0767536	0.0322851
chr2	176201079	176201165	3029406	0	-	0.511628	(0.49,0.53]	chr2	268319	3	EXON_PSEUDO	EXON_PSEUDO	AC016739.2	ENSG00000218175.2	ENST00000405359.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	25	252	2	3.15571	3.2785	3.40129	2.12304e-7	7.87399e-9	1.19818e-5	6.30554e-7
chr6	160068248	160068316	7528571	0	+	0.558824	(0.53,0.59]	chr6	574864	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	3.1234	3.27841	3.43342	0.00390623	8.93729e-5	0.0322851	0.00165837
chr14	100277799	100277899	14487340	0	+	0.37	(0.36,0.39]	chr14	1131912	3	UTR3	UTR3:EXON_MRNA:PRIMIRNA	YY1:MIR6764	ENSG00000100811.14:ENSG00000283840.1	ENST00000262238.10:ENST00000554804.1:ENST00000623799.1:ENST00000636393.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	5	41	2	2.75447	3.27836	3.80225	3.28568e-4	1.85308e-4	0.00467693	0.00322093
chr14	51254419	51254519	14278853	0	+	0.42	(0.39,0.42]	chr14	1116424	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	1.99911	3.27817	4.55723	0.0477207	0.00117753	0.17993	0.0127276
chr14	81413149	81413239	14439180	0	+	0.411111	(0.39,0.42]	chr14	1127403	3	EXON_PSEUDO	EXON_PSEUDO	DYNLL1P2	ENSG00000258605.1	ENST00000554807.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	18	2	1.99911	3.27817	4.55723	0.0477207	0.00117753	0.17993	0.0127276
chr2	8852788	8852888	2505673	0	-	0.42	(0.39,0.42]	chr2	226072	2	UTR3	UTR3:EXON_MRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.99911	3.27817	4.55723	0.0477207	0.00117753	0.17993	0.0127276
chr13	52475240	52475339	13747248	0	+	0.414141	(0.39,0.42]	chr13	1082861	2	UTR3	UTR3:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.99507	3.27802	3.56097	0.00637824	6.12149e-4	0.0449937	0.00818575
chr6	27831371	27831427	7649616	0	-	0.714286	(0.59,1]	chr6	582811	2	CDS	CDS:EXON_MRNA	H4C12	ENSG00000273542.2	ENST00000611927.2	protein_coding	protein_coding	protein_coding	protein_coding	11	238	2	2.68174	3.2779949999999998	3.87425	2.04667e-4	2.67954e-7	0.0032118	1.45865e-5
chr4	10074621	10074715	5311584	0	-	0.510638	(0.49,0.53]	chr4	427623	4	UTR3	UTR3:EXON_MRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	2.87508	3.2779800000000003	3.68088	4.55699e-4	1.82756e-5	0.00645757	4.52458e-4
chr3	31629297	31629354	3392426	0	+	0.473684	(0.455,0.49]	chr3	295087	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1:ENST00000488151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	2.0008	3.27778	4.55476	0.0129467	1.27404e-6	0.0724783	4.90986e-5
chr12	113369115	113369209	13101533	0	+	0.617021	(0.59,1]	chr12	1022388	1	CDS	CDS:EXON_MRNA:INTRON	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.69477	3.277685	3.8606	0.020208	2.2997e-4	0.0978331	0.00352524
chr5	917842	917935	5851396	0	+	0.27957	[0,0.29]	chr5	460060	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIP13	ENSG00000071539.14	ENST00000166345.8:ENST00000510412.5:ENST00000508430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.51725	3.277615	4.03798	0.00319723	7.64187e-5	0.0267978	0.00160163
chr1	28200956	28201053	912951	0	-	0.515464	(0.49,0.53]	chr1	95445	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	76	2	3.23781	3.2775499999999997	3.31729	5.17993e-5	7.87963e-6	0.00115752	2.25573e-4
chr12	21637070	21637132	13236620	0	-	0.354839	(0.33,0.36]	chr12	1037949	1	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.79966	3.2775299999999996	3.7554	5.31274e-5	1.62733e-5	0.00108035	4.52905e-4
chr19	12800176	12800237	17470980	0	-	0.52459	(0.49,0.53]	chr19	1463180	1	CDS	CDS:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000498785.1:ENST00000478908.1:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	49	2	2.32512	3.2774900000000002	4.22986	0.00306772	1.25249e-5	0.0272156	3.30689e-4
chr17	7311017	7311069	16103926	0	+	0.365385	(0.36,0.39]	chr17	1296300	1	CDS	CDS:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	3.02397	3.277455	3.53094	0.0305588	0.00674398	0.130016	0.0461258
chr17	1653612	1653683	16401297	0	-	0.492958	(0.49,0.53]	chr17	1334840	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000575116.1:ENST00000576585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	2.78773	3.27738	3.76703	0.00257389	1.02216e-5	0.0235767	2.82175e-4
chr1	54228254	54228305	1028138	0	-	0.529412	(0.49,0.53]	chr1	106766	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6:ENST00000371320.8:ENST00000426150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.6129	3.277335	3.94177	0.0104929	0.0052746	0.063428	0.0389109
chr3	33866350	33866425	3399901	0	+	0.453333	(0.42,0.455]	chr3	295767	1	CDS	CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000473593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	2.33282	3.2772449999999997	4.22167	0.00677333	3.43957e-7	0.0462932	1.60837e-5
chr8	47935815	47935900	9817183	0	-	0.494118	(0.49,0.53]	chr8	742873	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	1.9676	3.277175	4.58675	0.00876974	1.05095e-6	0.056115	4.17035e-5
chr10	119168004	119168099	11717942	0	-	0.284211	[0,0.29]	chr10	893951	4	UTR3	UTR3:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	41	2	2.96533	3.2770799999999998	3.58883	0.0024246	4.87031e-6	0.0227938	1.51951e-4
chr18	35102016	35102087	16822329	0	+	0.450704	(0.42,0.455]	chr18	1387324	2	CDS	CDS:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000436190.6:ENST00000588349.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.15137	3.277065	4.40276	0.0123864	0.0017618	0.07101	0.0180053
chr1	10400383	10400483	39709	0	+	0.48	(0.455,0.49]	chr1	4779	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000477958.5:ENST00000483936.5:ENST00000465632.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chr12	53513348	53513448	13339482	0	-	0.48	(0.455,0.49]	chr12	1049176	14	UTR3	UTR3:EXON_MRNA:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chr17	44883648	44883724	16560265	0	-	0.473684	(0.455,0.49]	chr17	1359803	1	CDS	CDS:UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000588374.1:ENST00000593072.5:ENST00000589825.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chr17	67160986	67161076	16651562	0	-	0.477778	(0.455,0.49]	chr17	1369431	2	CDS	CDS:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chr2	74107076	74107176	1891237	0	+	0.49	(0.455,0.49]	chr2	179120	50	UTR3	UTR3:EXON_MRNA	TET3	ENSG00000187605.16	ENST00000409262.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chr7	84983745	84983840	8362707	0	+	0.473684	(0.455,0.49]	chr7	637705	3	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P8	ENSG00000229251.3	ENST00000436090.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chrX	63428342	63428441	19089373	0	-	0.464646	(0.455,0.49]	chrX	1624082	19	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	LINC01278	ENSG00000235437.8	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000654880.1:ENST00000664356.1:ENST00000666437.1:ENST00000670203.1:ENST00000656953.1:ENST00000669201.1:ENST00000666216.1:ENST00000659222.1:ENST00000662689.1:ENST00000662779.1:ENST00000608788.6:ENST00000669422.1:ENST00000665831.1:ENST00000609401.6:ENST00000609143.6:ENST00000608623.1:ENST00000671033.1:ENST00000656972.1:ENST00000662156.1:ENST00000670242.1:ENST00000665925.1:ENST00000654240.1:ENST00000671338.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	15	2	2.35214	3.2770149999999996	4.20189	0.0455621	0.00397662	0.168044	0.0322851
chr1	111124741	111124811	1224016	0	-	0.4	(0.39,0.42]	chr1	119667	1	CDS	CDS:EXON_MRNA:INTRON	DRAM2	ENSG00000156171.15	ENST00000484310.6:ENST00000539140.6:ENST00000286692.8:ENST00000461449.5:ENST00000496430.6:ENST00000480600.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	2.61392	3.2769399999999997	3.93996	0.00841622	0.0017565	0.054565	0.0171455
chr14	75134396	75134493	14709070	0	-	0.371134	(0.36,0.39]	chr14	1152525	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	47	2	2.75147	3.27686	3.80225	1.85308e-4	1.45783e-4	0.00322093	0.00244642
chr2	97756907	97757002	2795053	0	-	0.473684	(0.455,0.49]	chr2	249773	7	UTR3	UTR3:EXON_MRNA	TMEM131	ENSG00000075568.17	ENST00000485245.2:ENST00000186436.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	3.08961	3.27675	3.46389	0.00445157	9.14164e-4	0.0340751	0.0110519
chr10	33057713	33057812	11444981	0	-	0.474747	(0.455,0.49]	chr10	872770	2	EXON_PSEUDO	EXON_PSEUDO	RPL7AP53	ENSG00000235962.5	ENST00000468834.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.53286	3.27663	4.0204	0.0282409	0.00736097	0.124386	0.0490627
chr12	45850724	45850822	12851684	0	+	0.459184	(0.455,0.49]	chr12	998018	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.53286	3.27663	4.0204	0.0282409	0.00736097	0.124386	0.0490627
chr14	75651554	75651634	14709933	0	-	0.4875	(0.455,0.49]	chr14	1152590	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ERG28	ENSG00000133935.7	ENST00000256319.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.53286	3.27663	4.0204	0.0282409	0.00736097	0.124386	0.0490627
chr17	37243464	37243559	16524944	0	-	0.484211	(0.455,0.49]	chr17	1352250	2	CDS	CDS:EXON_MRNA	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.53286	3.27663	4.0204	0.0282409	0.00736097	0.124386	0.0490627
chr3	47586836	47586934	4161749	0	-	0.459184	(0.455,0.49]	chr3	348302	17	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.53286	3.27663	4.0204	0.0282409	0.00736097	0.124386	0.0490627
chr7	75196667	75196731	8858032	0	-	0.484375	(0.455,0.49]	chr7	676766	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4:ENST00000614592.4:ENST00000615592.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	15	2	2.53286	3.27663	4.0204	0.0282409	0.00736097	0.124386	0.0490627
chr17	75846633	75846733	16685227	0	-	0.7	(0.59,1]	chr17	1373620	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5:ENST00000588373.5:ENST00000433525.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.77109	3.276485	3.78188	0.00331425	3.33896e-4	0.0285314	0.00472923
chr4	73091338	73091434	5466124	0	-	0.46875	(0.455,0.49]	chr4	437754	8	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.24913	3.276485	3.30384	0.00239443	0.00184955	0.0225356	0.0178046
chr4	141229584	141229641	5131866	0	+	0.473684	(0.455,0.49]	chr4	415520	1	CDS	CDS:UTR3:EXON_MRNA	ZNF330	ENSG00000109445.11	ENST00000262990.9:ENST00000507532.5:ENST00000512809.5:ENST00000512738.5:ENST00000503649.5:ENST00000506302.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.24913	3.276485	3.30384	0.00239443	0.00184955	0.0225356	0.0178046
chr14	69380291	69380373	14687498	0	-	0.292683	(0.29,0.33]	chr14	1150256	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	3.08169	3.2764699999999998	3.47125	0.00114594	7.49757e-5	0.0130468	0.00142868
chr1	32775887	32775980	923473	0	-	0.548387	(0.53,0.59]	chr1	97310	8	UTR3	UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	122	2	2.63175	3.2763799999999996	3.92101	1.56735e-4	7.43199e-8	0.00283272	4.33231e-6
chr5	7900251	7900348	5871369	0	+	0.556701	(0.53,0.59]	chr5	461598	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5:ENST00000506115.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.54844	3.276185	4.00393	0.0108084	0.00663226	0.064368	0.0461575
chr5	139623367	139623461	6250532	0	+	0.414894	(0.39,0.42]	chr5	487105	1	CDS	CDS:EXON_MRNA	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	72	2	2.91508	3.27598	3.63688	4.41174e-4	6.44758e-7	0.0062930699999999996	2.75634e-5
chr20	32438230	32438329	17754391	0	+	0.333333	(0.33,0.36]	chr20	1498713	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ASXL1	ENSG00000171456.20	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646985.1:ENST00000306058.9:ENST00000647223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.97606	3.275825	3.57559	0.0262108	0.00871774	0.117079	0.0558165
chr9	105636891	105636988	10399960	0	+	0.340206	(0.33,0.36]	chr9	783624	2	UTR3	UTR3:EXON_MRNA:INTRON	FKTN	ENSG00000106692.15	ENST00000223528.6:ENST00000675695.1:ENST00000357998.10:ENST00000448551.6:ENST00000675736.1:ENST00000674563.1:ENST00000602526.1:ENST00000674633.1:ENST00000642537.1:ENST00000645933.1:ENST00000642177.1:ENST00000676310.1:ENST00000642952.1:ENST00000676011.1:ENST00000457847.1:ENST00000644273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.97606	3.275825	3.57559	0.0262108	0.00871774	0.117079	0.0558165
chr7	130181622	130181719	9063301	0	-	0.443299	(0.42,0.455]	chr7	692167	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5:ENST00000467599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	81	2	3.00245	3.275715	3.54898	7.49627e-5	1.34101e-6	0.00157538	5.13503e-5
chr14	21360908	21360972	14521232	0	-	0.40625	(0.39,0.42]	chr14	1137347	2	CDS	CDS:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.27012	3.2756999999999996	4.28128	0.00945558	0.00342611	0.0594007	0.0283456
chr5	163491455	163491552	6343788	0	+	0.412371	(0.39,0.42]	chr5	494110	4	UTR3	UTR3:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000353866.7:ENST00000393915.9:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.61392	3.275645	3.93737	0.0017565	7.80292e-5	0.0171455	0.00162998
chrX	300806	300904	18549170	0	+	0.530612	(0.53,0.59]	chrX	1585413	16	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.51602	3.275275	4.03453	0.00264912	4.6e-5	0.024013	9.56296e-4
chr1	65388335	65388415	251200	0	+	0.4125	(0.39,0.42]	chr1	28689	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000498720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	3.19588	3.27527	3.35466	0.00321212	1.40185e-4	0.0280721	0.00236775
chr16	68191408	68191500	15714919	0	+	0.532609	(0.53,0.59]	chr16	1251034	8	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	127	2	3.02254	3.275155	3.52777	5.83672e-6	1.76168e-6	1.76138e-4	7.12838e-5
chr18	662145	662232	16716934	0	+	0.494253	(0.49,0.53]	chr18	1379281	1	CDS	CDS:EXON_MRNA:INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	61	2	2.58241	3.27499	3.96757	2.10975e-4	6.21316e-5	0.00328171	0.00134149
chr11	63910227	63910326	11977763	0	+	0.515152	(0.49,0.53]	chr11	918530	11	UTR3	UTR3:EXON_MRNA	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000402010.8:ENST00000677688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.8671	3.27478	3.68246	0.0100489	3.06313e-4	0.0623334	0.00442973
chr1	42759295	42759390	966567	0	-	0.557895	(0.53,0.59]	chr1	101773	2	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000463465.1:ENST00000372526.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.515	3.2747650000000004	4.03453	0.0292633	4.6e-5	0.129773	9.56296e-4
chr1	226368259	226368321	1533091	0	-	0.548387	(0.53,0.59]	chr1	153439	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.515	3.2747650000000004	4.03453	0.0292633	4.6e-5	0.129773	9.56296e-4
chr17	41524378	41524459	16542259	0	-	0.567901	(0.53,0.59]	chr17	1355975	1	CDS	CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000468880.1:ENST00000593096.1:ENST00000471565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.515	3.2747650000000004	4.03453	0.0292633	4.6e-5	0.129773	9.56296e-4
chr7	75982223	75982278	8342147	0	+	0.563636	(0.53,0.59]	chr7	636177	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1:ENST00000439269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	36	2	2.515	3.2747650000000004	4.03453	0.0292633	4.6e-5	0.129773	9.56296e-4
chr2	96278903	96278998	2790299	0	-	0.431579	(0.42,0.455]	chr2	248713	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000484372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	3.23839	3.2744299999999997	3.31047	2.92986e-4	8.24127e-6	0.00464297	2.34981e-4
chr11	319959	320030	12225822	0	-	0.619718	(0.59,1]	chr11	943139	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000680920.1:ENST00000679793.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	89	2	3.20238	3.27425	3.34612	4.79306e-4	2.60979e-4	0.00629006	0.0042461
chr17	8206749	8206841	16432139	0	-	0.565217	(0.53,0.59]	chr17	1340343	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5:ENST00000578549.5:ENST00000580998.5:ENST00000577833.5:ENST00000581511.5:ENST00000580390.5:ENST00000584561.1:ENST00000582368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.92962	3.27409	3.61856	0.0303021	0.0012954	0.129773	0.0136936
chr14	100278098	100278198	14487343	0	+	0.25	[0,0.29]	chr14	1131912	6	UTR3	UTR3:EXON_MRNA	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000554804.1:ENST00000623799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	1.94841	3.274	4.59959	0.0427374	7.13769e-4	0.168094	0.0085671400000000009
chr5	10436838	10436937	5875566	0	+	0.282828	[0,0.29]	chr5	462061	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	1.94841	3.274	4.59959	0.0427374	7.13769e-4	0.168094	0.0085671400000000009
chr11	498762	498847	12226416	0	-	0.670588	(0.59,1]	chr11	943352	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5:ENST00000529115.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.93771	3.2739700000000003	3.61023	0.00168288	7.25496e-4	0.0175167	0.00869086
chr11	130144226	130144324	12207138	0	+	0.510204	(0.49,0.53]	chr11	942093	9	UTR3	UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000338167.10:ENST00000263574.9:ENST00000278756.7:ENST00000525604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	108	2	3.08904	3.273755	3.45847	3.90616e-5	3.21719e-7	9.35119e-4	1.51945e-5
chr2	3576486	3576558	1616644	0	+	0.416667	(0.39,0.42]	chr2	160398	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000479123.1:ENST00000645540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	115	2	2.89449	3.273595	3.6527	3.08258e-6	5.9382e-7	1.0335e-4	2.84227e-5
chr14	20801968	20802068	14518863	0	-	0.61	(0.59,1]	chr14	1136984	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.67735	3.27356	4.86977	0.0534288	0.00246014	0.184995	0.0230058
chr1	211952568	211952634	1479965	0	-	0.363636	(0.36,0.39]	chr1	149343	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1:ENST00000475798.5:ENST00000461212.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.38564	3.273535	4.16143	0.0476159	0.00486719	0.17993	0.0366328
chr10	21609630	21609730	10960569	0	+	0.37	(0.36,0.39]	chr10	834072	138	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000652258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.38564	3.273535	4.16143	0.0476159	0.00486719	0.17993	0.0366328
chr11	4384993	4385090	12239272	0	-	0.381443	(0.36,0.39]	chr11	945755	2	UTR3	UTR3:EXON_MRNA	TRIM21	ENSG00000132109.10	ENST00000254436.8:ENST00000533692.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.38564	3.273535	4.16143	0.0476159	0.00486719	0.17993	0.0366328
chr17	28326892	28326992	16175264	0	+	0.39	(0.36,0.39]	chr17	1304982	2	UTR3	UTR3:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.38564	3.273535	4.16143	0.0476159	0.00486719	0.17993	0.0366328
chr5	78459244	78459303	6051244	0	+	0.38983	(0.36,0.39]	chr5	474729	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8:ENST00000506858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.38564	3.273535	4.16143	0.0476159	0.00486719	0.17993	0.0366328
chr5	131393390	131393490	6221764	0	+	0.39	(0.36,0.39]	chr5	484085	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.38564	3.273535	4.16143	0.0476159	0.00486719	0.17993	0.0366328
chr16	68122269	68122364	15714215	0	+	0.452632	(0.42,0.455]	chr16	1250981	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-67A1.2:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	5	51	2	3.03147	3.273425	3.51538	2.02875e-4	5.28826e-5	0.0034429	0.00107799
chr17	17816630	17816718	16465720	0	-	0.727273	(0.59,1]	chr17	1344707	3	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000471445.5:ENST00000469356.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.76006	3.27341	3.78676	0.00330486	3.60514e-4	0.027613	0.00544284
chr7	143383148	143383235	8581584	0	+	0.586207	(0.53,0.59]	chr7	655830	5	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ZYX:MIR6892	ENSG00000159840.16:ENSG00000278449.1	ENST00000322764.10:ENST00000468083.1:ENST00000354434.8:ENST00000392910.6:ENST00000477373.1:ENST00000612346.1:ENST00000436448.1:ENST00000446634.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	3	27	2	1.88327	3.2733749999999997	4.66348	0.0298124	0.00107799	0.129773	0.0118238
chr22	43166720	43166819	18527850	0	-	0.585859	(0.53,0.59]	chr22	1582334	2	UTR3	UTR3:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	1.78041	3.27337	4.76633	0.0407112	6.98999e-4	0.163285	0.00846751
chr12	56617430	56617530	13351902	0	-	0.55	(0.53,0.59]	chr12	1051708	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1:ENST00000546695.5:ENST00000549506.5:ENST00000550730.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	85	2	3.19909	3.2732200000000002	3.34735	1.46925e-4	6.97283e-6	0.0026854	2.05586e-4
chr15	57990384	57990468	15305466	0	-	0.321429	(0.29,0.33]	chr15	1208116	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ALDH1A2:RP11-86K22.2	ENSG00000128918.15:ENSG00000274719.1	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000621880.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	4	33	2	2.17855	3.2729999999999997	4.36745	0.0183673	4.53307e-6	0.0928041	1.42727e-4
chr10	27111782	27111881	11423287	0	-	0.353535	(0.33,0.36]	chr10	870884	18	UTR3	UTR3:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	3.03552	3.272945	3.51037	0.0012034	5.65559e-5	0.0134762	0.00114087
chr17	29021403	29021482	16489631	0	-	0.443038	(0.42,0.455]	chr17	1348602	2	EXON_PSEUDO	EXON_PSEUDO	RP11-321A17.3	ENSG00000263781.3	ENST00000580924.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	36	2	3.19078	3.2728450000000002	3.35491	0.00310864	1.39104e-4	0.0274272	0.00235518
chr17	42501250	42501304	16228605	0	+	0.444444	(0.42,0.455]	chr17	1312964	2	CDS	CDS:EXON_MRNA	ATP6V0A1	ENSG00000033627.17	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	3.19078	3.2728450000000002	3.35491	0.00310864	1.39104e-4	0.0274272	0.00235518
chr1	27851392	27851486	114795	0	+	0.340426	(0.33,0.36]	chr1	13956	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000486634.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.97606	3.272775	3.56949	0.00871774	5.48184e-4	0.0558165	0.00697082
chr16	23573089	23573189	15594629	0	+	0.37	(0.36,0.39]	chr16	1236627	26	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	14	113	2	3.18613	3.272715	3.3593	1.62609e-6	3.04428e-7	6.62726e-5	1.45174e-5
chrX	16845034	16845103	18971682	0	-	0.405797	(0.39,0.42]	chrX	1615429	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	35	2	1.77432	3.27269	4.77106	0.0100237	3.03764e-4	0.0622514	0.00472028
chr11	88335061	88335082	12533492	0	-	0.333333	(0.33,0.36]	chr11	972576	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000676529.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	2.51887	3.27245	4.02603	0.0358636	0.0071776	0.147298	0.048188
chr2	156585506	156585606	2150214	0	+	0.35	(0.33,0.36]	chr2	198496	27	UTR3	UTR3:EXON_MRNA:INTRON	GPD2	ENSG00000115159.16	ENST00000310454.10:ENST00000438166.7:ENST00000409861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.51887	3.27245	4.02603	0.0358636	0.0071776	0.147298	0.048188
chr3	196585404	196585503	3988257	0	+	0.343434	(0.33,0.36]	chr3	336035	12	UTR3	UTR3:EXON_MRNA	FBXO45	ENSG00000174013.8	ENST00000440469.1:ENST00000311630.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.51887	3.27245	4.02603	0.0358636	0.0071776	0.147298	0.048188
chr4	128270127	128270226	5639346	0	-	0.353535	(0.33,0.36]	chr4	449280	10	UTR3	UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.51887	3.27245	4.02603	0.0358636	0.0071776	0.147298	0.048188
chrX	130204679	130204778	19221886	0	-	0.333333	(0.33,0.36]	chrX	1633428	21	UTR3	UTR3:EXON_MRNA	ZNF280C	ENSG00000056277.16	ENST00000370978.9	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.51887	3.27245	4.02603	0.0358636	0.0071776	0.147298	0.048188
chr11	117169962	117170060	12154365	0	+	0.336735	(0.33,0.36]	chr11	936189	24	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.97606	3.27212	3.56818	0.00871774	3.90735e-5	0.0558165	8.43777e-4
chr6	166934090	166934136	8083275	0	-	0.347826	(0.33,0.36]	chr6	616952	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-514O12.4:RNASET2	ENSG00000249141.1:ENSG00000026297.17	ENST00000507747.1:ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6:ENST00000499370.6:ENST00000358165.7:ENST00000496851.6:ENST00000509073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.97606	3.27212	3.56818	0.00871774	3.90735e-5	0.0558165	8.43777e-4
chr2	27051226	27051322	1690778	0	+	0.541667	(0.53,0.59]	chr2	165378	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGBL5	ENSG00000084693.16	ENST00000421915.5:ENST00000453161.5	protein_coding	protein_coding	protein_coding	protein_coding	490	5105	2	2.40495	3.2721099999999996	4.13927	7.275e-7	1e-12	3.04215e-5	2.46312e-10
chr6	129578115	129578214	7955641	0	-	0.333333	(0.33,0.36]	chr6	608194	21	UTR3	UTR3:EXON_MRNA	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.97592	3.27205	3.56818	4.1482e-4	3.90735e-5	0.00607555	8.43777e-4
chr13	79320327	79320425	14089905	0	-	0.295918	(0.29,0.33]	chr13	1103311	16	UTR3	UTR3:EXON_MRNA:INTRON	RBM26	ENSG00000139746.16	ENST00000449987.6:ENST00000438737.3:ENST00000438724.5:ENST00000622611.4:ENST00000267229.11	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.92065	3.271885	3.62312	0.0222826	0.0117842	0.104593	0.0686664
chr3	32533041	32533097	4110454	0	-	0.303571	(0.29,0.33]	chr3	343365	2	CDS	CDS:EXON_MRNA	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000472985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.92065	3.271885	3.62312	0.0222826	0.0117842	0.104593	0.0686664
chr9	37184013	37184113	10253482	0	+	0.33	(0.29,0.33]	chr9	771606	239	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.92065	3.271885	3.62312	0.0222826	0.0117842	0.104593	0.0686664
chr17	59660390	59660489	16295223	0	+	0.383838	(0.36,0.39]	chr17	1321641	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	98	2	3.10337	3.271715	3.44006	4.833e-5	1.479e-7	0.00110097	7.86342e-6
chr11	63758991	63759091	11976858	0	+	0.38	(0.36,0.39]	chr11	918385	7	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	3.00115	3.2716950000000002	3.54224	0.0012486	4.51643e-5	0.0137762	9.43703e-4
chr2	20033111	20033204	2539725	0	-	0.344086	(0.33,0.36]	chr2	228406	6	UTR3	UTR3:EXON_MRNA	LAPTM4A	ENSG00000068697.7	ENST00000175091.5:ENST00000483117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.94141	3.2716950000000002	3.60198	6.01238e-4	1.08179e-4	0.00811676	0.00193141
chr1	17413536	17413626	874071	0	-	0.577778	(0.53,0.59]	chr1	89624	1	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	8	95	2	2.87405	3.2716000000000003	3.66915	6.55401e-5	2.76654e-6	0.00139975	9.47025e-5
chr8	127740414	127740502	9612674	0	+	0.522727	(0.49,0.53]	chr8	728498	1	CDS	CDS:UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	10	116	2	2.82985	3.271515	3.71318	2.05125e-4	3.38411e-8	0.00347938	2.20312e-6
chr12	79774745	79774843	13433692	0	-	0.316327	(0.29,0.33]	chr12	1057192	13	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.94844	3.271425	3.59441	0.00217122	3.40774e-5	0.0208941	7.50473e-4
chr10	80155554	80155653	11593198	0	-	0.444444	(0.42,0.455]	chr10	883015	48	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000463340.1:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	3.23178	3.271255	3.31073	1.94134e-4	5.01373e-6	0.00332542	1.55291e-4
chr8	15662225	15662296	9207758	0	+	0.422535	(0.42,0.455]	chr8	703416	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1:ENST00000511783.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.91373	3.2711449999999997	3.62856	0.00892357	4.02604e-4	0.0567495	0.00549837
chr1	39028882	39028940	145801	0	+	0.396552	(0.39,0.42]	chr1	18086	2	CDS	CDS:EXON_MRNA	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	3.19908	3.2710749999999997	3.34307	1.82682e-5	7.33136e-6	4.52458e-4	2.33612e-4
chr17	38850432	38850475	16532267	0	-	0.465116	(0.455,0.49]	chr17	1353499	1	CDS	CDS:EXON_MRNA:INTRON	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000584583.2:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	158	2	2.31753	3.271025	4.22452	3.12664e-4	2.10794e-10	0.00482683	2.63404e-8
chr3	45084846	45084945	4149833	0	-	0.414141	(0.39,0.42]	chr3	346745	27	UTR3	UTR3:EXON_MRNA	CDCP1	ENSG00000163814.8	ENST00000296129.6	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	3.0503	3.270875	3.49145	0.0350273	0.00570576	0.141505	0.0424438
chr9	104138017	104138091	10395360	0	+	0.405405	(0.39,0.42]	chr9	783176	1	CDS	CDS:UTR3:EXON_MRNA	SMC2	ENSG00000136824.19	ENST00000286398.11:ENST00000374793.8:ENST00000374787.7:ENST00000493955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	3.0503	3.270875	3.49145	0.0350273	0.00570576	0.141505	0.0424438
chr3	129170452	129170552	4443894	0	-	0.52	(0.49,0.53]	chr3	369318	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	76	2	2.82985	3.2707100000000002	3.71157	2.05125e-4	1.83225e-6	0.00347938	6.66083e-5
chr1	162590416	162590511	507857	0	+	0.515789	(0.49,0.53]	chr1	54811	2	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	2.90042	3.2706299999999997	3.64084	3.88511e-4	6.23258e-7	0.00534839	2.96204e-5
chr17	63585210	63585269	16317504	0	+	0.542373	(0.53,0.59]	chr17	1323663	1	CDS	CDS:EXON_MRNA	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	42	2	3.2425	3.270625	3.29875	0.00191422	2.6381e-4	0.018324	0.00427022
chr19	8321952	8321975	17219827	0	+	0.565217	(0.53,0.59]	chr19	1417490	1	CDS	CDS:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.56002	3.270585	3.98115	0.00634904	6.28226e-5	0.0446708	0.00124286
chrX	53378315	53378415	19076605	0	-	0.33	(0.29,0.33]	chrX	1622486	43	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	3.20367	3.27052	3.33737	6.11481e-4	7.07571e-6	0.00818575	2.08408e-4
chr1	173839456	173839546	550131	0	+	0.466667	(0.455,0.49]	chr1	58458	2	CDS	CDS:UTR3:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000650297.1:ENST00000648458.1:ENST00000649106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.27492	3.270425	4.26593	0.0193827	0.00372962	0.0943643	0.0302984
chr19	39972368	39972461	17327637	0	+	0.473118	(0.455,0.49]	chr19	1435371	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMC4	ENSG00000013275.8	ENST00000157812.7:ENST00000455878.2:ENST00000593455.5:ENST00000601697.5:ENST00000596386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.27492	3.270425	4.26593	0.0193827	0.00372962	0.0943643	0.0302984
chr7	50403609	50403709	8279167	0	+	0.38	(0.36,0.39]	chr7	630737	31	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.76778	3.2704	3.77302	0.0162599	0.00365703	0.0866586	0.0307238
chr11	119045155	119045233	12626415	0	-	0.538462	(0.53,0.59]	chr11	979740	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1:ENST00000532519.6	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	1.76849	3.270355	4.77222	0.0420665	6.67251e-4	0.158792	0.00867533
chr20	32194674	32194773	17941017	0	-	0.535354	(0.53,0.59]	chr20	1519244	23	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	1.87133	3.270345	4.66936	0.0308819	0.00103174	0.130016	0.0121443
chr1	95196815	95196914	362155	0	+	0.323232	(0.29,0.33]	chr1	35683	51	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.48886	3.270315	4.05177	0.0055888	3.72769e-5	0.0419759	8.08834e-4
chr2	126656157	126656210	2055952	0	+	0.830189	(0.59,1]	chr2	192593	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GYPC	ENSG00000136732.16	ENST00000484700.2:ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.67996	3.2702799999999996	3.8606	0.00470478	2.2997e-4	0.0363963	0.00352524
chr2	128113083	128113170	2059697	0	+	0.425287	(0.42,0.455]	chr2	193188	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.68905	3.270275	3.8515	0.0119089	0.00119301	0.0686664	0.0128249
chr4	48422960	48423058	4826829	0	+	0.438776	(0.42,0.455]	chr4	397749	10	UTR3	UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.68905	3.270275	3.8515	0.0119089	0.00119301	0.0686664	0.0128249
chr5	139626755	139626801	6250567	0	+	0.434783	(0.42,0.455]	chr5	487111	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000398733.8:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.68905	3.270275	3.8515	0.0119089	0.00119301	0.0686664	0.0128249
chr2	189563583	189563674	3082419	0	-	0.483516	(0.455,0.49]	chr2	272317	1	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.12994	3.270175	4.41041	0.0304832	0.00218771	0.130204	0.0202707
chr18	26065271	26065371	17046011	0	-	0.31	(0.29,0.33]	chr18	1401208	4	SS3_PROX	SS3_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	3.02243	3.270095	3.51776	9.33835e-4	9.94392e-5	0.0105624	0.00195926
chr22	35416338	35416404	18359551	0	+	0.545455	(0.53,0.59]	chr22	1561037	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5:ENST00000465557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	50	2	2.30988	3.2700500000000003	4.23022	0.00643853	1.38676e-5	0.0452349	3.5918e-4
chr4	53442652	53442707	4832279	0	+	0.490909	(0.49,0.53]	chr4	398395	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FIP1L1:RP11-231C18.3	ENSG00000145216.16:ENSG00000282278.1	ENST00000337488.11:ENST00000358575.9:ENST00000306932.10:ENST00000505125.5:ENST00000507166.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1:ENST00000511055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.99849	3.269835	3.54118	0.00630123	4.50577e-5	0.0445415	9.4221e-4
chr11	5430452	5430552	12242403	0	-	0.36	(0.33,0.36]	chr11	946181	832	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	18	2	2.17058	3.26968	4.36878	0.01664	0.0021194	0.0878065	0.0198008
chr1	26124760	26124860	107864	0	+	0.3	(0.29,0.33]	chr1	12679	23	UTR3	UTR3:EXON_MRNA	PDIK1L	ENSG00000175087.10	ENST00000619836.4:ENST00000374269.2:ENST00000374271.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr11	47818524	47818624	12389764	0	-	0.3	(0.29,0.33]	chr11	957519	4	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr2	151474017	151474072	2134922	0	+	0.327273	(0.29,0.33]	chr2	197860	2	CDS	CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr2	169637523	169637622	2196712	0	+	0.30303	(0.29,0.33]	chr2	201011	1	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000677750.1:ENST00000678721.1:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr2	227560030	227560129	2415439	0	+	0.313131	(0.29,0.33]	chr2	217297	57	UTR3	UTR3:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000310078.13	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr21	15041098	15041198	18168678	0	-	0.33	(0.29,0.33]	chr21	1542686	263	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr9	107331668	107331722	10410563	0	+	0.314815	(0.29,0.33]	chr9	784034	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.67277	3.26964	3.86651	0.0255386	0.0112245	0.117089	0.0665375
chr13	39014376	39014476	13976242	0	-	0.48	(0.455,0.49]	chr13	1096566	18	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000602512.1:ENST00000602899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	105	2	3.09243	3.269615	3.4468	6.08908e-6	9.07948e-7	2.00007e-4	3.68762e-5
chr5	44811914	44811967	5961544	0	+	0.320755	(0.29,0.33]	chr5	467205	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.80161	3.26961	3.73761	0.00415667	2.33029e-4	0.0325842	0.00355688
chr1	167920034	167920090	1349119	0	-	0.303571	(0.29,0.33]	chr1	138231	2	CDS	CDS:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8:ENST00000458574.1	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	3.11842	3.269445	3.42047	1.8012e-4	1.21194e-4	0.003142	0.00210755
chr5	151850510	151850604	6299874	0	+	0.531915	(0.53,0.59]	chr5	491969	8	EXON_PSEUDO	EXON_PSEUDO	RP11-54C4.2	ENSG00000270978.1	ENST00000603996.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	38	2	2.35511	3.2694199999999998	4.18373	0.0445399	1.85867e-5	0.172163	4.56627e-4
chr2	53869375	53869456	2664136	0	-	0.419753	(0.39,0.42]	chr2	238125	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000488687.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	1.89968	3.269255	4.63883	0.0298458	5.68159e-4	0.130016	0.0077844
chr1	58781678	58781777	1055677	0	-	0.454545	(0.42,0.455]	chr1	108284	10	UTR3	UTR3:EXON_MRNA	JUN	ENSG00000177606.8	ENST00000678696.1:ENST00000371222.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	51	2	3.0301	3.2691749999999997	3.50825	1.85605e-4	5.86898e-5	0.00297242	0.00129243
chr19	12876089	12876180	17471739	0	-	0.648352	(0.59,1]	chr19	1463249	1	CDS	CDS:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8:ENST00000588777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	68	2	2.53147	3.2688550000000003	4.00624	0.00807544	1.12192e-4	0.0531324	0.00199438
chr20	35548807	35548865	17769386	0	+	0.603448	(0.59,1]	chr20	1501120	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000447986.5:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000413587.5:ENST00000461043.6:ENST00000496172.5:ENST00000489071.5:ENST00000482338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	68	2	2.53147	3.2688550000000003	4.00624	0.00807544	1.12192e-4	0.0531324	0.00199438
chr2	75659239	75659338	1894601	0	+	0.40404	(0.39,0.42]	chr2	179770	41	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.59744	3.2687	3.93996	0.00841622	0.00572981	0.054565	0.0417368
chr1	154946234	154946329	1305915	0	-	0.557895	(0.53,0.59]	chr1	131551	8	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.71318	3.268625	3.82407	0.0179666	0.00340745	0.0918323	0.0283456
chr17	68522840	68522926	16337324	0	+	0.534884	(0.53,0.59]	chr17	1325345	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-120M18.2:PRKAR1A	ENSG00000267009.6:ENSG00000108946.15	ENST00000590353.1:ENST00000589017.5:ENST00000358598.6:ENST00000392711.5:ENST00000585427.5:ENST00000585608.5:ENST00000589228.6:ENST00000585460.1:ENST00000536854.6:ENST00000392710.8:ENST00000588702.5:ENST00000585981.5:ENST00000589480.5:ENST00000586397.5:ENST00000588178.5:ENST00000588188.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	25	2	2.71318	3.268625	3.82407	0.0179666	0.00340745	0.0918323	0.0283456
chrX	119469660	119469757	18841514	0	+	0.505155	(0.49,0.53]	chrX	1605559	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9:ENST00000460013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	3.19483	3.268535	3.34224	6.77168e-5	6.47355e-6	0.0013157	2.10845e-4
chr19	43750641	43750741	17580491	0	-	0.62	(0.59,1]	chr19	1479078	1	CDS_START	CDS_START:CDS:EXON_MRNA	SMG9	ENSG00000105771.14	ENST00000270066.11:ENST00000601170.5:ENST00000595700.5:ENST00000602222.5:ENST00000597586.5:ENST00000601925.5:ENST00000599804.5:ENST00000596714.1:ENST00000598886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.5215	3.2684750000000005	4.01545	0.032241	0.0251889	0.135671	0.114168
chr7	103075174	103075272	8440700	0	+	0.816327	(0.59,1]	chr7	644925	4	UTR5	UTR5:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	25	2	2.5215	3.2684750000000005	4.01545	0.032241	0.0251889	0.135671	0.114168
chr7	73297542	73297642	8331813	0	+	0.59	(0.53,0.59]	chr7	634444	9	EXON_PSEUDO	EXON_PSEUDO	POM121B	ENSG00000205578.6	ENST00000380760.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	63	2	1.96946	3.2683299999999997	4.5672	0.0082201	1.40998e-6	0.0534646	5.86085e-5
chr19	49158555	49158653	17369092	0	+	0.397959	(0.39,0.42]	chr19	1442610	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRPM4	ENSG00000130529.16	ENST00000598691.5:ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000599628.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.18155	3.2683150000000003	4.35508	0.0283931	5.2004e-6	0.127654	1.59965e-4
chr2	27026735	27026831	1690568	0	+	0.635417	(0.59,1]	chr2	165296	5	UTR3	UTR3:EXON_MRNA	MAPRE3	ENSG00000084764.12	ENST00000233121.7:ENST00000405074.7	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.82129	3.268195	4.7151	0.0227814	0.00412279	0.105293	0.0325842
chr14	22922175	22922240	14527901	0	-	0.492308	(0.49,0.53]	chr14	1138127	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000557443.5:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5:ENST00000557758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.41364	3.268135	4.12263	0.0112538	0.00591451	0.0665375	0.0427941
chrX	141908561	141908647	18883552	0	+	0.511628	(0.49,0.53]	chrX	1608999	4	CDS	CDS:EXON_MRNA	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.41364	3.268135	4.12263	0.0112538	0.00591451	0.0665375	0.0427941
chr22	35838511	35838609	18495454	0	-	0.540816	(0.53,0.59]	chr22	1577878	17	INTRON	INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000359369.8:ENST00000416721.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	106	2	2.24945	3.26809	4.28673	0.00230882	1.92014e-8	0.0219135	1.36381e-6
chr12	56639172	56639239	13352115	0	-	0.537313	(0.53,0.59]	chr12	1051738	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000551182.1:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	252	2	3.08854	3.2679850000000004	3.44743	1.87986e-7	1.22601e-7	1.07931e-5	6.67084e-6
chr20	50890825	50890921	18006290	0	-	0.395833	(0.39,0.42]	chr20	1526241	10	UTR3	UTR3:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.85416	3.26785	3.68154	0.00225069	3.05414e-4	0.021386	0.00442973
chr11	65654571	65654666	12422544	0	-	0.6	(0.59,1]	chr11	964047	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RELA	ENSG00000173039.19	ENST00000615805.4:ENST00000612991.4:ENST00000406246.8:ENST00000525693.5:ENST00000308639.13:ENST00000526283.6:ENST00000531484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.19052	3.267695	4.34487	0.0237927	0.0123678	0.109413	0.0705839
chr2	10445154	10445209	2509436	0	-	0.345455	(0.33,0.36]	chr2	226513	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ODC1	ENSG00000115758.13	ENST00000234111.9:ENST00000405333.5:ENST00000446285.5:ENST00000443218.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.6995	3.26768	3.83586	0.017838	1.7178e-4	0.0934844	0.00302124
chr7	130173631	130173729	9063218	0	-	0.397959	(0.39,0.42]	chr7	692147	1	CDS	CDS:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	3.23057	3.267645	3.30472	3.34829e-4	8.54292e-6	0.00509483	2.41736e-4
chr8	38139529	38139621	9291787	0	+	0.347826	(0.33,0.36]	chr8	710654	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	61	2	3.16759	3.2673750000000004	3.36716	2.36136e-5	8.42594e-6	5.58343e-4	2.61275e-4
chr3	184171149	184171247	3948115	0	+	0.428571	(0.42,0.455]	chr3	331990	5	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.90616	3.26736	3.62856	0.00162359	4.02604e-4	0.0169915	0.00549837
chrX	119470442	119470513	18841525	0	+	0.549296	(0.53,0.59]	chrX	1605564	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000317881.9:ENST00000460013.1:ENST00000463551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	2.34398	3.267265	4.19055	0.00143671	4.3974e-8	0.0154399	2.75435e-6
chr6	28478589	28478689	7651750	0	-	0.49	(0.455,0.49]	chr6	583051	3	INTRON	INTRON	RP1-29K1.6	ENSG00000287804.1	ENST00000666335.1	lncRNA	lncRNA	lncRNA	lncRNA	44	396	2	3.0378	3.267235	3.49667	2.39875e-8	5.64197e-10	1.79711e-6	6.30487e-8
chr16	2972952	2973008	15827586	0	-	0.571429	(0.53,0.59]	chr16	1262866	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKMYT1	ENSG00000127564.17	ENST00000431515.6:ENST00000574333.1:ENST00000440027.6:ENST00000575040.1:ENST00000262300.13:ENST00000575981.1:ENST00000574680.1:ENST00000574385.5:ENST00000574730.5:ENST00000573944.5:ENST00000382240.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	54	2	3.21941	3.2672	3.31499	0.00266171	3.217e-5	0.0240332	7.12922e-4
chr17	32481029	32481128	16201202	0	+	0.656566	(0.59,1]	chr17	1308289	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000457654.6:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	1.96394	3.267155	4.57037	0.0453144	0.0054994	0.174798	0.0402071
chr20	37179258	37179356	17777357	0	+	0.72449	(0.59,1]	chr20	1501988	2	UTR5	UTR5:EXON_MRNA:INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.96394	3.267155	4.57037	0.0453144	0.0054994	0.174798	0.0402071
chr7	30504775	30504841	8749419	0	-	0.757576	(0.59,1]	chr7	667652	2	UTR5	UTR5:EXON_MRNA:INTRON	GGCT:RP4-777O23.3	ENSG00000006625.18:ENSG00000281039.1	ENST00000275428.9:ENST00000440082.5:ENST00000005374.10:ENST00000409144.5:ENST00000447901.1:ENST00000409390.5:ENST00000598361.4:ENST00000409436.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	1.96394	3.267155	4.57037	0.0453144	0.0054994	0.174798	0.0402071
chr12	57059878	57059978	13353772	0	-	0.45	(0.42,0.455]	chr12	1052212	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.50649	3.267105	4.02772	0.0302857	4.30844e-5	0.130016	0.00100091
chr1	160311942	160312018	1328918	0	-	0.486842	(0.455,0.49]	chr1	136069	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	3.09445	3.26703	3.43961	6.1765e-4	8.42878e-5	0.00822794	0.0015859
chr19	49795629	49795683	17372744	0	+	0.574074	(0.53,0.59]	chr19	1443702	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	2.36991	3.26687	4.16383	0.00659193	0.00501452	0.0454205	0.0370872
chr6	33202909	33203007	7121296	0	+	0.602041	(0.59,1]	chr6	547396	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A7	ENSG00000112473.18	ENST00000374675.7:ENST00000374677.8:ENST00000463972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	179	2	2.46143	3.26687	4.07231	7.20836e-4	5.57118e-7	0.00906734	2.43204e-5
chr10	60788146	60788234	11063626	0	+	0.386364	(0.36,0.39]	chr10	841944	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	66	2	3.12317	3.2662899999999997	3.40941	3.13585e-5	5.03355e-6	6.98935e-4	1.70872e-4
chr10	43387593	43387688	11461769	0	-	0.473684	(0.455,0.49]	chr10	873955	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	59	2	2.97397	3.26613	3.55829	8.30118e-5	4.15156e-5	0.00156827	9.7509e-4
chr4	10103296	10103395	5311894	0	-	0.575758	(0.53,0.59]	chr4	427713	38	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.37399	3.26602	4.15805	0.0126178	0.00680952	0.0717599	0.0468196
chr3	53241188	53241245	4189162	0	-	0.649123	(0.59,1]	chr3	353828	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000487660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	3.11647	3.265915	3.41536	0.00535979	0.00164655	0.0406564	0.0163443
chr4	24576416	24576503	5359201	0	-	0.505747	(0.49,0.53]	chr4	429884	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000511553.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	131	2	3.21939	3.26569	3.31199	1.09404e-6	1.04469e-6	4.58032e-5	4.32415e-5
chr10	46006497	46006591	11470929	0	-	0.457447	(0.455,0.49]	chr10	874825	16	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	11	127	2	2.30304	3.2653000000000003	4.22756	0.00116102	7.21411e-10	0.0130851	7.83097e-8
chr7	127887956	127888012	8517309	0	+	0.517857	(0.49,0.53]	chr7	649730	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	2.78773	3.264995	3.74226	0.00257389	1.44724e-6	0.0235767	5.46137e-5
chr11	77616399	77616498	12473506	0	-	0.393939	(0.39,0.42]	chr11	970289	20	UTR3	UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	2.76711	3.2648	3.76249	3.61954e-4	1.04037e-5	0.00544764	2.85665e-4
chr11	34453863	34453926	11906158	0	+	0.365079	(0.36,0.39]	chr11	909793	2	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.63115	3.26476	3.89837	0.0245975	9.25116e-5	0.114841	0.00169222
chr15	43194741	43194841	14895099	0	+	0.39	(0.36,0.39]	chr15	1170889	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CCNDBP1	ENSG00000166946.14	ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000565296.5:ENST00000568507.5:ENST00000444658.7:ENST00000565958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.63115	3.26476	3.89837	0.0245975	9.25116e-5	0.114841	0.00169222
chr6	85549722	85549794	7825120	0	-	0.361111	(0.36,0.39]	chr6	599478	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SNX14	ENSG00000271793.2:ENSG00000135317.14	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682171.1:ENST00000684150.1:ENST00000683785.1:ENST00000682497.1:ENST00000684647.1:ENST00000683643.1:ENST00000682023.1:ENST00000682022.1:ENST00000683542.1:ENST00000683126.1:ENST00000683857.1:ENST00000683898.1:ENST00000682854.1:ENST00000682491.1:ENST00000682174.1:ENST00000684239.1:ENST00000682939.1:ENST00000684570.1:ENST00000682057.1:ENST00000682878.1:ENST00000683880.1:ENST00000684422.1:ENST00000682504.1:ENST00000683726.1:ENST00000684680.1:ENST00000683196.1:ENST00000683458.1:ENST00000683803.1:ENST00000684281.1:ENST00000682991.1:ENST00000683754.1:ENST00000683481.1:ENST00000682455.1:ENST00000682034.1:ENST00000684451.1:ENST00000683583.1:ENST00000682776.1:ENST00000683873.1:ENST00000683878.1:ENST00000683195.1:ENST00000682995.1:ENST00000682374.1:ENST00000683698.1:ENST00000682454.1:ENST00000682694.1:ENST00000682412.1:ENST00000682682.1:ENST00000346348.7:ENST00000314673.8:ENST00000682633.1:ENST00000683085.1:ENST00000682688.1:ENST00000684319.1:ENST00000683577.1:ENST00000682709.1:ENST00000684299.1:ENST00000682133.1:ENST00000682594.1:ENST00000683473.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684118.1:ENST00000681981.1:ENST00000682738.1:ENST00000509338.6:ENST00000684717.1:ENST00000682660.1:ENST00000683073.1:ENST00000515216.6:ENST00000684581.1:ENST00000683479.1:ENST00000682464.1:ENST00000684108.1:ENST00000682514.1:ENST00000684017.1:ENST00000684273.1:ENST00000513865.5:ENST00000505648.5:ENST00000508980.5:ENST00000369627.6:ENST00000503491.5:ENST00000508658.6:ENST00000683097.1:ENST00000683541.1:ENST00000683759.1:ENST00000369635.7:ENST00000684462.1:ENST00000682168.1:ENST00000513869.2:ENST00000514419.6:ENST00000683999.1:ENST00000504191.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.63115	3.26476	3.89837	0.0245975	9.25116e-5	0.114841	0.00169222
chr1	21220054	21220131	887354	0	-	0.662338	(0.59,1]	chr1	91698	1	CDS	CDS:EXON_MRNA	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000374893.11:ENST00000649812.1:ENST00000357071.8:ENST00000531334.1:ENST00000436918.6:ENST00000264205.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.68392	3.264745	3.84557	0.0410704	0.0202468	0.163285	0.0984041
chr11	498571	498627	12226412	0	-	0.625	(0.59,1]	chr11	943348	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	25	2	2.68392	3.264745	3.84557	0.0410704	0.0202468	0.163285	0.0984041
chr2	219540062	219540158	3192812	0	-	0.635417	(0.59,1]	chr2	281281	7	CDS	CDS:EXON_MRNA	CHPF	ENSG00000123989.14	ENST00000535926.2:ENST00000243776.11	protein_coding	protein_coding	protein_coding	protein_coding	1	25	2	2.68392	3.264745	3.84557	0.0410704	0.0202468	0.163285	0.0984041
chr20	63489073	63489152	18033739	0	-	0.632911	(0.59,1]	chr20	1529681	3	CDS	CDS:UTR3:EXON_MRNA	EEF1A2	ENSG00000101210.13	ENST00000675519.1:ENST00000217182.6:ENST00000298049.12	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	1	25	2	2.68392	3.264745	3.84557	0.0410704	0.0202468	0.163285	0.0984041
chr7	127591299	127591379	8514804	0	+	0.7	(0.59,1]	chr7	649588	1	UTR3	UTR3:EXON_MRNA	ARF5	ENSG00000004059.11	ENST00000463733.5:ENST00000000233.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.68392	3.264745	3.84557	0.0410704	0.0202468	0.163285	0.0984041
chr9	112037140	112037239	10801467	0	-	0.333333	(0.33,0.36]	chr9	818283	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-4O1.2	ENSG00000259953.2	ENST00000658557.1:ENST00000563434.1	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	3.15976	3.264675	3.36959	0.00437542	0.0014168	0.0340502	0.0145694
chr14	102727099	102727198	14500038	0	+	0.373737	(0.36,0.39]	chr14	1133640	7	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.94286	3.264615	3.58637	0.00128446	5.84377e-4	0.0136229	0.00793559
chr8	11844188	11844241	9699197	0	-	0.45283	(0.42,0.455]	chr8	734803	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.7523	3.26448	3.77666	0.0153283	1.85215e-4	0.0828908	0.00296795
chr1	207757590	207757642	689839	0	+	0.384615	(0.36,0.39]	chr1	70064	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	70	2	2.985	3.264275	3.54355	1.07075e-4	1.35556e-6	0.00206452	5.16469e-5
chr12	6670759	6670838	13188058	0	-	0.481013	(0.455,0.49]	chr12	1032579	1	CDS	CDS:EXON_MRNA	ZNF384	ENSG00000126746.18	ENST00000319770.7:ENST00000683879.1:ENST00000396801.7:ENST00000361959.7:ENST00000355772.8	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.12843	3.26426	3.40009	0.00392855	0.00120619	0.0322851	0.0129255
chr15	90967034	90967130	15439140	0	-	0.489583	(0.455,0.49]	chr15	1221337	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000560423.5:ENST00000442656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.12843	3.26426	3.40009	0.00392855	0.00120619	0.0322851	0.0129255
chr2	27329201	27329282	2569990	0	-	0.481481	(0.455,0.49]	chr2	231404	2	CDS	CDS:EXON_MRNA	GTF3C2	ENSG00000115207.13	ENST00000264720.7:ENST00000359541.6:ENST00000454704.5:ENST00000415683.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.12843	3.26426	3.40009	0.00392855	0.00120619	0.0322851	0.0129255
chr1	1787330	1787430	829685	0	-	0.6	(0.59,1]	chr1	82934	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.29319	3.264245	4.2353	0.0165254	0.00750123	0.0873033	0.0495953
chr18	12986671	12986766	16764013	0	+	0.315789	(0.29,0.33]	chr18	1382771	16	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.45373	3.264215	4.0747	0.0156405	0.00577533	0.084273700000000007	0.0417823
chr6	169704376	169704472	7554180	0	+	0.40625	(0.39,0.42]	chr6	576656	15	UTR3	UTR3:EXON_MRNA	C6orf120	ENSG00000185127.6	ENST00000332290.3	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.86368	3.264175	3.66467	0.0101619	3.60066e-4	0.0627153	0.00544157
chr12	57269751	57269832	13354879	0	-	0.567901	(0.53,0.59]	chr12	1052530	1	CDS	CDS:UTR3:EXON_MRNA	RP11-123K3.4:R3HDM2	ENSG00000258830.1:ENSG00000179912.20	ENST00000548184.1:ENST00000393811.6:ENST00000347140.7:ENST00000402412.5:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000429355.6:ENST00000403821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	1.96946	3.26403	4.5586	0.0082201	0.00161229	0.0534646	0.0169168
chr19	6073440	6073527	17212226	0	+	0.551724	(0.53,0.59]	chr19	1415664	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	CTC-232P5.3:CTC-232P5.4	ENSG00000267262.1:ENSG00000267589.1	ENST00000587759.1:ENST00000586415.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	6	44	2	2.2203	3.26403	4.30776	0.00407289	0.0016462	0.0324137	0.0163443
chr1	27408188	27408288	908785	0	-	0.48	(0.455,0.49]	chr1	95012	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.52734	3.2640149999999997	4.00069	0.00792433	5.13615e-5	0.0523592	0.00104999
chr2	195683698	195683767	2290403	0	+	0.376812	(0.36,0.39]	chr2	207592	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	3.06292	3.263945	3.46497	0.00499846	0.00105709	0.0370021	0.0123035
chr12	54404429	54404475	13343820	0	-	0.5	(0.49,0.53]	chr12	1049800	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000551861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.01464	3.26388	4.51312	0.0205094	0.00156636	0.0991175	0.0156889
chr12	54403624	54403701	13343808	0	-	0.558442	(0.53,0.59]	chr12	1049792	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000550141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.65894	3.263515	3.86809	0.0193255	1.18973e-4	0.0943643	0.00207755
chr6	34245365	34245461	7124348	0	+	0.65625	(0.59,1]	chr6	548262	6	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	30	595	2	3.09168	3.263465	3.43525	2.17672e-6	6.41459e-8	8.48718e-5	3.82161e-6
chr22	20952478	20952576	18300208	0	+	0.428571	(0.42,0.455]	chr22	1553647	28	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	315	2	3.05394	3.2634499999999997	3.47296	3.31105e-8	3.43669e-9	2.16744e-6	3.35279e-7
chr4	145108014	145108112	5145988	0	+	0.418367	(0.39,0.42]	chr4	416320	1	CDS	CDS:EXON_MRNA:INTRON	ABCE1	ENSG00000164163.11	ENST00000502586.5:ENST00000296577.9:ENST00000507193.5:ENST00000502803.5:ENST00000506506.5:ENST00000504292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	2.38186	3.2633150000000004	4.14477	0.00601449	2.09513e-5	0.0434483	5.04211e-4
chr2	135093614	135093693	2080128	0	+	0.405063	(0.39,0.42]	chr2	195098	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.37759	3.2632250000000003	4.14886	0.0428865	0.00415881	0.161091	0.0325842
chr3	47016522	47016617	4158539	0	-	0.4	(0.39,0.42]	chr3	347792	2	UTR3	UTR3:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000431180.5:ENST00000409792.4:ENST00000330022.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.37759	3.2632250000000003	4.14886	0.0428865	0.00415881	0.161091	0.0325842
chr16	70571146	70571199	15730172	0	+	0.584906	(0.53,0.59]	chr16	1253025	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	1.65775	3.26299	4.86823	0.0573191	4.35895e-4	0.196623	0.00623608
chrX	108084685	108084781	19163717	0	-	0.333333	(0.33,0.36]	chrX	1629964	6	UTR3	UTR3:EXON_MRNA	PSMD10	ENSG00000101843.19	ENST00000217958.8:ENST00000372296.5:ENST00000372295.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.78095	3.2629849999999996	3.74502	0.00388614	2.19782e-4	0.0322851	0.00339463
chr6	142218643	142218742	7443001	0	+	0.40404	(0.39,0.42]	chr6	569619	1	UTR3	UTR3:EXON_MRNA	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.19588	3.2628399999999997	3.3298	0.00321212	0.00165391	0.0280721	0.0163614
chr10	11886549	11886648	11369013	0	-	0.494949	(0.49,0.53]	chr10	866995	119	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.92082	3.26279	3.60476	0.00827037	4.52633e-4	0.0534766	0.00642319
chr6	30601169	30601264	7658382	0	-	0.505263	(0.49,0.53]	chr6	583973	9	UTR3	UTR3:EXON_MRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.92082	3.26279	3.60476	0.00827037	4.52633e-4	0.0534766	0.00642319
chr6	44253598	44253694	7161628	0	+	0.583333	(0.53,0.59]	chr6	553873	1	UTR3	UTR3:EXON_MRNA	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	79	871	2	3.15431	3.2626600000000003	3.37101	3.84924e-9	6.18483e-10	3.39381e-7	7.54141e-8
chr20	63890417	63890511	17866829	0	+	0.478723	(0.455,0.49]	chr20	1511295	5	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.40664	3.2626	4.1185600000000004	0.0123662	2.49433e-5	0.0705839	5.8178e-4
chr7	116500351	116500451	8475330	0	+	0.52	(0.49,0.53]	chr7	647289	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAV2	ENSG00000105971.15	ENST00000484871.5:ENST00000485561.5:ENST00000472470.5:ENST00000467035.5:ENST00000477018.5:ENST00000498493.5:ENST00000462876.5:ENST00000478226.5:ENST00000222693.5:ENST00000343213.2:ENST00000393480.3:ENST00000495841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	3.00538	3.262595	3.51981	6.88328e-4	2.13868e-4	0.00876781	0.0033174
chr11	17077428	17077477	12295055	0	-	0.632653	(0.59,1]	chr11	950309	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000525828.1:ENST00000533969.1:ENST00000527571.1:ENST00000534329.1:ENST00000528074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	370	2	2.5568	3.2625200000000003	3.96824	2.97285e-4	8.17731e-9	0.00470201	6.52095e-7
chr11	64764800	64764898	12419180	0	-	0.418367	(0.39,0.42]	chr11	962880	3	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	100	2	2.86304	3.2625	3.66196	3.83244e-5	1.43947e-7	9.18735e-4	7.66376e-6
chr6	119189809	119189883	7919430	0	-	0.513514	(0.49,0.53]	chr6	606489	3	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.26641	3.26239	4.25837	0.0190546	2.60666e-7	0.093872	1.26854e-5
chr12	110296649	110296712	13085395	0	+	0.428571	(0.42,0.455]	chr12	1020479	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550248.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	1.99701	3.262335	4.52766	0.0235036	1.58778e-6	0.111072	5.89925e-5
chr1	228394804	228394893	1539495	0	-	0.52809	(0.49,0.53]	chr1	154116	1	CDS	CDS:EXON_MRNA	TRIM11	ENSG00000154370.16	ENST00000493030.6:ENST00000284551.11:ENST00000602582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chr2	27441712	27441812	1692607	0	+	0.51	(0.49,0.53]	chr2	166072	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NRBP1	ENSG00000115216.14	ENST00000233557.7:ENST00000379852.8:ENST00000379863.7:ENST00000460499.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chr2	86470339	86470408	1927230	0	+	0.507246	(0.49,0.53]	chr2	181621	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000485171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chr3	15046886	15046985	3324802	0	+	0.515152	(0.49,0.53]	chr3	292696	40	UTR3	UTR3:EXON_MRNA:INTRON	NR2C2	ENSG00000177463.15	ENST00000617312.4:ENST00000439011.5:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chr6	34281173	34281273	7672413	0	-	0.52	(0.49,0.53]	chr6	588026	16	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chr8	60742522	60742621	9354224	0	+	0.515152	(0.49,0.53]	chr8	715342	11	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CHD7	ENSG00000171316.12	ENST00000423902.7:ENST00000524602.5:ENST00000525508.1:ENST00000527825.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chrX	120431422	120431462	19196072	0	-	0.525	(0.49,0.53]	chrX	1631967	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.78962	3.26228	3.73494	0.0189345	0.0129044	0.0934721	0.0725185
chr9	99230424	99230519	10384060	0	+	0.357895	(0.33,0.36]	chr9	782339	1	UTR3	UTR3:EXON_MRNA	SEC61B	ENSG00000106803.10	ENST00000498603.5:ENST00000223641.5	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.51887	3.2618850000000004	4.0049	0.0358636	1.77926e-6	0.147298	6.4851e-5
chr5	146144471	146144537	6891370	0	-	0.409091	(0.39,0.42]	chr5	527528	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	1.75252	3.2617900000000004	4.77106	0.0297286	3.03764e-4	0.130016	0.00472028
chr20	57519245	57519345	18021772	0	-	0.43	(0.42,0.455]	chr20	1527432	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608858.5:ENST00000608108.1:ENST00000608720.5:ENST00000607923.5:ENST00000481655.2:ENST00000608158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	71	2	3.14957	3.26173	3.37389	9.82296e-5	5.15897e-6	0.00193927	1.58845e-4
chr17	35726122	35726219	16207524	0	+	0.463918	(0.455,0.49]	chr17	1309154	26	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.92901	3.2616899999999998	3.59437	0.00141135	3.2026e-5	0.0151901	7.10499e-4
chr12	64404638	64404721	12921654	0	+	0.710843	(0.59,1]	chr12	1006985	4	UTR5	UTR5:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.28778	3.26154	4.2353	0.0556537	0.0165254	0.191528	0.0873033
chr19	5219387	5219467	17435067	0	-	0.6375	(0.59,1]	chr19	1455688	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5:ENST00000592099.5:ENST00000588012.5:ENST00000262963.10:ENST00000589851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.28778	3.26154	4.2353	0.0556537	0.0165254	0.191528	0.0873033
chr2	74526999	74527059	2743276	0	-	0.583333	(0.53,0.59]	chr2	244593	2	CDS	CDS:UTR3:EXON_MRNA	AUP1	ENSG00000115307.17	ENST00000425118.5:ENST00000377526.4:ENST00000463900.5:ENST00000466894.5:ENST00000486234.1:ENST00000462297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	2.37663	3.26154	4.14645	0.00121282	2.32261e-5	0.012983	6.06413e-4
chr20	36784594	36784693	17958468	0	-	0.616162	(0.59,1]	chr20	1521662	69	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10:ENST00000465671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	24	2	2.28778	3.26154	4.2353	0.0556537	0.0165254	0.191528	0.0873033
chr9	134139819	134139877	10505218	0	+	0.672414	(0.59,1]	chr9	794810	1	UTR5	UTR5:EXON_MRNA	WDR5	ENSG00000196363.10	ENST00000608937.5:ENST00000608739.5:ENST00000358625.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.28778	3.26154	4.2353	0.0556537	0.0165254	0.191528	0.0873033
chr9	33113453	33113553	10631586	0	-	0.5	(0.49,0.53]	chr9	803437	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.78794	3.26144	3.73494	0.0189345	0.00251838	0.0934721	0.0226599
chr3	49534650	49534747	3460775	0	+	0.536082	(0.53,0.59]	chr3	302129	16	UTR3	UTR3:EXON_MRNA	DAG1	ENSG00000173402.12	ENST00000515359.6:ENST00000538711.5:ENST00000539901.5:ENST00000541308.5:ENST00000545947.5:ENST00000308775.7	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.90978	3.26136	3.61294	0.0310038	0.00857883	0.130016	0.0552386
chr7	135578750	135578832	8552606	0	+	0.390244	(0.39,0.42]	chr7	652713	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	3.05461	3.261265	3.46792	8.55091e-4	7.10972e-5	0.0105173	0.00136974
chr17	42025157	42025254	16227816	0	+	0.43299	(0.42,0.455]	chr17	1312741	14	UTR3	UTR3:EXON_MRNA	NKIRAS2	ENSG00000168256.18	ENST00000307641.9:ENST00000393885.9:ENST00000393879.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	3.05889	3.26119	3.46349	0.00524205	9.0025e-4	0.0399155	0.0102618
chr5	151810505	151810604	6299831	0	+	0.323232	(0.29,0.33]	chr5	491960	51	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.99403	3.261145	4.52826	0.0202925	1.39616e-6	0.098158	5.29508e-5
chr8	47773110	47773206	9815453	0	-	0.28125	[0,0.29]	chr8	742453	1	UTR3	UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.3458	3.2611	4.1764	0.0116272	1.69626e-5	0.0685835	4.28575e-4
chr17	59674771	59674843	16295382	0	+	0.361111	(0.36,0.39]	chr17	1321697	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000579815.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	80	2	2.82476	3.26096	3.69716	8.21459e-4	1.01017e-7	0.0102028	5.6272e-6
chr12	124782682	124782782	13600190	0	-	0.49	(0.455,0.49]	chr12	1071676	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	52	2	2.83283	3.26093	3.68903	6.06795e-4	1.71879e-5	0.00817698	4.32994e-4
chr19	7631472	7631556	17217737	0	+	0.547619	(0.53,0.59]	chr19	1416869	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PET100:CTD-3214H19.4	ENSG00000229833.10:ENSG00000268400.5	ENST00000594797.6:ENST00000598664.5:ENST00000623154.1:ENST00000599243.5:ENST00000456958.7:ENST00000595866.1:ENST00000598540.6:ENST00000600836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	3	46	2	2.16037	3.2608499999999996	4.36133	0.0254312	5.91026e-6	0.117089	1.77972e-4
chr9	127448336	127448423	10859978	0	-	0.448276	(0.42,0.455]	chr9	822657	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	347	2	2.86843	3.260805	3.65318	4.25425e-7	1.43245e-10	2.14689e-5	1.86337e-8
chr3	184171050	184171149	3948114	0	+	0.555556	(0.53,0.59]	chr3	331990	4	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.90978	3.260555	3.61133	0.00857883	4.55298e-4	0.0552386	0.00608573
chr7	106112139	106112208	8977833	0	-	0.57971	(0.53,0.59]	chr7	687052	1	CDS_START	CDS_START:CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000470347.1:ENST00000634737.1:ENST00000483448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.90978	3.260555	3.61133	0.00857883	4.55298e-4	0.0552386	0.00608573
chr1	171579409	171579466	537496	0	+	0.561404	(0.53,0.59]	chr1	57708	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	3.2308500000000002	3.260475	3.2901	2.81517e-4	3.76429e-5	0.00415519	9.04578e-4
chr14	73715708	73715806	14702322	0	-	0.428571	(0.42,0.455]	chr14	1151256	7	UTR3	UTR3:EXON_MRNA	MIDEAS	ENSG00000156030.13	ENST00000394071.6:ENST00000476562.5:ENST00000286523.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	3.05889	3.26029	3.46169	0.03884	0.00524205	0.149227	0.0399155
chr12	7921312	7921412	13193176	0	-	0.59	(0.53,0.59]	chr12	1033481	22	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5:ENST00000469295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	65	2	2.82958	3.260115	3.69065	3.04331e-4	8.75863e-5	0.00472028	0.00162799
chr1	52087054	52087153	192281	0	+	0.363636	(0.36,0.39]	chr1	24661	4	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000489308.6:ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.00093	3.2598399999999996	4.51875	0.00996106	1.56348e-6	0.0621728	5.82084e-5
chr10	73007764	73007855	11568235	0	-	0.384615	(0.36,0.39]	chr10	880432	7	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.00093	3.2598399999999996	4.51875	0.00996106	1.56348e-6	0.0621728	5.82084e-5
chr4	82824614	82824674	5496479	0	-	0.4	(0.39,0.42]	chr4	440171	2	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	3.19588	3.25933	3.32278	0.00321212	2.95704e-5	0.0280721	6.70125e-4
chr1	167924496	167924537	1349165	0	-	0.439024	(0.42,0.455]	chr1	138241	1	CDS	CDS:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8:ENST00000458574.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr1	227028656	227028755	1535069	0	-	0.454545	(0.42,0.455]	chr1	153663	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC42BPA	ENSG00000143776.19	ENST00000366766.7:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.7:ENST00000448940.5:ENST00000442054.5:ENST00000429440.5:ENST00000441725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr11	65775282	65775381	12422736	0	-	0.424242	(0.42,0.455]	chr11	964115	15	UTR3	UTR3:EXON_MRNA	AP5B1	ENSG00000254470.3	ENST00000532090.3	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr12	112103327	112103427	13543503	0	-	0.44	(0.42,0.455]	chr12	1065706	55	INTRON	INTRON	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5:ENST00000549711.5:ENST00000551858.1:ENST00000547133.1:ENST00000548627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr13	72763450	72763528	14071174	0	-	0.448718	(0.42,0.455]	chr13	1102026	1	CDS	CDS:UTR3:EXON_MRNA	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr2	197380726	197380809	3106255	0	-	0.421687	(0.42,0.455]	chr2	274492	2	EXON_PSEUDO	EXON_PSEUDO	NPM1P46	ENSG00000213104.3	ENST00000399556.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr7	105267405	105267505	8972311	0	-	0.45	(0.42,0.455]	chr7	686727	605	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.66697	3.2592350000000003	3.8515	0.0190326	0.0119089	0.0958835	0.0686664
chr15	49127554	49127653	15267104	0	-	0.30303	(0.29,0.33]	chr15	1204405	50	UTR3	UTR3:EXON_MRNA:INTRON	COPS2	ENSG00000166200.15	ENST00000560240.5:ENST00000388901.10:ENST00000299259.10:ENST00000542928.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	43	2	1.71387	3.25914	4.80441	0.0355849	1.56681e-7	0.147262	8.23739e-6
chr3	31579904	31580000	3391920	0	+	0.40625	(0.39,0.42]	chr3	295020	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	3.0503	3.2591099999999997	3.46792	0.00570576	7.10972e-5	0.0424438	0.00136974
chr1	180112333	180112431	582452	0	+	0.387755	(0.36,0.39]	chr1	60512	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CEP350	ENSG00000135837.16	ENST00000367607.8:ENST00000429851.5:ENST00000417046.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.93136	3.258865	3.58637	0.00811967	5.84377e-4	0.0528637	0.00793559
chrX	52633554	52633652	18701815	0	+	0.377551	(0.36,0.39]	chrX	1595738	3	EXON_LNCRNA	EXON_LNCRNA	SSX8P	ENSG00000157965.12	ENST00000675258.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	22	2	2.93136	3.258865	3.58637	0.00811967	5.84377e-4	0.0528637	0.00793559
chr1	92229100	92229184	1166279	0	-	0.571429	(0.53,0.59]	chr1	115041	2	EXON_PSEUDO	EXON_PSEUDO	ACTBP12	ENSG00000233125.3	ENST00000435871.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	18	2	2.89916	3.2588600000000003	3.61856	0.0303021	0.00890406	0.129773	0.0565003
chr1	100078450	100078548	376722	0	+	0.530612	(0.53,0.59]	chr1	36515	1	CDS	CDS:UTR3:EXON_MRNA	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	18	2	2.89916	3.2588600000000003	3.61856	0.0303021	0.00890406	0.129773	0.0565003
chr1	113116286	113116361	413586	0	+	0.546667	(0.53,0.59]	chr1	40837	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	18	2	2.89916	3.2588600000000003	3.61856	0.0303021	0.00890406	0.129773	0.0565003
chr1	117623944	117624044	428410	0	+	0.55	(0.53,0.59]	chr1	42279	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TENT5C	ENSG00000183508.5	ENST00000369448.4	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.89916	3.2588600000000003	3.61856	0.0303021	0.00890406	0.129773	0.0565003
chr11	62595263	62595339	12409383	0	-	0.552632	(0.53,0.59]	chr11	961054	1	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5	protein_coding	protein_coding	protein_coding	protein_coding	1	18	2	2.89916	3.2588600000000003	3.61856	0.0303021	0.00890406	0.129773	0.0565003
chr6	28903098	28903195	7652683	0	-	0.546392	(0.53,0.59]	chr6	583182	2	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	18	2	2.89916	3.2588600000000003	3.61856	0.0303021	0.00890406	0.129773	0.0565003
chr11	63976320	63976394	11977990	0	+	0.594595	(0.59,1]	chr11	918584	1	UTR3	UTR3:EXON_MRNA:INTRON	AP000721.4:COX8A	ENSG00000256100.1:ENSG00000176340.4	ENST00000535431.1:ENST00000314133.4	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	2.20941	3.258805	4.3082	0.00355442	8.74343e-7	0.0300236	3.564e-5
chr12	57822409	57822508	13358223	0	-	0.555556	(0.53,0.59]	chr12	1053218	26	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.38191	3.2588	4.13569	0.00477439	2.50241e-5	0.0368489	5.82427e-4
chr7	42923324	42923406	8791635	0	-	0.390244	(0.39,0.42]	chr7	670208	1	CDS	CDS:UTR3:EXON_MRNA	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	3.20649	3.258795	3.3111	2.11919e-4	6.00874e-6	0.00357806	1.80766e-4
chr2	65018167	65018265	1853332	0	+	0.520408	(0.49,0.53]	chr2	175843	2	CDS	CDS:EXON_MRNA	SLC1A4	ENSG00000115902.11	ENST00000531327.5:ENST00000234256.4:ENST00000480594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.13501	3.258465	4.38192	0.0287874	0.00259709	0.128869	0.0229695
chr6	2890162	2890262	7570643	0	-	0.51	(0.49,0.53]	chr6	577662	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.13501	3.258465	4.38192	0.0287874	0.00259709	0.128869	0.0229695
chr5	80651356	80651454	6667609	0	-	0.5	(0.49,0.53]	chr5	514741	14	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	50	577	2	2.27455	3.2584350000000004	4.24232	2.09519e-5	1e-12	5.57049e-4	2.25522e-10
chr11	62571036	62571108	12409126	0	-	0.527778	(0.49,0.53]	chr11	960963	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000524420.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	155	2	2.93101	3.258435	3.58586	9.76044e-7	8.39333e-7	4.34504e-5	3.43655e-5
chr1	53803927	53804009	1025934	0	-	0.439024	(0.42,0.455]	chr1	106394	1	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.60504	3.25818	3.91132	0.00201537	3.67157e-6	0.0197874	1.1967e-4
chr19	8486315	8486405	17220834	0	+	0.566667	(0.53,0.59]	chr19	1417692	9	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000597081.1:ENST00000596295.1:ENST00000598999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.89427	3.2581550000000004	3.62204	4.3021e-4	3.98634e-4	0.00620274	0.00546791
chr7	77627286	77627383	8350214	0	+	0.371134	(0.36,0.39]	chr7	637034	7	CDS	CDS:EXON_MRNA	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000407343.3	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.18348	3.257945	3.33241	0.00310315	0.00193631	0.0263402	0.0192272
chr10	22536222	22536319	11411112	0	-	0.391753	(0.39,0.42]	chr10	869854	15	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.75826	3.257895	3.75753	0.00103132	2.04026e-4	0.0121443	0.00320361
chrX	65739893	65739990	18716364	0	+	0.556701	(0.53,0.59]	chrX	1596885	1	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	13	153	2	2.90496	3.257855	3.61075	1.38229e-5	1.05301e-7	3.94563e-4	5.82951e-6
chr2	26244596	26244672	2566198	0	-	0.618421	(0.59,1]	chr2	230647	1	UTR5	UTR5:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	92	2	2.77109	3.2577800000000003	3.74447	0.00331425	2.8028e-5	0.0285314	6.41211e-4
chr6	7313041	7313120	7587136	0	-	0.607595	(0.59,1]	chr6	578746	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5:ENST00000479365.5:ENST00000462112.1:ENST00000488834.5:ENST00000483409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.61822	3.25776	3.8973	0.00201173	2.15122e-4	0.019022	0.00360503
chr12	110340658	110340742	13085847	0	+	0.607143	(0.59,1]	chr12	1020526	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.57134	3.2577	3.94406	0.00259175	8.69349e-6	0.0237245	2.45289e-4
chrX	47214326	47214377	18686917	0	+	0.470588	(0.455,0.49]	chrX	1593275	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	3.24913	3.25768	3.26623	0.00239443	2.31662e-4	0.0225356	0.00354314
chr2	73240489	73240543	1885370	0	+	0.481481	(0.455,0.49]	chr2	178533	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCT7	ENSG00000135624.16	ENST00000471927.5:ENST00000469844.5:ENST00000473197.5:ENST00000492253.5:ENST00000540468.5:ENST00000539919.5:ENST00000461290.5:ENST00000258091.10:ENST00000398422.2:ENST00000399032.2:ENST00000409924.7:ENST00000480489.5:ENST00000473786.5:ENST00000482064.1:ENST00000626868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	3.13787	3.25764	3.37741	4.66183e-4	1.27402e-4	0.00616585	0.00241206
chr7	106091004	106091104	8977611	0	-	0.39	(0.36,0.39]	chr7	687014	6	UTR3	UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.61601	3.2575950000000002	3.89918	3.36245e-4	1.0624e-4	0.00474861	0.00205241
chr16	47699660	47699758	15646789	0	+	0.306122	(0.29,0.33]	chr16	1243530	4	UTR3	UTR3:EXON_MRNA	PHKB	ENSG00000102893.16	ENST00000566044.5:ENST00000299167.12:ENST00000323584.10:ENST00000566319.2:ENST00000564711.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.92065	3.25753	3.59441	0.0117842	3.40774e-5	0.0686664	7.50473e-4
chr4	98880637	98880735	5547679	0	-	0.27551	[0,0.29]	chr4	443076	15	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7	protein_coding	protein_coding	protein_coding	protein_coding	11	56	2	2.477	3.2574899999999998	4.03798	8.06409e-5	7.64187e-5	0.00160163	0.0015261300000000001
chr1	235738595	235738693	766972	0	+	0.438776	(0.42,0.455]	chr1	77403	7	EXON_PSEUDO	EXON_PSEUDO	LDHAP2	ENSG00000235674.2	ENST00000437325.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	59	2	2.8096	3.2573100000000004	3.70502	0.00253237	1.90816e-6	0.0233955	6.90654e-5
chr15	34495702	34495801	14860730	0	+	0.575758	(0.53,0.59]	chr15	1167067	14	EXON_PSEUDO	EXON_PSEUDO	FSCN1P1	ENSG00000261559.1	ENST00000568912.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	66	2	2.27113	3.257295	4.24346	0.0178853	3.43541e-7	0.0918323	1.60752e-5
chr8	100709731	100709789	9976010	0	-	0.241379	[0,0.29]	chr8	752677	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	36	2	2.27232	3.2572600000000005	4.2422	0.00296574	1.09166e-5	0.0263871	2.9609e-4
chr16	15036568	15036666	15562401	0	+	0.428571	(0.42,0.455]	chr16	1232374	4	UTR3	UTR3:EXON_MRNA:INTRON	PDXDC1	ENSG00000179889.19	ENST00000563679.5:ENST00000535621.6:ENST00000396410.9:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	2.8096	3.257235	3.70487	0.00253237	1.55091e-5	0.0233955	3.95473e-4
chr1	35602971	35603069	938333	0	-	0.55102	(0.53,0.59]	chr1	98692	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	94	2	2.87405	3.2571849999999998	3.64032	6.55401e-5	3.4163e-6	0.00139975	1.12474e-4
chr4	33968437	33968526	4787124	0	+	0.359551	(0.33,0.36]	chr4	394951	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-79E3.2:RP11-79E3.1	ENSG00000250723.7:ENSG00000239983.1	ENST00000505326.6:ENST00000506650.2:ENST00000515733.1:ENST00000482574.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	29	2	2.47163	3.25714	4.04265	0.0129725	3.90477e-5	0.0724783	8.43777e-4
chr10	91863989	91864088	11189577	0	+	0.282828	[0,0.29]	chr10	850705	11	UTR3	UTR3:EXON_MRNA	TNKS2	ENSG00000107854.6	ENST00000371627.5	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.40395	3.257125	4.1103	0.0210081	0.00493104	0.101116	0.0366648
chr12	22690271	22690369	12786306	0	+	0.234694	[0,0.29]	chr12	993067	55	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.40395	3.257125	4.1103	0.0210081	0.00493104	0.101116	0.0366648
chr16	75628640	75628712	16039074	0	-	0.5	(0.49,0.53]	chr16	1288285	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000569298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	63	2	2.62694	3.257125	3.88731	6.60942e-4	4.40111e-6	0.00866622	1.3969e-4
chr1	219983188	219983258	1510819	0	-	0.457143	(0.455,0.49]	chr1	151004	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000485821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	2.26324	3.2571200000000005	4.251	0.00868189	2.66207e-7	0.0558093	1.29082e-5
chr16	24154770	24154857	15598622	0	+	0.632184	(0.59,1]	chr16	1236870	2	CDS	CDS:EXON_MRNA	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000472066.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.39747	3.257095	4.11672	0.0430221	0.0222273	0.161091	0.105595
chr3	17160864	17160962	4059129	0	-	0.591837	(0.59,1]	chr3	341127	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.39747	3.257095	4.11672	0.0430221	0.0222273	0.161091	0.105595
chr5	179800540	179800597	7002392	0	-	0.614035	(0.59,1]	chr5	536341	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MGAT4B	ENSG00000161013.17	ENST00000337755.9:ENST00000518778.5:ENST00000292591.12:ENST00000519836.5:ENST00000518980.5:ENST00000523382.5:ENST00000520875.5:ENST00000518867.5:ENST00000518702.5:ENST00000520822.5:ENST00000523108.5:ENST00000520918.5:ENST00000521305.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	24	2	2.39747	3.257095	4.11672	0.0430221	0.0222273	0.161091	0.105595
chrX	153700669	153700758	19273609	0	-	0.595506	(0.59,1]	chrX	1637347	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.39747	3.257095	4.11672	0.0430221	0.0222273	0.161091	0.105595
chr1	161673059	161673144	501560	0	+	0.447059	(0.42,0.455]	chr1	54362	2	CDS	CDS:EXON_MRNA	FCGR2B	ENSG00000072694.21	ENST00000236937.13:ENST00000358671.9:ENST00000367961.8:ENST00000480308.5:ENST00000485778.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.8096	3.2570550000000003	3.70451	0.00253237	2.72131e-4	0.0233955	0.00404713
chr19	28614929	28615029	17280944	0	+	0.48	(0.455,0.49]	chr19	1428124	26	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1	lncRNA	lncRNA	lncRNA	lncRNA	15	137	2	3.23575	3.25698	3.27821	1.4015e-6	2.45435e-7	5.31304e-5	1.35788e-5
chr3	13377508	13377562	4046836	0	-	0.62963	(0.59,1]	chr3	339684	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	152	2	2.63214	3.256625	3.88111	0.005622	5.23687e-7	0.0421873	2.30543e-5
chr1	31632494	31632566	919048	0	-	0.569444	(0.53,0.59]	chr1	96304	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PEF1	ENSG00000162517.13	ENST00000373703.5:ENST00000461006.5:ENST00000478502.5:ENST00000489164.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.515	3.256595	3.99819	0.0292633	0.0111308	0.129773	0.0665375
chr1	99704658	99704757	1197295	0	-	0.575758	(0.53,0.59]	chr1	116831	8	UTR3	UTR3:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.515	3.256595	3.99819	0.0292633	0.0111308	0.129773	0.0665375
chr1	111443322	111443394	1224933	0	-	0.555556	(0.53,0.59]	chr1	119950	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WDR77	ENSG00000116455.14	ENST00000235090.10:ENST00000449340.1:ENST00000497278.5:ENST00000459665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.515	3.256595	3.99819	0.0292633	0.0111308	0.129773	0.0665375
chr11	60922754	60922853	11967056	0	+	0.535354	(0.53,0.59]	chr11	916468	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1:ENST00000540280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.515	3.256595	3.99819	0.0292633	0.0111308	0.129773	0.0665375
chr11	108009077	108009167	12123785	0	+	0.588889	(0.53,0.59]	chr11	933309	3	UTR5	UTR5:EXON_MRNA	CUL5	ENSG00000166266.14	ENST00000393094.7:ENST00000532064.5:ENST00000526303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.515	3.256595	3.99819	0.0292633	0.0111308	0.129773	0.0665375
chr17	80339200	80339296	16372932	0	+	0.583333	(0.53,0.59]	chr17	1330731	1	CDS	CDS:EXON_MRNA	RNF213	ENSG00000173821.19	ENST00000508628.6:ENST00000582970.5:ENST00000571908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.515	3.256595	3.99819	0.0292633	0.0111308	0.129773	0.0665375
chr1	61426464	61426556	231476	0	+	0.543478	(0.53,0.59]	chr1	27298	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr1	226888828	226888901	739578	0	+	0.561644	(0.53,0.59]	chr1	74606	1	CDS	CDS:UTR3:EXON_MRNA	RP5-1087E8.6:PSEN2	ENSG00000288674.1:ENSG00000143801.18	ENST00000366779.6:ENST00000676884.1:ENST00000524196.6:ENST00000676888.1:ENST00000678835.1:ENST00000677599.1:ENST00000678233.1:ENST00000678820.1:ENST00000676945.1:ENST00000679098.1:ENST00000678655.1:ENST00000676907.1:ENST00000678706.1:ENST00000677529.1:ENST00000678320.1:ENST00000677748.1:ENST00000677414.1:ENST00000678784.1:ENST00000676840.1:ENST00000679088.1:ENST00000676747.1:ENST00000678021.1:ENST00000366783.8:ENST00000677880.1:ENST00000422240.6:ENST00000677596.1:ENST00000676467.1:ENST00000678776.1:ENST00000460775.5:ENST00000366782.6:ENST00000626989.3:ENST00000677065.1:ENST00000472139.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr1	230838972	230839070	1546535	0	-	0.571429	(0.53,0.59]	chr1	154853	20	UTR3	UTR3:EXON_MRNA	C1orf198	ENSG00000119280.17	ENST00000470540.5:ENST00000366663.10:ENST00000427697.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr12	49026276	49026371	13323224	0	-	0.589474	(0.53,0.59]	chr12	1045421	2	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1:ENST00000684428.1:ENST00000684755.1:ENST00000683863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr16	16275316	16275379	15569255	0	+	0.571429	(0.53,0.59]	chr16	1233025	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr16	89902745	89902842	15812214	0	+	0.556701	(0.53,0.59]	chr16	1259207	16	INTRON	INTRON	TCF25	ENSG00000141002.20	ENST00000640279.1:ENST00000263347.11:ENST00000263346.13:ENST00000562256.5:ENST00000568409.5:ENST00000570116.6:ENST00000562193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr17	65639	65736	16388651	0	-	0.556701	(0.53,0.59]	chr17	1333302	17	EXON_LNCRNA	EXON_LNCRNA	LINC02887	ENSG00000280279.1	ENST00000623180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr17	50134433	50134533	16584277	0	-	0.59	(0.53,0.59]	chr17	1362799	8	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr21	6492130	6492168	18155185	0	-	0.552632	(0.53,0.59]	chr21	1541468	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	U2AF1L5	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000639996.1:ENST00000620065.4:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1:ENST00000637031.1:ENST00000636177.1:ENST00000636403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr3	198040648	198040747	3993848	0	+	0.545455	(0.53,0.59]	chr3	336723	21	UTR3	UTR3:EXON_MRNA	LMLN	ENSG00000185621.11	ENST00000330198.8:ENST00000451139.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr7	100430958	100431051	8427129	0	+	0.548387	(0.53,0.59]	chr7	643004	10	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MEPCE	ENSG00000146834.14	ENST00000497759.1:ENST00000414441.5:ENST00000479201.1:ENST00000310512.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.35511	3.25658	4.15805	0.0445399	0.00680952	0.172163	0.0468196
chr10	27145508	27145590	11423644	0	-	0.378049	(0.36,0.39]	chr10	870985	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.76778	3.25651	3.74524	0.00365703	1.17259e-5	0.0307238	3.12994e-4
chr16	24219366	24219465	15599281	0	+	0.454545	(0.42,0.455]	chr16	1236920	47	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.11785	3.256265	4.39468	0.0154862	0.00240483	0.0836691	0.0217482
chr3	153164242	153164342	3818942	0	+	0.54	(0.53,0.59]	chr3	325742	11	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	2.70623	3.256165	3.8061	1.88417e-4	8.37944e-6	0.0032588	2.38248e-4
chr15	42531625	42531721	14892400	0	+	0.385417	(0.36,0.39]	chr15	1170513	2	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5:ENST00000563333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	56	2	2.83519	3.25605	3.67691	8.47223e-5	2.38454e-5	0.00159231	6.18922e-4
chr2	47160181	47160280	2631438	0	-	0.292929	(0.29,0.33]	chr2	236916	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	116	2	2.76193	3.2560450000000003	3.75016	1.6187e-5	7.06467e-9	4.51406e-4	5.74665e-7
chr3	177096269	177096368	4594225	0	-	0.373737	(0.36,0.39]	chr3	379745	47	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	39	2	2.63115	3.25593	3.88071	0.0245975	4.48476e-6	0.114841	1.41623e-4
chr14	55229495	55229588	14298332	0	+	0.569892	(0.53,0.59]	chr14	1117596	4	EXON_PSEUDO	EXON_PSEUDO	RP11-665C16.9	ENSG00000279392.1	ENST00000623123.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	52	2	2.0693	3.255925	4.44255	0.0160468	3.41603e-6	0.0860154	1.12474e-4
chr7	103557067	103557159	8963839	0	-	0.423913	(0.42,0.455]	chr7	686196	2	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	61	2	2.22933	3.255875	4.28242	0.0102262	2.10422e-7	0.062872	1.06041e-5
chr10	68984087	68984185	11093418	0	+	0.387755	(0.36,0.39]	chr10	843302	14	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.08671	3.25587	4.42503	0.01635	0.00133228	0.0867615	0.0144372
chr11	119300175	119300273	12163750	0	+	0.367347	(0.36,0.39]	chr11	938080	5	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.08671	3.25587	4.42503	0.01635	0.00133228	0.0867615	0.0144372
chr1	160293385	160293463	1328708	0	-	0.551282	(0.53,0.59]	chr1	135989	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.0728	3.255715	4.43863	0.0086901	0.00254763	0.0559355	0.0233955
chr1	37692904	37692968	142582	0	+	0.453125	(0.42,0.455]	chr1	17796	1	CDS	CDS:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.86513	3.2556849999999997	4.64624	0.0357107	8.75333e-4	0.147298	0.0101169
chr3	129818931	129818982	3732208	0	+	0.431373	(0.42,0.455]	chr3	319350	1	EXON_SMALL	EXON_SMALL	RNY3P13	ENSG00000202412.1	ENST00000365542.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	3	22	2	1.86513	3.2556849999999997	4.64624	0.0357107	8.75333e-4	0.147298	0.0101169
chr19	10133425	10133505	17457737	0	-	0.275	[0,0.29]	chr19	1460411	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000586588.5:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000591798.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000589351.6:ENST00000678957.1:ENST00000678107.1:ENST00000678647.1:ENST00000677038.1:ENST00000676610.1:ENST00000678851.1:ENST00000588913.5:ENST00000678804.1:ENST00000679313.1:ENST00000677135.1:ENST00000677946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	1.93716	3.2556599999999998	4.57416	0.0548436	6.75561e-4	0.189511	0.00873562
chr2	68042692	68042790	2715214	0	-	0.255102	[0,0.29]	chr2	241700	17	UTR3	UTR3:EXON_MRNA	C1D	ENSG00000197223.12	ENST00000410067.8:ENST00000355848.7:ENST00000407324.5:ENST00000409302.1:ENST00000479484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	1.93716	3.2556599999999998	4.57416	0.0548436	6.75561e-4	0.189511	0.00873562
chr6	31839616	31839691	7116812	0	+	0.44	(0.42,0.455]	chr6	546234	2	EXON_LNCRNA	EXON_LNCRNA	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	17	163	2	2.97964	3.2556599999999998	3.53168	3.98468e-6	1.85329e-8	1.40542e-4	1.32741e-6
chr3	196075158	196075225	4663422	0	-	0.38806	(0.36,0.39]	chr3	385646	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	44	2	1.7286	3.25557	4.78254	0.0227476	1.93842e-7	0.105293	1.10775e-5
chr10	17714680	17714780	10940192	0	+	0.51	(0.49,0.53]	chr10	833146	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	1.73918	3.2555650000000003	4.77195	0.0213952	2.57118e-7	0.102813	1.25706e-5
chr18	197615	197696	16716059	0	+	0.358025	(0.33,0.36]	chr18	1379119	1	CDS	CDS:UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.68374	3.2553099999999997	3.82688	0.00194492	6.67671e-6	0.0193053	1.97539e-4
chr12	57602655	57602750	12903764	0	+	0.463158	(0.455,0.49]	chr12	1005691	12	UTR3	UTR3:EXON_MRNA	PIP4K2C	ENSG00000166908.18	ENST00000354947.10:ENST00000540759.6	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	1.8708	3.25529	4.63978	0.0324007	6.94032e-4	0.134751	0.00876781
chr5	163491358	163491455	6343787	0	+	0.402062	(0.39,0.42]	chr5	494110	3	UTR3	UTR3:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000353866.7:ENST00000393915.9:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	3.05826	3.25519	3.45212	2.0864e-5	8.59055e-7	5.54939e-4	3.51359e-5
chr4	26434541	26434640	4766716	0	+	0.333333	(0.33,0.36]	chr4	394281	37	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.78095	3.254925	3.7289	0.00388614	1.33223e-5	0.0322851	3.48915e-4
chr1	154583443	154583541	1303551	0	-	0.459184	(0.455,0.49]	chr1	131361	19	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.50904	3.2548649999999997	4.00069	0.0310515	5.13615e-5	0.131262	0.00104999
chr1	161210650	161210710	499158	0	+	0.466667	(0.455,0.49]	chr1	54029	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.50904	3.2548649999999997	4.00069	0.0310515	5.13615e-5	0.131262	0.00104999
chr11	247278	247363	11756083	0	+	0.4	(0.39,0.42]	chr11	897590	1	CDS	CDS:UTR3:EXON_MRNA	PSMD13	ENSG00000185627.18	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.74829	3.2548500000000002	3.76141	8.96426e-4	2.14058e-4	0.0102618	0.00359478
chr5	176496574	176496663	6402568	0	+	0.449438	(0.42,0.455]	chr5	497363	2	CDS	CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7:ENST00000504983.1:ENST00000513627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.36247	3.25476	4.14705	0.0462889	2.1071e-5	0.176878	5.06044e-4
chr7	141743560	141743630	8575594	0	+	0.528571	(0.49,0.53]	chr7	654295	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	48	2	2.78794	3.25454	3.72114	0.00251838	1.38104e-5	0.0226599	3.94563e-4
chr8	47971340	47971404	9316236	0	+	0.5625	(0.53,0.59]	chr8	713573	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000517709.1:ENST00000648554.1:ENST00000519470.1:ENST00000523853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	33	2	2.20093	3.254345	4.30776	0.00507963	0.00407289	0.037544	0.0324137
chr2	43912431	43912484	2623175	0	-	0.301887	(0.29,0.33]	chr2	236135	1	CDS	CDS:UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683528.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	3.13212	3.25427	3.37642	0.00551048	5.24968e-6	0.0414592	1.61112e-4
chr20	1370028	1370072	17875170	0	-	0.545455	(0.53,0.59]	chr20	1512312	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000474726.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.34461	3.25422	4.16383	0.0457008	0.00659193	0.168044	0.0454205
chr9	120857344	120857444	10834148	0	-	0.58	(0.53,0.59]	chr9	820523	18	UTR3	UTR3:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.34461	3.25422	4.16383	0.0457008	0.00659193	0.168044	0.0454205
chr1	19356692	19356751	877952	0	-	0.576271	(0.53,0.59]	chr1	90679	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000457768.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr1	42181916	42181970	964228	0	-	0.537037	(0.53,0.59]	chr1	101511	1	CDS	CDS:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr1	70221736	70221787	280585	0	+	0.54902	(0.53,0.59]	chr1	30144	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRSF11	ENSG00000116754.13	ENST00000370951.5:ENST00000463877.1:ENST00000370950.7:ENST00000475204.5:ENST00000395136.6:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr19	1800258	1800353	17420166	0	-	0.578947	(0.53,0.59]	chr19	1452829	1	CDS	CDS:UTR3:EXON_MRNA	ATP8B3	ENSG00000130270.16	ENST00000310127.10:ENST00000531925.5:ENST00000525591.5:ENST00000526092.6:ENST00000533107.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr2	130153042	130153106	2873825	0	-	0.546875	(0.53,0.59]	chr2	257056	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000482171.5:ENST00000491128.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000457039.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr22	19969989	19970083	18435422	0	-	0.585106	(0.53,0.59]	chr22	1571138	2	UTR3	UTR3:EXON_MRNA	ARVCF	ENSG00000099889.14	ENST00000263207.8:ENST00000495096.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr3	195787823	195787922	4661145	0	-	0.585859	(0.53,0.59]	chr3	385270	92	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr7	4759133	4759217	8109546	0	+	0.583333	(0.53,0.59]	chr7	619641	2	CDS	CDS:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5:ENST00000496023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr8	22614387	22614437	9226956	0	+	0.54	(0.53,0.59]	chr8	706084	1	CDS	CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR2	ENSG00000158941.16	ENST00000308511.8:ENST00000389279.7:ENST00000520861.5:ENST00000522599.5:ENST00000521020.1:ENST00000520738.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chrX	55006880	55006971	18705294	0	+	0.538462	(0.53,0.59]	chrX	1596297	5	CDS	CDS:EXON_MRNA	APEX2	ENSG00000169188.5	ENST00000374987.4	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.50447	3.2542	4.00393	0.0301162	0.0108084	0.130016	0.064368
chr7	73573363	73573463	8854601	0	-	0.61	(0.59,1]	chr7	676044	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TBL2	ENSG00000106638.17	ENST00000305632.11:ENST00000450285.5:ENST00000424598.5:ENST00000459913.5:ENST00000610724.4:ENST00000417008.5:ENST00000432538.5:ENST00000433464.5:ENST00000426966.5:ENST00000452475.5:ENST00000437521.5:ENST00000435792.5:ENST00000452125.5:ENST00000476136.5:ENST00000479892.5:ENST00000465279.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	3.01792	3.25406	3.4902	0.00130379	0.00111911	0.0142445	0.0121894
chr21	33903590	33903656	18224255	0	-	0.424242	(0.42,0.455]	chr21	1546638	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000417181.5:ENST00000429064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	54	2	3.08182	3.25393	3.42604	6.80627e-4	1.46189e-5	0.00876781	3.76794e-4
chr18	3256077	3256156	16729742	0	+	0.329114	(0.29,0.33]	chr18	1380105	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000536605.1:ENST00000580887.5:ENST00000578038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	157	2	3.05463	3.253845	3.45306	2.21205e-6	4.14529e-9	8.61368e-5	3.62098e-7
chr20	5119577	5119637	17887834	0	-	0.65	(0.59,1]	chr20	1514097	1	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.24397	3.253755	4.26354	0.0206682	0.0134233	0.0997234	0.0743429
chr4	102315667	102315724	5561181	0	-	0.473684	(0.455,0.49]	chr4	444112	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1:ENST00000510255.5:ENST00000514000.5:ENST00000512657.5:ENST00000502903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.85172	3.253585	3.65545	0.010864	3.50134e-4	0.0643837	0.0049086
chr2	65253727	65253795	1854222	0	+	0.455882	(0.455,0.49]	chr2	175958	1	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	3.0141	3.25358	3.49306	9.3076e-4	6.07633e-5	0.0111917	0.00121305
chr19	49340250	49340328	17369733	0	+	0.551282	(0.53,0.59]	chr19	1442768	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000426897.6:ENST00000595725.5:ENST00000323906.9:ENST00000597852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	3.1234	3.253435	3.38347	0.00390623	0.00132446	0.0322851	0.0138834
chr2	215326899	215326978	2377048	0	+	0.544304	(0.53,0.59]	chr2	213526	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	3.1234	3.253435	3.38347	0.00390623	0.00132446	0.0322851	0.0138834
chr22	41527946	41528022	18381084	0	+	0.565789	(0.53,0.59]	chr22	1564631	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	3.1234	3.253435	3.38347	0.00390623	0.00132446	0.0322851	0.0138834
chr8	140530944	140531044	10132152	0	-	0.55	(0.53,0.59]	chr8	760954	109	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.1234	3.253435	3.38347	0.00390623	0.00132446	0.0322851	0.0138834
chr9	33953284	33953376	10633760	0	-	0.543478	(0.53,0.59]	chr9	803876	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	3.1234	3.253435	3.38347	0.00390623	0.00132446	0.0322851	0.0138834
chr8	47794359	47794430	9815687	0	-	0.464789	(0.455,0.49]	chr8	742517	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.33278	3.253425	4.17407	0.00314029	1.754e-5	0.0276877	4.38078e-4
chr10	42796946	42797041	11018305	0	+	0.463158	(0.455,0.49]	chr10	838192	6	CDS	CDS:EXON_MRNA	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr14	22771098	22771180	14174782	0	+	0.463415	(0.455,0.49]	chr14	1110334	2	CDS	CDS:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr15	68211262	68211318	15357821	0	-	0.464286	(0.455,0.49]	chr15	1212957	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-315D16.2:CLN6	ENSG00000260007.3:ENSG00000128973.13	ENST00000637888.1:ENST00000562767.2:ENST00000637054.1:ENST00000646164.1:ENST00000249806.11:ENST00000638076.1:ENST00000636964.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5:ENST00000538696.5:ENST00000635747.1:ENST00000637494.1:ENST00000638144.1:ENST00000636212.1:ENST00000636674.1:ENST00000637823.1:ENST00000637450.1:ENST00000637667.1:ENST00000564752.1:ENST00000563917.2:ENST00000636314.1:ENST00000637223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr16	48348099	48348194	15649773	0	+	0.463158	(0.455,0.49]	chr16	1243672	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000566755.5:ENST00000565867.2:ENST00000564259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr16	74453266	74453334	16031000	0	-	0.485294	(0.455,0.49]	chr16	1287253	1	CDS	CDS:UTR3:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000561942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr3	12574862	12574934	3314702	0	+	0.486111	(0.455,0.49]	chr3	291628	2	CDS	CDS:UTR3:EXON_MRNA	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr3	196936254	196936349	4666626	0	-	0.473684	(0.455,0.49]	chr3	386083	10	UTR3	UTR3:EXON_MRNA:INTRON	NCBP2	ENSG00000114503.11	ENST00000467803.1:ENST00000321256.10:ENST00000447325.5:ENST00000463783.1:ENST00000428425.1:ENST00000427641.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.69344	3.253095	3.81275	0.0176068	0.0138827	0.0925619	0.0760883
chr2	28781737	28781791	1702708	0	+	0.296296	(0.29,0.33]	chr2	167011	1	CDS	CDS:EXON_MRNA	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000418910.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.45373	3.2527500000000003	4.05177	0.0156405	3.72769e-5	0.084273700000000007	8.08834e-4
chr22	38494715	38494802	18509714	0	-	0.494253	(0.49,0.53]	chr22	1579984	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000497196.5:ENST00000477112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	3.11892	3.252695	3.38647	0.00398244	1.15525e-4	0.0322851	0.00204405
chr17	76564863	76564960	16359198	0	+	0.484536	(0.455,0.49]	chr17	1328581	19	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000667091.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	8	77	2	2.73862	3.2526349999999997	3.76665	1.62714e-4	1.171e-6	0.00290162	4.57081e-5
chr16	92660	92725	15815372	0	-	0.615385	(0.59,1]	chr16	1259929	2	CDS	CDS:UTR3:EXON_MRNA	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.9891200000000002	3.2526	3.51608	0.00823979	0.00108676	0.0540283	0.0118659
chr5	95755413	95755500	6108094	0	+	0.425287	(0.42,0.455]	chr5	478227	1	CDS	CDS:UTR3:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	2.97857	3.25258	3.52659	6.87022e-4	2.50668e-4	0.00876781	0.00378275
chr1	156136213	156136297	486138	0	+	0.690476	(0.59,1]	chr1	51290	1	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3:ENST00000459904.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	174	2	2.81725	3.252445	3.68764	4.42534e-5	4.01305e-5	0.00102453	8.63235e-4
chr7	158760057	158760147	9159580	0	-	0.522222	(0.49,0.53]	chr7	699747	1	CDS	CDS:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.38204	3.252335	4.12263	0.00591451	0.0049129	0.0427941	0.0366648
chr1	245771025	245771124	1591975	0	-	0.30303	(0.29,0.33]	chr1	158491	65	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000482592.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.63813	3.25232	3.86651	0.0112245	0.00803229	0.0665375	0.0528968
chr1	64833989	64834084	1073007	0	-	0.315789	(0.29,0.33]	chr1	109587	9	UTR3	UTR3:EXON_MRNA	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000672574.1:ENST00000673246.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	3.18804	3.252285	3.31653	0.00261621	3.92193e-4	0.0238929	0.00539186
chrX	55025900	55026000	19084732	0	-	0.59	(0.53,0.59]	chrX	1623783	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.57867	3.2522	3.92573	0.00198261	8.62301e-5	0.0195088	0.00160749
chr14	21234093	21234193	14520761	0	-	0.47	(0.455,0.49]	chr14	1137269	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	86	2	3.11555	3.2521649999999998	3.38878	1.18691e-5	4.61306e-6	3.16198e-4	1.60084e-4
chr2	128190533	128190632	2060517	0	+	0.323232	(0.29,0.33]	chr2	193397	9	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	3.18804	3.25209	3.31614	3.92193e-4	3.2999e-4	0.00539186	0.00504024
chr3	180949226	180949284	3933458	0	+	0.413793	(0.39,0.42]	chr3	330692	1	CDS	CDS:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000469882.5:ENST00000465551.5:ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000484958.5:ENST00000480918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.01081	3.252025	4.49324	0.0207537	0.00108192	0.100574	0.0124943
chr17	41758792	41758870	16543019	0	-	0.653846	(0.59,1]	chr17	1356279	2	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000585793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	1.87297	3.252015	4.63106	0.0308113	0.00537945	0.130016	0.0406564
chr17	59683178	59683262	16295477	0	+	0.404762	(0.39,0.42]	chr17	1321736	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	12	104	2	3.17127	3.25195	3.33263	2.46945e-6	1.56017e-6	9.43135e-5	5.81346e-5
chr2	157300756	157300837	2152538	0	+	0.567901	(0.53,0.59]	chr2	198607	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5:ENST00000463418.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.45844	3.2518599999999998	4.04528	0.00930921	4.28524e-5	0.0587563	9.98851e-4
chr3	37040239	37040294	3411024	0	+	0.490909	(0.49,0.53]	chr3	296332	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	1.99044	3.25178	4.51312	0.0435903	0.00156636	0.170594	0.0156889
chr1	183626936	183627035	1404927	0	-	0.383838	(0.36,0.39]	chr1	142115	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	2.18029	3.2514700000000003	4.32265	0.0077769	6.3224e-6	0.0517139	1.88366e-4
chr2	9441896	9441976	1625837	0	+	0.4125	(0.39,0.42]	chr2	161250	2	CDS	CDS:EXON_MRNA	CPSF3	ENSG00000119203.14	ENST00000238112.8:ENST00000460593.1:ENST00000489629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	2.67296	3.2513449999999997	3.82973	0.00159022	1.3728e-4	0.0168452	0.00232973
chr3	184243858	184243927	4622935	0	-	0.608696	(0.59,1]	chr3	381725	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000463495.5:ENST00000462735.6:ENST00000423996.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.53147	3.251325	3.97118	0.00807544	1.3379e-4	0.0531324	0.00229039
chr14	102082277	102082360	14792134	0	-	0.445783	(0.42,0.455]	chr14	1159065	3	CDS	CDS:EXON_MRNA	HSP90AA1	ENSG00000080824.19	ENST00000216281.13:ENST00000334701.11	protein_coding	protein_coding	protein_coding	protein_coding	13	119	2	3.08657	3.251255	3.41594	3.17074e-6	4.19305e-7	1.05868e-4	2.13094e-5
chr11	126263328	126263426	12645137	0	-	0.397959	(0.39,0.42]	chr11	981826	5	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	2.74103	3.25122	3.76141	2.14058e-4	7.62098e-5	0.00359478	0.00145122
chr5	72910312	72910411	6029406	0	+	0.313131	(0.29,0.33]	chr5	472817	17	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	3.02243	3.25122	3.48001	0.00126219	9.33835e-4	0.013837	0.0105624
chr1	19197669	19197740	876957	0	-	0.43662	(0.42,0.455]	chr1	90390	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	3.20518	3.2511900000000002	3.2972	1.93851e-4	6.88593e-5	0.00307904	0.00146004
chr8	18057051	18057147	9732801	0	-	0.291667	(0.29,0.33]	chr8	736286	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.62025	3.25116	3.88207	0.00573581	1.56259e-4	0.0417422	0.00282486
chr10	110285581	110285680	11250199	0	+	0.444444	(0.42,0.455]	chr10	857033	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000361248.8:ENST00000239007.11:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000652463.1:ENST00000650810.1:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000652323.1:ENST00000651112.1:ENST00000485566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.26097	3.25115	4.24133	0.00404179	0.00326918	0.032143	0.0282494
chr9	37132438	37132538	10252964	0	+	0.34	(0.33,0.36]	chr9	771594	51	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.05855	3.2510399999999997	4.44353	0.018622	3.20943e-6	0.0952021	1.17669e-4
chr3	185417889	185417987	4625648	0	-	0.438776	(0.42,0.455]	chr3	382004	5	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	73	2	3.16223	3.250965	3.3397	4.45084e-4	2.17429e-6	0.00633715	7.68018e-5
chr11	61804684	61804710	12405956	0	-	0.461538	(0.455,0.49]	chr11	960601	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	164	2	2.4038	3.25056	4.09732	7.00614e-5	7.73319e-10	0.00148162	8.33221e-8
chr3	149027389	149027489	3801969	0	+	0.36	(0.33,0.36]	chr3	324589	5	UTR3	UTR3:EXON_MRNA	GYG1	ENSG00000163754.18	ENST00000627418.2:ENST00000296048.10:ENST00000345003.9:ENST00000484197.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.97842	3.25054	4.52266	0.0469469	8.34989e-4	0.171977	0.0102956
chr5	140117443	140117542	6252268	0	+	0.343434	(0.33,0.36]	chr5	487304	24	UTR3	UTR3:EXON_MRNA	PURA	ENSG00000185129.8	ENST00000331327.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.97842	3.25054	4.52266	0.0469469	8.34989e-4	0.171977	0.0102956
chr6	42625751	42625851	7151800	0	+	0.35	(0.33,0.36]	chr6	551889	55	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.97842	3.25054	4.52266	0.0469469	8.34989e-4	0.171977	0.0102956
chr1	21852918	21852994	890957	0	-	0.763158	(0.59,1]	chr1	92388	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	133	2	2.51604	3.25047	3.9849	8.77631e-4	6.78787e-6	0.0107201	2.00658e-4
chr6	30590974	30591065	7111581	0	+	0.505495	(0.49,0.53]	chr6	544897	4	UTR3	UTR3:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	3.16986	3.250425	3.33099	3.95698e-4	1.59567e-4	0.00587341	0.00263091
chr15	45061148	45061226	14901049	0	+	0.525641	(0.49,0.53]	chr15	1171843	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.21702	3.25017	4.28332	0.00959574	0.00338762	0.0603269	0.0288632
chrX	124102361	124102459	18852603	0	+	0.295918	(0.29,0.33]	chrX	1606330	19	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	80	2	3.18659	3.25014	3.31369	4.14759e-5	4.47696e-7	9.75037e-4	2.01514e-5
chr1	201520065	201520163	658271	0	+	0.489796	(0.455,0.49]	chr1	66002	15	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-134G8.7:RPS10P7	ENSG00000224536.2:ENSG00000223396.4	ENST00000454651.2:ENST00000441932.1:ENST00000648727.1:ENST00000482594.2	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	7	70	2	2.82961	3.2500150000000003	3.67042	2.1638e-4	2.46218e-6	0.00361336	8.56868e-5
chr11	111883135	111883202	12134544	0	+	0.328358	(0.29,0.33]	chr11	934577	1	CDS	CDS:EXON_MRNA:INTRON	C11orf1	ENSG00000137720.8	ENST00000528125.5:ENST00000260276.8:ENST00000530214.5:ENST00000530799.5:ENST00000529270.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.24226	3.24943	4.2566	0.0306054	0.00303129	0.130226	0.0257942
chr2	187464422	187464518	3070143	0	-	0.3125	(0.29,0.33]	chr2	271827	3	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.24226	3.24943	4.2566	0.0306054	0.00303129	0.130226	0.0257942
chr3	101565801	101565893	3637898	0	+	0.293478	(0.29,0.33]	chr3	311905	11	CDS	CDS:EXON_MRNA	TRMT10C	ENSG00000174173.7	ENST00000309922.7	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.24226	3.24943	4.2566	0.0306054	0.00303129	0.130226	0.0257942
chr11	43318639	43318720	11919751	0	+	0.395062	(0.39,0.42]	chr11	910808	1	CDS	CDS:EXON_MRNA:INTRON	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000530300.1:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7:ENST00000534600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.55844	3.2492	3.93996	0.0263695	0.00841622	0.117164	0.054565
chr9	33280859	33280952	10234393	0	+	0.290323	(0.29,0.33]	chr9	769385	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHMP5	ENSG00000086065.14	ENST00000419016.6:ENST00000223500.9:ENST00000487080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.50329	3.24891	3.99453	0.00142661	8.03892e-5	0.0146595	0.00167226
chr17	80393897	80393996	16373536	0	+	0.353535	(0.33,0.36]	chr17	1330943	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF213	ENSG00000173821.19	ENST00000508628.6:ENST00000582970.5:ENST00000411702.7:ENST00000427003.7:ENST00000560083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	15	2	2.47163	3.2488300000000003	4.02603	0.0129725	0.0071776	0.0724783	0.048188
chr6	44148791	44148868	7160976	0	+	0.584416	(0.53,0.59]	chr6	553584	1	CDS	CDS:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000534326.5:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	3.21941	3.24872	3.2780300000000002	0.00266171	4.08373e-5	0.0240332	8.76332e-4
chr3	49028721	49028806	4171723	0	-	0.482353	(0.455,0.49]	chr3	350242	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1:ENST00000485500.1:ENST00000496837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	97	2	2.3271	3.2485800000000005	4.17006	4.2342e-4	4.03133e-8	0.00613535	2.56372e-6
chr20	3927506	3927605	17883199	0	-	0.444444	(0.42,0.455]	chr20	1513717	3	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.43733	3.248435	4.05954	0.0103896	0.00617886	0.0640167	0.0439741
chr5	82009798	82009896	6672951	0	-	0.44898	(0.42,0.455]	chr5	515054	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP11	ENSG00000251495.1	ENST00000510729.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.43733	3.248435	4.05954	0.0103896	0.00617886	0.0640167	0.0439741
chr16	87738778	87738877	16071805	0	-	0.575758	(0.53,0.59]	chr16	1291156	78	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	19	2	3.1234	3.2483500000000003	3.3733	0.0529193	0.00390623	0.18423900000000001	0.0322851
chr19	49499535	49499635	17370827	0	+	0.59	(0.53,0.59]	chr19	1443168	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000270625.7:ENST00000594493.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	596	2	2.87494	3.2481850000000003	3.62143	2.52775e-7	9.87654e-11	1.39088e-5	1.34705e-8
chr12	112013565	112013609	13094161	0	+	0.568182	(0.53,0.59]	chr12	1021450	1	CDS	CDS:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000553161.1:ENST00000552052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	35	2	2.515	3.248075	3.98115	0.0292633	6.28226e-5	0.129773	0.00124286
chr2	135710058	135710144	2082805	0	+	0.581395	(0.53,0.59]	chr2	195372	1	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000445855.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.05734	3.247985	4.43863	0.0167029	0.00254763	0.0883198	0.0233955
chr1	44766887	44766949	174068	0	+	0.548387	(0.53,0.59]	chr1	22402	2	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.504	3.247955	3.99191	0.00279409	5.86351e-5	0.0241702	0.00129243
chr17	75778883	75778963	16684897	0	-	0.6125	(0.59,1]	chr17	1373463	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	H3-3B	ENSG00000132475.10	ENST00000254810.8:ENST00000593254.1:ENST00000586518.1:ENST00000592643.5:ENST00000591890.5:ENST00000589949.1:ENST00000587560.5:ENST00000589599.5:ENST00000586607.5:ENST00000586270.5:ENST00000587171.1:ENST00000589417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	100	2	2.14463	3.24742	4.35021	0.00445434	2.10898e-5	0.0340903	5.6023e-4
chr1	196673070	196673163	640804	0	+	0.408602	(0.39,0.42]	chr1	64426	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2:ENST00000496761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	3.16612	3.247115	3.32811	0.00182819	4.03393e-4	0.0183913	0.00550292
chr5	177306097	177306176	6406830	0	+	0.417722	(0.39,0.42]	chr5	498059	1	CDS	CDS:UTR3:EXON_MRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000503853.1:ENST00000510701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	3.16612	3.247115	3.32811	0.00182819	4.03393e-4	0.0183913	0.00550292
chr2	65088299	65088395	2708070	0	-	0.364583	(0.36,0.39]	chr2	241346	16	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	54	2	3.1614	3.246905	3.33241	0.00193631	8.45012e-6	0.0192272	2.39274e-4
chr9	35067957	35068057	10638199	0	-	0.44	(0.42,0.455]	chr9	804569	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680731.1:ENST00000681845.1:ENST00000680079.1:ENST00000681386.1:ENST00000679449.1:ENST00000680900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	2.51988	3.246795	3.97371	0.00300574	6.07552e-5	0.0267032	0.00121305
chr19	6413359	6413445	17442173	0	-	0.255814	[0,0.29]	chr19	1456765	4	UTR3	UTR3:EXON_MRNA	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.79062	3.24657	3.70252	0.00169679	2.87026e-4	0.01759	0.00422471
chr4	176329308	176329406	5242234	0	+	0.357143	(0.33,0.36]	chr4	421869	11	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.02394	3.24651	3.46908	0.00114872	8.89743e-4	0.0130528	0.0102057
chr16	2818676	2818773	15495141	0	+	0.56701	(0.53,0.59]	chr16	1227870	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000570629.5:ENST00000570594.5:ENST00000574813.5:ENST00000577043.1:ENST00000575199.1:ENST00000574265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	86	2	2.39093	3.246465	4.102	6.55436e-4	1.01285e-6	0.00860229	4.03248e-5
chr7	12229748	12229819	8134812	0	+	0.323944	(0.29,0.33]	chr7	621586	2	CDS	CDS:UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000420833.5:ENST00000396668.8:ENST00000396667.7:ENST00000492762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	3.17627	3.2464000000000004	3.31653	0.00261621	8.41464e-5	0.0238929	0.00158584
chr20	31778812	31778898	17749755	0	+	0.418605	(0.39,0.42]	chr20	1498039	1	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.48556	3.2462799999999996	4.007	0.00384158	1.77795e-6	0.0320512	6.48503e-5
chr17	75039031	75039063	16682031	0	-	0.3125	(0.29,0.33]	chr17	1372877	1	CDS	CDS:UTR3:EXON_MRNA	ATP5PD	ENSG00000167863.12	ENST00000344546.8:ENST00000301587.9:ENST00000580649.1:ENST00000538432.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.24226	3.2457949999999998	4.24933	0.0306054	1.02924e-5	0.130226	2.83837e-4
chr11	34132124	34132221	11905808	0	+	0.463918	(0.455,0.49]	chr11	909677	1	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.84079	3.2457900000000004	3.65079	0.00201021	3.61776e-4	0.0190112	0.00544764
chr3	196058573	196058632	4663233	0	-	0.491525	(0.49,0.53]	chr3	385575	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000475593.5:ENST00000483983.5:ENST00000463356.5:ENST00000482479.1:ENST00000465288.5:ENST00000477148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	30	280	2	2.98302	3.24572	3.50842	1.2994e-7	7.41486e-9	7.00459e-6	6.5737e-7
chr19	17286615	17286715	17252967	0	+	0.52	(0.49,0.53]	chr19	1424036	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKLE1	ENSG00000160117.16	ENST00000394458.7:ENST00000651416.1:ENST00000594072.6:ENST00000596626.1:ENST00000652132.1:ENST00000404085.7:ENST00000598347.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	32	2	3.04181	3.24566	3.44951	0.0405223	1.75203e-4	0.153343	0.00306313
chr11	62570964	62571036	12409125	0	-	0.513889	(0.49,0.53]	chr11	960963	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000524420.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	185	2	3.17615	3.24547	3.31479	2.35202e-7	1.93611e-7	1.31076e-5	9.90287e-6
chr20	1369836	1369932	17875168	0	-	0.354167	(0.33,0.36]	chr20	1512311	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	98	2	2.7991	3.245365	3.69163	1.4715900000000001e-05	1.0343e-7	4.14197e-4	5.73686e-6
chr17	51161845	51161942	16266548	0	+	0.494845	(0.49,0.53]	chr17	1319594	1	UTR3	UTR3:EXON_MRNA:INTRON	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	100	2	2.54108	3.24504	3.949	5.09746e-4	4.74331e-8	0.00713668	2.94301e-6
chr17	1660504	1660578	16401375	0	-	0.513514	(0.49,0.53]	chr17	1334874	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.60116	3.245015	3.88887	0.0056515	9.98984e-5	0.0422191	0.00180257
chr17	21002343	21002441	16477809	0	-	0.459184	(0.455,0.49]	chr17	1346694	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	1.98188	3.244965	4.50805	0.0226804	0.00122223	0.105116	0.0135383
chr6	2955619	2955670	7570882	0	-	0.470588	(0.455,0.49]	chr6	577728	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	1.98188	3.244965	4.50805	0.0226804	0.00122223	0.105116	0.0135383
chr2	96303158	96303244	2790581	0	-	0.523256	(0.49,0.53]	chr2	248855	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.99849	3.24496	3.49143	0.00630123	6.13943e-5	0.0445415	0.00122382
chr7	66606922	66607014	8837042	0	-	0.521739	(0.49,0.53]	chr7	674931	3	EXON_PSEUDO	EXON_PSEUDO	RPL35P5	ENSG00000225573.4	ENST00000433398.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	39	2	2.99849	3.24496	3.49143	0.00630123	6.13943e-5	0.0445415	0.00122382
chr10	11894440	11894527	11369094	0	-	0.689655	(0.59,1]	chr10	867004	4	EXON_LNCRNA	EXON_LNCRNA	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	1	26	2	2.77418	3.24492	3.71566	0.0487443	0.0160729	0.175495	0.0860154
chr1	113977076	113977175	418246	0	+	0.40404	(0.39,0.42]	chr1	41199	37	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.88836	3.244835	3.60131	0.0102432	4.60576e-4	0.062872	0.00611208
chr2	222941654	222941753	2406347	0	+	0.40404	(0.39,0.42]	chr2	216635	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.88836	3.244835	3.60131	0.0102432	4.60576e-4	0.062872	0.00611208
chr5	41918487	41918586	5952039	0	+	0.414141	(0.39,0.42]	chr5	466508	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.88836	3.244835	3.60131	0.0102432	4.60576e-4	0.062872	0.00611208
chr19	10684465	10684563	17226235	0	+	0.438776	(0.42,0.455]	chr19	1418903	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000593061.5:ENST00000590869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	2.32656	3.24446	4.16236	0.00298867	1.83138e-5	0.0255712	4.99708e-4
chr22	20952381	20952478	18300207	0	+	0.453608	(0.42,0.455]	chr22	1553647	27	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	2.92031	3.2444100000000002	3.56851	4.70001e-5	3.9883e-5	9.75983e-4	9.51945e-4
chr11	10271851	10271951	12270552	0	-	0.39	(0.36,0.39]	chr11	948719	775	INTRON	INTRON	SBF2	ENSG00000133812.17	ENST00000676324.1:ENST00000256190.13:ENST00000675281.1:ENST00000676387.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.45656	3.2443799999999996	4.0322	0.0100637	0.00588589	0.0624019	0.0427941
chr12	79774054	79774153	13433685	0	-	0.373737	(0.36,0.39]	chr12	1057192	6	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.45656	3.2443799999999996	4.0322	0.0100637	0.00588589	0.0624019	0.0427941
chr14	55064726	55064825	14298048	0	+	0.373737	(0.36,0.39]	chr14	1117553	2	UTR3	UTR3:EXON_MRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.32678	3.2441050000000002	4.16143	0.0193538	0.00486719	0.0943643	0.0366328
chr11	95835192	95835289	12550032	0	-	0.42268	(0.42,0.455]	chr11	973820	25	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675438.1:ENST00000675489.1:ENST00000676261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.63665	3.244075	3.8515	0.0119089	0.0048172	0.0686664	0.0365653
chr3	149982368	149982462	4515889	0	-	0.43617	(0.42,0.455]	chr3	374865	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PFN2:TMEM183B	ENSG00000070087.14:ENSG00000224831.3	ENST00000649949.1:ENST00000494827.5:ENST00000497148.5:ENST00000463122.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	21	2	2.63665	3.244075	3.8515	0.0119089	0.0048172	0.0686664	0.0365653
chr3	156541130	156541229	4538643	0	-	0.40404	(0.39,0.42]	chr3	376076	17	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.84882	3.2438249999999997	4.63883	0.0214409	5.68159e-4	0.102904	0.0077844
chr12	6537830	6537913	12713621	0	+	0.626506	(0.59,1]	chr12	986662	4	CDS	CDS:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	605	2	3.09784	3.243785	3.38973	2.08719e-6	7.8508e-8	8.18241e-5	4.54003e-6
chr5	43705081	43705178	5960972	0	+	0.257732	[0,0.29]	chr5	467153	8	UTR3	UTR3:EXON_MRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000662525.1:ENST00000669601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	45	2	2.90186	3.24377	3.58568	8.35785e-5	6.04651e-5	0.00171841	0.00121098
chr14	51243855	51243913	14278735	0	+	0.482759	(0.455,0.49]	chr14	1116389	1	CDS	CDS:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000555574.1:ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.9967	3.2435150000000004	3.49033	0.00650423	7.92678e-4	0.0454205	0.00933379
chr5	138166014	138166108	6860684	0	-	0.489362	(0.455,0.49]	chr5	524836	3	CDS	CDS:UTR3:EXON_MRNA	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000506167.5:ENST00000483805.1:ENST00000463620.1:ENST00000453824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.9967	3.2435150000000004	3.49033	0.00650423	7.92678e-4	0.0454205	0.00933379
chr1	156309044	156309121	1314020	0	-	0.545455	(0.53,0.59]	chr1	133399	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	2.66813	3.243465	3.8188	5.09538e-4	1.54941e-4	0.00662599	0.0028049
chr11	66276430	66276527	11989568	0	+	0.608247	(0.59,1]	chr11	921606	3	UTR3	UTR3:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr17	7580995	7581095	16105728	0	+	0.6	(0.59,1]	chr17	1296997	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584180.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr17	48895769	48895820	16255809	0	+	0.627451	(0.59,1]	chr17	1317523	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5MC1	ENSG00000159199.14	ENST00000355938.9:ENST00000513347.1:ENST00000393366.7:ENST00000503641.5:ENST00000506855.1:ENST00000513781.5:ENST00000502964.5:ENST00000515060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr19	15244507	15244600	17484985	0	-	0.72043	(0.59,1]	chr19	1465318	4	CDS	CDS:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000594066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr22	23181453	23181551	18306638	0	+	0.632653	(0.59,1]	chr22	1555068	5	CDS	CDS:EXON_MRNA:INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr3	136250475	136250558	3762339	0	+	0.626506	(0.59,1]	chr3	321798	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000465423.5:ENST00000478469.5:ENST00000474833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr6	44255405	44255505	7710365	0	-	0.61	(0.59,1]	chr6	591840	7	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC35B2	ENSG00000157593.19	ENST00000495706.1:ENST00000393810.5:ENST00000393812.4:ENST00000615337.4:ENST00000538577.5:ENST00000537814.2:ENST00000619636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.4994	3.243455	3.98751	0.0333573	0.0301044	0.137922	0.129773
chr9	107306557	107306647	10410302	0	+	0.533333	(0.53,0.59]	chr9	783995	3	CDS	CDS:EXON_MRNA	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.64475	3.2434450000000004	3.84214	0.00453071	6.5494e-6	0.0351187	1.94116e-4
chr8	20220302	20220402	9220100	0	+	0.5	(0.49,0.53]	chr8	704734	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	1.92759	3.2434399999999997	4.55929	0.0267071	0.00116196	0.118504	0.0130851
chr12	102112169	102112232	13508519	0	-	0.412698	(0.39,0.42]	chr12	1061975	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000251074.5:ENST00000551744.2:ENST00000551200.5:ENST00000543021.5:ENST00000548994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	2.18155	3.2434250000000002	4.3053	0.0283931	7.30538e-6	0.127654	2.13219e-4
chr15	64980944	64981025	15342541	0	-	0.469136	(0.455,0.49]	chr15	1211276	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558943.5:ENST00000558415.5:ENST00000560878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.46624	3.24332	4.0204	0.0094145	0.00736097	0.0592633	0.0490627
chr17	44925883	44925981	16560609	0	-	0.489796	(0.455,0.49]	chr17	1359908	13	UTR3	UTR3:EXON_MRNA	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.46624	3.24332	4.0204	0.0094145	0.00736097	0.0592633	0.0490627
chr16	87838765	87838817	16072522	0	-	0.576923	(0.53,0.59]	chr16	1291276	2	CDS	CDS:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.35511	3.243265	4.13142	0.0445399	8.11888e-7	0.172163	3.35153e-5
chr1	89104380	89104477	1157274	0	-	0.350515	(0.33,0.36]	chr1	114225	2	EXON_PSEUDO	EXON_PSEUDO	PTGES3P1	ENSG00000234518.2	ENST00000439531.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	59	2	2.6254	3.2432600000000003	3.86112	0.00106803	5.30957e-7	0.0124232	2.33308e-5
chr19	46609124	46609153	17357581	0	+	0.37931	(0.36,0.39]	chr19	1440685	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CALM3	ENSG00000160014.17	ENST00000391918.6:ENST00000597743.5:ENST00000477244.5:ENST00000291295.14:ENST00000598871.5:ENST00000595072.2:ENST00000602169.2:ENST00000594523.5:ENST00000597868.5:ENST00000599839.5:ENST00000596362.1:ENST00000482455.5:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	1.89872	3.243095	4.58747	0.056542	6.55819e-4	0.19417	0.00860229
chr10	100151548	100151645	11660912	0	-	0.443299	(0.42,0.455]	chr10	888405	16	UTR3	UTR3:EXON_MRNA	ERLIN1	ENSG00000107566.14	ENST00000421367.7	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.06293	3.2430149999999998	3.4231	0.00492128	0.00112541	0.0366648	0.0128481
chr7	76063514	76063592	8342373	0	+	0.564103	(0.53,0.59]	chr7	636244	1	CDS	CDS:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2:ENST00000424167.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	208	2	2.97752	3.243005	3.50849	9.36517e-7	1.11077e-7	3.78966e-5	6.89479e-6
chr12	110346200	110346285	13085911	0	+	0.517647	(0.49,0.53]	chr12	1020552	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	111	2	2.87641	3.24294	3.60947	1.54355e-4	8.62352e-8	0.00280158	4.92727e-6
chr1	223798491	223798584	1524274	0	-	0.516129	(0.49,0.53]	chr1	152269	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000483398.5:ENST00000498843.5:ENST00000494100.1:ENST00000464656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	3.15207	3.242655	3.33324	0.00347189	0.00162947	0.0286293	0.0169972
chr21	43565519	43565619	18135372	0	+	0.66	(0.59,1]	chr21	1538160	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BS1	ENSG00000234289.6	ENST00000599962.2	protein_coding	protein_coding	protein_coding	protein_coding	9	177	2	3.07514	3.2425800000000002	3.41002	3.61752e-5	2.4214e-5	7.90632e-4	6.26799e-4
chr19	41342169	41342247	17568604	0	-	0.551282	(0.53,0.59]	chr19	1476893	1	CDS	CDS:EXON_MRNA:INTRON	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1:ENST00000597453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	48	2	2.80515	3.24254	3.67993	6.42453e-4	3.22778e-4	0.00850441	0.0046122
chr4	10074526	10074621	5311583	0	-	0.368421	(0.36,0.39]	chr4	427623	3	UTR3	UTR3:EXON_MRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.78659	3.24247	3.69835	0.0132982	3.2708e-4	0.0740932	0.00502339
chr6	28904169	28904254	7652694	0	-	0.541176	(0.53,0.59]	chr6	583184	1	CDS	CDS:UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	1.71269	3.242455	4.77222	0.0222391	6.67251e-4	0.104593	0.00867533
chr20	58994858	58994950	17841417	0	+	0.543478	(0.53,0.59]	chr20	1508892	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000652272.2:ENST00000460601.5:ENST00000477741.5:ENST00000474543.5:ENST00000478389.5:ENST00000479207.1:ENST00000486263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	3.17542	3.242425	3.30943	0.0018255	3.78824e-4	0.0183913	0.00525548
chr9	129005454	129005530	10482839	0	+	0.578947	(0.53,0.59]	chr9	791169	3	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.0099	3.242045	3.47419	0.00600486	8.75273e-4	0.042887	0.0106963
chr11	62560068	62560130	12409011	0	-	0.564516	(0.53,0.59]	chr11	960944	1	CDS	CDS:UTR3:EXON_MRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	242	2	2.41335	3.242025	4.0707	3.15004e-5	6.10881e-10	7.01963e-4	7.45307e-8
chr1	33324386	33324481	925695	0	-	0.547368	(0.53,0.59]	chr1	97633	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHC2	ENSG00000134686.19	ENST00000431992.5:ENST00000683057.1:ENST00000257118.5:ENST00000373422.7:ENST00000373418.7:ENST00000485928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	3.02054	3.2420150000000003	3.46349	0.00577011	9.2216e-4	0.0426551	0.0104432
chr11	61416104	61416187	12404655	0	-	0.566265	(0.53,0.59]	chr11	960376	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	3.02054	3.2420150000000003	3.46349	0.00577011	9.2216e-4	0.0426551	0.0104432
chr7	158731091	158731188	9159278	0	-	0.536082	(0.53,0.59]	chr7	699685	2	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	3.02054	3.2420150000000003	3.46349	0.00577011	9.2216e-4	0.0426551	0.0104432
chr11	119090189	119090265	12161985	0	+	0.565789	(0.53,0.59]	chr11	937719	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.43852	3.2419000000000002	4.04528	0.00373745	4.28524e-5	0.0303359	9.98851e-4
chr3	150458735	150458835	3807490	0	+	0.42	(0.39,0.42]	chr3	324963	2	UTR3	UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000480589.1:ENST00000466814.1:ENST00000460316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	2.82591	3.241755	3.6576	2.09867e-4	2.40332e-5	0.00327655	6.22273e-4
chr10	17233769	17233850	10938816	0	+	0.518519	(0.49,0.53]	chr10	832994	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5:ENST00000421459.2:ENST00000637053.1:ENST00000495528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	86	2	3.09336	3.2417350000000003	3.39011	1.28432e-4	1.47382e-6	0.00241206	5.5546e-5
chr1	17409089	17409189	874021	0	-	0.47	(0.455,0.49]	chr1	89601	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	3.24054	3.2417	3.24286	2.77105e-4	1.36125e-5	0.00444204	3.54626e-4
chr2	159741861	159741961	2162968	0	+	0.35	(0.33,0.36]	chr2	199177	74	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1:ENST00000409591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.91384	3.2416650000000002	3.56949	0.0021527	5.48184e-4	0.0208395	0.00697082
chr22	17628635	17628692	18424138	0	-	0.526316	(0.49,0.53]	chr22	1569512	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000478963.5:ENST00000460085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	3.04181	3.2416549999999997	3.4415	9.98297e-4	1.75203e-4	0.0111246	0.00306313
chr19	49719497	49719594	17607165	0	-	0.659794	(0.59,1]	chr19	1484152	1	EXON_PSEUDO	EXON_PSEUDO	CTB-33G10.1	ENSG00000243829.1	ENST00000498085.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	54	2	1.94138	3.241605	4.54183	0.0100942	0.0070583	0.0625146	0.0478044
chr7	155308240	155308299	8632655	0	+	0.457627	(0.455,0.49]	chr7	659288	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	14	195	2	1.93086	3.241235	4.55161	0.00521832	2.10265e-12	0.0398977	4.3848e-10
chr1	42807051	42807141	966660	0	-	0.233333	[0,0.29]	chr1	101793	1	UTR3	UTR3:EXON_MRNA	SVBP	ENSG00000177868.12	ENST00000372521.9:ENST00000372522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr12	14786567	14786666	13220956	0	-	0.262626	[0,0.29]	chr12	1036698	21	UTR3	UTR3:EXON_MRNA	WBP11	ENSG00000084463.8	ENST00000261167.7	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr12	14801383	14801428	13221118	0	-	0.244444	[0,0.29]	chr12	1036756	1	UTR5	UTR5:EXON_MRNA	WBP11	ENSG00000084463.8	ENST00000261167.7:ENST00000535638.5:ENST00000544764.5:ENST00000535328.1:ENST00000543316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr12	98634295	98634354	13490468	0	-	0.271186	[0,0.29]	chr12	1060907	1	CDS	CDS:EXON_MRNA:INTRON	IKBIP	ENSG00000166130.15	ENST00000342502.6:ENST00000393042.3:ENST00000299157.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr16	20695774	20695874	15581964	0	+	0.26	[0,0.29]	chr16	1234655	137	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr17	49404803	49404897	16581146	0	-	0.287234	[0,0.29]	chr17	1362358	9	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr4	82955356	82955456	5497769	0	-	0.25	[0,0.29]	chr4	440425	85	INTRON	INTRON	LIN54	ENSG00000189308.11	ENST00000340417.8:ENST00000510877.5:ENST00000446851.6:ENST00000442461.6:ENST00000510557.5:ENST00000508171.5:ENST00000506560.5:ENST00000505397.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr7	123684418	123684518	9046228	0	-	0.22	[0,0.29]	chr7	690611	26	UTR3	UTR3:EXON_MRNA	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr9	73158601	73158694	10304664	0	+	0.225806	[0,0.29]	chr9	776014	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5:ENST00000376911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	2.82443	3.241165	3.6579	0.0197988	0.0180803	0.0983378	0.0920398
chr5	133980880	133980956	6843357	0	-	0.434211	(0.42,0.455]	chr5	523584	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000425992.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	113	2	3.03829	3.241075	3.44386	9.46623e-6	3.57575e-7	2.90173e-4	1.65607e-5
chr4	105485882	105485981	5026470	0	+	0.474747	(0.455,0.49]	chr4	409127	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	89	2	2.53963	3.241015	3.9424	0.00112063	4.77122e-8	0.0128408	2.95928e-6
chr9	94446879	94446936	10367659	0	+	0.403509	(0.39,0.42]	chr9	780561	2	CDS	CDS:UTR5:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.54172	3.2408400000000004	3.93996	0.00841622	0.00247353	0.054565	0.0223024
chr5	32406773	32406855	6519427	0	-	0.451219	(0.42,0.455]	chr5	505027	1	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.57051	3.2407399999999997	3.91097	0.0265466	8.75299e-5	0.120071	0.0016272
chr1	65608752	65608826	253393	0	+	0.364865	(0.36,0.39]	chr1	28849	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	3.18642	3.24058	3.29474	0.00359152	0.00194306	0.0302391	0.0185233
chr15	90484285	90484352	15100622	0	+	0.38806	(0.36,0.39]	chr15	1188180	2	CDS	CDS:UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560218.1:ENST00000558491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	3.18642	3.24058	3.29474	0.00359152	0.00194306	0.0302391	0.0185233
chrX	3889553	3889652	18932681	0	-	0.363636	(0.36,0.39]	chrX	1613506	74	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	3.18642	3.24058	3.29474	0.00359152	0.00194306	0.0302391	0.0185233
chr2	61872081	61872159	2691363	0	-	0.435897	(0.42,0.455]	chr2	240539	1	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	121	2	2.61455	3.240555	3.86656	3.62473e-4	7.81804e-9	0.00545349	6.27317e-7
chr10	27145427	27145508	11423643	0	-	0.345679	(0.33,0.36]	chr10	870985	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	3.04091	3.240405	3.4399	1.29517e-4	9.09543e-6	0.00242147	2.53877e-4
chr17	75319974	75320072	16683202	0	-	0.408163	(0.39,0.42]	chr17	1373171	13	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1:ENST00000648046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	2.5823	3.24039	3.89848	0.00246531	9.30194e-5	0.0230262	0.00169783
chr1	31497629	31497683	918949	0	-	0.425926	(0.42,0.455]	chr1	96274	2	EXON_SMALL	EXON_SMALL	RNU6-40P	ENSG00000206981.1	ENST00000384254.1	snRNA	snRNA	snRNA	snRNA	5	49	2	1.87159	3.240275	4.60896	0.0214479	8.72604e-7	0.102998	3.55816e-5
chr13	21628412	21628498	13928410	0	-	0.337209	(0.33,0.36]	chr13	1092751	1	EXON_PSEUDO	EXON_PSEUDO	RPS7P10	ENSG00000226525.5	ENST00000464254.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	48	2	2.31697	3.2401600000000004	4.16335	0.00966431	5.09889e-7	0.0606263	2.25036e-5
chr1	206463463	206463560	681268	0	+	0.453608	(0.42,0.455]	chr1	68788	22	UTR3	UTR3:EXON_MRNA	SRGAP2	ENSG00000266028.8	ENST00000573034.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.57051	3.23986	3.90921	0.0265466	0.0121657	0.120071	0.0701019
chrX	3854727	3854827	18932326	0	-	0.44	(0.42,0.455]	chrX	1613472	21	EXON_LNCRNA	EXON_LNCRNA	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000381108.3:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.57051	3.23986	3.90921	0.0265466	0.0121657	0.120071	0.0701019
chr1	15940268	15940362	71946	0	+	0.531915	(0.53,0.59]	chr1	8126	10	UTR3	UTR3:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.78899	3.23982	3.69065	0.00245784	3.04331e-4	0.0221765	0.00472028
chr16	29805114	29805174	15626757	0	+	0.583333	(0.53,0.59]	chr16	1239303	1	CDS	CDS:UTR3:EXON_MRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000160827.9:ENST00000400751.9:ENST00000569382.2:ENST00000565736.1:ENST00000568312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.86102	3.23979	3.61856	0.0303021	0.0017805	0.129773	0.0172974
chr21	31685048	31685144	18211327	0	-	0.572917	(0.53,0.59]	chr21	1545280	1	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.86102	3.23979	3.61856	0.0303021	0.0017805	0.129773	0.0172974
chr10	124397758	124397849	11729252	0	-	0.285714	[0,0.29]	chr10	895040	6	UTR3	UTR3:EXON_MRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6	protein_coding	protein_coding	protein_coding	protein_coding	16	74	2	2.25282	3.23964	4.22646	1.36506e-4	7.29804e-7	0.0023211	3.41021e-5
chr2	69594819	69594899	2720791	0	-	0.425	(0.42,0.455]	chr2	242311	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	AAK1:RPL36AP16	ENSG00000115977.21:ENSG00000232228.1	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1:ENST00000441658.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:processed_pseudogene	5	46	2	2.76546	3.239555	3.71365	2.96831e-4	2.63375e-4	0.0043341	0.00427022
chr8	47859684	47859759	9816377	0	-	0.413333	(0.39,0.42]	chr8	742681	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.54172	3.239545	3.93737	0.00247353	7.80292e-5	0.0223024	0.00162998
chrX	121203181	121203277	19198090	0	-	0.4375	(0.42,0.455]	chrX	1632450	1	EXON_PSEUDO	EXON_PSEUDO	HSPA8P1	ENSG00000234176.1	ENST00000425843.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	38	2	2.91373	3.2394350000000003	3.56514	0.00892357	3.86623e-5	0.0567495	8.37229e-4
chr1	147203079	147203177	1274317	0	-	0.265306	[0,0.29]	chr1	126415	12	INTRON	INTRON	FMO5	ENSG00000131781.13	ENST00000527849.5:ENST00000441068.6:ENST00000578284.5:ENST00000254090.9:ENST00000369272.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.82443	3.23939	3.65435	0.0180803	2.35911e-5	0.0920398	5.58e-4
chrX	132205093	132205192	19232155	0	-	0.30303	(0.29,0.33]	chrX	1634123	22	UTR3	UTR3:EXON_MRNA	RAP2C	ENSG00000123728.10	ENST00000620646.4:ENST00000370874.2:ENST00000342983.6	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.02337	3.2393549999999998	4.45534	0.0217631	0.00110984	0.103469	0.0127344
chr2	37099507	37099607	2597008	0	-	0.36	(0.33,0.36]	chr2	233829	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.13965	3.239305	4.33896	0.0297101	0.00182033	0.129986	0.0183913
chr2	69319877	69319976	2718257	0	-	0.343434	(0.33,0.36]	chr2	241994	2	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.13965	3.239305	4.33896	0.0297101	0.00182033	0.129986	0.0183913
chr5	864376	864467	6421616	0	-	0.340659	(0.33,0.36]	chr5	500258	8	UTR3	UTR3:EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5:ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000483234.5:ENST00000497410.5:ENST00000489816.5:ENST00000483173.5:ENST00000519112.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.13965	3.239305	4.33896	0.0297101	0.00182033	0.129986	0.0183913
chr2	112659482	112659575	2001882	0	+	0.462366	(0.455,0.49]	chr2	190042	4	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	3.09445	3.239275	3.3841	6.1765e-4	1.17485e-4	0.00822794	0.00206023
chr5	37329189	37329278	6540343	0	-	0.483146	(0.455,0.49]	chr5	506606	1	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	3.09445	3.239275	3.3841	6.1765e-4	1.17485e-4	0.00822794	0.00206023
chr2	197486583	197486675	3106758	0	-	0.282609	[0,0.29]	chr2	274620	1	UTR3	UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	2.65703	3.2392399999999997	3.82145	0.00320067	7.32756e-6	0.0280721	2.13661e-4
chr2	37201961	37202060	1742645	0	+	0.484848	(0.455,0.49]	chr2	169570	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000406711.5:ENST00000392061.6:ENST00000397226.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.66563	3.23919	3.81275	0.0138827	0.0043075	0.0760883	0.0334284
chr2	69337897	69337976	2718444	0	-	0.468354	(0.455,0.49]	chr2	242023	1	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.66563	3.23919	3.81275	0.0138827	0.0043075	0.0760883	0.0334284
chr22	40826637	40826666	18517890	0	-	0.482759	(0.455,0.49]	chr22	1580939	1	CDS	CDS:UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8:ENST00000620312.4	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.66563	3.23919	3.81275	0.0138827	0.0043075	0.0760883	0.0334284
chr6	24697974	24698067	7094841	0	+	0.462366	(0.455,0.49]	chr6	542169	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACOT13	ENSG00000112304.11	ENST00000537591.5:ENST00000230048.5:ENST00000476436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.66563	3.23919	3.81275	0.0138827	0.0043075	0.0760883	0.0334284
chr11	117159933	117160023	12154258	0	+	0.433333	(0.42,0.455]	chr11	936168	1	CDS	CDS:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1:ENST00000533206.1:ENST00000533677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	1.93033	3.2391250000000005	4.54792	0.0505055	9.66045e-4	0.181202	0.0115185
chr7	75473003	75473103	8859495	0	-	0.45	(0.42,0.455]	chr7	677026	304	INTRON	INTRON	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000398379.2	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.93033	3.2391250000000005	4.54792	0.0505055	9.66045e-4	0.181202	0.0115185
chr19	58548293	58548350	17413333	0	+	0.561404	(0.53,0.59]	chr19	1451200	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597172.5:ENST00000601150.5:ENST00000597995.1:ENST00000597136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	117	2	3.22744	3.23902	3.2506	1.57108e-5	2.02344e-6	4.3971e-4	7.22855e-5
chr21	9833376	9833475	18158763	0	-	0.616162	(0.59,1]	chr21	1541889	167	INTRON	INTRON	LINC01667	ENSG00000280081.4	ENST00000651050.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	40	2	1.90752	3.2389449999999997	4.57037	0.0282297	0.0054994	0.127287	0.0402071
chr4	1981207	1981307	4682477	0	+	0.44	(0.42,0.455]	chr4	388253	24	UTR3	UTR3:EXON_MRNA	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000677559.1:ENST00000679039.1:ENST00000677895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.07474	3.2387499999999996	4.40276	0.0338882	0.0017618	0.139841	0.0180053
chr11	33353279	33353373	11901847	0	+	0.531915	(0.53,0.59]	chr11	909308	3	CDS	CDS:EXON_MRNA	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chr12	56600942	56601020	13351704	0	-	0.564103	(0.53,0.59]	chr12	1051620	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5:ENST00000553222.1:ENST00000547453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chr18	74518948	74519022	16949402	0	+	0.554054	(0.53,0.59]	chr18	1394145	1	CDS	CDS:EXON_MRNA:INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chr19	44649907	44650006	17348025	0	+	0.585859	(0.53,0.59]	chr19	1438827	2	CDS	CDS:UTR3:EXON_MRNA	PVR	ENSG00000073008.15	ENST00000344956.8:ENST00000425690.8:ENST00000403059.8:ENST00000187830.2:ENST00000406449.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chr6	31505642	31505742	7115375	0	+	0.58	(0.53,0.59]	chr6	545663	1	CDS_START	CDS_START:CDS:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chr8	80559559	80559658	9427552	0	+	0.565657	(0.53,0.59]	chr8	719144	8	EXON_PSEUDO	EXON_PSEUDO	RPSAP47	ENSG00000188856.6	ENST00000479228.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chrX	153971622	153971720	19275831	0	-	0.561224	(0.53,0.59]	chrX	1637988	9	UTR5	UTR5:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.65894	3.238665	3.81839	0.0193255	0.0184435	0.0945306	0.0943643
chr17	67945774	67945866	16333328	0	+	0.456522	(0.455,0.49]	chr17	1325046	5	CDS	CDS:EXON_MRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.51261	3.238625	3.96464	0.00280343	6.27408e-5	0.0242354	0.00135074
chr5	77582655	77582748	6050208	0	+	0.483871	(0.455,0.49]	chr5	474660	4	EXON_PSEUDO	EXON_PSEUDO	RPL7P23	ENSG00000244363.3	ENST00000493874.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	39	2	2.51261	3.238625	3.96464	0.00280343	6.27408e-5	0.0242354	0.00135074
chr2	96281813	96281867	2790332	0	-	0.5	(0.49,0.53]	chr2	248722	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000493271.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.72252	3.2385599999999997	3.7546	0.0161474	2.09468e-4	0.0860154	0.00327655
chr6	41787697	41787797	7150311	0	+	0.6	(0.59,1]	chr6	551642	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	119	2	2.67664	3.2383699999999997	3.8001	6.8436e-4	2.36702e-5	0.00836671	6.1689e-4
chr1	168246033	168246133	526529	0	+	0.39	(0.36,0.39]	chr1	56538	36	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.44447	3.2383349999999997	4.0322	0.0364669	0.00588589	0.145024	0.0427941
chr11	18609464	18609563	12303762	0	-	0.373737	(0.36,0.39]	chr11	951659	32	UTR3	UTR3:EXON_MRNA	SPTY2D1	ENSG00000179119.15	ENST00000336349.6	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.44447	3.2383349999999997	4.0322	0.0364669	0.00588589	0.145024	0.0427941
chr2	136199808	136199907	2899176	0	-	0.383838	(0.36,0.39]	chr2	258697	8	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP2	ENSG00000227347.1	ENST00000447355.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.44447	3.2383349999999997	4.0322	0.0364669	0.00588589	0.145024	0.0427941
chr2	152655814	152655912	2944037	0	-	0.377551	(0.36,0.39]	chr2	261535	44	UTR3	UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.44447	3.2383349999999997	4.0322	0.0364669	0.00588589	0.145024	0.0427941
chr6	43328304	43328390	7157208	0	+	0.383721	(0.36,0.39]	chr6	553020	3	EXON_PSEUDO	EXON_PSEUDO	RP11-480N24.4	ENSG00000220614.1	ENST00000406943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.44447	3.2383349999999997	4.0322	0.0364669	0.00588589	0.145024	0.0427941
chr1	169807859	169807929	530113	0	+	0.414286	(0.39,0.42]	chr1	56842	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C1orf112	ENSG00000000460.17	ENST00000498289.5:ENST00000359326.9:ENST00000459772.5:ENST00000466580.6:ENST00000286031.10:ENST00000413811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	3.0503	3.2382	3.4261	0.00570576	0.00107164	0.0424438	0.0118238
chr16	58580696	58580760	15966878	0	-	0.40625	(0.39,0.42]	chr16	1281258	2	CDS	CDS:EXON_MRNA:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000565605.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	3.0503	3.2382	3.4261	0.00570576	0.00107164	0.0424438	0.0118238
chr6	33409645	33409690	7121939	0	+	0.488889	(0.455,0.49]	chr6	547600	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	3.13787	3.23799	3.33811	4.66183e-4	2.75808e-5	0.00616585	6.9956e-4
chr6	18224543	18224641	7622462	0	-	0.326531	(0.29,0.33]	chr6	580929	8	UTR3	UTR3:EXON_MRNA	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	1.71387	3.23789	4.76191	0.0355849	2.22391e-7	0.147262	1.10935e-5
chr11	61310294	61310356	12403996	0	-	0.467742	(0.455,0.49]	chr11	960204	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	1.96875	3.23752	4.50629	0.0480352	3.09017e-8	0.180552	2.04921e-6
chr4	137448418	137448501	5120341	0	+	0.409639	(0.39,0.42]	chr4	414825	5	EXON_PSEUDO	EXON_PSEUDO	RPS23P2	ENSG00000213448.3	ENST00000463671.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	56	2	2.74243	3.23749	3.73255	0.00369167	1.51578e-6	0.030936	5.67784e-5
chr5	116716486	116716568	6166918	0	+	0.402439	(0.39,0.42]	chr5	481412	4	EXON_PSEUDO	EXON_PSEUDO	RPS17P2	ENSG00000197575.6	ENST00000461663.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	42	2	3.19588	3.23746	3.27904	0.00321212	3.95466e-5	0.0280721	8.52304e-4
chr9	97930924	97931023	10759660	0	-	0.333333	(0.33,0.36]	chr9	814691	10	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	2.8728	3.23739	3.60198	6.01238e-4	3.16831e-5	0.00811676	7.04278e-4
chr1	17028599	17028667	873096	0	-	0.411765	(0.39,0.42]	chr1	89456	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5:ENST00000475506.1:ENST00000463045.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	3.02517	3.2372	3.44923	0.00105208	8.3811e-4	0.0123035	0.00981548
chr17	4798080	4798153	16093299	0	+	0.479452	(0.455,0.49]	chr17	1294592	2	CDS	CDS:UTR3:EXON_MRNA	PSMB6	ENSG00000142507.10	ENST00000614486.4:ENST00000270586.8:ENST00000571309.1:ENST00000575643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	3.17056	3.2372	3.30384	0.00184955	4.1243e-4	0.0178046	0.00604953
chr5	134390548	134390645	6228808	0	+	0.278351	[0,0.29]	chr5	485032	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBE2B	ENSG00000119048.8	ENST00000265339.7:ENST00000507277.1:ENST00000499038.2:ENST00000503080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	22	2	2.55853	3.23712	3.91571	0.007538	1.5798e-4	0.0497903	0.00285004
chr8	56961010	56961109	9836801	0	-	0.494949	(0.49,0.53]	chr8	744432	32	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.21702	3.23712	4.25722	0.00959574	1.00699e-5	0.0603269	3.03291e-4
chr1	113112478	113112572	413546	0	+	0.510638	(0.49,0.53]	chr1	40825	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.8671	3.236815	3.60653	0.0100489	4.50981e-4	0.0623334	0.00605268
chr2	43901455	43901524	2623063	0	-	0.507246	(0.49,0.53]	chr2	236124	3	CDS	CDS:UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683528.1:ENST00000683802.1:ENST00000682845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.8671	3.236815	3.60653	0.0100489	4.50981e-4	0.0623334	0.00605268
chr3	155853724	155853810	4538376	0	-	0.523256	(0.49,0.53]	chr3	376029	6	CDS	CDS:EXON_MRNA	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.8671	3.236815	3.60653	0.0100489	4.50981e-4	0.0623334	0.00605268
chr7	55445158	55445258	8824268	0	-	0.47	(0.455,0.49]	chr7	673327	86	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	15	2	2.9967	3.236705	3.47671	0.0368644	0.00650423	0.145024	0.0454205
chrX	3928281	3928380	18933075	0	-	0.464646	(0.455,0.49]	chrX	1613536	77	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.9967	3.236705	3.47671	0.0368644	0.00650423	0.145024	0.0454205
chr2	128191918	128192017	2060531	0	+	0.535354	(0.53,0.59]	chr2	193397	23	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.0404	3.236595	4.43279	0.0362529	0.0026472	0.148525	0.0231864
chr8	22005088	22005187	9222135	0	+	0.585859	(0.53,0.59]	chr8	705059	1	UTR3	UTR3:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.0404	3.236595	4.43279	0.0362529	0.0026472	0.148525	0.0231864
chr19	10294039	10294132	17224731	0	+	0.602151	(0.59,1]	chr19	1418554	1	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.77418	3.23639	3.6986	0.0160729	4.89626e-4	0.0860154	0.00639399
chr7	155308358	155308456	8632657	0	+	0.418367	(0.39,0.42]	chr7	659289	1	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	31	251	2	3.08751	3.2363299999999997	3.38515	4.83371e-8	7.88467e-9	3.3081e-6	6.31141e-7
chr1	42664862	42664955	161073	0	+	0.483871	(0.455,0.49]	chr1	20185	1	CDS	CDS:UTR3:EXON_MRNA	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678803.1:ENST00000678333.1:ENST00000677926.1:ENST00000677307.1:ENST00000440068.6:ENST00000677356.1:ENST00000679245.1:ENST00000678308.1:ENST00000678076.1:ENST00000677312.1:ENST00000677219.1:ENST00000461351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	64	2	2.80517	3.23628	3.66739	1.00884e-4	2.02214e-5	0.00181604	5.39633e-4
chr1	31630051	31630145	919022	0	-	0.542553	(0.53,0.59]	chr1	96296	3	UTR3	UTR3:EXON_MRNA	PEF1	ENSG00000162517.13	ENST00000373703.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr10	3136479	3136579	10903887	0	+	0.57	(0.53,0.59]	chr10	829803	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PFKP:RP11-298E9.7	ENSG00000067057.18:ENSG00000278419.1	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000381072.5:ENST00000433193.2:ENST00000441377.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr11	6610921	6611011	12249875	0	-	0.533333	(0.53,0.59]	chr11	946815	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TAF10:RP11-732A19.10	ENSG00000166337.10:ENSG00000285338.1	ENST00000299424.9:ENST00000616342.1:ENST00000527248.2:ENST00000532191.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr11	117190165	117190227	12154578	0	+	0.564516	(0.53,0.59]	chr11	936277	1	CDS	CDS:EXON_MRNA:INTRON	SIDT2	ENSG00000149577.16	ENST00000324225.9:ENST00000620360.4:ENST00000278951.11:ENST00000525339.1:ENST00000431081.6:ENST00000628876.2:ENST00000529441.5:ENST00000526813.1:ENST00000524988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr12	49033067	49033166	13323307	0	-	0.585859	(0.53,0.59]	chr12	1045457	20	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr14	22926132	22926165	14527952	0	-	0.575758	(0.53,0.59]	chr14	1138160	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000555530.5:ENST00000556043.5:ENST00000553550.5:ENST00000554716.5:ENST00000553787.5:ENST00000553641.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr17	71460	71556	16388710	0	-	0.583333	(0.53,0.59]	chr17	1333310	2	EXON_LNCRNA	EXON_LNCRNA	LINC02887	ENSG00000280279.1	ENST00000623180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr17	28758964	28759064	16487319	0	-	0.59	(0.53,0.59]	chr17	1348269	7	CDS	CDS:UTR3:EXON_MRNA	FAM222B	ENSG00000173065.14	ENST00000577513.6:ENST00000583953.6:ENST00000583522.6:ENST00000341217.7:ENST00000577376.6:ENST00000577682.6:ENST00000581407.6:ENST00000582266.6:ENST00000581229.6:ENST00000583307.6:ENST00000452648.8:ENST00000582059.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr17	29574417	29574512	16491510	0	-	0.589474	(0.53,0.59]	chr17	1348923	11	UTR3	UTR3:EXON_MRNA	GIT1	ENSG00000108262.16	ENST00000225394.8:ENST00000394869.7:ENST00000473217.5:ENST00000581348.5:ENST00000579937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr17	75849603	75849656	16685265	0	-	0.54717	(0.53,0.59]	chr17	1373638	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000588373.5:ENST00000433525.6:ENST00000416574.6:ENST00000589642.5:ENST00000587374.5:ENST00000593002.1:ENST00000589241.5:ENST00000590450.5:ENST00000589834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr17	78175528	78175563	16693283	0	-	0.571429	(0.53,0.59]	chr17	1375304	1	CDS	CDS:UTR3:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5:ENST00000590430.5:ENST00000586613.1:ENST00000592126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr19	16555151	16555233	17491610	0	-	0.573171	(0.53,0.59]	chr19	1466506	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1:ENST00000421082.1:ENST00000469055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr20	35002588	35002681	17950345	0	-	0.569892	(0.53,0.59]	chr20	1520421	3	UTR3	UTR3:EXON_MRNA	TRPC4AP	ENSG00000100991.12	ENST00000451813.6:ENST00000252015.3	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr20	49117125	49117186	17999429	0	-	0.540984	(0.53,0.59]	chr20	1525576	1	CDS	CDS:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr8	143917460	143917559	10146649	0	-	0.575758	(0.53,0.59]	chr8	763001	13	CDS	CDS:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8:ENST00000527096.5	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.64837	3.23622	3.82407	0.0199467	0.0179666	0.0984041	0.0918323
chr19	57293681	57293778	17405797	0	+	0.360825	(0.36,0.39]	chr19	1450092	16	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	2.82476	3.236035	3.64731	8.21459e-4	2.27851e-5	0.0102028	5.41358e-4
chr3	47857430	47857512	4163817	0	-	0.463415	(0.455,0.49]	chr3	348509	1	CDS	CDS:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000477765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	2.04847	3.23598	4.42349	0.0192065	3.27827e-6	0.0943643	1.08637e-4
chr5	154888109	154888209	6930036	0	-	0.41	(0.39,0.42]	chr5	530640	8	UTR3	UTR3:EXON_MRNA	GEMIN5	ENSG00000082516.9	ENST00000285873.8	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.37759	3.2358900000000004	4.09419	0.0428865	2.95839e-5	0.161091	7.34143e-4
chr4	143871954	143872053	5695929	0	-	0.474747	(0.455,0.49]	chr4	451429	12	UTR3	UTR3:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	2.50703	3.235835	3.96464	6.13589e-4	6.27408e-5	0.00765301	0.00135074
chr7	107919549	107919646	8457483	0	+	0.350515	(0.33,0.36]	chr7	646335	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	2.34311	3.235755	4.1284	0.00407303	0.00300559	0.0324137	0.0256959
chr12	56741745	56741837	13352788	0	-	0.413043	(0.39,0.42]	chr12	1051908	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000549549.1:ENST00000550770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	1.79377	3.23571	4.67765	0.0299302	7.04737e-4	0.129773	0.00848325
chr20	32850306	32850405	17755876	0	+	0.313131	(0.29,0.33]	chr20	1498956	17	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.92065	3.23557	3.55049	0.0117842	6.15323e-4	0.0686664	0.00765848
chrX	115718743	115718842	19185325	0	-	0.323232	(0.29,0.33]	chrX	1631181	52	INTRON	INTRON	DANT2	ENSG00000235244.4	ENST00000664453.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	2.92065	3.23557	3.55049	0.0117842	6.15323e-4	0.0686664	0.00765848
chr2	161367477	161367549	2164948	0	+	0.5	(0.49,0.53]	chr2	199364	1	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	3.04107	3.235305	3.42954	0.00533879	0.00105489	0.0392268	0.0123035
chr2	65261319	65261392	1854300	0	+	0.39726	(0.39,0.42]	chr2	175970	2	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.70591	3.235265	3.76462	0.0185716	1.17915e-6	0.0932453	4.5939e-5
chr12	55992410	55992510	12897147	0	+	0.48	(0.455,0.49]	chr12	1003857	3	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10:ENST00000448789.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	3.11002	3.2352600000000002	3.3605	0.00147278	1.15314e-4	0.0157578	0.0020426
chr1	172442026	172442125	1369790	0	-	0.525253	(0.49,0.53]	chr1	139583	3	CDS	CDS:EXON_MRNA:INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1:ENST00000367728.1:ENST00000344529.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	3.11892	3.235125	3.35133	0.00398244	0.00150139	0.0322851	0.0152367
chr7	99458326	99458355	8947106	0	-	0.586207	(0.53,0.59]	chr7	683033	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000491560.1:ENST00000488775.5:ENST00000394186.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.72478	3.2351	3.74542	0.00324675	2.30148e-4	0.0282494	0.00352524
chr11	67506585	67506675	12428266	0	-	0.655556	(0.59,1]	chr11	965521	2	UTR3	UTR3:EXON_MRNA	CDK2AP2	ENSG00000167797.8	ENST00000301488.8:ENST00000525402.5:ENST00000531178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	1.92828	3.235055	4.54183	0.00759835	0.0070583	0.05015	0.0478044
chr5	115831510	115831608	6777354	0	-	0.408163	(0.39,0.42]	chr5	519981	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATG12	ENSG00000145782.13	ENST00000509910.2:ENST00000505252.1:ENST00000500945.2:ENST00000507793.5:ENST00000513292.5:ENST00000508464.5:ENST00000513322.5:ENST00000511984.5:ENST00000379594.7:ENST00000509598.5:ENST00000505993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.3212	3.23503	4.14886	0.00415881	0.00312058	0.0325842	0.0264364
chr17	41869530	41869587	16543767	0	-	0.473684	(0.455,0.49]	chr17	1356458	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000588779.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	2.65352	3.23488	3.81624	0.00143499	1.48205e-4	0.0147046	0.00269793
chr12	56142577	56142654	12898414	0	+	0.571429	(0.53,0.59]	chr12	1004301	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550878.5:ENST00000548142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.7898	3.234865	3.67993	0.0128364	3.22778e-4	0.0719798	0.0046122
chr2	131114024	131114124	2065385	0	+	0.38	(0.36,0.39]	chr2	194043	56	INTRON	INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.48922	3.2347349999999997	3.98025	0.0110399	0.00881716	0.0652374	0.0562439
chr17	44323283	44323343	16557836	0	-	0.666667	(0.59,1]	chr17	1359362	1	CDS	CDS:EXON_MRNA:INTRON	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5:ENST00000586633.5:ENST00000592857.5:ENST00000591151.1:ENST00000585523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	3.1277	3.234705	3.34171	0.00490589	0.00234977	0.0366648	0.0222173
chr16	31094629	31094729	15916976	0	-	0.7	(0.59,1]	chr16	1275828	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3:ENST00000498155.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.32455	3.2346899999999996	4.14483	0.0520547	0.0183207	0.193787	0.0945306
chr20	32839734	32839795	17755767	0	+	0.639344	(0.59,1]	chr20	1498943	1	CDS	CDS:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.32455	3.2346899999999996	4.14483	0.0520547	0.0183207	0.193787	0.0945306
chr4	10087784	10087862	5311728	0	-	0.602564	(0.59,1]	chr4	427671	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000515743.5:ENST00000502962.5:ENST00000504739.5:ENST00000506246.5:ENST00000505543.5:ENST00000508949.5:ENST00000510848.5:ENST00000509695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.32455	3.2346899999999996	4.14483	0.0520547	0.0183207	0.193787	0.0945306
chr6	3225522	3225618	7571567	0	-	0.59375	(0.59,1]	chr6	577827	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBB2B	ENSG00000137285.11	ENST00000680070.1:ENST00000681757.1:ENST00000681707.1:ENST00000259818.8:ENST00000473006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.32455	3.2346899999999996	4.14483	0.0520547	0.0183207	0.193787	0.0945306
chr15	90979225	90979294	15439274	0	-	0.449275	(0.42,0.455]	chr15	1221375	2	CDS	CDS:UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000559828.1:ENST00000560914.1:ENST00000647331.1:ENST00000556982.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	3.05889	3.2346500000000002	3.41041	0.00524205	1.00299e-4	0.0399155	0.00180803
chr6	83393011	83393110	7262770	0	+	0.585859	(0.53,0.59]	chr6	559694	7	EXON_PSEUDO	EXON_PSEUDO	RP11-378G13.2	ENSG00000219951.4	ENST00000403475.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	40	2	2.99511	3.2346500000000002	3.47419	9.46531e-4	8.75273e-4	0.0106963	0.010681
chr22	30975955	30976053	18344846	0	+	0.357143	(0.33,0.36]	chr22	1559168	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	3.14772	3.234645	3.32157	6.79194e-4	1.77615e-4	0.00876781	0.00287736
chr8	41509782	41509882	9303505	0	+	0.33	(0.29,0.33]	chr8	712044	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA7	ENSG00000147533.17	ENST00000520817.5:ENST00000405786.2:ENST00000357743.9:ENST00000521417.5:ENST00000523128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	3.13212	3.2346	3.33708	0.00551048	2.90171e-5	0.0414592	6.60417e-4
chr7	135674090	135674165	8553483	0	+	0.386667	(0.36,0.39]	chr7	652936	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	54	2	2.66259	3.234225	3.80586	2.53755e-4	9.62552e-6	0.00381647	2.93977e-4
chr11	60850608	60850703	11966832	0	+	0.547368	(0.53,0.59]	chr11	916389	4	UTR3	UTR3:EXON_MRNA	CCDC86	ENSG00000110104.13	ENST00000227520.10:ENST00000535217.1:ENST00000649393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.30988	3.2339650000000004	4.15805	0.00680952	0.00643853	0.0468196	0.0452349
chr1	116544408	116544506	1243640	0	-	0.316327	(0.29,0.33]	chr1	121883	2	CDS	CDS:EXON_MRNA	CD58	ENSG00000116815.16	ENST00000369489.10:ENST00000464088.5:ENST00000457047.6:ENST00000526981.1:ENST00000369487.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	3.20367	3.233945	3.26422	6.11481e-4	2.56761e-4	0.00818575	0.00385453
chr15	58621470	58621545	15310922	0	-	0.426667	(0.42,0.455]	chr15	1208297	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1:ENST00000481164.1:ENST00000475898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	3.19078	3.233925	3.27707	0.00310864	0.00207325	0.0274272	0.0194849
chr19	11435624	11435710	17231115	0	+	0.593023	(0.59,1]	chr19	1419872	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRKCSH	ENSG00000130175.10	ENST00000676823.1:ENST00000591946.5:ENST00000589126.5:ENST00000588269.1:ENST00000587509.5:ENST00000593104.5:ENST00000593053.1:ENST00000592741.5:ENST00000677123.1:ENST00000591462.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	214	2	2.83882	3.2338500000000003	3.62888	3.31383e-4	5.18702e-7	0.00505787	2.28521e-5
chr2	171726193	171726293	2207847	0	+	0.41	(0.39,0.42]	chr2	202069	1	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000435234.5:ENST00000482454.5:ENST00000470286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	1.46372	3.233815	5.00391	0.0529342	9.12714e-5	0.184259	0.00182992
chr12	110440311	110440388	13537494	0	-	0.324675	(0.29,0.33]	chr12	1064883	1	CDS	CDS:EXON_MRNA:INTRON	RP11-478C19.2:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000426440.5:ENST00000476566.1:ENST00000547365.1:ENST00000548878.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	19	2	3.13212	3.2337800000000003	3.33544	0.00551048	0.0016889	0.0414592	0.0165476
chr17	49710331	49710423	16583002	0	-	0.293478	(0.29,0.33]	chr17	1362589	1	UTR3	UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.13212	3.2337800000000003	3.33544	0.00551048	0.0016889	0.0414592	0.0165476
chr5	88299022	88299121	6077726	0	+	0.292929	(0.29,0.33]	chr5	476644	28	INTRON	INTRON	TMEM161B-AS1	ENSG00000247828.8	ENST00000658478.1:ENST00000501869.7:ENST00000654762.1:ENST00000504922.5:ENST00000661627.1:ENST00000668471.1:ENST00000671394.1:ENST00000501715.6:ENST00000657972.1:ENST00000513694.2:ENST00000510087.6:ENST00000657617.1:ENST00000653183.1	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	3.13212	3.2337800000000003	3.33544	0.00551048	0.0016889	0.0414592	0.0165476
chr7	74759928	74760024	8338272	0	+	0.302083	(0.29,0.33]	chr7	635528	5	UTR3	UTR3:EXON_MRNA	GTF2I	ENSG00000263001.7	ENST00000650807.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000621040.4:ENST00000614048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	3.13212	3.2337800000000003	3.33544	0.00551048	0.0016889	0.0414592	0.0165476
chr3	184181911	184181982	3948230	0	+	0.577465	(0.53,0.59]	chr3	332031	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000411763.6:ENST00000439647.5:ENST00000432591.5:ENST00000621863.4:ENST00000461733.5:ENST00000476434.1:ENST00000463935.1:ENST00000480260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.0289	3.233765	4.43863	0.0373899	0.00254763	0.146698	0.0233955
chr7	92126339	92126427	8922233	0	-	0.352273	(0.33,0.36]	chr7	680659	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	80	2	2.17859	3.233745	4.2889	0.00149866	1.2006e-8	0.0159742	9.06312e-7
chr1	42835095	42835154	162162	0	+	0.457627	(0.455,0.49]	chr1	20389	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	2.40664	3.2337350000000002	4.06083	0.0123662	3.56832e-5	0.0705839	7.81595e-4
chr2	73251225	73251294	1885492	0	+	0.536232	(0.53,0.59]	chr2	178580	1	CDS	CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	3.11992	3.233635	3.34735	1.46925e-4	1.09102e-4	0.0026854	0.00194222
chr2	26236921	26236988	2566119	0	-	0.373134	(0.36,0.39]	chr2	230632	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	2.56787	3.233525	3.89918	4.4684e-4	1.0624e-4	0.00601445	0.00205241
chr15	64529579	64529671	15341630	0	-	0.467391	(0.455,0.49]	chr15	1211081	11	EXON_PSEUDO	EXON_PSEUDO	GAPDHP61	ENSG00000248415.1	ENST00000507324.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	1.95898	3.2335149999999997	4.50805	0.047107	0.00122223	0.172269	0.0135383
chr1	160291873	160291929	1328689	0	-	0.553571	(0.53,0.59]	chr1	135975	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.65894	3.2335	3.80806	0.0193255	1.65022e-4	0.0943643	0.00269147
chr9	35705749	35705800	10639537	0	-	0.54902	(0.53,0.59]	chr9	805015	1	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000486788.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	33	2	2.65894	3.2335	3.80806	0.0193255	1.65022e-4	0.0943643	0.00269147
chr2	61493893	61493992	2690516	0	-	0.444444	(0.42,0.455]	chr2	240373	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000460037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	54	2	2.37038	3.233495	4.09661	7.44716e-4	2.79795e-5	0.00891589	7.07527e-4
chr16	71922626	71922680	15733862	0	+	0.481481	(0.455,0.49]	chr16	1253429	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000537571.1:ENST00000545388.2:ENST00000538709.1:ENST00000536027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.10347	3.23327	4.36307	0.0313707	0.00218641	0.13127	0.0208941
chr21	8405459	8405559	18041585	0	+	0.53	(0.49,0.53]	chr21	1530864	1	SS3_PROX	SS3_PROX:INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	3	25	2	2.38935	3.23327	4.07719	0.0074411	0.00488689	0.0492519	0.0376157
chr6	31520045	31520127	7661060	0	-	0.487805	(0.455,0.49]	chr6	584668	2	EXON_PSEUDO	EXON_PSEUDO	PPIAP9	ENSG00000219797.2	ENST00000403866.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.10347	3.23327	4.36307	0.0313707	0.00218641	0.13127	0.0208941
chr6	26234739	26234833	7647250	0	-	0.574468	(0.53,0.59]	chr6	582563	5	CDS	CDS:EXON_MRNA	H1-3	ENSG00000124575.7	ENST00000244534.7	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.92962	3.2331250000000002	3.53663	0.0012954	4.77731e-5	0.0136936	0.00109049
chr6	15263054	15263154	7064339	0	+	0.51	(0.49,0.53]	chr6	540710	137	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	1.90685	3.2330699999999997	4.55929	0.0534351	0.00116196	0.184995	0.0130851
chr11	95862280	95862366	12550318	0	-	0.383721	(0.36,0.39]	chr11	973885	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675438.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.1437	3.233035	4.32237	0.0340515	0.00273222	0.141465	0.0237575
chr8	23575267	23575365	9230752	0	+	0.367347	(0.36,0.39]	chr8	706561	36	UTR3	UTR3:EXON_MRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.1437	3.233035	4.32237	0.0340515	0.00273222	0.141465	0.0237575
chr3	98515832	98515923	4318874	0	-	0.296703	(0.29,0.33]	chr3	360204	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CLDND1	ENSG00000080822.17	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000506885.5:ENST00000513873.1:ENST00000510545.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.22218	3.233025	4.24387	0.023782	0.00263476	0.109413	0.0239118
chr14	102039411	102039478	14495782	0	+	0.41791	(0.39,0.42]	chr14	1133224	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	2.61392	3.232995	3.85207	0.0017565	1.28587e-4	0.0171455	0.00241206
chr2	26135312	26135410	1685703	0	+	0.244898	[0,0.29]	chr2	164739	4	UTR3	UTR3:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	3.18016	3.232995	3.28583	0.00346525	8.52953e-5	0.0293796	0.0016017
chr19	58556304	58556379	17643532	0	-	0.44	(0.42,0.455]	chr19	1491155	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2M	ENSG00000130725.8	ENST00000253023.8:ENST00000595957.5:ENST00000596985.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.75179	3.23272	3.71365	8.66526e-4	2.63375e-4	0.0100799	0.00427022
chr2	61478819	61478892	2690345	0	-	0.369863	(0.36,0.39]	chr2	240317	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	2.76778	3.2324450000000002	3.69711	0.00365703	1.63058e-5	0.0307238	4.12921e-4
chr7	66554063	66554160	8836649	0	-	0.463918	(0.455,0.49]	chr7	674887	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_PROX:INTRON	GS1-124K5.12:RP4-756H11.5	ENSG00000229180.7:ENSG00000275400.1	ENST00000639011.1:ENST00000649635.1:ENST00000638711.1:ENST00000622243.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	4	45	2	3.12843	3.23219	3.33595	0.00392855	2.70224e-5	0.0322851	6.22285e-4
chrX	49572163	49572224	18695072	0	+	0.590164	(0.59,1]	chrX	1594998	2	CDS	CDS:EXON_MRNA	GAGE12G	ENSG00000215269.5	ENST00000445148.1	protein_coding	protein_coding	protein_coding	protein_coding	6	101	2	1.89227	3.232095	4.57192	0.012536	4.93335e-6	0.0714812	1.5336e-4
chr15	29701497	29701594	15183787	0	-	0.268041	[0,0.29]	chr15	1195074	23	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	3.0735	3.232055	3.39061	0.00785095	0.00134497	0.0520241	0.0140037
chr1	6622035	6622135	19563	0	+	0.42	(0.39,0.42]	chr1	3165	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.34349	3.232045	4.1206	0.0169272	0.00597537	0.0890655	0.0428562
chr17	41767378	41767445	16543111	0	-	0.641791	(0.59,1]	chr17	1356301	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.11894	3.2319050000000002	4.34487	0.0293157	0.0123678	0.128478	0.0705839
chr6	50913165	50913256	7731634	0	-	0.593407	(0.59,1]	chr6	593253	6	EXON_PSEUDO	EXON_PSEUDO	FTH1P5	ENSG00000230204.1	ENST00000425761.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	94	2	2.58269	3.23162	3.88055	0.0067313	1.27063e-5	0.0461258	3.34717e-4
chr6	65311098	65311198	7780018	0	-	0.28	[0,0.29]	chr6	596129	82	INTRON	INTRON	EYS	ENSG00000188107.15	ENST00000503581.6:ENST00000370621.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.99212	3.2315	3.47088	0.0069187	0.0015572	0.0473262	0.0165415
chr17	75262803	75262867	16354166	0	+	0.40625	(0.39,0.42]	chr17	1327172	1	CDS	CDS:UTR3:EXON_MRNA	MRPS7	ENSG00000125445.11	ENST00000579761.5:ENST00000245539.11:ENST00000579002.5:ENST00000583407.1:ENST00000577767.1:ENST00000581993.5:ENST00000584678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.18155	3.231415	4.28128	0.0283931	0.00342611	0.127654	0.0283456
chr17	39423385	39423445	16536002	0	-	0.4	(0.39,0.42]	chr17	1354035	2	CDS	CDS:UTR3:EXON_MRNA	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.13132	3.2313099999999997	4.3313	0.02908	0.00209984	0.127648	0.0204266
chr9	131198415	131198515	10496371	0	+	0.59	(0.53,0.59]	chr9	793351	13	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	255	2	3.20714	3.231235	3.25533	1.81647e-7	9.3394e-8	1.05451e-5	5.269e-6
chr3	143056549	143056648	3793631	0	+	0.333333	(0.33,0.36]	chr3	323977	2	UTR3	UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	2.68374	3.23123	3.77872	0.00194492	9.40708e-6	0.0193053	2.61824e-4
chr2	30259257	30259354	1706801	0	+	0.587629	(0.53,0.59]	chr2	167573	18	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.45844	3.231185	4.00393	0.0108084	0.00930921	0.064368	0.0587563
chr19	13154719	13154815	17239966	0	+	0.552083	(0.53,0.59]	chr19	1421276	10	UTR3	UTR3:EXON_MRNA	IER2	ENSG00000160888.7	ENST00000292433.4:ENST00000588173.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.16037	3.23116	4.30195	0.0254312	0.00421989	0.117089	0.0328662
chr10	59790334	59790433	11517202	0	-	0.575758	(0.53,0.59]	chr10	877718	17	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	1.90953	3.231135	4.55274	0.0517711	0.00167999	0.193577	0.0164993
chr17	8475803	8475903	16432964	0	-	0.55	(0.53,0.59]	chr17	1340590	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	1.90953	3.231135	4.55274	0.0517711	0.00167999	0.193577	0.0164993
chr5	97022299	97022391	6118809	0	+	0.423913	(0.42,0.455]	chr5	478845	1	CDS	CDS:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.91373	3.231055	3.54838	0.00892357	5.9986e-4	0.0567495	0.0075062
chr5	134606949	134607049	6846380	0	-	0.45	(0.42,0.455]	chr5	523855	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000508363.5:ENST00000502539.5:ENST00000439578.5:ENST00000509937.5:ENST00000509730.5:ENST00000503318.5:ENST00000505758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.91373	3.231055	3.54838	0.00892357	5.9986e-4	0.0567495	0.0075062
chr12	56612056	56612151	13351841	0	-	0.547368	(0.53,0.59]	chr12	1051683	4	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1	protein_coding	protein_coding	protein_coding	protein_coding	6	74	2	3.18707	3.230835	3.2746	3.55681e-4	1.13758e-5	0.00539248	3.07542e-4
chr7	30922065	30922147	8206190	0	+	0.634146	(0.59,1]	chr7	626028	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-877J2.1:AQP1	ENSG00000250424.4:ENSG00000240583.14	ENST00000509504.2:ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000482461.1:ENST00000409899.5:ENST00000409611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	80	2	2.24689	3.23067	4.21445	0.00890458	4.37862e-5	0.0565003	0.00101529
chr6	125263251	125263347	7383897	0	+	0.385417	(0.36,0.39]	chr6	566005	4	UTR3	UTR3:EXON_MRNA	TPD52L1	ENSG00000111907.21	ENST00000304877.17:ENST00000368402.9:ENST00000368388.6:ENST00000534000.6:ENST00000392482.6:ENST00000571678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	3.12859	3.2305	3.33241	0.00193631	1.08013e-5	0.0192272	2.93191e-4
chrX	153723152	153723244	19273847	0	-	0.478261	(0.455,0.49]	chrX	1637391	1	CDS_START	CDS_START:CDS:EXON_MRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000442093.5:ENST00000429550.5:ENST00000416815.5:ENST00000423827.5:ENST00000430088.1:ENST00000645802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.99697	3.23043	3.46389	9.57891e-4	9.14164e-4	0.0110519	0.0107247
chr2	200816324	200816390	2309316	0	+	0.333333	(0.33,0.36]	chr2	208930	1	CDS	CDS:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000450637.5:ENST00000410110.6:ENST00000452206.5:ENST00000409600.6:ENST00000409226.5:ENST00000452790.6:ENST00000419090.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.13748	3.23009	3.3227	0.00379835	0.00222616	0.0307587	0.0211992
chr4	152528074	152528174	5739866	0	-	0.34	(0.33,0.36]	chr4	453474	383	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.13748	3.23009	3.3227	0.00379835	0.00222616	0.0307587	0.0211992
chr1	21842001	21842071	890824	0	-	0.642857	(0.59,1]	chr1	92316	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.71222	3.230085	3.74795	0.00398753	4.30112e-4	0.031888	0.00620274
chr3	9405743	9405842	3297605	0	+	0.444444	(0.42,0.455]	chr3	289407	74	INTRON	INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000684606.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.99666	3.2300750000000003	3.46349	0.00104775	9.0025e-4	0.0123035	0.0102618
chr17	75318271	75318369	16683184	0	-	0.530612	(0.53,0.59]	chr17	1373169	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.37399	3.22999	4.08599	0.0126178	3.38473e-5	0.0717599	7.45971e-4
chr1	29116818	29116915	121617	0	+	0.443299	(0.42,0.455]	chr1	14751	1	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	109	2	2.83168	3.22971	3.62774	5.26576e-6	3.46808e-6	1.61486e-4	1.25827e-4
chr22	16658407	16658507	18286303	0	+	0.27	[0,0.29]	chr22	1551704	47	INTRON	INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	13	2	2.80134	3.22962	3.6579	0.0197988	0.0049344	0.0983378	0.0379087
chr1	43360498	43360593	164215	0	+	0.536842	(0.53,0.59]	chr1	20855	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000478882.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	3.1234	3.229545	3.33569	0.00390623	1.57373e-4	0.0322851	0.00260854
chr1	161171076	161171176	498927	0	+	0.55	(0.53,0.59]	chr1	53963	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPOX	ENSG00000143224.18	ENST00000352210.9:ENST00000367999.9:ENST00000497522.5:ENST00000651150.1:ENST00000652182.1:ENST00000652473.1:ENST00000544598.5:ENST00000495483.5:ENST00000535223.5:ENST00000462866.5:ENST00000652103.1:ENST00000650741.1:ENST00000537523.5:ENST00000541818.1:ENST00000652100.1:ENST00000537829.1:ENST00000466452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	3.1234	3.229545	3.33569	0.00390623	1.57373e-4	0.0322851	0.00260854
chr11	62713518	62713617	12410545	0	-	0.50505	(0.49,0.53]	chr11	961490	10	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.03065	3.2292750000000003	4.4279	0.0189484	0.00196987	0.0958835	0.0193972
chr7	158650901	158650972	9158697	0	-	0.492958	(0.49,0.53]	chr7	699521	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.03065	3.2292750000000003	4.4279	0.0189484	0.00196987	0.0958835	0.0193972
chr11	45881010	45881107	11933380	0	+	0.515464	(0.49,0.53]	chr11	912103	2	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000417225.6:ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.56183	3.229265	3.8967	0.0261296	0.0128791	0.118976	0.0725185
chr17	18244584	18244681	16150374	0	+	0.525773	(0.49,0.53]	chr17	1302012	8	UTR3	UTR3:EXON_MRNA	LLGL1	ENSG00000131899.11	ENST00000316843.9:ENST00000479155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.56183	3.229265	3.8967	0.0261296	0.0128791	0.118976	0.0725185
chr19	12669353	12669403	17469936	0	-	0.52	(0.49,0.53]	chr19	1462829	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	CTD-2192J16.24:CTD-2192J16.27:WDR83OS	ENSG00000269590.1:ENSG00000285589.1:ENSG00000105583.11	ENST00000597961.1:ENST00000648033.1:ENST00000596731.7:ENST00000222190.9:ENST00000598732.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.56183	3.229265	3.8967	0.0261296	0.0128791	0.118976	0.0725185
chr2	195716820	195716912	2290738	0	+	0.521739	(0.49,0.53]	chr2	207616	3	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.56183	3.229265	3.8967	0.0261296	0.0128791	0.118976	0.0725185
chr2	218274589	218274687	3186634	0	-	0.520408	(0.49,0.53]	chr2	279898	5	UTR3	UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.56183	3.229265	3.8967	0.0261296	0.0128791	0.118976	0.0725185
chr22	19792382	19792471	18296217	0	+	0.505618	(0.49,0.53]	chr22	1552954	2	EXON_PSEUDO	EXON_PSEUDO	AC000089.3	ENSG00000235776.2	ENST00000424559.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.56183	3.229265	3.8967	0.0261296	0.0128791	0.118976	0.0725185
chr10	80157640	80157701	11593221	0	-	0.52459	(0.49,0.53]	chr10	883027	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000463340.1:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.51671	3.22924	3.94177	0.0104929	0.00768763	0.063428	0.050396
chr19	11123258	11123344	17230217	0	+	0.651163	(0.59,1]	chr19	1419618	2	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	7	142	2	2.81599	3.2292	3.64241	3.72148e-4	9.04232e-6	0.00558577	2.53593e-4
chr1	2308341	2308439	7389	0	+	0.5	(0.49,0.53]	chr1	1667	17	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr1	212047150	212047212	701142	0	+	0.5	(0.49,0.53]	chr1	71116	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr10	102109981	102110043	11668515	0	-	0.516129	(0.49,0.53]	chr10	889666	2	CDS	CDS:EXON_MRNA	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr12	122093062	122093162	13122633	0	+	0.51	(0.49,0.53]	chr12	1024773	134	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr14	20457122	20457140	14171283	0	+	0.5	(0.49,0.53]	chr14	1109115	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1:ENST00000557365.1:ENST00000438886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr15	34240660	34240744	15203799	0	-	0.511905	(0.49,0.53]	chr15	1196741	1	CDS	CDS:EXON_MRNA	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000558950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr4	1026122	1026219	4678992	0	+	0.494845	(0.49,0.53]	chr4	387668	9	UTR3	UTR3:EXON_MRNA	FGFRL1	ENSG00000127418.15	ENST00000398484.6:ENST00000510644.6:ENST00000264748.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr6	41098608	41098708	7148322	0	+	0.51	(0.49,0.53]	chr6	551226	13	UTR3	UTR3:EXON_MRNA	NFYA	ENSG00000001167.15	ENST00000341376.11	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr6	43520948	43521048	7158478	0	+	0.5	(0.49,0.53]	chr6	553260	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	POLR1C	ENSG00000171453.20	ENST00000646188.1:ENST00000481352.6:ENST00000372344.6:ENST00000607635.2:ENST00000646433.1:ENST00000646700.1:ENST00000304004.7:ENST00000643799.1:ENST00000642195.1:ENST00000645141.1:ENST00000643341.1:ENST00000455605.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chrX	54810016	54810114	18705001	0	+	0.520408	(0.49,0.53]	chrX	1596147	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000463787.5:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1:ENST00000485483.1:ENST00000497484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.38097	3.2290799999999997	4.07719	0.0425419	0.0074411	0.167547	0.0492519
chr20	56369964	56370060	18019685	0	-	0.395833	(0.39,0.42]	chr20	1527153	7	UTR3	UTR3:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	3.05461	3.22888	3.40315	8.55091e-4	4.09541e-6	0.0105173	1.31567e-4
chrX	109054041	109054141	18819068	0	+	0.4	(0.39,0.42]	chrX	1603841	1	PRIMIRNA	PRIMIRNA	ENSG00000275110	ENSG00000275110.1	ENST00000611066.1	miRNA	primary_miRNA	miRNA	primary_miRNA	5	46	2	2.92895	3.22888	3.52881	3.36969e-4	5.61812e-5	0.00475537	0.00124771
chr13	28664508	28664569	13661150	0	+	0.295082	(0.29,0.33]	chr13	1076726	1	CDS	CDS:UTR5:EXON_MRNA	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.00201	3.228675	4.45534	0.0134564	0.00110984	0.0744942	0.0127344
chr7	56102866	56102938	8827425	0	-	0.527778	(0.49,0.53]	chr7	673692	1	CDS	CDS:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	84	2	3.14314	3.22865	3.31416	9.45216e-5	2.68234e-6	0.00188394	9.20903e-5
chr22	31619611	31619711	18473620	0	-	0.55	(0.53,0.59]	chr22	1576721	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PISD	ENSG00000241878.11	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.63316	3.228615	3.82407	0.0179666	0.00474401	0.0918323	0.0361423
chr3	195783653	195783753	4661103	0	-	0.56	(0.53,0.59]	chr3	385270	50	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.63316	3.228615	3.82407	0.0179666	0.00474401	0.0918323	0.0361423
chr5	133975870	133975945	6843304	0	-	0.533333	(0.53,0.59]	chr5	523578	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000489906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.63316	3.228615	3.82407	0.0179666	0.00474401	0.0918323	0.0361423
chr17	50134034	50134134	16584273	0	-	0.45	(0.42,0.455]	chr17	1362799	4	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	2.66618	3.228605	3.79103	2.64991e-4	8.61353e-6	0.004287	2.43348e-4
chr1	179846170	179846264	1394647	0	-	0.489362	(0.455,0.49]	chr1	141291	1	CDS	CDS:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.43664	3.2285200000000005	4.0204	0.00736097	0.00394058	0.0490627	0.0315828
chr1	153663075	153663133	1298412	0	-	0.568965	(0.53,0.59]	chr1	130382	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	2.58886	3.228475	3.86809	7.82255e-4	1.18973e-4	0.00975183	0.00207755
chr4	39777681	39777745	4802002	0	+	0.4375	(0.42,0.455]	chr4	396192	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.7523	3.228405	3.70451	0.0153283	2.72131e-4	0.0828908	0.00404713
chr17	82726832	82726911	16385151	0	+	0.556962	(0.53,0.59]	chr17	1332815	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5:ENST00000576363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	1.89806	3.22833	4.5586	0.0532477	0.00161229	0.184818	0.0169168
chr6	32119048	32119141	7664437	0	-	0.55914	(0.53,0.59]	chr6	586002	2	CDS	CDS:EXON_MRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000475705.1:ENST00000492342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	1.89806	3.22833	4.5586	0.0532477	0.00161229	0.184818	0.0169168
chr1	19199650	19199702	876985	0	-	0.538462	(0.53,0.59]	chr1	90408	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.14885	3.2283049999999998	4.30776	0.0262993	0.00407289	0.117164	0.0324137
chr5	115625884	115625976	6777109	0	-	0.630435	(0.59,1]	chr5	519931	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000456936.4:ENST00000503010.1:ENST00000508420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	78	2	2.78953	3.228285	3.66704	9.28839e-4	6.16458e-4	0.0105151	0.00822794
chr1	196675988	196676065	640836	0	+	0.376623	(0.36,0.39]	chr1	64437	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.48922	3.228195	3.96717	0.0110399	6.17763e-5	0.0652374	0.00122919
chr6	69697562	69697641	7787968	0	-	0.379747	(0.36,0.39]	chr6	596301	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000651675.1:ENST00000649934.3:ENST00000647655.1:ENST00000648265.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000649370.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648210.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650473.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.48922	3.228195	3.96717	0.0110399	6.17763e-5	0.0652374	0.00122919
chr19	10283556	10283633	17224623	0	+	0.701299	(0.59,1]	chr19	1418496	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM1	ENSG00000090339.9	ENST00000423829.2:ENST00000264832.8:ENST00000588645.1:ENST00000585443.1:ENST00000592686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.59461	3.2279999999999998	3.86139	0.0259455	2.54973e-4	0.117079	0.00417441
chr17	78164184	78164274	16367656	0	+	0.611111	(0.59,1]	chr17	1329541	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C17orf99	ENSG00000187997.11	ENST00000340363.9:ENST00000591995.1:ENST00000451352.3:ENST00000586029.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.9891200000000002	3.22786	3.4666	0.00823979	0.00133574	0.0540283	0.0139317
chr12	53299345	53299398	12885769	0	+	0.566038	(0.53,0.59]	chr12	1002266	1	UTR3	UTR3:EXON_MRNA	PFDN5:RP11-680A11.7	ENSG00000123349.15:ENSG00000288663.1	ENST00000551018.5:ENST00000550069.2:ENST00000676527.1:ENST00000677326.1:ENST00000549759.2:ENST00000677982.1:ENST00000628881.2:ENST00000679196.1:ENST00000676940.1:ENST00000676632.1:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000552742.6:ENST00000677712.1:ENST00000678985.1:ENST00000552548.6:ENST00000550964.6:ENST00000548984.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	3.06939	3.2277899999999997	3.38619	6.54756e-4	2.01278e-5	0.00860229	4.89797e-4
chr1	207677388	207677478	689155	0	+	0.455556	(0.455,0.49]	chr1	69971	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CR1L	ENSG00000197721.17	ENST00000531844.5:ENST00000508064.7:ENST00000430248.5:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	3.01521	3.227735	3.44026	8.71641e-5	6.35543e-5	0.00177086	0.00124813
chr22	30977724	30977822	18344864	0	+	0.418367	(0.39,0.42]	chr22	1559168	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	2.98752	3.2277199999999997	3.46792	2.91053e-4	7.10972e-5	0.00462551	0.00136974
chr15	43793972	43794068	14896755	0	+	0.479167	(0.455,0.49]	chr15	1171352	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERF2	ENSG00000140264.21	ENST00000381359.5:ENST00000630046.2:ENST00000249786.9:ENST00000409646.5:ENST00000409960.6:ENST00000445816.5:ENST00000409291.5:ENST00000339624.9:ENST00000409617.6:ENST00000448830.2:ENST00000403425.5:ENST00000402131.5:ENST00000430901.1:ENST00000409614.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	39	2	2.64241	3.2275799999999997	3.81275	0.0138827	2.78671e-4	0.0760883	0.00412347
chr1	202005974	202006060	662125	0	+	0.453488	(0.42,0.455]	chr1	66476	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNPEP	ENSG00000176393.11	ENST00000295640.9:ENST00000367286.7:ENST00000471105.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.7523	3.227515	3.70273	0.0215502	0.0153283	0.102904	0.0828908
chr11	5440669	5440762	12242506	0	-	0.451613	(0.42,0.455]	chr11	946185	1	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5:OR51I1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8:ENSG00000167359.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1:ENST00000380211.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	14	2	2.7523	3.227515	3.70273	0.0215502	0.0153283	0.102904	0.0828908
chr12	122547472	122547530	13123932	0	+	0.431034	(0.42,0.455]	chr12	1025027	2	CDS	CDS:EXON_MRNA	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.7523	3.227515	3.70273	0.0215502	0.0153283	0.102904	0.0828908
chr22	37878071	37878171	18364685	0	+	0.47	(0.455,0.49]	chr22	1562205	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	7	63	2	2.45892	3.2269550000000002	3.99499	8.02402e-4	1.91791e-6	0.00943079	7.6073e-5
chr16	85674817	85674916	15798101	0	+	0.555556	(0.53,0.59]	chr16	1257094	24	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	2.38191	3.226935	4.07196	0.00477439	1.26681e-6	0.0368489	4.89488e-5
chr5	86884230	86884323	6679349	0	-	0.473118	(0.455,0.49]	chr5	515299	1	EXON_PSEUDO	EXON_PSEUDO	CTD-2161E19.1	ENSG00000242477.1	ENST00000486625.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	43	2	3.20468	3.2269050000000004	3.24913	0.00239443	6.38295e-5	0.0225356	0.00125289
chr2	86774100	86774199	1928596	0	+	0.252525	[0,0.29]	chr2	181779	8	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.3458	3.22663	4.10746	0.0116272	2.65773e-5	0.0685835	6.14226e-4
chr1	155300097	155300188	1307640	0	-	0.582418	(0.53,0.59]	chr1	132229	1	CDS_START	CDS_START:CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7:ENST00000434082.3	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	3.06939	3.2264299999999997	3.38347	0.00132446	6.54756e-4	0.0138834	0.00860229
chr16	3189548	3189648	15497113	0	+	0.59	(0.53,0.59]	chr16	1228494	4	SS3_PROX	SS3_PROX:INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	3	40	2	2.64475	3.2264049999999997	3.80806	0.00453071	1.65022e-4	0.0351187	0.00269147
chr17	46030890	46030987	16565485	0	-	0.57732000000000006	(0.53,0.59]	chr17	1360684	11	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	2.8006	3.2264	3.6522	0.00233666	2.31822e-5	0.0221314	5.49766e-4
chr2	15461200	15461268	2529094	0	-	0.455882	(0.455,0.49]	chr2	227468	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.20348	3.226305	3.24913	0.00239443	3.27782e-4	0.0225356	0.0046686
chr3	141745574	141745674	3788833	0	+	0.34	(0.33,0.36]	chr3	323389	4	UTR3	UTR3:EXON_MRNA:INTRON	RNF7:RP11-271K21.13	ENSG00000114125.14:ENSG00000285558.1	ENST00000480908.1:ENST00000393000.3:ENST00000273480.4:ENST00000477012.5:ENST00000648835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	46	2	2.6254	3.22614	3.82688	0.00106803	6.67671e-6	0.0124232	1.97539e-4
chr10	119147774	119147860	11717741	0	-	0.430233	(0.42,0.455]	chr10	893885	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFXN4	ENSG00000183605.17	ENST00000355697.7:ENST00000490417.6:ENST00000484960.5:ENST00000461438.5:ENST00000369131.8:ENST00000466218.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr11	9606515	9606609	11793851	0	+	0.446809	(0.42,0.455]	chr11	903124	5	EXON_PSEUDO	EXON_PSEUDO	RPL23AP65	ENSG00000243964.1	ENST00000475608.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr11	12940485	12940583	11811248	0	+	0.438776	(0.42,0.455]	chr11	904406	34	UTR3	UTR3:EXON_MRNA	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000526600.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr11	47724700	47724778	12388872	0	-	0.423077	(0.42,0.455]	chr11	957307	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FNBP4	ENSG00000109920.13	ENST00000263773.10:ENST00000532646.6:ENST00000530207.1:ENST00000525792.5:ENST00000531394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr12	989808	989889	13169608	0	-	0.432099	(0.42,0.455]	chr12	1030149	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RAD52:RP11-359B12.2	ENSG00000002016.18:ENSG00000250132.6	ENST00000430095.6:ENST00000503602.6:ENST00000545629.5:ENST00000539259.1:ENST00000543290.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr13	72775292	72775375	14071307	0	-	0.421687	(0.42,0.455]	chr13	1102077	2	CDS	CDS:EXON_MRNA	DIS3	ENSG00000083520.15	ENST00000377767.9:ENST00000377780.8:ENST00000545453.5:ENST00000490646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr17	64747263	64747339	16641046	0	-	0.447368	(0.42,0.455]	chr17	1368651	1	EXON_PSEUDO	EXON_PSEUDO	MICOS10P2	ENSG00000270714.1	ENST00000604003.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr18	180287	180339	16715880	0	+	0.442308	(0.42,0.455]	chr18	1379100	2	CDS	CDS:UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr2	131361279	131361378	2876433	0	-	0.454545	(0.42,0.455]	chr2	257582	9	UTR3	UTR3:EXON_MRNA	RAB6D	ENSG00000233087.8	ENST00000623617.3	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr2	171483279	171483378	2207035	0	+	0.434343	(0.42,0.455]	chr2	201956	23	UTR3	UTR3:EXON_MRNA	DCAF17	ENSG00000115827.14	ENST00000375255.8:ENST00000539783.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr2	241315569	241315635	3251465	0	-	0.454545	(0.42,0.455]	chr2	287161	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000428482.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr22	36488938	36489035	18499397	0	-	0.443299	(0.42,0.455]	chr22	1578355	19	UTR3	UTR3:EXON_MRNA	FOXRED2	ENSG00000100350.15	ENST00000397224.9:ENST00000216187.10:ENST00000366463.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr5	131672166	131672261	6829990	0	-	0.421053	(0.42,0.455]	chr5	522333	8	CDS	CDS:EXON_MRNA:INTRON	CTC-432M15.3:FNIP1	ENSG00000273217.1:ENSG00000217128.12	ENST00000514667.1:ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000615660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr5	138325814	138325904	6861772	0	-	0.422222	(0.42,0.455]	chr5	525075	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5:ENST00000510119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr6	154830921	154830994	7502017	0	+	0.438356	(0.42,0.455]	chr6	572929	1	CDS	CDS:EXON_MRNA	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr9	125559632	125559720	10857528	0	-	0.420455	(0.42,0.455]	chr9	822466	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPKAP1	ENSG00000119487.17	ENST00000373511.6:ENST00000394063.5:ENST00000373503.7:ENST00000265960.8:ENST00000350766.7:ENST00000373498.5:ENST00000497932.5:ENST00000420643.5:ENST00000473837.5:ENST00000394060.7:ENST00000427078.5:ENST00000437973.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.36247	3.226135	4.0898	0.0462889	0.00698074	0.176878	0.0473262
chr7	92118519	92118615	8922152	0	-	0.364583	(0.36,0.39]	chr7	680643	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	94	2	2.78698	3.226105	3.66523	3.67531e-4	4.53044e-8	0.00552242	2.82703e-6
chr13	21140822	21140922	13633421	0	+	0.52	(0.49,0.53]	chr13	1074757	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SAP18	ENSG00000150459.12	ENST00000621421.4:ENST00000382533.8:ENST00000607003.5:ENST00000485646.1:ENST00000492245.5:ENST00000450573.5:ENST00000467636.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.69746	3.2260299999999997	3.7546	0.00380414	2.09468e-4	0.0317723	0.00327655
chr6	7888704	7888776	7588045	0	-	0.694444	(0.59,1]	chr6	578874	1	CDS	CDS:UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2:ENST00000473453.2:ENST00000475802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	94	2	2.92097	3.22593	3.53089	0.0102634	1.7784e-5	0.0628742	4.43546e-4
chr11	8684845	8684901	11790610	0	+	0.464286	(0.455,0.49]	chr11	902654	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1:ENST00000530913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	244	2	2.80596	3.22585	3.64574	1.24043e-6	1.25699e-9	5.29298e-5	1.28718e-7
chr1	165654278	165654351	515892	0	+	0.506849	(0.49,0.53]	chr1	55485	1	CDS	CDS:EXON_MRNA	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000494074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	60	2	2.61847	3.22583	3.83319	1.68264e-4	1.34601e-4	0.00274115	0.00249552
chr19	34227688	34227788	17299079	0	+	0.38	(0.36,0.39]	chr19	1429709	4	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	224	2	2.84594	3.225765	3.60559	1.56069e-6	1.56386e-10	5.81479e-5	2.24824e-8
chr1	110023447	110023545	401940	0	+	0.530612	(0.53,0.59]	chr1	39336	19	UTR3	UTR3:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.47	3.225575	3.98115	0.0089333	6.28226e-5	0.0567495	0.00124286
chr3	128479525	128479625	4441105	0	-	0.29	[0,0.29]	chr3	368923	2	UTR3	UTR3:EXON_MRNA	GATA2	ENSG00000179348.12	ENST00000341105.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	3.08203	3.22523	3.36843	7.1311e-4	3.09234e-4	0.0085671400000000009	0.00477565
chr11	46759268	46759355	12383643	0	-	0.436782	(0.42,0.455]	chr11	956034	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000527333.5:ENST00000526876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.60504	3.2252099999999997	3.84538	0.00201537	1.2691e-4	0.0197874	0.00219756
chr17	39996182	39996260	16222573	0	+	0.525641	(0.49,0.53]	chr17	1311754	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	2.38097	3.2251950000000003	4.06942	0.0425419	3.44689e-5	0.167547	7.57659e-4
chr9	76399388	76399487	10312902	0	+	0.555556	(0.53,0.59]	chr9	776488	8	EXON_PSEUDO	EXON_PSEUDO	RPSAP9	ENSG00000234618.1	ENST00000418207.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	41	2	2.45844	3.225175	3.99191	0.00930921	5.86351e-5	0.0587563	0.00129243
chr5	80651258	80651356	6667608	0	-	0.367347	(0.36,0.39]	chr5	514741	13	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	347	2476	2	3.00894	3.22516	3.44138	7.71745e-10	1.22757e-12	8.32554e-8	2.96934e-10
chr17	38762453	38762505	16217875	0	+	0.538462	(0.53,0.59]	chr17	1310759	1	CDS	CDS:UTR3:EXON_MRNA	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000613870.4:ENST00000620309.4:ENST00000614132.4:ENST00000618159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	41	2	3.21941	3.22513	3.2308500000000002	0.00266171	2.81517e-4	0.0240332	0.00415519
chr5	134661398	134661492	6230189	0	+	0.468085	(0.455,0.49]	chr5	485158	4	CDS	CDS:EXON_MRNA	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	2.63718	3.224965	3.81275	0.0138827	8.57044e-5	0.0760883	0.00160731
chr2	85320983	85321082	2770120	0	-	0.464646	(0.455,0.49]	chr2	245643	31	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	10	92	2	2.89743	3.224735	3.55204	2.64362e-5	1.29393e-6	6.7603e-4	4.97827e-5
chr5	149496653	149496752	6910258	0	-	0.40404	(0.39,0.42]	chr5	528470	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1:CTB-89H12.4	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.30055	3.224705	4.14886	0.0070645	0.00415881	0.0477419	0.0325842
chr22	19850968	19851067	18434680	0	-	0.585859	(0.53,0.59]	chr22	1571002	50	UTR3	UTR3:EXON_MRNA:INTRON	GNB1L:RTL10	ENSG00000185838.14:ENSG00000215012.9	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1:ENST00000407472.5:ENST00000405640.1:ENST00000328554.9:ENST00000484072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.89916	3.2245850000000003	3.55001	0.00890406	6.11776e-4	0.0565003	0.00818575
chr1	11974808	11974899	45506	0	+	0.626374	(0.59,1]	chr1	5813	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	103	2	2.88332	3.22449	3.56566	5.9453e-4	8.52606e-5	0.00746384	0.00174886
chr11	62852182	62852282	12411557	0	-	0.43	(0.42,0.455]	chr11	961813	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	33	300	2	3.06735	3.22431	3.38127	1.43405e-7	2.4999e-9	8.56302e-6	2.34202e-7
chr20	32166876	32166971	17752649	0	+	0.526316	(0.49,0.53]	chr20	1498541	16	UTR3	UTR3:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	58	2	1.86149	3.22412	4.58675	0.00938303	1.05095e-6	0.0590266	4.17035e-5
chr11	5301754	5301846	12241104	0	-	0.478261	(0.455,0.49]	chr11	946134	8	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	47	2	2.8878	3.2240849999999996	3.56037	5.72551e-4	1.42924e-4	0.0078026	0.00240945
chr1	154270481	154270574	480159	0	+	0.408602	(0.39,0.42]	chr1	49745	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	106	2	2.60902	3.224075	3.83913	6.40255e-5	2.63574e-8	0.00125657	1.95364e-6
chr7	121085227	121085327	8494700	0	+	0.51	(0.49,0.53]	chr7	648338	82	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	71	2	3.08962	3.224015	3.35841	1.37225e-4	1.44383e-5	0.00253405	3.72689e-4
chr16	56476504	56476604	15678998	0	+	0.33	(0.29,0.33]	chr16	1246383	4	UTR3	UTR3:EXON_MRNA	OGFOD1	ENSG00000087263.17	ENST00000336111.9:ENST00000566157.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	31	2	2.71017	3.22389	3.73761	8.23733e-4	2.33029e-4	0.010214	0.00355688
chrX	119236539	119236615	18840401	0	+	0.776316	(0.59,1]	chrX	1605465	2	CDS	CDS:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	3.05115	3.2238249999999997	3.3965	0.00103208	1.83913e-4	0.0121443	0.00296795
chr7	112475618	112475717	8461094	0	+	0.262626	[0,0.29]	chr7	646646	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IFRD1:CTB-163K11.1	ENSG00000006652.15:ENSG00000288640.1	ENST00000675578.1:ENST00000621379.4:ENST00000676282.1:ENST00000675905.1:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000489994.5:ENST00000462155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.15488	3.2236700000000003	4.29246	0.0436536	0.00254021	0.170594	0.0227257
chr3	119437928	119438015	4399135	0	-	0.505747	(0.49,0.53]	chr3	364728	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000468545.1:ENST00000491685.5:ENST00000486159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.72252	3.22356	3.7246	0.0161474	1.36405e-5	0.0860154	3.54667e-4
chr10	73008129	73008221	11568239	0	-	0.358696	(0.33,0.36]	chr10	880432	11	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	3.19963	3.2233650000000003	3.2471	2.93591e-5	7.97183e-7	7.31344e-4	3.29647e-5
chr2	101269215	101269313	1957426	0	+	0.387755	(0.36,0.39]	chr2	185968	1	CDS	CDS:UTR3:EXON_MRNA	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.20444	3.2231899999999998	4.24194	0.0237257	0.00276729	0.109365	0.0247437
chr3	184327644	184327704	3949281	0	+	0.366667	(0.36,0.39]	chr3	332470	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000482303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.20444	3.2231899999999998	4.24194	0.0237257	0.00276729	0.109365	0.0247437
chr11	34090603	34090678	11905391	0	+	0.453333	(0.42,0.455]	chr11	909559	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	99	2	3.00245	3.223155	3.44386	7.49627e-5	3.57575e-7	0.00157538	1.65607e-5
chr12	67299022	67299095	12933994	0	+	0.342466	(0.33,0.36]	chr12	1008078	2	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.07736	3.22307	4.36878	0.0442037	0.0021194	0.172163	0.0198008
chr3	196830673	196830772	3990202	0	+	0.343434	(0.33,0.36]	chr3	336202	24	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.07736	3.22307	4.36878	0.0442037	0.0021194	0.172163	0.0198008
chrX	71300298	71300392	18730899	0	+	0.457447	(0.455,0.49]	chrX	1598445	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	2.85172	3.223045	3.59437	0.010864	3.2026e-5	0.0643837	7.10499e-4
chr5	43292910	43292973	6560189	0	-	0.333333	(0.33,0.36]	chr5	508343	2	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	10	71	2	2.83669	3.2229799999999997	3.60927	4.09743e-5	1.1786e-6	8.78786e-4	5.05188e-5
chr16	56833214	56833310	15680451	0	+	0.520833	(0.49,0.53]	chr16	1246655	1	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5:ENST00000563437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	3.01617	3.222855	3.42954	0.00105489	8.62231e-4	0.0123035	0.0100487
chr1	32773779	32773878	130812	0	+	0.585859	(0.53,0.59]	chr1	16163	10	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.30988	3.222785	4.13569	0.00643853	2.50241e-5	0.0452349	5.82427e-4
chr12	118024850	118024930	13108747	0	+	0.4	(0.39,0.42]	chr12	1023057	1	CDS	CDS:EXON_MRNA	RFC5	ENSG00000111445.14	ENST00000449641.6:ENST00000537315.5:ENST00000454402.7:ENST00000392542.6:ENST00000472603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.11399	3.222645	4.3313	0.014455	0.00209984	0.0787564	0.0204266
chr21	33553505	33553605	18101192	0	+	0.46	(0.455,0.49]	chr21	1534527	29	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	44	2	2.22282	3.2225400000000004	4.22226	0.00483628	1.23185e-5	0.0366328	3.58356e-4
chr6	27133071	27133171	7104125	0	+	0.66	(0.59,1]	chr6	543282	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC11	ENSG00000196787.3	ENST00000359193.3	protein_coding	protein_coding	protein_coding	protein_coding	17	367	2	2.64201	3.222265	3.80252	1.14343e-4	4.33323e-8	0.00202843	3.00596e-6
chr10	102109599	102109683	11668510	0	-	0.535714	(0.53,0.59]	chr10	889662	1	CDS	CDS:EXON_MRNA	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.89427	3.22214	3.55001	6.11776e-4	3.98634e-4	0.00818575	0.00546791
chr1	46316551	46316584	178676	0	+	0.363636	(0.36,0.39]	chr1	23177	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.85784	3.222105	3.58637	0.00191736	5.84377e-4	0.0183299	0.00793559
chr13	110893088	110893149	14157825	0	-	0.377049	(0.36,0.39]	chr13	1107363	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	2.85784	3.222105	3.58637	0.00191736	5.84377e-4	0.0183299	0.00793559
chr6	109366611	109366709	7886645	0	-	0.326531	(0.29,0.33]	chr6	603688	2	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	61	2	3.1283	3.22208	3.31586	1.62041e-5	1.14186e-5	4.51701e-4	3.08108e-4
chr9	112268048	112268121	10803375	0	-	0.383562	(0.36,0.39]	chr9	818471	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	71	2	2.98934	3.2219949999999997	3.45465	2.95996e-5	3.51317e-6	6.70743e-4	1.26792e-4
chr7	12356183	12356256	8683219	0	-	0.534247	(0.53,0.59]	chr7	663973	2	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000644150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	1.78041	3.221945	4.66348	0.0407112	0.00107799	0.163285	0.0118238
chr17	35650701	35650789	16206756	0	+	0.443182	(0.42,0.455]	chr17	1309085	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1:ENST00000587805.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	78	2	2.3277	3.221895	4.11609	0.00333145	6.64101e-8	0.0286606	3.93701e-6
chr8	47943973	47944029	9817270	0	-	0.392857	(0.39,0.42]	chr8	742895	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.11549	3.2218	3.32811	0.00403491	0.00182819	0.032143	0.0183913
chrX	141907604	141907703	18883542	0	+	0.525253	(0.49,0.53]	chrX	1608997	23	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	3.08487	3.22164	3.35841	6.09273e-4	1.37225e-4	0.00760626	0.00253405
chrX	19354490	19354583	18604896	0	+	0.516129	(0.49,0.53]	chrX	1589031	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000355808.9:ENST00000479146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	3.21317	3.221615	3.23006	0.00253719	3.08783e-4	0.0233955	0.00445935
chr5	127517707	127517776	6204674	0	+	0.594203	(0.59,1]	chr5	483406	2	UTR5	UTR5:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512871.1:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	2.09833	3.2216	4.34487	0.0150311	0.0123678	0.0816517	0.0705839
chr11	85981937	85982003	12525960	0	-	0.484848	(0.455,0.49]	chr11	972192	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	107	2	2.33911	3.221555	4.104	5.94441e-4	1.09214e-8	0.00804997	8.34724e-7
chr20	21166400	21166498	17925237	0	-	0.438776	(0.42,0.455]	chr20	1517257	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	KIZ-AS1:RPS15AP1	ENSG00000232712.6:ENSG00000214535.3	ENST00000616177.4:ENST00000457423.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	43	2	2.57051	3.22142	3.87233	0.0265466	4.86008e-6	0.120071	1.51731e-4
chr11	119334824	119334923	12163895	0	+	0.565657	(0.53,0.59]	chr11	938090	4	UTR5	UTR5:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.0042	3.221415	4.43863	0.0113999	0.00254763	0.0668496	0.0233955
chr1	150267416	150267478	1288651	0	-	0.403226	(0.39,0.42]	chr1	128189	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8:ENST00000461320.5:ENST00000236017.5:ENST00000486308.1:ENST00000486720.1:ENST00000476538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	20	2	2.01677	3.221305	4.42584	0.0235818	0.00199429	0.111323	0.0189001
chr12	71785871	71785971	12950962	0	+	0.37	(0.36,0.39]	chr12	1009718	3	UTR3	UTR3:EXON_MRNA	RAB21	ENSG00000080371.6	ENST00000261263.5:ENST00000358546.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.28639	3.221245	4.1561	0.00768469	2.14257e-5	0.050396	5.67278e-4
chr2	70662333	70662432	2726136	0	-	0.484848	(0.455,0.49]	chr2	242862	57	UTR3	UTR3:EXON_MRNA:INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.63872	3.2211600000000002	3.8036	0.00510378	1.59194e-4	0.0390492	0.00263091
chr8	125018129	125018201	9595551	0	+	0.361111	(0.36,0.39]	chr8	727930	2	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1:ENST00000518604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	3.18642	3.2209950000000003	3.25557	0.00359152	4.10744e-6	0.0302391	1.31763e-4
chr10	80507286	80507374	11151911	0	+	0.613636	(0.59,1]	chr10	847898	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.42639	3.2209200000000004	4.01545	0.0409084	0.0251889	0.163285	0.114168
chr16	28735430	28735513	15619342	0	+	0.626506	(0.59,1]	chr16	1238334	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5:ENST00000566086.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	24	2	2.42639	3.2209200000000004	4.01545	0.0409084	0.0251889	0.163285	0.114168
chr5	126804775	126804853	6202518	0	+	0.423077	(0.42,0.455]	chr5	483169	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	74	2	2.47621	3.22081	3.96541	0.00161397	2.38634e-7	0.0169243	1.17692e-5
chr1	154249337	154249437	479921	0	+	0.57	(0.53,0.59]	chr1	49655	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	36	2	1.39828	3.22063	5.04298	0.0486819	1.91383e-4	0.175495	0.0032874
chr9	128187862	128187917	10863935	0	-	0.6	(0.59,1]	chr9	823448	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.65415	3.2204550000000003	3.78676	0.00171847	3.60514e-4	0.0168227	0.00544284
chr3	194417401	194417500	4654616	0	-	0.454545	(0.42,0.455]	chr3	384361	32	INTRON	INTRON	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000497567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.72686	3.220255	3.71365	0.00330337	2.63375e-4	0.027613	0.00427022
chr1	44355182	44355260	971170	0	-	0.717949	(0.59,1]	chr1	102447	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000452396.5:ENST00000495828.1:ENST00000457571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	24	2	2.59461	3.22009	3.84557	0.0410704	0.0259455	0.163285	0.117079
chr1	61725020	61725120	1065178	0	-	0.67	(0.59,1]	chr1	108849	1	CDS_START	CDS_START:CDS:EXON_MRNA	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	24	2	2.59461	3.22009	3.84557	0.0410704	0.0259455	0.163285	0.117079
chr21	43760721	43760820	18136205	0	+	0.666667	(0.59,1]	chr21	1538360	48	UTR3	UTR3:EXON_MRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.59461	3.22009	3.84557	0.0410704	0.0259455	0.163285	0.117079
chr7	30022740	30022816	8748573	0	-	0.526316	(0.49,0.53]	chr7	667478	2	CDS	CDS:EXON_MRNA:INTRON	FKBP14	ENSG00000106080.11	ENST00000222803.10:ENST00000419018.1:ENST00000412494.1:ENST00000479939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.99849	3.219995	3.4415	0.00630123	9.98297e-4	0.0445415	0.0111246
chrX	47214586	47214637	18686923	0	+	0.529412	(0.49,0.53]	chrX	1593279	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.99849	3.219995	3.4415	0.00630123	9.98297e-4	0.0445415	0.0111246
chr21	33528240	33528315	18220582	0	-	0.426667	(0.42,0.455]	chr21	1546384	2	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9:ENST00000366093.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	2.90284	3.2199549999999997	3.53707	4.27478e-4	6.65925e-6	0.00618684	1.9719e-4
chr11	64318315	64318386	11980482	0	+	0.647887	(0.59,1]	chr11	919231	1	CDS	CDS:EXON_MRNA	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.57004	3.219905	4.86977	0.0364827	0.00246014	0.145024	0.0230058
chr10	96750636	96750724	11210220	0	+	0.590909	(0.59,1]	chr10	852817	5	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	140	2	2.94789	3.219805	3.49172	1.88061e-4	2.24457e-5	0.0032588	5.34605e-4
chr1	44651249	44651344	173230	0	+	0.652632	(0.59,1]	chr1	22214	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000474064.5:ENST00000484745.5:ENST00000480686.5:ENST00000474956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	1.96394	3.219555	4.47517	0.0453144	0.00735659	0.174798	0.0491503
chr22	23767446	23767519	18448287	0	-	0.739726	(0.59,1]	chr22	1573349	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CHCHD10	ENSG00000250479.9	ENST00000484558.3:ENST00000401675.7:ENST00000520222.1:ENST00000517886.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	32	2	1.96394	3.219555	4.47517	0.0453144	0.00735659	0.174798	0.0491503
chr21	38103132	38103232	18249956	0	-	0.49	(0.455,0.49]	chr21	1547536	34	INTRON	INTRON	KCNJ6:DSCR4	ENSG00000157542.11:ENSG00000184029.9	ENST00000645093.1:ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	41	2	2.15985	3.219455	4.27906	0.0128965	8.82347e-6	0.0722356	2.48294e-4
chr15	58595964	58596064	15310661	0	-	0.4	(0.39,0.42]	chr15	1208273	73	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.70591	3.219425	3.73294	0.0190864	0.0185716	0.0958835	0.0932453
chr2	30641106	30641203	1709547	0	+	0.402062	(0.39,0.42]	chr2	167661	6	UTR3	UTR3:EXON_MRNA	LCLAT1	ENSG00000172954.14	ENST00000379509.8:ENST00000309052.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.70591	3.219425	3.73294	0.0190864	0.0185716	0.0958835	0.0932453
chr8	73552176	73552247	9890300	0	-	0.408451	(0.39,0.42]	chr8	747730	2	CDS	CDS:UTR3:EXON_MRNA	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.70591	3.219425	3.73294	0.0190864	0.0185716	0.0958835	0.0932453
chr15	51887588	51887649	14933734	0	+	0.344262	(0.33,0.36]	chr15	1174078	1	CDS	CDS:UTR5:EXON_MRNA	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr16	30670712	30670810	15630777	0	+	0.357143	(0.33,0.36]	chr16	1240408	12	UTR3	UTR3:EXON_MRNA	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000287468.5:ENST00000494101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr2	117817633	117817728	2021726	0	+	0.357895	(0.33,0.36]	chr2	191064	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000474694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr2	135115298	135115381	2080347	0	+	0.349398	(0.33,0.36]	chr2	195110	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr20	3963874	3963917	17883568	0	-	0.348837	(0.33,0.36]	chr20	1513743	1	CDS	CDS:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6:ENST00000545616.2	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr20	38091268	38091368	17782069	0	+	0.34	(0.33,0.36]	chr20	1502505	15	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000373433.9:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr5	80767932	80768026	6058778	0	+	0.340426	(0.33,0.36]	chr5	475571	1	CDS	CDS:EXON_MRNA	MSH3	ENSG00000113318.11	ENST00000265081.7:ENST00000670357.1:ENST00000667069.1:ENST00000658259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr5	154054499	154054598	6310072	0	+	0.333333	(0.33,0.36]	chr5	492204	9	UTR3	UTR3:EXON_MRNA:INTRON	MFAP3	ENSG00000037749.13	ENST00000522782.6:ENST00000681641.1:ENST00000520327.6:ENST00000521527.5:ENST00000322602.9:ENST00000679729.1:ENST00000519928.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr6	27255781	27255874	7104285	0	+	0.333333	(0.33,0.36]	chr6	543351	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRSS16	ENSG00000112812.16	ENST00000230582.8:ENST00000421826.6:ENST00000454665.6:ENST00000495683.5:ENST00000492575.5:ENST00000377456.6:ENST00000485603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr7	50403211	50403311	8279163	0	+	0.35	(0.33,0.36]	chr7	630737	27	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr9	100441938	100442038	10388104	0	+	0.35	(0.33,0.36]	chr9	782644	1	CDS_START	CDS_START:CDS:EXON_MRNA	MSANTD3	ENSG00000066697.15	ENST00000395067.7:ENST00000398977.2:ENST00000374885.5:ENST00000622639.4:ENST00000374886.7:ENST00000613183.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.31026	3.2193300000000002	4.1284	0.0519897	0.00407303	0.18423900000000001	0.0324137
chr2	47463092	47463154	1785113	0	+	0.354839	(0.33,0.36]	chr2	172491	2	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	3.08961	3.21927	3.34893	2.22813e-4	1.38453e-4	0.00370775	0.00234747
chr3	152456266	152456361	3818437	0	+	0.589474	(0.53,0.59]	chr3	325692	1	CDS	CDS:EXON_MRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1	protein_coding	protein_coding	protein_coding	protein_coding	8	93	2	2.63323	3.21925	3.80527	2.91603e-4	9.95548e-7	0.00463214	3.97538e-5
chr1	155138043	155138098	483036	0	+	0.527273	(0.49,0.53]	chr1	50527	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC50A1	ENSG00000169241.19	ENST00000484157.5:ENST00000490770.5:ENST00000475824.6:ENST00000368401.6:ENST00000622581.4:ENST00000490276.5:ENST00000303343.12:ENST00000368404.9:ENST00000650403.1:ENST00000368405.7:ENST00000488609.5:ENST00000484027.1:ENST00000479579.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	2.99849	3.2192	3.43991	0.00630123	8.40266e-5	0.0445415	0.00158427
chr9	111897215	111897313	10420006	0	+	0.561224	(0.53,0.59]	chr9	784429	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	3.1234	3.219195	3.31499	0.00390623	3.217e-5	0.0322851	7.12922e-4
chr4	118745001	118745060	5618060	0	-	0.525424	(0.49,0.53]	chr4	447611	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5:ENST00000514561.5:ENST00000419654.6:ENST00000511033.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.70307	3.219005	3.73494	0.0189345	0.00363585	0.0934721	0.0298137
chr5	10411400	10411468	5875299	0	+	0.485294	(0.455,0.49]	chr5	462007	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	98	2	2.82754	3.2187099999999997	3.60988	9.14797e-5	2.30669e-7	0.00183322	1.14264e-5
chr17	19508208	19508307	16156757	0	+	0.424242	(0.42,0.455]	chr17	1303124	108	INTRON	INTRON	SLC47A1	ENSG00000142494.13	ENST00000584348.5	protein_coding	processed_transcript	protein_coding	processed_transcript	82	707	2	3.18435	3.21867	3.25299	1.06202e-9	8.0693e-10	1.10438e-7	9.50448e-8
chr17	28468016	28468113	16175937	0	+	0.443299	(0.42,0.455]	chr17	1305136	3	EXON_PSEUDO	EXON_PSEUDO	RPS7P1	ENSG00000263266.2	ENST00000571702.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	133	2	3.06372	3.21861	3.3735	1.63366e-6	7.71855e-7	6.65292e-5	3.21229e-5
chr9	137243556	137243631	10515410	0	+	0.546667	(0.53,0.59]	chr9	797251	1	UTR3	UTR3:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	94	2	3.21321	3.21858	3.22395	6.1362e-5	5.81032e-6	0.00133162	1.75356e-4
chr1	20553665	20553764	89772	0	+	0.787879	(0.59,1]	chr1	10202	7	CDS	CDS:EXON_MRNA	FAM43B	ENSG00000183114.8	ENST00000332947.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.92097	3.218525	3.51608	0.0102634	0.00108676	0.0628742	0.0118659
chr1	210858322	210858421	1474771	0	-	0.40404	(0.39,0.42]	chr1	149069	3	UTR3	UTR3:EXON_MRNA:INTRON	KCNH1:RP11-434N15.2	ENSG00000143473.13:ENSG00000284299.1	ENST00000367007.5:ENST00000638498.1:ENST00000640710.1:ENST00000271751.10:ENST00000639952.1:ENST00000640528.1:ENST00000638960.1:ENST00000638357.1:ENST00000640243.1:ENST00000640044.1:ENST00000640566.1:ENST00000640522.1:ENST00000639602.1:ENST00000638983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.49701	3.21838	3.93975	0.0339607	0.0105893	0.141431	0.0644466
chr10	50555486	50555585	11489024	0	-	0.414141	(0.39,0.42]	chr10	876768	352	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.49701	3.21838	3.93975	0.0339607	0.0105893	0.141431	0.0644466
chr15	84687699	84687774	15421039	0	-	0.426667	(0.42,0.455]	chr15	1219633	2	CDS	CDS:EXON_MRNA:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	2.99666	3.21838	3.4401	0.00104775	9.72702e-7	0.0123035	3.90471e-5
chr19	57257179	57257278	17405598	0	+	0.393939	(0.39,0.42]	chr19	1450067	26	UTR3	UTR3:EXON_MRNA	ZNF805	ENSG00000204524.7	ENST00000414468.3	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.49701	3.21838	3.93975	0.0339607	0.0105893	0.141431	0.0644466
chr5	76732313	76732412	6044913	0	+	0.40404	(0.39,0.42]	chr5	474229	1	CDS	CDS:EXON_MRNA	F2R	ENSG00000181104.7	ENST00000319211.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.49701	3.21838	3.93975	0.0339607	0.0105893	0.141431	0.0644466
chr5	177502283	177502378	6991859	0	-	0.410526	(0.39,0.42]	chr5	534990	5	UTR3	UTR3:EXON_MRNA	DOK3	ENSG00000146094.16	ENST00000510898.7:ENST00000312943.10:ENST00000377112.8:ENST00000500323.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.49701	3.21838	3.93975	0.0339607	0.0105893	0.141431	0.0644466
chr1	1544862	1544932	827895	0	-	0.485714	(0.455,0.49]	chr1	82530	1	CDS	CDS:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378726.1:ENST00000378725.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.23479	3.2183399999999995	4.20189	0.0209335	0.00397662	0.101282	0.0322851
chr1	15939988	15940081	71943	0	+	0.462366	(0.455,0.49]	chr1	8126	7	UTR3	UTR3:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.23479	3.2183399999999995	4.20189	0.0209335	0.00397662	0.101282	0.0322851
chr7	36399314	36399393	8230399	0	+	0.468354	(0.455,0.49]	chr7	627445	4	CDS	CDS:EXON_MRNA	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000424865.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.23479	3.2183399999999995	4.20189	0.0209335	0.00397662	0.101282	0.0322851
chr4	9602719	9602819	5307679	0	-	0.61	(0.59,1]	chr4	427432	187	INTRON	INTRON	RP11-264E23.4	ENSG00000287117.1	ENST00000653847.1	lncRNA	lncRNA	lncRNA	lncRNA	43	920	2	1.61205	3.2181	4.82415	0.00379523	1.69209e-12	0.0317508	3.60403e-10
chr1	154255682	154255755	479991	0	+	0.465753	(0.455,0.49]	chr1	49685	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000489076.1:ENST00000433615.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	109	2	2.91724	3.2180999999999997	3.51896	1.16868e-5	4.99304e-7	3.44151e-4	2.20672e-5
chr11	118602287	118602380	12159751	0	+	0.451613	(0.42,0.455]	chr11	937279	7	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	2.99081	3.21809	3.44537	8.6897e-5	1.31513e-5	0.00177086	3.45397e-4
chr1	21851858	21851926	890943	0	-	0.661765	(0.59,1]	chr1	92378	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	119	2	2.45126	3.21808	3.9849	0.00209267	6.78787e-6	0.0204266	2.00658e-4
chr16	23683942	23684015	15595278	0	+	0.520548	(0.49,0.53]	chr16	1236727	2	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000567897.6:ENST00000568568.1:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	103	2	2.94663	3.2180400000000002	3.48945	9.31926e-6	5.36162e-6	2.86425e-4	1.63999e-4
chr21	8209700	8209799	18041114	0	+	0.464646	(0.455,0.49]	chr21	1530812	4	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	1622	13732	2	3.10079	3.2176	3.33441	2.30968e-10	7.41696e-12	2.86356e-8	1.45465e-9
chr12	56144132	56144222	12898438	0	+	0.522222	(0.49,0.53]	chr12	1004319	4	UTR3	UTR3:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000550515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	3.00538	3.21746	3.42954	0.00105489	2.13868e-4	0.0123035	0.0033174
chr2	219223674	219223764	3191322	0	-	0.544444	(0.53,0.59]	chr2	280877	2	CDS	CDS:EXON_MRNA	ATG9A	ENSG00000198925.12	ENST00000396761.6:ENST00000361242.9:ENST00000409033.7:ENST00000409618.5:ENST00000409422.5:ENST00000429920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.90978	3.217365	3.52495	0.00857883	5.15316e-5	0.0552386	0.00105223
chr12	49762872	49762896	12869270	0	+	0.291667	(0.29,0.33]	chr12	999644	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000552370.5:ENST00000395006.8:ENST00000547798.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	51	2	2.45373	3.21736	3.98099	0.0156405	1.93866e-7	0.084273700000000007	9.90865e-6
chr1	149861031	149861131	1287085	0	-	0.58	(0.53,0.59]	chr1	127849	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	206	2	2.34697	3.21733	4.08769	5.33622e-4	2.32105e-10	0.00685157	3.17905e-8
chr15	41281387	41281487	14885245	0	+	0.42	(0.39,0.42]	chr15	1169243	21	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	9	69	2	2.60286	3.21718	3.8315	1.08088e-4	7.07508e-6	0.00193027	2.27834e-4
chr13	48328275	48328371	14016669	0	-	0.395833	(0.39,0.42]	chr13	1099189	3	EXON_PSEUDO	EXON_PSEUDO	PCNPP5	ENSG00000177197.7	ENST00000452246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.49426	3.21711	3.93996	0.0085468	0.00841622	0.0551026	0.054565
chr6	87612168	87612248	7270528	0	+	0.4125	(0.39,0.42]	chr6	560485	2	CDS	CDS:EXON_MRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.49426	3.21711	3.93996	0.0085468	0.00841622	0.0551026	0.054565
chr14	75134493	75134591	14709071	0	-	0.438776	(0.42,0.455]	chr14	1152525	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1:ENST00000555873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	63	2	2.44756	3.216925	3.98629	9.46189e-4	2.11853e-6	0.0113687	7.50523e-5
chr1	196726760	196726850	641354	0	+	0.488889	(0.455,0.49]	chr1	64494	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.50904	3.216835	3.92463	0.0310515	0.0113417	0.131262	0.0665375
chr12	110039186	110039282	13084246	0	+	0.458333	(0.455,0.49]	chr12	1020322	18	UTR3	UTR3:EXON_MRNA	ANKRD13A	ENSG00000076513.17	ENST00000261739.9:ENST00000553251.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.50904	3.216835	3.92463	0.0310515	0.0113417	0.131262	0.0665375
chr12	10507033	10507127	12732053	0	+	0.446809	(0.42,0.455]	chr12	989914	12	CDS	CDS:EXON_MRNA	EIF2S3B	ENSG00000180574.3	ENST00000322446.3:ENST00000538173.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.34191	3.21673	4.09155	0.0159091	2.98142e-5	0.0854674	6.7355e-4
chr5	109335293	109335389	6754744	0	-	0.395833	(0.39,0.42]	chr5	518800	7	UTR3	UTR3:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	3.18738	3.2165	3.24562	7.15306e-5	5.84121e-5	0.00137393	0.00129108
chr6	30725157	30725252	7112230	0	+	0.515789	(0.49,0.53]	chr6	545067	9	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	255	2	3.03341	3.21645	3.39949	2.54163e-7	9.59542e-9	1.24558e-5	8.21403e-7
chr11	102401538	102401615	12562735	0	-	0.376623	(0.36,0.39]	chr11	974352	1	CDS	CDS:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	2.88918	3.216365	3.54355	0.00212816	1.35556e-6	0.0206577	5.16469e-5
chr3	98580015	98580111	4319537	0	-	0.270833	[0,0.29]	chr3	360252	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	77	2	2.71222	3.2163	3.72038	1.34594e-4	7.98809e-8	0.00249552	4.61179e-6
chr1	40071998	40072091	151980	0	+	0.44086	(0.42,0.455]	chr1	19043	6	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	3.05889	3.21609	3.37329	0.00524205	0.00136107	0.0399155	0.0141115
chr16	24561907	24561992	15600792	0	+	0.447059	(0.42,0.455]	chr16	1237030	2	CDS	CDS:EXON_MRNA	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000319715.10:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6:ENST00000562430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	3.05889	3.21609	3.37329	0.00524205	0.00136107	0.0399155	0.0141115
chr9	131215211	131215289	10496540	0	+	0.525641	(0.49,0.53]	chr9	793363	1	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	3.1011	3.2160450000000003	3.33099	5.69237e-4	1.59567e-4	0.00778538	0.00263091
chr5	146463712	146463793	6281094	0	+	0.506173	(0.49,0.53]	chr5	489543	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000513298.5:ENST00000510724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.46958	3.2159250000000004	3.96227	0.00344146	2.55585e-6	0.0292838	8.83735e-5
chr1	173487763	173487863	548620	0	+	0.48	(0.455,0.49]	chr1	58304	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	216	2	2.84327	3.21555	3.58783	3.06955e-6	2.2717e-9	1.14042e-4	2.15603e-7
chr12	49763381	49763478	12869276	0	+	0.525773	(0.49,0.53]	chr12	999645	6	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.95928	3.215475	3.47167	9.07604e-5	6.95049e-5	0.00167715	0.00147069
chr9	131197515	131197615	10496362	0	+	0.46	(0.455,0.49]	chr9	793351	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	78	2	2.48891	3.215335	3.94176	7.24922e-4	2.85074e-7	0.00911324	1.37031e-5
chr17	75174751	75174823	16682563	0	-	0.472222	(0.455,0.49]	chr17	1372985	1	CDS	CDS:EXON_MRNA:INTRON	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	20	203	2	2.66449	3.21523	3.76597	2.82094e-5	5.75522e-10	7.12305e-4	6.40452e-8
chr8	140527447	140527547	10132117	0	-	0.41	(0.39,0.42]	chr8	760954	74	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.53821	3.215195	4.89218	0.0571218	1.6518e-4	0.196074	0.0029267300000000002
chr18	46098231	46098292	17103956	0	-	0.606557	(0.59,1]	chr18	1404407	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1:ENST00000588390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	140	2	2.86131	3.21517	3.56903	2.95355e-4	1.41433e-5	0.00467597	3.65833e-4
chr9	137184291	137184351	10893350	0	-	0.616667	(0.59,1]	chr9	828454	1	INTRON	INTRON	ANAPC2	ENSG00000176248.9	ENST00000323927.3:ENST00000495611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.39747	3.21505	4.03263	0.0430221	1.11254e-4	0.161091	0.00213212
chr3	139368216	139368288	4479577	0	-	0.375	(0.36,0.39]	chr3	372231	2	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	3.00115	3.21503	3.42891	0.0012486	9.14064e-5	0.0137762	0.0016849
chr12	45850330	45850428	12851680	0	+	0.438776	(0.42,0.455]	chr12	998018	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.03532	3.215	4.39468	0.040947	0.00240483	0.163285	0.0217482
chr10	59792916	59793016	11517228	0	-	0.67	(0.59,1]	chr10	877719	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.53147	3.2149400000000004	3.89841	0.00807544	1.91539e-4	0.0531324	0.00304814
chr2	43934815	43934878	2623418	0	-	0.444444	(0.42,0.455]	chr2	236177	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	2.22933	3.21491	4.20049	0.0102262	1.49765e-5	0.062872	3.83096e-4
chr15	22866212	22866301	14810908	0	+	0.460674	(0.455,0.49]	chr15	1162139	1	CDS	CDS:EXON_MRNA	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	3.06914	3.21482	3.3605	0.00147278	6.6649e-4	0.0157578	0.00820018
chr19	15244322	15244415	17484983	0	-	0.655914	(0.59,1]	chr19	1465318	2	CDS	CDS:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.77418	3.214635	3.65509	0.0160729	5.95213e-4	0.0860154	0.00746384
chr10	84150794	84150880	11164606	0	+	0.372093	(0.36,0.39]	chr10	848155	2	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.38564	3.2146	4.04356	0.0476159	1.32387e-6	0.17993	5.07778e-5
chr2	26386444	26386536	1687306	0	+	0.445652	(0.42,0.455]	chr2	164951	2	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.18	ENST00000613142.4:ENST00000260585.12	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.51988	3.214545	3.90921	0.0121657	0.00300574	0.0701019	0.0267032
chrX	155238941	155239041	18920369	0	+	0.2	[0,0.29]	chrX	1612534	2	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	55	2	2.08391	3.2144449999999996	4.34498	0.00360933	1.12009e-7	0.0303804	6.16568e-6
chr2	43223551	43223647	2618839	0	-	0.447917	(0.42,0.455]	chr2	235738	13	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	3.00245	3.214245	3.42604	7.49627e-5	1.46189e-5	0.00157538	3.76794e-4
chr11	61862971	61863069	11972002	0	+	0.55102	(0.53,0.59]	chr11	917460	1	CDS	CDS:EXON_MRNA	FADS2	ENSG00000134824.14	ENST00000257261.10:ENST00000522056.5:ENST00000521849.5:ENST00000278840.9:ENST00000521571.6:ENST00000355484.3:ENST00000523235.5:ENST00000522359.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	3.20874	3.2140750000000002	3.21941	0.00278422	0.00266171	0.0241009	0.0240332
chr14	100375282	100375378	14788937	0	-	0.572917	(0.53,0.59]	chr14	1158789	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556295.5:ENST00000555031.5:ENST00000553934.1:ENST00000553581.1:ENST00000555464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	3.20874	3.2140750000000002	3.21941	0.00278422	0.00266171	0.0241009	0.0240332
chr7	101210602	101210673	8953673	0	-	0.577465	(0.53,0.59]	chr7	684674	2	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000460132.5:ENST00000440925.1:ENST00000466881.1:ENST00000421736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.20874	3.2140750000000002	3.21941	0.00278422	0.00266171	0.0241009	0.0240332
chr9	37436682	37436782	10255395	0	+	0.57	(0.53,0.59]	chr9	771719	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GRHPR	ENSG00000137106.18	ENST00000318158.11:ENST00000460882.5:ENST00000491488.5:ENST00000497693.1:ENST00000480596.5:ENST00000494290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	3.20874	3.2140750000000002	3.21941	0.00278422	0.00266171	0.0241009	0.0240332
chr20	32194871	32194970	17941019	0	-	0.575758	(0.53,0.59]	chr20	1519244	25	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.56002	3.214055	3.86809	0.00634904	1.18973e-4	0.0446708	0.00207755
chr9	132989819	132989907	10502715	0	+	0.579545	(0.53,0.59]	chr9	794043	3	CDS	CDS:EXON_MRNA	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5:ENST00000636263.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	3.03385	3.2140050000000002	3.39416	0.00126006	1.81515e-4	0.013837	0.00293332
chr2	171748184	171748283	2208079	0	+	0.30303	(0.29,0.33]	chr2	202113	4	UTR3	UTR3:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000508530.5:ENST00000409197.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.17855	3.21394	4.24933	0.0183673	1.02924e-5	0.0928041	2.83837e-4
chr1	160290588	160290686	1328673	0	-	0.459184	(0.455,0.49]	chr1	135965	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	2.74211	3.2139249999999997	3.68574	0.00330545	4.36168e-7	0.028478	1.97292e-5
chr16	58707602	58707697	15967619	0	-	0.410526	(0.39,0.42]	chr16	1281403	6	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.19588	3.2138099999999996	3.23174	0.00321212	2.82122e-4	0.0280721	0.00415762
chr8	140527247	140527347	10132115	0	-	0.42	(0.39,0.42]	chr8	760954	72	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	3.19588	3.2138099999999996	3.23174	0.00321212	2.82122e-4	0.0280721	0.00415762
chr5	177338487	177338546	6991117	0	-	0.644068	(0.59,1]	chr5	534745	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000502721.5:ENST00000513877.1:ENST00000506310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	88	2	2.22725	3.213805	4.20036	0.00535937	4.07557e-5	0.0406564	8.75066e-4
chr5	134928227	134928326	6846876	0	-	0.353535	(0.33,0.36]	chr5	523926	17	EXON_PSEUDO	EXON_PSEUDO	MTND4LP30	ENSG00000198868.3	ENST00000454092.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	93	2	3.13916	3.213735	3.28831	4.50423e-5	2.77631e-7	0.0010411	1.33712e-5
chr20	62387102	62387136	17861404	0	+	0.676471	(0.59,1]	chr20	1510043	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	64	1223	2	2.80992	3.2136649999999998	3.61741	2.48421e-6	4.04593e-9	9.48601e-5	3.54216e-7
chr1	219982771	219982844	1510814	0	-	0.479452	(0.455,0.49]	chr1	151000	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000485821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	3.11555	3.21363	3.31171	1.87327e-4	1.18691e-5	0.00325006	3.16198e-4
chr8	102858012	102858081	9984734	0	-	0.536232	(0.53,0.59]	chr8	753502	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	40	2	3.11779	3.21361	3.30943	0.0018255	5.11883e-4	0.0183913	0.00664583
chr6	24706136	24706236	7638784	0	-	0.54	(0.53,0.59]	chr6	581799	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	3.18707	3.213585	3.2401	3.55681e-4	5.1985e-5	0.00539248	0.00106081
chr17	4797732	4797811	16093295	0	+	0.582278	(0.53,0.59]	chr17	1294590	1	CDS	CDS:UTR3:EXON_MRNA	PSMB6	ENSG00000142507.10	ENST00000614486.4:ENST00000270586.8:ENST00000571309.1:ENST00000575643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.35511	3.213535	4.07196	0.0445399	1.26681e-6	0.172163	4.89488e-5
chr1	155056385	155056470	482581	0	+	0.517647	(0.49,0.53]	chr1	50367	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM15	ENSG00000143537.14	ENST00000527418.5:ENST00000529473.5:ENST00000526491.5:ENST00000449910.6:ENST00000359280.8:ENST00000360674.8:ENST00000368412.7:ENST00000355956.6:ENST00000271836.10:ENST00000461564.6:ENST00000356955.7:ENST00000368413.5:ENST00000487956.6:ENST00000531455.5:ENST00000447332.3:ENST00000472434.5:ENST00000534019.1:ENST00000525020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr11	62833617	62833674	12411458	0	-	0.491228	(0.49,0.53]	chr11	961774	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR74	ENSG00000133316.16	ENST00000278856.9:ENST00000311713.11:ENST00000525239.5:ENST00000529106.5:ENST00000525752.5:ENST00000544831.5:ENST00000543688.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr12	56348528	56348623	13350613	0	-	0.505263	(0.49,0.53]	chr12	1051246	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STAT2	ENSG00000170581.14	ENST00000314128.9:ENST00000556539.5:ENST00000651301.1:ENST00000651915.1:ENST00000651934.1:ENST00000652091.1:ENST00000651805.1:ENST00000651078.1:ENST00000650805.1:ENST00000652741.1:ENST00000652624.1:ENST00000556140.6:ENST00000652398.1:ENST00000651967.1:ENST00000651339.1:ENST00000557235.5:ENST00000557199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr14	20996526	20996611	14172034	0	+	0.517647	(0.49,0.53]	chr14	1109335	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	METTL17	ENSG00000165792.18	ENST00000339374.11:ENST00000382985.8:ENST00000556670.6:ENST00000555533.6:ENST00000555640.6:ENST00000557550.6:ENST00000554354.1:ENST00000553389.5:ENST00000554849.1:ENST00000556733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr6	30061624	30061669	7109999	0	+	0.511111	(0.49,0.53]	chr6	544469	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR1H	ENSG00000066379.15	ENST00000471008.5:ENST00000376782.6:ENST00000359374.8:ENST00000376785.2:ENST00000332435.10:ENST00000463141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr7	50783406	50783505	8817534	0	-	0.515152	(0.49,0.53]	chr7	673001	6	INTRON	INTRON	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000644769.1:ENST00000644879.1:ENST00000402497.6:ENST00000645075.2:ENST00000439044.7:ENST00000644716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr7	135395716	135395799	9083685	0	-	0.506024	(0.49,0.53]	chr7	693477	2	CDS	CDS:EXON_MRNA	CNOT4	ENSG00000080802.19	ENST00000541284.5:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chrX	53575715	53575788	19077635	0	-	0.493151	(0.49,0.53]	chrX	1622829	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.3044	3.213515	4.12263	0.0509448	0.00591451	0.181793	0.0427941
chr8	58578120	58578208	9351230	0	+	0.465909	(0.455,0.49]	chr8	715148	2	CDS	CDS:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000630925.1:ENST00000447267.4:ENST00000523441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.85172	3.213485	3.57525	0.010864	5.24878e-4	0.0643837	0.00677371
chr21	8392741	8392839	18041457	0	+	0.428571	(0.42,0.455]	chr21	1530861	39	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1566	12980	2	2.97805	3.213435	3.44882	1.01664e-9	1.49758e-12	1.0635e-7	3.52654e-10
chr3	43577071	43577166	4145659	0	-	0.452632	(0.42,0.455]	chr3	346463	5	CDS	CDS:EXON_MRNA:INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5:ENST00000428472.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.59462	3.213435	3.83225	0.0062772	6.45764e-6	0.0445415	1.92232e-4
chr12	50747873	50747971	12874707	0	+	0.520408	(0.49,0.53]	chr12	1000428	32	UTR3	UTR3:EXON_MRNA	DIP2B	ENSG00000066084.13	ENST00000301180.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.48488	3.213325	3.94177	0.032052	0.0104929	0.133433	0.063428
chr15	90074801	90074898	15437479	0	-	0.505155	(0.49,0.53]	chr15	1221141	4	EXON_LNCRNA	EXON_LNCRNA	ZNF710-AS1	ENSG00000259291.2	ENST00000620791.1:ENST00000558334.1	lncRNA	lncRNA	lncRNA	lncRNA	1	15	2	2.48488	3.213325	3.94177	0.032052	0.0104929	0.133433	0.063428
chr6	4130766	4130865	7575869	0	-	0.525253	(0.49,0.53]	chr6	578159	1	CDS	CDS:EXON_MRNA	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000464583.5:ENST00000495548.1:ENST00000489086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.48488	3.213325	3.94177	0.032052	0.0104929	0.133433	0.063428
chr9	124521124	124521223	10850471	0	-	0.515152	(0.49,0.53]	chr9	821976	40	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.48488	3.213325	3.94177	0.032052	0.0104929	0.133433	0.063428
chr19	58545486	58545537	17413293	0	+	0.627451	(0.59,1]	chr19	1451176	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597968.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.77109	3.2130900000000002	3.65509	0.00331425	5.95213e-4	0.0285314	0.00746384
chr22	19962526	19962626	18296452	0	+	0.68	(0.59,1]	chr22	1552987	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	COMT	ENSG00000093010.15	ENST00000676678.1:ENST00000403184.5:ENST00000361682.11:ENST00000403710.5:ENST00000407537.5:ENST00000467943.5:ENST00000678868.1:ENST00000678769.1:ENST00000428707.2:ENST00000412786.5:ENST00000207636.9:ENST00000406520.7:ENST00000678255.1:ENST00000449653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	88	2	2.24047	3.21308	4.18569	0.00487097	5.09234e-5	0.0366486	0.00114531
chr8	56963493	56963593	9836826	0	-	0.29	[0,0.29]	chr8	744432	57	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.79116	3.21302	3.63488	0.00287618	7.12896e-4	0.0247002	0.00897774
chr5	132878871	132878971	6837677	0	-	0.37	(0.36,0.39]	chr5	523235	36	UTR3	UTR3:EXON_MRNA	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.43858	3.213005	4.98743	0.0581529	8.82225e-5	0.199345	0.00178337
chr2	119263056	119263147	2024537	0	+	0.637363	(0.59,1]	chr2	191406	1	CDS	CDS:UTR3:EXON_MRNA	STEAP3	ENSG00000115107.20	ENST00000393106.6:ENST00000393110.7:ENST00000409811.5:ENST00000393107.2	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	3.17616	3.2129399999999997	3.24972	0.00434232	0.00314037	0.0339139	0.0264943
chr1	88953062	88953152	1156524	0	-	0.366667	(0.36,0.39]	chr1	114045	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KYAT3	ENSG00000137944.18	ENST00000370491.7:ENST00000446900.6:ENST00000260508.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.84089	3.212825	3.58476	0.0128123	5.01956e-4	0.0719798	0.00653592
chr1	110344643	110344741	404038	0	+	0.336735	(0.33,0.36]	chr1	39594	20	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	3.11212	3.2127850000000002	3.31345	1.26992e-5	1.24422e-5	3.67844e-4	3.29303e-4
chr17	40391505	40391572	16538760	0	-	0.358209	(0.33,0.36]	chr17	1354561	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000578412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.70185	3.2127499999999998	3.72365	0.00121183	3.19155e-4	0.0129756	0.00491578
chr9	92059178	92059243	10735912	0	-	0.4	(0.39,0.42]	chr9	812117	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	3.09736	3.2127350000000003	3.32811	0.00182819	5.79886e-4	0.0183913	0.00734771
chr1	47216289	47216387	985512	0	-	0.346939	(0.33,0.36]	chr1	104046	1	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.7655	3.21271	3.65992	0.0175892	3.45596e-4	0.0918323	0.00486237
chr7	103471969	103472063	8962946	0	-	0.340426	(0.33,0.36]	chr7	686032	3	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.7655	3.21271	3.65992	0.0175892	3.45596e-4	0.0918323	0.00486237
chr7	93219296	93219394	8927921	0	-	0.520408	(0.49,0.53]	chr7	681291	3	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.66439	3.2126900000000003	3.76099	0.00134122	2.00194e-4	0.0139818	0.0034021
chr9	128163442	128163515	10476936	0	+	0.520548	(0.49,0.53]	chr9	789632	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C9orf16	ENSG00000171159.5	ENST00000372994.2:ENST00000492588.1:ENST00000489240.1:ENST00000486420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	2.66439	3.2126900000000003	3.76099	0.00134122	2.00194e-4	0.0139818	0.0034021
chr1	17439610	17439677	874341	0	-	0.462687	(0.455,0.49]	chr1	89672	2	UTR5	UTR5:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.78554	3.21266	4.63978	0.0178667	6.94032e-4	0.0936098	0.00876781
chr11	12980511	12980608	12278015	0	-	0.505155	(0.49,0.53]	chr11	949302	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000532541.6:ENST00000529328.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	2.30264	3.2126349999999997	4.12263	0.0165402	0.00591451	0.087611	0.0427941
chr12	64450326	64450426	12922144	0	+	0.51	(0.49,0.53]	chr12	1007119	23	UTR3	UTR3:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.30264	3.2126349999999997	4.12263	0.0165402	0.00591451	0.087611	0.0427941
chr16	28724657	28724720	15619223	0	+	0.492063	(0.49,0.53]	chr16	1238297	1	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	RP11-231C14.10:EIF3C:MIR6862-2	ENSG00000288630.1:ENSG00000184110.15:ENSG00000278340.1	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000614755.1	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:primary_miRNA	2	20	2	2.30264	3.2126349999999997	4.12263	0.0165402	0.00591451	0.087611	0.0427941
chrX	155054672	155054770	18919145	0	+	0.510204	(0.49,0.53]	chrX	1612379	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FUNDC2	ENSG00000165775.18	ENST00000369498.8:ENST00000484175.5:ENST00000456179.1:ENST00000471528.1:ENST00000492303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.30264	3.2126349999999997	4.12263	0.0165402	0.00591451	0.087611	0.0427941
chr5	37314262	37314328	6540188	0	-	0.393939	(0.39,0.42]	chr5	506572	2	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	1.99911	3.212475	4.42584	0.0477207	0.00199429	0.17993	0.0189001
chr18	10552274	10552372	16757597	0	+	0.479592	(0.455,0.49]	chr18	1381963	22	UTR3	UTR3:EXON_MRNA	NAPG	ENSG00000134265.13	ENST00000322897.11:ENST00000583367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.22282	3.2123549999999996	4.20189	0.00483628	0.00397662	0.0366328	0.0322851
chrX	68070419	68070519	19098332	0	-	0.42	(0.39,0.42]	chrX	1624706	59	INTRON	INTRON	OPHN1	ENSG00000079482.14	ENST00000680612.1:ENST00000355520.6:ENST00000679822.1:ENST00000679748.1:ENST00000681408.1:ENST00000680592.1:ENST00000484842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	68	2	2.91028	3.21233	3.51438	5.0472e-5	8.89542e-6	0.0010363	2.7461e-4
chr17	74209803	74209829	16348724	0	+	0.423077	(0.42,0.455]	chr17	1326168	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000311111.11:ENST00000584577.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	3.05889	3.2121750000000002	3.36546	0.00524205	1.77317e-6	0.0399155	6.47642e-5
chr19	52216595	52216663	17382195	0	+	0.558824	(0.53,0.59]	chr19	1445768	2	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000454220.6:ENST00000322088.11:ENST00000462990.5:ENST00000473820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	2.13829	3.2121649999999997	4.28604	0.00663709	9.59485e-6	0.046176300000000003	2.93255e-4
chr1	23073273	23073338	97681	0	+	0.353846	(0.33,0.36]	chr1	11281	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.48427	3.21212	3.93997	0.00150101	9.37165e-5	0.0152367	0.00186979
chr17	28880277	28880371	16488321	0	-	0.468085	(0.455,0.49]	chr17	1348326	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	183	2	2.75895	3.212105	3.66526	6.17491e-6	4.84146e-9	2.02539e-4	4.12479e-7
chr6	135029385	135029485	7976281	0	-	0.32	(0.29,0.33]	chr6	609772	23	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	3.10761	3.21207	3.31653	0.00261621	6.03128e-4	0.0238929	0.00754033
chr1	43978007	43978103	169391	0	+	0.510417	(0.49,0.53]	chr1	21858	1	UTR3	UTR3:EXON_MRNA	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	35	2	2.30121	3.21192	4.12263	0.00591451	0.00182399	0.0427941	0.0176208
chr17	7572751	7572841	16105612	0	+	0.622222	(0.59,1]	chr17	1296929	5	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000584054.5:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000580461.5:ENST00000580886.5:ENST00000579139.1:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000582213.5:ENST00000579085.5:ENST00000577269.5:ENST00000584784.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	2	48	2	3.19	3.21174	3.23348	0.0039188	0.00352837	0.0314356	0.0298518
chr1	25294451	25294547	903340	0	-	0.541667	(0.53,0.59]	chr1	93966	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RSRP1:SDHDP6	ENSG00000117616.18:ENSG00000224183.1	ENST00000473314.6:ENST00000561867.1:ENST00000568996.1:ENST00000414693.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	22	2	2.2596	3.211715	4.16383	0.0185443	0.00659193	0.0948733	0.0454205
chr10	79314356	79314454	11148592	0	+	0.55102	(0.53,0.59]	chr10	847412	2	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.2596	3.211715	4.16383	0.0185443	0.00659193	0.0948733	0.0454205
chr12	57532212	57532263	13356860	0	-	0.568627	(0.53,0.59]	chr12	1052772	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5:ENST00000550750.2:ENST00000551611.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.2596	3.211715	4.16383	0.0185443	0.00659193	0.0948733	0.0454205
chr5	138430336	138430425	6244602	0	+	0.539326	(0.53,0.59]	chr5	486594	2	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.2596	3.211715	4.16383	0.0185443	0.00659193	0.0948733	0.0454205
chr5	150711148	150711248	6914737	0	-	0.54	(0.53,0.59]	chr5	529277	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.2596	3.211715	4.16383	0.0185443	0.00659193	0.0948733	0.0454205
chr5	151794214	151794249	6299648	0	+	0.571429	(0.53,0.59]	chr5	491914	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000676590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.2596	3.211715	4.16383	0.0185443	0.00659193	0.0948733	0.0454205
chr16	75014967	75015067	15740035	0	+	0.29	[0,0.29]	chr16	1254098	122	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	3.13753	3.21168	3.28583	0.00396668	0.00346525	0.0317467	0.0293796
chr6	7249745	7249842	7031373	0	+	0.257732	[0,0.29]	chr6	538755	9	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000611109.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.13753	3.21168	3.28583	0.00396668	0.00346525	0.0317467	0.0293796
chr10	17237229	17237271	10938857	0	+	0.380952	(0.36,0.39]	chr10	833014	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	78	2	2.19449	3.21166	4.22883	0.00263771	2.19295e-8	0.0239302	1.52497e-6
chr2	101892625	101892723	1959569	0	+	0.357143	(0.33,0.36]	chr2	186182	15	UTR3	UTR3:EXON_MRNA	MAP4K4	ENSG00000071054.16	ENST00000350878.8:ENST00000350198.8:ENST00000324219.8:ENST00000302217.9:ENST00000625522.2:ENST00000413150.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.6995	3.211575	3.72365	0.017838	3.19155e-4	0.0934844	0.00491578
chr7	50403013	50403112	8279161	0	+	0.353535	(0.33,0.36]	chr7	630737	25	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.12835	3.21137	4.29439	0.00459785	9.429e-6	0.0351308	2.89287e-4
chr16	24824000	24824097	15603093	0	+	0.402062	(0.39,0.42]	chr16	1237217	3	UTR3	UTR3:EXON_MRNA:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000569098.1:ENST00000464539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	3.19588	3.2112499999999997	3.22662	0.00321212	0.00257296	0.0280721	0.0229363
chr16	15104489	15104579	15864309	0	-	0.555556	(0.53,0.59]	chr16	1267671	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	NPIPP1	ENSG00000188599.17	ENST00000534799.6:ENST00000547107.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	30	2	3.11275	3.21109	3.30943	0.00407571	0.0018255	0.032143	0.0183913
chr13	95209515	95209597	14111287	0	-	0.536585	(0.53,0.59]	chr13	1104460	2	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.1234	3.211075	3.29875	0.00390623	0.00191422	0.0322851	0.018324
chr1	113114786	113114876	413570	0	+	0.377778	(0.36,0.39]	chr1	40831	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	3.02397	3.211	3.39803	0.00674398	0.00122711	0.0461258	0.0130695
chr9	121353219	121353302	10836546	0	-	0.385542	(0.36,0.39]	chr9	821004	1	CDS	CDS:EXON_MRNA:INTRON	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5:ENST00000347359.3	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.02397	3.211	3.39803	0.00674398	0.00122711	0.0461258	0.0130695
chr12	56271789	56271881	13349834	0	-	0.532609	(0.53,0.59]	chr12	1051000	2	UTR3	UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	99	2	2.74071	3.21098	3.68125	7.83491e-5	2.50815e-6	0.00148897	9.54774e-5
chr15	90911458	90911550	15103661	0	+	0.663043	(0.59,1]	chr15	1188731	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000360468.7:ENST00000557865.5:ENST00000560616.5:ENST00000558171.1:ENST00000561240.1:ENST00000559374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	82	2	3.13288	3.210745	3.28861	0.0028753	1.67777e-4	0.0256141	0.00273359
chr12	56106989	56107042	12898026	0	+	0.415094	(0.39,0.42]	chr12	1004135	1	CDS	CDS:EXON_MRNA	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5:ENST00000551061.1:ENST00000550166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	1.65028	3.2106700000000004	4.77106	0.0292034	3.03764e-4	0.128158	0.00472028
chr17	75042550	75042650	16682074	0	-	0.46	(0.455,0.49]	chr17	1372895	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP5PD	ENSG00000167863.12	ENST00000344546.8:ENST00000301587.9:ENST00000538432.2:ENST00000582341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	2.51261	3.21067	3.90873	0.00280343	3.66904e-6	0.0242354	1.30734e-4
chr11	62625616	62625715	12409691	0	-	0.525253	(0.49,0.53]	chr11	961223	9	UTR3	UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	84	2	2.13333	3.21057	4.28781	0.0012617	2.05323e-7	0.013837	1.04036e-5
chr11	118505262	118505361	12158968	0	+	0.484848	(0.455,0.49]	chr11	937104	30	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	3.09445	3.21041	3.32637	6.1765e-4	1.64563e-4	0.00822794	0.00269001
chr16	3674338	3674416	15830647	0	-	0.589744	(0.53,0.59]	chr16	1263646	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000570514.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	3.20114	3.210275	3.21941	0.00266171	6.63641e-5	0.0240332	0.00129398
chr17	35650614	35650701	16206755	0	+	0.482759	(0.455,0.49]	chr17	1309085	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1:ENST00000587805.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	2.35972	3.210275	4.06083	0.0058634	3.56832e-5	0.0427941	7.81595e-4
chr7	96121190	96121290	8935581	0	-	0.43	(0.42,0.455]	chr7	681932	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000494085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	3.10874	3.210175	3.31161	0.00186138	5.40397e-4	0.018635	0.00688813
chr16	70271876	70271972	15997089	0	-	0.541667	(0.53,0.59]	chr16	1284672	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	91	2	2.80925	3.21007	3.61089	9.93858e-5	4.22829e-6	0.00195926	1.34682e-4
chrX	120163457	120163533	18843938	0	+	0.434211	(0.42,0.455]	chrX	1605749	1	CDS	CDS:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	3.04003	3.209825	3.37962	7.68268e-4	1.2947e-4	0.00916171	0.00242147
chr12	56159974	56160042	12898538	0	+	0.5	(0.49,0.53]	chr12	1004359	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000552297.5:ENST00000549017.5:ENST00000549566.5:ENST00000547703.5:ENST00000550697.6:ENST00000547649.5:ENST00000536128.5:ENST00000548725.5:ENST00000547408.5:ENST00000551589.5:ENST00000550639.1:ENST00000548400.5:ENST00000549392.5:ENST00000548293.5:ENST00000546845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	135	2	2.90266	3.20981	3.51696	7.33876e-6	1.94449e-7	2.33812e-4	9.92968e-6
chr1	230997120	230997163	751411	0	+	0.488372	(0.455,0.49]	chr1	76381	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	2.61558	3.20959	3.8036	0.00184897	1.59194e-4	0.0185736	0.00263091
chr6	32185605	32185702	7664816	0	-	0.371134	(0.36,0.39]	chr6	586181	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PBX2:XXbac-BPG300A18.13	ENSG00000204304.12:ENSG00000273333.2	ENST00000375050.6:ENST00000559458.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	67	2	3.0625	3.209175	3.3558500000000002	2.39157e-5	9.79786e-6	5.64568e-4	2.98194e-4
chr1	28038838	28038903	911938	0	-	0.4	(0.39,0.42]	chr1	95387	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	1.77926	3.2090449999999997	4.63883	0.0429531	5.68159e-4	0.161091	0.0077844
chr8	100153414	100153512	9518812	0	+	0.408163	(0.39,0.42]	chr8	723526	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLR2K	ENSG00000147669.11	ENST00000519765.1:ENST00000353107.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	1.77926	3.2090449999999997	4.63883	0.0429531	5.68159e-4	0.161091	0.0077844
chr1	231364242	231364341	1548242	0	-	0.353535	(0.33,0.36]	chr1	155129	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	3.15976	3.20898	3.2582	0.00437542	0.00230915	0.0340502	0.0211205
chr1	6185310	6185407	842287	0	-	0.402062	(0.39,0.42]	chr1	84886	4	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	3.18738	3.208975	3.23057	3.34829e-4	7.15306e-5	0.00509483	0.00137393
chr1	149840653	149840746	1286934	0	-	0.55914	(0.53,0.59]	chr1	127827	13	UTR3	UTR3:EXON_MRNA	H3C14	ENSG00000203811.1	ENST00000369158.1	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	3.17542	3.2089600000000003	3.2425	3.78824e-4	2.6381e-4	0.00525548	0.00427022
chr12	76047233	76047333	13423844	0	-	0.33	(0.29,0.33]	chr12	1056597	108	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7	protein_coding	protein_coding	protein_coding	protein_coding	11	78	2	3.18218	3.208615	3.23505	1.0759e-4	7.15382e-7	0.00207122	3.00486e-5
chr5	127552113	127552212	6205030	0	+	0.272727	[0,0.29]	chr5	483456	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2:ENST00000513427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	65	2	2.83146	3.20857	3.58568	8.35785e-5	8.15368e-6	0.00171841	2.3296e-4
chrX	47583515	47583536	18687888	0	+	0.571429	(0.53,0.59]	chrX	1593553	1	CDS	CDS:EXON_MRNA:INTRON	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5:ENST00000441738.1	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.72478	3.20851	3.69224	0.00324675	1.78865e-5	0.0282494	4.45448e-4
chr12	48936308	48936405	13322602	0	-	0.515464	(0.49,0.53]	chr12	1045238	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	2.28265	3.208425	4.1342	0.00205195	6.96953e-7	0.0201238	2.93629e-5
chr19	18031631	18031724	17256839	0	+	0.516129	(0.49,0.53]	chr19	1424994	11	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	23	2	1.9035	3.20831	4.51312	0.0295204	0.00156636	0.129773	0.0156889
chr7	128089556	128089624	8519349	0	+	0.617647	(0.59,1]	chr7	649815	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5:ENST00000485871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	131	2	2.92934	3.208265	3.48719	1.28347e-4	8.94753e-5	0.00241206	0.00165983
chr14	102050518	102050573	14495929	0	+	0.527273	(0.49,0.53]	chr14	1133288	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	1.78308	3.20823	4.63338	0.0425234	9.56909e-4	0.167547	0.010724
chr22	21696350	21696449	18303774	0	+	0.636364	(0.59,1]	chr22	1554386	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1:ENST00000680573.1:ENST00000462188.1:ENST00000681027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	3.0542	3.208215	3.36223	0.00663549	0.00203572	0.0456243	0.0192213
chr5	160427793	160427873	6338718	0	+	0.5625	(0.53,0.59]	chr5	493684	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	82	2	3.17379	3.208145	3.2425	2.6381e-4	8.38179e-6	0.00427022	2.38248e-4
chr2	108763533	108763632	1982943	0	+	0.434343	(0.42,0.455]	chr2	188310	4	CDS	CDS:EXON_MRNA	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.57051	3.207945	3.84538	0.0265466	1.2691e-4	0.120071	0.00219756
chr6	116278616	116278708	7908899	0	-	0.445652	(0.42,0.455]	chr6	605659	1	CDS	CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.57051	3.207945	3.84538	0.0265466	1.2691e-4	0.120071	0.00219756
chr8	70573597	70573693	9881271	0	-	0.40625	(0.39,0.42]	chr8	746911	5	UTR3	UTR3:EXON_MRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	3.0503	3.207765	3.36523	0.00570576	2.21919e-5	0.0424438	5.28886e-4
chr7	103471876	103471969	8962945	0	-	0.408602	(0.39,0.42]	chr7	686032	2	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.27012	3.207445	4.14477	0.00945558	2.09513e-5	0.0594007	5.04211e-4
chr3	195784944	195785043	4661116	0	-	0.606061	(0.59,1]	chr3	385270	63	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	1.87297	3.2074	4.54183	0.0308113	0.0070583	0.130016	0.0478044
chr9	35706767	35706833	10639553	0	-	0.606061	(0.59,1]	chr9	805027	1	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.87297	3.2074	4.54183	0.0308113	0.0070583	0.130016	0.0478044
chr6	31733618	31733672	7662139	0	-	0.592593	(0.59,1]	chr6	585132	2	CDS	CDS:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.63214	3.2070100000000004	3.78188	0.005622	3.33896e-4	0.0421873	0.00472923
chr11	71435190	71435282	12444398	0	-	0.5	(0.49,0.53]	chr11	966970	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	2.87268	3.20693	3.54118	0.00175078	4.50577e-5	0.0180053	9.4221e-4
chr1	220033579	220033658	1511351	0	-	0.329114	(0.29,0.33]	chr1	151117	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	55	2	2.85656	3.2069099999999997	3.55726	9.79425e-4	1.24361e-6	0.0116574	4.81441e-5
chr13	25313613	25313682	13647676	0	+	0.449275	(0.42,0.455]	chr13	1075858	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000495460.1:ENST00000381747.7:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	3.05889	3.2069	3.35491	0.00524205	1.39104e-4	0.0399155	0.00235518
chr18	74390048	74390131	17179097	0	-	0.626506	(0.59,1]	chr18	1409850	3	EXON_PSEUDO	EXON_PSEUDO	FAUP1	ENSG00000235297.3	ENST00000474180.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	49	2	2.84944	3.20668	3.56392	0.0128238	8.86707e-4	0.0719798	0.0101815
chr14	32484536	32484624	14571977	0	-	0.397727	(0.39,0.42]	chr14	1141842	6	EXON_PSEUDO	EXON_PSEUDO	MTCO1P2	ENSG00000259045.1	ENST00000554243.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	42	2	2.74243	3.20663	3.67083	0.00369167	1.93844e-5	0.030936	4.72961e-4
chr19	38837593	38837651	17561075	0	-	0.482759	(0.455,0.49]	chr19	1475065	1	CDS	CDS:UTR3:EXON_MRNA	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	2.19092	3.2065900000000003	4.22226	0.00318608	1.23185e-5	0.0267172	3.58356e-4
chr1	88857393	88857487	1155993	0	-	0.340426	(0.33,0.36]	chr1	113983	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTF2B	ENSG00000137947.12	ENST00000370500.10:ENST00000448623.5:ENST00000494819.5:ENST00000418217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.28465	3.206525	4.1284	0.0188404	0.00407303	0.0958835	0.0324137
chr3	33085226	33085326	4111854	0	-	0.36	(0.33,0.36]	chr3	343553	76	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.28465	3.206525	4.1284	0.0188404	0.00407303	0.0958835	0.0324137
chr4	154539104	154539158	5744258	0	-	0.351852	(0.33,0.36]	chr4	453835	1	CDS	CDS:EXON_MRNA	PLRG1	ENSG00000171566.12	ENST00000499023.7:ENST00000506627.5:ENST00000503251.5:ENST00000302078.9:ENST00000507125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.28465	3.206525	4.1284	0.0188404	0.00407303	0.0958835	0.0324137
chr11	65287715	65287777	11983534	0	+	0.516129	(0.49,0.53]	chr11	920179	1	CDS	CDS:UTR3:EXON_MRNA	POLA2:RP11-867O8.9	ENSG00000014138.9:ENSG00000285816.1	ENST00000527850.5:ENST00000649896.1:ENST00000265465.8:ENST00000527618.5:ENST00000525924.1:ENST00000533192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.72252	3.206445	3.69037	0.0226513	0.0161474	0.10505	0.0860154
chr11	118506547	118506646	12158981	0	+	0.50505	(0.49,0.53]	chr11	937104	43	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000534085.2:ENST00000647944.1:ENST00000649878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.72252	3.206445	3.69037	0.0226513	0.0161474	0.10505	0.0860154
chr4	1813735	1813834	5280240	0	-	0.50505	(0.49,0.53]	chr4	425052	24	UTR3	UTR3:EXON_MRNA	LETM1	ENSG00000168924.15	ENST00000302787.3	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.72252	3.206445	3.69037	0.0226513	0.0161474	0.10505	0.0860154
chr8	27822403	27822488	9771265	0	-	0.388235	(0.36,0.39]	chr8	738668	2	CDS	CDS:EXON_MRNA:INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.94781	3.20639	3.46497	0.00105709	3.10006e-4	0.0123035	0.0044733
chr17	76565057	76565154	16359200	0	+	0.443299	(0.42,0.455]	chr17	1328581	21	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000667091.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	8	74	2	3.06355	3.206365	3.34918	4.61273e-5	6.39038e-6	9.58657e-4	2.08396e-4
chr1	27207314	27207410	112127	0	+	0.458333	(0.455,0.49]	chr1	13534	5	EXON_PSEUDO	EXON_PSEUDO	NPM1P39	ENSG00000225159.1	ENST00000449818.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	67	2	2.88121	3.206225	3.53124	1.57495e-4	6.91417e-6	0.002844	2.03942e-4
chr10	5813258	5813346	11352938	0	-	0.727273	(0.59,1]	chr10	865792	1	UTR5	UTR5:EXON_MRNA:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	5	102	2	2.82148	3.206185	3.59089	7.99341e-4	7.45913e-5	0.00939703	0.00156884
chr17	41771754	41771854	16543160	0	-	0.57	(0.53,0.59]	chr17	1356318	1	CDS_START	CDS_START:CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000449889.5:ENST00000437187.5:ENST00000420370.5:ENST00000424457.5:ENST00000591690.5:ENST00000437369.5:ENST00000589036.1:ENST00000465293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	1.97928	3.206035	4.43279	0.0218546	0.0026472	0.104785	0.0231864
chr9	104139410	104139506	10395376	0	+	0.302083	(0.29,0.33]	chr9	783184	2	UTR3	UTR3:EXON_MRNA	SMC2	ENSG00000136824.19	ENST00000286398.11:ENST00000374793.8:ENST00000374787.7:ENST00000493955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.9319	3.2059550000000003	3.48001	0.00145571	0.00126219	0.0148357	0.013837
chr9	97983340	97983411	10381009	0	+	0.647887	(0.59,1]	chr9	781848	1	UTR5	UTR5:EXON_MRNA	ANP32B	ENSG00000136938.9	ENST00000339399.5	protein_coding	protein_coding	protein_coding	protein_coding	45	872	2	2.95193	3.20593	3.45993	2.64148e-6	1.84836e-8	9.97168e-5	1.32469e-6
chr15	41306134	41306234	14885482	0	+	0.33	(0.29,0.33]	chr15	1169280	82	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	11	50	2	1.95783	3.2058850000000003	4.45394	0.00208261	3.60081e-6	0.0195707	1.29307e-4
chr2	9585002	9585096	2508164	0	-	0.308511	(0.29,0.33]	chr2	226349	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	59	2	2.20189	3.205805	4.20972	0.00113851	3.5038e-7	0.0129849	1.63119e-5
chr1	52020842	52020932	1018060	0	-	0.411111	(0.39,0.42]	chr1	105390	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1:ENST00000472624.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.2627100000000002	3.205785	4.14886	0.0192666	0.00415881	0.0966228	0.0325842
chr6	31797989	31798049	7662601	0	-	0.416667	(0.39,0.42]	chr6	585355	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.2627100000000002	3.205785	4.14886	0.0192666	0.00415881	0.0966228	0.0325842
chr19	48921238	48921324	17367835	0	+	0.697674	(0.59,1]	chr19	1442150	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000465524.5:ENST00000469291.1:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	103	2	2.72343	3.2055350000000002	3.68764	0.00125966	4.42534e-5	0.0133806	0.00102453
chr19	8316552	8316609	17449650	0	-	0.561404	(0.53,0.59]	chr19	1458613	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CTD-2550O8.5:NDUFA7	ENSG00000167774.2:ENSG00000267855.6	ENST00000598884.1:ENST00000593729.5:ENST00000601101.5:ENST00000595856.5:ENST00000602059.1:ENST00000301457.3:ENST00000601258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.78899	3.205515	3.62204	0.00245784	4.3021e-4	0.0221765	0.00620274
chr13	99562857	99562956	13865657	0	+	0.363636	(0.36,0.39]	chr13	1087238	2	UTR3	UTR3:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	3.10506	3.205485	3.30591	7.38785e-4	1.89047e-4	0.00924579	0.003022
chr2	128127360	128127452	2059846	0	+	0.380435	(0.36,0.39]	chr2	193224	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	3.10506	3.205485	3.30591	7.38785e-4	1.89047e-4	0.00924579	0.003022
chr10	80167225	80167313	11593327	0	-	0.613636	(0.59,1]	chr10	883072	1	CDS	CDS:EXON_MRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000481805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	1.86913	3.20548	4.54183	0.0194297	0.0070583	0.0973387	0.0478044
chr12	52898825	52898899	13336928	0	-	0.621622	(0.59,1]	chr12	1048610	3	CDS	CDS:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000547031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	1.96416	3.205435	4.44671	0.044741	0.00931497	0.166115	0.0586162
chr17	7930605	7930705	16431238	0	-	0.62	(0.59,1]	chr17	1339993	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RP11-1099M24.7:TRAPPC1	ENSG00000262730.1:ENSG00000170043.12	ENST00000573621.1:ENST00000540486.5:ENST00000571739.5:ENST00000303731.9:ENST00000575639.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	1.96416	3.205435	4.44671	0.044741	0.00931497	0.166115	0.0586162
chr6	43226061	43226143	7707053	0	-	0.597561	(0.59,1]	chr6	591233	1	CDS	CDS:EXON_MRNA	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2:ENST00000505042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	25	2	2.69477	3.205215	3.71566	0.0487443	0.020208	0.175495	0.0978331
chr12	110429060	110429160	13537374	0	-	0.62	(0.59,1]	chr12	1064862	255	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	17	339	2	2.79266	3.20509	3.61752	5.48478e-5	1.17614e-7	0.0012203	6.42351e-6
chr12	122208020	122208110	13588277	0	-	0.444444	(0.42,0.455]	chr12	1069997	5	UTR3	UTR3:EXON_MRNA	RP11-512M8.12:DIABLO:RP11-512M8.13	ENSG00000284934.2:ENSG00000184047.20:ENSG00000256861.1	ENST00000645606.1:ENST00000443649.9:ENST00000650715.1:ENST00000464942.7:ENST00000353548.11:ENST00000644227.1:ENST00000644509.1:ENST00000342392.3:ENST00000535844.1:ENST00000645569.1:ENST00000267169.11:ENST00000489781.3:ENST00000540535.6:ENST00000642640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	2.61136	3.205085	3.79881	3.33599e-4	1.65328e-4	0.00472923	0.0029267300000000002
chr11	75572083	75572183	12023391	0	+	0.61	(0.59,1]	chr11	927027	1	UTR3	UTR3:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	103	2	1.66201	3.2049649999999996	4.74792	0.0277662	1.6813e-6	0.125327	6.18007e-5
chr7	99394652	99394734	8422353	0	+	0.329268	(0.29,0.33]	chr7	641904	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP5-900K19.2:ARPC1B	ENSG00000284292.1:ENSG00000130429.15	ENST00000638617.1:ENST00000443222.6:ENST00000645391.1:ENST00000455009.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000481997.5:ENST00000491294.1:ENST00000463078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	20	2	1.71387	3.204585	4.6953	0.0355849	4.88271e-4	0.147262	0.00638318
chr11	47468917	47469017	12386797	0	-	0.51	(0.49,0.53]	chr11	956932	31	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	6	64	2	2.93282	3.204515	3.47621	3.30011e-4	1.03289e-5	0.00504024	2.84417e-4
chr3	150571957	150572052	3807844	0	+	0.368421	(0.36,0.39]	chr3	325029	1	CDS	CDS:UTR3:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5:ENST00000465535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.37674	3.2044699999999997	4.0322	0.00588589	0.00529284	0.0427941	0.0390084
chr17	80561974	80562074	16374025	0	+	0.45	(0.42,0.455]	chr17	1331043	158	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.70611	3.20442	3.70273	0.0215502	0.00397496	0.102904	0.0322851
chr1	28035611	28035680	911905	0	-	0.449275	(0.42,0.455]	chr1	95381	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	51	2	2.69502	3.204335	3.71365	2.63375e-4	2.01357e-4	0.00427022	0.00317801
chr9	97931023	97931122	10759661	0	-	0.444444	(0.42,0.455]	chr9	814691	11	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	3.20349	3.204335	3.20518	6.88593e-5	6.20987e-6	0.00146004	1.85694e-4
chr1	179917451	179917549	580797	0	+	0.489796	(0.455,0.49]	chr1	60265	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000474875.5:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.69053	3.204255	3.71798	0.0202679	0.0182983	0.0984041	0.0925808
chr14	93227332	93227431	14463347	0	+	0.474747	(0.455,0.49]	chr14	1129401	4	UTR3	UTR3:EXON_MRNA	UBR7	ENSG00000012963.15	ENST00000013070.11	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.69053	3.204255	3.71798	0.0202679	0.0182983	0.0984041	0.0925808
chr7	105110476	105110539	8449858	0	+	0.460317	(0.455,0.49]	chr7	645356	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8:ENST00000478079.1:ENST00000473063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.69053	3.204255	3.71798	0.0202679	0.0182983	0.0984041	0.0925808
chr9	34617895	34617971	10637402	0	-	0.460526	(0.455,0.49]	chr9	804292	4	CDS	CDS:EXON_MRNA	DCTN3	ENSG00000137100.16	ENST00000378916.8:ENST00000259632.12:ENST00000341694.6:ENST00000421919.5:ENST00000477738.6:ENST00000378913.6:ENST00000378911.3	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.69053	3.204255	3.71798	0.0202679	0.0182983	0.0984041	0.0925808
chrX	150231457	150231553	19265095	0	-	0.489583	(0.455,0.49]	chrX	1636623	5	EXON_PSEUDO	EXON_PSEUDO	XRCC6P2	ENSG00000234825.3	ENST00000457831.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.69053	3.204255	3.71798	0.0202679	0.0182983	0.0984041	0.0925808
chr6	16148048	16148148	7067259	0	+	0.28	[0,0.29]	chr6	540868	14	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.93739	3.204135	3.47088	0.0015572	1.20888e-4	0.0165415	0.00210329
chr20	5546683	5546781	17889032	0	-	0.367347	(0.36,0.39]	chr20	1514255	24	UTR3	UTR3:EXON_MRNA	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481038.5:ENST00000418646.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	49	2	2.63115	3.203935	3.77672	0.0245975	1.05661e-6	0.114841	4.18995e-5
chr2	168871430	168871530	3002545	0	-	0.38	(0.36,0.39]	chr2	265630	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.94286	3.2039150000000003	3.46497	0.00128446	0.00105709	0.0136229	0.0123035
chr3	44750641	44750741	4149065	0	-	0.38	(0.36,0.39]	chr3	346666	20	UTR3	UTR3:EXON_MRNA:INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.94286	3.2039150000000003	3.46497	0.00128446	0.00105709	0.0136229	0.0123035
chr1	21836937	21837006	890769	0	-	0.724638	(0.59,1]	chr1	92288	3	CDS	CDS:EXON_MRNA:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.50936	3.203885	3.89841	0.00161521	1.91539e-4	0.016933900000000002	0.00304814
chr17	1361091	1361160	16398541	0	-	0.434783	(0.42,0.455]	chr17	1334251	1	CDS	CDS:EXON_MRNA:INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	126	2	3.19545	3.2037050000000002	3.21196	2.7221e-6	6.03448e-7	1.02298e-4	2.60109e-5
chr1	11088122	11088198	859375	0	-	0.434211	(0.42,0.455]	chr1	86874	1	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.99666	3.203535	3.41041	0.00104775	1.00299e-4	0.0123035	0.00180803
chr3	16260373	16260470	4056021	0	-	0.309278	(0.29,0.33]	chr3	340906	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DPH3	ENSG00000154813.10	ENST00000488423.2:ENST00000383775.4:ENST00000285082.8:ENST00000462982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.85656	3.203525	3.55049	9.79425e-4	6.15323e-4	0.0116574	0.00765848
chr10	70694235	70694334	11101671	0	+	0.484848	(0.455,0.49]	chr10	844461	189	INTRON	INTRON	ADAMTS14	ENSG00000138316.11	ENST00000373207.2:ENST00000373208.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr12	54517805	54517871	12893843	0	+	0.469697	(0.455,0.49]	chr12	1003141	1	CDS	CDS:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr16	58537890	58537975	15966409	0	-	0.470588	(0.455,0.49]	chr16	1281114	1	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr17	30266878	30266954	16495944	0	-	0.486842	(0.455,0.49]	chr17	1349321	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5:ENST00000577623.5:ENST00000579957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr17	81702041	81702121	16381128	0	+	0.4625	(0.455,0.49]	chr17	1331936	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000678658.1:ENST00000677159.1:ENST00000573949.1:ENST00000678607.1:ENST00000573320.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr4	94667270	94667365	4985300	0	+	0.473684	(0.455,0.49]	chr4	407482	14	UTR3	UTR3:EXON_MRNA	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000317968.9	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr4	123316350	123316450	5092175	0	+	0.47	(0.455,0.49]	chr4	413181	24	UTR3	UTR3:EXON_MRNA	SPATA5	ENSG00000145375.9	ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr5	119171777	119171873	6175659	0	+	0.46875	(0.455,0.49]	chr5	481717	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8:ENST00000507552.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr7	141407528	141407628	8573478	0	+	0.47	(0.455,0.49]	chr7	654057	549	INTRON	INTRON	TMEM178B	ENSG00000261115.6	ENST00000565468.6:ENST00000610315.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr8	94827284	94827384	9489314	0	+	0.48	(0.455,0.49]	chr8	721983	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	INTS8	ENSG00000164941.14	ENST00000522171.5:ENST00000523808.5:ENST00000521860.5:ENST00000523731.6:ENST00000519457.5:ENST00000519053.5:ENST00000524333.5:ENST00000523321.5:ENST00000343161.8:ENST00000523206.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chrX	21882555	21882655	18609119	0	+	0.47	(0.455,0.49]	chrX	1589337	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MBTPS2	ENSG00000012174.12	ENST00000379484.10	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.30139	3.2033699999999996	4.10535	0.0530131	0.0064531	0.195536	0.0450905
chr19	14092378	14092477	17478350	0	-	0.575758	(0.53,0.59]	chr19	1464173	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKACA	ENSG00000072062.15	ENST00000308677.9:ENST00000677951.1:ENST00000677971.1:ENST00000350356.7:ENST00000590853.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	1.96733	3.20298	4.43863	0.022694	0.00254763	0.105117	0.0233955
chr12	6522914	6523002	12713463	0	+	0.579545	(0.53,0.59]	chr12	986570	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000538600.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	42	2	3.02054	3.20296	3.38538	0.00577011	1.18366e-4	0.0426551	0.00207204
chr14	67651314	67651412	14361582	0	+	0.408163	(0.39,0.42]	chr14	1122684	5	UTR3	UTR3:EXON_MRNA	ARG2	ENSG00000081181.8	ENST00000261783.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.46573	3.202845	3.93996	0.00841622	0.00349672	0.054565	0.0288123
chr12	120197321	120197383	13579735	0	-	0.516129	(0.49,0.53]	chr12	1068801	1	CDS	CDS:UTR3:EXON_MRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000551217.1:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	171	2	3.16377	3.20251	3.24125	4.49102e-7	3.31294e-7	2.25115e-5	1.56277e-5
chr17	7511405	7511496	16105283	0	+	0.516484	(0.49,0.53]	chr17	1296781	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.72252	3.20249	3.68246	0.0161474	3.06313e-4	0.0860154	0.00442973
chr20	3805444	3805541	17658709	0	+	0.505155	(0.49,0.53]	chr20	1492996	6	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.72252	3.20249	3.68246	0.0161474	3.06313e-4	0.0860154	0.00442973
chr3	40457889	40457940	3429573	0	+	0.607843	(0.59,1]	chr3	298311	1	CDS	CDS:UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000465325.1:ENST00000396203.7:ENST00000416518.1:ENST00000435633.5:ENST00000479563.5:ENST00000465280.1:ENST00000481798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	417	2	2.85374	3.202385	3.55103	2.73874e-5	7.26953e-8	6.95757e-4	4.24825e-6
chr2	9584531	9584625	2508159	0	-	0.404255	(0.39,0.42]	chr2	226349	7	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.31773	3.202375	4.08702	0.00382583	3.01232e-5	0.0319415	6.78876e-4
chr11	62629295	62629395	12409744	0	-	0.54	(0.53,0.59]	chr11	961258	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.94125	3.20237	3.46349	0.0012261800000000001	9.2216e-4	0.0135648	0.0104432
chr1	160325542	160325585	1329060	0	-	0.418605	(0.39,0.42]	chr1	136094	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.88836	3.20236	3.51636	0.0102432	6.99837e-4	0.062872	0.00846751
chr8	47783741	47783809	9815574	0	-	0.573529	(0.53,0.59]	chr8	742495	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000432581.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.72478	3.202355	3.67993	0.00324675	3.22778e-4	0.0282494	0.0046122
chrX	48923077	48923173	19063680	0	-	0.583333	(0.53,0.59]	chrX	1620616	12	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OTUD5	ENSG00000068308.14	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000610466.4:ENST00000428668.2	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.72478	3.202355	3.67993	0.00324675	3.22778e-4	0.0282494	0.0046122
chr22	19507451	19507517	18295648	0	+	0.575758	(0.53,0.59]	chr22	1552783	2	CDS	CDS:UTR3:EXON_MRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.64837	3.20226	3.75615	0.0199467	2.16536e-4	0.0984041	0.00361336
chr1	668994	669094	823721	0	-	0.63	(0.59,1]	chr1	81486	360	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	23	2	2.28778	3.2022500000000003	4.11672	0.0556537	0.0222273	0.191528	0.105595
chr16	29484386	29484486	15909895	0	-	0.63	(0.59,1]	chr16	1274264	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RP11-345J4.11:NPIPB12	ENSG00000288632.1:ENSG00000169203.16	ENST00000675579.1:ENST00000458643.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	23	2	2.28778	3.2022500000000003	4.11672	0.0556537	0.0222273	0.191528	0.105595
chr19	47065467	47065566	17595806	0	-	0.606061	(0.59,1]	chr19	1481489	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000601973.1:ENST00000594019.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.28778	3.2022500000000003	4.11672	0.0556537	0.0222273	0.191528	0.105595
chr19	49909120	49909218	17608187	0	-	0.622449	(0.59,1]	chr19	1484492	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	IL4I1:NUP62	ENSG00000104951.16:ENSG00000213024.12	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	23	2	2.28778	3.2022500000000003	4.11672	0.0556537	0.0222273	0.191528	0.105595
chr3	50607706	50607793	4179547	0	-	0.597701	(0.59,1]	chr3	352075	1	CDS	CDS:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.28778	3.2022500000000003	4.11672	0.0556537	0.0222273	0.191528	0.105595
chr5	150400108	150400208	6294954	0	+	0.64	(0.59,1]	chr5	491342	4	UTR3	UTR3:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000427724.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.28778	3.2022500000000003	4.11672	0.0556537	0.0222273	0.191528	0.105595
chr10	102160909	102161001	11226664	0	+	0.554348	(0.53,0.59]	chr10	854863	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.65894	3.2021800000000002	3.74542	0.0193255	2.30148e-4	0.0943643	0.00352524
chr19	40627704	40627780	17330522	0	+	0.697368	(0.59,1]	chr19	1436070	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000595118.5:ENST00000318809.11:ENST00000599225.1:ENST00000598166.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	3.06258	3.202145	3.34171	0.00616167	0.00234977	0.0438642	0.0222173
chr17	61955381	61955474	16628329	0	-	0.365591	(0.36,0.39]	chr17	1366835	1	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7:ENST00000582786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.63115	3.202085	3.77302	0.0245975	0.0162599	0.114841	0.0866586
chr17	75136201	75136250	16682159	0	-	0.530612	(0.53,0.59]	chr17	1372926	1	CDS	CDS:UTR3:EXON_MRNA	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481094.1:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	3.0099	3.2020299999999997	3.39416	0.00600486	0.00126006	0.042887	0.013837
chr11	4092927	4093021	11774003	0	+	0.5	(0.49,0.53]	chr11	900920	13	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.72252	3.2016999999999998	3.68088	0.0161474	1.82756e-5	0.0860154	4.52458e-4
chr17	82850120	82850220	16386363	0	+	0.56	(0.53,0.59]	chr17	1332978	36	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.7898	3.20137	3.61294	0.0310038	0.0128364	0.130016	0.0719798
chr19	14743615	14743699	17482290	0	-	0.571429	(0.53,0.59]	chr19	1464767	1	CDS	CDS:EXON_MRNA	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.7898	3.20137	3.61294	0.0310038	0.0128364	0.130016	0.0719798
chr4	87047308	87047403	4940217	0	+	0.547368	(0.53,0.59]	chr4	405698	6	CDS	CDS:EXON_MRNA:INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.7898	3.20137	3.61294	0.0310038	0.0128364	0.130016	0.0719798
chr7	157267584	157267655	8636750	0	+	0.577465	(0.53,0.59]	chr7	659765	1	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000474153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.7898	3.20137	3.61294	0.0310038	0.0128364	0.130016	0.0719798
chr12	123295807	123295907	13595076	0	-	0.32	(0.29,0.33]	chr12	1070977	68	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.77585	3.20134	3.62683	0.0143131	6.18968e-4	0.0780602	0.00822794
chr10	92633708	92633795	11192070	0	+	0.287356	[0,0.29]	chr10	851065	2	CDS	CDS:UTR3:EXON_MRNA	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	1.94841	3.2013	4.45419	0.0427374	0.00133426	0.168094	0.0139317
chr12	120201054	120201144	13579782	0	-	0.622222	(0.59,1]	chr12	1068823	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000550856.5:ENST00000547191.5:ENST00000552902.5:ENST00000548495.5:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	72	1327	2	3.18264	3.20121	3.21978	2.08262e-7	5.69238e-8	1.17919e-5	3.43356e-6
chr1	109426301	109426330	1220628	0	-	0.482759	(0.455,0.49]	chr1	119117	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	2.84202	3.2011950000000002	3.56037	5.72551e-4	5.41187e-4	0.0078026	0.00689416
chr5	154815558	154815655	6315026	0	+	0.536082	(0.53,0.59]	chr5	492515	16	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	2.63323	3.201185	3.76914	2.91603e-4	1.07544e-5	0.00463214	2.9314e-4
chr7	44796724	44796793	8261607	0	+	0.623188	(0.59,1]	chr7	629455	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	250	2	3.17489	3.20076	3.22663	1.52089e-5	5.09067e-6	3.88668e-4	1.72362e-4
chr12	129109725	129109822	13153733	0	+	0.474227	(0.455,0.49]	chr12	1027739	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	32	2	2.84079	3.20058	3.56037	0.00201021	5.72551e-4	0.0190112	0.0078026
chr10	7802269	7802347	10916007	0	+	0.397436	(0.39,0.42]	chr10	831346	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	64	2	2.70128	3.20052	3.69976	5.30354e-4	1.95428e-6	0.00739546	7.00948e-5
chr2	157259052	157259149	2152114	0	+	0.360825	(0.36,0.39]	chr2	198573	10	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.97546	3.200245	4.42503	0.0239316	0.00133228	0.109927	0.0144372
chr9	83971671	83971726	10712900	0	-	0.563636	(0.53,0.59]	chr9	810498	1	CDS	CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5	protein_coding	protein_coding	protein_coding	protein_coding	8	97	2	2.76647	3.2000900000000003	3.63371	2.92577e-4	7.82822e-7	0.00464297	3.24902e-5
chr12	93506797	93506896	13019639	0	+	0.373737	(0.36,0.39]	chr12	1013494	57	UTR3	UTR3:EXON_MRNA	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	3.10506	3.1999	3.29474	0.00194306	7.38785e-4	0.0185233	0.00924579
chr17	7499038	7499100	16105136	0	+	0.516129	(0.49,0.53]	chr17	1296722	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000572844.1:ENST00000575547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	26	2	2.45798	3.199875	3.94177	0.0104929	0.00353238	0.063428	0.029076
chr2	177232487	177232583	3033076	0	-	0.479167	(0.455,0.49]	chr2	268543	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.52734	3.199835	3.87233	0.00792433	1.08465e-4	0.0523592	0.00193256
chr7	105111824	105111917	8449875	0	+	0.483871	(0.455,0.49]	chr7	645366	1	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.52734	3.199835	3.87233	0.00792433	1.08465e-4	0.0523592	0.00193256
chr22	21760652	21760752	18442357	0	-	0.41	(0.39,0.42]	chr22	1572508	11	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	10	83	2	2.90436	3.19983	3.4953	2.83804e-5	2.01012e-6	7.13776e-4	7.18317e-5
chr16	58525268	58525359	15966269	0	-	0.527473	(0.49,0.53]	chr16	1281063	2	CDS	CDS:UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000569924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.87268	3.199525	3.52637	0.00175078	6.68602e-4	0.0180053	0.00820018
chr1	225983301	225983401	1531398	0	-	0.26	[0,0.29]	chr1	153219	7	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	1.79922	3.199405	4.59959	0.0223458	7.13769e-4	0.106042	0.0085671400000000009
chr22	49623138	49623232	18544102	0	-	0.457447	(0.455,0.49]	chr22	1583967	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1:ENST00000343999.1:ENST00000400023.5:ENST00000405854.5	lncRNA	lncRNA	lncRNA	lncRNA	4	28	2	2.47392	3.199275	3.92463	0.0113417	0.00157443	0.0665375	0.016717
chr2	27309683	27309779	2569762	0	-	0.4375	(0.42,0.455]	chr2	231327	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000620797.4:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5:ENST00000405076.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	65	2	2.812	3.19923	3.58646	2.25472e-4	4.74984e-6	0.00346549	1.63715e-4
chrX	78125830	78125929	18747150	0	+	0.424242	(0.42,0.455]	chrX	1599855	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	130	2	2.95656	3.198915	3.44127	2.97026e-6	3.35198e-7	9.99199e-5	1.7658e-5
chr1	151406366	151406464	1293008	0	-	0.530612	(0.53,0.59]	chr1	129236	16	CDS	CDS:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	17	2	2.77921	3.1988849999999998	3.61856	0.0303021	0.0132865	0.129773	0.0740932
chr12	113192000	113192092	13100595	0	+	0.554348	(0.53,0.59]	chr12	1022200	3	UTR3	UTR3:EXON_MRNA	RITA1	ENSG00000139405.16	ENST00000549621.5:ENST00000552495.1:ENST00000548278.2	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.77921	3.1988849999999998	3.61856	0.0303021	0.0132865	0.129773	0.0740932
chr3	195787426	195787525	4661141	0	-	0.565657	(0.53,0.59]	chr3	385270	88	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	17	2	2.77921	3.1988849999999998	3.61856	0.0303021	0.0132865	0.129773	0.0740932
chr9	96146200	96146298	10375474	0	+	0.581633	(0.53,0.59]	chr9	781101	3	EXON_PSEUDO	EXON_PSEUDO	EIF4BP3	ENSG00000224546.2	ENST00000432132.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	17	2	2.77921	3.1988849999999998	3.61856	0.0303021	0.0132865	0.129773	0.0740932
chr1	227059411	227059511	1535389	0	-	0.31	(0.29,0.33]	chr1	153718	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDC42BPA	ENSG00000143776.19	ENST00000366766.7:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.7:ENST00000448940.5:ENST00000442054.5:ENST00000441725.1:ENST00000684580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	2.9319	3.198615	3.46533	0.00145571	2.24958e-5	0.0148357	5.90075e-4
chr11	47778826	47778918	12389332	0	-	0.315217	(0.29,0.33]	chr11	957386	9	UTR3	UTR3:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.78823	3.1985650000000003	3.6089	8.11145e-4	5.55178e-5	0.00952488	0.00123377
chr1	153974678	153974778	1300485	0	-	0.49	(0.455,0.49]	chr1	130778	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-422P24.15:JTB	ENSG00000285779.1:ENSG00000143543.15	ENST00000648921.1:ENST00000271843.9:ENST00000368589.5:ENST00000356648.5:ENST00000428469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.9967	3.198395	3.40009	0.00650423	0.00120619	0.0454205	0.0129255
chr22	36281378	36281477	18497991	0	-	0.424242	(0.42,0.455]	chr22	1578077	2	UTR3	UTR3:EXON_MRNA	MYH9	ENSG00000100345.22	ENST00000216181.11	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.63927	3.1982749999999998	4.75728	0.0455517	5.3817e-4	0.175554	0.00686676
chr2	74156271	74156369	2740233	0	-	0.306122	(0.29,0.33]	chr2	243880	39	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	3.13212	3.19817	3.26422	0.00551048	2.56761e-4	0.0414592	0.00385453
chr12	95513804	95513904	13025185	0	+	0.37	(0.36,0.39]	chr12	1014030	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.93136	3.1981650000000004	3.46497	0.00811967	0.00105709	0.0528637	0.0123035
chr11	60900581	60900636	12402801	0	-	0.545455	(0.53,0.59]	chr11	959912	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.47	3.197865	3.92573	0.0089333	8.62301e-5	0.0567495	0.00160749
chr2	96297362	96297449	2790516	0	-	0.563218	(0.53,0.59]	chr2	248821	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.47	3.197865	3.92573	0.0089333	8.62301e-5	0.0567495	0.00160749
chr1	167918128	167918225	1349098	0	-	0.340206	(0.33,0.36]	chr1	138224	16	UTR3	UTR3:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	2.62174	3.1978299999999997	3.77392	2.67879e-4	1.94583e-7	0.00432233	9.93508e-6
chr5	87391073	87391168	6076102	0	+	0.410526	(0.39,0.42]	chr5	476592	3	UTR3	UTR3:EXON_MRNA	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.49701	3.1977450000000003	3.89848	0.0339607	9.30194e-5	0.141431	0.00169783
chr17	31884423	31884505	16498628	0	-	0.378049	(0.36,0.39]	chr17	1349848	1	CDS	CDS:EXON_MRNA	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000477128.5:ENST00000583408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	3.06292	3.1976649999999998	3.33241	0.00499846	0.00193631	0.0370021	0.0192272
chr2	175926873	175926973	3028106	0	-	0.36	(0.33,0.36]	chr2	268146	31	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.88494	3.197655	3.51037	6.89291e-4	5.65559e-5	0.00876781	0.00114087
chr17	7254673	7254773	16103727	0	+	0.56	(0.53,0.59]	chr17	1296201	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ELP5	ENSG00000170291.15	ENST00000573699.5:ENST00000573513.5:ENST00000354429.6:ENST00000574255.5:ENST00000356683.6:ENST00000396627.6:ENST00000396628.6:ENST00000574993.5:ENST00000573657.5:ENST00000570322.5:ENST00000576496.5:ENST00000574841.2:ENST00000571146.2:ENST00000572104.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	40	2	2.45844	3.19746	3.93648	0.00930921	8.06385e-5	0.0587563	0.00167444
chr2	74889322	74889400	1893410	0	+	0.679487	(0.59,1]	chr2	179638	2	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.5215	3.1974150000000003	3.87333	0.0348991	0.032241	0.141505	0.135671
chr2	96305491	96305546	2790607	0	-	0.672727	(0.59,1]	chr2	248866	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.5215	3.1974150000000003	3.87333	0.0348991	0.032241	0.141505	0.135671
chr6	32837936	32838034	7667234	0	-	0.704082	(0.59,1]	chr6	586816	3	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	1	24	2	2.5215	3.1974150000000003	3.87333	0.0348991	0.032241	0.141505	0.135671
chr16	2246875	2246975	15825137	0	-	0.54	(0.53,0.59]	chr16	1262327	1	CDS_START	CDS_START:CDS:EXON_MRNA	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563029.5:ENST00000561688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	3.17542	3.197415	3.21941	0.00266171	3.78824e-4	0.0240332	0.00525548
chr1	150267956	150268041	1288660	0	-	0.505882	(0.49,0.53]	chr1	128196	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8:ENST00000461320.5:ENST00000236017.5:ENST00000476538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.49797	3.197335	3.8967	0.0128791	0.00843736	0.0725185	0.0546021
chr1	247878954	247879053	816544	0	+	0.464646	(0.455,0.49]	chr1	80729	26	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.12843	3.19733	3.26623	0.00392855	2.31662e-4	0.0322851	0.00354314
chrX	44899185	44899285	18678258	0	+	0.52	(0.49,0.53]	chrX	1592595	248	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.78962	3.19719	3.60476	0.0129044	4.52633e-4	0.0725185	0.00642319
chr11	62854452	62854536	12411584	0	-	0.321429	(0.29,0.33]	chr11	961821	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000539303.5:ENST00000545308.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	15	143	2	2.17071	3.1970349999999996	4.22336	0.00269699	1.70641e-11	0.0243391	2.80687e-9
chr9	112268121	112268195	10803376	0	-	0.418919	(0.39,0.42]	chr9	818471	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	2.98752	3.1969950000000003	3.40647	2.91053e-4	1.67145e-5	0.00462551	4.22716e-4
chr12	62022087	62022174	13366752	0	-	0.482759	(0.455,0.49]	chr12	1053591	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	TAFA2:RPS3P6	ENSG00000198673.11:ENSG00000213363.4	ENST00000416284.8:ENST00000551619.5:ENST00000549379.5:ENST00000551449.1:ENST00000552075.5:ENST00000549958.5:ENST00000548780.1:ENST00000487417.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	4	52	2	2.69053	3.196875	3.70322	0.0182983	1.91639e-6	0.0925808	6.93031e-5
chr16	67439058	67439147	15988533	0	-	0.52809	(0.49,0.53]	chr16	1283077	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0D1	ENSG00000159720.12	ENST00000568620.5:ENST00000290949.8:ENST00000602876.5:ENST00000563305.1:ENST00000565835.5:ENST00000426604.7:ENST00000540149.5:ENST00000567694.5:ENST00000561852.5:ENST00000563064.5:ENST00000564615.5:ENST00000567170.5:ENST00000566322.6:ENST00000564191.5:ENST00000564788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.8671	3.1967350000000003	3.52637	0.0100489	6.68602e-4	0.0623334	0.00820018
chr21	37223806	37223903	18244227	0	-	0.494845	(0.49,0.53]	chr21	1547397	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.8671	3.1967350000000003	3.52637	0.0100489	6.68602e-4	0.0623334	0.00820018
chr15	79322045	79322114	15043038	0	+	0.623188	(0.59,1]	chr15	1183522	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMED3	ENSG00000166557.14	ENST00000299705.10:ENST00000424155.6:ENST00000536821.5:ENST00000543455.1:ENST00000558562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.69477	3.196685	3.6986	0.020208	4.89626e-4	0.0978331	0.00639399
chr3	49099760	49099853	4172452	0	-	0.548387	(0.53,0.59]	chr3	350356	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	QARS1:MIR6890	ENSG00000172053.18:ENSG00000284488.1	ENST00000306125.12:ENST00000637281.1:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000637113.1:ENST00000636018.1:ENST00000637543.1:ENST00000634432.1:ENST00000620931.1:ENST00000482468.6:ENST00000478561.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	6	73	2	2.90632	3.19656	3.4868	3.72925e-4	1.01599e-5	0.00559101	2.80762e-4
chr16	21957491	21957566	15586753	0	+	0.44	(0.42,0.455]	chr16	1235414	2	CDS	CDS:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000630839.2:ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5:ENST00000618892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.36466	3.1961900000000005	4.02772	4.81186e-4	4.30844e-5	0.00631426	0.00100091
chr5	132758556	132758644	6836964	0	-	0.5	(0.49,0.53]	chr5	523099	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	87	2	2.47845	3.196155	3.91386	4.03082e-4	3.70757e-7	0.00593075	1.71165e-5
chr1	26854818	26854915	111482	0	+	0.556701	(0.53,0.59]	chr1	13443	11	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.99511	3.1960800000000003	3.39705	9.46531e-4	1.10308e-4	0.010681	0.00211768
chr14	94051290	94051376	14775141	0	-	0.55814	(0.53,0.59]	chr14	1157267	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000553451.1:ENST00000553400.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1:ENST00000556635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	27	2	2.23406	3.1960550000000003	4.15805	0.00870728	0.00680952	0.0558165	0.0468196
chrX	109054341	109054441	18819071	0	+	0.55	(0.53,0.59]	chrX	1603841	4	PRIMIRNA	PRIMIRNA	ENSG00000275110	ENSG00000275110.1	ENST00000611066.1	miRNA	primary_miRNA	miRNA	primary_miRNA	52	572	2	2.85747	3.19604	3.53461	2.40757e-7	2.59335e-10	1.18574e-5	3.49923e-8
chr1	93366011	93366110	356161	0	+	0.434343	(0.42,0.455]	chr1	35144	55	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.54043	3.195965	3.8515	0.0119089	0.00705852	0.0686664	0.047732
chr8	73981337	73981429	9406606	0	+	0.423913	(0.42,0.455]	chr8	718134	3	CDS	CDS:UTR3:EXON_MRNA	TMEM70	ENSG00000175606.11	ENST00000312184.6:ENST00000416961.6:ENST00000517439.1:ENST00000519551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.54043	3.195965	3.8515	0.0119089	0.00705852	0.0686664	0.047732
chr1	112912722	112912819	1232303	0	-	0.329897	(0.29,0.33]	chr1	120455	10	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	2.553	3.1956800000000003	3.83836	2.8236e-4	1.2308e-6	0.0041606	5.25619e-5
chr15	65154781	65154881	15343673	0	-	0.4	(0.39,0.42]	chr15	1211477	1	CDS	CDS:UTR3:EXON_MRNA	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000560166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	1.75252	3.1956749999999996	4.63883	0.0297286	5.68159e-4	0.130016	0.0077844
chr1	109586280	109586345	399276	0	+	0.492308	(0.49,0.53]	chr1	38887	2	CDS	CDS:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.26641	3.1956550000000004	4.1249	0.0190546	2.4461e-5	0.093872	5.72214e-4
chr12	110340742	110340826	13085848	0	+	0.619048	(0.59,1]	chr12	1020526	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	87	2	1.72824	3.1954200000000004	4.6626	0.0471232	2.85e-6	0.179872	9.64791e-5
chr21	8393432	8393531	18041464	0	+	0.525253	(0.49,0.53]	chr21	1530861	46	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2834	25464	2	3.11338	3.19514	3.2769	1.62353e-10	3.90716e-11	2.3195e-8	5.9011e-9
chr16	58551742	58551819	15966574	0	-	0.441558	(0.42,0.455]	chr16	1281192	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000567285.1:ENST00000569732.1:ENST00000562046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	28	2	1.58962	3.19513	4.80064	0.0352	3.0479e-4	0.142054	0.00472028
chr10	1000772	1000868	10898698	0	+	0.5	(0.49,0.53]	chr10	829344	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	1.75643	3.194905	4.63338	0.0293825	9.56909e-4	0.129773	0.010724
chr5	134161058	134161130	6843734	0	-	0.5	(0.49,0.53]	chr5	523632	2	CDS	CDS:UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	2.87726	3.19477	3.51228	6.30634e-5	7.99738e-6	0.00135503	2.28719e-4
chr3	43718648	43718747	3441064	0	+	0.343434	(0.33,0.36]	chr3	299384	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	122	2	2.94349	3.19466	3.44583	8.94548e-7	4.54896e-7	3.63955e-5	2.27746e-5
chr2	61417119	61417197	2689773	0	-	0.564103	(0.53,0.59]	chr2	240301	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	USP34:AC016894.1	ENSG00000115464.15:ENSG00000234624.2	ENST00000398571.7:ENST00000453133.1:ENST00000444364.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	3	39	2	2.99511	3.194635	3.39416	0.00126006	9.46531e-4	0.013837	0.010681
chr1	220094131	220094216	719989	0	+	0.705882	(0.59,1]	chr1	72474	1	UTR5	UTR5:EXON_MRNA	IARS2	ENSG00000067704.10	ENST00000366922.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.24397	3.1944	4.14483	0.0206682	0.0183207	0.0997234	0.0945306
chr12	56136743	56136818	12898341	0	+	0.613333	(0.59,1]	chr12	1004264	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.24397	3.1944	4.14483	0.0206682	0.0183207	0.0997234	0.0945306
chrX	65731910	65731984	18716279	0	+	0.527027	(0.49,0.53]	chrX	1596847	2	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	2.87641	3.194345	3.51228	1.54355e-4	7.99738e-6	0.00280158	2.28719e-4
chr1	634827	634927	823379	0	-	0.37	(0.36,0.39]	chr1	81486	18	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	33	2	2.42114	3.194155	3.96717	0.00564641	6.17763e-5	0.0422191	0.00122919
chr7	73441200	73441300	8853471	0	-	0.35	(0.33,0.36]	chr7	675865	9	UTR3	UTR3:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	2.71097	3.1941300000000004	3.67729	6.6741e-4	1.89665e-5	0.00867533	4.64808e-4
chr1	161519136	161519235	500541	0	+	0.515152	(0.49,0.53]	chr1	54251	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000271450.12:ENST00000467525.5:ENST00000537821.2:ENST00000459885.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	3	34	2	2.8681	3.193955	3.51981	0.00175299	6.88328e-4	0.0171299	0.00876781
chr5	115616008	115616108	6777006	0	-	0.38	(0.36,0.39]	chr5	519913	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	58	2	3.09502	3.19391	3.2928	2.65442e-4	1.38423e-5	0.004287	3.5918e-4
chrX	123638042	123638123	19198542	0	-	0.37037	(0.36,0.39]	chrX	1632568	1	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.66836	3.19381	4.71926	0.0474647	5.29682e-4	0.17993	0.006804
chr4	57017141	57017241	4851149	0	+	0.4	(0.39,0.42]	chr4	399819	2	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	2.48908	3.1937800000000003	3.89848	0.0101318	9.30194e-5	0.0626311	0.00169783
chr5	44811081	44811154	5961534	0	+	0.39726	(0.39,0.42]	chr5	467199	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.48908	3.1937800000000003	3.89848	0.0101318	9.30194e-5	0.0626311	0.00169783
chr7	5593127	5593219	8111990	0	+	0.706522	(0.59,1]	chr7	620013	2	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.99438	3.19365	3.39292	0.00776449	0.00192565	0.050813	0.0191769
chr18	2578054	2578141	16726062	0	+	0.413793	(0.39,0.42]	chr18	1379583	2	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000576274.2:ENST00000574567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.49701	3.1934649999999998	3.88992	0.0339607	4.22388e-6	0.141431	1.34652e-4
chr17	35724086	35724183	16207503	0	+	0.340206	(0.33,0.36]	chr17	1309154	5	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000610402.5:ENST00000612116.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.91384	3.1934199999999997	3.473	0.0021527	8.77304e-4	0.0208395	0.0101202
chrX	19355426	19355504	18604908	0	+	0.525641	(0.49,0.53]	chrX	1589038	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000479146.1:ENST00000481733.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.49797	3.1934199999999997	3.88887	0.00843736	9.98984e-5	0.0546021	0.00180257
chr15	78498921	78499019	15040140	0	+	0.295918	(0.29,0.33]	chr15	1183144	9	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	1.71387	3.193405	4.67294	0.0355849	4.55565e-7	0.147262	2.04528e-5
chr10	84144290	84144374	11164536	0	+	0.238095	[0,0.29]	chr10	848135	2	SS5_PROX	SS5_PROX:INTRON	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	2.82387	3.1932099999999997	3.56255	2.4558e-4	1.49123e-5	0.00371192	4.19498e-4
chr21	8436944	8437043	18041913	0	+	0.474747	(0.455,0.49]	chr21	1530900	39	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	1101	8978	2	2.90104	3.1930750000000003	3.48511	2.17811e-9	1.1775e-12	2.07567e-7	2.85654e-10
chr11	47418834	47418934	12386547	0	-	0.58	(0.53,0.59]	chr11	956836	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.22207	3.1929499999999997	4.16383	0.00910511	0.00659193	0.0576716	0.0454205
chr1	32171192	32171291	127020	0	+	0.282828	[0,0.29]	chr1	15636	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	10	58	2	2.61699	3.19294	3.76889	1.95674e-4	5.42227e-7	0.00310715	2.64804e-5
chr11	33858867	33858965	12344945	0	-	0.428571	(0.42,0.455]	chr11	954142	4	UTR3	UTR3:EXON_MRNA	LMO2	ENSG00000135363.12	ENST00000257818.3:ENST00000395833.7:ENST00000411482.1:ENST00000464025.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.32629	3.192915	4.05954	0.0153564	0.00617886	0.0832114	0.0439741
chr17	2670162	2670246	16086608	0	+	0.428571	(0.42,0.455]	chr17	1293725	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000676201.1:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1:ENST00000609078.1:ENST00000397193.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.32629	3.192915	4.05954	0.0153564	0.00617886	0.0832114	0.0439741
chr3	100365563	100365663	4325505	0	-	0.44	(0.42,0.455]	chr3	360553	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.32629	3.192915	4.05954	0.0153564	0.00617886	0.0832114	0.0439741
chr4	145123538	145123600	5146164	0	+	0.435484	(0.42,0.455]	chr4	416377	2	CDS	CDS:UTR3:EXON_MRNA	ABCE1	ENSG00000164163.11	ENST00000296577.9:ENST00000507193.5:ENST00000515678.5:ENST00000510321.1:ENST00000504683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.32629	3.192915	4.05954	0.0153564	0.00617886	0.0832114	0.0439741
chr6	87634902	87634961	7270760	0	+	0.423729	(0.42,0.455]	chr6	560507	2	CDS	CDS:EXON_MRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.32629	3.192915	4.05954	0.0153564	0.00617886	0.0832114	0.0439741
chr11	46382586	46382649	11935306	0	+	0.571429	(0.53,0.59]	chr11	912490	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDK	ENSG00000110492.16	ENST00000405308.6:ENST00000490240.5:ENST00000359803.7:ENST00000533952.5:ENST00000617138.4:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000481047.1:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	297	2	2.79212	3.19286	3.5936	9.36548e-7	8.42158e-9	3.78966e-5	7.31714e-7
chr1	110018372	110018467	401883	0	+	0.431579	(0.42,0.455]	chr1	39315	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1:ENST00000469401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	46	2	2.59462	3.192825	3.79103	0.0062772	8.61353e-6	0.0445415	2.43348e-4
chrX	81277076	81277169	18749940	0	+	0.483871	(0.455,0.49]	chrX	1600047	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.56938	3.19281	3.81624	0.00635313	1.48205e-4	0.0449666	0.00269793
chr11	34450987	34451042	11906122	0	+	0.454545	(0.42,0.455]	chr11	909775	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chr14	73275302	73275400	14698734	0	-	0.438776	(0.42,0.455]	chr14	1150978	3	UTR3	UTR3:EXON_MRNA	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chr5	134800648	134800748	6231472	0	+	0.45	(0.42,0.455]	chr5	485407	41	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000452510.7:ENST00000507392.5:ENST00000354283.8:ENST00000503946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chr7	34930872	34930972	8766512	0	-	0.45	(0.42,0.455]	chr7	668474	21	UTR3	UTR3:EXON_MRNA	DPY19L1	ENSG00000173852.15	ENST00000310974.8:ENST00000638088.2	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chr7	77778747	77778827	8351185	0	+	0.4375	(0.42,0.455]	chr7	637116	1	CDS	CDS:UTR3:EXON_MRNA	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5:ENST00000441514.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chr7	135638556	135638619	8553240	0	+	0.428571	(0.42,0.455]	chr7	652887	1	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chrX	119615814	119615906	19191975	0	-	0.434783	(0.42,0.455]	chrX	1631517	2	UTR3	UTR3:EXON_MRNA	SEPTIN6	ENSG00000125354.24	ENST00000360156.11	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3259	3.19272	4.05954	0.0484606	0.00617886	0.175495	0.0439741
chr11	118396637	118396736	12157856	0	+	0.333333	(0.33,0.36]	chr11	936937	3	UTR3	UTR3:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.69981	3.192705	4.6856	0.0370662	3.92435e-4	0.145667	0.00583618
chr19	36145775	36145874	17308793	0	+	0.50505	(0.49,0.53]	chr19	1432239	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000591041.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000592354.5:ENST00000586963.1:ENST00000589162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	4	50	2	2.49797	3.19264	3.88731	0.00843736	4.40111e-6	0.0546021	1.3969e-4
chr15	57232360	57232430	14949578	0	+	0.5	(0.49,0.53]	chr15	1174874	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.56183	3.192565	3.8233	0.0261296	1.44192e-4	0.118976	0.00242438
chr3	185491636	185491693	4625818	0	-	0.526316	(0.49,0.53]	chr3	382041	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	29	2	2.56183	3.192565	3.8233	0.0261296	1.44192e-4	0.118976	0.00242438
chr1	77682584	77682675	1111824	0	-	0.615385	(0.59,1]	chr1	111683	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5:ENST00000469944.1:ENST00000458763.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.39747	3.1924900000000003	3.98751	0.0430221	0.0301044	0.161091	0.129773
chr19	1059022	1059085	17191097	0	+	0.619048	(0.59,1]	chr19	1411554	1	CDS	CDS:UTR3:EXON_MRNA	ABCA7	ENSG00000064687.13	ENST00000433129.6:ENST00000263094.11:ENST00000435683.7:ENST00000673773.1:ENST00000525073.6:ENST00000532194.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.39747	3.1924900000000003	3.98751	0.0430221	0.0301044	0.161091	0.129773
chr2	27242619	27242707	1691786	0	+	0.602273	(0.59,1]	chr2	165805	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.39747	3.1924900000000003	3.98751	0.0430221	0.0301044	0.161091	0.129773
chrX	154488080	154488175	19278514	0	-	0.652632	(0.59,1]	chrX	1638472	6	CDS	CDS:EXON_MRNA	SLC10A3	ENSG00000126903.16	ENST00000263512.5:ENST00000369649.8:ENST00000651600.1:ENST00000393586.1:ENST00000393587.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.39747	3.1924900000000003	3.98751	0.0430221	0.0301044	0.161091	0.129773
chr11	308972	309043	11756403	0	+	0.619718	(0.59,1]	chr11	897736	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM2:RP11-326C3.17	ENSG00000185201.17:ENSG00000288681.1	ENST00000533141.1:ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000680619.1:ENST00000602569.2:ENST00000527146.1:ENST00000399815.2:ENST00000680099.1:ENST00000679636.1:ENST00000679383.1:ENST00000680585.1:ENST00000681211.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.76006	3.1924400000000004	3.62482	0.00330486	7.40647e-4	0.027613	0.00925967
chr6	135619164	135619255	7979260	0	-	0.472527	(0.455,0.49]	chr6	610056	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP73	ENSG00000226540.2	ENST00000423411.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	32	2	2.92099	3.1924400000000004	3.46389	0.00138399	9.14164e-4	0.0143168	0.0110519
chr10	87505194	87505283	11173430	0	+	0.674157	(0.59,1]	chr10	849103	3	CDS	CDS:EXON_MRNA	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.19905	3.1923700000000004	4.18569	0.0105866	5.09234e-5	0.0644466	0.00114531
chr20	50081703	50081799	18004124	0	-	0.479167	(0.455,0.49]	chr20	1525944	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.74211	3.19229	3.64247	0.00330545	2.341e-5	0.028478	5.54056e-4
chr1	236544832	236544915	769741	0	+	0.409639	(0.39,0.42]	chr1	77611	2	CDS	CDS:EXON_MRNA	LGALS8	ENSG00000116977.19	ENST00000527974.5:ENST00000352231.6:ENST00000526589.5:ENST00000450372.6:ENST00000416919.6:ENST00000341872.10:ENST00000366584.9:ENST00000323938.10:ENST00000526634.5:ENST00000525042.1:ENST00000528259.5:ENST00000532640.1:ENST00000489586.6:ENST00000525789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	3.05461	3.192205	3.3298	0.00165391	8.55091e-4	0.0163614	0.0105173
chr11	61329436	61329510	12404216	0	-	0.432432	(0.42,0.455]	chr11	960274	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5:ENST00000538129.1:ENST00000542337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	57	2	2.2877	3.192155	4.09661	7.54128e-4	2.79795e-5	0.00901774	7.07527e-4
chr12	55994397	55994497	12897167	0	+	0.54	(0.53,0.59]	chr12	1003857	23	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	46	2	2.51602	3.192055	3.86809	0.00264912	1.18973e-4	0.024013	0.00207755
chr15	59768450	59768549	14962125	0	+	0.454545	(0.42,0.455]	chr15	1175886	2	EXON_PSEUDO	EXON_PSEUDO	RPS3AP6	ENSG00000234797.5	ENST00000484430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	48	2	2.4279	3.19164	3.95538	9.43793e-4	6.68846e-5	0.0106637	0.00142352
chr17	40404212	40404273	16538911	0	-	0.409836	(0.39,0.42]	chr17	1354627	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	3.18738	3.19163	3.19588	0.00321212	7.15306e-5	0.0280721	0.00137393
chr15	42239667	42239731	15239133	0	-	0.421875	(0.42,0.455]	chr15	1200235	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5:ENST00000561578.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.47379	3.1915	3.90921	0.0121657	0.00996858	0.0701019	0.0621728
chr1	47432325	47432421	986635	0	-	0.489583	(0.455,0.49]	chr1	104212	3	EXON_LNCRNA	EXON_LNCRNA	FOXD2-AS1	ENSG00000237424.1	ENST00000445551.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	2.56938	3.191065	3.81275	0.0138827	0.00635313	0.0760883	0.0449666
chr16	23587277	23587319	15895401	0	-	0.52381	(0.49,0.53]	chr16	1272298	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5:ENST00000567761.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	3.15207	3.191065	3.23006	0.00347189	0.00253719	0.0286293	0.0233955
chr9	89315233	89315297	10349727	0	+	0.5	(0.49,0.53]	chr9	778998	2	CDS	CDS:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	3.15207	3.191065	3.23006	0.00347189	0.00253719	0.0286293	0.0233955
chr1	1049565	1049641	2375	0	+	0.697368	(0.59,1]	chr1	547	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.5215	3.1910499999999997	3.8606	0.032241	2.2997e-4	0.135671	0.00352524
chr1	148749789	148749886	458196	0	+	0.350515	(0.33,0.36]	chr1	45663	4	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	14	98	2	2.55374	3.19094	3.82814	9.428e-5	2.92628e-8	0.00187996	1.95617e-6
chr15	77484725	77484822	15037367	0	+	0.443299	(0.42,0.455]	chr15	1182624	19	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	3.16223	3.190905	3.21958	4.45084e-4	5.79033e-5	0.00633715	0.00116556
chr6	17616610	17616695	7618886	0	-	0.435294	(0.42,0.455]	chr6	580516	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	3.16223	3.190905	3.21958	4.45084e-4	5.79033e-5	0.00633715	0.00116556
chr19	58394681	58394750	17412771	0	+	0.565217	(0.53,0.59]	chr19	1451040	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	196	2	2.41778	3.1908700000000003	3.96396	1.17473e-4	1.77421e-9	0.00223408	1.74364e-7
chr5	10417336	10417404	5875364	0	+	0.514706	(0.49,0.53]	chr5	462030	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5:ENST00000505253.1:ENST00000514312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	92	2	2.4677	3.19078	3.91386	2.59024e-4	3.70757e-7	0.00421594	1.71165e-5
chr3	38486403	38486502	3421776	0	+	0.484848	(0.455,0.49]	chr3	297512	32	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.50904	3.190685	3.87233	0.0310515	1.08465e-4	0.131262	0.00193256
chrX	40605655	40605755	18667637	0	+	0.37	(0.36,0.39]	chrX	1591887	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ATP6AP2	ENSG00000182220.15	ENST00000636409.1:ENST00000637327.1:ENST00000635774.1:ENST00000637526.1:ENST00000636639.1:ENST00000636787.1:ENST00000638153.1:ENST00000378438.9:ENST00000636970.1:ENST00000635734.1:ENST00000636580.2:ENST00000636574.1:ENST00000637482.1:ENST00000636251.1:ENST00000636196.1:ENST00000423649.2:ENST00000636287.1:ENST00000447485.6:ENST00000637955.1:ENST00000635829.1:ENST00000637614.1:ENST00000637165.1:ENST00000636223.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.63115	3.19061	3.75007	0.0245975	2.12157e-4	0.114841	0.00329275
chr1	196740618	196740705	641496	0	+	0.425287	(0.42,0.455]	chr1	64516	1	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000466229.5:ENST00000470918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.7523	3.19043	3.62856	0.0153283	4.02604e-4	0.0828908	0.00549837
chr16	28724392	28724463	15619219	0	+	0.43662	(0.42,0.455]	chr16	1238293	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	RP11-231C14.10:EIF3C:MIR6862-2	ENSG00000288630.1:ENSG00000184110.15:ENSG00000278340.1	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000614755.1	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:primary_miRNA	2	26	2	2.7523	3.19043	3.62856	0.0153283	4.02604e-4	0.0828908	0.00549837
chr2	135851482	135851563	2898020	0	-	0.444444	(0.42,0.455]	chr2	258506	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM6	ENSG00000076003.5	ENST00000264156.3:ENST00000492091.1:ENST00000483902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.7523	3.19043	3.62856	0.0153283	4.02604e-4	0.0828908	0.00549837
chr12	112406746	112406818	13545904	0	-	0.583333	(0.53,0.59]	chr12	1066139	1	CDS	CDS:EXON_MRNA	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000424576.6:ENST00000546368.2:ENST00000550238.1:ENST00000551041.6:ENST00000552455.5:ENST00000550566.6:ENST00000549847.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	146	2	2.82257	3.19034	3.55811	2.50989e-5	1.62314e-7	5.82876e-4	9.58793e-6
chr7	121295950	121296049	8496829	0	+	0.262626	[0,0.29]	chr7	648451	4	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.50979	3.19029	3.87079	0.00608277	5.07829e-7	0.0438976	2.24269e-5
chr14	102727000	102727099	14500037	0	+	0.383838	(0.36,0.39]	chr14	1133640	6	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.63521	3.190225	3.74524	0.00633242	1.17259e-5	0.0446708	3.12994e-4
chr8	70583649	70583721	9881374	0	-	0.402778	(0.39,0.42]	chr8	746922	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	3.14527	3.1902150000000002	3.23516	5.33048e-4	1.41395e-5	0.00742114	3.65815e-4
chr19	36237122	36237219	17309077	0	+	0.474227	(0.455,0.49]	chr19	1432279	7	CDS	CDS:EXON_MRNA	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000443387.3	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.27492	3.1901349999999997	4.10535	0.0193827	0.0064531	0.0943643	0.0450905
chrX	53588381	53588457	19077770	0	-	0.460526	(0.455,0.49]	chrX	1622873	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.27492	3.1901349999999997	4.10535	0.0193827	0.0064531	0.0943643	0.0450905
chr10	97459658	97459741	11646019	0	-	0.506024	(0.49,0.53]	chr10	887341	1	CDS	CDS:UTR3:EXON_MRNA	MMS19	ENSG00000155229.21	ENST00000370782.6:ENST00000438925.7:ENST00000415383.5:ENST00000434538.5:ENST00000495415.5:ENST00000444411.5:ENST00000355839.10:ENST00000327238.14:ENST00000485400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr11	74836136	74836235	12020706	0	+	0.494949	(0.49,0.53]	chr11	926730	7	CDS	CDS:EXON_MRNA	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr12	49992065	49992133	13327199	0	-	0.514706	(0.49,0.53]	chr12	1046318	2	CDS	CDS:EXON_MRNA	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr14	22947606	22947706	14528017	0	-	0.51	(0.49,0.53]	chr14	1138205	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	HAUS4:RP11-298I3.5	ENSG00000092036.19:ENSG00000259132.1	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000554446.5:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555074.1:ENST00000555986.5:ENST00000556421.5:ENST00000553859.5:ENST00000554063.1:ENST00000555040.5:ENST00000556915.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr15	43534393	43534486	15247776	0	-	0.516129	(0.49,0.53]	chr15	1201486	11	UTR3	UTR3:EXON_MRNA	PPIP5K1	ENSG00000168781.22	ENST00000420765.5:ENST00000334933.8:ENST00000360135.8:ENST00000360301.8:ENST00000396923.7:ENST00000381885.5:ENST00000348806.10:ENST00000381879.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr22	17628692	17628749	18424139	0	-	0.508772	(0.49,0.53]	chr22	1569512	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000478963.5:ENST00000460085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr3	196238687	196238787	4663898	0	-	0.53	(0.49,0.53]	chr3	385718	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr7	30923826	30923909	8206211	0	+	0.518072	(0.49,0.53]	chr7	626041	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	AQP1	ENSG00000240583.14	ENST00000311813.11:ENST00000652696.1:ENST00000441328.7:ENST00000652692.1:ENST00000409899.5:ENST00000409611.1:ENST00000651610.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr9	128541101	128541170	10479838	0	+	0.507246	(0.49,0.53]	chr9	790304	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000309971.9:ENST00000684139.1:ENST00000683288.1:ENST00000684210.1:ENST00000684463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chrX	70148760	70148840	18726749	0	+	0.5125	(0.49,0.53]	chrX	1597519	1	CDS	CDS:EXON_MRNA	IGBP1	ENSG00000089289.16	ENST00000356413.5:ENST00000342206.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.64528	3.19011	3.73494	0.0202736	0.0189345	0.0984041	0.0934721
chr5	140529036	140529131	6255126	0	+	0.568421	(0.53,0.59]	chr5	487634	10	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.38191	3.1900500000000003	3.99819	0.0111308	0.00477439	0.0665375	0.0368489
chr16	34268552	34268649	15924774	0	-	0.402062	(0.39,0.42]	chr16	1276975	27	EXON_PSEUDO	EXON_PSEUDO	BCLAF1P2	ENSG00000279800.2	ENST00000624956.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.88836	3.189905	3.49145	0.0350273	0.0102432	0.141505	0.062872
chr16	90192729	90192828	15814413	0	+	0.393939	(0.39,0.42]	chr16	1259716	51	INTRON	INTRON	LINC02193	ENSG00000260923.7	ENST00000568418.1:ENST00000656587.1:ENST00000668099.1:ENST00000569162.2:ENST00000665776.1:ENST00000669853.1:ENST00000668039.1:ENST00000658135.1:ENST00000663101.1:ENST00000663757.1:ENST00000568947.2	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.88836	3.189905	3.49145	0.0350273	0.0102432	0.141505	0.062872
chr20	56406166	56406264	17834539	0	+	0.408163	(0.39,0.42]	chr20	1507915	26	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.88836	3.189905	3.49145	0.0350273	0.0102432	0.141505	0.062872
chr6	38677098	38677196	7689641	0	-	0.387755	(0.36,0.39]	chr6	589572	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	39	280	2	3.01851	3.189825	3.36114	3.7273e-8	3.5497e-9	2.40057e-6	3.43347e-7
chr3	96617273	96617369	4316740	0	-	0.5	(0.49,0.53]	chr3	360010	1	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	176	1636	2	2.80304	3.189805	3.57657	1.7749e-8	5.82845e-12	1.38487e-6	1.07608e-9
chr3	33866525	33866624	3399903	0	+	0.414141	(0.39,0.42]	chr3	295769	1	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	113	2	3.00212	3.1897450000000003	3.37737	3.54013e-6	6.07369e-7	1.27621e-4	2.61508e-5
chr1	226383109	226383183	1533254	0	-	0.405405	(0.39,0.42]	chr1	153484	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	3.0565	3.18964	3.32278	1.93131e-4	2.95704e-5	0.0033147	6.70125e-4
chr1	11023723	11023822	42058	0	+	0.454545	(0.42,0.455]	chr1	5026	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	66	2	2.49412	3.189635	3.88515	3.62613e-4	4.4354e-6	0.00507539	1.54303e-4
chr14	102027173	102027230	14495632	0	+	0.45614	(0.455,0.49]	chr14	1133165	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000647119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	1.96875	3.18958	4.41041	0.0480352	0.00218771	0.180552	0.0202707
chr3	58430846	58430942	4212063	0	-	0.458333	(0.455,0.49]	chr3	355554	3	CDS	CDS:EXON_MRNA	PDHB	ENSG00000168291.13	ENST00000383714.8:ENST00000302746.11:ENST00000469364.5:ENST00000485460.5:ENST00000479945.1:ENST00000474765.1:ENST00000461692.5:ENST00000480626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	1.96875	3.18958	4.41041	0.0480352	0.00218771	0.180552	0.0202707
chr8	67059210	67059296	9867839	0	-	0.465116	(0.455,0.49]	chr8	746128	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPS5	ENSG00000121022.14	ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000518374.5:ENST00000521386.5:ENST00000523890.5:ENST00000518747.1:ENST00000517793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	1.96875	3.18958	4.41041	0.0480352	0.00218771	0.180552	0.0202707
chrX	65731837	65731910	18716278	0	+	0.452055	(0.42,0.455]	chrX	1596847	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	2.42938	3.189335	3.94929	0.0045028	2.78395e-6	0.0349711	9.49154e-5
chr17	82080369	82080442	16710680	0	-	0.657534	(0.59,1]	chr17	1378140	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	65	2	3.17616	3.1892699999999996	3.20238	0.00434232	4.79306e-4	0.0339139	0.00629006
chr21	31688306	31688385	18211362	0	-	0.506329	(0.49,0.53]	chr21	1545292	1	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.09506	3.18919	4.28332	0.00820526	0.00338762	0.05339	0.0288632
chr10	73053430	73053510	11568702	0	-	0.45	(0.42,0.455]	chr10	880493	2	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	91	2	2.91373	3.1889700000000003	3.46421	0.00892357	1.31529e-7	0.0567495	7.08371e-6
chr17	76564475	76564572	16359194	0	+	0.494845	(0.49,0.53]	chr17	1328581	15	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	15	136	2	2.82476	3.188965	3.55317	5.63558e-6	3.67891e-7	1.71134e-4	1.91579e-5
chr3	41233782	41233867	3432560	0	+	0.517647	(0.49,0.53]	chr3	298554	4	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1:ENST00000644395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	65	2	3.02891	3.1887800000000004	3.34865	8.23332e-4	6.25986e-6	0.0102121	1.87037e-4
chr10	5768212	5768298	11352479	0	-	0.476744	(0.455,0.49]	chr10	865744	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	2.83283	3.18872	3.54461	6.06795e-4	4.40117e-5	0.00817698	9.24938e-4
chr12	45850625	45850724	12851683	0	+	0.434343	(0.42,0.455]	chr12	998018	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.91373	3.18861	3.46349	0.00892357	9.0025e-4	0.0567495	0.0102618
chr1	12568339	12568424	862089	0	-	0.494118	(0.49,0.53]	chr1	87501	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.46958	3.188535	3.90749	0.00344146	6.83837e-8	0.0292838	4.03413e-6
chr1	12922553	12922606	50995	0	+	0.45283	(0.42,0.455]	chr1	6732	1	EXON_SMALL	EXON_SMALL	RNU6-1072P	ENSG00000207434.1	ENST00000384703.1	snRNA	snRNA	snRNA	snRNA	7	61	2	2.69502	3.18849	3.68196	2.01357e-4	1.87505e-5	0.00317801	5.08634e-4
chr4	6641821	6641913	4704240	0	+	0.391304	(0.39,0.42]	chr4	390529	2	UTR3	UTR3:EXON_MRNA	MRFAP1	ENSG00000179010.15	ENST00000617365.4:ENST00000320912.8:ENST00000382581.5:ENST00000512914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	72	2	2.59477	3.188465	3.78216	1.97342e-4	1.10025e-6	0.00313008	4.77781e-5
chr8	60224536	60224585	9845144	0	-	0.367347	(0.36,0.39]	chr8	744882	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5:ENST00000528666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	2.63115	3.188195	3.74524	0.0245975	1.17259e-5	0.114841	3.12994e-4
chr11	3695527	3695606	12237920	0	-	0.518987	(0.49,0.53]	chr11	945528	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000524563.1:ENST00000530345.1:ENST00000488828.1:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	1.69633	3.1880249999999997	4.67972	0.0531914	6.94757e-4	0.184818	0.00876781
chr5	95755674	95755761	6108097	0	+	0.425287	(0.42,0.455]	chr5	478227	4	CDS	CDS:UTR3:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	122	2	2.20868	3.1880100000000002	4.16734	0.0019911	1.38319e-9	0.019572	1.40038e-7
chr4	99072224	99072320	5548220	0	-	0.364583	(0.36,0.39]	chr4	443145	14	UTR3	UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	2.88918	3.187935	3.48669	0.00212816	6.40815e-5	0.0206577	0.00125657
chr10	27136275	27136330	11423548	0	-	0.454545	(0.42,0.455]	chr10	870972	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000463270.1:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	2.34191	3.18787	4.03383	0.0159091	4.24324e-5	0.0854674	8.98949e-4
chrX	3822433	3822527	18931995	0	-	0.478723	(0.455,0.49]	chrX	1613436	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000425492.5:ENST00000662024.1:ENST00000490920.2:ENST00000475317.5:ENST00000483854.6:ENST00000653447.1:ENST00000669937.1:ENST00000469903.5:ENST00000461011.6:ENST00000657193.1:ENST00000471090.5:ENST00000671495.1:ENST00000486571.1	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	2.35515	3.1877750000000002	4.0204	0.0140117	0.00736097	0.0767536	0.0490627
chr16	23572489	23572589	15594623	0	+	0.61	(0.59,1]	chr16	1236627	20	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.25872	3.1877199999999997	4.11672	0.0222273	0.0193473	0.105595	0.0969537
chr17	45951928	45952028	16241761	0	+	0.45	(0.42,0.455]	chr17	1315467	200	INTRON	INTRON	MAPT	ENSG00000186868.17	ENST00000680674.1:ENST00000535772.6:ENST00000351559.10:ENST00000262410.10:ENST00000344290.10:ENST00000571311.5:ENST00000570299.5:ENST00000680542.1:ENST00000334239.12:ENST00000446361.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.91373	3.18771	3.46169	0.03884	0.00892357	0.149227	0.0567495
chr5	126914741	126914823	6811227	0	-	0.451219	(0.42,0.455]	chr5	521360	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000504239.1:ENST00000515241.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.91373	3.18771	3.46169	0.03884	0.00892357	0.149227	0.0567495
chr12	123202899	123202991	13594342	0	-	0.423913	(0.42,0.455]	chr12	1070850	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539024.5:ENST00000539336.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	2.75179	3.1874700000000002	3.62315	8.66526e-4	4.234e-4	0.0100799	0.00613535
chr7	138567567	138567654	8563368	0	+	0.448276	(0.42,0.455]	chr7	653279	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.8096	3.18737	3.56514	0.00253237	3.86623e-5	0.0233955	8.37229e-4
chr14	102050434	102050463	14495927	0	+	0.448276	(0.42,0.455]	chr14	1133287	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	3.06293	3.18727	3.31161	0.00492128	0.00186138	0.0366648	0.018635
chr5	126777508	126777608	6202244	0	+	0.78	(0.59,1]	chr5	483162	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	32	2	2.11074	3.18714	4.26354	0.0305	0.0134233	0.130204	0.0743429
chr12	6592392	6592479	13187318	0	-	0.528736	(0.49,0.53]	chr12	1032346	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000537634.2:ENST00000545083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	3.11892	3.18703	3.25514	0.00398244	0.00227467	0.0322851	0.0209546
chr4	52713669	52713769	4829921	0	+	0.46	(0.455,0.49]	chr4	398211	4	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR:LINC01618	ENSG00000226950.8:ENSG00000250302.3	ENST00000411630.7:ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2:ENST00000675191.1:ENST00000653147.1:ENST00000623036.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	3.17056	3.18702	3.20348	4.1243e-4	3.27782e-4	0.00604953	0.0046686
chr7	5528532	5528616	8659485	0	-	0.678571	(0.59,1]	chr7	662116	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	670	2	2.8301	3.18702	3.54394	3.71109e-6	4.99169e-8	1.20856e-4	3.40172e-6
chr12	93401371	93401471	13019167	0	+	0.45	(0.42,0.455]	chr12	1013446	21	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	2.7447	3.186925	3.62915	7.96786e-5	7.04911e-7	0.00166095	2.96491e-5
chr1	242975004	242975084	797484	0	+	0.5375	(0.53,0.59]	chr1	79569	1	EXON_PSEUDO	EXON_PSEUDO	RP11-331N16.1	ENSG00000230199.1	ENST00000438481.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	28	2	2.36991	3.18692	4.00393	0.0108084	0.00501452	0.064368	0.0370872
chr14	103521817	103521883	14795345	0	-	0.742424	(0.59,1]	chr14	1159551	1	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000553652.5:ENST00000557569.1:ENST00000554426.5:ENST00000553878.5:ENST00000557287.1:ENST00000555659.5:ENST00000554705.5:ENST00000555770.1:ENST00000557530.1:ENST00000553994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.38614	3.186825	3.98751	0.0301044	0.0128707	0.129773	0.0725185
chr5	135028778	135028878	6846890	0	-	0.66	(0.59,1]	chr5	523929	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PITX1	ENSG00000069011.16	ENST00000265340.12:ENST00000506438.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.38614	3.186825	3.98751	0.0301044	0.0128707	0.129773	0.0725185
chr2	106698003	106698099	2825360	0	-	0.510417	(0.49,0.53]	chr2	252231	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	27	250	2	3.18151	3.186745	3.19198	7.92357e-8	5.90374e-8	5.08454e-6	3.55306e-6
chrX	154535312	154535385	19278729	0	-	0.589041	(0.53,0.59]	chrX	1638568	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000433845.1:ENST00000497281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.89916	3.186675	3.47419	0.00890406	8.75273e-4	0.0565003	0.0106963
chr12	6528250	6528328	12713526	0	+	0.589744	(0.53,0.59]	chr12	986603	2	CDS	CDS:UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.90978	3.186635	3.46349	0.00857883	9.2216e-4	0.0552386	0.0104432
chr17	8205215	8205302	16432120	0	-	0.54023	(0.53,0.59]	chr17	1340331	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5:ENST00000578549.5:ENST00000580998.5:ENST00000578753.1:ENST00000577833.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.90978	3.186635	3.46349	0.00857883	9.2216e-4	0.0552386	0.0104432
chr3	48631223	48631306	4168917	0	-	0.554217	(0.53,0.59]	chr3	349682	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC26A6	ENSG00000225697.13	ENST00000420764.6:ENST00000395550.7:ENST00000337000.12:ENST00000307364.10:ENST00000383733.7:ENST00000489483.5:ENST00000358747.10:ENST00000480524.5:ENST00000455886.6:ENST00000496469.1:ENST00000421649.5:ENST00000444531.5:ENST00000414944.1:ENST00000485361.1:ENST00000494717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.90978	3.186635	3.46349	0.00857883	9.2216e-4	0.0552386	0.0104432
chr5	41920644	41920744	5952063	0	+	0.39	(0.36,0.39]	chr5	466512	20	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.78659	3.18648	3.58637	0.0132982	5.84377e-4	0.0740932	0.00793559
chr20	53582044	53582141	18015964	0	-	0.525773	(0.49,0.53]	chr20	1526897	7	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.13501	3.1863	4.23759	0.0287874	0.00436474	0.128869	0.0335517
chr1	35737338	35737421	938957	0	-	0.457831	(0.455,0.49]	chr1	98758	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSPN	ENSG00000092853.14	ENST00000251195.9:ENST00000318121.8:ENST00000466308.1:ENST00000373220.7:ENST00000520551.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr1	45566568	45566628	174770	0	+	0.483333	(0.455,0.49]	chr1	22647	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr1	168231833	168231919	526381	0	+	0.488372	(0.455,0.49]	chr1	56510	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D2	ENSG00000213064.10	ENST00000471981.1:ENST00000367829.5:ENST00000271375.7:ENST00000630869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr1	169470111	169470186	1358146	0	-	0.48	(0.455,0.49]	chr1	138664	3	CDS	CDS:EXON_MRNA	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr1	220316852	220316945	1513158	0	-	0.483871	(0.455,0.49]	chr1	151414	3	EXON_PSEUDO	EXON_PSEUDO	RP11-302I18.1	ENSG00000232883.1	ENST00000448115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr10	35482703	35482803	11009104	0	+	0.46	(0.455,0.49]	chr10	837213	269	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr2	210437780	210437872	3145374	0	-	0.48913	(0.455,0.49]	chr2	278009	2	CDS	CDS:EXON_MRNA:INTRON	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7:ENST00000233714.8:ENST00000431941.6:ENST00000412863.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr20	34927868	34927962	17767088	0	+	0.457447	(0.455,0.49]	chr20	1500611	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000477932.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr3	45500441	45500510	3447698	0	+	0.478261	(0.455,0.49]	chr3	300291	1	CDS	CDS:UTR3:EXON_MRNA	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.35214	3.1862700000000004	4.0204	0.0455621	0.00736097	0.168044	0.0490627
chr1	205794943	205795018	1462514	0	-	0.573333	(0.53,0.59]	chr1	147541	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4:ENST00000484228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.54844	3.186255	3.82407	0.0179666	0.00663226	0.0918323	0.0461575
chr17	42773823	42773878	16229725	0	+	0.545455	(0.53,0.59]	chr17	1313371	1	CDS_START	CDS_START:CDS:EXON_MRNA	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000591584.1:ENST00000589219.1:ENST00000589577.1:ENST00000590339.5:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.54844	3.186255	3.82407	0.0179666	0.00663226	0.0918323	0.0461575
chr4	2899346	2899435	4687181	0	+	0.561798	(0.53,0.59]	chr4	388822	2	CDS	CDS:EXON_MRNA	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000446856.5:ENST00000513328.6:ENST00000509039.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6:ENST00000506157.1:ENST00000514940.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.54844	3.186255	3.82407	0.0179666	0.00663226	0.0918323	0.0461575
chr16	85672638	85672737	15798079	0	+	0.40404	(0.39,0.42]	chr16	1257094	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1:ENST00000471070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	51	2	2.7778	3.18622	3.59464	2.79638e-4	3.6617e-5	0.0041355	8.82767e-4
chr11	65653888	65653986	12422537	0	-	0.510204	(0.49,0.53]	chr11	964045	4	UTR3	UTR3:EXON_MRNA	RELA	ENSG00000173039.19	ENST00000615805.4:ENST00000612991.4:ENST00000406246.8:ENST00000525693.5:ENST00000308639.13:ENST00000526283.6:ENST00000531484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	1.99044	3.1861800000000002	4.38192	0.0435903	0.00259709	0.170594	0.0229695
chr1	212103038	212103137	701714	0	+	0.343434	(0.33,0.36]	chr1	71180	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	47	2	1.92877	3.18615	4.44353	0.00391839	3.20943e-6	0.0314356	1.17669e-4
chr1	4711999	4712099	16368	0	+	0.78	(0.59,1]	chr1	2638	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AJAP1	ENSG00000196581.11	ENST00000378191.5:ENST00000378190.7:ENST00000466761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	150	3160	2	1.88319	3.185985	4.48878	4.30348e-4	1.1281e-12	0.00620432	2.50364e-10
chr1	184791749	184791847	1408249	0	-	0.377551	(0.36,0.39]	chr1	142402	8	UTR3	UTR3:EXON_MRNA:INTRON	NIBAN1	ENSG00000135842.17	ENST00000417056.5:ENST00000367511.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.84089	3.185915	3.53094	0.0305588	0.0128123	0.130016	0.0719798
chr19	6745828	6745928	17213640	0	+	0.38	(0.36,0.39]	chr19	1415971	4	SS3_PROX	SS3_PROX:INTRON	TRIP10	ENSG00000125733.18	ENST00000600428.5:ENST00000313244.14:ENST00000313285.12:ENST00000600677.5:ENST00000595305.5:ENST00000596758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.84089	3.185915	3.53094	0.0305588	0.0128123	0.130016	0.0719798
chr2	239914689	239914789	3244895	0	-	0.37	(0.36,0.39]	chr2	285963	13	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.84089	3.185915	3.53094	0.0305588	0.0128123	0.130016	0.0719798
chr4	87138468	87138567	4941155	0	+	0.383838	(0.36,0.39]	chr4	405799	29	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.84089	3.185915	3.53094	0.0305588	0.0128123	0.130016	0.0719798
chr4	26433167	26433265	4766702	0	+	0.377551	(0.36,0.39]	chr4	394281	23	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.63825	3.185855	4.73346	0.0311278	3.2963e-4	0.130473	0.00504024
chr18	3253969	3254050	16729718	0	+	0.407407	(0.39,0.42]	chr18	1380094	2	CDS	CDS:EXON_MRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000578562.6:ENST00000536605.1:ENST00000580887.5	protein_coding	protein_coding	protein_coding	protein_coding	14	114	2	3.0387	3.185665	3.33263	2.46945e-6	1.46312e-6	9.43135e-5	5.51606e-5
chr12	115960766	115960866	13554949	0	-	0.4	(0.39,0.42]	chr12	1066994	23	UTR3	UTR3:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648762.1:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000649937.1:ENST00000548784.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.85416	3.18526	3.51636	0.00225069	6.99837e-4	0.021386	0.00846751
chr22	31956792	31956882	18351654	0	+	0.511111	(0.49,0.53]	chr22	1560136	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	120	2	2.98555	3.1852099999999997	3.38487	3.00784e-5	2.7018e-7	7.44291e-4	1.30646e-5
chr1	7843239	7843336	30396	0	+	0.412371	(0.39,0.42]	chr1	3564	6	UTR3	UTR3:EXON_MRNA	PER3	ENSG00000049246.15	ENST00000377532.8:ENST00000613533.4:ENST00000614998.4:ENST00000361923.2	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.34349	3.18518	4.02687	0.0169272	4.35816e-5	0.0890655	0.00091744700000000005
chr3	5178723	5178783	3278245	0	+	0.4	(0.39,0.42]	chr3	288771	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.34349	3.18518	4.02687	0.0169272	4.35816e-5	0.0890655	0.00091744700000000005
chr11	6614051	6614149	12249916	0	-	0.469388	(0.455,0.49]	chr11	946834	14	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	14	115	2	2.7212	3.18514	3.64908	1.23632e-5	5.68197e-7	3.28684e-4	2.74237e-5
chr5	32126111	32126211	6517513	0	-	0.4	(0.39,0.42]	chr5	504807	15	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.95786	3.18513	3.4124	0.00138212	9.95835e-5	0.0149186	0.00180006
chr11	5301479	5301571	12241101	0	-	0.456522	(0.455,0.49]	chr11	946134	5	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.63872	3.18507	3.73142	0.00510378	2.35261e-4	0.0390492	0.00356397
chr5	140706035	140706128	6255963	0	+	0.473118	(0.455,0.49]	chr5	487973	4	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.63872	3.18507	3.73142	0.00510378	2.35261e-4	0.0390492	0.00356397
chr17	61965282	61965375	16628435	0	-	0.451613	(0.42,0.455]	chr17	1366865	4	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.90616	3.185005	3.46385	0.00162359	7.26611e-5	0.0169915	0.00139386
chr17	1675619	1675715	16401544	0	-	0.552083	(0.53,0.59]	chr17	1334917	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	3.12943	3.184765	3.2401	4.81557e-4	5.1985e-5	0.00677016	0.00106081
chr17	75338986	75339066	16354235	0	+	0.475	(0.455,0.49]	chr17	1327185	3	EXON_PSEUDO	EXON_PSEUDO	AC011933.2	ENSG00000228007.1	ENST00000413334.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	60	2	3.09445	3.18467	3.27489	6.1765e-4	1.06338e-5	0.00822794	2.90771e-4
chr18	26170911	26171004	17046295	0	-	0.387097	(0.36,0.39]	chr18	1401280	3	EXON_PSEUDO	EXON_PSEUDO	DHFRP1	ENSG00000188985.6	ENST00000579682.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	44	2	3.10506	3.1845999999999997	3.26414	7.38785e-4	4.42599e-5	0.00924579	9.29425e-4
chr6	170553142	170553242	8091186	0	-	0.59	(0.53,0.59]	chr6	618052	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	9	99	2	2.45142	3.184565	3.91771	4.64724e-4	4.09029e-7	0.00615823	2.08023e-5
chr1	955922	956013	825632	0	-	0.494505	(0.49,0.53]	chr1	81753	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5:ENST00000487214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	2.68653	3.184495	3.68246	0.00122977	3.06313e-4	0.013593	0.00442973
chr11	32600688	32600760	11898293	0	+	0.361111	(0.36,0.39]	chr11	908927	1	CDS	CDS:UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000524711.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	2.90398	3.184475	3.46497	0.00105709	1.32688e-4	0.0123035	0.00228232
chr1	155738156	155738242	484589	0	+	0.534884	(0.53,0.59]	chr1	51008	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1:ENST00000476444.1:ENST00000491777.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	62	2	3.1234	3.18429	3.24518	0.00390623	1.39722e-5	0.0322851	3.61675e-4
chr12	26976259	26976357	13268775	0	-	0.387755	(0.36,0.39]	chr12	1039836	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000545344.5:ENST00000545303.5:ENST00000537406.1:ENST00000535260.5:ENST00000543882.5:ENST00000541081.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.336	3.1841	4.0322	0.0154226	0.00588589	0.0834369	0.0427941
chr1	54205352	54205410	200355	0	+	0.534483	(0.53,0.59]	chr1	25580	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.56002	3.18404	3.80806	0.00634904	1.65022e-4	0.0446708	0.00269147
chr1	235109340	235109437	1560065	0	-	0.28866000000000003	[0,0.29]	chr1	156012	1	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.82443	3.1840349999999997	3.54364	0.0180803	6.84716e-6	0.0920398	2.02291e-4
chr8	73981621	73981717	9406609	0	+	0.302083	(0.29,0.33]	chr8	718136	1	UTR3	UTR3:EXON_MRNA	TMEM70	ENSG00000175606.11	ENST00000312184.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.92065	3.1838100000000003	3.44697	0.0117842	0.00101442	0.0686664	0.0112862
chrX	134473358	134473411	18863701	0	+	0.320755	(0.29,0.33]	chrX	1607366	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.92065	3.1838100000000003	3.44697	0.0117842	0.00101442	0.0686664	0.0112862
chr1	19161662	19161736	876558	0	-	0.540541	(0.53,0.59]	chr1	90241	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.36244	3.183185	4.00393	0.0131162	0.0108084	0.073569	0.064368
chr12	113389982	113390079	13101754	0	+	0.525773	(0.49,0.53]	chr12	1022448	15	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	10	67	2	1.9597	3.183185	4.40667	0.00237901	3.62526e-6	0.0216895	1.29307e-4
chr14	69885784	69885873	14688047	0	-	0.550562	(0.53,0.59]	chr14	1150336	6	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	22	2	2.36244	3.183185	4.00393	0.0131162	0.0108084	0.073569	0.064368
chr1	114576687	114576758	1238237	0	-	0.380282	(0.36,0.39]	chr1	121087	1	CDS	CDS:EXON_MRNA:INTRON	BCAS2	ENSG00000116752.6	ENST00000369541.4:ENST00000485021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr1	149851213	149851309	464857	0	+	0.677083	(0.59,1]	chr1	46804	1	CDS	CDS:EXON_MRNA	H2AC19	ENSG00000272196.2	ENST00000607355.2	protein_coding	protein_coding	protein_coding	protein_coding	17	310	2	2.96312	3.182945	3.40277	7.95121e-6	2.45274e-6	2.49181e-4	8.5469e-5
chr1	183524811	183524909	597715	0	+	0.377551	(0.36,0.39]	chr1	62030	58	INTRON	INTRON	SMG7	ENSG00000116698.21	ENST00000440812.7:ENST00000367537.7:ENST00000508461.5:ENST00000507691.6:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000507406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr11	47818055	47818124	12389759	0	-	0.362319	(0.36,0.39]	chr11	957517	1	CDS	CDS:UTR3:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr15	90443393	90443478	15100181	0	+	0.376471	(0.36,0.39]	chr15	1188065	1	CDS	CDS:EXON_MRNA:INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr17	63809559	63809659	16318851	0	+	0.39	(0.36,0.39]	chr17	1323883	1	CDS	CDS:UTR3:EXON_MRNA	DDX42	ENSG00000198231.13	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000577940.6:ENST00000457800.3:ENST00000584010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr18	54407038	54407114	17127563	0	-	0.381579	(0.36,0.39]	chr18	1406375	3	EXON_PSEUDO	EXON_PSEUDO	SNRPGP2	ENSG00000264350.1	ENST00000580909.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr20	3146603	3146689	17880238	0	-	0.372093	(0.36,0.39]	chr20	1513081	2	UTR3	UTR3:EXON_MRNA:INTRON	UBOX5:FASTKD5	ENSG00000185019.17:ENSG00000215251.4	ENST00000348031.6:ENST00000217173.7:ENST00000449731.1:ENST00000380266.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr22	35746659	35746758	18494520	0	-	0.373737	(0.36,0.39]	chr22	1577801	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBFOX2	ENSG00000100320.23	ENST00000438146.7:ENST00000405409.6:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000359369.8:ENST00000463509.1:ENST00000416721.6:ENST00000495377.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr3	122317891	122317985	3703121	0	+	0.37234	(0.36,0.39]	chr3	316426	4	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P23	ENSG00000240236.1	ENST00000491091.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr4	16163407	16163472	5328984	0	-	0.384615	(0.36,0.39]	chr4	428785	1	CDS	CDS:UTR3:EXON_MRNA	TAPT1	ENSG00000169762.17	ENST00000405303.7:ENST00000503858.1:ENST00000505603.5:ENST00000513782.1:ENST00000508886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr5	142140562	142140629	6262630	0	+	0.432836	(0.42,0.455]	chr5	488712	1	CDS	CDS:EXON_MRNA	NDFIP1	ENSG00000131507.11	ENST00000253814.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.70611	3.182945	3.65978	0.00397496	2.09396e-5	0.0322851	5.04211e-4
chr9	96016863	96016962	10374390	0	+	0.363636	(0.36,0.39]	chr9	781039	38	UTR3	UTR3:EXON_MRNA:INTRON	ERCC6L2	ENSG00000182150.19	ENST00000682983.1:ENST00000670016.1:ENST00000653738.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chrX	130056523	130056619	18858260	0	+	0.364583	(0.36,0.39]	chrX	1606947	5	UTR3	UTR3:EXON_MRNA	BCORL1	ENSG00000085185.16	ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chrX	136666737	136666836	19249205	0	-	0.383838	(0.36,0.39]	chrX	1635284	13	UTR3	UTR3:EXON_MRNA	ARHGEF6	ENSG00000129675.16	ENST00000370622.5:ENST00000370620.5:ENST00000250617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38564	3.182945	3.98025	0.0476159	0.00881716	0.17993	0.0562439
chr7	150951641	150951738	9128673	0	-	0.597938	(0.59,1]	chr7	697474	3	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2:ENST00000684116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	134	2	1.72824	3.1829400000000003	4.63764	0.0471232	9.28067e-8	0.179872	5.23756e-6
chr2	218277661	218277670	3186673	0	-	0.444444	(0.42,0.455]	chr2	279921	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.94263	3.1828649999999996	3.4231	0.00766873	0.00112541	0.0503696	0.0128481
chr12	64431632	64431727	12921947	0	+	0.421053	(0.42,0.455]	chr12	1007078	2	CDS	CDS:UTR3:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5:ENST00000538086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	3.17433	3.182555	3.19078	0.00310864	3.82052e-4	0.0274272	0.0052929
chr20	45905029	45905118	17987703	0	-	0.651685	(0.59,1]	chr20	1524203	2	CDS	CDS:EXON_MRNA	PLTP	ENSG00000100979.15	ENST00000354050.8:ENST00000372431.8:ENST00000372420.5:ENST00000477313.5:ENST00000420868.2	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	3.1314	3.18244	3.23348	0.00352837	6.69043e-4	0.0298518	0.00820018
chr2	73252861	73252941	1885511	0	+	0.5625	(0.53,0.59]	chr2	178588	1	UTR3	UTR3:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.20093	3.18238	4.16383	0.00659193	0.00507963	0.0454205	0.037544
chr16	61055681	61055775	15969145	0	-	0.43617	(0.42,0.455]	chr16	1281543	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPS27AP16	ENSG00000224631.4	ENST00000591758.1:ENST00000492222.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	24	2	3.17397	3.1823750000000004	3.19078	0.0031821	0.00310864	0.0274272	0.0267094
chr9	124518557	124518656	10850445	0	-	0.434343	(0.42,0.455]	chr9	821976	14	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.17397	3.1823750000000004	3.19078	0.0031821	0.00310864	0.0274272	0.0267094
chr12	24842152	24842224	13255984	0	-	0.472222	(0.455,0.49]	chr12	1038874	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	4	39	2	2.89975	3.18182	3.46389	9.14164e-4	3.94125e-4	0.0110519	0.00541075
chr2	37203451	37203550	1742660	0	+	0.272727	[0,0.29]	chr2	169570	17	UTR3	UTR3:EXON_MRNA:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000406711.5:ENST00000392061.6	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.3458	3.1818150000000003	4.01783	0.0116272	1.67386e-6	0.0685835	6.16207e-5
chr1	201134969	201135068	1446491	0	-	0.636364	(0.59,1]	chr1	145188	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.24689	3.1818049999999998	4.11672	0.0222273	0.00890458	0.105595	0.0565003
chr15	68779596	68779693	15359853	0	-	0.494845	(0.49,0.53]	chr15	1213200	12	UTR3	UTR3:EXON_MRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000486054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	57	2	2.13501	3.1816649999999997	4.22832	0.0287874	3.3186e-7	0.128869	1.5646e-5
chr11	67586477	67586577	11996996	0	+	0.61	(0.59,1]	chr11	923180	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	363	2	2.53124	3.181635	3.83203	1.14428e-4	3.69358e-8	0.00218493	2.38237e-6
chr2	111494976	111495068	2843365	0	-	0.347826	(0.33,0.36]	chr2	253645	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MIR4435-2HG:RP11-803D5.5	ENSG00000172965.17:ENSG00000285016.1	ENST00000645030.2:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000644013.1:ENST00000441075.1:ENST00000673878.1:ENST00000673668.1	lncRNA	lncRNA	lncRNA	lncRNA	5	45	2	2.31697	3.18157	4.04617	0.00966431	1.29334e-6	0.0606263	4.97655e-5
chr17	28574493	28574577	16485927	0	-	0.440476	(0.42,0.455]	chr17	1347750	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	123	2	2.50054	3.181495	3.86245	3.48607e-5	8.83107e-8	7.655e-4	5.61099e-6
chr12	54351184	54351279	12892166	0	+	0.463158	(0.455,0.49]	chr12	1003028	8	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000262061.7	protein_coding	protein_coding	protein_coding	protein_coding	22	175	2	2.83266	3.18148	3.5303	7.00599e-7	4.31258e-7	2.94809e-5	2.17528e-5
chr10	80155752	80155852	11593200	0	-	0.52	(0.49,0.53]	chr10	883015	50	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000463340.1:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	64	2	2.81492	3.1811949999999998	3.54747	6.31846e-4	6.21089e-6	0.00837621	1.85694e-4
chr8	47823857	47823926	9815996	0	-	0.405797	(0.39,0.42]	chr8	742579	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	3.16612	3.181	3.19588	0.00321212	4.03393e-4	0.0280721	0.00550292
chr17	38206731	38206829	16529691	0	-	0.44898	(0.42,0.455]	chr17	1353014	6	INTRON	INTRON	NPEPPSP1	ENSG00000274487.2	ENST00000649858.1:ENST00000620148.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	37	2	2.48259	3.180905	3.87922	0.0031851	1.04705e-4	0.0267166	0.0020295
chr21	25725225	25725287	18190561	0	-	0.354839	(0.33,0.36]	chr21	1544001	1	CDS	CDS:EXON_MRNA	ATP5PF	ENSG00000154723.13	ENST00000400099.5:ENST00000400093.3:ENST00000400087.7:ENST00000400090.7:ENST00000457143.6:ENST00000400094.5:ENST00000284971.8:ENST00000486002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	67	2	2.79427	3.18078	3.56729	1.77242e-4	1.12103e-6	0.0030964400000000002	4.40435e-5
chr20	49634132	49634231	18003166	0	-	0.323232	(0.29,0.33]	chr20	1525863	13	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	1.99395	3.1807	4.36745	0.0131526	4.53307e-6	0.0733631	1.42727e-4
chr1	155293176	155293259	1307564	0	-	0.590361	(0.59,1]	chr1	132203	1	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	3.0542	3.18064	3.30708	0.00663549	0.00252451	0.0456243	0.0226777
chr8	38138971	38139071	9291781	0	+	0.63	(0.59,1]	chr8	710653	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	3.0542	3.18064	3.30708	0.00663549	0.00252451	0.0456243	0.0226777
chr3	156548865	156548934	4538724	0	-	0.405797	(0.39,0.42]	chr3	376090	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1:ENST00000467733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	82	2	2.49701	3.180555	3.8641	0.0339607	2.32111e-8	0.141431	1.60638e-6
chr7	6374665	6374735	8113773	0	+	0.828571	(0.59,1]	chr7	620384	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	38	2	1.79051	3.18044	4.57037	0.0396851	0.0054994	0.161349	0.0402071
chr11	60903458	60903535	12402841	0	-	0.597403	(0.59,1]	chr11	959942	1	CDS	CDS:UTR5:EXON_MRNA	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000541371.5:ENST00000546152.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	1.96265	3.18036	4.39807	0.0238491	1.36238e-5	0.112466	3.54656e-4
chr3	161429408	161429502	4554332	0	-	0.585106	(0.53,0.59]	chr3	377118	4	EXON_PSEUDO	EXON_PSEUDO	RPL23AP42	ENSG00000234851.4	ENST00000471152.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	39	409	2	3.0451	3.18035	3.3156	6.28729e-8	1.15816e-8	3.75475e-6	9.61102e-7
chr5	138506766	138506862	6861943	0	-	0.458333	(0.455,0.49]	chr5	525116	8	UTR3	UTR3:EXON_MRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	3.09445	3.18034	3.26623	6.1765e-4	2.31662e-4	0.00822794	0.00354314
chr15	72585254	72585352	15018751	0	+	0.5	(0.49,0.53]	chr15	1180122	21	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.45798	3.1799600000000003	3.90194	0.00353238	9.11374e-5	0.029076	0.00182992
chr22	30976053	30976151	18344847	0	+	0.285714	[0,0.29]	chr22	1559168	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000563812.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.99144	3.179935	3.36843	0.00112713	3.09234e-4	0.0122637	0.00477565
chr11	64195644	64195698	11979223	0	+	0.555556	(0.53,0.59]	chr11	918699	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000543847.1:ENST00000540501.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	64	2	2.38191	3.17991	3.97791	0.00477439	2.51849e-6	0.0368489	8.73415e-5
chr4	73075442	73075540	5465958	0	-	0.326531	(0.29,0.33]	chr4	437721	22	UTR3	UTR3:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.62211	3.17986	3.73761	0.00310562	2.33029e-4	0.0274272	0.00355688
chr7	26212208	26212307	8183120	0	+	0.212121	[0,0.29]	chr7	624437	1	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	33	2	2.99114	3.179785	3.36843	3.09234e-4	2.71917e-4	0.00477565	0.00404713
chr12	124013798	124013895	13130939	0	+	0.402062	(0.39,0.42]	chr12	1026671	10	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	22	2	2.21029	3.179575	4.14886	0.0100911	0.00415881	0.0625052	0.0325842
chr2	69338444	69338504	2718450	0	-	0.416667	(0.39,0.42]	chr2	242027	1	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.21029	3.179575	4.14886	0.0100911	0.00415881	0.0625052	0.0325842
chr16	71928808	71928908	15733933	0	+	0.46	(0.455,0.49]	chr16	1253455	11	UTR3	UTR3:EXON_MRNA	IST1	ENSG00000182149.21	ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000329908.12:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	3.06914	3.179545	3.28995	6.6649e-4	3.81851e-5	0.00820018	9.15499e-4
chr1	40067628	40067717	151930	0	+	0.494382	(0.49,0.53]	chr1	19022	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000479759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	2.46958	3.1792249999999997	3.88887	0.00344146	9.98984e-5	0.0292838	0.00180257
chr8	18059340	18059402	9732826	0	-	0.532258	(0.53,0.59]	chr8	736293	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.7898	3.179215	3.56863	0.0128364	3.93456e-5	0.0719798	8.48445e-4
chr12	120211819	120211918	13579798	0	-	0.484848	(0.455,0.49]	chr12	1068824	15	UTR3	UTR3:EXON_MRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000637624.1:ENST00000323871.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.76399	3.17918	3.59437	8.75629e-4	3.2026e-5	0.0106963	7.10499e-4
chr6	31829296	31829392	7116700	0	+	0.635417	(0.59,1]	chr6	546209	14	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	17	319	2	3.15519	3.17916	3.20313	4.61153e-6	2.92067e-6	0.00014480800000000001	1.09152e-4
chr22	40967798	40967884	18378006	0	+	0.476744	(0.455,0.49]	chr22	1564046	1	CDS	CDS:EXON_MRNA	RBX1	ENSG00000100387.9	ENST00000216225.9:ENST00000467617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	2.84202	3.1790700000000003	3.51612	5.41187e-4	7.83131e-6	0.00689416	2.45497e-4
chr3	96617658	96617754	4316744	0	-	0.375	(0.36,0.39]	chr3	360010	5	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	100	771	2	2.72293	3.179025	3.63512	5.72375e-8	4.16556e-12	3.81595e-6	8.01593e-10
chr1	15564282	15564359	69068	0	+	0.428571	(0.42,0.455]	chr1	7708	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJC16	ENSG00000116138.13	ENST00000375849.5:ENST00000475133.5:ENST00000616884.4:ENST00000375838.5:ENST00000375847.8:ENST00000483270.1:ENST00000472665.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr1	100080495	100080577	376743	0	+	0.439024	(0.42,0.455]	chr1	36517	1	CDS	CDS:UTR3:EXON_MRNA	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr10	110126416	110126503	11249287	0	+	0.425287	(0.42,0.455]	chr10	856917	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADD3	ENSG00000148700.15	ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000472568.5:ENST00000492162.5:ENST00000488799.5:ENST00000479805.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr13	31143857	31143923	13951361	0	-	0.454545	(0.42,0.455]	chr13	1095005	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr17	48862905	48862976	16255727	0	+	0.43662	(0.42,0.455]	chr17	1317494	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000507306.1:ENST00000509784.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr18	21791465	21791557	16778743	0	+	0.423913	(0.42,0.455]	chr18	1384138	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MIB1	ENSG00000101752.12	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr20	38148024	38148089	17963124	0	-	0.446154	(0.42,0.455]	chr20	1522353	2	CDS	CDS:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000468262.5:ENST00000474777.1:ENST00000373403.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr3	15644510	15644607	3326195	0	+	0.43299	(0.42,0.455]	chr3	292932	3	CDS	CDS:EXON_MRNA:INTRON	BTD	ENSG00000169814.16	ENST00000427382.2:ENST00000449107.7:ENST00000673620.1:ENST00000303498.10:ENST00000672141.1:ENST00000643237.3:ENST00000672065.1:ENST00000672112.1:ENST00000646371.1:ENST00000672427.1:ENST00000673467.1:ENST00000672760.1:ENST00000437172.6:ENST00000383778.5:ENST00000436193.5:ENST00000672892.1:ENST00000671928.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr4	67624993	67625090	5452728	0	-	0.43299	(0.42,0.455]	chr4	436052	1	CDS	CDS:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000514261.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr6	31409250	31409349	7114557	0	+	0.444444	(0.42,0.455]	chr6	545610	52	INTRON	INTRON	MICA:XXbac-BPG181B23.9	ENSG00000204520.14:ENSG00000288587.1	ENST00000616296.4:ENST00000674069.1:ENST00000673857.1:ENST00000673996.1:ENST00000673647.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr7	112784347	112784441	9013491	0	-	0.425532	(0.42,0.455]	chr7	688848	7	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.50649	3.178995	3.8515	0.0302857	0.0119089	0.130016	0.0686664
chr1	95195825	95195924	362145	0	+	0.434343	(0.42,0.455]	chr1	35683	41	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.8096	3.1789899999999998	3.54838	0.00253237	5.9986e-4	0.0233955	0.0075062
chr11	46784487	46784580	12383920	0	-	0.44086	(0.42,0.455]	chr11	956131	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000528593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	2.8096	3.1789899999999998	3.54838	0.00253237	5.9986e-4	0.0233955	0.0075062
chr1	99710805	99710877	1197359	0	-	0.541667	(0.53,0.59]	chr1	116842	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9:ENST00000489209.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	41	2	2.27113	3.17856	4.08599	0.0178853	3.38473e-5	0.0918323	7.45971e-4
chr1	153960097	153960197	1300327	0	-	0.56	(0.53,0.59]	chr1	130744	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	41	2	2.27113	3.17856	4.08599	0.0178853	3.38473e-5	0.0918323	7.45971e-4
chr7	44799471	44799480	8261639	0	+	0.444444	(0.42,0.455]	chr7	629465	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	180	2	2.59809	3.178515	3.75894	9.98845e-6	2.81851e-9	2.76351e-4	2.81357e-7
chr2	65239851	65239906	1854074	0	+	0.436364	(0.42,0.455]	chr2	175925	1	CDS	CDS:UTR5:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000476840.5:ENST00000260641.10:ENST00000471552.5:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	2.79182	3.17848	3.56514	2.81794e-4	3.86623e-5	0.00451339	8.37229e-4
chr12	3071706	3071794	13174249	0	-	0.590909	(0.59,1]	chr12	1030787	3	EXON_PSEUDO	EXON_PSEUDO	RP11-253E3.1	ENSG00000234589.4	ENST00000483097.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	119	2	1.98097	3.17843	4.37589	0.00354903	1.83082e-5	0.0291916	4.99708e-4
chr14	101979318	101979405	14495084	0	+	0.482759	(0.455,0.49]	chr14	1132951	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	2.79615	3.17826	3.56037	5.72551e-4	2.49149e-4	0.0078026	0.00376163
chr11	34471880	34471970	11906350	0	+	0.344444	(0.33,0.36]	chr11	909837	6	UTR3	UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	3.1043	3.178065	3.25183	5.89179e-4	3.87102e-4	0.00743488	0.00578322
chr12	104349314	104349413	13059147	0	+	0.282828	[0,0.29]	chr12	1017716	10	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	36	2	1.93281	3.178055	4.4233	0.01348	3.05074e-6	0.0751291	1.02351e-4
chr12	123597411	123597509	13127195	0	+	0.44898	(0.42,0.455]	chr12	1025792	8	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding	23	202	2	2.97775	3.177775	3.3778	9.5718e-7	1.9194e-8	4.26925e-5	1.36381e-6
chr17	44879555	44879638	16560217	0	-	0.506024	(0.49,0.53]	chr17	1359779	1	CDS	CDS:UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000587957.1:ENST00000593200.5:ENST00000588374.1:ENST00000589475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.11783	3.1777100000000003	4.23759	0.0142725	0.00436474	0.0780078	0.0335517
chr11	57332215	57332280	12394104	0	-	0.523077	(0.49,0.53]	chr11	958538	2	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.41364	3.177705	3.94177	0.0112538	0.0104929	0.0665375	0.063428
chrX	134460164	134460237	18863566	0	+	0.726027	(0.59,1]	chrX	1607357	1	UTR5	UTR5:EXON_MRNA	HPRT1	ENSG00000165704.15	ENST00000298556.8	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.06696	3.177695	4.28843	0.0170848	2.52144e-5	0.0897702	5.85193e-4
chr11	59574892	59574991	12400595	0	-	0.424242	(0.42,0.455]	chr11	959394	6	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	19	187	2	2.71897	3.1775349999999998	3.6361	3.04544e-5	2.31986e-9	7.52971e-4	2.19219e-7
chr7	42921857	42921931	8791620	0	-	0.432432	(0.42,0.455]	chr7	670206	1	CDS	CDS:UTR3:EXON_MRNA	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	53	2	2.19674	3.17749	4.15824	0.0254904	5.69008e-7	0.117089	2.47342e-5
chr3	40252696	40252795	3429010	0	+	0.444444	(0.42,0.455]	chr3	298205	3	INTRON	INTRON	MYRIP	ENSG00000170011.14	ENST00000444716.5:ENST00000302541.11:ENST00000396217.7:ENST00000425621.5:ENST00000458441.5:ENST00000458292.5:ENST00000459828.5:ENST00000539167.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	1.95205	3.177405	4.40276	0.0248244	0.0017618	0.113644	0.0180053
chr7	76329676	76329768	8863412	0	-	0.630435	(0.59,1]	chr7	677478	1	CDS	CDS:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	8	187	2	2.22725	3.1772299999999998	4.12721	0.00535937	9.21239e-8	0.0406564	5.20155e-6
chr8	111005549	111005649	10012029	0	-	0.44	(0.42,0.455]	chr8	754614	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1	lncRNA	lncRNA	lncRNA	lncRNA	4	37	2	2.32646	3.17709	4.02772	0.00624136	4.30844e-5	0.0443844	0.00100091
chr1	65570554	65570637	253002	0	+	0.39759	(0.39,0.42]	chr1	28803	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	55	2	2.62131	3.1769299999999996	3.73255	0.00609677	1.51578e-6	0.0439136	5.67784e-5
chr5	31553781	31553879	5919697	0	+	0.346939	(0.33,0.36]	chr5	463928	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.51797	3.176915	3.83586	0.0303594	1.7178e-4	0.130016	0.00302124
chr9	123902205	123902305	10849162	0	-	0.34	(0.33,0.36]	chr9	821839	228	INTRON	INTRON	DENND1A	ENSG00000119522.16	ENST00000373624.6:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.51797	3.176915	3.83586	0.0303594	1.7178e-4	0.130016	0.00302124
chr13	45341069	45341140	14005974	0	-	0.647887	(0.59,1]	chr13	1098106	1	UTR5	UTR5:EXON_MRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000490277.1:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	366	2	2.90938	3.176805	3.44423	2.71761e-5	2.12881e-7	6.92689e-4	1.07219e-5
chr1	669393	669493	823725	0	-	0.57	(0.53,0.59]	chr1	81486	364	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr1	27406109	27406208	908764	0	-	0.585859	(0.53,0.59]	chr1	95011	20	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr1	153933257	153933319	1300013	0	-	0.548387	(0.53,0.59]	chr1	130584	2	CDS	CDS:EXON_MRNA	DENND4B	ENSG00000198837.10	ENST00000361217.9:ENST00000480340.1:ENST00000368646.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr14	23033618	23033674	14528838	0	-	0.553571	(0.53,0.59]	chr14	1138389	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr18	31519869	31519937	16808878	0	+	0.588235	(0.53,0.59]	chr18	1386412	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13:ENST00000585206.1:ENST00000683654.1:ENST00000683614.1:ENST00000682087.1:ENST00000682241.1:ENST00000684461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr19	34215211	34215300	17298946	0	+	0.561798	(0.53,0.59]	chr19	1429675	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr19	47229341	47229440	17596402	0	-	0.555556	(0.53,0.59]	chr19	1481601	5	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr2	74526799	74526836	2743271	0	-	0.567568	(0.53,0.59]	chr2	244589	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AUP1	ENSG00000115307.17	ENST00000425118.5:ENST00000377526.4:ENST00000463900.5:ENST00000466894.5:ENST00000486234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr2	127999740	127999792	2870148	0	-	0.576923	(0.53,0.59]	chr2	256634	1	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr3	58171258	58171357	3501880	0	+	0.585859	(0.53,0.59]	chr3	306906	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000481470.5:ENST00000682297.1:ENST00000684439.1:ENST00000683114.1:ENST00000682503.1:ENST00000419752.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr7	43647557	43647634	8794001	0	-	0.571429	(0.53,0.59]	chr7	670414	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000459713.1:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.35511	3.17665	3.99819	0.0445399	0.0111308	0.172163	0.0665375
chr11	111740909	111741007	12602099	0	-	0.408163	(0.39,0.42]	chr11	976937	32	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	3.02517	3.17664	3.32811	0.00182819	8.3811e-4	0.0183913	0.00981548
chr19	49015085	49015150	17368339	0	+	0.6	(0.59,1]	chr19	1442331	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	2.53147	3.176625	3.82178	0.00807544	2.76767e-4	0.0531324	0.00409634
chr10	123165267	123165367	11299077	0	+	0.37	(0.36,0.39]	chr10	861591	3	UTR3	UTR3:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.38564	3.176405	3.96717	0.0476159	6.17763e-5	0.17993	0.00122919
chr7	121130209	121130294	8495156	0	+	0.364706	(0.36,0.39]	chr7	648378	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	3.16621	3.1763149999999998	3.18642	0.00359152	8.32577e-5	0.0302391	0.00157156
chrX	110004067	110004164	18819236	0	+	0.57732000000000006	(0.53,0.59]	chrX	1603894	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.87264	3.176275	3.47991	0.00168899	6.7738e-5	0.0175515	0.0013157
chr7	72942034	72942133	8330195	0	+	0.59596	(0.59,1]	chr7	634054	3	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	1.81066	3.1762449999999998	4.54183	0.0369806	0.0070583	0.145401	0.0478044
chr11	118757228	118757287	12625508	0	-	0.423729	(0.42,0.455]	chr11	979546	2	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	73	2	3.14242	3.176095	3.20977	2.89452e-5	1.69634e-5	7.24838e-4	4.28575e-4
chr17	7311540	7311640	16103933	0	+	0.51	(0.49,0.53]	chr17	1296305	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.59093	3.17596	3.76099	7.86196e-4	2.00194e-4	0.00929193	0.0034021
chr12	93479395	93479472	13019359	0	+	0.441558	(0.42,0.455]	chr12	1013474	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	3.04003	3.17582	3.31161	0.00186138	7.68268e-4	0.018635	0.00916171
chr19	40622578	40622667	17330464	0	+	0.662921	(0.59,1]	chr19	1436043	3	CDS	CDS:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000622565.4:ENST00000593463.5:ENST00000318809.11:ENST00000597816.5:ENST00000622107.4:ENST00000595665.1:ENST00000622457.1:ENST00000594116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.9891200000000002	3.175675	3.36223	0.00823979	0.00203572	0.0540283	0.0192213
chr7	150949602	150949696	9128650	0	-	0.56383	(0.53,0.59]	chr7	697467	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	111	2	2.64122	3.17537	3.70952	5.40832e-5	2.03311e-6	0.00109848	8.03067e-5
chr5	41919753	41919852	5952054	0	+	0.424242	(0.42,0.455]	chr5	466512	11	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.72686	3.1750049999999996	3.62315	0.00330337	4.234e-4	0.027613	0.00613535
chr16	70264957	70265029	15997010	0	-	0.513889	(0.49,0.53]	chr16	1284639	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000566969.1:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.99849	3.1749099999999997	3.35133	0.00630123	0.00150139	0.0445415	0.0152367
chr18	6462436	6462531	17007686	0	-	0.505263	(0.49,0.53]	chr18	1397496	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	26	2	2.99849	3.1749099999999997	3.35133	0.00630123	0.00150139	0.0445415	0.0152367
chr8	22140022	22140083	9750700	0	-	0.52459	(0.49,0.53]	chr8	737176	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2:ENST00000518664.5:ENST00000519074.5:ENST00000519875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.99849	3.1749099999999997	3.35133	0.00630123	0.00150139	0.0445415	0.0152367
chr6	2889663	2889762	7570638	0	-	0.333333	(0.33,0.36]	chr6	577661	25	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.70359	3.17456	4.64553	0.0245566	6.69086e-4	0.114841	0.00820018
chr3	195785639	195785738	4661123	0	-	0.606061	(0.59,1]	chr3	385270	70	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.17889	3.174325	4.16976	0.025085	4.80088e-5	0.116848	9.91058e-4
chr17	41523742	41523842	16542249	0	-	0.56	(0.53,0.59]	chr17	1355968	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000468880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	2.69635	3.1742749999999997	3.6522	0.00112127	2.31822e-5	0.0128408	5.49766e-4
chr10	50343818	50343916	11486901	0	-	0.561224	(0.53,0.59]	chr10	876733	4	CDS	CDS:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000361543.3:ENST00000626236.2:ENST00000619438.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr11	61904817	61904882	12406510	0	-	0.584615	(0.53,0.59]	chr11	960747	2	CDS	CDS:EXON_MRNA	RAB3IL1	ENSG00000167994.13	ENST00000301773.9:ENST00000531922.2:ENST00000394836.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr11	65965886	65965986	11987117	0	+	0.56	(0.53,0.59]	chr11	921183	1	CDS	CDS:EXON_MRNA	SART1	ENSG00000175467.15	ENST00000529532.5:ENST00000312397.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr12	132642819	132642907	13623790	0	-	0.556818	(0.53,0.59]	chr12	1073206	1	CDS	CDS:UTR3:EXON_MRNA	POLE	ENSG00000177084.18	ENST00000320574.10:ENST00000672742.1:ENST00000672002.1:ENST00000537064.5:ENST00000535270.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr16	89644630	89644729	16079412	0	-	0.575758	(0.53,0.59]	chr16	1292290	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CHMP1A	ENSG00000131165.16	ENST00000676275.1:ENST00000675909.1:ENST00000397901.8:ENST00000676355.1:ENST00000675161.1:ENST00000676402.1:ENST00000675016.1:ENST00000551981.6:ENST00000675309.1:ENST00000547687.2:ENST00000675760.1:ENST00000675952.1:ENST00000676342.1:ENST00000535997.7:ENST00000674799.1:ENST00000675536.1:ENST00000549328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr22	20145128	20145228	18297712	0	+	0.57	(0.53,0.59]	chr22	1553272	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZDHHC8	ENSG00000099904.16	ENST00000334554.12:ENST00000405930.3:ENST00000320602.11	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr4	151014484	151014542	5733026	0	-	0.551724	(0.53,0.59]	chr4	453016	2	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5:ENST00000514435.1:ENST00000510841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chr7	143598237	143598336	8582877	0	+	0.545455	(0.53,0.59]	chr7	655911	3	EXON_PSEUDO	EXON_PSEUDO	TCAF1P1	ENSG00000223459.6	ENST00000414990.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chrX	53378911	53379010	19076611	0	-	0.555556	(0.53,0.59]	chrX	1622486	49	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.34461	3.17427	4.00393	0.0457008	0.0108084	0.168044	0.064368
chrX	134427208	134427307	18863550	0	+	0.343434	(0.33,0.36]	chrX	1607356	20	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	2.97592	3.174175	3.37243	4.1482e-4	1.62656e-6	0.00607555	6.01397e-5
chr5	127551761	127551816	6205026	0	+	0.490909	(0.49,0.53]	chr5	483454	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2:ENST00000513427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.6129	3.17392	3.73494	0.0189345	0.0052746	0.0934721	0.0389109
chr1	16684628	16684727	871897	0	-	0.262626	[0,0.29]	chr1	89112	20	INTRON	INTRON	RP5-875O13.7	ENSG00000280114.1	ENST00000624828.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	34	2	1.81505	3.173785	4.53252	0.0409713	1.35309e-6	0.163285	5.16241e-5
chr2	197498674	197498748	3106896	0	-	0.527027	(0.49,0.53]	chr2	274676	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	52	2	1.80533	3.1737	4.54207	0.0163404	1.36824e-6	0.0867615	5.72609e-5
chr5	139274082	139274165	6248511	0	+	0.746988	(0.59,1]	chr5	486897	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000448190.6:ENST00000361059.7:ENST00000506188.5:ENST00000507692.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000513259.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000514110.5:ENST00000508735.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	126	2	2.44527	3.17365	3.90203	0.00123089	1.11836e-5	0.0136046	3.02696e-4
chr10	73250851	73250951	11570285	0	-	0.45	(0.42,0.455]	chr10	880680	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3:ENST00000471251.5:ENST00000473427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.57051	3.173585	3.77666	0.0265466	1.85215e-4	0.120071	0.00296795
chr7	25123950	25124019	8730820	0	-	0.521739	(0.49,0.53]	chr7	666455	1	CDS	CDS:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7:ENST00000409409.5:ENST00000409764.5:ENST00000413447.1	protein_coding	protein_coding	protein_coding	protein_coding	13	107	2	2.21575	3.17346	4.13117	4.1927e-4	5.53313e-8	0.00569498	3.70319e-6
chr1	43360192	43360290	164210	0	+	0.540816	(0.53,0.59]	chr1	20851	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000478882.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	2.79682	3.173415	3.55001	6.11776e-4	1.07815e-4	0.00818575	0.00192599
chr12	27003235	27003320	13269061	0	-	0.329412	(0.29,0.33]	chr12	1039903	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000542667.5:ENST00000535819.1:ENST00000543655.5:ENST00000543803.5:ENST00000542019.1:ENST00000539741.5:ENST00000543088.5:ENST00000535423.5:ENST00000512808.2:ENST00000545600.1:ENST00000539399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	3.13212	3.173335	3.21455	0.00551048	0.00283988	0.0414592	0.0245061
chr7	103472063	103472156	8962947	0	-	0.322581	(0.29,0.33]	chr7	686032	4	UTR3	UTR3:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	3.13212	3.173335	3.21455	0.00551048	0.00283988	0.0414592	0.0245061
chr7	134064812	134064907	8545541	0	+	0.315789	(0.29,0.33]	chr7	652016	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000468932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	3.13212	3.173335	3.21455	0.00551048	0.00283988	0.0414592	0.0245061
chr7	107161423	107161520	8455233	0	+	0.216495	[0,0.29]	chr7	645853	20	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.31133	3.1731949999999998	4.03506	0.00696038	4.20009e-5	0.0474632	8.92247e-4
chr16	70571912	70572011	15730181	0	+	0.444444	(0.42,0.455]	chr16	1253031	2	UTR3	UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	113	2	3.03628	3.17314	3.31	2.7402e-6	2.59798e-6	1.02904e-4	8.96083e-5
chr2	187554394	187554492	3071060	0	-	0.469388	(0.455,0.49]	chr2	271898	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.69053	3.17299	3.65545	0.0182983	3.50134e-4	0.0925808	0.0049086
chr11	61804710	61804810	12405957	0	-	0.52	(0.49,0.53]	chr11	960602	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	128	2	3.01991	3.172935	3.32596	2.36197e-5	2.29817e-7	6.15843e-4	1.13859e-5
chr21	45468695	45468786	18145465	0	+	0.714286	(0.59,1]	chr21	1539676	6	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	9	186	2	2.93771	3.1728899999999998	3.40807	0.00168288	1.32499e-6	0.0175167	5.08151e-5
chr15	42244108	42244167	15239179	0	-	0.355932	(0.33,0.36]	chr15	1200241	2	CDS	CDS:UTR3:EXON_MRNA	TMEM87A	ENSG00000103978.16	ENST00000389834.9:ENST00000448392.5:ENST00000562946.5:ENST00000569075.5:ENST00000568400.5:ENST00000563371.5:ENST00000561578.5:ENST00000566474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.97606	3.172825	3.36959	0.00871774	0.0014168	0.0558165	0.0145694
chr7	32868855	32868953	8759795	0	-	0.346939	(0.33,0.36]	chr7	668168	8	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.11	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.97606	3.172825	3.36959	0.00871774	0.0014168	0.0558165	0.0145694
chr16	2519745	2519839	15493411	0	+	0.574468	(0.53,0.59]	chr16	1227537	1	UTR3	UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	8	100	2	2.54082	3.172815	3.80481	0.00100675	1.96889e-7	0.011962800000000001	1.00279e-5
chr1	108635348	108635448	394937	0	+	0.5	(0.49,0.53]	chr1	38052	3	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	2.69746	3.172805	3.64815	0.00380414	2.96068e-6	0.0317723	9.96361e-5
chr11	6609575	6609639	11783080	0	+	0.484375	(0.455,0.49]	chr11	901973	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ILK	ENSG00000166333.14	ENST00000532063.5:ENST00000526711.5:ENST00000537806.5:ENST00000420936.6:ENST00000299421.9:ENST00000530016.5:ENST00000528995.5:ENST00000396751.6:ENST00000526318.2:ENST00000528784.5:ENST00000534706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr11	32389057	32389157	12340426	0	-	0.48	(0.455,0.49]	chr11	953635	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WT1	ENSG00000184937.16	ENST00000379077.9:ENST00000452863.10:ENST00000379079.8:ENST00000530998.5:ENST00000332351.9:ENST00000651819.1:ENST00000652724.1:ENST00000640146.2:ENST00000652579.1:ENST00000650861.1:ENST00000651668.1:ENST00000651533.1:ENST00000639907.2:ENST00000650745.1:ENST00000651794.1:ENST00000651459.1:ENST00000448076.9:ENST00000527882.5:ENST00000650986.1:ENST00000639563.3:ENST00000526685.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr12	116009040	116009132	13555462	0	-	0.48913	(0.455,0.49]	chr12	1067086	8	CDS	CDS:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000549786.2:ENST00000548743.2:ENST00000549755.1:ENST00000649762.1:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr12	131995156	131995256	13160062	0	+	0.48	(0.455,0.49]	chr12	1028643	2	SS5_PROX	SS5_PROX:INTRON	EP400	ENSG00000183495.14	ENST00000389561.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr14	20474860	20474948	14171358	0	+	0.488636	(0.455,0.49]	chr14	1109145	2	CDS	CDS:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000557229.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr14	102040371	102040439	14495794	0	+	0.455882	(0.455,0.49]	chr14	1133230	3	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1:ENST00000556499.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr17	20999595	20999693	16477781	0	-	0.459184	(0.455,0.49]	chr17	1346694	1	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr17	21000380	21000478	16477789	0	-	0.469388	(0.455,0.49]	chr17	1346694	9	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr19	30015535	30015592	17284157	0	+	0.45614	(0.455,0.49]	chr19	1428508	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000392271.6:ENST00000574110.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr2	200818307	200818393	2309343	0	+	0.465116	(0.455,0.49]	chr2	208946	2	CDS	CDS:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000410110.6:ENST00000409600.6:ENST00000409226.5:ENST00000452790.6:ENST00000463310.1:ENST00000491576.1:ENST00000359893.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr5	138399859	138399935	6244281	0	+	0.486842	(0.455,0.49]	chr5	486529	1	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000504095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr6	35574366	35574464	7676285	0	-	0.459184	(0.455,0.49]	chr6	588423	9	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr6	109116290	109116390	7325244	0	+	0.49	(0.455,0.49]	chr6	562900	98	INTRON	INTRON	CEP57L1	ENSG00000183137.15	ENST00000521277.5:ENST00000521737.5:ENST00000407272.5:ENST00000519286.5:ENST00000518329.5:ENST00000522461.5:ENST00000518853.5:ENST00000521522.5:ENST00000524064.5:ENST00000522608.5:ENST00000517392.6:ENST00000519407.5:ENST00000521503.5:ENST00000519095.5:ENST00000520610.5:ENST00000368968.6:ENST00000522490.5:ENST00000523209.5:ENST00000368970.6:ENST00000520883.5:ENST00000520761.1:ENST00000523787.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr7	64142305	64142401	8831673	0	-	0.46875	(0.455,0.49]	chr7	674355	9	EXON_PSEUDO	EXON_PSEUDO	RP11-165H4.2	ENSG00000236976.1	ENST00000454924.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr8	23191693	23191793	9756629	0	-	0.49	(0.455,0.49]	chr8	737614	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TNFRSF10A	ENSG00000104689.10	ENST00000221132.8:ENST00000613472.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.53286	3.172805	3.81275	0.0282409	0.0138827	0.124386	0.0760883
chr12	124336752	124336837	13597748	0	-	0.576471	(0.53,0.59]	chr12	1071424	1	CDS	CDS:EXON_MRNA:PRIMIRNA	NCOR2:MIR6880	ENSG00000196498.13:ENSG00000275967.1	ENST00000404621.5:ENST00000405201.5:ENST00000404121.6:ENST00000356219.7:ENST00000429285.6:ENST00000622851.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	54	2	2.79538	3.172695	3.55001	6.11776e-4	2.47731e-4	0.00818575	0.00374232
chr1	116944760	116944843	424764	0	+	0.795181	(0.59,1]	chr1	41931	2	CDS	CDS:EXON_MRNA	PTGFRN	ENSG00000134247.10	ENST00000393203.3	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr11	12263376	12263467	11805493	0	+	0.692308	(0.59,1]	chr11	904120	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MICAL2	ENSG00000133816.18	ENST00000683283.1:ENST00000256194.8:ENST00000646065.1:ENST00000530691.5:ENST00000525618.5:ENST00000530021.5:ENST00000525444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr14	105146442	105146500	14800019	0	-	0.655172	(0.59,1]	chr14	1160120	2	CDS	CDS:EXON_MRNA	JAG2	ENSG00000184916.9	ENST00000347004.2:ENST00000331782.8:ENST00000546616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr17	78973065	78973120	16698084	0	-	0.654545	(0.59,1]	chr17	1376221	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	LGALS3BP	ENSG00000108679.13	ENST00000591778.5:ENST00000262776.8:ENST00000587311.5:ENST00000586720.5:ENST00000587251.5:ENST00000588508.1:ENST00000588198.5:ENST00000589527.5:ENST00000588587.5:ENST00000592255.1:ENST00000585407.5:ENST00000589775.6:ENST00000589906.5:ENST00000587310.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr19	45485707	45485789	17588749	0	-	0.609756	(0.59,1]	chr19	1480162	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RTN2	ENSG00000125744.12	ENST00000587597.5:ENST00000590526.5:ENST00000344680.8:ENST00000591286.5:ENST00000245923.9:ENST00000430715.6:ENST00000588036.5:ENST00000593187.5:ENST00000590746.5:ENST00000593129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr19	50414814	50414902	17376133	0	+	0.625	(0.59,1]	chr19	1444513	1	CDS	CDS:UTR3:EXON_MRNA	POLD1	ENSG00000062822.15	ENST00000600859.5:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000644560.1:ENST00000593407.5:ENST00000593981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr20	4699320	4699413	17661018	0	+	0.731183	(0.59,1]	chr20	1493235	1	CDS	CDS:EXON_MRNA	PRNP	ENSG00000171867.18	ENST00000430350.2:ENST00000379440.9:ENST00000424424.2:ENST00000457586.2	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr21	44313912	44313966	18140034	0	+	0.648148	(0.59,1]	chr21	1539000	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000496824.5:ENST00000466134.5:ENST00000491298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr7	94004216	94004299	8930033	0	-	0.638554	(0.59,1]	chr7	681480	1	UTR5	UTR5:EXON_MRNA	BET1	ENSG00000105829.13	ENST00000357520.8:ENST00000650276.1:ENST00000222547.8:ENST00000433727.5:ENST00000425626.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr8	142727776	142727859	9645791	0	+	0.722892	(0.59,1]	chr8	730676	5	CDS	CDS:EXON_MRNA	THEM6	ENSG00000130193.8	ENST00000336138.4:ENST00000520217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.4994	3.172485	3.84557	0.0410704	0.0333573	0.163285	0.137922
chr5	150449702	150449739	6914328	0	-	0.594595	(0.59,1]	chr5	529177	1	UTR5	UTR5:EXON_MRNA	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000519690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	65	1239	2	2.79859	3.172295	3.546	3.23394e-6	5.56183e-9	1.1836e-4	4.68588e-7
chr20	32848826	32848925	17755861	0	+	0.363636	(0.36,0.39]	chr20	1498956	2	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.42114	3.17216	3.92318	0.00564641	3.28475e-6	0.0422191	1.088e-4
chr12	911254	911353	12681697	0	+	0.30303	(0.29,0.33]	chr12	984184	26	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.34977	3.1721500000000002	3.99453	9.41664e-4	8.03892e-5	0.010642	0.00167226
chr5	37310551	37310647	6540150	0	-	0.375	(0.36,0.39]	chr5	506566	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	2.02118	3.1719150000000003	4.32265	0.0251625	6.3224e-6	0.117055	1.88366e-4
chr1	171571370	171571421	537410	0	+	0.509804	(0.49,0.53]	chr1	57690	2	CDS	CDS:EXON_MRNA:INTRON	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.26641	3.1718	4.07719	0.0190546	0.0074411	0.093872	0.0492519
chr17	17821120	17821220	16465778	0	-	0.51	(0.49,0.53]	chr17	1344738	2	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	2.26641	3.1718	4.07719	0.0190546	0.0074411	0.093872	0.0492519
chr7	159018046	159018146	8639473	0	+	0.53	(0.49,0.53]	chr7	660125	4	SS5_PROX	SS5_PROX:INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	2	19	2	2.26641	3.1718	4.07719	0.0190546	0.0074411	0.093872	0.0492519
chr1	26473702	26473732	109577	0	+	0.566667	(0.53,0.59]	chr1	13080	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000468388.5:ENST00000479815.5:ENST00000460563.5:ENST00000464888.5:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5:ENST00000466194.1:ENST00000493418.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	94	2	2.34398	3.171705	3.99943	0.00143671	2.15316e-7	0.0154399	1.08055e-5
chr3	96618139	96618236	4316749	0	-	0.381443	(0.36,0.39]	chr3	360010	10	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	2.38112	3.17164	3.96216	0.0031815	8.57134e-9	0.0279343	6.77938e-7
chr4	143553184	143553281	5136631	0	+	0.28866000000000003	[0,0.29]	chr4	415936	1	UTR3	UTR3:EXON_MRNA	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	3.0735	3.171555	3.26961	0.00785095	0.00229774	0.0520241	0.0210664
chr8	100709223	100709301	9976003	0	-	0.282051	[0,0.29]	chr8	752673	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	3.0735	3.171555	3.26961	0.00785095	0.00229774	0.0520241	0.0210664
chr19	3984206	3984278	17430266	0	-	0.666667	(0.59,1]	chr19	1454737	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600720.1:ENST00000594885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	392	2	3.03899	3.1715299999999997	3.30407	8.54543e-6	4.5246e-7	2.64863e-4	2.03369e-5
chr7	133035562	133035655	9078012	0	-	0.612903	(0.59,1]	chr7	693067	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	CHCHD3:RP11-371A22.1	ENSG00000106554.13:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000634247.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	16	265	2	2.139	3.1714199999999995	4.20384	8.38739e-4	5.27932e-8	0.0103412	3.2354e-6
chr7	6023931	6024023	8662403	0	-	0.543478	(0.53,0.59]	chr7	662531	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1	protein_coding	protein_coding	protein_coding	protein_coding	45	521	2	2.55081	3.17138	3.79195	4.59649e-6	3.19446e-11	1.59615e-4	4.90316e-9
chr22	41680243	41680303	18520292	0	-	0.483333	(0.455,0.49]	chr22	1581366	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000488571.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	24	2	1.80094	3.17134	4.54174	0.0265942	0.00130137	0.120205	0.0136936
chr13	24435081	24435179	13932636	0	-	0.561224	(0.53,0.59]	chr13	1093108	8	CDS	CDS:EXON_MRNA	PARP4	ENSG00000102699.6	ENST00000381989.4	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.0404	3.171175	4.30195	0.0362529	0.00421989	0.148525	0.0328662
chr4	182891111	182891206	5826117	0	-	0.578947	(0.53,0.59]	chr4	457566	12	UTR3	UTR3:EXON_MRNA	DCTD	ENSG00000129187.15	ENST00000500813.6:ENST00000438320.7:ENST00000357067.7:ENST00000507543.5:ENST00000507631.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.0404	3.171175	4.30195	0.0362529	0.00421989	0.148525	0.0328662
chr9	35712903	35712973	10639631	0	-	0.571429	(0.53,0.59]	chr9	805073	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.0404	3.171175	4.30195	0.0362529	0.00421989	0.148525	0.0328662
chrX	153970840	153970937	19275823	0	-	0.57732000000000006	(0.53,0.59]	chrX	1637988	1	UTR5	UTR5:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	1.90953	3.17116	4.43279	0.0517711	0.0026472	0.193577	0.0231864
chr3	40310892	40310974	3429103	0	+	0.487805	(0.455,0.49]	chr3	298217	1	CDS	CDS:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1:ENST00000487151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	101	2	3.11472	3.171105	3.22749	3.40155e-5	9.91723e-7	8.31666e-4	3.96464e-5
chr1	26259616	26259709	108705	0	+	0.419355	(0.39,0.42]	chr1	12925	1	CDS	CDS:EXON_MRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.01081	3.171055	4.3313	0.0207537	0.00209984	0.100574	0.0204266
chr3	51995424	51995461	4181366	0	-	0.513514	(0.49,0.53]	chr3	352470	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5:ENST00000492277.5:ENST00000481629.1:ENST00000486565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	252	2	2.13733	3.1710149999999997	4.2047	3.42347e-4	1.0823e-11	0.00520619	1.86743e-9
chr4	78872613	78872705	4912305	0	+	0.478261	(0.455,0.49]	chr4	404392	1	CDS	CDS:UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	58	2	1.91811	3.1708	4.42349	0.00411364	3.27827e-6	0.0325842	1.08637e-4
chr12	111455998	111456098	13539874	0	-	0.52	(0.49,0.53]	chr12	1065244	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000475132.1:ENST00000550844.2:ENST00000468920.2:ENST00000643474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	78	2	2.68653	3.170745	3.65496	0.00122977	5.79373e-7	0.013593	2.50873e-5
chr8	97852435	97852532	9507225	0	+	0.381443	(0.36,0.39]	chr8	722769	11	UTR3	UTR3:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	2.76778	3.1707	3.57362	0.00365703	1.06281e-6	0.0307238	4.21166e-5
chr1	89584497	89584594	345898	0	+	0.340206	(0.33,0.36]	chr1	34046	19	CDS	CDS:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.7655	3.1705449999999997	3.57559	0.0262108	0.0175892	0.117079	0.0918323
chr16	20801202	20801280	15883848	0	-	0.358974	(0.33,0.36]	chr16	1270487	1	CDS	CDS:EXON_MRNA	ERI2	ENSG00000196678.14	ENST00000300005.7:ENST00000564349.5:ENST00000357967.9:ENST00000569729.5:ENST00000568805.5:ENST00000563117.5:ENST00000567859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.7655	3.1705449999999997	3.57559	0.0262108	0.0175892	0.117079	0.0918323
chr3	120328902	120329001	4404406	0	-	0.333333	(0.33,0.36]	chr3	365211	45	UTR3	UTR3:EXON_MRNA	LRRC58	ENSG00000163428.4	ENST00000295628.4	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.7655	3.1705449999999997	3.57559	0.0262108	0.0175892	0.117079	0.0918323
chr5	64724185	64724284	6612948	0	-	0.333333	(0.33,0.36]	chr5	511139	62	UTR3	UTR3:EXON_MRNA	SREK1IP1	ENSG00000153006.16	ENST00000513458.9	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.7655	3.1705449999999997	3.57559	0.0262108	0.0175892	0.117079	0.0918323
chr7	139302236	139302336	8565392	0	+	0.35	(0.33,0.36]	chr7	653581	45	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.7655	3.1705449999999997	3.57559	0.0262108	0.0175892	0.117079	0.0918323
chr3	49029252	49029350	4171729	0	-	0.591837	(0.59,1]	chr3	350244	1	CDS_START	CDS_START:CDS:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000678177.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677108.1:ENST00000677593.1:ENST00000485500.1:ENST00000496837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	123	2	2.08167	3.170385	4.2591	0.00939499	1.20565e-6	0.0590912	4.68197e-5
chr17	50381528	50381625	16585108	0	-	0.443299	(0.42,0.455]	chr17	1363112	4	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	11	104	2	2.85599	3.170105	3.48422	7.82573e-5	2.5284e-7	0.00163426	1.24119e-5
chr20	483160	483260	17871445	0	-	0.39	(0.36,0.39]	chr20	1511949	45	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	85	2	3.12614	3.1700999999999997	3.21406	1.44599e-5	2.30074e-6	4.07816e-4	8.09648e-5
chr1	37997776	37997870	950330	0	-	0.617021	(0.59,1]	chr1	100154	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.32455	3.17	4.01545	0.0520547	0.0251889	0.193787	0.114168
chr17	7251798	7251879	16429213	0	-	0.765432	(0.59,1]	chr17	1339376	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTDNEP1:RP1-4G17.5	ENSG00000175826.12:ENSG00000262302.1	ENST00000573600.5:ENST00000318988.10:ENST00000572043.5:ENST00000575783.5:ENST00000571409.1:ENST00000577138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.32455	3.17	4.01545	0.0520547	0.0251889	0.193787	0.114168
chr17	42125245	42125334	16545934	0	-	0.640449	(0.59,1]	chr17	1356948	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	23	2	2.32455	3.17	4.01545	0.0520547	0.0251889	0.193787	0.114168
chr21	44326862	44326947	18140180	0	+	0.729412	(0.59,1]	chr21	1539056	1	UTR3	UTR3:EXON_MRNA	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5:ENST00000498841.5:ENST00000467315.5:ENST00000460521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	23	2	2.32455	3.17	4.01545	0.0520547	0.0251889	0.193787	0.114168
chr7	157139182	157139272	8635433	0	+	0.822222	(0.59,1]	chr7	659628	4	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.32455	3.17	4.01545	0.0520547	0.0251889	0.193787	0.114168
chr16	85675213	85675312	15798105	0	+	0.555556	(0.53,0.59]	chr16	1257094	28	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.8006	3.16995	3.5393	0.00233666	6.46017e-4	0.0221314	0.00799743
chr3	129275193	129275292	3730614	0	+	0.50505	(0.49,0.53]	chr3	318980	1	CDS	CDS:UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000514478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.21702	3.1698250000000003	4.12263	0.00959574	0.00591451	0.0603269	0.0427941
chr1	212100251	212100343	701685	0	+	0.543478	(0.53,0.59]	chr1	71173	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1:ENST00000463791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	1.96733	3.16972	4.37211	0.022694	5.43864e-6	0.105117	1.81467e-4
chr2	110650624	110650704	2838047	0	-	0.575	(0.53,0.59]	chr2	253312	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5:ENST00000490632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	2.94231	3.16968	3.39705	3.05722e-4	1.10308e-4	0.00442973	0.00211768
chr20	34540624	34540707	17765580	0	+	0.457831	(0.455,0.49]	chr20	1500417	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ITCH:DYNLRB1	ENSG00000078747.16:ENSG00000125971.17	ENST00000664852.1:ENST00000480759.1:ENST00000357156.7:ENST00000374846.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	69	2	2.44685	3.1696	3.89235	1.29316e-4	9.60445e-5	0.00223746	0.00190731
chr8	124549792	124549892	9593540	0	+	0.57	(0.53,0.59]	chr8	727765	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1:ENST00000518657.6:ENST00000678801.1:ENST00000678753.1:ENST00000517830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	70	2	2.56002	3.1695349999999998	3.77905	0.00634904	1.21619e-6	0.0446708	4.71713e-5
chr2	87521362	87521440	1932089	0	+	0.589744	(0.53,0.59]	chr2	182285	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	CYTOR:RP13-511M20.1	ENSG00000222041.11:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000629257.1:ENST00000437561.1:ENST00000645729.1:ENST00000413202.1:ENST00000643509.1:ENST00000409054.2:ENST00000643321.1	lncRNA	lncRNA	lncRNA	lncRNA	3	38	2	2.78899	3.1695	3.55001	0.00245784	6.11776e-4	0.0221765	0.00818575
chr1	179846452	179846546	1394650	0	-	0.531915	(0.53,0.59]	chr1	141291	4	CDS	CDS:EXON_MRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.65894	3.169435	3.67993	0.0193255	3.22778e-4	0.0943643	0.0046122
chr17	7508400	7508475	16105248	0	+	0.546667	(0.53,0.59]	chr17	1296765	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000573603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	31	2	2.65894	3.169435	3.67993	0.0193255	3.22778e-4	0.0943643	0.0046122
chr1	149852824	149852894	464865	0	+	0.628571	(0.59,1]	chr1	46809	2	CDS	CDS:EXON_MRNA	H3C15	ENSG00000203852.3	ENST00000403683.1	protein_coding	protein_coding	protein_coding	protein_coding	7	152	2	2.6892	3.169275	3.64935	0.00147019	3.09613e-6	0.0149767	1.14907e-4
chr7	56055710	56055797	8290459	0	+	0.425287	(0.42,0.455]	chr7	631468	2	CDS	CDS:EXON_MRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000493855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.81191	3.16925	3.52659	6.87022e-4	6.31824e-4	0.00876781	0.0078507
chr1	30872224	30872323	915891	0	-	0.525253	(0.49,0.53]	chr1	95914	29	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.38683	3.169215	3.9516	0.012654	6.96459e-5	0.0718207	0.0013446
chr9	83663874	83663958	10710384	0	-	0.511905	(0.49,0.53]	chr9	810186	1	CDS	CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.38683	3.169215	3.9516	0.012654	6.96459e-5	0.0718207	0.0013446
chr3	184149977	184150069	3947925	0	+	0.576087	(0.53,0.59]	chr3	331911	4	EXON_PSEUDO	EXON_PSEUDO	RP11-778D9.4	ENSG00000228205.1	ENST00000433853.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	105	2	2.59529	3.169145	3.743	3.63905e-4	3.26629e-7	0.00547347	1.54181e-5
chr21	33553208	33553307	18101189	0	+	0.555556	(0.53,0.59]	chr21	1534527	26	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	3.12943	3.169085	3.20874	0.00278422	4.81557e-4	0.0241009	0.00677016
chr1	109237243	109237308	398110	0	+	0.538462	(0.53,0.59]	chr1	38595	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000369923.4:ENST00000468588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	39	2	2.47	3.169045	3.86809	0.0089333	1.18973e-4	0.0567495	0.00207755
chr3	150563521	150563614	3807749	0	+	0.376344	(0.36,0.39]	chr3	324998	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	3.00558	3.168995	3.33241	0.00193631	2.21724e-4	0.0192272	0.00341828
chrX	155941882	155941951	18924228	0	+	0.405797	(0.39,0.42]	chrX	1612667	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000479687.6:ENST00000488344.6:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	66	2	2.87327	3.168875	3.46448	6.4732e-5	1.2823e-5	0.00126536	3.70041e-4
chr1	114396556	114396655	1236967	0	-	0.333333	(0.33,0.36]	chr1	120945	39	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000492227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.82394	3.1688599999999996	4.51378	0.0494504	0.00118147	0.18557	0.0127276
chr13	110973355	110973454	13897440	0	+	0.333333	(0.33,0.36]	chr13	1089162	69	INTRON	INTRON	LINC00431	ENSG00000225760.2	ENST00000440735.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	17	2	1.82394	3.1688599999999996	4.51378	0.0494504	0.00118147	0.18557	0.0127276
chr8	73551716	73551812	9890295	0	-	0.34375	(0.33,0.36]	chr8	747728	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000523533.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.82394	3.1688599999999996	4.51378	0.0494504	0.00118147	0.18557	0.0127276
chr14	34933516	34933616	14579988	0	-	0.34	(0.33,0.36]	chr14	1142331	1	SS5_PROX	SS5_PROX:INTRON	SRP54-AS1	ENSG00000258704.6	ENST00000556355.5:ENST00000555015.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	1	11	2	2.51887	3.168595	3.81832	0.0358636	0.0135793	0.147298	0.0745701
chr15	89612130	89612229	15095679	0	+	0.353535	(0.33,0.36]	chr15	1187458	28	INTRON	INTRON	TICRR	ENSG00000140534.14	ENST00000268138.12:ENST00000560985.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.51887	3.168595	3.81832	0.0358636	0.0135793	0.147298	0.0745701
chr3	194428844	194428917	4654736	0	-	0.356164	(0.33,0.36]	chr3	384388	1	CDS	CDS:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.51887	3.168595	3.81832	0.0358636	0.0135793	0.147298	0.0745701
chr4	1808476	1808575	4681327	0	+	0.353535	(0.33,0.36]	chr4	388080	13	UTR3	UTR3:EXON_MRNA	FGFR3	ENSG00000068078.20	ENST00000412135.7:ENST00000440486.8:ENST00000481110.7:ENST00000340107.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.51887	3.168595	3.81832	0.0358636	0.0135793	0.147298	0.0745701
chr9	33912030	33912098	10237923	0	+	0.338235	(0.33,0.36]	chr9	769827	2	CDS	CDS:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.51887	3.168595	3.81832	0.0358636	0.0135793	0.147298	0.0745701
chr10	97430469	97430561	11212367	0	+	0.554348	(0.53,0.59]	chr10	852969	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	1.89806	3.168345	4.43863	0.0532477	0.00254763	0.184818	0.0233955
chr14	24216946	24217036	14534515	0	-	0.566667	(0.53,0.59]	chr14	1139779	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NEDD8-MDP1:NEDD8	ENSG00000255526.6:ENSG00000129559.13	ENST00000605847.5:ENST00000534348.5:ENST00000530579.6:ENST00000604306.1:ENST00000250495.10:ENST00000396828.8:ENST00000527046.5:ENST00000531430.5:ENST00000560427.1:ENST00000526430.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	1.89806	3.168345	4.43863	0.0532477	0.00254763	0.184818	0.0233955
chr4	17583499	17583599	4734028	0	+	0.58	(0.53,0.59]	chr4	392722	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	LAP3	ENSG00000002549.13	ENST00000226299.9:ENST00000618908.4:ENST00000606142.5:ENST00000509583.1:ENST00000507960.1:ENST00000508014.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	1.89806	3.168345	4.43863	0.0532477	0.00254763	0.184818	0.0233955
chr7	143598137	143598237	8582876	0	+	0.59	(0.53,0.59]	chr7	655911	2	EXON_PSEUDO	EXON_PSEUDO	TCAF1P1	ENSG00000223459.6	ENST00000414990.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	21	2	1.89806	3.168345	4.43863	0.0532477	0.00254763	0.184818	0.0233955
chr16	21404522	21404622	15888076	0	-	0.57	(0.53,0.59]	chr16	1271077	4	SS5_PROX	SS5_PROX:INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.0289	3.16833	4.30776	0.0373899	0.00407289	0.146698	0.0324137
chr16	30083480	30083567	15628527	0	+	0.563218	(0.53,0.59]	chr16	1239826	2	CDS	CDS:UTR3:EXON_MRNA	PPP4C	ENSG00000149923.14	ENST00000563732.5:ENST00000279387.12:ENST00000567040.5:ENST00000563597.5:ENST00000563200.5:ENST00000564966.5:ENST00000566749.5:ENST00000562664.5:ENST00000627746.2:ENST00000562222.5:ENST00000561610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.0289	3.16833	4.30776	0.0373899	0.00407289	0.146698	0.0324137
chr20	35003409	35003478	17950356	0	-	0.57971	(0.53,0.59]	chr20	1520427	1	CDS	CDS:EXON_MRNA	TRPC4AP	ENSG00000100991.12	ENST00000451813.6:ENST00000252015.3	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.0289	3.16833	4.30776	0.0373899	0.00407289	0.146698	0.0324137
chr22	35413930	35413986	18359525	0	+	0.535714	(0.53,0.59]	chr22	1561027	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000464908.5:ENST00000493076.5:ENST00000493569.5:ENST00000465557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.0289	3.16833	4.30776	0.0373899	0.00407289	0.146698	0.0324137
chrX	71250114	71250203	19107064	0	-	0.573034	(0.53,0.59]	chrX	1625462	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1:ENST00000373982.5:ENST00000373981.5:ENST00000373978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.0289	3.16833	4.30776	0.0373899	0.00407289	0.146698	0.0324137
chr10	69379939	69380017	11096629	0	+	0.564103	(0.53,0.59]	chr10	843771	2	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.94231	3.168235	3.39416	0.00126006	3.05722e-4	0.013837	0.00442973
chr17	50369986	50370086	16585000	0	-	0.55	(0.53,0.59]	chr17	1363083	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL27	ENSG00000108826.16	ENST00000507088.5:ENST00000508200.5:ENST00000225969.9:ENST00000442592.3:ENST00000503633.5:ENST00000511860.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.87264	3.1680650000000004	3.46349	0.00168899	9.2216e-4	0.0175515	0.0104432
chr12	49186550	49186631	13324034	0	-	0.54321	(0.53,0.59]	chr12	1045771	4	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TUBA1A	ENSG00000167552.15	ENST00000679733.1:ENST00000552924.2:ENST00000550767.6:ENST00000550811.2:ENST00000547939.6:ENST00000301071.12:ENST00000295766.9:ENST00000546918.1:ENST00000548363.1:ENST00000550254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.72478	3.1679	3.61102	0.00324675	3.01487e-5	0.0282494	6.78876e-4
chr18	8914575	8914675	16750703	0	+	0.44	(0.42,0.455]	chr18	1381314	2	SS5_PROX	SS5_PROX:INTRON	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	13	96	2	2.60021	3.1678550000000003	3.7355	2.22005e-5	1.29688e-5	5.29017e-4	3.73168e-4
chr12	6537583	6537665	12713618	0	+	0.646341	(0.59,1]	chr12	986662	1	CDS	CDS:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000492719.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	523	2	3.01843	3.16771	3.31699	1.39939e-6	5.68239e-7	5.30677e-5	2.74237e-5
chr16	2766093	2766191	15494936	0	+	0.612245	(0.59,1]	chr16	1227802	47	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	3.08103	3.167685	3.25434	4.06738e-4	2.20237e-4	0.00598202	0.0034006
chr8	20220501	20220601	9220102	0	+	0.37	(0.36,0.39]	chr8	704735	2	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.84089	3.16765	3.49441	0.0128123	7.81559e-4	0.0719798	0.00927662
chrX	134393567	134393634	18863204	0	+	0.38806	(0.36,0.39]	chrX	1607321	2	CDS	CDS:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5:ENST00000370800.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.84089	3.16765	3.49441	0.0128123	7.81559e-4	0.0719798	0.00927662
chr19	580287	580378	17188304	0	+	0.67033	(0.59,1]	chr19	1410767	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	62	2	2.67996	3.167525	3.65509	0.00470478	5.95213e-4	0.0363963	0.00746384
chr11	86031588	86031611	12526480	0	-	0.347826	(0.33,0.36]	chr11	972279	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.7655	3.1674949999999997	3.56949	0.0175892	5.48184e-4	0.0918323	0.00697082
chr11	67586428	67586477	11996995	0	+	0.653061	(0.59,1]	chr11	923179	1	CDS	CDS:UTR3:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1:ENST00000495996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	241	2	3.13496	3.16738	3.1998	2.128e-5	5.27567e-6	5.65139e-4	1.61639e-4
chr1	27906927	27906984	910929	0	-	0.491228	(0.49,0.53]	chr1	95253	1	CDS	CDS:EXON_MRNA	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.90685	3.167375	4.4279	0.0534351	0.00196987	0.184995	0.0193972
chr5	34923132	34923183	5930598	0	+	0.45098	(0.42,0.455]	chr5	464755	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BRIX1	ENSG00000113460.13	ENST00000510960.5:ENST00000515798.5:ENST00000336767.6:ENST00000506023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	31	2	2.70611	3.1673349999999996	3.62856	0.00397496	4.02604e-4	0.0322851	0.00549837
chr8	47967441	47967485	9316187	0	+	0.522727	(0.49,0.53]	chr8	713548	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.05119	3.167255	4.28332	0.0360743	0.00338762	0.145024	0.0288632
chr1	17408991	17409089	874020	0	-	0.530612	(0.53,0.59]	chr1	89600	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	3.12109	3.1671500000000004	3.21321	6.1362e-5	3.24817e-5	0.00133162	7.18962e-4
chr1	47432228	47432325	986634	0	-	0.525773	(0.49,0.53]	chr1	104212	2	EXON_LNCRNA	EXON_LNCRNA	FOXD2-AS1	ENSG00000237424.1	ENST00000445551.1	lncRNA	lncRNA	lncRNA	lncRNA	3	27	2	2.59881	3.166875	3.73494	0.0189345	0.00184545	0.0934721	0.0178046
chr1	6526762	6526829	845051	0	-	0.58209	(0.53,0.59]	chr1	85314	2	CDS	CDS:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr1	19255999	19256051	85440	0	+	0.576923	(0.53,0.59]	chr1	9621	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRTO4	ENSG00000053372.5	ENST00000330263.5:ENST00000493700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr1	43363569	43363656	968535	0	-	0.563218	(0.53,0.59]	chr1	102048	3	UTR3	UTR3:EXON_MRNA	ELOVL1	ENSG00000066322.15	ENST00000413844.3:ENST00000621943.4:ENST00000372458.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr1	229265338	229265438	1541459	0	-	0.57	(0.53,0.59]	chr1	154296	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP5-1061H20.4	ENSG00000177788.6	ENST00000654028.1:ENST00000653511.1:ENST00000656366.1:ENST00000429227.1:ENST00000660017.1	lncRNA	lncRNA	lncRNA	lncRNA	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr12	113318963	113319017	13548416	0	-	0.555556	(0.53,0.59]	chr12	1066497	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC8B1	ENSG00000089060.12	ENST00000552014.5:ENST00000202831.7:ENST00000680972.1:ENST00000552565.5:ENST00000550672.5:ENST00000546737.5:ENST00000553238.5:ENST00000551230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr16	28488590	28488662	15905608	0	-	0.583333	(0.53,0.59]	chr16	1273643	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-435I10.4:CLN3	ENSG00000261832.6:ENSG00000188603.22	ENST00000635887.1:ENST00000637376.1:ENST00000636078.1:ENST00000636503.1:ENST00000568224.4:ENST00000636017.1:ENST00000636866.1:ENST00000637299.1:ENST00000636766.1:ENST00000637100.1:ENST00000569430.7:ENST00000359984.12:ENST00000360019.8:ENST00000636147.2:ENST00000563874.5:ENST00000357857.14:ENST00000333496.14:ENST00000561689.6:ENST00000395653.9:ENST00000357806.11:ENST00000568076.6:ENST00000637184.1:ENST00000636839.1:ENST00000637107.1:ENST00000636351.1:ENST00000636977.1:ENST00000637578.1:ENST00000635958.1:ENST00000567963.6:ENST00000568452.6:ENST00000637871.1:ENST00000565316.6:ENST00000628023.3:ENST00000636228.1:ENST00000635861.1:ENST00000636172.1:ENST00000355477.10:ENST00000565140.5:ENST00000566057.5:ENST00000569030.5:ENST00000637699.1:ENST00000568422.6:ENST00000636853.1:ENST00000566824.6:ENST00000635973.1:ENST00000568497.6:ENST00000564574.5:ENST00000568472.6:ENST00000566083.6:ENST00000565778.6:ENST00000565047.1:ENST00000568558.6:ENST00000565688.5:ENST00000567495.6:ENST00000561505.2:ENST00000637985.1:ENST00000568443.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr20	38128654	38128752	17962917	0	-	0.55102	(0.53,0.59]	chr20	1522305	14	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr4	120066796	120066858	5621539	0	-	0.564516	(0.53,0.59]	chr4	448106	2	UTR5	UTR5:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000511295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chrX	315399	315499	18924682	0	-	0.57	(0.53,0.59]	chrX	1612795	1	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chrX	65524193	65524262	19096252	0	-	0.565217	(0.53,0.59]	chrX	1624521	3	CDS	CDS:UTR3:EXON_MRNA	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000677834.1:ENST00000374807.9:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1:ENST00000676986.1:ENST00000678823.1:ENST00000678570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.515	3.166695	3.81839	0.0292633	0.0184435	0.129773	0.0945306
chr17	47670766	47670832	16251853	0	+	0.393939	(0.39,0.42]	chr17	1316708	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	58	2	2.87327	3.16655	3.45983	8.68166e-5	6.4732e-5	0.00177086	0.00126536
chr2	171966842	171966895	2208555	0	+	0.45283	(0.42,0.455]	chr2	202150	1	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	1.93033	3.166545	4.40276	0.0505055	0.0017618	0.181202	0.0180053
chrX	48913845	48913940	19063607	0	-	0.463158	(0.455,0.49]	chrX	1620588	8	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	2.71913	3.1665	3.61387	0.00103266	2.88949e-5	0.011478	7.23839e-4
chr19	3977995	3978083	17430191	0	-	0.659091	(0.59,1]	chr19	1454695	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	25	471	2	2.39381	3.16645	3.93909	1.34769e-4	6.87629e-9	0.00249842	5.60648e-7
chr1	109326991	109327075	1219609	0	-	0.488095	(0.455,0.49]	chr1	118974	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000466471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	2.9967	3.166325	3.33595	0.00650423	2.70224e-5	0.0454205	6.22285e-4
chr18	9536728	9536827	16753988	0	+	0.414141	(0.39,0.42]	chr18	1381612	9	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	3.14527	3.166325	3.18738	5.33048e-4	7.15306e-5	0.00742114	0.00137393
chr17	59202726	59202825	16292931	0	+	0.444444	(0.42,0.455]	chr17	1321372	12	UTR3	UTR3:EXON_MRNA:INTRON	PRR11:CTD-2510F5.6	ENSG00000068489.13:ENSG00000265303.1	ENST00000262293.9:ENST00000578542.5:ENST00000580177.5:ENST00000614081.1:ENST00000577660.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	36	2	1.53201	3.1663249999999996	4.80064	0.0210878	3.0479e-4	0.102003	0.00472028
chr22	30345104	30345190	18469780	0	-	0.511628	(0.49,0.53]	chr22	1575882	3	CDS	CDS:EXON_MRNA:INTRON	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000447376.1:ENST00000471037.1:ENST00000471342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.38097	3.1662850000000002	3.9516	0.0425419	6.96459e-5	0.167547	0.0013446
chr6	166329506	166329589	8077649	0	-	0.518072	(0.49,0.53]	chr6	616675	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5:ENST00000488773.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.38097	3.1662850000000002	3.9516	0.0425419	6.96459e-5	0.167547	0.0013446
chr9	98087079	98087176	10759996	0	-	0.515464	(0.49,0.53]	chr9	814726	29	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1:ENST00000341469.7:ENST00000342043.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.38097	3.1662850000000002	3.9516	0.0425419	6.96459e-5	0.167547	0.0013446
chr2	110641119	110641205	2837941	0	-	0.383721	(0.36,0.39]	chr2	253284	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	3.03944	3.1661200000000003	3.2928	2.65442e-4	5.52787e-5	0.004287	0.00112179
chr1	12208220	12208320	47311	0	+	0.55	(0.53,0.59]	chr1	6130	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TNFRSF1B	ENSG00000028137.19	ENST00000376259.7:ENST00000492361.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	3.11275	3.16608	3.21941	0.00407571	0.00266171	0.032143	0.0240332
chr3	10315320	10315378	4032441	0	-	0.551724	(0.53,0.59]	chr3	338604	1	CDS	CDS:EXON_MRNA	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000431352.1:ENST00000397102.5:ENST00000397101.5:ENST00000397099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	3.11275	3.16608	3.21941	0.00407571	0.00266171	0.032143	0.0240332
chr17	44014852	44014952	16555954	0	-	0.58	(0.53,0.59]	chr17	1358833	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8:ENST00000587529.1:ENST00000585950.5:ENST00000592127.5:ENST00000590905.1:ENST00000586174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.1234	3.1660700000000004	3.20874	0.00390623	0.00278422	0.0322851	0.0241009
chr9	92047171	92047268	10735788	0	-	0.525773	(0.49,0.53]	chr9	812091	1	CDS	CDS:UTR3:EXON_MRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	3.11892	3.166045	3.21317	0.00398244	3.08783e-4	0.0322851	0.00445935
chr21	33552712	33552811	18101184	0	+	0.535354	(0.53,0.59]	chr21	1534527	21	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	57	2	2.29749	3.16601	4.03453	0.00181945	4.6e-5	0.0183913	9.56296e-4
chr3	119226883	119226962	4398794	0	-	0.556962	(0.53,0.59]	chr3	364645	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	B4GALT4	ENSG00000121578.13	ENST00000483209.5:ENST00000467604.5:ENST00000359213.7:ENST00000393765.7:ENST00000471675.1:ENST00000480814.5:ENST00000460321.5:ENST00000491906.5:ENST00000475803.5:ENST00000479150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.71318	3.16587	3.61856	0.0303021	0.00340745	0.129773	0.0283456
chr10	72367518	72367615	11565389	0	-	0.474227	(0.455,0.49]	chr10	880282	3	UTR3	UTR3:EXON_MRNA	MICU1	ENSG00000107745.19	ENST00000398761.8:ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.52734	3.16547	3.8036	0.00792433	1.59194e-4	0.0523592	0.00263091
chr12	53382676	53382770	12885891	0	+	0.489362	(0.455,0.49]	chr12	1002309	7	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.52734	3.16547	3.8036	0.00792433	1.59194e-4	0.0523592	0.00263091
chr7	128074595	128074690	8519191	0	+	0.589474	(0.53,0.59]	chr7	649782	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	2.9831	3.165225	3.34735	1.46925e-4	3.1905e-5	0.0026854	7.08895e-4
chr9	131144362	131144446	10495804	0	+	0.52381	(0.49,0.53]	chr9	793240	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding	28	240	2	2.73192	3.1652	3.59848	1.24994e-6	8.87943e-9	4.83781e-5	7.64184e-7
chr18	31538826	31538902	16809083	0	+	0.513158	(0.49,0.53]	chr18	1386462	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.90042	3.16498	3.42954	0.00105489	3.88511e-4	0.0123035	0.00534839
chr21	29344100	29344198	18090057	0	+	0.357143	(0.33,0.36]	chr21	1533713	14	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.86073	3.164905	3.46908	0.0105608	0.00114872	0.0644466	0.0130528
chr12	122620478	122620566	13124730	0	+	0.488636	(0.455,0.49]	chr12	1025287	1	CDS	CDS:UTR5:EXON_MRNA	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000541427.1:ENST00000534995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.96925	3.1648750000000003	3.3605	0.00698725	0.00147278	0.0473262	0.0157578
chr16	30724172	30724270	15631067	0	+	0.632653	(0.59,1]	chr16	1240525	7	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	86	2	2.08709	3.164865	4.24264	0.00890645	3.77126e-5	0.0565003	9.05627e-4
chr16	15700770	15700863	15566428	0	+	0.516129	(0.49,0.53]	chr16	1232630	4	INTRON	INTRON	NDE1	ENSG00000072864.16	ENST00000396355.5:ENST00000674888.1:ENST00000675171.1:ENST00000675951.1:ENST00000674900.1:ENST00000674588.1:ENST00000674538.1:ENST00000396354.6:ENST00000675926.1:ENST00000674995.1:ENST00000674554.1:ENST00000674581.1:ENST00000577101.6:ENST00000572756.6:ENST00000573694.5:ENST00000572967.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.99849	3.16474	3.33099	0.00630123	1.59567e-4	0.0445415	0.00263091
chrX	53379804	53379903	19076620	0	-	0.585859	(0.53,0.59]	chrX	1622486	58	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.77921	3.1646099999999997	3.55001	0.0132865	6.11776e-4	0.0740932	0.00818575
chr17	57507146	57507245	16285304	0	+	0.474747	(0.455,0.49]	chr17	1320794	195	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	3.12843	3.16456	3.20069	0.00392855	0.00285821	0.0322851	0.0245841
chr19	54188432	54188508	17627815	0	-	0.473684	(0.455,0.49]	chr19	1488054	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000391754.5:ENST00000414665.5:ENST00000453320.1:ENST00000474910.5:ENST00000491216.5:ENST00000495968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	3.12843	3.16456	3.20069	0.00392855	0.00285821	0.0322851	0.0245841
chr20	53576503	53576600	18015906	0	-	0.402062	(0.39,0.42]	chr20	1526885	9	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.18025	3.164555	4.14886	0.00587938	0.00415881	0.0424857	0.0325842
chr12	19456524	19456617	13233332	0	-	0.526882	(0.49,0.53]	chr12	1037586	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P4	ENSG00000245205.3	ENST00000359165.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	27	2	2.72252	3.164525	3.60653	0.0161474	4.50981e-4	0.0860154	0.00605268
chr19	23597340	23597424	17276122	0	+	0.5	(0.49,0.53]	chr19	1427737	1	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-359H18.2:RPS27P29	ENSG00000268455.1:ENSG00000240231.1	ENST00000600110.1:ENST00000463110.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	2	27	2	2.72252	3.164525	3.60653	0.0161474	4.50981e-4	0.0860154	0.00605268
chr16	68122175	68122269	15714214	0	+	0.414894	(0.39,0.42]	chr16	1250981	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-67A1.2:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	6	58	2	2.95786	3.16447	3.37108	0.00138212	5.21879e-6	0.0149186	1.60277e-4
chr16	85590170	85590270	15797223	0	+	0.47	(0.455,0.49]	chr16	1256993	335	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.83859	3.16446	3.49033	0.00215336	7.92678e-4	0.0208395	0.00933379
chr20	38952126	38952224	17787111	0	+	0.459184	(0.455,0.49]	chr20	1503189	7	CDS	CDS:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.83859	3.16446	3.49033	0.00215336	7.92678e-4	0.0208395	0.00933379
chr5	177332085	177332185	6991041	0	-	0.65	(0.59,1]	chr5	534717	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000504071.1:ENST00000515209.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	117	2	3.15632	3.164325	3.17233	6.43048e-4	4.78944e-5	0.00850474	9.91058e-4
chr1	12005710	12005783	45807	0	+	0.561644	(0.53,0.59]	chr1	5911	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr1	109270425	109270512	398364	0	+	0.563218	(0.53,0.59]	chr1	38698	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CELSR2	ENSG00000143126.8	ENST00000271332.4:ENST00000489018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr1	109271599	109271660	398380	0	+	0.557377	(0.53,0.59]	chr1	38708	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CELSR2	ENSG00000143126.8	ENST00000271332.4:ENST00000489018.1:ENST00000498157.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr11	61356613	61356713	12404450	0	-	0.56	(0.53,0.59]	chr11	960335	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000542361.5:ENST00000537364.5:ENST00000535177.1:ENST00000539128.5:ENST00000538263.5:ENST00000542411.5:ENST00000536687.1:ENST00000545361.5:ENST00000537680.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr14	74893347	74893424	14402336	0	+	0.558442	(0.53,0.59]	chr14	1125577	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DLST	ENSG00000119689.15	ENST00000554612.5:ENST00000334220.9:ENST00000238671.11:ENST00000555190.5:ENST00000555089.5:ENST00000554806.5:ENST00000555988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr16	54114030	54114129	15672634	0	+	0.565657	(0.53,0.59]	chr16	1245636	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FTO	ENSG00000140718.21	ENST00000471389.6:ENST00000637969.1:ENST00000637845.1:ENST00000612285.2:ENST00000463855.1:ENST00000268349.7:ENST00000636091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr19	6211464	6211562	17440792	0	-	0.571429	(0.53,0.59]	chr19	1456576	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MLLT1	ENSG00000130382.9	ENST00000252674.9:ENST00000587473.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr19	49858600	49858653	17373226	0	+	0.566038	(0.53,0.59]	chr19	1443876	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTOV1	ENSG00000104960.15	ENST00000601612.5:ENST00000600603.5:ENST00000601638.5:ENST00000594165.5:ENST00000598325.5:ENST00000391842.5:ENST00000599732.5:ENST00000601675.5:ENST00000597793.5:ENST00000596424.1:ENST00000601093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr21	33421610	33421685	18100499	0	+	0.533333	(0.53,0.59]	chr21	1534479	1	CDS	CDS:UTR3:EXON_MRNA	IFNGR2	ENSG00000159128.15	ENST00000290219.11:ENST00000439213.5:ENST00000381995.5:ENST00000545369.2:ENST00000405436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr21	45500637	45500736	18145825	0	+	0.565657	(0.53,0.59]	chr21	1539824	26	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr22	36265737	36265835	18360627	0	+	0.571429	(0.53,0.59]	chr22	1561192	7	CDS	CDS:EXON_MRNA	APOL1	ENSG00000100342.21	ENST00000422706.5:ENST00000426053.5:ENST00000319136.8:ENST00000397278.8:ENST00000397279.8	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr8	41702051	41702144	9806773	0	-	0.548387	(0.53,0.59]	chr8	741648	1	CDS	CDS:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000520299.5	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr9	37199941	37200041	10253643	0	+	0.55	(0.53,0.59]	chr9	771611	130	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr9	37432072	37432138	10255343	0	+	0.560606	(0.53,0.59]	chr9	771700	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GRHPR	ENSG00000137106.18	ENST00000318158.11:ENST00000460882.5:ENST00000491488.5:ENST00000607784.1:ENST00000497693.1:ENST00000480596.5:ENST00000494290.1:ENST00000482603.1:ENST00000512404.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chrX	48824229	48824294	18693302	0	+	0.553846	(0.53,0.59]	chrX	1594525	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000488543.1:ENST00000430858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	16	2	2.50447	3.16427	3.82407	0.0301162	0.0179666	0.130016	0.0918323
chr6	63580759	63580856	7205081	0	+	0.309278	(0.29,0.33]	chr6	556541	7	UTR3	UTR3:EXON_MRNA	PTP4A1:RP5-1148A21.4	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	76	2	2.67192	3.16426	3.6566	2.43559e-4	1.41813e-7	0.00399705	7.55472e-6
chr6	159981288	159981388	7527662	0	+	0.49	(0.455,0.49]	chr6	574701	115	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.85172	3.164215	3.47671	0.0368644	0.010864	0.145024	0.0643837
chr7	100431238	100431331	8427132	0	+	0.483871	(0.455,0.49]	chr7	643004	13	CDS	CDS:UTR5:EXON_MRNA	MEPCE	ENSG00000146834.14	ENST00000497759.1:ENST00000414441.5:ENST00000479201.1:ENST00000310512.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.85172	3.164215	3.47671	0.0368644	0.010864	0.145024	0.0643837
chr8	37741771	37741818	9289900	0	+	0.489362	(0.455,0.49]	chr8	710331	1	CDS	CDS:EXON_MRNA:INTRON	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000523887.5:ENST00000519638.3:ENST00000648919.1:ENST00000521993.3:ENST00000518586.5:ENST00000335171.10:ENST00000521644.5:ENST00000523107.5:ENST00000647813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.85172	3.164215	3.47671	0.0368644	0.010864	0.145024	0.0643837
chr1	36286637	36286728	141539	0	+	0.527473	(0.49,0.53]	chr1	17556	4	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	69	2	2.95928	3.1641950000000003	3.36911	9.07604e-5	2.16178e-5	0.00167715	5.71712e-4
chr8	38139346	38139437	9291785	0	+	0.340659	(0.33,0.36]	chr8	710654	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	40	2	2.60452	3.164085	3.72365	3.73031e-4	3.19155e-4	0.00519288	0.00491578
chr1	38839068	38839164	951268	0	-	0.375	(0.36,0.39]	chr1	100260	10	UTR3	UTR3:EXON_MRNA	RRAGC	ENSG00000116954.8	ENST00000373001.4	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.99569	3.16405	3.33241	0.00193631	7.37624e-5	0.0192272	0.00141413
chr11	3827269	3827367	12238979	0	-	0.571429	(0.53,0.59]	chr11	945691	4	UTR3	UTR3:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.45052	3.16391	3.8773	0.00355092	5.13471e-6	0.0300049	1.58468e-4
chr3	43561310	43561402	4145499	0	-	0.456522	(0.455,0.49]	chr3	346445	2	CDS	CDS:EXON_MRNA	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000427171.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.63872	3.163875	3.68903	0.00510378	1.71879e-5	0.0390492	4.32994e-4
chr18	31542768	31542852	16809126	0	+	0.47619	(0.455,0.49]	chr18	1386474	4	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.04847	3.163765	4.27906	0.0192065	8.82347e-6	0.0943643	2.48294e-4
chr6	87663002	87663073	7271049	0	+	0.549296	(0.53,0.59]	chr6	560543	1	CDS	CDS:EXON_MRNA	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	1.65775	3.163555	4.66936	0.0573191	0.00103174	0.196623	0.0121443
chr13	30428355	30428455	13668501	0	+	0.4	(0.39,0.42]	chr13	1076919	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2L5	ENSG00000236444.5	ENST00000638137.1:ENST00000635918.2:ENST00000436446.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.49701	3.16337	3.82973	0.0339607	1.3728e-4	0.141431	0.00232973
chr12	14502633	14502732	12745543	0	+	0.252525	[0,0.29]	chr12	990817	47	UTR3	UTR3:EXON_MRNA	ATF7IP	ENSG00000171681.13	ENST00000261168.9:ENST00000536444.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.82443	3.163335	3.50224	0.0180803	7.95529e-4	0.0920398	0.009356
chr4	99881300	99881399	5550914	0	-	0.272727	[0,0.29]	chr4	443610	31	UTR3	UTR3:EXON_MRNA	LAMTOR3	ENSG00000109270.13	ENST00000499666.7:ENST00000226522.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.82443	3.163335	3.50224	0.0180803	7.95529e-4	0.0920398	0.009356
chr11	44618639	44618723	11928250	0	+	0.654762	(0.59,1]	chr11	911710	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD82	ENSG00000085117.12	ENST00000342935.7:ENST00000529277.5:ENST00000227155.9:ENST00000525898.5:ENST00000530931.1:ENST00000524750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	24	2	2.61074	3.1632	3.71566	0.0487443	0.025486	0.175495	0.117089
chrX	132075249	132075348	18860646	0	+	0.373737	(0.36,0.39]	chrX	1607245	12	UTR3	UTR3:EXON_MRNA	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000394335.6	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.85874	3.16294	4.46714	0.0415243	0.00155822	0.164804	0.0156889
chr22	19175580	19175671	18431148	0	-	0.659341	(0.59,1]	chr22	1570486	1	UTR3	UTR3:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	2.88332	3.1628499999999997	3.44238	0.00158239	5.9453e-4	0.0167793	0.00746384
chr15	75322393	75322493	15376654	0	-	0.48	(0.455,0.49]	chr15	1215649	11	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	ANP32BP1	ENSG00000259790.1	ENST00000564205.1:ENST00000568553.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	48	2	1.68956	3.162815	4.63607	0.0381365	6.94376e-7	0.155455	2.92826e-5
chr6	26198950	26199046	7647223	0	-	0.635417	(0.59,1]	chr6	582553	1	CDS	CDS:EXON_MRNA	RP1-34B20.21:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	150	2	2.91561	3.162815	3.41002	1.09901e-4	3.61752e-5	0.00211239	7.90632e-4
chr5	134927933	134928031	6846873	0	-	0.316327	(0.29,0.33]	chr5	523926	14	EXON_PSEUDO	EXON_PSEUDO	MTND4P12:MTND4LP30	ENSG00000247627.2:ENSG00000198868.3	ENST00000498999.2:ENST00000454092.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	30	2	2.67277	3.162515	3.65226	0.0255386	2.31878e-5	0.117089	5.49766e-4
chr1	182384009	182384108	1401216	0	-	0.525253	(0.49,0.53]	chr1	141690	61	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	334	2	3.14393	3.1623799999999997	3.18083	2.95041e-8	1.96603e-8	2.15325e-6	1.38708e-6
chrX	142203887	142203987	19261787	0	-	0.55	(0.53,0.59]	chrX	1636102	1	CDS_START	CDS_START:CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.94125	3.16236	3.38347	0.00132446	0.0012261800000000001	0.0138834	0.0135648
chr4	17625264	17625361	4734399	0	+	0.412371	(0.39,0.42]	chr4	392802	16	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	64	2	2.55985	3.162235	3.76462	0.00115425	1.17915e-6	0.0130851	4.5939e-5
chr1	21889980	21890060	891392	0	-	0.65	(0.59,1]	chr1	92599	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000412328.5:ENST00000374673.4:ENST00000439717.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	3.0542	3.162115	3.27003	0.00663549	3.45884e-4	0.0456243	0.00486309
chr11	764845	764928	11758810	0	+	0.60241	(0.59,1]	chr11	898445	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TALDO1	ENSG00000177156.11	ENST00000528097.5:ENST00000319006.8:ENST00000530666.1:ENST00000532202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	3.0542	3.162115	3.27003	0.00663549	3.45884e-4	0.0456243	0.00486309
chr5	256333	256420	5848245	0	+	0.54023	(0.53,0.59]	chr5	459603	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000511810.5:ENST00000515815.5:ENST00000509082.1:ENST00000503674.5:ENST00000509564.1:ENST00000507522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	2.92962	3.1618899999999996	3.39416	0.0012954	0.00126006	0.013837	0.0136936
chr2	222914122	222914222	2406048	0	+	0.38	(0.36,0.39]	chr2	216565	25	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	1.89872	3.1618749999999998	4.42503	0.056542	0.00133228	0.19417	0.0144372
chr14	22830186	22830248	14174810	0	+	0.677419	(0.59,1]	chr14	1110347	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MRPL52	ENSG00000172590.18	ENST00000557543.5:ENST00000355151.9:ENST00000397496.7:ENST00000556654.5:ENST00000553482.5:ENST00000556214.1:ENST00000555345.5:ENST00000432849.7:ENST00000553711.5:ENST00000556465.5:ENST00000397505.2:ENST00000557221.1:ENST00000311892.10:ENST00000556840.5:ENST00000461594.5:ENST00000555536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	32	2	2.17889	3.16186	4.14483	0.025085	0.0183207	0.116848	0.0945306
chr1	37493569	37493668	946789	0	-	0.30303	(0.29,0.33]	chr1	99426	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	99	2	3.04604	3.161815	3.27759	1.32354e-6	1.14075e-6	5.07761e-5	4.91686e-5
chr19	3976384	3976468	17430172	0	-	0.595238	(0.59,1]	chr19	1454683	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	75	1332	2	3.14787	3.161735	3.1756	2.83842e-7	8.25349e-8	1.53156e-5	4.74225e-6
chr5	40826547	40826646	6552878	0	-	0.50505	(0.49,0.53]	chr5	507727	14	UTR3	UTR3:EXON_MRNA	RPL37	ENSG00000145592.14	ENST00000274242.10	protein_coding	protein_coding	protein_coding	protein_coding	8	86	2	2.81492	3.16167	3.50842	6.31846e-4	5.63197e-7	0.00837621	2.45152e-5
chr12	111450255	111450353	13092100	0	+	0.418367	(0.39,0.42]	chr12	1021116	21	UTR3	UTR3:EXON_MRNA	SH2B3	ENSG00000111252.11	ENST00000341259.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.99507	3.1615900000000003	3.32811	0.00637824	0.00182819	0.0449937	0.0183913
chr17	82520707	82520807	16383760	0	+	0.41	(0.39,0.42]	chr17	1332690	4	SS5_PROX	SS5_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.38313	3.1615450000000003	3.93996	0.0128066	0.00841622	0.0725185	0.054565
chr20	492308	492364	17871545	0	-	0.410714	(0.39,0.42]	chr20	1511973	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.38313	3.1615450000000003	3.93996	0.0128066	0.00841622	0.0725185	0.054565
chr4	139344185	139344262	5127998	0	+	0.402597	(0.39,0.42]	chr4	415161	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000480277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.38313	3.1615450000000003	3.93996	0.0128066	0.00841622	0.0725185	0.054565
chr7	152094227	152094327	8620308	0	+	0.4	(0.39,0.42]	chr7	658833	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5:ENST00000434507.5:ENST00000415421.5:ENST00000422997.6:ENST00000419245.5:ENST00000447796.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.38313	3.1615450000000003	3.93996	0.0128066	0.00841622	0.0725185	0.054565
chr14	34568688	34568776	14577873	0	-	0.545455	(0.53,0.59]	chr14	1142037	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SNX6:RPS19P3	ENSG00000129515.20:ENSG00000240463.1	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000480487.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	2	32	2	2.515	3.16153	3.80806	0.0292633	1.65022e-4	0.129773	0.00269147
chr2	219250351	219250451	3191518	0	-	0.54	(0.53,0.59]	chr2	280987	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.515	3.16153	3.80806	0.0292633	1.65022e-4	0.129773	0.00269147
chr9	136207329	136207429	10888804	0	-	0.45	(0.42,0.455]	chr9	826966	11	UTR3	UTR3:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.72071	3.1614250000000004	4.60214	0.0499984	7.96714e-7	0.179758	3.65339e-5
chr1	19239230	19239302	877353	0	-	0.583333	(0.53,0.59]	chr1	90505	1	CDS	CDS:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.56665	3.1614	3.75615	0.00209536	2.16536e-4	0.0196588	0.00361336
chr1	52402128	52402223	1018994	0	-	0.473684	(0.455,0.49]	chr1	105644	1	CDS_START	CDS_START:CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.45014	3.161235	3.87233	0.00397453	1.08465e-4	0.0322851	0.00193256
chr2	61478630	61478724	2690343	0	-	0.287234	[0,0.29]	chr2	240316	11	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	2.79062	3.16087	3.53112	0.00169679	5.30932e-5	0.01759	0.00108035
chr18	26390110	26390208	16797139	0	+	0.357143	(0.33,0.36]	chr18	1385786	2	UTR3	UTR3:EXON_MRNA	TAF4B	ENSG00000141384.13	ENST00000269142.10:ENST00000578121.5:ENST00000418698.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.28465	3.160855	4.03706	0.0188404	5.18043e-5	0.0958835	0.00115752
chr7	121266706	121266757	8496532	0	+	0.490196	(0.49,0.53]	chr7	648433	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.49797	3.160635	3.8233	0.00843736	1.44192e-4	0.0546021	0.00242438
chr5	41918960	41919059	5952046	0	+	0.252525	[0,0.29]	chr5	466512	3	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	3.0735	3.160625	3.24775	0.00785095	2.91652e-4	0.0520241	0.00428484
chrX	151406721	151406819	18909807	0	+	0.265306	[0,0.29]	chrX	1610139	18	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	3.0735	3.160625	3.24775	0.00785095	2.91652e-4	0.0520241	0.00428484
chr12	57059978	57060059	13353773	0	-	0.481481	(0.455,0.49]	chr12	1052213	1	CDS	CDS:UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	2.58479	3.1603399999999997	3.73589	0.00200187	2.30579e-4	0.0189555	0.00382267
chr5	55424861	55424951	5974180	0	+	0.211111	[0,0.29]	chr5	468407	2	UTR3	UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000508716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	2.84979	3.160335	3.47088	0.0015572	6.05262e-4	0.0165415	0.00756349
chr13	48261224	48261323	13724924	0	+	0.30303	(0.29,0.33]	chr13	1081346	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000650237.1:ENST00000463839.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	2.45373	3.16012	3.86651	0.0156405	0.0112245	0.084273700000000007	0.0665375
chr6	26199143	26199243	7647225	0	-	0.67	(0.59,1]	chr6	582554	1	CDS_START	CDS_START:CDS:EXON_MRNA	RP1-34B20.21:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	175	2	3.10719	3.1601150000000002	3.21304	1.92106e-4	1.03819e-5	0.00305521	3.10912e-4
chr2	26137259	26137356	1685723	0	+	0.43299	(0.42,0.455]	chr2	164739	24	UTR3	UTR3:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	2.85599	3.1599199999999996	3.46385	7.82573e-5	7.26611e-5	0.00163426	0.00139386
chr20	63890793	63890887	17866833	0	+	0.595745	(0.59,1]	chr20	1511295	9	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	1.87297	3.15984	4.44671	0.0308113	0.00931497	0.130016	0.0586162
chr2	43974684	43974758	2623845	0	-	0.432432	(0.42,0.455]	chr2	236264	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000682999.1:ENST00000682637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	43	2	2.70611	3.15967	3.61323	0.00397496	2.83914e-5	0.0322851	6.46853e-4
chr21	44851580	44851627	18277428	0	-	0.340426	(0.33,0.36]	chr21	1550251	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.63456	3.15967	3.68478	0.00707461	2.19298e-6	0.0478528	7.73912e-5
chr17	44852408	44852472	16559918	0	-	0.5625	(0.53,0.59]	chr17	1359691	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	3.0099	3.159665	3.30943	0.00600486	0.0018255	0.042887	0.0183913
chr12	6938579	6938679	12715659	0	+	0.58	(0.53,0.59]	chr12	987312	2	CDS	CDS:EXON_MRNA	ATN1	ENSG00000111676.15	ENST00000356654.8:ENST00000396684.3:ENST00000541029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	3.02054	3.1596450000000003	3.29875	0.00577011	0.00191422	0.0426551	0.018324
chrX	77969349	77969443	19129673	0	-	0.574468	(0.53,0.59]	chrX	1626918	5	CDS	CDS:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	3.02054	3.1596450000000003	3.29875	0.00577011	0.00191422	0.0426551	0.018324
chr9	33917137	33917237	10237976	0	+	0.44	(0.42,0.455]	chr9	769834	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.47379	3.159585	3.84538	0.00996858	1.2691e-4	0.0621728	0.00219756
chr3	67375463	67375556	4255650	0	-	0.397849	(0.39,0.42]	chr3	357238	9	UTR3	UTR3:EXON_MRNA:INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.48908	3.159405	3.82973	0.0101318	1.3728e-4	0.0626311	0.00232973
chr14	30884552	30884604	14201244	0	+	0.288462	[0,0.29]	chr14	1112901	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000553772.5:ENST00000475087.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000557065.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	2.61628	3.1593999999999998	3.70252	0.0101434	2.87026e-4	0.0626311	0.00422471
chr3	167684031	167684123	4564226	0	-	0.26087	[0,0.29]	chr3	377991	9	UTR3	UTR3:EXON_MRNA	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.61628	3.1593999999999998	3.70252	0.0101434	2.87026e-4	0.0626311	0.00422471
chr6	158608332	158608397	7521849	0	+	0.569231	(0.53,0.59]	chr6	573972	1	CDS	CDS:EXON_MRNA	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	2.84458	3.1593850000000003	3.47419	8.75273e-4	5.21436e-4	0.0106963	0.00674101
chr7	105582068	105582162	8974671	0	-	0.361702	(0.36,0.39]	chr7	686898	5	INTRON	INTRON	EFCAB10	ENSG00000185055.11	ENST00000469099.5:ENST00000490493.1	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.73394	3.15935	3.58476	0.00131831	5.01956e-4	0.0143836	0.00653592
chr3	152432784	152432852	3818195	0	+	0.544118	(0.53,0.59]	chr3	325660	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	2.63871	3.15932	3.67993	0.00148857	3.22778e-4	0.0159153	0.0046122
chr1	58630840	58630938	1055014	0	-	0.55102	(0.53,0.59]	chr1	108133	1	EXON_PSEUDO	EXON_PSEUDO	RP4-592A1.2	ENSG00000185839.3	ENST00000427762.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	21	2	2.16037	3.15921	4.15805	0.0254312	0.00680952	0.117089	0.0468196
chr12	57674761	57674859	12904051	0	+	0.530612	(0.53,0.59]	chr12	1005845	2	EXON_PSEUDO	EXON_PSEUDO	RPL13AP23	ENSG00000242990.2	ENST00000480739.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	21	2	2.16037	3.15921	4.15805	0.0254312	0.00680952	0.117089	0.0468196
chr11	17372167	17372249	11827948	0	+	0.402439	(0.39,0.42]	chr11	905451	3	CDS	CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.86895	3.15909	3.44923	0.00177945	0.00105208	0.0172974	0.0123035
chr5	142000961	142001058	6878176	0	-	0.412371	(0.39,0.42]	chr5	526950	4	UTR3	UTR3:EXON_MRNA:INTRON	GNPDA1	ENSG00000113552.16	ENST00000513454.5:ENST00000311337.11:ENST00000500692.6:ENST00000503794.5:ENST00000508177.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.86895	3.15909	3.44923	0.00177945	0.00105208	0.0172974	0.0123035
chr11	6612865	6612964	12249904	0	-	0.515152	(0.49,0.53]	chr11	946834	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.99044	3.159065	4.32769	0.0435903	6.54988e-6	0.170594	1.94116e-4
chr1	28738258	28738338	118360	0	+	0.4	(0.39,0.42]	chr1	14524	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	1.98676	3.15903	4.3313	0.0439902	0.00209984	0.163596	0.0204266
chr1	214657027	214657122	710604	0	+	0.4	(0.39,0.42]	chr1	71951	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CENPF	ENSG00000117724.13	ENST00000366955.8:ENST00000469862.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	1.98676	3.15903	4.3313	0.0439902	0.00209984	0.163596	0.0204266
chr16	46956929	46957028	15928731	0	-	0.414141	(0.39,0.42]	chr16	1277626	17	UTR3	UTR3:EXON_MRNA	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	1.98676	3.15903	4.3313	0.0439902	0.00209984	0.163596	0.0204266
chr17	48927902	48927998	16256025	0	+	0.416667	(0.39,0.42]	chr17	1317570	9	UTR3	UTR3:EXON_MRNA	UBE2Z	ENSG00000159202.18	ENST00000360943.10:ENST00000513342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	1.98676	3.15903	4.3313	0.0439902	0.00209984	0.163596	0.0204266
chr4	73090666	73090762	5466117	0	-	0.4375	(0.42,0.455]	chr4	437754	1	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.11744	3.1589650000000002	4.20049	0.00497755	1.49765e-5	0.0381953	3.83096e-4
chr7	44579081	44579180	8800223	0	-	0.525253	(0.49,0.53]	chr7	671335	13	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.46958	3.15895	3.84832	0.00344146	5.8066e-6	0.0292838	1.75335e-4
chr1	89714190	89714289	346891	0	+	0.414141	(0.39,0.42]	chr1	34108	16	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr13	49722476	49722563	14020326	0	-	0.402299	(0.39,0.42]	chr13	1099682	1	CDS	CDS:EXON_MRNA	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr17	59811669	59811727	16296690	0	+	0.396552	(0.39,0.42]	chr17	1321840	1	CDS	CDS:UTR3:EXON_MRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr18	13760861	13760959	16770191	0	+	0.418367	(0.39,0.42]	chr18	1383302	10	UTR3	UTR3:EXON_MRNA:INTRON	RNMT	ENSG00000101654.18	ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr2	189572845	189572903	3082517	0	-	0.413793	(0.39,0.42]	chr2	272335	1	CDS	CDS:EXON_MRNA	SLC40A1	ENSG00000138449.11	ENST00000261024.7:ENST00000427241.5:ENST00000479598.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr6	4050868	4050966	7018292	0	+	0.418367	(0.39,0.42]	chr6	538209	6	INTRON	INTRON	PRPF4B	ENSG00000112739.17	ENST00000480058.5:ENST00000337659.11:ENST00000481109.5:ENST00000463634.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr7	105117641	105117739	8970792	0	-	0.418367	(0.39,0.42]	chr7	686639	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.37759	3.1587750000000003	3.93996	0.0428865	0.00841622	0.161091	0.054565
chr10	13210010	13210110	10933895	0	+	0.32	(0.29,0.33]	chr10	832340	8	UTR3	UTR3:EXON_MRNA	MCM10	ENSG00000065328.17	ENST00000378714.8:ENST00000378694.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.24226	3.15848	4.0747	0.0306054	0.00577533	0.130226	0.0417823
chr2	20322403	20322501	2541385	0	-	0.316327	(0.29,0.33]	chr2	228596	34	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	2.24226	3.15848	4.0747	0.0306054	0.00577533	0.130226	0.0417823
chr8	43019391	43019490	9307507	0	+	0.30303	(0.29,0.33]	chr8	712746	10	UTR3	UTR3:EXON_MRNA:INTRON	HOOK3:RP11-598P20.5	ENSG00000168172.9:ENSG00000254673.1	ENST00000307602.9:ENST00000533338.1:ENST00000534420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.24226	3.15848	4.0747	0.0306054	0.00577533	0.130226	0.0417823
chr1	25272647	25272695	103464	0	+	0.5	(0.49,0.53]	chr1	12126	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RHD	ENSG00000187010.21	ENST00000564398.5:ENST00000648012.1:ENST00000622561.4:ENST00000454452.6:ENST00000328664.9:ENST00000342055.9:ENST00000357542.8:ENST00000417538.6:ENST00000423810.6:ENST00000568195.5:ENST00000423253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.8671	3.1583050000000004	3.44951	0.0405223	0.0100489	0.153343	0.0623334
chr2	69325892	69325990	2718318	0	-	0.346939	(0.33,0.36]	chr2	241994	63	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.57153	3.1582749999999997	3.74502	0.00330025	2.19782e-4	0.028478	0.00339463
chr17	40019292	40019370	16538028	0	-	0.525641	(0.49,0.53]	chr17	1354339	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MED24	ENSG00000008838.20	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000614384.4:ENST00000491466.5:ENST00000535508.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.56183	3.158215	3.7546	0.0261296	2.09468e-4	0.118976	0.00327655
chr2	136200006	136200105	2899178	0	-	0.414141	(0.39,0.42]	chr2	258697	10	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP2	ENSG00000227347.1	ENST00000447355.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	44	2	2.92895	3.158165	3.38738	3.36969e-4	1.35138e-4	0.00475537	0.0025017
chr15	41281187	41281287	14885243	0	+	0.44	(0.42,0.455]	chr15	1169243	19	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.07474	3.158035	4.24133	0.0338882	0.00326918	0.139841	0.0282494
chr22	27852056	27852154	18455903	0	-	0.44898	(0.42,0.455]	chr22	1574551	5	UTR3	UTR3:EXON_MRNA	PITPNB	ENSG00000180957.18	ENST00000335272.10:ENST00000455418.7:ENST00000320996.14	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.07474	3.158035	4.24133	0.0338882	0.00326918	0.139841	0.0282494
chr21	46190904	46191003	18280897	0	-	0.545455	(0.53,0.59]	chr21	1550815	22	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000491729.1:ENST00000419093.5:ENST00000457828.6:ENST00000474319.1:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	1.88327	3.15803	4.43279	0.0298124	0.0026472	0.129773	0.0231864
chr8	56588625	56588706	9344584	0	+	0.469136	(0.455,0.49]	chr8	714709	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL37P6	ENSG00000241431.1	ENST00000464216.1:ENST00000460682.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	25	235	2	2.71487	3.1579949999999997	3.60112	8.82437e-6	9.22428e-10	2.72739e-4	9.79362e-8
chr15	84691534	84691617	15421078	0	-	0.433735	(0.42,0.455]	chr15	1219639	1	CDS_START	CDS_START:CDS:EXON_MRNA	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	54	2	2.61085	3.1578600000000003	3.70487	7.93561e-4	1.55091e-5	0.00988333	3.95473e-4
chr16	70253324	70253381	15996875	0	-	0.526316	(0.49,0.53]	chr16	1284596	2	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	109	2	2.87726	3.157845	3.43843	6.30634e-5	3.8155e-7	0.00135503	1.75037e-5
chr1	36300984	36301084	141692	0	+	0.52	(0.49,0.53]	chr1	17595	2	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.46766	3.1575499999999996	4.84744	0.0523669	3.70203e-4	0.194793	0.00515475
chr12	48936698	48936796	13322606	0	-	0.438776	(0.42,0.455]	chr12	1045238	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.89192	3.15751	3.4231	0.00157686	0.00112541	0.015761	0.0128481
chr2	61485767	61485864	2690423	0	-	0.329897	(0.29,0.33]	chr2	240338	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.99403	3.15747	4.32091	0.0202925	1.36836e-7	0.098158	7.34455e-6
chr19	1815610	1815701	17420311	0	-	0.296703	(0.29,0.33]	chr19	1452894	5	UTR3	UTR3:EXON_MRNA:PRIMIRNA	REXO1:MIR1909	ENSG00000079313.15:ENSG00000284216.1	ENST00000170168.9:ENST00000411312.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	6	33	2	2.76441	3.15745	3.55049	6.15323e-4	2.69341e-4	0.00765848	0.00434425
chrM	1258	1355	19377151	0	+	0.505155	(0.49,0.53]	chrM	1649798	8	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	2092	18198	2	2.85087	3.157445	3.46402	4.19441e-9	3.07332e-12	3.6593e-7	6.63274e-10
chr2	206146995	206147088	3133201	0	-	0.397849	(0.39,0.42]	chr2	277012	2	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.88836	3.15723	3.4261	0.0102432	0.00107164	0.062872	0.0118238
chr17	75222003	75222103	16353982	0	+	0.39	(0.36,0.39]	chr17	1327094	33	INTRON	INTRON	NUP85	ENSG00000125450.11	ENST00000245544.9:ENST00000583948.5:ENST00000579324.5:ENST00000449421.6:ENST00000581104.5:ENST00000579298.5:ENST00000578830.5:ENST00000583877.5:ENST00000577561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.72655	3.1570099999999996	4.58747	0.033108	6.55819e-4	0.13754	0.00860229
chr11	62722204	62722292	12410642	0	-	0.511364	(0.49,0.53]	chr11	961525	2	CDS	CDS:EXON_MRNA	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.03065	3.1569849999999997	4.28332	0.0189484	0.00338762	0.0958835	0.0288632
chr17	2681728	2681802	16086740	0	+	0.5	(0.49,0.53]	chr17	1293759	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000610190.2:ENST00000574213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.03065	3.1569849999999997	4.28332	0.0189484	0.00338762	0.0958835	0.0288632
chr2	43222784	43222880	2618831	0	-	0.333333	(0.33,0.36]	chr2	235738	5	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.28792	3.156975	4.02603	0.0239159	0.0071776	0.112531	0.048188
chr4	39766074	39766173	4801884	0	+	0.353535	(0.33,0.36]	chr4	396182	49	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.28792	3.156975	4.02603	0.0239159	0.0071776	0.112531	0.048188
chr5	139326223	139326284	6249066	0	+	0.344262	(0.33,0.36]	chr5	487016	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000505625.5:ENST00000502422.5:ENST00000512040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.28792	3.156975	4.02603	0.0239159	0.0071776	0.112531	0.048188
chr2	216148082	216148179	2380138	0	+	0.515464	(0.49,0.53]	chr2	213829	1	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	70	2	2.73196	3.156885	3.58181	3.65807e-4	4.83779e-6	0.0054989	1.51238e-4
chr11	75562150	75562245	12023281	0	+	0.621053	(0.59,1]	chr11	926999	2	UTR5	UTR5:EXON_MRNA	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	1.77181	3.15682	4.54183	0.0267363	0.0070583	0.118611	0.0478044
chr4	82842139	82842224	5496659	0	-	0.552941	(0.53,0.59]	chr4	440195	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	91	2	3.08958	3.156765	3.22395	1.30551e-4	5.81032e-6	0.0024373	1.75356e-4
chr7	133035655	133035748	9078013	0	-	0.505376	(0.49,0.53]	chr7	693067	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	CHCHD3:RP11-371A22.1	ENSG00000106554.13:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000634247.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	17	168	2	2.85053	3.15669	3.46285	1.90491e-5	2.15142e-8	5.15795e-4	1.49938e-6
chr3	186789269	186789358	3958285	0	+	0.449438	(0.42,0.455]	chr3	333880	1	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5:ENST00000494445.1:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.87159	3.156545	4.4415	0.0214479	2.94164e-6	0.102998	9.91141e-5
chr6	37174282	37174377	7136296	0	+	0.547368	(0.53,0.59]	chr6	549953	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	165	1584	2	2.8915	3.156345	3.42119	1.24112e-8	1.97145e-10	9.328e-7	2.75808e-8
chr11	62594332	62594407	12409369	0	-	0.573333	(0.53,0.59]	chr11	961042	2	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.14885	3.15634	4.16383	0.0262993	0.00659193	0.117164	0.0454205
chr12	112152791	112152881	13094585	0	+	0.555556	(0.53,0.59]	chr12	1021562	1	UTR3	UTR3:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000257604.9:ENST00000412615.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.14885	3.15634	4.16383	0.0262993	0.00659193	0.117164	0.0454205
chr16	1961565	1961634	15489751	0	+	0.565217	(0.53,0.59]	chr16	1226446	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFB10	ENSG00000140990.15	ENST00000268668.11:ENST00000543683.6:ENST00000565031.1:ENST00000569148.1:ENST00000570172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.14885	3.15634	4.16383	0.0262993	0.00659193	0.117164	0.0454205
chr18	50282425	50282508	17124474	0	-	0.578313	(0.53,0.59]	chr18	1406071	2	UTR3	UTR3:EXON_MRNA	CXXC1	ENSG00000154832.16	ENST00000412036.6:ENST00000285106.11:ENST00000589940.5:ENST00000590901.5:ENST00000589548.6:ENST00000673786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.14885	3.15634	4.16383	0.0262993	0.00659193	0.117164	0.0454205
chr19	58556686	58556742	17643538	0	-	0.535714	(0.53,0.59]	chr19	1491159	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBE2M	ENSG00000130725.8	ENST00000253023.8:ENST00000595957.5:ENST00000596985.1:ENST00000599829.1:ENST00000593801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.14885	3.15634	4.16383	0.0262993	0.00659193	0.117164	0.0454205
chr4	77038039	77038135	4900568	0	+	0.479167	(0.455,0.49]	chr4	403561	14	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.50904	3.15632	3.8036	0.0310515	1.59194e-4	0.131262	0.00263091
chr1	26255170	26255269	108657	0	+	0.494949	(0.49,0.53]	chr1	12909	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000480446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.87268	3.156295	3.43991	0.00175078	8.40266e-5	0.0180053	0.00158427
chr6	37170980	37171031	7136258	0	+	0.588235	(0.53,0.59]	chr6	549935	1	CDS	CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	2.56002	3.156185	3.75235	0.00634904	1.48881e-6	0.0446708	5.60262e-5
chr14	101979405	101979492	14495085	0	+	0.436782	(0.42,0.455]	chr14	1132951	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.68905	3.1561	3.62315	0.00119301	4.234e-4	0.0128249	0.00613535
chr14	100343274	100343330	14788594	0	-	0.517857	(0.49,0.53]	chr14	1158712	1	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000554601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	2.38683	3.156055	3.92528	0.012654	3.34795e-6	0.0718207	1.10631e-4
chr1	19197140	19197202	876950	0	-	0.467742	(0.455,0.49]	chr1	90386	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	3.06914	3.1559999999999997	3.24286	6.6649e-4	2.77105e-4	0.00820018	0.00444204
chr11	248994	249057	11756103	0	+	0.571429	(0.53,0.59]	chr11	897597	2	CDS	CDS:UTR3:EXON_MRNA	PSMD13	ENSG00000185627.18	ENST00000532097.6:ENST00000431206.6:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1:ENST00000533717.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.0042	3.15598	4.30776	0.0113999	0.00407289	0.0668496	0.0324137
chr5	36962198	36962274	5935584	0	+	0.486842	(0.455,0.49]	chr5	465404	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000505998.5:ENST00000504430.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.29155	3.155975	4.0204	0.00736097	0.00354718	0.0490627	0.0291792
chr1	161518543	161518642	500535	0	+	0.353535	(0.33,0.36]	chr1	54251	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000537821.2:ENST00000461298.1:ENST00000459885.1:ENST00000486608.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	20	127	2	2.76503	3.15594	3.54685	2.30109e-6	1.77878e-7	8.09692e-5	1.03637e-5
chr13	20781223	20781323	13923347	0	-	0.31	(0.29,0.33]	chr13	1092233	40	UTR3	UTR3:EXON_MRNA	XPO4	ENSG00000132953.17	ENST00000255305.10	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.48886	3.15583	3.8228	0.0055888	1.45428e-4	0.0419759	0.00244094
chr7	128091992	128092058	8519378	0	+	0.515152	(0.49,0.53]	chr7	649826	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5:ENST00000485871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	66	2	2.87268	3.15576	3.43884	0.00175078	3.18417e-6	0.0180053	1.06148e-4
chr13	46154804	46154886	14009903	0	-	0.378049	(0.36,0.39]	chr13	1098561	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.82476	3.155725	3.48669	8.21459e-4	6.40815e-5	0.0102028	0.00125657
chr16	12663787	12663887	15858534	0	-	0.42	(0.39,0.42]	chr16	1267048	41	UTR3	UTR3:EXON_MRNA	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.11549	3.155685	3.19588	0.00403491	0.00321212	0.032143	0.0280721
chr2	168772447	168772547	2194374	0	+	0.4	(0.39,0.42]	chr2	200596	29	UTR3	UTR3:EXON_MRNA	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.11549	3.155685	3.19588	0.00403491	0.00321212	0.032143	0.0280721
chr2	226864959	226865042	2411268	0	+	0.39759	(0.39,0.42]	chr2	216819	3	CDS	CDS:EXON_MRNA	RHBDD1	ENSG00000144468.17	ENST00000424132.1:ENST00000341329.7:ENST00000423616.1:ENST00000392062.7:ENST00000448992.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.11549	3.155685	3.19588	0.00403491	0.00321212	0.032143	0.0280721
chr1	111461092	111461191	407356	0	+	0.373737	(0.36,0.39]	chr1	40192	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	88	2	2.92145	3.1554200000000003	3.38939	2.18158e-5	6.31858e-7	5.20454e-4	2.99882e-5
chr9	83660158	83660254	10710345	0	-	0.447917	(0.42,0.455]	chr9	810178	3	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	47	2	1.96087	3.15537	4.34987	0.00983972	5.55486e-6	0.0615953	1.68903e-4
chr1	67219573	67219651	263726	0	+	0.320513	(0.29,0.33]	chr1	29479	1	CDS	CDS:UTR5:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	48	2	2.42855	3.15531	3.88207	2.32642e-4	1.56259e-4	0.00355641	0.00282486
chr14	22924878	22924962	14527939	0	-	0.5	(0.49,0.53]	chr14	1138154	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000553502.5:ENST00000555530.5:ENST00000556043.5:ENST00000553550.5:ENST00000554716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	3.02891	3.154945	3.28098	8.23332e-4	3.89192e-5	0.0102121	8.42006e-4
chr2	61482426	61482482	2690384	0	-	0.303571	(0.29,0.33]	chr2	240327	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	39	2	2.70085	3.154875	3.6089	4.87372e-4	5.55178e-5	0.00638318	0.00123377
chr19	23828049	23828147	17276794	0	+	0.295918	(0.29,0.33]	chr19	1427764	1	INTRON	INTRON	ZNF726P1	ENSG00000233836.7	ENST00000471224.5:ENST00000475499.1:ENST00000472297.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	43	2	2.17855	3.154535	4.13052	0.0183673	6.70339e-7	0.0928041	2.8446e-5
chr14	22901629	22901729	14527676	0	-	0.51	(0.49,0.53]	chr14	1138036	86	UTR3	UTR3:EXON_MRNA	RBM23	ENSG00000100461.18	ENST00000359890.8:ENST00000555209.5:ENST00000399922.6:ENST00000557667.5:ENST00000346528.9:ENST00000542016.6:ENST00000553884.5:ENST00000556838.5:ENST00000557245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.8671	3.1543	3.4415	0.0100489	9.98297e-4	0.0623334	0.0111246
chr16	14951925	14952025	15561744	0	+	0.51	(0.49,0.53]	chr16	1232240	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NPIPA1	ENSG00000183426.17	ENST00000472413.5:ENST00000328085.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.8671	3.1543	3.4415	0.0100489	9.98297e-4	0.0623334	0.0111246
chr17	1880616	1880691	16084366	0	+	0.52	(0.49,0.53]	chr17	1293333	2	CDS	CDS:EXON_MRNA	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.8671	3.1543	3.4415	0.0100489	9.98297e-4	0.0623334	0.0111246
chr8	15673746	15673836	9207874	0	+	0.455556	(0.455,0.49]	chr8	703422	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUSC3	ENSG00000104723.21	ENST00000503191.5:ENST00000382020.8:ENST00000515859.5:ENST00000506802.5:ENST00000503731.6:ENST00000510836.5:ENST00000509380.5:ENST00000507400.1:ENST00000511783.2:ENST00000508446.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.79605	3.15418	4.51231	0.0427708	1.73754e-6	0.168094	6.36428e-5
chr12	119672382	119672464	13114431	0	+	0.5	(0.49,0.53]	chr12	1023533	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000537400.1:ENST00000540121.5:ENST00000545223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.78794	3.153875	3.51981	0.00251838	6.88328e-4	0.0226599	0.00876781
chr2	112646828	112646928	2001741	0	+	0.5	(0.49,0.53]	chr2	190003	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.78794	3.153875	3.51981	0.00251838	6.88328e-4	0.0226599	0.00876781
chrX	53533308	53533408	19077147	0	-	0.53	(0.49,0.53]	chrX	1622624	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.78794	3.153875	3.51981	0.00251838	6.88328e-4	0.0226599	0.00876781
chr17	40402905	40402979	16538897	0	-	0.459459	(0.455,0.49]	chr17	1354621	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	14	111	2	2.41254	3.15369	3.89484	1.16256e-4	6.63217e-8	0.0020505	4.34166e-6
chr1	1040736	1040808	2256	0	+	0.680556	(0.59,1]	chr1	475	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	31	2	2.19052	3.15362	4.11672	0.0237927	0.0222273	0.109413	0.105595
chr16	33979448	33979506	15640328	0	+	0.62069	(0.59,1]	chr16	1242723	1	EXON_PSEUDO	EXON_PSEUDO	RP11-598D12.4	ENSG00000198555.7	ENST00000568600.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	31	2	2.19052	3.15362	4.11672	0.0237927	0.0222273	0.109413	0.105595
chr11	119336719	119336817	12163915	0	+	0.510204	(0.49,0.53]	chr11	938094	4	UTR3	UTR3:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.78723	3.1535200000000003	3.51981	7.16432e-4	6.88328e-4	0.00876781	0.00859467
chr15	49127456	49127554	15267103	0	-	0.306122	(0.29,0.33]	chr15	1204405	49	UTR3	UTR3:EXON_MRNA:INTRON	COPS2	ENSG00000166200.15	ENST00000560240.5:ENST00000388901.10:ENST00000299259.10:ENST00000542928.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	56	2	2.7724	3.1534950000000004	3.53459	6.68288e-5	1.35827e-5	0.00130254	3.88905e-4
chr8	47828167	47828257	9816042	0	-	0.366667	(0.36,0.39]	chr8	742591	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	2.77531	3.1533300000000004	3.53135	4.32577e-5	4.31705e-7	0.0010046	1.95375e-5
chr15	64376823	64376905	15341505	0	-	0.463415	(0.455,0.49]	chr15	1211059	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	2.92901	3.153095	3.37718	0.00141135	2.04354e-5	0.0151901	4.9659e-4
chr7	5603946	5604030	8112105	0	+	0.583333	(0.53,0.59]	chr7	620033	2	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000405801.2:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	50	2	2.87264	3.1530300000000002	3.43342	0.00168899	8.93729e-5	0.0175515	0.00165837
chr1	45693289	45693375	175252	0	+	0.488372	(0.455,0.49]	chr1	22794	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	2.84202	3.1529550000000004	3.46389	9.14164e-4	5.41187e-4	0.0110519	0.00689416
chrX	53536379	53536475	19077187	0	-	0.46875	(0.455,0.49]	chrX	1622648	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000474971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.84202	3.1529550000000004	3.46389	9.14164e-4	5.41187e-4	0.0110519	0.00689416
chrX	53546764	53546825	19077308	0	-	0.557377	(0.53,0.59]	chrX	1622700	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.14205	3.15294	4.16383	0.0123179	0.00659193	0.070688	0.0454205
chr17	47623083	47623180	16251598	0	+	0.268041	[0,0.29]	chr17	1316624	13	UTR3	UTR3:EXON_MRNA:INTRON	NPEPPS	ENSG00000141279.17	ENST00000677710.1:ENST00000530173.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000676492.1:ENST00000530514.6:ENST00000678902.1:ENST00000528565.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	2.40395	3.1528549999999997	3.90176	0.0210081	0.00977224	0.101116	0.0611259
chr4	123316251	123316350	5092174	0	+	0.222222	[0,0.29]	chr4	413181	23	UTR3	UTR3:EXON_MRNA	SPATA5	ENSG00000145375.9	ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.40395	3.1528549999999997	3.90176	0.0210081	0.00977224	0.101116	0.0611259
chr5	172951405	172951503	6387678	0	+	0.540816	(0.53,0.59]	chr5	496127	7	UTR3	UTR3:EXON_MRNA	ERGIC1	ENSG00000113719.16	ENST00000393784.8:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.56002	3.1527200000000004	3.74542	0.00634904	2.30148e-4	0.0446708	0.00352524
chr19	48616149	48616220	17602799	0	-	0.690141	(0.59,1]	chr19	1482902	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000549533.1:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	16	295	2	3.00691	3.1526899999999998	3.29847	1.48683e-5	1.74737e-6	4.18375e-4	6.39864e-5
chr1	108937247	108937332	1217927	0	-	0.482353	(0.455,0.49]	chr1	118631	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.10347	3.15268	4.20189	0.0313707	0.00397662	0.13127	0.0322851
chr17	1656478	1656565	16401329	0	-	0.482759	(0.455,0.49]	chr17	1334852	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.10347	3.15268	4.20189	0.0313707	0.00397662	0.13127	0.0322851
chr11	77665731	77665830	12473792	0	-	0.454545	(0.42,0.455]	chr11	970340	59	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.50649	3.15265	3.79881	0.0302857	1.65328e-4	0.130016	0.0029267300000000002
chr19	38308978	38309057	17559413	0	-	0.620253	(0.59,1]	chr19	1474577	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000588002.5:ENST00000589247.1:ENST00000587361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	68	2	2.84944	3.1526199999999998	3.4558	0.0128238	1.35447e-4	0.0719798	0.00231202
chr10	28619606	28619703	10990631	0	+	0.371134	(0.36,0.39]	chr10	835918	1	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.1437	3.152565	4.16143	0.0340515	0.00486719	0.141465	0.0366328
chr12	93576048	93576147	13019805	0	+	0.373737	(0.36,0.39]	chr12	1013520	5	UTR3	UTR3:EXON_MRNA:INTRON	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000551556.2:ENST00000549510.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.1437	3.152565	4.16143	0.0340515	0.00486719	0.141465	0.0366328
chr7	157178768	157178847	8635835	0	+	0.367089	(0.36,0.39]	chr7	659664	2	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.1437	3.152565	4.16143	0.0340515	0.00486719	0.141465	0.0366328
chr1	111440367	111440463	1224896	0	-	0.5	(0.49,0.53]	chr1	119932	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-552M11.4:WDR77	ENSG00000243960.1:ENSG00000116455.14	ENST00000445680.1:ENST00000416099.1:ENST00000235090.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	19	2	2.18239	3.15251	4.12263	0.024394	0.00591451	0.111797	0.0427941
chr8	99887604	99887618	9970691	0	-	0.5	(0.49,0.53]	chr8	752093	1	CDS	CDS:EXON_MRNA	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5:ENST00000518171.5:ENST00000523016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.18239	3.15251	4.12263	0.024394	0.00591451	0.111797	0.0427941
chr2	74529131	74529206	2743309	0	-	0.48	(0.455,0.49]	chr2	244616	1	CDS	CDS:EXON_MRNA	AUP1	ENSG00000115307.17	ENST00000425118.5:ENST00000377526.4:ENST00000463900.5:ENST00000466894.5:ENST00000472800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.27152	3.1525049999999997	4.03349	0.00786769	4.13044e-5	0.0514287	9.71332e-4
chr2	187465292	187465388	3070152	0	-	0.46875	(0.455,0.49]	chr2	271827	12	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.27152	3.1525049999999997	4.03349	0.00786769	4.13044e-5	0.0514287	9.71332e-4
chr1	8352894	8352993	847350	0	-	0.363636	(0.36,0.39]	chr1	85701	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000467350.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.63521	3.152495	3.66978	0.00633242	3.25031e-4	0.0446708	0.00463603
chr3	139357762	139357862	4479463	0	-	0.35	(0.33,0.36]	chr3	372202	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000502734.2:ENST00000676700.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	3.1452	3.1524799999999997	3.15976	0.00437542	9.8054e-5	0.0340502	0.00177549
chr16	69756628	69756721	15995183	0	-	0.548387	(0.53,0.59]	chr16	1284292	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2033A16.2	ENSG00000260290.2	ENST00000566277.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	40	2	3.02054	3.15238	3.28422	0.00577011	2.10061e-4	0.0426551	0.00327655
chr9	130887475	130887575	10494306	0	+	0.6	(0.59,1]	chr9	792936	19	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	2.72343	3.15238	3.58133	0.00125966	8.92036e-4	0.0133806	0.010856
chr1	112670428	112670527	411476	0	+	0.363636	(0.36,0.39]	chr1	40540	4	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	27	192	2	3.11848	3.152285	3.18609	9.65569e-8	6.52625e-8	5.42027e-6	4.29206e-6
chr14	23274982	23275081	14530134	0	-	0.313131	(0.29,0.33]	chr14	1138728	27	UTR3	UTR3:EXON_MRNA	HOMEZ	ENSG00000215271.9	ENST00000357460.7:ENST00000561013.2	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.06067	3.15227	4.24387	0.0384863	0.00263476	0.149227	0.0239118
chr3	120330400	120330499	4404421	0	-	0.313131	(0.29,0.33]	chr3	365211	60	UTR3	UTR3:EXON_MRNA	LRRC58	ENSG00000163428.4	ENST00000295628.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.06067	3.15227	4.24387	0.0384863	0.00263476	0.149227	0.0239118
chr5	154805956	154806032	6314923	0	+	0.473684	(0.455,0.49]	chr5	492492	2	CDS	CDS:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6:ENST00000519194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.12994	3.152005	4.17407	0.0304832	1.754e-5	0.130204	4.38078e-4
chr16	88725008	88725080	16074517	0	-	0.763889	(0.59,1]	chr16	1291678	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000474606.1:ENST00000475586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	46	2	3.1277	3.15193	3.17616	0.00490589	0.00434232	0.0366648	0.0339139
chr22	27894554	27894638	18456336	0	-	0.357143	(0.33,0.36]	chr22	1574583	1	CDS	CDS:EXON_MRNA	PITPNB	ENSG00000180957.18	ENST00000335272.10:ENST00000455418.7:ENST00000320996.14:ENST00000634017.1:ENST00000477861.1:ENST00000415296.5:ENST00000436663.1:ENST00000465179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	2.70185	3.151915	3.60198	0.00121183	6.01238e-4	0.0129756	0.00811676
chr16	173500	173600	15480737	0	+	0.64	(0.59,1]	chr16	1224199	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	86	1531	2	3.08388	3.1517749999999998	3.21967	1.49399e-7	9.82123e-8	7.93805e-6	6.1511e-6
chr7	100093031	100093082	8949615	0	-	0.627451	(0.59,1]	chr7	683498	1	CDS	CDS:EXON_MRNA:PRIMIRNA	MCM7:MIR25	ENSG00000166508.18:ENSG00000207547.1	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000384816.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	2	50	2	2.5215	3.1516900000000003	3.78188	0.032241	3.33896e-4	0.135671	0.00472923
chr2	85320292	85320390	2770113	0	-	0.418367	(0.39,0.42]	chr2	245643	24	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.62131	3.1514249999999997	3.68154	0.00609677	3.05414e-4	0.0439136	0.00442973
chr7	42932386	42932486	8253260	0	+	0.63	(0.59,1]	chr7	628533	1	CDS_START	CDS_START:CDS:EXON_MRNA	MRPL32	ENSG00000106591.4	ENST00000223324.3:ENST00000432845.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	31	2	2.03921	3.151375	4.26354	0.0371471	0.0134233	0.151849	0.0743429
chr2	27358198	27358296	1692245	0	+	0.377551	(0.36,0.39]	chr2	165927	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	AC074117.10	ENSG00000234072.1	ENST00000447070.1:ENST00000412749.1	lncRNA	lncRNA	lncRNA	lncRNA	3	29	2	2.62565	3.15128	3.67691	0.0219469	2.38454e-5	0.103959	6.18922e-4
chr11	62722812	62722903	12410650	0	-	0.505495	(0.49,0.53]	chr11	961531	1	CDS	CDS:EXON_MRNA	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7:ENST00000540127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.01913	3.151225	4.28332	0.0111252	0.00338762	0.0665375	0.0288632
chr7	23300927	23301017	8178430	0	+	0.4	(0.39,0.42]	chr7	623950	2	CDS	CDS:EXON_MRNA	MALSU1	ENSG00000156928.5	ENST00000466681.2:ENST00000287543.4:ENST00000481564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.18155	3.1510749999999996	4.1206	0.0283931	0.00597537	0.127654	0.0428562
chrX	119454007	119454101	18841490	0	+	0.393617	(0.39,0.42]	chrX	1605545	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A43	ENSG00000077713.19	ENST00000217909.8:ENST00000488158.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.18155	3.1510749999999996	4.1206	0.0283931	0.00597537	0.127654	0.0428562
chr4	7061043	7061125	5298622	0	-	0.487805	(0.455,0.49]	chr4	426858	2	CDS	CDS:EXON_MRNA	GRPEL1	ENSG00000109519.13	ENST00000264954.5:ENST00000504920.5:ENST00000509696.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.83792	3.150905	3.46389	0.0110512	9.14164e-4	0.0665375	0.0110519
chr9	128983292	128983380	10482586	0	+	0.488636	(0.455,0.49]	chr9	791069	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.83792	3.150905	3.46389	0.0110512	9.14164e-4	0.0665375	0.0110519
chr18	51027393	51027493	16874754	0	+	0.39	(0.36,0.39]	chr18	1389937	394	INTRON	INTRON	RP11-729L2.2	ENSG00000267699.2	ENST00000590722.2:ENST00000588256.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	16	2	2.05966	3.1508	4.24194	0.0366015	0.00276729	0.145024	0.0247437
chr6	69790295	69790322	7788925	0	-	0.222222	[0,0.29]	chr6	596422	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000647669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.8304	3.15064	3.47088	0.0121878	0.0015572	0.0701019	0.0165415
chr11	14490564	14490621	12281897	0	-	0.385965	(0.36,0.39]	chr11	949663	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.63115	3.1504649999999996	3.66978	0.0245975	3.25031e-4	0.114841	0.00463603
chr11	86344602	86344667	12046768	0	+	0.384615	(0.36,0.39]	chr11	929008	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HIKESHI	ENSG00000149196.16	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000530208.1:ENST00000618164.1:ENST00000529405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.63115	3.1504649999999996	3.66978	0.0245975	3.25031e-4	0.114841	0.00463603
chr16	21656209	21656306	15585612	0	+	0.360825	(0.36,0.39]	chr16	1235205	9	UTR3	UTR3:EXON_MRNA	METTL9	ENSG00000197006.14	ENST00000358154.8:ENST00000615720.4:ENST00000564733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.63115	3.1504649999999996	3.66978	0.0245975	3.25031e-4	0.114841	0.00463603
chr9	32450507	32450606	10233133	0	+	0.363636	(0.36,0.39]	chr9	769192	5	UTR3	UTR3:EXON_MRNA	ACO1	ENSG00000122729.19	ENST00000541043.5:ENST00000379923.5:ENST00000309951.8	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.63115	3.1504649999999996	3.66978	0.0245975	3.25031e-4	0.114841	0.00463603
chr7	6049978	6050045	8662684	0	-	0.432836	(0.42,0.455]	chr7	662609	2	CDS	CDS:UTR3:EXON_MRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000431744.5:ENST00000463213.5:ENST00000446699.1:ENST00000461493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	2.7523	3.15034	3.54838	0.0153283	5.9986e-4	0.0828908	0.0075062
chr12	111516317	111516399	13540500	0	-	0.487805	(0.455,0.49]	chr12	1065332	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000550236.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000481331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.9967	3.15027	3.30384	0.00650423	0.00184955	0.0454205	0.0178046
chr20	34741057	34741156	17948849	0	-	0.474747	(0.455,0.49]	chr20	1520152	8	CDS	CDS:EXON_MRNA:INTRON	NCOA6	ENSG00000198646.14	ENST00000628752.2:ENST00000359003.7:ENST00000374796.6:ENST00000612493.4:ENST00000616167.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.9967	3.15027	3.30384	0.00650423	0.00184955	0.0454205	0.0178046
chr2	24074134	24074194	2555724	0	-	0.316667	(0.29,0.33]	chr2	229439	2	CDS	CDS:EXON_MRNA	SF3B6	ENSG00000115128.7	ENST00000233468.5:ENST00000478050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.34203	3.14989	3.95775	0.010113	2.59717e-6	0.0626311	8.95894e-5
chr16	374220	374309	15817132	0	-	0.606742	(0.59,1]	chr16	1260219	1	CDS	CDS:EXON_MRNA	PGAP6	ENSG00000129925.11	ENST00000431232.7:ENST00000424078.5:ENST00000250930.7:ENST00000448854.1:ENST00000467452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.42639	3.1498600000000003	3.87333	0.0409084	0.0348991	0.163285	0.141505
chr19	10321047	10321117	17459345	0	-	0.7	(0.59,1]	chr19	1460742	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000585935.5:ENST00000593136.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	23	2	2.42639	3.1498600000000003	3.87333	0.0409084	0.0348991	0.163285	0.141505
chr19	35250314	35250403	17303926	0	+	0.629214	(0.59,1]	chr19	1430653	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LSR	ENSG00000105699.17	ENST00000597933.5:ENST00000602122.5:ENST00000621372.4:ENST00000361790.7:ENST00000602003.1:ENST00000360798.7:ENST00000354900.7:ENST00000347609.8:ENST00000605618.6:ENST00000427250.5:ENST00000602044.2:ENST00000601623.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	23	2	2.42639	3.1498600000000003	3.87333	0.0409084	0.0348991	0.163285	0.141505
chr4	1728099	1728197	4680962	0	+	0.663265	(0.59,1]	chr4	387955	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	23	2	2.42639	3.1498600000000003	3.87333	0.0409084	0.0348991	0.163285	0.141505
chr7	151213954	151214053	9129918	0	-	0.616162	(0.59,1]	chr7	697850	26	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	1	23	2	2.42639	3.1498600000000003	3.87333	0.0409084	0.0348991	0.163285	0.141505
chr8	144316356	144316454	10148320	0	-	0.642857	(0.59,1]	chr8	763446	19	UTR3	UTR3:EXON_MRNA	DGAT1	ENSG00000185000.12	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	23	2	2.42639	3.1498600000000003	3.87333	0.0409084	0.0348991	0.163285	0.141505
chr2	10127086	10127153	1629020	0	+	0.447761	(0.42,0.455]	chr2	161727	1	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000487591.5:ENST00000462343.1:ENST00000485717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	3.10874	3.14976	3.19078	0.00310864	5.40397e-4	0.0274272	0.00688813
chr6	149683508	149683607	8018502	0	-	0.434343	(0.42,0.455]	chr6	612683	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5:ENST00000392273.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	3.10874	3.14976	3.19078	0.00310864	5.40397e-4	0.0274272	0.00688813
chr5	140118041	140118141	6252274	0	+	0.28	[0,0.29]	chr5	487304	30	UTR3	UTR3:EXON_MRNA	PURA	ENSG00000185129.8	ENST00000331327.5	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	1.93716	3.149495	4.36183	0.0548436	0.00170062	0.189511	0.01759
chr8	11844339	11844437	9699199	0	-	0.377551	(0.36,0.39]	chr8	734804	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	66	2	2.84003	3.149465	3.4589	9.87237e-5	2.06322e-5	0.00194682	4.99356e-4
chr1	32222537	32222630	127470	0	+	0.537634	(0.53,0.59]	chr1	15782	1	CDS	CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	66	2	2.01284	3.1494400000000002	4.28604	0.00319369	9.59485e-6	0.0267777	2.93255e-4
chr17	75319876	75319974	16683201	0	-	0.469388	(0.455,0.49]	chr17	1373171	12	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1:ENST00000648046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	2.68485	3.1493599999999997	3.61387	2.15323e-4	2.88949e-5	0.0033324	7.23839e-4
chr6	7881707	7881803	7587972	0	-	0.416667	(0.39,0.42]	chr6	578854	3	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	53	2	2.149	3.14932	4.14964	0.0149155	5.90745e-7	0.0812412	2.55031e-5
chr1	154258976	154259030	480030	0	+	0.388889	(0.36,0.39]	chr1	49700	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	3.00558	3.14919	3.2928	2.65442e-4	2.21724e-4	0.004287	0.00341828
chr5	145762289	145762387	6889251	0	-	0.397959	(0.39,0.42]	chr5	527333	14	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.01677	3.149025	4.28128	0.0235818	0.00342611	0.111323	0.0283456
chr3	9371440	9371536	3297356	0	+	0.4375	(0.42,0.455]	chr3	289364	5	CDS	CDS:EXON_MRNA	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7:ENST00000515662.6:ENST00000441127.5:ENST00000416603.1:ENST00000461636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.59462	3.148675	3.70273	0.0215502	0.0062772	0.102904	0.0445415
chr2	189782421	189782495	3082960	0	-	0.337838	(0.33,0.36]	chr2	272443	1	CDS	CDS:EXON_MRNA	ORMDL1	ENSG00000128699.14	ENST00000392349.9:ENST00000392350.7:ENST00000325795.7:ENST00000409519.5:ENST00000458355.1:ENST00000442547.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.13748	3.14862	3.15976	0.00437542	0.00379835	0.0340502	0.0307587
chr10	58396159	58396258	11057868	0	+	0.393939	(0.39,0.42]	chr10	841634	12	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.87119	3.1485149999999997	4.42584	0.0373134	0.00199429	0.152293	0.0189001
chr7	76329576	76329676	8863411	0	-	0.59	(0.53,0.59]	chr7	677477	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	14	166	2	2.77572	3.148295	3.52087	1.22755e-4	2.8564e-8	0.00233156	1.91275e-6
chr1	247879743	247879842	816552	0	+	0.454545	(0.42,0.455]	chr1	80729	34	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.05515	3.1482399999999995	4.24133	0.017518	0.00326918	0.0924156	0.0282494
chr16	2766684	2766782	15494942	0	+	0.561224	(0.53,0.59]	chr16	1227802	53	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	17	167	2	2.39592	3.1480449999999998	3.90017	7.93558e-5	2.35304e-8	0.00165505	1.62079e-6
chr20	45418915	45418979	17801637	0	+	0.5625	(0.53,0.59]	chr20	1505092	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000638953.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639194.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1:ENST00000638415.1:ENST00000639250.1:ENST00000638537.1:ENST00000638962.1:ENST00000640940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.16037	3.1480300000000003	4.13569	0.0254312	2.50241e-5	0.117089	5.82427e-4
chr9	136211263	136211357	10888844	0	-	0.531915	(0.53,0.59]	chr9	826974	1	CDS	CDS:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10:ENST00000455222.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.90978	3.1479850000000003	3.38619	0.00857883	2.01278e-5	0.0552386	4.89797e-4
chr12	50142052	50142110	13327788	0	-	0.327586	(0.29,0.33]	chr12	1046482	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CERS5	ENSG00000139624.14	ENST00000317551.12:ENST00000422340.6:ENST00000551697.5:ENST00000380189.8:ENST00000547787.5:ENST00000551005.5:ENST00000550547.5:ENST00000438450.6:ENST00000542320.5:ENST00000547800.2:ENST00000549089.1:ENST00000548930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	2.67277	3.147945	3.62312	0.0255386	0.0222826	0.117089	0.104593
chr12	69273171	69273270	12941732	0	+	0.30303	(0.29,0.33]	chr12	1008771	38	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	2.67277	3.147945	3.62312	0.0255386	0.0222826	0.117089	0.104593
chr13	99563154	99563254	13865660	0	+	0.31	(0.29,0.33]	chr13	1087238	5	UTR3	UTR3:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.67277	3.147945	3.62312	0.0255386	0.0222826	0.117089	0.104593
chr5	103133550	103133648	6132548	0	+	0.326531	(0.29,0.33]	chr5	479458	2	CDS	CDS:EXON_MRNA:INTRON	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000507921.5:ENST00000504275.1:ENST00000358359.8:ENST00000613674.4:ENST00000502481.5:ENST00000414217.5:ENST00000627916.2:ENST00000507310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	2.67277	3.147945	3.62312	0.0255386	0.0222826	0.117089	0.104593
chr7	12653411	12653511	8136559	0	+	0.31	(0.29,0.33]	chr7	621804	8	UTR3	UTR3:EXON_MRNA	SCIN	ENSG00000006747.15	ENST00000297029.10:ENST00000519209.5	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.67277	3.147945	3.62312	0.0255386	0.0222826	0.117089	0.104593
chr9	83978452	83978552	10712986	0	-	0.31	(0.29,0.33]	chr9	810547	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	2.67277	3.147945	3.62312	0.0255386	0.0222826	0.117089	0.104593
chrX	24077363	24077460	18616686	0	+	0.360825	(0.36,0.39]	chrX	1589843	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	194	2	2.77687	3.147945	3.51902	4.387e-6	2.53928e-9	1.52747e-4	2.37446e-7
chr1	230255217	230255280	749551	0	+	0.634921	(0.59,1]	chr1	76057	1	CDS	CDS:EXON_MRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.32455	3.147865	3.97118	0.0520547	1.3379e-4	0.193787	0.00229039
chrX	153841250	153841328	18916216	0	+	0.435897	(0.42,0.455]	chrX	1611462	1	EXON_PSEUDO	EXON_PSEUDO	CYCSP45	ENSG00000184844.6	ENST00000402289.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	82	2	2.66773	3.147735	3.62774	6.96894e-5	3.46808e-6	0.00134514	1.25827e-4
chr5	150094861	150094954	6293951	0	+	0.430108	(0.42,0.455]	chr5	491108	7	EXON_PSEUDO	EXON_PSEUDO	RPL7P1	ENSG00000214485.6	ENST00000468161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	74	2	3.09173	3.1476100000000002	3.20349	1.40817e-4	6.20987e-6	0.00258348	1.85694e-4
chr5	134924122	134924209	6232558	0	+	0.402299	(0.39,0.42]	chr5	485526	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCBD2:MTND6P4	ENSG00000132570.15:ENSG00000249119.1	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1:ENST00000506002.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	11	86	2	3.08509	3.147425	3.20976	4.0097e-5	1.17261e-6	8.62567e-4	5.02825e-5
chr12	103947756	103947851	13056928	0	+	0.378947	(0.36,0.39]	chr12	1017364	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	2.40203	3.14738	3.89273	8.61476e-4	6.93625e-8	0.0105878	4.08152e-6
chr7	56078363	56078435	8290722	0	+	0.611111	(0.59,1]	chr7	631564	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000531229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	99	2	3.08707	3.147195	3.20732	8.79989e-4	1.12583e-4	0.0107294	0.00199971
chr3	4983497	4983592	3277645	0	+	0.6	(0.59,1]	chr3	288720	8	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	8	165	2	2.50936	3.1469899999999997	3.78462	0.00161521	1.01238e-6	0.016933900000000002	4.03248e-5
chr12	885509	885605	12681425	0	+	0.447917	(0.42,0.455]	chr12	984118	10	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	78	2	2.90284	3.1468049999999996	3.39077	4.27478e-4	1.44882e-6	0.00618684	5.46392e-5
chr1	8352595	8352694	847347	0	-	0.555556	(0.53,0.59]	chr1	85701	3	UTR3	UTR3:EXON_MRNA	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.90978	3.1466250000000002	3.38347	0.00857883	0.00132446	0.0552386	0.0138834
chr17	1651483	1651553	16401273	0	-	0.542857	(0.53,0.59]	chr17	1334833	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.90978	3.1466250000000002	3.38347	0.00857883	0.00132446	0.0552386	0.0138834
chr1	1052593	1052689	2420	0	+	0.5	(0.49,0.53]	chr1	579	7	EXON_MRNA	EXON_MRNA:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	2.68653	3.14653	3.60653	0.00122977	4.50981e-4	0.013593	0.00605268
chr13	110893027	110893088	14157824	0	-	0.393443	(0.39,0.42]	chr13	1107363	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANKRD10	ENSG00000088448.14	ENST00000267339.6:ENST00000485844.1:ENST00000603993.1:ENST00000489973.6:ENST00000310847.8:ENST00000465753.1:ENST00000475809.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	82	2	2.19875	3.14647	4.09419	1.87261e-4	2.95839e-5	0.00299812	7.34143e-4
chr17	40407611	40407674	16538955	0	-	0.333333	(0.33,0.36]	chr17	1354653	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.28792	3.1464100000000004	4.0049	0.0239159	1.77926e-6	0.112531	6.4851e-5
chr1	37590705	37590775	947485	0	-	0.428571	(0.42,0.455]	chr1	99580	1	CDS	CDS:EXON_MRNA	GNL2	ENSG00000134697.13	ENST00000373062.8	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.86963	3.146365	3.4231	0.00112541	4.62477e-4	0.0128481	0.00613242
chr4	143871855	143871954	5695928	0	-	0.424242	(0.42,0.455]	chr4	451429	11	UTR3	UTR3:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	2.86963	3.146365	3.4231	0.00112541	4.62477e-4	0.0128481	0.00613242
chr4	38688973	38689071	4796573	0	+	0.520408	(0.49,0.53]	chr4	395562	5	CDS	CDS:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.95928	3.14626	3.33324	0.00162947	9.07604e-5	0.0169972	0.00167715
chr22	39018387	39018485	18368447	0	+	0.663265	(0.59,1]	chr22	1562849	1	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	102	2	2.12266	3.14621	4.16976	0.00351888	4.80088e-5	0.0298102	9.91058e-4
chr3	152464980	152465080	3818528	0	+	0.42	(0.39,0.42]	chr3	325707	27	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	153	2	2.74821	3.14601	3.54381	2.72732e-6	6.05757e-8	1.02458e-4	3.63874e-6
chr15	52938123	52938222	15289455	0	-	0.464646	(0.455,0.49]	chr15	1206821	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P22	ENSG00000259612.1	ENST00000559385.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	23	2	2.27152	3.1459600000000005	4.0204	0.00786769	0.00736097	0.0514287	0.0490627
chr6	7226561	7226656	7031136	0	+	0.473684	(0.455,0.49]	chr6	538725	2	CDS	CDS:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.27152	3.1459600000000005	4.0204	0.00786769	0.00736097	0.0514287	0.0490627
chr19	38382116	38382174	17320756	0	+	0.534483	(0.53,0.59]	chr19	1433581	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592035.5:ENST00000590331.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	85	2	2.38627	3.14594	3.90561	0.00217924	4.56032e-7	0.0208941	2.04658e-5
chr4	77034904	77035002	4900535	0	+	0.418367	(0.39,0.42]	chr4	403559	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	2.48556	3.145895	3.80623	0.00384158	7.67155e-6	0.0320512	2.20857e-4
chr18	77973265	77973365	17184258	0	-	0.52	(0.49,0.53]	chr18	1410246	4	SS3_PROX	SS3_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	2	20	2	2.60116	3.145765	3.69037	0.0226513	0.0056515	0.10505	0.0422191
chr9	98080815	98080888	10381596	0	+	0.452055	(0.42,0.455]	chr9	781927	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NANS	ENSG00000095380.11	ENST00000210444.6:ENST00000461452.1:ENST00000415280.1:ENST00000427646.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	48	2	2.34191	3.1456	3.94929	0.0159091	2.78395e-6	0.0854674	9.49154e-5
chr19	12643888	12643946	17469630	0	-	0.672414	(0.59,1]	chr19	1462696	2	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	RPL10P16:CTD-2192J16.22	ENSG00000178464.6:ENSG00000269242.1	ENST00000325000.4:ENST00000597692.1	protein_coding	nonsense_mediated_decay	protein_coding:processed_pseudogene	nonsense_mediated_decay:processed_pseudogene	28	492	2	3.09772	3.14557	3.19342	4.51164e-6	5.45941e-7	1.56825e-4	2.38863e-5
chr12	93401072	93401172	13019164	0	+	0.3	(0.29,0.33]	chr12	1013446	18	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.63813	3.145195	3.65226	0.00803229	2.31878e-5	0.0528968	5.49766e-4
chr18	46084281	46084363	17103793	0	-	0.378049	(0.36,0.39]	chr18	1404350	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	2.02118	3.1451700000000002	4.26916	0.0251625	9.09682e-6	0.117055	2.53877e-4
chr2	110657035	110657117	2838114	0	-	0.463415	(0.455,0.49]	chr2	253330	1	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	55	2	2.6394	3.1450950000000004	3.65079	3.61776e-4	1.4794e-4	0.00544764	0.00248107
chr1	207337316	207337409	686426	0	+	0.430108	(0.42,0.455]	chr1	69504	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	3.12795	3.1450899999999997	3.16223	4.45084e-4	1.0291e-4	0.00633715	0.00184556
chr1	38838390	38838487	951261	0	-	0.381443	(0.36,0.39]	chr1	100260	3	UTR3	UTR3:EXON_MRNA	RRAGC	ENSG00000116954.8	ENST00000373001.4	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.25794	3.1450699999999996	4.0322	0.00588589	0.00429221	0.0427941	0.0333617
chr12	110350191	110350291	13085953	0	+	0.35	(0.33,0.36]	chr12	1020556	29	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.47163	3.144975	3.81832	0.0135793	0.0129725	0.0745701	0.0724783
chr7	155308851	155308950	8632662	0	+	0.464646	(0.455,0.49]	chr7	659289	6	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	8	75	2	2.37552	3.144765	3.91401	0.00134626	3.58445e-7	0.0145759	1.659e-5
chr1	21823315	21823415	890597	0	-	0.79	(0.59,1]	chr1	92197	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1:ENST00000481644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	81	2	3.08707	3.144725	3.20238	8.79989e-4	4.79306e-4	0.0107294	0.00629006
chrX	1386331	1386421	18925565	0	-	0.644444	(0.59,1]	chrX	1612947	3	UTR3	UTR3:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	20	336	2	2.39203	3.1446199999999997	3.89721	1.55315e-4	7.51355e-8	0.00281143	4.36274e-6
chr1	226987006	226987096	740608	0	+	0.422222	(0.42,0.455]	chr1	74765	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP5-1087E8.6:COQ8A	ENSG00000288674.1:ENSG00000163050.18	ENST00000366779.6:ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5:ENST00000479852.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.43733	3.1444150000000004	3.8515	0.0119089	0.0103896	0.0686664	0.0640167
chr16	57252664	57252761	15683878	0	+	0.453608	(0.42,0.455]	chr16	1247542	4	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8:ENST00000563234.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.43733	3.1444150000000004	3.8515	0.0119089	0.0103896	0.0686664	0.0640167
chrX	53592551	53592628	19077815	0	-	0.454545	(0.42,0.455]	chrX	1622893	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.43733	3.1444150000000004	3.8515	0.0119089	0.0103896	0.0686664	0.0640167
chr15	69452813	69452880	15002359	0	+	0.641791	(0.59,1]	chr15	1179280	1	UTR5	UTR5:EXON_MRNA	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	597	10550	2	2.75023	3.14439	3.53855	9.25899e-7	1.22143e-9	4.14212e-5	1.25481e-7
chr19	5690507	5690600	17210630	0	+	0.645161	(0.59,1]	chr19	1415419	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL36	ENSG00000130255.13	ENST00000579649.5:ENST00000577222.5:ENST00000347512.8:ENST00000582463.5:ENST00000579446.1:ENST00000590786.5:ENST00000394580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	247	2	2.27392	3.1443250000000003	4.01473	4.84184e-4	2.05854e-7	0.00680525	1.04236e-5
chr1	50780012	50780112	1011376	0	-	0.38	(0.36,0.39]	chr1	104789	349	INTRON	INTRON	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	3.10506	3.1442699999999997	3.18348	0.00310315	7.38785e-4	0.0263402	0.00924579
chr19	201572	201662	17414124	0	-	0.555556	(0.53,0.59]	chr19	1451316	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01002	ENSG00000282508.2	ENST00000631858.1:ENST00000633402.1:ENST00000631764.1:ENST00000632747.1:ENST00000633344.1:ENST00000631412.1:ENST00000631484.1:ENST00000631864.1:ENST00000634022.1:ENST00000631988.1:ENST00000631797.1:ENST00000633773.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	46	2	2.89427	3.144215	3.39416	0.00126006	3.98634e-4	0.013837	0.00546791
chr1	181049225	181049312	587285	0	+	0.563218	(0.53,0.59]	chr1	60848	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MR1	ENSG00000153029.16	ENST00000614012.5:ENST00000684662.1:ENST00000434571.7:ENST00000486453.1:ENST00000367580.6:ENST00000683652.1:ENST00000617803.5:ENST00000282990.10:ENST00000367579.7:ENST00000438435.6:ENST00000367578.1:ENST00000684375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.47	3.144195	3.81839	0.0184435	0.0089333	0.0945306	0.0567495
chr11	46382377	46382461	11935302	0	+	0.666667	(0.59,1]	chr11	912486	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDK	ENSG00000110492.16	ENST00000405308.6:ENST00000490240.5:ENST00000359803.7:ENST00000533952.5:ENST00000617138.4:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000481047.1:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	162	2	2.46143	3.14414	3.82685	7.20836e-4	2.82961e-6	0.00906734	9.62519e-5
chr1	182384305	182384404	1401219	0	-	0.545455	(0.53,0.59]	chr1	141690	64	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	42	431	2	3.11256	3.1441	3.17564	3.52212e-8	2.56526e-8	2.53157e-6	1.74629e-6
chr6	170546102	170546184	8091112	0	-	0.402439	(0.39,0.42]	chr6	618040	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	51	2	2.92895	3.144075	3.3592	3.36969e-4	2.70719e-5	0.00475537	6.90257e-4
chr12	16990951	16991046	12756770	0	+	0.463158	(0.455,0.49]	chr12	991478	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P16	ENSG00000213235.3	ENST00000325349.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	86	2	2.94961	3.14386	3.33811	2.75808e-5	9.11151e-6	6.9956e-4	2.54267e-4
chr15	59768649	59768748	14962127	0	+	0.434343	(0.42,0.455]	chr15	1175886	4	EXON_PSEUDO	EXON_PSEUDO	RPS3AP6	ENSG00000234797.5	ENST00000484430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	169	2	3.07652	3.14379	3.21106	1.09216e-6	2.25284e-7	4.75056e-5	1.1217e-5
chr17	63589270	63589368	16317546	0	+	0.561224	(0.53,0.59]	chr17	1323671	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	66	2	2.63536	3.14378	3.6522	6.09389e-4	2.31822e-5	0.00818575	5.49766e-4
chr19	944314	944414	17190116	0	+	0.65	(0.59,1]	chr19	1411218	112	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	1.74555	3.14369	4.54183	0.0444308	0.0070583	0.165174	0.0478044
chr8	144097336	144097430	9650311	0	+	0.606383	(0.59,1]	chr8	731524	1	UTR3	UTR3:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	61	2	2.77109	3.143585	3.51608	0.00331425	0.00108676	0.0285314	0.0118659
chr16	23667342	23667441	15595104	0	+	0.444444	(0.42,0.455]	chr16	1236696	3	UTR3	UTR3:EXON_MRNA	DCTN5	ENSG00000166847.10	ENST00000300087.7:ENST00000563998.5:ENST00000563614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.91373	3.14351	3.37329	0.00892357	0.00136107	0.0567495	0.0141115
chr2	20307977	20308071	2541235	0	-	0.446809	(0.42,0.455]	chr2	228572	1	CDS	CDS:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5:ENST00000442400.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.91373	3.14351	3.37329	0.00892357	0.00136107	0.0567495	0.0141115
chr10	5457386	5457484	10909073	0	+	0.326531	(0.29,0.33]	chr10	830430	5	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	2.52637	3.14323	3.76009	3.08518e-4	1.94568e-4	0.00476847	0.00309
chr7	155298619	155298697	8632552	0	+	0.653846	(0.59,1]	chr7	659263	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000425172.1:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	13	225	2	2.34808	3.1431899999999997	3.9383	4.96648e-4	3.52199e-7	0.00696311	1.639e-5
chr1	155478083	155478182	1309205	0	-	0.454545	(0.42,0.455]	chr1	132425	3	CDS	CDS:UTR3:EXON_MRNA	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.03532	3.1428000000000003	4.25028	0.040947	0.00406761	0.163285	0.032143
chr17	1897465	1897562	16084541	0	+	0.453608	(0.42,0.455]	chr17	1293365	4	UTR3	UTR3:EXON_MRNA	RPA1	ENSG00000132383.12	ENST00000254719.10:ENST00000574049.1:ENST00000573994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.03532	3.1428000000000003	4.25028	0.040947	0.00406761	0.163285	0.032143
chr7	107917923	107917992	8457464	0	+	0.42029	(0.42,0.455]	chr7	646326	1	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.03532	3.1428000000000003	4.25028	0.040947	0.00406761	0.163285	0.032143
chr3	2089118	2089211	3996304	0	-	0.548387	(0.53,0.59]	chr3	336903	3	EXON_SMALL	EXON_SMALL	RN7SKP144	ENSG00000223040.1	ENST00000411108.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	5	33	2	1.84678	3.142705	4.43863	0.0134899	0.00254763	0.0745701	0.0233955
chr9	35068300	35068362	10638205	0	-	0.419355	(0.39,0.42]	chr9	804575	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000681845.1:ENST00000680079.1:ENST00000681386.1:ENST00000679449.1:ENST00000680900.1:ENST00000679392.1:ENST00000680575.1:ENST00000680108.1:ENST00000679901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	3.08949	3.142685	3.19588	0.00321212	1.31388e-4	0.0280721	0.00226623
chr13	46130813	46130875	14009649	0	-	0.322581	(0.29,0.33]	chr13	1098496	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.63813	3.14261	3.64709	0.00803229	3.76873e-4	0.0528968	0.00523508
chr6	35574855	35574953	7676290	0	-	0.326531	(0.29,0.33]	chr6	588423	14	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.63813	3.14261	3.64709	0.00803229	3.76873e-4	0.0528968	0.00523508
chr3	19984885	19984981	3342027	0	+	0.3125	(0.29,0.33]	chr3	293699	12	UTR3	UTR3:EXON_MRNA	RAB5A	ENSG00000144566.11	ENST00000273047.9	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.94844	3.14251	3.33658	0.00217122	1.69227e-4	0.0208941	0.00275464
chr2	42361141	42361161	2616708	0	-	0.35	(0.33,0.36]	chr2	235530	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	COX7A2L	ENSG00000115944.15	ENST00000468711.5:ENST00000378669.5:ENST00000234301.3:ENST00000464443.5:ENST00000607768.1:ENST00000463055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.07736	3.14246	4.20756	0.0442037	0.00386591	0.172163	0.0310764
chr2	96286397	96286484	2790385	0	-	0.597701	(0.59,1]	chr2	248741	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000480615.1:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	74	2	2.21052	3.1422049999999997	4.07389	0.010462	7.9402e-5	0.063428	0.00150391
chr7	100633061	100633123	8952299	0	-	0.725806	(0.59,1]	chr7	684203	2	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473571.1:ENST00000475011.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	76	2	2.94263	3.14217	3.34171	0.00234977	4.44672e-4	0.0222173	0.00598735
chr5	32598960	32599014	5925209	0	+	0.37037	(0.36,0.39]	chr5	464190	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	2.63702	3.1421650000000003	3.64731	0.00212882	2.27851e-5	0.0206577	5.41358e-4
chr12	54404798	54404894	13343825	0	-	0.625	(0.59,1]	chr12	1049802	2	CDS	CDS:UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000435631.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	63	2	3.11647	3.141895	3.16732	0.00535979	5.6576e-4	0.0406564	0.00718071
chr1	207331107	207331201	686362	0	+	0.382979	(0.36,0.39]	chr1	69496	1	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	91	2	2.63804	3.1418850000000003	3.64573	8.58673e-4	5.42816e-8	0.0105583	3.31693e-6
chr7	100097679	100097745	8949672	0	-	0.469697	(0.455,0.49]	chr7	683535	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	80	2	1.7512	3.14163	4.53206	0.00901651	2.46504e-8	0.0572398	1.68927e-6
chr1	154260791	154260891	480052	0	+	0.42	(0.39,0.42]	chr1	49712	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1:ENST00000475373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.34349	3.14162	3.93975	0.0169272	0.0105893	0.0890655	0.0644466
chr17	7514079	7514179	16105319	0	+	0.59	(0.53,0.59]	chr17	1296800	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.2732	3.141575	4.00995	0.00369236	1.99748e-6	0.030936	7.14901e-5
chr1	203703732	203703813	669499	0	+	0.555556	(0.53,0.59]	chr1	67426	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.90978	3.14154	3.3733	0.0529193	0.00857883	0.18423900000000001	0.0552386
chr5	140567117	140567169	6255376	0	+	0.576923	(0.53,0.59]	chr5	487693	1	UTR5	UTR5:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	1	17	2	2.90978	3.14154	3.3733	0.0529193	0.00857883	0.18423900000000001	0.0552386
chr6	31746041	31746141	7116430	0	+	0.58	(0.53,0.59]	chr6	546104	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MSH5:MSH5-SAPCD1	ENSG00000204410.16:ENSG00000255152.8	ENST00000375755.8:ENST00000375750.9:ENST00000482280.1:ENST00000650702.1:ENST00000493662.6:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	17	2	2.90978	3.14154	3.3733	0.0529193	0.00857883	0.18423900000000001	0.0552386
chr14	101925272	101925369	14494886	0	+	0.56701	(0.53,0.59]	chr14	1132932	1	UTR3	UTR3:EXON_MRNA	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000557268.5:ENST00000350249.7:ENST00000334743.9:ENST00000557071.1:ENST00000554147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.45844	3.141255	3.82407	0.0179666	0.00930921	0.0918323	0.0587563
chr17	50392738	50392817	16585226	0	-	0.556962	(0.53,0.59]	chr17	1363138	1	CDS	CDS:EXON_MRNA	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.45844	3.141255	3.82407	0.0179666	0.00930921	0.0918323	0.0587563
chr3	184302369	184302448	3949019	0	+	0.544304	(0.53,0.59]	chr3	332305	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000417952.5:ENST00000310118.9:ENST00000445558.6:ENST00000439383.5:ENST00000435761.5:ENST00000463602.1:ENST00000485937.1:ENST00000491149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.45844	3.141255	3.82407	0.0179666	0.00930921	0.0918323	0.0587563
chr8	140516391	140516486	9641881	0	+	0.473684	(0.455,0.49]	chr8	730104	13	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.46624	3.14124	3.81624	0.0094145	1.48205e-4	0.0592633	0.00269793
chr9	128185546	128185622	10863911	0	-	0.578947	(0.53,0.59]	chr9	823442	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	144	2	2.46393	3.14106	3.81819	4.31686e-4	1.688e-8	0.00622232	1.21979e-6
chr6	16147649	16147749	7067255	0	+	0.43	(0.42,0.455]	chr6	540868	10	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	2.32666	3.14102	3.95538	9.50599e-4	6.68846e-5	0.0107235	0.00142352
chr7	150949508	150949602	9128649	0	-	0.37234	(0.36,0.39]	chr7	697467	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	214	2	2.91021	3.1405450000000004	3.37088	6.81308e-7	5.86188e-9	3.21089e-5	4.9055e-7
chr5	171407745	171407774	6384399	0	+	0.482759	(0.455,0.49]	chr5	495839	1	CDS	CDS:UTR3:EXON_MRNA	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	2.84079	3.1405250000000002	3.44026	0.00201021	8.71641e-5	0.0190112	0.00177086
chr8	70587105	70587176	9881413	0	-	0.422535	(0.42,0.455]	chr8	746932	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	76	2	3.08182	3.140475	3.19913	6.80627e-4	2.67879e-6	0.00876781	9.19863e-5
chrX	65739728	65739793	18716362	0	+	0.538462	(0.53,0.59]	chrX	1596883	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.8006	3.140255	3.47991	0.00233666	6.7738e-5	0.0221314	0.0013157
chr1	206653459	206653559	682602	0	+	0.41	(0.39,0.42]	chr1	68980	46	UTR3	UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000489878.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	1.99911	3.140195	4.28128	0.0477207	0.00342611	0.17993	0.0283456
chr11	77665337	77665435	12473788	0	-	0.408163	(0.39,0.42]	chr11	970340	55	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.99911	3.140195	4.28128	0.0477207	0.00342611	0.17993	0.0283456
chr1	179863689	179863788	1394830	0	-	0.393939	(0.39,0.42]	chr1	141314	48	UTR3	UTR3:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.13132	3.14009	4.14886	0.02908	0.00415881	0.127648	0.0325842
chr2	47379902	47379969	1784420	0	+	0.41791	(0.39,0.42]	chr2	172419	3	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.71912	3.140045	3.56097	0.0163125	6.12149e-4	0.0866586	0.00818575
chr2	60926425	60926524	1840228	0	+	0.414141	(0.39,0.42]	chr2	174789	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	REL:RP11-373L24.1	ENSG00000162924.15:ENSG00000267520.2	ENST00000295025.12:ENST00000394479.4:ENST00000589496.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	22	2	2.71912	3.140045	3.56097	0.0163125	6.12149e-4	0.0866586	0.00818575
chr19	10291511	10291611	17224701	0	+	0.73	(0.59,1]	chr19	1418535	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586004.1:ENST00000587398.1:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	74	2	2.78953	3.1398650000000004	3.4902	0.00130379	9.28839e-4	0.0142445	0.0105151
chr12	56104536	56104603	12897997	0	+	0.761194	(0.59,1]	chr12	1004120	1	UTR5	UTR5:EXON_MRNA:INTRON	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.01575	3.139645	4.26354	0.0201728	0.0134233	0.0978331	0.0743429
chr12	56112822	56112888	12898093	0	+	0.5	(0.49,0.53]	chr12	1004171	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.69746	3.139635	3.58181	0.00380414	4.83779e-6	0.0317723	1.51238e-4
chr2	10793095	10793148	2510823	0	-	0.566038	(0.53,0.59]	chr2	226708	1	CDS	CDS:EXON_MRNA	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	7	89	2	2.21316	3.139575	4.06599	0.00482336	1.24942e-7	0.0371856	6.76445e-6
chr11	47582087	47582150	11940523	0	+	0.47619	(0.455,0.49]	chr11	913287	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000263774.9:ENST00000524568.1:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2:ENST00000525378.5:ENST00000525212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	32	2	2.40664	3.1394849999999996	3.87233	0.0123662	1.08465e-4	0.0705839	0.00193256
chr17	82582740	82582837	16384389	0	+	0.474227	(0.455,0.49]	chr17	1332721	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2:ENST00000571160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.40664	3.1394849999999996	3.87233	0.0123662	1.08465e-4	0.0705839	0.00193256
chr11	126264457	126264539	12645150	0	-	0.609756	(0.59,1]	chr11	981832	2	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000532268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	30	2	2.04362	3.1394599999999997	4.2353	0.036186	0.0165254	0.145024	0.0873033
chr6	36231600	36231699	7133199	0	+	0.616162	(0.59,1]	chr6	549421	11	UTR3	UTR3:EXON_MRNA	BRPF3	ENSG00000096070.19	ENST00000357641.10:ENST00000339717.11:ENST00000449261.6:ENST00000534694.5:ENST00000441123.1:ENST00000441730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	30	2	2.04362	3.1394599999999997	4.2353	0.036186	0.0165254	0.145024	0.0873033
chr12	112508020	112508120	13095560	0	+	0.37	(0.36,0.39]	chr12	1021682	23	UTR3	UTR3:EXON_MRNA	PTPN11	ENSG00000179295.18	ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	3.00115	3.13923	3.27731	0.0012486	1.04905e-5	0.0137762	2.87912e-4
chr19	34196633	34196698	17298757	0	+	0.492308	(0.49,0.53]	chr19	1429664	1	CDS	CDS:UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.26641	3.1390599999999997	4.01171	0.0190546	4.88513e-5	0.093872	0.00100497
chr10	84144945	84145016	11164544	0	+	0.492958	(0.49,0.53]	chr10	848139	2	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	2.24777	3.139055	4.03034	0.00238252	4.26396e-5	0.0217	9.97006e-4
chr11	204012	204112	12225504	0	-	0.58	(0.53,0.59]	chr11	943038	12	UTR3	UTR3:EXON_MRNA:INTRON	BET1L	ENSG00000177951.17	ENST00000410108.5:ENST00000325147.13:ENST00000382762.7	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.47	3.13903	3.80806	0.0089333	1.65022e-4	0.0567495	0.00269147
chr1	65635133	65635231	253672	0	+	0.244898	[0,0.29]	chr1	28907	21	UTR3	UTR3:EXON_MRNA:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.99212	3.138975	3.28583	0.0069187	0.00346525	0.0473262	0.0293796
chr1	36289675	36289764	141571	0	+	0.494382	(0.49,0.53]	chr1	17562	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr1	155964987	155965054	1312607	0	-	0.492537	(0.49,0.53]	chr1	132975	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGEF2	ENSG00000116584.20	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000470874.5:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr1	203682741	203682833	669283	0	+	0.51087	(0.49,0.53]	chr1	67392	1	UTR5	UTR5:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr17	44397268	44397368	16558219	0	-	0.5	(0.49,0.53]	chr17	1359519	21	UTR3	UTR3:EXON_MRNA	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr19	14388759	14388818	17242306	0	+	0.525424	(0.49,0.53]	chr19	1421789	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADGRE5	ENSG00000123146.20	ENST00000587728.5:ENST00000358600.7:ENST00000587535.3:ENST00000586517.5:ENST00000587606.5:ENST00000591080.4:ENST00000357355.7:ENST00000242786.6:ENST00000592261.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr20	25863715	25863810	17936201	0	-	0.526316	(0.49,0.53]	chr20	1518560	6	INTRON	INTRON	FAM182B	ENSG00000175170.16	ENST00000478164.1:ENST00000662978.1:ENST00000657325.1:ENST00000485279.2:ENST00000582267.5:ENST00000661999.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr5	154937104	154937185	6930560	0	-	0.506173	(0.49,0.53]	chr5	530791	2	CDS	CDS:EXON_MRNA	GEMIN5	ENSG00000082516.9	ENST00000285873.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr7	140459006	140459081	9108048	0	-	0.52	(0.49,0.53]	chr7	695078	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5:ENST00000480552.5:ENST00000496169.5:ENST00000443720.6:ENST00000471104.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.38097	3.1388350000000003	3.8967	0.0425419	0.0128791	0.167547	0.0725185
chr11	130143642	130143740	12207132	0	+	0.22449	[0,0.29]	chr11	942093	3	UTR3	UTR3:EXON_MRNA	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000338167.10:ENST00000528499.5:ENST00000263574.9:ENST00000345598.9:ENST00000278756.7:ENST00000525604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	42	2	1.92461	3.138655	4.3527	0.00328504	9.58099e-6	0.027506	2.93255e-4
chr19	55388013	55388064	17396178	0	+	0.627451	(0.59,1]	chr19	1448681	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RPL28:MIR6805	ENSG00000108107.15:ENSG00000284029.1	ENST00000344063.7:ENST00000558815.5:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000615055.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	34	592	2	2.83352	3.1386450000000004	3.44377	4.36776e-6	1.27211e-7	1.52262e-4	6.8713e-6
chr5	38938018	38938118	6544658	0	-	0.27	[0,0.29]	chr5	507042	2	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.99144	3.138635	3.28583	0.00346525	0.00112713	0.0293796	0.0122637
chr5	66029538	66029637	6005595	0	+	0.464646	(0.455,0.49]	chr5	470459	8	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.89975	3.13858	3.37741	3.94125e-4	1.27402e-4	0.00541075	0.00241206
chr6	136275531	136275616	7982474	0	-	0.411765	(0.39,0.42]	chr6	610349	1	CDS	CDS:UTR3:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5:ENST00000533621.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	3.0503	3.1384600000000002	3.22662	0.00570576	0.00257296	0.0424438	0.0229363
chr6	31667867	31667918	7116062	0	+	0.392157	(0.39,0.42]	chr6	545963	1	CDS	CDS:EXON_MRNA	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000465481.6:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	54	2	1.50045	3.138405	4.77636	0.0335886	2.28159e-7	0.1408	1.13101e-5
chr7	121296348	121296447	8496833	0	+	0.282828	[0,0.29]	chr7	648451	8	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	9	55	2	2.3698	3.1383650000000003	3.90693	0.00179967	3.7381e-7	0.0183797	1.72416e-5
chr2	69938482	69938581	1878430	0	+	0.373737	(0.36,0.39]	chr2	177393	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.69035	3.13836	3.58637	0.00123789	5.84377e-4	0.013161	0.00793559
chr19	55486856	55486956	17396440	0	+	0.67	(0.59,1]	chr19	1448724	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAT14	ENSG00000090971.5	ENST00000205194.5:ENST00000592719.1:ENST00000587400.1:ENST00000588985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.84944	3.13795	3.42646	0.0128238	1.57704e-4	0.0719798	0.00261303
chr20	36653324	36653421	17957211	0	-	0.494845	(0.49,0.53]	chr20	1521497	17	UTR3	UTR3:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6:ENST00000373773.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.38683	3.13785	3.88887	0.012654	9.98984e-5	0.0718207	0.00180257
chr16	23690215	23690291	15595349	0	+	0.473684	(0.455,0.49]	chr16	1236752	3	UTR3	UTR3:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.27492	3.1378049999999997	4.00069	0.0193827	5.13615e-5	0.0943643	0.00104999
chr6	17615323	17615420	7618872	0	-	0.268041	[0,0.29]	chr6	580511	4	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	11	66	2	3.08039	3.137765	3.19514	4.23945e-5	2.83086e-6	9.93612e-4	9.62519e-5
chr11	67399088	67399163	12427598	0	-	0.653333	(0.59,1]	chr11	965293	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6:ENST00000358239.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr17	29293682	29293782	16491209	0	-	0.7	(0.59,1]	chr17	1348898	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr21	43982892	43982992	18137641	0	+	0.67	(0.59,1]	chr21	1538560	6	UTR3	UTR3:EXON_MRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr22	15721728	15721826	18284198	0	+	0.612245	(0.59,1]	chr22	1551468	2	EXON_PSEUDO	EXON_PSEUDO	LA16c-3G11.7	ENSG00000241838.3	ENST00000417657.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr3	52529149	52529225	4183429	0	-	0.592105	(0.59,1]	chr3	352917	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	NT5DC2	ENSG00000168268.11	ENST00000307076.8:ENST00000422318.7:ENST00000492555.5:ENST00000459839.5:ENST00000489316.5:ENST00000471522.5:ENST00000487779.5:ENST00000490681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr4	2931374	2931465	5284957	0	-	0.681319	(0.59,1]	chr4	425636	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MFSD10	ENSG00000109736.15	ENST00000514800.5:ENST00000514031.5:ENST00000355443.9:ENST00000329687.8:ENST00000503596.5:ENST00000508221.5:ENST00000507272.5:ENST00000507555.1:ENST00000508276.1:ENST00000512781.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr5	140568144	140568239	6255387	0	+	0.631579	(0.59,1]	chr5	487697	1	UTR3	UTR3:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr6	52277066	52277132	7736723	0	-	0.651515	(0.59,1]	chr6	593731	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr8	96261901	96261970	9498536	0	+	0.652174	(0.59,1]	chr8	722426	1	UTR5	UTR5:EXON_MRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000517557.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.28778	3.137645	3.98751	0.0556537	0.0301044	0.191528	0.129773
chr5	178207093	178207159	6411550	0	+	0.393939	(0.39,0.42]	chr5	498712	1	CDS	CDS:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.82591	3.13757	3.44923	0.00105208	2.09867e-4	0.0123035	0.00327655
chr5	140567753	140567850	6255383	0	+	0.546392	(0.53,0.59]	chr5	487695	6	CDS	CDS:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	1.96733	3.1375450000000003	4.30776	0.022694	0.00407289	0.105117	0.0324137
chr2	173955163	173955260	3020155	0	-	0.42268	(0.42,0.455]	chr2	267378	4	CDS	CDS:EXON_MRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.57051	3.13751	3.70451	0.0265466	2.72131e-4	0.120071	0.00404713
chr6	43018144	43018216	7154577	0	+	0.430556	(0.42,0.455]	chr6	552400	1	CDS	CDS:EXON_MRNA	KLHDC3	ENSG00000124702.18	ENST00000244670.12:ENST00000326974.9:ENST00000332245.9	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.57051	3.13751	3.70451	0.0265466	2.72131e-4	0.120071	0.00404713
chrX	68784785	68784878	18721569	0	+	0.451613	(0.42,0.455]	chrX	1597317	7	EXON_PSEUDO	EXON_PSEUDO	SERBP1P1	ENSG00000213740.2	ENST00000396021.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	26	2	2.57051	3.13751	3.70451	0.0265466	2.72131e-4	0.120071	0.00404713
chr15	84716075	84716171	15421328	0	-	0.708333	(0.59,1]	chr15	1219657	1	UTR5	UTR5:EXON_MRNA	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.63214	3.137275	3.64241	0.005622	9.04232e-6	0.0421873	2.53593e-4
chr5	87407975	87408045	6681522	0	-	0.414286	(0.39,0.42]	chr5	515389	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000505587.5:ENST00000508855.5:ENST00000256897.9:ENST00000504878.1:ENST00000504115.1:ENST00000513499.5:ENST00000510020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	38	2	2.18025	3.13722	4.09419	0.00587938	2.95839e-5	0.0424857	7.34143e-4
chr14	23126086	23126185	14529504	0	-	0.474747	(0.455,0.49]	chr14	1138639	9	UTR3	UTR3:EXON_MRNA	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	73	2	3.10386	3.13721	3.17056	4.1243e-4	5.58119e-6	0.00604953	1.69644e-4
chr5	37299447	37299507	6540025	0	-	0.433333	(0.42,0.455]	chr5	506517	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.36247	3.13672	3.91097	0.0462889	8.75299e-5	0.176878	0.0016272
chr1	148330332	148330394	457670	0	+	0.403226	(0.39,0.42]	chr1	45567	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS5_PROX:INTRON	RP11-495P10.3:Y_RNA	ENSG00000224481.3:ENSG00000252744.1	ENST00000648583.1:ENST00000654570.1:ENST00000452996.1:ENST00000662680.1:ENST00000516935.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	13	107	2	3.11417	3.13666	3.15915	2.84183e-5	7.70621e-7	7.14297e-4	3.20754e-5
chr1	34855203	34855302	935301	0	-	0.444444	(0.42,0.455]	chr1	98244	50	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SMIM12	ENSG00000163866.9	ENST00000426886.1:ENST00000521580.3:ENST00000446026.1:ENST00000456842.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.57051	3.1366199999999997	3.70273	0.0265466	0.0215502	0.120071	0.102904
chr1	171587148	171587221	537578	0	+	0.438356	(0.42,0.455]	chr1	57728	3	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1:ENST00000498596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.57051	3.1366199999999997	3.70273	0.0265466	0.0215502	0.120071	0.102904
chr15	91007869	91007964	15439599	0	-	0.452632	(0.42,0.455]	chr15	1221488	1	CDS	CDS:UTR3:EXON_MRNA	AC068831.18:VPS33B	ENSG00000284946.1:ENSG00000184056.15	ENST00000643536.1:ENST00000647331.1:ENST00000333371.8:ENST00000535906.1:ENST00000574755.5:ENST00000556096.6:ENST00000554264.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.57051	3.1366199999999997	3.70273	0.0265466	0.0215502	0.120071	0.102904
chr3	19975682	19975752	3341930	0	+	0.428571	(0.42,0.455]	chr3	293681	2	CDS	CDS:UTR3:EXON_MRNA	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000412966.5:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5:ENST00000473608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.57051	3.1366199999999997	3.70273	0.0265466	0.0215502	0.120071	0.102904
chr6	135185902	135185961	7414744	0	+	0.423729	(0.42,0.455]	chr6	568251	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000420123.6:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.57051	3.1366199999999997	3.70273	0.0265466	0.0215502	0.120071	0.102904
chr7	157416960	157417055	8637614	0	+	0.431579	(0.42,0.455]	chr7	659864	10	UTR3	UTR3:EXON_MRNA	DNAJB6	ENSG00000105993.15	ENST00000262177.9:ENST00000459889.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.57051	3.1366199999999997	3.70273	0.0265466	0.0215502	0.120071	0.102904
chr19	15835947	15836042	17246596	0	+	0.505263	(0.49,0.53]	chr19	1422765	13	EXON_LNCRNA	EXON_LNCRNA	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000655708.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1	lncRNA	lncRNA	lncRNA	lncRNA	5	51	2	3.10321	3.136535	3.16986	3.95698e-4	1.1948e-4	0.00587341	0.00208475
chr1	110899285	110899376	405636	0	+	0.527473	(0.49,0.53]	chr1	39842	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000476408.1:ENST00000497404.1:ENST00000464329.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	145	2	2.87036	3.1364549999999998	3.40255	5.98086e-6	2.1589e-7	1.80005e-4	1.21611e-5
chr11	65021937	65022019	11981866	0	+	0.682927	(0.59,1]	chr11	919691	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARL2:ARL2-SNX15	ENSG00000213465.8:ENSG00000273003.1	ENST00000246747.9:ENST00000529384.5:ENST00000301886.3:ENST00000533729.1:ENST00000529254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.53147	3.136155	3.74084	0.00807544	4.03818e-4	0.0531324	0.00550292
chr14	33950652	33950752	14572349	0	-	0.57	(0.53,0.59]	chr14	1141883	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EGLN3	ENSG00000129521.15	ENST00000250457.9:ENST00000553215.5:ENST00000487915.6:ENST00000547327.2	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.65894	3.1359399999999997	3.61294	0.0310038	0.0193255	0.130016	0.0943643
chr16	69754659	69754726	15995177	0	-	0.552239	(0.53,0.59]	chr16	1284288	2	CDS	CDS:EXON_MRNA	NOB1	ENSG00000141101.13	ENST00000268802.10:ENST00000569871.5:ENST00000564620.5:ENST00000563055.1:ENST00000562416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.65894	3.1359399999999997	3.61294	0.0310038	0.0193255	0.130016	0.0943643
chr19	41419134	41419215	17335212	0	+	0.555556	(0.53,0.59]	chr19	1436917	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CTC-435M10.3:BCKDHA	ENSG00000255730.5:ENSG00000248098.12	ENST00000540732.3:ENST00000538423.5:ENST00000269980.7:ENST00000542943.5:ENST00000457836.6:ENST00000541315.1:ENST00000535632.5:ENST00000545787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	16	2	2.65894	3.1359399999999997	3.61294	0.0310038	0.0193255	0.130016	0.0943643
chrX	115703932	115704026	18834862	0	+	0.553191	(0.53,0.59]	chrX	1604659	13	EXON_PSEUDO	EXON_PSEUDO	EEF1GP5	ENSG00000234785.1	ENST00000434365.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.65894	3.1359399999999997	3.61294	0.0310038	0.0193255	0.130016	0.0943643
chr1	96447226	96447325	366399	0	+	0.454545	(0.42,0.455]	chr1	35865	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	168	2	2.82012	3.13592	3.45172	8.63391e-6	2.30126e-8	2.67209e-4	1.59489e-6
chr11	18262443	18262536	11830872	0	+	0.451613	(0.42,0.455]	chr11	905856	6	EXON_PSEUDO	EXON_PSEUDO	ST13P5	ENSG00000212789.4	ENST00000526214.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr18	62044756	62044856	17152126	0	-	0.45	(0.42,0.455]	chr18	1407914	37	UTR3	UTR3:EXON_MRNA:INTRON	PIGN	ENSG00000197563.11	ENST00000639600.1:ENST00000640252.2:ENST00000639372.1:ENST00000639912.1:ENST00000640876.1:ENST00000357637.10:ENST00000640145.1:ENST00000638977.1:ENST00000640170.1:ENST00000638167.1:ENST00000640540.1:ENST00000639342.1:ENST00000639491.1:ENST00000638435.1:ENST00000639681.1:ENST00000400334.7:ENST00000638936.1:ENST00000639758.1:ENST00000639902.1:ENST00000638858.1:ENST00000638369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr2	63885588	63885679	1850642	0	+	0.43956	(0.42,0.455]	chr2	175541	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UGP2	ENSG00000169764.16	ENST00000394417.7:ENST00000467648.6:ENST00000613823.2:ENST00000487469.5:ENST00000676870.1:ENST00000678298.1:ENST00000677841.1:ENST00000676780.1:ENST00000678951.1:ENST00000678974.1:ENST00000475550.5:ENST00000337130.10:ENST00000445915.6:ENST00000487042.5:ENST00000491621.5:ENST00000679256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr2	135510844	135510944	2897172	0	-	0.44	(0.42,0.455]	chr2	258367	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	ZRANB3:G3BP1P1	ENSG00000121988.18:ENSG00000235651.1	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1:ENST00000413279.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr22	41499788	41499862	18380764	0	+	0.432432	(0.42,0.455]	chr22	1564524	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000471094.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr3	36827982	36828079	4116838	0	-	0.453608	(0.42,0.455]	chr3	344124	13	UTR3	UTR3:EXON_MRNA	TRANK1	ENSG00000168016.15	ENST00000645898.2:ENST00000429976.5:ENST00000646897.1:ENST00000643881.1:ENST00000646436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr7	96703934	96704033	8939872	0	-	0.424242	(0.42,0.455]	chr7	682166	67	INTRON	INTRON	SEM1	ENSG00000127922.9	ENST00000466986.5:ENST00000618105.4:ENST00000619259.4:ENST00000617133.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chrX	152862595	152862659	18912942	0	+	0.4375	(0.42,0.455]	chrX	1610600	1	CDS	CDS:EXON_MRNA	NSDHL	ENSG00000147383.11	ENST00000440023.5:ENST00000432467.1:ENST00000370274.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.36247	3.13584	3.90921	0.0462889	0.0121657	0.176878	0.0701019
chr6	157944006	157944103	7516759	0	+	0.505155	(0.49,0.53]	chr6	573600	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	25	2	3.04107	3.1355649999999997	3.23006	0.00533879	0.00253719	0.0392268	0.0233955
chr11	74253609	74253708	12016979	0	+	0.515152	(0.49,0.53]	chr11	926524	2	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	2.18061	3.1355500000000003	4.09049	0.00136434	2.9452e-5	0.0141442	7.32348e-4
chr1	53828085	53828173	1026184	0	-	0.443182	(0.42,0.455]	chr1	106431	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDC1	ENSG00000058804.12	ENST00000371429.4:ENST00000480952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	3.10874	3.135485	3.16223	5.40397e-4	4.45084e-4	0.00688813	0.00633715
chr1	54210038	54210131	200404	0	+	0.365591	(0.36,0.39]	chr1	25592	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL37	ENSG00000116221.15	ENST00000487096.5:ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000490670.1:ENST00000398219.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	71	2	2.985	3.135325	3.28565	1.07075e-4	3.2454e-6	0.00206452	1.07876e-4
chr17	1679350	1679410	16401599	0	-	0.583333	(0.53,0.59]	chr17	1334955	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.65894	3.135135	3.61133	0.0193255	4.55298e-4	0.0943643	0.00608573
chr19	10921851	10921945	17228529	0	+	0.585106	(0.53,0.59]	chr19	1419257	2	UTR3	UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000344150.8:ENST00000586221.5:ENST00000586298.1:ENST00000592516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.65894	3.135135	3.61133	0.0193255	4.55298e-4	0.0943643	0.00608573
chr12	53299268	53299345	12885768	0	+	0.558442	(0.53,0.59]	chr12	1002265	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PFDN5:RP11-680A11.7	ENSG00000123349.15:ENSG00000288663.1	ENST00000551018.5:ENST00000550069.2:ENST00000676527.1:ENST00000677326.1:ENST00000549759.2:ENST00000677982.1:ENST00000628881.2:ENST00000679196.1:ENST00000676940.1:ENST00000676632.1:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000677184.1:ENST00000552742.6:ENST00000677712.1:ENST00000678985.1:ENST00000552548.6:ENST00000550964.6:ENST00000548984.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	8	90	2	2.38903	3.1351	3.88117	0.00113683	5.52702e-7	0.0129678	2.41518e-5
chr1	156139295	156139390	486175	0	+	0.378947	(0.36,0.39]	chr1	51303	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368300.9:ENST00000675881.1:ENST00000368299.7:ENST00000448611.6:ENST00000473598.6:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	40	2	2.00093	3.135045	4.26916	0.00996106	9.09682e-6	0.0621728	2.53877e-4
chr4	56448766	56448823	4848613	0	+	0.473684	(0.455,0.49]	chr4	399447	2	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3:ENST00000508554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	2.06803	3.1349599999999995	4.20189	0.00562101	0.00397662	0.041036	0.0322851
chr1	167541703	167541802	1347833	0	-	0.373737	(0.36,0.39]	chr1	137992	8	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.84089	3.1349	3.42891	0.0128123	9.14064e-5	0.0719798	0.0016849
chr17	41758458	41758518	16543014	0	-	0.616667	(0.59,1]	chr17	1356275	2	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000585793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.42381	3.13469	3.84557	0.0410704	0.00452614	0.163285	0.0346018
chr1	32365725	32365825	922259	0	-	0.51	(0.49,0.53]	chr1	97129	12	UTR3	UTR3:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	3.11892	3.1346800000000004	3.15044	0.00398244	4.32676e-4	0.0322851	0.00583708
chr12	104757514	104757608	13062188	0	+	0.510638	(0.49,0.53]	chr12	1017752	7	CDS	CDS:EXON_MRNA	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000549260.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.11892	3.1346800000000004	3.15044	0.00398244	4.32676e-4	0.0322851	0.00583708
chr2	128173780	128173859	2060334	0	+	0.518987	(0.49,0.53]	chr2	193330	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	3.11892	3.1346800000000004	3.15044	0.00398244	4.32676e-4	0.0322851	0.00583708
chrX	47212423	47212512	18686895	0	+	0.516854	(0.49,0.53]	chrX	1593261	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	3.11892	3.1346800000000004	3.15044	0.00398244	4.32676e-4	0.0322851	0.00583708
chrX	153693040	153693107	18915611	0	+	0.58209	(0.53,0.59]	chrX	1611182	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	151	2	2.88207	3.134665	3.38726	1.63132e-5	3.18411e-7	4.53955e-4	1.50505e-5
chr19	45517362	45517462	17354000	0	+	0.54	(0.53,0.59]	chr19	1439945	3	SS3_PROX	SS3_PROX:INTRON	VASP	ENSG00000125753.14	ENST00000589627.1:ENST00000245932.11:ENST00000592139.1:ENST00000590603.1:ENST00000586014.5:ENST00000586619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.27113	3.1346600000000002	3.99819	0.0178853	0.0111308	0.0918323	0.0665375
chr10	32923584	32923662	11444126	0	-	0.333333	(0.33,0.36]	chr10	872665	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.54538	3.1345150000000004	3.72365	0.00259294	3.19155e-4	0.0229695	0.00491578
chr14	75132834	75132932	14709054	0	-	0.408163	(0.39,0.42]	chr14	1152525	15	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.18155	3.134285	4.08702	0.0283931	3.01232e-5	0.127654	6.78876e-4
chr19	10317261	10317357	17459302	0	-	0.520833	(0.49,0.53]	chr19	1460720	12	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	53	2	2.74861	3.1342100000000004	3.51981	6.88328e-4	1.43966e-4	0.00876781	0.00242438
chr17	59660489	59660588	16295224	0	+	0.484848	(0.455,0.49]	chr17	1321641	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	125	2	3.02846	3.134195	3.23993	2.28693e-5	2.62293e-7	5.98594e-4	1.27527e-5
chr6	31734208	31734263	7662149	0	-	0.563636	(0.53,0.59]	chr6	585140	2	CDS	CDS:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	7	78	2	3.06709	3.134115	3.20114	6.63641e-5	4.61614e-5	0.00129398	0.00106317
chr6	149793608	149793669	7481952	0	+	0.442623	(0.42,0.455]	chr6	571786	2	CDS	CDS:UTR3:EXON_MRNA	PCMT1	ENSG00000120265.19	ENST00000367384.7:ENST00000367378.6:ENST00000484601.6:ENST00000367380.9:ENST00000544496.5:ENST00000649295.1:ENST00000464889.7:ENST00000486585.2:ENST00000495487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	188	2	2.46093	3.1341	3.80727	1.24239e-4	6.81636e-10	0.0023591	7.44554e-8
chr1	27851013	27851108	114791	0	+	0.336842	(0.33,0.36]	chr1	13956	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000486634.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.13965	3.1340250000000003	4.1284	0.0297101	0.00407303	0.129986	0.0324137
chr2	231072263	231072339	2423187	0	+	0.355263	(0.33,0.36]	chr2	218300	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000678837.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000444007.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.13965	3.1340250000000003	4.1284	0.0297101	0.00407303	0.129986	0.0324137
chr17	28939527	28939626	16488941	0	-	0.444444	(0.42,0.455]	chr17	1348482	114	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	36	2	2.7523	3.13384	3.51538	0.0153283	5.28826e-5	0.0828908	0.00107799
chr19	41861111	41861168	17336792	0	+	0.578947	(0.53,0.59]	chr19	1437260	1	CDS	CDS:UTR5:EXON_MRNA	RPS19	ENSG00000105372.8	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000598466.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	127	2	2.84621	3.133715	3.42122	2.12343e-5	1.28206e-6	5.08042e-4	5.45614e-5
chr10	22535244	22535341	11411102	0	-	0.319588	(0.29,0.33]	chr10	869854	5	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	7	49	2	2.61288	3.133705	3.65453	0.00138819	2.84967e-6	0.0149724	9.64791e-5
chr1	201871160	201871243	661448	0	+	0.542169	(0.53,0.59]	chr1	66305	1	CDS	CDS:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr10	95643062	95643134	11633253	0	-	0.569444	(0.53,0.59]	chr10	886070	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000483788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr11	69303411	69303510	12434044	0	-	0.555556	(0.53,0.59]	chr11	966467	1	EXON_PSEUDO	EXON_PSEUDO	IFITM9P	ENSG00000213275.2	ENST00000535743.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr12	120137634	120137724	13579095	0	-	0.588889	(0.53,0.59]	chr12	1068564	2	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr16	18418391	18418484	15875436	0	-	0.548387	(0.53,0.59]	chr16	1269016	1	CDS	CDS:UTR3:EXON_MRNA	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000620440.4:ENST00000381474.7:ENST00000564991.5:ENST00000569526.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr17	31352256	31352335	16194457	0	+	0.531646	(0.53,0.59]	chr17	1307477	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NF1	ENSG00000196712.18	ENST00000356175.7:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000471572.6:ENST00000581790.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr17	72849718	72849804	16671318	0	-	0.55814	(0.53,0.59]	chr17	1371775	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC39A11	ENSG00000133195.11	ENST00000255559.7:ENST00000542342.6:ENST00000582769.5:ENST00000579319.1:ENST00000583715.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr17	74768954	74769054	16351707	0	+	0.58	(0.53,0.59]	chr17	1326678	4	UTR3	UTR3:EXON_MRNA	SLC9A3R1	ENSG00000109062.12	ENST00000262613.10:ENST00000413388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr5	43649227	43649308	5960400	0	+	0.530864	(0.53,0.59]	chr5	467086	2	CDS	CDS:UTR3:EXON_MRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr5	159951132	159951223	6945499	0	-	0.538462	(0.53,0.59]	chr5	531788	8	EXON_PSEUDO	EXON_PSEUDO	GAPDHP40	ENSG00000248626.1	ENST00000505218.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr9	128533760	128533855	10479758	0	+	0.589474	(0.53,0.59]	chr9	790280	1	CDS	CDS:UTR3:EXON_MRNA	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000309971.9:ENST00000684139.1:ENST00000372770.4:ENST00000683288.1:ENST00000684210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	16	2	2.64837	3.133465	3.61856	0.0303021	0.0199467	0.129773	0.0984041
chr5	168553281	168553381	6968950	0	-	0.47	(0.455,0.49]	chr5	532791	49	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	PANK3:SLC2A3P1	ENSG00000120137.7:ENSG00000253861.1	ENST00000239231.7:ENST00000519666.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	32	2	3.12843	3.1331499999999997	3.13787	0.00392855	4.66183e-4	0.0322851	0.00616585
chr3	194454324	194454392	4655013	0	-	0.367647	(0.36,0.39]	chr3	384479	2	CDS	CDS:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.56782	3.1330850000000003	3.69835	0.00659672	3.2708e-4	0.0460001	0.00502339
chr16	28101846	28101945	15903530	0	-	0.464646	(0.455,0.49]	chr16	1273226	1	CDS	CDS:EXON_MRNA	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000568065.5:ENST00000569315.1:ENST00000567038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.69053	3.1328899999999997	3.57525	0.0182983	5.24878e-4	0.0925808	0.00677371
chr7	12337176	12337272	8683019	0	-	0.458333	(0.455,0.49]	chr7	663921	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.69053	3.1328899999999997	3.57525	0.0182983	5.24878e-4	0.0925808	0.00677371
chr11	85019389	85019488	12518008	0	-	0.20202	[0,0.29]	chr11	971918	218	INTRON	INTRON	DLG2	ENSG00000150672.18	ENST00000376104.7:ENST00000650630.1:ENST00000527088.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.15488	3.1325899999999995	4.1103	0.0436536	0.00493104	0.170594	0.0366648
chr12	64421392	64421471	12921833	0	+	0.265823	[0,0.29]	chr12	1007032	3	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.15488	3.1325899999999995	4.1103	0.0436536	0.00493104	0.170594	0.0366648
chr2	176337754	176337844	2225168	0	+	0.211111	[0,0.29]	chr2	203312	2	UTR3	UTR3:EXON_MRNA	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.15488	3.1325899999999995	4.1103	0.0436536	0.00493104	0.170594	0.0366648
chr5	66180549	66180648	6006656	0	+	0.282828	[0,0.29]	chr5	470613	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000284041.7:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	12	2	2.15488	3.1325899999999995	4.1103	0.0436536	0.00493104	0.170594	0.0366648
chr1	225919876	225919972	1531279	0	-	0.229167	[0,0.29]	chr1	153169	1	UTR3	UTR3:EXON_MRNA:INTRON	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	2.34935	3.13253	3.91571	0.0016884	1.5798e-4	0.0165476	0.00285004
chr16	68122742	68122837	15714220	0	+	0.547368	(0.53,0.59]	chr16	1250981	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	89	2	2.96156	3.1325000000000003	3.30344	9.05921e-5	9.28103e-6	0.00182947	2.58687e-4
chrX	1386701	1386759	18925569	0	-	0.534483	(0.53,0.59]	chrX	1612949	1	CDS	CDS:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.69635	3.1324899999999998	3.56863	0.00112127	3.93456e-5	0.0128408	8.48445e-4
chr10	32911885	32911964	11444001	0	-	0.341772	(0.33,0.36]	chr10	872642	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.78095	3.1323999999999996	3.48385	0.00388614	9.93473e-6	0.0322851	2.74996e-4
chr9	137114242	137114312	10893182	0	-	0.714286	(0.59,1]	chr9	828382	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DPP7	ENSG00000176978.14	ENST00000371579.7:ENST00000473532.5:ENST00000472306.5:ENST00000485456.5:ENST00000478597.5:ENST00000497375.1:ENST00000473703.1:ENST00000491807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.9228	3.132255	3.34171	0.00981698	0.00234977	0.0612992	0.0222173
chr12	53479442	53479537	12886739	0	+	0.431579	(0.42,0.455]	chr12	1002482	1	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	232	2	2.90436	3.1322099999999997	3.36006	2.59109e-7	4.30487e-8	1.26308e-5	2.9886e-6
chr2	43934753	43934815	2623417	0	-	0.387097	(0.36,0.39]	chr2	236177	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	3.02397	3.13211	3.24025	0.00674398	2.74161e-4	0.0461258	0.00406677
chr1	17044789	17044888	873261	0	-	0.565657	(0.53,0.59]	chr1	89468	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5:ENST00000475506.1:ENST00000463045.2:ENST00000466613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	37	2	2.8006	3.132045	3.46349	0.00233666	9.2216e-4	0.0221314	0.0104432
chr19	49869326	49869424	17607879	0	-	0.561224	(0.53,0.59]	chr19	1484407	4	UTR3	UTR3:EXON_MRNA:INTRON	PNKP:AKT1S1	ENSG00000039650.12:ENSG00000204673.11	ENST00000629179.1:ENST00000391834.6:ENST00000391833.5:ENST00000344175.10:ENST00000391832.7:ENST00000391835.1:ENST00000391831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.8006	3.132045	3.46349	0.00233666	9.2216e-4	0.0221314	0.0104432
chr20	36045911	36046009	17956000	0	-	0.357143	(0.33,0.36]	chr20	1521358	4	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	2.51887	3.131945	3.74502	0.0358636	2.19782e-4	0.147298	0.00339463
chr1	112670329	112670428	411475	0	+	0.272727	[0,0.29]	chr1	40540	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	135	2	3.00825	3.1319299999999997	3.25561	5.31758e-7	7.15489e-8	2.60178e-5	4.19038e-6
chr2	121340461	121340561	2860473	0	-	0.38	(0.36,0.39]	chr2	255378	28	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.93136	3.131885	3.33241	0.00811967	0.00193631	0.0528637	0.0192272
chr3	5179653	5179750	3278255	0	+	0.247423	[0,0.29]	chr3	288772	10	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	3.0256	3.13182	3.23804	4.89672e-4	5.85812e-5	0.00687268	0.00117676
chr17	59694143	59694240	16295599	0	+	0.28866000000000003	[0,0.29]	chr17	1321774	4	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	75	2	3.11247	3.131765	3.15106	1.03761e-5	2.59051e-6	3.10912e-4	8.93771e-5
chr9	135503836	135503934	10510111	0	+	0.571429	(0.53,0.59]	chr9	795602	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS2	ENSG00000122140.11	ENST00000371785.5:ENST00000241600.10:ENST00000488610.5:ENST00000485333.5:ENST00000472852.1:ENST00000453385.1:ENST00000472946.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.2596	3.131765	4.00393	0.0185443	0.0108084	0.0948733	0.064368
chr22	20950820	20950918	18300191	0	+	0.418367	(0.39,0.42]	chr22	1553647	11	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	113	2	2.79424	3.13151	3.46878	6.92361e-6	7.85944e-7	2.04186e-4	3.61591e-5
chr5	133959756	133959844	6843168	0	-	0.465909	(0.455,0.49]	chr5	523549	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	2.52734	3.13131	3.73528	0.00792433	1.49591e-6	0.0523592	5.62205e-5
chr21	45505133	45505205	18145872	0	+	0.736111	(0.59,1]	chr21	1539835	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.5215	3.13117	3.74084	0.032241	4.03818e-4	0.135671	0.00550292
chr16	8892856	8892951	15844368	0	-	0.378947	(0.36,0.39]	chr16	1265410	9	UTR3	UTR3:EXON_MRNA	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.76778	3.131095	3.49441	0.00365703	7.81559e-4	0.0307238	0.00927662
chr13	52642592	52642687	13748709	0	+	0.515789	(0.49,0.53]	chr13	1083046	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-78J21.7:HNRNPA1L2	ENSG00000273784.5:ENSG00000139675.13	ENST00000683187.1:ENST00000357495.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	63	2	1.44609	3.13101	4.81593	0.0289833	1.6567e-7	0.127484	9.74137e-6
chr1	156135953	156136037	486135	0	+	0.690476	(0.59,1]	chr1	51288	1	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	111	2	2.94567	3.1309199999999997	3.31617	3.02114e-4	1.7069e-4	0.00472028	0.00277678
chr6	37173991	37174091	7136293	0	+	0.56	(0.53,0.59]	chr6	549952	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000468243.5:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	53	519	2	2.99112	3.1308100000000003	3.2705	2.87655e-8	2.48324e-8	2.10449e-6	1.70108e-6
chr19	39839114	39839194	17563537	0	-	0.5625	(0.53,0.59]	chr19	1475748	2	CDS	CDS:UTR3:EXON_MRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	139	2	1.82106	3.13079	4.44052	0.00229325	4.78693e-9	0.0210556	4.44837e-7
chr7	2363631	2363695	8096171	0	+	0.4375	(0.42,0.455]	chr7	618867	1	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2:ENST00000463229.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.86513	3.13077	4.39641	0.0357107	4.03242e-6	0.147298	1.29746e-4
chr2	9452966	9453021	1625951	0	+	0.327273	(0.29,0.33]	chr2	161268	2	CDS	CDS:EXON_MRNA	CPSF3	ENSG00000119203.14	ENST00000238112.8:ENST00000460593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.63813	3.130625	3.62312	0.0222826	0.00803229	0.104593	0.0528968
chr13	46127000	46127098	14009610	0	-	0.540816	(0.53,0.59]	chr13	1098488	12	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	9	98	2	2.87405	3.130345	3.38664	6.55401e-5	5.10107e-6	0.00139975	1.57702e-4
chr1	109592740	109592840	399343	0	+	0.29	[0,0.29]	chr1	38901	5	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	9	57	2	3.13014	3.13016	3.13018	2.66868e-4	4.79605e-6	0.0043067	1.50054e-4
chr16	88726876	88726958	16074540	0	-	0.597561	(0.59,1]	chr16	1291692	3	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.47837	3.130125	3.78188	0.00970721	3.33896e-4	0.0608296	0.00472923
chr12	6868925	6868987	12714929	0	+	0.5	(0.49,0.53]	chr12	987134	2	CDS	CDS:UTR5:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000488464.6:ENST00000535434.5:ENST00000493987.5:ENST00000462761.5:ENST00000495834.1	protein_coding	protein_coding	protein_coding	protein_coding	8	77	2	3.00771	3.1300749999999997	3.25244	6.70462e-5	1.25784e-5	0.00142579	3.31924e-4
chr4	170604796	170604890	5795757	0	-	0.361702	(0.36,0.39]	chr4	456293	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AA6P	ENSG00000181359.5	ENST00000325407.4:ENST00000506634.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	11	79	2	2.6862	3.1299099999999997	3.57362	8.18712e-5	1.06281e-6	0.00169784	4.21166e-5
chr2	74462236	74462332	2742890	0	-	0.614583	(0.59,1]	chr2	244411	10	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.32455	3.129905	3.93526	0.0520547	1.599e-4	0.193787	0.00263454
chr7	73441598	73441697	8853475	0	-	0.424242	(0.42,0.455]	chr7	675865	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.63665	3.1299	3.62315	0.0048172	4.234e-4	0.0365653	0.00613535
chr16	88808178	88808278	15807318	0	+	0.66	(0.59,1]	chr16	1258140	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9	protein_coding	protein_coding	protein_coding	protein_coding	5	89	2	1.68783	3.129875	4.57192	0.035259	4.93335e-6	0.146063	1.5336e-4
chr16	1324793	1324889	15486435	0	+	0.416667	(0.39,0.42]	chr16	1225668	1	UTR3	UTR3:EXON_MRNA	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000567383.6:ENST00000403747.6:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000567074.6:ENST00000677314.1:ENST00000679137.1:ENST00000677987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	2.02403	3.1298200000000005	4.23561	0.0111868	1.16386e-5	0.0665375	3.43116e-4
chr11	64764702	64764800	12419179	0	-	0.438776	(0.42,0.455]	chr11	962880	2	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	2.3873	3.129815	3.87233	0.00131117	4.86008e-6	0.0143177	1.51731e-4
chr14	102729275	102729374	14500060	0	+	0.313131	(0.29,0.33]	chr14	1133640	29	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.49936	3.1297249999999996	3.76009	0.00917022	3.08518e-4	0.0580029	0.00476847
chr16	67870913	67871010	15712237	0	+	0.505155	(0.49,0.53]	chr16	1250701	1	UTR3	UTR3:EXON_MRNA	NUTF2	ENSG00000102898.12	ENST00000219169.9:ENST00000569436.6:ENST00000568396.2:ENST00000587481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	2.98555	3.129415	3.27328	2.21441e-4	3.00784e-5	0.00341572	7.44291e-4
chr8	90017204	90017304	9473306	0	+	0.46	(0.455,0.49]	chr8	720719	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1:ENST00000522583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	31	2	2.52734	3.1293800000000003	3.73142	0.00792433	2.35261e-4	0.0523592	0.00356397
chr9	137279763	137279861	10515668	0	+	0.653061	(0.59,1]	chr9	797347	11	CDS	CDS:EXON_MRNA	TOR4A	ENSG00000198113.3	ENST00000357503.3	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.69477	3.129345	3.56392	0.020208	8.86707e-4	0.0978331	0.0101815
chr1	633145	633243	499	0	+	0.469388	(0.455,0.49]	chr1	107	5	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	39	2	3.00871	3.12892	3.24913	0.00239443	2.11527e-4	0.0225356	0.00328766
chr18	21866462	21866562	16779513	0	+	0.45	(0.42,0.455]	chr18	1384234	19	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	2.84743	3.12892	3.41041	2.0116e-4	1.00299e-4	0.0034174	0.00180803
chr5	127524725	127524822	6204749	0	+	0.525773	(0.49,0.53]	chr5	483421	3	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	10	106	2	2.4432	3.1287700000000003	3.81434	8.82833e-4	3.9956e-8	0.0107603	2.54378e-6
chr8	41654954	41655051	9806270	0	-	0.371134	(0.36,0.39]	chr8	741510	19	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.6711	3.128735	3.58637	0.00434596	5.84377e-4	0.0335517	0.00793559
chr17	35726316	35726413	16207526	0	+	0.453608	(0.42,0.455]	chr17	1309154	28	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	53	2	2.812	3.128685	3.44537	2.25472e-4	8.6897e-5	0.00346549	0.00177086
chr15	90918290	90918388	15103744	0	+	0.602041	(0.59,1]	chr15	1188772	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000360468.7:ENST00000557865.5:ENST00000561448.5:ENST00000560147.5:ENST00000557990.1:ENST00000558538.5:ENST00000560926.5:ENST00000559341.5:ENST00000560880.1:ENST00000558374.5:ENST00000559558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	3.08103	3.128595	3.17616	0.00434232	2.20237e-4	0.0339139	0.0034006
chr19	1106539	1106572	17191458	0	+	0.484848	(0.455,0.49]	chr19	1411735	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPX4	ENSG00000167468.18	ENST00000616066.4:ENST00000354171.13:ENST00000589115.6:ENST00000611653.4:ENST00000588919.5:ENST00000622390.4:ENST00000587648.5:ENST00000592940.2:ENST00000585480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	5	47	2	2.76399	3.128525	3.49306	8.75629e-4	6.07633e-5	0.0106963	0.00121305
chr12	74541176	74541274	12961071	0	+	0.469388	(0.455,0.49]	chr12	1010219	29	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	2.30416	3.12833	3.9525	0.00182199	2.64659e-6	0.0176039	9.98197e-5
chr10	27539068	27539166	10988553	0	+	0.306122	(0.29,0.33]	chr10	835725	11	UTR3	UTR3:EXON_MRNA:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000682668.1:ENST00000682173.1:ENST00000684134.1:ENST00000682777.1:ENST00000684191.1:ENST00000682347.1:ENST00000683030.1:ENST00000683915.1:ENST00000684457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.92065	3.128045	3.33544	0.0117842	0.0016889	0.0686664	0.0165476
chr8	33498629	33498726	9272170	0	+	0.329897	(0.29,0.33]	chr8	709761	1	UTR3	UTR3:EXON_MRNA	MAK16	ENSG00000198042.11	ENST00000360128.11:ENST00000518389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.92065	3.128045	3.33544	0.0117842	0.0016889	0.0686664	0.0165476
chr6	27831427	27831527	7649617	0	-	0.62	(0.59,1]	chr6	582812	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C12	ENSG00000273542.2	ENST00000611927.2	protein_coding	protein_coding	protein_coding	protein_coding	21	352	2	1.76879	3.12783	4.48687	0.00316291	3.12513e-9	0.0266696	3.08194e-7
chr11	7987452	7987540	11789412	0	+	0.727273	(0.59,1]	chr11	902500	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	115	2	2.19221	3.127735	4.06326	0.00615677	4.19122e-6	0.0439741	1.3377e-4
chr18	73249892	73249992	17176207	0	-	0.48	(0.455,0.49]	chr18	1409672	488	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1:ENST00000583405.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	18	2	2.23479	3.1275950000000003	4.0204	0.0209335	0.00736097	0.101282	0.0490627
chr2	32220212	32220292	1711928	0	+	0.4625	(0.455,0.49]	chr2	167925	1	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.23479	3.1275950000000003	4.0204	0.0209335	0.00736097	0.101282	0.0490627
chr6	44419522	44419597	7163071	0	+	0.466667	(0.455,0.49]	chr6	553997	2	CDS	CDS:EXON_MRNA	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.23479	3.1275950000000003	4.0204	0.0209335	0.00736097	0.101282	0.0490627
chr2	15603191	15603275	1650710	0	+	0.511905	(0.49,0.53]	chr2	162905	1	CDS	CDS:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	60	2	2.93282	3.12751	3.3222	3.30011e-4	2.96558e-5	0.00504024	6.71364e-4
chr1	44780522	44780618	971748	0	-	0.416667	(0.39,0.42]	chr1	102494	3	EXON_PSEUDO	EXON_PSEUDO	RPS15AP11	ENSG00000234093.3	ENST00000594193.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	25	2	2.49701	3.12727	3.75753	0.0339607	2.04026e-4	0.141431	0.00320361
chr2	197497294	197497372	3106880	0	-	0.371795	(0.36,0.39]	chr2	274669	3	CDS	CDS:UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	2.76778	3.1272349999999998	3.48669	0.00365703	6.40815e-5	0.0307238	0.00125657
chr17	41691029	41691125	16226846	0	+	0.5	(0.49,0.53]	chr17	1312506	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	113	2	2.87785	3.127225	3.3766	2.9634e-5	6.41866e-7	7.34601e-4	2.74475e-5
chr6	7249162	7249259	7031367	0	+	0.43299	(0.42,0.455]	chr6	538755	3	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000611109.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.54043	3.12704	3.71365	0.00705852	2.63375e-4	0.047732	0.00427022
chr8	144456935	144457034	10149224	0	-	0.474747	(0.455,0.49]	chr8	763855	36	EXON_MRNA	EXON_MRNA:INTRON	CYHR1	ENSG00000187954.13	ENST00000438911.6:ENST00000530374.6:ENST00000528663.1:ENST00000526887.5:ENST00000533173.1:ENST00000528558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.69344	3.126905	3.56037	0.0176068	5.72551e-4	0.0925619	0.0078026
chr1	2308144	2308242	7387	0	+	0.469388	(0.455,0.49]	chr1	1667	15	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.45014	3.1268700000000003	3.8036	0.00397453	1.59194e-4	0.0322851	0.00263091
chr11	118505954	118506053	12158975	0	+	0.444444	(0.42,0.455]	chr11	937104	37	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000534085.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	3.06293	3.126855	3.19078	0.00492128	0.00310864	0.0366648	0.0274272
chr16	21958534	21958599	15586765	0	+	0.415385	(0.39,0.42]	chr16	1235420	1	CDS	CDS:EXON_MRNA:INTRON	UQCRC2	ENSG00000140740.11	ENST00000630839.2:ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5:ENST00000618892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	3.05461	3.126845	3.19908	8.55091e-4	1.82682e-5	0.0105173	4.52458e-4
chr9	33917335	33917434	10237978	0	+	0.50505	(0.49,0.53]	chr9	769835	2	UTR3	UTR3:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.8671	3.126785	3.38647	0.0100489	1.15525e-4	0.0623334	0.00204405
chr1	27405713	27405812	908760	0	-	0.525253	(0.49,0.53]	chr1	95011	16	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	1.58979	3.12675	4.66371	0.0211872	5.91374e-7	0.101914	2.55031e-5
chr19	11345332	11345415	17462779	0	-	0.53012	(0.53,0.59]	chr19	1461662	1	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	RAB3D:TMEM205	ENSG00000105514.8:ENSG00000105518.14	ENST00000589655.1:ENST00000447337.5:ENST00000593256.6:ENST00000586218.5:ENST00000586956.5:ENST00000354882.10:ENST00000586590.5:ENST00000585722.1:ENST00000587948.5:ENST00000589555.5:ENST00000588560.5:ENST00000588321.1:ENST00000586701.1:ENST00000592952.5:ENST00000590482.5:ENST00000591677.5:ENST00000590788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.7898	3.126645	3.46349	0.0128364	9.2216e-4	0.0719798	0.0104432
chr3	174377719	174377814	3902633	0	+	0.547368	(0.53,0.59]	chr3	329459	6	EXON_PSEUDO	EXON_PSEUDO	RP11-393N4.2	ENSG00000213169.3	ENST00000435269.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	29	2	2.7898	3.126645	3.46349	0.0128364	9.2216e-4	0.0719798	0.0104432
chr4	78911743	78911838	4912701	0	+	0.578947	(0.53,0.59]	chr4	404412	13	CDS	CDS:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.7898	3.126645	3.46349	0.0128364	9.2216e-4	0.0719798	0.0104432
chr19	34400130	34400224	17300568	0	+	0.638298	(0.59,1]	chr19	1429897	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000586392.1:ENST00000592740.5:ENST00000586077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	297	2	2.52836	3.12663	3.7249	1.85814e-4	1.39545e-7	0.00322865	7.44987e-6
chr6	20424124	20424224	7074899	0	+	0.31	(0.29,0.33]	chr6	541429	199	INTRON	INTRON	E2F3	ENSG00000112242.15	ENST00000346618.8:ENST00000613242.4:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.17855	3.1266249999999998	4.0747	0.0183673	0.00577533	0.0928041	0.0417823
chr12	24878529	24878589	13256349	0	-	0.416667	(0.39,0.42]	chr12	1038886	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	5	45	2	2.5823	3.1265650000000003	3.67083	0.00246531	1.93844e-5	0.0230262	4.72961e-4
chr7	30632347	30632437	8203894	0	+	0.533333	(0.53,0.59]	chr7	625861	2	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	2.37402	3.12643	3.87884	0.00230837	1.11478e-4	0.0211205	0.00213212
chr3	47586738	47586836	4161748	0	-	0.5	(0.49,0.53]	chr3	348302	16	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	11	104	2	2.98555	3.126405	3.26726	3.00784e-5	1.57296e-6	7.44291e-4	5.85426e-5
chr19	38878830	38878922	17561372	0	-	0.554348	(0.53,0.59]	chr19	1475176	4	UTR3	UTR3:EXON_MRNA	SIRT2	ENSG00000068903.20	ENST00000358931.9:ENST00000392081.6:ENST00000462654.5:ENST00000479290.5:ENST00000249396.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.27113	3.12614	3.98115	0.0178853	6.28226e-5	0.0918323	0.00124286
chr6	36919639	36919701	7135705	0	+	0.548387	(0.53,0.59]	chr6	549798	2	CDS	CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.27113	3.12614	3.98115	0.0178853	6.28226e-5	0.0918323	0.00124286
chr1	10417442	10417509	39888	0	+	0.522388	(0.49,0.53]	chr1	4824	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	2.72712	3.12613	3.52514	9.78408e-4	4.98361e-5	0.0109424	0.0011306
chr2	74877165	74877243	1893279	0	+	0.525641	(0.49,0.53]	chr2	179590	1	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.01464	3.126115	4.23759	0.0205094	0.00436474	0.0991175	0.0335517
chr13	31145630	31145699	13951380	0	-	0.492754	(0.49,0.53]	chr13	1095011	2	CDS	CDS:UTR3:EXON_MRNA	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.56183	3.1261	3.69037	0.0261296	0.0226513	0.118976	0.10505
chr3	11556167	11556266	4037558	0	-	0.525253	(0.49,0.53]	chr3	338890	2	UTR3	UTR3:EXON_MRNA	VGLL4	ENSG00000144560.15	ENST00000430365.7:ENST00000273038.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.56183	3.1261	3.69037	0.0261296	0.0226513	0.118976	0.10505
chr5	36163644	36163700	5933398	0	+	0.517857	(0.49,0.53]	chr5	465192	1	CDS	CDS:EXON_MRNA:INTRON	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000679258.1:ENST00000679015.1:ENST00000677911.1:ENST00000677984.1:ENST00000679283.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000508514.5:ENST00000509692.5:ENST00000678149.1:ENST00000678948.1:ENST00000513263.2:ENST00000677861.1:ENST00000504386.1:ENST00000677905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.56183	3.1261	3.69037	0.0261296	0.0226513	0.118976	0.10505
chr7	116961513	116961612	8478305	0	+	0.50505	(0.49,0.53]	chr7	647576	18	INTRON	INTRON	ST7:ST7-OT4:CTB-114A6.2	ENSG00000004866.22:ENSG00000214188.9:ENSG00000288635.1	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000466018.5:ENST00000421345.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	14	2	2.56183	3.1261	3.69037	0.0261296	0.0226513	0.118976	0.10505
chr8	92144261	92144348	9946849	0	-	0.517241	(0.49,0.53]	chr8	750559	3	EXON_PSEUDO	EXON_PSEUDO	RP11-777J24.1	ENSG00000233778.3	ENST00000465478.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.56183	3.1261	3.69037	0.0261296	0.0226513	0.118976	0.10505
chrX	47247930	47248029	18687268	0	+	0.525253	(0.49,0.53]	chrX	1593445	1	UTR3	UTR3:EXON_MRNA	USP11	ENSG00000102226.10	ENST00000218348.7:ENST00000377107.7:ENST00000469080.5:ENST00000467378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.56183	3.1261	3.69037	0.0261296	0.0226513	0.118976	0.10505
chr1	203863662	203863701	670689	0	+	0.487179	(0.455,0.49]	chr1	67664	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5:ENST00000469451.1:ENST00000367208.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.85172	3.125905	3.40009	0.010864	0.00120619	0.0643837	0.0129255
chr4	169713078	169713150	5218119	0	+	0.486111	(0.455,0.49]	chr4	420929	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.85172	3.125905	3.40009	0.010864	0.00120619	0.0643837	0.0129255
chr14	55766636	55766735	14301041	0	+	0.525253	(0.49,0.53]	chr14	1117939	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-813I20.2:RPL13AP3	ENSG00000258784.1:ENSG00000177350.6	ENST00000554458.1:ENST00000487479.1:ENST00000494676.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	20	2	2.51671	3.125825	3.73494	0.0189345	0.00768763	0.0934721	0.050396
chr8	34874538	34874633	9278897	0	+	0.526316	(0.49,0.53]	chr8	709872	5	EXON_PSEUDO	EXON_PSEUDO	RP11-734J24.1	ENSG00000243181.2	ENST00000477341.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.51671	3.125825	3.73494	0.0189345	0.00768763	0.0934721	0.050396
chr16	58162682	58162780	15965652	0	-	0.55102	(0.53,0.59]	chr16	1280935	33	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	34	2	2.4274	3.1257349999999997	3.82407	0.0179666	0.00178327	0.0918323	0.017318
chr3	195781072	195781171	4661077	0	-	0.575758	(0.53,0.59]	chr3	385270	24	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	3.02054	3.1256950000000003	3.2308500000000002	0.00577011	2.81517e-4	0.0426551	0.00415519
chr8	144096336	144096415	9650297	0	+	0.531646	(0.53,0.59]	chr8	731513	1	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000528618.1:ENST00000525122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	3.02054	3.1256950000000003	3.2308500000000002	0.00577011	2.81517e-4	0.0426551	0.00415519
chr1	219968599	219968667	1510659	0	-	0.294118	(0.29,0.33]	chr1	150952	1	UTR3	UTR3:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.63813	3.12568	3.61323	0.00803229	3.91773e-6	0.0528968	1.26663e-4
chr21	33551819	33551918	18101175	0	+	0.484848	(0.455,0.49]	chr21	1534527	12	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	79	2	2.72608	3.125435	3.52479	1.66807e-4	1.58128e-6	0.00271868	6.46312e-5
chr7	26212607	26212707	8183124	0	+	0.3	(0.29,0.33]	chr7	624437	5	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	34	207	2	2.90237	3.125355	3.34834	4.54585e-7	3.36812e-9	2.27746e-5	3.03089e-7
chr16	100430	100489	15815454	0	-	0.576271	(0.53,0.59]	chr16	1259944	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	1.69162	3.1251100000000003	4.5586	0.0342431	0.00161229	0.141233	0.0169168
chr15	44717698	44717790	14899981	0	+	0.326087	(0.29,0.33]	chr15	1171710	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000648006.3:ENST00000349264.10:ENST00000559907.5:ENST00000559220.1:ENST00000561139.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	164	2	3.04902	3.125045	3.20107	1.37348e-6	2.07496e-8	5.74454e-5	1.45188e-6
chr18	211184	211284	16716204	0	+	0.45	(0.42,0.455]	chr18	1379160	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	2.90284	3.1249000000000002	3.34696	4.27478e-4	2.50958e-5	0.00618684	5.82876e-4
chr6	79953827	79953919	7808130	0	-	0.48913	(0.455,0.49]	chr6	598268	10	EXON_PSEUDO	EXON_PSEUDO	GAPDHP63	ENSG00000218582.2	ENST00000405405.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	41	2	2.35716	3.124755	3.89235	0.00260884	9.60445e-5	0.0230635	0.00190731
chr9	92210606	92210706	10736715	0	-	0.37	(0.36,0.39]	chr9	812217	5	UTR3	UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	106	2	2.88044	3.1247350000000003	3.36903	8.65818e-6	3.15949e-7	2.44412e-4	1.68021e-5
chr3	194479807	194479907	4655276	0	-	0.37	(0.36,0.39]	chr3	384521	117	INTRON	INTRON	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.06292	3.12467	3.18642	0.00499846	0.00359152	0.0370021	0.0302391
chr12	14478316	14478394	12745293	0	+	0.448718	(0.42,0.455]	chr12	990795	1	CDS	CDS:EXON_MRNA	ATF7IP	ENSG00000171681.13	ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000540793.5:ENST00000535738.1	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.99701	3.1245149999999997	4.25202	0.0235036	1.07036e-5	0.111072	2.92107e-4
chr17	40404151	40404212	16538910	0	-	0.42623	(0.42,0.455]	chr17	1354627	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.99701	3.1245149999999997	4.25202	0.0235036	1.07036e-5	0.111072	2.92107e-4
chr8	97719118	97719189	9506329	0	+	0.422535	(0.42,0.455]	chr8	722714	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	1.99701	3.1245149999999997	4.25202	0.0235036	1.07036e-5	0.111072	2.92107e-4
chr4	75643837	75643936	5472851	0	-	0.383838	(0.36,0.39]	chr4	438361	21	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	43	2	2.66259	3.12448	3.58637	5.84377e-4	2.53755e-4	0.00793559	0.00381647
chr1	173791547	173791632	549964	0	+	0.517647	(0.49,0.53]	chr1	58403	1	EXON_SMALL	EXON_SMALL	RN7SKP160	ENSG00000200674.1	ENST00000363804.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	7	73	2	2.75215	3.124065	3.49598	8.79689e-4	2.05267e-6	0.0107294	7.32173e-5
chr19	55387929	55388013	17396177	0	+	0.595238	(0.59,1]	chr19	1448680	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	RPL28:MIR6805	ENSG00000108107.15:ENSG00000284029.1	ENST00000344063.7:ENST00000558815.5:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000615055.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	32	589	2	2.75411	3.123915	3.49372	1.45666e-5	4.09555e-8	4.10769e-4	2.59819e-6
chr11	9420410	9420505	11792618	0	+	0.389474	(0.36,0.39]	chr11	902844	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000531235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	3.06114	3.12378	3.18642	0.00359152	1.59276e-4	0.0302391	0.00263091
chr15	34979313	34979410	15207815	0	-	0.278351	[0,0.29]	chr15	1197458	11	UTR3	UTR3:EXON_MRNA	ZNF770	ENSG00000198146.4	ENST00000356321.4	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.3458	3.12378	3.90176	0.0116272	0.00977224	0.0685835	0.0611259
chr1	236981338	236981430	772165	0	+	0.565217	(0.53,0.59]	chr1	77965	1	EXON_PSEUDO	EXON_PSEUDO	RPL35P1	ENSG00000237991.3	ENST00000450819.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	48	2	3.11779	3.12361	3.12943	5.11883e-4	4.81557e-4	0.00677016	0.00664583
chr3	49095931	49096028	4172399	0	-	0.505155	(0.49,0.53]	chr3	350319	1	UTR3	UTR3:EXON_MRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000497635.5:ENST00000487495.5:ENST00000494984.5:ENST00000414533.5:ENST00000634473.1:ENST00000464962.6:ENST00000634336.1:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000466179.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	49	2	1.9676	3.123605	4.27961	0.00876974	9.03426e-6	0.056115	2.53429e-4
chr19	49492197	49492292	17370773	0	+	0.421053	(0.42,0.455]	chr19	1443140	5	UTR3	UTR3:EXON_MRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000677048.1:ENST00000676556.1:ENST00000678187.1:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	137	2	3.10322	3.1235549999999996	3.14389	5.70691e-6	3.84928e-7	1.89179e-4	1.76303e-5
chr2	43888302	43888401	2622913	0	-	0.414141	(0.39,0.42]	chr2	236084	22	UTR3	UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.48908	3.123305	3.75753	0.0101318	2.04026e-4	0.0626311	0.00320361
chr9	112250928	112251015	10803201	0	-	0.517241	(0.49,0.53]	chr9	818453	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	11	86	2	2.52525	3.123195	3.72114	7.61588e-5	1.38104e-5	0.00145043	3.94563e-4
chr1	149812042	149812132	1286911	0	-	0.633333	(0.59,1]	chr1	127819	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	H2BC18	ENSG00000203814.6	ENST00000545683.1:ENST00000469483.1:ENST00000620458.1:ENST00000369167.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	403	2	2.48761	3.12318	3.75875	8.7196e-5	5.97534e-8	0.00162367	3.96722e-6
chr1	229470729	229470804	1542122	0	-	0.52	(0.49,0.53]	chr1	154425	3	CDS	CDS:EXON_MRNA	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.01617	3.123115	3.23006	0.00253719	8.62231e-4	0.0233955	0.0100487
chr17	28576874	28576948	16485959	0	-	0.648649	(0.59,1]	chr17	1347770	2	UTR5	UTR5:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000584086.5:ENST00000581807.5:ENST00000582381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.25872	3.123115	3.98751	0.0301044	0.0193473	0.129773	0.0969537
chr1	160278870	160278967	1328559	0	-	0.515464	(0.49,0.53]	chr1	135912	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-574F21.3:PEX19	ENSG00000258465.8:ENSG00000162735.19	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000368072.10:ENST00000472750.5:ENST00000467711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr11	47786503	47786554	12389415	0	-	0.509804	(0.49,0.53]	chr11	957411	2	CDS	CDS:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000532773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr12	49002898	49002998	13322954	0	-	0.5	(0.49,0.53]	chr12	1045330	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-386G11.12:PRKAG1	ENSG00000288710.1:ENSG00000181929.13	ENST00000683988.1:ENST00000548065.7:ENST00000548362.5:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551770.5:ENST00000551696.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr17	32525517	32525617	16499985	0	-	0.53	(0.49,0.53]	chr17	1350100	22	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr19	43586554	43586653	17579567	0	-	0.494949	(0.49,0.53]	chr19	1478877	23	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	L34079.2:IRGQ	ENSG00000268361.1:ENSG00000167378.9	ENST00000594374.1:ENST00000422989.6:ENST00000596409.1:ENST00000601520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr20	50579776	50579851	17816177	0	+	0.506667	(0.49,0.53]	chr20	1507139	2	CDS	CDS:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr20	50891211	50891307	18006294	0	-	0.5	(0.49,0.53]	chr20	1526241	14	UTR3	UTR3:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr3	37025697	37025774	3410873	0	+	0.493506	(0.49,0.53]	chr3	296320	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5:ENST00000673889.1:ENST00000616768.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr7	100958171	100958270	8429672	0	+	0.515152	(0.49,0.53]	chr7	643839	65	CDS	CDS:EXON_MRNA	MUC3A	ENSG00000169894.18	ENST00000379458.9:ENST00000483366.5:ENST00000414964.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr8	41932796	41932895	9808775	0	-	0.525253	(0.49,0.53]	chr8	741774	6	CDS	CDS:EXON_MRNA	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr9	124353012	124353110	10458840	0	+	0.520408	(0.49,0.53]	chr9	787655	22	UTR3	UTR3:EXON_MRNA	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000320246.10:ENST00000373600.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.3044	3.1230849999999997	3.94177	0.0509448	0.0104929	0.181793	0.063428
chr1	219968736	219968805	1510661	0	-	0.405797	(0.39,0.42]	chr1	150952	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000468487.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	2.13033	3.122805	4.11528	0.00865856	7.73976e-7	0.0557159	3.2172e-5
chr14	52646374	52646461	14630096	0	-	0.367816	(0.36,0.39]	chr14	1145971	1	CDS	CDS:UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000553714.1:ENST00000554019.5:ENST00000556039.5:ENST00000555069.1:ENST00000556358.5:ENST00000556769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	2.02118	3.122715	4.22425	0.0251625	3.15032e-7	0.117055	1.49191e-5
chr1	99740866	99740940	1197670	0	-	0.364865	(0.36,0.39]	chr1	116896	2	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.56782	3.1223650000000003	3.67691	0.00659672	2.38454e-5	0.0460001	6.18922e-4
chr7	100099588	100099670	8949699	0	-	0.52439	(0.49,0.53]	chr7	683556	1	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5:ENST00000467516.5:ENST00000465688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	67	2	2.91806	3.12236	3.32666	1.17657e-4	2.88212e-5	0.00206264	7.23034e-4
chr1	17028667	17028736	873097	0	-	0.492754	(0.49,0.53]	chr1	89456	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5:ENST00000475506.1:ENST00000463045.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	22	2	1.81659	3.122245	4.4279	0.0376859	0.00196987	0.147713	0.0193972
chr2	74214078	74214131	1891737	0	+	0.528302	(0.49,0.53]	chr2	179205	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.30264	3.122205	3.94177	0.0165402	0.0104929	0.087611	0.063428
chr22	17688985	17689063	18290754	0	+	0.525641	(0.49,0.53]	chr22	1552119	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.30264	3.122205	3.94177	0.0165402	0.0104929	0.087611	0.063428
chr7	29650542	29650642	8747379	0	-	0.5	(0.49,0.53]	chr7	667381	513	INTRON	INTRON	ZNRF2P2	ENSG00000225264.3	ENST00000442865.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	19	2	2.30264	3.122205	3.94177	0.0165402	0.0104929	0.087611	0.063428
chr4	10097800	10097891	5311837	0	-	0.505495	(0.49,0.53]	chr4	427703	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.56467	3.1221949999999996	4.67972	0.051923	6.94757e-4	0.18423900000000001	0.00876781
chr1	52020753	52020842	1018059	0	-	0.516854	(0.49,0.53]	chr1	105390	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	27	2	2.56183	3.1221449999999997	3.68246	0.0261296	3.06313e-4	0.118976	0.00442973
chr17	78174185	78174280	16693268	0	-	0.505263	(0.49,0.53]	chr17	1375298	2	UTR3	UTR3:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.56183	3.1221449999999997	3.68246	0.0261296	3.06313e-4	0.118976	0.00442973
chr2	219215021	219215082	3191215	0	-	0.508197	(0.49,0.53]	chr2	280825	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000496984.5:ENST00000492953.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.56183	3.1221449999999997	3.68246	0.0261296	3.06313e-4	0.118976	0.00442973
chr3	38010130	38010202	4121259	0	-	0.527778	(0.49,0.53]	chr3	344574	1	CDS	CDS:EXON_MRNA	PLCD1	ENSG00000187091.14	ENST00000334661.5:ENST00000461445.5:ENST00000463876.5:ENST00000484829.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.56183	3.1221449999999997	3.68246	0.0261296	3.06313e-4	0.118976	0.00442973
chr9	122858928	122859015	10841530	0	-	0.494253	(0.49,0.53]	chr9	821401	4	CDS	CDS:UTR3:EXON_MRNA	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000423239.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.56183	3.1221449999999997	3.68246	0.0261296	3.06313e-4	0.118976	0.00442973
chr14	55063059	55063148	14298028	0	+	0.595506	(0.59,1]	chr14	1117542	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1:ENST00000553976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	60	2	2.85123	3.122075	3.39292	0.0022846	0.00192565	0.0209856	0.0191769
chr17	76563602	76563699	16359185	0	+	0.402062	(0.39,0.42]	chr17	1328581	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	4	40	2	2.62131	3.12201	3.62271	0.00609677	2.66379e-5	0.0439136	6.1526e-4
chr17	14705258	14705350	16454128	0	-	0.467391	(0.455,0.49]	chr17	1343038	3	EXON_PSEUDO	EXON_PSEUDO	RPS18P12	ENSG00000230897.1	ENST00000412454.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	63	2	2.27492	3.121955	3.96899	0.0193827	2.27279e-7	0.0943643	1.1289e-5
chr2	231457062	231457124	3226736	0	-	0.403226	(0.39,0.42]	chr2	283851	2	CDS	CDS:UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000466274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	3.0565	3.1219400000000004	3.18738	1.93131e-4	7.15306e-5	0.0033147	0.00137393
chr19	40741369	40741459	17567325	0	-	0.511111	(0.49,0.53]	chr19	1476583	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000596940.5:ENST00000598485.6:ENST00000594163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.30189	3.12183	3.94177	0.0104929	0.00685554	0.063428	0.0471063
chr3	98590686	98590742	4319654	0	-	0.464286	(0.455,0.49]	chr3	360281	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000513674.1:ENST00000515041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.50904	3.12158	3.73412	0.0310515	1.26741e-5	0.131262	3.34022e-4
chr1	11963583	11963636	45380	0	+	0.622642	(0.59,1]	chr1	5767	2	CDS	CDS:EXON_MRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.39747	3.1215200000000003	3.84557	0.0430221	0.0410704	0.163285	0.161091
chr18	12325282	12325375	16762274	0	+	0.602151	(0.59,1]	chr18	1382538	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TUBB6	ENSG00000176014.13	ENST00000590103.5:ENST00000591909.5:ENST00000317702.10:ENST00000417736.2:ENST00000586810.5:ENST00000590967.5:ENST00000591208.1:ENST00000591463.1:ENST00000586691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.39747	3.1215200000000003	3.84557	0.0430221	0.0410704	0.163285	0.161091
chr2	74418342	74418442	2742652	0	-	0.65	(0.59,1]	chr2	244336	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_PSEUDO:INTRON	RP11-523H20.5:C2orf81:HMGA1P8	ENSG00000159239.13:ENSG00000284308.2:ENSG00000233155.1	ENST00000517883.2:ENST00000612891.4:ENST00000684111.1:ENST00000640331.1:ENST00000638555.1:ENST00000414130.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	1	22	2	2.39747	3.1215200000000003	3.84557	0.0430221	0.0410704	0.163285	0.161091
chr8	142727611	142727693	9645789	0	+	0.792683	(0.59,1]	chr8	730676	3	CDS	CDS:EXON_MRNA	THEM6	ENSG00000130193.8	ENST00000336138.4	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.39747	3.1215200000000003	3.84557	0.0430221	0.0410704	0.163285	0.161091
chr15	90907308	90907401	15103611	0	+	0.537634	(0.53,0.59]	chr15	1188708	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000558640.5:ENST00000561046.1:ENST00000557865.5:ENST00000560616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	2.62081	3.1214250000000003	3.62204	4.3021e-4	3.14057e-4	0.00620274	0.00452711
chr1	202946438	202946524	1453239	0	-	0.523256	(0.49,0.53]	chr1	146075	1	CDS	CDS:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.11783	3.121365	4.1249	0.0142725	2.4461e-5	0.0780078	5.72214e-4
chr1	110019050	110019119	401890	0	+	0.507246	(0.49,0.53]	chr1	39319	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1:ENST00000469401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.56183	3.1213550000000003	3.68088	0.0261296	1.82756e-5	0.118976	4.52458e-4
chr1	1752312	1752411	829354	0	-	0.616162	(0.59,1]	chr1	82839	12	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	2.4608	3.12134	3.78188	0.00407427	3.33896e-4	0.0324137	0.00472923
chr12	56282419	56282513	13349952	0	-	0.521277	(0.49,0.53]	chr12	1051026	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000552331.1:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000547449.1:ENST00000547912.1:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	1.57891	3.1213100000000003	4.66371	0.0281303	5.91374e-7	0.126918	2.55031e-5
chr1	156338244	156338305	1314336	0	-	0.57377	(0.53,0.59]	chr1	133486	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000478640.6:ENST00000368256.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	38	2	3.11275	3.12109	3.12943	0.00407571	4.81557e-4	0.032143	0.00677016
chr12	56158345	56158401	12898519	0	+	0.589286	(0.53,0.59]	chr12	1004353	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MYL6B:MYL6	ENSG00000196465.10:ENSG00000092841.19	ENST00000548571.1:ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000552297.5:ENST00000549017.5:ENST00000549566.5:ENST00000547703.5:ENST00000550697.6:ENST00000547649.5:ENST00000536128.5:ENST00000548725.5:ENST00000547408.5:ENST00000551589.5:ENST00000550639.1:ENST00000546630.1:ENST00000548400.5:ENST00000549392.5:ENST00000548293.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	38	2	2.37399	3.12104	3.86809	0.0126178	1.18973e-4	0.0717599	0.00207755
chr2	215326821	215326899	2377047	0	+	0.397436	(0.39,0.42]	chr2	213526	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.34349	3.120985	3.89848	0.0169272	9.30194e-5	0.0890655	0.00169783
chr1	108635249	108635348	394936	0	+	0.535354	(0.53,0.59]	chr1	38052	2	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	3.11779	3.120595	3.1234	0.00390623	5.11883e-4	0.0322851	0.00664583
chr7	98291318	98291394	8418678	0	+	0.565789	(0.53,0.59]	chr7	641015	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BRI3	ENSG00000164713.10	ENST00000456357.6:ENST00000539286.5:ENST00000297290.4:ENST00000473967.1:ENST00000491463.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	37	2	2.23705	3.12049	4.00393	0.0108084	0.00245055	0.064368	0.0221427
chr19	57864917	57865017	17410281	0	+	0.29	[0,0.29]	chr19	1450687	49	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	1.94841	3.120435	4.29246	0.0427374	0.00254021	0.168094	0.0227257
chr1	148751345	148751442	458212	0	+	0.278351	[0,0.29]	chr1	45663	20	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	3.0735	3.1203849999999997	3.16727	0.00785095	4.54416e-4	0.0520241	0.00608573
chr1	67207615	67207665	263604	0	+	0.48	(0.455,0.49]	chr1	29471	1	UTR5	UTR5:EXON_MRNA:INTRON	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	65	2	3.09445	3.12035	3.14625	6.1765e-4	9.46864e-6	0.00822794	2.63474e-4
chr6	106970897	106970994	7876581	0	-	0.43299	(0.42,0.455]	chr6	603137	12	UTR3	UTR3:EXON_MRNA	CD24	ENSG00000272398.6	ENST00000619133.4:ENST00000606017.2	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.69266	3.1202900000000002	4.54792	0.0354788	9.66045e-4	0.143019	0.0115185
chr3	130998293	130998389	3738599	0	+	0.416667	(0.39,0.42]	chr3	320236	1	CDS	CDS:UTR3:EXON_MRNA	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000505330.5:ENST00000507488.6:ENST00000508532.5:ENST00000533801.6:ENST00000510168.6:ENST00000513801.5:ENST00000504948.5:ENST00000328560.12:ENST00000428331.6:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5:ENST00000514654.5:ENST00000507194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.30055	3.1202550000000002	3.93996	0.00841622	0.0070645	0.054565	0.0477419
chr12	57532014	57532082	13356856	0	-	0.485294	(0.455,0.49]	chr12	1052769	1	CDS	CDS:UTR3:EXON_MRNA	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5:ENST00000549394.5:ENST00000546758.5:ENST00000550750.2:ENST00000551611.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.50904	3.1202300000000003	3.73142	0.0310515	2.35261e-4	0.131262	0.00356397
chr11	119017361	119017412	12626300	0	-	0.588235	(0.53,0.59]	chr11	979691	1	CDS	CDS:UTR3:EXON_MRNA	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1:ENST00000524864.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	197	2	3.08943	3.120095	3.15076	1.16806e-6	4.54822e-7	5.0108e-5	2.04352e-5
chr15	77615110	77615207	15391772	0	-	0.556701	(0.53,0.59]	chr15	1216760	11	CDS	CDS:EXON_MRNA	LINGO1	ENSG00000169783.13	ENST00000355300.7:ENST00000561030.5:ENST00000557798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.56002	3.119975	3.67993	0.00634904	3.22778e-4	0.0446708	0.0046122
chr8	27810012	27810109	9771138	0	-	0.319588	(0.29,0.33]	chr8	738649	5	UTR3	UTR3:EXON_MRNA	PBK	ENSG00000168078.10	ENST00000301905.9	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	3.10761	3.119865	3.13212	0.00551048	6.03128e-4	0.0414592	0.00754033
chr15	90087187	90087263	15437600	0	-	0.486842	(0.455,0.49]	chr15	1221163	2	CDS	CDS:UTR3:EXON_MRNA	IDH2	ENSG00000182054.10	ENST00000330062.8:ENST00000560061.1:ENST00000559482.5:ENST00000540499.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.30139	3.1196650000000004	3.93794	0.0530131	7.43966e-5	0.195536	0.00142165
chr3	194639911	194640010	3984429	0	+	0.484848	(0.455,0.49]	chr3	335381	64	INTRON	INTRON	AC046143.3	ENSG00000229334.1	ENST00000447139.1	lncRNA	lncRNA	lncRNA	lncRNA	2	28	2	2.30139	3.1196650000000004	3.93794	0.0530131	7.43966e-5	0.195536	0.00142165
chr7	133035470	133035562	9078011	0	-	0.51087	(0.49,0.53]	chr7	693067	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	CHCHD3:RP11-371A22.1	ENSG00000106554.13:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000634247.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	14	144	2	2.21243	3.11958	4.02673	8.04649e-4	1.72892e-9	0.0100063	1.70344e-7
chr1	21852994	21853070	890958	0	-	0.684211	(0.59,1]	chr1	92388	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	92	2	2.37755	3.1194699999999997	3.86139	0.0015785	2.54973e-4	0.0157756	0.00417441
chr4	78908415	78908515	4912667	0	+	0.37	(0.36,0.39]	chr4	404409	94	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.84089	3.11946	3.39803	0.0128123	0.00122711	0.0719798	0.0130695
chr7	151360440	151360535	8618509	0	+	0.378947	(0.36,0.39]	chr7	658617	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NUB1	ENSG00000013374.17	ENST00000413040.7:ENST00000468404.5:ENST00000568733.6:ENST00000470229.6:ENST00000470316.5:ENST00000480907.5:ENST00000497987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.84089	3.11946	3.39803	0.0128123	0.00122711	0.0719798	0.0130695
chr1	36304524	36304616	141730	0	+	0.358696	(0.33,0.36]	chr1	17609	1	UTR3	UTR3:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.50997	3.119435	3.7289	9.74806e-4	1.33223e-5	0.0116117	3.48915e-4
chr19	2429831	2429929	17423107	0	-	0.622449	(0.59,1]	chr19	1453517	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LMNB2	ENSG00000176619.13	ENST00000532465.1:ENST00000325327.4:ENST00000475819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	3.06258	3.11937	3.17616	0.00616167	0.00434232	0.0438642	0.0339139
chr9	34088250	34088349	10634763	0	-	0.353535	(0.33,0.36]	chr9	803967	20	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.7655	3.11925	3.473	0.0175892	8.77304e-4	0.0918323	0.0101202
chr17	1681619	1681690	16401628	0	-	0.521127	(0.49,0.53]	chr17	1334971	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	2.51367	3.119135	3.7246	0.00120983	1.36405e-5	0.0135286	3.54667e-4
chr6	53295641	53295699	7740451	0	-	0.431034	(0.42,0.455]	chr6	594403	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	2.84743	3.1191	3.39077	2.0116e-4	1.44882e-6	0.0034174	5.46392e-5
chrX	47206345	47206444	18686827	0	+	0.555556	(0.53,0.59]	chrX	1593235	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	80	2	2.90632	3.119015	3.33171	3.72925e-4	7.58734e-6	0.00559101	2.19184e-4
chr12	49764448	49764545	12869287	0	+	0.525773	(0.49,0.53]	chr12	999645	17	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	10	93	2	3.11834	3.119005	3.11967	1.16146e-5	1.16069e-5	3.42814e-4	3.1065e-4
chr3	197951158	197951215	3992954	0	+	0.561404	(0.53,0.59]	chr3	336602	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	31	339	2	2.84414	3.118925	3.39371	3.78894e-6	3.09335e-9	1.34433e-4	2.80899e-7
chr1	1786856	1786954	829679	0	-	0.408163	(0.39,0.42]	chr1	82929	17	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	13	101	2	2.93846	3.11885	3.29924	1.02206e-5	3.34894e-6	3.07123e-4	1.10653e-4
chr2	61495454	61495533	2690532	0	-	0.329114	(0.29,0.33]	chr2	240375	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000460037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	53	2	1.88142	3.1187850000000004	4.35615	0.0142455	1.00858e-7	0.0779233	5.6272e-6
chr8	116847009	116847107	10035159	0	-	0.367347	(0.36,0.39]	chr8	755410	12	UTR3	UTR3:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7:ENST00000523986.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	2.63702	3.118735	3.60045	0.00212882	4.13757e-6	0.0206577	1.32555e-4
chr12	56282859	56282925	13349957	0	-	0.515152	(0.49,0.53]	chr12	1051028	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000547449.1:ENST00000547912.1:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	44	2	2.99849	3.11852	3.23855	0.00630123	5.12488e-5	0.0445415	0.00104999
chr1	33010230	33010329	924423	0	-	0.464646	(0.455,0.49]	chr1	97512	24	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	87	2	3.0483	3.11841	3.18852	7.41674e-5	4.24395e-6	0.00156055	1.35169e-4
chr21	37078130	37078229	18114275	0	+	0.434343	(0.42,0.455]	chr21	1535845	43	INTRON	INTRON	TTC3	ENSG00000182670.13	ENST00000492275.5:ENST00000418766.5:ENST00000485402.5:ENST00000438055.5:ENST00000450533.5:ENST00000355666.5:ENST00000481605.5:ENST00000463216.5:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	2.92513	3.1183699999999996	3.31161	0.00186138	3.39829e-4	0.018635	0.00479167
chr5	176346157	176346253	6988275	0	-	0.385417	(0.36,0.39]	chr5	534216	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.20444	3.1183199999999998	4.0322	0.0237257	0.00588589	0.109365	0.0427941
chr8	65613338	65613433	9863460	0	-	0.389474	(0.36,0.39]	chr8	745707	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARMC1	ENSG00000104442.10	ENST00000276569.8:ENST00000458464.3:ENST00000528721.5:ENST00000518908.5:ENST00000523384.1:ENST00000519352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.20444	3.1183199999999998	4.0322	0.0237257	0.00588589	0.109365	0.0427941
chr14	98972962	98973047	14784435	0	-	0.529412	(0.49,0.53]	chr14	1158427	2	EXON_PSEUDO	EXON_PSEUDO	RPL3P4	ENSG00000232573.1	ENST00000417615.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	109	2	2.47845	3.118285	3.75812	4.03082e-4	6.60628e-8	0.00593075	3.91775e-6
chrX	153696195	153696293	18915653	0	+	0.622449	(0.59,1]	chrX	1611204	11	UTR3	UTR3:EXON_MRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.20362	3.118125	4.03263	0.00565413	1.11254e-4	0.0412424	0.00213212
chr1	26281057	26281123	108918	0	+	0.530303	(0.53,0.59]	chr1	12975	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SH3BGRL3	ENSG00000142669.15	ENST00000270792.10:ENST00000319041.6	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	3.11275	3.118075	3.1234	0.00407571	0.00390623	0.0322851	0.032143
chr16	90004967	90005065	16080748	0	-	0.581633	(0.53,0.59]	chr16	1292696	2	UTR3	UTR3:EXON_MRNA	DBNDD1	ENSG00000003249.15	ENST00000568838.2:ENST00000002501.11:ENST00000392973.8:ENST00000304733.8:ENST00000568662.2:ENST00000623401.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	2	28	2	3.11275	3.118075	3.1234	0.00407571	0.00390623	0.0322851	0.032143
chr5	146142888	146142967	6891349	0	-	0.392405	(0.39,0.42]	chr5	527515	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	71	2	2.91508	3.117965	3.32085	4.41174e-4	2.47836e-6	0.0062930699999999996	8.62069e-5
chr8	53966648	53966745	9832415	0	-	0.340206	(0.33,0.36]	chr8	743907	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	42	2	2.31697	3.1178049999999997	3.91864	0.00966431	3.41395e-6	0.0606263	1.12474e-4
chr8	97852339	97852435	9507224	0	+	0.34375	(0.33,0.36]	chr8	722769	10	UTR3	UTR3:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.91384	3.117705	3.32157	0.0021527	1.77615e-4	0.0208395	0.00287736
chr17	2681802	2681899	16086741	0	+	0.463918	(0.455,0.49]	chr17	1293760	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000610190.2:ENST00000574213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.12994	3.1176449999999996	4.10535	0.0304832	0.0064531	0.130204	0.0450905
chr12	98595726	98595787	13036913	0	+	0.47541	(0.455,0.49]	chr12	1014999	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000547908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	81	2	2.31916	3.1174749999999998	3.91579	6.32085e-4	3.36217e-7	0.00785338	1.77027e-5
chr3	43715002	43715058	3441024	0	+	0.428571	(0.42,0.455]	chr3	299372	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	2.81175	3.117425	3.4231	0.00227654	0.00112541	0.0209546	0.0128481
chr8	29057384	29057484	9250732	0	+	0.46	(0.455,0.49]	chr8	708717	8	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	17	2	1.96875	3.11734	4.26593	0.0480352	0.00372962	0.180552	0.0302984
chr2	32024183	32024256	2590168	0	-	0.342466	(0.33,0.36]	chr2	233142	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10:ENST00000295066.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.97606	3.11713	3.2582	0.00871774	0.00230915	0.0558165	0.0211205
chr7	140706562	140706646	8569966	0	+	0.357143	(0.33,0.36]	chr7	654021	1	UTR3	UTR3:EXON_MRNA:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000247866.9:ENST00000476181.5:ENST00000460088.5:ENST00000472695.5:ENST00000476470.5:ENST00000471136.5:ENST00000475276.1:ENST00000479181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.97606	3.11713	3.2582	0.00871774	0.00230915	0.0558165	0.0211205
chr8	58580516	58580608	9351258	0	+	0.358696	(0.33,0.36]	chr8	715160	1	CDS	CDS:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000630925.1:ENST00000447267.4	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	3.03552	3.11712	3.19872	0.0012034	6.97647e-5	0.0134762	0.00134581
chr4	77048490	77048576	5479175	0	-	0.546512	(0.53,0.59]	chr4	439256	3	CDS	CDS:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	23	251	2	2.75986	3.117095	3.47433	1.03123e-5	7.89419e-9	3.09366e-4	6.31684e-7
chr15	77484920	77485017	15037369	0	+	0.42268	(0.42,0.455]	chr15	1182624	21	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	3.05889	3.11669	3.17449	0.00524205	7.7054e-5	0.0399155	0.00146588
chr2	32220452	32220532	1711931	0	+	0.4	(0.39,0.42]	chr2	167925	4	CDS	CDS:UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.784	3.116615	3.44923	0.00261393	0.00105208	0.0230705	0.0123035
chr17	17270895	17270947	16464432	0	-	0.442308	(0.42,0.455]	chr17	1344526	1	CDS	CDS:UTR3:EXON_MRNA	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000583160.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000462236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	3.05889	3.1166099999999997	3.17433	0.00524205	3.82052e-4	0.0399155	0.0052929
chrX	53549049	53549140	19077335	0	-	0.516484	(0.49,0.53]	chrX	1622712	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	2.10817	3.116535	4.1249	0.00798134	2.4461e-5	0.0527008	5.72214e-4
chr1	37701753	37701818	142674	0	+	0.430769	(0.42,0.455]	chr1	17820	1	CDS	CDS:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	3.05889	3.1164300000000003	3.17397	0.00524205	0.0031821	0.0399155	0.0267094
chr12	45850527	45850625	12851682	0	+	0.438776	(0.42,0.455]	chr12	998018	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	3.05889	3.1164300000000003	3.17397	0.00524205	0.0031821	0.0399155	0.0267094
chr16	1315653	1315726	15486337	0	+	0.424658	(0.42,0.455]	chr16	1225653	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000473256.6:ENST00000568288.5:ENST00000567383.6:ENST00000403747.6:ENST00000568209.5:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000679082.1:ENST00000567074.6:ENST00000402301.5:ENST00000677314.1:ENST00000566775.2:ENST00000566159.1:ENST00000564143.1:ENST00000679137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	3.05889	3.1164300000000003	3.17397	0.00524205	0.0031821	0.0399155	0.0267094
chr2	101262614	101262691	1957355	0	+	0.441558	(0.42,0.455]	chr2	185947	2	CDS	CDS:EXON_MRNA	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000462489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	3.05889	3.1164300000000003	3.17397	0.00524205	0.0031821	0.0399155	0.0267094
chr3	33866425	33866525	3399902	0	+	0.58	(0.53,0.59]	chr3	295768	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000473593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	110	2	2.42789	3.1163499999999997	3.80481	5.31454e-4	1.96889e-7	0.00740832	1.00279e-5
chr16	85673331	85673430	15798086	0	+	0.222222	[0,0.29]	chr16	1257094	9	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	2.31697	3.11634	3.91571	0.00756459	1.5798e-4	0.0499309	0.00285004
chr4	94666504	94666600	4985292	0	+	0.302083	(0.29,0.33]	chr4	407482	6	UTR3	UTR3:EXON_MRNA	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	2.63162	3.11615	3.60068	0.00179843	8.26972e-6	0.0174371	2.57233e-4
chr16	153891	153959	15480571	0	+	0.676471	(0.59,1]	chr16	1224147	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000652335.1:ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	51	976	2	2.38222	3.1159299999999996	3.84964	4.29608e-5	1.99722e-9	9.09702e-4	2.09316e-7
chr1	26774504	26774593	110949	0	+	0.573034	(0.53,0.59]	chr1	13337	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1:ENST00000636072.1:ENST00000466382.2:ENST00000636794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	57	2	2.75178	3.115845	3.47991	8.47358e-4	6.7738e-5	0.0104407	0.0013157
chr12	6936313	6936409	12715633	0	+	0.5625	(0.53,0.59]	chr12	987304	9	CDS	CDS:EXON_MRNA	ATN1	ENSG00000111676.15	ENST00000356654.8:ENST00000396684.3	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	2.38903	3.1155850000000003	3.84214	0.00113683	6.5494e-6	0.0129678	1.94116e-4
chr15	52065494	52065593	14935504	0	+	0.343434	(0.33,0.36]	chr15	1174235	6	UTR3	UTR3:EXON_MRNA	MAPK6	ENSG00000069956.13	ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.78095	3.115545	3.45014	0.00388614	8.23333e-5	0.0322851	0.00155613
chr16	56430822	56430921	15959660	0	-	0.393939	(0.39,0.42]	chr16	1279971	18	UTR3	UTR3:EXON_MRNA	NUDT21:RP11-413H22.3	ENSG00000167005.14:ENSG00000288725.1	ENST00000300291.10:ENST00000684388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	1.89968	3.11549	4.3313	0.0298458	0.00209984	0.130016	0.0204266
chr22	30975365	30975463	18344840	0	+	0.438776	(0.42,0.455]	chr22	1559168	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000521091.6:ENST00000643077.1:ENST00000602393.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.19674	3.115285	4.03383	0.0254904	4.24324e-5	0.117089	8.98949e-4
chr10	62806451	62806547	11070313	0	+	0.416667	(0.39,0.42]	chr10	842217	7	UTR3	UTR3:EXON_MRNA	ADO	ENSG00000181915.5	ENST00000373783.3	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.49701	3.1149750000000003	3.73294	0.0339607	0.0190864	0.141431	0.0958835
chr12	64752697	64752781	13379135	0	-	0.404762	(0.39,0.42]	chr12	1054266	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GNS	ENSG00000135677.11	ENST00000418919.6:ENST00000258145.8:ENST00000543646.5:ENST00000542058.5:ENST00000545273.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.49701	3.1149750000000003	3.73294	0.0339607	0.0190864	0.141431	0.0958835
chr21	33575835	33575893	18101441	0	+	0.396552	(0.39,0.42]	chr21	1534599	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000457208.5:ENST00000467616.5:ENST00000473102.5:ENST00000484294.5:ENST00000470533.5:ENST00000478183.5:ENST00000465834.5:ENST00000477419.5:ENST00000491794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	2.49701	3.1149750000000003	3.73294	0.0339607	0.0190864	0.141431	0.0958835
chr4	174302038	174302112	5238576	0	+	0.405405	(0.39,0.42]	chr4	421469	1	CDS	CDS:EXON_MRNA	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5:ENST00000426172.3:ENST00000296519.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.49701	3.1149750000000003	3.73294	0.0339607	0.0190864	0.141431	0.0958835
chrX	21878594	21878692	18609077	0	+	0.397959	(0.39,0.42]	chrX	1589324	2	CDS	CDS:EXON_MRNA	MBTPS2	ENSG00000012174.12	ENST00000379484.10	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.49701	3.1149750000000003	3.73294	0.0339607	0.0190864	0.141431	0.0958835
chrX	38805498	38805592	18666842	0	+	0.585106	(0.53,0.59]	chrX	1591779	1	UTR3	UTR3:EXON_MRNA	MID1IP1	ENSG00000165175.16	ENST00000614558.2:ENST00000457894.5:ENST00000378474.3:ENST00000336949.7	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	2.47378	3.1149649999999998	3.75615	2.50298e-4	2.16536e-4	0.00377881	0.00361336
chr6	149378767	149378867	7480751	0	+	0.4	(0.39,0.42]	chr6	571631	1	CDS_START	CDS_START:CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	75	2	3.10755	3.1149449999999996	3.12234	1.28898e-4	5.39401e-6	0.0024153	1.64762e-4
chr9	131198715	131198815	10496374	0	+	0.57	(0.53,0.59]	chr9	793351	16	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	206	2	3.05271	3.114855	3.177	1.03197e-6	3.57309e-7	4.10065e-5	1.86534e-5
chr1	46189067	46189154	981291	0	-	0.413793	(0.39,0.42]	chr1	103402	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POMGNT1	ENSG00000085998.14	ENST00000396420.7:ENST00000371992.1:ENST00000371984.8:ENST00000475642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.37759	3.11483	3.85207	0.0428865	1.28587e-4	0.161091	0.00241206
chr2	74463189	74463258	2742902	0	-	0.536232	(0.53,0.59]	chr2	244418	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1:ENST00000489655.1:ENST00000414701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	66	2	2.7898	3.114675	3.43955	0.0128364	3.45609e-6	0.0719798	1.13431e-4
chr12	119686357	119686452	13576765	0	-	0.536842	(0.53,0.59]	chr12	1068230	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	3.0099	3.114655	3.21941	0.00600486	0.00266171	0.042887	0.0240332
chr6	31506142	31506238	7115382	0	+	0.5625	(0.53,0.59]	chr6	545667	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7:ENST00000494577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	3.02054	3.11464	3.20874	0.00577011	0.00278422	0.0426551	0.0241009
chr11	18400906	18400935	11831488	0	+	0.482759	(0.455,0.49]	chr11	906009	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	111	2	2.5125	3.11426	3.71602	1.27773e-4	9.12379e-8	0.00241206	5.15904e-6
chr5	140535449	140535538	6255191	0	+	0.494382	(0.49,0.53]	chr5	487640	2	CDS	CDS:EXON_MRNA:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000475148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	2.89482	3.11403	3.33324	0.00162947	5.58105e-5	0.0169972	0.00112733
chr1	218333488	218333588	717799	0	+	0.5	(0.49,0.53]	chr1	72346	25	UTR3	UTR3:EXON_MRNA	RRP15	ENSG00000067533.6	ENST00000366932.4	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.99044	3.114015	4.23759	0.0435903	0.00436474	0.170594	0.0335517
chr20	34072174	34072252	17762576	0	+	0.512821	(0.49,0.53]	chr20	1500113	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	1.99044	3.114015	4.23759	0.0435903	0.00436474	0.170594	0.0335517
chr4	2929105	2929202	4687495	0	+	0.494845	(0.49,0.53]	chr4	388871	7	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	1.99044	3.114015	4.23759	0.0435903	0.00436474	0.170594	0.0335517
chr7	130026157	130026234	9062853	0	-	0.493506	(0.49,0.53]	chr7	692063	1	CDS	CDS:UTR3:EXON_MRNA	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000477578.5:ENST00000471022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	1.99044	3.114015	4.23759	0.0435903	0.00436474	0.170594	0.0335517
chr17	1675151	1675245	16401539	0	-	0.510638	(0.49,0.53]	chr17	1334914	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000576958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	2.92917	3.11371	3.29825	0.00019429700000000001	4.42985e-5	0.00332542	9.29789e-4
chr2	159748003	159748103	2163031	0	+	0.39	(0.36,0.39]	chr2	199192	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000473749.1:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	55	2	3.02543	3.113705	3.20198	4.4092e-4	2.29139e-5	0.0062930699999999996	5.4427e-4
chr1	19469705	19469805	879093	0	-	0.49	(0.455,0.49]	chr1	90723	200	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr1	245798441	245798541	1592250	0	-	0.46	(0.455,0.49]	chr1	158495	96	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr10	23136923	23137015	10964757	0	+	0.48913	(0.455,0.49]	chr10	834559	1	EXON_PSEUDO	EXON_PSEUDO	YWHAZP3	ENSG00000229932.3	ENST00000415292.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr11	126271436	126271509	12196749	0	+	0.465753	(0.455,0.49]	chr11	941191	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	FOXRED1	ENSG00000110074.11	ENST00000533839.5:ENST00000534011.5:ENST00000263578.10:ENST00000529802.1:ENST00000525770.5:ENST00000525083.5:ENST00000526525.1:ENST00000527004.5:ENST00000526366.5:ENST00000524751.5:ENST00000532101.5:ENST00000532125.1:ENST00000534315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr14	34753507	34753607	14578597	0	-	0.46	(0.455,0.49]	chr14	1142145	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000555331.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr21	37223710	37223806	18244226	0	-	0.458333	(0.455,0.49]	chr21	1547397	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr3	52256601	52256700	4182621	0	-	0.474747	(0.455,0.49]	chr3	352627	23	UTR3	UTR3:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr8	22606606	22606702	9226864	0	+	0.479167	(0.455,0.49]	chr8	706051	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCAR2	ENSG00000158941.16	ENST00000308511.8:ENST00000523801.5:ENST00000521301.5:ENST00000389279.7:ENST00000521837.5:ENST00000523349.5:ENST00000518989.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr8	37860009	37860108	9794177	0	-	0.474747	(0.455,0.49]	chr8	740400	15	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr8	109540267	109540364	9557041	0	+	0.484536	(0.455,0.49]	chr8	725593	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	EBAG9	ENSG00000147654.15	ENST00000395785.6:ENST00000529502.5:ENST00000529931.1:ENST00000614147.1:ENST00000337573.10:ENST00000527709.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.50904	3.1135099999999998	3.71798	0.0310515	0.0202679	0.131262	0.0984041
chr8	100923954	100924050	9976257	0	-	0.375	(0.36,0.39]	chr8	752734	1	CDS	CDS:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	86	2	2.88902	3.1134199999999996	3.33782	3.59965e-5	4.90585e-6	8.71532e-4	1.526e-4
chr6	34245461	34245557	7124349	0	+	0.572917	(0.53,0.59]	chr6	548262	7	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	78	778	2	3.10503	3.11332	3.12161	1.61082e-8	4.48802e-9	1.27882e-6	3.87956e-7
chr12	109917683	109917779	13083151	0	+	0.3125	(0.29,0.33]	chr12	1020198	12	UTR3	UTR3:EXON_MRNA:INTRON	TCHP	ENSG00000139437.18	ENST00000544838.5:ENST00000405876.9:ENST00000312777.9:ENST00000537880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.48886	3.113235	3.73761	0.0055888	2.33029e-4	0.0419759	0.00355688
chr1	27412571	27412649	908832	0	-	0.525641	(0.49,0.53]	chr1	95026	1	CDS	CDS:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	5	51	2	2.54558	3.11323	3.68088	0.0024326	1.82756e-5	0.0228485	4.52458e-4
chr17	17816456	17816543	16465718	0	-	0.632184	(0.59,1]	chr17	1344707	1	CDS	CDS:UTR3:EXON_MRNA	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000471445.5:ENST00000469356.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.63214	3.113175	3.59421	0.005622	6.47795e-5	0.0421873	0.00126536
chr1	46310234	46310316	178612	0	+	0.512195	(0.49,0.53]	chr1	23171	1	CDS	CDS:UTR3:EXON_MRNA	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	171	2	2.4998	3.113115	3.72643	2.7395e-5	1.08177e-8	6.30607e-4	9.14791e-7
chr6	13637881	13637955	7605227	0	-	0.297297	(0.29,0.33]	chr6	580027	2	CDS	CDS:EXON_MRNA	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	3.02243	3.11305	3.20367	9.33835e-4	6.11481e-4	0.0105624	0.00818575
chr10	72274777	72274877	11111171	0	+	0.68	(0.59,1]	chr10	845356	1	CDS_START	CDS_START:CDS:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.71222	3.113025	3.51383	0.00398753	1.11838e-4	0.031888	0.00213742
chr1	45781567	45781665	175268	0	+	0.479592	(0.455,0.49]	chr1	22797	4	EXON_PSEUDO	EXON_PSEUDO	RP11-630I5.1	ENSG00000236111.5	ENST00000463059.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.30139	3.11301	3.92463	0.0530131	0.0113417	0.195536	0.0665375
chr12	120767493	120767593	13581760	0	-	0.49	(0.455,0.49]	chr12	1069224	2	CDS	CDS:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000392495.7:ENST00000545209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.30139	3.11301	3.92463	0.0530131	0.0113417	0.195536	0.0665375
chr17	75263339	75263395	16354173	0	+	0.482143	(0.455,0.49]	chr17	1327175	1	CDS	CDS:UTR3:EXON_MRNA	MRPS7	ENSG00000125445.11	ENST00000579761.5:ENST00000245539.11:ENST00000579002.5:ENST00000583407.1:ENST00000581993.5:ENST00000584678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.30139	3.11301	3.92463	0.0530131	0.0113417	0.195536	0.0665375
chr17	78992513	78992613	16698181	0	-	0.48	(0.455,0.49]	chr17	1376269	9	UTR3	UTR3:EXON_MRNA	CANT1	ENSG00000171302.17	ENST00000392446.10:ENST00000302345.6:ENST00000620915.4:ENST00000592228.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.30139	3.11301	3.92463	0.0530131	0.0113417	0.195536	0.0665375
chr2	127941610	127941709	2869552	0	-	0.474747	(0.455,0.49]	chr2	256570	5	UTR3	UTR3:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.30139	3.11301	3.92463	0.0530131	0.0113417	0.195536	0.0665375
chr5	54113270	54113340	6578199	0	-	0.485714	(0.455,0.49]	chr5	509111	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.30139	3.11301	3.92463	0.0530131	0.0113417	0.195536	0.0665375
chr6	158765837	158765935	8043892	0	-	0.561224	(0.53,0.59]	chr6	614903	2	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	21	201	2	2.8021	3.11298	3.42386	1.78874e-6	5.06352e-7	7.23227e-5	2.2373e-5
chr8	89935385	89935483	9933212	0	-	0.265306	[0,0.29]	chr8	749986	22	UTR3	UTR3:EXON_MRNA	NBN	ENSG00000104320.14	ENST00000265433.8:ENST00000396252.6:ENST00000409330.5:ENST00000613033.1:ENST00000474821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	17	2	2.5672	3.11255	3.6579	0.0197988	0.00216014	0.0983378	0.0208941
chr1	171587002	171587075	537576	0	+	0.438356	(0.42,0.455]	chr1	57728	1	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1:ENST00000498596.5	protein_coding	protein_coding	protein_coding	protein_coding	9	68	2	2.43772	3.112425	3.78713	3.09258e-4	9.02026e-6	0.00446491	2.78052e-4
chr4	151101068	151101162	5165561	0	+	0.425532	(0.42,0.455]	chr4	417311	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	201	2	2.95797	3.112375	3.26678	1.14022e-6	3.85326e-8	4.91686e-5	2.46757e-6
chr5	119542084	119542174	6178730	0	+	0.266667	[0,0.29]	chr5	482064	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5:ENST00000509606.1:ENST00000503310.1:ENST00000643897.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.3458	3.112075	3.87835	0.0116272	1.0775e-4	0.0685835	0.00192514
chr17	81855505	81855559	16709627	0	-	0.722222	(0.59,1]	chr17	1377714	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	179	2	2.61897	3.11207	3.60517	9.74438e-4	1.2971e-6	0.0116117	4.9899e-5
chr11	17229054	17229151	11826491	0	+	0.536082	(0.53,0.59]	chr11	905275	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	NUCB2:RP11-452G18.2	ENSG00000070081.17:ENSG00000197149.5	ENST00000528644.5:ENST00000494359.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	41	2	2.0404	3.112065	4.18373	0.0362529	1.85867e-5	0.148525	4.56627e-4
chr10	124400839	124400911	11729284	0	-	0.347222	(0.33,0.36]	chr10	895048	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	60	2	2.97592	3.112025	3.24813	4.1482e-4	4.40268e-6	0.00607555	1.39714e-4
chr10	12173717	12173813	11370460	0	-	0.510417	(0.49,0.53]	chr10	867164	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000476462.5:ENST00000378940.7:ENST00000378927.7:ENST00000498825.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.69746	3.1119149999999998	3.52637	0.00380414	6.68602e-4	0.0317723	0.00820018
chr1	40072184	40072277	151982	0	+	0.397849	(0.39,0.42]	chr1	19043	8	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	11	70	2	1.96902	3.11174	4.25446	0.00230028	2.50054e-7	0.0210875	1.37736e-5
chr7	127694887	127694948	8515364	0	+	0.47541	(0.455,0.49]	chr7	649666	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000461056.5:ENST00000468621.5:ENST00000483503.5:ENST00000492772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	83	2	1.79605	3.111645	4.42724	0.0427708	3.83905e-9	0.168094	3.39055e-7
chr19	41353141	41353239	17568717	0	-	0.642857	(0.59,1]	chr19	1476913	2	UTR5	UTR5:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6	protein_coding	protein_coding	protein_coding	protein_coding	6	124	2	2.4608	3.11164	3.76248	0.00407427	4.26994e-6	0.0324137	1.35885e-4
chr1	222734600	222734699	724628	0	+	0.292929	(0.29,0.33]	chr1	73180	20	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.67277	3.11163	3.55049	0.0255386	6.15323e-4	0.117089	0.00765848
chr14	90404717	90404815	14455579	0	+	0.306122	(0.29,0.33]	chr14	1128586	1	UTR3	UTR3:EXON_MRNA	CALM1	ENSG00000198668.13	ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000553422.1:ENST00000554296.1:ENST00000556721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.67277	3.11163	3.55049	0.0255386	6.15323e-4	0.117089	0.00765848
chr1	8863288	8863343	852387	0	-	0.636364	(0.59,1]	chr1	85910	2	CDS	CDS:UTR3:EXON_MRNA	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2:ENST00000645609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	506	2	3.0757	3.111625	3.14755	1.83905e-6	9.28141e-7	7.39562e-5	3.75826e-5
chr17	36574557	36574653	16522428	0	-	0.53125	(0.53,0.59]	chr17	1351982	2	EXON_PSEUDO	EXON_PSEUDO	CTB-75G16.1	ENSG00000274756.1	ENST00000612648.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	2.35511	3.1116	3.86809	0.0445399	1.18973e-4	0.172163	0.00207755
chr20	50081413	50081509	18004121	0	-	0.541667	(0.53,0.59]	chr20	1525944	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.35511	3.1116	3.86809	0.0445399	1.18973e-4	0.172163	0.00207755
chr22	28795085	28795174	18464267	0	-	0.438202	(0.42,0.455]	chr22	1574926	7	UTR3	UTR3:EXON_MRNA	XBP1	ENSG00000100219.16	ENST00000216037.10:ENST00000403532.7:ENST00000484256.1:ENST00000611155.4:ENST00000405219.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.59462	3.1115899999999996	3.62856	0.0062772	4.02604e-4	0.0445415	0.00549837
chr17	63831326	63831425	16319019	0	+	0.494949	(0.49,0.53]	chr17	1323954	1	CDS	CDS:UTR3:EXON_MRNA	PSMC5	ENSG00000087191.13	ENST00000310144.11:ENST00000579147.5:ENST00000580864.5:ENST00000584536.5:ENST00000585242.5:ENST00000578570.5:ENST00000375812.8:ENST00000581882.5:ENST00000579031.5:ENST00000584880.5:ENST00000580063.1:ENST00000584657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.70307	3.11144	3.51981	0.00363585	6.88328e-4	0.0298137	0.00876781
chr11	57817583	57817681	11953252	0	+	0.418367	(0.39,0.42]	chr11	914890	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.62131	3.1113099999999996	3.60131	0.00609677	4.60576e-4	0.0439136	0.00611208
chr1	241632410	241632509	1578037	0	-	0.363636	(0.36,0.39]	chr1	157611	37	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	53	2	2.52546	3.1112849999999996	3.69711	4.15364e-4	1.63058e-5	0.00608105	4.12921e-4
chr10	123162683	123162755	11299046	0	+	0.458333	(0.455,0.49]	chr10	861582	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2:ENST00000481952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	2.92901	3.111255	3.2935	0.00141135	3.58585e-5	0.0151901	7.84153e-4
chrX	16845827	16845882	18971692	0	-	0.454545	(0.42,0.455]	chrX	1615435	1	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5:ENST00000481586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	2.47379	3.11119	3.74859	0.00996858	1.15347e-5	0.0621728	3.09736e-4
chr19	50315187	50315285	17609633	0	-	0.489796	(0.455,0.49]	chr19	1484771	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KCNC3	ENSG00000131398.15	ENST00000477616.2:ENST00000376959.6:ENST00000474951.1:ENST00000670667.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	3.02161	3.11115	3.20069	0.00285821	2.07727e-4	0.0245841	0.00351752
chr11	118505163	118505262	12158967	0	+	0.393939	(0.39,0.42]	chr11	937104	29	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000528278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.70591	3.111135	3.51636	0.0185716	6.99837e-4	0.0932453	0.00846751
chr3	122425688	122425788	4411551	0	-	0.41	(0.39,0.42]	chr3	366116	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000470904.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.70591	3.111135	3.51636	0.0185716	6.99837e-4	0.0932453	0.00846751
chr8	38212623	38212720	9292353	0	+	0.412371	(0.39,0.42]	chr8	710695	23	UTR3	UTR3:EXON_MRNA	BAG4	ENSG00000156735.11	ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.70591	3.111135	3.51636	0.0185716	6.99837e-4	0.0932453	0.00846751
chr15	51910588	51910686	14933974	0	+	0.377551	(0.36,0.39]	chr15	1174120	19	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5:ENST00000560725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	2.19	3.1110999999999995	4.0322	0.0111937	0.00588589	0.0665375	0.0427941
chr7	66553773	66553870	8836646	0	-	0.360825	(0.36,0.39]	chr7	674887	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	GS1-124K5.12:RP4-756H11.5	ENSG00000229180.7:ENSG00000275400.1	ENST00000639011.1:ENST00000649635.1:ENST00000638711.1:ENST00000622243.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene:processed_pseudogene	processed_transcript:processed_pseudogene	3	20	2	2.19	3.1110999999999995	4.0322	0.0111937	0.00588589	0.0665375	0.0427941
chr8	38105950	38106030	9291424	0	+	0.525	(0.49,0.53]	chr8	710556	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000517719.5:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	3.10321	3.111065	3.11892	0.00398244	1.1948e-4	0.0322851	0.00208475
chr22	36281477	36281576	18497992	0	-	0.323232	(0.29,0.33]	chr22	1578077	3	UTR3	UTR3:EXON_MRNA	MYH9	ENSG00000100345.22	ENST00000216181.11	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.24226	3.110835	3.97941	0.0306054	5.81801e-5	0.130226	0.00116944
chr17	50382306	50382403	16585116	0	-	0.443299	(0.42,0.455]	chr17	1363112	12	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	6	49	2	2.69502	3.110805	3.52659	6.87022e-4	2.01357e-4	0.00876781	0.00317801
chr19	49011191	49011250	17368297	0	+	0.559322	(0.53,0.59]	chr19	1442321	1	CDS	CDS:UTR3:EXON_MRNA	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000595090.6:ENST00000596247.5:ENST00000221413.10:ENST00000594338.1:ENST00000627972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	2.28509	3.110785	3.93648	0.0019345	8.06385e-5	0.0184806	0.00167444
chr6	41789791	41789879	7150336	0	+	0.352273	(0.33,0.36]	chr6	551654	4	UTR3	UTR3:EXON_MRNA	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	67	2	2.90802	3.110735	3.31345	2.45614e-5	1.26992e-5	5.74409e-4	3.67844e-4
chr5	72220060	72220155	6631312	0	-	0.536842	(0.53,0.59]	chr5	512531	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000515226.5:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	57	2	2.69635	3.1106499999999997	3.52495	0.00112127	5.15316e-5	0.0128408	0.00105223
chr7	92113664	92113764	8922101	0	-	0.36	(0.33,0.36]	chr7	680630	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1:ENST00000482924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	42	2	2.78095	3.1105099999999997	3.44007	0.00388614	1.36013e-5	0.0322851	3.54469e-4
chr11	63681636	63681736	11976069	0	+	0.74	(0.59,1]	chr11	918326	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	121	2	2.62678	3.1104950000000002	3.59421	5.07578e-4	6.47795e-5	0.00710966	0.00126536
chr22	19172646	19172742	18294843	0	+	0.541667	(0.53,0.59]	chr22	1552668	14	EXON_LNCRNA	EXON_LNCRNA	LINC01311	ENSG00000260924.2	ENST00000565162.2	lncRNA	lncRNA	lncRNA	lncRNA	5	57	2	3.03385	3.11046	3.18707	3.55681e-4	1.81515e-4	0.00539248	0.00293332
chr11	85981871	85981937	12525959	0	-	0.454545	(0.42,0.455]	chr11	972192	1	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	90	2	1.78521	3.110425	4.43564	0.0195653	3.69802e-9	0.0951892	3.27788e-7
chr16	69462429	69462481	15723943	0	+	0.442308	(0.42,0.455]	chr16	1252040	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6:ENST00000561792.6:ENST00000568237.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.50649	3.11007	3.71365	0.0302857	2.63375e-4	0.130016	0.00427022
chr7	135617089	135617168	8553011	0	+	0.379747	(0.36,0.39]	chr7	652822	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.88762	3.1100149999999998	3.33241	0.00193631	4.35345e-4	0.0192272	0.005869
chr1	1756502	1756579	829409	0	-	0.493506	(0.49,0.53]	chr1	82872	1	CDS	CDS:UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000342348.9:ENST00000469045.5:ENST00000477235.5:ENST00000489538.1:ENST00000497186.5:ENST00000492845.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr1	33024441	33024504	924579	0	-	0.492063	(0.49,0.53]	chr1	97548	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr1	113119426	113119523	413618	0	+	0.525773	(0.49,0.53]	chr1	40843	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr1	154551920	154551979	1303410	0	-	0.508475	(0.49,0.53]	chr1	131309	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2Q1	ENSG00000160714.10	ENST00000292211.5:ENST00000467683.5:ENST00000483639.1:ENST00000474181.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr10	99720986	99721068	11658635	0	-	0.52439	(0.49,0.53]	chr10	888165	1	CDS	CDS:UTR3:EXON_MRNA	RP11-483F11.9:COX15	ENSG00000285932.1:ENSG00000014919.13	ENST00000649102.1:ENST00000016171.6:ENST00000370483.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr11	3679630	3679708	12237754	0	-	0.5	(0.49,0.53]	chr11	945495	2	CDS	CDS:UTR3:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000533346.5:ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000469881.1:ENST00000524563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr11	61356529	61356613	12404449	0	-	0.511905	(0.49,0.53]	chr11	960334	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000542361.5:ENST00000537364.5:ENST00000535177.1:ENST00000539128.5:ENST00000538263.5:ENST00000542411.5:ENST00000536687.1:ENST00000545361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr11	130878421	130878521	12660804	0	-	0.53	(0.49,0.53]	chr11	982865	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SNX19	ENSG00000120451.11	ENST00000265909.9:ENST00000527116.5:ENST00000526579.5:ENST00000534726.5:ENST00000426933.6:ENST00000533318.5:ENST00000530330.1:ENST00000528555.5:ENST00000530356.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr12	124431683	124431782	13598736	0	-	0.494949	(0.49,0.53]	chr12	1071596	5	INTRON	INTRON	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000429285.6:ENST00000458234.5:ENST00000420698.5:ENST00000542927.5:ENST00000448008.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr15	43420648	43420735	15246831	0	-	0.517241	(0.49,0.53]	chr15	1201359	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000411772.5:ENST00000450115.6:ENST00000572085.5:ENST00000571145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr15	50202603	50202645	14925349	0	+	0.5	(0.49,0.53]	chr15	1173415	1	CDS	CDS:EXON_MRNA:INTRON	SLC27A2	ENSG00000140284.11	ENST00000267842.10:ENST00000380902.8:ENST00000544960.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr15	84782967	84783064	15073211	0	+	0.494845	(0.49,0.53]	chr15	1185782	3	CDS	CDS:EXON_MRNA	ZNF592	ENSG00000166716.10	ENST00000560079.7:ENST00000559607.1:ENST00000299927.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr16	1365945	1366043	15820299	0	-	0.520408	(0.49,0.53]	chr16	1260983	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000248104.11:ENST00000403703.5:ENST00000562537.1:ENST00000674376.1:ENST00000397464.5:ENST00000508903.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr16	68228362	68228462	15715301	0	+	0.53	(0.49,0.53]	chr16	1251066	20	UTR3	UTR3:EXON_MRNA	NFATC3	ENSG00000072736.19	ENST00000346183.8:ENST00000349223.9:ENST00000329524.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr17	50982597	50982672	16586275	0	-	0.493333	(0.49,0.53]	chr17	1363348	2	CDS	CDS:EXON_MRNA:INTRON	SPAG9	ENSG00000008294.21	ENST00000262013.12:ENST00000618113.4:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000513746.6:ENST00000511312.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr20	62279156	62279249	17861087	0	+	0.494624	(0.49,0.53]	chr20	1509922	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1:ENST00000621075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr22	43166819	43166918	18527851	0	-	0.494949	(0.49,0.53]	chr22	1582334	3	UTR3	UTR3:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr3	25736076	25736149	4093920	0	-	0.506849	(0.49,0.53]	chr3	342266	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NGLY1	ENSG00000151092.18	ENST00000280700.10:ENST00000428257.5:ENST00000675217.1:ENST00000676225.1:ENST00000493324.5:ENST00000396649.7:ENST00000675178.1:ENST00000675680.1:ENST00000308710.9:ENST00000280699.13:ENST00000496726.5:ENST00000674841.1:ENST00000675234.1:ENST00000463611.2:ENST00000417874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr6	33264781	33264840	7668885	0	-	0.525424	(0.49,0.53]	chr6	587385	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000493379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chrX	136667531	136667630	19249213	0	-	0.494949	(0.49,0.53]	chrX	1635284	21	UTR3	UTR3:EXON_MRNA	ARHGEF6	ENSG00000129675.16	ENST00000370622.5:ENST00000370620.5:ENST00000250617.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.48488	3.10991	3.73494	0.032052	0.0189345	0.133433	0.0934721
chr9	100022133	100022226	10772938	0	-	0.44086	(0.42,0.455]	chr9	815463	2	CDS	CDS:EXON_MRNA	ERP44	ENSG00000023318.8	ENST00000262455.7	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	2.99081	3.10976	3.22871	1.56448e-5	1.31513e-5	4.38216e-4	3.45397e-4
chr2	43224418	43224513	2618848	0	-	0.736842	(0.59,1]	chr2	235740	1	CDS	CDS:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.47837	3.109605	3.74084	0.00970721	4.03818e-4	0.0608296	0.00550292
chr1	151053130	151053228	1291636	0	-	0.622449	(0.59,1]	chr1	128778	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5:ENST00000492796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	35	2	1.67735	3.10959	4.54183	0.0534288	0.0070583	0.184995	0.0478044
chr19	804373	804455	17189502	0	+	0.634146	(0.59,1]	chr19	1411023	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	63	2	3.06258	3.10945	3.15632	0.00616167	6.43048e-4	0.0438642	0.00850474
chr12	98548057	98548157	13036866	0	+	0.27	[0,0.29]	chr12	1014988	3	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.99114	3.109375	3.22761	2.71917e-4	1.46901e-4	0.00404713	0.0026854
chr6	30619546	30619601	7111665	0	+	0.418182	(0.39,0.42]	chr6	544910	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000492316.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.88836	3.10908	3.3298	0.0102432	0.00165391	0.062872	0.0163614
chr6	154802058	154802147	7501714	0	+	0.494382	(0.49,0.53]	chr6	572857	2	CDS	CDS:EXON_MRNA	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.26641	3.109005	3.9516	0.0190546	6.96459e-5	0.093872	0.0013446
chr1	32774176	32774275	130816	0	+	0.474747	(0.455,0.49]	chr1	16163	14	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	1.88914	3.108985	4.32883	0.0127583	6.31002e-6	0.0719798	1.88287e-4
chr7	135619511	135619600	8553040	0	+	0.494382	(0.49,0.53]	chr7	652838	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.6129	3.10883	3.60476	0.0052746	4.52633e-4	0.0389109	0.00642319
chrX	30854597	30854693	19012420	0	-	0.46875	(0.455,0.49]	chrX	1617576	6	CDS	CDS:EXON_MRNA	TAB3	ENSG00000157625.15	ENST00000378933.5:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	3.0141	3.10879	3.20348	9.3076e-4	3.27782e-4	0.0111917	0.0046686
chr16	70561629	70561706	15730062	0	+	0.493506	(0.49,0.53]	chr16	1252981	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	2.6922	3.10867	3.52514	4.50155e-4	4.98361e-5	0.00605268	0.0011306
chr1	32172783	32172883	127036	0	+	0.48	(0.455,0.49]	chr1	15636	20	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	54	2	2.97397	3.108415	3.24286	2.77105e-4	8.30118e-5	0.00444204	0.00156827
chr19	4095387	4095449	17430578	0	-	0.532258	(0.53,0.59]	chr19	1454783	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP2K2	ENSG00000126934.14	ENST00000262948.10:ENST00000601786.5:ENST00000600584.5:ENST00000394867.8:ENST00000597263.5:ENST00000599021.1:ENST00000595715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	1.65775	3.108175	4.5586	0.0573191	0.00161229	0.196623	0.0169168
chr20	49952435	49952531	17814641	0	+	0.5	(0.49,0.53]	chr20	1506968	3	UTR3	UTR3:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000622999.3:ENST00000244061.6:ENST00000622920.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	2.81492	3.10809	3.40126	6.31846e-4	1.73901e-5	0.00837621	4.37068e-4
chr7	50401720	50401820	8279148	0	+	0.33	(0.29,0.33]	chr7	630737	12	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.45591	3.1079999999999997	3.76009	0.00406506	3.08518e-4	0.032143	0.00476847
chrX	139750088	139750152	19258765	0	-	0.453125	(0.42,0.455]	chrX	1635843	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000327569.7:ENST00000361648.6:ENST00000460773.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.7523	3.107895	3.46349	0.0153283	9.0025e-4	0.0828908	0.0102618
chr11	118602100	118602194	12159749	0	+	0.382979	(0.36,0.39]	chr11	937279	5	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	22	157	2	3.05347	3.107725	3.16198	1.00252e-6	1.78247e-7	4.44208e-5	9.2184e-6
chr15	72774871	72774964	15371115	0	-	0.537634	(0.53,0.59]	chr15	1214599	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1:ENST00000569058.1:ENST00000566509.5:ENST00000562286.1:ENST00000562823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	37	2	2.47	3.10771	3.74542	0.0089333	2.30148e-4	0.0567495	0.00352524
chr3	196049578	196049676	4663136	0	-	0.428571	(0.42,0.455]	chr3	385550	4	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	2.81083	3.10771	3.40459	1.05629e-4	4.097e-6	0.00204591	1.31594e-4
chr12	12642775	12642872	12739310	0	+	0.329897	(0.29,0.33]	chr12	990284	9	UTR3	UTR3:EXON_MRNA	CREBL2	ENSG00000111269.3	ENST00000228865.3	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.7441	3.107675	3.47125	0.00173745	7.49757e-5	0.0179204	0.00142868
chr5	154818875	154818971	6929600	0	-	0.59375	(0.59,1]	chr5	530568	5	UTR3	UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.09833	3.107525	4.11672	0.0222273	0.0150311	0.105595	0.0816517
chr7	97858341	97858405	8940676	0	-	0.546875	(0.53,0.59]	chr7	682259	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	28	2	1.77634	3.107485	4.43863	0.025972	0.00254763	0.117079	0.0233955
chr6	21231039	21231136	7082595	0	+	0.309278	(0.29,0.33]	chr6	541578	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1:ENST00000476517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	3.08261	3.1073649999999997	3.13212	0.00551048	0.0048227	0.0414592	0.0365653
chr2	206221314	206221394	2337798	0	+	0.5375	(0.53,0.59]	chr2	211095	1	EXON_SMALL	EXON_SMALL:INTRON	GPR1-AS:RN7SKP200	ENSG00000279220.4:ENSG00000222496.1	ENST00000648653.1:ENST00000644292.1:ENST00000410564.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	3	37	2	2.99511	3.10726	3.21941	0.00266171	9.46531e-4	0.0240332	0.010681
chr9	112333477	112333570	10804040	0	-	0.709677	(0.59,1]	chr9	818509	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	444	2	2.99788	3.107095	3.21631	8.23431e-6	4.57618e-7	2.56208e-4	2.05159e-5
chr12	6983485	6983539	13189018	0	-	0.425926	(0.42,0.455]	chr12	1032872	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	LPCAT3	ENSG00000111684.11	ENST00000261407.9:ENST00000535479.5:ENST00000540090.5:ENST00000543794.5:ENST00000536797.5:ENST00000536971.1:ENST00000538910.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr16	53304443	53304534	15667423	0	+	0.428571	(0.42,0.455]	chr16	1245254	9	CDS	CDS:EXON_MRNA:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000565803.2:ENST00000219084.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr16	75363931	75364031	16036613	0	-	0.43	(0.42,0.455]	chr16	1287986	10	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr3	60121637	60121737	4221112	0	-	0.43	(0.42,0.455]	chr3	355981	409	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr3	98521341	98521424	4318938	0	-	0.445783	(0.42,0.455]	chr3	360223	2	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLDND1:RP11-227H4.8	ENSG00000080822.17:ENSG00000285635.1	ENST00000502288.5:ENST00000507874.5:ENST00000394180.6:ENST00000394181.6:ENST00000394185.6:ENST00000341181.11:ENST00000503004.5:ENST00000510545.5:ENST00000511081.5:ENST00000513287.5:ENST00000511667.5:ENST00000513452.5:ENST00000502299.5:ENST00000508902.5:ENST00000512147.5:ENST00000510541.5:ENST00000508503.5:ENST00000514537.5:ENST00000507411.5:ENST00000515620.5:ENST00000507944.5:ENST00000508659.5:ENST00000503621.5:ENST00000503799.5:ENST00000508071.1:ENST00000513988.1:ENST00000502980.1:ENST00000512905.6:ENST00000506575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr4	17607489	17607589	4734281	0	+	0.45	(0.42,0.455]	chr4	392777	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	LAP3	ENSG00000002549.13	ENST00000226299.9:ENST00000618908.4:ENST00000606142.5:ENST00000503467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr7	152177435	152177531	9135334	0	-	0.447917	(0.42,0.455]	chr7	698399	14	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.7523	3.106995	3.46169	0.03884	0.0153283	0.149227	0.0828908
chr19	44914891	44914949	17349742	0	+	0.586207	(0.53,0.59]	chr19	1439251	1	CDS_START	CDS_START:CDS:EXON_MRNA	CTB-129P6.7:APOC1	ENSG00000280087.1:ENSG00000130208.10	ENST00000623895.1:ENST00000588750.5:ENST00000588802.5:ENST00000592535.6:ENST00000592885.5:ENST00000589781.1:ENST00000589078.1:ENST00000592176.1:ENST00000586638.5:ENST00000590334.5	protein_coding	protein_coding	protein_coding:TEC	protein_coding:nonsense_mediated_decay:TEC	4	44	2	2.22207	3.1069899999999997	3.99191	0.00910511	5.86351e-5	0.0576716	0.00129243
chr15	90088430	90088502	15437616	0	-	0.527778	(0.49,0.53]	chr15	1221173	2	CDS	CDS:UTR3:EXON_MRNA	IDH2	ENSG00000182054.10	ENST00000330062.8:ENST00000560061.1:ENST00000559482.5:ENST00000540499.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.72252	3.106975	3.49143	0.0161474	6.13943e-5	0.0860154	0.00122382
chr11	102448811	102448868	12563213	0	-	0.45614	(0.455,0.49]	chr11	974368	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	36	2	2.65352	3.1069449999999996	3.56037	0.00143499	5.72551e-4	0.0147046	0.0078026
chr10	103389103	103389166	11672856	0	-	0.396825	(0.39,0.42]	chr10	890268	2	UTR3	UTR3:EXON_MRNA	ATP5MK	ENSG00000173915.16	ENST00000369825.6:ENST00000369815.6:ENST00000309579.7:ENST00000337003.4:ENST00000369811.5	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	2.76711	3.1068350000000002	3.44656	3.61954e-4	1.26334e-5	0.00544764	3.33251e-4
chr3	152465480	152465580	3818533	0	+	0.39	(0.36,0.39]	chr3	325707	32	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	59	2	2.8753	3.10656	3.33782	6.48632e-5	3.59965e-5	0.00126613	8.71532e-4
chr8	60621674	60621772	9353526	0	+	0.285714	[0,0.29]	chr8	715323	10	UTR3	UTR3:EXON_MRNA	RAB2A	ENSG00000104388.15	ENST00000262646.12	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.96533	3.10654	3.24775	0.0024246	2.91652e-4	0.0227938	0.00428484
chr11	7996022	7996120	11789507	0	+	0.469388	(0.455,0.49]	chr11	902523	1	UTR3	UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.27492	3.10643	3.93794	0.0193827	7.43966e-5	0.0943643	0.00142165
chr7	92610475	92610575	8924944	0	-	0.32	(0.29,0.33]	chr7	681136	57	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.94844	3.10633	3.26422	0.00217122	2.56761e-4	0.0208941	0.00385453
chr11	18403737	18403763	11831522	0	+	0.5	(0.49,0.53]	chr11	906024	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	LDHA	ENSG00000134333.14	ENST00000396222.6:ENST00000430553.6:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000227157.8:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7:ENST00000538451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	138	2	2.01318	3.10618	4.19918	0.00181532	1.05812e-9	0.0183913	1.10262e-7
chr12	110346000	110346059	13085908	0	+	0.59322	(0.59,1]	chr12	1020550	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	103	2	2.46441	3.10618	3.74795	6.49832e-4	4.30112e-4	0.00804323	0.00620274
chrX	77875512	77875597	19129455	0	-	0.388235	(0.36,0.39]	chrX	1626907	2	CDS	CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1:ENST00000373336.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.38564	3.105885	3.82613	0.0476159	1.39565e-4	0.17993	0.0023599
chr19	10259616	10259713	17224489	0	+	0.618557	(0.59,1]	chr19	1418474	1	CDS	CDS:UTR3:EXON_MRNA	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000307422.9:ENST00000253099.11:ENST00000393733.6	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.84944	3.105835	3.36223	0.0128238	0.00203572	0.0719798	0.0192213
chr6	149684198	149684296	8018509	0	-	0.510204	(0.49,0.53]	chr6	612683	12	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5:ENST00000392273.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	2.99849	3.10583	3.21317	0.00630123	3.08783e-4	0.0445415	0.00445935
chr14	102049511	102049611	14495912	0	+	0.58	(0.53,0.59]	chr14	1133277	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	1.90953	3.10574	4.30195	0.0517711	0.00421989	0.193577	0.0328662
chr17	44352552	44352652	16234938	0	+	0.68	(0.59,1]	chr17	1314586	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000639447.1:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.9228	3.105705	3.28861	0.00981698	0.0028753	0.0612992	0.0256141
chr5	10264971	10265066	5874673	0	+	0.273684	[0,0.29]	chr5	461895	3	UTR3	UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000280326.9:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	3.0735	3.105515	3.13753	0.00785095	0.00396668	0.0520241	0.0317467
chr18	45984829	45984929	17102852	0	-	0.44	(0.42,0.455]	chr18	1404258	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PSTPIP2	ENSG00000152229.18	ENST00000409746.5:ENST00000589328.5:ENST00000588801.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.91373	3.105465	3.2972	0.00892357	1.93851e-4	0.0567495	0.00307904
chr7	108510418	108510511	8457615	0	+	0.44086	(0.42,0.455]	chr7	646341	3	EXON_PSEUDO	EXON_PSEUDO	RPL7P32	ENSG00000231006.1	ENST00000457119.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	33	2	2.91373	3.105465	3.2972	0.00892357	1.93851e-4	0.0567495	0.00307904
chr12	120173652	120173739	13579500	0	-	0.505747	(0.49,0.53]	chr12	1068734	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.92759	3.105455	4.28332	0.0267071	0.00338762	0.118504	0.0288632
chr3	152414940	152414991	3818014	0	+	0.509804	(0.49,0.53]	chr3	325653	1	CDS	CDS:UTR5:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.92759	3.105455	4.28332	0.0267071	0.00338762	0.118504	0.0288632
chr1	47216485	47216583	985514	0	-	0.55102	(0.53,0.59]	chr1	104046	3	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	7	79	2	2.54082	3.104985	3.66915	0.00100675	2.76654e-6	0.011962800000000001	9.47025e-5
chr16	20792065	20792129	15582966	0	+	0.375	(0.36,0.39]	chr16	1234801	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000562251.5:ENST00000567387.5:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	3.02315	3.1047849999999997	3.18642	0.00359152	8.65481e-4	0.0302391	0.0100741
chr22	21805849	21805944	18442819	0	-	0.484211	(0.455,0.49]	chr22	1572543	1	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	22	194	2	2.8236	3.10449	3.38538	8.28246e-6	1.16527e-8	2.57591e-4	8.83208e-7
chr5	140528847	140528942	6255124	0	+	0.505263	(0.49,0.53]	chr5	487634	8	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	2.87563	3.104435	3.33324	0.00162947	1.52968e-4	0.0169972	0.00254995
chr2	24018533	24018633	1677520	0	+	0.64	(0.59,1]	chr2	164015	4	EXON_MRNA	EXON_MRNA:INTRON	MFSD2B	ENSG00000205639.12	ENST00000669179.1:ENST00000406420.7:ENST00000338315.6:ENST00000495018.1:ENST00000469562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	153	2	2.92325	3.104415	3.28558	3.5027e-4	3.13869e-5	0.00532165	6.99523e-4
chr1	156135249	156135312	486125	0	+	0.650794	(0.59,1]	chr1	51282	2	CDS	CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000515824.1:ENST00000368298.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	127	2	3.05233	3.1043250000000002	3.15632	6.43048e-4	4.37725e-5	0.00850474	9.2091e-4
chr6	75243773	75243830	7800231	0	-	0.561404	(0.53,0.59]	chr6	597639	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6:ENST00000377978.3:ENST00000481061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.89916	3.104295	3.30943	0.00890406	0.0018255	0.0565003	0.0183913
chr15	60349135	60349197	15316710	0	-	0.548387	(0.53,0.59]	chr15	1208916	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.90978	3.104265	3.29875	0.00857883	0.00191422	0.0552386	0.018324
chr7	105112857	105112951	8449886	0	+	0.553191	(0.53,0.59]	chr7	645366	12	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.90978	3.104265	3.29875	0.00857883	0.00191422	0.0552386	0.018324
chr8	38347879	38347975	9796169	0	-	0.395833	(0.39,0.42]	chr8	740758	5	CDS	CDS:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.18155	3.10421	4.02687	0.0283931	4.35816e-5	0.127654	0.00091744700000000005
chr10	42567034	42567124	11017829	0	+	0.544444	(0.53,0.59]	chr10	838095	5	EXON_PSEUDO	EXON_PSEUDO	EIF3LP2	ENSG00000233837.1	ENST00000457262.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	46	2	2.98881	3.10411	3.21941	0.00266171	2.35204e-4	0.0240332	0.00356397
chr12	54399644	54399701	13343755	0	-	0.508772	(0.49,0.53]	chr12	1049761	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000547197.1:ENST00000552431.5:ENST00000552387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.95291	3.104025	3.25514	0.00227467	0.00119735	0.0209546	0.0134293
chr2	182925001	182925101	3059897	0	-	0.38	(0.36,0.39]	chr2	271262	160	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	2.43116	3.10394	3.77672	0.00129293	1.05661e-6	0.0141517	4.18995e-5
chr1	37980654	37980724	950211	0	-	0.428571	(0.42,0.455]	chr1	100106	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000488934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.36247	3.1039250000000003	3.84538	0.0462889	1.2691e-4	0.176878	0.00219756
chr1	47250935	47251035	985689	0	-	0.45	(0.42,0.455]	chr1	104088	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.36247	3.1039250000000003	3.84538	0.0462889	1.2691e-4	0.176878	0.00219756
chr2	173909940	173910040	3019699	0	-	0.39	(0.36,0.39]	chr2	267354	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000651846.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000465379.1:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	3.02397	3.103725	3.18348	0.00674398	0.00310315	0.0461258	0.0263402
chr6	36488167	36488266	7134473	0	+	0.383838	(0.36,0.39]	chr6	549568	11	UTR3	UTR3:EXON_MRNA	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000449081.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	3.02397	3.103725	3.18348	0.00674398	0.00310315	0.0461258	0.0263402
chr8	123336372	123336452	10057032	0	-	0.3625	(0.36,0.39]	chr8	756615	1	CDS	CDS:UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	3.02397	3.103725	3.18348	0.00674398	0.00310315	0.0461258	0.0263402
chr11	43446153	43446247	11920928	0	+	0.531915	(0.53,0.59]	chr11	911005	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	1.76849	3.10356	4.43863	0.0420665	0.00254763	0.158792	0.0233955
chr12	6870665	6870759	12714957	0	+	0.585106	(0.53,0.59]	chr12	987157	4	UTR3	UTR3:EXON_MRNA	TPI1	ENSG00000111669.15	ENST00000229270.8:ENST00000613953.4:ENST00000396705.10:ENST00000535434.5	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	3.0459	3.1035	3.1611	1.68929e-4	8.49658e-5	0.00297945	0.00159594
chr3	179616992	179617044	3928840	0	+	0.403846	(0.39,0.42]	chr3	330250	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5:ENST00000491054.1:ENST00000471112.1:ENST00000476587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	2.48908	3.1032349999999997	3.71739	0.0101318	1.41698e-5	0.0626311	3.66245e-4
chr4	73091531	73091627	5466126	0	-	0.479167	(0.455,0.49]	chr4	437754	10	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	8	71	2	2.93103	3.10296	3.27489	1.15066e-4	1.06338e-5	0.00219531	2.90771e-4
chr4	38697361	38697460	4796660	0	+	0.40404	(0.39,0.42]	chr4	395582	2	UTR3	UTR3:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	2.53501	3.10292	3.67083	3.43777e-4	1.93844e-5	0.00522565	4.72961e-4
chr15	74417389	74417445	15374508	0	-	0.553571	(0.53,0.59]	chr15	1215183	2	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	1.89806	3.10291	4.30776	0.0532477	0.00407289	0.184818	0.0324137
chr5	108593877	108593967	6137536	0	+	0.433333	(0.42,0.455]	chr5	479731	4	EXON_PSEUDO	EXON_PSEUDO	RP11-120B7.1	ENSG00000244245.1	ENST00000466800.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	70	2	2.63704	3.102775	3.56851	8.57576e-5	3.9883e-5	0.00160731	9.51945e-4
chr8	127736593	127736623	9612631	0	+	0.433333	(0.42,0.455]	chr8	728478	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000641036.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.32629	3.102755	3.87922	0.0153564	1.04705e-4	0.0832114	0.0020295
chr3	17160572	17160669	4059126	0	-	0.443299	(0.42,0.455]	chr3	341127	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	35	2	2.40664	3.102725	3.79881	0.00445101	1.65328e-4	0.0340751	0.0029267300000000002
chr1	150578325	150578408	1288963	0	-	0.421687	(0.42,0.455]	chr1	128253	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	1.96397	3.1026499999999997	4.24133	0.0138503	0.00326918	0.0759947	0.0282494
chr7	121297342	121297442	8496843	0	+	0.28	[0,0.29]	chr7	648451	18	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	3.0925	3.1025349999999996	3.11257	0.00120521	4.31357e-5	0.0134827	9.13128e-4
chr1	62451621	62451712	237176	0	+	0.318681	(0.29,0.33]	chr1	27734	8	UTR3	UTR3:EXON_MRNA	USP1	ENSG00000162607.13	ENST00000371146.5:ENST00000339950.5	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.74949	3.1024149999999997	4.45534	0.0162875	0.00110984	0.0866586	0.0127344
chr7	144647880	144647979	9120722	0	-	0.515152	(0.49,0.53]	chr7	696680	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	TPK1:EEF1A1P10	ENSG00000196511.14:ENSG00000243746.1	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5:ENST00000475365.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	28	2	2.38097	3.102135	3.8233	0.0425419	1.44192e-4	0.167547	0.00242438
chr1	10420320	10420415	39921	0	+	0.336842	(0.33,0.36]	chr1	4839	7	UTR3	UTR3:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000270776.13	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.63456	3.1020250000000003	3.56949	0.00707461	5.48184e-4	0.0478528	0.00697082
chr9	93446813	93446913	10741314	0	-	0.34	(0.33,0.36]	chr9	812980	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FAM120AOS	ENSG00000188938.17	ENST00000649557.1:ENST00000650398.1:ENST00000375412.11:ENST00000423591.5:ENST00000479094.5:ENST00000523407.1:ENST00000520403.1:ENST00000483149.6:ENST00000520470.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.63456	3.1020250000000003	3.56949	0.00707461	5.48184e-4	0.0478528	0.00697082
chr7	4865617	4865710	8656316	0	-	0.473118	(0.455,0.49]	chr7	661743	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RADIL:RPL22P16	ENSG00000157927.17:ENSG00000213935.3	ENST00000399583.4:ENST00000445392.5:ENST00000454916.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	6	58	2	2.92901	3.10195	3.27489	0.00141135	1.06338e-5	0.0151901	2.90771e-4
chr1	173962002	173962095	1373523	0	-	0.505376	(0.49,0.53]	chr1	140031	4	CDS	CDS:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	3.08487	3.101895	3.11892	0.00398244	6.09273e-4	0.0322851	0.00760626
chr11	61311839	61311895	12404014	0	-	0.571429	(0.53,0.59]	chr11	960208	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	2.89427	3.1018499999999998	3.30943	0.0018255	3.98634e-4	0.0183913	0.00546791
chr20	35381717	35381817	17953352	0	-	0.54	(0.53,0.59]	chr20	1520743	4	SS5_PROX	SS5_PROX:INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	2.89427	3.1018499999999998	3.30943	0.0018255	3.98634e-4	0.0183913	0.00546791
chr6	149594539	149594543	7481404	0	+	0.25	[0,0.29]	chr6	571727	1	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	RPS18P9	ENSG00000220848.5	ENST00000648980.1:ENST00000482817.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	5	34	2	2.96533	3.101685	3.23804	0.0024246	5.85812e-5	0.0227938	0.00117676
chr1	241497827	241497927	1577368	0	-	0.45	(0.42,0.455]	chr1	157508	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	2.22933	3.10152	3.97371	0.0102262	6.07552e-5	0.062872	0.00121305
chr10	70152375	70152475	11560404	0	-	0.38	(0.36,0.39]	chr10	879565	52	UTR3	UTR3:EXON_MRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000452767.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.53311	3.101445	3.66978	0.00345778	3.25031e-4	0.0293796	0.00463603
chr10	36522880	36522977	11455899	0	-	0.402062	(0.39,0.42]	chr10	873366	13	EXON_PSEUDO	EXON_PSEUDO	NAMPTP1	ENSG00000229644.6	ENST00000440465.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	2.2627100000000002	3.101335	3.93996	0.0192666	0.00841622	0.0966228	0.054565
chr15	65577955	65578053	14980172	0	+	0.408163	(0.39,0.42]	chr15	1177605	17	UTR3	UTR3:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000261875.10	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.2627100000000002	3.101335	3.93996	0.0192666	0.00841622	0.0966228	0.054565
chr1	235322815	235322915	1562238	0	-	0.49	(0.455,0.49]	chr1	156252	617	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	54	2	2.23785	3.101245	3.96464	0.0010058	6.27408e-5	0.0112071	0.00135074
chr19	53875175	53875272	17388676	0	+	0.587629	(0.53,0.59]	chr19	1446783	8	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	27	268	2	2.83575	3.1010999999999997	3.36645	1.08977e-6	4.51637e-8	4.74115e-5	2.81875e-6
chr6	33300086	33300184	7669203	0	-	0.571429	(0.53,0.59]	chr6	587559	5	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	9	92	2	2.5209	3.101075	3.68125	3.09131e-4	2.50815e-6	0.00446345	9.54774e-5
chr17	59663917	59663994	16295261	0	+	0.337662	(0.33,0.36]	chr17	1321653	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	48	2	2.91384	3.1009349999999998	3.28803	0.0021527	9.889e-6	0.0208395	2.73882e-4
chr1	15661524	15661622	69826	0	+	0.479592	(0.455,0.49]	chr1	7809	17	CDS	CDS:UTR3:EXON_MRNA	DDI2:RSC1A1	ENSG00000197312.12:ENSG00000215695.1	ENST00000480945.6:ENST00000345034.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.18128	3.1008400000000003	4.0204	0.0111696	0.00736097	0.0665375	0.0490627
chr10	71816678	71816773	11563212	0	-	0.610526	(0.59,1]	chr10	879958	5	UTR3	UTR3:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	20	372	2	2.83689	3.10071	3.36453	6.18282e-5	2.29297e-7	0.00133826	1.13617e-5
chr9	92242153	92242241	10737040	0	-	0.375	(0.36,0.39]	chr9	812249	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000375627.1:ENST00000474340.1:ENST00000684575.1:ENST00000467876.2:ENST00000473915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.39898	3.100615	3.80225	0.00221341	1.85308e-4	0.0204985	0.00322093
chr12	21635580	21635641	13236604	0	-	0.442623	(0.42,0.455]	chr12	1037942	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000648372.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	84	2	2.44756	3.10058	3.7536	9.46189e-4	2.51614e-7	0.0113687	1.23584e-5
chr7	107159969	107160066	8455218	0	+	0.268041	[0,0.29]	chr7	645853	5	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	2.88191	3.100395	3.31888	3.9147e-4	8.42251e-6	0.00583618	2.39255e-4
chr12	57489266	57489345	12902736	0	+	0.468354	(0.455,0.49]	chr12	1005344	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000550449.5:ENST00000546481.1:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551431.5:ENST00000547501.5:ENST00000553162.5:ENST00000551842.5:ENST00000548714.5:ENST00000547062.5:ENST00000551892.1:ENST00000552007.5:ENST00000630803.1:ENST00000630571.2:ENST00000548146.1:ENST00000553123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	2.95141	3.10027	3.24913	0.00239443	3.80375e-5	0.0225356	8.24619e-4
chr12	76048428	76048464	13423856	0	-	0.5	(0.49,0.53]	chr12	1056598	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	64	2	2.36712	3.100155	3.83319	3.13941e-4	1.34601e-4	0.00452711	0.00249552
chr9	127936555	127936655	10862704	0	-	0.57	(0.53,0.59]	chr9	823218	2	CDS	CDS:EXON_MRNA:INTRON	DPM2	ENSG00000136908.18	ENST00000314392.13:ENST00000495270.1:ENST00000470181.1:ENST00000473360.1:ENST00000373110.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.38191	3.10015	3.81839	0.0184435	0.00477439	0.0945306	0.0368489
chr1	161463075	161463175	1333827	0	-	0.67	(0.59,1]	chr1	136938	222	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	489	8744	2	2.76298	3.100085	3.43719	6.0581e-7	5.2101e-9	2.60934e-5	4.79353e-7
chr18	9134185	9134279	16751128	0	+	0.521277	(0.49,0.53]	chr18	1381386	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFV2:RP11-21J18.1	ENSG00000178127.13:ENSG00000265257.5	ENST00000318388.11:ENST00000578850.1:ENST00000579126.5:ENST00000400033.1:ENST00000465096.5:ENST00000474740.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	6	62	2	2.61777	3.09979	3.58181	0.00172617	4.83779e-6	0.0178146	1.51238e-4
chr11	68049151	68049222	11997823	0	+	0.633803	(0.59,1]	chr11	923472	2	CDS	CDS:EXON_MRNA	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000525724.5:ENST00000533005.5:ENST00000524870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.96416	3.0997299999999997	4.2353	0.044741	0.0165254	0.166115	0.0873033
chr20	38129924	38130022	17962930	0	-	0.591837	(0.59,1]	chr20	1522305	27	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	1.96416	3.0997299999999997	4.2353	0.044741	0.0165254	0.166115	0.0873033
chr12	54235667	54235766	13342883	0	-	0.393939	(0.39,0.42]	chr12	1049602	43	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.99911	3.0997	4.20029	0.0477207	1.46608e-5	0.17993	3.77398e-4
chr1	156324971	156325030	1314190	0	-	0.423729	(0.42,0.455]	chr1	133445	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.57051	3.099535	3.62856	0.0265466	4.02604e-4	0.120071	0.00549837
chr2	216116750	216116842	2379811	0	+	0.445652	(0.42,0.455]	chr2	213766	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	25	2	2.57051	3.099535	3.62856	0.0265466	4.02604e-4	0.120071	0.00549837
chrX	154785050	154785103	19279872	0	-	0.433962	(0.42,0.455]	chrX	1638747	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000493871.1:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	90	2	3.08182	3.099415	3.11701	6.80627e-4	1.34149e-6	0.00876781	5.1363300000000003e-05
chr2	74153610	74153709	2740206	0	-	0.323232	(0.29,0.33]	chr2	243880	12	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	9	52	2	2.86174	3.0994099999999998	3.33708	6.77341e-5	2.90171e-5	0.0014391	6.60417e-4
chr2	26191535	26191628	2565641	0	-	0.537634	(0.53,0.59]	chr2	230527	3	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	76	2	2.98531	3.09926	3.21321	7.82534e-5	6.1362e-5	0.00148756	0.00133162
chr4	59429	59492	4673551	0	+	0.47619	(0.455,0.49]	chr4	387009	1	CDS	CDS:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6:ENST00000502981.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.83792	3.0992100000000002	3.3605	0.0110512	0.00147278	0.0665375	0.0157578
chr6	31734153	31734208	7662148	0	-	0.490909	(0.49,0.53]	chr6	585140	1	CDS	CDS:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	9	84	2	2.66955	3.099125	3.5287	2.34589e-4	1.54299e-6	0.00356354	6.34179e-5
chr17	7930518	7930605	16431237	0	-	0.574713	(0.53,0.59]	chr17	1339992	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-1099M24.7:TRAPPC1	ENSG00000262730.1:ENSG00000170043.12	ENST00000573621.1:ENST00000540486.5:ENST00000571739.5:ENST00000303731.9:ENST00000575639.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.65894	3.09912	3.5393	0.0193255	6.46017e-4	0.0943643	0.00799743
chr6	30486497	30486590	7111188	0	+	0.537634	(0.53,0.59]	chr6	544740	7	EXON_PSEUDO	EXON_PSEUDO	RANP1	ENSG00000236603.2	ENST00000455094.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	29	2	2.65894	3.09912	3.5393	0.0193255	6.46017e-4	0.0943643	0.00799743
chr7	107324439	107324521	8984191	0	-	0.365854	(0.36,0.39]	chr7	687353	1	CDS	CDS:EXON_MRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.29974	3.099055	3.89837	0.00926291	9.25116e-5	0.0586162	0.00169222
chr10	75219138	75219215	11126489	0	+	0.428571	(0.42,0.455]	chr10	846649	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5:ENST00000413289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	73	2	2.73398	3.0990349999999998	3.46409	3.96345e-4	2.60265e-6	0.00587914	8.97428e-5
chr1	44221264	44221361	969812	0	-	0.659794	(0.59,1]	chr1	102351	3	UTR3	UTR3:EXON_MRNA	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.32455	3.09894	3.87333	0.0520547	0.0348991	0.193787	0.141505
chr12	15882386	15882466	12751328	0	+	0.65	(0.59,1]	chr12	991206	1	UTR5	UTR5:EXON_MRNA	STRAP	ENSG00000023734.11	ENST00000419869.7:ENST00000541731.1:ENST00000025399.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	22	2	2.32455	3.09894	3.87333	0.0520547	0.0348991	0.193787	0.141505
chr16	1770880	1770936	15822436	0	-	0.714286	(0.59,1]	chr16	1261527	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NME3	ENSG00000103024.8	ENST00000219302.8:ENST00000564628.1:ENST00000561637.5:ENST00000567271.1:ENST00000568561.5:ENST00000563498.1:ENST00000566600.1:ENST00000563367.1:ENST00000565379.1:ENST00000563854.1:ENST00000564252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	22	2	2.32455	3.09894	3.87333	0.0520547	0.0348991	0.193787	0.141505
chr5	44809062	44809145	5961511	0	+	0.698795	(0.59,1]	chr5	467190	1	CDS	CDS:EXON_MRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6	protein_coding	protein_coding	protein_coding	protein_coding	1	22	2	2.32455	3.09894	3.87333	0.0520547	0.0348991	0.193787	0.141505
chrX	135032383	135032483	18865048	0	+	0.64	(0.59,1]	chrX	1607585	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	22	2	2.32455	3.09894	3.87333	0.0520547	0.0348991	0.193787	0.141505
chr8	20220402	20220501	9220101	0	+	0.464646	(0.455,0.49]	chr8	704735	1	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	3.06914	3.098785	3.12843	0.00392855	6.6649e-4	0.0322851	0.00820018
chr1	67687660	67687717	265224	0	+	0.368421	(0.36,0.39]	chr1	29647	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000617962.2	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	1.89248	3.098755	4.30503	0.00453752	7.76959e-6	0.0346858	2.43892e-4
chr2	189923922	189924020	2274551	0	+	0.428571	(0.42,0.455]	chr2	206588	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	4	38	2	1.99701	3.09875	4.20049	0.0235036	1.49765e-5	0.111072	3.83096e-4
chr1	150560566	150560659	468536	0	+	0.505376	(0.49,0.53]	chr1	47508	5	UTR3	UTR3:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	48	2	1.9676	3.09873	4.22986	0.00876974	1.25249e-5	0.056115	3.30689e-4
chr3	179576216	179576311	3928575	0	+	0.473684	(0.455,0.49]	chr3	330181	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000487978.5:ENST00000467383.1:ENST00000467615.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.9967	3.098695	3.20069	0.00650423	0.00285821	0.0454205	0.0245841
chr1	148170762	148170861	457135	0	+	0.393939	(0.39,0.42]	chr1	45544	63	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr10	27165388	27165463	10987512	0	+	0.413333	(0.39,0.42]	chr10	835577	1	CDS	CDS:EXON_MRNA	MASTL	ENSG00000120539.15	ENST00000375946.8:ENST00000375940.9:ENST00000342386.10	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr4	40786538	40786624	4804514	0	+	0.418605	(0.39,0.42]	chr4	396525	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	NSUN7:ARL4AP2	ENSG00000179299.17:ENSG00000248780.1	ENST00000316607.5:ENST00000381782.7:ENST00000423784.5:ENST00000507378.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr6	143850130	143850218	7451489	0	+	0.397727	(0.39,0.42]	chr6	570126	1	CDS	CDS:EXON_MRNA	LTV1	ENSG00000135521.9	ENST00000367576.6	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr8	123023712	123023739	10055998	0	-	0.407407	(0.39,0.42]	chr8	756459	1	CDS	CDS:EXON_MRNA:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr9	4860875	4860975	10166159	0	+	0.4	(0.39,0.42]	chr9	765575	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000448872.6:ENST00000445485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr9	131577645	131577742	10870716	0	-	0.402062	(0.39,0.42]	chr9	824647	10	UTR3	UTR3:EXON_MRNA	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.70591	3.09868	3.49145	0.0350273	0.0185716	0.141505	0.0932453
chr14	67382446	67382501	14360551	0	+	0.418182	(0.39,0.42]	chr14	1122463	1	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1:ENST00000554332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.86895	3.0985300000000002	3.32811	0.00182819	0.00177945	0.0183913	0.0172974
chr1	32773978	32774077	130814	0	+	0.555556	(0.53,0.59]	chr1	16163	12	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.27113	3.09843	3.92573	0.0178853	8.62301e-5	0.0918323	0.00160749
chr18	210385	210439	16716193	0	+	0.37037	(0.36,0.39]	chr18	1379153	1	CDS	CDS:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.90398	3.09839	3.2928	2.65442e-4	1.32688e-4	0.004287	0.00228232
chr8	124546999	124547070	9593510	0	+	0.464789	(0.455,0.49]	chr8	727760	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000518008.5:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1:ENST00000518657.6:ENST00000678801.1:ENST00000678753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	1.96875	3.098135	4.22752	0.0480352	1.24055e-5	0.180552	3.28918e-4
chr1	148171060	148171160	457138	0	+	0.42	(0.39,0.42]	chr1	45544	66	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	4	21	2	1.91489	3.0980849999999998	4.28128	0.0197788	0.00342611	0.0960939	0.0283456
chr6	31535366	31535425	7661128	0	-	0.491525	(0.49,0.53]	chr6	584694	1	CDS	CDS:UTR3:EXON_MRNA	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.18417	3.09794	4.01171	0.00578816	4.88513e-5	0.0427749	0.00100497
chr6	31783095	31783186	7662447	0	-	0.516484	(0.49,0.53]	chr6	585295	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000474643.5:ENST00000461328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	2.59093	3.0978450000000004	3.60476	7.86196e-4	4.52633e-4	0.00929193	0.00642319
chr11	34100054	34100153	11905495	0	+	0.323232	(0.29,0.33]	chr11	909587	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	141	2	2.98242	3.0977249999999996	3.21303	2.49988e-6	4.82146e-8	9.53193e-5	2.98195e-6
chr7	103523460	103523531	8963488	0	-	0.507042	(0.49,0.53]	chr7	686142	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000681364.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000478148.2:ENST00000679952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.38683	3.09754	3.80825	0.012654	7.68944e-6	0.0718207	2.20857e-4
chr1	67411307	67411407	1079119	0	-	0.34	(0.33,0.36]	chr1	110137	36	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	18	116	2	2.86629	3.0974899999999996	3.32869	5.30781e-6	1.9237e-7	1.7831e-4	9.84227e-6
chr15	78542608	78542645	15040520	0	+	0.189189	[0,0.29]	chr15	1183202	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000560033.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000559437.5:ENST00000560737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	55	2	2.03026	3.097465	4.16467	0.00250982	9.35438e-8	0.0226168	5.89939e-6
chr19	14765319	14765397	17482518	0	-	0.538462	(0.53,0.59]	chr19	1464816	1	CDS	CDS:EXON_MRNA	ADGRE2	ENSG00000127507.18	ENST00000315576.8:ENST00000360222.8:ENST00000596991.6:ENST00000392965.7:ENST00000594294.5:ENST00000594076.5:ENST00000595839.5:ENST00000601345.5:ENST00000595208.5:ENST00000392962.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.515	3.097465	3.67993	0.0292633	3.22778e-4	0.129773	0.0046122
chr20	34292432	34292507	17946789	0	-	0.573333	(0.53,0.59]	chr20	1519981	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000468908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.515	3.097465	3.67993	0.0292633	3.22778e-4	0.129773	0.0046122
chr17	22204862	22204959	16168820	0	+	0.536082	(0.53,0.59]	chr17	1304328	9	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	43	2	2.43852	3.097335	3.75615	0.00373745	2.16536e-4	0.0303359	0.00361336
chr2	121761466	121761524	2034612	0	+	0.396552	(0.39,0.42]	chr2	192242	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TSN	ENSG00000211460.12	ENST00000455432.5:ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000478165.5:ENST00000490717.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	39	2	2.62131	3.097125	3.57294	0.00609677	3.67751e-5	0.0439136	8.00584e-4
chr17	78207109	78207208	16367951	0	+	0.626263	(0.59,1]	chr17	1329622	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AFMID	ENSG00000183077.15	ENST00000409257.9:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000587750.5:ENST00000589664.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	3.01792	3.09704	3.17616	0.00434232	0.00111911	0.0339139	0.0121894
chr7	105113139	105113233	8449889	0	+	0.56383	(0.53,0.59]	chr7	645366	15	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.90978	3.097	3.28422	0.00857883	2.10061e-4	0.0552386	0.00327655
chr5	138184238	138184321	6243550	0	+	0.542169	(0.53,0.59]	chr5	486359	1	CDS	CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.36991	3.09699	3.82407	0.0179666	0.00501452	0.0918323	0.0370872
chr3	49024730	49024802	4171674	0	-	0.486111	(0.455,0.49]	chr3	350217	2	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000466147.5:ENST00000463903.1:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000484872.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000481274.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	1.92777	3.09685	4.26593	0.0286531	0.00372962	0.128685	0.0302984
chr20	57488936	57489027	18021515	0	-	0.43956	(0.42,0.455]	chr20	1527361	7	EXON_PSEUDO	EXON_PSEUDO	HMGB1P1	ENSG00000124097.7	ENST00000522557.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	23	2	2.66697	3.09678	3.52659	0.0190326	6.87022e-4	0.0958835	0.00876781
chr19	48615371	48615447	17602789	0	-	0.631579	(0.59,1]	chr19	1482898	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000549533.1:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	21	362	2	3.07916	3.096615	3.11407	1.91204e-5	1.23126e-6	5.17658e-4	4.77134e-5
chr19	11110711	11110771	17230079	0	+	0.666667	(0.59,1]	chr19	1419574	2	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.85123	3.09647	3.34171	0.00234977	0.0022846	0.0222173	0.0209856
chr3	33825240	33825294	3399461	0	+	0.518519	(0.49,0.53]	chr3	295670	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000484478.5:ENST00000494810.1:ENST00000459659.1:ENST00000412887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.45798	3.09646	3.73494	0.0189345	0.00353238	0.0934721	0.029076
chr1	205790946	205791044	1462473	0	-	0.581633	(0.53,0.59]	chr1	147533	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4:ENST00000484228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.0289	3.096365	4.16383	0.0373899	0.00659193	0.146698	0.0454205
chr12	132770409	132770509	13624698	0	-	0.58	(0.53,0.59]	chr12	1073451	16	UTR3	UTR3:EXON_MRNA	GOLGA3	ENSG00000090615.15	ENST00000204726.8:ENST00000450791.7	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.0289	3.096365	4.16383	0.0373899	0.00659193	0.146698	0.0454205
chr2	135709484	135709536	2082798	0	+	0.538462	(0.53,0.59]	chr2	195368	2	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000445855.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.0289	3.096365	4.16383	0.0373899	0.00659193	0.146698	0.0454205
chr2	47800979	47801079	1788211	0	+	0.41	(0.39,0.42]	chr2	172666	21	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	2.25245	3.0962050000000003	3.93996	0.00841622	0.00427758	0.054565	0.0332717
chr12	69593561	69593613	12943490	0	+	0.5	(0.49,0.53]	chr12	1008992	2	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1:ENST00000553169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	3.04181	3.096125	3.15044	4.32676e-4	1.75203e-4	0.00583708	0.00306313
chr2	189459335	189459424	2271925	0	+	0.337079	(0.33,0.36]	chr2	206219	1	CDS	CDS:UTR3:EXON_MRNA	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	1.97842	3.096015	4.21361	0.0469469	1.64389e-5	0.171977	4.56784e-4
chr10	28620872	28620969	10990644	0	+	0.329897	(0.29,0.33]	chr10	835918	14	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000354911.9:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.45373	3.09567	3.73761	0.0156405	2.33029e-4	0.084273700000000007	0.00355688
chr1	11982037	11982114	45536	0	+	0.415584	(0.39,0.42]	chr1	5821	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000675194.1:ENST00000676369.1:ENST00000412236.2:ENST00000675530.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674706.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000490079.5:ENST00000484391.5:ENST00000497302.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.99507	3.095475	3.19588	0.00637824	0.00321212	0.0449937	0.0280721
chr6	159798199	159798276	7527036	0	+	0.402597	(0.39,0.42]	chr6	574573	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPL18	ENSG00000112110.10	ENST00000476826.5:ENST00000367034.5:ENST00000480842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.99507	3.095475	3.19588	0.00637824	0.00321212	0.0449937	0.0280721
chr19	46774971	46775061	17595454	0	-	0.544444	(0.53,0.59]	chr19	1481382	2	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	40	412	2	2.64516	3.095415	3.54567	2.38542e-6	8.25797e-10	9.17417e-5	8.84303e-8
chr10	47706802	47706899	11032137	0	+	0.42268	(0.42,0.455]	chr10	840057	1	INTRON	INTRON	SHLD2P3	ENSG00000189014.7	ENST00000323387.5	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	23	2	2.91373	3.0954	3.27707	0.00892357	0.00207325	0.0567495	0.0194849
chr12	62755226	62755317	12916251	0	+	0.428571	(0.42,0.455]	chr12	1006751	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP44	ENSG00000213352.3	ENST00000513513.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	23	2	2.91373	3.0954	3.27707	0.00892357	0.00207325	0.0567495	0.0194849
chr19	18280018	18280044	17499039	0	-	0.423077	(0.42,0.455]	chr19	1468045	1	CDS	CDS:UTR3:EXON_MRNA	JUND	ENSG00000130522.6	ENST00000252818.5:ENST00000600972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.91373	3.0954	3.27707	0.00892357	0.00207325	0.0567495	0.0194849
chr7	120989525	120989621	8493734	0	+	0.427083	(0.42,0.455]	chr7	648291	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.91373	3.0954	3.27707	0.00892357	0.00207325	0.0567495	0.0194849
chr8	30709313	30709413	9782074	0	-	0.43	(0.42,0.455]	chr8	739753	1	SS5_PROX	SS5_PROX:INTRON	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5:ENST00000523295.5:ENST00000521479.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.91373	3.0954	3.27707	0.00892357	0.00207325	0.0567495	0.0194849
chr16	68122837	68122931	15714221	0	+	0.457447	(0.455,0.49]	chr16	1250981	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	65	2	3.0141	3.09521	3.17632	9.3076e-4	7.57063e-6	0.0111917	2.18774e-4
chr1	21874469	21874533	891203	0	-	0.671875	(0.59,1]	chr1	92504	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000427897.1:ENST00000498495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	4	72	2	2.11642	3.095155	4.07389	0.0144884	7.9402e-5	0.0790431	0.00150391
chr5	150444285	150444353	6914262	0	-	0.661765	(0.59,1]	chr5	529148	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	637	2	2.82008	3.0951500000000003	3.37022	7.24764e-6	7.98143e-8	2.31544e-4	4.61176e-6
chr1	161448289	161448389	1333679	0	-	0.67	(0.59,1]	chr1	136938	74	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	476	8469	2	2.71884	3.09509	3.47134	8.42928e-7	4.0417e-9	3.45046e-5	3.86009e-7
chr17	32358502	32358571	16200521	0	+	0.362319	(0.36,0.39]	chr17	1308149	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-227G15.3:ZNF207	ENSG00000265794.5:ENSG00000010244.19	ENST00000581915.5:ENST00000578389.1:ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1:ENST00000578918.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	36	2	3.02397	3.09509	3.16621	0.00674398	8.32577e-5	0.0461258	0.00157156
chr1	203699545	203699631	669453	0	+	0.5	(0.49,0.53]	chr1	67406	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.90685	3.095085	4.28332	0.0534351	0.00338762	0.184995	0.0288632
chr16	69165340	69165405	15721847	0	+	0.492308	(0.49,0.53]	chr16	1251871	1	CDS	CDS:EXON_MRNA:INTRON	UTP4	ENSG00000141076.18	ENST00000562237.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000567500.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.90685	3.095085	4.28332	0.0534351	0.00338762	0.184995	0.0288632
chr16	69332790	69332882	15994015	0	-	0.521739	(0.49,0.53]	chr16	1284077	1	CDS	CDS:EXON_MRNA:INTRON	COG8:RP11-343C2.12	ENSG00000213380.16:ENSG00000272617.3	ENST00000562595.5:ENST00000306875.10:ENST00000562949.1:ENST00000562081.2	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.90685	3.095085	4.28332	0.0534351	0.00338762	0.184995	0.0288632
chrX	92113432	92113525	19142675	0	-	0.494624	(0.49,0.53]	chrX	1627984	3	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	18	2	1.90685	3.095085	4.28332	0.0534351	0.00338762	0.184995	0.0288632
chr7	103434993	103435092	8962825	0	-	0.40404	(0.39,0.42]	chr7	686020	1	EXON_SMALL	EXON_SMALL:INTRON	SLC26A5:Y_RNA	ENSG00000170615.15:ENSG00000252047.1	ENST00000339444.10:ENST00000356767.8:ENST00000393735.6:ENST00000306312.8:ENST00000393730.5:ENST00000445809.5:ENST00000454864.5:ENST00000432958.6:ENST00000354356.8:ENST00000423416.5:ENST00000393729.5:ENST00000456463.5:ENST00000487407.1:ENST00000516238.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay	13	106	2	3.05757	3.0949999999999998	3.13243	5.74553e-5	6.58367e-7	0.00127357	2.80477e-5
chr1	58631332	58631431	1055019	0	-	0.494949	(0.49,0.53]	chr1	108133	6	EXON_PSEUDO	EXON_PSEUDO	RP4-592A1.2	ENSG00000185839.3	ENST00000427762.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	43	2	2.6129	3.094795	3.57669	0.0052746	3.59064e-5	0.0389109	8.71318e-4
chr12	6537100	6537158	12713612	0	+	0.603448	(0.59,1]	chr12	986658	1	CDS	CDS:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000492719.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	215	2	2.95161	3.09477	3.23793	5.04289e-5	7.26479e-6	0.00113788	2.13023e-4
chrX	20132181	20132263	18985474	0	-	0.414634	(0.39,0.42]	chrX	1616661	1	CDS	CDS:EXON_MRNA	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.67296	3.09466	3.51636	0.00159022	6.99837e-4	0.0168452	0.00846751
chrX	151403685	151403740	18909775	0	+	0.290909	(0.29,0.33]	chrX	1610131	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VMA21	ENSG00000160131.14	ENST00000477649.1:ENST00000370361.5:ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	3.08169	3.09465	3.10761	0.00114594	6.03128e-4	0.0130468	0.00754033
chr12	48692435	48692534	13321371	0	-	0.515152	(0.49,0.53]	chr12	1044934	41	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.86149	3.0945899999999997	4.32769	0.00938303	6.54988e-6	0.0590266	1.94116e-4
chr6	27814640	27814740	7649611	0	-	0.65	(0.59,1]	chr6	582807	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC14	ENSG00000276368.2	ENST00000333151.5	protein_coding	protein_coding	protein_coding	protein_coding	13	274	2	2.16522	3.094495	4.02377	0.001972	4.23212e-8	0.0187941	2.95285e-6
chr15	27092299	27092399	14833449	0	+	0.36	(0.33,0.36]	chr15	1164206	651	INTRON	INTRON	GABRG3	ENSG00000182256.13	ENST00000615808.5:ENST00000555083.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.82006	3.09442	4.36878	0.0323353	0.0021194	0.135977	0.0198008
chr11	10779196	10779288	11799524	0	+	0.326087	(0.29,0.33]	chr11	903615	2	UTR3	UTR3:EXON_MRNA:INTRON	CTR9	ENSG00000198730.9	ENST00000361367.7:ENST00000532365.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.63813	3.09431	3.55049	0.00803229	6.15323e-4	0.0528968	0.00765848
chr6	57188874	57188973	7756004	0	-	0.30303	(0.29,0.33]	chr6	595636	20	UTR3	UTR3:EXON_MRNA	RAB23	ENSG00000112210.12	ENST00000468148.6:ENST00000317483.4	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.63813	3.09431	3.55049	0.00803229	6.15323e-4	0.0528968	0.00765848
chr1	36304616	36304709	141731	0	+	0.526882	(0.49,0.53]	chr1	17609	2	UTR3	UTR3:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	9	83	2	2.83928	3.093965	3.34865	8.11312e-5	6.25986e-6	0.0016835	1.87037e-4
chr2	26234216	26234286	2566088	0	-	0.5	(0.49,0.53]	chr2	230621	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2:ENST00000461025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	109	2	2.63275	3.093715	3.55468	2.97496e-4	1.39926e-7	0.00470429	7.46217e-6
chr16	1699388	1699486	15488674	0	+	0.44898	(0.42,0.455]	chr16	1226188	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.34191	3.093645	3.84538	0.0159091	1.2691e-4	0.0854674	0.00219756
chr3	141952512	141952612	4483259	0	-	0.55	(0.53,0.59]	chr3	372565	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.36244	3.093255	3.82407	0.0179666	0.0131162	0.0918323	0.073569
chr5	172952388	172952486	6387688	0	+	0.561224	(0.53,0.59]	chr5	496127	17	UTR3	UTR3:EXON_MRNA	ERGIC1	ENSG00000113719.16	ENST00000393784.8:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.36244	3.093255	3.82407	0.0179666	0.0131162	0.0918323	0.073569
chr17	57791378	57791478	16609768	0	-	0.32	(0.29,0.33]	chr17	1364242	188	INTRON	INTRON	RP11-60A24.3	ENSG00000265542.5	ENST00000580960.1:ENST00000581805.5	lncRNA	lncRNA	lncRNA	lncRNA	7	65	2	2.45373	3.0931800000000003	3.73263	0.0156405	7.06068e-8	0.084273700000000007	4.14425e-6
chr12	120694911	120695000	13117452	0	+	0.483146	(0.455,0.49]	chr12	1023995	2	CDS	CDS:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2:ENST00000545525.5:ENST00000535656.1	protein_coding	protein_coding	protein_coding	protein_coding	6	61	2	2.45014	3.0927100000000003	3.73528	0.00397453	1.49591e-6	0.0322851	5.62205e-5
chr10	46010615	46010714	11470976	0	-	0.474747	(0.455,0.49]	chr10	874843	5	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.69053	3.09271	3.49489	0.0182983	2.03098e-6	0.0925808	7.24882e-5
chrX	103675780	103675875	19155323	0	-	0.357895	(0.33,0.36]	chrX	1629338	4	UTR3	UTR3:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	15	100	2	2.55374	3.09267	3.6316	9.428e-5	5.95974e-8	0.00187996	3.58552e-6
chr21	44806904	44806972	18277279	0	-	0.661765	(0.59,1]	chr21	1550220	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.17889	3.092565	4.00624	0.025085	1.12192e-4	0.116848	0.00199438
chr16	70252720	70252820	15996868	0	-	0.63	(0.59,1]	chr16	1284591	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	115	2	2.15176	3.0921950000000002	4.03263	0.00158582	1.11254e-4	0.0158483	0.00213212
chr2	110650704	110650784	2838048	0	-	0.475	(0.455,0.49]	chr2	253312	3	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5:ENST00000490632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	2.98577	3.09212	3.19847	2.99908e-5	1.88969e-5	6.77365e-4	5.12059e-4
chr3	128806452	128806533	3729195	0	+	0.493827	(0.49,0.53]	chr3	318643	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000675497.1:ENST00000674589.1:ENST00000464496.5:ENST00000485280.1:ENST00000483906.5:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	2.66439	3.0921000000000003	3.51981	0.00134122	6.88328e-4	0.0139818	0.00876781
chr12	120697635	120697733	13117482	0	+	0.408163	(0.39,0.42]	chr12	1024005	12	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.85416	3.09198	3.3298	0.00225069	0.00165391	0.021386	0.0163614
chr17	30272560	30272628	16496005	0	-	0.470588	(0.455,0.49]	chr17	1349333	1	CDS	CDS:UTR3:EXON_MRNA	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5:ENST00000577623.5:ENST00000581037.5:ENST00000577306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	1.98188	3.091885	4.20189	0.0226804	0.00397662	0.105116	0.0322851
chr2	20322798	20322896	2541389	0	-	0.295918	(0.29,0.33]	chr2	228596	38	INTRON	INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5:ENST00000424110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	46	2	2.48886	3.0917649999999997	3.69467	0.0055888	2.08145e-6	0.0419759	7.38737e-5
chr1	114396159	114396259	1236963	0	-	0.34	(0.33,0.36]	chr1	120945	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000492227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.86073	3.091715	3.3227	0.0105608	0.00222616	0.0644466	0.0211992
chr10	74121834	74121932	11575812	0	-	0.357143	(0.33,0.36]	chr10	881667	17	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.86073	3.091715	3.3227	0.0105608	0.00222616	0.0644466	0.0211992
chr6	117686756	117686856	7353675	0	+	0.34	(0.33,0.36]	chr6	565132	103	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.86073	3.091715	3.3227	0.0105608	0.00222616	0.0644466	0.0211992
chr9	7477927	7478025	10545929	0	-	0.55102	(0.53,0.59]	chr9	799719	10	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	98	2	2.59035	3.09165	3.59295	1.20217e-4	4.77401e-6	0.00209719	1.64158e-4
chrX	55220345	55220429	18705496	0	+	0.47619	(0.455,0.49]	chrX	1596374	1	UTR5	UTR5:EXON_MRNA	PAGE5	ENSG00000158639.13	ENST00000374955.8:ENST00000289619.9:ENST00000374952.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.52734	3.0913950000000003	3.65545	0.00792433	3.50134e-4	0.0523592	0.0049086
chr6	136260810	136260909	7982305	0	-	0.262626	[0,0.29]	chr6	610291	43	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000533422.5:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000529522.5:ENST00000532384.5:ENST00000530429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.91289	3.09125	3.26961	0.00229774	9.07288e-4	0.0210664	0.0110102
chr11	119302541	119302639	12163774	0	+	0.438776	(0.42,0.455]	chr11	938080	29	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.03532	3.0911850000000003	4.14705	0.040947	2.1071e-5	0.163285	5.06044e-4
chr9	121181395	121181495	10835889	0	-	0.59	(0.53,0.59]	chr9	820920	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.37399	3.091025	3.80806	0.0126178	1.65022e-4	0.0717599	0.00269147
chr6	31669318	31669351	7116081	0	+	0.545455	(0.53,0.59]	chr6	545970	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2:ENST00000409691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	3.05775	3.0905750000000003	3.1234	0.00390623	6.94592e-4	0.0322851	0.00846751
chr3	197951215	197951315	3992955	0	+	0.38	(0.36,0.39]	chr3	336603	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	69	507	2	2.92186	3.090565	3.25927	5.75162e-8	4.15054e-10	3.83208e-6	4.8156e-8
chr10	42567303	42567393	11017832	0	+	0.466667	(0.455,0.49]	chr10	838095	8	EXON_PSEUDO	EXON_PSEUDO	EIF3LP2	ENSG00000233837.1	ENST00000457262.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	24	2	2.69053	3.09043	3.49033	0.0182983	7.92678e-4	0.0925808	0.00933379
chr2	206127884	206127972	3132999	0	-	0.477273	(0.455,0.49]	chr2	276964	2	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5:ENST00000498520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.69053	3.09043	3.49033	0.0182983	7.92678e-4	0.0925808	0.00933379
chr6	160073756	160073829	7528635	0	+	0.465753	(0.455,0.49]	chr6	574895	1	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000487607.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.69053	3.09043	3.49033	0.0182983	7.92678e-4	0.0925808	0.00933379
chr8	85328559	85328659	9920301	0	-	0.49	(0.455,0.49]	chr8	749255	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5:ENST00000524324.5:ENST00000517618.5:ENST00000519991.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.69053	3.09043	3.49033	0.0182983	7.92678e-4	0.0925808	0.00933379
chr18	31547235	31547333	16809172	0	+	0.336735	(0.33,0.36]	chr18	1386482	6	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	3.03552	3.09036	3.1452	0.0012034	9.8054e-5	0.0134762	0.00177549
chr14	35312862	35312960	14225591	0	+	0.387755	(0.36,0.39]	chr14	1113848	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554961.5:ENST00000554620.5:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1:ENST00000556221.1:ENST00000554457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	61	2	2.63702	3.090285	3.54355	0.00212882	1.35556e-6	0.0206577	5.16469e-5
chr1	65413025	65413124	251457	0	+	0.414141	(0.39,0.42]	chr1	28747	1	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.98448	3.09018	3.19588	0.00321212	2.45186e-4	0.0280721	0.00370692
chr10	50306849	50306946	11486520	0	-	0.391753	(0.39,0.42]	chr10	876691	14	UTR3	UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	3.04948	3.08981	3.13014	1.91318e-5	5.00017e-6	4.6791e-4	1.7067e-4
chr1	19197202	19197265	876951	0	-	0.396825	(0.39,0.42]	chr1	90386	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	2.76711	3.0897550000000003	3.4124	3.61954e-4	9.95835e-5	0.00544764	0.00180006
chr7	135674165	135674262	8553484	0	+	0.474227	(0.455,0.49]	chr7	652937	1	UTR3	UTR3:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	150	2	3.05891	3.0897550000000003	3.1206	3.83395e-6	3.00287e-7	1.35845e-4	1.43376e-5
chr10	45004931	45005029	11023940	0	+	0.387755	(0.36,0.39]	chr10	838844	10	UTR3	UTR3:EXON_MRNA	ZNF22	ENSG00000165512.5	ENST00000298299.4	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.63702	3.08963	3.54224	0.00212882	4.51643e-5	0.0206577	9.43703e-4
chr5	115614108	115614208	6776987	0	-	0.35	(0.33,0.36]	chr5	519913	10	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	48	2	2.57153	3.08963	3.60773	0.00330025	3.96665e-6	0.028478	1.2815e-4
chr8	22139415	22139472	9750692	0	-	0.666667	(0.59,1]	chr8	737172	1	CDS	CDS:EXON_MRNA	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2:ENST00000518664.5:ENST00000519074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.9891200000000002	3.08956	3.19	0.00823979	0.0039188	0.0540283	0.0314356
chr5	127517639	127517707	6204673	0	+	0.573529	(0.53,0.59]	chr5	483406	1	UTR5	UTR5:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512871.1:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	1.87133	3.089545	4.30776	0.0308819	0.00407289	0.130016	0.0324137
chr2	38749515	38749562	2605199	0	-	0.382979	(0.36,0.39]	chr2	234693	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	68	2	2.4359	3.089525	3.74315	4.27078e-4	1.37919e-6	0.00618578	5.23299e-5
chr4	169697643	169697734	5217963	0	+	0.373626	(0.36,0.39]	chr4	420911	6	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.37674	3.089495	3.80225	0.00529284	1.85308e-4	0.0390084	0.00322093
chr2	241353133	241353232	2467904	0	+	0.323232	(0.29,0.33]	chr2	223257	13	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	3.02964	3.08948	3.14932	1.84463e-4	6.35336e-5	0.00321185	0.00124813
chr11	47822086	47822164	12389803	0	-	0.410256	(0.39,0.42]	chr11	957535	1	CDS	CDS:UTR3:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000527126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.49701	3.0892749999999998	3.68154	0.0339607	3.05414e-4	0.141431	0.00442973
chr9	120816539	120816637	10833854	0	-	0.397959	(0.39,0.42]	chr9	820467	6	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.49701	3.0892749999999998	3.68154	0.0339607	3.05414e-4	0.141431	0.00442973
chr1	37493469	37493569	946788	0	-	0.35	(0.33,0.36]	chr1	99426	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	2.35083	3.089185	3.82754	0.00132967	7.00235e-7	0.0144372	2.94691e-5
chr15	83056388	83056466	15417135	0	-	0.423077	(0.42,0.455]	chr15	1219226	1	CDS	CDS:EXON_MRNA	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.32646	3.0889800000000003	3.8515	0.0119089	0.00624136	0.0686664	0.0443844
chr2	74417081	74417181	2742635	0	-	0.44	(0.42,0.455]	chr2	244328	3	SS5_PROX	SS5_PROX:INTRON	RP11-523H20.5:C2orf81	ENSG00000159239.13:ENSG00000284308.2	ENST00000517883.2:ENST00000612891.4:ENST00000684111.1:ENST00000290390.9:ENST00000640331.1:ENST00000640371.1:ENST00000638555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.32629	3.088895	3.8515	0.0153564	0.0119089	0.0832114	0.0686664
chr3	13322265	13322339	4046249	0	-	0.648649	(0.59,1]	chr3	339534	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.03921	3.0888600000000004	4.13851	0.0371471	5.66622e-5	0.151849	0.00114182
chr1	231366410	231366475	1548264	0	-	0.430769	(0.42,0.455]	chr1	155130	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1:ENST00000476717.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr11	33286613	33286713	11901161	0	+	0.43	(0.42,0.455]	chr11	909230	2	CDS	CDS:EXON_MRNA	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000531504.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr15	67232445	67232543	14987766	0	+	0.428571	(0.42,0.455]	chr15	1178197	1	EXON_PSEUDO	EXON_PSEUDO	RPS24P16	ENSG00000242634.1	ENST00000497294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr16	56834369	56834442	15680467	0	+	0.452055	(0.42,0.455]	chr16	1246665	1	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr16	67621516	67621591	15711274	0	+	0.453333	(0.42,0.455]	chr16	1250392	2	CDS	CDS:EXON_MRNA	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1:ENST00000645699.1:ENST00000642943.1:ENST00000645409.1:ENST00000646566.1:ENST00000644950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr17	76776473	76776541	16359780	0	+	0.441176	(0.42,0.455]	chr17	1328704	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MFSD11	ENSG00000092931.11	ENST00000586622.5:ENST00000588460.5:ENST00000621483.4:ENST00000355954.7:ENST00000593181.5:ENST00000336509.8:ENST00000590514.5:ENST00000585692.5:ENST00000585865.1:ENST00000590070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr5	110949993	110950092	6760098	0	-	0.424242	(0.42,0.455]	chr5	519064	21	EXON_PSEUDO	EXON_PSEUDO	BCLAF1P1	ENSG00000248966.1	ENST00000505813.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr6	89644104	89644193	7837870	0	-	0.426966	(0.42,0.455]	chr6	600379	1	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000487831.2:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.3259	3.0887000000000002	3.8515	0.0484606	0.0119089	0.175495	0.0686664
chr7	116507151	116507250	8475400	0	+	0.373737	(0.36,0.39]	chr7	647296	11	UTR3	UTR3:EXON_MRNA	CAV2	ENSG00000105971.15	ENST00000222693.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.02118	3.088505	4.15583	0.0251625	1.9188e-5	0.117055	4.68725e-4
chr7	128074501	128074595	8519190	0	+	0.62766	(0.59,1]	chr7	649782	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	94	2	3.0544	3.088255	3.12211	7.51607e-4	2.52807e-4	0.00938882	0.00381058
chr10	32900673	32900773	11443880	0	-	0.25	[0,0.29]	chr10	872611	5	UTR3	UTR3:EXON_MRNA:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	2.0001	3.0882500000000004	4.1764	0.0227161	1.69626e-5	0.107633	4.28575e-4
chr1	149811942	149812042	1286910	0	-	0.67	(0.59,1]	chr1	127818	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC18	ENSG00000203814.6	ENST00000545683.1:ENST00000469483.1:ENST00000620458.1:ENST00000369167.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	1.99004	3.087865	4.18569	0.0214639	5.09234e-5	0.102904	0.00114531
chr6	41937314	41937394	7701887	0	-	0.55	(0.53,0.59]	chr6	590683	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5:ENST00000511686.5:ENST00000512426.5:ENST00000513956.5:ENST00000506555.5:ENST00000508143.5:ENST00000505064.1:ENST00000510058.1:ENST00000505672.5:ENST00000511161.5:ENST00000505884.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	54	2	2.03947	3.08758	4.13569	0.00610305	2.50241e-5	0.0439421	5.82427e-4
chrX	153693107	153693175	18915612	0	+	0.573529	(0.53,0.59]	chrX	1611182	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	115	2	3.05264	3.0874949999999997	3.12235	1.96889e-5	5.39156e-6	5.29277e-4	1.64762e-4
chr7	66948543	66948618	8307637	0	+	0.6	(0.59,1]	chr7	633379	1	CDS	CDS:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.61074	3.0873299999999997	3.56392	0.025486	8.86707e-4	0.117089	0.0101815
chr7	128769363	128769462	8521850	0	+	0.292929	(0.29,0.33]	chr7	650198	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	19	106	2	2.69498	3.087115	3.47925	5.53481e-6	4.42604e-7	1.68484e-4	2.22177e-5
chr1	35442966	35443028	937034	0	-	0.516129	(0.49,0.53]	chr1	98549	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000373266.8:ENST00000426982.6:ENST00000461312.5:ENST00000485551.5:ENST00000473423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	2.05119	3.08691	4.12263	0.0360743	0.00591451	0.145024	0.0427941
chr1	40771198	40771290	155587	0	+	0.543478	(0.53,0.59]	chr1	19530	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NFYC	ENSG00000066136.20	ENST00000447388.7:ENST00000456393.6:ENST00000372652.5:ENST00000308733.9:ENST00000414185.1:ENST00000496608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr11	609228	609326	11758030	0	+	0.55102	(0.53,0.59]	chr11	898205	23	CDS	CDS:EXON_MRNA	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr15	90644373	90644470	15101993	0	+	0.536082	(0.53,0.59]	chr15	1188336	24	UTR3	UTR3:EXON_MRNA	CRTC3	ENSG00000140577.16	ENST00000268184.11:ENST00000420329.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr16	67229470	67229552	15987613	0	-	0.536585	(0.53,0.59]	chr16	1282818	2	UTR3	UTR3:EXON_MRNA	FHOD1	ENSG00000135723.14	ENST00000569085.1:ENST00000258201.9:ENST00000567752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr3	49057141	49057235	4172015	0	-	0.56383	(0.53,0.59]	chr3	350280	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000357496.6:ENST00000424300.5:ENST00000479449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr4	2672204	2672288	4685474	0	+	0.571429	(0.53,0.59]	chr4	388556	2	CDS	CDS:EXON_MRNA	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5:ENST00000513350.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr4	10087706	10087784	5311727	0	-	0.551282	(0.53,0.59]	chr4	427671	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000515743.5:ENST00000502962.5:ENST00000504739.5:ENST00000506246.5:ENST00000505543.5:ENST00000508949.5:ENST00000510848.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr9	124521223	124521321	10850472	0	-	0.571429	(0.53,0.59]	chr9	821976	41	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chrX	48904963	48905049	19063521	0	-	0.534884	(0.53,0.59]	chrX	1620558	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.35511	3.08675	3.81839	0.0445399	0.0184435	0.172163	0.0945306
chr17	19445969	19446067	16472795	0	-	0.561224	(0.53,0.59]	chr17	1345836	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC004448.5:RPS2P46	ENSG00000235979.9:ENSG00000189343.7	ENST00000658570.1:ENST00000627753.1:ENST00000668984.1:ENST00000629630.1:ENST00000655270.1:ENST00000456537.6:ENST00000458332.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	26	253	2	2.92024	3.086695	3.25315	4.4079e-7	2.97012e-7	1.99026e-5	1.59562e-5
chr11	57390566	57390650	12394256	0	-	0.535714	(0.53,0.59]	chr11	958620	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1:ENST00000529411.1:ENST00000528835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.77921	3.086685	3.39416	0.0132865	0.00126006	0.0740932	0.013837
chr10	56358555	56358639	11514058	0	-	0.583333	(0.53,0.59]	chr10	877460	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6:ENST00000460654.5:ENST00000361148.6:ENST00000478181.5:ENST00000467523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.7898	3.0866350000000002	3.38347	0.0128364	0.00132446	0.0719798	0.0138834
chr2	219213007	219213065	3191183	0	-	0.586207	(0.53,0.59]	chr2	280803	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000492543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.7898	3.0866350000000002	3.38347	0.0128364	0.00132446	0.0719798	0.0138834
chr5	151799233	151799313	6299708	0	+	0.475	(0.455,0.49]	chr5	491932	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000679207.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	92	2	2.81137	3.0866350000000002	3.3619	4.71337e-5	1.77018e-6	9.78524e-4	7.16003e-5
chr7	873331	873425	8093910	0	+	0.393617	(0.39,0.42]	chr7	618494	1	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.34349	3.0866100000000003	3.82973	0.0169272	1.3728e-4	0.0890655	0.00232973
chr9	73167496	73167555	10304764	0	+	0.457627	(0.455,0.49]	chr9	776058	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000495713.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	3.0141	3.0861099999999997	3.15812	9.3076e-4	8.56318e-5	0.0111917	0.00160672
chr1	117076640	117076731	425762	0	+	0.527473	(0.49,0.53]	chr1	42063	1	CDS	CDS:EXON_MRNA	TTF2	ENSG00000116830.12	ENST00000369466.9	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.72252	3.0860149999999997	3.44951	0.0405223	0.0161474	0.153343	0.0860154
chr19	47000416	47000502	17359571	0	+	0.511628	(0.49,0.53]	chr19	1440816	2	CDS	CDS:EXON_MRNA	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1:ENST00000599284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.72252	3.0860149999999997	3.44951	0.0405223	0.0161474	0.153343	0.0860154
chr22	38861520	38861620	18512440	0	-	0.53	(0.49,0.53]	chr22	1580454	2	UTR3	UTR3:EXON_MRNA	CBX6	ENSG00000183741.12	ENST00000407418.8	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.72252	3.0860149999999997	3.44951	0.0405223	0.0161474	0.153343	0.0860154
chr9	129822668	129822757	10867755	0	-	0.52809	(0.49,0.53]	chr9	824283	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1A	ENSG00000136827.12	ENST00000351698.5:ENST00000651202.1:ENST00000473604.2:ENST00000473084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.72252	3.0860149999999997	3.44951	0.0405223	0.0161474	0.153343	0.0860154
chrX	40063607	40063693	19045023	0	-	0.5	(0.49,0.53]	chrX	1618731	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.72252	3.0860149999999997	3.44951	0.0405223	0.0161474	0.153343	0.0860154
chr11	64317057	64317147	12417463	0	-	0.566667	(0.53,0.59]	chr11	962528	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRMT112	ENSG00000173113.7	ENST00000544844.6:ENST00000535750.5:ENST00000535126.1:ENST00000537918.1:ENST00000308774.6:ENST00000539854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	134	2	2.2732	3.08595	3.8987	0.00369236	8.10071e-9	0.030936	6.47615e-7
chr19	15611749	15611842	17245481	0	+	0.569892	(0.53,0.59]	chr19	1422501	2	EXON_PSEUDO	EXON_PSEUDO	RPL23AP2	ENSG00000225067.4	ENST00000471227.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	25	252	2	3.01828	3.085905	3.15353	9.19415e-7	1.12664e-7	4.12548e-5	6.19978e-6
chr11	27889635	27889735	12317015	0	-	0.37	(0.36,0.39]	chr11	952778	9	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	46	2	2.16717	3.0858550000000005	4.00454	0.0152504	1.78485e-6	0.0828908	6.50204e-5
chr2	152663034	152663103	2944116	0	-	0.405797	(0.39,0.42]	chr2	261564	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.02663	3.0857	4.14477	0.0130764	2.09513e-5	0.0729985	5.04211e-4
chr12	47780181	47780281	12860207	0	+	0.55	(0.53,0.59]	chr12	998324	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC48A1	ENSG00000211584.14	ENST00000547002.5:ENST00000442892.2:ENST00000551301.1:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.56002	3.085675	3.61133	0.00634904	4.55298e-4	0.0446708	0.00608573
chr18	31092100	31092200	17058608	0	-	0.34	(0.33,0.36]	chr18	1401862	1	CDS	CDS:UTR5:EXON_MRNA	DSC2	ENSG00000134755.18	ENST00000251081.8:ENST00000280904.11:ENST00000648081.1:ENST00000682357.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.84841	3.0855550000000003	3.3227	0.00222616	0.0020676	0.0211992	0.0194849
chr1	173830675	173830761	550034	0	+	0.476744	(0.455,0.49]	chr1	58422	1	CDS	CDS:UTR3:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000648055.1:ENST00000650297.1:ENST00000648458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.15064	3.0855200000000003	4.0204	0.00736097	0.00661084	0.0490627	0.046082
chr8	123209988	123210079	9588631	0	+	0.472527	(0.455,0.49]	chr8	727203	6	UTR3	UTR3:EXON_MRNA	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.15064	3.0855200000000003	4.0204	0.00736097	0.00661084	0.0490627	0.046082
chr9	118083210	118083296	10827666	0	-	0.534884	(0.53,0.59]	chr9	820068	5	EXON_PSEUDO	EXON_PSEUDO	TPT1P9	ENSG00000234782.3	ENST00000413759.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	50	2	2.56002	3.08552	3.61102	0.00634904	3.01487e-5	0.0446708	6.78876e-4
chr12	108645606	108645706	13530479	0	-	0.44	(0.42,0.455]	chr12	1063929	6	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.99666	3.085495	3.17433	0.00104775	3.82052e-4	0.0123035	0.0052929
chr7	151075338	151075423	8617530	0	+	0.623529	(0.59,1]	chr7	658383	2	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.92097	3.0853450000000002	3.24972	0.0102634	0.00314037	0.0628742	0.0264943
chr1	149861131	149861210	1287086	0	-	0.544304	(0.53,0.59]	chr1	127850	1	UTR5	UTR5:EXON_MRNA	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	1.86855	3.08525	4.30195	0.0189167	0.00421989	0.0934721	0.0328662
chr15	74416574	74416644	15374497	0	-	0.571429	(0.53,0.59]	chr15	1215177	1	CDS	CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	1.39828	3.08525	4.77222	0.0486819	6.67251e-4	0.175495	0.00867533
chr1	43976114	43976173	169364	0	+	0.59322	(0.59,1]	chr1	21842	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP6V0B	ENSG00000117410.14	ENST00000472505.6:ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472277.5:ENST00000472174.7:ENST00000461670.5:ENST00000468183.5:ENST00000473485.5:ENST00000496131.1:ENST00000498208.1:ENST00000532072.1:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.93698	3.08523	3.23348	0.00352837	0.0015925	0.0298518	0.0159023
chr19	52219690	52219777	17382227	0	+	0.574713	(0.53,0.59]	chr19	1445774	1	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000322088.11:ENST00000462990.5:ENST00000473820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.86102	3.085225	3.30943	0.0018255	0.0017805	0.0183913	0.0172974
chr6	157944103	157944200	7516760	0	+	0.639175	(0.59,1]	chr6	573600	14	UTR3	UTR3:EXON_MRNA	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	80	2	2.20362	3.085085	3.96655	0.00565413	1.54087e-4	0.0412424	0.00279744
chr8	96295153	96295204	9498875	0	+	0.470588	(0.455,0.49]	chr8	722455	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000518776.1:ENST00000522072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	2.92099	3.0850600000000004	3.24913	0.00239443	0.00138399	0.0225356	0.0143168
chr7	44830944	44831038	8800330	0	-	0.468085	(0.455,0.49]	chr7	671366	4	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	3.05529	3.0850049999999998	3.11472	4.88038e-5	3.40155e-5	0.00100497	8.31666e-4
chr3	48468837	48468909	4167347	0	-	0.444444	(0.42,0.455]	chr3	348995	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6:ENST00000460758.1:ENST00000497863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.70611	3.0848	3.46349	0.00397496	9.0025e-4	0.0322851	0.0102618
chr3	53235113	53235174	4189095	0	-	0.606557	(0.59,1]	chr3	353809	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000466765.1:ENST00000487660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.32384	3.084705	3.84557	0.0410704	0.0157639	0.163285	0.0851539
chr12	53516637	53516737	13339515	0	-	0.56	(0.53,0.59]	chr12	1049176	47	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000551087.1:ENST00000546661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr12	106971880	106971978	13071256	0	+	0.244898	[0,0.29]	chr12	1018636	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000280756.9:ENST00000551813.1:ENST00000548806.1:ENST00000551237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	1.80685	3.08434	4.36183	0.0438772	0.00170062	0.163572	0.01759
chr14	58244842	58244920	14311192	0	+	0.589744	(0.53,0.59]	chr14	1118472	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000554812.5:ENST00000553665.5:ENST00000557087.5:ENST00000555931.5:ENST00000554456.1:ENST00000412908.6:ENST00000555743.1:ENST00000557508.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr14	73276941	73277029	14698751	0	-	0.579545	(0.53,0.59]	chr14	1150980	4	CDS	CDS:EXON_MRNA	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000556772.5:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr17	1858364	1858446	16402473	0	-	0.536585	(0.53,0.59]	chr17	1335108	5	EXON_PSEUDO	EXON_PSEUDO	AC016292.3	ENSG00000108958.4	ENST00000451056.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr17	42128321	42128383	16545971	0	-	0.564516	(0.53,0.59]	chr17	1356963	2	CDS	CDS:EXON_MRNA	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000551338.1:ENST00000552162.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr17	42564708	42564803	16229156	0	+	0.547368	(0.53,0.59]	chr17	1313101	1	CDS	CDS:EXON_MRNA	COASY	ENSG00000068120.15	ENST00000421097.6:ENST00000393818.3:ENST00000591779.5:ENST00000590958.5:ENST00000591753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr19	6380280	6380380	17442012	0	-	0.54	(0.53,0.59]	chr19	1456698	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GTF2F1	ENSG00000125651.14	ENST00000394456.10:ENST00000593678.5:ENST00000594213.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr5	179799009	179799092	7002368	0	-	0.578313	(0.53,0.59]	chr5	536326	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MGAT4B	ENSG00000161013.17	ENST00000337755.9:ENST00000518778.5:ENST00000292591.12:ENST00000519836.5:ENST00000520969.5:ENST00000522293.5:ENST00000518980.5:ENST00000523382.5:ENST00000520875.5:ENST00000518867.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr7	135165965	135166057	9082241	0	-	0.586957	(0.53,0.59]	chr7	693269	3	UTR3	UTR3:EXON_MRNA:INTRON	CYREN	ENSG00000122783.17	ENST00000459937.5:ENST00000617987.1:ENST00000620897.4:ENST00000393114.8:ENST00000424142.5:ENST00000430372.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chrX	77895310	77895410	19129655	0	-	0.58	(0.53,0.59]	chrX	1626914	1	CDS_START	CDS_START:CDS:EXON_MRNA	MAGT1	ENSG00000102158.21	ENST00000618282.5:ENST00000358075.11:ENST00000476168.1:ENST00000373336.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chrX	153798232	153798328	18916212	0	+	0.572917	(0.53,0.59]	chrX	1611458	2	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471880.5:ENST00000486204.5:ENST00000485612.5:ENST00000447375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.34461	3.08434	3.82407	0.0457008	0.0179666	0.168044	0.0918323
chr11	34453089	34453141	11906147	0	+	0.403846	(0.39,0.42]	chr11	909787	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.27012	3.0843	3.89848	0.00945558	9.30194e-5	0.0594007	0.00169783
chr17	65013957	65014057	16642820	0	-	0.41	(0.39,0.42]	chr17	1368930	48	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.74243	3.0842650000000003	3.4261	0.00369167	0.00107164	0.030936	0.0118238
chr2	101266743	101266811	1957399	0	+	0.411765	(0.39,0.42]	chr2	185959	2	CDS	CDS:EXON_MRNA	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000462489.1:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.74243	3.0842650000000003	3.4261	0.00369167	0.00107164	0.030936	0.0118238
chr8	144790354	144790412	10150930	0	-	0.517241	(0.49,0.53]	chr8	764118	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL8	ENSG00000161016.18	ENST00000534781.1:ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	130	2	1.76807	3.08424	4.40041	0.00183699	4.74658e-9	0.0177449	4.42746e-7
chr17	78117555	78117644	16693086	0	-	0.719101	(0.59,1]	chr17	1375207	2	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	193	2	2.63214	3.0842	3.53626	0.005622	5.41543e-7	0.0421873	2.37415e-5
chr4	3518870	3518930	5285710	0	-	0.516667	(0.49,0.53]	chr4	425818	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.56183	3.08418	3.60653	0.0261296	4.50981e-4	0.118976	0.00605268
chr17	65013560	65013659	16642816	0	-	0.414141	(0.39,0.42]	chr17	1368930	44	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.71912	3.084175	3.44923	0.0163125	0.00105208	0.0866586	0.0123035
chr4	145110967	145111064	5146024	0	+	0.391753	(0.39,0.42]	chr4	416340	1	CDS	CDS:EXON_MRNA:INTRON	ABCE1	ENSG00000164163.11	ENST00000502586.5:ENST00000296577.9:ENST00000507193.5:ENST00000502803.5:ENST00000506506.5:ENST00000504292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.71912	3.084175	3.44923	0.0163125	0.00105208	0.0866586	0.0123035
chr6	43522428	43522524	7708059	0	-	0.395833	(0.39,0.42]	chr6	591455	2	UTR3	UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.71912	3.084175	3.44923	0.0163125	0.00105208	0.0866586	0.0123035
chr1	44757907	44757971	173965	0	+	0.546875	(0.53,0.59]	chr1	22363	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	57	2	2.51602	3.08411	3.6522	0.00264912	2.31822e-5	0.024013	5.49766e-4
chr12	131755385	131755479	13158315	0	+	0.457447	(0.455,0.49]	chr12	1028296	1	CDS	CDS:UTR3:EXON_MRNA	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000535236.5:ENST00000541286.5:ENST00000537164.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.35515	3.0839499999999997	3.81275	0.0140117	0.0138827	0.0767536	0.0760883
chr12	123597314	123597411	13127194	0	+	0.391753	(0.39,0.42]	chr12	1025792	7	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000543425.1:ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	183	2	2.85478	3.083825	3.31287	2.0113e-6	3.28265e-8	7.95505e-5	2.15416e-6
chr22	24106624	24106723	18310989	0	+	0.50505	(0.49,0.53]	chr22	1555832	34	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	55	2	2.59093	3.08381	3.57669	7.86196e-4	3.59064e-5	0.00929193	8.71318e-4
chr17	50382209	50382306	16585115	0	-	0.412371	(0.39,0.42]	chr17	1363112	11	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	16	133	2	2.74048	3.0837	3.42692	4.87052e-5	4.62415e-8	0.00110855	2.87675e-6
chr1	174003391	174003491	1373952	0	-	0.49	(0.455,0.49]	chr1	140096	99	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.69053	3.08362	3.47671	0.0368644	0.0182983	0.145024	0.0925808
chr1	206649264	206649364	682560	0	+	0.47	(0.455,0.49]	chr1	68980	4	UTR3	UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000489878.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.69053	3.08362	3.47671	0.0368644	0.0182983	0.145024	0.0925808
chr10	14844185	14844282	10935790	0	+	0.463918	(0.455,0.49]	chr10	832626	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-398C13.8:HSPA14	ENSG00000284024.4:ENSG00000187522.16	ENST00000645667.1:ENST00000378372.8:ENST00000640019.3:ENST00000441647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.69053	3.08362	3.47671	0.0368644	0.0182983	0.145024	0.0925808
chr17	42779069	42779157	16229786	0	+	0.534091	(0.53,0.59]	chr17	1313397	1	UTR3	UTR3:EXON_MRNA	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.54844	3.0835	3.61856	0.0303021	0.00663226	0.129773	0.0461575
chr20	56369772	56369868	18019683	0	-	0.552083	(0.53,0.59]	chr20	1527153	5	UTR3	UTR3:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.54844	3.0835	3.61856	0.0303021	0.00663226	0.129773	0.0461575
chr2	27071558	27071654	2569036	0	-	0.729167	(0.59,1]	chr2	231084	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OST4	ENSG00000228474.6	ENST00000456793.2:ENST00000447619.5:ENST00000429985.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.30623	3.0834149999999996	3.8606	0.0170607	2.2997e-4	0.0896731	0.00352524
chr1	111147973	111148053	405841	0	+	0.3875	(0.36,0.39]	chr1	39871	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000480324.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	42	2	2.42114	3.08319	3.74524	0.00564641	1.17259e-5	0.0422191	3.12994e-4
chr13	39012888	39012987	13976227	0	-	0.50505	(0.49,0.53]	chr13	1096566	3	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	2.8681	3.0831749999999998	3.29825	0.00175299	0.00019429700000000001	0.0171299	0.00332542
chr1	11947975	11948067	45210	0	+	0.521739	(0.49,0.53]	chr1	5715	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	2.95291	3.08304	3.21317	0.00119735	3.08783e-4	0.0134293	0.00445935
chr4	128270226	128270325	5639347	0	-	0.525253	(0.49,0.53]	chr4	449280	11	UTR3	UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	2.95291	3.08304	3.21317	0.00119735	3.08783e-4	0.0134293	0.00445935
chr17	19446165	19446263	16472797	0	-	0.622449	(0.59,1]	chr17	1345836	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC004448.5:RPS2P46	ENSG00000235979.9:ENSG00000189343.7	ENST00000658570.1:ENST00000627753.1:ENST00000668984.1:ENST00000629630.1:ENST00000655270.1:ENST00000456537.6:ENST00000458332.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	80	2	2.3791	3.08293	3.78676	0.00271535	3.60514e-4	0.0237499	0.00544284
chr16	24187639	24187738	15598959	0	+	0.40404	(0.39,0.42]	chr16	1236902	17	INTRON	INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1:ENST00000466124.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	3.0503	3.0828949999999997	3.11549	0.00570576	0.00403491	0.0424438	0.032143
chr1	222629903	222630000	723964	0	+	0.484536	(0.455,0.49]	chr1	72962	25	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chr17	78109676	78109775	16693002	0	-	0.484848	(0.455,0.49]	chr17	1375192	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000589217.1:ENST00000592939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chr19	48966482	48966506	17368096	0	+	0.458333	(0.455,0.49]	chr19	1442248	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chr20	45075868	45075967	17800807	0	+	0.484848	(0.455,0.49]	chr20	1504894	8	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chr5	6602460	6602500	6434404	0	-	0.475	(0.455,0.49]	chr5	501476	1	CDS	CDS:UTR3:EXON_MRNA	NSUN2	ENSG00000037474.15	ENST00000264670.11:ENST00000504374.5:ENST00000505892.5:ENST00000513888.5:ENST00000506139.5:ENST00000514127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chr9	34252225	34252324	10238879	0	+	0.484848	(0.455,0.49]	chr9	769896	8	UTR3	UTR3:EXON_MRNA	UBAP1	ENSG00000165006.14	ENST00000379186.8:ENST00000297661.9:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chrX	40680043	40680133	19046753	0	-	0.488889	(0.455,0.49]	chrX	1618895	3	CDS	CDS:EXON_MRNA:INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000496531.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.35214	3.082445	3.81275	0.0455621	0.0138827	0.168044	0.0760883
chr20	31778898	31778984	17749756	0	+	0.406977	(0.39,0.42]	chr20	1498039	2	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	3.0503	3.082325	3.11435	0.00570576	1.19537e-5	0.0424438	3.18207e-4
chr2	15275483	15275566	2527208	0	-	0.457831	(0.455,0.49]	chr2	227327	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.50904	3.0822450000000003	3.65545	0.0310515	3.50134e-4	0.131262	0.0049086
chr19	40765007	40765067	17330947	0	+	0.633333	(0.59,1]	chr19	1436164	1	CDS	CDS:EXON_MRNA	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000243563.8:ENST00000601393.1:ENST00000596860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.42324	3.08204	3.74084	0.0116918	4.03818e-4	0.0686664	0.00550292
chr8	100948723	100948789	9976510	0	-	0.393939	(0.39,0.42]	chr8	752762	2	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5:ENST00000418997.1:ENST00000437293.5:ENST00000523131.1:ENST00000523938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	57	2	2.38824	3.0820350000000003	3.77583	6.81913e-4	1.05659e-5	0.00834704	3.15727e-4
chr1	44844001	44844082	972093	0	-	0.506173	(0.49,0.53]	chr1	102634	2	EXON_PSEUDO	EXON_PSEUDO	RP5-882O7.1	ENSG00000226499.1	ENST00000447970.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	25	2	2.72252	3.08201	3.4415	0.0161474	9.98297e-4	0.0860154	0.0111246
chr1	40071905	40071998	151979	0	+	0.365591	(0.36,0.39]	chr1	19043	5	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	3.06064	3.0820049999999997	3.10337	4.833e-5	1.7786e-5	0.00110097	4.43546e-4
chr7	30617113	30617195	8203730	0	+	0.414634	(0.39,0.42]	chr7	625831	1	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	104	2	3.04166	3.082	3.12234	1.28898e-4	8.94209e-7	0.0024153	3.6386e-5
chr5	142144574	142144674	6262672	0	+	0.37	(0.36,0.39]	chr5	488718	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000503388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.32678	3.0818649999999996	3.83695	0.0193538	6.15027e-6	0.0943643	1.8415e-4
chr12	24814414	24814514	13255700	0	-	0.35	(0.33,0.36]	chr12	1038842	45	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	8	52	2	2.49939	3.0816749999999997	3.66396	6.86704e-4	3.89211e-6	0.00839272	1.37673e-4
chr17	47674637	47674709	16251897	0	+	0.444444	(0.42,0.455]	chr17	1316730	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000579901.5:ENST00000578718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	29	2	2.63665	3.08162	3.52659	0.0048172	6.87022e-4	0.0365653	0.00876781
chr11	62532480	62532579	12408757	0	-	0.555556	(0.53,0.59]	chr11	960901	158	CDS	CDS:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.35511	3.0815849999999996	3.80806	0.0445399	1.65022e-4	0.172163	0.00269147
chr11	62835694	62835767	12411486	0	-	0.520548	(0.49,0.53]	chr11	961790	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WDR74	ENSG00000133316.16	ENST00000278856.9:ENST00000311713.11:ENST00000525239.5:ENST00000529106.5:ENST00000525752.5:ENST00000542347.5:ENST00000541930.5:ENST00000540620.5:ENST00000538150.1:ENST00000545112.5:ENST00000453708.6:ENST00000544953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	2.26641	3.081555	3.8967	0.0190546	0.0128791	0.093872	0.0725185
chr1	206587076	206587175	682391	0	+	0.585859	(0.53,0.59]	chr1	68949	2	UTR3	UTR3:EXON_MRNA	RASSF5	ENSG00000266094.8	ENST00000579436.7:ENST00000580449.5:ENST00000581503.6:ENST00000636182.1:ENST00000577571.5:ENST00000581888.1:ENST00000579942.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	16	2	2.7898	3.08155	3.3733	0.0529193	0.0128364	0.18423900000000001	0.0719798
chr21	9822114	9822214	18158650	0	-	0.59	(0.53,0.59]	chr21	1541889	54	INTRON	INTRON	LINC01667	ENSG00000280081.4	ENST00000651050.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	16	2	2.7898	3.08155	3.3733	0.0529193	0.0128364	0.18423900000000001	0.0719798
chr21	43075390	43075484	18271527	0	-	0.56383	(0.53,0.59]	chr21	1549517	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000441030.5:ENST00000470912.5:ENST00000465732.5:ENST00000478709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	16	2	2.7898	3.08155	3.3733	0.0529193	0.0128364	0.18423900000000001	0.0719798
chr18	35333305	35333403	17076649	0	-	0.316327	(0.29,0.33]	chr18	1402842	12	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.50855	3.08154	3.65453	0.0023535	2.84967e-6	0.0222204	9.64791e-5
chr20	57359130	57359222	18021343	0	-	0.369565	(0.36,0.39]	chr20	1527345	2	UTR5	UTR5:EXON_MRNA	MTRNR2L3	ENSG00000256222.3	ENST00000543500.3	protein_coding	protein_coding	protein_coding	protein_coding	29	209	2	2.68616	3.0815200000000003	3.47688	3.93417e-6	2.72374e-9	1.38878e-4	2.53067e-7
chr16	28835057	28835122	15620382	0	+	0.661538	(0.59,1]	chr16	1238470	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1:ENST00000562686.1:ENST00000569318.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	10	151	2	2.52254	3.08131	3.64008	2.2628e-4	5.73108e-5	0.00347776	0.00127091
chr22	21628170	21628252	18441858	0	-	0.634146	(0.59,1]	chr22	1572447	2	UTR3	UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	70	2	2.33806	3.08131	3.82456	0.00632881	3.02854e-4	0.0448545	0.00472028
chr4	68410	68500	4673645	0	+	0.344444	(0.33,0.36]	chr4	387020	7	UTR3	UTR3:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	1.81756	3.0812	4.34484	0.0223533	5.33265e-6	0.106046	1.63127e-4
chr1	40236979	40237078	152761	0	+	0.363636	(0.36,0.39]	chr1	19091	13	CDS	CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr1	236590900	236590954	1568625	0	-	0.388889	(0.36,0.39]	chr1	157118	2	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr1	241597745	241597843	1577685	0	-	0.377551	(0.36,0.39]	chr1	157580	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	OPN3	ENSG00000054277.14	ENST00000462265.5:ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000635737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr10	45458139	45458238	11467194	0	-	0.383838	(0.36,0.39]	chr10	874475	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7:ENST00000395769.6:ENST00000476962.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr10	119840842	119840901	11719212	0	-	0.38983	(0.36,0.39]	chr10	894174	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCMBP	ENSG00000197771.13	ENST00000360003.7:ENST00000369077.4:ENST00000466047.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr16	53247292	53247362	15666830	0	+	0.371429	(0.36,0.39]	chr16	1245165	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5:ENST00000565803.2:ENST00000219084.10:ENST00000569225.5:ENST00000565119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr21	14534450	14534550	18164298	0	-	0.37	(0.36,0.39]	chr21	1542480	107	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr4	7030781	7030878	4706771	0	+	0.381443	(0.36,0.39]	chr4	390749	5	UTR3	UTR3:EXON_MRNA	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr5	160407970	160408068	6947561	0	-	0.367347	(0.36,0.39]	chr5	532023	1	CDS	CDS:EXON_MRNA	SLU7	ENSG00000164609.10	ENST00000297151.9:ENST00000520841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr6	157866746	157866846	7515958	0	+	0.38	(0.36,0.39]	chr6	573491	367	INTRON	INTRON	SNX9	ENSG00000130340.17	ENST00000614703.4:ENST00000614800.4:ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr7	874462	874556	8093922	0	+	0.37234	(0.36,0.39]	chr7	618494	13	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr7	10452766	10452863	8129145	0	+	0.360825	(0.36,0.39]	chr7	621313	16	EXON_PSEUDO	EXON_PSEUDO	HSPA8P8	ENSG00000229091.3	ENST00000419827.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr7	128302650	128302750	9058535	0	-	0.38	(0.36,0.39]	chr7	691245	51	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr9	124520729	124520828	10850467	0	-	0.363636	(0.36,0.39]	chr9	821976	36	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chrX	120258200	120258299	18844041	0	+	0.383838	(0.36,0.39]	chrX	1605768	29	UTR3	UTR3:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.63115	3.081045	3.53094	0.0305588	0.0245975	0.130016	0.114841
chr3	150544220	150544317	4517219	0	-	0.350515	(0.33,0.36]	chr3	374942	24	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1	protein_coding	protein_coding	protein_coding	protein_coding	19	132	2	2.8397	3.080895	3.32209	1.78476e-5	3.92422e-8	4.89288e-4	2.50377e-6
chr19	38844007	38844104	17561150	0	-	0.494845	(0.49,0.53]	chr19	1475088	1	CDS	CDS:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	75	2	3.04181	3.08074	3.11967	1.75203e-4	1.16146e-5	0.00306313	3.1065e-4
chr2	132254687	132254786	2878619	0	-	0.545455	(0.53,0.59]	chr2	257829	15	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	244	2532	2	2.56831	3.0807	3.59309	2.62449e-7	7.66809e-12	1.43092e-5	1.37263e-9
chr5	132294813	132294911	6222489	0	+	0.744898	(0.59,1]	chr5	484229	2	CDS	CDS:EXON_MRNA	SLC22A4	ENSG00000197208.6	ENST00000200652.4	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.69477	3.080685	3.4666	0.020208	0.00133574	0.0978331	0.0139317
chr11	74203727	74203821	12016462	0	+	0.457447	(0.455,0.49]	chr11	926455	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	1.95898	3.0804349999999996	4.20189	0.047107	0.00397662	0.172269	0.0322851
chr2	31823439	31823533	2588547	0	-	0.468085	(0.455,0.49]	chr2	233050	10	EXON_PSEUDO	EXON_PSEUDO	AK2P2	ENSG00000242272.1	ENST00000439142.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	1.95898	3.0804349999999996	4.20189	0.047107	0.00397662	0.172269	0.0322851
chr19	10316306	10316402	17459292	0	-	0.677083	(0.59,1]	chr19	1460720	2	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	149	2	2.69604	3.080395	3.46475	6.7422e-4	8.17121e-6	0.00873562	2.33422e-4
chr22	37225461	37225557	18503490	0	-	0.4375	(0.42,0.455]	chr22	1578938	3	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	2.84905	3.08033	3.31161	0.00186138	7.5591e-5	0.018635	0.00143985
chr3	47916232	47916326	4164421	0	-	0.468085	(0.455,0.49]	chr3	348579	4	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	2.15985	3.0802699999999996	4.00069	0.0128965	5.13615e-5	0.0722356	0.00104999
chr1	8861179	8861269	852363	0	-	0.588889	(0.53,0.59]	chr1	85899	3	UTR3	UTR3:EXON_MRNA	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	222	2	2.9911	3.080205	3.16931	1.68296e-6	1.80961e-7	6.835e-5	9.34624e-6
chr15	67521348	67521430	14990280	0	+	0.695122	(0.59,1]	chr15	1178355	1	CDS	CDS:EXON_MRNA	C15orf61	ENSG00000189227.6	ENST00000342683.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.04362	3.08017	4.11672	0.036186	0.0222273	0.145024	0.105595
chr4	24570750	24570847	5359144	0	-	0.536082	(0.53,0.59]	chr4	429878	2	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.60161	3.080105	4.5586	0.0451605	0.00161229	0.167576	0.0169168
chr17	1673426	1673496	16401518	0	-	0.528571	(0.49,0.53]	chr17	1334902	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	3.04107	3.0799950000000003	3.11892	0.00533879	0.00398244	0.0392268	0.0322851
chr1	37979464	37979533	950198	0	-	0.565217	(0.53,0.59]	chr1	100100	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5:ENST00000488934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.69635	3.07992	3.46349	0.00112127	9.2216e-4	0.0128408	0.0104432
chr22	41829389	41829488	18383163	0	+	0.414141	(0.39,0.42]	chr22	1564977	37	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.01081	3.079835	4.14886	0.0207537	0.00415881	0.100574	0.0325842
chr19	34227888	34227988	17299081	0	+	0.33	(0.29,0.33]	chr19	1429709	6	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	48	2	2.69364	3.079485	3.46533	2.27069e-4	2.24958e-5	0.0034888	5.90075e-4
chr13	99540713	99540793	13865425	0	+	0.4375	(0.42,0.455]	chr13	1087182	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000466555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.96788	3.07933	3.19078	0.00310864	0.00109784	0.0274272	0.0119666
chr8	4788102	4788198	9177805	0	+	0.4375	(0.42,0.455]	chr8	700904	9	EXON_PSEUDO	EXON_PSEUDO	PAICSP4	ENSG00000254244.1	ENST00000517543.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	30	2	2.96788	3.07933	3.19078	0.00310864	0.00109784	0.0274272	0.0119666
chr1	40238663	40238762	152778	0	+	0.373737	(0.36,0.39]	chr1	19091	30	CDS	CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr12	31748169	31748240	13283307	0	-	0.380282	(0.36,0.39]	chr12	1041528	2	EXON_PSEUDO	EXON_PSEUDO	RP11-467L13.4	ENSG00000256843.1	ENST00000540596.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr15	34979410	34979508	15207816	0	-	0.387755	(0.36,0.39]	chr15	1197458	12	UTR3	UTR3:EXON_MRNA	ZNF770	ENSG00000198146.4	ENST00000356321.4	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr16	22334167	22334260	15590086	0	+	0.365591	(0.36,0.39]	chr16	1236024	6	UTR3	UTR3:EXON_MRNA	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000565117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr16	58113677	58113764	15965436	0	-	0.37931	(0.36,0.39]	chr16	1280905	2	UTR3	UTR3:EXON_MRNA	CFAP20	ENSG00000070761.8	ENST00000262498.8:ENST00000562622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr3	123932121	123932217	4420449	0	-	0.364583	(0.36,0.39]	chr3	366917	2	INTRON	INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000479903.5:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr4	26420550	26420637	4766560	0	+	0.37931	(0.36,0.39]	chr4	394242	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBPJ	ENSG00000168214.21	ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1:ENST00000515023.6:ENST00000506903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr7	36443808	36443862	8230870	0	+	0.37037	(0.36,0.39]	chr7	627561	2	CDS	CDS:EXON_MRNA	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000428612.5:ENST00000457743.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.38564	3.0793299999999997	3.77302	0.0476159	0.0162599	0.17993	0.0866586
chr16	24567232	24567323	15600851	0	+	0.571429	(0.53,0.59]	chr16	1237054	2	CDS	CDS:EXON_MRNA:INTRON	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000319715.10:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6:ENST00000562430.5:ENST00000570185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.16037	3.07928	3.99819	0.0254312	0.0111308	0.117089	0.0665375
chr16	89383801	89383901	16078162	0	-	0.57	(0.53,0.59]	chr16	1292222	103	INTRON	INTRON	ANKRD11:GS2-740I5.1	ENSG00000167522.16:ENSG00000288715.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000683497.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.16037	3.07928	3.99819	0.0254312	0.0111308	0.117089	0.0665375
chr11	123059628	123059706	12636985	0	-	0.551282	(0.53,0.59]	chr11	980716	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000533238.5:ENST00000526862.1:ENST00000527983.5:ENST00000528292.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	243	2	2.50889	3.07921	3.64953	2.24003e-5	5.11393e-9	5.88087e-4	4.33154e-7
chr1	149852754	149852824	464864	0	+	0.714286	(0.59,1]	chr1	46809	1	CDS	CDS:EXON_MRNA	H3C15	ENSG00000203852.3	ENST00000403683.1	protein_coding	protein_coding	protein_coding	protein_coding	11	262	2	1.83241	3.078945	4.32548	0.0111021	1.04781e-8	0.0665375	8.90399e-7
chr4	77048218	77048318	5479172	0	-	0.47	(0.455,0.49]	chr4	439255	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	11	89	2	2.86788	3.0789150000000003	3.28995	3.81851e-5	9.67333e-6	9.15499e-4	2.68677e-4
chr1	21859834	21859918	891039	0	-	0.642857	(0.59,1]	chr1	92428	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	6	89	2	1.92731	3.0788100000000003	4.23031	0.0110094	3.46639e-5	0.0652007	7.61275e-4
chr1	100085327	100085427	1198231	0	-	0.49	(0.455,0.49]	chr1	116943	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SASS6	ENSG00000156876.10	ENST00000462159.1:ENST00000287482.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.69344	3.078665	3.46389	0.0176068	9.14164e-4	0.0925619	0.0110519
chr19	40605034	40605130	17330251	0	+	0.604167	(0.59,1]	chr19	1435946	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000600026.5:ENST00000204005.13:ENST00000599016.5:ENST00000308370.11:ENST00000594537.2:ENST00000598717.5:ENST00000593738.1:ENST00000396819.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	101	2	1.49472	3.07866	4.6626	0.0371034	2.85e-6	0.151849	9.64791e-5
chr16	88876686	88876782	16075719	0	-	0.53125	(0.53,0.59]	chr16	1291936	20	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1:ENST00000563920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	2.71181	3.07845	3.44509	3.99651e-4	8.31409e-5	0.0054764	0.00171126
chr1	228457424	228457524	1539742	0	-	0.66	(0.59,1]	chr1	154184	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2AW	ENSG00000181218.5	ENST00000366695.3	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.92318	3.0783300000000002	3.23348	0.00352837	1.92669e-4	0.0298518	0.00306375
chr12	56137217	56137295	12898347	0	+	0.525641	(0.49,0.53]	chr12	1004268	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	3.05512	3.07811	3.1011	5.69237e-4	1.59562e-4	0.00778538	0.00263091
chr19	17404128	17404171	17495798	0	-	0.581395	(0.53,0.59]	chr19	1467252	1	CDS	CDS:UTR3:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2:ENST00000533098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	67	2	2.80515	3.07809	3.35103	6.42453e-4	2.54119e-5	0.00850441	5.894e-4
chr3	196050169	196050267	4663142	0	-	0.306122	(0.29,0.33]	chr3	385550	10	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	40	224	2	3.0047	3.078015	3.15133	6.35359e-8	1.64795e-8	4.18906e-6	1.19257e-6
chr11	65211826	65211916	11982948	0	+	0.488889	(0.455,0.49]	chr11	920059	7	UTR3	UTR3:EXON_MRNA	CAPN1	ENSG00000014216.16	ENST00000533820.5:ENST00000533129.5:ENST00000524773.5:ENST00000279247.11:ENST00000527323.5:ENST00000528165.5:ENST00000530567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	67	2	2.73862	3.07794	3.41726	1.62714e-4	1.55075e-5	0.00290162	3.95473e-4
chr11	106098198	106098297	12122403	0	+	0.313131	(0.29,0.33]	chr11	933147	14	UTR3	UTR3:EXON_MRNA	AASDHPPT	ENSG00000149313.11	ENST00000278618.9:ENST00000534152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	28	2	2.50855	3.07782	3.64709	0.0023535	3.76873e-4	0.0222204	0.00523508
chr12	7158849	7158945	12717481	0	+	0.479167	(0.455,0.49]	chr12	987745	9	UTR3	UTR3:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.85172	3.0777799999999997	3.30384	0.010864	0.00184955	0.0643837	0.0178046
chr7	155303824	155303895	8632610	0	+	0.408451	(0.39,0.42]	chr7	659282	1	CDS	CDS:EXON_MRNA:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	2.70583	3.0775300000000003	3.44923	0.00105208	9.63515e-5	0.0123035	0.00175267
chr12	56597544	56597642	13351657	0	-	0.602041	(0.59,1]	chr12	1051592	21	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	12	214	2	2.83215	3.0774299999999997	3.32271	1.00141e-4	4.17764e-6	0.00196575	1.33434e-4
chr14	23126977	23127076	14529513	0	-	0.474747	(0.455,0.49]	chr14	1138639	18	UTR3	UTR3:EXON_MRNA	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	2.9967	3.07741	3.15812	0.00650423	8.56318e-5	0.0454205	0.00160672
chr1	121116963	121117061	1259536	0	-	0.602041	(0.59,1]	chr1	123389	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	H2BP1	ENSG00000223345.3	ENST00000430394.1:ENST00000412169.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	107	2	2.44372	3.07728	3.71084	0.00204199	3.89573e-5	0.0192784	9.32836e-4
chr5	179730642	179730741	6414480	0	+	0.363636	(0.36,0.39]	chr5	499211	21	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	308	2	2.84635	3.07714	3.30793	3.52483e-7	1.60804e-9	1.84475e-5	1.6029e-7
chr22	41522908	41522987	18381023	0	+	0.594937	(0.59,1]	chr22	1564602	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.97802	3.07709	3.17616	0.00434232	0.00133365	0.0339139	0.0139317
chr3	100736575	100736645	3637670	0	+	0.6	(0.59,1]	chr3	311853	1	CDS	CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.97802	3.07709	3.17616	0.00434232	0.00133365	0.0339139	0.0139317
chr6	31779997	31780075	7662404	0	-	0.564103	(0.53,0.59]	chr6	585264	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000463184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	44	2	2.84458	3.0770049999999998	3.30943	0.0018255	5.21436e-4	0.0183913	0.00674101
chr1	160306353	160306423	1328855	0	-	0.528571	(0.49,0.53]	chr1	136045	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.26641	3.07686	3.88731	0.0190546	4.40111e-6	0.093872	1.3969e-4
chr3	196067517	196067587	4663334	0	-	0.485714	(0.455,0.49]	chr3	385609	1	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	44	345	2	2.97811	3.0768500000000003	3.17559	3.84343e-8	3.21547e-8	2.71947e-6	2.11824e-6
chr11	64321591	64321691	11980523	0	+	0.55	(0.53,0.59]	chr11	919254	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	9	99	2	2.4751	3.07676	3.67842	7.16255e-4	5.49252e-7	0.00901405	2.40221e-5
chr11	6484090	6484189	11781851	0	+	0.525253	(0.49,0.53]	chr11	901762	20	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2010I16.2:TIMM10B	ENSG00000283977.1:ENSG00000132286.12	ENST00000639224.1:ENST00000640959.1:ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.03065	3.0766400000000003	4.12263	0.0189484	0.00591451	0.0958835	0.0427941
chr1	212432943	212433043	702774	0	+	0.84	(0.59,1]	chr1	71313	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NENF	ENSG00000117691.10	ENST00000366988.5:ENST00000479589.5:ENST00000473900.1:ENST00000472389.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	2.66274	3.07647	3.4902	0.00482151	0.00130379	0.0365653	0.0142445
chrX	63349579	63349677	19088579	0	-	0.367347	(0.36,0.39]	chrX	1624065	25	UTR3	UTR3:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	27	2	2.32678	3.076455	3.82613	0.0193538	1.39565e-4	0.0943643	0.0023599
chr2	69329360	69329424	2718357	0	-	0.34375	(0.33,0.36]	chr2	242013	2	CDS	CDS:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.7655	3.0763949999999998	3.38729	0.0175892	1.20567e-4	0.0918323	0.00210079
chr2	151475860	151475958	2134943	0	+	0.346939	(0.33,0.36]	chr2	197868	9	UTR3	UTR3:EXON_MRNA:INTRON	RIF1	ENSG00000080345.18	ENST00000444746.7:ENST00000243326.9:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.7655	3.0763949999999998	3.38729	0.0175892	1.20567e-4	0.0918323	0.00210079
chr3	195787128	195787227	4661138	0	-	0.565657	(0.53,0.59]	chr3	385270	85	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.14885	3.07639	4.00393	0.0262993	0.0108084	0.117164	0.064368
chrX	40073519	40073617	19045127	0	-	0.581633	(0.53,0.59]	chrX	1618754	13	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.14885	3.07639	4.00393	0.0262993	0.0108084	0.117164	0.064368
chr5	177337135	177337192	6991097	0	-	0.736842	(0.59,1]	chr5	534731	1	CDS	CDS:EXON_MRNA:INTRON	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000515209.5:ENST00000514458.5:ENST00000502560.5:ENST00000502721.5:ENST00000513877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	127	2	2.58269	3.0762549999999997	3.56982	0.0067313	4.18574e-6	0.0461258	1.33669e-4
chr1	51782558	51782643	191633	0	+	0.470588	(0.455,0.49]	chr1	24553	1	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	2.09123	3.0760300000000003	4.06083	0.00905243	3.56832e-5	0.0574173	7.81595e-4
chr1	160291334	160291415	1328682	0	-	0.580247	(0.53,0.59]	chr1	135971	1	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	2.30988	3.07601	3.84214	0.00643853	6.5494e-6	0.0452349	1.94116e-4
chr11	61300135	61300219	12403883	0	-	0.535714	(0.53,0.59]	chr11	960173	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	59	2	2.30988	3.07601	3.84214	0.00643853	6.5494e-6	0.0452349	1.94116e-4
chr8	52623727	52623781	9828324	0	-	0.296296	(0.29,0.33]	chr8	743566	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RB1CC1	ENSG00000023287.13	ENST00000025008.10:ENST00000435644.6:ENST00000521611.1:ENST00000519912.1:ENST00000522957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	22	2	2.83531	3.07592	3.31653	0.00261621	0.00228447	0.0238929	0.0209856
chr6	26189076	26189112	7647183	0	-	0.388889	(0.36,0.39]	chr6	582538	1	UTR5	UTR5:EXON_MRNA	H4C4	ENSG00000277157.2	ENST00000614247.2	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.94286	3.0758650000000003	3.20887	0.00128446	8.51229e-5	0.0136229	0.00174655
chr5	139627281	139627377	6250573	0	+	0.364583	(0.36,0.39]	chr5	487112	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D2	ENSG00000131508.16	ENST00000398733.8:ENST00000398734.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.72655	3.0757899999999996	4.42503	0.033108	0.00133228	0.13754	0.0144372
chr11	10507979	10508065	12270795	0	-	0.55814	(0.53,0.59]	chr11	948733	2	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	43	452	2	2.42891	3.0754650000000003	3.72202	1.09786e-5	1.12106e-10	3.26658e-4	1.5006e-8
chr11	6613063	6613162	12249906	0	-	0.434343	(0.42,0.455]	chr11	946834	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.91373	3.0754	3.23707	0.00892357	2.71467e-4	0.0567495	0.00404536
chr11	46796875	46796940	12384051	0	-	0.446154	(0.42,0.455]	chr11	956160	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.91373	3.0754	3.23707	0.00892357	2.71467e-4	0.0567495	0.00404536
chr1	21896174	21896242	891458	0	-	0.514706	(0.49,0.53]	chr1	92615	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000412328.5:ENST00000439717.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	24	2	2.99849	3.0752800000000002	3.15207	0.00630123	0.00347189	0.0445415	0.0286293
chr19	58557062	58557157	17643546	0	-	0.494737	(0.49,0.53]	chr19	1491166	1	CDS	CDS:UTR5:EXON_MRNA	UBE2M	ENSG00000130725.8	ENST00000253023.8:ENST00000595957.5:ENST00000596985.1:ENST00000599829.1:ENST00000593801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.99849	3.0752800000000002	3.15207	0.00630123	0.00347189	0.0445415	0.0286293
chr8	101200001	101200059	9976865	0	-	0.448276	(0.42,0.455]	chr8	752818	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000518071.5:ENST00000311212.9:ENST00000519744.5:ENST00000520498.1:ENST00000517844.5:ENST00000519103.1:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.72686	3.07498	3.4231	0.00330337	0.00112541	0.027613	0.0128481
chr6	158785491	158785583	8044099	0	-	0.565217	(0.53,0.59]	chr6	614951	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4:ENST00000476189.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	2.47	3.074965	3.67993	0.0089333	3.22778e-4	0.0567495	0.0046122
chr1	12011495	12011565	45872	0	+	0.514286	(0.49,0.53]	chr1	5935	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1:ENST00000676295.1:ENST00000675043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.41364	3.07429	3.73494	0.0189345	0.0112538	0.0934721	0.0665375
chr13	27256435	27256525	13657881	0	+	0.5	(0.49,0.53]	chr13	1076415	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL21	ENSG00000122026.11	ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000483765.5:ENST00000485756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.41364	3.07429	3.73494	0.0189345	0.0112538	0.0934721	0.0665375
chr4	169689042	169689136	5217874	0	+	0.510638	(0.49,0.53]	chr4	420887	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.41364	3.07429	3.73494	0.0189345	0.0112538	0.0934721	0.0665375
chr1	108992651	108992743	396813	0	+	0.521739	(0.49,0.53]	chr1	38396	5	EXON_PSEUDO	EXON_PSEUDO	RP11-20O24.4	ENSG00000244716.3	ENST00000414070.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	57	2	3.05512	3.07424	3.09336	1.59562e-4	1.28432e-4	0.00263091	0.00241206
chr16	87402206	87402306	15801146	0	+	0.38	(0.36,0.39]	chr16	1257518	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000565788.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.72333	3.0741799999999997	4.42503	0.0514027	0.00133228	0.18321	0.0144372
chr17	17383648	17383739	16464545	0	-	0.626374	(0.59,1]	chr17	1344546	4	EXON_PSEUDO	EXON_PSEUDO	RPL13P12	ENSG00000215030.5	ENST00000392730.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	82	2	1.83139	3.07401	4.31663	0.0225	2.15624e-5	0.106723	5.14797e-4
chr5	133975945	133976021	6843305	0	-	0.5	(0.49,0.53]	chr5	523578	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000489906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.38097	3.074	3.76703	0.0425419	1.02216e-5	0.167547	2.82175e-4
chr16	24215508	24215607	15599242	0	+	0.444444	(0.42,0.455]	chr16	1236920	8	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	8	52	2	2.12023	3.073975	4.02772	0.00189178	4.30844e-5	0.0181965	0.00100091
chr12	54456017	54456085	13343992	0	-	0.426471	(0.42,0.455]	chr12	1049866	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000552336.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	172	2	2.62251	3.0739549999999998	3.5254	2.64726e-5	1.1348e-8	6.76878e-4	8.62742e-7
chr3	139378114	139378189	4479686	0	-	0.413333	(0.39,0.42]	chr3	372272	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	3.0503	3.07383	3.09736	0.00570576	5.79886e-4	0.0424438	0.00734771
chr1	53921650	53921750	1026742	0	-	0.36	(0.33,0.36]	chr1	106531	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HSPB11	ENSG00000081870.12	ENST00000371378.6:ENST00000194214.10:ENST00000489675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.54538	3.0736800000000004	3.60198	0.00259294	6.01238e-4	0.0229695	0.00811676
chr1	183626540	183626639	1404923	0	-	0.353535	(0.33,0.36]	chr1	142115	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.54538	3.0736800000000004	3.60198	0.00259294	6.01238e-4	0.0229695	0.00811676
chr1	196673909	196673962	640814	0	+	0.377358	(0.36,0.39]	chr1	64431	2	CDS	CDS:EXON_MRNA	CFH	ENSG00000000971.16	ENST00000367429.9:ENST00000630130.2:ENST00000359637.2	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.84089	3.0734	3.30591	0.0128123	1.89047e-4	0.0719798	0.003022
chr2	70088326	70088423	1878484	0	+	0.639175	(0.59,1]	chr2	177396	6	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	12	187	2	2.14203	3.07319	4.00435	0.00142099	8.81321e-7	0.0152922	3.58909e-5
chr1	150560059	150560096	468530	0	+	0.513514	(0.49,0.53]	chr1	47506	1	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	2.81492	3.072955	3.33099	6.31846e-4	1.59567e-4	0.00837621	0.00263091
chr12	104334236	104334332	13058992	0	+	0.322917	(0.29,0.33]	chr12	1017696	1	CDS	CDS:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1:ENST00000525265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.38576	3.0729249999999997	3.76009	0.0439193	3.08518e-4	0.163572	0.00476847
chr7	66991218	66991301	8837459	0	-	0.409639	(0.39,0.42]	chr7	675006	2	CDS	CDS:UTR3:EXON_MRNA	SBDS	ENSG00000126524.10	ENST00000246868.7:ENST00000414306.5:ENST00000617799.1:ENST00000490953.5:ENST00000463579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	2.18155	3.072825	3.9641	0.0283931	6.346e-5	0.127654	0.00124725
chr7	105112105	105112199	8449878	0	+	0.5	(0.49,0.53]	chr7	645366	4	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	97	2	2.94238	3.072705	3.20303	1.77694e-5	9.76669e-6	4.87271e-4	2.71119e-4
chr15	58597546	58597641	15310678	0	-	0.547368	(0.53,0.59]	chr15	1208276	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	60	2	2.72478	3.072645	3.42051	0.00324675	1.59847e-5	0.0282494	4.06411e-4
chr5	37310647	37310743	6540151	0	-	0.416667	(0.39,0.42]	chr5	506566	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.94917	3.0725249999999997	3.19588	0.00321212	0.00121791	0.0280721	0.0130188
chr1	51789235	51789335	1016275	0	-	0.42	(0.39,0.42]	chr1	105173	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000464385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	49	2	2.62131	3.0724299999999998	3.52355	0.00609677	7.29219e-6	0.0439136	2.13219e-4
chr3	13420126	13420226	4047269	0	-	0.74	(0.59,1]	chr3	339731	1	CDS_START	CDS_START:CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	1.48516	3.07242	4.65968	0.047789	0.00413632	0.18008	0.0324998
chr2	47160775	47160804	2631444	0	-	0.344828	(0.33,0.36]	chr2	236917	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	2.17058	3.07219	3.9738	0.01664	5.94302e-5	0.0878065	0.00119141
chr1	19222693	19222763	877170	0	-	0.642857	(0.59,1]	chr1	90437	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000486405.1:ENST00000486238.1:ENST00000494770.6:ENST00000462505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	77	2	2.97653	3.0719250000000002	3.16732	0.00142722	5.6576e-4	0.0153442	0.00718071
chr5	132866981	132867035	6226314	0	+	0.592593	(0.59,1]	chr5	484688	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UQCRQ	ENSG00000164405.11	ENST00000378667.1:ENST00000498309.1:ENST00000378670.8:ENST00000496429.1:ENST00000378665.1:ENST00000480372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	77	2	2.97653	3.0719250000000002	3.16732	0.00142722	5.6576e-4	0.0153442	0.00718071
chr14	100353777	100353869	14788703	0	-	0.543478	(0.53,0.59]	chr14	1158726	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	50	2	1.86855	3.071905	4.27526	0.0189167	1.03921e-5	0.0934721	2.85526e-4
chr1	112929208	112929308	1232474	0	-	0.56	(0.53,0.59]	chr1	120476	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000478835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	63	2	2.80766	3.071675	3.33569	2.30272e-4	1.57373e-4	0.00382267	0.00260854
chr12	21508457	21508557	12781386	0	+	0.36	(0.33,0.36]	chr12	992805	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	GOLT1B	ENSG00000111711.10	ENST00000535593.5:ENST00000229314.10:ENST00000542038.5:ENST00000540141.5:ENST00000545093.5:ENST00000539663.5:ENST00000539025.5:ENST00000542194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	47	2	2.79426	3.0715950000000003	3.34893	2.22813e-4	1.14296e-4	0.00370775	0.00202776
chr1	109229413	109229492	398022	0	+	0.455696	(0.455,0.49]	chr1	38566	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.96875	3.07141	4.17407	0.0480352	1.754e-5	0.180552	4.38078e-4
chr7	22817999	22818048	8722560	0	-	0.489796	(0.455,0.49]	chr7	665834	1	CDS	CDS:EXON_MRNA:INTRON	TOMM7	ENSG00000196683.11	ENST00000463284.2:ENST00000405021.7:ENST00000483581.1:ENST00000372879.8:ENST00000358435.9:ENST00000621567.1:ENST00000496129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	34	2	1.96875	3.07141	4.17407	0.0480352	1.754e-5	0.180552	4.38078e-4
chr16	30988954	30989050	15632640	0	+	0.489583	(0.455,0.49]	chr16	1240952	9	UTR3	UTR3:EXON_MRNA	HSD3B7	ENSG00000099377.14	ENST00000297679.10:ENST00000262520.10	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.74211	3.0711	3.40009	0.00330545	0.00120619	0.028478	0.0129255
chr19	47209605	47209699	17360887	0	+	0.468085	(0.455,0.49]	chr19	1440994	4	UTR3	UTR3:EXON_MRNA	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.74211	3.0711	3.40009	0.00330545	0.00120619	0.028478	0.0129255
chr6	143495706	143495806	8005239	0	-	0.46	(0.455,0.49]	chr6	611739	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FUCA2	ENSG00000001036.14	ENST00000002165.11	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.74211	3.0711	3.40009	0.00330545	0.00120619	0.028478	0.0129255
chr2	9003439	9003539	2507199	0	-	0.86	(0.59,1]	chr2	226159	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000486484.5:ENST00000477073.5:ENST00000462696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	22	2	2.42639	3.071025	3.71566	0.0487443	0.0409084	0.175495	0.163285
chr3	49012859	49012957	3459269	0	+	0.642857	(0.59,1]	chr3	301931	12	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000489684.2:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	22	2	2.42639	3.071025	3.71566	0.0487443	0.0409084	0.175495	0.163285
chr6	170656329	170656429	7556948	0	+	0.63	(0.59,1]	chr6	576995	159	INTRON	INTRON	XX-C2158C12.2	ENSG00000230423.3	ENST00000656791.1:ENST00000426839.2	lncRNA	lncRNA	lncRNA	lncRNA	1	22	2	2.42639	3.071025	3.71566	0.0487443	0.0409084	0.175495	0.163285
chr2	231454923	231455023	3226708	0	-	0.29	[0,0.29]	chr2	283836	15	UTR3	UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	49	2	1.99261	3.070985	4.14936	0.00562727	5.85374e-7	0.0422191	2.531e-5
chr10	73030266	73030318	11568465	0	-	0.403846	(0.39,0.42]	chr10	880463	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	153	2	2.41646	3.070865	3.72527	0.00123763	1.39689e-9	0.0136777	1.4122e-7
chr4	139289996	139290077	5669688	0	-	0.333333	(0.33,0.36]	chr4	450415	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFC1	ENSG00000109390.13	ENST00000503997.5:ENST00000394228.5:ENST00000539387.5:ENST00000539002.5:ENST00000544855.5:ENST00000394223.2:ENST00000505036.5:ENST00000394225.6:ENST00000503453.5:ENST00000676245.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	75	2	2.68221	3.07065	3.45909	1.8131e-4	7.91613e-7	0.00316116	3.27615e-5
chr2	177220389	177220488	2228547	0	+	0.292929	(0.29,0.33]	chr2	203394	12	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.48886	3.07056	3.65226	0.0055888	2.31878e-5	0.0419759	5.49766e-4
chr20	482760	482860	17871441	0	-	0.4	(0.39,0.42]	chr20	1511949	41	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	2.67296	3.0704399999999996	3.46792	0.00159022	7.10972e-5	0.0168452	0.00136974
chr2	28778962	28779039	1702680	0	+	0.376623	(0.36,0.39]	chr2	167005	3	CDS	CDS:EXON_MRNA	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000418910.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.89872	3.07033	4.24194	0.056542	0.00276729	0.19417	0.0247437
chr18	36167113	36167167	16825277	0	+	0.351852	(0.33,0.36]	chr18	1387653	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	26	2	1.4550399999999999	3.0703199999999997	4.6856	0.0361848	3.92435e-4	0.145024	0.00583618
chrX	81297887	81297981	18750150	0	+	0.361702	(0.36,0.39]	chrX	1600060	8	UTR3	UTR3:EXON_MRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	1.66836	3.070265	4.47217	0.0474647	2.19864e-6	0.17993	7.75596e-5
chr10	23137384	23137476	10964762	0	+	0.423913	(0.42,0.455]	chr10	834559	6	EXON_PSEUDO	EXON_PSEUDO	YWHAZP3	ENSG00000229932.3	ENST00000415292.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	57	2	2.69502	3.070195	3.44537	2.01357e-4	8.6897e-5	0.00317801	0.00177086
chr22	37225557	37225654	18503491	0	-	0.525773	(0.49,0.53]	chr22	1578938	4	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.8671	3.07019	3.27328	0.0100489	2.21441e-4	0.0623334	0.00341572
chrX	120437675	120437773	19196136	0	-	0.316327	(0.29,0.33]	chrX	1631971	13	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	1.83055	3.0700749999999997	4.3096	0.0348758	6.80571e-6	0.144642	2.01083e-4
chr11	497970	498055	12226403	0	-	0.682353	(0.59,1]	chr11	943342	1	CDS	CDS:UTR3:EXON_MRNA	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.55837	3.0698499999999997	3.58133	0.00709491	8.92036e-4	0.0479177	0.010856
chr3	25598144	25598225	4093014	0	-	0.296296	(0.29,0.33]	chr3	342037	3	UTR3	UTR3:EXON_MRNA	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	2.14478	3.069655	3.99453	0.00445138	8.03892e-5	0.0340751	0.00167226
chr1	247879151	247879250	816546	0	+	0.434343	(0.42,0.455]	chr1	80729	28	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.36247	3.069565	3.77666	0.0462889	1.85215e-4	0.176878	0.00296795
chr8	10666977	10667070	9197210	0	+	0.44086	(0.42,0.455]	chr8	702494	1	EXON_SMALL	EXON_SMALL:PRIMIRNA	MIR4286	ENSG00000263762.1	ENST00000580651.1	miRNA	miRNA	miRNA	miRNA:primary_miRNA	2	26	2	2.36247	3.069565	3.77666	0.0462889	1.85215e-4	0.176878	0.00296795
chr9	34086876	34086974	10634749	0	-	0.44898	(0.42,0.455]	chr9	803967	6	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.36247	3.069565	3.77666	0.0462889	1.85215e-4	0.176878	0.00296795
chr11	57741808	57741881	11952455	0	+	0.712329	(0.59,1]	chr11	914752	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMX2-CTNND1:SELENOH:RP11-691N7.6	ENSG00000288534.1:ENSG00000211450.10:ENSG00000254732.2	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000622257.4:ENST00000534355.6:ENST00000533321.1:ENST00000388857.8:ENST00000528798.1:ENST00000534386.2:ENST00000534647.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.42324	3.06945	3.71566	0.0487443	0.0116918	0.175495	0.0686664
chr16	56401732	56401787	15959390	0	-	0.563636	(0.53,0.59]	chr16	1279918	1	CDS	CDS:EXON_MRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000568762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.65894	3.069425	3.47991	0.0193255	6.7738e-5	0.0943643	0.0013157
chr7	150323020	150323116	8614613	0	+	0.5625	(0.53,0.59]	chr7	657670	5	UTR5	UTR5:EXON_MRNA	ZBED6CL	ENSG00000188707.6	ENST00000343855.6	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.65894	3.069425	3.47991	0.0193255	6.7738e-5	0.0943643	0.0013157
chr3	152841241	152841340	3818916	0	+	0.444444	(0.42,0.455]	chr3	325736	45	UTR3	UTR3:EXON_MRNA	P2RY1	ENSG00000169860.7	ENST00000305097.6	protein_coding	protein_coding	protein_coding	protein_coding	10	82	2	2.94325	3.06935	3.19545	1.00632e-4	2.7221e-6	0.00181216	1.02298e-4
chr6	32832626	32832725	7667177	0	-	0.545455	(0.53,0.59]	chr6	586798	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4:ENST00000485701.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	37	2	3.02054	3.069165	3.11779	0.00577011	5.11883e-4	0.0426551	0.00664583
chr6	113945415	113945470	7902979	0	-	0.327273	(0.29,0.33]	chr6	605405	2	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000520746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	29	2	2.80161	3.069095	3.33658	0.00415667	1.69227e-4	0.0325842	0.00275464
chr22	37851411	37851490	18364405	0	+	0.481013	(0.455,0.49]	chr22	1562154	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000414316.5:ENST00000477256.5:ENST00000406934.5:ENST00000451427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.40664	3.0690299999999997	3.73142	0.0123662	2.35261e-4	0.0705839	0.00356397
chr22	37888425	37888464	18364792	0	+	0.461538	(0.455,0.49]	chr22	1562213	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1:ENST00000460638.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	30	2	2.40664	3.0690299999999997	3.73142	0.0123662	2.35261e-4	0.0705839	0.00356397
chr13	46134188	46134250	14009684	0	-	0.403226	(0.39,0.42]	chr13	1098502	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.62131	3.068835	3.51636	0.00609677	6.99837e-4	0.0439136	0.00846751
chr2	171517537	171517626	3014284	0	-	0.719101	(0.59,1]	chr2	267007	4	EXON_PSEUDO	EXON_PSEUDO	RPS15P4	ENSG00000233762.3	ENST00000433675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	168	2	2.3010100000000002	3.0688050000000002	3.8366	5.0882e-4	1.64596e-5	0.00712658	4.16664e-4
chr10	96750549	96750636	11210219	0	+	0.609195	(0.59,1]	chr10	852817	4	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	180	2	2.76878	3.06872	3.36866	2.43586e-4	6.19627e-6	0.00399705	1.85448e-4
chr10	32102521	32102617	11442253	0	-	0.510417	(0.49,0.53]	chr10	872502	1	EXON_PSEUDO	EXON_PSEUDO	RPS4XP11	ENSG00000234335.1	ENST00000446897.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	42	2	2.69746	3.068685	3.43991	0.00380414	8.40266e-5	0.0317723	0.00158427
chr11	62720106	62720191	12410617	0	-	0.482353	(0.455,0.49]	chr11	961511	2	CDS	CDS:EXON_MRNA	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	3.00871	3.0685700000000002	3.12843	0.00392855	2.11527e-4	0.0322851	0.00328766
chr5	126810179	126810264	6202575	0	+	0.482353	(0.455,0.49]	chr5	483181	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	3.00871	3.0685700000000002	3.12843	0.00392855	2.11527e-4	0.0322851	0.00328766
chr13	99501706	99501777	13865024	0	+	0.591549	(0.59,1]	chr13	1087132	1	CDS	CDS:EXON_MRNA	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.14957	3.06854	3.98751	0.0301044	0.0126053	0.129773	0.0719957
chr11	47466230	47466330	12386770	0	-	0.3	(0.29,0.33]	chr11	956932	4	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.80161	3.068525	3.33544	0.00415667	0.0016889	0.0325842	0.0165476
chr11	75404671	75404723	12023100	0	+	0.557692	(0.53,0.59]	chr11	926991	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	182	2	2.86843	3.068365	3.2683	6.70914e-6	2.65744e-7	2.17602e-4	1.28917e-5
chr5	233560	233645	5848007	0	+	0.588235	(0.53,0.59]	chr5	459562	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000514233.1:ENST00000515752.5:ENST00000512962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	47	2	2.8006	3.0681450000000003	3.33569	0.00233666	1.57373e-4	0.0221314	0.00260854
chr17	41691511	41691607	16226851	0	+	0.364583	(0.36,0.39]	chr17	1312506	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000482111.1:ENST00000310837.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	93	2	2.97719	3.068145	3.1591	3.27287e-5	2.38245e-6	8.018e-4	8.31193e-5
chr3	15442119	15442217	3325637	0	+	0.387755	(0.36,0.39]	chr3	292874	31	UTR3	UTR3:EXON_MRNA:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.6711	3.068035	3.46497	0.00434596	0.00105709	0.0335517	0.0123035
chr1	203309306	203309405	668401	0	+	0.383838	(0.36,0.39]	chr1	67323	20	UTR3	UTR3:EXON_MRNA	BTG2	ENSG00000159388.6	ENST00000475157.1:ENST00000290551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.38564	3.0678549999999998	3.75007	0.0476159	2.12157e-4	0.17993	0.00329275
chr1	36056343	36056443	140348	0	+	0.39	(0.36,0.39]	chr1	17375	7	UTR3	UTR3:EXON_MRNA	AGO3	ENSG00000126070.20	ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.84089	3.067815	3.29474	0.0128123	0.00194306	0.0719798	0.0185233
chr2	36845768	36845867	2594571	0	-	0.414141	(0.39,0.42]	chr2	233508	82	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.98676	3.06781	4.14886	0.0439902	0.00415881	0.163596	0.0325842
chr22	19443572	19443670	18433519	0	-	0.418367	(0.39,0.42]	chr22	1570857	20	UTR3	UTR3:EXON_MRNA:INTRON	C22orf39:HIRA	ENSG00000242259.9:ENSG00000100084.14	ENST00000509549.5:ENST00000452818.1:ENST00000399562.9:ENST00000399568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	1.98676	3.06781	4.14886	0.0439902	0.00415881	0.163596	0.0325842
chr3	33388634	33388734	4112713	0	-	0.42	(0.39,0.42]	chr3	343607	4	UTR3	UTR3:EXON_MRNA	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	1.98676	3.06781	4.14886	0.0439902	0.00415881	0.163596	0.0325842
chr6	149660138	149660238	8018262	0	-	0.4	(0.39,0.42]	chr6	612659	21	UTR3	UTR3:EXON_MRNA	LATS1	ENSG00000131023.13	ENST00000543571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.98676	3.06781	4.14886	0.0439902	0.00415881	0.163596	0.0325842
chr13	49187574	49187670	14017812	0	-	0.5625	(0.53,0.59]	chr13	1099400	2	EXON_PSEUDO	EXON_PSEUDO	COX7CP1	ENSG00000235957.1	ENST00000446556.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	72	2	2.89296	3.06773	3.2425	2.6381e-4	5.81444e-5	0.00427022	0.00116944
chr1	19339529	19339617	877776	0	-	0.431818	(0.42,0.455]	chr1	90667	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	31	2	1.4554	3.067605	4.67981	0.0339916	5.38444e-4	0.140251	0.00744072
chr14	34999557	34999649	14222625	0	+	0.326087	(0.29,0.33]	chr14	1113580	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000554803.5:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000678627.1:ENST00000216774.11:ENST00000555317.5:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000555535.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.92065	3.0676	3.21455	0.0117842	0.00283988	0.0686664	0.0245061
chr14	55150798	55150848	14637405	0	-	0.32	(0.29,0.33]	chr14	1146684	1	CDS	CDS:EXON_MRNA	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7:ENST00000554007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.92065	3.0676	3.21455	0.0117842	0.00283988	0.0686664	0.0245061
chr1	231366311	231366410	1548263	0	-	0.333333	(0.33,0.36]	chr1	155129	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1:ENST00000658954.1:ENST00000670301.1:ENST00000662216.1:ENST00000654803.1:ENST00000476717.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.7655	3.067545	3.36959	0.0175892	0.0014168	0.0918323	0.0145694
chr12	56273726	56273796	13349856	0	-	0.5	(0.49,0.53]	chr12	1051006	3	CDS	CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	3.01617	3.067545	3.11892	0.00398244	8.62231e-4	0.0322851	0.0100487
chr18	35990801	35990899	17077739	0	-	0.357143	(0.33,0.36]	chr18	1403036	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RPRD1A	ENSG00000141425.18	ENST00000587563.5:ENST00000585879.1:ENST00000399022.9:ENST00000590898.5:ENST00000357384.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.7655	3.067545	3.36959	0.0175892	0.0014168	0.0918323	0.0145694
chr1	202472032	202472117	1450454	0	-	0.517647	(0.49,0.53]	chr1	145717	3	EXON_PSEUDO	EXON_PSEUDO	RP11-175B9.3	ENSG00000236439.4	ENST00000422457.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	100	2	3.00771	3.0675	3.12729	6.70462e-5	2.31864e-6	0.00142579	8.15457e-5
chr20	839888	839977	17872624	0	-	0.483146	(0.455,0.49]	chr20	1512128	6	EXON_PSEUDO	EXON_PSEUDO	RPS10P5	ENSG00000101278.6	ENST00000492704.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	61	2	3.05529	3.067355	3.07942	1.46687e-4	4.88038e-5	0.0026854	0.00100497
chr5	43495565	43495664	6561275	0	-	0.474747	(0.455,0.49]	chr5	508493	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	C5orf34:EEF1A1P19	ENSG00000172244.9:ENSG00000249855.1	ENST00000306862.7:ENST00000503655.2:ENST00000513637.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	10	83	2	2.48533	3.067205	3.64908	3.84099e-4	5.68197e-7	0.00531017	2.74237e-5
chr1	30733729	30733827	915559	0	-	0.673469	(0.59,1]	chr1	95861	14	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.97802	3.06717	3.15632	0.00133365	6.43048e-4	0.0139317	0.00850474
chr1	1663139	1663237	828558	0	-	0.438776	(0.42,0.455]	chr1	82665	18	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.07474	3.06714	4.05954	0.0338882	0.00617886	0.139841	0.0439741
chr6	170535119	170535219	8090999	0	-	0.37	(0.36,0.39]	chr6	618020	1	UTR3	UTR3:EXON_MRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.94781	3.0671150000000003	3.18642	0.00359152	3.10006e-4	0.0302391	0.0044733
chr16	70567410	70567473	15730125	0	+	0.571429	(0.53,0.59]	chr16	1253001	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000563739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	2.73974	3.06695	3.39416	0.00126006	9.00802e-4	0.013837	0.0102618
chr11	118601635	118601728	12159744	0	+	0.419355	(0.39,0.42]	chr11	937278	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	15	114	2	3.0387	3.06679	3.09488	6.62703e-6	1.46312e-6	2.15039e-4	5.51606e-5
chr22	19482758	19482827	18295389	0	+	0.434783	(0.42,0.455]	chr22	1552736	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	2.47379	3.0667850000000003	3.65978	0.00996858	2.09396e-5	0.0621728	5.04211e-4
chr6	28155996	28156095	7105811	0	+	0.424242	(0.42,0.455]	chr6	543601	21	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.94263	3.066705	3.19078	0.00766873	0.00310864	0.0503696	0.0274272
chrX	124083420	124083484	18852404	0	+	0.421875	(0.42,0.455]	chrX	1606296	1	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.94263	3.066705	3.19078	0.00766873	0.00310864	0.0503696	0.0274272
chr12	132720728	132720828	13163157	0	+	0.63	(0.59,1]	chr12	1029268	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PGAM5	ENSG00000247077.7	ENST00000498926.7:ENST00000543955.5:ENST00000454808.2	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.28778	3.066675	3.84557	0.0556537	0.0410704	0.191528	0.163285
chr19	3465645	3465745	17202180	0	+	0.66	(0.59,1]	chr19	1413755	30	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.28778	3.066675	3.84557	0.0556537	0.0410704	0.191528	0.163285
chr19	44873974	44874033	17349333	0	+	0.661017	(0.59,1]	chr19	1439143	2	CDS	CDS:EXON_MRNA	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1:ENST00000587386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.28778	3.066675	3.84557	0.0556537	0.0410704	0.191528	0.163285
chr8	85220363	85220421	9920014	0	-	0.603448	(0.59,1]	chr8	749223	2	UTR5	UTR5:EXON_MRNA	RBIS	ENSG00000176731.12	ENST00000619594.5:ENST00000614462.4:ENST00000612977.4:ENST00000545322.5:ENST00000612809.4:ENST00000523245.1:ENST00000518786.1:ENST00000521286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.28778	3.066675	3.84557	0.0556537	0.0410704	0.191528	0.163285
chr8	123015050	123015149	10055906	0	-	0.545455	(0.53,0.59]	chr8	756437	20	UTR3	UTR3:EXON_MRNA	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	3.02054	3.0666450000000003	3.11275	0.00577011	0.00407571	0.0426551	0.032143
chr7	120989621	120989721	8493735	0	+	0.56	(0.53,0.59]	chr7	648292	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000340646.9:ENST00000310396.10:ENST00000428526.5:ENST00000495036.5:ENST00000450913.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	1.96946	3.066645	4.16383	0.0082201	0.00659193	0.0534646	0.0454205
chr12	110333231	110333283	13085765	0	+	0.346154	(0.33,0.36]	chr12	1020506	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	2.17058	3.066495	3.96241	0.01664	2.45889e-6	0.0878065	8.56405e-5
chr15	60361000	60361054	15316842	0	-	0.518519	(0.49,0.53]	chr15	1208958	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.6129	3.0663549999999997	3.51981	0.0052746	6.88328e-4	0.0389109	0.00876781
chr1	40237672	40237771	152768	0	+	0.414141	(0.39,0.42]	chr1	19091	20	CDS	CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.70591	3.0660049999999996	3.4261	0.0185716	0.00107164	0.0932453	0.0118238
chr7	16681352	16681404	8148933	0	+	0.403846	(0.39,0.42]	chr7	622124	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.70591	3.0660049999999996	3.4261	0.0185716	0.00107164	0.0932453	0.0118238
chr1	1046888	1046957	2335	0	+	0.681159	(0.59,1]	chr1	521	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.5215	3.065865	3.61023	0.032241	7.25496e-4	0.135671	0.00869086
chr15	58610998	58611052	15310816	0	-	0.333333	(0.33,0.36]	chr15	1208289	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5:ENST00000462061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.47163	3.0657750000000004	3.65992	0.0129725	3.45596e-4	0.0724783	0.00486237
chr8	145054157	145054255	9653699	0	+	0.55102	(0.53,0.59]	chr8	732403	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C8orf33	ENSG00000182307.14	ENST00000524395.5:ENST00000648784.1:ENST00000647724.1:ENST00000647640.1:ENST00000648531.1:ENST00000331434.7:ENST00000530455.5:ENST00000534350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	1.96733	3.0655799999999997	4.16383	0.022694	0.00659193	0.105117	0.0454205
chr4	82856951	82857040	5496816	0	-	0.426966	(0.42,0.455]	chr4	440237	1	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5:ENST00000510167.1:ENST00000503226.5:ENST00000512732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	2.25867	3.0655	3.87233	0.0025407	4.86008e-6	0.0233955	1.51731e-4
chr1	207657218	207657314	688949	0	+	0.447917	(0.42,0.455]	chr1	69958	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	CR1L:CD46P1	ENSG00000197721.17:ENSG00000244703.3	ENST00000531844.5:ENST00000508064.7:ENST00000441364.1	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:unprocessed_pseudogene	6	52	2	2.92513	3.065155	3.20518	3.39829e-4	6.88593e-5	0.00479167	0.00146004
chr8	85329688	85329766	9920314	0	-	0.461538	(0.455,0.49]	chr8	749262	1	CDS	CDS:EXON_MRNA	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5:ENST00000524324.5:ENST00000517618.5:ENST00000519991.5:ENST00000523712.5:ENST00000520663.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.69053	3.06507	3.43961	0.0182983	8.42878e-5	0.0925808	0.0015859
chr17	8474705	8474804	16432953	0	-	0.454545	(0.42,0.455]	chr17	1340589	6	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.96788	3.065055	3.16223	0.00109784	4.45084e-4	0.0119666	0.00633715
chr5	72208778	72208876	6027885	0	+	0.418367	(0.39,0.42]	chr5	472574	37	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.98448	3.064875	3.14527	5.33048e-4	2.45186e-4	0.00742114	0.00370692
chr16	20780713	20780785	15582840	0	+	0.458333	(0.455,0.49]	chr16	1234762	1	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	3.0141	3.064825	3.11555	9.3076e-4	1.18691e-5	0.0111917	3.16198e-4
chr7	76329179	76329278	8863407	0	-	0.393939	(0.39,0.42]	chr7	677476	25	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	14	105	2	3.02697	3.0647599999999997	3.10255	5.43783e-6	2.73081e-6	1.81467e-4	9.36806e-5
chr20	31783704	31783776	17749808	0	+	0.458333	(0.455,0.49]	chr20	1498057	1	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	6	66	2	2.15985	3.06442	3.96899	0.0128965	2.27279e-7	0.0722356	1.1289e-5
chr22	42047007	42047107	18384842	0	+	0.39	(0.36,0.39]	chr22	1565258	142	INTRON	INTRON	WBP2NL	ENSG00000183066.14	ENST00000436265.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	40	2	2.53311	3.06442	3.59573	0.00345778	3.19976e-5	0.0293796	7.1032e-4
chr11	47584381	47584481	11940550	0	+	0.56	(0.53,0.59]	chr11	913297	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NDUFS3	ENSG00000213619.11	ENST00000533507.5:ENST00000263774.9:ENST00000677462.1:ENST00000678975.1:ENST00000531351.2:ENST00000525378.5:ENST00000525212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	49	2	2.56002	3.064325	3.56863	0.00634904	3.93456e-5	0.0446708	8.48445e-4
chr8	127740858	127740958	9612679	0	+	0.45	(0.42,0.455]	chr8	728499	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	10	71	2	2.39306	3.06428	3.7355	2.67192e-4	1.29688e-5	0.0039871	3.73168e-4
chr22	22550862	22550960	18445076	0	-	0.622449	(0.59,1]	chr22	1572815	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	386	2	1.88854	3.06404	4.23954	0.00211995	4.40168e-9	0.0198025	4.13768e-7
chr1	35886931	35887030	138600	0	+	0.464646	(0.455,0.49]	chr1	17155	31	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.61991	3.06398	4.50805	0.0447186	0.00122223	0.166115	0.0135383
chr10	51699157	51699254	11490833	0	-	0.536082	(0.53,0.59]	chr10	876946	15	CDS	CDS:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr12	1783976	1784073	12688989	0	+	0.56701	(0.53,0.59]	chr12	984478	2	CDS	CDS:EXON_MRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr16	2502052	2502152	15493221	0	+	0.58	(0.53,0.59]	chr16	1227507	12	UTR3	UTR3:EXON_MRNA:INTRON	TBC1D24:RP11-20I23.1	ENSG00000162065.14:ENSG00000260272.1	ENST00000567020.6:ENST00000630263.2:ENST00000646147.1:ENST00000569874.2:ENST00000627285.1:ENST00000564543.1:ENST00000564879.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr17	7511946	7512014	16105290	0	+	0.558824	(0.53,0.59]	chr17	1296785	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000576553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr22	41256767	41256824	18519004	0	-	0.561404	(0.53,0.59]	chr22	1581141	2	CDS	CDS:EXON_MRNA	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000446258.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr4	102827685	102827780	5564254	0	-	0.547368	(0.53,0.59]	chr4	444408	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000338145.7:ENST00000349311.12:ENST00000357194.10:ENST00000508238.5:ENST00000514755.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr7	139569538	139569638	9103354	0	-	0.54	(0.53,0.59]	chr7	694628	81	UTR3	UTR3:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr7	151214053	151214153	9129919	0	-	0.58	(0.53,0.59]	chr7	697851	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr8	140526848	140526948	10132111	0	-	0.55	(0.53,0.59]	chr8	760954	68	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr9	131498625	131498723	10498822	0	+	0.571429	(0.53,0.59]	chr9	793636	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.515	3.0639700000000003	3.61294	0.0310038	0.0292633	0.130016	0.129773
chr2	26195161	26195232	2565682	0	-	0.507042	(0.49,0.53]	chr2	230549	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	37	2	2.3044	3.06385	3.8233	0.00696379	1.44192e-4	0.0474632	0.00242438
chr8	100709643	100709673	9976008	0	-	0.366667	(0.36,0.39]	chr8	752675	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000523636.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517403.5:ENST00000519596.5:ENST00000518716.1:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	163	2	2.69565	3.063815	3.43198	3.32152e-6	2.18079e-8	1.09841e-4	1.65279e-6
chr5	109337230	109337330	6754764	0	-	0.5	(0.49,0.53]	chr5	518801	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.49797	3.06381	3.62965	0.00843736	7.11626e-7	0.0546021	2.99017e-5
chr1	8353093	8353193	847352	0	-	0.51	(0.49,0.53]	chr1	85701	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000467350.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.60116	3.063765	3.52637	0.0056515	6.68602e-4	0.0422191	0.00820018
chr18	59331478	59331539	17142349	0	-	0.442623	(0.42,0.455]	chr18	1407607	2	CDS	CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000592562.1:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	77	2	2.95261	3.063625	3.17464	1.03755e-4	7.70757e-6	0.00201784	2.21228e-4
chr6	119178075	119178172	7919309	0	-	0.278351	[0,0.29]	chr6	606471	10	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.76538	3.063605	4.36183	0.0117813	0.00170062	0.0690142	0.01759
chr1	21847353	21847422	890887	0	-	0.652174	(0.59,1]	chr1	92348	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000453796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	88	2	2.26579	3.06359	3.86139	0.00263137	2.54973e-4	0.0231864	0.00417441
chr1	26781430	26781526	111027	0	+	0.354167	(0.33,0.36]	chr1	13356	8	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.44986	3.063575	3.67729	0.00563343	1.89665e-5	0.0422191	4.64808e-4
chr1	21874405	21874469	891202	0	-	0.71875	(0.59,1]	chr1	92504	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000427897.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	45	2	2.61074	3.06341	3.51608	0.025486	0.00108676	0.117089	0.0118659
chr8	47893138	47893221	9816731	0	-	0.60241	(0.59,1]	chr8	742767	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.61074	3.06341	3.51608	0.025486	0.00108676	0.117089	0.0118659
chr15	66536000	66536069	14984210	0	+	0.318841	(0.29,0.33]	chr15	1178007	2	CDS	CDS:EXON_MRNA	ZWILCH	ENSG00000174442.12	ENST00000535141.6:ENST00000613446.4:ENST00000446801.6:ENST00000565627.5:ENST00000307897.10	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.49936	3.0630949999999997	3.62683	0.00917022	6.18968e-4	0.0580029	0.00822794
chr1	54225831	54225931	1028113	0	-	0.55	(0.53,0.59]	chr1	106759	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	2.504	3.06302	3.62204	0.00279409	4.3021e-4	0.0241702	0.00620274
chr1	167773235	167773265	524429	0	+	0.433333	(0.42,0.455]	chr1	56266	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.7523	3.062795	3.37329	0.0153283	0.00136107	0.0828908	0.0141115
chr1	45618141	45618236	175192	0	+	0.368421	(0.36,0.39]	chr1	22780	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1:ENST00000472408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.63115	3.06278	3.49441	0.0245975	7.81559e-4	0.114841	0.00927662
chr11	32934237	32934337	11899069	0	+	0.39	(0.36,0.39]	chr11	909001	26	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.63115	3.06278	3.49441	0.0245975	7.81559e-4	0.114841	0.00927662
chr5	72913670	72913769	6029440	0	+	0.383838	(0.36,0.39]	chr5	472817	51	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.63115	3.06278	3.49441	0.0245975	7.81559e-4	0.114841	0.00927662
chr5	138887565	138887642	6247615	0	+	0.38961	(0.36,0.39]	chr5	486791	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000517534.5:ENST00000520400.5:ENST00000518381.5:ENST00000522013.5:ENST00000523298.5:ENST00000520865.5:ENST00000523685.5:ENST00000517533.5:ENST00000519634.5:ENST00000521683.5:ENST00000517656.5:ENST00000521640.5:ENST00000519116.5:ENST00000522052.5:ENST00000540387.5:ENST00000520522.1:ENST00000517904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.63115	3.06278	3.49441	0.0245975	7.81559e-4	0.114841	0.00927662
chr5	138567648	138567722	6862482	0	-	0.432432	(0.42,0.455]	chr5	525229	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	67	2	2.92031	3.062745	3.20518	6.88593e-5	4.70001e-5	0.00146004	9.75983e-4
chr9	83683008	83683066	10710584	0	-	0.431034	(0.42,0.455]	chr9	810222	2	CDS	CDS:EXON_MRNA:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.03532	3.0625600000000004	4.0898	0.040947	0.00698074	0.163285	0.0473262
chr2	149579575	149579648	2932991	0	-	0.534247	(0.53,0.59]	chr2	260053	3	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.64475	3.06233	3.47991	0.00453071	6.7738e-5	0.0351187	0.0013157
chr4	56446694	56446756	4848587	0	+	0.451613	(0.42,0.455]	chr4	399434	1	CDS	CDS:UTR5:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.99666	3.062305	3.12795	0.00104775	1.0291e-4	0.0123035	0.00184556
chr7	100628223	100628306	8952239	0	-	0.626506	(0.59,1]	chr7	684172	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	160	2	2.32754	3.06229	3.79704	0.0035583	9.30707e-7	0.0300503	3.76778e-5
chr7	135627972	135628041	8553129	0	+	0.536232	(0.53,0.59]	chr7	652864	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.99511	3.06227	3.12943	9.46531e-4	4.81557e-4	0.010681	0.00677016
chr8	47782524	47782598	9815560	0	-	0.581081	(0.53,0.59]	chr8	742489	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000521331.5:ENST00000432581.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	3.00674	3.062265	3.11779	8.9408e-4	5.11883e-4	0.01086	0.00664583
chr5	149550074	149550127	6910815	0	-	0.509434	(0.49,0.53]	chr5	528568	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	1.69633	3.062115	4.4279	0.0531914	0.00196987	0.184818	0.0193972
chrX	110176408	110176506	18820970	0	+	0.5	(0.49,0.53]	chrX	1603939	31	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	2.63275	3.06209	3.49143	2.97496e-4	6.13943e-5	0.00470429	0.00122382
chr19	6441046	6441144	17442467	0	-	0.612245	(0.59,1]	chr19	1456911	11	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	1.67735	3.06203	4.44671	0.0534288	0.00931497	0.184995	0.0586162
chr19	32597099	32597194	17536856	0	-	0.389474	(0.36,0.39]	chr19	1471456	2	UTR3	UTR3:EXON_MRNA	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.1437	3.061975	3.98025	0.0340515	0.00881716	0.141465	0.0562439
chr10	102361021	102361086	11227938	0	+	0.461538	(0.455,0.49]	chr10	855041	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	GBF1	ENSG00000107862.6	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000369983.4:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000679093.1:ENST00000678924.1:ENST00000476019.1:ENST00000677662.1:ENST00000679139.1:ENST00000677504.1:ENST00000677017.1:ENST00000677627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.10347	3.061935	4.0204	0.0313707	0.00736097	0.13127	0.0490627
chr14	20456018	20456101	14171269	0	+	0.481928	(0.455,0.49]	chr14	1109106	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000554813.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555306.5:ENST00000557344.5:ENST00000557181.5:ENST00000554325.1:ENST00000555839.5:ENST00000557159.5:ENST00000553368.1:ENST00000557054.1:ENST00000556054.5:ENST00000557592.5:ENST00000557365.1:ENST00000557150.5:ENST00000438886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.10347	3.061935	4.0204	0.0313707	0.00736097	0.13127	0.0490627
chr16	71734608	71734707	16007968	0	-	0.484848	(0.455,0.49]	chr16	1286080	1	CDS	CDS:EXON_MRNA	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.10347	3.061935	4.0204	0.0313707	0.00736097	0.13127	0.0490627
chr8	30679519	30679619	9781757	0	-	0.49	(0.455,0.49]	chr8	739674	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1:ENST00000537535.5:ENST00000541648.5:ENST00000546342.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.10347	3.061935	4.0204	0.0313707	0.00736097	0.13127	0.0490627
chr20	49090741	49090839	17811813	0	+	0.418367	(0.39,0.42]	chr20	1506574	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	53	2	2.27503	3.061855	3.84868	0.0025739	5.68075e-6	0.0235767	1.72325e-4
chr19	3062173	3062200	17427017	0	-	0.444444	(0.42,0.455]	chr19	1453958	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000586742.5:ENST00000592330.5:ENST00000585557.1:ENST00000585782.1:ENST00000586003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	1.72071	3.0617349999999997	4.40276	0.0499984	0.0017618	0.179758	0.0180053
chr1	112696773	112696846	411749	0	+	0.534247	(0.53,0.59]	chr1	40621	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOV10	ENSG00000155363.18	ENST00000413052.6:ENST00000369645.5:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2:ENST00000488160.5:ENST00000482545.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr11	119311089	119311185	12626858	0	-	0.541667	(0.53,0.59]	chr11	979939	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCAM	ENSG00000076706.17	ENST00000264036.6:ENST00000528533.5:ENST00000525586.5:ENST00000524940.5:ENST00000528976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr12	6967606	6967675	13188882	0	-	0.565217	(0.53,0.59]	chr12	1032800	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000545555.2:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr12	52949517	52949615	13337453	0	-	0.55102	(0.53,0.59]	chr12	1048664	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000546897.5:ENST00000546826.5:ENST00000548998.5:ENST00000619952.2:ENST00000549198.1:ENST00000551318.1:ENST00000546921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr14	94726977	94727076	14470718	0	+	0.535354	(0.53,0.59]	chr14	1130296	8	EXON_PSEUDO	EXON_PSEUDO	RPSAP4	ENSG00000239269.1	ENST00000488229.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr17	38736089	38736170	16531390	0	-	0.580247	(0.53,0.59]	chr17	1353291	1	CDS	CDS:EXON_MRNA	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr19	45614604	45614700	17589722	0	-	0.5625	(0.53,0.59]	chr19	1480271	1	CDS	CDS:UTR3:EXON_MRNA	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000592433.5:ENST00000586405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr3	195779980	195780079	4661066	0	-	0.575758	(0.53,0.59]	chr3	385270	13	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr6	30713255	30713354	7659135	0	-	0.565657	(0.53,0.59]	chr6	584245	15	CDS	CDS:UTR3:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000613547.4	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr6	37475318	37475403	7137944	0	+	0.576471	(0.53,0.59]	chr6	550195	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CMTR1	ENSG00000137200.13	ENST00000373451.9:ENST00000475364.1:ENST00000457419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr6	117999163	117999258	7354840	0	+	0.578947	(0.53,0.59]	chr6	565161	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	SLC35F1:RP11-632C17__A.1	ENSG00000196376.11:ENSG00000230202.1	ENST00000360388.9:ENST00000443998.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr7	75058678	75058769	8857579	0	-	0.571429	(0.53,0.59]	chr7	676629	2	CDS	CDS:EXON_MRNA	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000618102.4:ENST00000616051.1:ENST00000618035.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr9	34093285	34093366	10634816	0	-	0.555556	(0.53,0.59]	chr9	803981	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9:ENST00000466402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr9	94438400	94438464	10367570	0	+	0.578125	(0.53,0.59]	chr9	780543	1	CDS	CDS:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr9	133153126	133153216	10879514	0	-	0.533333	(0.53,0.59]	chr9	825591	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr9	136862118	136862200	10892338	0	-	0.585366	(0.53,0.59]	chr9	827987	1	UTR3	UTR3:EXON_MRNA	EDF1	ENSG00000107223.13	ENST00000224073.6:ENST00000371649.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.50447	3.061515	3.61856	0.0303021	0.0301162	0.130016	0.129773
chr16	58528474	58528561	15966306	0	-	0.425287	(0.42,0.455]	chr16	1281081	1	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.81137	3.06149	3.31161	0.0120386	0.00186138	0.0700876	0.018635
chr7	23351492	23351586	8724615	0	-	0.43617	(0.42,0.455]	chr7	666065	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.81137	3.06149	3.31161	0.0120386	0.00186138	0.0700876	0.018635
chr8	140915316	140915416	10135874	0	-	0.5	(0.49,0.53]	chr8	761335	53	INTRON	INTRON	PTK2	ENSG00000169398.19	ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000520475.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521395.5:ENST00000523675.1:ENST00000521332.5:ENST00000524040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.78962	3.06143	3.33324	0.0129044	0.00162947	0.0725185	0.0169972
chr1	17022668	17022730	873029	0	-	0.564516	(0.53,0.59]	chr1	89435	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000475049.5:ENST00000485092.5:ENST00000485515.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	2.65894	3.061215	3.46349	0.0193255	9.2216e-4	0.0943643	0.0104432
chr16	28734519	28734599	15619329	0	+	0.5875	(0.53,0.59]	chr16	1238323	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000569005.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	28	2	2.65894	3.061215	3.46349	0.0193255	9.2216e-4	0.0943643	0.0104432
chr4	46723829	46723925	5405883	0	-	0.541667	(0.53,0.59]	chr4	432788	1	EXON_PSEUDO	EXON_PSEUDO	RAC1P2	ENSG00000249936.3	ENST00000511164.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.65894	3.061215	3.46349	0.0193255	9.2216e-4	0.0943643	0.0104432
chr1	175014768	175014851	1374929	0	-	0.518072	(0.49,0.53]	chr1	140177	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MRPS14	ENSG00000120333.4	ENST00000498253.1:ENST00000476371.1:ENST00000367677.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.8671	3.06112	3.25514	0.0100489	0.00227467	0.0623334	0.0209546
chr12	49032668	49032768	13323303	0	-	0.53	(0.49,0.53]	chr12	1045457	16	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.8671	3.06112	3.25514	0.0100489	0.00227467	0.0623334	0.0209546
chr9	37203438	37203538	10253678	0	+	0.52	(0.49,0.53]	chr9	771611	165	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.8671	3.06112	3.25514	0.0100489	0.00227467	0.0623334	0.0209546
chr2	43979878	43979932	2623903	0	-	0.444444	(0.42,0.455]	chr2	236278	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1:ENST00000682496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	3.05889	3.06091	3.06293	0.00524205	0.00492128	0.0399155	0.0366648
chr2	112621808	112621897	2849006	0	-	0.426966	(0.42,0.455]	chr2	254213	1	EXON_PSEUDO	EXON_PSEUDO	AC079922.2	ENSG00000231747.1	ENST00000443291.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	22	2	3.05889	3.06091	3.06293	0.00524205	0.00492128	0.0399155	0.0366648
chr3	45743569	45743652	3450162	0	+	0.421687	(0.42,0.455]	chr3	300537	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	3.05889	3.06091	3.06293	0.00524205	0.00492128	0.0399155	0.0366648
chrX	37728089	37728180	18656810	0	+	0.43956	(0.42,0.455]	chrX	1591367	6	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	3.05889	3.06091	3.06293	0.00524205	0.00492128	0.0399155	0.0366648
chr1	111159379	111159453	405956	0	+	0.459459	(0.455,0.49]	chr1	39877	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000480324.5:ENST00000476865.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5:ENST00000615636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	40	2	2.30139	3.060845	3.8203	0.0530131	6.9787e-6	0.195536	2.0562e-4
chr11	6617685	6617745	12249967	0	-	0.616667	(0.59,1]	chr11	946865	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TPP1	ENSG00000166340.18	ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000436873.7:ENST00000530040.2:ENST00000524903.2:ENST00000645020.1:ENST00000524788.2:ENST00000644151.1:ENST00000534644.6:ENST00000428886.7:ENST00000528571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.81459	3.060835	3.30708	0.00278977	0.00252451	0.0249234	0.0226777
chr9	129006238	129006303	10482852	0	+	0.523077	(0.49,0.53]	chr9	791181	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.51671	3.060735	3.60476	0.00768763	4.52633e-4	0.050396	0.00642319
chr16	69332690	69332790	15994014	0	-	0.41	(0.39,0.42]	chr16	1284076	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COG8:RP11-343C2.12	ENSG00000213380.16:ENSG00000272617.3	ENST00000562595.5:ENST00000306875.10:ENST00000562949.1:ENST00000562081.2	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.18155	3.06065	3.93975	0.0283931	0.0105893	0.127654	0.0644466
chr2	230783423	230783522	2421708	0	+	0.393939	(0.39,0.42]	chr2	218039	36	INTRON	INTRON	CAB39	ENSG00000135932.11	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7:ENST00000614925.1:ENST00000484398.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.18155	3.06065	3.93975	0.0283931	0.0105893	0.127654	0.0644466
chr3	33400188	33400282	4112835	0	-	0.414894	(0.39,0.42]	chr3	343628	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000447368.6:ENST00000283628.9:ENST00000486388.5:ENST00000411650.5:ENST00000490112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.18155	3.06065	3.93975	0.0283931	0.0105893	0.127654	0.0644466
chr7	143307404	143307501	8581158	0	+	0.402062	(0.39,0.42]	chr7	655693	25	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.18155	3.06065	3.93975	0.0283931	0.0105893	0.127654	0.0644466
chr14	96556174	96556253	14476140	0	+	0.506329	(0.49,0.53]	chr14	1130871	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.78794	3.06059	3.33324	0.00251838	0.00162947	0.0226599	0.0169972
chr12	31282811	31282871	13279806	0	-	0.433333	(0.42,0.455]	chr12	1041231	1	CDS	CDS:UTR3:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.24157	3.0603949999999998	3.87922	0.0087798	1.04705e-4	0.0562439	0.0020295
chr1	26281322	26281422	108921	0	+	0.58	(0.53,0.59]	chr1	12976	3	UTR3	UTR3:EXON_MRNA	SH3BGRL3	ENSG00000142669.15	ENST00000270792.10:ENST00000319041.6	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	3.00086	3.06039	3.11992	2.19267e-4	1.09102e-4	0.00365543	0.00194222
chr1	205713317	205713416	1461988	0	-	0.333333	(0.33,0.36]	chr1	147460	6	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	2.3652	3.0603	3.7554	8.24779e-4	1.62733e-5	0.00968205	4.52905e-4
chr1	153960393	153960491	1300330	0	-	0.693878	(0.59,1]	chr1	130745	3	CDS	CDS:UTR3:EXON_MRNA	SLC39A1:RP11-422P24.15	ENSG00000143570.19:ENSG00000285779.1	ENST00000617697.4:ENST00000537590.5:ENST00000621013.4:ENST00000356205.9:ENST00000368623.7:ENST00000368621.5:ENST00000310483.10:ENST00000648921.1:ENST00000413622.5:ENST00000417348.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	60	2	2.9891200000000002	3.0602600000000004	3.1314	0.00823979	6.69043e-4	0.0540283	0.00820018
chr14	101975724	101975799	14495047	0	+	0.306667	(0.29,0.33]	chr14	1132945	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	2.14085	3.06013	3.97941	0.0117968	5.81801e-5	0.0686664	0.00116944
chr3	23891170	23891264	3358519	0	+	0.404255	(0.39,0.42]	chr3	294120	7	UTR3	UTR3:EXON_MRNA	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000424381.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.18025	3.060105	3.93996	0.00841622	0.00587938	0.054565	0.0424857
chr16	21655332	21655432	15585603	0	+	0.42	(0.39,0.42]	chr16	1235204	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	METTL9	ENSG00000197006.14	ENST00000396014.8:ENST00000358154.8:ENST00000615720.4:ENST00000564733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.88836	3.06005	3.23174	0.0102432	2.82122e-4	0.062872	0.00415762
chr14	100337131	100337202	14788529	0	-	0.535211	(0.53,0.59]	chr14	1158699	2	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000557614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	81	2	2.8006	3.0599600000000002	3.31932	0.00233666	2.84671e-6	0.0221314	9.64791e-5
chr15	41280088	41280188	14885232	0	+	0.52	(0.49,0.53]	chr15	1169243	8	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.10817	3.05994	4.01171	0.00798134	4.88513e-5	0.0527008	0.00100497
chr17	44014400	44014500	16555948	0	-	0.63	(0.59,1]	chr17	1358827	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8:ENST00000587529.1:ENST00000585950.5:ENST00000592127.5:ENST00000590905.1:ENST00000586174.1	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.41177	3.059915	3.70806	0.00235332	5.14321e-4	0.0215127	0.00719062
chr6	34245557	34245653	7124350	0	+	0.5625	(0.53,0.59]	chr6	548262	8	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	77	750	2	2.97294	3.05987	3.1468	4.25095e-8	3.77415e-9	2.96365e-6	3.34281e-7
chr1	201876828	201876928	661512	0	+	0.41	(0.39,0.42]	chr1	66335	7	UTR3	UTR3:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.99911	3.0598549999999998	4.1206	0.0477207	0.00597537	0.17993	0.0428562
chr17	39257960	39258060	16534337	0	-	0.41	(0.39,0.42]	chr17	1353914	54	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.99911	3.0598549999999998	4.1206	0.0477207	0.00597537	0.17993	0.0428562
chr12	68841147	68841247	12941200	0	+	0.3	(0.29,0.33]	chr12	1008678	14	UTR3	UTR3:EXON_MRNA	MDM2	ENSG00000135679.26	ENST00000258149.11	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.66431	3.059825	4.45534	0.0225076	0.00110984	0.10505	0.0127344
chrX	53192743	53192837	19075188	0	-	0.574468	(0.53,0.59]	chrX	1622218	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	KDM5C	ENSG00000126012.12	ENST00000452825.7:ENST00000375401.8:ENST00000404049.7	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.37399	3.059705	3.74542	0.0126178	2.30148e-4	0.0717599	0.00352524
chr1	151176473	151176558	1292172	0	-	0.317647	(0.29,0.33]	chr1	128990	3	UTR3	UTR3:EXON_MRNA	VPS72	ENSG00000163159.14	ENST00000368892.9:ENST00000354473.4	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.35931	3.0597	3.76009	0.00615202	3.08518e-4	0.0438642	0.00476847
chr1	109345750	109345815	1219802	0	-	0.446154	(0.42,0.455]	chr1	119002	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.57051	3.059445	3.54838	0.0265466	5.9986e-4	0.120071	0.0075062
chr3	196820468	196820567	3990097	0	+	0.454545	(0.42,0.455]	chr3	336189	2	CDS	CDS:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7:ENST00000426668.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.57051	3.059445	3.54838	0.0265466	5.9986e-4	0.120071	0.0075062
chr4	120060924	120060977	5621473	0	-	0.45283	(0.42,0.455]	chr4	448086	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000512484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.57051	3.059445	3.54838	0.0265466	5.9986e-4	0.120071	0.0075062
chr4	128069212	128069312	5639333	0	-	0.44	(0.42,0.455]	chr4	449279	3	EXON_PSEUDO	EXON_PSEUDO	RP11-214O14.1	ENSG00000241651.4	ENST00000475247.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	24	2	2.57051	3.059445	3.54838	0.0265466	5.9986e-4	0.120071	0.0075062
chrX	78104340	78104405	18746921	0	+	0.507692	(0.49,0.53]	chrX	1599802	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000477335.5:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	66	2	2.57142	3.059445	3.54747	8.92776e-4	6.21089e-6	0.0108581	1.85694e-4
chr1	155256174	155256272	1307278	0	-	0.581633	(0.53,0.59]	chr1	132092	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.89916	3.059285	3.21941	0.00890406	0.00266171	0.0565003	0.0240332
chr16	72086141	72086240	16010321	0	-	0.545455	(0.53,0.59]	chr16	1286487	14	UTR3	UTR3:EXON_MRNA:INTRON	TXNL4B	ENSG00000140830.9	ENST00000562153.5:ENST00000268483.8:ENST00000423037.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.89916	3.059285	3.21941	0.00890406	0.00266171	0.0565003	0.0240332
chr17	28860453	28860553	16177676	0	+	0.55	(0.53,0.59]	chr17	1305665	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ERAL1	ENSG00000132591.12	ENST00000254928.10:ENST00000461894.5:ENST00000471992.1:ENST00000583487.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.89916	3.059285	3.21941	0.00890406	0.00266171	0.0565003	0.0240332
chr2	96304786	96304868	2790598	0	-	0.585366	(0.53,0.59]	chr2	248861	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.89916	3.059285	3.21941	0.00890406	0.00266171	0.0565003	0.0240332
chr16	21836567	21836665	15889961	0	-	0.581633	(0.53,0.59]	chr16	1271456	19	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.78471	3.0592750000000004	4.33384	0.0122294	1.65563e-7	0.0703354	9.74137e-6
chr1	154378500	154378598	1302975	0	-	0.55102	(0.53,0.59]	chr1	131245	4	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	RP11-350G8.4:RPSAP17	ENSG00000237920.2:ENSG00000226855.1	ENST00000449634.2:ENST00000437336.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	2	27	2	2.90978	3.05926	3.20874	0.00857883	0.00278422	0.0552386	0.0241009
chr1	156139390	156139484	486176	0	+	0.531915	(0.53,0.59]	chr1	51303	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368300.9:ENST00000675881.1:ENST00000448611.6:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	36	2	2.99511	3.0592550000000003	3.1234	0.00390623	9.46531e-4	0.0322851	0.010681
chr1	26781333	26781430	111026	0	+	0.381443	(0.36,0.39]	chr1	13356	7	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.63115	3.0589199999999996	3.48669	0.0245975	6.40815e-5	0.114841	0.00125657
chr22	21690624	21690711	18303708	0	+	0.37931	(0.36,0.39]	chr22	1554363	4	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.93136	3.05889	3.18642	0.00811967	0.00359152	0.0528637	0.0302391
chr22	20564608	20564688	18298965	0	+	0.5	(0.49,0.53]	chr22	1553471	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000473028.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	77	2	2.49129	3.05888	3.62647	1.42011e-4	2.59929e-5	0.00239476	6.68294e-4
chr6	34240736	34240780	7124297	0	+	0.545455	(0.53,0.59]	chr6	548241	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	HMGA1:MIR6835	ENSG00000137309.20:ENSG00000276404.1	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1:ENST00000374116.3:ENST00000621552.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	31	304	2	3.0252	3.058875	3.09255	4.52402e-7	7.81051e-8	2.26714e-5	4.52048e-6
chr4	56502914	56503010	4849158	0	+	0.395833	(0.39,0.42]	chr4	399579	12	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	79	2	2.82444	3.05877	3.2931	1.06946e-4	3.08248e-6	0.00206452	1.0335e-4
chr19	10328738	10328836	17459426	0	-	0.673469	(0.59,1]	chr19	1460758	2	CDS	CDS:UTR3:EXON_MRNA	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000591969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.24397	3.05865	3.87333	0.0348991	0.0206682	0.141505	0.0997234
chr10	96750287	96750374	11210216	0	+	0.643678	(0.59,1]	chr10	852817	1	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	308	2	2.74783	3.0586349999999998	3.36944	3.95854e-5	1.06879e-6	9.47333e-4	4.23248e-5
chr22	41688796	41688893	18520389	0	-	0.628866	(0.59,1]	chr22	1581394	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:INTRON	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648674.1:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000469522.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.9891200000000002	3.0584100000000003	3.1277	0.00823979	0.00490589	0.0540283	0.0366648
chr3	50607793	50607880	4179548	0	-	0.643678	(0.59,1]	chr3	352075	2	CDS	CDS:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.9891200000000002	3.0584100000000003	3.1277	0.00823979	0.00490589	0.0540283	0.0366648
chr6	31811104	31811200	7662713	0	-	0.614583	(0.59,1]	chr6	585379	11	CDS	CDS:EXON_MRNA	HSPA1L	ENSG00000204390.10	ENST00000375654.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	3.0542	3.05839	3.06258	0.00663549	0.00616167	0.0456243	0.0438642
chr2	241239747	241239820	3250664	0	-	0.60274	(0.59,1]	chr2	287026	3	CDS	CDS:EXON_MRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000479169.5:ENST00000427487.5:ENST00000459788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	41	2	1.77181	3.0583400000000003	4.34487	0.0267363	0.0123678	0.118611	0.0705839
chr3	51995060	51995106	4181361	0	-	0.456522	(0.455,0.49]	chr3	352468	1	CDS	CDS:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5:ENST00000492277.5:ENST00000481629.1:ENST00000486565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	111	2	2.97919	3.058315	3.13744	8.43808e-5	6.42781e-7	0.00173269	2.74822e-5
chr16	69699820	69699919	15725357	0	+	0.424242	(0.42,0.455]	chr16	1252140	36	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	2.70611	3.0582599999999998	3.41041	0.00397496	1.00299e-4	0.0322851	0.00180803
chr11	313996	314083	11756463	0	+	0.45977	(0.455,0.49]	chr11	897763	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000680299.1:ENST00000679353.1:ENST00000679982.1:ENST00000681350.1:ENST00000680855.1:ENST00000680310.1:ENST00000681702.1:ENST00000681111.1:ENST00000680342.1:ENST00000680870.1:ENST00000681293.1:ENST00000680802.1:ENST00000528780.5:ENST00000328221.5:ENST00000681761.1:ENST00000681821.1:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	190	2	3.00558	3.0581300000000002	3.11068	4.55914e-7	3.06232e-7	2.28146e-5	1.45748e-5
chr14	54424351	54424450	14635462	0	-	0.262626	[0,0.29]	chr14	1146393	9	UTR3	UTR3:EXON_MRNA	CNIH1	ENSG00000100528.12	ENST00000216416.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.8304	3.058115	3.28583	0.0121878	0.00346525	0.0701019	0.0293796
chr2	85049553	85049648	1922209	0	+	0.4	(0.39,0.42]	chr2	180781	3	CDS	CDS:EXON_MRNA	KCMF1	ENSG00000176407.18	ENST00000409785.9	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	2.35464	3.0580249999999998	3.76141	3.42068e-4	2.14058e-4	0.00482266	0.00359478
chr12	51242849	51242947	12876230	0	+	0.387755	(0.36,0.39]	chr12	1000617	3	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	67	2	2.92197	3.057725	3.19348	1.60658e-4	6.62753e-6	0.00287058	1.96367e-4
chr16	30654921	30655018	15630606	0	+	0.649485	(0.59,1]	chr16	1240318	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRR14	ENSG00000156858.12	ENST00000564946.5:ENST00000300835.9:ENST00000287463.8:ENST00000542965.2:ENST00000567322.1:ENST00000571654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	1.88006	3.05768	4.2353	0.0554008	0.0165254	0.191173	0.0873033
chr5	138391684	138391780	6244194	0	+	0.5	(0.49,0.53]	chr5	486509	8	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.99044	3.05767	4.1249	0.0435903	2.4461e-5	0.170594	5.72214e-4
chr6	152975389	152975486	8029551	0	-	0.412371	(0.39,0.42]	chr6	614134	6	CDS	CDS:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	1.91489	3.05759	4.20029	0.0197788	1.46608e-5	0.0960939	3.77398e-4
chr3	20169082	20169181	4076336	0	-	0.393939	(0.39,0.42]	chr3	341644	75	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.88836	3.05749	3.22662	0.0102432	0.00257296	0.062872	0.0229363
chr11	57425988	57426072	12394630	0	-	0.488095	(0.455,0.49]	chr11	958698	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC43A3	ENSG00000134802.18	ENST00000395124.6:ENST00000395123.6:ENST00000352187.5:ENST00000529554.5:ENST00000533524.5:ENST00000530005.5:ENST00000528098.5:ENST00000525474.5:ENST00000529112.5:ENST00000526125.5:ENST00000530232.1:ENST00000528187.5:ENST00000529494.5:ENST00000533245.5:ENST00000533235.5:ENST00000524863.5:ENST00000532795.5:ENST00000533051.5:ENST00000529896.1:ENST00000526621.5:ENST00000530316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.53963	3.0574399999999997	3.57525	0.00112063	5.24878e-4	0.0128408	0.00677371
chr5	72208581	72208680	6027883	0	+	0.30303	(0.29,0.33]	chr5	472574	35	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.99415	3.05741	4.12067	0.0333928	2.40819e-5	0.140128	5.6648e-4
chr6	26197073	26197141	7647200	0	-	0.691176	(0.59,1]	chr6	582541	3	CDS	CDS:UTR3:EXON_MRNA	RP1-34B20.21:H3C4	ENSG00000282988.2:ENSG00000197409.8	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000356476.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	95	2	2.01818	3.057	4.09582	0.00523578	8.09451e-5	0.038667	0.00167997
chr11	57332624	57332701	12394113	0	-	0.493506	(0.49,0.53]	chr11	958546	1	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	2.38935	3.056975	3.7246	0.00488689	1.36405e-5	0.0376157	3.54667e-4
chr15	55234781	55234834	15292946	0	-	0.358491	(0.33,0.36]	chr15	1207091	1	CDS	CDS:EXON_MRNA	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5:ENST00000567380.5:ENST00000565972.5:ENST00000563262.5:ENST00000568803.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.97606	3.05677	3.13748	0.00871774	0.00379835	0.0558165	0.0307587
chr11	59638192	59638290	12401037	0	-	0.459184	(0.455,0.49]	chr11	959467	16	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.75044	3.056755	4.36307	0.0463133	0.00218641	0.170072	0.0208941
chr16	27492616	27492713	15899716	0	-	0.484536	(0.455,0.49]	chr16	1273028	1	CDS	CDS:EXON_MRNA:INTRON	GTF3C1	ENSG00000077235.18	ENST00000561623.5:ENST00000356183.9:ENST00000569653.1	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.75044	3.056755	4.36307	0.0463133	0.00218641	0.170072	0.0208941
chr9	121180307	121180406	10835878	0	-	0.353535	(0.33,0.36]	chr9	820919	23	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	1.82394	3.0565999999999995	4.28926	0.0494504	7.83197e-6	0.18557	2.24375e-4
chr6	44254805	44254905	7710359	0	-	0.59	(0.53,0.59]	chr6	591840	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC35B2	ENSG00000157593.19	ENST00000495706.1:ENST00000393810.5:ENST00000393812.4:ENST00000615337.4:ENST00000538577.5:ENST00000537814.2:ENST00000619636.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	45	2	2.98881	3.056105	3.1234	0.00390623	2.35204e-4	0.0322851	0.00356397
chr10	69171563	69171661	11094669	0	+	0.306122	(0.29,0.33]	chr10	843467	4	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.63162	3.055815	3.48001	0.00179843	0.00126219	0.0174371	0.013837
chr15	66491358	66491451	14983877	0	+	0.322581	(0.29,0.33]	chr15	1177919	9	UTR3	UTR3:EXON_MRNA	MAP2K1	ENSG00000169032.10	ENST00000307102.10	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.63162	3.055815	3.48001	0.00179843	0.00126219	0.0174371	0.013837
chr17	48622027	48622123	16578563	0	-	0.416667	(0.39,0.42]	chr17	1361937	10	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	3.00397	3.05576	3.10755	8.22558e-5	5.39401e-6	0.0017048	1.64762e-4
chr5	140537337	140537421	6255212	0	+	0.511905	(0.49,0.53]	chr5	487646	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000495578.1:ENST00000421706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	2.59093	3.05537	3.51981	7.86196e-4	6.88328e-4	0.00929193	0.00876781
chr1	114707353	114707453	1239479	0	-	0.34	(0.33,0.36]	chr1	121309	30	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.93923	3.055225	4.17122	0.0142064	1.72402e-5	0.0777259	4.33531e-4
chr5	179617798	179617865	7002093	0	-	0.41791	(0.39,0.42]	chr5	536258	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPH1	ENSG00000169045.17	ENST00000393432.8:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000329433.10:ENST00000519033.5:ENST00000502632.5:ENST00000519958.5:ENST00000504549.5:ENST00000514731.5:ENST00000521173.5:ENST00000523921.1:ENST00000503105.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	57	2	2.51567	3.055155	3.59464	3.21874e-4	3.6617e-5	0.00461043	8.82767e-4
chr17	81899965	81900032	16381602	0	+	0.61194	(0.59,1]	chr17	1332123	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ANAPC11	ENSG00000141552.18	ENST00000571570.5:ENST00000572639.5:ENST00000612413.4:ENST00000579978.5:ENST00000571024.6:ENST00000344877.10:ENST00000577425.5:ENST00000574924.6:ENST00000572851.6:ENST00000357385.7:ENST00000571874.6:ENST00000578550.5:ENST00000577747.5:ENST00000579133.5:ENST00000392376.7:ENST00000583839.1:ENST00000578544.1:ENST00000575195.2:ENST00000585259.1:ENST00000573956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	44	2	2.69477	3.055065	3.41536	0.020208	0.00164655	0.0978331	0.0163443
chrX	154354824	154354906	19278032	0	-	0.646341	(0.59,1]	chrX	1638285	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000438732.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	44	2	2.69477	3.055065	3.41536	0.020208	0.00164655	0.0978331	0.0163443
chr6	31806896	31806966	7662696	0	-	0.685714	(0.59,1]	chr6	585376	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	71	2	2.82148	3.055045	3.28861	0.0028753	7.99341e-4	0.0256141	0.00939703
chr19	11113277	11113363	17230108	0	+	0.616279	(0.59,1]	chr19	1419586	1	CDS	CDS:EXON_MRNA:PRIMIRNA	LDLR:MIR6886	ENSG00000130164.14:ENSG00000284553.1	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1:ENST00000619864.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	6	111	2	2.93771	3.05502	3.17233	0.00168288	4.78944e-5	0.0175167	9.91058e-4
chr6	30704710	30704809	7659044	0	-	0.535354	(0.53,0.59]	chr6	584223	12	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	3.0402	3.054795	3.06939	6.54756e-4	2.1584e-5	0.00860229	5.15243e-4
chr7	4769147	4769247	8109650	0	+	0.47	(0.455,0.49]	chr7	619657	68	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.04847	3.05465	4.06083	0.0192065	3.56832e-5	0.0943643	7.81595e-4
chr1	17439544	17439610	874340	0	-	0.469697	(0.455,0.49]	chr1	89672	1	UTR5	UTR5:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	2.24736	3.0544450000000003	3.86153	0.00101114	5.21014e-6	0.0120143	1.60138e-4
chr15	45609410	45609510	14904336	0	+	0.32	(0.29,0.33]	chr15	1172437	30	UTR3	UTR3:EXON_MRNA:INTRON	RP11-96O20.4:BLOC1S6	ENSG00000260170.1:ENSG00000104164.12	ENST00000564080.1:ENST00000220531.9:ENST00000564310.2:ENST00000565323.6:ENST00000568816.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.24226	3.054385	3.86651	0.0306054	0.0112245	0.130226	0.0665375
chr4	75949998	75950092	5474551	0	-	0.329787	(0.29,0.33]	chr4	438691	2	UTR3	UTR3:EXON_MRNA:INTRON	SDAD1	ENSG00000198301.12	ENST00000502543.5:ENST00000395710.5:ENST00000356260.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	2.24226	3.054385	3.86651	0.0306054	0.0112245	0.130226	0.0665375
chr6	26523107	26523206	7102711	0	+	0.30303	(0.29,0.33]	chr6	543198	15	EXON_LNCRNA	EXON_LNCRNA	HCG11	ENSG00000228223.3	ENST00000411553.3	lncRNA	lncRNA	lncRNA	lncRNA	2	12	2	2.24226	3.054385	3.86651	0.0306054	0.0112245	0.130226	0.0665375
chr1	225922293	225922383	1531307	0	-	0.544444	(0.53,0.59]	chr1	153184	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RP4-559A3.7:PYCR2:MIR6741	ENSG00000255835.1:ENSG00000143811.19:ENSG00000284519.1	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000446534.1:ENST00000618782.1:ENST00000489681.5:ENST00000472798.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	3	35	2	2.72478	3.054125	3.38347	0.00324675	0.00132446	0.0282494	0.0138834
chr15	71164569	71164669	15364105	0	-	0.34	(0.33,0.36]	chr15	1213704	164	INTRON	INTRON	THSD4-AS1	ENSG00000259964.7	ENST00000561571.5	lncRNA	lncRNA	lncRNA	lncRNA	9	58	2	2.79426	3.053855	3.31345	1.14296e-4	1.26992e-5	0.00202776	3.67844e-4
chr1	19115397	19115477	876032	0	-	0.5625	(0.53,0.59]	chr1	90032	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.71318	3.05367	3.39416	0.00340745	0.00126006	0.0283456	0.013837
chrX	48913560	48913655	19063604	0	-	0.452632	(0.42,0.455]	chrX	1620588	5	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.7523	3.053605	3.35491	0.0153283	1.39104e-4	0.0828908	0.00235518
chr1	31908462	31908559	921185	0	-	0.391753	(0.39,0.42]	chr1	96904	22	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	46	2	2.44959	3.053595	3.6576	0.00167534	2.40332e-5	0.0164993	6.22273e-4
chr5	80628888	80628987	6667376	0	-	0.363636	(0.36,0.39]	chr5	514708	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	2.59525	3.053585	3.51192	2.00567e-4	1.03824e-5	0.00317675	3.10912e-4
chr1	226993288	226993386	1534705	0	-	0.357143	(0.33,0.36]	chr1	153615	36	UTR3	UTR3:EXON_MRNA	CDC42BPA	ENSG00000143776.19	ENST00000366766.7:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.7:ENST00000448940.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	1.97842	3.05341	4.1284	0.0469469	0.00407303	0.171977	0.0324137
chr3	100304845	100304888	3634593	0	+	0.348837	(0.33,0.36]	chr3	311540	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000344949.9:ENST00000486274.5:ENST00000475134.1:ENST00000496167.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	1.97842	3.05341	4.1284	0.0469469	0.00407303	0.171977	0.0324137
chr10	5794884	5794951	11352749	0	-	0.447761	(0.42,0.455]	chr10	865765	1	CDS	CDS:EXON_MRNA:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.15137	3.053375	3.95538	0.0123864	6.68846e-5	0.07101	0.00142352
chr11	119335022	119335122	12163897	0	+	0.46	(0.455,0.49]	chr11	938090	6	UTR5	UTR5:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.9967	3.05336	3.11002	0.00650423	1.15314e-4	0.0454205	0.0020426
chr15	59124877	59124961	14960002	0	+	0.464286	(0.455,0.49]	chr15	1175719	1	UTR3	UTR3:EXON_MRNA:INTRON	CCNB2:RP11-59H7.3	ENSG00000157456.8:ENSG00000259732.1	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559026.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	39	2	2.9967	3.05336	3.11002	0.00650423	1.15314e-4	0.0454205	0.0020426
chr2	96817127	96817220	1944062	0	+	0.774194	(0.59,1]	chr2	184222	9	CDS	CDS:EXON_MRNA	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.11894	3.053225	3.98751	0.0301044	0.0293157	0.129773	0.128478
chr3	50330480	50330580	4177619	0	-	0.63	(0.59,1]	chr3	351714	8	UTR3	UTR3:EXON_MRNA	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	29	2	2.11894	3.053225	3.98751	0.0301044	0.0293157	0.129773	0.128478
chr1	39309623	39309696	148196	0	+	0.438356	(0.42,0.455]	chr1	18277	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MACF1	ENSG00000127603.31	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000524432.5:ENST00000672812.1:ENST00000564288.5:ENST00000671089.1:ENST00000496804.5:ENST00000530262.5:ENST00000673706.1:ENST00000372925.6:ENST00000476350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.19674	3.052975	3.90921	0.0254904	0.0121657	0.117089	0.0701019
chr14	91458565	91458661	14764424	0	-	0.4375	(0.42,0.455]	chr14	1156042	12	UTR3	UTR3:EXON_MRNA	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000557382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.19674	3.052975	3.90921	0.0254904	0.0121657	0.117089	0.0701019
chr17	36495986	36496074	16521903	0	-	0.477273	(0.455,0.49]	chr17	1351831	5	UTR3	UTR3:EXON_MRNA	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000620567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.61558	3.052955	3.49033	0.00184897	7.92678e-4	0.0185736	0.00933379
chr9	83978372	83978452	10712985	0	-	0.5	(0.49,0.53]	chr9	810546	1	UTR5	UTR5:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	2.8681	3.052955	3.23781	0.00175299	5.17993e-5	0.0171299	0.00115752
chr3	150562600	150562660	3807736	0	+	0.466667	(0.455,0.49]	chr3	324991	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.08503	3.052715	4.0204	0.0158994	0.00736097	0.0856643	0.0490627
chr10	22535146	22535244	11411101	0	-	0.428571	(0.42,0.455]	chr10	869854	4	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.99666	3.0526999999999997	3.10874	0.00104775	5.40397e-4	0.0123035	0.00688813
chr10	74089272	74089349	11117343	0	+	0.493506	(0.49,0.53]	chr10	846233	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.49797	3.05225	3.60653	0.00843736	4.50981e-4	0.0546021	0.00605268
chr17	28326793	28326892	16175263	0	+	0.515152	(0.49,0.53]	chr17	1304982	1	UTR3	UTR3:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.49797	3.05225	3.60653	0.00843736	4.50981e-4	0.0546021	0.00605268
chr1	93360937	93361036	356110	0	+	0.272727	[0,0.29]	chr1	35144	4	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.79922	3.052175	4.30513	0.0223458	7.08235e-6	0.106042	2.0848e-4
chr16	69118201	69118297	15993724	0	-	0.552083	(0.53,0.59]	chr16	1284017	3	UTR3	UTR3:EXON_MRNA	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.0693	3.051915	4.03453	0.0160468	4.6e-5	0.0860154	9.56296e-4
chr14	102005887	102005981	14495386	0	+	0.425532	(0.42,0.455]	chr14	1133069	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000645114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.04415	3.051845	4.05954	0.0101476	0.00617886	0.0627153	0.0439741
chr3	56072103	56072179	3496252	0	+	0.552632	(0.53,0.59]	chr3	306139	1	EXON_SMALL	EXON_SMALL	RN7SKP45	ENSG00000200379.1	ENST00000363509.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	5	55	2	3.0459	3.051825	3.05775	6.94592e-4	1.68929e-4	0.00846751	0.00297945
chr12	56286594	56286645	13350004	0	-	0.54902	(0.53,0.59]	chr12	1051056	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CS:RP11-977G19.10	ENSG00000062485.19:ENSG00000144785.8	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5:ENST00000549318.5:ENST00000547423.5:ENST00000550996.1:ENST00000551155.1:ENST00000550700.1:ENST00000551441.5:ENST00000550044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	3.03385	3.0516199999999998	3.06939	6.54756e-4	1.81515e-4	0.00860229	0.00293332
chr2	187466741	187466838	3070167	0	-	0.28866000000000003	[0,0.29]	chr2	271827	27	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.51725	3.0514650000000003	3.58568	0.00319723	8.35785e-5	0.0267978	0.00171841
chr11	62559595	62559678	12409005	0	-	0.506024	(0.49,0.53]	chr11	960938	1	UTR3	UTR3:EXON_MRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	132	2	2.4234	3.051415	3.67943	1.51476e-4	4.6007e-8	0.00275508	2.86472e-6
chrX	3931590	3931686	18933109	0	-	0.447917	(0.42,0.455]	chrX	1613537	19	EXON_LNCRNA	EXON_LNCRNA	RP11-706O15.1	ENSG00000285756.2	ENST00000381105.2	lncRNA	lncRNA	lncRNA	lncRNA	3	29	2	2.47379	3.0511749999999997	3.62856	0.00996858	4.02604e-4	0.0621728	0.00549837
chrX	24068035	24068108	18616589	0	+	0.39726	(0.39,0.42]	chrX	1589824	2	CDS	CDS:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	2.71496	3.05117	3.38738	1.79773e-4	1.35138e-4	0.00290798	0.0025017
chr6	119179237	119179333	7919321	0	-	0.322917	(0.29,0.33]	chr6	606471	22	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	13	85	2	2.67192	3.0510650000000004	3.43021	2.43559e-4	1.55758e-7	0.00399705	8.19752e-6
chr1	32038551	32038619	125814	0	+	0.441176	(0.42,0.455]	chr1	15453	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	2.90616	3.05104	3.19592	0.00162359	1.3097e-6	0.0169915	5.02895e-5
chr12	8290528	8290627	12721124	0	+	0.59596	(0.59,1]	chr12	988348	120	INTRON	INTRON	RP11-90D4.7	ENSG00000286895.1	ENST00000669735.1	lncRNA	lncRNA	lncRNA	lncRNA	7	145	2	2.00297	3.050795	4.09862	0.0125191	4.65668e-7	0.0713905	2.07886e-5
chr9	101390660	101390755	10774672	0	-	0.4	(0.39,0.42]	chr9	815647	2	CDS	CDS:EXON_MRNA	MRPL50	ENSG00000136897.8	ENST00000374865.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.34349	3.05051	3.75753	0.0169272	2.04026e-4	0.0890655	0.00320361
chr20	35557193	35557249	17769479	0	+	0.571429	(0.53,0.59]	chr20	1501147	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000442139.5:ENST00000451605.1:ENST00000488935.5:ENST00000488384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	42	2	2.62668	3.0504350000000002	3.47419	0.00157636	8.75273e-4	0.015761	0.0106963
chr1	154945950	154946044	1305912	0	-	0.56383	(0.53,0.59]	chr1	131551	5	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.35511	3.050265	3.74542	0.0445399	2.30148e-4	0.172163	0.00352524
chr1	84645274	84645372	1131604	0	-	0.387755	(0.36,0.39]	chr1	112678	17	UTR3	UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	3.00115	3.0501750000000003	3.0992	0.0012486	5.86576e-4	0.0137762	0.00742331
chr2	171748283	171748382	2208080	0	+	0.353535	(0.33,0.36]	chr2	202113	5	UTR3	UTR3:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000508530.5:ENST00000409197.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	29	2	2.84841	3.0501199999999997	3.25183	0.0020676	3.87102e-4	0.0194849	0.00578322
chr19	8321495	8321530	17219819	0	+	0.771429	(0.59,1]	chr19	1417484	1	UTR5	UTR5:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	749	2	2.30081	3.050035	3.79926	1.02822e-4	3.17234e-9	0.00200138	2.87175e-7
chrX	16869134	16869220	18971938	0	-	0.372093	(0.36,0.39]	chrX	1615477	1	CDS	CDS:UTR5:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000468092.1:ENST00000493145.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.76749	3.04995	3.33241	0.00287858	0.00193631	0.0247002	0.0192272
chr1	236572410	236572482	1568420	0	-	0.388889	(0.36,0.39]	chr1	157046	1	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.32678	3.0499	3.77302	0.0193538	0.0162599	0.0943643	0.0866586
chr16	11873118	11873171	15856878	0	-	0.377358	(0.36,0.39]	chr16	1266840	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.32678	3.0499	3.77302	0.0193538	0.0162599	0.0943643	0.0866586
chr19	808689	808762	17189559	0	+	0.589041	(0.53,0.59]	chr19	1411045	3	CDS	CDS:UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	202	2	2.72358	3.04978	3.37598	1.35411e-5	6.38902e-8	3.87872e-4	3.80702e-6
chr16	173304	173383	15480733	0	+	0.696203	(0.59,1]	chr16	1224196	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1:ENST00000484216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	378	2	2.69646	3.0497050000000003	3.40295	2.86204e-5	5.36875e-7	6.51985e-4	2.62558e-5
chr9	33624458	33624551	10236153	0	+	0.483871	(0.455,0.49]	chr9	769679	3	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	40	2	1.81931	3.04969	4.28007	0.0235519	8.3464e-6	0.108737	2.58924e-4
chr6	7250619	7250716	7031382	0	+	0.56701	(0.53,0.59]	chr6	538755	18	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7:ENST00000349384.10	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.8006	3.049675	3.29875	0.00233666	0.00191422	0.0221314	0.018324
chr6	43181313	43181409	7156138	0	+	0.53125	(0.53,0.59]	chr6	552710	23	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	4	46	2	1.78041	3.0496749999999997	4.31894	0.0407112	7.82085e-6	0.163285	2.24148e-4
chr6	52264675	52264763	7736587	0	-	0.545455	(0.53,0.59]	chr6	593678	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.56002	3.0496600000000003	3.5393	0.00634904	6.46017e-4	0.0446708	0.00799743
chr5	53886269	53886366	6575917	0	-	0.391753	(0.39,0.42]	chr5	509078	25	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	2.38186	3.049625	3.71739	0.00601449	1.41698e-5	0.0434483	3.66245e-4
chr12	110429559	110429658	13537379	0	-	0.636364	(0.59,1]	chr12	1064862	260	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	7	127	2	2.88849	3.04923	3.20997	6.26999e-4	3.84488e-5	0.00831935	8.33226e-4
chr17	63579824	63579883	16317448	0	+	0.542373	(0.53,0.59]	chr17	1323651	1	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.78899	3.04921	3.30943	0.00245784	0.0018255	0.0221765	0.0183913
chr1	95196419	95196518	362151	0	+	0.414141	(0.39,0.42]	chr1	35683	47	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.49701	3.0491599999999996	3.60131	0.0339607	4.60576e-4	0.141431	0.00611208
chr10	59789242	59789341	11517191	0	-	0.474747	(0.455,0.49]	chr10	877718	6	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.96925	3.04884	3.12843	0.00698725	0.00392855	0.0473262	0.0322851
chr2	202295755	202295837	2315806	0	+	0.463415	(0.455,0.49]	chr2	209765	2	CDS	CDS:EXON_MRNA:INTRON	NOP58	ENSG00000055044.11	ENST00000264279.10:ENST00000433543.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.96925	3.04884	3.12843	0.00698725	0.00392855	0.0473262	0.0322851
chr16	176929	177029	15480745	0	+	0.62	(0.59,1]	chr16	1224205	1	CDS_START	CDS_START:CDS:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1:ENST00000487791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	94	1574	2	2.64634	3.048765	3.45119	3.30035e-6	1.63039e-8	1.09244e-4	1.29239e-6
chr14	102011874	102011953	14495454	0	+	0.556962	(0.53,0.59]	chr14	1133094	1	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	1.5389	3.04875	4.5586	0.0306924	0.00161229	0.130016	0.0169168
chr3	113809621	113809719	3676120	0	+	0.397959	(0.39,0.42]	chr3	314510	3	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8:ENST00000470455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	2.74243	3.048545	3.35466	0.00369167	1.40185e-4	0.030936	0.00236775
chr11	309272	309334	11756408	0	+	0.580645	(0.53,0.59]	chr11	897741	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM2:RP11-326C3.17	ENSG00000185201.17:ENSG00000288681.1	ENST00000616316.2:ENST00000399817.9:ENST00000680197.1:ENST00000680344.1:ENST00000681833.1:ENST00000680011.1:ENST00000680261.1:ENST00000602569.2:ENST00000527146.1:ENST00000399815.2:ENST00000679383.1:ENST00000681211.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	207	2	2.61129	3.04849	3.48569	1.68367e-5	3.92842e-8	4.65239e-4	2.50512e-6
chr9	128694953	128695049	10480929	0	+	0.479167	(0.455,0.49]	chr9	790686	4	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	19	153	2	2.77688	3.04849	3.3201	7.81122e-6	1.27727e-7	2.45051e-4	6.89809e-6
chr5	127552014	127552113	6205029	0	+	0.323232	(0.29,0.33]	chr5	483456	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2:ENST00000513427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	72	2	2.67643	3.04845	3.42047	1.8012e-4	1.2208e-5	0.003142	3.24581e-4
chr19	7963186	7963285	17447942	0	-	0.353535	(0.33,0.36]	chr19	1458189	17	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5:ENST00000596459.5	protein_coding	protein_coding	protein_coding	protein_coding	20	123	2	2.93374	3.048275	3.16281	1.41478e-6	6.3757e-7	5.34886e-5	3.02387e-5
chr6	30724201	30724297	7112220	0	+	0.604167	(0.59,1]	chr6	545065	10	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	684	2	2.83212	3.04824	3.26436	2.23977e-6	3.85902e-7	7.88671e-5	1.98925e-5
chr8	11809666	11809723	9201767	0	+	0.473684	(0.455,0.49]	chr8	703026	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531733.1:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	65	2	2.69169	3.048185	3.40468	0.00126948	4.0666e-6	0.0139061	1.30689e-4
chr2	70088036	70088133	1878481	0	+	0.649485	(0.59,1]	chr2	177396	3	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	7	115	2	2.53047	3.0480650000000002	3.56566	7.54387e-4	8.52606e-5	0.0090193	0.00174886
chr10	32919984	32920084	11444083	0	-	0.36	(0.33,0.36]	chr10	872648	2	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	69	2	2.20213	3.048035	3.89394	9.37319e-4	4.03939e-7	0.0112692	1.8458e-5
chr9	131174054	131174142	10496116	0	+	0.477273	(0.455,0.49]	chr9	793300	1	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	66	2	2.04425	3.047955	4.05166	0.00299809	1.27965e-6	0.0266635	4.92895e-5
chrX	153688755	153688836	18915557	0	+	0.62963	(0.59,1]	chrX	1611154	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000476466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	128	2	2.07515	3.04778	4.02041	0.00410056	6.56476e-6	0.0323346	2.13052e-4
chr3	96617850	96617947	4316746	0	-	0.381443	(0.36,0.39]	chr3	360010	7	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	74	518	2	2.20132	3.0477049999999997	3.89409	1.20049e-5	1.18117e-12	3.52389e-4	2.6098e-10
chr1	167553741	167553805	1347957	0	-	0.734375	(0.59,1]	chr1	138013	1	UTR5	UTR5:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.53147	3.047695	3.56392	0.00807544	8.86707e-4	0.0531324	0.0101815
chr19	40616888	40616954	17330402	0	+	0.530303	(0.53,0.59]	chr19	1436028	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000612121.4:ENST00000600499.5:ENST00000610893.4:ENST00000612845.4:ENST00000599724.5:ENST00000597071.5:ENST00000595118.5:ENST00000602251.5:ENST00000622565.4:ENST00000593463.5:ENST00000618486.4:ENST00000318809.11:ENST00000597816.5:ENST00000601464.5:ENST00000596351.5:ENST00000622107.4:ENST00000617753.4:ENST00000594448.5:ENST00000595665.1:ENST00000622457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	1.61377	3.04764	4.48151	0.0436338	2.61211e-6	0.170594	8.99269e-5
chr17	78117801	78117868	16693090	0	-	0.671642	(0.59,1]	chr17	1375211	1	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	173	2	2.58138	3.047605	3.51383	1.11838e-4	9.14703e-5	0.00213742	0.00168599
chr8	47893304	47893387	9816733	0	-	0.457831	(0.455,0.49]	chr8	742767	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	3.02426	3.0476	3.07094	4.58804e-5	5.1248e-6	0.00105728	1.58408e-4
chr6	83181833	83181931	7817351	0	-	0.459184	(0.455,0.49]	chr6	598748	2	CDS	CDS:EXON_MRNA	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000510258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	2.07467	3.047535	4.0204	0.00905778	0.00736097	0.0574177	0.0490627
chr7	140696744	140696842	8569854	0	+	0.632653	(0.59,1]	chr7	653975	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000465506.5:ENST00000247866.9:ENST00000464564.6:ENST00000476181.5:ENST00000464566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.83139	3.047465	4.26354	0.0225	0.0134233	0.106723	0.0743429
chr1	109582436	109582500	399236	0	+	0.34375	(0.33,0.36]	chr1	38881	1	CDS	CDS:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.62574	3.04741	3.46908	0.00176861	0.00114872	0.0172426	0.0130528
chr19	11129596	11129670	17230284	0	+	0.567568	(0.53,0.59]	chr19	1419633	3	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	96	2	2.00715	3.04733	4.08751	0.00467412	1.04565e-7	0.0361967	5.7906e-6
chr7	6403586	6403681	8114074	0	+	0.315789	(0.29,0.33]	chr7	620430	13	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	14	83	2	2.6509	3.04731	3.44372	9.33798e-5	3.29219e-7	0.00186503	1.55344e-5
chrX	154353640	154353727	19278012	0	-	0.597701	(0.59,1]	chrX	1638269	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000438732.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.97802	3.047245	3.11647	0.00535979	0.00133365	0.0406564	0.0139317
chr1	10380148	10380245	39646	0	+	0.340206	(0.33,0.36]	chr1	4755	19	UTR3	UTR3:EXON_MRNA	KIF1B	ENSG00000054523.19	ENST00000676179.1:ENST00000377086.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr1	45697141	45697236	979356	0	-	0.357895	(0.33,0.36]	chr1	103272	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	IPP	ENSG00000197429.11	ENST00000359942.8:ENST00000495072.1:ENST00000461718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr11	68537664	68537764	12000276	0	+	0.36	(0.33,0.36]	chr11	923711	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5:ENST00000531244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr12	53475406	53475501	12886697	0	+	0.347368	(0.33,0.36]	chr12	1002477	3	UTR3	UTR3:EXON_MRNA:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr16	46658596	46658695	15927099	0	-	0.343434	(0.33,0.36]	chr16	1277396	26	UTR3	UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr16	89349793	89349892	16077814	0	-	0.333333	(0.33,0.36]	chr16	1292197	61	INTRON	INTRON	ANKRD11:GS2-740I5.1	ENSG00000167522.16:ENSG00000288715.1	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000683497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr17	67983493	67983591	16333720	0	+	0.346939	(0.33,0.36]	chr17	1325101	13	UTR3	UTR3:EXON_MRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr20	45079823	45079922	17800847	0	+	0.333333	(0.33,0.36]	chr20	1504894	48	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr3	57559320	57559420	3497973	0	+	0.36	(0.33,0.36]	chr3	306448	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDE12	ENSG00000174840.9	ENST00000311180.9:ENST00000487257.1	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr6	2279106	2279205	7012227	0	+	0.343434	(0.33,0.36]	chr6	537651	53	INTRON	INTRON	GMDS-DT	ENSG00000250903.9	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000664738.1:ENST00000532124.6:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000532564.7:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr9	2812290	2812362	10527183	0	-	0.347222	(0.33,0.36]	chr9	798629	2	CDS	CDS:EXON_MRNA	PUM3	ENSG00000080608.10	ENST00000397885.3	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.51887	3.04723	3.57559	0.0358636	0.0262108	0.147298	0.117079
chr6	149727133	149727198	8018884	0	-	0.4	(0.39,0.42]	chr6	612718	2	CDS	CDS:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.13033	3.047215	3.9641	0.00865856	6.346e-5	0.0557159	0.00124725
chr12	8941817	8941917	13197233	0	-	0.49	(0.455,0.49]	chr12	1033917	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1:ENST00000543704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	74	2	2.92384	3.0472	3.17056	4.1243e-4	1.10744e-5	0.00604953	2.99904e-4
chr8	97851570	97851666	9507216	0	+	0.291667	(0.29,0.33]	chr8	722769	2	UTR3	UTR3:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	2.33272	3.0470800000000002	3.76144	0.00296866	1.09291e-5	0.0264052	2.96269e-4
chr5	87328289	87328389	6680714	0	-	0.28	[0,0.29]	chr5	515349	90	INTRON	INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	16	2	2.82443	3.04702	3.26961	0.0180803	0.00229774	0.0920398	0.0210664
chr6	26031749	26031819	7646927	0	-	0.614286	(0.59,1]	chr6	582488	1	CDS	CDS:EXON_MRNA	H3C2	ENSG00000286522.2	ENST00000621411.3	protein_coding	protein_coding	protein_coding	protein_coding	41	670	2	2.84762	3.046995	3.24637	2.14776e-6	4.38915e-7	7.60262e-5	2.20591e-5
chr19	6379925	6380014	17442008	0	-	0.561798	(0.53,0.59]	chr19	1456697	5	UTR3	UTR3:EXON_MRNA	GTF2F1	ENSG00000125651.14	ENST00000394456.10:ENST00000593678.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	1.90953	3.04663	4.18373	0.0517711	1.85867e-5	0.193577	4.56627e-4
chr1	145993661	145993755	1270248	0	-	0.553191	(0.53,0.59]	chr1	125527	14	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6:ENST00000488537.1:ENST00000486597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	95	2	2.10304	3.04633	3.98962	8.37015e-4	2.29235e-6	0.00981083	8.86852e-5
chr1	182387130	182387211	1401252	0	-	0.493827	(0.49,0.53]	chr1	141700	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	129	2	2.15498	3.04627	3.93756	6.12886e-4	1.29394e-8	0.00819403	9.68114e-7
chr20	38091965	38092065	17782076	0	+	0.3	(0.29,0.33]	chr20	1502505	22	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000373433.9:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.77585	3.04619	3.31653	0.0143131	0.00261621	0.0780602	0.0238929
chr8	140520254	140520354	10132045	0	-	0.32	(0.29,0.33]	chr8	760954	2	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.77585	3.04619	3.31653	0.0143131	0.00261621	0.0780602	0.0238929
chr12	56601729	56601822	13351715	0	-	0.548387	(0.53,0.59]	chr12	1051625	3	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.65894	3.0461799999999997	3.43342	0.0193255	8.93729e-5	0.0943643	0.00165837
chr7	141743901	141743989	8575598	0	+	0.454545	(0.42,0.455]	chr7	654298	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	103	2	2.88312	3.04615	3.20918	8.68228e-6	6.08017e-6	2.45072e-4	1.99809e-4
chr6	85677390	85677489	7826453	0	-	0.444444	(0.42,0.455]	chr6	599650	49	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000624295.3:ENST00000658871.1:ENST00000453754.5:ENST00000625175.3:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000623267.3:ENST00000425170.2:ENST00000433843.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	9	92	2	2.3277	3.04608	3.76446	0.00333145	6.08943e-8	0.0286606	3.6541e-6
chr12	54235068	54235168	13342877	0	-	0.37	(0.36,0.39]	chr12	1049602	37	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.05966	3.04593	4.0322	0.0366015	0.00588589	0.145024	0.0427941
chr15	40621129	40621227	14883029	0	+	0.377551	(0.36,0.39]	chr15	1168748	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KNL1	ENSG00000137812.20	ENST00000346991.9:ENST00000614337.4:ENST00000399668.7:ENST00000527044.5:ENST00000533001.1:ENST00000534204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.05966	3.04593	4.0322	0.0366015	0.00588589	0.145024	0.0427941
chr15	52551334	52551434	15287501	0	-	0.38	(0.36,0.39]	chr15	1206631	44	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000568196.1:ENST00000563277.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.05966	3.04593	4.0322	0.0366015	0.00588589	0.145024	0.0427941
chr5	55343330	55343392	5973339	0	+	0.370968	(0.36,0.39]	chr5	468297	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5:ENST00000502953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.05966	3.04593	4.0322	0.0366015	0.00588589	0.145024	0.0427941
chr17	47223013	47223042	16248607	0	+	0.482759	(0.455,0.49]	chr17	1316212	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000536623.6:ENST00000573747.6:ENST00000393450.5:ENST00000570671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	2.69169	3.04589	3.40009	0.00126948	0.00120619	0.0139061	0.0129255
chr8	47943287	47943366	9817262	0	-	0.493671	(0.49,0.53]	chr8	742889	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.92082	3.04534	3.16986	0.00827037	3.95698e-4	0.0534766	0.00587341
chr1	229441612	229441709	1541815	0	-	0.484536	(0.455,0.49]	chr1	154359	15	UTR3	UTR3:EXON_MRNA	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.69053	3.0453099999999997	3.40009	0.0182983	0.00120619	0.0925808	0.0129255
chr12	96018762	96018832	13485153	0	-	0.485714	(0.455,0.49]	chr12	1060526	1	CDS	CDS:UTR3:EXON_MRNA	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.69053	3.0453099999999997	3.40009	0.0182983	0.00120619	0.0925808	0.0129255
chr14	91458469	91458565	14764423	0	-	0.479167	(0.455,0.49]	chr14	1156042	11	UTR3	UTR3:EXON_MRNA	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000557382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.69053	3.0453099999999997	3.40009	0.0182983	0.00120619	0.0925808	0.0129255
chr16	58523369	58523435	15966249	0	-	0.484848	(0.455,0.49]	chr16	1281057	1	CDS	CDS:UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000569924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.69053	3.0453099999999997	3.40009	0.0182983	0.00120619	0.0925808	0.0129255
chr4	73075343	73075442	5465957	0	-	0.373737	(0.36,0.39]	chr4	437721	21	UTR3	UTR3:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.62565	3.0453099999999997	3.46497	0.0219469	0.00105709	0.103959	0.0123035
chr12	56300159	56300201	13350145	0	-	0.595238	(0.59,1]	chr12	1051082	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	CS:RP11-977G19.10	ENSG00000062485.19:ENSG00000144785.8	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000552688.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5:ENST00000549318.5:ENST00000547423.5:ENST00000550996.1:ENST00000550700.1:ENST00000551441.5:ENST00000550044.1:ENST00000548360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.74555	3.04521	4.34487	0.0444308	0.0123678	0.165174	0.0705839
chr6	30704512	30704611	7659042	0	-	0.626263	(0.59,1]	chr6	584223	10	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.74555	3.04521	4.34487	0.0444308	0.0123678	0.165174	0.0705839
chr11	32593865	32593953	11898222	0	+	0.488636	(0.455,0.49]	chr11	908913	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	2.76399	3.04518	3.32637	8.75629e-4	1.64563e-4	0.0106963	0.00269001
chr1	235128715	235128776	1560268	0	-	0.688525	(0.59,1]	chr1	156046	1	UTR5	UTR5:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	9	165	2	1.90312	3.045115	4.18711	0.00874827	2.53036e-7	0.0560016	1.2418e-5
chr6	170398569	170398669	7556166	0	+	0.45	(0.42,0.455]	chr6	576907	26	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.66697	3.045035	3.4231	0.0190326	0.00112541	0.0958835	0.0128481
chr3	33389033	33389133	4112717	0	-	0.46	(0.455,0.49]	chr3	343607	8	UTR3	UTR3:EXON_MRNA	UBP1	ENSG00000153560.12	ENST00000283629.8:ENST00000492136.1:ENST00000447368.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	65	2	2.14938	3.044995	3.94061	0.00173437	2.93826e-6	0.0178983	9.91141e-5
chr16	20770134	20770193	15582727	0	+	0.457627	(0.455,0.49]	chr16	1234738	1	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000561584.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.84079	3.04496	3.24913	0.00239443	0.00201021	0.0225356	0.0190112
chr17	46105885	46105985	16566256	0	-	0.53	(0.49,0.53]	chr17	1360748	108	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.48488	3.04482	3.60476	0.032052	4.52633e-4	0.133433	0.00642319
chr1	206732913	206733011	683404	0	+	0.377551	(0.36,0.39]	chr1	69024	3	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.88762	3.0448	3.20198	4.4092e-4	4.35345e-4	0.0062930699999999996	0.005869
chr3	49013737	49013834	3459278	0	+	0.546392	(0.53,0.59]	chr3	301931	21	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.27113	3.04476	3.81839	0.0184435	0.0178853	0.0945306	0.0918323
chr3	4981453	4981515	3277622	0	+	0.435484	(0.42,0.455]	chr3	288713	2	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1:ENST00000460806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	33	2	1.40915	3.04448	4.67981	0.0332782	5.38444e-4	0.137922	0.00744072
chr12	103942534	103942552	13056868	0	+	0.388889	(0.36,0.39]	chr12	1017344	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2:ENST00000551983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	126	2	2.55738	3.044375	3.53137	0.0013225	8.83536e-9	0.0144203	6.97398e-7
chr10	79314105	79314158	11148589	0	+	0.584906	(0.53,0.59]	chr10	847410	2	CDS	CDS:UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.77921	3.04432	3.30943	0.0132865	0.0018255	0.0740932	0.0183913
chr10	79512749	79512837	11148976	0	+	0.534091	(0.53,0.59]	chr10	847457	1	CDS	CDS:EXON_MRNA	EIF5AL1	ENSG00000253626.4	ENST00000520547.4	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.77921	3.04432	3.30943	0.0132865	0.0018255	0.0740932	0.0183913
chr15	72379610	72379710	15369785	0	-	0.57	(0.53,0.59]	chr15	1214499	5	EXON_PSEUDO	EXON_PSEUDO	RPL12P35	ENSG00000243007.1	ENST00000477007.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	27	2	2.77921	3.04432	3.30943	0.0132865	0.0018255	0.0740932	0.0183913
chr2	135866131	135866204	2898176	0	-	0.547945	(0.53,0.59]	chr2	258548	1	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.77921	3.04432	3.30943	0.0132865	0.0018255	0.0740932	0.0183913
chr3	184308507	184308567	3949102	0	+	0.583333	(0.53,0.59]	chr3	332359	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000473991.1:ENST00000491494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.77921	3.04432	3.30943	0.0132865	0.0018255	0.0740932	0.0183913
chr14	22926165	22926230	14527953	0	-	0.430769	(0.42,0.455]	chr14	1138161	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000216350.12:ENST00000553915.5:ENST00000553897.5:ENST00000555530.5:ENST00000556043.5:ENST00000553550.5:ENST00000554716.5:ENST00000553787.5:ENST00000553641.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	1.99701	3.0442799999999997	4.09155	0.0235036	2.98142e-5	0.111072	6.7355e-4
chr1	28280901	28281000	115649	0	+	0.555556	(0.53,0.59]	chr1	14152	2	UTR3	UTR3:EXON_MRNA	SESN2	ENSG00000130766.5	ENST00000253063.4	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.7898	3.044275	3.29875	0.0128364	0.00191422	0.0719798	0.018324
chr17	42306378	42306447	16228085	0	+	0.57971	(0.53,0.59]	chr17	1312830	3	CDS	CDS:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000468096.5:ENST00000591556.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.7898	3.044275	3.29875	0.0128364	0.00191422	0.0719798	0.018324
chr9	78308498	78308583	10320880	0	+	0.564706	(0.53,0.59]	chr9	777270	2	CDS	CDS:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.7898	3.044275	3.29875	0.0128364	0.00191422	0.0719798	0.018324
chr20	47291795	47291888	17993943	0	-	0.462366	(0.455,0.49]	chr20	1525029	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	2.83859	3.04418	3.24977	0.00215336	4.77546e-5	0.0208395	9.90649e-4
chrX	44923184	44923284	18678498	0	+	0.36	(0.33,0.36]	chrX	1592595	488	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.51887	3.04418	3.56949	0.0358636	5.48184e-4	0.147298	0.00697082
chr2	43973606	43973660	2623830	0	-	0.425926	(0.42,0.455]	chr2	236258	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000682999.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	2.91373	3.04411	3.17449	0.00892357	7.7054e-5	0.0567495	0.00146588
chr8	41655533	41655629	9806276	0	-	0.520833	(0.49,0.53]	chr8	741510	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000522543.5:ENST00000522231.5:ENST00000520299.5:ENST00000314214.12:ENST00000645531.1:ENST00000518715.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.56183	3.0441000000000003	3.52637	0.0261296	6.68602e-4	0.118976	0.00820018
chrX	48261765	48261815	18691101	0	+	0.5	(0.49,0.53]	chrX	1593870	1	CDS	CDS:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.56183	3.0441000000000003	3.52637	0.0261296	6.68602e-4	0.118976	0.00820018
chr21	29062127	29062185	18201998	0	-	0.396552	(0.39,0.42]	chr21	1544722	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2:ENST00000480359.1:ENST00000475205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	93	2	2.48357	3.04408	3.60459	0.00171404	8.3363e-8	0.017714	4.7764e-6
chr22	20551436	20551487	18298824	0	+	0.45098	(0.42,0.455]	chr22	1553447	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000420849.5:ENST00000487550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	31	2	2.91373	3.0440300000000002	3.17433	0.00892357	3.82052e-4	0.0567495	0.0052929
chr20	49149287	49149386	17999758	0	-	0.474747	(0.455,0.49]	chr20	1525611	130	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.35214	3.044015	3.73589	0.0455621	2.30579e-4	0.168044	0.00382267
chr17	7580154	7580240	16105713	0	+	0.581395	(0.53,0.59]	chr17	1296984	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584502.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	67	2	2.87264	3.04389	3.21514	0.00168899	1.71972e-5	0.0175515	4.33104e-4
chr17	63745923	63746019	16634658	0	-	0.427083	(0.42,0.455]	chr17	1367560	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-51F16.8:CCDC47	ENSG00000125695.12:ENSG00000108588.14	ENST00000580553.1:ENST00000225726.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.91373	3.04385	3.17397	0.00892357	0.0031821	0.0567495	0.0267094
chr2	171046267	171046362	3011200	0	-	0.431579	(0.42,0.455]	chr2	266826	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6:ENST00000413010.5:ENST00000478683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.91373	3.04385	3.17397	0.00892357	0.0031821	0.0567495	0.0267094
chr3	175609478	175609545	3914380	0	+	0.432836	(0.42,0.455]	chr3	329616	1	EXON_SMALL	EXON_SMALL:INTRON	NAALADL2:RNU4-91P	ENSG00000177694.16:ENSG00000201648.1	ENST00000454872.6:ENST00000489299.5:ENST00000364778.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:processed_transcript	2	22	2	2.91373	3.04385	3.17397	0.00892357	0.0031821	0.0567495	0.0267094
chr6	42888046	42888145	7153864	0	+	0.434343	(0.42,0.455]	chr6	552211	17	UTR3	UTR3:EXON_MRNA	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000304734.9	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.91373	3.04385	3.17397	0.00892357	0.0031821	0.0567495	0.0267094
chr7	75417263	75417359	8858922	0	-	0.4375	(0.42,0.455]	chr7	676960	6	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.91373	3.04385	3.17397	0.00892357	0.0031821	0.0567495	0.0267094
chrX	78015817	78015881	18746019	0	+	0.421875	(0.42,0.455]	chrX	1599725	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP7A:PGK1	ENSG00000165240.21:ENSG00000102144.15	ENST00000343533.9:ENST00000341514.11:ENST00000644362.1:ENST00000645094.1:ENST00000682475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.91373	3.04385	3.17397	0.00892357	0.0031821	0.0567495	0.0267094
chr3	51993940	51994033	4181346	0	-	0.569892	(0.53,0.59]	chr3	352460	2	CDS	CDS:UTR3:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5:ENST00000492277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	83	2	3.03277	3.043785	3.0548	5.76577e-5	5.01853e-5	0.00127765	0.00103096
chr4	144019287	144019380	5696528	0	-	0.451613	(0.42,0.455]	chr4	451523	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GYPB	ENSG00000250361.9	ENST00000502664.6:ENST00000506679.5:ENST00000429670.3:ENST00000507009.5:ENST00000513128.5:ENST00000505583.5:ENST00000506516.6:ENST00000513557.5:ENST00000513677.5:ENST00000511198.5:ENST00000504951.6:ENST00000510196.6:ENST00000503255.5:ENST00000508618.5:ENST00000508841.1:ENST00000642935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	2.84905	3.04372	3.23839	2.92986e-4	7.5591e-5	0.00464297	0.00143985
chr1	154263152	154263240	480080	0	+	0.477273	(0.455,0.49]	chr1	49725	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000475373.1:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	2.43664	3.043715	3.65079	0.00394058	3.61776e-4	0.0315828	0.00544764
chr9	112297865	112297916	10803679	0	-	0.470588	(0.455,0.49]	chr9	818492	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	1.96875	3.0436550000000002	4.1185600000000004	0.0480352	2.49433e-5	0.180552	5.8178e-4
chr10	70217871	70217931	11560768	0	-	0.35	(0.33,0.36]	chr10	879663	2	CDS	CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.7655	3.043535	3.32157	0.0175892	1.77615e-4	0.0918323	0.00287736
chr8	140531243	140531343	10132155	0	-	0.3	(0.29,0.33]	chr8	760954	112	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.80161	3.04353	3.28545	0.00415667	4.11768e-5	0.0325842	8.82748e-4
chr1	148171259	148171359	457140	0	+	0.46	(0.455,0.49]	chr1	45544	68	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	2	22	2	2.83792	3.043525	3.24913	0.0110512	0.00239443	0.0665375	0.0225356
chr21	45493500	45493575	18145746	0	+	0.68	(0.59,1]	chr21	1539793	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	101	2	2.91088	3.04352	3.17616	0.00434232	9.93837e-5	0.0339139	0.00179775
chr1	26781044	26781141	111023	0	+	0.360825	(0.36,0.39]	chr1	13356	4	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000636219.1:ENST00000466382.2:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	3.02397	3.043445	3.06292	0.00674398	0.00499846	0.0461258	0.0370021
chr16	24956471	24956568	15897068	0	-	0.371134	(0.36,0.39]	chr16	1272609	19	EXON_MRNA	EXON_MRNA:INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000572314.5:ENST00000575656.5:ENST00000575975.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	3.02397	3.043445	3.06292	0.00674398	0.00499846	0.0461258	0.0370021
chr2	44338350	44338443	2624327	0	-	0.387097	(0.36,0.39]	chr2	236359	1	CDS	CDS:EXON_MRNA:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	3.02397	3.043445	3.06292	0.00674398	0.00499846	0.0461258	0.0370021
chr7	112772871	112772963	9013371	0	-	0.380435	(0.36,0.39]	chr7	688829	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM168	ENSG00000146802.13	ENST00000312814.11:ENST00000454074.5:ENST00000447395.5:ENST00000418785.5:ENST00000449743.1:ENST00000441474.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	3.02397	3.043445	3.06292	0.00674398	0.00499846	0.0461258	0.0370021
chr5	141515597	141515694	6875028	0	-	0.42268	(0.42,0.455]	chr5	526351	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	19	2	1.99701	3.043405	4.0898	0.0235036	0.00698074	0.111072	0.0473262
chr1	51798248	51798329	1016377	0	-	0.493827	(0.49,0.53]	chr1	105216	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000497358.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.13501	3.043305	3.9516	0.0287874	6.96459e-5	0.128869	0.0013446
chr5	113015463	113015562	6153913	0	+	0.353535	(0.33,0.36]	chr5	480731	21	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.93884	3.04328	3.14772	0.00135211	6.79194e-4	0.0140654	0.00876781
chr1	26781718	26781815	111030	0	+	0.484536	(0.455,0.49]	chr1	13356	11	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.9967	3.043155	3.08961	0.00650423	0.00445157	0.0454205	0.0340751
chr20	3805541	3805637	17658710	0	+	0.479167	(0.455,0.49]	chr20	1492996	7	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.9967	3.043155	3.08961	0.00650423	0.00445157	0.0454205	0.0340751
chr1	54043372	54043422	1027294	0	-	0.36	(0.33,0.36]	chr1	106627	1	CDS	CDS:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5	protein_coding	protein_coding	protein_coding	protein_coding	15	84	2	2.56075	3.04311	3.52547	7.60232e-5	1.63494e-5	0.00159574	4.13993e-4
chr11	9588502	9588602	11793796	0	+	0.46	(0.455,0.49]	chr11	903117	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000530175.5:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	1.72305	3.0430599999999997	4.36307	0.0324537	0.00218641	0.134899	0.0208941
chr2	218280025	218280124	3186706	0	-	0.555556	(0.53,0.59]	chr2	279944	1	CDS	CDS:UTR5:EXON_MRNA:PRIMIRNA	TMBIM1:MIR6513	ENSG00000135926.15:ENSG00000284173.1	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5:ENST00000492966.5:ENST00000466012.5:ENST00000429501.5:ENST00000425694.5:ENST00000495113.5:ENST00000418569.5:ENST00000440422.5:ENST00000444183.5:ENST00000621188.1:ENST00000453776.5:ENST00000444000.5:ENST00000453281.5:ENST00000451181.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	37	2	2.16037	3.04305	3.92573	0.0254312	8.62301e-5	0.117089	0.00160749
chr8	127740591	127740680	9612676	0	+	0.539326	(0.53,0.59]	chr8	728498	3	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	9	96	2	2.76647	3.0428949999999997	3.31932	2.92577e-4	2.84671e-6	0.00464297	9.64791e-5
chr2	219216741	219216832	3191237	0	-	0.615385	(0.59,1]	chr2	280835	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	94	2	2.34108	3.042775	3.74447	0.00648714	2.8028e-5	0.0454205	6.41211e-4
chr12	119676536	119676603	13114475	0	+	0.597015	(0.59,1]	chr12	1023550	1	CDS	CDS:EXON_MRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000545223.1:ENST00000545870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	45	2	2.5215	3.04271	3.56392	0.032241	8.86707e-4	0.135671	0.0101815
chr1	201970109	201970201	661854	0	+	0.315217	(0.29,0.33]	chr1	66404	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000482943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.63813	3.04255	3.44697	0.00803229	0.00101442	0.0528968	0.0112862
chr1	226379572	226379641	1533212	0	-	0.376812	(0.36,0.39]	chr1	153468	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	2.48922	3.042475	3.59573	0.0110399	3.19976e-5	0.0652374	7.1032e-4
chr2	96284357	96284433	2790361	0	-	0.565789	(0.53,0.59]	chr2	248732	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	2.8006	3.0424100000000003	3.28422	0.00233666	2.10061e-4	0.0221314	0.00327655
chr5	134157632	134157732	6843696	0	-	0.34	(0.33,0.36]	chr5	523620	88	UTR3	UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.63456	3.04235	3.45014	0.00707461	8.23333e-5	0.0478528	0.00155613
chr1	28536261	28536321	117401	0	+	0.466667	(0.455,0.49]	chr1	14364	1	CDS	CDS:EXON_MRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000683442.1:ENST00000373833.10:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000430407.1:ENST00000478232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.50904	3.042145	3.57525	0.0310515	5.24878e-4	0.131262	0.00677371
chr2	86173649	86173705	2773095	0	-	0.482143	(0.455,0.49]	chr2	246378	1	CDS	CDS:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.50904	3.042145	3.57525	0.0310515	5.24878e-4	0.131262	0.00677371
chr1	167383856	167383951	522593	0	+	0.547368	(0.53,0.59]	chr1	56095	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000420254.7:ENST00000470928.3:ENST00000443275.2:ENST00000490100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	3.00674	3.0421300000000002	3.07752	8.9408e-4	1.40512e-4	0.01086	0.00237235
chr7	76328980	76329079	8863405	0	-	0.383838	(0.36,0.39]	chr7	677476	23	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	17	107	2	2.32125	3.0420100000000003	3.76277	1.55591e-4	5.57489e-8	0.00281619	3.38375e-6
chr10	73051052	73051150	11568677	0	-	0.459184	(0.455,0.49]	chr10	880487	1	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	17	175	2	2.53963	3.0419099999999997	3.54419	0.00112063	2.37672e-9	0.0128408	2.23872e-7
chr18	9122596	9122681	16751007	0	+	0.458824	(0.455,0.49]	chr18	1381364	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFV2:RP11-21J18.1	ENSG00000178127.13:ENSG00000265257.5	ENST00000318388.11:ENST00000578850.1:ENST00000579126.5:ENST00000400033.1:ENST00000465096.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	14	118	2	2.9113	3.04186	3.17242	5.20678e-5	4.74801e-7	0.00116291	2.1118e-5
chr7	44801422	44801521	8261668	0	+	0.454545	(0.42,0.455]	chr7	629477	1	UTR3	UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	219	2	2.78849	3.04185	3.29521	1.06725e-6	3.19254e-8	4.22736e-5	2.31219e-6
chr1	10417051	10417117	39883	0	+	0.469697	(0.455,0.49]	chr1	4820	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000498356.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	2.95526	3.041845	3.12843	0.00392855	2.88167e-4	0.0322851	0.00423739
chr1	37709332	37709429	142754	0	+	0.57732000000000006	(0.53,0.59]	chr1	17845	11	UTR3	UTR3:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.2596	3.041835	3.82407	0.0185443	0.0179666	0.0948733	0.0918323
chr15	77052776	77052852	15388203	0	-	0.578947	(0.53,0.59]	chr15	1216660	1	CDS	CDS:UTR5:EXON_MRNA	TSPAN3	ENSG00000140391.15	ENST00000267970.9:ENST00000346495.6:ENST00000424443.7:ENST00000560715.5:ENST00000561277.5:ENST00000559494.1:ENST00000558745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.2596	3.041835	3.82407	0.0185443	0.0179666	0.0948733	0.0918323
chr12	111457286	111457359	13539889	0	-	0.589041	(0.53,0.59]	chr12	1065252	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000468920.2:ENST00000643474.1:ENST00000643694.1:ENST00000551551.1:ENST00000550889.5:ENST00000645162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	77	2	2.75178	3.041745	3.33171	8.47358e-4	7.58734e-6	0.0104407	2.19184e-4
chr11	107791276	107791372	12584844	0	-	0.3125	(0.29,0.33]	chr11	975961	4	UTR3	UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.48886	3.041635	3.59441	0.0055888	3.40774e-5	0.0419759	7.50473e-4
chr1	162587571	162587668	507826	0	+	0.463918	(0.455,0.49]	chr1	54799	2	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1:ENST00000474728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	3.0141	3.04162	3.06914	9.3076e-4	6.6649e-4	0.0111917	0.00820018
chr22	42599697	42599793	18524161	0	-	0.4375	(0.42,0.455]	chr22	1581915	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	POLDIP3	ENSG00000100227.18	ENST00000348657.6:ENST00000252115.10:ENST00000445215.5:ENST00000451060.6:ENST00000617178.4:ENST00000339677.10:ENST00000491021.1:ENST00000454057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	1.84101	3.0411699999999997	4.24133	0.0352234	0.00326918	0.142054	0.0282494
chr15	61853471	61853569	15329501	0	-	0.336735	(0.33,0.36]	chr15	1209317	12	UTR3	UTR3:EXON_MRNA	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000560637.5:ENST00000650094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	2.57153	3.04095	3.51037	0.00330025	5.65559e-5	0.028478	0.00114087
chr1	160997089	160997188	1331409	0	-	0.494949	(0.49,0.53]	chr1	136426	20	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	2.74861	3.040925	3.33324	0.00162947	1.43966e-4	0.0169972	0.00242438
chr1	181089394	181089492	587425	0	+	0.795918	(0.59,1]	chr1	60874	5	CDS	CDS:EXON_MRNA	IER5	ENSG00000162783.11	ENST00000367577.7	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.36593	3.040795	3.71566	0.0487443	0.0141097	0.175495	0.077233
chr1	185227303	185227402	1410523	0	-	0.484848	(0.455,0.49]	chr1	142581	6	EXON_PSEUDO	EXON_PSEUDO	RPL5P5	ENSG00000213051.3	ENST00000392009.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	47	2	2.11687	3.040755	3.96464	0.0028711	6.27408e-5	0.0246888	0.00135074
chr1	21824305	21824376	890613	0	-	0.619718	(0.59,1]	chr1	92208	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	141	2	3.00033	3.04068	3.08103	2.20237e-4	6.82964e-5	0.0034006	0.00145061
chr1	224418337	224418416	1526736	0	-	0.556962	(0.53,0.59]	chr1	152668	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.47	3.040665	3.61133	0.0089333	4.55298e-4	0.0567495	0.00608573
chr20	353535	353635	17644172	0	+	0.58	(0.53,0.59]	chr20	1491322	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NRSN2	ENSG00000125841.13	ENST00000492242.5:ENST00000382291.7:ENST00000382285.7:ENST00000608467.5:ENST00000608736.1:ENST00000621012.1:ENST00000608875.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.47	3.040665	3.61133	0.0089333	4.55298e-4	0.0567495	0.00608573
chr14	20472307	20472392	14171330	0	+	0.411765	(0.39,0.42]	chr14	1109138	1	CDS	CDS:UTR5:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000553418.5:ENST00000361505.10:ENST00000557229.5:ENST00000556293.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.91508	3.0406	3.16612	4.41174e-4	4.03393e-4	0.0062930699999999996	0.00550292
chr1	155172830	155172892	1306469	0	-	0.677419	(0.59,1]	chr1	131779	1	CDS	CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KRTCAP2:RP11-201K10.3	ENSG00000163463.13:ENSG00000273088.2	ENST00000491084.5:ENST00000295682.6:ENST00000497317.5:ENST00000487350.5:ENST00000473363.3:ENST00000490672.2:ENST00000482246.5:ENST00000471891.5:ENST00000461136.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.84748	3.04048	3.23348	0.0124539	0.00352837	0.0712518	0.0298518
chr7	128865478	128865578	8522609	0	+	0.63	(0.59,1]	chr7	650499	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	2.67664	3.040425	3.40421	6.8436e-4	1.95627e-4	0.00836671	0.00334517
chr19	41341956	41342030	17568601	0	-	0.621622	(0.59,1]	chr19	1476891	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1:ENST00000597453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	68	2	2.3821	3.04035	3.6986	0.00554753	4.89626e-4	0.0417049	0.00639399
chr12	112508120	112508220	13095561	0	+	0.33	(0.29,0.33]	chr12	1021682	24	UTR3	UTR3:EXON_MRNA	PTPN11	ENSG00000179295.18	ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.7441	3.04034	3.33658	0.00173745	1.69227e-4	0.0179204	0.00275464
chr19	3052999	3053090	17426911	0	-	0.318681	(0.29,0.33]	chr19	1453929	2	UTR3	UTR3:EXON_MRNA	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000592414.1:ENST00000586742.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	39	2	2.19859	3.04033	3.88207	0.00139265	1.56259e-4	0.0143949	0.00282486
chr18	35141144	35141241	16822725	0	+	0.556701	(0.53,0.59]	chr18	1387343	9	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.86102	3.040215	3.21941	0.00266171	0.0017805	0.0240332	0.0172974
chr12	48693132	48693225	13321378	0	-	0.516129	(0.49,0.53]	chr12	1044936	1	CDS	CDS:UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.8671	3.0401350000000003	3.21317	0.0100489	3.08783e-4	0.0623334	0.00445935
chr22	21799069	21799128	18442750	0	-	0.542373	(0.53,0.59]	chr22	1572537	2	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	7	82	2	2.15051	3.040075	3.92964	0.00631495	3.76982e-7	0.0446309	1.73504e-5
chr10	68645851	68645947	11090653	0	+	0.395833	(0.39,0.42]	chr10	842885	13	CDS	CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.18155	3.0400150000000004	3.89848	0.0283931	9.30194e-5	0.127654	0.00169783
chr5	10279466	10279565	6446886	0	-	0.393939	(0.39,0.42]	chr5	502163	20	UTR3	UTR3:EXON_MRNA:INTRON	CMBL	ENSG00000164237.9	ENST00000503834.1:ENST00000296658.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.18155	3.0400150000000004	3.89848	0.0283931	9.30194e-5	0.127654	0.00169783
chr11	59574496	59574595	12400591	0	-	0.414141	(0.39,0.42]	chr11	959394	2	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	3.02517	3.0398899999999998	3.05461	8.55091e-4	8.3811e-4	0.0105173	0.00981548
chr3	139366636	139366705	4479558	0	-	0.492754	(0.49,0.53]	chr3	372221	2	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	55	2	2.49797	3.0398899999999998	3.58181	0.00843736	4.83779e-6	0.0546021	1.51238e-4
chr15	57995077	57995139	15305519	0	-	0.419355	(0.39,0.42]	chr15	1208134	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000560923.5:ENST00000559266.5:ENST00000561070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	51	2	2.67296	3.039715	3.40647	0.00159022	1.67145e-5	0.0168452	4.22716e-4
chr10	63213768	63213867	11531879	0	-	0.444444	(0.42,0.455]	chr10	878549	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JMJD1C	ENSG00000171988.19	ENST00000639129.1:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.70611	3.0397	3.37329	0.00397496	0.00136107	0.0322851	0.0141115
chr15	64682486	64682586	14978098	0	+	0.57	(0.53,0.59]	chr15	1177327	9	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	1.64067	3.03965	4.43863	0.0285853	0.00254763	0.125848	0.0233955
chr19	10316784	10316879	17459297	0	-	0.705263	(0.59,1]	chr19	1460720	7	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	108	2	2.9981	3.039565	3.08103	3.68402e-4	2.20237e-4	0.00553314	0.0034006
chr11	2377549	2377615	11764770	0	+	0.515152	(0.49,0.53]	chr11	900122	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	CD81	ENSG00000110651.12	ENST00000475945.6:ENST00000530648.5:ENST00000263645.10	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	2.58765	3.0395399999999997	3.49143	3.88896e-4	6.13943e-5	0.00580877	0.00122382
chr6	37174568	37174664	7136299	0	+	0.479167	(0.455,0.49]	chr6	549953	6	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	94	729	2	3.02551	3.03926	3.05301	1.37427e-8	2.99835e-9	1.11648e-6	2.73697e-7
chr5	146153733	146153810	6891469	0	-	0.480519	(0.455,0.49]	chr5	527549	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.27492	3.0392599999999996	3.8036	0.0193827	1.59194e-4	0.0943643	0.00263091
chr2	27207257	27207354	2569442	0	-	0.546392	(0.53,0.59]	chr2	231233	1	CDS	CDS:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000445802.5:ENST00000412471.5:ENST00000401463.5:ENST00000432106.5:ENST00000426119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.2596	3.0392	3.8188	0.0185443	1.54941e-4	0.0948733	0.0028049
chr19	10115531	10115585	17457673	0	-	0.648148	(0.59,1]	chr19	1460374	2	CDS	CDS:EXON_MRNA	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000593054.5:ENST00000590158.1:ENST00000589454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.42324	3.0391649999999997	3.65509	0.0116918	5.95213e-4	0.0686664	0.00746384
chr16	29664831	29664931	15626158	0	+	0.67	(0.59,1]	chr16	1239196	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	148	2	2.53755	3.03906	3.54057	0.00142129	5.0511e-6	0.0152931	1.5624e-4
chr2	65205107	65205204	1853941	0	+	0.505155	(0.49,0.53]	chr2	175914	1	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	70	2	2.90795	3.0389049999999997	3.16986	3.95698e-4	2.40571e-5	0.00587341	5.6648e-4
chr4	77055149	77055226	5479242	0	-	0.415584	(0.39,0.42]	chr4	439262	1	CDS	CDS:EXON_MRNA:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.91508	3.03858	3.16208	4.41174e-4	2.3671e-5	0.0062930699999999996	5.5951e-4
chr2	28800089	28800187	1702899	0	+	0.418367	(0.39,0.42]	chr2	167042	9	UTR3	UTR3:EXON_MRNA:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	2.98752	3.038505	3.08949	2.91053e-4	1.31388e-4	0.00462551	0.00226623
chr1	230203136	230203213	749023	0	+	0.571429	(0.53,0.59]	chr1	76013	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.45844	3.0385	3.61856	0.0303021	0.00930921	0.129773	0.0587563
chr11	62616986	62617076	12409626	0	-	0.588889	(0.53,0.59]	chr11	961205	1	CDS	CDS:UTR3:EXON_MRNA	B3GAT3	ENSG00000149541.10	ENST00000265471.10:ENST00000531383.5:ENST00000532585.5:ENST00000534026.5:ENST00000533303.1:ENST00000534715.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.45844	3.0385	3.61856	0.0303021	0.00930921	0.129773	0.0587563
chr10	21732992	21733087	10961820	0	+	0.4	(0.39,0.42]	chr10	834180	2	CDS	CDS:UTR3:EXON_MRNA	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.74829	3.0382	3.32811	0.00182819	8.96426e-4	0.0183913	0.0102618
chr6	30590534	30590601	7111576	0	+	0.537313	(0.53,0.59]	chr6	544895	1	CDS	CDS:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1:ENST00000479542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	1.76849	3.038125	4.30776	0.0420665	0.00407289	0.158792	0.0324137
chr7	127721286	127721343	8515639	0	+	0.473684	(0.455,0.49]	chr7	649712	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	71	2	2.60239	3.03801	3.47363	1.87176e-4	1.0662e-5	0.00299689	3.17854e-4
chr17	16439576	16439667	16142067	0	+	0.494505	(0.49,0.53]	chr17	1300750	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000584141.5:ENST00000658116.1:ENST00000492250.5:ENST00000654356.1:ENST00000578757.5:ENST00000475953.5:ENST00000578380.6:ENST00000470491.6:ENST00000581913.5:ENST00000660462.1:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	10	104	2	2.22491	3.03777	3.85063	0.00273167	2.87679e-8	0.0246202	1.9242e-6
chr2	65205204	65205302	1853942	0	+	0.418367	(0.39,0.42]	chr2	175914	2	EXON_PSEUDO	EXON_PSEUDO	VDAC2P5	ENSG00000172974.11	ENST00000467568.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	28	2	3.02517	3.037735	3.0503	0.00570576	8.3811e-4	0.0424438	0.00981548
chr2	159748203	159748303	2163033	0	+	0.39	(0.36,0.39]	chr2	199192	5	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.53311	3.037675	3.54224	0.00345778	4.51643e-5	0.0293796	9.43703e-4
chr2	70088911	70089008	1878490	0	+	0.319588	(0.29,0.33]	chr2	177398	2	UTR3	UTR3:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	34	185	2	2.87446	3.03755	3.20064	2.61503e-7	3.86963e-8	1.27244e-5	2.73431e-6
chr18	59329209	59329308	17142325	0	-	0.353535	(0.33,0.36]	chr18	1407602	15	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	2.58647	3.037365	3.48826	6.31966e-4	9.19545e-8	0.00837621	5.19535e-6
chr2	47806280	47806358	1788269	0	+	0.358974	(0.33,0.36]	chr2	172688	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.75192	3.03731	3.3227	0.00318114	0.00222616	0.0267094	0.0211992
chr6	31642828	31642923	7661412	0	-	0.6	(0.59,1]	chr6	584828	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000470875.5:ENST00000437771.5:ENST00000465348.5:ENST00000438149.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	2.08709	3.0373	3.98751	0.0301044	0.00890645	0.129773	0.0565003
chr2	110641697	110641754	2837951	0	-	0.403509	(0.39,0.42]	chr2	253292	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	41	2	2.92895	3.03711	3.14527	5.33048e-4	3.36969e-4	0.00742114	0.00475537
chr22	16652812	16652911	18286247	0	+	0.373737	(0.36,0.39]	chr22	1551703	44	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7:ENST00000415121.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	32	2	2.88762	3.03702	3.18642	0.00359152	4.35345e-4	0.0302391	0.005869
chr15	90876959	90877024	15103313	0	+	0.523077	(0.49,0.53]	chr15	1188537	2	CDS	CDS:EXON_MRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.72252	3.036925	3.35133	0.0161474	0.00150139	0.0860154	0.0152367
chrM	2816	2914	19377167	0	+	0.469388	(0.455,0.49]	chrM	1649798	24	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	2709	20252	2	2.82677	3.0368399999999998	3.24691	4.36064e-9	1.84405e-11	3.79389e-7	3.28085e-9
chrX	134417206	134417306	18863448	0	+	0.33	(0.29,0.33]	chrX	1607349	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7:ENST00000370799.5	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	2.11593	3.0368399999999998	3.95775	0.00799071	2.59717e-6	0.0527444	8.95894e-5
chr6	31837239	31837337	7116787	0	+	0.5	(0.49,0.53]	chr6	546228	2	EXON_LNCRNA	EXON_LNCRNA	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	19	178	2	2.48171	3.03683	3.59195	1.02213e-4	6.20729e-9	0.00199025	5.13192e-7
chr1	114730339	114730422	1239730	0	-	0.385542	(0.36,0.39]	chr1	121388	2	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	12	85	2	2.93378	3.03679	3.1398	1.32191e-4	3.40931e-6	0.00246066	1.12474e-4
chr17	58090074	58090173	16287301	0	+	0.494949	(0.49,0.53]	chr17	1320910	9	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.65423	3.03677	4.41931	0.0288442	3.4941e-6	0.129096	1.14163e-4
chrX	103676355	103676450	19155329	0	-	0.505263	(0.49,0.53]	chrX	1629340	2	CDS	CDS:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	15	118	2	2.63498	3.0367300000000004	3.43848	1.72388e-5	3.12402e-6	4.33531e-4	1.15696e-4
chr6	163572705	163572805	7540854	0	+	0.53	(0.49,0.53]	chr6	575649	21	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	135	2	2.93508	3.03669	3.1383	4.24407e-6	2.31502e-6	1.48438e-4	8.14346e-5
chr1	150556706	150556793	468480	0	+	0.586207	(0.53,0.59]	chr1	47470	2	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.94437	3.036495	4.12862	0.0143432	1.21421e-8	0.0783202	9.13557e-7
chr5	53884038	53884135	6575894	0	-	0.360825	(0.36,0.39]	chr5	509078	2	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.06832	3.03643	4.00454	0.0122123	1.78485e-6	0.0702898	6.50204e-5
chr9	120855749	120855849	10834132	0	-	0.49	(0.455,0.49]	chr9	820523	2	UTR3	UTR3:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	2.25245	3.036375	3.8203	0.0025291	6.9787e-6	0.0233955	2.0562e-4
chrX	154353553	154353640	19278011	0	-	0.586207	(0.53,0.59]	chrX	1638269	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000415241.1:ENST00000438732.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	2.76329	3.03636	3.30943	0.0018255	1.32979e-4	0.0183913	0.00228677
chr3	38252816	38252891	3420114	0	+	0.466667	(0.455,0.49]	chr3	297236	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.8708	3.036345	4.20189	0.0324007	0.00397662	0.134751	0.0322851
chr6	149660238	149660337	8018263	0	-	0.464646	(0.455,0.49]	chr6	612659	22	UTR3	UTR3:EXON_MRNA	LATS1	ENSG00000131023.13	ENST00000543571.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.8708	3.036345	4.20189	0.0324007	0.00397662	0.134751	0.0322851
chr12	67292698	67292776	12933925	0	+	0.384615	(0.36,0.39]	chr12	1008057	2	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000539434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.88918	3.03633	3.18348	0.00310315	0.00212816	0.0263402	0.0206577
chr19	28606770	28606853	17280857	0	+	0.445783	(0.42,0.455]	chr19	1428106	2	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1:ENST00000651559.1	lncRNA	lncRNA	lncRNA	lncRNA	14	118	2	2.49412	3.0361900000000004	3.57826	3.62613e-4	1.75617e-8	0.00507539	1.37488e-6
chr3	152465080	152465180	3818529	0	+	0.37	(0.36,0.39]	chr3	325707	28	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	92	2	2.88947	3.036135	3.1828	3.63143e-5	1.38778e-6	8.77394e-4	5.26445e-5
chr1	202333009	202333093	1450346	0	-	0.404762	(0.39,0.42]	chr1	145686	1	CDS	CDS:UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	59	2	2.95786	3.036105	3.11435	0.00138212	1.19537e-5	0.0149186	3.18207e-4
chr2	175947621	175947692	3028321	0	-	0.535211	(0.53,0.59]	chr2	268185	3	CDS	CDS:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.16037	3.0359949999999998	3.91162	0.0254312	4.03766e-6	0.117089	1.29819e-4
chr6	24697882	24697974	7094840	0	+	0.456522	(0.455,0.49]	chr6	542169	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACOT13	ENSG00000112304.11	ENST00000537591.5:ENST00000230048.5:ENST00000476436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	2.52734	3.035975	3.54461	0.00792433	4.40117e-5	0.0523592	9.24938e-4
chr8	47890405	47890480	9816703	0	-	0.413333	(0.39,0.42]	chr8	742761	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	2.82591	3.035765	3.24562	2.09867e-4	5.84121e-5	0.00327655	0.00129108
chr1	206461614	206461711	681249	0	+	0.505155	(0.49,0.53]	chr1	68788	3	UTR3	UTR3:EXON_MRNA	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000624873.3	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.38097	3.03567	3.69037	0.0425419	0.0226513	0.167547	0.10505
chr14	24437384	24437483	14181599	0	+	0.525253	(0.49,0.53]	chr14	1111943	2	UTR3	UTR3:EXON_MRNA	KHNYN	ENSG00000100441.10	ENST00000251343.9:ENST00000556842.5:ENST00000553935.6:ENST00000554268.1:ENST00000556255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.38097	3.03567	3.69037	0.0425419	0.0226513	0.167547	0.10505
chr15	64740352	64740445	15341818	0	-	0.526882	(0.49,0.53]	chr15	1211120	6	UTR3	UTR3:EXON_MRNA	RBPMS2	ENSG00000166831.9	ENST00000300069.5:ENST00000560606.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.38097	3.03567	3.69037	0.0425419	0.0226513	0.167547	0.10505
chr2	87475256	87475355	1931620	0	+	0.525253	(0.49,0.53]	chr2	182249	20	INTRON	INTRON	CYTOR:RP13-511M20.1	ENSG00000222041.11:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000629257.1:ENST00000437561.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.38097	3.03567	3.69037	0.0425419	0.0226513	0.167547	0.10505
chr5	78002901	78003001	6651876	0	-	0.5	(0.49,0.53]	chr5	513894	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AP3B1	ENSG00000132842.14	ENST00000255194.11:ENST00000519295.5:ENST00000522901.1:ENST00000520122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.38097	3.03567	3.69037	0.0425419	0.0226513	0.167547	0.10505
chr12	93504805	93504905	13019619	0	+	0.41	(0.39,0.42]	chr12	1013494	37	UTR3	UTR3:EXON_MRNA	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.13132	3.03564	3.93996	0.02908	0.00841622	0.127648	0.054565
chr14	67649553	67649651	14683051	0	-	0.418367	(0.39,0.42]	chr14	1149578	26	UTR3	UTR3:EXON_MRNA	VTI1B	ENSG00000100568.11	ENST00000554659.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.13132	3.03564	3.93996	0.02908	0.00841622	0.127648	0.054565
chr16	22285379	22285477	15589648	0	+	0.397959	(0.39,0.42]	chr16	1235909	15	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.13132	3.03564	3.93996	0.02908	0.00841622	0.127648	0.054565
chr19	36149973	36150041	17308842	0	+	0.558824	(0.53,0.59]	chr19	1432255	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	11	107	2	2.64528	3.0354650000000003	3.42565	8.40453e-5	3.79876e-6	0.00158454	1.34758e-4
chr6	136259315	136259415	7982290	0	-	0.31	(0.29,0.33]	chr6	610291	28	UTR3	UTR3:EXON_MRNA:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000533422.5:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	46	2	2.85656	3.03499	3.21342	9.79425e-4	1.77124e-5	0.0116574	4.41933e-4
chr7	100629252	100629317	8952251	0	-	0.6	(0.59,1]	chr7	684178	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	133	2	2.22725	3.0348800000000002	3.84251	0.00535937	2.55776e-6	0.0406564	8.84046e-5
chr7	76328087	76328187	8863396	0	-	0.42	(0.39,0.42]	chr7	677476	14	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	2.87382	3.0348499999999996	3.19588	0.00321212	3.04876e-5	0.0280721	6.83541e-4
chr13	41884847	41884943	13993171	0	-	0.302083	(0.29,0.33]	chr13	1097492	10	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.93737	3.034745	3.13212	0.00826984	0.00551048	0.0534766	0.0414592
chr5	96775250	96775346	6721086	0	-	0.302083	(0.29,0.33]	chr5	517382	9	UTR3	UTR3:EXON_MRNA:INTRON	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.93737	3.034745	3.13212	0.00826984	0.00551048	0.0534766	0.0414592
chr7	127374126	127374224	9057523	0	-	0.326531	(0.29,0.33]	chr7	691099	8	CDS	CDS:UTR3:EXON_MRNA	ZNF800	ENSG00000048405.10	ENST00000265827.8:ENST00000393313.5:ENST00000393312.5:ENST00000619291.4	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.93737	3.034745	3.13212	0.00826984	0.00551048	0.0534766	0.0414592
chr11	61353005	61353072	12404408	0	-	0.507463	(0.49,0.53]	chr11	960318	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CYB561A3	ENSG00000162144.10	ENST00000426130.6:ENST00000294072.9:ENST00000540317.5:ENST00000447532.6:ENST00000546151.5:ENST00000540755.5:ENST00000544118.5:ENST00000536915.5:ENST00000539890.1:ENST00000540139.5:ENST00000542361.5:ENST00000537364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.38683	3.034645	3.68246	0.012654	3.06313e-4	0.0718207	0.00442973
chrX	47227378	47227469	18687051	0	+	0.516484	(0.49,0.53]	chrX	1593344	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000523543.1:ENST00000493213.1:ENST00000462827.2:ENST00000520141.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	41	2	2.2359	3.034545	3.83319	0.00449268	1.34601e-4	0.0343656	0.00249552
chrX	154364606	154364688	19278148	0	-	0.621951	(0.59,1]	chrX	1638344	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000465144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	2.32455	3.03451	3.74447	0.0520547	2.8028e-5	0.193787	6.41211e-4
chr16	24561992	24562076	15600793	0	+	0.452381	(0.42,0.455]	chr16	1237030	3	CDS	CDS:EXON_MRNA	RBBP6	ENSG00000122257.20	ENST00000564314.5:ENST00000319715.10:ENST00000381039.7:ENST00000646282.1:ENST00000348022.6:ENST00000562430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	2.62346	3.034415	3.44537	0.00164881	8.6897e-5	0.0163523	0.00177086
chr6	41935666	41935758	7701867	0	-	0.608696	(0.59,1]	chr6	590673	9	UTR3	UTR3:EXON_MRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	3.01432	3.03436	3.0544	0.00121259	2.52807e-4	0.0135383	0.00381058
chr11	34456010	34456106	11906180	0	+	0.479167	(0.455,0.49]	chr11	909799	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	2.74211	3.0342399999999996	3.32637	0.00330545	1.64563e-4	0.028478	0.00269001
chr7	107758334	107758427	8457130	0	+	0.483871	(0.455,0.49]	chr7	646250	3	CDS	CDS:UTR3:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000415884.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.74211	3.0342399999999996	3.32637	0.00330545	1.64563e-4	0.028478	0.00269001
chr8	41509882	41509982	9303506	0	+	0.48	(0.455,0.49]	chr8	712044	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOLGA7	ENSG00000147533.17	ENST00000520817.5:ENST00000405786.2:ENST00000357743.9:ENST00000521417.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	38	2	2.74211	3.0342399999999996	3.32637	0.00330545	1.64563e-4	0.028478	0.00269001
chr17	76564572	76564669	16359195	0	+	0.474227	(0.455,0.49]	chr17	1328581	16	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	12	98	2	2.86221	3.034135	3.20606	3.40578e-5	2.50734e-6	8.32504e-4	8.70761e-5
chr14	72470980	72471079	14392382	0	+	0.606061	(0.59,1]	chr14	1124110	5	INTRON	INTRON	RGS6	ENSG00000182732.18	ENST00000553525.6:ENST00000555571.5:ENST00000553530.5:ENST00000554474.5:ENST00000556437.5:ENST00000407322.8:ENST00000404301.6:ENST00000406236.8:ENST00000355512.10:ENST00000402788.6:ENST00000622468.4:ENST00000343854.10:ENST00000553690.5:ENST00000434263.6:ENST00000555368.5:ENST00000554782.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	280	2	1.85913	3.033855	4.20858	0.00799801	7.17317e-9	0.0527876	5.83082e-7
chr1	11079710	11079766	859281	0	-	0.517857	(0.49,0.53]	chr1	86840	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000470611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	17	2	1.99044	3.0338149999999997	4.07719	0.0435903	0.0074411	0.170594	0.0492519
chr11	126263523	126263621	12645139	0	-	0.459184	(0.455,0.49]	chr11	981826	7	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.50703	3.0336999999999996	3.56037	6.13589e-4	5.72551e-4	0.0078026	0.00765301
chr8	47774172	47774272	9815464	0	-	0.55	(0.53,0.59]	chr8	742454	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	114	2	2.50329	3.03361	3.56393	1.34856e-4	1.3485e-6	0.00249892	5.15751e-5
chr4	56476670	56476702	4848874	0	+	0.4375	(0.42,0.455]	chr4	399502	1	CDS	CDS:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2:ENST00000646537.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.36247	3.03349	3.70451	0.0462889	2.72131e-4	0.176878	0.00404713
chr1	182384650	182384723	1401223	0	-	0.534247	(0.53,0.59]	chr1	141692	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000461447.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	109	2	2.4751	3.03345	3.5918	7.16255e-4	3.29531e-7	0.00901405	1.55467e-5
chr11	127941097	127941190	12651332	0	-	0.483871	(0.455,0.49]	chr11	982041	3	EXON_PSEUDO	EXON_PSEUDO	DNAJB6P1	ENSG00000254612.2	ENST00000526843.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	37	2	2.92901	3.0334399999999997	3.13787	0.00141135	4.66183e-4	0.0151901	0.00616585
chr5	115613808	115613908	6776984	0	-	0.22	[0,0.29]	chr5	519913	7	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	49	2	2.91289	3.0334000000000003	3.15391	9.07288e-4	9.73278e-6	0.0110102	2.70285e-4
chr6	28159361	28159460	7105845	0	+	0.40404	(0.39,0.42]	chr6	543601	55	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.73522	3.03326	4.3313	0.0216784	0.00209984	0.103158	0.0204266
chr1	150236063	150236156	1288602	0	-	0.612903	(0.59,1]	chr1	128171	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000369114.9:ENST00000369115.3:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	6	92	2	2.62409	3.033235	3.44238	0.00158239	4.69603e-4	0.0167793	0.00620826
chr3	33866624	33866723	3399904	0	+	0.444444	(0.42,0.455]	chr3	295769	2	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	66	2	2.90422	3.033225	3.16223	4.45084e-4	2.46215e-5	0.00633715	5.75275e-4
chr11	85983865	85983919	12525981	0	-	0.314815	(0.29,0.33]	chr11	972198	1	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	8	51	2	2.33272	3.03322	3.73372	0.00296866	1.52653e-6	0.0264052	5.7064e-5
chr11	61300808	61300872	12403890	0	-	0.515625	(0.49,0.53]	chr11	960175	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1:ENST00000540166.5:ENST00000538470.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	57	2	2.95291	3.0331	3.11329	0.00119735	3.3061e-5	0.0134293	7.31089e-4
chr19	1037900	1037997	17190844	0	+	0.453608	(0.42,0.455]	chr19	1411408	1	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000568865.3:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	98	2	3.01537	3.033	3.05063	5.43749e-5	3.07447e-6	0.00121043	1.03124e-4
chr1	15940362	15940456	71947	0	+	0.255319	[0,0.29]	chr1	8126	11	UTR3	UTR3:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.99212	3.03281	3.0735	0.00785095	0.0069187	0.0520241	0.0473262
chr19	40624008	40624082	17330482	0	+	0.689189	(0.59,1]	chr19	1436054	2	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597816.5:ENST00000597151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	47	2	2.32455	3.032695	3.74084	0.0520547	4.03818e-4	0.193787	0.00550292
chr9	128163615	128163692	10476938	0	+	0.701299	(0.59,1]	chr9	789634	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C9orf16	ENSG00000171159.5	ENST00000372994.2:ENST00000492588.1:ENST00000486420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.32455	3.032695	3.74084	0.0520547	4.03818e-4	0.193787	0.00550292
chr8	108214661	108214716	10002427	0	-	0.4	(0.39,0.42]	chr8	754160	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	108	2	2.71916	3.032645	3.34613	2.11218e-4	1.78322e-7	0.00357316	9.2209e-6
chr11	47797977	47798074	12389539	0	-	0.42268	(0.42,0.455]	chr11	957441	1	CDS	CDS:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr12	120784525	120784593	13581941	0	-	0.441176	(0.42,0.455]	chr12	1069251	1	CDS	CDS:UTR5:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5:ENST00000534966.1:ENST00000540091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr2	30533251	30533319	1708463	0	+	0.441176	(0.42,0.455]	chr2	167628	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000488144.5:ENST00000465538.5:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000497423.1:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr4	48379689	48379762	4826385	0	+	0.424658	(0.42,0.455]	chr4	397707	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000506375.1:ENST00000512093.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr4	108019539	108019602	5037180	0	+	0.444444	(0.42,0.455]	chr4	409749	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HADH	ENSG00000138796.18	ENST00000603302.5:ENST00000505878.4:ENST00000639335.1:ENST00000639146.1:ENST00000640752.2:ENST00000507260.3:ENST00000640201.2:ENST00000682197.1:ENST00000638621.1:ENST00000684696.1:ENST00000309522.8:ENST00000403312.6:ENST00000640060.1:ENST00000638559.1:ENST00000682373.1:ENST00000640586.1:ENST00000639698.1:ENST00000638648.2:ENST00000626637.2:ENST00000682067.1:ENST00000639784.1:ENST00000640048.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr6	159778224	159778280	7526935	0	+	0.428571	(0.42,0.455]	chr6	574545	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000472052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr7	155646616	155646715	8633133	0	+	0.444444	(0.42,0.455]	chr7	659342	13	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.36247	3.0326	3.70273	0.0462889	0.0215502	0.176878	0.102904
chr12	910269	910368	12681687	0	+	0.30303	(0.29,0.33]	chr12	984184	16	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.24226	3.03253	3.8228	0.0306054	1.45428e-4	0.130226	0.00244094
chrX	103253534	103253625	19154916	0	-	0.318681	(0.29,0.33]	chrX	1629256	7	UTR3	UTR3:EXON_MRNA	TCEAL8	ENSG00000180964.17	ENST00000360000.8:ENST00000372685.8	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.24226	3.03253	3.8228	0.0306054	1.45428e-4	0.130226	0.00244094
chr17	77216922	77217011	16362239	0	+	0.258427	[0,0.29]	chr17	1329015	5	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.99144	3.03247	3.0735	0.00785095	0.00112713	0.0520241	0.0122637
chr11	4121710	4121765	11774298	0	+	0.418182	(0.39,0.42]	chr11	901004	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000528442.5:ENST00000534285.5:ENST00000533495.5:ENST00000526304.5:ENST00000528470.5:ENST00000531591.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.86895	3.032415	3.19588	0.00321212	0.00177945	0.0280721	0.0172974
chr7	128984167	128984259	9060469	0	-	0.413043	(0.39,0.42]	chr7	691809	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.86895	3.032415	3.19588	0.00321212	0.00177945	0.0280721	0.0172974
chrX	41675170	41675268	19049246	0	-	0.408163	(0.39,0.42]	chrX	1619182	33	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643853.1:ENST00000643831.2:ENST00000647118.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.86895	3.032415	3.19588	0.00321212	0.00177945	0.0280721	0.0172974
chrX	71296564	71296609	18730852	0	+	0.511111	(0.49,0.53]	chrX	1598423	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	2.25637	3.03231	3.80825	0.00420813	7.68944e-6	0.0329484	2.20857e-4
chr10	27148972	27149040	11423681	0	-	0.411765	(0.39,0.42]	chr10	870994	2	CDS	CDS:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	2.9052	3.0321749999999996	3.15915	2.84183e-5	2.43771e-5	7.14297e-4	5.71478e-4
chr19	12643830	12643888	17469629	0	-	0.517241	(0.49,0.53]	chr19	1462696	1	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	RPL10P16:CTD-2192J16.22	ENSG00000178464.6:ENSG00000269242.1	ENST00000325000.4:ENST00000597692.1	protein_coding	nonsense_mediated_decay	protein_coding:processed_pseudogene	nonsense_mediated_decay:processed_pseudogene	15	147	2	2.51969	3.032125	3.54456	3.14382e-4	1.70327e-8	0.00485265	1.23006e-6
chr5	179618165	179618265	7002100	0	-	0.55	(0.53,0.59]	chr5	536264	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000393432.8:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000329433.10:ENST00000502632.5:ENST00000519958.5:ENST00000504549.5:ENST00000514731.5:ENST00000521173.5:ENST00000523921.1:ENST00000503105.5:ENST00000504779.6:ENST00000520415.1:ENST00000518548.5:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	94	2	2.53324	3.0320850000000004	3.53093	1.72957e-4	7.41975e-6	0.00280984	2.3596e-4
chrX	41343230	41343330	18669434	0	+	0.39	(0.36,0.39]	chrX	1592202	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1:ENST00000647286.1:ENST00000642687.1:ENST00000647373.1:ENST00000642801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.63521	3.03206	3.42891	0.00633242	9.14064e-5	0.0446708	0.0016849
chr11	75572483	75572583	12023395	0	+	0.58	(0.53,0.59]	chr11	927027	5	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	2.84458	3.031995	3.21941	0.00266171	5.21436e-4	0.0240332	0.00674101
chr19	1440128	1440219	17193291	0	+	0.626374	(0.59,1]	chr19	1412198	1	CDS	CDS:EXON_MRNA	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	216	2	2.08798	3.03192	3.97586	8.55167e-4	1.34487e-6	0.00998001	5.6532e-5
chr12	50453601	50453672	12871948	0	+	0.43662	(0.42,0.455]	chr12	1000155	3	CDS	CDS:EXON_MRNA:INTRON	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000614335.4:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	2.75179	3.0317	3.31161	0.00186138	8.66526e-4	0.018635	0.0100799
chr10	17715753	17715850	10940203	0	+	0.28866000000000003	[0,0.29]	chr10	833147	11	UTR3	UTR3:EXON_MRNA	STAM	ENSG00000136738.15	ENST00000377524.8	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.16074	3.03125	3.90176	0.0222978	0.00977224	0.105845	0.0611259
chr6	145799809	145799907	8010678	0	-	0.27551	[0,0.29]	chr6	611965	65	UTR3	UTR3:EXON_MRNA	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.16074	3.03125	3.90176	0.0222978	0.00977224	0.105845	0.0611259
chr19	15835375	15835470	17246590	0	+	0.347368	(0.33,0.36]	chr19	1422765	7	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	4	27	2	2.46028	3.03113	3.60198	0.00381804	6.01238e-4	0.0309081	0.00811676
chr19	38730216	38730314	17323772	0	+	0.408163	(0.39,0.42]	chr19	1434386	3	UTR3	UTR3:EXON_MRNA	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2	protein_coding	protein_coding	protein_coding	protein_coding	33	229	2	2.65987	3.03113	3.40239	2.55162e-6	3.17217e-9	8.83587e-5	3.1239e-7
chr7	135648456	135648556	8553348	0	+	0.41	(0.39,0.42]	chr7	652918	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5:ENST00000490439.1:ENST00000491089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.30055	3.03098	3.76141	0.0070645	2.14058e-4	0.0477419	0.00359478
chr1	248848731	248848829	818927	0	+	0.55102	(0.53,0.59]	chr1	81051	2	UTR3	UTR3:EXON_MRNA	ZNF672	ENSG00000171161.13	ENST00000306562.8	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	1.89806	3.030945	4.16383	0.0532477	0.00659193	0.184818	0.0454205
chr10	50305779	50305876	11486509	0	-	0.278351	[0,0.29]	chr10	876691	3	UTR3	UTR3:EXON_MRNA	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.40395	3.030925	3.6579	0.0210081	0.0197988	0.101116	0.0983378
chr16	85672439	85672539	15798077	0	+	0.58	(0.53,0.59]	chr16	1257093	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1:ENST00000496345.1:ENST00000471070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	41	2	2.45052	3.030925	3.61133	0.00355092	4.55298e-4	0.0300049	0.00608573
chr19	49909511	49909609	17608191	0	-	0.530612	(0.53,0.59]	chr19	1484492	13	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	IL4I1:NUP62:CTC-326K19.6	ENSG00000104951.16:ENSG00000213024.12:ENSG00000269179.1	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1:ENST00000595463.5:ENST00000593652.5:ENST00000595761.1:ENST00000451973.1:ENST00000599567.5:ENST00000600645.1:ENST00000596437.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	55	2	2.45052	3.03077	3.61102	0.00355092	3.01487e-5	0.0300049	6.78876e-4
chr22	16807139	16807238	18421148	0	-	0.282828	[0,0.29]	chr22	1569146	68	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.42645	3.030665	3.63488	0.0123114	7.12896e-4	0.070688	0.00897774
chr12	93574989	93575079	13019793	0	+	0.577778	(0.53,0.59]	chr12	1013515	4	CDS	CDS:UTR3:EXON_MRNA	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000536696.6:ENST00000548091.5:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000549887.1:ENST00000551556.2:ENST00000551883.1:ENST00000549510.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.05734	3.030635	4.00393	0.0167029	0.0108084	0.0883198	0.064368
chr5	127547818	127547884	6204985	0	+	0.393939	(0.39,0.42]	chr5	483451	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2:ENST00000513427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.70591	3.030285	3.35466	0.0185716	1.40185e-4	0.0932453	0.00236775
chr21	29342930	29343028	18090045	0	+	0.326531	(0.29,0.33]	chr21	1533713	2	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.92814	3.0301299999999998	3.13212	0.00551048	1.23255e-4	0.0414592	0.00214023
chr4	169720650	169720747	5218197	0	+	0.42268	(0.42,0.455]	chr4	420942	7	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.26097	3.02989	3.79881	0.00404179	1.65328e-4	0.032143	0.0029267300000000002
chr12	123289607	123289707	13595014	0	-	0.42	(0.39,0.42]	chr12	1070977	6	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	1.91489	3.02983	4.14477	0.0197788	2.09513e-5	0.0960939	5.04211e-4
chr18	32124789	32124845	16810830	0	+	0.410714	(0.39,0.42]	chr18	1386611	2	CDS	CDS:EXON_MRNA	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000257190.9:ENST00000577999.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.86368	3.0297799999999997	3.19588	0.0101619	0.00321212	0.0627153	0.0280721
chr3	131462722	131462822	4450171	0	-	0.44	(0.42,0.455]	chr3	370091	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000510043.1:ENST00000425847.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.59462	3.029055	3.46349	0.0062772	9.0025e-4	0.0445415	0.0102618
chr10	7797112	7797178	10915947	0	+	0.454545	(0.42,0.455]	chr10	831319	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	17	2	2.20599	3.028745	3.8515	0.0227797	0.0119089	0.105293	0.0686664
chrM	2719	2816	19377166	0	+	0.381443	(0.36,0.39]	chrM	1649798	23	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	3286	20560	2	2.6026	3.02869	3.45478	3.35997e-8	1e-12	2.19355e-6	2.46312e-10
chr8	127738262	127738362	9612650	0	+	0.53	(0.49,0.53]	chr8	728487	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	105	2	2.81298	3.02867	3.24436	4.66923e-5	1.8905e-6	0.00107256	6.86398e-5
chr8	47778525	47778592	9815513	0	-	0.477612	(0.455,0.49]	chr8	742472	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1:ENST00000521331.5:ENST00000536710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	2.71913	3.02862	3.33811	0.00103266	2.75808e-5	0.011478	6.9956e-4
chr9	124384597	124384656	10849825	0	-	0.474576	(0.455,0.49]	chr9	821885	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000474081.5:ENST00000478817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	2.59329	3.0285900000000003	3.46389	9.14164e-4	7.86326e-4	0.0110519	0.00929193
chr12	7136828	7136922	12717234	0	+	0.62766	(0.59,1]	chr12	987673	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000541667.5:ENST00000537408.1:ENST00000540931.1:ENST00000535668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	43	2	2.69477	3.0285	3.36223	0.020208	0.00203572	0.0978331	0.0192213
chr12	56612151	56612246	13351842	0	-	0.463158	(0.455,0.49]	chr12	1051683	5	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.9967	3.0284750000000003	3.06025	0.00650423	1.55878e-4	0.0454205	0.00259387
chr11	32594913	32595013	11898233	0	+	0.36	(0.33,0.36]	chr11	908915	1	CDS	CDS:UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000323213.9:ENST00000524711.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	52	2	2.83804	3.0284050000000002	3.21877	9.45896e-5	8.57053e-5	0.00188469	0.00160731
chr1	155731355	155731415	484516	0	+	0.4	(0.39,0.42]	chr1	50989	1	CDS	CDS:EXON_MRNA	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000497826.5:ENST00000479151.5:ENST00000462978.1:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000497433.1:ENST00000463295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	35	2	2.22707	3.0284	3.82973	0.00574688	1.3728e-4	0.0426551	0.00232973
chr13	25342222	25342321	13647979	0	+	0.232323	[0,0.29]	chr13	1075929	22	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	2.15488	3.02832	3.90176	0.0436536	0.00977224	0.170594	0.0611259
chr16	2601019	2601118	15494208	0	+	0.272727	[0,0.29]	chr16	1227686	34	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PDPK1	ENSG00000140992.19	ENST00000268673.11:ENST00000342085.9:ENST00000561962.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	11	2	2.15488	3.02832	3.90176	0.0436536	0.00977224	0.170594	0.0611259
chr17	28573525	28573621	16485913	0	-	0.541667	(0.53,0.59]	chr17	1347738	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	221	2	2.78207	3.0283100000000003	3.27455	5.942e-5	2.85179e-8	0.00130151	1.91003e-6
chrX	48794168	48794268	18693028	0	+	0.6	(0.59,1]	chrX	1594416	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.82129	3.028295	4.2353	0.0227814	0.0165254	0.105293	0.0873033
chr2	216161978	216162048	2380278	0	+	0.457143	(0.455,0.49]	chr2	213841	1	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.85172	3.0282	3.20468	0.010864	6.38295e-5	0.0643837	0.00125289
chr2	218279288	218279353	3186697	0	-	0.476923	(0.455,0.49]	chr2	279939	1	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5:ENST00000492966.5:ENST00000466012.5:ENST00000429501.5:ENST00000425694.5:ENST00000476429.5:ENST00000495113.5:ENST00000418569.5:ENST00000440422.5:ENST00000444183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	2.85172	3.0282	3.20468	0.010864	6.38295e-5	0.0643837	0.00125289
chr6	7289280	7289377	7586886	0	-	0.350515	(0.33,0.36]	chr6	578694	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	47	2	2.05144	3.0281700000000003	4.0049	0.00903135	1.77926e-6	0.0573114	6.4851e-5
chr10	7800026	7800091	10915982	0	+	0.430769	(0.42,0.455]	chr10	831333	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000473809.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	184	2	2.92719	3.02811	3.12903	6.36348e-7	4.90226e-7	3.01876e-5	2.17155e-5
chr12	63822316	63822414	12916669	0	+	0.326531	(0.29,0.33]	chr12	1006815	4	EXON_PSEUDO	EXON_PSEUDO	PABPC1P4	ENSG00000255642.1	ENST00000539977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	84	2	1.99395	3.0280899999999997	4.06223	0.0131526	2.86508e-9	0.0733631	2.62562e-7
chr1	220143963	220144060	1511844	0	-	0.443299	(0.42,0.455]	chr1	151208	1	EXON_PSEUDO	EXON_PSEUDO	RPS15AP12	ENSG00000232134.1	ENST00000419498.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	83	2	2.5451	3.028085	3.51107	0.00112955	5.42418e-7	0.0128875	2.37553e-5
chr7	138567480	138567567	8563367	0	+	0.482759	(0.455,0.49]	chr7	653279	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	2.96139	3.0278400000000003	3.09429	2.95549e-4	3.75881e-5	0.00467597	8.15231e-4
chr2	20308403	20308493	2541240	0	-	0.388889	(0.36,0.39]	chr2	228576	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.38564	3.02771	3.66978	0.0476159	3.25031e-4	0.17993	0.00463603
chr3	113810887	113810984	3676133	0	+	0.371134	(0.36,0.39]	chr3	314510	16	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.38564	3.02771	3.66978	0.0476159	3.25031e-4	0.17993	0.00463603
chr5	133959580	133959668	6843166	0	-	0.375	(0.36,0.39]	chr5	523549	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.38564	3.02771	3.66978	0.0476159	3.25031e-4	0.17993	0.00463603
chr14	100342484	100342571	14788584	0	-	0.563218	(0.53,0.59]	chr14	1158706	3	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000557614.1:ENST00000554601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	106	2	1.75005	3.02763	4.30521	0.0106076	1.63381e-8	0.0640804	1.18357e-6
chr4	102796142	102796240	5563914	0	-	0.316327	(0.29,0.33]	chr4	444349	19	UTR3	UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	128	2	2.94256	3.027615	3.11267	7.63325e-7	6.33061e-7	3.52166e-5	2.70998e-5
chr1	11804532	11804632	861869	0	-	0.41	(0.39,0.42]	chr1	87418	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376585.6:ENST00000641747.1:ENST00000641446.1:ENST00000376486.3:ENST00000641437.1:ENST00000418034.1:ENST00000431243.6:ENST00000642002.1:ENST00000413656.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	2.95786	3.02761	3.09736	0.00138212	5.79886e-4	0.0149186	0.00734771
chr6	27807906	27807931	7649606	0	-	0.32	(0.29,0.33]	chr6	582803	1	UTR5	UTR5:EXON_MRNA	H2BC13	ENSG00000185130.5	ENST00000377401.3	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.93737	3.02735	3.11733	0.00826984	6.70613e-5	0.0534766	0.00142582
chr1	32389788	32389888	922515	0	-	0.49	(0.455,0.49]	chr1	97188	25	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.12994	3.027285	3.92463	0.0304832	0.0113417	0.130204	0.0665375
chr16	70571094	70571146	15730171	0	+	0.538462	(0.53,0.59]	chr16	1253025	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.515	3.02715	3.5393	0.0292633	6.46017e-4	0.129773	0.00799743
chr2	64665972	64666064	1852908	0	+	0.576087	(0.53,0.59]	chr2	175790	5	EXON_PSEUDO	EXON_PSEUDO	RPS10P9	ENSG00000227791.3	ENST00000428806.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	28	2	2.515	3.02715	3.5393	0.0292633	6.46017e-4	0.129773	0.00799743
chr1	226900251	226900349	739706	0	+	0.581633	(0.53,0.59]	chr1	74643	3	INTRON	INTRON	RP5-1087E8.6:PSEN2	ENSG00000288674.1:ENSG00000143801.18	ENST00000366779.6:ENST00000676884.1:ENST00000678835.1:ENST00000677599.1:ENST00000678233.1:ENST00000678820.1:ENST00000676945.1:ENST00000679098.1:ENST00000678655.1:ENST00000676747.1:ENST00000485677.2:ENST00000676616.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	110	2	2.15403	3.0271	3.90017	0.0118065	2.35304e-8	0.0686664	1.62079e-6
chr2	74156567	74156645	2740236	0	-	0.371795	(0.36,0.39]	chr2	243881	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.02118	3.02701	4.03284	0.0251625	4.15492e-5	0.117055	8.8376e-4
chr19	49681909	49681987	17372081	0	+	0.538462	(0.53,0.59]	chr19	1443514	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	PRMT1:MIR5088	ENSG00000126457.22:ENSG00000274306.1	ENST00000529284.5:ENST00000532489.5:ENST00000527382.5:ENST00000528623.5:ENST00000534465.6:ENST00000610806.4:ENST00000391851.8:ENST00000534280.5:ENST00000534676.5:ENST00000454376.7:ENST00000525616.1:ENST00000524771.5:ENST00000529836.5:ENST00000526224.5:ENST00000527412.1:ENST00000615402.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	35	2	2.94125	3.027	3.11275	0.00407571	0.0012261800000000001	0.032143	0.0135648
chr5	126628018	126628093	6810489	0	-	0.413333	(0.39,0.42]	chr5	521318	1	EXON_PSEUDO	EXON_PSEUDO	RP11-395C3.1	ENSG00000230929.5	ENST00000490423.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	20	2	2.11399	3.026975	3.93996	0.014455	0.00841622	0.0787564	0.054565
chr12	118139450	118139500	13108883	0	+	0.46	(0.455,0.49]	chr12	1023115	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PEBP1	ENSG00000089220.5	ENST00000261313.3:ENST00000542939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.69344	3.02697	3.3605	0.0176068	0.00147278	0.0925619	0.0157578
chr22	38745683	38745747	18511671	0	-	0.609375	(0.59,1]	chr22	1580347	1	CDS	CDS:EXON_MRNA	SUN2	ENSG00000100242.15	ENST00000405510.5:ENST00000405018.5:ENST00000406622.5:ENST00000430185.5:ENST00000438058.5	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.32455	3.026865	3.72918	0.0520547	5.26949e-6	0.193787	1.61486e-4
chr1	149851060	149851113	464855	0	+	0.566038	(0.53,0.59]	chr1	46802	1	UTR5	UTR5:EXON_MRNA	H2AC19	ENSG00000272196.2	ENST00000607355.2	protein_coding	protein_coding	protein_coding	protein_coding	11	122	2	2.2203	3.026835	3.83337	0.0016462	4.15519e-8	0.0163443	2.90659e-6
chr1	156130616	156130694	486071	0	+	0.564103	(0.53,0.59]	chr1	51263	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000469565.6:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	81	2	2.56208	3.026835	3.49159	1.4409e-4	6.29049e-5	0.00242438	0.00135218
chr16	47505140	47505237	15644805	0	+	0.525773	(0.49,0.53]	chr16	1243348	17	INTRON	INTRON	PHKB	ENSG00000102893.16	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	2.99849	3.026805	3.05512	0.00630123	1.59562e-4	0.0445415	0.00263091
chr19	36142651	36142741	17308757	0	+	0.588889	(0.53,0.59]	chr19	1432226	1	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000591041.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5:ENST00000592354.5:ENST00000586963.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	8	86	2	2.80515	3.02677	3.24839	6.42453e-4	4.84953e-6	0.00850441	1.51537e-4
chr2	106697618	106697714	2825356	0	-	0.510417	(0.49,0.53]	chr2	252231	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	36	2	2.56183	3.02663	3.49143	0.0261296	6.13943e-5	0.118976	0.00122382
chr11	17075453	17075538	12295029	0	-	0.4	(0.39,0.42]	chr11	950295	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000531908.5:ENST00000531008.5:ENST00000525828.1:ENST00000533969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	50	384	2	2.47766	3.026615	3.57557	3.71992e-6	1.0725e-10	1.32276e-4	1.44308e-8
chr1	44759205	44759276	173979	0	+	0.577465	(0.53,0.59]	chr1	22371	1	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.36244	3.026545	3.69065	0.0131162	3.04331e-4	0.073569	0.00472028
chr7	135648654	135648753	8553350	0	+	0.272727	[0,0.29]	chr7	652919	2	UTR3	UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5:ENST00000490439.1:ENST00000491089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	55	2	2.93819	3.026515	3.11484	1.13918e-4	1.30829e-5	0.00217638	3.43807e-4
chr8	144096123	144096186	9650294	0	+	0.571429	(0.53,0.59]	chr8	731511	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000528618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.92962	3.02651	3.1234	0.00390623	0.0012954	0.0322851	0.0136936
chr1	30733438	30733535	915556	0	-	0.391753	(0.39,0.42]	chr1	95861	11	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.75826	3.026385	3.29451	0.00103132	1.98354e-4	0.0121443	0.00314412
chr21	29342833	29342930	18090044	0	+	0.391753	(0.39,0.42]	chr21	1533713	1	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.75826	3.026385	3.29451	0.00103132	1.98354e-4	0.0121443	0.00314412
chr5	133074059	133074126	6226865	0	+	0.358209	(0.33,0.36]	chr5	484753	2	CDS	CDS:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1	protein_coding	protein_coding	protein_coding	protein_coding	7	49	2	2.88494	3.026265	3.16759	6.89291e-4	2.36136e-5	0.00876781	5.58343e-4
chr15	90487494	90487582	15100661	0	+	0.465909	(0.455,0.49]	chr15	1188196	1	CDS	CDS:UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000561132.5:ENST00000561461.5:ENST00000559031.1:ENST00000559674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.85172	3.026205	3.20069	0.010864	0.00285821	0.0643837	0.0245841
chr10	100364027	100364127	11219500	0	+	0.31	(0.29,0.33]	chr10	853930	32	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	12	73	2	3.00767	3.02612	3.04457	1.09203e-4	3.18598e-6	0.00209994	1.06184e-4
chr2	169806838	169806892	2197767	0	+	0.296296	(0.29,0.33]	chr2	201111	2	CDS	CDS:UTR3:EXON_MRNA	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000409333.1:ENST00000468600.1:ENST00000474273.5:ENST00000465871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	57	2	2.39609	3.0259400000000003	3.65579	0.0040115	5.45263e-7	0.0324137	2.38626e-5
chr1	32042720	32042816	125858	0	+	0.375	(0.36,0.39]	chr1	15466	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	87	2	2.97662	3.02589	3.07516	9.2905e-6	6.89731e-6	2.85793e-4	0.00020353099999999999
chr11	2397131	2397220	11764985	0	+	0.662921	(0.59,1]	chr11	900180	4	UTR3	UTR3:EXON_MRNA	CD81	ENSG00000110651.12	ENST00000263645.10:ENST00000526072.5:ENST00000531840.1:ENST00000468153.1:ENST00000481386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.9891200000000002	3.02585	3.06258	0.00823979	0.00616167	0.0540283	0.0438642
chr5	43298865	43298965	6560258	0	-	0.42	(0.39,0.42]	chr5	508375	1	CDS_START	CDS_START:CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000507004.1:ENST00000507293.1:ENST00000511774.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	36	2	2.38682	3.025745	3.66467	0.00228306	3.60066e-4	0.0209856	0.00544157
chr12	53297849	53297924	12885751	0	+	0.493333	(0.49,0.53]	chr12	1002258	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	PFDN5:RP11-680A11.7	ENSG00000123349.15:ENSG00000288663.1	ENST00000551018.5:ENST00000550069.2:ENST00000676527.1:ENST00000677326.1:ENST00000549759.2:ENST00000677982.1:ENST00000628881.2:ENST00000679196.1:ENST00000676940.1:ENST00000676632.1:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000677199.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000678284.1:ENST00000677184.1:ENST00000552742.6:ENST00000677712.1:ENST00000550513.1:ENST00000678985.1:ENST00000553171.2:ENST00000552548.6:ENST00000550964.6:ENST00000548984.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	10	84	2	2.81349	3.0256499999999997	3.23781	5.17993e-5	2.52154e-5	0.00115752	5.85193e-4
chr17	81855559	81855586	16709628	0	-	0.555556	(0.53,0.59]	chr17	1377715	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	70	2	2.38191	3.02553	3.66915	0.00477439	2.76654e-6	0.0368489	9.47025e-5
chr2	47410279	47410372	1784578	0	+	0.505376	(0.49,0.53]	chr2	172455	3	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	1.92759	3.0251099999999997	4.12263	0.0267071	0.00591451	0.118504	0.0427941
chr3	100728769	100728869	3637586	0	+	0.41	(0.39,0.42]	chr3	311839	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	2.5823	3.0251099999999997	3.46792	0.00246531	7.10972e-5	0.0230262	0.00136974
chr16	154271	154300	15480577	0	+	0.655172	(0.59,1]	chr16	1224151	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	41	688	2	2.87154	3.0248749999999998	3.17821	3.08761e-6	3.55259e-7	1.03508e-4	1.85736e-5
chr4	102885215	102885286	5014905	0	+	0.478873	(0.455,0.49]	chr4	408743	1	CDS	CDS:UTR3:EXON_MRNA	CISD2	ENSG00000145354.12	ENST00000646632.1:ENST00000273986.10:ENST00000574446.1:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.92099	3.02471	3.12843	0.00392855	0.00138399	0.0322851	0.0143168
chr8	27810404	27810501	9771142	0	-	0.350515	(0.33,0.36]	chr8	738651	1	CDS	CDS:UTR3:EXON_MRNA	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	2.32576	3.024705	3.72365	0.0017547	3.19155e-4	0.0171423	0.00491578
chr6	159679508	159679608	8048200	0	-	0.26	[0,0.29]	chr6	615183	106	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	2.80134	3.024545	3.24775	0.0049344	2.91652e-4	0.0379087	0.00428484
chr1	11056680	11056757	859100	0	-	0.519481	(0.49,0.53]	chr1	86772	2	CDS	CDS:UTR3:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000376957.7:ENST00000459997.1:ENST00000465788.1:ENST00000487300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.69746	3.024395	3.35133	0.00380414	0.00150139	0.0317723	0.0152367
chr9	137111872	137111950	10893150	0	-	0.730769	(0.59,1]	chr9	828360	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPP7	ENSG00000176978.14	ENST00000371579.7:ENST00000473532.5:ENST00000470766.5:ENST00000463619.1:ENST00000483783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.92097	3.0243349999999998	3.1277	0.0102634	0.00490589	0.0628742	0.0366648
chr3	14472213	14472313	3320697	0	+	0.44	(0.42,0.455]	chr3	292256	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	94	2	2.83935	3.0242649999999998	3.20918	2.08187e-5	6.08017e-6	5.02683e-4	1.99809e-4
chr6	26199939	26200036	7101575	0	+	0.391753	(0.39,0.42]	chr6	542852	1	UTR3	UTR3:EXON_MRNA	H2BC7	ENSG00000277224.2	ENST00000356530.5	protein_coding	protein_coding	protein_coding	protein_coding	13	88	2	2.55307	3.024185	3.4953	7.09177e-5	2.01012e-6	0.00149851	7.18317e-5
chr1	151052050	151052148	1291625	0	-	0.428571	(0.42,0.455]	chr1	128778	12	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	69	2	2.78484	3.02407	3.2633	6.04692e-5	4.36674e-5	0.00131458	9.18809e-4
chr3	184317716	184317816	3949149	0	+	0.59	(0.53,0.59]	chr3	332386	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000455679.5:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	45	2	2.86102	3.024045	3.18707	0.0017805	3.55681e-4	0.0172974	0.00539248
chr1	51787714	51787789	191693	0	+	0.4	(0.39,0.42]	chr1	24577	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.38313	3.0239000000000003	3.66467	0.0128066	3.60066e-4	0.0725185	0.00544157
chrX	12976811	12976894	18584860	0	+	0.409639	(0.39,0.42]	chrX	1587310	1	UTR3	UTR3:EXON_MRNA	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.50896	3.023775	4.53859	0.052263	1.40716e-6	0.194473	5.32869e-5
chr8	11843404	11843502	9699189	0	-	0.459184	(0.455,0.49]	chr8	734802	10	UTR3	UTR3:EXON_MRNA:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.23479	3.02377	3.81275	0.0209335	0.0138827	0.101282	0.0760883
chr14	96855223	96855289	14477735	0	+	0.409091	(0.39,0.42]	chr14	1131014	1	CDS	CDS:UTR3:EXON_MRNA	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	1.79377	3.0237600000000002	4.25375	0.0299302	1.03195e-5	0.129773	2.84226e-4
chr1	28017153	28017239	911718	0	-	0.453488	(0.42,0.455]	chr1	95367	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	2.88512	3.023675	3.16223	4.45084e-4	5.95335e-5	0.00633715	0.00119321
chr12	102118418	102118518	13508583	0	-	0.41	(0.39,0.42]	chr12	1061988	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000251074.5:ENST00000551744.2:ENST00000551200.5:ENST00000543021.5:ENST00000548994.1:ENST00000550459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.71912	3.0236150000000004	3.32811	0.0163125	0.00182819	0.0866586	0.0183913
chr5	88205809	88205909	6685315	0	-	0.4	(0.39,0.42]	chr5	515505	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.71912	3.0236150000000004	3.32811	0.0163125	0.00182819	0.0866586	0.0183913
chr2	48379097	48379196	1789006	0	+	0.343434	(0.33,0.36]	chr2	172754	38	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.16	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.47163	3.02361	3.57559	0.0262108	0.0129725	0.117079	0.0724783
chr1	219978632	219978719	1510766	0	-	0.402299	(0.39,0.42]	chr1	150976	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	2.74243	3.023575	3.30472	0.00369167	8.54292e-6	0.030936	2.41736e-4
chr3	5178663	5178723	3278244	0	+	0.383333	(0.36,0.39]	chr3	288771	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1:ENST00000476343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	3.02315	3.02356	3.02397	0.00674398	8.65481e-4	0.0461258	0.0100741
chr8	26370708	26370807	9238349	0	+	0.373737	(0.36,0.39]	chr8	707539	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000665751.1:ENST00000517754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	26	2	3.02315	3.02356	3.02397	0.00674398	8.65481e-4	0.0461258	0.0100741
chr11	14505033	14505112	12282052	0	-	0.417722	(0.39,0.42]	chr11	949694	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	83	2	2.5823	3.023245	3.46419	0.00246531	2.88805e-7	0.0230262	1.385e-5
chr19	49098426	49098491	17368561	0	+	0.569231	(0.53,0.59]	chr19	1442404	1	CDS	CDS:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.22207	3.0230699999999997	3.82407	0.0179666	0.00910511	0.0918323	0.0576716
chr22	19792471	19792560	18296218	0	+	0.539326	(0.53,0.59]	chr22	1552954	3	EXON_PSEUDO	EXON_PSEUDO	AC000089.3	ENSG00000235776.2	ENST00000424559.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	25	2	2.22207	3.0230699999999997	3.82407	0.0179666	0.00910511	0.0918323	0.0576716
chr8	127738362	127738462	9612651	0	+	0.69	(0.59,1]	chr8	728488	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	67	2	2.33806	3.02306	3.70806	0.00632881	5.14321e-4	0.0448545	0.00719062
chr19	11030800	11030871	17229337	0	+	0.605634	(0.59,1]	chr19	1419445	2	CDS	CDS:UTR3:EXON_MRNA	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	1.81066	3.0229799999999996	4.2353	0.0369806	0.0165254	0.145401	0.0873033
chr6	52403505	52403601	7177645	0	+	0.604167	(0.59,1]	chr6	555098	3	CDS	CDS:EXON_MRNA:INTRON	PAQR8:EFHC1	ENSG00000170915.9:ENSG00000096093.16	ENST00000512121.1:ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000442253.3:ENST00000491749.2:ENST00000360726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.81066	3.0229799999999996	4.2353	0.0369806	0.0165254	0.145401	0.0873033
chr11	57712718	57712807	11952151	0	+	0.617977	(0.59,1]	chr11	914713	1	CDS	CDS:EXON_MRNA	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000524972.5:ENST00000378312.8:ENST00000530114.5:ENST00000525035.5:ENST00000529403.1:ENST00000528110.5:ENST00000533602.5:ENST00000528042.1:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.9891200000000002	3.02293	3.05674	0.00823979	9.4094e-4	0.0540283	0.0106352
chr11	82689698	82689768	12039468	0	+	0.671429	(0.59,1]	chr11	928339	3	EXON_PSEUDO	EXON_PSEUDO	RPS28P7	ENSG00000227097.5	ENST00000473748.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	76	2	2.67996	3.0229299999999997	3.3659	0.00470478	2.1483e-4	0.0363963	0.00332687
chr1	193069250	193069346	630997	0	+	0.416667	(0.39,0.42]	chr1	64101	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1:ENST00000512587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.99507	3.022685	3.0503	0.00637824	0.00570576	0.0449937	0.0424438
chr7	93195827	93195901	8927679	0	-	0.418919	(0.39,0.42]	chr7	681259	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2:ENST00000492616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.99507	3.022685	3.0503	0.00637824	0.00570576	0.0449937	0.0424438
chr2	10345050	10345150	1630311	0	+	0.48	(0.455,0.49]	chr2	161786	145	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	2.18128	3.02243	3.86358	0.0111696	5.11066e-6	0.0665375	1.72955e-4
chr6	118900823	118900881	7358638	0	+	0.431034	(0.42,0.455]	chr6	565254	2	CDS	CDS:EXON_MRNA	ASF1A	ENSG00000111875.8	ENST00000229595.6:ENST00000511766.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.34191	3.0223199999999997	3.70273	0.0215502	0.0159091	0.102904	0.0854674
chr11	32933139	32933239	11899058	0	+	0.45	(0.42,0.455]	chr11	909001	15	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	111	2	2.28012	3.02229	3.76446	4.08245e-4	6.08943e-8	0.00600249	3.6541e-6
chr21	33524669	33524764	18220545	0	-	0.357895	(0.33,0.36]	chr21	1546376	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	26	2	2.57153	3.022265	3.473	0.00330025	8.77304e-4	0.028478	0.0101202
chr19	49803286	49803376	17372834	0	+	0.544444	(0.53,0.59]	chr19	1443744	1	CDS	CDS:UTR3:EXON_MRNA	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000359032.9:ENST00000597774.5:ENST00000600466.1:ENST00000594838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	2.65894	3.02216	3.38538	0.0193255	1.18366e-4	0.0943643	0.00207204
chr1	54226830	54226930	1028123	0	-	0.41	(0.39,0.42]	chr1	106759	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	24	2	2.10425	3.022105	3.93996	0.00841622	0.00810106	0.054565	0.0528637
chr22	30338788	30338868	18469705	0	-	0.625	(0.59,1]	chr22	1575849	1	CDS	CDS:UTR3:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000444440.1:ENST00000485618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.77418	3.022105	3.27003	0.0160729	3.45884e-4	0.0860154	0.00486309
chrX	73827685	73827785	19113545	0	-	0.43	(0.42,0.455]	chrX	1626115	61	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2:ENST00000602587.5	lncRNA	lncRNA	lncRNA	lncRNA	31	237	2	2.42249	3.021485	3.62048	2.18241e-5	4.74271e-10	5.20547e-4	5.96761e-8
chr1	19243613	19243707	877404	0	-	0.553191	(0.53,0.59]	chr1	90529	1	CDS	CDS:UTR3:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000475079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	73	2	2.5766	3.02136	3.46612	8.34608e-4	1.16467e-5	0.00978328	3.43116e-4
chr17	81879318	81879417	16709745	0	-	0.494949	(0.49,0.53]	chr17	1377759	10	EXON_LNCRNA	EXON_LNCRNA	RP11-498C9.15	ENSG00000263731.1	ENST00000582866.1	lncRNA	lncRNA	lncRNA	lncRNA	3	30	2	2.60116	3.02133	3.4415	0.0056515	9.98297e-4	0.0422191	0.0111246
chr19	50406181	50406251	17376035	0	+	0.557143	(0.53,0.59]	chr19	1444466	1	CDS	CDS:EXON_MRNA	POLD1	ENSG00000062822.15	ENST00000600859.5:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000644560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.64837	3.0212649999999996	3.39416	0.0199467	0.00126006	0.0984041	0.013837
chr3	51985877	51985946	3476531	0	+	0.565217	(0.53,0.59]	chr3	303995	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABHD14A-ACY1:ACY1	ENSG00000114786.16:ENSG00000243989.9	ENST00000636085.1:ENST00000463721.5:ENST00000486081.6:ENST00000636646.1:ENST00000637778.1:ENST00000463937.1:ENST00000497128.1:ENST00000636942.1:ENST00000637696.1:ENST00000636089.1:ENST00000637130.1:ENST00000635951.1:ENST00000636826.1:ENST00000635946.1:ENST00000635937.1:ENST00000637563.1:ENST00000637025.1:ENST00000635952.1:ENST00000636718.1:ENST00000637222.1:ENST00000636490.1:ENST00000637978.1:ENST00000637730.1:ENST00000637512.1:ENST00000635785.1:ENST00000636660.1:ENST00000636264.1:ENST00000637461.1:ENST00000637209.1:ENST00000636880.1:ENST00000476351.5:ENST00000476854.5:ENST00000491318.5:ENST00000494103.5:ENST00000636556.1:ENST00000404366.7:ENST00000637349.1:ENST00000637460.1:ENST00000636358.2:ENST00000635797.1:ENST00000465121.5:ENST00000469863.1:ENST00000636047.1:ENST00000635941.1:ENST00000468068.1:ENST00000637251.1:ENST00000638136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	27	2	2.64837	3.0212649999999996	3.39416	0.0199467	0.00126006	0.0984041	0.013837
chr5	83054126	83054224	6673218	0	-	0.367347	(0.36,0.39]	chr5	515109	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.1437	3.021035	3.89837	0.0340515	9.25116e-5	0.141465	0.00169222
chr1	54047319	54047372	1027338	0	-	0.45283	(0.42,0.455]	chr1	106641	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.91373	3.0208399999999997	3.12795	0.00892357	1.0291e-4	0.0567495	0.00184556
chr12	67305899	67305999	12934065	0	+	0.45	(0.42,0.455]	chr12	1008094	9	CDS	CDS:EXON_MRNA:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	2.91373	3.0208399999999997	3.12795	0.00892357	1.0291e-4	0.0567495	0.00184556
chr19	17402938	17403035	17495783	0	-	0.453608	(0.42,0.455]	chr19	1467242	1	UTR3	UTR3:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	2.47621	3.0206749999999998	3.56514	0.00161397	3.86623e-5	0.0169243	8.37229e-4
chr12	6748179	6748271	13188350	0	-	0.565217	(0.53,0.59]	chr12	1032664	3	UTR3	UTR3:EXON_MRNA	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000435120.5	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	2.51629	3.02062	3.52495	5.70328e-4	5.15316e-5	0.00779621	0.00105223
chr6	33416624	33416697	7669547	0	-	0.520548	(0.49,0.53]	chr6	587668	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	63	2	2.99935	3.02058	3.04181	1.75203e-4	7.02135e-5	0.00306313	0.00135421
chr1	224385943	224386042	1526398	0	-	0.353535	(0.33,0.36]	chr1	152610	9	UTR3	UTR3:EXON_MRNA	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.47163	3.02056	3.56949	0.0129725	5.48184e-4	0.0724783	0.00697082
chr16	58021127	58021225	15687045	0	+	0.44898	(0.42,0.455]	chr16	1248296	10	UTR3	UTR3:EXON_MRNA	USB1	ENSG00000103005.12	ENST00000219281.8:ENST00000566082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.24157	3.02019	3.79881	0.0087798	1.65328e-4	0.0562439	0.0029267300000000002
chr8	21976355	21976438	9221819	0	+	0.433735	(0.42,0.455]	chr8	704943	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	2.24157	3.02019	3.79881	0.0087798	1.65328e-4	0.0562439	0.0029267300000000002
chr7	158731675	158731772	9159284	0	-	0.371134	(0.36,0.39]	chr7	699685	8	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.61529	3.0201599999999997	4.42503	0.0466766	0.00133228	0.171348	0.0144372
chr10	74114251	74114319	11117606	0	+	0.602941	(0.59,1]	chr10	846299	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	21	2	2.32455	3.020105	3.71566	0.0520547	0.0487443	0.193787	0.175495
chr11	34052279	34052349	11904984	0	+	0.771429	(0.59,1]	chr11	909476	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000526477.5:ENST00000534042.5:ENST00000534825.5:ENST00000532820.5:ENST00000530820.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	21	2	2.32455	3.020105	3.71566	0.0520547	0.0487443	0.193787	0.175495
chr16	2244405	2244478	15825110	0	-	0.60274	(0.59,1]	chr16	1262320	1	CDS	CDS:EXON_MRNA	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563447.1:ENST00000563029.5:ENST00000561688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.32455	3.020105	3.71566	0.0520547	0.0487443	0.193787	0.175495
chr17	44374353	44374411	16558007	0	-	0.655172	(0.59,1]	chr17	1359418	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ITGA2B	ENSG00000005961.19	ENST00000648408.1:ENST00000262407.6:ENST00000587295.5:ENST00000592462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.32455	3.020105	3.71566	0.0520547	0.0487443	0.193787	0.175495
chr19	1250396	1250462	17192072	0	+	0.742424	(0.59,1]	chr19	1411847	1	CDS	CDS:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000586757.5:ENST00000682408.1:ENST00000591446.6	protein_coding	protein_coding	protein_coding	protein_coding	1	21	2	2.32455	3.020105	3.71566	0.0520547	0.0487443	0.193787	0.175495
chr19	48799980	48800040	17603717	0	-	0.666667	(0.59,1]	chr19	1483235	1	CDS	CDS:EXON_MRNA	BCAT2	ENSG00000105552.15	ENST00000545387.6:ENST00000316273.11:ENST00000402551.5:ENST00000593515.5:ENST00000597011.5:ENST00000599246.5:ENST00000598162.5:ENST00000595376.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	21	2	2.32455	3.020105	3.71566	0.0520547	0.0487443	0.193787	0.175495
chr5	10381871	10381943	5874983	0	+	0.416667	(0.39,0.42]	chr5	461923	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	54	2	2.91757	3.019955	3.12234	1.28898e-4	1.19356e-4	0.0024153	0.00208353
chr5	112976778	112976855	6153506	0	+	0.701299	(0.59,1]	chr5	480658	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000510046.1:ENST00000389063.3:ENST00000674880.1:ENST00000504961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	2.80637	3.0199249999999997	3.23348	0.00352837	0.00274489	0.0298518	0.0238522
chr12	54252040	54252133	13343050	0	-	0.354839	(0.33,0.36]	chr12	1049616	1	CDS	CDS:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6:ENST00000547872.1:ENST00000550411.5:ENST00000552562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.47163	3.019905	3.56818	0.0129725	3.90735e-5	0.0724783	8.43777e-4
chr1	186322517	186322586	1411807	0	-	0.521739	(0.49,0.53]	chr1	142800	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000467810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.92082	3.01987	3.11892	0.00827037	0.00398244	0.0534766	0.0322851
chr20	50583686	50583783	17816219	0	+	0.525773	(0.49,0.53]	chr20	1507152	11	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.92082	3.01987	3.11892	0.00827037	0.00398244	0.0534766	0.0322851
chr1	40771290	40771383	155588	0	+	0.505376	(0.49,0.53]	chr1	19530	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NFYC	ENSG00000066136.20	ENST00000447388.7:ENST00000456393.6:ENST00000372652.5:ENST00000308733.9:ENST00000414185.1:ENST00000496608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.99849	3.01978	3.04107	0.00630123	0.00533879	0.0445415	0.0392268
chr12	6514264	6514328	12713363	0	+	0.5	(0.49,0.53]	chr12	986530	1	CDS	CDS:UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000545732.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.99849	3.01978	3.04107	0.00630123	0.00533879	0.0445415	0.0392268
chr2	96887552	96887652	2792470	0	-	0.52	(0.49,0.53]	chr2	249295	87	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	2.99849	3.01978	3.04107	0.00630123	0.00533879	0.0445415	0.0392268
chr7	24688810	24688909	8181811	0	+	0.525253	(0.49,0.53]	chr7	624342	13	UTR3	UTR3:EXON_MRNA	MPP6	ENSG00000105926.16	ENST00000222644.10:ENST00000396475.6	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.99849	3.01978	3.04107	0.00630123	0.00533879	0.0445415	0.0392268
chr1	207761248	207761347	689877	0	+	0.333333	(0.33,0.36]	chr1	70073	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000464082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	35	204	2	2.84473	3.0197000000000003	3.19467	4.40021e-7	1.77251e-8	1.98957e-5	1.38455e-6
chr9	101390269	101390367	10774668	0	-	0.295918	(0.29,0.33]	chr9	815645	28	UTR3	UTR3:EXON_MRNA	MRPL50	ENSG00000136897.8	ENST00000374865.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.48886	3.019675	3.55049	0.0055888	6.15323e-4	0.0419759	0.00765848
chr1	9614378	9614478	34800	0	+	0.5	(0.49,0.53]	chr1	4057	14	UTR3	UTR3:EXON_MRNA	TMEM201	ENSG00000188807.13	ENST00000340381.11:ENST00000416541.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr1	43694708	43694801	166594	0	+	0.526882	(0.49,0.53]	chr1	21489	1	CDS	CDS:UTR3:EXON_MRNA	RP11-7O11.7:KDM4A	ENSG00000284989.1:ENSG00000066135.13	ENST00000645057.1:ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr14	69461800	69461898	14373491	0	+	0.510204	(0.49,0.53]	chr14	1123183	2	UTR3	UTR3:EXON_MRNA	SLC39A9	ENSG00000029364.12	ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000555840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr15	42160166	42160264	15238302	0	-	0.520408	(0.49,0.53]	chr15	1200036	16	UTR3	UTR3:EXON_MRNA	VPS39	ENSG00000166887.16	ENST00000318006.10:ENST00000614932.1:ENST00000562258.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr19	28466495	28466590	17525478	0	-	0.505263	(0.49,0.53]	chr19	1470935	2	EXON_LNCRNA	EXON_LNCRNA	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5:ENST00000585697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr2	9505165	9505265	2507609	0	-	0.53	(0.49,0.53]	chr2	226252	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1:ENST00000649227.1:ENST00000648857.1:ENST00000647979.1:ENST00000647610.1:ENST00000650116.1:ENST00000649686.1:ENST00000649068.1:ENST00000647622.1:ENST00000649972.1:ENST00000650241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr2	107746842	107746941	2831638	0	-	0.525253	(0.49,0.53]	chr2	252408	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01885:RP11-534J18.1	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr20	33707705	33707805	17945332	0	-	0.5	(0.49,0.53]	chr20	1519796	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PXMP4	ENSG00000101417.12	ENST00000409299.8:ENST00000344022.7:ENST00000217398.3	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr20	34928629	34928728	17950027	0	-	0.494949	(0.49,0.53]	chr20	1520320	3	UTR3	UTR3:EXON_MRNA	GSS	ENSG00000100983.12	ENST00000651619.1:ENST00000646735.1:ENST00000646405.1:ENST00000642498.1:ENST00000643908.1:ENST00000645723.1:ENST00000643188.1:ENST00000644793.1:ENST00000646512.1:ENST00000645328.1:ENST00000643502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr22	36525998	36526021	18499762	0	-	0.521739	(0.49,0.53]	chr22	1578473	1	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5:ENST00000457241.5:ENST00000432675.4:ENST00000402116.2:ENST00000496875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr3	39094935	39095032	3422802	0	+	0.515464	(0.49,0.53]	chr3	297713	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WDR48	ENSG00000114742.14	ENST00000302313.10:ENST00000413099.6:ENST00000420940.6:ENST00000466405.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr3	48632973	48633028	4168939	0	-	0.527273	(0.49,0.53]	chr3	349692	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC26A6	ENSG00000225697.13	ENST00000420764.6:ENST00000395550.7:ENST00000337000.12:ENST00000307364.10:ENST00000383733.7:ENST00000489483.5:ENST00000358747.10:ENST00000480524.5:ENST00000455886.6:ENST00000482282.5:ENST00000431213.5:ENST00000431739.5:ENST00000426599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr6	157208538	157208635	7511272	0	+	0.505155	(0.49,0.53]	chr6	573395	1	UTR3	UTR3:EXON_MRNA	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000414678.7:ENST00000635849.1:ENST00000637904.1:ENST00000637015.1:ENST00000636940.1:ENST00000636227.1:ENST00000636254.1:ENST00000637933.1:ENST00000635928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr7	102250440	102250540	8437577	0	+	0.52	(0.49,0.53]	chr7	644430	15	UTR3	UTR3:EXON_MRNA:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.3044	3.0196699999999996	3.73494	0.0509448	0.0189345	0.181793	0.0934721
chr8	30105762	30105862	9252522	0	+	0.45	(0.42,0.455]	chr8	708865	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5:ENST00000518192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	2.61608	3.01959	3.4231	0.00112541	6.89843e-4	0.0128481	0.00842607
chr5	75356395	75356448	6037121	0	+	0.509434	(0.49,0.53]	chr5	473646	2	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000508070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	2.49797	3.019575	3.54118	0.00843736	4.50577e-5	0.0546021	9.4221e-4
chrX	154429119	154429191	18917838	0	+	0.680556	(0.59,1]	chrX	1611890	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000422890.5:ENST00000449556.5:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000446552.1:ENST00000455205.5:ENST00000429585.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.97653	3.019555	3.06258	0.00616167	0.00142722	0.0438642	0.0153442
chr9	112041047	112041136	10801491	0	-	0.337079	(0.33,0.36]	chr9	818287	4	UTR3	UTR3:EXON_MRNA	SUSD1	ENSG00000106868.17	ENST00000374270.8:ENST00000374263.7:ENST00000355396.7:ENST00000374264.6:ENST00000475283.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.69981	3.019385	4.33896	0.0370662	0.00182033	0.145667	0.0183913
chr19	1104043	1104127	17191424	0	+	0.72619	(0.59,1]	chr19	1411710	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	GPX4	ENSG00000167468.18	ENST00000616066.4:ENST00000354171.13:ENST00000589115.6:ENST00000611653.4:ENST00000593032.5:ENST00000588919.5	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.91328	3.018815	3.12435	5.13816e-4	1.94602e-4	0.00665221	0.00332928
chr12	53382581	53382676	12885890	0	+	0.505263	(0.49,0.53]	chr12	1002309	6	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2:ENST00000548560.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.30264	3.01879	3.73494	0.0189345	0.0165402	0.0934721	0.087611
chr21	33504411	33504469	18220329	0	-	0.517241	(0.49,0.53]	chr21	1546322	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.30264	3.01879	3.73494	0.0189345	0.0165402	0.0934721	0.087611
chr21	44859662	44859762	18277512	0	-	0.52	(0.49,0.53]	chr21	1550266	29	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	2.30264	3.01879	3.73494	0.0189345	0.0165402	0.0934721	0.087611
chr3	47417690	47417787	4160708	0	-	0.680412	(0.59,1]	chr3	348107	5	CDS	CDS:UTR3:EXON_MRNA	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.5215	3.01879	3.51608	0.032241	0.00108676	0.135671	0.0118659
chr6	85640445	85640504	7826066	0	-	0.423729	(0.42,0.455]	chr6	599605	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	2.33282	3.018665	3.70451	0.00677333	2.72131e-4	0.0462932	0.00404713
chr1	111456167	111456249	407304	0	+	0.365854	(0.36,0.39]	chr1	40175	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	2.63702	3.0183150000000003	3.39961	0.00212882	1.76848e-5	0.0206577	4.41339e-4
chr6	24706037	24706136	7638783	0	-	0.343434	(0.33,0.36]	chr6	581798	13	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	8	52	2	2.50997	3.018155	3.52634	9.74806e-4	7.28639e-6	0.0116117	2.13219e-4
chr7	100099139	100099203	8949693	0	-	0.5625	(0.53,0.59]	chr7	683551	2	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	67	2	2.55633	3.0181199999999997	3.47991	4.55091e-4	6.7738e-5	0.006455	0.0013157
chr2	85327096	85327194	2770184	0	-	0.602041	(0.59,1]	chr2	245656	7	CDS	CDS:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.19052	3.018045	3.84557	0.0410704	0.0237927	0.163285	0.109413
chr6	31691803	31691860	7661773	0	-	0.666667	(0.59,1]	chr6	585002	1	CDS	CDS:UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000498420.5:ENST00000496579.5:ENST00000492899.1:ENST00000477462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.19052	3.018045	3.84557	0.0410704	0.0237927	0.163285	0.109413
chr12	885030	885126	12681420	0	+	0.447917	(0.42,0.455]	chr12	984118	5	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	114	2	2.79242	3.017995	3.24357	7.18471e-6	4.64819e-6	2.11137e-4	1.61169e-4
chr5	10434571	10434669	5875543	0	+	0.397959	(0.39,0.42]	chr5	462061	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	72	2	2.48229	3.01795	3.55361	8.62602e-4	1.26646e-6	0.0105966	4.89488e-5
chr11	68530442	68530541	12000201	0	+	0.40404	(0.39,0.42]	chr11	923703	74	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.70591	3.017855	3.3298	0.0185716	0.00165391	0.0932453	0.0163614
chr2	47808117	47808217	2633995	0	-	0.4	(0.39,0.42]	chr2	237042	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000434234.5:ENST00000405808.5:ENST00000684712.1:ENST00000682451.1:ENST00000465204.5:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000684523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.70591	3.017855	3.3298	0.0185716	0.00165391	0.0932453	0.0163614
chr4	73076131	73076230	5465965	0	-	0.393939	(0.39,0.42]	chr4	437721	29	UTR3	UTR3:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.70591	3.017855	3.3298	0.0185716	0.00165391	0.0932453	0.0163614
chr5	96784001	96784080	6721179	0	-	0.405063	(0.39,0.42]	chr5	517412	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000514604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.70591	3.017855	3.3298	0.0185716	0.00165391	0.0932453	0.0163614
chr5	131315975	131316059	6220984	0	+	0.392857	(0.39,0.42]	chr5	484057	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000502840.5:ENST00000511432.5:ENST00000506419.5:ENST00000395246.5:ENST00000505065.2:ENST00000504701.5:ENST00000503291.5:ENST00000360515.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.70591	3.017855	3.3298	0.0185716	0.00165391	0.0932453	0.0163614
chr11	117163830	117163892	12154301	0	+	0.451613	(0.42,0.455]	chr11	936181	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1:ENST00000533206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	20	2	2.33282	3.017775	3.70273	0.0215502	0.00677333	0.102904	0.0462932
chr5	69364842	69364942	6625896	0	-	0.33	(0.29,0.33]	chr5	511947	2	UTR3	UTR3:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.27411	3.017775	3.76144	0.00686811	1.09291e-5	0.0468903	2.96269e-4
chr5	133991001	133991077	6843462	0	-	0.460526	(0.455,0.49]	chr5	523597	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	54	2	2.54243	3.0177449999999997	3.49306	5.34358e-4	6.07633e-5	0.00743689	0.00121305
chr1	182383024	182383122	1401206	0	-	0.346939	(0.33,0.36]	chr1	141690	51	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	71	402	2	2.81451	3.01762	3.22073	1.21806e-7	3.1801e-10	6.64207e-6	4.2067e-8
chr14	23139423	23139523	14529648	0	-	0.55	(0.53,0.59]	chr14	1138675	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4:ENST00000532568.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	75	2	2.15403	3.0176	3.88117	0.0118065	5.52702e-7	0.0686664	2.41518e-5
chr10	73053350	73053430	11568701	0	-	0.425	(0.42,0.455]	chr10	880493	1	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	21	194	2	2.57995	3.01759	3.45523	1.34785e-4	4.37548e-9	0.00249848	3.79596e-7
chr22	21920315	21920415	18443453	0	-	0.55	(0.53,0.59]	chr22	1572559	10	UTR3	UTR3:EXON_MRNA	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	1.87133	3.0175799999999997	4.16383	0.0308819	0.00659193	0.130016	0.0454205
chr22	31956513	31956602	18351651	0	+	0.539326	(0.53,0.59]	chr22	1560134	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000479649.1:ENST00000471374.1:ENST00000420430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.35511	3.01752	3.67993	0.0445399	3.22778e-4	0.172163	0.0046122
chr21	39342513	39342612	18257062	0	-	0.414141	(0.39,0.42]	chr21	1548152	3	UTR3	UTR3:EXON_MRNA	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	129	2	2.74734	3.0172600000000003	3.28718	2.68223e-5	1.6756e-7	6.85567e-4	8.73301e-6
chr15	90476740	90476818	15100536	0	+	0.435897	(0.42,0.455]	chr15	1188148	2	CDS	CDS:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.57051	3.0170000000000003	3.46349	0.0265466	9.0025e-4	0.120071	0.0102618
chr5	175527413	175527510	6397798	0	+	0.216495	[0,0.29]	chr5	496826	8	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.80134	3.01694	3.23254	0.0049344	1.59908e-5	0.0379087	4.06478e-4
chr18	8914475	8914575	16750702	0	+	0.36	(0.33,0.36]	chr18	1381314	1	SS5_PROX	SS5_PROX:INTRON	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	3	15	2	2.00765	3.01684	4.02603	0.0287001	0.0071776	0.128757	0.048188
chr1	224418259	224418337	1526735	0	-	0.358974	(0.33,0.36]	chr1	152668	1	CDS	CDS:UTR3:EXON_MRNA	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000486652.5:ENST00000678555.1:ENST00000443112.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.78095	3.016835	3.25272	0.00388614	2.63256e-4	0.0322851	0.00393206
chr8	127736512	127736593	9612630	0	+	0.592593	(0.59,1]	chr8	728477	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000641036.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.42324	3.0167349999999997	3.61023	0.0116918	7.25496e-4	0.0686664	0.00869086
chr12	51242552	51242652	12876227	0	+	0.41	(0.39,0.42]	chr12	1000616	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	75	2	2.63229	3.0166649999999997	3.40104	7.8066e-4	1.30446e-6	0.00973486	5.01269e-5
chr6	139372941	139373036	7995332	0	-	0.273684	[0,0.29]	chr6	611348	13	UTR3	UTR3:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.15488	3.016615	3.87835	0.0436536	1.0775e-4	0.170594	0.00192514
chr12	68713729	68713808	12939998	0	+	0.443038	(0.42,0.455]	chr12	1008422	1	CDS	CDS:UTR3:EXON_MRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000537662.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.50649	3.01654	3.52659	0.0302857	6.87022e-4	0.130016	0.00876781
chr2	63595422	63595455	1850018	0	+	0.454545	(0.42,0.455]	chr2	175409	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000436321.5:ENST00000454035.5:ENST00000472098.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.50649	3.01654	3.52659	0.0302857	6.87022e-4	0.130016	0.00876781
chrX	20154898	20154997	18985627	0	-	0.333333	(0.33,0.36]	chrX	1616690	51	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000457145.6:ENST00000643073.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.28792	3.01647	3.74502	0.0239159	2.19782e-4	0.112531	0.00339463
chr15	68086483	68086572	14993966	0	+	0.47191	(0.455,0.49]	chr15	1178656	3	CDS	CDS:UTR3:EXON_MRNA	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	42	2	1.93369	3.016445	4.0992	0.00999269	2.73975e-5	0.0620664	6.95757e-4
chr1	23559426	23559501	896532	0	-	0.546667	(0.53,0.59]	chr1	93163	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ID3	ENSG00000117318.9	ENST00000374561.6:ENST00000486541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.0289	3.0164150000000003	4.00393	0.0373899	0.0108084	0.146698	0.064368
chr12	24811719	24811819	13255673	0	-	0.32	(0.29,0.33]	chr12	1038842	18	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.85656	3.0164150000000003	3.17627	9.79425e-4	8.41464e-5	0.0116574	0.00158584
chr12	54396010	54396104	13343711	0	-	0.553191	(0.53,0.59]	chr12	1049741	9	UTR3	UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000547197.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.0289	3.0164150000000003	4.00393	0.0373899	0.0108084	0.146698	0.064368
chr13	95083214	95083290	14110005	0	-	0.539474	(0.53,0.59]	chr13	1104360	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.0289	3.0164150000000003	4.00393	0.0373899	0.0108084	0.146698	0.064368
chr16	69742431	69742516	15995045	0	-	0.564706	(0.53,0.59]	chr16	1284253	1	CDS	CDS:EXON_MRNA	NOB1	ENSG00000141101.13	ENST00000268802.10	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.0289	3.0164150000000003	4.00393	0.0373899	0.0108084	0.146698	0.064368
chr22	43174498	43174556	18527937	0	-	0.551724	(0.53,0.59]	chr22	1582370	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484118.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.0289	3.0164150000000003	4.00393	0.0373899	0.0108084	0.146698	0.064368
chr19	1395488	1395538	17192964	0	+	0.84	(0.59,1]	chr19	1412119	1	UTR3	UTR3:EXON_MRNA	NDUFS7	ENSG00000115286.20	ENST00000545446.5:ENST00000543289.5:ENST00000539480.5:ENST00000313408.11:ENST00000233627.14:ENST00000534853.5:ENST00000620479.4:ENST00000546172.7:ENST00000622587.4:ENST00000540530.5:ENST00000535382.1:ENST00000591358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	2.0452	3.016355	3.98751	0.0301044	0.0179494	0.129773	0.0939469
chr8	143921013	143921111	10146685	0	-	0.55102	(0.53,0.59]	chr8	763001	49	CDS	CDS:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8:ENST00000527096.5	protein_coding	protein_coding	protein_coding	protein_coding	1	15	2	2.65894	3.01612	3.3733	0.0529193	0.0193255	0.18423900000000001	0.0943643
chr1	13779103	13779201	52836	0	+	0.44898	(0.42,0.455]	chr1	7067	8	CDS	CDS:EXON_MRNA:INTRON	PRDM2	ENSG00000116731.22	ENST00000376048.9:ENST00000235372.11:ENST00000311066.9:ENST00000491134.5:ENST00000413440.5:ENST00000343137.8:ENST00000503842.5:ENST00000505823.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.57051	3.0161	3.46169	0.03884	0.0265466	0.149227	0.120071
chr3	143058836	143058935	3793654	0	+	0.444444	(0.42,0.455]	chr3	323977	25	UTR3	UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000473835.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.57051	3.0161	3.46169	0.03884	0.0265466	0.149227	0.120071
chr17	8207272	8207370	16432145	0	-	0.5	(0.49,0.53]	chr17	1340345	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5:ENST00000578549.5:ENST00000580998.5:ENST00000577833.5:ENST00000581511.5:ENST00000580390.5:ENST00000584561.1:ENST00000582368.5:ENST00000583915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.13501	3.015855	3.8967	0.0287874	0.0128791	0.128869	0.0725185
chr19	49660026	49660119	17607076	0	-	0.526882	(0.49,0.53]	chr19	1484111	2	SS3_PROX	SS3_PROX:INTRON	IRF3	ENSG00000126456.16	ENST00000599680.1:ENST00000377135.8:ENST00000377139.8:ENST00000601291.5:ENST00000596822.5:ENST00000600911.5:ENST00000309877.11:ENST00000597198.5:ENST00000597636.5:ENST00000596644.5:ENST00000599144.5:ENST00000593922.5:ENST00000596765.5:ENST00000599223.5:ENST00000600022.5:ENST00000598808.5:ENST00000596756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.13501	3.015855	3.8967	0.0287874	0.0128791	0.128869	0.0725185
chr1	32229134	32229212	127547	0	+	0.564103	(0.53,0.59]	chr1	15810	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3I	ENSG00000084623.12	ENST00000677701.1:ENST00000677760.1:ENST00000676801.1:ENST00000677772.1:ENST00000677202.1:ENST00000677844.1:ENST00000677711.1:ENST00000373586.2:ENST00000678689.1:ENST00000677676.1:ENST00000676679.1:ENST00000677198.1:ENST00000678150.1:ENST00000678063.1:ENST00000676554.1:ENST00000678968.1:ENST00000676998.1:ENST00000678842.1:ENST00000679290.1:ENST00000677378.1:ENST00000677640.1:ENST00000678534.1:ENST00000678889.1:ENST00000677767.1:ENST00000474371.2:ENST00000677540.1:ENST00000676837.1:ENST00000678420.1:ENST00000678162.1:ENST00000677183.1:ENST00000678711.1:ENST00000678883.1:ENST00000677353.1:ENST00000677053.1:ENST00000677580.1:ENST00000679270.1:ENST00000355082.10:ENST00000489353.6:ENST00000471486.6:ENST00000676957.1:ENST00000483517.5:ENST00000678306.1:ENST00000679044.1:ENST00000678106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	96	2	2.90213	3.0157800000000003	3.12943	4.81557e-4	8.3371e-6	0.00677016	2.37365e-4
chr12	68553092	68553191	13394542	0	-	0.535354	(0.53,0.59]	chr12	1055115	2	EXON_PSEUDO	EXON_PSEUDO	RPSAP12	ENSG00000240087.3	ENST00000435879.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	45	2	2.8006	3.015725	3.2308500000000002	0.00233666	2.81517e-4	0.0221314	0.00415519
chr20	34534627	34534711	17765519	0	+	0.571429	(0.53,0.59]	chr20	1500410	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ITCH:DYNLRB1	ENSG00000078747.16:ENSG00000125971.17	ENST00000664852.1:ENST00000480759.1:ENST00000357156.7:ENST00000374846.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	45	2	2.8006	3.015725	3.2308500000000002	0.00233666	2.81517e-4	0.0221314	0.00415519
chr11	838651	838743	11759171	0	+	0.652174	(0.59,1]	chr11	898603	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CD151	ENSG00000177697.19	ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000532045.6:ENST00000530726.5:ENST00000528011.2:ENST00000525181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.04362	3.015565	3.98751	0.036186	0.0301044	0.145024	0.129773
chrX	153794667	153794687	18916171	0	+	0.6	(0.59,1]	chrX	1611445	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSR4	ENSG00000180879.14	ENST00000320857.7:ENST00000491833.5:ENST00000370087.5:ENST00000482902.5:ENST00000460616.5:ENST00000370086.8:ENST00000370085.3:ENST00000471724.5:ENST00000471880.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.04362	3.015565	3.98751	0.036186	0.0301044	0.145024	0.129773
chr12	108646703	108646803	13530490	0	-	0.43	(0.42,0.455]	chr12	1063929	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	2.60504	3.0155399999999997	3.42604	0.00201537	1.46189e-5	0.0197874	3.76794e-4
chr5	179729443	179729543	6414468	0	+	0.47	(0.455,0.49]	chr5	499211	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	361	2	2.91751	3.015535	3.11356	1.27284e-7	1.15624e-8	7.74204e-6	8.777e-7
chr4	127812911	127813007	5638774	0	-	0.385417	(0.36,0.39]	chr4	449188	3	EXON_PSEUDO	EXON_PSEUDO	RP11-50D9.1	ENSG00000244021.4	ENST00000491435.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.44447	3.0154199999999998	3.58637	0.0364669	5.84377e-4	0.145024	0.00793559
chr3	134352025	134352113	4465124	0	-	0.431818	(0.42,0.455]	chr3	371061	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL39P5	ENSG00000214289.2	ENST00000273411.2:ENST00000512505.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	51	2	2.90284	3.015395	3.12795	4.27478e-4	1.0291e-4	0.00618684	0.00184556
chr5	57169107	57169158	6589693	0	-	0.45098	(0.42,0.455]	chr5	510209	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000207293.1	ENST00000384563.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	4	33	2	2.15137	3.015295	3.87922	0.0123864	1.04705e-4	0.07101	0.0020295
chr1	247159749	247159813	1603309	0	-	0.53125	(0.53,0.59]	chr1	159224	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	3.0099	3.0152200000000002	3.02054	0.00600486	0.00577011	0.042887	0.0426551
chr12	55968048	55968108	12896891	0	+	0.4	(0.39,0.42]	chr12	1003782	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000555357.1:ENST00000554619.5:ENST00000556276.5:ENST00000556656.5:ENST00000556146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.71912	3.01511	3.3111	0.0163125	2.11919e-4	0.0866586	0.00357806
chr1	32161946	32162046	126919	0	+	0.54	(0.53,0.59]	chr1	15600	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5:ENST00000469790.1:ENST00000446515.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	46	2	2.90978	3.01485	3.11992	0.00857883	1.09102e-4	0.0552386	0.00194222
chr1	36259381	36259432	141263	0	+	0.490196	(0.49,0.53]	chr1	17542	1	UTR5	UTR5:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	1.90685	3.0147399999999998	4.12263	0.0534351	0.00591451	0.184995	0.0427941
chr2	208242069	208242145	3142484	0	-	0.5	(0.49,0.53]	chr2	277700	2	CDS	CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	1.90685	3.0147399999999998	4.12263	0.0534351	0.00591451	0.184995	0.0427941
chr10	45988791	45988847	11026405	0	+	0.428571	(0.42,0.455]	chr10	839303	2	CDS	CDS:EXON_MRNA	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.7523	3.014685	3.27707	0.0153283	0.00207325	0.0828908	0.0194849
chr12	93487496	93487564	13019441	0	+	0.426471	(0.42,0.455]	chr12	1013480	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.7523	3.014685	3.27707	0.0153283	0.00207325	0.0828908	0.0194849
chr17	49828690	49828789	16260206	0	+	0.434343	(0.42,0.455]	chr17	1318079	13	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000424009.6:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.7523	3.014685	3.27707	0.0153283	0.00207325	0.0828908	0.0194849
chr17	66804924	66805023	16326767	0	+	0.444444	(0.42,0.455]	chr17	1324591	10	UTR3	UTR3:EXON_MRNA	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.7523	3.014685	3.27707	0.0153283	0.00207325	0.0828908	0.0194849
chr8	38210103	38210200	9292327	0	+	0.443299	(0.42,0.455]	chr8	710693	2	CDS	CDS:EXON_MRNA	BAG4	ENSG00000156735.11	ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.7523	3.014685	3.27707	0.0153283	0.00207325	0.0828908	0.0194849
chr17	17383466	17383557	16464543	0	-	0.472527	(0.455,0.49]	chr17	1344546	2	EXON_PSEUDO	EXON_PSEUDO	RPL13P12	ENSG00000215030.5	ENST00000392730.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	27	189	2	2.28314	3.01437	3.7456	4.62444e-5	3.41628e-9	9.60806e-4	3.34067e-7
chr11	32932241	32932340	11899049	0	+	0.393939	(0.39,0.42]	chr11	909001	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	2.19876	3.014245	3.82973	0.00372927	1.3728e-4	0.031224	0.00232973
chr19	14088133	14088227	17478309	0	-	0.521277	(0.49,0.53]	chr19	1464154	4	UTR3	UTR3:EXON_MRNA	SAMD1	ENSG00000141858.12	ENST00000533683.7	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.69746	3.0142249999999997	3.33099	0.00380414	1.59567e-4	0.0317723	0.00263091
chr1	156312130	156312221	1314056	0	-	0.516484	(0.49,0.53]	chr1	133417	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.9035	3.0142	4.1249	0.0295204	2.4461e-5	0.129773	5.72214e-4
chr18	56610974	56611074	17136254	0	-	0.32	(0.29,0.33]	chr18	1406933	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000589931.1:ENST00000586262.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.92065	3.01413	3.10761	0.0117842	6.03128e-4	0.0686664	0.00754033
chr3	197950884	197950935	3992948	0	+	0.313726	(0.29,0.33]	chr3	336596	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000496582.5:ENST00000429437.5:ENST00000442341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.92065	3.01413	3.10761	0.0117842	6.03128e-4	0.0686664	0.00754033
chr19	1599439	1599539	17419436	0	-	0.57	(0.53,0.59]	chr19	1452636	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	AC005943.2:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5:ENST00000585671.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	34	2	2.64475	3.01411	3.38347	0.00453071	0.00132446	0.0351187	0.0138834
chrX	120438561	120438660	19196145	0	-	0.333333	(0.33,0.36]	chrX	1631971	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	1.89957	3.013985	4.1284	0.0122916	0.00407303	0.0706701	0.0324137
chr11	18502485	18502577	12302756	0	-	0.543478	(0.53,0.59]	chr11	951490	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000543054.5:ENST00000543087.5:ENST00000544804.5:ENST00000438874.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	36	2	2.90978	3.013785	3.11779	0.00857883	5.11883e-4	0.0552386	0.00664583
chr11	34464104	34464169	11906266	0	+	0.553846	(0.53,0.59]	chr11	909820	1	CDS	CDS:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000530343.1:ENST00000525707.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.90978	3.013785	3.11779	0.00857883	5.11883e-4	0.0552386	0.00664583
chr19	10921945	10922039	17228530	0	+	0.585106	(0.53,0.59]	chr19	1419257	3	UTR3	UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000344150.8:ENST00000586221.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.63316	3.01366	3.39416	0.00474401	0.00126006	0.0361423	0.013837
chr1	160299182	160299264	1328778	0	-	0.5	(0.49,0.53]	chr1	136031	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000545284.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	2.50745	3.01363	3.51981	6.88328e-4	3.33735e-4	0.00876781	0.00472923
chr12	51243144	51243243	12876233	0	+	0.494949	(0.49,0.53]	chr12	1000617	6	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	2.50745	3.01363	3.51981	6.88328e-4	3.33735e-4	0.00876781	0.00472923
chr22	21763243	21763343	18442383	0	-	0.48	(0.455,0.49]	chr22	1572508	37	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	17	135	2	2.99822	3.0135899999999998	3.02896	1.25499e-5	6.73886e-7	3.63974e-4	2.85809e-5
chr5	140528467	140528562	6255120	0	+	0.484211	(0.455,0.49]	chr5	487634	4	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	2.04847	3.0135300000000003	3.97859	0.0192065	2.2191e-6	0.0943643	7.82023e-5
chr16	74621495	74621592	16032583	0	-	0.391753	(0.39,0.42]	chr16	1287407	2	UTR3	UTR3:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	2.79628	3.013425	3.23057	3.34829e-4	1.07309e-4	0.00509483	0.00191901
chr19	46787678	46787771	17595594	0	-	0.763441	(0.59,1]	chr19	1481428	4	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	14	227	2	2.50704	3.01342	3.5198	1.83576e-4	2.88727e-6	0.00296566	1.08116e-4
chr1	19104181	19104257	875900	0	-	0.447368	(0.42,0.455]	chr1	89977	2	CDS	CDS:UTR5:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.96788	3.013385	3.05889	0.00524205	0.00109784	0.0399155	0.0119666
chr5	149495462	149495561	6910246	0	-	0.50505	(0.49,0.53]	chr5	528470	26	UTR3	UTR3:EXON_MRNA	CSNK1A1:CTB-89H12.4	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	4	37	2	2.01464	3.013175	4.01171	0.0205094	4.88513e-5	0.0991175	0.00100497
chr11	8684717	8684745	11790608	0	+	0.535714	(0.53,0.59]	chr11	902652	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1:ENST00000530913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	49	2	2.37399	3.013095	3.6522	0.0126178	2.31822e-5	0.0717599	5.49766e-4
chr16	14435976	14436068	15861058	0	-	0.467391	(0.455,0.49]	chr16	1267182	4	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.66563	3.013065	3.3605	0.0043075	0.00147278	0.0334284	0.0157578
chr5	138507535	138507631	6861951	0	-	0.489583	(0.455,0.49]	chr5	525116	16	UTR3	UTR3:EXON_MRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.66563	3.013065	3.3605	0.0043075	0.00147278	0.0334284	0.0157578
chr20	35556032	35556129	17769464	0	+	0.546392	(0.53,0.59]	chr20	1501138	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ERGIC3	ENSG00000125991.20	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000640748.1:ENST00000413587.5:ENST00000496172.5:ENST00000482338.5:ENST00000465298.1:ENST00000475211.1:ENST00000442139.5:ENST00000451605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	64	2	1.83149	3.012995	4.1945	0.00570336	1.72205e-5	0.0415928	4.72777e-4
chr5	127552608	127552707	6205035	0	+	0.262626	[0,0.29]	chr5	483456	8	UTR3	UTR3:EXON_MRNA:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	11	64	2	2.91325	3.0129099999999998	3.11257	0.00120521	4.17288e-6	0.0134827	1.33295e-4
chr1	228458319	228458410	746382	0	+	0.615385	(0.59,1]	chr1	75784	2	CDS	CDS:EXON_MRNA	H2BU1	ENSG00000196890.4	ENST00000620438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.68392	3.012815	3.34171	0.0202468	0.00234977	0.0984041	0.0222173
chr15	72231172	72231265	15368327	0	-	0.72043	(0.59,1]	chr15	1214203	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000567118.5:ENST00000569857.5:ENST00000567087.5:ENST00000564276.1:ENST00000566809.1:ENST00000569050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	43	2	2.68392	3.012815	3.34171	0.0202468	0.00234977	0.0984041	0.0222173
chr10	95237924	95238024	11629775	0	-	0.51	(0.49,0.53]	chr10	885723	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000492511.1:ENST00000477757.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	2.72712	3.0126850000000003	3.29825	9.78408e-4	0.00019429700000000001	0.0109424	0.00332542
chr6	15246256	15246350	7064169	0	+	0.329787	(0.29,0.33]	chr6	540702	3	UTR5	UTR5:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.63813	3.0125349999999997	3.38694	0.00803229	2.05464e-5	0.0528968	4.97417e-4
chr1	40233724	40233822	152728	0	+	0.408163	(0.39,0.42]	chr1	19088	17	INTRON	INTRON	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.34349	3.012515	3.68154	0.0169272	3.05414e-4	0.0890655	0.00442973
chr1	204404735	204404832	1457423	0	-	0.443299	(0.42,0.455]	chr1	146819	15	UTR3	UTR3:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.94263	3.012225	3.08182	0.00766873	6.80627e-4	0.0503696	0.00876781
chr1	32037968	32038036	125807	0	+	0.514706	(0.49,0.53]	chr1	15448	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	63	2	2.9955	3.012205	3.02891	8.23332e-4	2.81012e-5	0.0102121	6.42183e-4
chr19	19433268	19433367	17263235	0	+	0.383838	(0.36,0.39]	chr19	1426313	49	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.84089	3.0121849999999997	3.18348	0.0128123	0.00310315	0.0719798	0.0263402
chr5	72295526	72295589	6632084	0	-	0.365079	(0.36,0.39]	chr5	512597	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000513900.5:ENST00000508863.6:ENST00000515404.5:ENST00000519143.5:ENST00000522404.5:ENST00000520285.5:ENST00000522095.1:ENST00000506957.1:ENST00000523654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.84089	3.0121849999999997	3.18348	0.0128123	0.00310315	0.0719798	0.0263402
chr6	65837669	65837761	7784003	0	-	0.380435	(0.36,0.39]	chr6	596208	9	EXON_PSEUDO	EXON_PSEUDO	ADH5P4	ENSG00000233859.2	ENST00000433151.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.84089	3.0121849999999997	3.18348	0.0128123	0.00310315	0.0719798	0.0263402
chrX	155941951	155942039	18924229	0	+	0.386364	(0.36,0.39]	chrX	1612668	1	CDS	CDS:UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11:ENST00000460621.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.84089	3.0121849999999997	3.18348	0.0128123	0.00310315	0.0719798	0.0263402
chr4	56459735	56459834	4848727	0	+	0.343434	(0.33,0.36]	chr4	399473	3	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	31	175	2	2.61597	3.012125	3.40828	2.9180900000000002e-06	1.67616e-8	1.09075e-4	1.21191e-6
chr5	151811199	151811298	6299838	0	+	0.414141	(0.39,0.42]	chr5	491960	58	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	2.50974	3.01206	3.51438	0.00123319	8.89542e-6	0.0131207	2.7461e-4
chr1	96447425	96447524	366401	0	+	0.373737	(0.36,0.39]	chr1	35865	6	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	37	2	2.32678	3.011945	3.69711	0.0193538	1.63058e-5	0.0943643	4.12921e-4
chrX	151408189	151408287	18909822	0	+	0.336735	(0.33,0.36]	chrX	1610139	33	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.7655	3.01185	3.2582	0.0175892	0.00230915	0.0918323	0.0211205
chr8	47888583	47888650	9816682	0	-	0.58209	(0.53,0.59]	chr8	742751	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.72478	3.011765	3.29875	0.00324675	0.00191422	0.0282494	0.018324
chr22	41528707	41528801	18381093	0	+	0.531915	(0.53,0.59]	chr22	1564637	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.56002	3.011755	3.46349	0.00634904	9.2216e-4	0.0446708	0.0104432
chr14	58794747	58794841	14315540	0	+	0.5	(0.49,0.53]	chr14	1119032	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01500:RP11-112J1.1	ENSG00000258583.7:ENSG00000213598.4	ENST00000648996.1:ENST00000480540.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	13	110	2	2.96683	3.0117149999999997	3.0566	8.11735e-6	7.9669e-6	2.49448e-4	2.32055e-4
chr1	222733408	222733508	724616	0	+	0.32	(0.29,0.33]	chr1	73180	8	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.81897	3.01132	3.20367	6.11481e-4	2.43076e-4	0.00818575	0.00367789
chrX	153954065	153954163	19275633	0	-	0.581633	(0.53,0.59]	chrX	1637914	1	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.54844	3.0113149999999997	3.47419	0.00663226	8.75273e-4	0.0461575	0.0106963
chr1	150814157	150814239	1290642	0	-	0.548781	(0.53,0.59]	chr1	128529	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.71318	3.011305	3.30943	0.00340745	0.0018255	0.0283456	0.0183913
chr10	102160726	102160817	11226662	0	+	0.549451	(0.53,0.59]	chr10	854863	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	2.90978	3.011265	3.11275	0.00857883	0.00407571	0.0552386	0.032143
chr17	28563430	28563522	16485802	0	-	0.532609	(0.53,0.59]	chr17	1347715	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000582615.6:ENST00000580968.5:ENST00000465444.5:ENST00000584080.5:ENST00000582721.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.90978	3.011265	3.11275	0.00857883	0.00407571	0.0552386	0.032143
chr3	12572296	12572373	3314675	0	+	0.532468	(0.53,0.59]	chr3	291622	4	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.90978	3.011265	3.11275	0.00857883	0.00407571	0.0552386	0.032143
chr3	33091095	33091192	4111913	0	-	0.42268	(0.42,0.455]	chr3	343554	8	UTR3	UTR3:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	2.91373	3.011235	3.10874	0.00892357	5.40397e-4	0.0567495	0.00688813
chr7	76066310	76066410	8342406	0	+	0.51	(0.49,0.53]	chr7	636261	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding	14	127	2	2.76018	3.0111749999999997	3.26217	1.35342e-4	2.27041e-7	0.0025037	1.1289e-5
chr21	33558397	33558491	18101244	0	+	0.351064	(0.33,0.36]	chr21	1534538	10	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.6995	3.0111	3.3227	0.017838	0.00222616	0.0934844	0.0211992
chr8	109289841	109289933	10009004	0	-	0.347826	(0.33,0.36]	chr8	754421	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000679027.1:ENST00000678094.1:ENST00000519607.5:ENST00000427660.6:ENST00000676569.1:ENST00000677737.1:ENST00000521439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.6995	3.0111	3.3227	0.017838	0.00222616	0.0934844	0.0211992
chrX	119616273	119616365	19191980	0	-	0.347826	(0.33,0.36]	chrX	1631517	7	UTR3	UTR3:EXON_MRNA	SEPTIN6	ENSG00000125354.24	ENST00000360156.11	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.6995	3.0111	3.3227	0.017838	0.00222616	0.0934844	0.0211992
chr11	14457584	14457664	12281544	0	-	0.3	(0.29,0.33]	chr11	949564	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000532088.1:ENST00000525214.1:ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	59	2	2.27411	3.01107	3.74803	0.00686811	2.45771e-7	0.0468903	1.20887e-5
chr1	150470659	150470758	467999	0	+	0.414141	(0.39,0.42]	chr1	47283	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.69374	3.0109250000000003	3.32811	0.00386013	0.00182819	0.0310764	0.0183913
chr4	75790719	75790797	4892906	0	+	0.358974	(0.33,0.36]	chr4	403039	2	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.63456	3.0109250000000003	3.38729	0.00707461	1.20567e-4	0.0478528	0.00210079
chr7	44468222	44468304	8260282	0	+	0.560976	(0.53,0.59]	chr7	629216	5	EXON_PSEUDO	EXON_PSEUDO	RPL32P18	ENSG00000146677.7	ENST00000487895.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	37	2	2.0404	3.0107749999999998	3.98115	0.0362529	6.28226e-5	0.148525	0.00124286
chr5	179729343	179729443	6414467	0	+	0.51	(0.49,0.53]	chr5	499211	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	243	2	2.94012	3.0105649999999997	3.08101	1.02112e-6	1.3846e-7	4.50539e-5	7.39873e-6
chr3	195785043	195785143	4661117	0	-	0.56	(0.53,0.59]	chr3	385270	64	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	2.62668	3.01042	3.39416	0.00157636	0.00126006	0.015761	0.013837
chr1	203700268	203700331	669461	0	+	0.52381	(0.49,0.53]	chr1	67410	2	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.78308	3.010335	4.23759	0.0425234	0.00436474	0.167547	0.0335517
chr19	58393422	58393487	17412757	0	+	0.676923	(0.59,1]	chr19	1451036	2	CDS	CDS:EXON_MRNA	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	284	2	2.71499	3.010315	3.30564	2.54299e-5	5.78597e-6	5.89779e-4	1.91678e-4
chr18	31830559	31830656	17060765	0	-	0.340206	(0.33,0.36]	chr18	1402106	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582509.1:ENST00000582539.5:ENST00000581057.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.86073	3.0102450000000003	3.15976	0.0105608	0.00437542	0.0644466	0.0340502
chr20	56405874	56405971	17834536	0	+	0.340206	(0.33,0.36]	chr20	1507915	23	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.86073	3.0102450000000003	3.15976	0.0105608	0.00437542	0.0644466	0.0340502
chr13	33836573	33836665	13682636	0	+	0.336957	(0.33,0.36]	chr13	1078395	4	UTR3	UTR3:EXON_MRNA:INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	2.19355	3.010215	3.82688	0.00302788	6.67671e-6	0.026885	1.97539e-4
chr8	47798316	47798397	9815728	0	-	0.37037	(0.36,0.39]	chr8	742523	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.71443	3.01017	3.30591	5.60322e-4	1.89047e-4	0.00771955	0.003022
chr1	52384635	52384721	1018810	0	-	0.581395	(0.53,0.59]	chr1	105596	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.85636	3.0100949999999997	4.16383	0.0197135	0.00659193	0.0983378	0.0454205
chr15	34341884	34341967	15204804	0	-	0.53012	(0.53,0.59]	chr15	1196851	3	UTR3	UTR3:EXON_MRNA	NOP10	ENSG00000182117.6	ENST00000328848.6:ENST00000557912.1	protein_coding	protein_coding	protein_coding	protein_coding	11	109	2	2.96611	3.00989	3.05367	3.56173e-5	8.96417e-6	8.68085e-4	2.5207e-4
chr3	23811457	23811510	3357713	0	+	0.490566	(0.49,0.53]	chr3	294091	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	2.78962	3.00984	3.23006	0.0129044	0.00253719	0.0725185	0.0233955
chr7	92725625	92725709	8926106	0	-	0.52381	(0.49,0.53]	chr7	681173	1	CDS	CDS:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.78962	3.00984	3.23006	0.0129044	0.00253719	0.0725185	0.0233955
chr1	227317653	227317747	1537997	0	-	0.457447	(0.455,0.49]	chr1	153851	6	UTR5	UTR5:EXON_MRNA	CDC42BPA	ENSG00000143776.19	ENST00000366766.7:ENST00000366769.7:ENST00000334218.9:ENST00000366764.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr10	7319667	7319767	11360804	0	-	0.46	(0.455,0.49]	chr10	866306	245	INTRON	INTRON	SFMBT2	ENSG00000198879.13	ENST00000397167.6:ENST00000361972.8:ENST00000684547.1:ENST00000683762.1:ENST00000673876.1:ENST00000682896.1:ENST00000379713.8:ENST00000682101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr10	133362867	133362933	11754729	0	-	0.484848	(0.455,0.49]	chr10	897286	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ECHS1	ENSG00000127884.5	ENST00000368547.4	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr12	49004963	49005018	13322983	0	-	0.472727	(0.455,0.49]	chr12	1045349	1	CDS	CDS:UTR3:EXON_MRNA	RP11-386G11.12:PRKAG1	ENSG00000288710.1:ENSG00000181929.13	ENST00000683988.1:ENST00000548065.7:ENST00000316299.9:ENST00000547306.5:ENST00000546531.5:ENST00000552212.5:ENST00000551770.5:ENST00000551696.5:ENST00000550125.5:ENST00000552793.5:ENST00000548950.5:ENST00000549726.5:ENST00000551121.5:ENST00000550448.5:ENST00000552463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr17	31201036	31201097	16192881	0	+	0.459016	(0.455,0.49]	chr17	1307235	1	CDS	CDS:UTR3:EXON_MRNA	NF1	ENSG00000196712.18	ENST00000356175.7:ENST00000487476.5:ENST00000358273.9:ENST00000431387.8:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr20	56452754	56452848	17834955	0	+	0.478723	(0.455,0.49]	chr20	1507944	11	CDS	CDS:EXON_MRNA:INTRON	CASS4	ENSG00000087589.17	ENST00000360314.7:ENST00000679887.1:ENST00000434344.2:ENST00000497244.1:ENST00000679529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr6	12124673	12124773	7055541	0	+	0.49	(0.455,0.49]	chr6	540264	49	CDS	CDS:UTR5:EXON_MRNA:INTRON	HIVEP1	ENSG00000095951.17	ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr6	13977672	13977763	7063048	0	+	0.461538	(0.455,0.49]	chr6	540624	6	CDS	CDS:EXON_MRNA	RNF182	ENSG00000180537.13	ENST00000537663.5:ENST00000544682.5:ENST00000488300.6:ENST00000537388.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr6	157943616	157943714	7516755	0	+	0.459184	(0.455,0.49]	chr6	573600	9	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr7	35694419	35694508	8770195	0	-	0.483146	(0.455,0.49]	chr7	668889	2	UTR5	UTR5:EXON_MRNA	HERPUD2	ENSG00000122557.11	ENST00000311350.8:ENST00000396081.5:ENST00000438224.5:ENST00000413517.1:ENST00000427455.1:ENST00000603731.2	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr9	37886213	37886301	10257578	0	+	0.477273	(0.455,0.49]	chr9	772020	7	EXON_PSEUDO	EXON_PSEUDO	TMX2P1	ENSG00000213839.4	ENST00000436507.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	12	2	2.30139	3.009685	3.71798	0.0530131	0.0202679	0.195536	0.0984041
chr11	34134511	34134586	11905836	0	+	0.506667	(0.49,0.53]	chr11	909691	1	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.8671	3.0095850000000004	3.15207	0.0100489	0.00347189	0.0623334	0.0286293
chr16	28727020	28727095	15619251	0	+	0.52	(0.49,0.53]	chr16	1238311	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000564839.1:ENST00000566519.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	23	2	2.8671	3.0095850000000004	3.15207	0.0100489	0.00347189	0.0623334	0.0286293
chr7	44566001	44566079	8800094	0	-	0.525641	(0.49,0.53]	chr7	671265	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDX56	ENSG00000136271.11	ENST00000258772.10:ENST00000446987.5:ENST00000421223.5:ENST00000479602.5:ENST00000485367.5:ENST00000467318.5:ENST00000433257.5:ENST00000431640.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.8671	3.0095850000000004	3.15207	0.0100489	0.00347189	0.0623334	0.0286293
chr10	32923662	32923740	11444127	0	-	0.525641	(0.49,0.53]	chr10	872665	2	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	2.91806	3.00958	3.1011	5.69237e-4	1.17657e-4	0.00778538	0.00206264
chr5	133106065	133106161	6227206	0	+	0.21875	[0,0.29]	chr5	484833	18	UTR3	UTR3:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.79116	3.009385	3.22761	0.00287618	1.46901e-4	0.0247002	0.0026854
chr2	32023997	32024090	2590166	0	-	0.333333	(0.33,0.36]	chr2	233141	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DPY30	ENSG00000162961.14	ENST00000452582.5:ENST00000414013.5:ENST00000430665.5:ENST00000422413.1:ENST00000342166.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.7655	3.0091099999999997	3.25272	0.0175892	2.63256e-4	0.0918323	0.00393206
chr4	77048404	77048490	5479174	0	-	0.546512	(0.53,0.59]	chr4	439256	2	CDS	CDS:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	2.21316	3.00884	3.80452	0.00482336	5.45223e-8	0.0371856	3.32783e-6
chr9	120817905	120818005	10833868	0	-	0.46	(0.455,0.49]	chr9	820468	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	2.45014	3.008725	3.56731	0.00397453	5.31643e-6	0.0322851	1.62817e-4
chr10	73250371	73250467	11570280	0	-	0.270833	[0,0.29]	chr10	880679	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	2.99144	3.00852	3.0256	0.00112713	4.89672e-4	0.0122637	0.00687268
chr11	9589392	9589491	11793805	0	+	0.333333	(0.33,0.36]	chr11	903118	9	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	59	2	2.9409	3.008455	3.07601	1.68703e-4	1.62465e-5	0.00297945	4.11748e-4
chr13	95209433	95209515	14111286	0	-	0.47561	(0.455,0.49]	chr13	1104460	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	2.69053	3.00845	3.32637	0.0182983	1.64563e-4	0.0925808	0.00269001
chr15	63590726	63590826	14973968	0	+	0.48	(0.455,0.49]	chr15	1176969	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5:ENST00000558218.5:ENST00000561381.5:ENST00000559718.1:ENST00000560202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	32	2	2.69053	3.00845	3.32637	0.0182983	1.64563e-4	0.0925808	0.00269001
chr16	20770193	20770253	15582728	0	+	0.383333	(0.36,0.39]	chr16	1234738	2	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.42114	3.008435	3.59573	0.00564641	3.19976e-5	0.0422191	7.1032e-4
chr17	7225097	7225181	16103670	0	+	0.583333	(0.53,0.59]	chr17	1296179	1	UTR3	UTR3:EXON_MRNA	ACADVL	ENSG00000072778.20	ENST00000543245.6:ENST00000322910.9:ENST00000350303.9:ENST00000356839.10:ENST00000583858.5:ENST00000579425.5:ENST00000542255.6:ENST00000578711.1:ENST00000583850.5:ENST00000578319.5:ENST00000578809.5:ENST00000583848.5:ENST00000578033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.27113	3.0082750000000003	3.74542	0.0178853	2.30148e-4	0.0918323	0.00352524
chr2	70986630	70986728	2728036	0	-	0.540816	(0.53,0.59]	chr2	243102	8	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.27113	3.0082750000000003	3.74542	0.0178853	2.30148e-4	0.0918323	0.00352524
chr12	98593978	98594078	13036893	0	+	0.67	(0.59,1]	chr12	1014990	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000547534.5:ENST00000550695.1:ENST00000551265.5:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	188	2	2.01203	3.00819	4.00435	0.00219205	8.81321e-7	0.0209461	3.58909e-5
chr5	10260791	10260851	5874625	0	+	0.4	(0.39,0.42]	chr5	461876	1	CDS	CDS:UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000515676.5:ENST00000506600.1:ENST00000509846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	51	2	2.85416	3.00812	3.16208	0.00225069	2.3671e-5	0.021386	5.5951e-4
chr11	62151976	62152075	11972549	0	+	0.59596	(0.59,1]	chr11	917625	1	UTR3	UTR3:EXON_MRNA	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8	protein_coding	protein_coding	protein_coding	protein_coding	15	250	2	2.86715	3.008045	3.14894	2.94981e-5	9.25184e-6	6.69242e-4	2.84688e-4
chr5	138468739	138468833	6244802	0	+	0.319149	(0.29,0.33]	chr5	486658	8	UTR3	UTR3:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	1.75944	3.0080199999999997	4.2566	0.0226161	0.00303129	0.107244	0.0257942
chr7	128754528	128754625	8521696	0	+	0.412371	(0.39,0.42]	chr7	650171	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.87119	3.00798	4.14477	0.0373134	2.09513e-5	0.152293	5.04211e-4
chr1	32772986	32773085	130804	0	+	0.555556	(0.53,0.59]	chr1	16163	2	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.99511	3.007825	3.02054	0.00577011	9.46531e-4	0.0426551	0.010681
chrX	44898985	44899085	18678256	0	+	0.48	(0.455,0.49]	chrX	1592595	246	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	2.92099	3.00772	3.09445	0.00138399	6.1765e-4	0.0143168	0.00822794
chr11	61965105	61965112	12406732	0	-	0.428571	(0.42,0.455]	chr11	960795	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	2.50714	3.007695	3.50825	0.00122903	5.86898e-5	0.0130835	0.00129243
chr15	78499116	78499213	15040142	0	+	0.268041	[0,0.29]	chr15	1183144	11	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.61628	3.0076	3.39892	0.0101434	1.95815e-5	0.0626311	4.77469e-4
chr21	29073590	29073659	18202130	0	-	0.681159	(0.59,1]	chr21	1544781	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000484403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	134	2	2.7746	3.00752	3.24044	2.11789e-4	1.05664e-4	0.00329129	0.00204601
chr3	149982650	149982744	4515892	0	-	0.510638	(0.49,0.53]	chr3	374865	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	PFN2:TMEM183B	ENSG00000070087.14:ENSG00000224831.3	ENST00000649949.1:ENST00000494827.5:ENST00000497148.5:ENST00000463122.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	31	2	2.99849	3.0073299999999996	3.01617	0.00630123	8.62231e-4	0.0445415	0.0100487
chr7	99396011	99396107	8946535	0	-	0.40625	(0.39,0.42]	chr7	682923	15	UTR3	UTR3:EXON_MRNA:INTRON	PDAP1	ENSG00000106244.13	ENST00000496335.1:ENST00000350498.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	2.784	3.007285	3.23057	0.00261393	3.34829e-4	0.0230705	0.00509483
chr6	33202344	33202427	7121287	0	+	0.493976	(0.49,0.53]	chr6	547388	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8:ENST00000463972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	118	2	2.01464	3.0071399999999997	3.99964	0.0205094	2.25419e-9	0.0991175	2.14116e-7
chr12	110730524	110730602	13539328	0	-	0.333333	(0.33,0.36]	chr12	1065124	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5:ENST00000620030.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	7	59	2	1.96645	3.00708	4.04771	0.0197415	1.07938e-7	0.095966	5.96435e-6
chr7	152180908	152181007	9135370	0	-	0.474747	(0.455,0.49]	chr7	698409	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.65352	3.00701	3.3605	0.00147278	0.00143499	0.0157578	0.0147046
chr1	241508602	241508669	1577482	0	-	0.462687	(0.455,0.49]	chr1	157531	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	57	2	2.84314	3.00685	3.17056	4.1243e-4	7.87569e-5	0.00604953	0.00149607
chr1	89934752	89934851	349111	0	+	0.40404	(0.39,0.42]	chr1	34169	17	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.49701	3.006685	3.51636	0.0339607	6.99837e-4	0.141431	0.00846751
chr21	33505631	33505702	18220343	0	-	0.309859	(0.29,0.33]	chr21	1546328	2	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	45	2	2.25163	3.006535	3.76144	0.00176075	1.09291e-5	0.0180053	2.96269e-4
chr2	112659203	112659296	2001879	0	+	0.516129	(0.49,0.53]	chr2	190042	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000498224.5:ENST00000433924.5:ENST00000413135.1:ENST00000480984.1:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.78308	3.00647	4.22986	0.0425234	1.25249e-5	0.167547	3.30689e-4
chr3	141925601	141925701	3790192	0	+	0.42	(0.39,0.42]	chr3	323507	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1:ENST00000487199.5:ENST00000484727.1:ENST00000486782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	121	2	2.54297	3.006455	3.46994	2.49907e-5	2.72e-7	5.82427e-4	1.4763e-5
chr20	56366683	56366782	17834369	0	+	0.40404	(0.39,0.42]	chr20	1507875	5	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	2.16078	3.006425	3.85207	0.00370921	1.28587e-4	0.0302984	0.00241206
chr11	119302836	119302935	12163777	0	+	0.515152	(0.49,0.53]	chr11	938080	32	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.7294	3.00636	4.28332	0.0216372	0.00338762	0.103121	0.0288632
chrX	65739793	65739893	18716363	0	+	0.53	(0.49,0.53]	chrX	1596884	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	14	114	2	2.48171	3.006335	3.53096	1.02213e-4	4.67029e-7	0.00199025	2.08387e-5
chr1	40422854	40422949	154044	0	+	0.547368	(0.53,0.59]	chr1	19281	9	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	15	145	2	2.83296	3.0063050000000002	3.17965	1.38047e-5	1.73234e-6	3.94563e-4	6.35589e-5
chr6	63576435	63576531	7205031	0	+	0.479167	(0.455,0.49]	chr6	556516	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PTP4A1:RP5-1148A21.4	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000639568.2:ENST00000470661.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1:ENST00000473334.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	43	2	2.84202	3.00629	3.17056	5.41187e-4	4.1243e-4	0.00689416	0.00604953
chr5	37370977	37371041	6540780	0	-	0.421875	(0.42,0.455]	chr5	506698	1	UTR5	UTR5:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000513532.1:ENST00000507675.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	2.3893	3.0062249999999997	3.62315	0.00221606	4.234e-4	0.0205138	0.00613535
chr20	33752166	33752260	17945493	0	-	0.361702	(0.36,0.39]	chr20	1519826	1	EXON_PSEUDO	EXON_PSEUDO	RPL31P2	ENSG00000230837.1	ENST00000413849.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	27	2	2.84089	3.00617	3.17145	0.0128123	3.99865e-4	0.0719798	0.0054764
chr1	167542099	167542198	1347837	0	-	0.393939	(0.39,0.42]	chr1	137992	12	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	2.60558	3.006025	3.40647	4.23634e-4	1.67145e-5	0.00613675	4.22716e-4
chr1	113976185	113976284	418237	0	+	0.282828	[0,0.29]	chr1	41199	28	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.50979	3.006015	3.50224	0.00608277	7.95529e-4	0.0438976	0.009356
chr2	135120818	135120918	2080403	0	+	0.43	(0.42,0.455]	chr2	195116	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	1.95205	3.005795	4.05954	0.0248244	0.00617886	0.113644	0.0439741
chr9	136468414	136468512	10890847	0	-	0.438776	(0.42,0.455]	chr9	827584	1	CDS	CDS:EXON_MRNA	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11:ENST00000371706.7:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.95205	3.005795	4.05954	0.0248244	0.00617886	0.113644	0.0439741
chr1	23794062	23794136	99040	0	+	0.5	(0.49,0.53]	chr1	11559	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LYPLA2	ENSG00000011009.11	ENST00000374514.8:ENST00000374505.6:ENST00000420982.5:ENST00000374503.7:ENST00000495365.5:ENST00000374502.7:ENST00000492577.1:ENST00000374501.1:ENST00000472213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr10	47706202	47706302	11032131	0	+	0.51	(0.49,0.53]	chr10	840056	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	SHLD2P3:RHEBP2	ENSG00000189014.7:ENSG00000226964.1	ENST00000323387.5:ENST00000450289.1	processed_pseudogene	processed_pseudogene	processed_pseudogene:unprocessed_pseudogene	processed_pseudogene:unprocessed_pseudogene	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr16	85374044	85374144	15795058	0	+	0.53	(0.49,0.53]	chr16	1256986	147	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr17	38729395	38729495	16217684	0	+	0.52	(0.49,0.53]	chr17	1310712	39	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr3	179414965	179415047	4605690	0	-	0.5	(0.49,0.53]	chr3	380179	2	CDS	CDS:EXON_MRNA	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1:ENST00000466899.6:ENST00000674862.1:ENST00000674713.1:ENST00000468623.6:ENST00000675901.1:ENST00000674927.1:ENST00000465153.2	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr5	132643004	132643089	6225650	0	+	0.494118	(0.49,0.53]	chr5	484565	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AC116366.7:RAD50	ENSG00000283782.2:ENSG00000113522.14	ENST00000638452.2:ENST00000638568.2:ENST00000639899.1:ENST00000638504.1:ENST00000640655.2:ENST00000378823.8:ENST00000651249.1:ENST00000455677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr8	100895857	100895944	9520287	0	+	0.505747	(0.49,0.53]	chr8	723687	2	EXON_PSEUDO	EXON_PSEUDO	RPS26P6	ENSG00000212994.5	ENST00000475156.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr9	134339833	134339933	10505691	0	+	0.51	(0.49,0.53]	chr9	794894	128	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chrX	151404958	151405058	18909789	0	+	0.53	(0.49,0.53]	chrX	1610138	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	VMA21	ENSG00000160131.14	ENST00000477649.1:ENST00000370361.5:ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.56183	3.0056700000000003	3.44951	0.0405223	0.0261296	0.153343	0.118976
chr6	67882380	67882480	7784084	0	-	0.52	(0.49,0.53]	chr6	596223	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	75	601	2	2.93975	3.005475	3.0712	2.28965e-8	6.9937e-9	1.72217e-6	5.6929e-7
chr15	74937914	74938014	15376446	0	-	0.8	(0.59,1]	chr15	1215573	1	CDS_START	CDS_START:CDS:EXON_MRNA	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	7	122	2	2.62184	3.0052700000000003	3.3887	8.93288e-4	4.68905e-5	0.010245	0.00107286
chr3	48748783	48748883	4170022	0	-	0.4	(0.39,0.42]	chr3	350020	23	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13:ENST00000454963.5	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.48908	3.005235	3.52139	0.0101318	5.10101e-5	0.0626311	0.00104581
chr10	28611847	28611922	10990547	0	+	0.426667	(0.42,0.455]	chr10	835893	2	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	52	2	1.84805	3.0052049999999997	4.16236	0.00540934	1.83138e-5	0.0397151	4.99708e-4
chr6	31280408	31280501	7114332	0	+	0.602151	(0.59,1]	chr6	545583	2	EXON_PSEUDO	EXON_PSEUDO	RPL3P2	ENSG00000227939.1	ENST00000413027.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	59	2	2.03921	3.005195	3.97118	0.0371471	1.3379e-4	0.151849	0.00229039
chr2	61868517	61868604	2691323	0	-	0.310345	(0.29,0.33]	chr2	240526	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	36	2	2.86059	3.004955	3.14932	5.48907e-4	1.84463e-4	0.00697672	0.00321185
chr12	119680924	119681024	13114521	0	+	0.45	(0.42,0.455]	chr12	1023559	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	48	2	2.5451	3.0044750000000002	3.46385	0.00112955	7.26611e-5	0.0128875	0.00139386
chr6	149379146	149379239	7480755	0	+	0.526882	(0.49,0.53]	chr6	571632	4	CDS	CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	56	2	2.68653	3.004365	3.3222	0.00122977	2.96558e-5	0.013593	6.71364e-4
chr12	53461014	53461078	12886540	0	+	0.59375	(0.59,1]	chr12	1002430	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6:ENST00000552296.6:ENST00000551104.5:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	11	208	2	2.12266	3.004315	3.88597	0.00351888	1.82799e-7	0.0298102	9.42166e-6
chr1	65601901	65601960	253323	0	+	0.440678	(0.42,0.455]	chr1	28837	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	2.83395	3.004265	3.17458	6.25227e-4	2.16935e-5	0.00830005	5.17607e-4
chr11	46752634	46752710	12383570	0	-	0.473684	(0.455,0.49]	chr11	956011	1	CDS	CDS:EXON_MRNA:PRIMIRNA	CKAP5:MIR5582	ENSG00000175216.15:ENSG00000263540.1	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000579697.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	4	37	2	2.74211	3.0041700000000002	3.26623	0.00330545	2.31662e-4	0.028478	0.00354314
chr5	32354537	32354631	6518886	0	-	0.329787	(0.29,0.33]	chr5	504941	3	UTR3	UTR3:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000502988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.67277	3.004105	3.33544	0.0255386	0.0016889	0.117089	0.0165476
chr5	53683169	53683221	5969650	0	+	0.326923	(0.29,0.33]	chr5	467991	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.67277	3.004105	3.33544	0.0255386	0.0016889	0.117089	0.0165476
chr5	168550189	168550289	6968919	0	-	0.33	(0.29,0.33]	chr5	532791	18	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.67277	3.004105	3.33544	0.0255386	0.0016889	0.117089	0.0165476
chr6	35575051	35575149	7676292	0	-	0.357143	(0.33,0.36]	chr6	588423	16	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.84841	3.004085	3.15976	0.00437542	0.0020676	0.0340502	0.0194849
chr16	56434753	56434829	15959703	0	-	0.342105	(0.33,0.36]	chr16	1279983	1	CDS	CDS:UTR3:EXON_MRNA	NUDT21:RP11-413H22.3	ENSG00000167005.14:ENSG00000288725.1	ENST00000300291.10:ENST00000684388.1:ENST00000563860.1:ENST00000566340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.97606	3.00393	3.0318	0.00871774	1.96415e-4	0.0558165	0.00311664
chr2	43899276	43899334	2623035	0	-	0.413793	(0.39,0.42]	chr2	236115	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000483489.2:ENST00000683645.1:ENST00000683528.1:ENST00000683802.1:ENST00000682845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.55844	3.003835	3.44923	0.0263695	0.00105208	0.117164	0.0123035
chr2	47161780	47161838	2631457	0	-	0.431034	(0.42,0.455]	chr2	236923	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5:ENST00000484408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	2.90616	3.003835	3.10151	0.00162359	3.57711e-5	0.0169915	7.83224e-4
chr7	121236713	121236772	8496227	0	+	0.440678	(0.42,0.455]	chr7	648412	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	53	2	2.90616	3.003835	3.10151	0.00162359	3.57711e-5	0.0169915	7.83224e-4
chr10	70161618	70161678	11560505	0	-	0.45	(0.42,0.455]	chr10	879597	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000373236.1:ENST00000477464.1:ENST00000373239.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	2.16214	3.0037599999999998	3.84538	0.00696724	1.2691e-4	0.0474632	0.00219756
chr7	116917867	116917966	8478166	0	+	0.40404	(0.39,0.42]	chr7	647538	1	UTR3	UTR3:EXON_MRNA	CAPZA2	ENSG00000198898.14	ENST00000361183.8:ENST00000426421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.81106	3.00347	3.19588	0.00321212	6.4431e-4	0.0280721	0.00799617
chr7	135625259	135625355	8553099	0	+	0.416667	(0.39,0.42]	chr7	652852	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.81106	3.00347	3.19588	0.00321212	6.4431e-4	0.0280721	0.00799617
chr11	34096478	34096575	11905455	0	+	0.536082	(0.53,0.59]	chr11	909574	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1:ENST00000531668.1:ENST00000533562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	129	2	2.10664	3.003405	3.90017	0.00199188	2.35304e-8	0.0195779	1.62079e-6
chr16	23574189	23574289	15594640	0	+	0.37	(0.36,0.39]	chr16	1236627	37	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	3.00115	3.003365	3.00558	0.0012486	2.21724e-4	0.0137762	0.00341828
chr1	234356965	234357053	1557243	0	-	0.693182	(0.59,1]	chr1	155727	4	EXON_PSEUDO	EXON_PSEUDO	RP5-827C21.1	ENSG00000235605.1	ENST00000422958.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	66	2	2.38157	3.003195	3.62482	0.00534794	7.40647e-4	0.0392783	0.00925967
chr8	41803399	41803450	9304283	0	+	0.411765	(0.39,0.42]	chr8	712188	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000207101.1	ENST00000384373.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	6	29	2	1.85749	3.003175	4.14886	0.00953248	0.00415881	0.0599768	0.0325842
chr2	208264570	208264670	3142722	0	-	0.36	(0.33,0.36]	chr2	277744	86	INTRON	INTRON	IDH1	ENSG00000138413.14	ENST00000451391.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.53712	3.0031	3.46908	0.00766322	0.00114872	0.0503696	0.0130528
chr6	85611997	85612095	7825768	0	-	0.357143	(0.33,0.36]	chr6	599558	44	UTR3	UTR3:EXON_MRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.68374	3.002655	3.32157	0.00194492	1.77615e-4	0.0193053	0.00287736
chr9	124861912	124861961	10853033	0	-	0.693878	(0.59,1]	chr9	822066	1	UTR5	UTR5:EXON_MRNA	RPL35	ENSG00000136942.15	ENST00000373570.8:ENST00000348462.6:ENST00000487431.1:ENST00000493018.5:ENST00000629845.1:ENST00000495728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	68	1140	2	2.6268	3.00261	3.37842	9.08054e-6	2.11926e-8	2.79788e-4	1.48013e-6
chr2	3576558	3576630	1616645	0	+	0.458333	(0.455,0.49]	chr2	160398	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000491937.6:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000479123.1:ENST00000645540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	119	2	2.85644	3.00258	3.14872	1.85185e-5	1.01101e-6	5.03582e-4	4.03099e-5
chr5	178210552	178210623	6411589	0	+	0.507042	(0.49,0.53]	chr5	498728	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	2.51367	3.00255	3.49143	0.00120983	6.13943e-5	0.0135286	0.00122382
chr7	6023838	6023931	8662402	0	-	0.387097	(0.36,0.39]	chr7	662531	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1	protein_coding	protein_coding	protein_coding	protein_coding	12	75	2	2.62664	3.00244	3.37824	1.61189e-4	2.50278e-5	0.00287786	5.82427e-4
chr10	69401696	69401790	11096857	0	+	0.521277	(0.49,0.53]	chr10	843823	7	UTR3	UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	77	2	2.2027	3.00223	3.80176	0.00187632	9.10034e-7	0.0187778	3.69437e-5
chr16	58523435	58523502	15966250	0	-	0.432836	(0.42,0.455]	chr16	1281057	2	CDS	CDS:UTR3:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000569924.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	45	2	1.97671	3.002215	4.02772	0.00554508	4.30844e-5	0.0405292	0.00100091
chr6	41789617	41789704	7150334	0	+	0.505747	(0.49,0.53]	chr6	551654	2	UTR3	UTR3:EXON_MRNA	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	78	2	2.71894	3.002085	3.28523	1.75503e-4	9.94306e-6	0.00306786	2.75183e-4
chr2	27387088	27387158	2570488	0	-	0.485714	(0.455,0.49]	chr2	231569	1	CDS	CDS:EXON_MRNA	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5:ENST00000484925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.52734	3.002025	3.47671	0.0368644	0.00792433	0.145024	0.0523592
chr16	32878614	32878705	15920232	0	-	0.417582	(0.39,0.42]	chr16	1276390	4	SS5_PROX	SS5_PROX:INTRON	SLC6A10P	ENSG00000214617.9	ENST00000330048.9	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	20	2	2.88836	3.001925	3.11549	0.0102432	0.00403491	0.062872	0.032143
chr16	71730285	71730384	16007921	0	-	0.414141	(0.39,0.42]	chr16	1286070	14	UTR3	UTR3:EXON_MRNA	AP1G1	ENSG00000166747.13	ENST00000299980.9	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.88836	3.001925	3.11549	0.0102432	0.00403491	0.062872	0.032143
chr22	22485010	22485108	18444732	0	-	0.418367	(0.39,0.42]	chr22	1572767	7	UTR3	UTR3:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.94917	3.00189	3.05461	0.00121791	8.55091e-4	0.0130188	0.0105173
chr1	225831778	225831868	738161	0	+	0.5	(0.49,0.53]	chr1	74413	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EPHX1	ENSG00000143819.13	ENST00000272167.10:ENST00000448202.5:ENST00000614058.4:ENST00000366837.5:ENST00000467015.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.56183	3.001665	3.4415	0.0261296	9.98297e-4	0.118976	0.0111246
chr12	120153826	120153909	13579277	0	-	0.518072	(0.49,0.53]	chr12	1068644	2	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.56183	3.001665	3.4415	0.0261296	9.98297e-4	0.118976	0.0111246
chr1	74706204	74706295	1103494	0	-	0.32967	(0.29,0.33]	chr1	111250	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CRYZ	ENSG00000116791.14	ENST00000370872.7:ENST00000340866.10:ENST00000492102.1:ENST00000417775.5:ENST00000370871.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.92065	3.00163	3.08261	0.0117842	0.0048227	0.0686664	0.0365653
chr8	60621871	60621969	9353528	0	+	0.306122	(0.29,0.33]	chr8	715323	12	UTR3	UTR3:EXON_MRNA	RAB2A	ENSG00000104388.15	ENST00000262646.12	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.92065	3.00163	3.08261	0.0117842	0.0048227	0.0686664	0.0365653
chr11	125575262	125575308	12194111	0	+	0.434783	(0.42,0.455]	chr11	940625	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000524723.5:ENST00000278903.11:ENST00000531636.5:ENST00000527842.6:ENST00000529765.5:ENST00000527235.6:ENST00000527520.6:ENST00000527131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.15137	3.001435	3.8515	0.0123864	0.0119089	0.07101	0.0686664
chr3	180976789	180976888	3933751	0	+	0.454545	(0.42,0.455]	chr3	330755	6	UTR3	UTR3:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000357559.9:ENST00000445140.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.15137	3.001435	3.8515	0.0123864	0.0119089	0.07101	0.0686664
chr6	16266017	16266117	7067552	0	+	0.5	(0.49,0.53]	chr6	540898	75	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	198	2	2.08635	3.00142	3.91649	3.97193e-4	3.52787e-10	0.00545264	4.60836e-8
chr16	58168609	58168693	15965720	0	-	0.452381	(0.42,0.455]	chr16	1280959	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	2.81191	3.001345	3.19078	0.00310864	6.31824e-4	0.0274272	0.0078507
chr6	27893424	27893462	7105348	0	+	0.447368	(0.42,0.455]	chr6	543491	1	UTR5	UTR5:EXON_MRNA	H2BC17	ENSG00000274641.2	ENST00000616182.2	protein_coding	protein_coding	protein_coding	protein_coding	8	65	2	2.90098	3.001245	3.10151	1.4418e-4	3.57711e-5	0.00264215	7.83224e-4
chr6	28155105	28155204	7105802	0	+	0.333333	(0.33,0.36]	chr6	543601	12	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	11	74	2	2.14833	3.00124	3.85415	0.00253487	9.55426e-8	0.0233955	5.36765e-6
chr14	103912381	103912476	14797139	0	-	0.463158	(0.455,0.49]	chr14	1159806	2	UTR3	UTR3:EXON_MRNA	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.98188	3.0011400000000004	4.0204	0.0226804	0.00736097	0.105116	0.0490627
chr6	108261002	108261083	7884253	0	-	0.716049	(0.59,1]	chr6	603564	2	UTR5	UTR5:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.57134	3.00111	3.43088	0.00259175	3.20583e-5	0.0237245	7.1108e-4
chr1	160277657	160277751	1328546	0	-	0.446809	(0.42,0.455]	chr1	135910	10	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-574F21.3:PEX19	ENSG00000258465.8:ENSG00000162735.19	ENST00000647676.1:ENST00000556710.6:ENST00000485079.1:ENST00000368072.10:ENST00000472750.5:ENST00000467711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.81137	3.001075	3.19078	0.0120386	0.00310864	0.0700876	0.0274272
chr16	31091310	31091342	15916936	0	-	0.6875	(0.59,1]	chr16	1275806	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000533518.5:ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3:ENST00000394971.7:ENST00000498155.1:ENST00000472468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	42	2	2.69477	3.000925	3.30708	0.020208	0.00252451	0.0978331	0.0226777
chrX	153955345	153955443	19275646	0	-	0.612245	(0.59,1]	chrX	1637914	14	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.69477	3.000925	3.30708	0.020208	0.00252451	0.0978331	0.0226777
chr6	125980046	125980145	7386368	0	+	0.343434	(0.33,0.36]	chr6	566226	25	UTR3	UTR3:EXON_MRNA	HINT3	ENSG00000111911.7	ENST00000229633.7	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.31697	3.0008749999999997	3.68478	0.00966431	2.19298e-6	0.0606263	7.73912e-5
chr11	119300372	119300471	12163752	0	+	0.525253	(0.49,0.53]	chr11	938080	7	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.56183	3.00087	3.43991	0.0261296	8.40266e-5	0.118976	0.00158427
chr6	108907614	108907700	7885492	0	-	0.523256	(0.49,0.53]	chr6	603592	1	EXON_PSEUDO	EXON_PSEUDO	ATP5MFP2	ENSG00000228834.1	ENST00000447543.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	35	2	2.56183	3.00087	3.43991	0.0261296	8.40266e-5	0.118976	0.00158427
chr12	56282513	56282608	13349953	0	-	0.526316	(0.49,0.53]	chr12	1051026	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000547449.1:ENST00000547912.1:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	2.90042	3.00076	3.1011	5.69237e-4	3.88511e-4	0.00778538	0.00534839
chr6	170584298	170584389	8091292	0	-	0.714286	(0.59,1]	chr6	618090	1	CDS	CDS:EXON_MRNA	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000392090.6:ENST00000545869.5:ENST00000542896.5:ENST00000544866.5:ENST00000539212.5:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2:ENST00000544755.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	77	2	2.39073	3.00048	3.61023	0.0027229	7.25496e-4	0.0245443	0.00869086
chr10	96522262	96522330	11640101	0	-	0.382353	(0.36,0.39]	chr10	886560	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.63115	2.999935	3.36872	0.0245975	1.31092e-4	0.114841	0.00226268
chr4	102307435	102307520	5561098	0	-	0.364706	(0.36,0.39]	chr4	444106	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SLC39A8	ENSG00000138821.14	ENST00000424970.7:ENST00000682549.1:ENST00000356736.5:ENST00000394833.6:ENST00000683401.1:ENST00000682932.1:ENST00000683173.1:ENST00000682227.1:ENST00000683412.1:ENST00000684289.1:ENST00000683462.1:ENST00000682243.1:ENST00000683916.1:ENST00000683706.1:ENST00000684386.1:ENST00000683634.1:ENST00000683221.1:ENST00000510255.5:ENST00000514000.5:ENST00000512657.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	2.63115	2.999935	3.36872	0.0245975	1.31092e-4	0.114841	0.00226268
chr5	69365240	69365339	6625900	0	-	0.484848	(0.455,0.49]	chr5	511949	3	CDS	CDS:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8:ENST00000503245.5:ENST00000509462.5:ENST00000504109.5	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.61558	2.99984	3.3841	0.00184897	1.17485e-4	0.0185736	0.00206023
chr4	7773389	7773488	4712692	0	+	0.414141	(0.39,0.42]	chr4	390956	13	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	3	27	2	2.94917	2.9997350000000003	3.0503	0.00570576	0.00121791	0.0424438	0.0130188
chr11	75401639	75401660	12023062	0	+	0.380952	(0.36,0.39]	chr11	926974	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000530164.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000527273.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000534555.5:ENST00000528847.1:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	124	2	2.86062	2.99973	3.13884	4.71252e-6	5.98992e-7	1.6302e-4	2.5822e-5
chr15	90231115	90231213	15437781	0	-	0.571429	(0.53,0.59]	chr15	1221211	1	CDS	CDS:UTR5:EXON_MRNA	CIB1	ENSG00000185043.12	ENST00000328649.11:ENST00000612800.1:ENST00000650306.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.69162	2.99969	4.30776	0.0342431	0.00407289	0.141233	0.0324137
chr4	17607399	17607489	4734280	0	+	0.466667	(0.455,0.49]	chr4	392776	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LAP3	ENSG00000002549.13	ENST00000226299.9:ENST00000618908.4:ENST00000606142.5:ENST00000503467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.50904	2.9996850000000004	3.49033	0.0310515	7.92678e-4	0.131262	0.00933379
chr11	3827850	3827944	12238985	0	-	0.56383	(0.53,0.59]	chr11	945693	3	CDS	CDS:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396979.1:ENST00000396978.1:ENST00000533217.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.94125	2.9995000000000003	3.05775	0.0012261800000000001	6.94592e-4	0.0135648	0.00846751
chr10	45455571	45455670	11467168	0	-	0.545455	(0.53,0.59]	chr10	874475	11	UTR3	UTR3:EXON_MRNA	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.7898	2.99927	3.20874	0.0128364	0.00278422	0.0719798	0.0241009
chr1	222733607	222733706	724618	0	+	0.373737	(0.36,0.39]	chr1	73180	10	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.73394	2.99904	3.26414	0.00131831	4.42599e-5	0.0143836	9.29425e-4
chr11	46777438	46777495	12383841	0	-	0.403509	(0.39,0.42]	chr11	956100	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	14	92	2	2.41669	2.998995	3.5813	1.12959e-4	1.08775e-6	0.00200586	4.73591e-5
chr1	219997162	219997252	1510965	0	-	0.411111	(0.39,0.42]	chr1	151029	3	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	50	2	2.66975	2.99893	3.32811	0.00182819	1.22088e-4	0.0183913	0.00212239
chr1	32780181	32780278	923518	0	-	0.57732000000000006	(0.53,0.59]	chr1	97320	2	CDS	CDS:UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5:ENST00000478828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	51	2	2.87438	2.9988900000000003	3.1234	0.00390623	1.55101e-4	0.0322851	0.00258327
chr12	6748271	6748363	13188351	0	-	0.48913	(0.455,0.49]	chr12	1032664	4	UTR3	UTR3:EXON_MRNA	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000435120.5	protein_coding	protein_coding	protein_coding	protein_coding	14	108	2	2.76705	2.99878	3.23051	2.0804e-5	2.06187e-6	5.53413e-4	7.35008e-5
chr8	123044659	123044759	9587121	0	+	0.39	(0.36,0.39]	chr8	727012	19	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5	protein_coding	protein_coding	protein_coding	protein_coding	56	346	2	2.75122	2.9986699999999997	3.24612	4.88605e-7	5.55431e-10	2.16464e-5	6.84856e-8
chr1	21852699	21852765	890954	0	-	0.651515	(0.59,1]	chr1	92386	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	113	2	2.67996	2.99865	3.31734	0.00470478	2.02803e-5	0.0363963	4.93215e-4
chr1	42830854	42830941	162118	0	+	0.643678	(0.59,1]	chr1	20383	2	CDS	CDS:EXON_MRNA:INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	1.88006	2.99839	4.11672	0.0554008	0.0222273	0.191173	0.105595
chr12	96035419	96035519	13485329	0	-	0.62	(0.59,1]	chr12	1060572	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	1.88006	2.99839	4.11672	0.0554008	0.0222273	0.191173	0.105595
chrX	54815414	54815498	18705071	0	+	0.607143	(0.59,1]	chrX	1596191	3	CDS	CDS:EXON_MRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.88006	2.99839	4.11672	0.0554008	0.0222273	0.191173	0.105595
chr9	125360626	125360725	10461743	0	+	0.484848	(0.455,0.49]	chr9	788154	2	CDS	CDS:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.53286	2.9983750000000002	3.46389	0.0282409	9.14164e-4	0.124386	0.0110519
chrX	39787861	39787953	19044757	0	-	0.532609	(0.53,0.59]	chrX	1618678	9	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	60	2	2.7542	2.9983500000000003	3.2425	3.14256e-4	2.6381e-4	0.00452711	0.00427022
chr7	44835484	44835584	8800378	0	-	0.41	(0.39,0.42]	chr7	671372	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.81106	2.9981799999999996	3.1853	6.4431e-4	8.65244e-5	0.00799617	0.00177086
chr8	127741256	127741356	9612683	0	+	0.26	[0,0.29]	chr8	728500	4	UTR3	UTR3:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	11	58	2	2.91569	2.99804	3.08039	4.23945e-5	2.49522e-5	9.93612e-4	5.81911e-4
chr2	99399414	99399509	1954228	0	+	0.357895	(0.33,0.36]	chr2	185614	1	UTR3	UTR3:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11:ENST00000470023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.17058	2.99798	3.82538	0.01664	1.40963e-4	0.0878065	0.002378
chr1	31906808	31906906	921168	0	-	0.357143	(0.33,0.36]	chr1	96904	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	13	81	2	2.20982	2.99793	3.78604	0.00125321	1.68527e-8	0.0133145	1.32933e-6
chr1	28240998	28241098	115359	0	+	0.33	(0.29,0.33]	chr1	14098	30	INTRON	INTRON	ATP5IF1	ENSG00000130770.18	ENST00000468425.2	protein_coding	protein_coding	protein_coding	protein_coding	11	58	2	2.2241	2.997925	3.77175	0.00140253	1.12402e-6	0.0151232	4.41253e-5
chr12	103947851	103947946	13056929	0	+	0.273684	[0,0.29]	chr12	1017364	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.9222	2.99785	3.0735	0.00785095	4.0458e-4	0.0520241	0.00550337
chr15	90966308	90966398	15439132	0	-	0.488889	(0.455,0.49]	chr15	1221335	4	UTR3	UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	65	2	2.91622	2.99782	3.07942	1.46687e-4	4.8361e-5	0.0026854	9.97179e-4
chr2	68178951	68179047	2716487	0	-	0.375	(0.36,0.39]	chr2	241809	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-474G23.1:PPP3R1	ENSG00000273398.6:ENSG00000221823.11	ENST00000406334.3:ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	49	2	2.85584	2.99782	3.1398	1.78887e-4	1.32191e-4	0.0028962	0.00246066
chr17	28880371	28880465	16488322	0	-	0.56383	(0.53,0.59]	chr17	1348326	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	116	2	2.07202	2.9976700000000003	3.92332	3.86887e-4	3.68546e-6	0.00533763	1.31185e-4
chr3	184322543	184322636	3949209	0	+	0.634409	(0.59,1]	chr3	332420	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	1.8502	2.997515	4.14483	0.0334531	0.0183207	0.140296	0.0945306
chr17	47143882	47143982	16571300	0	-	0.49	(0.455,0.49]	chr17	1361140	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000525495.6:ENST00000574304.5:ENST00000575830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	30	2	1.48669	2.99737	4.50805	0.030677	0.00122223	0.130016	0.0135383
chr12	53480397	53480493	12886749	0	+	0.458333	(0.455,0.49]	chr12	1002482	11	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000455667.7:ENST00000547859.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.69053	2.997185	3.30384	0.0182983	0.00184955	0.0925808	0.0178046
chr6	87701775	87701867	7828226	0	-	0.75	(0.59,1]	chr6	599868	2	UTR5	UTR5:EXON_MRNA	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.63214	2.997185	3.36223	0.005622	0.00203572	0.0421873	0.0192213
chr7	130507273	130507372	9064232	0	-	0.464646	(0.455,0.49]	chr7	692363	1	CDS	CDS:EXON_MRNA	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000617523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.69053	2.997185	3.30384	0.0182983	0.00184955	0.0925808	0.0178046
chr7	107146307	107146384	8455073	0	+	0.376623	(0.36,0.39]	chr7	645822	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	2.78549	2.99718	3.20887	8.51229e-5	5.70996e-5	0.00174655	0.00114991
chr1	6871856	6871947	20654	0	+	0.274725	[0,0.29]	chr1	3261	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000472283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	35	2	2.88175	2.99716	3.11257	0.00120521	1.71924e-4	0.0134827	0.00279463
chr11	134152650	134152747	12674887	0	-	0.309278	(0.29,0.33]	chr11	983301	27	UTR3	UTR3:EXON_MRNA:INTRON	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000526787.2:ENST00000534532.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	2.36742	2.997125	3.62683	0.0147368	6.18968e-4	0.0801529	0.00822794
chr1	110023251	110023349	401938	0	+	0.397959	(0.39,0.42]	chr1	39336	17	UTR3	UTR3:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8	protein_coding	protein_coding	protein_coding	protein_coding	13	98	2	2.57262	2.997025	3.42143	1.55815e-4	4.17496e-7	0.0028195	1.89558e-5
chr6	43538919	43539017	7708243	0	-	0.540816	(0.53,0.59]	chr6	591510	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	XPO5:RP3-337H4.6	ENSG00000124571.18:ENSG00000219470.1	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1:ENST00000402069.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	7	57	2	1.55135	2.99695	4.44255	0.0294511	3.41603e-6	0.129773	1.12474e-4
chr12	57820819	57820919	13358207	0	-	0.49	(0.455,0.49]	chr12	1053218	10	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.9967	2.996835	2.99697	0.00650423	9.57891e-4	0.0454205	0.0107247
chr11	119337014	119337112	12163918	0	+	0.622449	(0.59,1]	chr11	938094	7	UTR3	UTR3:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.76006	2.99677	3.23348	0.00352837	0.00330486	0.0298518	0.027613
chr2	96860816	96860907	2792229	0	-	0.703297	(0.59,1]	chr2	249223	2	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.76006	2.99677	3.23348	0.00352837	0.00330486	0.0298518	0.027613
chr2	227536900	227536993	2415203	0	+	0.494624	(0.49,0.53]	chr2	217272	1	CDS	CDS:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.38683	2.9966799999999996	3.60653	0.012654	4.50981e-4	0.0718207	0.00605268
chr17	76563408	76563505	16359183	0	+	0.42268	(0.42,0.455]	chr17	1328581	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	22	160	2	2.66258	2.99664	3.3307	5.95777e-6	1.87117e-7	1.79356e-4	1.0755e-5
chr12	54293290	54293381	13343353	0	-	0.571429	(0.53,0.59]	chr12	1049646	10	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.38191	2.99662	3.61133	0.00477439	4.55298e-4	0.0368489	0.00608573
chr12	53295474	53295567	12885724	0	+	0.655914	(0.59,1]	chr12	1002248	3	UTR5	UTR5:EXON_MRNA	PFDN5:RP11-680A11.7	ENSG00000123349.15:ENSG00000288663.1	ENST00000551018.5:ENST00000550069.2:ENST00000676527.1:ENST00000677326.1:ENST00000549759.2:ENST00000677982.1:ENST00000628881.2:ENST00000679196.1:ENST00000676940.1:ENST00000676632.1:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000677199.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000678284.1:ENST00000551223.5:ENST00000549995.1:ENST00000677184.1:ENST00000552742.6:ENST00000677712.1:ENST00000550513.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	4	84	2	2.17889	2.9965	3.81411	0.025085	1.87674e-5	0.116848	4.60644e-4
chr12	120723093	120723192	13117671	0	+	0.515152	(0.49,0.53]	chr12	1024038	32	UTR3	UTR3:EXON_MRNA:PRIMIRNA	UNC119B:MIR4700	ENSG00000175970.11:ENSG00000284143.1	ENST00000344651.5:ENST00000578311.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	2	17	2	2.05119	2.99648	3.94177	0.0360743	0.0104929	0.145024	0.063428
chr2	70986334	70986433	2728033	0	-	0.515152	(0.49,0.53]	chr2	243102	5	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.05119	2.99648	3.94177	0.0360743	0.0104929	0.145024	0.063428
chr4	7025003	7025089	4706712	0	+	0.511628	(0.49,0.53]	chr4	390742	1	CDS	CDS:EXON_MRNA	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.05119	2.99648	3.94177	0.0360743	0.0104929	0.145024	0.063428
chr5	14693836	14693935	5884852	0	+	0.50505	(0.49,0.53]	chr5	462679	9	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.05119	2.99648	3.94177	0.0360743	0.0104929	0.145024	0.063428
chr8	140515819	140515914	9641875	0	+	0.347368	(0.33,0.36]	chr8	730104	7	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.70359	2.996425	4.28926	0.0245566	7.83197e-6	0.114841	2.24375e-4
chr3	195783951	195784050	4661106	0	-	0.575758	(0.53,0.59]	chr3	385270	53	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	2.37402	2.99629	3.61856	0.0303021	0.00230837	0.129773	0.0211205
chr18	36138369	36138426	16824960	0	+	0.491228	(0.49,0.53]	chr18	1387555	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000543127.5:ENST00000544267.5:ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000535488.5:ENST00000540135.5:ENST00000542430.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540730.5:ENST00000540323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	23	2	1.56467	2.9962850000000003	4.4279	0.051923	0.00196987	0.18423900000000001	0.0193972
chr6	30677170	30677268	7658827	0	-	0.5	(0.49,0.53]	chr6	584161	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1R18	ENSG00000146112.12	ENST00000399199.7:ENST00000488324.1:ENST00000467662.5:ENST00000274853.8:ENST00000615892.4:ENST00000615527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	1.56467	2.9962850000000003	4.4279	0.051923	0.00196987	0.18423900000000001	0.0193972
chr1	203308126	203308224	668389	0	+	0.44898	(0.42,0.455]	chr1	67323	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BTG2	ENSG00000159388.6	ENST00000475157.1:ENST00000290551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	28	2	1.58967	2.996215	4.40276	0.026634	0.0017618	0.118265	0.0180053
chr22	37225750	37225846	18503493	0	-	0.645833	(0.59,1]	chr22	1578938	6	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.89783	2.99619	3.09455	0.00198798	7.92671e-4	0.0195488	0.00933379
chr1	203865040	203865119	670705	0	+	0.329114	(0.29,0.33]	chr1	67671	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRPE	ENSG00000182004.13	ENST00000414487.7:ENST00000475035.5:ENST00000483099.5:ENST00000470492.5:ENST00000469451.1:ENST00000367208.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	31	2	2.78823	2.9959499999999997	3.20367	8.11145e-4	6.11481e-4	0.00952488	0.00818575
chr10	96521767	96521866	11640096	0	-	0.333333	(0.33,0.36]	chr10	886559	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.51887	2.9959350000000002	3.473	0.0358636	8.77304e-4	0.147298	0.0101202
chr2	61876164	61876234	2691410	0	-	0.457143	(0.455,0.49]	chr2	240555	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.90433	2.995595	4.08686	0.0185466	9.7689e-7	0.0932453	3.91836e-5
chr3	161241104	161241163	3857826	0	+	0.440678	(0.42,0.455]	chr3	327632	2	CDS	CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.36247	2.995515	3.62856	0.0462889	4.02604e-4	0.176878	0.00549837
chr3	161242507	161242580	3857841	0	+	0.438356	(0.42,0.455]	chr3	327638	1	CDS	CDS:EXON_MRNA	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.36247	2.995515	3.62856	0.0462889	4.02604e-4	0.176878	0.00549837
chrX	150793690	150793756	19265390	0	-	0.424242	(0.42,0.455]	chrX	1636655	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CD99L2	ENSG00000102181.21	ENST00000370377.8:ENST00000346693.8:ENST00000613030.4:ENST00000437787.6:ENST00000355149.8:ENST00000466436.5:ENST00000634795.1:ENST00000418547.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.36247	2.995515	3.62856	0.0462889	4.02604e-4	0.176878	0.00549837
chr2	130172624	130172677	2874044	0	-	0.415094	(0.39,0.42]	chr2	257128	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SMPD4	ENSG00000136699.20	ENST00000431183.6:ENST00000454468.5:ENST00000680298.1:ENST00000351288.10:ENST00000433118.5:ENST00000412570.5:ENST00000409031.5:ENST00000439886.5:ENST00000680401.1:ENST00000680679.1:ENST00000680810.1:ENST00000680987.1:ENST00000435455.6:ENST00000680196.1:ENST00000473720.5:ENST00000439029.5:ENST00000681660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.54172	2.995475	3.44923	0.00247353	0.00105208	0.0223024	0.0123035
chr3	10304098	10304172	4032319	0	-	0.459459	(0.455,0.49]	chr3	338581	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000476597.1:ENST00000490283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	49	2	2.74805	2.9954549999999998	3.24286	3.3051e-4	2.77105e-4	0.00470169	0.00444204
chr5	138518754	138518854	6862075	0	-	0.39	(0.36,0.39]	chr5	525160	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000512198.1:ENST00000572514.5:ENST00000507939.5:ENST00000514005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	1.66836	2.995365	4.32237	0.0474647	0.00273222	0.17993	0.0237575
chr12	865109	865194	12681204	0	+	0.576471	(0.53,0.59]	chr12	984062	1	CDS	CDS:EXON_MRNA:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.87264	2.995215	3.11779	0.00168899	5.11883e-4	0.0175515	0.00664583
chr7	5603862	5603946	8112104	0	+	0.607143	(0.59,1]	chr7	620033	1	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	75	2	2.20362	2.99519	3.78676	0.00565413	3.60514e-4	0.0412424	0.00544284
chr6	105376189	105376255	7869084	0	-	0.318182	(0.29,0.33]	chr6	602782	2	CDS	CDS:EXON_MRNA	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.74619	2.99503	4.24387	0.0509174	0.00263476	0.181793	0.0239118
chr1	211944783	211944876	1479885	0	-	0.44086	(0.42,0.455]	chr1	149331	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	INTS7	ENSG00000143493.13	ENST00000469606.5:ENST00000366994.8:ENST00000366993.7:ENST00000366992.7:ENST00000440600.6:ENST00000612340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	1.93033	2.994935	4.05954	0.0505055	0.00617886	0.181202	0.0439741
chr13	97339225	97339325	13857475	0	+	0.43	(0.42,0.455]	chr13	1086478	44	INTRON	INTRON	MBNL2	ENSG00000139793.19	ENST00000397601.5:ENST00000343600.8:ENST00000376673.7:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	1.93033	2.994935	4.05954	0.0505055	0.00617886	0.181202	0.0439741
chr7	30022664	30022740	8748572	0	-	0.434211	(0.42,0.455]	chr7	667478	1	CDS	CDS:EXON_MRNA:INTRON	FKBP14	ENSG00000106080.11	ENST00000222803.10:ENST00000419018.1:ENST00000412494.1:ENST00000479939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	1.93033	2.994935	4.05954	0.0505055	0.00617886	0.181202	0.0439741
chr7	139078551	139078602	9102377	0	-	0.431373	(0.42,0.455]	chr7	694566	1	CDS	CDS:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1:ENST00000460845.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.93033	2.994935	4.05954	0.0505055	0.00617886	0.181202	0.0439741
chr8	61202445	61202542	9357848	0	+	0.453608	(0.42,0.455]	chr8	715606	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	CLVS1:NPM1P6	ENSG00000177182.11:ENSG00000213881.3	ENST00000522621.1:ENST00000521088.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	16	2	1.93033	2.994935	4.05954	0.0505055	0.00617886	0.181202	0.0439741
chrX	119629404	119629491	19192121	0	-	0.448276	(0.42,0.455]	chrX	1631537	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5:ENST00000467310.1:ENST00000481072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	1.93033	2.994935	4.05954	0.0505055	0.00617886	0.181202	0.0439741
chr1	156138487	156138585	486166	0	+	0.714286	(0.59,1]	chr1	51299	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNA	ENSG00000160789.24	ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000368299.7:ENST00000448611.6:ENST00000473598.6:ENST00000506981.1:ENST00000683773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	89	2	2.42199	2.99478	3.56757	0.00475078	7.48524e-5	0.0367332	0.00142695
chr19	15835280	15835375	17246589	0	+	0.378947	(0.36,0.39]	chr19	1422765	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	11	71	2	2.57981	2.9946099999999998	3.40941	1.27759e-4	5.03355e-6	0.00221172	1.70872e-4
chr22	21450873	21450971	18302373	0	+	0.479592	(0.455,0.49]	chr22	1554129	43	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	15	105	2	2.43207	2.994475	3.55688	7.5049e-5	1.21905e-6	0.00143	5.21134e-5
chr3	5178976	5179073	3278248	0	+	0.309278	(0.29,0.33]	chr3	288772	3	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	42	2	2.29415	2.99439	3.69463	0.00128132	3.13406e-5	0.0136028	7.70685e-4
chr1	226985253	226985340	740589	0	+	0.574713	(0.53,0.59]	chr1	74757	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-1087E8.6:COQ8A	ENSG00000288674.1:ENSG00000163050.18	ENST00000366779.6:ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5:ENST00000479852.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	2.36991	2.9942349999999998	3.61856	0.0303021	0.00501452	0.129773	0.0370872
chr1	145911439	145911529	1269739	0	-	0.4	(0.39,0.42]	chr1	125415	2	UTR3	UTR3:EXON_MRNA	PEX11B	ENSG00000131779.11	ENST00000369306.8:ENST00000428634.1:ENST00000537888.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.49701	2.99423	3.49145	0.0350273	0.0339607	0.141505	0.141431
chr10	94603510	94603610	11202835	0	+	0.41	(0.39,0.42]	chr10	852111	15	INTRON	INTRON	RP11-119K6.6:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	11	2	2.49701	2.99423	3.49145	0.0350273	0.0339607	0.141505	0.141431
chr13	113264267	113264365	13908104	0	+	0.418367	(0.39,0.42]	chr13	1090321	8	UTR3	UTR3:EXON_MRNA	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000375440.9	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.49701	2.99423	3.49145	0.0350273	0.0339607	0.141505	0.141431
chr17	58491177	58491274	16614053	0	-	0.412371	(0.39,0.42]	chr17	1364856	18	UTR3	UTR3:EXON_MRNA	MTMR4	ENSG00000108389.10	ENST00000579925.5:ENST00000323456.9:ENST00000682306.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.49701	2.99423	3.49145	0.0350273	0.0339607	0.141505	0.141431
chr5	141515020	141515116	6875022	0	-	0.40625	(0.39,0.42]	chr5	526351	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	2.49701	2.99423	3.49145	0.0350273	0.0339607	0.141505	0.141431
chrX	3889751	3889850	18932683	0	-	0.40404	(0.39,0.42]	chrX	1613506	76	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	2.49701	2.99423	3.49145	0.0350273	0.0339607	0.141505	0.141431
chr1	50778814	50778914	1011364	0	-	0.38	(0.36,0.39]	chr1	104789	337	INTRON	INTRON	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.02118	2.9941750000000003	3.96717	0.0251625	6.17763e-5	0.117055	0.00122919
chr3	13353914	13354010	4046591	0	-	0.625	(0.59,1]	chr3	339637	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000479519.5:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.5215	2.99405	3.4666	0.032241	0.00133574	0.135671	0.0139317
chr9	125264008	125264090	10856283	0	-	0.463415	(0.455,0.49]	chr9	822398	3	EXON_PSEUDO	EXON_PSEUDO	RP11-65N13.6	ENSG00000214593.3	ENST00000453641.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	37	2	2.25667	2.994045	3.73142	0.00445666	2.35261e-4	0.0346553	0.00356397
chr1	30953818	30953899	916504	0	-	0.518519	(0.49,0.53]	chr1	96005	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.38097	2.99375	3.60653	0.0425419	4.50981e-4	0.167547	0.00605268
chr10	74129174	74129241	11575891	0	-	0.507463	(0.49,0.53]	chr10	881685	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1:ENST00000480373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	25	2	2.38097	2.99375	3.60653	0.0425419	4.50981e-4	0.167547	0.00605268
chr6	44229655	44229723	7161475	0	+	0.617647	(0.59,1]	chr6	553783	2	CDS	CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000643869.1:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000645692.1:ENST00000642777.1:ENST00000647460.1:ENST00000646582.1:ENST00000645607.1:ENST00000643152.1:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	2.53147	2.9936350000000003	3.4558	0.00807544	1.35447e-4	0.0531324	0.00231202
chrX	3851139	3851239	18932290	0	-	0.35	(0.33,0.36]	chrX	1613471	4	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	2.51797	2.993525	3.46908	0.0303594	0.00114872	0.130016	0.0130528
chr1	1048962	1049059	2365	0	+	0.670103	(0.59,1]	chr1	539	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000492947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	111	2	1.83139	2.9934849999999997	4.15558	0.0225	2.34619e-6	0.106723	8.24647e-5
chr21	29066715	29066777	18202049	0	-	0.322581	(0.29,0.33]	chr21	1544743	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	76	2	2.71487	2.99334	3.27181	3.17554e-5	2.78403e-6	7.05797e-4	1.04532e-4
chr22	41636181	41636251	18381429	0	+	0.342857	(0.33,0.36]	chr22	1564683	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.78785	2.993285	3.19872	0.00115378	6.97647e-5	0.0130851	0.00134581
chr7	135977272	135977359	9086057	0	-	0.609195	(0.59,1]	chr7	693666	3	UTR5	UTR5:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	9	159	2	2.64512	2.993235	3.34135	8.60995e-4	7.3822e-6	0.0105856	2.152e-4
chr1	35420470	35420569	137477	0	+	0.464646	(0.455,0.49]	chr1	16958	9	UTR3	UTR3:EXON_MRNA	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr1	180019948	180020044	581492	0	+	0.458333	(0.455,0.49]	chr1	60339	1	CDS	CDS:EXON_MRNA	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr11	34146460	34146550	11905972	0	+	0.466667	(0.455,0.49]	chr11	909748	4	UTR3	UTR3:EXON_MRNA	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr16	23523875	23523974	15894971	0	-	0.484848	(0.455,0.49]	chr16	1272199	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EARS2	ENSG00000103356.18	ENST00000449606.7:ENST00000674054.1:ENST00000564987.1:ENST00000564776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr20	38012662	38012758	17962675	0	-	0.46875	(0.455,0.49]	chr20	1522288	13	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1:ENST00000487362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr22	41468601	41468653	18519543	0	-	0.461538	(0.455,0.49]	chr22	1581221	1	CDS_START	CDS_START:CDS:EXON_MRNA	PHF5A	ENSG00000100410.8	ENST00000216252.4:ENST00000459687.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr5	37289126	37289225	6539914	0	-	0.464646	(0.455,0.49]	chr5	506493	11	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr7	151214878	151214946	9129929	0	-	0.485294	(0.455,0.49]	chr7	697858	1	CDS	CDS:EXON_MRNA	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr9	19013185	19013285	10594216	0	-	0.47	(0.455,0.49]	chr9	801518	619	INTRON	INTRON	SAXO1	ENSG00000155875.15	ENST00000649457.1:ENST00000380534.9:ENST00000542071.2:ENST00000380530.1:ENST00000583128.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chrX	134781820	134781917	19245606	0	-	0.474227	(0.455,0.49]	chrX	1634534	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PABIR2	ENSG00000156504.17	ENST00000343004.10:ENST00000370790.5:ENST00000298090.10:ENST00000478384.5:ENST00000486347.5:ENST00000465128.3:ENST00000493333.5:ENST00000611027.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.50904	2.992875	3.47671	0.0368644	0.0310515	0.145024	0.131262
chr16	67868500	67868599	15712210	0	+	0.545455	(0.53,0.59]	chr16	1250694	1	CDS	CDS:EXON_MRNA	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.37399	2.99266	3.61133	0.0126178	4.55298e-4	0.0717599	0.00608573
chrX	154652128	154652228	19278996	0	-	0.57	(0.53,0.59]	chrX	1638649	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTAG2	ENSG00000126890.14	ENST00000247306.4:ENST00000369585.4	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.37399	2.99266	3.61133	0.0126178	4.55298e-4	0.0717599	0.00608573
chr13	46148351	46148447	14009832	0	-	0.479167	(0.455,0.49]	chr13	1098536	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5:ENST00000494531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	58	2	2.26628	2.9926399999999997	3.719	0.00132943	1.42274e-5	0.0139317	4.02509e-4
chr10	5773841	5773941	11352537	0	-	0.34	(0.33,0.36]	chr10	865749	1	CDS	CDS:EXON_MRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000447751.5:ENST00000380181.7:ENST00000456041.5	protein_coding	protein_coding	protein_coding	protein_coding	13	86	2	2.9409	2.99259	3.04428	1.68703e-4	1.33615e-6	0.00297945	5.12039e-5
chr9	112252677	112252732	10803219	0	-	0.418182	(0.39,0.42]	chr9	818459	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.70591	2.9924749999999998	3.27904	0.0185716	3.95466e-5	0.0932453	8.52304e-4
chr1	84501825	84501844	1130765	0	-	0.210526	[0,0.29]	chr1	112604	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000487806.5:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	42	2	2.20927	2.99186	3.77445	0.00136133	2.37823e-5	0.0141134	6.17999e-4
chr6	27147321	27147415	7104166	0	+	0.606383	(0.59,1]	chr6	543293	2	CDS	CDS:EXON_MRNA:PRIMIRNA	H2AC12:MIR3143	ENSG00000274997.2:ENSG00000265565.1	ENST00000377459.3:ENST00000584253.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	13	211	2	2.58351	2.991845	3.40018	1.60239e-4	6.19968e-6	0.00263962	2.03001e-4
chr1	202727866	202727963	1451703	0	-	0.381443	(0.36,0.39]	chr1	145774	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	2.48922	2.991815	3.49441	0.0110399	7.81559e-4	0.0652374	0.00927662
chr17	81512751	81512851	16707893	0	-	0.72	(0.59,1]	chr17	1377347	5	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	344	2	2.50251	2.9918050000000003	3.4811	1.11663e-4	3.19299e-7	0.00213525	1.50904e-5
chr16	75568036	75568113	15741864	0	+	0.428571	(0.42,0.455]	chr16	1254260	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	GABARAPL2	ENSG00000034713.8	ENST00000565057.5:ENST00000037243.7:ENST00000563744.1:ENST00000568455.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.8096	2.991785	3.17397	0.0031821	0.00253237	0.0267094	0.0233955
chr16	88738368	88738440	16074683	0	-	0.680556	(0.59,1]	chr16	1291760	3	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.9891200000000002	2.99175	2.99438	0.00823979	0.00776449	0.0540283	0.050813
chr4	99948087	99948180	5551578	0	-	0.333333	(0.33,0.36]	chr4	443717	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	39	2	2.63456	2.99144	3.34832	0.00707461	2.58174e-5	0.0478528	5.98209e-4
chr11	118754811	118754887	12625478	0	-	0.421053	(0.42,0.455]	chr11	979530	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	42	2	2.68545	2.991325	3.2972	0.00135767	1.93851e-4	0.0146849	0.00307904
chr7	106284884	106284961	8978240	0	-	0.714286	(0.59,1]	chr7	687143	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000680152.1:ENST00000680129.1:ENST00000681223.1:ENST00000679717.1:ENST00000354289.9:ENST00000491027.6:ENST00000489358.5:ENST00000441045.6:ENST00000417537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	55	2	2.80637	2.991265	3.17616	0.00434232	0.00274489	0.0339139	0.0238522
chr17	1675715	1675812	16401545	0	-	0.484536	(0.455,0.49]	chr17	1334917	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	2.8878	2.9911250000000003	3.09445	6.1765e-4	1.42924e-4	0.00822794	0.00240945
chr8	26370223	26370313	9238344	0	+	0.455556	(0.455,0.49]	chr8	707537	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000524169.5:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000518215.5:ENST00000665751.1:ENST00000518890.5:ENST00000517754.1:ENST00000518208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	28	2	2.40664	2.990945	3.57525	0.0123662	5.24878e-4	0.0705839	0.00677371
chr5	179707170	179707190	6414222	0	+	0.3	(0.29,0.33]	chr5	499148	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	68	2	2.27411	2.99092	3.70773	0.00686811	8.88808e-8	0.0468903	5.05278e-6
chr15	80978722	80978821	15405871	0	-	0.333333	(0.33,0.36]	chr15	1218138	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MESD	ENSG00000117899.11	ENST00000619987.4:ENST00000561312.5:ENST00000422879.3:ENST00000560244.5:ENST00000560189.1:ENST00000559537.1:ENST00000261758.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.97606	2.990895	3.00573	0.00871774	0.00630535	0.0558165	0.044701
chrX	141118136	141118228	19261061	0	-	0.336957	(0.33,0.36]	chrX	1636047	1	INTRON	INTRON	LDOC1	ENSG00000182195.9	ENST00000670989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	26	2	2.97592	2.990825	3.00573	0.00630535	4.1482e-4	0.044701	0.00607555
chr19	16517990	16518087	17491214	0	-	0.298969	(0.29,0.33]	chr19	1466412	2	UTR3	UTR3:EXON_MRNA:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	2.35474	2.990785	3.62683	0.00297618	6.18968e-4	0.0254769	0.00822794
chr5	37351272	37351356	6540577	0	-	0.369048	(0.36,0.39]	chr5	506664	2	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.2842	2.990655	3.69711	0.0049656	1.63058e-5	0.0381176	4.12921e-4
chr10	95687260	95687355	11633684	0	-	0.536842	(0.53,0.59]	chr10	886133	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCTN3	ENSG00000119977.22	ENST00000680353.1:ENST00000265993.13:ENST00000371217.10:ENST00000680144.1:ENST00000614499.5:ENST00000681739.1:ENST00000680697.1:ENST00000680709.1:ENST00000679984.1:ENST00000681928.1:ENST00000430368.6:ENST00000679485.1:ENST00000371209.5:ENST00000681127.1:ENST00000679566.1:ENST00000497399.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.36244	2.9905	3.61856	0.0303021	0.0131162	0.129773	0.073569
chr11	6682217	6682309	12250387	0	-	0.576087	(0.53,0.59]	chr11	946965	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL17	ENSG00000158042.9	ENST00000288937.7:ENST00000532676.1:ENST00000529958.1:ENST00000532203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.36244	2.9905	3.61856	0.0303021	0.0131162	0.129773	0.073569
chr22	39947009	39947106	18372530	0	+	0.546392	(0.53,0.59]	chr22	1563484	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GRAP2	ENSG00000100351.17	ENST00000344138.9:ENST00000420971.5:ENST00000478445.1:ENST00000461082.1:ENST00000407075.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.36244	2.9905	3.61856	0.0303021	0.0131162	0.129773	0.073569
chr3	195783455	195783554	4661101	0	-	0.575758	(0.53,0.59]	chr3	385270	48	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.36244	2.9905	3.61856	0.0303021	0.0131162	0.129773	0.073569
chrX	48913275	48913370	19063601	0	-	0.473684	(0.455,0.49]	chrX	1620588	2	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.77609	2.990385	3.20468	2.98403e-4	6.38295e-5	0.00471684	0.00125289
chr19	28418863	28418958	17525050	0	-	0.410526	(0.39,0.42]	chr19	1470896	5	EXON_LNCRNA	EXON_LNCRNA	AC005307.1	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	4	21	2	1.64934	2.9903199999999996	4.3313	0.0412247	0.00209984	0.155868	0.0204266
chr6	83175961	83176040	7817287	0	-	0.417722	(0.39,0.42]	chr6	598727	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PGM3	ENSG00000013375.16	ENST00000513973.6:ENST00000512866.5:ENST00000650640.1:ENST00000616566.5:ENST00000283977.9:ENST00000651425.1:ENST00000651698.1:ENST00000650642.1:ENST00000651204.1:ENST00000652222.1:ENST00000506587.5:ENST00000509219.2:ENST00000652468.1:ENST00000507404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.64934	2.9903199999999996	4.3313	0.0412247	0.00209984	0.155868	0.0204266
chr11	126263132	126263230	12645135	0	-	0.520408	(0.49,0.53]	chr11	981826	3	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.8671	2.990195	3.11329	0.0100489	3.3061e-5	0.0623334	7.31089e-4
chr17	28327888	28327987	16175274	0	+	0.40404	(0.39,0.42]	chr17	1304982	12	UTR3	UTR3:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.784	2.98994	3.19588	0.00321212	0.00261393	0.0280721	0.0230705
chr5	88202957	88203057	6685285	0	-	0.41	(0.39,0.42]	chr5	515497	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.784	2.98994	3.19588	0.00321212	0.00261393	0.0280721	0.0230705
chr1	85653563	85653662	1137320	0	-	0.50505	(0.49,0.53]	chr1	113123	43	UTR3	UTR3:EXON_MRNA	ZNHIT6	ENSG00000117174.11	ENST00000370574.4:ENST00000431532.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.69633	2.9898249999999997	4.28332	0.0531914	0.00338762	0.184818	0.0288632
chr2	231807935	231808032	2426594	0	+	0.494845	(0.49,0.53]	chr2	218749	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000461350.5:ENST00000488111.1:ENST00000449174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	1.69633	2.9898249999999997	4.28332	0.0531914	0.00338762	0.184818	0.0288632
chr1	182878096	182878173	595088	0	+	0.597403	(0.59,1]	chr1	61637	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000474446.5:ENST00000485081.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	1.96394	2.989695	4.01545	0.0453144	0.0251889	0.174798	0.114168
chr8	144085657	144085743	9650273	0	+	0.651163	(0.59,1]	chr8	731499	2	CDS	CDS:EXON_MRNA	GPAA1	ENSG00000197858.11	ENST00000355091.9:ENST00000361036.10:ENST00000529638.1:ENST00000530796.1:ENST00000534072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	1.96394	2.989695	4.01545	0.0453144	0.0251889	0.174798	0.114168
chr10	119898426	119898514	11285770	0	+	0.465909	(0.455,0.49]	chr10	859912	1	CDS	CDS:EXON_MRNA	SEC23IP	ENSG00000107651.14	ENST00000369075.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.95898	2.9896900000000004	4.0204	0.047107	0.00736097	0.172269	0.0490627
chr3	48926141	48926237	3458381	0	+	0.322917	(0.29,0.33]	chr3	301759	8	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	20	2	2.49936	2.9896849999999997	3.48001	0.00917022	0.00126219	0.0580029	0.013837
chr8	47852728	47852784	9816299	0	-	0.321429	(0.29,0.33]	chr8	742647	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.49936	2.9896849999999997	3.48001	0.00917022	0.00126219	0.0580029	0.013837
chr1	160306423	160306493	1328856	0	-	0.414286	(0.39,0.42]	chr1	136045	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	2.92895	2.989625	3.0503	0.00570576	3.36969e-4	0.0424438	0.00475537
chr7	98386094	98386192	8943307	0	-	0.44898	(0.42,0.455]	chr7	682611	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	BAIAP2L1:RPS3AP26	ENSG00000006453.14:ENSG00000214389.2	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1:ENST00000398259.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	20	165	2	2.47796	2.98961	3.50126	7.68321e-5	1.43257e-8	0.00160981	1.05822e-6
chr19	39433513	39433569	17563225	0	-	0.5	(0.49,0.53]	chr19	1475627	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000602153.5:ENST00000595386.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	180	2	1.82487	2.98949	4.15411	0.00224873	1.76574e-10	0.021386	2.24666e-8
chr3	98580111	98580206	4319538	0	-	0.305263	(0.29,0.33]	chr3	360252	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	95	2	2.1358	2.9894350000000003	3.84307	0.00165938	7.52738e-9	0.0172963	6.09037e-7
chr2	161367843	161367903	2164953	0	+	0.4	(0.39,0.42]	chr2	199368	2	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.74829	2.98943	3.23057	8.96426e-4	3.34829e-4	0.0102618	0.00509483
chr3	139348241	139348324	3772087	0	+	0.349398	(0.33,0.36]	chr3	322562	2	CDS	CDS:EXON_MRNA	MRPS22	ENSG00000175110.13	ENST00000495075.5:ENST00000680020.1:ENST00000310776.9:ENST00000498505.5:ENST00000480938.5:ENST00000465373.5:ENST00000466690.5:ENST00000486705.1:ENST00000478464.5:ENST00000483545.1:ENST00000480644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.07736	2.98943	3.9015	0.0442037	9.11613e-5	0.172163	0.00168187
chr13	22696482	22696574	13928531	0	-	0.641304	(0.59,1]	chr13	1092772	6	EXON_PSEUDO	EXON_PSEUDO	FTH1P7	ENSG00000232187.1	ENST00000450676.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	231	2	2.62678	2.9894	3.35202	5.07578e-4	1.20662e-6	0.00710966	4.6842e-5
chr5	138466756	138466850	6244781	0	+	0.531915	(0.53,0.59]	chr5	486656	1	CDS	CDS:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.50447	2.98933	3.47419	0.0301162	8.75273e-4	0.130016	0.0106963
chr15	39922781	39922833	15230333	0	-	0.442308	(0.42,0.455]	chr15	1198265	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200305.1	ENST00000363435.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	2	21	2	2.66697	2.98929	3.31161	0.0190326	0.00186138	0.0958835	0.018635
chr5	95653116	95653214	6107337	0	+	0.428571	(0.42,0.455]	chr5	478142	1	CDS	CDS:EXON_MRNA:INTRON	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000311364.8:ENST00000458310.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.66697	2.98929	3.31161	0.0190326	0.00186138	0.0958835	0.018635
chrX	136875257	136875320	19250728	0	-	0.380952	(0.36,0.39]	chrX	1635453	1	CDS	CDS:UTR3:EXON_MRNA	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	48	2	2.09786	2.9892849999999997	3.88071	0.00658605	4.48476e-6	0.0454205	1.41623e-4
chr11	119336522	119336620	12163913	0	+	0.520408	(0.49,0.53]	chr11	938094	2	UTR3	UTR3:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.64528	2.98926	3.33324	0.0202736	0.00162947	0.0984041	0.0169972
chr12	45866942	45867042	12851848	0	+	0.52	(0.49,0.53]	chr12	998029	56	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5:ENST00000457135.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.64528	2.98926	3.33324	0.0202736	0.00162947	0.0984041	0.0169972
chr3	129277324	129277424	3730637	0	+	0.54	(0.53,0.59]	chr3	318987	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000514478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.515	2.9892450000000004	3.46349	0.0292633	9.2216e-4	0.129773	0.0104432
chr9	128987588	128987652	10482637	0	+	0.53125	(0.53,0.59]	chr9	791093	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	27	2	2.515	2.9892450000000004	3.46349	0.0292633	9.2216e-4	0.129773	0.0104432
chr1	145996016	145996091	1270285	0	-	0.533333	(0.53,0.59]	chr1	125551	1	CDS	CDS:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	20	157	2	1.77379	2.9889	4.20401	0.00202493	6.00311e-9	0.0191427	5.43986e-7
chr1	153665219	153665277	1298438	0	-	0.413793	(0.39,0.42]	chr1	130400	1	CDS	CDS:EXON_MRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	2.67296	2.9888399999999997	3.30472	0.00159022	8.54292e-6	0.0168452	2.41736e-4
chr17	7224018	7224069	16103654	0	+	0.529412	(0.49,0.53]	chr17	1296164	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACADVL	ENSG00000072778.20	ENST00000543245.6:ENST00000322910.9:ENST00000350303.9:ENST00000356839.10:ENST00000583858.5:ENST00000585203.6:ENST00000579425.5:ENST00000542255.6:ENST00000579546.1:ENST00000578711.1:ENST00000583850.5:ENST00000583074.5:ENST00000579894.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.72252	2.98883	3.25514	0.0161474	0.00227467	0.0860154	0.0209546
chr3	33132554	33132627	3397715	0	+	0.493151	(0.49,0.53]	chr3	295495	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1:ENST00000485310.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.72252	2.98883	3.25514	0.0161474	0.00227467	0.0860154	0.0209546
chr6	32169965	32170029	7664660	0	-	0.546875	(0.53,0.59]	chr6	586100	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	AGPAT1:MIR6721	ENSG00000204310.13:ENSG00000284469.1	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000617181.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	5	48	2	2.66813	2.98878	3.30943	0.0018255	5.09538e-4	0.0183913	0.00662599
chr21	8210393	8210492	18041121	0	+	0.545455	(0.53,0.59]	chr21	1530812	11	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2845	25746	2	2.90333	2.988575	3.07382	4.37266e-9	8.04607e-10	4.11781e-7	8.63466e-8
chr9	127692144	127692243	10475573	0	+	0.616162	(0.59,1]	chr9	789241	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.84944	2.98857	3.1277	0.0128238	0.00490589	0.0719798	0.0366648
chr17	17814327	17814410	16465688	0	-	0.686747	(0.59,1]	chr17	1344687	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	SREBF1:MIR33B	ENSG00000072310.18:ENSG00000207839.1	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000486311.5:ENST00000478616.1:ENST00000385104.1:ENST00000447641.5:ENST00000581707.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	41	2	2.9228	2.9885	3.0542	0.00981698	0.00663549	0.0612992	0.0456243
chr8	123344883	123344976	10057120	0	-	0.387097	(0.36,0.39]	chr8	756633	1	CDS	CDS:UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	46	2	2.51807	2.988485	3.4589	5.95527e-4	9.87237e-5	0.00746617	0.00194682
chr1	35600912	35601010	938312	0	-	0.357143	(0.33,0.36]	chr1	98692	15	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.31697	2.988445	3.65992	0.00966431	3.45596e-4	0.0606263	0.00486237
chr11	85021461	85021558	12518029	0	-	0.43299	(0.42,0.455]	chr11	971919	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	DLG2:HNRNPCP6	ENSG00000150672.18:ENSG00000213305.3	ENST00000376104.7:ENST00000650630.1:ENST00000527088.1:ENST00000525816.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	21	2	2.91373	2.9883300000000004	3.06293	0.00892357	0.00492128	0.0567495	0.0366648
chr17	44063867	44063934	16556356	0	-	0.432836	(0.42,0.455]	chr17	1358879	2	CDS	CDS:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.91373	2.9883300000000004	3.06293	0.00892357	0.00492128	0.0567495	0.0366648
chr9	111440371	111440446	10798981	0	-	0.44	(0.42,0.455]	chr9	817950	1	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.91373	2.9883300000000004	3.06293	0.00892357	0.00492128	0.0567495	0.0366648
chr17	81921126	81921224	16710041	0	-	0.581633	(0.53,0.59]	chr17	1377880	30	UTR3	UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.8006	2.98801	3.17542	0.00233666	3.78824e-4	0.0221314	0.00525548
chr12	113390272	113390369	13101757	0	+	0.494845	(0.49,0.53]	chr12	1022448	18	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.30121	2.987895	3.67458	0.00182399	1.89038e-5	0.0176208	5.12059e-4
chr15	59117227	59117297	14959922	0	+	0.428571	(0.42,0.455]	chr15	1175704	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	36	2	2.36247	2.98785	3.61323	0.0462889	2.83914e-5	0.176878	6.46853e-4
chr2	85319896	85319995	2770109	0	-	0.50505	(0.49,0.53]	chr2	245643	20	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.64246	2.98785	3.33324	0.00162947	5.94013e-4	0.0169972	0.00745979
chr13	28662409	28662507	13661128	0	+	0.428571	(0.42,0.455]	chr13	1076720	1	CDS	CDS:UTR5:EXON_MRNA	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.40664	2.9875749999999996	3.56851	0.00445101	3.9883e-5	0.0340751	9.51945e-4
chr5	111128741	111128839	6144730	0	+	0.255102	[0,0.29]	chr5	480259	20	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.93716	2.98757	4.03798	0.0548436	7.64187e-5	0.189511	0.00160163
chr11	34086358	34086413	11905344	0	+	0.527273	(0.49,0.53]	chr11	909543	2	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	2.83191	2.9875249999999998	3.14314	1.99461e-4	9.45216e-5	0.00316009	0.00188394
chr15	84669861	84669942	15420852	0	-	0.45679	(0.455,0.49]	chr15	1219606	5	UTR3	UTR3:EXON_MRNA	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000559376.1:ENST00000558217.5:ENST00000558924.1:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.53523	2.98742	3.43961	0.00270505	8.42878e-5	0.0243939	0.0015859
chr8	48060828	48060927	9316852	0	+	0.272727	[0,0.29]	chr8	713641	1	UTR3	UTR3:EXON_MRNA	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5:ENST00000520809.1:ENST00000520595.2:ENST00000521628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	54	2	2.91569	2.9873849999999997	3.05908	1.30246e-4	2.49522e-5	0.00243336	5.81911e-4
chr1	29018296	29018369	120602	0	+	0.452055	(0.42,0.455]	chr1	14623	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	57	2	2.94325	2.98736	3.03147	2.02875e-4	1.00632e-4	0.0034429	0.00181216
chr17	68037034	68037132	16333745	0	+	0.326531	(0.29,0.33]	chr17	1325105	12	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	34	2	2.71017	2.987195	3.26422	8.23733e-4	2.56761e-4	0.010214	0.00385453
chr1	92832063	92832114	354049	0	+	0.686275	(0.59,1]	chr1	34806	2	UTR5	UTR5:EXON_MRNA	RPL5	ENSG00000122406.14	ENST00000645300.1:ENST00000370321.8:ENST00000645119.1:ENST00000470843.5:ENST00000646852.1:ENST00000315741.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	943	2	2.35755	2.987065	3.61658	5.69657e-5	5.73885e-9	0.00126419	4.8257e-7
chr11	118600800	118600887	12159734	0	+	0.528736	(0.49,0.53]	chr11	937275	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ARCN1	ENSG00000095139.14	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	15	124	2	2.80395	2.98699	3.17003	1.56203e-5	1.6419e-6	4.37822e-4	6.06681e-5
chr2	189923335	189923432	2274545	0	+	0.453608	(0.42,0.455]	chr2	206588	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	4	35	2	2.81175	2.98699	3.16223	0.00227654	4.45084e-4	0.0209546	0.00633715
chr10	5768298	5768384	11352480	0	-	0.476744	(0.455,0.49]	chr10	865744	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	2.40664	2.986975	3.56731	0.0123662	5.31643e-6	0.0705839	1.62817e-4
chr4	17625361	17625459	4734400	0	+	0.377551	(0.36,0.39]	chr4	392802	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.78659	2.986505	3.18642	0.0132982	0.00359152	0.0740932	0.0302391
chr11	47788243	47788305	12389435	0	-	0.532258	(0.53,0.59]	chr11	957419	2	CDS	CDS:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.14885	2.98646	3.82407	0.0262993	0.0179666	0.117164	0.0918323
chr17	48544714	48544811	16577799	0	-	0.56701	(0.53,0.59]	chr17	1361792	3	CDS	CDS:EXON_MRNA	HOXB2	ENSG00000173917.11	ENST00000330070.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.14885	2.98646	3.82407	0.0262993	0.0179666	0.117164	0.0918323
chr3	47414179	47414248	4160666	0	-	0.550725	(0.53,0.59]	chr3	348087	1	CDS	CDS:UTR3:EXON_MRNA	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.14885	2.98646	3.82407	0.0262993	0.0179666	0.117164	0.0918323
chr3	195783355	195783455	4661100	0	-	0.54	(0.53,0.59]	chr3	385270	47	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.14885	2.98646	3.82407	0.0262993	0.0179666	0.117164	0.0918323
chr4	887363	887462	5276466	0	-	0.585859	(0.53,0.59]	chr4	424433	17	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.17	ENST00000314167.9:ENST00000511163.5:ENST00000618573.4:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.14885	2.98646	3.82407	0.0262993	0.0179666	0.117164	0.0918323
chrX	71060327	71060425	19106533	0	-	0.540816	(0.53,0.59]	chrX	1625280	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SNX12	ENSG00000147164.12	ENST00000622259.4:ENST00000483560.1:ENST00000374274.8:ENST00000622277.4:ENST00000490561.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.14885	2.98646	3.82407	0.0262993	0.0179666	0.117164	0.0918323
chr2	239990034	239990134	3245666	0	-	0.5	(0.49,0.53]	chr2	286030	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.03065	2.98621	3.94177	0.0189484	0.0104929	0.0958835	0.063428
chr1	180863790	180863874	586397	0	+	0.464286	(0.455,0.49]	chr1	60719	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3:ENST00000498177.1:ENST00000464817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.30139	2.985905	3.67042	0.0530131	2.46218e-6	0.195536	8.56868e-5
chr11	63629318	63629405	12414812	0	-	0.448276	(0.42,0.455]	chr11	962193	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8:ENST00000538786.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.1201	2.9858000000000002	3.8515	0.0119089	0.00744913	0.0686664	0.0492835
chr2	38749562	38749662	2605200	0	-	0.47	(0.455,0.49]	chr2	234694	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	78	2	2.47728	2.98576	3.49424	1.61732e-4	9.02087e-6	0.00288682	2.53429e-4
chr16	81710878	81710976	15772098	0	+	0.632653	(0.59,1]	chr16	1255597	12	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.11074	2.98567	3.8606	0.0305	2.2997e-4	0.130204	0.00352524
chr22	17704923	17705022	18290921	0	+	0.292929	(0.29,0.33]	chr22	1552140	13	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	41	2	2.80161	2.985615	3.16962	0.00415667	2.42328e-5	0.0325842	5.68668e-4
chr12	54240257	54240356	13342929	0	-	0.393939	(0.39,0.42]	chr12	1049602	89	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	2.58366	2.98552	3.38738	3.97696e-4	1.35138e-4	0.0054589	0.0025017
chr16	1962225	1962270	15823810	0	-	0.488889	(0.455,0.49]	chr16	1261852	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	203	2	2.43773	2.98546	3.53319	1.52905e-5	1.00239e-8	4.29041e-4	7.77316e-7
chrX	107639386	107639478	18813823	0	+	0.48913	(0.455,0.49]	chrX	1603243	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PRPS1	ENSG00000147224.13	ENST00000643795.2:ENST00000675304.1:ENST00000645638.1:ENST00000372418.4:ENST00000372435.10:ENST00000644642.1:ENST00000674826.1:ENST00000372419.3:ENST00000645903.1:ENST00000674525.1:ENST00000676092.1:ENST00000674843.1:ENST00000675046.1:ENST00000675720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.23479	2.98534	3.73589	0.0209335	2.30579e-4	0.101282	0.00382267
chr10	79354140	79354239	11148690	0	+	0.424242	(0.42,0.455]	chr10	847447	4	UTR3	UTR3:EXON_MRNA	PPIF	ENSG00000108179.14	ENST00000225174.8	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.34191	2.985235	3.62856	0.0159091	4.02604e-4	0.0854674	0.00549837
chr2	47799188	47799287	1788193	0	+	0.424242	(0.42,0.455]	chr2	172666	3	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.34191	2.985235	3.62856	0.0159091	4.02604e-4	0.0854674	0.00549837
chr9	94460466	94460562	10367801	0	+	0.302083	(0.29,0.33]	chr9	780591	12	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	1.71387	2.985235	4.2566	0.0355849	0.00303129	0.147262	0.0257942
chrX	12820723	12820803	18584385	0	+	0.45	(0.42,0.455]	chrX	1587255	2	CDS	CDS:EXON_MRNA	PRPS2	ENSG00000101911.13	ENST00000398491.6:ENST00000380668.10:ENST00000461630.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.34191	2.985235	3.62856	0.0159091	4.02604e-4	0.0854674	0.00549837
chr4	144186728	144186828	5697321	0	-	0.32	(0.29,0.33]	chr4	451589	461	INTRON	INTRON	RP11-1289C17.1	ENSG00000285783.1	ENST00000650526.1	lncRNA	lncRNA	lncRNA	lncRNA	6	38	2	2.83831	2.985215	3.13212	0.00551048	8.93913e-5	0.0414592	0.00165853
chr1	220151250	220151350	1511878	0	-	0.37	(0.36,0.39]	chr1	151210	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RAB3GAP2	ENSG00000118873.16	ENST00000358951.7:ENST00000491005.5:ENST00000474966.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.38564	2.9852	3.58476	0.0476159	5.01956e-4	0.17993	0.00653592
chr10	74103873	74103928	11117495	0	+	0.363636	(0.36,0.39]	chr10	846269	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.38564	2.9852	3.58476	0.0476159	5.01956e-4	0.17993	0.00653592
chr8	99892021	99892052	9970737	0	-	0.419355	(0.39,0.42]	chr8	752101	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000520271.5:ENST00000524245.5:ENST00000522940.5:ENST00000518171.5:ENST00000523016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	2.25245	2.9851900000000002	3.71793	0.00427758	1.58821e-5	0.0332717	4.4403e-4
chrX	1386511	1386601	18925567	0	-	0.6	(0.59,1]	chrX	1612947	5	UTR3	UTR3:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	20	349	2	2.66642	2.9849699999999997	3.30352	1.63374e-4	3.59039e-7	0.00291239	1.66134e-5
chr3	33813568	33813628	3399341	0	+	0.416667	(0.39,0.42]	chr3	295658	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000435909.5:ENST00000430877.5:ENST00000413073.1:ENST00000307296.8:ENST00000477798.5:ENST00000498147.5:ENST00000484478.5:ENST00000494810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	55	2	2.27012	2.98494	3.69976	0.00945558	1.95428e-6	0.0594007	7.00948e-5
chr13	45341140	45341212	14005975	0	-	0.722222	(0.59,1]	chr13	1098106	2	UTR5	UTR5:EXON_MRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000490277.1:ENST00000379055.5:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	177	2782	2	2.50457	2.98473	3.46489	7.63139e-6	4.48021e-9	2.4151e-4	3.87376e-7
chr5	177442022	177442119	6407649	0	+	0.525773	(0.49,0.53]	chr5	498275	3	UTR3	UTR3:EXON_MRNA	GRK6	ENSG00000198055.11	ENST00000355472.10:ENST00000393576.7:ENST00000528793.5:ENST00000515666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.95291	2.98454	3.01617	0.00119735	8.62231e-4	0.0134293	0.0100487
chr2	10129482	10129579	1629049	0	+	0.402062	(0.39,0.42]	chr2	161739	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.74243	2.984525	3.22662	0.00369167	0.00257296	0.030936	0.0229363
chr14	99510879	99510977	14481782	0	+	0.540816	(0.53,0.59]	chr14	1131385	2	UTR3	UTR3:EXON_MRNA:INTRON	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.515	2.98452	3.45404	0.0292633	1.27275e-5	0.129773	3.35074e-4
chr5	163442373	163442465	6343412	0	+	0.347826	(0.33,0.36]	chr5	494005	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000514367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	82	2	2.49264	2.98431	3.47598	5.92122e-4	2.46273e-7	0.0080222	1.211e-5
chr13	25341923	25342023	13647976	0	+	0.29	[0,0.29]	chr13	1075929	19	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.80134	2.984305	3.16727	0.0049344	4.54416e-4	0.0379087	0.00608573
chr17	67945591	67945683	16333326	0	+	0.521739	(0.49,0.53]	chr17	1325046	3	CDS	CDS:EXON_MRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	2.64189	2.9842750000000002	3.32666	8.30874e-5	2.88212e-5	0.00156953	7.23034e-4
chr1	161440879	161440937	1333604	0	-	0.672414	(0.59,1]	chr1	136937	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-122G18.10:RP11-122G18.11	ENSG00000283360.1:ENSG00000283317.1	ENST00000637155.1:ENST00000636824.1	lncRNA	lncRNA	lncRNA	lncRNA	290	4757	2	2.78624	2.9842649999999997	3.18229	6.41891e-7	4.37538e-8	2.74475e-5	3.03225e-6
chr19	583212	583306	17188344	0	+	0.62766	(0.59,1]	chr19	1410791	5	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	349	2	2.69555	2.98426	3.27297	1.47923e-5	4.1759e-6	3.80699e-4	1.46446e-4
chr16	69742516	69742601	15995046	0	-	0.588235	(0.53,0.59]	chr16	1284253	2	CDS	CDS:UTR3:EXON_MRNA	NOB1	ENSG00000141101.13	ENST00000268802.10:ENST00000569871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.16037	2.984215	3.80806	0.0254312	1.65022e-4	0.117089	0.00269147
chrX	40074691	40074789	19045139	0	-	0.530612	(0.53,0.59]	chrX	1618754	25	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.16037	2.984215	3.80806	0.0254312	1.65022e-4	0.117089	0.00269147
chr5	10290662	10290762	6447005	0	-	0.5	(0.49,0.53]	chr5	502190	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000510532.5:ENST00000511963.5:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	81	2	2.68041	2.9841699999999998	3.28793	4.90905e-4	3.28736e-6	0.00688814	1.08855e-4
chr1	46278512	46278608	981813	0	-	0.5625	(0.53,0.59]	chr1	103497	12	UTR3	UTR3:EXON_MRNA:INTRON	LRRC41	ENSG00000132128.17	ENST00000496156.5:ENST00000617190.5:ENST00000343304.10:ENST00000617760.4:ENST00000615587.4:ENST00000472710.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr16	69119342	69119439	15993737	0	-	0.546392	(0.53,0.59]	chr16	1284021	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5:ENST00000519534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr22	29356520	29356616	18465055	0	-	0.572917	(0.53,0.59]	chr22	1575144	2	CDS	CDS:EXON_MRNA	AP1B1	ENSG00000100280.17	ENST00000357586.7:ENST00000432560.6:ENST00000405198.6:ENST00000317368.11:ENST00000421126.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr22	42163941	42164040	18521197	0	-	0.565657	(0.53,0.59]	chr22	1581682	22	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000335626.8:ENST00000404876.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr4	78180865	78180963	5481619	0	-	0.581633	(0.53,0.59]	chr4	439414	1	EXON_PSEUDO	EXON_PSEUDO	SERBP1P5	ENSG00000249565.2	ENST00000510079.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr5	176654894	176654957	6403552	0	+	0.539683	(0.53,0.59]	chr5	497608	1	CDS	CDS:EXON_MRNA:INTRON	TSPAN17	ENSG00000048140.18	ENST00000310032.12:ENST00000298564.14:ENST00000508164.6:ENST00000514705.5:ENST00000503030.1:ENST00000504168.5:ENST00000503045.5:ENST00000515708.5:ENST00000507471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr6	30923428	30923505	7113234	0	+	0.584416	(0.53,0.59]	chr6	545375	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XXbac-BPG118E17.11:VARS2	ENSG00000288473.1:ENSG00000137411.19	ENST00000477288.5:ENST00000321897.9:ENST00000672801.1:ENST00000625423.2:ENST00000676266.1:ENST00000541562.6:ENST00000469358.5:ENST00000476162.5:ENST00000477052.1:ENST00000473916.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr6	159767004	159767095	7526815	0	+	0.549451	(0.53,0.59]	chr6	574519	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000467951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr7	4764758	4764858	8109606	0	+	0.59	(0.53,0.59]	chr7	619657	24	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chrX	53233353	53233449	19075648	0	-	0.53125	(0.53,0.59]	chrX	1622370	6	UTR3	UTR3:EXON_MRNA:INTRON	IQSEC2	ENSG00000124313.18	ENST00000638869.1:ENST00000639796.1:ENST00000638521.1:ENST00000640005.1:ENST00000640694.1:ENST00000675719.1:ENST00000642864.1:ENST00000674510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.35511	2.984025	3.61294	0.0445399	0.0310038	0.172163	0.130016
chr16	92595	92660	15815371	0	-	0.584615	(0.53,0.59]	chr16	1259929	1	CDS	CDS:UTR3:EXON_MRNA	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.90978	2.983765	3.05775	0.00857883	6.94592e-4	0.0552386	0.00846751
chr1	151068179	151068276	469981	0	+	0.319588	(0.29,0.33]	chr1	47855	8	UTR3	UTR3:EXON_MRNA	MLLT11	ENSG00000213190.4	ENST00000368921.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.83531	2.983715	3.13212	0.00551048	0.00228447	0.0414592	0.0209856
chr12	93476953	93477017	13019333	0	+	0.328125	(0.29,0.33]	chr12	1013467	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	2.83531	2.983715	3.13212	0.00551048	0.00228447	0.0414592	0.0209856
chrX	103253264	103253354	19154913	0	-	0.322222	(0.29,0.33]	chrX	1629256	4	UTR3	UTR3:EXON_MRNA	TCEAL8	ENSG00000180964.17	ENST00000360000.8:ENST00000372685.8	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.83531	2.983715	3.13212	0.00551048	0.00228447	0.0414592	0.0209856
chr2	197499781	197499861	3106911	0	-	0.75	(0.59,1]	chr2	274688	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	164	2	2.66742	2.983705	3.29999	2.4798e-4	2.25179e-5	0.00406724	5.35995e-4
chr20	50081896	50081993	18004126	0	-	0.505155	(0.49,0.53]	chr20	1525944	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	134	2	2.65474	2.9837049999999996	3.31267	1.4833e-5	1.04204e-6	3.81691e-4	4.57544e-5
chr10	55599422	55599517	11057079	0	+	0.368421	(0.36,0.39]	chr10	841508	5	UTR5	UTR5:EXON_MRNA	MTRNR2L5	ENSG00000249860.4	ENST00000512524.4	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.94692	2.98367	4.02042	0.0192083	1.39717e-7	0.0943643	7.45332e-6
chr1	212100343	212100436	701686	0	+	0.516129	(0.49,0.53]	chr1	71173	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000489149.1:ENST00000463791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	2.5375	2.98352	3.42954	0.00105489	0.00104367	0.0123035	0.0115928
chr12	57530323	57530414	13356838	0	-	0.483516	(0.455,0.49]	chr12	1052762	4	UTR3	UTR3:EXON_MRNA	DCTN2	ENSG00000175203.17	ENST00000676646.1:ENST00000679307.1:ENST00000551142.2:ENST00000548249.6:ENST00000678505.1:ENST00000550988.6:ENST00000552390.6:ENST00000676956.1:ENST00000678521.1:ENST00000678322.1:ENST00000543672.6:ENST00000678653.1:ENST00000678247.1:ENST00000434715.7:ENST00000550201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	2.52734	2.9834750000000003	3.43961	0.00792433	8.42878e-5	0.0523592	0.0015859
chr12	32727204	32727295	13284223	0	-	0.384615	(0.36,0.39]	chr12	1041571	10	EXON_PSEUDO	EXON_PSEUDO	RP11-278C7.1	ENSG00000257511.1	ENST00000550917.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	22	2	1.54187	2.98345	4.42503	0.0425746	0.00133228	0.160556	0.0144372
chr19	29207647	29207732	17528316	0	-	0.470588	(0.455,0.49]	chr19	1471070	1	CDS	CDS:EXON_MRNA	UQCRFS1	ENSG00000169021.6	ENST00000304863.6	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.15064	2.98344	3.81624	0.00661084	1.48205e-4	0.046082	0.00269793
chr9	107306467	107306557	10410301	0	+	0.6	(0.59,1]	chr9	783995	2	CDS	CDS:EXON_MRNA	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	9	156	2	2.69604	2.983385	3.27073	6.7422e-4	1.15482e-5	0.00873562	3.09736e-4
chrX	148052574	148052660	18896965	0	+	0.430233	(0.42,0.455]	chrX	1609379	5	EXON_PSEUDO	EXON_PSEUDO	FTH1P8	ENSG00000219507.4	ENST00000498161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	55	2	2.42938	2.983225	3.53707	0.0045028	6.65925e-6	0.0349711	1.9719e-4
chr15	90919634	90919687	15103760	0	+	0.566038	(0.53,0.59]	chr15	1188780	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000360468.7:ENST00000557865.5:ENST00000561448.5:ENST00000557990.1:ENST00000558538.5:ENST00000560926.5:ENST00000559341.5:ENST00000558374.5:ENST00000559558.1:ENST00000559704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.35511	2.98322	3.61133	0.0445399	4.55298e-4	0.172163	0.00608573
chr11	66362611	66362703	12424264	0	-	0.576087	(0.53,0.59]	chr11	964610	2	UTR3	UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	36	2	2.77921	2.9831399999999997	3.18707	0.0132865	3.55681e-4	0.0740932	0.00539248
chr9	105705646	105705746	10400275	0	+	0.42	(0.39,0.42]	chr9	783662	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000434214.1:ENST00000374688.5:ENST00000435034.5	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	1.91489	2.9831	4.05131	0.0197788	1.11123e-7	0.0960939	6.12173e-6
chr7	103303940	103304040	8441039	0	+	0.34	(0.33,0.36]	chr7	645011	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.28792	2.9826050000000004	3.67729	0.0239159	1.89665e-5	0.112531	4.64808e-4
chr11	65427507	65427607	11984618	0	+	0.56	(0.53,0.59]	chr11	920390	35	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	12	112	2	2.23042	2.9822699999999998	3.73412	7.16524e-4	3.46202e-7	0.00859518	1.81234e-5
chr3	14487375	14487474	3320856	0	+	0.454545	(0.42,0.455]	chr3	292287	25	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.96788	2.9822699999999998	2.99666	0.00109784	0.00104775	0.0123035	0.0119666
chr12	113389207	113389304	13101746	0	+	0.649485	(0.59,1]	chr12	1022448	7	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.11894	2.982255	3.84557	0.0410704	0.0293157	0.163285	0.128478
chr17	21011229	21011309	16477906	0	-	0.6125	(0.59,1]	chr17	1346723	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1:ENST00000582335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	28	2	2.11894	2.982255	3.84557	0.0410704	0.0293157	0.163285	0.128478
chr1	155294571	155294661	1307581	0	-	0.644444	(0.59,1]	chr1	132213	2	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.77418	2.98209	3.19	0.0160729	0.0039188	0.0860154	0.0314356
chr21	45282348	45282438	18278571	0	-	0.633333	(0.59,1]	chr21	1550484	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	POFUT2	ENSG00000186866.17	ENST00000331343.11:ENST00000334538.13:ENST00000471540.5:ENST00000612472.4:ENST00000349485.10:ENST00000451615.1:ENST00000493524.5:ENST00000468360.5:ENST00000493811.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	41	2	2.77418	2.98209	3.19	0.0160729	0.0039188	0.0860154	0.0314356
chr19	582838	582931	17188340	0	+	0.376344	(0.36,0.39]	chr19	1410791	1	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	112	2	2.90163	2.982065	3.0625	9.79786e-6	1.90093e-6	2.98194e-4	6.88467e-5
chr1	25816584	25816680	107281	0	+	0.645833	(0.59,1]	chr1	12525	10	UTR3	UTR3:EXON_MRNA:INTRON	SELENON:RP1-317E23.6	ENSG00000162430.18:ENSG00000255054.3	ENST00000361547.7:ENST00000374315.1:ENST00000559265.1:ENST00000527604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	41	2	2.84748	2.9819750000000003	3.11647	0.0124539	0.00535979	0.0712518	0.0406564
chr2	157258665	157258762	2152110	0	+	0.484536	(0.455,0.49]	chr2	198573	6	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.15985	2.981725	3.8036	0.0128965	1.59194e-4	0.0722356	0.00263091
chr22	19172550	19172646	18294842	0	+	0.552083	(0.53,0.59]	chr22	1552668	13	EXON_LNCRNA	EXON_LNCRNA	LINC01311	ENSG00000260924.2	ENST00000565162.2	lncRNA	lncRNA	lncRNA	lncRNA	4	49	2	2.27113	2.9816849999999997	3.69224	0.0178853	1.78865e-5	0.0918323	4.45448e-4
chr1	38839455	38839552	951272	0	-	0.587629	(0.53,0.59]	chr1	100260	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RRAGC:RP5-864K19.7	ENSG00000116954.8:ENSG00000273637.1	ENST00000373001.4:ENST00000622355.1:ENST00000474456.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr1	153808292	153808391	1298790	0	-	0.565657	(0.53,0.59]	chr1	130472	37	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr10	79353662	79353752	11148685	0	+	0.566667	(0.53,0.59]	chr10	847446	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPIF	ENSG00000108179.14	ENST00000225174.8:ENST00000472580.6:ENST00000448165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr11	65128105	65128197	12421636	0	-	0.586957	(0.53,0.59]	chr11	963732	10	UTR3	UTR3:EXON_MRNA:INTRON	SYVN1	ENSG00000162298.19	ENST00000530451.1:ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr11	134367256	134367341	12223286	0	+	0.552941	(0.53,0.59]	chr11	942808	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLB1L2	ENSG00000149328.15	ENST00000339772.9:ENST00000535456.7:ENST00000529077.5:ENST00000533324.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr12	122093862	122093962	13122641	0	+	0.55	(0.53,0.59]	chr12	1024773	142	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr15	74448538	74448600	15374710	0	-	0.580645	(0.53,0.59]	chr15	1215219	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UBL7	ENSG00000138629.16	ENST00000361351.8:ENST00000395081.7:ENST00000565335.5:ENST00000567435.5:ENST00000566365.5:ENST00000565494.5:ENST00000564488.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr17	62424218	62424310	16308597	0	+	0.586957	(0.53,0.59]	chr17	1322745	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	METTL2A	ENSG00000087995.16	ENST00000333483.14:ENST00000616852.1:ENST00000311506.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr17	78997066	78997157	16698230	0	-	0.582418	(0.53,0.59]	chr17	1376287	2	CDS	CDS:EXON_MRNA	CANT1	ENSG00000171302.17	ENST00000392446.10:ENST00000302345.6:ENST00000620915.4:ENST00000592228.1:ENST00000591773.5:ENST00000588611.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr19	5205567	5205667	17434911	0	-	0.54	(0.53,0.59]	chr19	1455624	311	INTRON	INTRON	PTPRS	ENSG00000105426.17	ENST00000588552.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr19	39972461	39972555	17327638	0	+	0.542553	(0.53,0.59]	chr19	1435371	2	CDS	CDS:EXON_MRNA	PSMC4	ENSG00000013275.8	ENST00000157812.7:ENST00000455878.2:ENST00000593455.5:ENST00000601697.5:ENST00000596386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr19	41958735	41958831	17570751	0	-	0.5625	(0.53,0.59]	chr19	1477241	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RABAC1:CTD-2575K13.8	ENSG00000105404.11:ENSG00000285505.1	ENST00000601891.5:ENST00000600292.5:ENST00000222008.11:ENST00000601028.1:ENST00000601078.5:ENST00000644613.1:ENST00000596171.1:ENST00000601476.1:ENST00000599219.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr19	47229044	47229143	17596399	0	-	0.535354	(0.53,0.59]	chr19	1481601	2	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr2	25743204	25743302	2563647	0	-	0.571429	(0.53,0.59]	chr2	230353	12	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr22	50286229	50286287	18547105	0	-	0.586207	(0.53,0.59]	chr22	1584741	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PLXNB2	ENSG00000196576.16	ENST00000359337.9:ENST00000449103.5:ENST00000411680.1:ENST00000496720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr3	150742514	150742606	4518357	0	-	0.586957	(0.53,0.59]	chr3	375085	4	CDS	CDS:EXON_MRNA	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr6	30494001	30494097	7111249	0	+	0.53125	(0.53,0.59]	chr6	544771	14	UTR3	UTR3:EXON_MRNA	HLA-E	ENSG00000204592.9	ENST00000376630.5	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr7	72807162	72807259	8851455	0	-	0.546392	(0.53,0.59]	chr7	675348	2	CDS	CDS:EXON_MRNA:INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5:ENST00000610600.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr9	120764558	120764658	10833539	0	-	0.56	(0.53,0.59]	chr9	820414	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chrX	53193772	53193851	19075203	0	-	0.582278	(0.53,0.59]	chrX	1622229	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM5C	ENSG00000126012.12	ENST00000452825.7:ENST00000375401.8:ENST00000404049.7:ENST00000375379.7:ENST00000375383.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chrX	53201853	53201913	19075305	0	-	0.533333	(0.53,0.59]	chrX	1622280	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KDM5C	ENSG00000126012.12	ENST00000452825.7:ENST00000375401.8:ENST00000404049.7:ENST00000375379.7:ENST00000375383.7:ENST00000497100.5:ENST00000465402.1:ENST00000481369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chrX	71061015	71061115	19106540	0	-	0.58	(0.53,0.59]	chrX	1625281	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNX12	ENSG00000147164.12	ENST00000622259.4:ENST00000483560.1:ENST00000374274.8:ENST00000622277.4:ENST00000490561.6:ENST00000465030.1:ENST00000276105.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.34461	2.981585	3.61856	0.0457008	0.0303021	0.168044	0.129773
chr16	85675411	85675510	15798107	0	+	0.373737	(0.36,0.39]	chr16	1257094	30	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.37674	2.981555	3.58637	0.00529284	5.84377e-4	0.0390084	0.00793559
chr1	67413106	67413206	1079137	0	-	0.37	(0.36,0.39]	chr1	110137	54	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	13	81	2	2.30283	2.98154	3.66025	4.36378e-4	5.20204e-7	0.00624085	2.29038e-5
chr2	62147152	62147247	1844806	0	+	0.610526	(0.59,1]	chr2	175130	10	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	COMMD1:RPSAP26	ENSG00000173163.10:ENSG00000242735.1	ENST00000427417.1:ENST00000442699.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	4	65	2	2.38157	2.9814499999999997	3.58133	0.00534794	8.92036e-4	0.0392783	0.010856
chr17	1676642	1676711	16401561	0	-	0.57971	(0.53,0.59]	chr17	1334929	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000576407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	2.94231	2.9814249999999998	3.02054	0.00577011	3.05722e-4	0.0426551	0.00442973
chr2	113942272	113942359	2006965	0	+	0.356322	(0.33,0.36]	chr2	190783	2	CDS	CDS:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	2.78095	2.98134	3.18173	0.00388614	7.36023e-6	0.0322851	2.14578e-4
chr5	10361450	10361549	5874776	0	+	0.383838	(0.36,0.39]	chr5	461908	64	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	69	2	2.27411	2.98106	3.68801	0.00289952	4.12017e-7	0.0258199	1.87917e-5
chr11	108296095	108296194	12125907	0	+	0.242424	[0,0.29]	chr11	933673	2	EXON_MRNA	EXON_MRNA:INTRON	ATM	ENSG00000149311.20	ENST00000675843.1:ENST00000683174.1:ENST00000527805.6:ENST00000675595.1:ENST00000452508.6:ENST00000278616.9:ENST00000524792.5:ENST00000683524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.82443	2.9809799999999997	3.13753	0.0180803	0.00396668	0.0920398	0.0317467
chr14	68788251	68788350	14684713	0	-	0.232323	[0,0.29]	chr14	1149951	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFP36L1	ENSG00000185650.10	ENST00000555997.1:ENST00000439696.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.82443	2.9809799999999997	3.13753	0.0180803	0.00396668	0.0920398	0.0317467
chr19	49335467	49335540	17369669	0	+	0.575342	(0.53,0.59]	chr19	1442728	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	54	2	2.8006	2.9808500000000002	3.1611	0.00233666	8.49658e-5	0.0221314	0.00159594
chr20	5118609	5118677	17887822	0	-	0.352941	(0.33,0.36]	chr20	1514089	1	CDS	CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.78095	2.980685	3.18042	0.00388614	3.92606e-4	0.0322851	0.00539371
chr3	49362549	49362609	4174100	0	-	0.516667	(0.49,0.53]	chr3	350901	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	75	2	2.78773	2.980565	3.1734	0.00257389	3.31383e-6	0.0235767	1.09618e-4
chr19	975442	975541	17190438	0	+	0.383838	(0.36,0.39]	chr19	1411266	35	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.75914	2.9805599999999997	3.20198	8.69953e-4	4.4092e-4	0.0101157	0.0062930699999999996
chr1	223864569	223864663	1524788	0	-	0.553191	(0.53,0.59]	chr1	152347	10	EXON_PSEUDO	EXON_PSEUDO	ACTBP11	ENSG00000188460.4	ENST00000436287.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	77	2	2.39232	2.980475	3.56863	4.08341e-4	3.93456e-5	0.00600264	8.48445e-4
chr6	36924131	36924230	7135751	0	+	0.646465	(0.59,1]	chr6	549805	8	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	2.3791	2.9802150000000003	3.58133	0.00271535	8.92036e-4	0.0237499	0.010856
chr6	31640864	31640938	7661386	0	-	0.567568	(0.53,0.59]	chr6	584812	2	CDS	CDS:UTR3:EXON_MRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000422948.5:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	2.95367	2.9802049999999998	3.00674	8.9408e-4	3.88976e-5	0.01086	8.42006e-4
chr4	73091050	73091146	5466121	0	-	0.53125	(0.53,0.59]	chr4	437754	5	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	2.15403	2.9800649999999997	3.8061	0.0118065	8.37944e-6	0.0686664	2.38248e-4
chr5	126777212	126777311	6202241	0	+	0.50505	(0.49,0.53]	chr5	483161	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	2.53011	2.979825	3.42954	0.00254862	0.00105489	0.0227869	0.0123035
chr1	161454683	161454783	1333743	0	-	0.68	(0.59,1]	chr1	136938	138	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	2	30	2	2.24397	2.9798150000000003	3.71566	0.0487443	0.0206682	0.175495	0.0997234
chr10	18675413	18675512	10946919	0	+	0.313131	(0.29,0.33]	chr10	833591	3	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	2.62211	2.97974	3.33737	0.00310562	7.07571e-6	0.0274272	2.08408e-4
chr11	62851983	62852082	12411555	0	-	0.363636	(0.36,0.39]	chr11	961813	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	13	107	2	2.43116	2.979635	3.52811	0.00129293	3.11611e-8	0.0141517	2.06017e-6
chrX	23837031	23837127	19005198	0	-	0.458333	(0.455,0.49]	chrX	1617169	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	APOO:RPL9P7	ENSG00000184831.14:ENSG00000238103.4	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1:ENST00000330965.4	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	23	165	2	2.58268	2.97959	3.3765	8.8727e-6	1.2429e-7	2.49599e-4	7.5922e-6
chr7	105106521	105106604	8449809	0	+	0.373494	(0.36,0.39]	chr7	645326	1	CDS	CDS:EXON_MRNA:INTRON	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	38	2	1.65397	2.9795000000000003	4.30503	0.0219269	7.76959e-6	0.103959	2.43892e-4
chr6	30622831	30622898	7111702	0	+	0.492537	(0.49,0.53]	chr6	544920	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	46	2	2.38204	2.979365	3.57669	0.0049129	3.59064e-5	0.0366648	8.71318e-4
chr22	20065046	20065143	18297041	0	+	0.546392	(0.53,0.59]	chr22	1553104	5	UTR3	UTR3:EXON_MRNA	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000398042.6:ENST00000399807.7:ENST00000450019.5:ENST00000327374.9:ENST00000401833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	45	2	2.21316	2.9792899999999998	3.74542	0.00482336	2.30148e-4	0.0371856	0.00352524
chr6	31815542	31815613	7116657	0	+	0.577465	(0.53,0.59]	chr6	546202	1	UTR5	UTR5:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	7	72	2	2.79311	2.979265	3.16542	6.84253e-4	2.40175e-5	0.00836671	6.22273e-4
chr1	63490082	63490150	1071151	0	-	0.382353	(0.36,0.39]	chr1	109495	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5:ENST00000465781.5:ENST00000460251.5:ENST00000478138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	21	2	1.92623	2.979215	4.0322	0.0166541	0.00588589	0.0881353	0.0427941
chr16	53324601	53324698	15667639	0	+	0.381443	(0.36,0.39]	chr16	1245314	7	CDS	CDS:EXON_MRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000565803.2:ENST00000219084.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	1.92623	2.979215	4.0322	0.0166541	0.00588589	0.0881353	0.0427941
chr3	136151714	136151808	4469319	0	-	0.5	(0.49,0.53]	chr3	371336	6	CDS	CDS:EXON_MRNA	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.13501	2.979155	3.8233	0.0287874	1.44192e-4	0.128869	0.00242438
chr20	32850109	32850207	17755874	0	+	0.377551	(0.36,0.39]	chr20	1498956	15	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	11	80	2	2.40203	2.979135	3.55624	8.61476e-4	3.48749e-7	0.0105878	1.62533e-5
chr5	134197083	134197181	6844105	0	-	0.397959	(0.39,0.42]	chr5	523666	29	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	1.87119	2.9791049999999997	4.08702	0.0373134	3.01232e-5	0.152293	6.78876e-4
chr10	89762637	89762736	11181226	0	+	0.373737	(0.36,0.39]	chr10	850143	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF20B	ENSG00000138182.15	ENST00000371728.8:ENST00000260753.8:ENST00000478929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.62565	2.97903	3.33241	0.0219469	0.00193631	0.103959	0.0192272
chr1	11920223	11920314	861951	0	-	0.538462	(0.53,0.59]	chr1	87458	8	UTR3	UTR3:EXON_MRNA	KIAA2013	ENSG00000116685.16	ENST00000376572.8:ENST00000616327.1	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr1	21221746	21221842	887372	0	-	0.583333	(0.53,0.59]	chr1	91704	1	CDS	CDS:EXON_MRNA:INTRON	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000374893.11:ENST00000649812.1:ENST00000357071.8:ENST00000531334.1:ENST00000436918.6:ENST00000264205.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr11	64232521	64232614	11979612	0	+	0.580645	(0.53,0.59]	chr11	918857	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DNAJC4	ENSG00000110011.13	ENST00000321685.7:ENST00000628077.2:ENST00000355040.8:ENST00000536006.5:ENST00000321460.5:ENST00000537109.1:ENST00000543685.1:ENST00000542376.5:ENST00000543791.5:ENST00000535246.1:ENST00000538961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr12	53307650	53307713	13338784	0	-	0.571429	(0.53,0.59]	chr12	1049026	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr14	55766538	55766636	14301040	0	+	0.561224	(0.53,0.59]	chr14	1117939	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-813I20.2:RPL13AP3	ENSG00000258784.1:ENSG00000177350.6	ENST00000554458.1:ENST00000487479.1:ENST00000494676.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr2	26230191	26230242	2566045	0	-	0.54902	(0.53,0.59]	chr2	230609	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr9	37439550	37439647	10644796	0	-	0.556701	(0.53,0.59]	chr9	805686	16	UTR3	UTR3:EXON_MRNA	ZBTB5	ENSG00000168795.5	ENST00000307750.5	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.65894	2.9788449999999997	3.29875	0.0193255	0.00191422	0.0943643	0.018324
chr9	114425518	114425617	10809271	0	-	0.424242	(0.42,0.455]	chr9	819444	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WHRN	ENSG00000095397.16	ENST00000362057.4:ENST00000265134.10:ENST00000674048.1:ENST00000674036.8:ENST00000673811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	76	2	2.53312	2.9786849999999996	3.42425	2.86485e-4	3.5807e-6	0.00421942	1.29017e-4
chr15	69452880	69452948	15002360	0	+	0.720588	(0.59,1]	chr15	1179280	2	UTR5	UTR5:EXON_MRNA	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	171	2785	2	2.71201	2.978675	3.24534	2.18925e-6	2.10373e-8	8.53444e-5	1.47085e-6
chr6	44247086	44247140	7161542	0	+	0.62963	(0.59,1]	chr6	553821	1	UTR5	UTR5:EXON_MRNA:INTRON	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10	protein_coding	protein_coding	protein_coding	protein_coding	33	558	2	2.49018	2.9784550000000003	3.46673	6.69799e-5	5.04038e-8	0.0014254	3.10798e-6
chr1	109347482	109347532	1219821	0	-	0.46	(0.455,0.49]	chr1	119008	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.30139	2.97842	3.65545	0.0530131	3.50134e-4	0.195536	0.0049086
chr4	138182296	138182393	5665180	0	-	0.463918	(0.455,0.49]	chr4	450205	1	CDS	CDS:EXON_MRNA:INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.30139	2.97842	3.65545	0.0530131	3.50134e-4	0.195536	0.0049086
chr14	81479611	81479675	14732759	0	-	0.46875	(0.455,0.49]	chr14	1154147	1	CDS	CDS:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000554293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	2.69053	2.97838	3.26623	0.0182983	2.31662e-4	0.0925808	0.00354314
chr2	32464665	32464744	1713484	0	+	0.455696	(0.455,0.49]	chr2	168105	3	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.69053	2.97838	3.26623	0.0182983	2.31662e-4	0.0925808	0.00354314
chr16	22286268	22286367	15589657	0	+	0.30303	(0.29,0.33]	chr16	1235909	24	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.50081	2.9780749999999996	4.45534	0.0510523	0.00110984	0.182134	0.0127344
chr10	96559658	96559736	11640485	0	-	0.333333	(0.33,0.36]	chr10	886617	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.63456	2.978065	3.32157	0.00707461	1.77615e-4	0.0478528	0.00287736
chr2	28799303	28799401	1702891	0	+	0.346939	(0.33,0.36]	chr2	167042	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.63456	2.978065	3.32157	0.00707461	1.77615e-4	0.0478528	0.00287736
chr7	135929430	135929529	9085575	0	-	0.474747	(0.455,0.49]	chr7	693646	28	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	13	88	2	2.35859	2.97805	3.59751	1.6721e-4	4.2755e-6	0.00272473	1.49387e-4
chr5	141574028	141574118	6875642	0	-	0.566667	(0.53,0.59]	chr5	526443	7	CDS	CDS:UTR3:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5:ENST00000647330.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	61	2	2.94928	2.9780100000000003	3.00674	8.9408e-4	9.80612e-5	0.01086	0.00177549
chr5	10402092	10402139	5875197	0	+	0.297872	(0.29,0.33]	chr5	461971	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000514961.1:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	42	2	1.96139	2.97796	3.99453	0.00262332	8.03892e-5	0.023151	0.00167226
chr3	33498431	33498530	4113288	0	-	0.323232	(0.29,0.33]	chr3	343701	23	UTR3	UTR3:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000464961.1:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000487553.5:ENST00000635664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	54	2	2.87459	2.977945	3.0813	1.72733e-4	1.31962e-5	0.00280648	3.79554e-4
chr1	15939327	15939427	71936	0	+	0.57	(0.53,0.59]	chr1	8125	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SPEN	ENSG00000065526.12	ENST00000375759.8:ENST00000487496.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.72478	2.977815	3.2308500000000002	0.00324675	2.81517e-4	0.0282494	0.00415519
chr1	20660935	20660991	882343	0	-	0.553571	(0.53,0.59]	chr1	91152	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1:ENST00000477229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	44	2	2.72478	2.977815	3.2308500000000002	0.00324675	2.81517e-4	0.0282494	0.00415519
chr11	18514759	18514841	12302884	0	-	0.378049	(0.36,0.39]	chr11	951516	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000543054.5:ENST00000543087.5:ENST00000544804.5:ENST00000438874.6:ENST00000542488.5:ENST00000535077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	2.93136	2.977665	3.02397	0.00811967	0.00674398	0.0528637	0.0461258
chr12	76386167	76386266	13424654	0	-	0.373737	(0.36,0.39]	chr12	1056762	1	CDS	CDS:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000546946.5:ENST00000548535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.93136	2.977665	3.02397	0.00811967	0.00674398	0.0528637	0.0461258
chrX	48448271	48448365	19062719	0	-	0.382979	(0.36,0.39]	chrX	1620367	10	EXON_PSEUDO	EXON_PSEUDO	AF196972.4	ENSG00000226971.1	ENST00000457562.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	18	2	2.93136	2.977665	3.02397	0.00811967	0.00674398	0.0528637	0.0461258
chr12	24817807	24817907	13255734	0	-	0.33	(0.29,0.33]	chr12	1038842	79	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000543099.1:ENST00000539780.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	2.34203	2.97763	3.61323	0.010113	3.91773e-6	0.0626311	1.26663e-4
chr1	112670230	112670329	411474	0	+	0.393939	(0.39,0.42]	chr1	40540	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	84	2	2.74788	2.9776249999999997	3.20737	2.37066e-5	2.01212e-5	5.60048e-4	5.37852e-4
chr18	12720596	12720683	16763522	0	+	0.436782	(0.42,0.455]	chr18	1382684	2	CDS	CDS:EXON_MRNA:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	40	2	2.34191	2.97757	3.61323	0.0159091	2.83914e-5	0.0854674	6.46853e-4
chr13	20781723	20781823	13923352	0	-	0.43	(0.42,0.455]	chr13	1092233	45	UTR3	UTR3:EXON_MRNA	XPO4	ENSG00000132953.17	ENST00000255305.10	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.86513	2.977465	4.0898	0.0357107	0.00698074	0.147298	0.0473262
chr21	42844077	42844176	18270796	0	-	0.444444	(0.42,0.455]	chr21	1549336	4	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.86513	2.977465	4.0898	0.0357107	0.00698074	0.147298	0.0473262
chr3	184183516	184183616	3948254	0	+	0.49	(0.455,0.49]	chr3	332047	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000411763.6:ENST00000439647.5:ENST00000621863.4:ENST00000461733.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	2.76616	2.97734	3.18852	1.29557e-4	7.41674e-5	0.00223885	0.00156055
chr11	78079644	78079744	12477645	0	-	0.67	(0.59,1]	chr11	970666	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1:ENST00000528164.1	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	2.59234	2.977285	3.36223	0.00203572	0.00110395	0.0192213	0.0127339
chr9	121181296	121181395	10835888	0	-	0.454545	(0.42,0.455]	chr9	820919	33	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.4279	2.977245	3.52659	9.43793e-4	6.87022e-4	0.0106637	0.00876781
chr1	111712529	111712628	409145	0	+	0.323232	(0.29,0.33]	chr1	40282	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAP1A	ENSG00000116473.14	ENST00000356415.5:ENST00000369709.3:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	35	2	2.63796	2.97705	3.31614	6.9438e-4	3.2999e-4	0.00846751	0.00504024
chr11	34099858	34099956	11905493	0	+	0.469388	(0.455,0.49]	chr11	909587	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	133	2	2.37322	2.97696	3.5807	1.55622e-4	4.4388e-8	0.00281649	2.77679e-6
chr10	5765222	5765319	11352447	0	-	0.381443	(0.36,0.39]	chr10	865733	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.76749	2.9769550000000002	3.18642	0.00359152	0.00287858	0.0302391	0.0247002
chr2	10129676	10129773	1629051	0	+	0.381443	(0.36,0.39]	chr2	161739	4	UTR3	UTR3:EXON_MRNA:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.76749	2.9769550000000002	3.18642	0.00359152	0.00287858	0.0302391	0.0247002
chr5	111106056	111106143	6144488	0	+	0.367816	(0.36,0.39]	chr5	480193	1	CDS	CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000505303.5:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.76749	2.9769550000000002	3.18642	0.00359152	0.00287858	0.0302391	0.0247002
chr2	171983435	171983519	2208727	0	+	0.22619	[0,0.29]	chr2	202170	2	UTR3	UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.16074	2.976925	3.79311	0.0222978	1.75012e-4	0.105845	0.00283967
chr1	229324349	229324448	1541553	0	-	0.383838	(0.36,0.39]	chr1	154303	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	81	2	2.49406	2.97648	3.4589	9.87237e-5	3.57851e-5	0.00194682	7.83481e-4
chr10	30339425	30339525	11436318	0	-	0.41	(0.39,0.42]	chr10	871981	20	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.95786	2.976465	2.99507	0.00637824	0.00138212	0.0449937	0.0149186
chr17	29102511	29102609	16489986	0	-	0.397959	(0.39,0.42]	chr17	1348716	24	INTRON	INTRON	MYO18A	ENSG00000196535.17	ENST00000527372.7:ENST00000531253.5:ENST00000628822.2:ENST00000533112.5:ENST00000530254.6:ENST00000532143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.95786	2.976465	2.99507	0.00637824	0.00138212	0.0449937	0.0149186
chr17	28583510	28583579	16486040	0	-	0.463768	(0.455,0.49]	chr17	1347809	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000577259.1:ENST00000378976.5:ENST00000578230.5:ENST00000580083.6:ENST00000531839.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	1.75044	2.976165	4.20189	0.0463133	0.00397662	0.170072	0.0322851
chr2	215332381	215332444	2377104	0	+	0.47619	(0.455,0.49]	chr2	213532	1	CDS	CDS:UTR3:EXON_MRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.75044	2.976165	4.20189	0.0463133	0.00397662	0.170072	0.0322851
chr20	35044642	35044712	17950786	0	-	0.457143	(0.455,0.49]	chr20	1520495	3	CDS	CDS:EXON_MRNA	TRPC4AP	ENSG00000100991.12	ENST00000451813.6:ENST00000252015.3	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.75044	2.976165	4.20189	0.0463133	0.00397662	0.170072	0.0322851
chr19	15834994	15835089	17246586	0	+	0.494737	(0.49,0.53]	chr19	1422765	3	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	9	84	2	2.51367	2.976135	3.4386	0.00120983	9.97799e-7	0.0135286	3.98163e-5
chr1	32102430	32102501	126365	0	+	0.521127	(0.49,0.53]	chr1	15550	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000336294.10:ENST00000441402.5:ENST00000468135.5:ENST00000476968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.8671	2.975985	3.08487	0.0100489	6.09273e-4	0.0623334	0.00760626
chr17	21002146	21002244	16477807	0	-	0.653061	(0.59,1]	chr17	1346694	27	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	1.96416	2.975835	3.98751	0.044741	0.0301044	0.166115	0.129773
chr16	70541668	70541751	15729846	0	+	0.39759	(0.39,0.42]	chr16	1252929	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.27012	2.97583	3.68154	0.00945558	3.05414e-4	0.0594007	0.00442973
chr1	161158492	161158583	498764	0	+	0.461538	(0.455,0.49]	chr1	53854	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UFC1	ENSG00000143222.12	ENST00000368003.6:ENST00000483191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	52	2	2.61558	2.975765	3.33595	0.00184897	2.70224e-5	0.0185736	6.22285e-4
chr1	153667595	153667657	1298466	0	-	0.419355	(0.39,0.42]	chr1	130411	1	CDS	CDS:EXON_MRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000368684.8:ENST00000368681.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.85416	2.97576	3.09736	0.00225069	5.79886e-4	0.021386	0.00734771
chr2	10812696	10812767	2511026	0	-	0.802817	(0.59,1]	chr2	226738	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2:ENST00000489662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	72	2	2.85681	2.9756799999999997	3.09455	0.00235278	7.92671e-4	0.0222204	0.00933379
chr2	241353034	241353133	2467903	0	+	0.40404	(0.39,0.42]	chr2	223257	12	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.62131	2.975555	3.3298	0.00609677	0.00165391	0.0439136	0.0163614
chr17	22523876	22523968	16169256	0	+	0.391304	(0.39,0.42]	chr17	1304367	6	UTR5	UTR5:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.01081	2.975385	3.93996	0.0207537	0.00841622	0.100574	0.054565
chr7	108573253	108573353	8457663	0	+	0.42	(0.39,0.42]	chr7	646359	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DNAJB9	ENSG00000128590.5	ENST00000249356.4:ENST00000465725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.01081	2.975385	3.93996	0.0207537	0.00841622	0.100574	0.054565
chr5	72219684	72219778	6631308	0	-	0.382979	(0.36,0.39]	chr5	512531	4	UTR3	UTR3:EXON_MRNA	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000515226.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	29	2	2.6181	2.9752549999999998	3.33241	0.00193631	0.00176908	0.0192272	0.0172426
chr1	39034396	39034496	145858	0	+	0.57	(0.53,0.59]	chr1	18093	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	22	205	2	2.90455	2.975245	3.04594	2.33737e-6	7.42034e-7	8.99269e-5	3.09705e-5
chr4	75644633	75644732	5472859	0	-	0.444444	(0.42,0.455]	chr4	438361	29	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	117	2	2.89895	2.97523	3.05151	2.68742e-5	1.36012e-6	6.86726e-4	5.18151e-5
chr2	200823269	200823368	2309400	0	+	0.343434	(0.33,0.36]	chr2	208970	12	UTR3	UTR3:EXON_MRNA	BZW1	ENSG00000082153.18	ENST00000409600.6	protein_coding	protein_coding	protein_coding	protein_coding	8	50	2	2.50997	2.9750199999999998	3.44007	9.74806e-4	1.36013e-5	0.0116117	3.54469e-4
chr11	9589293	9589392	11793804	0	+	0.353535	(0.33,0.36]	chr11	903118	8	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	48	2	2.22098	2.97494	3.7289	0.00172428	1.33223e-5	0.0178074	3.48915e-4
chr2	241352041	241352140	2467893	0	+	0.292929	(0.29,0.33]	chr2	223257	2	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000401990.5:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000421717.1:ENST00000451310.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.61288	2.97473	3.33658	0.00138819	1.69227e-4	0.0149724	0.00275464
chr2	46903565	46903665	2629818	0	-	0.45	(0.42,0.455]	chr2	236786	18	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.32629	2.97472	3.62315	0.0153564	4.234e-4	0.0832114	0.00613535
chr12	103933955	103934023	13056768	0	+	0.485294	(0.455,0.49]	chr12	1017311	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	333	2	2.49237	2.974505	3.45664	6.77769e-5	3.20388e-10	0.00143987	3.83194e-8
chr2	59603627	59603727	2678696	0	-	0.52	(0.49,0.53]	chr2	239543	27	INTRON	INTRON	RP11-444A22.1:AC007131.2	ENSG00000271955.2:ENSG00000233891.8	ENST00000606382.1:ENST00000412409.3	lncRNA	lncRNA	lncRNA	lncRNA	14	122	2	2.67377	2.9744	3.27503	1.19004e-4	3.5821e-7	0.00226134	1.65879e-5
chr18	46089565	46089648	17103858	0	-	0.518072	(0.49,0.53]	chr18	1404370	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000589611.1:ENST00000590406.5:ENST00000590324.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	2.61777	2.97438	3.33099	0.00172617	1.59567e-4	0.0178146	0.00263091
chr17	42513919	42513978	16228742	0	+	0.644068	(0.59,1]	chr17	1312994	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	ATP6V0A1:MIR5010	ENSG00000033627.17:ENSG00000283929.1	ENST00000393829.6:ENST00000343619.9:ENST00000537728.5:ENST00000264649.10:ENST00000585525.5:ENST00000544137.5:ENST00000587510.5:ENST00000586201.5:ENST00000588138.1:ENST00000585828.5:ENST00000588806.1:ENST00000582846.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	55	2	2.32384	2.97433	3.62482	0.0157639	7.40647e-4	0.0851539	0.00925967
chr1	10419416	10419477	39910	0	+	0.639344	(0.59,1]	chr1	4835	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000498356.1:ENST00000496718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	166	2	2.37858	2.9741999999999997	3.56982	0.00108351	4.18574e-6	0.0125084	1.33669e-4
chr17	45102950	45103035	16237738	0	+	0.517647	(0.49,0.53]	chr17	1315018	1	CDS	CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000590114.6:ENST00000592654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.56183	2.97415	3.38647	0.0261296	1.15525e-4	0.118976	0.00204405
chr10	46012954	46013026	11471000	0	-	0.5	(0.49,0.53]	chr10	874849	2	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	9	79	2	2.87508	2.97404	3.073	4.55699e-4	7.16923e-6	0.00645757	2.107e-4
chr9	73163475	73163532	10304720	0	+	0.508772	(0.49,0.53]	chr9	776040	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	61	2	2.95928	2.9738100000000003	2.98834	2.39968e-4	9.07604e-5	0.00394917	0.00167715
chr1	179862896	179862995	1394822	0	-	0.50505	(0.49,0.53]	chr1	141314	40	UTR3	UTR3:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.49797	2.9737400000000003	3.44951	0.0405223	0.00843736	0.153343	0.0546021
chr10	73771288	73771385	11115883	0	+	0.43299	(0.42,0.455]	chr10	845933	3	UTR3	UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	44	2	1.91899	2.973355	4.02772	0.00718351	4.30844e-5	0.0482184	0.00100091
chr6	49605561	49605658	7729595	0	-	0.381443	(0.36,0.39]	chr6	592928	5	UTR3	UTR3:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1	protein_coding	protein_coding	protein_coding	protein_coding	16	91	2	2.24673	2.97328	3.69983	2.07582e-4	4.47136e-7	0.0032552	2.24237e-5
chr19	2038225	2038324	17421451	0	-	0.424242	(0.42,0.455]	chr19	1453118	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5:ENST00000588014.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	2.90616	2.973095	3.04003	0.00162359	7.68268e-4	0.0169915	0.00916171
chr12	885222	885318	12681422	0	+	0.5	(0.49,0.53]	chr12	984118	7	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	2.84493	2.973015	3.1011	5.69237e-4	5.26587e-4	0.00778538	0.00679103
chr12	53467804	53467843	12886617	0	+	0.512821	(0.49,0.53]	chr12	1002461	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	132	2	2.53898	2.973	3.40702	1.64482e-4	1.1192e-7	0.0029267300000000002	6.16268e-6
chr1	150966147	150966247	1291366	0	-	0.59	(0.53,0.59]	chr1	128671	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	74	2	2.82257	2.972985	3.1234	0.00390623	2.50989e-5	0.0322851	5.82876e-4
chr1	6524285	6524383	845024	0	-	0.459184	(0.455,0.49]	chr1	85306	31	UTR3	UTR3:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.74211	2.9727949999999996	3.20348	0.00330545	3.27782e-4	0.028478	0.0046686
chr9	92080015	92080088	10736130	0	-	0.479452	(0.455,0.49]	chr9	812147	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5:ENST00000337841.4:ENST00000477888.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	2.74211	2.9727949999999996	3.20348	0.00330545	3.27782e-4	0.028478	0.0046686
chr17	67086912	67086996	16650801	0	-	0.47619	(0.455,0.49]	chr17	1369337	2	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.58479	2.972645	3.3605	0.00200187	0.00147278	0.0189555	0.0157578
chr17	42201146	42201244	16546630	0	-	0.469388	(0.455,0.49]	chr17	1357142	21	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	2.45014	2.9721900000000003	3.49424	0.00397453	9.02087e-6	0.0322851	2.53429e-4
chr16	28731828	28731919	15619301	0	+	0.604396	(0.59,1]	chr16	1238317	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	41	2	2.76802	2.9720899999999997	3.17616	0.0158525	0.00434232	0.0854671	0.0339139
chr17	1682128	1682210	16401636	0	-	0.512195	(0.49,0.53]	chr17	1334977	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.42431	2.97206	3.51981	0.0018555	6.88328e-4	0.0178545	0.00876781
chr1	1373800	1373900	827466	0	-	0.6	(0.59,1]	chr1	82381	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	AURKAIP1	ENSG00000175756.13	ENST00000338338.9:ENST00000338370.7:ENST00000321751.9:ENST00000378853.3	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.09833	2.9719499999999996	3.84557	0.0410704	0.0150311	0.163285	0.0816517
chr10	73779871	73779966	11115976	0	+	0.431579	(0.42,0.455]	chr10	845952	12	EXON_LNCRNA	EXON_LNCRNA	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	2	22	2	2.57051	2.9718999999999998	3.37329	0.0265466	0.00136107	0.120071	0.0141115
chr10	121133265	121133354	11721265	0	-	0.449438	(0.42,0.455]	chr10	894309	3	EXON_PSEUDO	EXON_PSEUDO	RPL19P16	ENSG00000236762.1	ENST00000433839.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	22	2	2.57051	2.9718999999999998	3.37329	0.0265466	0.00136107	0.120071	0.0141115
chr6	159776149	159776210	7526910	0	+	0.42623	(0.42,0.455]	chr6	574533	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000472052.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.57051	2.9718999999999998	3.37329	0.0265466	0.00136107	0.120071	0.0141115
chr9	104138091	104138165	10395361	0	+	0.432432	(0.42,0.455]	chr9	783176	2	CDS	CDS:UTR3:EXON_MRNA	SMC2	ENSG00000136824.19	ENST00000286398.11:ENST00000374793.8:ENST00000374787.7:ENST00000493955.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.57051	2.9718999999999998	3.37329	0.0265466	0.00136107	0.120071	0.0141115
chr11	123062063	123062159	12637022	0	-	0.583333	(0.53,0.59]	chr11	980742	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000527387.5:ENST00000531063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	183	2	2.75405	2.9718799999999996	3.18971	5.64047e-6	8.73906e-7	1.87384e-4	3.56263e-5
chr5	32601084	32601183	5925232	0	+	0.292929	(0.29,0.33]	chr5	464197	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000504789.5:ENST00000504016.1:ENST00000511175.1:ENST00000502453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	32	2	2.94844	2.97185	2.99526	0.00217122	2.55279e-4	0.0208941	0.00383691
chr2	27237378	27237461	1691714	0	+	0.566265	(0.53,0.59]	chr2	165754	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000458503.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.64475	2.97175	3.29875	0.00453071	0.00191422	0.0351187	0.018324
chr2	63605336	63605393	1850124	0	+	0.54386	(0.53,0.59]	chr2	175432	2	CDS	CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.64475	2.97175	3.29875	0.00453071	0.00191422	0.0351187	0.018324
chr7	159018536	159018634	8639478	0	+	0.540816	(0.53,0.59]	chr7	660126	5	INTRON	INTRON	LINC00689	ENSG00000231419.6	ENST00000447563.5:ENST00000438049.5:ENST00000413238.1	lncRNA	lncRNA	lncRNA	lncRNA	3	33	2	2.64475	2.97175	3.29875	0.00453071	0.00191422	0.0351187	0.018324
chr1	28538305	28538404	117425	0	+	0.535354	(0.53,0.59]	chr1	14376	4	UTR3	UTR3:EXON_MRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000683442.1:ENST00000373833.10:ENST00000373832.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.56002	2.9717450000000003	3.38347	0.00634904	0.00132446	0.0446708	0.0138834
chr17	81868284	81868378	16709695	0	-	0.585106	(0.53,0.59]	chr17	1377731	7	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGDIA	ENSG00000141522.12	ENST00000269321.12:ENST00000582520.1:ENST00000400721.8:ENST00000584461.5:ENST00000541078.6:ENST00000580685.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.56002	2.9717450000000003	3.38347	0.00634904	0.00132446	0.0446708	0.0138834
chr7	127362968	127363067	9057409	0	-	0.40404	(0.39,0.42]	chr7	691089	33	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:AC000123.2	ENSG00000048405.10:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	3	25	2	2.49426	2.9717450000000003	3.44923	0.0085468	0.00105208	0.0551026	0.0123035
chr8	26362709	26362809	9238265	0	+	0.41	(0.39,0.42]	chr8	707523	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000524169.5:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000518215.5:ENST00000665751.1:ENST00000518890.5:ENST00000517754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.49426	2.9717450000000003	3.44923	0.0085468	0.00105208	0.0551026	0.0123035
chr17	1345147	1345244	16398377	0	-	0.443299	(0.42,0.455]	chr17	1334230	10	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	85	2	2.51988	2.971565	3.42325	0.00300574	4.26148e-7	0.0267032	1.93035e-5
chr20	32215268	32215359	17752730	0	+	0.538462	(0.53,0.59]	chr20	1498556	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000375730.3:ENST00000486717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.63316	2.971295	3.30943	0.00474401	0.0018255	0.0361423	0.0183913
chr1	28742910	28743008	118411	0	+	0.489796	(0.455,0.49]	chr1	14542	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.63872	2.97128	3.30384	0.00510378	0.00184955	0.0390492	0.0178046
chr1	1045732	1045804	2318	0	+	0.638889	(0.59,1]	chr1	511	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000479707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	43	2	2.42639	2.971235	3.51608	0.0409084	0.00108676	0.163285	0.0118659
chr12	110720947	110721040	13539225	0	-	0.408602	(0.39,0.42]	chr12	1065103	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	138	2	2.1601	2.971145	3.78219	4.14171e-4	6.33332e-9	0.00607167	5.20637e-7
chr4	82818696	82818790	5496417	0	-	0.319149	(0.29,0.33]	chr4	440157	3	UTR3	UTR3:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5	protein_coding	protein_coding	protein_coding	protein_coding	18	122	2	2.47026	2.9711350000000003	3.47201	4.99675e-4	8.29462e-9	0.00700179	6.60393e-7
chr4	105485388	105485487	5026465	0	+	0.50505	(0.49,0.53]	chr4	409127	8	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	32	2	1.99044	2.97102	3.9516	0.0435903	6.96459e-5	0.170594	0.0013446
chr13	40932298	40932392	13987979	0	-	0.361702	(0.36,0.39]	chr13	1097099	5	UTR3	UTR3:EXON_MRNA	ELF1	ENSG00000120690.16	ENST00000239882.7:ENST00000498824.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	44	2	2.70174	2.9709950000000003	3.24025	2.74161e-4	2.69589e-4	0.00434657	0.00406677
chr12	24849867	24849949	13256062	0	-	0.47561	(0.455,0.49]	chr12	1038880	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	21	2	2.85172	2.970665	3.08961	0.010864	0.00445157	0.0643837	0.0340751
chr5	150690886	150690982	6914588	0	-	0.479167	(0.455,0.49]	chr5	529220	2	UTR3	UTR3:EXON_MRNA	RBM22	ENSG00000086589.12	ENST00000199814.9:ENST00000520132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.85172	2.970665	3.08961	0.010864	0.00445157	0.0643837	0.0340751
chr17	38918778	38918877	16218412	0	+	0.555556	(0.53,0.59]	chr17	1310821	1	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	81	2	2.19838	2.9706349999999997	3.74289	8.59983e-4	1.27332e-5	0.0100335	3.68625e-4
chr14	69885962	69886051	14688049	0	-	0.505618	(0.49,0.53]	chr14	1150336	8	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	51	2	2.64246	2.9703549999999996	3.29825	5.94013e-4	0.00019429700000000001	0.00745979	0.00332542
chr19	1257665	1257764	17192154	0	+	0.515152	(0.49,0.53]	chr19	1411881	5	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1:ENST00000591446.6	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	2.64246	2.9703549999999996	3.29825	5.94013e-4	0.00019429700000000001	0.00745979	0.00332542
chr5	43291130	43291220	6560169	0	-	0.477778	(0.455,0.49]	chr5	508333	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	11	69	2	1.9997	2.970155	3.94061	0.00204556	2.93826e-6	0.0200734	9.91141e-5
chr21	29326153	29326248	18089874	0	+	0.378947	(0.36,0.39]	chr21	1533699	2	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.84089	2.970045	3.0992	0.0128123	5.86576e-4	0.0719798	0.00742331
chr11	5342962	5343054	12241523	0	-	0.434783	(0.42,0.455]	chr11	946162	4	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	15	126	2	2.07335	2.969955	3.86656	0.0014031	7.81804e-9	0.015127699999999999	6.27317e-7
chr11	47628952	47629046	12388053	0	-	0.521277	(0.49,0.53]	chr11	957126	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MTCH2	ENSG00000109919.10	ENST00000539759.5:ENST00000302503.8:ENST00000534074.5:ENST00000525649.5:ENST00000530428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.78773	2.9699	3.15207	0.00347189	0.00257389	0.0286293	0.0235767
chr6	122471737	122471807	7924008	0	-	0.5	(0.49,0.53]	chr6	606853	1	UTR5	UTR5:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.78773	2.9699	3.15207	0.00347189	0.00257389	0.0286293	0.0235767
chr1	20661250	20661325	882348	0	-	0.653333	(0.59,1]	chr1	91157	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DDOST	ENSG00000244038.11	ENST00000415136.6:ENST00000602624.7:ENST00000464364.1:ENST00000477229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	98	2	2.59364	2.96988	3.34612	0.0010223	2.60979e-4	0.0113689	0.0042461
chr11	47469017	47469116	12386798	0	-	0.454545	(0.42,0.455]	chr11	956932	32	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	9	69	2	2.26652	2.96974	3.67296	0.00146622	2.43592e-6	0.0157384	8.48998e-5
chr22	36489132	36489229	18499399	0	-	0.525773	(0.49,0.53]	chr22	1578355	21	UTR3	UTR3:EXON_MRNA	FOXRED2	ENSG00000100350.15	ENST00000397224.9:ENST00000216187.10:ENST00000366463.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.49797	2.969735	3.4415	0.00843736	9.98297e-4	0.0546021	0.0111246
chr16	152820	152909	15480559	0	+	0.651685	(0.59,1]	chr16	1224140	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HBZ	ENSG00000130656.6	ENST00000652335.1:ENST00000252951.3	protein_coding	protein_coding	protein_coding	protein_coding	29	459	2	2.58855	2.9697	3.35085	2.62653e-5	4.47495e-7	6.07376e-4	2.24363e-5
chr2	135661331	135661393	2082312	0	+	0.483871	(0.455,0.49]	chr2	195346	2	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	1.87851	2.96967	4.06083	0.0092042	3.56832e-5	0.0583232	7.81595e-4
chr2	99188176	99188257	1952218	0	+	0.37037	(0.36,0.39]	chr2	185442	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-111H13.1:RP11-38C17.1:MRPL30	ENSG00000241962.9:ENSG00000273155.1:ENSG00000185414.20	ENST00000424491.5:ENST00000410042.1:ENST00000473743.5:ENST00000338148.8:ENST00000409145.5:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	2.76778	2.969615	3.17145	0.00365703	3.99865e-4	0.0307238	0.0054764
chr1	45014507	45014576	174346	0	+	0.623188	(0.59,1]	chr1	22550	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000462688.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	54	2	2.63214	2.9696100000000003	3.30708	0.005622	0.00252451	0.0421873	0.0226777
chr1	27973679	27973778	911265	0	-	0.515152	(0.49,0.53]	chr1	95292	35	UTR3	UTR3:EXON_MRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.81659	2.96961	4.12263	0.0376859	0.00591451	0.147713	0.0427941
chr2	113934278	113934332	2006881	0	+	0.518519	(0.49,0.53]	chr2	190770	1	CDS	CDS:UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	1.81659	2.96961	4.12263	0.0376859	0.00591451	0.147713	0.0427941
chr5	175527316	175527413	6397797	0	+	0.412371	(0.39,0.42]	chr5	496826	7	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	1.99911	2.96943	3.93975	0.0477207	0.0105893	0.17993	0.0644466
chr6	90519257	90519319	7843542	0	-	0.419355	(0.39,0.42]	chr6	601006	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	1.99911	2.96943	3.93975	0.0477207	0.0105893	0.17993	0.0644466
chr17	7574581	7574678	16105640	0	+	0.536082	(0.53,0.59]	chr17	1296947	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000584054.5:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000580461.5:ENST00000580886.5:ENST00000579139.1:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000582213.5:ENST00000579085.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581770.5:ENST00000577738.5:ENST00000581384.5:ENST00000577929.1:ENST00000578324.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	8	81	2	2.62309	2.9694149999999997	3.31574	0.00065129300000000005	8.44613e-6	0.00805846	2.61863e-4
chr12	54286952	54287051	12891501	0	+	0.434343	(0.42,0.455]	chr12	1002949	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000340913.11:ENST00000547566.5:ENST00000677220.1:ENST00000677778.1:ENST00000677840.1:ENST00000677666.1:ENST00000677061.1:ENST00000677072.1:ENST00000676661.1:ENST00000551665.1:ENST00000551803.1:ENST00000678103.1:ENST00000678900.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	23	2	1.87908	2.96931	4.05954	0.0189336	0.00617886	0.0958835	0.0439741
chrX	151409070	151409168	18909831	0	+	0.408163	(0.39,0.42]	chrX	1610139	42	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.79377	2.9692700000000003	4.14477	0.0299302	2.09513e-5	0.129773	5.04211e-4
chr17	46721581	46721678	16569011	0	-	0.371134	(0.36,0.39]	chr17	1360930	1	EXON_PSEUDO	EXON_PSEUDO	RPS7P11	ENSG00000213326.4	ENST00000484240.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	42	2	2.75147	2.9689449999999997	3.18642	0.00359152	1.45783e-4	0.0302391	0.00244642
chr1	21875952	21876042	891226	0	-	0.666667	(0.59,1]	chr1	92519	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	2.85681	2.96892	3.08103	0.00235278	2.20237e-4	0.0222204	0.0034006
chr1	1045358	1045440	2313	0	+	0.682927	(0.59,1]	chr1	507	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000479707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.03921	2.9688100000000004	3.89841	0.0371471	1.91539e-4	0.151849	0.00304814
chr1	23696343	23696373	98677	0	+	0.4	(0.39,0.42]	chr1	11432	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	125	2	2.68481	2.968805	3.2528	1.31647e-4	1.3717e-7	0.00245164	7.34618e-6
chr18	211480	211579	16716207	0	+	0.30303	(0.29,0.33]	chr18	1379161	3	UTR3	UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000261601.8:ENST00000578942.5:ENST00000383589.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	35	2	2.78823	2.968775	3.14932	8.11145e-4	1.84463e-4	0.00952488	0.00321185
chr1	180884854	180884953	586614	0	+	0.363636	(0.36,0.39]	chr1	60742	9	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	15	95	2	2.72044	2.968715	3.21699	1.83486e-5	2.80064e-6	4.53637e-4	1.05124e-4
chr2	74893165	74893262	1893451	0	+	0.43299	(0.42,0.455]	chr2	179646	24	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.47379	2.96864	3.46349	0.00996858	9.0025e-4	0.0621728	0.0102618
chr19	5903611	5903708	17437987	0	-	0.57732000000000006	(0.53,0.59]	chr19	1456287	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AC024592.12:NDUFA11	ENSG00000267740.5:ENSG00000174886.14	ENST00000592091.5:ENST00000586349.5:ENST00000585661.1:ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1:ENST00000591160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	51	2	2.50447	2.968535	3.4326	0.0301162	1.4648e-5	0.130016	4.12508e-4
chr5	72208286	72208385	6027880	0	+	0.313131	(0.29,0.33]	chr5	472574	32	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.67277	2.968495	3.26422	0.0255386	2.56761e-4	0.117089	0.00385453
chr3	186581441	186581513	3957098	0	+	0.611111	(0.59,1]	chr3	333566	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1:ENST00000681543.1:ENST00000679794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	42	2	2.5215	2.96843	3.41536	0.032241	0.00164655	0.135671	0.0163443
chr20	34294080	34294156	17946807	0	-	0.631579	(0.59,1]	chr20	1519986	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000468908.1:ENST00000606061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.59461	2.96816	3.34171	0.0259455	0.00234977	0.117079	0.0222173
chr21	29065036	29065105	18202031	0	-	0.434783	(0.42,0.455]	chr21	1544737	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1:ENST00000484403.5:ENST00000481059.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	2.90616	2.96813	3.0301	0.00162359	1.85605e-4	0.0169915	0.00297242
chr19	38729074	38729154	17323757	0	+	0.5875	(0.53,0.59]	chr19	1434378	2	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000497637.5:ENST00000477174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	72	2	2.75178	2.968125	3.18447	8.47358e-4	2.12116e-5	0.0104407	5.07604e-4
chr2	219216088	219216180	3191228	0	-	0.630435	(0.59,1]	chr2	280829	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000492953.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.76006	2.9681100000000002	3.17616	0.00434232	0.00330486	0.0339139	0.027613
chr8	123207784	123207881	9588606	0	+	0.56701	(0.53,0.59]	chr8	727199	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	10	94	2	2.84621	2.9678950000000004	3.08958	1.30551e-4	2.12343e-5	0.0024373	5.08042e-4
chr9	131198315	131198415	10496370	0	+	0.58	(0.53,0.59]	chr9	793351	12	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	123	2	2.85882	2.9678750000000003	3.07693	1.92776e-5	7.55612e-6	5.19221e-4	2.18445e-4
chr10	32925949	32926029	11444151	0	-	0.3625	(0.36,0.39]	chr10	872671	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	2.1437	2.967765	3.79183	0.0340515	8.47255e-6	0.141465	2.39831e-4
chr2	113957751	113957850	2007124	0	+	0.333333	(0.33,0.36]	chr2	190801	4	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	32	2	2.61283	2.967765	3.3227	0.00222616	7.60348e-4	0.0211992	0.00908558
chr19	17862158	17862223	17255703	0	+	0.646154	(0.59,1]	chr19	1424754	2	CDS	CDS:EXON_MRNA	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000602216.1:ENST00000597648.5:ENST00000599870.1:ENST00000600238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	274	2	2.8769	2.9676400000000003	3.05838	1.96189e-5	1.07533e-5	4.78148e-4	3.2009e-4
chr6	37170772	37170825	7136253	0	+	0.679245	(0.59,1]	chr6	549931	1	CDS	CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	13	127	2	1.66495	2.967625	4.2703	0.00755199	3.25349e-5	0.0498799	7.97331e-4
chr4	77047734	77047831	5479167	0	-	0.329897	(0.29,0.33]	chr4	439254	7	UTR3	UTR3:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9	protein_coding	protein_coding	protein_coding	protein_coding	16	104	2	2.47026	2.96728	3.4643	4.99675e-4	2.72559e-8	0.00700179	1.83928e-6
chr9	120821354	120821409	10833904	0	-	0.345455	(0.33,0.36]	chr9	820479	1	CDS	CDS:EXON_MRNA	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8:ENST00000373904.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.80608	2.96724	4.1284	0.0416784	0.00407303	0.157445	0.0324137
chr1	201151760	201151852	1446664	0	-	0.434783	(0.42,0.455]	chr1	145209	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	2.22933	2.9671000000000003	3.70487	0.0102262	1.55091e-5	0.062872	3.95473e-4
chr1	224387838	224387938	1526417	0	-	0.22	[0,0.29]	chr1	152610	28	UTR3	UTR3:EXON_MRNA:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.64823	2.96703	3.28583	0.0216669	0.00346525	0.103121	0.0293796
chr12	98598612	98598703	13036946	0	+	0.461538	(0.455,0.49]	chr12	1015009	2	CDS	CDS:UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	150	2	2.42537	2.967	3.50863	3.52534e-4	1.27294e-8	0.00535449	9.5445e-7
chr7	30083368	30083467	8201164	0	+	0.363636	(0.36,0.39]	chr7	625614	47	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHA8	ENSG00000106086.20	ENST00000622102.4:ENST00000258679.11:ENST00000649443.1:ENST00000449726.6:ENST00000396257.6:ENST00000396259.5:ENST00000440706.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	46	2	2.18868	2.9669600000000003	3.74524	0.00436393	1.17259e-5	0.0340502	3.12994e-4
chr22	41650722	41650806	18381579	0	+	0.416667	(0.39,0.42]	chr22	1564705	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	10	66	2	2.5274200000000002	2.966945	3.40647	2.09862e-4	1.67145e-5	0.00355193	4.22716e-4
chr1	160332502	160332557	1329133	0	-	0.472727	(0.455,0.49]	chr1	136102	2	CDS	CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.12994	2.96677	3.8036	0.0304832	1.59194e-4	0.130204	0.00263091
chr1	193069442	193069538	630999	0	+	0.489583	(0.455,0.49]	chr1	64101	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000415442.2:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1:ENST00000512587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.12994	2.96677	3.8036	0.0304832	1.59194e-4	0.130204	0.00263091
chr7	100092931	100093031	8949614	0	-	0.55	(0.53,0.59]	chr7	683497	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	128	2	2.4557	2.966485	3.47727	2.78917e-4	3.25795e-7	0.00447039	1.53849e-5
chr2	74214437	74214535	1891743	0	+	0.459184	(0.455,0.49]	chr2	179209	3	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	124	2	1.69098	2.9664099999999998	4.24184	0.0117333	6.25031e-10	0.0686664	6.8811e-8
chr2	74874265	74874357	1893249	0	+	0.576087	(0.53,0.59]	chr2	179584	1	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.71318	2.9662949999999997	3.21941	0.00340745	0.00266171	0.0283456	0.0240332
chr1	1048011	1048099	2354	0	+	0.659091	(0.59,1]	chr1	535	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	2.53147	2.966275	3.40108	0.00807544	1.21521e-5	0.0531324	3.23317e-4
chr1	50744683	50744775	1011022	0	-	0.402174	(0.39,0.42]	chr1	104786	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.70591	2.966265	3.22662	0.0185716	0.00257296	0.0932453	0.0229363
chr15	89196809	89196908	15093456	0	+	0.40404	(0.39,0.42]	chr15	1187100	15	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.70591	2.966265	3.22662	0.0185716	0.00257296	0.0932453	0.0229363
chr1	23083264	23083364	97790	0	+	0.57	(0.53,0.59]	chr1	11307	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	47	2	2.62309	2.96626	3.30943	0.0018255	0.00065129300000000005	0.0183913	0.00805846
chr17	47845604	47845704	16573355	0	-	0.52	(0.49,0.53]	chr17	1361460	8	UTR3	UTR3:EXON_MRNA	SP6	ENSG00000189120.5	ENST00000342234.3:ENST00000536300.2	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	2.59881	2.966025	3.33324	0.00184545	0.00162947	0.0178046	0.0169972
chr3	13371932	13372032	4046775	0	-	0.65	(0.59,1]	chr3	339660	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	86	2	2.53543	2.9659649999999997	3.3965	0.00300931	1.83913e-4	0.026728	0.00296795
chr5	181236976	181237042	7008937	0	-	0.575758	(0.53,0.59]	chr5	537302	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000514455.5:ENST00000507756.5:ENST00000502905.5:ENST00000509148.1:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000509535.5:ENST00000507273.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	328	2	2.84004	2.965945	3.09185	2.13924e-6	4.06987e-8	8.35665e-5	2.58541e-6
chr1	45013291	45013354	174329	0	+	0.555556	(0.53,0.59]	chr1	22540	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000650713.1:ENST00000651476.1:ENST00000463092.5:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000461035.5:ENST00000491300.5:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000434478.6:ENST00000460334.5:ENST00000462688.5:ENST00000490385.5:ENST00000460906.5:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000496439.1:ENST00000652514.1:ENST00000473012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	112	2	1.94312	2.9658800000000003	3.98864	0.00165674	2.31578e-7	0.0163885	1.29506e-5
chr6	27808209	27808309	7105127	0	+	0.66	(0.59,1]	chr6	543450	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC13	ENSG00000196747.4	ENST00000358739.4	protein_coding	protein_coding	protein_coding	protein_coding	19	335	2	2.64312	2.96564	3.28816	1.63979e-4	6.95688e-7	0.00268551	3.27055e-5
chr11	14468770	14468860	12281667	0	-	0.4	(0.39,0.42]	chr11	949603	2	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	8	54	2	2.60286	2.965485	3.32811	0.00182819	1.08088e-4	0.0183913	0.00193027
chr16	70539155	70539207	15729820	0	+	0.384615	(0.36,0.39]	chr16	1252923	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	1.89872	2.9654599999999998	4.0322	0.056542	0.00588589	0.19417	0.0427941
chr5	79649125	79649190	6053237	0	+	0.369231	(0.36,0.39]	chr5	474976	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	1.89872	2.9654599999999998	4.0322	0.056542	0.00588589	0.19417	0.0427941
chr12	56664383	56664478	13352209	0	-	0.347368	(0.33,0.36]	chr12	1051779	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	97	2	2.58646	2.965405	3.34435	3.41611e-5	4.72622e-7	7.52268e-4	2.35155e-5
chr16	30067519	30067590	15628405	0	+	0.591549	(0.59,1]	chr16	1239782	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5:ENST00000564688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	42	646	2	2.75868	2.9653650000000003	3.17205	3.76803e-6	7.43892e-7	1.2247e-4	3.46364e-5
chr5	140485660	140485732	6254666	0	+	0.486111	(0.455,0.49]	chr5	487544	2	CDS	CDS:UTR5:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000532219.5:ENST00000246149.10:ENST00000412116.5:ENST00000465435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.27492	2.965185	3.65545	0.0193827	3.50134e-4	0.0943643	0.0049086
chr14	55229309	55229402	14298330	0	+	0.44086	(0.42,0.455]	chr14	1117596	2	EXON_PSEUDO	EXON_PSEUDO	RP11-665C16.9	ENSG00000279392.1	ENST00000623123.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	64	2	2.79182	2.965165	3.13851	2.81794e-4	2.78182e-5	0.00451339	6.37204e-4
chr2	149582198	149582271	2933018	0	-	0.424658	(0.42,0.455]	chr2	260059	2	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.50714	2.9651199999999998	3.4231	0.00122903	0.00112541	0.0130835	0.0128481
chr17	63590055	63590154	16317554	0	+	0.383838	(0.36,0.39]	chr17	1323671	10	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.63521	2.964975	3.29474	0.00633242	0.00194306	0.0446708	0.0185233
chr8	129841846	129841944	10088428	0	-	0.367347	(0.36,0.39]	chr8	758466	24	UTR3	UTR3:EXON_MRNA	CYRIB	ENSG00000153310.19	ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.63521	2.964975	3.29474	0.00633242	0.00194306	0.0446708	0.0185233
chr6	52269155	52269226	7736638	0	-	0.56338	(0.53,0.59]	chr6	593705	2	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.49715	2.96497	4.43279	0.0455868	0.0026472	0.175638	0.0231864
chr1	93154669	93154769	1171211	0	-	0.38	(0.36,0.39]	chr1	115373	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000483033.1:ENST00000479918.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	36	2	2.82481	2.9649349999999997	3.10506	7.38785e-4	6.14057e-4	0.00924579	0.00765639
chr12	56132270	56132332	12898283	0	+	0.596774	(0.59,1]	chr12	1004230	2	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.36593	2.964925	3.56392	0.0141097	8.86707e-4	0.077233	0.0101815
chr3	23919195	23919280	3358557	0	+	0.494118	(0.49,0.53]	chr3	294135	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000643707.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	144	2	2.74623	2.964875	3.18352	1.04091e-5	7.38898e-7	2.85791e-4	3.44116e-5
chr14	100343330	100343387	14788595	0	-	0.54386	(0.53,0.59]	chr14	1158712	2	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000554601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	2.57867	2.96485	3.35103	0.00198261	2.54119e-5	0.0195088	5.894e-4
chr4	65573651	65573748	4864487	0	+	0.42268	(0.42,0.455]	chr4	400319	3	EXON_PSEUDO	EXON_PSEUDO	RP11-408P14.1	ENSG00000243199.1	ENST00000466377.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	21	2	2.50649	2.9647949999999996	3.4231	0.0302857	0.00112541	0.130016	0.0128481
chr1	207785070	207785106	690125	0	+	0.388889	(0.36,0.39]	chr1	70101	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000636114.1:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	89	2	2.80996	2.96479	3.11962	2.57303e-5	2.87217e-6	5.96665e-4	1.07589e-4
chr1	99742178	99742273	1197684	0	-	0.410526	(0.39,0.42]	chr1	116902	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.09802	2.96476	3.8315	0.00495705	7.07508e-6	0.0368301	2.27834e-4
chr17	55776296	55776394	16274524	0	+	0.561224	(0.53,0.59]	chr17	1320159	3	UTR3	UTR3:EXON_MRNA:INTRON	PCTP	ENSG00000141179.14	ENST00000268896.10:ENST00000576183.5:ENST00000573500.5:ENST00000417982.6:ENST00000325214.10:ENST00000571489.5:ENST00000576221.1:ENST00000572536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.64475	2.964485	3.28422	0.00453071	2.10061e-4	0.0351187	0.00327655
chr14	98973216	98973301	14784438	0	-	0.529412	(0.49,0.53]	chr14	1158427	5	EXON_PSEUDO	EXON_PSEUDO	RPL3P4	ENSG00000232573.1	ENST00000417615.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	92	2	2.04216	2.9642150000000003	3.88627	0.00416368	8.23116e-8	0.0326175	4.7302e-6
chr2	202883608	202883674	3128709	0	-	0.393939	(0.39,0.42]	chr2	276627	1	CDS	CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000464820.1:ENST00000463824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.77926	2.96406	4.14886	0.0429531	0.00415881	0.161091	0.0325842
chr17	59661509	59661576	16295236	0	+	0.432836	(0.42,0.455]	chr17	1321647	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	96	2	2.61085	2.9639550000000003	3.31706	7.93561e-4	4.74432e-7	0.00988333	2.11043e-5
chr1	247159686	247159749	1603308	0	-	0.460317	(0.455,0.49]	chr1	159224	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.52734	2.963715	3.40009	0.00792433	0.00120619	0.0523592	0.0129255
chr7	150948855	150948952	9128642	0	-	0.57732000000000006	(0.53,0.59]	chr7	697464	1	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	79	2	1.88327	2.963705	4.04414	0.0298124	1.4954e-7	0.129773	7.9385e-6
chr5	95654161	95654236	6107350	0	+	0.413333	(0.39,0.42]	chr5	478150	1	CDS	CDS:EXON_MRNA	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000311364.8:ENST00000458310.1:ENST00000513950.2	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.2627100000000002	2.96369	3.66467	0.0192666	3.60066e-4	0.0966228	0.00544157
chr19	6441680	6441778	17442474	0	-	0.530612	(0.53,0.59]	chr19	1456913	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9:ENST00000593600.5:ENST00000600682.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	51	2	2.68432	2.96341	3.2425	0.00118971	2.6381e-4	0.0128045	0.00427022
chr5	168548793	168548892	6968905	0	-	0.242424	[0,0.29]	chr5	532791	4	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.65703	2.96332	3.26961	0.00320067	0.00229774	0.0280721	0.0210664
chr2	128129028	128129103	2059863	0	+	0.453333	(0.42,0.455]	chr2	193230	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.7523	2.9633149999999997	3.17433	0.0153283	3.82052e-4	0.0828908	0.0052929
chr8	56073901	56073980	9834818	0	-	0.367089	(0.36,0.39]	chr8	744203	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000523936.5:ENST00000519606.5:ENST00000521289.5:ENST00000518875.5:ENST00000519369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	2.78659	2.963195	3.1398	0.0132982	1.32191e-4	0.0740932	0.00246066
chr1	161428119	161428219	1333475	0	-	0.43	(0.42,0.455]	chr1	136929	1	SS3_PROX	SS3_PROX:INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	101	748	2	2.09747	2.963155	3.82884	2.49941e-5	1e-12	5.82427e-4	2.46312e-10
chrX	15701791	15701889	18591467	0	+	0.44898	(0.42,0.455]	chrX	1588116	37	INTRON	INTRON	CA5BP1:CA5B	ENSG00000186312.10:ENSG00000169239.13	ENST00000380334.6:ENST00000380333.5:ENST00000435806.2:ENST00000498004.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	2	21	2	2.7523	2.9631350000000003	3.17397	0.0153283	0.0031821	0.0828908	0.0267094
chr1	247299741	247299838	1604022	0	-	0.43299	(0.42,0.455]	chr1	159286	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.07474	2.96312	3.8515	0.0338882	0.0119089	0.139841	0.0686664
chr10	63154398	63154489	11070552	0	+	0.43956	(0.42,0.455]	chr10	842240	3	UTR3	UTR3:EXON_MRNA	NRBF2	ENSG00000148572.16	ENST00000435510.6:ENST00000277746.11	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.07474	2.96312	3.8515	0.0338882	0.0119089	0.139841	0.0686664
chr11	29773669	29773769	12322748	0	-	0.45	(0.42,0.455]	chr11	952954	521	INTRON	INTRON	LINC02755	ENSG00000254530.2	ENST00000657392.1:ENST00000528553.2	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	2.07474	2.96312	3.8515	0.0338882	0.0119089	0.139841	0.0686664
chr15	55204724	55204821	15292643	0	-	0.43299	(0.42,0.455]	chr15	1207065	19	UTR3	UTR3:EXON_MRNA	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.07474	2.96312	3.8515	0.0338882	0.0119089	0.139841	0.0686664
chr6	126346204	126346261	7388640	0	+	0.421053	(0.42,0.455]	chr6	566388	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CENPW	ENSG00000203760.9	ENST00000368328.5:ENST00000368326.5:ENST00000368325.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.07474	2.96312	3.8515	0.0338882	0.0119089	0.139841	0.0686664
chr7	4762663	4762763	8109585	0	+	0.54	(0.53,0.59]	chr7	619657	3	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	6	58	2	2.54082	2.9631	3.38538	0.00100675	1.18366e-4	0.011962800000000001	0.00207204
chr11	59637305	59637404	12401028	0	-	0.454545	(0.42,0.455]	chr11	959467	7	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	10	78	2	2.81083	2.96298	3.11513	1.05629e-4	1.19503e-5	0.00204591	3.1819e-4
chr11	14480989	14481043	12281797	0	-	0.388889	(0.36,0.39]	chr11	949639	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.63115	2.962945	3.29474	0.0245975	0.00194306	0.114841	0.0185233
chr12	30629676	30629775	13276766	0	-	0.383838	(0.36,0.39]	chr12	1040595	8	UTR3	UTR3:EXON_MRNA	IPO8	ENSG00000133704.10	ENST00000256079.9	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.63115	2.962945	3.29474	0.0245975	0.00194306	0.114841	0.0185233
chr21	38156372	38156441	18118576	0	+	0.376812	(0.36,0.39]	chr21	1536342	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DSCR8:KCNJ15	ENSG00000198054.12:ENSG00000157551.19	ENST00000478613.5:ENST00000469658.5:ENST00000400477.7:ENST00000495344.5:ENST00000465532.5:ENST00000357704.8:ENST00000614538.1:ENST00000472602.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	2	19	2	2.63115	2.962945	3.29474	0.0245975	0.00194306	0.114841	0.0185233
chr6	24701458	24701515	7094876	0	+	0.368421	(0.36,0.39]	chr6	542175	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACOT13	ENSG00000112304.11	ENST00000537591.5:ENST00000230048.5:ENST00000476436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.63115	2.962945	3.29474	0.0245975	0.00194306	0.114841	0.0185233
chr4	143872152	143872252	5695931	0	-	0.41	(0.39,0.42]	chr4	451429	14	UTR3	UTR3:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	39	2	2.87121	2.96291	3.05461	8.55091e-4	4.65001e-4	0.0105173	0.00615886
chr1	207752212	207752309	689783	0	+	0.639175	(0.59,1]	chr1	70054	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	97	2	1.88528	2.96287	4.04046	0.00718989	9.42839e-5	0.0485995	0.0017195000000000001
chr6	27146360	27146417	7648719	0	-	0.45614	(0.455,0.49]	chr6	582720	1	UTR3	UTR3:EXON_MRNA	H2BC12	ENSG00000197903.8	ENST00000356950.2	protein_coding	protein_coding	protein_coding	protein_coding	12	92	2	2.93182	2.96285	2.99388	2.05718e-5	1.27969e-5	5.47795e-4	3.36748e-4
chrX	49562605	49562666	18694992	0	+	0.590164	(0.59,1]	chrX	1594973	2	CDS	CDS:EXON_MRNA	GAGE12F	ENSG00000236362.8	ENST00000639028.1:ENST00000440137.1	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.41177	2.9628	3.51383	0.00235332	1.11838e-4	0.0215127	0.00213742
chr6	13708841	13708941	7605947	0	-	0.42	(0.39,0.42]	chr6	580078	116	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.46573	2.9627800000000004	3.45983	0.00349672	8.68166e-5	0.0288123	0.00177086
chr7	96120704	96120801	8935576	0	-	0.268041	[0,0.29]	chr7	681931	6	UTR3	UTR3:EXON_MRNA	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	1.81505	2.962675	4.1103	0.0409713	0.00493104	0.163285	0.0366648
chr1	205716988	205717088	1462025	0	-	0.52	(0.49,0.53]	chr1	147460	43	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	21	167	2	2.64732	2.9625000000000004	3.27768	1.11603e-5	1.9789e-7	3.31686e-4	1.00759e-5
chr6	27831315	27831371	7649615	0	-	0.642857	(0.59,1]	chr6	582811	1	CDS	CDS:EXON_MRNA	H4C12	ENSG00000273542.2	ENST00000611927.2	protein_coding	protein_coding	protein_coding	protein_coding	5	87	2	2.46484	2.96245	3.46006	0.00383661	1.47498e-4	0.0310411	0.00269445
chr6	73518772	73518848	7796078	0	-	0.552632	(0.53,0.59]	chr6	597141	2	CDS	CDS:EXON_MRNA	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678508.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000679031.1:ENST00000495333.6:ENST00000678703.1:ENST00000678041.1:ENST00000677062.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	71	659	2	2.47749	2.962215	3.44694	2.61336e-6	3.55709e-10	8.99611e-5	4.64363e-8
chr9	35710988	35711082	10639606	0	-	0.56383	(0.53,0.59]	chr9	805056	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TLN1:MIR6852	ENSG00000137076.21:ENSG00000284195.1	ENST00000314888.10:ENST00000621699.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	45	2	2.37402	2.962015	3.55001	0.00230837	6.11776e-4	0.0211205	0.00818575
chrX	53192363	53192458	19075184	0	-	0.452632	(0.42,0.455]	chrX	1622217	12	UTR3	UTR3:EXON_MRNA	KDM5C	ENSG00000126012.12	ENST00000452825.7:ENST00000375401.8:ENST00000404049.7	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	2.77409	2.96183	3.14957	1.22763e-4	9.82296e-5	0.00213274	0.00193927
chr12	56272785	56272884	13349845	0	-	0.515152	(0.49,0.53]	chr12	1051002	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.60116	2.9616800000000003	3.3222	0.0056515	2.96558e-5	0.0422191	6.71364e-4
chr4	17803490	17803590	5337595	0	-	0.38	(0.36,0.39]	chr4	429241	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.85584	2.961545	3.06725	2.06648e-4	1.78887e-4	0.00350209	0.0028962
chr4	135046552	135046651	5119839	0	+	0.454545	(0.42,0.455]	chr4	414782	12	EXON_PSEUDO	EXON_PSEUDO	RP11-553P9.1	ENSG00000250144.1	ENST00000509116.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	51	2	1.86513	2.96134	4.05755	0.0357107	1.23973e-6	0.147298	4.7999e-5
chr6	7882185	7882281	7587977	0	-	0.59375	(0.59,1]	chr6	578854	8	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	66	2	2.6892	2.96134	3.23348	0.00352837	0.00147019	0.0298518	0.0149767
chr1	228687414	228687496	746527	0	+	0.439024	(0.42,0.455]	chr1	75817	1	EXON_PSEUDO	EXON_PSEUDO	FTH1P2	ENSG00000234975.6	ENST00000466086.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	23	181	2	2.81119	2.96128	3.11137	1.51856e-5	9.12132e-8	4.26269e-4	5.15848e-6
chr1	32331473	32331527	128509	0	+	0.388889	(0.36,0.39]	chr1	15941	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	2.32678	2.961255	3.59573	0.0193538	3.19976e-5	0.0943643	7.1032e-4
chr12	123348080	123348133	13595628	0	-	0.490566	(0.49,0.53]	chr12	1071131	2	CDS	CDS:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.38097	2.961075	3.54118	0.0425419	4.50577e-5	0.167547	9.4221e-4
chr17	59683386	59683461	16295481	0	+	0.4	(0.39,0.42]	chr17	1321740	1	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.91489	2.9609449999999997	4.007	0.0197788	1.77795e-6	0.0960939	6.48503e-5
chr15	90907401	90907495	15103612	0	+	0.606383	(0.59,1]	chr15	1188708	2	CDS	CDS:EXON_MRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000561046.1:ENST00000557865.5:ENST00000560616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	81	2	2.80517	2.96082	3.11647	0.00535979	3.58391e-4	0.0406564	0.00501992
chr1	169477498	169477584	1358221	0	-	0.430233	(0.42,0.455]	chr1	138672	5	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	1.71996	2.9602250000000003	4.20049	0.0542346	1.49765e-5	0.199653	3.83096e-4
chr12	51243243	51243341	12876234	0	+	0.387755	(0.36,0.39]	chr12	1000617	7	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	2.58765	2.9600299999999997	3.33241	0.00193631	8.39697e-4	0.0192272	0.00981548
chr6	149401078	149401178	7480981	0	+	0.3	(0.29,0.33]	chr6	571659	5	UTR3	UTR3:EXON_MRNA:INTRON	TAB2:SUMO4	ENSG00000055208.19:ENSG00000177688.7	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5:ENST00000484505.1:ENST00000326669.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	33	2	2.80161	2.9600150000000003	3.11842	0.00415667	1.21194e-4	0.0325842	0.00210755
chr16	56830527	56830606	15680420	0	+	0.56962	(0.53,0.59]	chr16	1246639	1	CDS	CDS:EXON_MRNA	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000569842.5:ENST00000564887.5:ENST00000542526.5	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.89916	2.9598500000000003	3.02054	0.00890406	0.00577011	0.0565003	0.0426551
chr7	128651854	128651950	8521065	0	+	0.5625	(0.53,0.59]	chr7	650032	8	EXON_PSEUDO	EXON_PSEUDO	RP11-274B21.2	ENSG00000243302.3	ENST00000465971.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	25	2	2.89916	2.9598500000000003	3.02054	0.00890406	0.00577011	0.0565003	0.0426551
chr12	50099663	50099758	12870524	0	+	0.568421	(0.53,0.59]	chr12	999966	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9:ENST00000548573.5:ENST00000549274.1:ENST00000549526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.90978	2.95984	3.0099	0.00857883	0.00600486	0.0552386	0.042887
chr3	184173219	184173318	3948136	0	+	0.373737	(0.36,0.39]	chr3	331990	26	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	13	81	2	2.503	2.9597800000000003	3.41656	1.33328e-4	1.39834e-6	0.00229039	5.82056e-5
chr9	131233641	131233733	10496736	0	+	0.369565	(0.36,0.39]	chr9	793399	1	UTR3	UTR3:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000476004.5:ENST00000528406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.02118	2.959775	3.89837	0.0251625	9.25116e-5	0.117055	0.00169222
chr12	54386165	54386264	13343650	0	-	0.525253	(0.49,0.53]	chr12	1049736	5	INTRON	INTRON	ZNF385A	ENSG00000161642.18	ENST00000352268.10:ENST00000338010.9:ENST00000549962.5:ENST00000550774.5	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.92082	2.9596549999999997	2.99849	0.00827037	0.00630123	0.0534766	0.0445415
chr2	130346017	130346112	2061567	0	+	0.526316	(0.49,0.53]	chr2	193617	1	CDS	CDS:EXON_MRNA	IMP4	ENSG00000136718.10	ENST00000409935.5:ENST00000462392.5:ENST00000464432.5:ENST00000490895.5:ENST00000473689.5:ENST00000259239.8:ENST00000409649.5:ENST00000460766.5:ENST00000428740.5:ENST00000452955.1:ENST00000460100.1:ENST00000462357.1:ENST00000475074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.92082	2.9596549999999997	2.99849	0.00827037	0.00630123	0.0534766	0.0445415
chr11	111741301	111741399	12602103	0	-	0.408163	(0.39,0.42]	chr11	976937	36	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6:ENST00000534521.5:ENST00000341980.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.86895	2.959625	3.0503	0.00570576	0.00177945	0.0424438	0.0172974
chr1	235111090	235111187	1560083	0	-	0.298969	(0.29,0.33]	chr1	156012	19	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	25	139	2	2.62484	2.95955	3.29426	1.69717e-5	3.1844e-8	4.68844e-4	2.10095e-6
chr20	35654826	35654925	17955007	0	-	0.454545	(0.42,0.455]	chr20	1521109	14	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	2.5451	2.959495	3.37389	0.00112955	5.15897e-6	0.0128875	1.58845e-4
chr11	14517693	14517745	12282192	0	-	0.442308	(0.42,0.455]	chr11	949726	2	CDS	CDS:EXON_MRNA	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000533331.5:ENST00000531156.5:ENST00000526443.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	2.1201	2.959455	3.79881	0.00744913	1.65328e-4	0.0492835	0.0029267300000000002
chr2	174223096	174223160	3021798	0	-	0.453125	(0.42,0.455]	chr2	267458	2	CDS	CDS:UTR5:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.1201	2.959455	3.79881	0.00744913	1.65328e-4	0.0492835	0.0029267300000000002
chr13	18196907	18197007	13627202	0	+	0.35	(0.33,0.36]	chr13	1073857	11	INTRON	INTRON	FAM230C	ENSG00000279516.2	ENST00000623511.1:ENST00000651377.1	lncRNA	lncRNA	lncRNA	lncRNA	3	21	2	2.78095	2.959215	3.13748	0.00388614	0.00379835	0.0322851	0.0307587
chr2	131149256	131149355	2065751	0	+	0.353535	(0.33,0.36]	chr2	194095	26	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.57909	2.959025	4.33896	0.0532274	0.00182033	0.184818	0.0183913
chr8	129841552	129841650	10088425	0	-	0.265306	[0,0.29]	chr8	758466	21	UTR3	UTR3:EXON_MRNA	CYRIB	ENSG00000153310.19	ENST00000519824.6:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000522746.5:ENST00000517654.5:ENST00000522250.5:ENST00000519540.5:ENST00000522941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	38	2	2.6799	2.95897	3.23804	0.00121378	5.85812e-5	0.0135383	0.00117676
chr11	65127645	65127737	12421631	0	-	0.630435	(0.59,1]	chr11	963732	5	UTR3	UTR3:EXON_MRNA:INTRON	SYVN1	ENSG00000162298.19	ENST00000530451.1:ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	41	2	2.61074	2.95891	3.30708	0.025486	0.00252451	0.117089	0.0226777
chr19	54193534	54193621	17390374	0	+	0.425287	(0.42,0.455]	chr19	1447193	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TSEN34	ENSG00000170892.13	ENST00000455798.6:ENST00000302937.8:ENST00000429671.7:ENST00000667261.1:ENST00000496583.1:ENST00000396383.5:ENST00000665674.2:ENST00000653273.2:ENST00000396388.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.72686	2.9588200000000002	3.19078	0.00330337	0.00310864	0.027613	0.0274272
chr3	139367079	139367145	4479564	0	-	0.424242	(0.42,0.455]	chr3	372225	2	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.72686	2.9588200000000002	3.19078	0.00330337	0.00310864	0.027613	0.0274272
chr8	97722878	97722956	9506367	0	+	0.423077	(0.42,0.455]	chr8	722720	1	CDS	CDS:UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.72686	2.9588200000000002	3.19078	0.00330337	0.00310864	0.027613	0.0274272
chrX	120072768	120072845	19194063	0	-	0.428571	(0.42,0.455]	chrX	1631791	3	CDS	CDS:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.72686	2.9588200000000002	3.19078	0.00330337	0.00310864	0.027613	0.0274272
chr5	113015661	113015760	6153915	0	+	0.262626	[0,0.29]	chr5	480731	23	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	43	2	2.16074	2.958685	3.75663	0.0222978	1.30433e-6	0.105845	5.01269e-5
chr1	43171564	43171651	967437	0	-	0.528736	(0.49,0.53]	chr1	101966	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	EBNA1BP2:MIR6733	ENSG00000117395.13:ENSG00000284410.1	ENST00000431635.6:ENST00000236051.3:ENST00000491223.5:ENST00000472982.5:ENST00000635723.1:ENST00000483082.1:ENST00000461557.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr12	896542	896637	12681540	0	+	0.505263	(0.49,0.53]	chr12	984148	6	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000542424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr12	110536936	110537036	13537945	0	-	0.51	(0.49,0.53]	chr12	1064999	38	UTR3	UTR3:EXON_MRNA	PPTC7	ENSG00000196850.6	ENST00000354300.5:ENST00000548721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr17	7220765	7220830	16103608	0	+	0.507692	(0.49,0.53]	chr17	1296134	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADVL	ENSG00000072778.20	ENST00000543245.6:ENST00000322910.9:ENST00000583312.5:ENST00000582356.5:ENST00000350303.9:ENST00000579286.5:ENST00000577857.5:ENST00000582056.5:ENST00000580263.5:ENST00000584103.5:ENST00000577191.5:ENST00000356839.10:ENST00000581562.5:ENST00000579886.2:ENST00000577433.5:ENST00000582166.1:ENST00000580365.1:ENST00000581378.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr3	52257390	52257489	4182629	0	-	0.494949	(0.49,0.53]	chr3	352627	31	UTR3	UTR3:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr4	7032339	7032436	4706787	0	+	0.515464	(0.49,0.53]	chr4	390749	21	UTR3	UTR3:EXON_MRNA	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9:ENST00000410031.5:ENST00000451522.6:ENST00000446947.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr9	128285941	128286041	10477745	0	+	0.5	(0.49,0.53]	chr9	789830	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SWI5	ENSG00000175854.14	ENST00000495313.5:ENST00000372898.6:ENST00000652598.1:ENST00000608796.6:ENST00000419867.7:ENST00000418976.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.18239	2.958665	3.73494	0.024394	0.0189345	0.111797	0.0934721
chr22	42087059	42087143	18520846	0	-	0.464286	(0.455,0.49]	chr22	1581550	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFA6	ENSG00000184983.11	ENST00000498737.8:ENST00000617763.1:ENST00000470753.1	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	1.68956	2.95854	4.22752	0.0381365	1.24055e-5	0.155455	3.28918e-4
chr4	41954199	41954297	4809488	0	+	0.357143	(0.33,0.36]	chr4	396957	1	UTR3	UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000513702.5:ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	58	2	2.55644	2.95851	3.36058	1.53305e-4	3.66613e-5	0.0025552	8.83327e-4
chr7	6403871	6403967	8114077	0	+	0.302083	(0.29,0.33]	chr7	620430	16	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.83531	2.9585	3.08169	0.00228447	0.00114594	0.0209856	0.0130468
chr19	10116894	10116989	17457691	0	-	0.589474	(0.53,0.59]	chr19	1460382	2	CDS	CDS:UTR3:EXON_MRNA	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5:ENST00000589009.5:ENST00000593066.5:ENST00000589674.1:ENST00000593095.5:ENST00000587993.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	2.63871	2.9583700000000004	3.2780300000000002	0.00148857	4.08373e-5	0.0159153	8.76332e-4
chr10	50266041	50266137	11040781	0	+	0.385417	(0.36,0.39]	chr10	841130	12	EXON_PSEUDO	EXON_PSEUDO	DYNC1I2P1	ENSG00000225137.1	ENST00000435916.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr10	96519295	96519394	11640071	0	-	0.383838	(0.36,0.39]	chr10	886559	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr12	54544570	54544670	12894136	0	+	0.37	(0.36,0.39]	chr12	1003237	20	UTR3	UTR3:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr12	125028475	125028573	13134649	0	+	0.377551	(0.36,0.39]	chr12	1026766	31	UTR3	UTR3:EXON_MRNA	BRI3BP	ENSG00000184992.13	ENST00000341446.9:ENST00000671775.2	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr14	81178234	81178333	14730355	0	-	0.363636	(0.36,0.39]	chr14	1153987	29	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr17	47138738	47138814	16571242	0	-	0.368421	(0.36,0.39]	chr17	1361116	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000527547.5:ENST00000526866.5:ENST00000573502.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr20	50890246	50890342	18006284	0	-	0.385417	(0.36,0.39]	chr20	1526241	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8	protein_coding	protein_coding	protein_coding	protein_coding	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr3	100377704	100377773	4325637	0	-	0.376812	(0.36,0.39]	chr3	360590	1	CDS	CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6:ENST00000492171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr5	81442652	81442723	6669834	0	-	0.380282	(0.36,0.39]	chr5	514959	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSBP2	ENSG00000145687.16	ENST00000320672.8:ENST00000615665.4:ENST00000509053.5:ENST00000514493.5:ENST00000504985.5:ENST00000512923.5:ENST00000510060.5:ENST00000505980.5:ENST00000515395.5:ENST00000504136.1:ENST00000509743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	10	2	2.38564	2.95829	3.53094	0.0476159	0.0305588	0.17993	0.130016
chr17	67078251	67078351	16650713	0	-	0.47	(0.455,0.49]	chr17	1369330	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.10347	2.95811	3.81275	0.0313707	0.0138827	0.13127	0.0760883
chr2	233840807	233840907	3231773	0	-	0.49	(0.455,0.49]	chr2	284588	3	CDS	CDS:EXON_MRNA	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.10347	2.95811	3.81275	0.0313707	0.0138827	0.13127	0.0760883
chr6	43019287	43019366	7154598	0	+	0.481013	(0.455,0.49]	chr6	552418	1	CDS	CDS:EXON_MRNA	KLHDC3	ENSG00000124702.18	ENST00000244670.12:ENST00000326974.9:ENST00000332245.9	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.10347	2.95811	3.81275	0.0313707	0.0138827	0.13127	0.0760883
chr11	63759591	63759691	11976864	0	+	0.45	(0.42,0.455]	chr11	918385	13	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.3893	2.957945	3.52659	0.00221606	6.87022e-4	0.0205138	0.00876781
chr1	28236642	28236735	115312	0	+	0.526882	(0.49,0.53]	chr1	14092	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP5IF1	ENSG00000130770.18	ENST00000497986.5:ENST00000335514.10:ENST00000468425.2:ENST00000465645.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.38935	2.95786	3.52637	0.00488689	6.68602e-4	0.0376157	0.00820018
chrX	110177590	110177689	18820982	0	+	0.353535	(0.33,0.36]	chrX	1603939	43	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.17058	2.9577999999999998	3.74502	0.01664	2.19782e-4	0.0878065	0.00339463
chr13	30463206	30463279	13949078	0	-	0.479452	(0.455,0.49]	chr13	1094866	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000490788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	107	2	2.43877	2.9575449999999996	3.47632	9.71227e-5	6.83986e-7	0.00176023	3.22133e-5
chr2	87825075	87825143	1934589	0	+	0.397059	(0.39,0.42]	chr2	182458	3	EXON_PSEUDO	EXON_PSEUDO	MTATP8P2	ENSG00000229604.2	ENST00000435212.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.71912	2.9575	3.19588	0.0163125	0.00321212	0.0866586	0.0280721
chr2	199271919	199272016	3114511	0	-	0.391753	(0.39,0.42]	chr2	274929	26	UTR3	UTR3:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.71912	2.9575	3.19588	0.0163125	0.00321212	0.0866586	0.0280721
chr2	171129754	171129854	3012049	0	-	0.42	(0.39,0.42]	chr2	266902	115	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000470340.1:ENST00000466220.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	30	2	2.46573	2.9574800000000003	3.44923	0.00349672	0.00105208	0.0288123	0.0123035
chr9	131260232	131260330	10870359	0	-	0.418367	(0.39,0.42]	chr9	824566	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	63	2	1.70182	2.9574800000000003	4.21314	0.00857995	3.5467e-7	0.0553062	1.85527e-5
chr6	33290173	33290244	7121648	0	+	0.380282	(0.36,0.39]	chr6	547530	1	CDS	CDS:EXON_MRNA:PRIMIRNA	PFDN6:MIR6834	ENSG00000204220.12:ENSG00000284064.1	ENST00000395131.5:ENST00000395134.3:ENST00000374607.5:ENST00000374610.6:ENST00000374606.10:ENST00000491382.1:ENST00000622807.1:ENST00000463584.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	7	52	2	2.88918	2.957305	3.02543	0.00212816	2.29139e-5	0.0206577	5.4427e-4
chr1	236550501	236550601	1568176	0	-	0.4	(0.39,0.42]	chr1	156951	16	UTR3	UTR3:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.18155	2.9572450000000003	3.73294	0.0283931	0.0190864	0.127654	0.0958835
chr13	42303471	42303569	13708865	0	+	0.418367	(0.39,0.42]	chr13	1080119	43	CDS	CDS:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.18155	2.9572450000000003	3.73294	0.0283931	0.0190864	0.127654	0.0958835
chr1	171557600	171557691	537267	0	+	0.56044	(0.53,0.59]	chr1	57662	5	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	18	174	2	2.53974	2.957215	3.37469	7.20755e-5	1.05586e-7	0.00152113	5.84437e-6
chr7	141653310	141653407	8575267	0	+	0.494845	(0.49,0.53]	chr7	654204	5	UTR3	UTR3:EXON_MRNA	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000649365.1:ENST00000649014.1:ENST00000649286.2:ENST00000649790.1:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.48488	2.95721	3.42954	0.032052	0.00105489	0.133433	0.0123035
chr3	160495305	160495405	4553038	0	-	0.42	(0.39,0.42]	chr3	376952	4	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.86368	2.9569900000000002	3.0503	0.0101619	0.00570576	0.0627153	0.0424438
chrX	150763621	150763720	18909432	0	+	0.393939	(0.39,0.42]	chrX	1610045	10	UTR3	UTR3:EXON_MRNA:INTRON	MTMR1	ENSG00000063601.17	ENST00000485376.5:ENST00000370390.7:ENST00000445323.7:ENST00000488357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.86368	2.9569900000000002	3.0503	0.0101619	0.00570576	0.0627153	0.0424438
chr12	108648768	108648850	13530512	0	-	0.585366	(0.53,0.59]	chr12	1063937	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000549387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	2.84458	2.956985	3.06939	6.54756e-4	5.21436e-4	0.00860229	0.00674101
chr2	111429508	111429608	2842697	0	-	0.49	(0.455,0.49]	chr2	253594	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	MIR4435-2HG:RP11-803D5.5	ENSG00000172965.17:ENSG00000285016.1	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000674026.1:ENST00000604981.5:ENST00000603310.5:ENST00000603827.1:ENST00000673894.1:ENST00000442293.5:ENST00000644013.1:ENST00000441075.1	lncRNA	lncRNA	lncRNA	lncRNA	6	47	2	2.47392	2.956765	3.43961	0.00157443	8.42878e-5	0.016717	0.0015859
chr19	49490474	49490477	17370746	0	+	0.333333	(0.33,0.36]	chr19	1443119	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	43	2	2.77416	2.9566600000000003	3.13916	8.34192e-4	4.50423e-5	0.00978328	0.0010411
chr16	18788980	18789013	15877031	0	-	0.484848	(0.455,0.49]	chr16	1269285	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS15A:RP11-1035H13.3	ENSG00000134419.15:ENSG00000260342.2	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000565420.5:ENST00000569083.1:ENST00000567078.2:ENST00000573554.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	37	277	2	2.95341	2.956655	2.9599	1.8097e-6	4.7413e-8	7.31278e-5	2.94229e-6
chr6	27139464	27139520	7104158	0	+	0.625	(0.59,1]	chr6	543288	2	CDS	CDS:EXON_MRNA	H4C9	ENSG00000276180.1	ENST00000615353.1	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	2.72343	2.956585	3.18974	0.00125966	5.51091e-4	0.0133806	0.00760492
chr1	173961816	173961909	1373521	0	-	0.494624	(0.49,0.53]	chr1	140031	2	CDS	CDS:EXON_MRNA	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.56183	2.9565799999999998	3.35133	0.0261296	0.00150139	0.118976	0.0152367
chr12	6919565	6919664	12715455	0	+	0.50505	(0.49,0.53]	chr12	987255	1	CDS	CDS:EXON_MRNA	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000538763.5:ENST00000545045.6:ENST00000535366.5:ENST00000535275.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	23	2	2.56183	2.9565799999999998	3.35133	0.0261296	0.00150139	0.118976	0.0152367
chr2	199348889	199348983	3115286	0	-	0.5	(0.49,0.53]	chr2	274954	3	CDS	CDS:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000483346.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.56183	2.9565799999999998	3.35133	0.0261296	0.00150139	0.118976	0.0152367
chr5	146237297	146237364	6279792	0	+	0.507463	(0.49,0.53]	chr5	489410	1	CDS	CDS:EXON_MRNA	RP11-449H3.3:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.56183	2.9565799999999998	3.35133	0.0261296	0.00150139	0.118976	0.0152367
chr19	3468621	3468721	17202210	0	+	0.34	(0.33,0.36]	chr19	1413755	60	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.31026	2.9561200000000003	3.60198	0.0519897	6.01238e-4	0.18423900000000001	0.00811676
chr22	21761748	21761848	18442368	0	-	0.39	(0.36,0.39]	chr22	1572508	22	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	13	84	2	2.0435	2.956085	3.86867	0.00201835	8.59985e-8	0.0198129	4.91455e-6
chr1	147178176	147178271	453642	0	+	0.631579	(0.59,1]	chr1	45093	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	PDIA3P1:RP11-337C18.10	ENSG00000180867.11:ENSG00000237188.5	ENST00000649713.1:ENST00000651151.1:ENST00000606856.1:ENST00000650785.1:ENST00000606757.1:ENST00000471856.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	2	40	2	2.84944	2.95601	3.06258	0.0128238	0.00616167	0.0719798	0.0438642
chr17	67940510	67940583	16333271	0	+	0.465753	(0.455,0.49]	chr17	1325034	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000582467.1:ENST00000577770.1:ENST00000584931.1:ENST00000580465.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	37	2	2.85172	2.955985	3.06025	0.010864	1.55878e-4	0.0643837	0.00259387
chr14	22589001	22589057	14526155	0	-	0.642857	(0.59,1]	chr14	1137876	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DAD1	ENSG00000129562.11	ENST00000250498.9:ENST00000535847.1:ENST00000538631.1:ENST00000543337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.9228	2.95596	2.9891200000000002	0.00981698	0.00823979	0.0612992	0.0540283
chr7	66945070	66945165	8307602	0	+	0.621053	(0.59,1]	chr7	633373	2	CDS	CDS:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000424964.6:ENST00000418375.1:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.9228	2.95596	2.9891200000000002	0.00981698	0.00823979	0.0612992	0.0540283
chr4	55636092	55636192	5433795	0	-	0.75	(0.59,1]	chr4	434926	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	181	2	1.77156	2.955935	4.14031	0.00728296	4.55677e-7	0.0488633	2.28082e-5
chr2	187465582	187465678	3070155	0	-	0.34375	(0.33,0.36]	chr2	271827	15	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.47163	2.95585	3.44007	0.0129725	1.36013e-5	0.0724783	3.54469e-4
chr2	74462773	74462863	2742896	0	-	0.488889	(0.455,0.49]	chr2	244413	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1:ENST00000489655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	62	2	2.17632	2.9558	3.73528	0.00634339	1.49591e-6	0.0446708	5.62205e-5
chr10	46016580	46016680	11471045	0	-	0.5	(0.49,0.53]	chr10	874876	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.48202	2.95578	3.42954	0.00138956	0.00105489	0.0143689	0.0123035
chr2	99396759	99396828	1954197	0	+	0.391304	(0.39,0.42]	chr2	185604	1	CDS	CDS:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11:ENST00000494190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	21	2	1.63008	2.95568	4.28128	0.0358647	0.00342611	0.147298	0.0283456
chr7	36452500	36452600	8230960	0	+	0.43	(0.42,0.455]	chr7	627573	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000491782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.36247	2.955425	3.54838	0.0462889	5.9986e-4	0.176878	0.0075062
chr3	39411648	39411712	3423834	0	+	0.59375	(0.59,1]	chr3	298009	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPSA	ENSG00000168028.14	ENST00000301821.11:ENST00000458478.5:ENST00000443003.2:ENST00000478027.2:ENST00000495394.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	85	2	2.6406	2.955315	3.27003	0.00193045	3.45884e-4	0.0192201	0.00486309
chr1	173486327	173486401	548604	0	+	0.486486	(0.455,0.49]	chr1	58297	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	180	2	2.67979	2.95512	3.23045	1.67847e-5	5.2045e-8	4.64895e-4	3.19619e-6
chr7	139304736	139304836	8565417	0	+	0.33	(0.29,0.33]	chr7	653581	70	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.66607	2.9549700000000003	4.24387	0.0424383	0.00263476	0.160073	0.0239118
chr17	28720704	28720797	16177264	0	+	0.494624	(0.49,0.53]	chr17	1305486	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	55	414	2	2.5457	2.95495	3.3642	1.38089e-6	1.72946e-9	5.23888e-5	1.84305e-7
chr3	51968875	51968967	4181183	0	-	0.456522	(0.455,0.49]	chr3	352425	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PCBP4:RP11-155D18.12:ABHD14B	ENSG00000090097.22:ENSG00000272762.5:ENSG00000114779.20	ENST00000489595.6:ENST00000488257.2:ENST00000483233.5:ENST00000315877.14:ENST00000361143.10:ENST00000487005.1:ENST00000395008.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	45	2	1.96875	2.9546799999999998	3.94061	0.0480352	2.93826e-6	0.180552	9.91141e-5
chr17	67086996	67087081	16650802	0	-	0.470588	(0.455,0.49]	chr17	1369337	3	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.50904	2.954565	3.40009	0.0310515	0.00120619	0.131262	0.0129255
chr17	8226991	8227090	16432247	0	-	0.555556	(0.53,0.59]	chr17	1340380	23	UTR3	UTR3:EXON_MRNA	CTC1	ENSG00000178971.16	ENST00000651323.1:ENST00000449476.7:ENST00000643543.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	48	449	2	2.49027	2.9542900000000003	3.41831	5.50886e-6	1.49458e-9	1.83283e-4	1.50225e-7
chr1	52020308	52020397	1018054	0	-	0.516854	(0.49,0.53]	chr1	105390	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.78962	2.95427	3.11892	0.0129044	0.00398244	0.0725185	0.0322851
chr12	6582648	6582748	13187207	0	-	0.42	(0.39,0.42]	chr12	1032308	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000646322.1:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000642637.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	32	2	2.59744	2.95427	3.3111	0.00572981	2.11919e-4	0.0417368	0.00357806
chr1	183545216	183545312	597935	0	+	0.541667	(0.53,0.59]	chr1	62098	4	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.0404	2.9542450000000002	3.86809	0.0362529	1.18973e-4	0.148525	0.00207755
chr11	66367463	66367519	12424324	0	-	0.589286	(0.53,0.59]	chr11	964642	1	CDS	CDS:UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.0404	2.9542450000000002	3.86809	0.0362529	1.18973e-4	0.148525	0.00207755
chr6	30723722	30723818	7112215	0	+	0.59375	(0.59,1]	chr6	545065	5	CDS	CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	44	693	2	2.76459	2.9541500000000003	3.14371	4.48176e-6	5.0003e-7	1.41623e-4	2.47377e-5
chr15	68187541	68187591	14994994	0	+	0.52	(0.49,0.53]	chr15	1178734	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.8671	2.954085	3.04107	0.0100489	0.00533879	0.0623334	0.0392268
chr2	74887980	74888058	1893396	0	+	0.512821	(0.49,0.53]	chr2	179632	2	CDS	CDS:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.8671	2.954085	3.04107	0.0100489	0.00533879	0.0623334	0.0392268
chr2	206130164	206130242	3133023	0	-	0.512821	(0.49,0.53]	chr2	276970	2	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5:ENST00000498520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.8671	2.954085	3.04107	0.0100489	0.00533879	0.0623334	0.0392268
chr4	70985408	70985506	4878947	0	+	0.316327	(0.29,0.33]	chr4	401906	35	UTR3	UTR3:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.77585	2.9539850000000003	3.13212	0.0143131	0.00551048	0.0780602	0.0414592
chr15	38485347	38485446	14871763	0	+	0.363636	(0.36,0.39]	chr15	1167571	8	UTR3	UTR3:EXON_MRNA	FAM98B	ENSG00000171262.11	ENST00000397609.6	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.42114	2.953915	3.48669	0.00564641	6.40815e-5	0.0422191	0.00125657
chr12	52926768	52926867	13337222	0	-	0.535354	(0.53,0.59]	chr12	1048656	4	INTRON	INTRON	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000546897.5:ENST00000546826.5:ENST00000548998.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.90953	2.95386	3.99819	0.0517711	0.0111308	0.193577	0.0665375
chr12	53415954	53416053	12886228	0	+	0.585859	(0.53,0.59]	chr12	1002329	49	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.90953	2.95386	3.99819	0.0517711	0.0111308	0.193577	0.0665375
chr7	44118003	44118064	8796714	0	-	0.557377	(0.53,0.59]	chr7	670795	2	CDS	CDS:EXON_MRNA:INTRON	POLD2	ENSG00000106628.12	ENST00000610533.6:ENST00000406581.6:ENST00000223361.7:ENST00000452185.5:ENST00000436844.5:ENST00000433715.5:ENST00000463464.5:ENST00000470867.5:ENST00000464871.1:ENST00000461116.1:ENST00000467469.1:ENST00000456038.5:ENST00000418438.1:ENST00000496539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	1.90953	2.95386	3.99819	0.0517711	0.0111308	0.193577	0.0665375
chr2	180872957	180873048	3053602	0	-	0.43956	(0.42,0.455]	chr2	270960	2	EXON_PSEUDO	EXON_PSEUDO	FTH1P20	ENSG00000226564.1	ENST00000434913.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	136	2	2.37568	2.9536800000000003	3.53168	8.0114e-4	1.85329e-8	0.00996644	1.32741e-6
chr1	44875617	44875695	972351	0	-	0.525641	(0.49,0.53]	chr1	102659	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000486491.1:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.38097	2.95367	3.52637	0.0425419	6.68602e-4	0.167547	0.00820018
chr2	10427418	10427517	1631143	0	+	0.525253	(0.49,0.53]	chr2	161840	7	UTR3	UTR3:EXON_MRNA	HPCAL1	ENSG00000115756.13	ENST00000307845.8:ENST00000381765.7:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.38097	2.95367	3.52637	0.0425419	6.68602e-4	0.167547	0.00820018
chr7	100033997	100034097	8425094	0	+	0.5	(0.49,0.53]	chr7	642419	8	CDS	CDS:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.78794	2.95343	3.11892	0.00398244	0.00251838	0.0322851	0.0226599
chr18	9337229	9337329	16752698	0	+	0.45	(0.42,0.455]	chr18	1381503	1	CDS_START	CDS_START:CDS:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10:ENST00000581641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.05515	2.953325	3.8515	0.017518	0.0119089	0.0924156	0.0686664
chr6	31817486	31817582	7116678	0	+	0.583333	(0.53,0.59]	chr6	546204	18	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	19	171	2	2.38313	2.953245	3.52336	8.72421e-5	9.7599e-8	0.00162444	6.12003e-6
chr1	116404691	116404774	423966	0	+	0.289157	[0,0.29]	chr1	41856	4	UTR3	UTR3:EXON_MRNA:INTRON	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.82443	2.95323	3.08203	0.0180803	7.1311e-4	0.0920398	0.0085671400000000009
chr3	13360343	13360417	4046657	0	-	0.581081	(0.53,0.59]	chr3	339648	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	70	2	2.15403	2.95319	3.75235	0.0118065	1.48881e-6	0.0686664	5.60262e-5
chr6	163563569	163563645	7540756	0	+	0.513158	(0.49,0.53]	chr6	575634	3	CDS	CDS:UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	99	2	2.4677	2.95315	3.4386	2.59024e-4	9.97799e-7	0.00421594	3.98163e-5
chr15	40326315	40326415	14880906	0	+	0.25	[0,0.29]	chr15	1168387	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	INAFM2	ENSG00000259330.3	ENST00000638170.2:ENST00000560415.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.40395	2.9530950000000002	3.50224	0.0210081	7.95529e-4	0.101116	0.009356
chr18	12725600	12725670	16763578	0	+	0.257143	[0,0.29]	chr18	1382699	2	UTR3	UTR3:EXON_MRNA	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586587.1:ENST00000317615.11:ENST00000588824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.40395	2.9530950000000002	3.50224	0.0210081	7.95529e-4	0.101116	0.009356
chr8	17221144	17221242	9211540	0	+	0.234694	[0,0.29]	chr8	703682	10	UTR3	UTR3:EXON_MRNA	ZDHHC2	ENSG00000104219.13	ENST00000262096.13	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.40395	2.9530950000000002	3.50224	0.0210081	7.95529e-4	0.101116	0.009356
chr2	47379835	47379902	1784419	0	+	0.358209	(0.33,0.36]	chr2	172419	2	CDS	CDS:EXON_MRNA	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9:ENST00000490733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.51887	2.95308	3.38729	0.0358636	1.20567e-4	0.147298	0.00210079
chr1	151400118	151400187	471573	0	+	0.521739	(0.49,0.53]	chr1	48188	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1:ENST00000474100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	44	2	2.30121	2.952985	3.60476	0.00182399	4.52633e-4	0.0176208	0.00642319
chr5	43298008	43298071	6560247	0	-	0.460317	(0.455,0.49]	chr5	508371	1	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	2.26324	2.952855	3.64247	0.00868189	2.341e-5	0.0558093	5.54056e-4
chr1	160998672	160998771	1331425	0	-	0.525253	(0.49,0.53]	chr1	136426	36	UTR3	UTR3:EXON_MRNA	F11R:RP11-544M22.13	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	62	2	1.73918	2.9527200000000002	4.16626	0.0213952	5.42608e-7	0.102813	2.37553e-5
chr11	112095244	112095336	12136346	0	+	0.304348	(0.29,0.33]	chr11	934907	4	UTR3	UTR3:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.99415	2.952635	3.91112	0.0333928	3.6899e-6	0.140128	1.20177e-4
chr12	100218500	100218586	13038820	0	+	0.325581	(0.29,0.33]	chr12	1015301	2	CDS	CDS:UTR3:EXON_MRNA	ACTR6	ENSG00000075089.10	ENST00000553038.5:ENST00000188312.7:ENST00000546902.5:ENST00000548180.5:ENST00000552376.5:ENST00000552064.5:ENST00000551617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	1.83055	2.952625	4.0747	0.0348758	0.00577533	0.144642	0.0417823
chr12	54350523	54350617	12892159	0	+	0.446809	(0.42,0.455]	chr12	1003028	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	89	2	2.76282	2.95262	3.14242	2.89452e-5	2.14233e-5	7.24838e-4	5.12077e-4
chrX	136874241	136874311	19250715	0	-	0.571429	(0.53,0.59]	chrX	1635448	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.14885	2.9524999999999997	3.75615	0.0262993	2.16536e-4	0.117164	0.00361336
chr2	130462815	130462915	2874599	0	-	0.56	(0.53,0.59]	chr2	257268	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	POTEI	ENSG00000196834.13	ENST00000451531.7	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.90978	2.952445	2.99511	0.00857883	9.46531e-4	0.0552386	0.010681
chr12	49021199	49021295	13323164	0	-	0.5	(0.49,0.53]	chr12	1045401	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-386G11.12:KMT2D	ENSG00000288710.1:ENSG00000167548.17	ENST00000683988.1:ENST00000526209.2:ENST00000301067.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	52	2	2.87563	2.9522700000000004	3.02891	8.23332e-4	1.52968e-4	0.0102121	0.00254995
chr6	24785799	24785899	7095342	0	+	0.35	(0.33,0.36]	chr6	542235	1	UTR3	UTR3:EXON_MRNA	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000620958.4	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.84301	2.9522500000000003	3.06149	5.76955e-4	2.51517e-4	0.00731854	0.00412169
chr15	55359694	55359790	15294010	0	-	0.333333	(0.33,0.36]	chr15	1207173	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CCPG1:DNAAF4-CCPG1	ENSG00000260916.8:ENSG00000261771.5	ENST00000442196.8:ENST00000565113.5:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1:ENST00000568592.1:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	4	36	2	2.07736	2.95212	3.82688	0.0442037	6.67671e-6	0.172163	1.97539e-4
chr16	21655820	21655917	15585608	0	+	0.257732	[0,0.29]	chr16	1235205	5	UTR3	UTR3:EXON_MRNA	METTL9	ENSG00000197006.14	ENST00000396014.8:ENST00000358154.8:ENST00000615720.4:ENST00000564733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.8304	2.95195	3.0735	0.0121878	0.00785095	0.0701019	0.0520241
chr1	197091981	197092056	1435073	0	-	0.386667	(0.36,0.39]	chr1	144005	2	CDS	CDS:EXON_MRNA	ASPM	ENSG00000066279.19	ENST00000367408.6:ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.84089	2.951905	3.06292	0.0128123	0.00499846	0.0719798	0.0370021
chr12	22659083	22659154	12785983	0	+	0.366197	(0.36,0.39]	chr12	993025	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ETNK1	ENSG00000139163.16	ENST00000671733.1:ENST00000266517.9:ENST00000538218.2:ENST00000673406.1:ENST00000672995.1:ENST00000539974.1:ENST00000673188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.84089	2.951905	3.06292	0.0128123	0.00499846	0.0719798	0.0370021
chr7	66956010	66956108	8307716	0	+	0.244898	[0,0.29]	chr7	633399	6	UTR3	UTR3:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.79116	2.9518649999999997	3.11257	0.00287618	0.00120521	0.0247002	0.0134827
chrX	53548958	53549049	19077334	0	-	0.538462	(0.53,0.59]	chrX	1622712	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	4	40	2	2.68432	2.9518649999999997	3.21941	0.00266171	0.00118971	0.0240332	0.0128045
chr6	39191276	39191372	7690373	0	-	0.583333	(0.53,0.59]	chr6	589669	4	CDS	CDS:EXON_MRNA	KCNK5	ENSG00000164626.9	ENST00000359534.4	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.47	2.9517100000000003	3.43342	0.0089333	8.93729e-5	0.0567495	0.00165837
chr21	33558209	33558303	18101242	0	+	0.404255	(0.39,0.42]	chr21	1534538	8	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	71	2	2.389	2.95169	3.51438	2.75796e-4	8.89542e-6	0.00408526	2.7461e-4
chr1	117528090	117528188	428215	0	+	0.357143	(0.33,0.36]	chr1	42268	31	UTR3	UTR3:EXON_MRNA	MAN1A2	ENSG00000198162.12	ENST00000356554.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.7655	2.9514899999999997	3.13748	0.0175892	0.00379835	0.0918323	0.0307587
chr12	46209053	46209127	13313656	0	-	0.337838	(0.33,0.36]	chr12	1043530	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.7655	2.9514899999999997	3.13748	0.0175892	0.00379835	0.0918323	0.0307587
chr4	77036794	77036889	4900555	0	+	0.357895	(0.33,0.36]	chr4	403561	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.7655	2.9514899999999997	3.13748	0.0175892	0.00379835	0.0918323	0.0307587
chr5	131392290	131392390	6221753	0	+	0.36	(0.33,0.36]	chr5	484085	13	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.7655	2.9514899999999997	3.13748	0.0175892	0.00379835	0.0918323	0.0307587
chr1	65572325	65572387	253021	0	+	0.354839	(0.33,0.36]	chr1	28809	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000462765.5:ENST00000371058.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.07736	2.95137	3.82538	0.0442037	1.40963e-4	0.172163	0.002378
chr13	51934158	51934258	14030946	0	-	0.55	(0.53,0.59]	chr13	1100362	16	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP7B	ENSG00000123191.16	ENST00000634519.1:ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000673867.1:ENST00000673923.1:ENST00000448424.7:ENST00000673696.1:ENST00000634620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	25	2	2.77921	2.951305	3.1234	0.0132865	0.00390623	0.0740932	0.0322851
chr16	68290395	68290467	15715755	0	+	0.555556	(0.53,0.59]	chr16	1251154	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5:ENST00000563080.1:ENST00000566579.5:ENST00000567346.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.7898	2.951275	3.11275	0.0128364	0.00407571	0.0719798	0.032143
chr6	31795614	31795683	7662590	0	-	0.73913	(0.59,1]	chr6	585348	2	UTR5	UTR5:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	2.85123	2.95119	3.05115	0.0022846	0.00103208	0.0209856	0.0121443
chr12	43659826	43659924	12841193	0	+	0.316327	(0.29,0.33]	chr12	997552	1	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P17	ENSG00000257907.2	ENST00000547505.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	27	2	2.63813	2.951175	3.26422	0.00803229	2.56761e-4	0.0528968	0.00385453
chr16	30064423	30064498	15628364	0	+	0.466667	(0.455,0.49]	chr16	1239755	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562302.1:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	76	2	2.74502	2.95111	3.1572	7.40026e-5	2.53088e-5	0.0014185	6.51851e-4
chr10	12249580	12249649	10927191	0	+	0.536232	(0.53,0.59]	chr10	832018	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CDC123	ENSG00000151465.14	ENST00000455773.7:ENST00000281141.9:ENST00000378900.6:ENST00000498747.1:ENST00000440613.1:ENST00000497963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr11	66271796	66271869	11989516	0	+	0.534247	(0.53,0.59]	chr11	921586	1	CDS	CDS:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr19	40441119	40441212	17566443	0	-	0.569892	(0.53,0.59]	chr19	1476366	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERTAD3	ENSG00000167565.13	ENST00000322354.4:ENST00000392028.8:ENST00000601217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr2	215326062	215326138	2377037	0	+	0.565789	(0.53,0.59]	chr2	213519	2	CDS	CDS:UTR3:EXON_MRNA	ATIC	ENSG00000138363.15	ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr2	229785756	229785855	3222670	0	-	0.535354	(0.53,0.59]	chr2	283304	1	CDS	CDS:EXON_MRNA	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr20	31721839	31721932	17940311	0	-	0.548387	(0.53,0.59]	chr20	1519118	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr5	172951503	172951602	6387679	0	+	0.565657	(0.53,0.59]	chr5	496127	8	UTR3	UTR3:EXON_MRNA	ERGIC1	ENSG00000113719.16	ENST00000393784.8:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr6	3225426	3225522	7571566	0	-	0.552083	(0.53,0.59]	chr6	577827	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TUBB2B	ENSG00000137285.11	ENST00000680070.1:ENST00000681757.1:ENST00000681707.1:ENST00000259818.8:ENST00000473006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	1.89806	2.9509950000000003	4.00393	0.0532477	0.0108084	0.184818	0.064368
chr6	34287655	34287754	7672478	0	-	0.474747	(0.455,0.49]	chr6	588026	81	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.83283	2.950985	3.06914	6.6649e-4	6.06795e-4	0.00820018	0.00817698
chr12	112022552	112022652	13094258	0	+	0.51	(0.49,0.53]	chr12	1021472	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000546477.1	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	1.9035	2.950915	3.99833	0.0295204	1.95792e-6	0.129773	7.01677e-5
chr16	30065663	30065759	15628379	0	+	0.666667	(0.59,1]	chr16	1239762	4	SS3_PROX	SS3_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	40	2	2.84748	2.95084	3.0542	0.0124539	0.00663549	0.0712518	0.0456243
chr19	17404370	17404437	17495803	0	-	0.537313	(0.53,0.59]	chr19	1467257	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2:ENST00000533098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	64	2	2.24945	2.950825	3.6522	0.00230882	2.31822e-5	0.0219135	5.49766e-4
chr2	46623763	46623815	1780459	0	+	0.288462	[0,0.29]	chr2	172091	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CRIPT	ENSG00000119878.6	ENST00000486447.1:ENST00000238892.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.11932	2.95072	3.78212	0.0332641	3.32518e-4	0.137922	0.00506816
chr4	77034708	77034806	4900533	0	+	0.44898	(0.42,0.455]	chr4	403559	3	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000510515.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.19674	2.950625	3.70451	0.0254904	2.72131e-4	0.117089	0.00404713
chr5	141571925	141571982	6875619	0	-	0.438596	(0.42,0.455]	chr5	526437	1	CDS	CDS:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.19674	2.950625	3.70451	0.0254904	2.72131e-4	0.117089	0.00404713
chr21	37705217	37705317	18245963	0	-	0.58	(0.53,0.59]	chr21	1547467	794	INTRON	INTRON	KCNJ6	ENSG00000157542.11	ENST00000609713.2:ENST00000645093.1	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.515	2.950595	3.38619	0.0292633	2.01278e-5	0.129773	4.89797e-4
chr7	73690915	73691012	8332345	0	+	0.443299	(0.42,0.455]	chr7	634568	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BUD23	ENSG00000071462.12	ENST00000432522.5:ENST00000421744.5:ENST00000265758.7:ENST00000496153.5:ENST00000478670.5:ENST00000441822.5:ENST00000436944.5:ENST00000428163.5:ENST00000463307.5:ENST00000423497.5:ENST00000430270.5:ENST00000487006.2:ENST00000430446.2:ENST00000442099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	2.86963	2.95055	3.03147	4.62477e-4	2.02875e-4	0.00613242	0.0034429
chr7	121266373	121266447	8496528	0	+	0.418919	(0.39,0.42]	chr7	648429	3	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	2.84648	2.950545	3.05461	8.55091e-4	1.96285e-5	0.0105173	4.78314e-4
chr11	118779631	118779683	12625739	0	-	0.423077	(0.42,0.455]	chr11	979581	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	1.84101	2.950275	4.05954	0.0352234	0.00617886	0.142054	0.0439741
chr21	29343418	29343515	18090050	0	+	0.453608	(0.42,0.455]	chr21	1533713	7	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.84101	2.950275	4.05954	0.0352234	0.00617886	0.142054	0.0439741
chr17	40406383	40406438	16538936	0	-	0.436364	(0.42,0.455]	chr17	1354641	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	2.59462	2.95018	3.30574	0.0062772	3.3047e-5	0.0445415	7.30918e-4
chr17	1659452	1659548	16401363	0	-	0.5625	(0.53,0.59]	chr17	1334868	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	43	2	2.72478	2.9501	3.17542	0.00324675	3.78824e-4	0.0282494	0.00525548
chr6	32169275	32169375	7664652	0	-	0.59	(0.53,0.59]	chr6	586095	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	81	2	2.0949	2.950085	3.80527	0.00477326	9.95548e-7	0.0368489	3.97538e-5
chr14	95544424	95544524	14471357	0	+	0.39	(0.36,0.39]	chr14	1130380	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	2.73394	2.950075	3.16621	0.00131831	8.32577e-5	0.0143836	0.00157156
chr6	52265234	52265309	7736594	0	-	0.426667	(0.42,0.455]	chr6	593683	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.19674	2.949735	3.70273	0.0254904	0.0215502	0.117089	0.102904
chrX	16198427	16198522	18970323	0	-	0.431579	(0.42,0.455]	chrX	1615302	1	EXON_PSEUDO	EXON_PSEUDO	RPL6P30	ENSG00000215313.3	ENST00000443382.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	15	2	2.19674	2.949735	3.70273	0.0254904	0.0215502	0.117089	0.102904
chr10	123138825	123138925	11298921	0	+	0.25	[0,0.29]	chr10	861538	12	UTR3	UTR3:EXON_MRNA	HMX3	ENSG00000188620.11	ENST00000357878.7	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	2.33679	2.9496700000000002	3.56255	0.00335866	1.49123e-5	0.0280262	4.19498e-4
chr22	41880809	41880909	18383679	0	+	0.63	(0.59,1]	chr22	1565034	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	57	2	1.96394	2.9496000000000002	3.93526	0.0453144	1.599e-4	0.174798	0.00263454
chr17	46940083	46940177	16247184	0	+	0.510638	(0.49,0.53]	chr17	1316050	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	GOSR2:RP11-156P1.2	ENSG00000108433.17:ENSG00000262633.2	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000571841.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000639822.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	2.38683	2.949555	3.51228	0.012654	7.99738e-6	0.0718207	2.28719e-4
chr3	41235723	41235783	3432581	0	+	0.533333	(0.53,0.59]	chr3	298558	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1:ENST00000644395.1:ENST00000465552.2:ENST00000482042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.37399	2.94947	3.52495	0.0126178	5.15316e-5	0.0717599	0.00105223
chr17	1674441	1674520	16401531	0	-	0.493671	(0.49,0.53]	chr17	1334910	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	2.61777	2.949375	3.28098	0.00172617	3.89192e-5	0.0178146	8.42006e-4
chr17	7587551	7587641	16105801	0	+	0.544444	(0.53,0.59]	chr17	1297037	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	MPDU1	ENSG00000129255.16	ENST00000572936.5:ENST00000571822.5:ENST00000396501.8:ENST00000359822.10:ENST00000584378.5:ENST00000250124.11:ENST00000577088.5:ENST00000572836.5:ENST00000423172.6:ENST00000572719.5:ENST00000581886.5:ENST00000585217.5:ENST00000576272.5:ENST00000574558.1:ENST00000571877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	2.515	2.949235	3.38347	0.0292633	0.00132446	0.129773	0.0138834
chr4	10075188	10075282	5311590	0	-	0.574468	(0.53,0.59]	chr4	427623	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000515743.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.515	2.949235	3.38347	0.0292633	0.00132446	0.129773	0.0138834
chr1	33010130	33010230	924422	0	-	0.47	(0.455,0.49]	chr1	97512	23	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	183	2	2.83958	2.94898	3.05838	1.60946e-6	3.59046e-7	6.5633e-5	1.66134e-5
chr12	120199376	120199476	13579762	0	-	0.53	(0.49,0.53]	chr12	1068816	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	57	455	2	2.74476	2.94894	3.15312	4.3757e-7	4.75663e-9	2.2018e-5	4.0724e-7
chr1	89712905	89713004	346878	0	+	0.464646	(0.455,0.49]	chr1	34108	3	CDS	CDS:EXON_MRNA:INTRON	LRRC8C:RP11-302M6.4	ENSG00000171488.15:ENSG00000271949.1	ENST00000479252.1:ENST00000370454.9:ENST00000370453.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	2.08503	2.94889	3.81275	0.0158994	0.0138827	0.0856643	0.0760883
chr9	92059243	92059308	10735913	0	-	0.415385	(0.39,0.42]	chr9	812117	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	1.99911	2.948795	3.89848	0.0477207	9.30194e-5	0.17993	0.00169783
chr15	44557569	44557650	14899847	0	+	0.283951	[0,0.29]	chr15	1171664	2	CDS	CDS:EXON_MRNA:INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5:ENST00000558053.1:ENST00000536248.1:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.42645	2.948665	3.47088	0.0123114	0.0015572	0.070688	0.0165415
chr12	118246278	118246376	13108949	0	+	0.469388	(0.455,0.49]	chr12	1023124	3	EXON_PSEUDO	EXON_PSEUDO	RPS2P5	ENSG00000240342.3	ENST00000488803.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	104	2	2.76705	2.948575	3.1301	2.0804e-5	4.55691e-6	5.53413e-4	1.43292e-4
chr8	47157584	47157677	9311233	0	+	0.462366	(0.455,0.49]	chr8	713302	6	EXON_PSEUDO	EXON_PSEUDO	RPL10AP2	ENSG00000188873.4	ENST00000479243.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	59	2	2.69169	2.948515	3.20534	0.00126948	1.74734e-5	0.0139061	4.38078e-4
chr4	48850014	48850082	4827433	0	+	0.485294	(0.455,0.49]	chr4	397834	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000514981.5:ENST00000512981.5:ENST00000396448.6:ENST00000512236.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	68	2	2.26324	2.94849	3.63374	0.00868189	6.69408e-7	0.0558093	2.84186e-5
chr3	184308448	184308507	3949101	0	+	0.491525	(0.49,0.53]	chr3	332359	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000473991.1:ENST00000491494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	37	2	2.94403	2.9484700000000004	2.95291	0.00122634	0.00119735	0.0134293	0.0130695
chr1	202941201	202941294	1453182	0	-	0.397849	(0.39,0.42]	chr1	146051	5	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	2.91508	2.94832	2.98156	4.41174e-4	3.09196e-5	0.0062930699999999996	6.92426e-4
chr22	20949942	20950040	18300182	0	+	0.5	(0.49,0.53]	chr22	1553647	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	42	342	2	2.7835	2.94816	3.11282	1.6312e-6	1.17509e-8	6.64679e-5	8.88725e-7
chr15	75371078	75371178	15376870	0	-	0.34	(0.33,0.36]	chr15	1215753	18	UTR3	UTR3:EXON_MRNA	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.07736	2.9478400000000002	3.81832	0.0442037	0.0135793	0.172163	0.0745701
chr2	75660624	75660722	1894615	0	+	0.357143	(0.33,0.36]	chr2	179770	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MRPL19:RP11-342K6.1	ENSG00000115364.14:ENSG00000270696.1	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1:ENST00000604845.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	12	2	2.07736	2.9478400000000002	3.81832	0.0442037	0.0135793	0.172163	0.0745701
chr9	131412325	131412425	10497921	0	+	0.35	(0.33,0.36]	chr9	793465	177	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.07736	2.9478400000000002	3.81832	0.0442037	0.0135793	0.172163	0.0745701
chr2	28799203	28799303	1702890	0	+	0.46	(0.455,0.49]	chr2	167041	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	39	2	2.69053	2.9476050000000003	3.20468	0.0182983	6.38295e-5	0.0925808	0.00125289
chr7	127844373	127844424	8516872	0	+	0.529412	(0.49,0.53]	chr7	649724	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	2.8671	2.94733	3.02756	0.0100489	2.24576e-5	0.0623334	5.34743e-4
chr11	62629684	62629713	12409748	0	-	0.586207	(0.53,0.59]	chr11	961262	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.34461	2.94731	3.55001	0.0457008	6.11776e-4	0.168044	0.00818575
chr12	120701564	120701662	13117522	0	+	0.520408	(0.49,0.53]	chr12	1024005	52	UTR3	UTR3:EXON_MRNA	MLEC	ENSG00000110917.8	ENST00000228506.8	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	1.94299	2.947295	3.9516	0.0152714	6.96459e-5	0.0828908	0.0013446
chr3	31617939	31617988	3392305	0	+	0.44898	(0.42,0.455]	chr3	295050	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	32	2	2.11785	2.947255	3.77666	0.0154862	1.85215e-4	0.0836691	0.00296795
chr10	73771579	73771676	11115886	0	+	0.525773	(0.49,0.53]	chr10	845933	6	UTR3	UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	35	2	2.66439	2.947225	3.23006	0.00253719	0.00134122	0.0233955	0.0139818
chr16	28379724	28379797	15904972	0	-	0.534247	(0.53,0.59]	chr16	1273440	3	UTR3	UTR3:EXON_MRNA	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.35511	2.947205	3.5393	0.0445399	6.46017e-4	0.172163	0.00799743
chr7	158759485	158759581	9159574	0	-	0.46875	(0.455,0.49]	chr7	699743	1	CDS	CDS:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.69053	2.947005	3.20348	0.0182983	3.27782e-4	0.0925808	0.0046686
chr20	56403922	56404019	17834516	0	+	0.371134	(0.36,0.39]	chr20	1507915	3	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9:ENST00000493039.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.1437	2.946885	3.75007	0.0340515	2.12157e-4	0.141465	0.00329275
chr19	11111576	11111639	17230090	0	+	0.619048	(0.59,1]	chr19	1419580	2	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000560467.1:ENST00000560173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	71	2	2.80637	2.94672	3.08707	0.00274489	8.79989e-4	0.0238522	0.0107294
chr1	40997459	40997526	156569	0	+	0.462687	(0.455,0.49]	chr1	19693	2	CDS	CDS:EXON_MRNA	CTPS1	ENSG00000171793.16	ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.1:ENST00000649124.1:ENST00000498694.2:ENST00000648801.1:ENST00000463285.6:ENST00000372616.1:ENST00000650634.1:ENST00000649215.1:ENST00000486889.2:ENST00000463423.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	1.96875	2.9466900000000003	3.92463	0.0480352	0.0113417	0.180552	0.0665375
chr2	10344851	10344951	1630309	0	+	0.48	(0.455,0.49]	chr2	161786	143	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	1.96875	2.9466900000000003	3.92463	0.0480352	0.0113417	0.180552	0.0665375
chr6	43614366	43614457	7159303	0	+	0.461538	(0.455,0.49]	chr6	553360	8	CDS	CDS:UTR3:EXON_MRNA	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.96875	2.9466900000000003	3.92463	0.0480352	0.0113417	0.180552	0.0665375
chr17	29286278	29286374	16491134	0	-	0.489583	(0.455,0.49]	chr17	1348893	4	CDS	CDS:EXON_MRNA:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.53286	2.9466799999999997	3.3605	0.0282409	0.00147278	0.124386	0.0157578
chr2	216125916	216125973	2379906	0	+	0.421053	(0.42,0.455]	chr2	213786	1	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000493706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.51988	2.946585	3.37329	0.00300574	0.00136107	0.0267032	0.0141115
chr1	32779452	32779523	923510	0	-	0.591549	(0.59,1]	chr1	97318	2	CDS	CDS:UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5:ENST00000478828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.42639	2.946495	3.4666	0.0409084	0.00133574	0.163285	0.0139317
chr6	31778966	31779047	7662389	0	-	0.641975	(0.59,1]	chr6	585256	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.42639	2.946495	3.4666	0.0409084	0.00133574	0.163285	0.0139317
chr11	67584684	67584772	11996972	0	+	0.613636	(0.59,1]	chr11	923165	1	CDS	CDS:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000489040.1:ENST00000498765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	279	2	2.63986	2.9464449999999998	3.25303	5.059e-5	4.75278e-6	0.00103835	1.63789e-4
chr1	65621405	65621458	253527	0	+	0.301887	(0.29,0.33]	chr1	28883	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1:ENST00000471762.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	2.9319	2.946395	2.96089	0.00145571	5.56633e-4	0.0148357	0.0076748
chr12	93408553	93408652	13472799	0	-	0.353535	(0.33,0.36]	chr12	1059385	30	UTR3	UTR3:EXON_MRNA	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.63456	2.94638	3.2582	0.00707461	0.00230915	0.0478528	0.0211205
chr2	28788733	28788809	1702782	0	+	0.355263	(0.33,0.36]	chr2	167028	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.63456	2.94638	3.2582	0.00707461	0.00230915	0.0478528	0.0211205
chr2	161411301	161411400	2165399	0	+	0.383838	(0.36,0.39]	chr2	199410	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5:ENST00000492908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	44	2	2.35745	2.94637	3.53529	0.00143393	6.0978e-5	0.0147046	0.00132411
chr19	1438806	1438884	17193274	0	+	0.602564	(0.59,1]	chr19	1412192	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	391	2	2.94594	2.9462849999999996	2.94663	1.14979e-5	3.12765e-6	3.40027e-4	1.0463e-4
chr2	15628637	15628710	1650984	0	+	0.410959	(0.39,0.42]	chr2	162973	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	2.85416	2.9460499999999996	3.03794	0.00225069	1.79125e-4	0.021386	0.00289872
chr1	11082687	11082782	859317	0	-	0.484211	(0.455,0.49]	chr1	86860	1	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.69053	2.94561	3.20069	0.0182983	0.00285821	0.0925808	0.0245841
chr1	203707861	203707942	669543	0	+	0.481481	(0.455,0.49]	chr1	67438	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.69053	2.94561	3.20069	0.0182983	0.00285821	0.0925808	0.0245841
chr16	47502990	47503090	15644783	0	+	0.47	(0.455,0.49]	chr16	1243345	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHKB	ENSG00000102893.16	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.69053	2.94561	3.20069	0.0182983	0.00285821	0.0925808	0.0245841
chr21	33516988	33517064	18220462	0	-	0.460526	(0.455,0.49]	chr21	1546349	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.69053	2.94561	3.20069	0.0182983	0.00285821	0.0925808	0.0245841
chr5	224451	224521	5847909	0	+	0.485714	(0.455,0.49]	chr5	459536	2	CDS	CDS:UTR3:EXON_MRNA	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000502379.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000509632.5:ENST00000504824.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.69053	2.94561	3.20069	0.0182983	0.00285821	0.0925808	0.0245841
chr1	26277577	26277671	108893	0	+	0.489362	(0.455,0.49]	chr1	12966	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	1.8708	2.9456	4.0204	0.0324007	0.00736097	0.134751	0.0490627
chr14	69455798	69455866	14373428	0	+	0.470588	(0.455,0.49]	chr14	1123173	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC39A9	ENSG00000029364.12	ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1:ENST00000554023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	1.8708	2.9456	4.0204	0.0324007	0.00736097	0.134751	0.0490627
chr3	9475566	9475651	3298365	0	+	0.505882	(0.49,0.53]	chr3	289607	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000459941.1:ENST00000466826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	44	2	2.61777	2.945525	3.27328	0.00172617	2.21441e-4	0.0178146	0.00341572
chr20	3931578	3931678	17883240	0	-	0.48	(0.455,0.49]	chr20	1513717	44	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.75587	2.945435	3.135	0.00293507	1.04065e-4	0.025146	0.002022
chr9	35707347	35707417	10639561	0	-	0.557143	(0.53,0.59]	chr9	805033	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5:ENST00000495712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	60	2	2.94125	2.945265	2.94928	0.0012261800000000001	9.80612e-5	0.0135648	0.00177549
chr3	183651002	183651093	3945742	0	+	0.43956	(0.42,0.455]	chr3	331411	7	CDS	CDS:EXON_MRNA:INTRON	KLHL24	ENSG00000114796.16	ENST00000242810.11:ENST00000454652.6:ENST00000475827.5:ENST00000476808.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.83064	2.94509	4.05954	0.0149305	0.00617886	0.081162	0.0439741
chr2	86144709	86144795	2772784	0	-	0.465116	(0.455,0.49]	chr2	246309	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.51261	2.94501	3.37741	0.00280343	1.27402e-4	0.0242354	0.00241206
chr16	51646231	51646321	15663187	0	+	0.455556	(0.455,0.49]	chr16	1244824	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000565308.2:ENST00000562726.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	2.71913	2.944845	3.17056	0.00103266	4.1243e-4	0.011478	0.00604953
chr9	92223417	92223489	10736846	0	-	0.416667	(0.39,0.42]	chr9	812230	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.69374	2.94481	3.19588	0.00386013	0.00321212	0.0310764	0.0280721
chr17	82057994	82058091	16710555	0	-	0.505155	(0.49,0.53]	chr17	1378082	1	CDS	CDS:UTR3:EXON_MRNA	DUS1L	ENSG00000169718.18	ENST00000306796.10:ENST00000354321.11:ENST00000578846.5:ENST00000577574.5:ENST00000538833.6:ENST00000579854.5:ENST00000542088.2:ENST00000584871.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.13501	2.9448049999999997	3.7546	0.0287874	2.09468e-4	0.128869	0.00327655
chr1	632133	632230	490	0	+	0.443299	(0.42,0.455]	chr1	106	12	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	43	281	2	2.65638	2.944675	3.23297	4.89898e-7	5.30683e-8	2.43114e-5	3.24874e-6
chr1	222732714	222732813	724609	0	+	0.292929	(0.29,0.33]	chr1	73180	1	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.24226	2.944675	3.64709	0.0306054	3.76873e-4	0.130226	0.00523508
chr12	53414677	53414776	12886215	0	+	0.313131	(0.29,0.33]	chr12	1002329	36	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.24226	2.944675	3.64709	0.0306054	3.76873e-4	0.130226	0.00523508
chr6	36981587	36981672	7683336	0	-	0.611765	(0.59,1]	chr6	589252	1	CDS	CDS:EXON_MRNA	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10:ENST00000460219.2	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.04362	2.944595	3.84557	0.0410704	0.036186	0.163285	0.145024
chr19	40826189	40826283	17567741	0	-	0.585106	(0.53,0.59]	chr19	1476671	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	CYP2F2P	ENSG00000237118.3	ENST00000641827.1:ENST00000437853.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	62	2	2.8006	2.9444600000000003	3.08832	0.00233666	4.03289e-5	0.0221314	8.67021e-4
chr21	32269706	32269803	18213050	0	-	0.329897	(0.29,0.33]	chr21	1545415	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MIS18A	ENSG00000159055.4	ENST00000290130.4:ENST00000486363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	2.45373	2.94443	3.43513	0.0156405	1.46172e-5	0.084273700000000007	3.76794e-4
chr17	51159979	51160030	16266524	0	+	0.509804	(0.49,0.53]	chr17	1319583	1	CDS	CDS:EXON_MRNA	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000480143.5:ENST00000512768.1:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	2.87268	2.944425	3.01617	0.00175078	8.62231e-4	0.0180053	0.0100487
chr8	108216411	108216462	10002445	0	-	0.411765	(0.39,0.42]	chr8	754166	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	132	2	2.70648	2.9443799999999998	3.18228	8.18426e-6	3.1524e-6	2.55374e-4	1.05314e-4
chrX	81297792	81297887	18750149	0	+	0.357895	(0.33,0.36]	chrX	1600060	7	UTR3	UTR3:EXON_MRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6	protein_coding	protein_coding	protein_coding	protein_coding	11	65	2	2.84974	2.944355	3.03897	5.76886e-5	2.12757e-5	0.0012782	5.08963e-4
chr5	73502921	73503021	6032188	0	+	0.44	(0.42,0.455]	chr5	473085	1	CDS_START	CDS_START:CDS:EXON_MRNA	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000507081.6:ENST00000676856.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	44	322	2	2.75539	2.94435	3.13331	5.72848e-7	1.51506e-8	2.75824e-5	1.10999e-6
chr11	9589491	9589589	11793806	0	+	0.316327	(0.29,0.33]	chr11	903118	10	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	60	2	2.401	2.9443099999999998	3.48762	7.57634e-4	2.18993e-6	0.00946127	7.72993e-5
chr5	116051916	116052009	6777488	0	-	0.430108	(0.42,0.455]	chr5	520016	1	EXON_PSEUDO	EXON_PSEUDO	CTD-2287O16.1	ENSG00000185641.6	ENST00000469891.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	31	231	2	2.89695	2.944295	2.99164	1.94206e-6	9.64223e-8	7.69575e-5	5.41532e-6
chr2	206162488	206162551	2337611	0	+	0.444444	(0.42,0.455]	chr2	211084	1	CDS	CDS:UTR3:EXON_MRNA	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000429769.5:ENST00000392222.7:ENST00000455150.1:ENST00000482103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.89192	2.9442899999999996	2.99666	0.00157686	0.00104775	0.015761	0.0123035
chr7	105565447	105565497	8974496	0	-	0.34	(0.33,0.36]	chr7	686872	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EFCAB10	ENSG00000185055.11	ENST00000469099.5:ENST00000480514.6:ENST00000485614.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.51887	2.94423	3.36959	0.0358636	0.0014168	0.147298	0.0145694
chr1	6645883	6645978	845718	0	-	0.536842	(0.53,0.59]	chr1	85449	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJC11	ENSG00000007923.16	ENST00000451196.5:ENST00000377577.10:ENST00000294401.11:ENST00000426784.1:ENST00000473993.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr10	100548336	100548436	11220762	0	+	0.55	(0.53,0.59]	chr10	854069	3	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr11	133709	133778	12225070	0	-	0.565217	(0.53,0.59]	chr11	942991	3	EXON_LNCRNA	EXON_LNCRNA	LINC01001	ENSG00000230724.9	ENST00000526704.6:ENST00000607448.5:ENST00000527683.1	lncRNA	lncRNA	lncRNA	lncRNA	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr12	120223775	120223833	13579941	0	-	0.551724	(0.53,0.59]	chr12	1068890	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000536957.5:ENST00000323871.9:ENST00000538144.5:ENST00000547983.5:ENST00000551327.5:ENST00000543331.1:ENST00000546532.5:ENST00000548912.5:ENST00000552550.5:ENST00000440827.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr19	3782617	3782717	17429122	0	-	0.56	(0.53,0.59]	chr19	1454438	4	SS5_PROX	SS5_PROX:INTRON	MATK	ENSG00000007264.15	ENST00000619596.4:ENST00000395040.6:ENST00000310132.11:ENST00000395045.6:ENST00000585778.5:ENST00000590493.5:ENST00000588983.5:ENST00000587180.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr19	43733625	43733679	17580310	0	-	0.555556	(0.53,0.59]	chr19	1479032	1	CDS	CDS:EXON_MRNA	SMG9	ENSG00000105771.14	ENST00000270066.11:ENST00000601170.5:ENST00000594081.1:ENST00000598860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr2	27200340	27200435	2569353	0	-	0.589474	(0.53,0.59]	chr2	231180	9	UTR3	UTR3:EXON_MRNA	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000461757.1:ENST00000488743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr2	86045616	86045692	2772142	0	-	0.565789	(0.53,0.59]	chr2	246202	1	CDS	CDS:EXON_MRNA	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1	protein_coding	protein_coding	protein_coding	protein_coding	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chrX	49175672	49175772	19065145	0	-	0.58	(0.53,0.59]	chrX	1621025	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PRICKLE3	ENSG00000012211.13	ENST00000599218.6:ENST00000540849.5:ENST00000453382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	14	2	2.515	2.94415	3.3733	0.0529193	0.0292633	0.18423900000000001	0.129773
chr16	30070114	30070212	15628438	0	+	0.581633	(0.53,0.59]	chr16	1239798	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	120	1053	2	2.82623	2.94391	3.06159	4.33907e-8	6.38475e-9	2.72221e-6	5.75325e-7
chr1	150974810	150974906	1291472	0	-	0.75	(0.59,1]	chr1	128718	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000361419.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	201	2	1.96071	2.943875	3.92704	0.00335167	3.80938e-7	0.0288333	1.74849e-5
chr17	80140073	80140140	16704288	0	-	0.552239	(0.53,0.59]	chr17	1376665	2	CDS	CDS:EXON_MRNA	EIF4A3	ENSG00000141543.12	ENST00000649764.2:ENST00000647795.1:ENST00000576547.2:ENST00000570837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.0693	2.943845	3.81839	0.0184435	0.0160468	0.0945306	0.0860154
chr19	58548350	58548408	17413334	0	+	0.568965	(0.53,0.59]	chr19	1451200	2	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597172.5:ENST00000601150.5:ENST00000597995.1:ENST00000597136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	1.70379	2.9437599999999997	4.18373	0.0330081	1.85867e-5	0.138711	4.56627e-4
chr1	19344353	19344434	877826	0	-	0.382716	(0.36,0.39]	chr1	90672	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.70097	2.943695	3.18642	0.00359152	4.47648e-4	0.0302391	0.00602369
chr1	219984205	219984257	1510832	0	-	0.384615	(0.36,0.39]	chr1	151010	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000485821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	35	2	2.70097	2.943695	3.18642	0.00359152	4.47648e-4	0.0302391	0.00602369
chr4	150264731	150264830	5725450	0	-	0.292929	(0.29,0.33]	chr4	452660	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000515096.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.67277	2.94366	3.21455	0.0255386	0.00283988	0.117089	0.0245061
chr8	47933019	47933095	9817149	0	-	0.342105	(0.33,0.36]	chr8	742855	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.63456	2.9436400000000003	3.25272	0.00707461	2.63256e-4	0.0478528	0.00393206
chr3	182944796	182944895	4615673	0	-	0.373737	(0.36,0.39]	chr3	380839	69	UTR3	UTR3:EXON_MRNA	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.48922	2.943625	3.39803	0.0110399	0.00122711	0.0652374	0.0130695
chr21	43695879	43695979	18135753	0	+	0.39	(0.36,0.39]	chr21	1538248	26	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	1.85489	2.943545	4.0322	0.0350721	0.00588589	0.141601	0.0427941
chr3	100744832	100744931	3637757	0	+	0.545455	(0.53,0.59]	chr3	311871	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	56	2	2.76329	2.943345	3.1234	0.00390623	1.32979e-4	0.0322851	0.00228677
chr4	108621959	108622024	5038301	0	+	0.461538	(0.455,0.49]	chr4	409825	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000503574.1:ENST00000506397.5:ENST00000394668.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	241	2	2.7819	2.94332	3.10474	4.14888e-7	3.08303e-7	1.88595e-5	1.6457e-5
chr2	135710144	135710231	2082806	0	+	0.402299	(0.39,0.42]	chr2	195372	2	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000445855.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.55844	2.943275	3.32811	0.0263695	0.00182819	0.117164	0.0183913
chr9	104759261	104759338	10395931	0	+	0.402597	(0.39,0.42]	chr9	783254	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NIPSNAP3A	ENSG00000136783.10	ENST00000374767.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.55844	2.943275	3.32811	0.0263695	0.00182819	0.117164	0.0183913
chr4	99061515	99061615	4999738	0	+	0.46	(0.455,0.49]	chr4	407952	3	UTR3	UTR3:EXON_MRNA	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000510133.5:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	12	77	2	2.38582	2.94315	3.50048	1.39336e-4	5.99835e-5	0.00235899	0.00130886
chr15	66491265	66491358	14983876	0	+	0.27957	[0,0.29]	chr15	1177919	8	UTR3	UTR3:EXON_MRNA	MAP2K1	ENSG00000169032.10	ENST00000307102.10:ENST00000566326.1	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.77356	2.943065	3.11257	0.00120521	9.10413e-4	0.0134827	0.0103519
chr5	154950870	154950938	6315374	0	+	0.441176	(0.42,0.455]	chr5	492594	2	CDS	CDS:EXON_MRNA:INTRON	MRPL22	ENSG00000082515.18	ENST00000523037.6:ENST00000265229.12:ENST00000439747.7:ENST00000522038.5:ENST00000519059.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	36	2	1.97508	2.943025	3.91097	0.0147202	8.75299e-5	0.0802571	0.0016272
chr18	9954111	9954211	16756131	0	+	0.39	(0.36,0.39]	chr18	1381800	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	80	2	2.46943	2.942995	3.41656	1.6661e-4	1.39834e-6	0.00271635	5.82056e-5
chr13	45337197	45337291	14005925	0	-	0.329787	(0.29,0.33]	chr13	1098085	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000528619.5:ENST00000529421.5:ENST00000484604.5:ENST00000490277.1:ENST00000533567.5:ENST00000530245.5:ENST00000379060.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	41	224	2	2.72573	2.942695	3.15966	1.58149e-6	8.35727e-9	6.46312e-5	6.64471e-7
chr6	26158450	26158550	7101295	0	+	0.65	(0.59,1]	chr6	542810	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2:ENST00000377777.5	protein_coding	protein_coding	protein_coding	protein_coding	14	224	2	2.56851	2.94266	3.31681	1.74551e-4	5.38754e-6	0.00283469	1.80396e-4
chr6	8079889	8079989	7589983	0	-	0.42	(0.39,0.42]	chr6	578980	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	95	2	2.54525	2.94262	3.33999	6.03386e-4	3.74402e-7	0.00814312	1.72666e-5
chr11	95831256	95831351	12086575	0	+	0.357895	(0.33,0.36]	chr11	931528	1	UTR3	UTR3:EXON_MRNA	CEP57	ENSG00000166037.11	ENST00000537677.5:ENST00000325486.9:ENST00000325542.10:ENST00000539855.5:ENST00000540830.5:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	35	2	2.31697	2.9425749999999997	3.56818	0.00966431	3.90735e-5	0.0606263	8.43777e-4
chr12	53295567	53295639	12885725	0	+	0.513889	(0.49,0.53]	chr12	1002249	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	PFDN5:RP11-680A11.7	ENSG00000123349.15:ENSG00000288663.1	ENST00000551018.5:ENST00000550069.2:ENST00000676527.1:ENST00000677326.1:ENST00000549759.2:ENST00000677982.1:ENST00000628881.2:ENST00000679196.1:ENST00000676940.1:ENST00000676632.1:ENST00000676468.1:ENST00000351500.7:ENST00000550880.5:ENST00000678256.1:ENST00000677199.1:ENST00000550846.5:ENST00000243040.10:ENST00000334478.9:ENST00000547130.6:ENST00000552341.5:ENST00000678284.1:ENST00000551223.5:ENST00000549995.1:ENST00000677184.1:ENST00000552742.6:ENST00000677712.1:ENST00000550513.1:ENST00000547228.1:ENST00000678985.1:ENST00000553171.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	8	61	2	2.46846	2.942305	3.41615	4.21053e-4	9.74162e-5	0.00571742	0.00193088
chr5	146164309	146164390	6891583	0	-	0.37037	(0.36,0.39]	chr5	527577	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	2.29974	2.94225	3.58476	0.00926291	5.01956e-4	0.0586162	0.00653592
chr8	37862595	37862695	9794203	0	-	0.39	(0.36,0.39]	chr8	740400	41	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.29974	2.94225	3.58476	0.00926291	5.01956e-4	0.0586162	0.00653592
chr7	40134467	40134567	8787151	0	-	0.66	(0.59,1]	chr7	669957	1	CDS_START	CDS_START:CDS:EXON_MRNA	MPLKIP	ENSG00000168303.9	ENST00000306984.8	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.76802	2.9422449999999998	3.11647	0.0158525	0.00535979	0.0854671	0.0406564
chr15	40220941	40221032	14880230	0	+	0.318681	(0.29,0.33]	chr15	1168286	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BUB1B:PAK6:BUB1B-PAK6	ENSG00000156970.13:ENSG00000137843.12:ENSG00000259288.7	ENST00000412359.7:ENST00000287598.11:ENST00000453867.7:ENST00000441369.6:ENST00000558658.6:ENST00000559435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.80161	2.94211	3.08261	0.0048227	0.00415667	0.0365653	0.0325842
chr16	28724720	28724783	15619224	0	+	0.460317	(0.455,0.49]	chr16	1238297	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	RP11-231C14.10:EIF3C:MIR6862-2	ENSG00000288630.1:ENSG00000184110.15:ENSG00000278340.1	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000614755.1	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:primary_miRNA	10	88	2	2.25245	2.942095	3.63174	0.0025291	1.90988e-7	0.0233955	9.79456e-6
chr19	18571826	18571924	17258792	0	+	0.663265	(0.59,1]	chr19	1425533	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000596304.5:ENST00000430157.6:ENST00000596273.5:ENST00000442744.7:ENST00000598814.1:ENST00000595683.5:ENST00000599256.5:ENST00000595158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	60	997	2	2.29714	2.9420450000000002	3.58695	7.98347e-5	5.85761e-9	0.00166387	4.90413e-7
chr1	28532170	28532260	117353	0	+	0.588889	(0.53,0.59]	chr1	14339	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000419074.5:ENST00000373832.5:ENST00000373831.7:ENST00000411533.5:ENST00000430407.1:ENST00000429051.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.27113	2.9420349999999997	3.61294	0.0310038	0.0178853	0.130016	0.0918323
chr1	39753452	39753550	151205	0	+	0.581633	(0.53,0.59]	chr1	18844	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.27113	2.9420349999999997	3.61294	0.0310038	0.0178853	0.130016	0.0918323
chr9	35092098	35092194	10638392	0	-	0.583333	(0.53,0.59]	chr9	804659	10	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PIGO	ENSG00000165282.14	ENST00000378617.4:ENST00000298004.9:ENST00000361778.6:ENST00000474436.1:ENST00000465745.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.27113	2.9420349999999997	3.61294	0.0310038	0.0178853	0.130016	0.0918323
chr1	37996950	37997041	950319	0	-	0.582418	(0.53,0.59]	chr1	100148	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	51	2	2.45052	2.94197	3.43342	0.00355092	8.93729e-5	0.0300049	0.00165837
chr1	156309121	156309198	1314021	0	-	0.545455	(0.53,0.59]	chr1	133399	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	72	2	2.63871	2.941945	3.24518	0.00148857	1.39722e-5	0.0159153	3.61675e-4
chr16	70269617	70269690	15997063	0	-	0.657534	(0.59,1]	chr16	1284660	1	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.89474	2.94193	2.9891200000000002	0.00823979	0.00190546	0.0540283	0.018313
chr1	27970637	27970735	911234	0	-	0.397959	(0.39,0.42]	chr1	95292	4	UTR3	UTR3:EXON_MRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.88836	2.9417150000000003	2.99507	0.0102432	0.00637824	0.062872	0.0449937
chr1	32196789	32196889	127258	0	+	0.4	(0.39,0.42]	chr1	15695	17	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.88836	2.9417150000000003	2.99507	0.0102432	0.00637824	0.062872	0.0449937
chr11	33237167	33237248	11900854	0	+	0.419753	(0.39,0.42]	chr11	909214	3	EXON_PSEUDO	EXON_PSEUDO	RP1-89D4.1	ENSG00000241255.1	ENST00000473603.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.88836	2.9417150000000003	2.99507	0.0102432	0.00637824	0.062872	0.0449937
chr16	53157444	53157541	15665904	0	+	0.412371	(0.39,0.42]	chr16	1245065	14	CDS	CDS:UTR5:EXON_MRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.88836	2.9417150000000003	2.99507	0.0102432	0.00637824	0.062872	0.0449937
chr4	99949570	99949662	5551596	0	-	0.413043	(0.39,0.42]	chr4	443723	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5:ENST00000527366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	2.88836	2.9417150000000003	2.99507	0.0102432	0.00637824	0.062872	0.0449937
chr7	4771342	4771442	8109672	0	+	0.26	[0,0.29]	chr7	619657	90	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.80134	2.941685	3.08203	0.0049344	7.1311e-4	0.0379087	0.0085671400000000009
chr10	99402579	99402650	11657475	0	-	0.507042	(0.49,0.53]	chr10	888023	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000489349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.8671	2.9416349999999998	3.01617	0.0100489	8.62231e-4	0.0623334	0.0100487
chr5	140705756	140705849	6255960	0	+	0.494624	(0.49,0.53]	chr5	487973	1	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8:ENST00000506644.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	30	2	2.8671	2.9416349999999998	3.01617	0.0100489	8.62231e-4	0.0623334	0.0100487
chr17	30248654	30248744	16495759	0	-	0.377778	(0.36,0.39]	chr17	1349314	6	UTR3	UTR3:EXON_MRNA	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578795.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	81	2	2.59718	2.941415	3.28565	9.13547e-5	3.2454e-6	0.00183124	1.07876e-4
chr2	175178402	175178495	3028025	0	-	0.290323	(0.29,0.33]	chr2	268125	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5MC3	ENSG00000154518.10	ENST00000284727.9:ENST00000409194.5:ENST00000392541.3:ENST00000497075.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	2.25579	2.94131	3.62683	0.00934624	6.18968e-4	0.0589275	0.00822794
chr16	22534320	22534418	15591469	0	+	0.55102	(0.53,0.59]	chr16	1236299	7	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	33	2	2.87264	2.9412700000000003	3.0099	0.00600486	0.00168899	0.042887	0.0175515
chr2	74528842	74528935	2743306	0	-	0.569892	(0.53,0.59]	chr2	244614	2	CDS	CDS:EXON_MRNA	AUP1	ENSG00000115307.17	ENST00000425118.5:ENST00000377526.4:ENST00000463900.5:ENST00000466894.5:ENST00000464887.1:ENST00000472800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.27113	2.94123	3.61133	0.0178853	4.55298e-4	0.0918323	0.00608573
chr22	40825678	40825773	18517880	0	-	0.315789	(0.29,0.33]	chr22	1580937	13	UTR3	UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8	protein_coding	protein_coding	protein_coding	protein_coding	20	93	2	2.24767	2.940995	3.63432	1.13323e-4	3.22834e-7	0.00201142	1.70798e-5
chr10	96521075	96521174	11640089	0	-	0.373737	(0.36,0.39]	chr10	886559	31	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	82	2	2.77925	2.940975	3.1027	3.2152e-5	7.12624e-6	7.12885e-4	2.28435e-4
chr12	108648962	108649020	13530516	0	-	0.362069	(0.36,0.39]	chr12	1063941	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000549387.1:ENST00000552030.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.85784	2.940905	3.02397	0.00674398	0.00191736	0.0461258	0.0183299
chr16	2253700	2253798	15825202	0	-	0.5	(0.49,0.53]	chr16	1262340	7	UTR3	UTR3:EXON_MRNA	RNPS1	ENSG00000205937.12	ENST00000397086.6:ENST00000566458.5:ENST00000320225.10:ENST00000562205.1:ENST00000566397.5:ENST00000565678.5:ENST00000561718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	59	2	2.73196	2.940855	3.14975	3.65807e-4	8.97896e-5	0.0054989	0.0016645
chr5	78002805	78002901	6651875	0	-	0.4375	(0.42,0.455]	chr5	513893	6	UTR3	UTR3:EXON_MRNA	AP3B1	ENSG00000132842.14	ENST00000255194.11:ENST00000519295.5:ENST00000522901.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.91373	2.940805	2.96788	0.00892357	0.00109784	0.0567495	0.0119666
chr1	160358562	160358660	496818	0	+	0.571429	(0.53,0.59]	chr1	53515	4	UTR3	UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.86102	2.94078	3.02054	0.00577011	0.0017805	0.0426551	0.0172974
chr5	138182585	138182679	6243523	0	+	0.553191	(0.53,0.59]	chr5	486337	1	CDS	CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5:ENST00000504621.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.05734	2.940705	3.82407	0.0179666	0.0167029	0.0918323	0.0883198
chr7	143304971	143305071	8581133	0	+	0.57	(0.53,0.59]	chr7	655692	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000350623.7:ENST00000493642.5:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.05734	2.940705	3.82407	0.0179666	0.0167029	0.0918323	0.0883198
chr19	810542	810620	17189578	0	+	0.538462	(0.53,0.59]	chr19	1411051	1	CDS	CDS:UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	102	2	2.48428	2.940665	3.39705	1.10308e-4	5.60849e-5	0.00211768	0.00113242
chr20	32849911	32850010	17755872	0	+	0.333333	(0.33,0.36]	chr20	1498956	13	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	16	99	2	2.41339	2.9406600000000003	3.46793	2.4818e-4	1.10998e-7	0.00406956	6.11678e-6
chr9	94459699	94459795	10367793	0	+	0.447917	(0.42,0.455]	chr9	780591	4	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.33282	2.9406	3.54838	0.00677333	5.9986e-4	0.0462932	0.0075062
chr1	112912819	112912916	1232304	0	-	0.350515	(0.33,0.36]	chr1	120455	11	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	2.68221	2.9404649999999997	3.19872	1.8131e-4	6.97647e-5	0.00316116	0.00134581
chrX	72272580	72272670	19107956	0	-	0.366667	(0.36,0.39]	chrX	1625629	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS4X	ENSG00000198034.11	ENST00000470671.1:ENST00000492695.1:ENST00000316084.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	99	2	2.27411	2.9404399999999997	3.60677	0.00289952	3.1599e-8	0.0258199	2.08636e-6
chr1	149923466	149923541	1287286	0	-	0.373333	(0.36,0.39]	chr1	127930	3	UTR3	UTR3:EXON_MRNA	SF3B4	ENSG00000143368.10	ENST00000271628.9	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.78505	2.94035	4.09565	0.0228572	2.81403e-5	0.108215	6.42183e-4
chr10	84148729	84148783	11164583	0	+	0.5	(0.49,0.53]	chr10	848145	1	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	2.58241	2.94033	3.29825	2.10975e-4	0.00019429700000000001	0.00332542	0.00328171
chr6	106970121	106970218	7876573	0	-	0.402062	(0.39,0.42]	chr6	603137	4	UTR3	UTR3:EXON_MRNA	CD24	ENSG00000272398.6	ENST00000619133.4:ENST00000606017.2	protein_coding	protein_coding	protein_coding	protein_coding	10	65	2	2.22589	2.94018	3.65447	0.00108267	3.0613e-6	0.0118375	1.13887e-4
chr17	48542901	48542984	16577776	0	-	0.301205	(0.29,0.33]	chr17	1361781	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HOXB2	ENSG00000173917.11	ENST00000504772.3:ENST00000330070.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.9319	2.94017	2.94844	0.00217122	0.00145571	0.0208941	0.0148357
chr1	151068374	151068471	469983	0	+	0.371134	(0.36,0.39]	chr1	47855	10	UTR3	UTR3:EXON_MRNA	MLLT11	ENSG00000213190.4	ENST00000368921.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.38564	2.940025	3.49441	0.0476159	7.81559e-4	0.17993	0.00927662
chr14	51249518	51249569	14278801	0	+	0.372549	(0.36,0.39]	chr14	1116413	2	CDS	CDS:UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.38564	2.940025	3.49441	0.0476159	7.81559e-4	0.17993	0.00927662
chr6	31640644	31640704	7661383	0	-	0.566667	(0.53,0.59]	chr6	584810	1	CDS	CDS:UTR3:EXON_MRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000422948.5:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.26097	2.939765	3.61856	0.0303021	0.00389622	0.129773	0.0313006
chr11	74253808	74253907	12016981	0	+	0.50505	(0.49,0.53]	chr11	926524	4	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	2.70962	2.93974	3.16986	3.95698e-4	1.8355e-4	0.00587341	0.00296537
chr4	165341946	165342039	5206956	0	+	0.365591	(0.36,0.39]	chr4	420285	1	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	1.85874	2.93958	4.02042	0.0415243	1.39717e-7	0.164804	7.45332e-6
chr19	55674623	55674716	17397362	0	+	0.419355	(0.39,0.42]	chr19	1448950	7	UTR3	UTR3:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.93908	2.93952	3.93996	0.0154765	0.00841622	0.0836906	0.054565
chr17	22523414	22523506	16169251	0	+	0.423913	(0.42,0.455]	chr17	1304367	1	UTR5	UTR5:EXON_MRNA	MTRNR2L1	ENSG00000256618.3	ENST00000540040.3	protein_coding	protein_coding	protein_coding	protein_coding	33	225	2	2.74305	2.9394150000000003	3.13578	6.42896e-7	1.84752e-7	3.04844e-5	9.51248e-6
chr21	32268316	32268406	18213034	0	-	0.4	(0.39,0.42]	chr21	1545409	2	UTR3	UTR3:EXON_MRNA	MIS18A	ENSG00000159055.4	ENST00000290130.4	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.68267	2.939275	3.19588	0.00321212	0.00125229	0.0280721	0.0133064
chr1	27406604	27406703	908769	0	-	0.40404	(0.39,0.42]	chr1	95011	25	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	2.75619	2.939265	3.12234	1.38708e-4	1.28898e-4	0.0024153	0.00235122
chr12	119681224	119681324	13114524	0	+	0.5	(0.49,0.53]	chr12	1023559	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	40	2	2.38683	2.9391299999999996	3.49143	0.012654	6.13943e-5	0.0718207	0.00122382
chr12	1788288	1788384	12689034	0	+	0.53125	(0.53,0.59]	chr12	984486	24	UTR3	UTR3:EXON_MRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.2596	2.9390799999999997	3.61856	0.0303021	0.0185443	0.129773	0.0948733
chr14	22946524	22946624	14528004	0	-	0.55	(0.53,0.59]	chr14	1138196	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HAUS4:RP11-298I3.5	ENSG00000092036.19:ENSG00000259132.1	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000554446.5:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555074.1:ENST00000555986.5:ENST00000556421.5:ENST00000553859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.2596	2.9390799999999997	3.61856	0.0303021	0.0185443	0.129773	0.0948733
chr2	27036704	27036786	1690622	0	+	0.573171	(0.53,0.59]	chr2	165327	1	CDS	CDS:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000475258.5:ENST00000425720.5:ENST00000460904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.2596	2.9390799999999997	3.61856	0.0303021	0.0185443	0.129773	0.0948733
chr10	7799843	7799915	10915978	0	+	0.319444	(0.29,0.33]	chr10	831329	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	59	2	2.60688	2.9389950000000002	3.27111	6.9259e-4	3.77905e-6	0.00876781	1.22746e-4
chr6	30724297	30724397	7112221	0	+	0.56	(0.53,0.59]	chr6	545066	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	52	473	2	2.78209	2.9389700000000003	3.09585	6.51869e-7	1.60456e-8	3.08344e-5	1.16431e-6
chr5	115613708	115613808	6776983	0	-	0.32	(0.29,0.33]	chr5	519913	6	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	2.92949	2.938965	2.94844	0.00217122	3.73367e-4	0.0208941	0.00519568
chr15	43793872	43793972	14896754	0	+	0.64	(0.59,1]	chr15	1171351	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERF2	ENSG00000140264.21	ENST00000381359.5:ENST00000630046.2:ENST00000249786.9:ENST00000409646.5:ENST00000409960.6:ENST00000486144.1:ENST00000445816.5:ENST00000409291.5:ENST00000339624.9:ENST00000409617.6:ENST00000448830.2:ENST00000403425.5:ENST00000402131.5:ENST00000430901.1:ENST00000409614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	496	2	2.69219	2.93888	3.18557	8.73139e-6	1.41742e-6	0.00024628300000000003	5.8894e-5
chr2	47803507	47803596	1788239	0	+	0.359551	(0.33,0.36]	chr2	172674	2	CDS	CDS:UTR3:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	2.62574	2.938785	3.25183	0.00176861	3.87102e-4	0.0172426	0.00578322
chr8	47858515	47858575	9816361	0	-	0.35	(0.33,0.36]	chr8	742671	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.62574	2.938785	3.25183	0.00176861	3.87102e-4	0.0172426	0.00578322
chr20	63890323	63890417	17866828	0	+	0.457447	(0.455,0.49]	chr20	1511295	4	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	47	2	2.33278	2.938695	3.54461	0.00314029	4.40117e-5	0.0276877	9.24938e-4
chr1	212361459	212361557	702769	0	+	0.520408	(0.49,0.53]	chr1	71311	8	UTR3	UTR3:EXON_MRNA	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.19229	2.93864	3.68499	0.00311904	2.9991e-4	0.0264364	0.00472028
chr15	59114443	59114528	14959889	0	+	0.494118	(0.49,0.53]	chr15	1175690	1	CDS	CDS:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000561077.1:ENST00000288207.7:ENST00000559622.5:ENST00000621385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	61	2	1.99044	2.9385399999999997	3.88664	0.0435903	4.62391e-7	0.170594	2.06661e-5
chr12	69269811	69269910	12941698	0	+	0.252525	[0,0.29]	chr12	1008771	4	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.3458	2.93846	3.53112	0.0116272	5.30932e-5	0.0685835	0.00108035
chr19	34469414	34469511	17301281	0	+	0.340206	(0.33,0.36]	chr19	1430051	3	UTR3	UTR3:EXON_MRNA	UBA2	ENSG00000126261.13	ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.05144	2.93841	3.82538	0.00903135	1.40963e-4	0.0573114	0.002378
chr6	159779894	159779990	8049066	0	-	0.479167	(0.455,0.49]	chr6	615257	1	CDS	CDS:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000546204.1:ENST00000539756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	84	2	2.89761	2.9383999999999997	2.97919	8.43808e-5	1.34828e-5	0.00173269	3.52722e-4
chr16	28711416	28711506	15619068	0	+	0.644444	(0.59,1]	chr16	1238238	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000569690.5:ENST00000331666.11:ENST00000564243.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	53	2	2.76006	2.9382650000000003	3.11647	0.00535979	0.00330486	0.0406564	0.027613
chr19	6531036	6531136	17213485	0	+	0.73	(0.59,1]	chr19	1415909	1	CDS_START	CDS_START:CDS:EXON_MRNA	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.38614	2.9381700000000004	3.4902	0.0128707	0.00130379	0.0725185	0.0142445
chr12	49764254	49764351	12869285	0	+	0.463918	(0.455,0.49]	chr12	999645	15	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.78188	2.938165	3.09445	7.46087e-4	6.1765e-4	0.00892618	0.00822794
chr7	75422505	75422604	8858978	0	-	0.555556	(0.53,0.59]	chr7	676969	11	CDS	CDS:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.05734	2.9380699999999997	3.8188	0.0167029	1.54941e-4	0.0883198	0.0028049
chr19	58547654	58547713	17413320	0	+	0.542373	(0.53,0.59]	chr19	1451189	2	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000594806.5:ENST00000341753.10:ENST00000597618.5:ENST00000597423.1:ENST00000597172.5:ENST00000601150.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	2.56665	2.93804	3.30943	0.00209536	0.0018255	0.0196588	0.0183913
chr7	137722367	137722462	8560988	0	+	0.557895	(0.53,0.59]	chr7	653090	5	EXON_PSEUDO	EXON_PSEUDO	AC009245.3	ENSG00000230383.1	ENST00000456481.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	43	2	2.63316	2.93783	3.2425	0.00474401	2.6381e-4	0.0361423	0.00427022
chr11	5345772	5345835	12241553	0	-	0.428571	(0.42,0.455]	chr11	946170	1	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	13	109	2	2.22242	2.93773	3.65304	0.001203	5.68263e-8	0.0134762	3.43245e-6
chr13	45341041	45341069	14005973	0	-	0.5	(0.49,0.53]	chr13	1098105	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000490277.1:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	128	2	2.90551	2.93736	2.96921	1.26547e-5	2.71959e-6	3.6681e-4	9.3314e-5
chr17	39408557	39408655	16535847	0	-	0.520408	(0.49,0.53]	chr17	1354013	11	CDS	CDS:UTR3:EXON_MRNA:INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.72252	2.9372949999999998	3.15207	0.0161474	0.00347189	0.0860154	0.0286293
chr17	49827799	49827898	16260197	0	+	0.525253	(0.49,0.53]	chr17	1318079	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000510819.5:ENST00000424009.6:ENST00000435742.2:ENST00000513980.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.72252	2.9372949999999998	3.15207	0.0161474	0.00347189	0.0860154	0.0286293
chr2	27232529	27232611	1691652	0	+	0.512195	(0.49,0.53]	chr2	165715	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000464159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.72252	2.9372949999999998	3.15207	0.0161474	0.00347189	0.0860154	0.0286293
chr11	47806232	47806312	12389631	0	-	0.375	(0.36,0.39]	chr11	957473	2	CDS	CDS:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000526569.1:ENST00000527750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.54205	2.93723	3.33241	0.00253891	0.00193631	0.0227257	0.0192272
chrX	65740766	65740863	18716373	0	+	0.474227	(0.455,0.49]	chrX	1596885	10	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	11	76	2	2.35834	2.93723	3.51612	3.329e-4	7.83131e-6	0.00472923	2.45497e-4
chr8	100718086	100718160	9976101	0	-	0.324324	(0.29,0.33]	chr8	752700	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2:ENST00000518196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	48	278	2	2.48053	2.93705	3.39357	7.62982e-6	3.88048e-10	2.41501e-4	4.5324e-8
chr7	141653117	141653214	8575265	0	+	0.453608	(0.42,0.455]	chr7	654204	3	UTR3	UTR3:EXON_MRNA	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000649286.2:ENST00000649790.1:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	2.90616	2.93702	2.96788	0.00162359	0.00109784	0.0169915	0.0119666
chr12	53452101	53452192	12886442	0	+	0.835165	(0.59,1]	chr12	1002395	1	UTR5	UTR5:EXON_MRNA:INTRON	RP11-793H13.8:PCBP2	ENSG00000257379.1:ENSG00000197111.16	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000550520.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	76	2	2.30623	2.9368999999999996	3.56757	0.0170607	7.48524e-5	0.0896731	0.00142695
chr17	40818375	40818428	16540435	0	-	0.320755	(0.29,0.33]	chr17	1355162	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	KRT10	ENSG00000186395.9	ENST00000269576.6:ENST00000635956.2	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	2.79168	2.9366849999999998	3.08169	0.00114594	1.21553e-4	0.0130468	0.00211341
chr12	54340504	54340604	12892045	0	+	0.47	(0.455,0.49]	chr12	1002975	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-968A15.8:COPZ1	ENSG00000258344.1:ENSG00000111481.10	ENST00000553061.1:ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1:ENST00000550713.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	4	32	2	2.51261	2.9365550000000002	3.3605	0.00280343	0.00147278	0.0242354	0.0157578
chr14	100346745	100346795	14788630	0	-	0.48	(0.455,0.49]	chr14	1158718	1	CDS	CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000554601.1:ENST00000553395.5:ENST00000556504.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.51261	2.9365550000000002	3.3605	0.00280343	0.00147278	0.0242354	0.0157578
chr15	41718444	41718520	15235659	0	-	0.381579	(0.36,0.39]	chr15	1199372	2	EXON_PSEUDO	EXON_PSEUDO	RP11-107F6.4	ENSG00000270702.1	ENST00000605661.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	29	2	2.6711	2.93654	3.20198	0.00434596	4.4092e-4	0.0335517	0.0062930699999999996
chr11	119044927	119045020	12626412	0	-	0.505376	(0.49,0.53]	chr11	979738	9	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.72252	2.93648	3.15044	0.0161474	4.32676e-4	0.0860154	0.00583708
chr1	23787946	23788041	98993	0	+	0.526316	(0.49,0.53]	chr1	11526	7	UTR3	UTR3:EXON_MRNA	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000374524.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.26641	2.93647	3.60653	0.0190546	4.50981e-4	0.093872	0.00605268
chr7	103367712	103367809	8441712	0	+	0.42268	(0.42,0.455]	chr7	645120	1	CDS	CDS:UTR3:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	61	2	2.36466	2.936455	3.50825	4.81186e-4	5.86898e-5	0.00631426	0.00129243
chr15	48879695	48879790	14921721	0	+	0.389474	(0.36,0.39]	chr15	1173117	11	UTR3	UTR3:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.28639	2.9363799999999998	3.58637	0.00768469	5.84377e-4	0.050396	0.00793559
chr4	173321717	173321814	5233740	0	+	0.340206	(0.33,0.36]	chr4	421244	1	UTR3	UTR3:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000515862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	2.54998	2.9363400000000004	3.3227	0.00222616	0.00106635	0.0211992	0.0118238
chr19	48383202	48383292	17601668	0	-	0.622222	(0.59,1]	chr19	1482708	8	UTR3	UTR3:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	4	63	2	2.24689	2.935855	3.62482	0.00890458	7.40647e-4	0.0565003	0.00925967
chr17	63585269	63585328	16317505	0	+	0.542373	(0.53,0.59]	chr17	1323663	2	CDS	CDS:EXON_MRNA	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	50	2	2.68432	2.935695	3.18707	0.00118971	3.55681e-4	0.0128045	0.00539248
chr1	228457620	228457717	1539744	0	-	0.670103	(0.59,1]	chr1	154185	2	CDS	CDS:EXON_MRNA	H2AW	ENSG00000181218.5	ENST00000366695.3	protein_coding	protein_coding	protein_coding	protein_coding	9	139	2	2.58699	2.9356850000000003	3.28438	3.42382e-4	8.33662e-5	0.00482513	0.00171506
chr9	131258271	131258369	10870339	0	-	0.642857	(0.59,1]	chr9	824566	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	70	2	2.89474	2.935635	2.97653	0.00190546	0.00142722	0.018313	0.0153442
chr11	61404016	61404114	12404526	0	-	0.540816	(0.53,0.59]	chr11	960350	15	UTR3	UTR3:EXON_MRNA	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8	protein_coding	protein_coding	protein_coding	protein_coding	4	42	2	2.92962	2.935435	2.94125	0.0012954	0.0012261800000000001	0.0136936	0.0135648
chr9	125149572	125149672	10855778	0	-	0.44	(0.42,0.455]	chr9	822322	31	UTR3	UTR3:EXON_MRNA	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.81175	2.93532	3.05889	0.00524205	0.00227654	0.0399155	0.0209546
chr4	87047118	87047213	4940215	0	+	0.515789	(0.49,0.53]	chr4	405698	4	CDS	CDS:EXON_MRNA:INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	2.72712	2.93513	3.14314	9.78408e-4	9.45216e-5	0.0109424	0.00188394
chr2	9588164	9588246	2508198	0	-	0.439024	(0.42,0.455]	chr2	226362	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	71	2	2.63157	2.93498	3.23839	2.92986e-4	5.48327e-5	0.00464297	0.00111325
chr4	120060217	120060290	5621465	0	-	0.39726	(0.39,0.42]	chr4	448081	1	CDS	CDS:UTR3:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9:ENST00000504707.1:ENST00000512484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.54172	2.934915	3.32811	0.00247353	0.00182819	0.0223024	0.0183913
chr7	32868659	32868757	8759793	0	-	0.397959	(0.39,0.42]	chr7	668168	6	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.11	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.54172	2.934915	3.32811	0.00247353	0.00182819	0.0223024	0.0183913
chr12	48096342	48096427	13319606	0	-	0.388235	(0.36,0.39]	chr12	1044683	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5:ENST00000547886.5:ENST00000551592.5:ENST00000551798.1:ENST00000547181.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	2.32678	2.93451	3.54224	0.0193538	4.51643e-5	0.0943643	9.43703e-4
chr2	96277080	96277160	2790275	0	-	0.475	(0.455,0.49]	chr2	248695	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	47	2	2.69828	2.9344200000000003	3.17056	4.39828e-4	4.1243e-4	0.00604953	0.00592532
chr9	73160319	73160376	10304685	0	+	0.473684	(0.455,0.49]	chr9	776024	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000415424.5:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	2.69828	2.9344200000000003	3.17056	4.39828e-4	4.1243e-4	0.00604953	0.00592532
chr5	36961483	36961583	5935576	0	+	0.41	(0.39,0.42]	chr5	465400	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000505998.5:ENST00000504430.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	50	2	2.62301	2.934315	3.24562	6.74579e-4	5.84121e-5	0.00826103	0.00129108
chr1	50738862	50738954	1010963	0	-	0.423913	(0.42,0.455]	chr1	104780	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	83	2	2.86607	2.93426	3.00245	7.49627e-5	1.71234e-5	0.00157538	4.319e-4
chr12	884648	884743	12681416	0	+	0.494737	(0.49,0.53]	chr12	984118	1	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1:ENST00000534872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	54	2	1.94299	2.934135	3.92528	0.0152714	3.34795e-6	0.0828908	1.10631e-4
chr1	149843069	149843166	464820	0	+	0.556701	(0.53,0.59]	chr1	46801	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	H2BC19P	ENSG00000220323.4	ENST00000608318.2:ENST00000369385.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	42	2	2.87264	2.933875	2.99511	0.00168899	9.46531e-4	0.0175515	0.010681
chr19	58547596	58547654	17413319	0	+	0.568965	(0.53,0.59]	chr19	1451189	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10:ENST00000597618.5:ENST00000597423.1:ENST00000597172.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.87264	2.933875	2.99511	0.00168899	9.46531e-4	0.0175515	0.010681
chr11	903013	903065	12228658	0	-	0.576923	(0.53,0.59]	chr11	943988	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5:ENST00000533056.5:ENST00000533059.5:ENST00000530939.5:ENST00000525225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	25	2	2.65894	2.93384	3.20874	0.0193255	0.00278422	0.0943643	0.0241009
chr3	40457471	40457530	3429564	0	+	0.745763	(0.59,1]	chr3	298303	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000465325.1:ENST00000396203.7:ENST00000416518.1:ENST00000435633.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	26	2	1.88006	2.933785	3.98751	0.0554008	0.0301044	0.191173	0.129773
chr18	9954407	9954506	16756134	0	+	0.30303	(0.29,0.33]	chr18	1381801	3	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	88	2	2.76647	2.93358	3.10069	1.33102e-5	2.67738e-6	3.48915e-4	1.00963e-4
chr2	61492034	61492116	2690493	0	-	0.341463	(0.33,0.36]	chr2	240363	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	91	2	1.89429	2.93345	3.97261	0.00643718	7.29636e-9	0.0452349	5.92268e-7
chr20	32166685	32166780	17752647	0	+	0.505263	(0.49,0.53]	chr20	1498541	14	UTR3	UTR3:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9:ENST00000495749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.8681	2.933295	2.99849	0.00630123	0.00175299	0.0445415	0.0171299
chr3	129272806	129272904	3730584	0	+	0.510204	(0.49,0.53]	chr3	318964	1	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5:ENST00000514478.1:ENST00000512034.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.8681	2.933295	2.99849	0.00630123	0.00175299	0.0445415	0.0171299
chr3	150562541	150562600	3807735	0	+	0.440678	(0.42,0.455]	chr3	324991	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000474505.5:ENST00000460851.6:ENST00000406576.7:ENST00000482093.5:ENST00000469331.1:ENST00000273435.9:ENST00000490505.5:ENST00000462221.5:ENST00000477551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.55474	2.933175	3.31161	0.00228741	0.00186138	0.0210026	0.018635
chr7	150951020	150951120	9128666	0	-	0.62	(0.59,1]	chr7	697472	2	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2:ENST00000683359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.53147	2.9330600000000002	3.33465	0.00807544	2.51362e-4	0.0531324	0.00379143
chrX	74409614	74409711	18741845	0	+	0.474227	(0.455,0.49]	chrX	1599392	2	EXON_PSEUDO	EXON_PSEUDO	RPS7P14	ENSG00000213695.3	ENST00000426405.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	46	2	2.53963	2.933	3.32637	0.00112063	1.64563e-4	0.0128408	0.00269001
chr1	6223982	6224082	842572	0	-	0.33	(0.29,0.33]	chr1	84936	29	UTR3	UTR3:EXON_MRNA	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	2.24226	2.93269	3.62312	0.0306054	0.0222826	0.130226	0.104593
chr21	39181771	39181824	18255602	0	-	0.320755	(0.29,0.33]	chr21	1547897	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMG1	ENSG00000183527.12	ENST00000331573.8:ENST00000411828.5:ENST00000380900.2:ENST00000431628.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	2.24226	2.93269	3.62312	0.0306054	0.0222826	0.130226	0.104593
chr3	13365945	13366018	4046714	0	-	0.575342	(0.53,0.59]	chr3	339654	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	96	2	1.94437	2.93269	3.92101	0.0143432	7.43199e-8	0.0783202	4.33231e-6
chr4	342891	342962	5274408	0	-	0.422535	(0.42,0.455]	chr4	424132	2	EXON_PSEUDO	EXON_PSEUDO	RP11-478C6.4	ENSG00000250321.1	ENST00000506193.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	31	2	2.24157	2.93236	3.62315	0.0087798	4.234e-4	0.0562439	0.00613535
chr5	43494793	43494886	6561267	0	-	0.258065	[0,0.29]	chr5	508492	2	SS3_PROX	SS3_PROX:INTRON	C5orf34	ENSG00000172244.9	ENST00000306862.7:ENST00000503655.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	100	2	2.4611	2.93216	3.40322	0.00109649	2.75341e-8	0.0126535	1.85734e-6
chr6	53268826	53268921	7740170	0	-	0.4	(0.39,0.42]	chr6	594337	16	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	20	158	2	2.63658	2.9318	3.22702	1.80697e-4	3.72917e-8	0.00315126	2.40133e-6
chr1	53767071	53767171	1025557	0	-	0.36	(0.33,0.36]	chr1	106347	17	UTR3	UTR3:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.28792	2.931755	3.57559	0.0262108	0.0239159	0.117079	0.112531
chr3	47916326	47916420	4164422	0	-	0.553191	(0.53,0.59]	chr3	348579	5	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.73974	2.93157	3.1234	0.00390623	9.00802e-4	0.0322851	0.0102618
chr16	70556256	70556334	15730003	0	+	0.589744	(0.53,0.59]	chr16	1252965	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567250.5:ENST00000568291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	2.80515	2.93145	3.05775	6.94592e-4	6.42453e-4	0.00850441	0.00846751
chr1	35603069	35603167	938334	0	-	0.397959	(0.39,0.42]	chr1	98692	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.01081	2.9314400000000003	3.85207	0.0207537	1.28587e-4	0.100574	0.00241206
chr2	38748578	38748653	2605187	0	-	0.573333	(0.53,0.59]	chr2	234687	1	CDS	CDS:UTR3:EXON_MRNA	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	99	2	2.46269	2.93103	3.39937	7.66631e-4	1.5212e-6	0.00915627	6.26453e-5
chr3	180970224	180970291	3933679	0	+	0.522388	(0.49,0.53]	chr3	330736	2	CDS	CDS:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000476672.1:ENST00000482125.1:ENST00000481383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	2.6922	2.93103	3.16986	4.50155e-4	3.95698e-4	0.00605268	0.00587341
chr7	133034606	133034690	9078001	0	-	0.535714	(0.53,0.59]	chr7	693065	1	EXON_PSEUDO	EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	protein_coding	miRNA:protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	10	99	2	2.4751	2.9310099999999997	3.38692	7.16255e-4	1.69432e-6	0.00901405	6.22293e-5
chr12	56597447	56597544	13351656	0	-	0.360825	(0.36,0.39]	chr12	1051592	20	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	2.63702	2.93094	3.22486	0.00212882	5.21107e-6	0.0206577	1.60138e-4
chr6	31829680	31829776	7116704	0	+	0.583333	(0.53,0.59]	chr6	546209	18	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	11	97	2	1.8853	2.93092	3.97654	0.00442316	2.59045e-7	0.034414	1.26294e-5
chr19	34443843	34443911	17301012	0	+	0.5	(0.49,0.53]	chr19	1429989	1	CDS	CDS:UTR3:EXON_MRNA	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.12684	2.9308899999999998	3.73494	0.0189345	0.0134683	0.0934721	0.0744999
chr2	15308215	15308284	2527540	0	-	0.507246	(0.49,0.53]	chr2	227351	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.12684	2.9308899999999998	3.73494	0.0189345	0.0134683	0.0934721	0.0744999
chr4	109822346	109822417	5041300	0	+	0.464789	(0.455,0.49]	chr4	410141	1	CDS	CDS:EXON_MRNA	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5:ENST00000226796.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	41	2	2.53523	2.9307999999999996	3.32637	0.00270505	1.64563e-4	0.0243939	0.00269001
chr1	22092014	22092113	93084	0	+	0.474747	(0.455,0.49]	chr1	10799	6	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.40508	2.93067	3.45626	0.0022198	1.18079e-5	0.0211918	3.14877e-4
chr11	126263817	126263915	12645142	0	-	0.489796	(0.455,0.49]	chr11	981826	10	UTR3	UTR3:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000532268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	89	2	2.72051	2.9305950000000003	3.14068	4.13074e-4	2.02717e-6	0.00605644	7.23966e-5
chr8	70583721	70583793	9881375	0	-	0.375	(0.36,0.39]	chr8	746922	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	53	2	2.79394	2.9305950000000003	3.06725	2.06648e-4	1.10976e-4	0.00350209	0.00197469
chr11	65351855	65351951	11984140	0	+	0.625	(0.59,1]	chr11	920300	2	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.03921	2.930495	3.82178	0.0371471	2.76767e-4	0.151849	0.00409634
chr19	40623935	40624008	17330481	0	+	0.60274	(0.59,1]	chr19	1436054	1	CDS	CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000601032.5:ENST00000599724.5:ENST00000595118.5:ENST00000318809.11:ENST00000597816.5:ENST00000622457.1:ENST00000594116.1:ENST00000597151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	55	2	2.03921	2.930495	3.82178	0.0371471	2.76767e-4	0.151849	0.00409634
chrX	49174964	49175054	18693794	0	+	0.533333	(0.53,0.59]	chrX	1594681	4	UTR3	UTR3:EXON_MRNA	PLP2	ENSG00000102007.11	ENST00000376327.6	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.37399	2.930395	3.4868	0.0126178	1.01599e-5	0.0717599	2.80762e-4
chr5	166382402	166382500	6357345	0	+	0.571429	(0.53,0.59]	chr5	494315	2	EXON_PSEUDO	EXON_PSEUDO	CTB-63M22.1	ENSG00000229119.3	ENST00000518938.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	36	303	2	2.37573	2.930245	3.48476	1.53373e-5	9.9078e-9	3.9172e-4	8.44338e-7
chr1	161440179	161440279	1333597	0	-	0.71	(0.59,1]	chr1	136934	59	INTRON	INTRON	RP11-122G18.10:RP11-122G18.11	ENSG00000283360.1:ENSG00000283317.1	ENST00000637155.1:ENST00000636824.1	lncRNA	lncRNA	lncRNA	lncRNA	2	40	2	2.61074	2.93023	3.24972	0.025486	0.00314037	0.117089	0.0264943
chr16	30737743	30737843	15631215	0	+	0.5	(0.49,0.53]	chr16	1240563	8	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.78308	2.930135	4.07719	0.0425234	0.0074411	0.167547	0.0492519
chr2	187464808	187464905	3070147	0	-	0.247423	[0,0.29]	chr2	271827	7	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.89477	2.9300499999999996	2.96533	0.0024246	0.00179424	0.0227938	0.0174091
chr16	30723140	30723229	15631056	0	+	0.595506	(0.59,1]	chr16	1240521	3	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.68392	2.93004	3.17616	0.0202468	0.00434232	0.0984041	0.0339139
chr19	5896502	5896576	17437910	0	-	0.689189	(0.59,1]	chr19	1456266	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AC024592.12:NDUFA11	ENSG00000267740.5:ENSG00000174886.14	ENST00000592091.5:ENST00000586349.5:ENST00000585661.1:ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000591341.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.68392	2.93004	3.17616	0.0202468	0.00434232	0.0984041	0.0339139
chr4	144110556	144110653	5696542	0	-	0.340206	(0.33,0.36]	chr4	451524	14	UTR3	UTR3:EXON_MRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8	protein_coding	protein_coding	protein_coding	protein_coding	10	67	2	2.42919	2.92998	3.43077	0.00151039	1.00392e-6	0.0160934	4.0056e-5
chr10	92654695	92654795	11192290	0	+	0.4	(0.39,0.42]	chr10	851111	10	UTR3	UTR3:EXON_MRNA	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.34349	2.929925	3.51636	0.0169272	6.99837e-4	0.0890655	0.00846751
chr6	143427078	143427177	8004983	0	-	0.393939	(0.39,0.42]	chr6	611698	44	UTR3	UTR3:EXON_MRNA	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.34349	2.929925	3.51636	0.0169272	6.99837e-4	0.0890655	0.00846751
chr5	41921041	41921140	5952067	0	+	0.353535	(0.33,0.36]	chr5	466512	24	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.53712	2.92991	3.3227	0.00766322	0.00222616	0.0503696	0.0211992
chr6	41936681	41936695	7701879	0	-	0.357143	(0.33,0.36]	chr6	590680	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5:ENST00000511686.5:ENST00000512426.5:ENST00000513956.5:ENST00000506555.5:ENST00000508143.5:ENST00000505064.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.53712	2.92991	3.3227	0.00766322	0.00222616	0.0503696	0.0211992
chr1	32033187	32033260	125756	0	+	0.479452	(0.455,0.49]	chr1	15436	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	47	2	2.69053	2.9299	3.16927	0.0182983	2.24921e-5	0.0925808	5.35456e-4
chr7	121266299	121266373	8496527	0	+	0.405405	(0.39,0.42]	chr7	648429	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	1.59111	2.92964	4.26817	0.0242602	1.62598e-8	0.114087	1.17863e-6
chr15	78500966	78501063	15040161	0	+	0.350515	(0.33,0.36]	chr15	1183144	30	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.6995	2.92963	3.15976	0.017838	0.00437542	0.0934844	0.0340502
chr2	161391103	161391178	2165192	0	+	0.32	(0.29,0.33]	chr2	199391	1	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000477232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.45373	2.9296100000000003	3.40549	0.0156405	1.12275e-4	0.084273700000000007	0.00199494
chr11	66626483	66626568	11991354	0	+	0.588235	(0.53,0.59]	chr11	922185	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	2.23705	2.929545	3.62204	0.00245055	4.3021e-4	0.0221427	0.00620274
chrX	150767634	150767733	19265123	0	-	0.545455	(0.53,0.59]	chrX	1636624	14	UTR3	UTR3:EXON_MRNA	CD99L2	ENSG00000102181.21	ENST00000370377.8:ENST00000346693.8:ENST00000613030.4:ENST00000437787.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.0404	2.929395	3.81839	0.0362529	0.0184435	0.148525	0.0945306
chrX	120077473	120077552	19194115	0	-	0.556962	(0.53,0.59]	chrX	1631807	1	CDS_START	CDS_START:CDS:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.56002	2.929385	3.29875	0.00634904	0.00191422	0.0446708	0.018324
chr12	56598422	56598519	13351666	0	-	0.505155	(0.49,0.53]	chr12	1051592	30	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	1.57891	2.92926	4.27961	0.0281303	9.03426e-6	0.126918	2.53429e-4
chr6	27147128	27147228	7104164	0	+	0.66	(0.59,1]	chr6	543292	1	CDS_START	CDS_START:CDS:EXON_MRNA:PRIMIRNA	H2AC12:MIR3143	ENSG00000274997.2:ENSG00000265565.1	ENST00000377459.3:ENST00000584253.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	11	205	2	2.44372	2.9290399999999996	3.41436	0.00204199	1.64262e-6	0.0192784	6.68677e-5
chr1	180885939	180886038	586625	0	+	0.30303	(0.29,0.33]	chr1	60742	20	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.92065	2.92901	2.93737	0.0117842	0.00826984	0.0686664	0.0534766
chr18	13746278	13746337	16770042	0	+	0.322034	(0.29,0.33]	chr18	1383283	2	CDS	CDS:EXON_MRNA	RNMT	ENSG00000101654.18	ENST00000543302.6:ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000589866.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.92065	2.92901	2.93737	0.0117842	0.00826984	0.0686664	0.0534766
chr2	152760036	152760134	2139523	0	+	0.306122	(0.29,0.33]	chr2	198151	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000463690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.92065	2.92901	2.93737	0.0117842	0.00826984	0.0686664	0.0534766
chr9	69254930	69255022	10293318	0	+	0.326087	(0.29,0.33]	chr9	775192	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-16N10.2:TJP2	ENSG00000285130.2:ENSG00000119139.21	ENST00000642889.1:ENST00000645088.1:ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000649134.1:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000649927.1:ENST00000498204.2:ENST00000650353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.92065	2.92901	2.93737	0.0117842	0.00826984	0.0686664	0.0534766
chr6	38702970	38703054	7689905	0	-	0.714286	(0.59,1]	chr6	589603	1	CDS_START	CDS_START:CDS:EXON_MRNA	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.92097	2.9289750000000003	2.93698	0.0102634	0.0015925	0.0628742	0.0159023
chr1	46676315	46676412	983399	0	-	0.329897	(0.29,0.33]	chr1	103800	18	UTR3	UTR3:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000481623.2:ENST00000674495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.77585	2.92877	3.08169	0.0143131	0.00114594	0.0780602	0.0130468
chr2	177541756	177541855	2230186	0	+	0.323232	(0.29,0.33]	chr2	203559	37	UTR3	UTR3:EXON_MRNA:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681891.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.77585	2.92877	3.08169	0.0143131	0.00114594	0.0780602	0.0130468
chr1	21851545	21851621	890939	0	-	0.723684	(0.59,1]	chr1	92376	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	84	2	2.4608	2.92865	3.3965	0.00407427	1.83913e-4	0.0324137	0.00296795
chr2	219214120	219214186	3191202	0	-	0.454545	(0.42,0.455]	chr2	280820	1	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000494639.5:ENST00000496984.5:ENST00000492953.5:ENST00000417678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	2.34191	2.928645	3.51538	0.0159091	5.28826e-5	0.0854674	0.00107799
chr6	7288116	7288213	7586874	0	-	0.309278	(0.29,0.33]	chr6	578694	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	1.99403	2.92848	3.86293	0.0202925	5.2702e-6	0.098158	1.61486e-4
chr2	241352239	241352339	2467895	0	+	0.3	(0.29,0.33]	chr2	223257	4	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000451310.1	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	1.99395	2.92844	3.86293	0.0131526	5.2702e-6	0.0733631	1.61486e-4
chr11	46770787	46770884	12383773	0	-	0.42268	(0.42,0.455]	chr11	956088	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.91373	2.9281800000000002	2.94263	0.00892357	0.00766873	0.0567495	0.0503696
chr3	149039048	149039138	4509149	0	-	0.422222	(0.42,0.455]	chr3	374162	1	CDS	CDS:EXON_MRNA	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1:ENST00000472830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.91373	2.9281800000000002	2.94263	0.00892357	0.00766873	0.0567495	0.0503696
chr11	57796545	57796634	11953019	0	+	0.516854	(0.49,0.53]	chr11	914817	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5:ENST00000682814.1:ENST00000681984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.60116	2.92815	3.25514	0.0056515	0.00227467	0.0422191	0.0209546
chr19	15834899	15834994	17246585	0	+	0.368421	(0.36,0.39]	chr19	1422765	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000645389.2:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000644502.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	25	147	2	2.60632	2.92801	3.2497	3.84719e-6	9.31376e-7	1.2488e-4	4.16483e-5
chr4	77055303	77055380	5479244	0	-	0.454545	(0.42,0.455]	chr4	439262	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1:ENST00000506614.1:ENST00000511943.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	92	2	2.62725	2.92798	3.22871	3.69589e-5	1.56448e-5	8.04083e-4	4.38216e-4
chr16	21983202	21983293	15587032	0	+	0.384615	(0.36,0.39]	chr16	1235489	1	UTR3	UTR3:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000561798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	63	2	1.952	2.927855	3.90371	0.00826903	3.75401e-7	0.0542098	1.72944e-5
chr1	67415165	67415252	1079159	0	-	0.724138	(0.59,1]	chr1	110144	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	96	2	2.61897	2.927785	3.2366	9.74438e-4	4.06803e-4	0.0116117	0.00552995
chr6	31643889	31643977	7661424	0	-	0.636364	(0.59,1]	chr6	584834	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000470875.5:ENST00000437771.5:ENST00000465348.5:ENST00000438149.5:ENST00000469182.1:ENST00000453833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	133	2	2.76986	2.927745	3.08563	0.00108867	3.59087e-5	0.0125646	7.85154e-4
chr7	135619422	135619511	8553039	0	+	0.561798	(0.53,0.59]	chr7	652838	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	1.69162	2.9277249999999997	4.16383	0.0342431	0.00659193	0.141233	0.0454205
chr4	99061814	99061913	4999741	0	+	0.424242	(0.42,0.455]	chr4	407952	6	UTR3	UTR3:EXON_MRNA	METAP1	ENSG00000164024.12	ENST00000296411.11:ENST00000514051.1	protein_coding	protein_coding	protein_coding	protein_coding	6	52	2	2.42938	2.9277100000000003	3.42604	0.0045028	1.46189e-5	0.0349711	3.76794e-4
chr6	119348713	119348797	7921026	0	-	0.880952	(0.59,1]	chr6	606539	4	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.11074	2.927605	3.74447	0.0305	2.8028e-5	0.130204	6.41211e-4
chr11	61967325	61967425	12406760	0	-	0.63	(0.59,1]	chr11	960810	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	591	2	2.8204	2.927275	3.03415	9.46604e-6	6.51079e-7	2.90173e-4	2.77961e-5
chr16	58161703	58161801	15965642	0	-	0.489796	(0.455,0.49]	chr16	1280935	23	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	36	2	2.52734	2.9268549999999998	3.32637	0.00792433	1.64563e-4	0.0523592	0.00269001
chr6	132816511	132816563	7406829	0	+	0.442308	(0.42,0.455]	chr6	567796	2	CDS	CDS:EXON_MRNA	RPS12	ENSG00000112306.8	ENST00000230050.4:ENST00000484616.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	156	2	2.58103	2.92681	3.27259	1.40143e-5	2.01772e-7	3.97772e-4	1.02392e-5
chr2	218275277	218275375	3186641	0	-	0.561224	(0.53,0.59]	chr2	279898	12	UTR3	UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.47	2.926735	3.38347	0.0089333	0.00132446	0.0567495	0.0138834
chrX	66198952	66199028	18717610	0	+	0.486842	(0.455,0.49]	chrX	1597002	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	65	2	2.1179	2.92659	3.73528	0.00480128	1.49591e-6	0.0370496	5.62205e-5
chr6	37174091	37174186	7136294	0	+	0.610526	(0.59,1]	chr6	549953	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000468243.5:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	517	2	2.73393	2.9265	3.11907	5.08511e-6	4.21152e-6	1.72202e-4	1.34357e-4
chr1	119712022	119712122	432395	0	+	0.54	(0.53,0.59]	chr1	42719	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641720.1:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000496756.2:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.0289	2.926485	3.82407	0.0373899	0.0179666	0.146698	0.0918323
chr1	206599462	206599537	1464435	0	-	0.546667	(0.53,0.59]	chr1	147987	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	EIF2D	ENSG00000143486.16	ENST00000271764.7:ENST00000367114.7:ENST00000617960.4:ENST00000613435.1:ENST00000484492.5:ENST00000468891.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.0289	2.926485	3.82407	0.0373899	0.0179666	0.146698	0.0918323
chr19	18903372	18903423	17501180	0	-	0.54902	(0.53,0.59]	chr19	1468466	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.0289	2.926485	3.82407	0.0373899	0.0179666	0.146698	0.0918323
chr22	20994557	20994642	18300653	0	+	0.576471	(0.53,0.59]	chr22	1553814	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XXbac-B135H6.19:LZTR1	ENSG00000285314.1:ENSG00000099949.21	ENST00000479606.5:ENST00000646124.2:ENST00000642151.1:ENST00000646506.1:ENST00000643578.1:ENST00000495142.6:ENST00000643710.1:ENST00000415354.6:ENST00000491432.5:ENST00000415817.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	2	18	2	2.0289	2.926485	3.82407	0.0373899	0.0179666	0.146698	0.0918323
chr3	183982537	183982624	4622399	0	-	0.574713	(0.53,0.59]	chr3	381628	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCC5	ENSG00000114770.17	ENST00000334444.11:ENST00000265586.10:ENST00000437205.5:ENST00000492216.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.0289	2.926485	3.82407	0.0373899	0.0179666	0.146698	0.0918323
chr7	140725597	140725696	9109933	0	-	0.424242	(0.42,0.455]	chr7	695266	64	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000642875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	26	2	2.32629	2.9264400000000004	3.52659	0.0153564	6.87022e-4	0.0832114	0.00876781
chr6	43225732	43225832	7707049	0	-	0.62	(0.59,1]	chr6	591229	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DNPH1	ENSG00000112667.13	ENST00000230431.11:ENST00000509253.5:ENST00000393987.2	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.42639	2.926425	3.42646	0.0409084	1.57704e-4	0.163285	0.00261303
chr8	130054535	130054632	10090237	0	-	0.484536	(0.455,0.49]	chr8	758595	26	UTR3	UTR3:EXON_MRNA	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000524124.5:ENST00000357668.2:ENST00000521075.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.92777	2.9262	3.92463	0.0286531	0.0113417	0.128685	0.0665375
chr19	16518379	16518476	17491218	0	-	0.360825	(0.36,0.39]	chr19	1466412	6	UTR3	UTR3:EXON_MRNA:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.55738	2.92606	3.29474	0.00194306	0.0013225	0.0185233	0.0144203
chr14	35307993	35308088	14225533	0	+	0.421053	(0.42,0.455]	chr14	1113824	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000627895.2:ENST00000554541.5:ENST00000261479.9:ENST00000554843.5:ENST00000554961.5:ENST00000554620.5:ENST00000556167.1:ENST00000553809.5:ENST00000553688.5:ENST00000555764.5:ENST00000556506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.54043	2.9260200000000003	3.31161	0.00705852	0.00186138	0.047732	0.018635
chr19	34368642	34368702	17300230	0	+	0.5	(0.49,0.53]	chr19	1429834	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	131	2	2.55459	2.92584	3.29709	1.80911e-5	2.98536e-6	4.49228e-4	1.1135e-4
chrX	154364820	154364888	19278152	0	-	0.661765	(0.59,1]	chrX	1638347	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000465144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	1.61635	2.9258249999999997	4.2353	0.0315401	0.0165254	0.131907	0.0873033
chr6	43528827	43528925	7708137	0	-	0.530612	(0.53,0.59]	chr6	591489	1	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455285.2:ENST00000450462.6:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	50	2	2.84458	2.92566	3.00674	8.9408e-4	5.21436e-4	0.01086	0.00674101
chr1	17408506	17408603	874015	0	-	0.587629	(0.53,0.59]	chr1	89600	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	110	2	2.79854	2.9255899999999997	3.05264	2.97064e-5	1.96889e-5	6.7242e-4	5.29277e-4
chr8	74603425	74603516	9894969	0	-	0.472527	(0.455,0.49]	chr8	748013	3	EXON_PSEUDO	EXON_PSEUDO	PCBP2P2	ENSG00000253341.1	ENST00000517662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	68	2	2.61558	2.9251	3.23462	0.00184897	4.87179e-6	0.0185736	1.51951e-4
chr1	111461290	111461389	407358	0	+	0.30303	(0.29,0.33]	chr1	40192	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.92065	2.92507	2.92949	0.0117842	3.73367e-4	0.0686664	0.00519568
chr14	21351475	21351574	14521123	0	-	0.272727	[0,0.29]	chr14	1137303	1	UTR3	UTR3:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7:ENST00000557394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	1.81505	2.925055	4.03506	0.0409713	4.20009e-5	0.163285	8.92247e-4
chr17	63589859	63589957	16317552	0	+	0.5	(0.49,0.53]	chr17	1323671	8	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	2.51671	2.924975	3.33324	0.00768763	0.00162947	0.050396	0.0169972
chr7	133034774	133034859	9078003	0	-	0.517647	(0.49,0.53]	chr7	693065	3	EXON_PSEUDO	EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	protein_coding	miRNA:protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	14	110	2	2.65955	2.92493	3.19031	4.52255e-5	2.81567e-6	9.44585e-4	1.05663e-4
chr1	244706477	244706575	804416	0	+	0.377551	(0.36,0.39]	chr1	80056	8	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.76778	2.9248450000000004	3.08191	0.00365703	4.1566e-5	0.0307238	8.8376e-4
chr8	140528546	140528646	10132128	0	-	0.43	(0.42,0.455]	chr8	760954	85	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.8096	2.9248149999999997	3.04003	0.00253237	7.68268e-4	0.0233955	0.00916171
chr2	173956134	173956232	3020165	0	-	0.459184	(0.455,0.49]	chr2	267378	14	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	44	2	2.15985	2.9244399999999997	3.68903	0.0128965	1.71879e-5	0.0722356	4.32994e-4
chr6	7282137	7282237	7586813	0	-	0.46	(0.455,0.49]	chr6	578692	11	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	44	2	2.15985	2.9244399999999997	3.68903	0.0128965	1.71879e-5	0.0722356	4.32994e-4
chr1	10137066	10137135	37424	0	+	0.521739	(0.49,0.53]	chr1	4379	1	CDS	CDS:EXON_MRNA:INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11:ENST00000470736.1:ENST00000466379.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	1.90685	2.92431	3.94177	0.0534351	0.0104929	0.184995	0.063428
chr12	110373951	110374047	13536803	0	-	0.510417	(0.49,0.53]	chr12	1064793	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000481473.5:ENST00000552087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	1.90685	2.92431	3.94177	0.0534351	0.0104929	0.184995	0.063428
chr2	69908364	69908464	1878118	0	+	0.5	(0.49,0.53]	chr2	177356	29	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.90685	2.92431	3.94177	0.0534351	0.0104929	0.184995	0.063428
chr22	35417799	35417856	18359569	0	+	0.526316	(0.49,0.53]	chr22	1561047	2	CDS	CDS:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	1.90685	2.92431	3.94177	0.0534351	0.0104929	0.184995	0.063428
chr18	77973964	77974063	17184265	0	-	0.525253	(0.49,0.53]	chr18	1410247	7	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	4	37	2	2.6129	2.92419	3.23548	0.0052746	2.76544e-4	0.0389109	0.00444204
chr17	28574153	28574241	16485923	0	-	0.602273	(0.59,1]	chr17	1347746	2	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	139	2	2.69996	2.924145	3.14833	1.85031e-4	1.7186e-4	0.00302214	0.00296795
chr5	100053344	100053441	6726279	0	-	0.412371	(0.39,0.42]	chr5	517932	6	EXON_PSEUDO	EXON_PSEUDO	MTCO2P22	ENSG00000270225.1	ENST00000603246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	80	2	1.26238	2.924115	4.58585	0.0349113	1.48311e-8	0.144778	1.08841e-6
chr16	2762841	2762939	15494903	0	+	0.581633	(0.53,0.59]	chr16	1227802	14	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000630499.2:ENST00000571378.5	protein_coding	protein_coding	protein_coding	protein_coding	11	103	2	2.59972	2.924055	3.24839	1.91269e-4	4.84953e-6	0.0032874	1.51537e-4
chr16	57253246	57253343	15683884	0	+	0.494845	(0.49,0.53]	chr16	1247542	10	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8:ENST00000563234.1	protein_coding	protein_coding	protein_coding	protein_coding	9	71	2	2.30059	2.92403	3.54747	0.001114	6.21089e-6	0.0127792	1.85694e-4
chr9	33111222	33111319	10631563	0	-	0.237113	[0,0.29]	chr9	803436	7	UTR3	UTR3:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.3458	2.92402	3.50224	0.0116272	7.95529e-4	0.0685835	0.009356
chr1	53796746	53796804	1025860	0	-	0.396552	(0.39,0.42]	chr1	106380	2	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.62131	2.923965	3.22662	0.00609677	0.00257296	0.0439136	0.0229363
chr15	44380890	44380976	14898247	0	+	0.395349	(0.39,0.42]	chr15	1171520	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1:ENST00000559550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.62131	2.923965	3.22662	0.00609677	0.00257296	0.0439136	0.0229363
chr14	75280782	75280872	14403390	0	+	0.466667	(0.455,0.49]	chr14	1125748	1	CDS	CDS:UTR3:EXON_MRNA	FOS	ENSG00000170345.10	ENST00000303562.9:ENST00000535987.5:ENST00000555242.1:ENST00000555686.1:ENST00000555672.1:ENST00000555347.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.12994	2.92396	3.71798	0.0304832	0.0202679	0.130204	0.0984041
chr6	31781543	31781606	7662425	0	-	0.555556	(0.53,0.59]	chr6	585278	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1:ENST00000482996.5:ENST00000479051.1:ENST00000459667.1:ENST00000461874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	38	2	2.29789	2.92395	3.55001	0.00674768	6.11776e-4	0.0468196	0.00818575
chr17	7576523	7576606	16105663	0	+	0.590361	(0.59,1]	chr17	1296956	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581384.5:ENST00000578324.5:ENST00000577731.1:ENST00000583389.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	7	115	2	2.90525	2.92394	2.94263	4.44672e-4	2.35262e-4	0.00598735	0.00387599
chr7	107915600	107915696	8457439	0	+	0.34375	(0.33,0.36]	chr7	646312	2	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	36	2	2.17058	2.923935	3.67729	0.01664	1.89665e-5	0.0878065	4.64808e-4
chr10	124397849	124397941	11729253	0	-	0.532609	(0.53,0.59]	chr10	895040	7	UTR3	UTR3:EXON_MRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	2.51602	2.923865	3.33171	0.00264912	7.58734e-6	0.024013	2.19184e-4
chr5	37305133	37305210	6540091	0	-	0.402597	(0.39,0.42]	chr5	506544	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	45	2	2.13033	2.92386	3.71739	0.00865856	1.41698e-5	0.0557159	3.66245e-4
chr19	10634973	10635073	17225794	0	+	0.43	(0.42,0.455]	chr19	1418770	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC44A2	ENSG00000129353.15	ENST00000588465.5:ENST00000407327.8:ENST00000586078.5:ENST00000335757.10:ENST00000588409.1:ENST00000588393.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.57051	2.9237900000000003	3.27707	0.0265466	0.00207325	0.120071	0.0194849
chr6	17637328	17637416	7619098	0	-	0.420455	(0.42,0.455]	chr6	580546	3	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.57051	2.9237900000000003	3.27707	0.0265466	0.00207325	0.120071	0.0194849
chr10	69172447	69172545	11094678	0	+	0.326531	(0.29,0.33]	chr10	843467	13	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.36742	2.923715	3.48001	0.0147368	0.00126219	0.0801529	0.013837
chr14	58410842	58410938	14652185	0	-	0.375	(0.36,0.39]	chr14	1147554	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000555061.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	2.64542	2.9237	3.20198	6.12028e-4	4.4092e-4	0.00763546	0.0062930699999999996
chr1	1022342	1022413	2067	0	+	0.577465	(0.53,0.59]	chr1	458	3	CDS	CDS:UTR5:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.97928	2.923685	3.86809	0.0218546	1.18973e-4	0.104785	0.00207755
chr3	37042267	37042331	3411045	0	+	0.359375	(0.33,0.36]	chr3	296338	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000673889.1:ENST00000616768.5:ENST00000450420.5:ENST00000413740.1:ENST00000674125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.6995	2.92361	3.14772	0.017838	6.79194e-4	0.0934844	0.00876781
chr1	53038935	53038990	197792	0	+	0.454545	(0.42,0.455]	chr1	25177	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000430330.6:ENST00000408941.7:ENST00000533119.1:ENST00000484100.5:ENST00000478274.6:ENST00000435345.6:ENST00000488965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.47379	2.92354	3.37329	0.00996858	0.00136107	0.0621728	0.0141115
chr2	231712851	231712943	2426301	0	+	0.423913	(0.42,0.455]	chr2	218683	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PTMA:MIR1244-1	ENSG00000187514.17:ENSG00000284378.1	ENST00000466801.5:ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000409683.5:ENST00000410064.5:ENST00000412128.1:ENST00000612829.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	53	365	2	2.83833	2.92352	3.00871	2.57435e-7	1.41564e-8	1.25763e-5	1.14564e-6
chr19	54187223	54187287	17627797	0	-	0.625	(0.59,1]	chr19	1488042	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000414665.5:ENST00000453320.1:ENST00000464098.5:ENST00000474910.5:ENST00000491216.5:ENST00000495968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	101	2	2.00381	2.9232750000000003	3.84274	0.0121278	1.85745e-5	0.0701019	5.04916e-4
chr10	58398726	58398825	11057894	0	+	0.313131	(0.29,0.33]	chr10	841634	38	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.78823	2.9232050000000003	3.05818	8.11145e-4	3.19046e-4	0.00952488	0.00491578
chr11	14457664	14457743	12281545	0	-	0.316456	(0.29,0.33]	chr11	949564	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000532088.1:ENST00000525214.1:ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	57	2	2.50855	2.92305	3.33755	0.0023535	2.21339e-6	0.0222204	7.80484e-5
chr5	91370706	91370805	6695316	0	-	0.363636	(0.36,0.39]	chr5	516141	22	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	60	2	2.85507	2.922965	2.99086	3.25198e-4	3.51295e-5	0.00500369	7.71015e-4
chr1	207324558	207324654	686294	0	+	0.4375	(0.42,0.455]	chr1	69478	1	CDS	CDS:EXON_MRNA:INTRON	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6	protein_coding	protein_coding	protein_coding	protein_coding	12	100	2	2.32213	2.9228050000000003	3.52348	0.00108241	1.79784e-7	0.0124971	9.28825e-6
chr3	33068822	33068896	4111686	0	-	0.594595	(0.59,1]	chr3	343535	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000446732.5:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	124	2	2.4608	2.9227600000000002	3.38472	0.00407427	1.34433e-5	0.0324137	3.5182e-4
chr16	75628568	75628640	16039073	0	-	0.583333	(0.53,0.59]	chr16	1288285	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000569298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	2.0892	2.922675	3.75615	0.00316986	2.16536e-4	0.0267094	0.00361336
chr4	98891236	98891332	5547794	0	-	0.40625	(0.39,0.42]	chr4	443108	1	CDS	CDS:EXON_MRNA:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000505829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	2.61392	2.922245	3.23057	0.0017565	3.34829e-4	0.0171455	0.00509483
chr20	50936204	50936262	18006721	0	-	0.275862	[0,0.29]	chr20	1526287	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000494752.1:ENST00000682366.1:ENST00000371584.9:ENST00000684193.1:ENST00000683466.1:ENST00000682713.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	2.55853	2.92218	3.28583	0.007538	0.00346525	0.0497903	0.0293796
chr5	168557270	168557370	6968990	0	-	0.31	(0.29,0.33]	chr5	532791	89	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.71205	2.922085	3.13212	0.00551048	0.00120479	0.0414592	0.0129255
chr19	58549798	58549860	17413355	0	+	0.645161	(0.59,1]	chr19	1451214	2	CDS	CDS:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595974.5:ENST00000600840.1:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	2	39	2	2.84944	2.92191	2.99438	0.0128238	0.00776449	0.0719798	0.050813
chr8	125009257	125009343	9595459	0	+	0.348837	(0.33,0.36]	chr8	727919	2	CDS	CDS:EXON_MRNA	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000518931.1	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.65713	2.9218900000000003	4.18665	0.0528205	3.10298e-8	0.195536	2.05188e-6
chr6	31668577	31668634	7116071	0	+	0.526316	(0.49,0.53]	chr6	545966	1	CDS	CDS:UTR3:EXON_MRNA	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000465481.6:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	81	2	2.82357	2.92174	3.01991	8.92113e-5	2.36197e-5	0.00165731	6.15843e-4
chrX	154380953	154381025	18917488	0	+	0.5	(0.49,0.53]	chrX	1611787	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMD	ENSG00000102119.12	ENST00000369835.3:ENST00000369842.9:ENST00000486738.5:ENST00000428228.5:ENST00000485261.1:ENST00000682114.1:ENST00000684678.1:ENST00000683627.1:ENST00000684082.1:ENST00000684633.1:ENST00000682478.1:ENST00000683576.1:ENST00000492448.1:ENST00000471965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	99	2	2.76018	2.921705	3.08323	1.35342e-4	3.29271e-6	0.0025037	1.09002e-4
chr6	158765935	158766033	8043893	0	-	0.387755	(0.36,0.39]	chr6	614903	3	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	2.8201	2.9216249999999997	3.02315	8.65481e-4	1.26337e-4	0.0100741	0.00239741
chr8	54047364	54047464	9833040	0	-	0.27	[0,0.29]	chr8	744007	11	UTR3	UTR3:EXON_MRNA	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10	protein_coding	protein_coding	protein_coding	protein_coding	10	47	2	2.34608	2.9215400000000002	3.497	0.0012984	9.67198e-6	0.0142093	2.68661e-4
chr5	133972270	133972370	6843265	0	-	0.44	(0.42,0.455]	chr5	523565	5	UTR3	UTR3:EXON_MRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.04415	2.92148	3.79881	0.0101476	1.65328e-4	0.0627153	0.0029267300000000002
chr8	22252011	22252111	9223599	0	+	0.51	(0.49,0.53]	chr8	705500	16	UTR3	UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.6129	2.92148	3.23006	0.0052746	0.00253719	0.0389109	0.0233955
chr22	16611814	16611893	18285825	0	+	0.506329	(0.49,0.53]	chr22	1551652	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	5	45	2	2.78773	2.921425	3.05512	0.00257389	1.59562e-4	0.0235767	0.00263091
chr16	68122364	68122458	15714216	0	+	0.425532	(0.42,0.455]	chr16	1250981	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	2.22933	2.9212800000000003	3.61323	0.0102262	2.83914e-5	0.062872	6.46853e-4
chr1	36282563	36282663	141497	0	+	0.44	(0.42,0.455]	chr1	17549	1	CDS_START	CDS_START:CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.5451	2.92115	3.2972	0.00112955	1.93851e-4	0.0128875	0.00307904
chr6	49605174	49605270	7729591	0	-	0.260417	[0,0.29]	chr6	592928	1	UTR3	UTR3:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	2.87662	2.920975	2.96533	0.0024246	3.31836e-5	0.0227938	7.33555e-4
chr2	113957359	113957455	2007120	0	+	0.416667	(0.39,0.42]	chr2	190800	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	101	2	2.8904	2.920925	2.95145	1.70949e-4	1.92259e-6	0.00301144	6.94509e-5
chr5	72914066	72914164	6029444	0	+	0.367347	(0.36,0.39]	chr5	472817	55	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.37674	2.920855	3.46497	0.00529284	0.00105709	0.0390084	0.0123035
chr16	28832498	28832567	15620347	0	+	0.565217	(0.53,0.59]	chr16	1238445	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	7	67	2	2.6804	2.92075	3.1611	4.7595e-4	8.49658e-5	0.00672665	0.00159594
chr12	118136123	118136209	13108846	0	+	0.732558	(0.59,1]	chr12	1023098	1	UTR5	UTR5:EXON_MRNA	PEBP1	ENSG00000089220.5	ENST00000261313.3	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.4994	2.9205550000000002	3.34171	0.0333573	0.00234977	0.137922	0.0222173
chr4	82357378	82357444	5493502	0	-	0.484848	(0.455,0.49]	chr4	439976	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000508119.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	1.96875	2.92054	3.87233	0.0480352	1.08465e-4	0.180552	0.00193256
chr15	101289513	101289613	15476197	0	-	0.35	(0.33,0.36]	chr15	1223508	3	SS5_PROX	SS5_PROX:INTRON	SNRPA1	ENSG00000131876.17	ENST00000254193.11:ENST00000558036.5:ENST00000559309.5:ENST00000394082.8:ENST00000540017.6:ENST00000560496.5:ENST00000560383.5:ENST00000558059.5:ENST00000626000.1:ENST00000560987.5:ENST00000560856.5:ENST00000558020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.51797	2.920335	3.3227	0.0303594	0.00222616	0.130016	0.0211992
chr5	113019522	113019621	6153954	0	+	0.323232	(0.29,0.33]	chr5	480731	62	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.45373	2.920335	3.38694	0.0156405	2.05464e-5	0.084273700000000007	4.97417e-4
chr19	11059818	11059885	17229646	0	+	0.58209	(0.53,0.59]	chr19	1419506	2	CDS	CDS:UTR3:EXON_MRNA	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000647268.1:ENST00000643857.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1:ENST00000538456.4:ENST00000586985.2:ENST00000646889.1:ENST00000643929.1:ENST00000645387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.22207	2.920315	3.61856	0.0303021	0.00910511	0.129773	0.0576716
chr19	50417847	50417947	17376174	0	+	0.64	(0.59,1]	chr19	1444538	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	POLD1:CTD-2545M3.6	ENSG00000062822.15:ENSG00000142539.9	ENST00000600859.5:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000440232.7:ENST00000595904.6:ENST00000593981.1:ENST00000599632.1:ENST00000597963.5:ENST00000596221.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	42	2	2.32455	2.920315	3.51608	0.0520547	0.00108676	0.193787	0.0118659
chr3	195788022	195788121	4661147	0	-	0.565657	(0.53,0.59]	chr3	385270	94	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.22207	2.920315	3.61856	0.0303021	0.00910511	0.129773	0.0576716
chr6	31411071	31411167	7114576	0	+	0.53125	(0.53,0.59]	chr6	545618	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICA:XXbac-BPG181B23.9	ENSG00000204520.14:ENSG00000288587.1	ENST00000616296.4:ENST00000674069.1:ENST00000673857.1:ENST00000673996.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	24	2	2.22207	2.920315	3.61856	0.0303021	0.00910511	0.129773	0.0576716
chr8	144318094	144318169	10148352	0	-	0.653333	(0.59,1]	chr8	763474	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DGAT1	ENSG00000185000.12	ENST00000528718.6:ENST00000524965.5:ENST00000332324.5:ENST00000524844.1:ENST00000531896.5:ENST00000525371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	42	2	2.32455	2.920315	3.51608	0.0520547	0.00108676	0.193787	0.0118659
chr1	23961703	23961777	99136	0	+	0.391892	(0.39,0.42]	chr1	11601	3	CDS	CDS:EXON_MRNA	PNRC2	ENSG00000189266.13	ENST00000647887.1:ENST00000334351.8:ENST00000374468.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.74243	2.9198950000000004	3.09736	0.00369167	5.79886e-4	0.030936	0.00734771
chr20	34280458	34280554	17946659	0	-	0.416667	(0.39,0.42]	chr20	1519947	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP4-785G19.5:AHCY	ENSG00000250917.1:ENSG00000101444.13	ENST00000512005.1:ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	32	2	2.74243	2.9198950000000004	3.09736	0.00369167	5.79886e-4	0.030936	0.00734771
chr11	62639678	62639731	12409869	0	-	0.54717	(0.53,0.59]	chr11	961325	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1:ENST00000534779.5:ENST00000534613.5:ENST00000525994.1:ENST00000526210.1:ENST00000526392.1:ENST00000529737.5:ENST00000534419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	46	2	2.27113	2.91988	3.56863	0.0178853	3.93456e-5	0.0918323	8.48445e-4
chr1	45002634	45002729	973518	0	-	0.473684	(0.455,0.49]	chr1	102742	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HECTD3	ENSG00000126107.15	ENST00000372168.7:ENST00000486132.5:ENST00000372172.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	1.81931	2.919855	4.0204	0.0235519	0.00736097	0.108737	0.0490627
chr8	102839736	102839823	9984548	0	-	0.390805	(0.39,0.42]	chr8	753482	2	CDS	CDS:EXON_MRNA:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.89968	2.91982	3.93996	0.0298458	0.00841622	0.130016	0.054565
chr19	12559848	12559941	17236699	0	+	0.55914	(0.53,0.59]	chr19	1420584	4	EXON_PSEUDO	EXON_PSEUDO	PGK1P2	ENSG00000213290.4	ENST00000431702.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	33	2	2.90978	2.9196999999999997	2.92962	0.00857883	0.0012954	0.0552386	0.0136936
chrX	19357663	19357719	18604934	0	+	0.535714	(0.53,0.59]	chrX	1589048	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000481733.1:ENST00000379804.1:ENST00000478795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	33	2	2.90978	2.9196999999999997	2.92962	0.00857883	0.0012954	0.0552386	0.0136936
chr5	136178471	136178570	6241263	0	+	0.313131	(0.29,0.33]	chr5	486031	11	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.35931	2.91966	3.48001	0.00615202	0.00126219	0.0438642	0.013837
chr14	103519764	103519863	14795316	0	-	0.646465	(0.59,1]	chr14	1159531	2	UTR3	UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000554989.1:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	123	2	2.78779	2.91947	3.05115	0.00103208	1.12848e-4	0.0121443	0.0020041
chr12	110436556	110436619	13537453	0	-	0.444444	(0.42,0.455]	chr12	1064874	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-478C19.2:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000467622.2:ENST00000426440.5:ENST00000476566.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	4	35	2	2.91373	2.91943	2.92513	0.00892357	3.39829e-4	0.0567495	0.00479167
chr13	98022316	98022415	13859288	0	+	0.454545	(0.42,0.455]	chr13	1086746	6	UTR3	UTR3:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	1.86513	2.91942	3.97371	0.0357107	6.07552e-5	0.147298	0.00121305
chr1	19121352	19121434	876099	0	-	0.585366	(0.53,0.59]	chr1	90060	3	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.08252	2.9193350000000002	3.75615	0.0050389	2.16536e-4	0.0372588	0.00361336
chr19	18435404	18435483	17499318	0	-	0.658228	(0.59,1]	chr19	1468100	3	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582287.6:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2:ENST00000583309.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.53147	2.919275	3.30708	0.00807544	0.00252451	0.0531324	0.0226777
chr1	15828318	15828406	70876	0	+	0.556818	(0.53,0.59]	chr1	8026	2	EXON_PSEUDO	EXON_PSEUDO	RP11-169K16.8	ENSG00000178715.8	ENST00000321418.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	45	2	2.52856	2.918995	3.30943	0.0018255	0.00107225	0.0183913	0.0118238
chr2	26279993	26280054	1686320	0	+	0.459016	(0.455,0.49]	chr2	164854	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.84079	2.9187450000000004	2.9967	0.00650423	0.00201021	0.0454205	0.0190112
chr1	233666594	233666693	760203	0	+	0.555556	(0.53,0.59]	chr1	76989	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KCNK1	ENSG00000135750.15	ENST00000366621.8:ENST00000472190.5:ENST00000366620.5:ENST00000487728.1:ENST00000446915.1:ENST00000472869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	2.37399	2.91874	3.46349	0.0126178	9.2216e-4	0.0717599	0.0104432
chr12	6673215	6673290	13188087	0	-	0.56	(0.53,0.59]	chr12	1032591	1	CDS	CDS:EXON_MRNA	ZNF384	ENSG00000126746.18	ENST00000319770.7:ENST00000683879.1:ENST00000396801.7:ENST00000361959.7:ENST00000355772.8:ENST00000537383.1:ENST00000417772.7:ENST00000542519.1:ENST00000436774.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.37399	2.91874	3.46349	0.0126178	9.2216e-4	0.0717599	0.0104432
chr9	107322050	107322118	10410461	0	+	0.5	(0.49,0.53]	chr9	784013	2	CDS	CDS:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	8	66	2	1.57891	2.91864	4.25837	0.0281303	2.60666e-7	0.126918	1.26854e-5
chr2	26373453	26373541	1687171	0	+	0.386364	(0.36,0.39]	chr2	164927	2	CDS	CDS:EXON_MRNA:INTRON	SELENOI	ENSG00000138018.18	ENST00000442141.5:ENST00000613142.4:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.16717	2.918475	3.66978	0.0152504	3.25031e-4	0.0828908	0.00463603
chr5	55344521	55344620	5973352	0	+	0.444444	(0.42,0.455]	chr5	468303	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1:ENST00000505565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	74	2	2.77409	2.918425	3.06276	1.22763e-4	1.83422e-5	0.00213274	5.00351e-4
chr16	24824968	24825065	15603103	0	+	0.340206	(0.33,0.36]	chr16	1237217	13	UTR3	UTR3:EXON_MRNA:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000569098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.86073	2.9183950000000003	2.97606	0.0105608	0.00871774	0.0644466	0.0558165
chr8	37860805	37860904	9794185	0	-	0.333333	(0.33,0.36]	chr8	740400	23	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.86073	2.9183950000000003	2.97606	0.0105608	0.00871774	0.0644466	0.0558165
chr19	41279076	41279176	17334041	0	+	0.59	(0.53,0.59]	chr19	1436738	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000597725.5:ENST00000599719.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000594207.1:ENST00000263367.7:ENST00000599614.5:ENST00000600596.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	32	2	2.36244	2.9183149999999998	3.47419	0.0131162	8.75273e-4	0.073569	0.0106963
chr1	113973120	113973217	418206	0	+	0.639175	(0.59,1]	chr1	41197	2	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.84748	2.9183000000000003	2.9891200000000002	0.0124539	0.00823979	0.0712518	0.0540283
chr19	55591472	55591570	17632980	0	-	0.540816	(0.53,0.59]	chr19	1489633	2	UTR3	UTR3:EXON_MRNA	FIZ1	ENSG00000179943.8	ENST00000221665.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.71318	2.91829	3.1234	0.00390623	0.00340745	0.0322851	0.0283456
chr2	27212368	27212467	1691414	0	+	0.69697	(0.59,1]	chr2	165608	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	ATRAID	ENSG00000138085.17	ENST00000380171.8:ENST00000611786.4:ENST00000484646.1:ENST00000405489.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	1.96265	2.91799	3.87333	0.0348991	0.0238491	0.141505	0.112466
chr6	10756888	10756981	7048727	0	+	0.236559	[0,0.29]	chr6	539800	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5:ENST00000478732.1:ENST00000467229.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	41	2	2.16074	2.917955	3.67517	0.0222978	2.4982e-6	0.105845	8.67672e-5
chr19	39384128	39384228	17325897	0	+	0.3	(0.29,0.33]	chr19	1434772	5	UTR3	UTR3:EXON_MRNA:INTRON	SAMD4B	ENSG00000179134.15	ENST00000598913.5:ENST00000314471.10:ENST00000610417.4:ENST00000611159.4:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding	7	30	2	2.09822	2.917915	3.73761	0.00565103	2.33029e-4	0.0422191	0.00355688
chr21	44806309	44806408	18277273	0	-	0.424242	(0.42,0.455]	chr21	1550219	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	1.68865	2.91785	4.14705	0.0276098	2.1071e-5	0.124664	5.06044e-4
chr1	202005888	202005974	662124	0	+	0.639535	(0.59,1]	chr1	66476	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNPEP	ENSG00000176393.11	ENST00000295640.9:ENST00000367286.7:ENST00000471105.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.99004	2.917805	3.84557	0.0410704	0.0214639	0.163285	0.102904
chr11	85996825	85996877	12526113	0	-	0.480769	(0.455,0.49]	chr11	972210	1	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	18	141	2	2.65694	2.91777	3.1786	7.76094e-5	1.78054e-7	0.00162479	9.20976e-6
chr1	2307750	2307848	7383	0	+	0.469388	(0.455,0.49]	chr1	1667	11	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	1.8708	2.91772	3.96464	0.0324007	6.27408e-5	0.134751	0.00135074
chr2	128190929	128191027	2060521	0	+	0.489796	(0.455,0.49]	chr2	193397	13	UTR3	UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	1.8708	2.91772	3.96464	0.0324007	6.27408e-5	0.134751	0.00135074
chr9	122820364	122820455	10841287	0	-	0.461538	(0.455,0.49]	chr9	821335	3	CDS	CDS:EXON_MRNA:INTRON	PDCL	ENSG00000136940.14	ENST00000436632.5:ENST00000259467.9	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.50904	2.9177049999999998	3.32637	0.0310515	1.64563e-4	0.131262	0.00269001
chr1	44843920	44844001	972092	0	-	0.567901	(0.53,0.59]	chr1	102634	1	EXON_PSEUDO	EXON_PSEUDO	RP5-882O7.1	ENSG00000226499.1	ENST00000447970.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	35	2	1.90953	2.91763	3.92573	0.0517711	8.62301e-5	0.193577	0.00160749
chr22	21610949	21611043	18303070	0	+	0.489362	(0.455,0.49]	chr22	1554187	2	CDS	CDS:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	114	2	2.27002	2.9175750000000003	3.56513	1.79783e-4	3.38192e-7	0.0031384	1.58588e-5
chr10	73047012	73047101	11568636	0	-	0.449438	(0.42,0.455]	chr10	880481	2	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	23	226	2	1.88541	2.91756	3.94971	0.00245544	5.52079e-11	0.0230058	8.02095e-9
chr9	133362120	133362216	10880432	0	-	0.6875	(0.59,1]	chr9	825839	8	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	5	71	2	2.12699	2.9175250000000004	3.70806	0.00764565	5.14321e-4	0.0503696	0.00719062
chr12	67305401	67305501	12934060	0	+	0.41	(0.39,0.42]	chr12	1008094	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.3855	2.917365	3.44923	0.0049615	0.00105208	0.0368419	0.0123035
chr9	92249857	92249941	10737125	0	-	0.333333	(0.33,0.36]	chr9	812273	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	52	2	2.35083	2.9173400000000003	3.48385	0.00132967	9.93473e-6	0.0144372	2.74996e-4
chr2	117821861	117821961	2021774	0	+	0.46	(0.455,0.49]	chr2	191084	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000474694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.83792	2.91731	2.9967	0.0110512	0.00650423	0.0665375	0.0454205
chr1	6185990	6186087	842294	0	-	0.340206	(0.33,0.36]	chr1	84886	11	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	60	2	2.11259	2.917205	3.72182	0.00215122	1.63969e-6	0.0208395	6.05996e-5
chr2	110655827	110655916	2838101	0	-	0.494382	(0.49,0.53]	chr2	253324	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	59	2	2.87508	2.91718	2.95928	4.55699e-4	9.07604e-5	0.00645757	0.00167715
chrX	153700847	153700936	19273611	0	-	0.674157	(0.59,1]	chrX	1637347	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	70	2	2.71222	2.917165	3.12211	0.00398753	7.51607e-4	0.031888	0.00938882
chr10	93284188	93284280	11625742	0	-	0.391304	(0.39,0.42]	chr10	884964	3	EXON_PSEUDO	EXON_PSEUDO	RPL17P34	ENSG00000213432.2	ENST00000394133.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	25	2	2.784	2.91715	3.0503	0.00570576	0.00261393	0.0424438	0.0230705
chr5	163439356	163439438	6343376	0	+	0.402439	(0.39,0.42]	chr5	493986	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5:ENST00000511683.6:ENST00000512532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.784	2.91715	3.0503	0.00570576	0.00261393	0.0424438	0.0230705
chr16	21404815	21404908	15888079	0	-	0.580645	(0.53,0.59]	chr16	1271079	2	CDS	CDS:EXON_MRNA	NPIPB3	ENSG00000169246.16	ENST00000542817.1:ENST00000504841.6	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.45052	2.916995	3.38347	0.00355092	0.00132446	0.0300049	0.0138834
chr6	67882280	67882380	7784083	0	-	0.48	(0.455,0.49]	chr6	596223	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	73	497	2	2.6251	2.9168200000000004	3.20854	3.43255e-7	2.33966e-9	1.60752e-5	2.39554e-7
chr15	58627699	58627791	15310985	0	-	0.326087	(0.29,0.33]	chr15	1208303	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000475898.1:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	40	2	1.83055	2.9167349999999996	4.00292	0.0348758	1.8375e-6	0.144642	6.67783e-5
chr7	107919452	107919549	8457482	0	+	0.350515	(0.33,0.36]	chr7	646335	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	97	2	2.53918	2.916615	3.29405	7.08762e-5	5.30168e-7	0.00149809	2.33131e-5
chr7	72942629	72942728	8330201	0	+	0.59596	(0.59,1]	chr7	634054	9	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.73861	2.9165799999999997	3.09455	0.00125376	7.92671e-4	0.0138274	0.00933379
chr3	23273858	23273910	3354465	0	+	0.403846	(0.39,0.42]	chr3	294043	2	EXON_SMALL	EXON_SMALL:INTRON	UBE2E2:Y_RNA	ENSG00000182247.10:ENSG00000206728.1	ENST00000425792.5:ENST00000452894.5:ENST00000335798.8:ENST00000396703.6:ENST00000384001.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:nonsense_mediated_decay	3	24	2	2.38313	2.9161799999999998	3.44923	0.0128066	0.00105208	0.0725185	0.0123035
chr3	48751182	48751282	4170046	0	-	0.41	(0.39,0.42]	chr3	350020	47	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13:ENST00000454963.5:ENST00000296446.12:ENST00000437821.2	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.38313	2.9161799999999998	3.44923	0.0128066	0.00105208	0.0725185	0.0123035
chr9	97930627	97930726	10759657	0	-	0.464646	(0.455,0.49]	chr9	814691	7	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	17	125	2	2.82424	2.916055	3.00787	1.34706e-5	1.92021e-6	3.86064e-4	6.93722e-5
chr16	1962097	1962197	15823808	0	-	0.57	(0.53,0.59]	chr16	1261850	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	439	2	2.72338	2.91601	3.10864	1.08314e-6	1.89058e-8	4.73402e-5	1.345e-6
chr6	85637299	85637356	7826030	0	-	0.473684	(0.455,0.49]	chr6	599595	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.27152	2.915945	3.56037	0.00786769	5.72551e-4	0.0514287	0.0078026
chr21	8437639	8437738	18041920	0	+	0.545455	(0.53,0.59]	chr21	1530900	46	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	2680	23087	2	2.81044	2.91594	3.02144	1.12544e-8	1.39261e-9	9.42179e-7	1.40869e-7
chr20	482360	482460	17871437	0	-	0.44	(0.42,0.455]	chr20	1511949	37	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	2.59462	2.915845	3.23707	0.0062772	2.71467e-4	0.0445415	0.00404536
chrX	124101773	124101871	18852597	0	+	0.295918	(0.29,0.33]	chrX	1606330	13	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	130	2	2.43229	2.91569	3.39909	1.01435e-4	1.74377e-8	0.00198567	1.25593e-6
chr17	41867709	41867809	16543745	0	-	0.49	(0.455,0.49]	chr17	1356443	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000588779.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.52734	2.91559	3.30384	0.00792433	0.00184955	0.0523592	0.0178046
chr12	93401471	93401570	13019168	0	+	0.252525	[0,0.29]	chr12	1013446	22	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	2.70065	2.915395	3.13014	5.07704e-4	2.66868e-4	0.00660682	0.0043067
chr1	207767714	207767778	689946	0	+	0.359375	(0.33,0.36]	chr1	70085	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	25	2	2.17058	2.9152500000000003	3.65992	0.01664	3.45596e-4	0.0878065	0.00486237
chr1	27891705	27891796	910770	0	-	0.505495	(0.49,0.53]	chr1	95226	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000419958.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr16	89298170	89298269	16077284	0	-	0.525253	(0.49,0.53]	chr16	1292149	60	INTRON	INTRON	ANKRD11	ENSG00000167522.16	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000613312.4:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr19	28436988	28437061	17525175	0	-	0.520548	(0.49,0.53]	chr19	1470905	2	EXON_LNCRNA	EXON_LNCRNA	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5	lncRNA	lncRNA	lncRNA	lncRNA	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr2	128013029	128013091	2870287	0	-	0.516129	(0.49,0.53]	chr2	256654	1	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10:ENST00000424298.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr22	21434892	21434992	18302209	0	+	0.52	(0.49,0.53]	chr22	1554118	138	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr22	41831470	41831569	18383184	0	+	0.50505	(0.49,0.53]	chr22	1564977	58	UTR3	UTR3:EXON_MRNA	CCDC134	ENSG00000100147.14	ENST00000255784.6	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr6	41599921	41600019	7149872	0	+	0.5	(0.49,0.53]	chr6	551565	11	UTR3	UTR3:EXON_MRNA	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr7	93192308	93192363	8927643	0	-	0.509091	(0.49,0.53]	chr7	681253	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2:ENST00000492616.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr8	22612978	22613078	9226938	0	+	0.51	(0.49,0.53]	chr8	706075	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CCAR2	ENSG00000158941.16	ENST00000308511.8:ENST00000389279.7:ENST00000520861.5:ENST00000522599.5	protein_coding	protein_coding	protein_coding	protein_coding	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chrX	48906508	48906543	19063539	0	-	0.514286	(0.49,0.53]	chrX	1620565	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC35A2	ENSG00000102100.16	ENST00000635285.1:ENST00000247138.11:ENST00000376521.6:ENST00000376529.8:ENST00000635628.1:ENST00000635460.1:ENST00000445167.7:ENST00000413561.7:ENST00000376515.8:ENST00000635589.1:ENST00000616181.5:ENST00000452555.7:ENST00000446885.1:ENST00000635238.1:ENST00000634665.1:ENST00000635015.1:ENST00000376512.2:ENST00000634461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	12	2	2.38097	2.91524	3.44951	0.0425419	0.0405223	0.167547	0.153343
chr7	74195168	74195208	8334061	0	+	0.525	(0.49,0.53]	chr7	634969	1	CDS	CDS:UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.83191	2.9152	2.99849	0.00630123	1.99461e-4	0.0445415	0.00316009
chr19	1611319	1611415	17419521	0	-	0.40625	(0.39,0.42]	chr19	1452654	22	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000592395.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000587425.5:ENST00000585731.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	45	2	2.87247	2.915165	2.95786	0.00138212	1.58014e-4	0.0149186	0.00261731
chr4	38697163	38697263	4796658	0	+	0.53	(0.49,0.53]	chr4	395581	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	1.94299	2.9151499999999997	3.88731	0.0152714	4.40111e-6	0.0828908	1.3969e-4
chr16	58165633	58165708	15965684	0	-	0.48	(0.455,0.49]	chr16	1280943	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	43	2	1.96875	2.91514	3.86153	0.0480352	5.21014e-6	0.180552	1.60138e-4
chr1	150575968	150576067	1288937	0	-	0.373737	(0.36,0.39]	chr1	128249	19	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	1.66836	2.914895	4.16143	0.0474647	0.00486719	0.17993	0.0366328
chr1	244860423	244860523	1591353	0	-	0.28	[0,0.29]	chr1	158420	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000638301.1:ENST00000639667.1:ENST00000465881.2:ENST00000638589.1:ENST00000640440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	33	2	2.50578	2.91488	3.32398	0.00151355	1.88525e-4	0.0161238	0.00301697
chr3	139366567	139366636	4479557	0	-	0.449275	(0.42,0.455]	chr3	372221	1	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.40664	2.9148699999999996	3.4231	0.00445101	0.00112541	0.0340751	0.0128481
chr12	56613087	56613160	13351853	0	-	0.520548	(0.49,0.53]	chr12	1051689	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1:ENST00000547647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	2.59881	2.914435	3.23006	0.00253719	0.00184545	0.0233955	0.0178046
chr7	128865757	128865847	8522612	0	+	0.422222	(0.42,0.455]	chr7	650500	3	UTR3	UTR3:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.47379	2.9143499999999998	3.35491	0.00996858	1.39104e-4	0.0621728	0.00235518
chr1	32775423	32775516	923468	0	-	0.591398	(0.59,1]	chr1	97310	3	UTR3	UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.5215	2.9142900000000003	3.30708	0.032241	0.00252451	0.135671	0.0226777
chr1	1054499	1054551	2442	0	+	0.692308	(0.59,1]	chr1	586	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	52	2	2.38614	2.91426	3.44238	0.0128707	0.00158239	0.0725185	0.0167793
chr10	73769415	73769485	11115857	0	+	0.485714	(0.455,0.49]	chr10	845914	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000496827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	2.69053	2.9142	3.13787	0.0182983	4.66183e-4	0.0925808	0.00616585
chr18	1363123	1363220	16976321	0	-	0.474227	(0.455,0.49]	chr18	1396247	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC00470:RP11-288C17.1	ENSG00000132204.14:ENSG00000265417.1	ENST00000657423.1:ENST00000657618.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000667416.1:ENST00000661852.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000669312.1:ENST00000581430.5:ENST00000658090.1:ENST00000667225.1:ENST00000579735.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	3	29	2	2.69053	2.9142	3.13787	0.0182983	4.66183e-4	0.0925808	0.00616585
chrX	70963210	70963293	18729620	0	+	0.409639	(0.39,0.42]	chrX	1598079	4	EXON_PSEUDO	EXON_PSEUDO	RPS23P8	ENSG00000230629.2	ENST00000429775.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	138	2	2.75275	2.914195	3.07564	1.58251e-5	4.36941e-7	4.42792e-4	1.97616e-5
chr14	102044395	102044491	14495850	0	+	0.5	(0.49,0.53]	chr14	1133260	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000646418.1:ENST00000642716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.38683	2.9141649999999997	3.4415	0.012654	9.98297e-4	0.0718207	0.0111246
chr6	135217880	135217980	7415096	0	+	0.51	(0.49,0.53]	chr6	568360	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	28	2	2.38683	2.9141649999999997	3.4415	0.012654	9.98297e-4	0.0718207	0.0111246
chr1	155301295	155301395	1307654	0	-	0.51	(0.49,0.53]	chr1	132238	1	CDS_START	CDS_START:CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.72712	2.91411	3.1011	9.78408e-4	5.69237e-4	0.0109424	0.00778538
chr18	2917992	2918092	16984773	0	-	0.36	(0.33,0.36]	chr18	1396458	11	UTR3	UTR3:EXON_MRNA	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.69981	2.914105	4.1284	0.0370662	0.00407303	0.145667	0.0324137
chr9	128190386	128190444	10863962	0	-	0.672414	(0.59,1]	chr9	823455	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	84	2	2.85681	2.9141	2.97139	0.00235278	3.85356e-4	0.0222204	0.00531819
chr1	167935741	167935841	1349279	0	-	0.64	(0.59,1]	chr1	138248	1	CDS_START	CDS_START:CDS:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8:ENST00000458574.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.59461	2.9140449999999998	3.23348	0.0259455	0.00352837	0.117079	0.0298518
chrX	77899553	77899593	18744859	0	+	0.45	(0.42,0.455]	chrX	1599619	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	12	91	2	2.81083	2.91379	3.01675	1.05629e-4	5.48542e-6	0.00204591	1.67068e-4
chr5	113018928	113019027	6153948	0	+	0.454545	(0.42,0.455]	chr5	480731	56	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.63665	2.913715	3.19078	0.0048172	0.00310864	0.0365653	0.0274272
chr1	113107593	113107675	413494	0	+	0.390244	(0.39,0.42]	chr1	40812	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000466069.5:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.49701	2.913405	3.3298	0.0339607	0.00165391	0.141431	0.0163614
chr5	140528372	140528467	6255119	0	+	0.410526	(0.39,0.42]	chr5	487634	3	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.49701	2.913405	3.3298	0.0339607	0.00165391	0.141431	0.0163614
chr7	119716156	119716256	9032209	0	-	0.4	(0.39,0.42]	chr7	689723	108	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5	lncRNA	lncRNA	lncRNA	lncRNA	4	31	2	2.86895	2.913405	2.95786	0.00177945	0.00138212	0.0172974	0.0149186
chr5	10258221	10258303	5874598	0	+	0.512195	(0.49,0.53]	chr5	461868	2	CDS	CDS:UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1:ENST00000514674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	53	2	2.54558	2.9132800000000003	3.28098	0.0024326	3.89192e-5	0.0228485	8.42006e-4
chr17	58089974	58090074	16287300	0	+	0.42	(0.39,0.42]	chr17	1320910	8	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	16	107	2	2.48743	2.913235	3.33904	1.46016e-4	1.77874e-7	0.00244998	1.03637e-5
chr1	1218768	1218847	826383	0	-	0.620253	(0.59,1]	chr1	81966	1	CDS	CDS:EXON_MRNA	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000478938.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	56	2	2.69477	2.913085	3.1314	0.020208	6.69043e-4	0.0978331	0.00820018
chr11	63759191	63759291	11976860	0	+	0.37	(0.36,0.39]	chr11	918385	9	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.82481	2.91298	3.00115	0.0012486	6.14057e-4	0.0137762	0.00765639
chr3	136152370	136152464	4469326	0	-	0.425532	(0.42,0.455]	chr3	371336	13	CDS	CDS:EXON_MRNA	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.36247	2.91298	3.46349	0.0462889	9.0025e-4	0.176878	0.0102618
chr3	10126891	10126991	3302355	0	+	0.39	(0.36,0.39]	chr3	290648	7	UTR3	UTR3:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	1.85874	2.912955	3.96717	0.0415243	6.17763e-5	0.164804	0.00122919
chr22	28795174	28795274	18464268	0	-	0.46	(0.455,0.49]	chr22	1574927	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	XBP1	ENSG00000100219.16	ENST00000216037.10:ENST00000403532.7:ENST00000484256.1:ENST00000611155.4:ENST00000405219.7:ENST00000344347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.33278	2.9129199999999997	3.49306	0.00314029	6.07633e-5	0.0276877	0.00121305
chr18	35710752	35710851	16824748	0	+	0.323232	(0.29,0.33]	chr18	1387498	11	UTR3	UTR3:EXON_MRNA	GALNT1	ENSG00000141429.14	ENST00000269195.6	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.17855	2.91282	3.64709	0.0183673	3.76873e-4	0.0928041	0.00523508
chr7	76329278	76329377	8863408	0	-	0.424242	(0.42,0.455]	chr7	677476	26	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	2.32442	2.9127099999999997	3.501	0.00182252	8.62752e-6	0.0183913	2.43605e-4
chr16	88519934	88520034	15805871	0	+	0.51	(0.49,0.53]	chr16	1257865	34	INTRON	INTRON	ZFPM1	ENSG00000179588.9	ENST00000319555.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.13501	2.91269	3.69037	0.0287874	0.0226513	0.128869	0.10505
chr19	13959811	13959895	17241403	0	+	0.511905	(0.49,0.53]	chr19	1421635	4	CDS	CDS:EXON_MRNA	DCAF15	ENSG00000132017.10	ENST00000254337.10:ENST00000585468.1:ENST00000587307.1:ENST00000588523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.13501	2.91269	3.69037	0.0287874	0.0226513	0.128869	0.10505
chr16	69693242	69693342	15725287	0	+	0.44	(0.42,0.455]	chr16	1252127	16	CDS	CDS:UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.19674	2.91265	3.62856	0.0254904	4.02604e-4	0.117089	0.00549837
chr19	46609823	46609919	17357589	0	+	0.5625	(0.53,0.59]	chr19	1440686	8	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000599839.5:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	93	2	2.42758	2.912315	3.39705	1.10612e-4	1.10308e-4	0.00211768	0.00196871
chr5	91370805	91370904	6695317	0	-	0.383838	(0.36,0.39]	chr5	516141	23	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	54	2	2.9102	2.91226	2.91432	5.15161e-4	4.97991e-5	0.00719513	0.00102381
chr1	36286547	36286637	141538	0	+	0.555556	(0.53,0.59]	chr1	17556	3	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	56	2	2.4274	2.9122250000000003	3.39705	0.00178327	1.10308e-4	0.017318	0.00211768
chr8	30785989	30786070	9782387	0	-	0.358025	(0.33,0.36]	chr8	739785	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	PPP2CB	ENSG00000104695.13	ENST00000523023.1:ENST00000221138.9:ENST00000518564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	2.57153	2.912125	3.25272	0.00330025	2.63256e-4	0.028478	0.00393206
chr1	39461959	39462037	149810	0	+	0.435897	(0.42,0.455]	chr1	18665	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MACF1	ENSG00000127603.31	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.5:ENST00000671089.1:ENST00000372925.6:ENST00000289893.8:ENST00000683517.1:ENST00000360115.8:ENST00000497964.1:ENST00000446276.5:ENST00000442046.5:ENST00000422234.2:ENST00000462496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr1	153645269	153645363	478437	0	+	0.425532	(0.42,0.455]	chr1	49171	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000495554.1:ENST00000403433.5:ENST00000368687.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr1	182884679	182884746	595163	0	+	0.447761	(0.42,0.455]	chr1	61673	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000485081.5:ENST00000473076.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr11	75405837	75405934	12023114	0	+	0.43299	(0.42,0.455]	chr11	926994	11	UTR3	UTR3:EXON_MRNA:INTRON	RPS3	ENSG00000149273.15	ENST00000531188.6:ENST00000422465.6:ENST00000527446.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr11	125572457	125572527	12194080	0	+	0.442857	(0.42,0.455]	chr11	940616	1	UTR5	UTR5:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000529812.5:ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000524723.5:ENST00000278903.11:ENST00000531636.5:ENST00000527842.6:ENST00000529765.5:ENST00000527235.6:ENST00000527520.6:ENST00000527131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr12	48071666	48071721	13319350	0	-	0.436364	(0.42,0.455]	chr12	1044648	1	CDS	CDS:UTR3:EXON_MRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr14	50665530	50665619	14622167	0	-	0.426966	(0.42,0.455]	chr14	1145187	5	CDS	CDS:EXON_MRNA	SAV1	ENSG00000151748.15	ENST00000324679.5:ENST00000556735.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr15	65731641	65731700	15347737	0	-	0.423729	(0.42,0.455]	chr15	1212198	1	CDS	CDS:EXON_MRNA	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr17	15514727	15514826	16456769	0	-	0.444444	(0.42,0.455]	chr17	1343297	74	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr19	18170341	18170436	17257632	0	+	0.442105	(0.42,0.455]	chr19	1425212	12	UTR3	UTR3:EXON_MRNA	AC007192.4:PIK3R2	ENSG00000268173.3:ENSG00000105647.19	ENST00000593731.1:ENST00000222254.13:ENST00000617130.5:ENST00000617642.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr22	49580915	49581015	18543675	0	-	0.44	(0.42,0.455]	chr22	1583956	56	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr4	25718352	25718443	5361814	0	-	0.450549	(0.42,0.455]	chr4	430105	4	EXON_PSEUDO	EXON_PSEUDO	MTND4P9	ENSG00000250050.1	ENST00000507819.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr6	33276328	33276390	7121556	0	+	0.435484	(0.42,0.455]	chr6	547510	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1:ENST00000479802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr6	80069016	80069114	7808360	0	-	0.438776	(0.42,0.455]	chr6	598289	49	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-296E7.3:RP11-296E7.1	ENSG00000288071.1:ENSG00000218418.2	ENST00000670267.1:ENST00000401578.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr6	87514956	87515020	7827176	0	-	0.453125	(0.42,0.455]	chr6	599728	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RARS2	ENSG00000146282.18	ENST00000369536.10:ENST00000493269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	11	2	2.36247	2.91208	3.46169	0.0462889	0.03884	0.176878	0.149227
chr5	141516368	141516464	6875036	0	-	0.458333	(0.455,0.49]	chr5	526351	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	40	2	2.65352	2.91204	3.17056	0.00143499	4.1243e-4	0.0147046	0.00604953
chr11	9384763	9384847	11792248	0	+	0.642857	(0.59,1]	chr11	902795	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000630083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.42639	2.911445	3.3965	0.0409084	1.83913e-4	0.163285	0.00296795
chr1	149887074	149887169	464896	0	+	0.705263	(0.59,1]	chr1	46815	1	CDS	CDS:EXON_MRNA	H2AC20	ENSG00000184260.6	ENST00000331380.4	protein_coding	protein_coding	protein_coding	protein_coding	16	251	2	2.86863	2.911415	2.9542	4.37922e-5	1.46565e-5	9.21269e-4	4.12691e-4
chr17	1680725	1680778	16401616	0	-	0.45283	(0.42,0.455]	chr17	1334965	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000574728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	77	2	2.11744	2.91127	3.7051	0.00497755	3.77638e-7	0.0381953	1.73699e-5
chr1	28035543	28035611	911904	0	-	0.5	(0.49,0.53]	chr1	95381	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5:ENST00000468665.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.38097	2.911235	3.4415	0.0425419	9.98297e-4	0.167547	0.0111246
chr10	79312649	79312749	11148573	0	+	0.51	(0.49,0.53]	chr10	847408	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.38097	2.911235	3.4415	0.0425419	9.98297e-4	0.167547	0.0111246
chr14	94052997	94053062	14775160	0	-	0.507692	(0.49,0.53]	chr14	1157276	1	CDS	CDS:EXON_MRNA:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000553451.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1:ENST00000556635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	2.38097	2.911235	3.4415	0.0425419	9.98297e-4	0.167547	0.0111246
chr20	50893250	50893347	18006315	0	-	0.350515	(0.33,0.36]	chr20	1526243	19	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.07736	2.91119	3.74502	0.0442037	2.19782e-4	0.172163	0.00339463
chr5	179698905	179699001	6414129	0	+	0.760417	(0.59,1]	chr5	499107	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	105	2	2.50608	2.911125	3.31617	8.51206e-4	3.02114e-4	0.00993677	0.00472028
chr8	47826655	47826723	9816025	0	-	0.632353	(0.59,1]	chr8	742585	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.63214	2.91107	3.19	0.005622	0.0039188	0.0421873	0.0314356
chr16	67876872	67876972	15712299	0	+	0.48	(0.455,0.49]	chr16	1250724	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EDC4	ENSG00000038358.15	ENST00000358933.10:ENST00000572221.5:ENST00000536072.6:ENST00000574770.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.69344	2.910935	3.12843	0.0176068	0.00392855	0.0925619	0.0322851
chr2	195728253	195728349	2290855	0	+	0.458333	(0.455,0.49]	chr2	207628	2	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.69344	2.910935	3.12843	0.0176068	0.00392855	0.0925619	0.0322851
chr1	67258477	67258568	264120	0	+	0.340659	(0.33,0.36]	chr1	29505	1	CDS	CDS:UTR3:EXON_MRNA	IL23R	ENSG00000162594.16	ENST00000637002.1:ENST00000347310.10:ENST00000425614.3:ENST00000473881.2:ENST00000395227.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	40	2	2.57153	2.91093	3.25033	0.00330025	4.9864e-5	0.028478	0.0010249
chr17	16382105	16382203	16141808	0	+	0.581633	(0.53,0.59]	chr17	1300658	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBB	ENSG00000170315.14	ENST00000577640.1:ENST00000302182.8:ENST00000535788.1:ENST00000578649.1:ENST00000395839.5:ENST00000395837.1:ENST00000614404.1:ENST00000578706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	268	2	2.66641	2.910905	3.1554	5.46258e-6	8.29385e-8	1.66402e-4	5.29612e-6
chr19	6751394	6751462	17213703	0	+	0.470588	(0.455,0.49]	chr19	1415998	2	UTR3	UTR3:EXON_MRNA	TRIP10	ENSG00000125733.18	ENST00000600428.5:ENST00000313244.14:ENST00000313285.12:ENST00000600677.5:ENST00000595305.5:ENST00000596758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.61991	2.9109	4.20189	0.0447186	0.00397662	0.166115	0.0322851
chr1	26277955	26278050	108897	0	+	0.505263	(0.49,0.53]	chr1	12966	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	2.21702	2.91089	3.60476	0.00959574	4.52633e-4	0.0603269	0.00642319
chr20	32849714	32849813	17755870	0	+	0.545455	(0.53,0.59]	chr20	1498956	11	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	2.37663	2.91086	3.44509	0.00121282	8.31409e-5	0.012983	0.00171126
chr11	14510871	14510942	12282115	0	-	0.464789	(0.455,0.49]	chr11	949708	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000524606.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1:ENST00000531023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	90	2	2.63306	2.91079	3.18852	7.41674e-5	2.4104e-5	0.00156055	5.6648e-4
chr11	47420630	47420727	12386569	0	-	0.56701	(0.53,0.59]	chr11	956851	1	CDS	CDS:EXON_MRNA	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.65775	2.91079	4.16383	0.0573191	0.00659193	0.196623	0.0454205
chr19	48913103	48913196	17367749	0	+	0.612903	(0.59,1]	chr19	1442130	2	CDS	CDS:EXON_MRNA:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	138	2	2.19708	2.9107450000000004	3.62441	0.00253044	1.0099e-5	0.0233955	2.79298e-4
chr5	134620932	134620992	6846530	0	-	0.416667	(0.39,0.42]	chr5	523891	1	CDS	CDS:UTR5:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000439578.5:ENST00000503318.5:ENST00000505758.5:ENST00000502286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.70591	2.9107	3.11549	0.0185716	0.00403491	0.0932453	0.032143
chr7	73206434	73206528	8331586	0	+	0.393617	(0.39,0.42]	chr7	634360	4	EXON_LNCRNA	EXON_LNCRNA	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	19	2	2.70591	2.9107	3.11549	0.0185716	0.00403491	0.0932453	0.032143
chr9	33056175	33056239	10631273	0	-	0.390625	(0.39,0.42]	chr9	803383	2	CDS	CDS:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.70591	2.9107	3.11549	0.0185716	0.00403491	0.0932453	0.032143
chr22	36516477	36516542	18499652	0	-	0.507692	(0.49,0.53]	chr22	1578423	1	CDS	CDS:UTR3:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1:ENST00000462794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.38097	2.91044	3.43991	0.0425419	8.40266e-5	0.167547	0.00158427
chr17	68044324	68044360	16333826	0	+	0.444444	(0.42,0.455]	chr17	1325132	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	46	2	2.47379	2.910375	3.34696	0.00996858	2.50958e-5	0.0621728	5.82876e-4
chr5	150710857	150710954	6914734	0	-	0.494845	(0.49,0.53]	chr5	529276	26	UTR3	UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5:ENST00000446090.6:ENST00000627368.2	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.21413	2.91033	3.60653	0.00995539	4.50981e-4	0.0621728	0.00605268
chr6	147221857	147221957	7466606	0	+	0.38	(0.36,0.39]	chr6	571137	154	INTRON	INTRON	STXBP5	ENSG00000164506.14	ENST00000367481.7:ENST00000546097.5:ENST00000321680.10:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.88918	2.91027	2.93136	0.00811967	0.00212816	0.0528637	0.0206577
chr14	21210029	21210128	14520506	0	-	0.333333	(0.33,0.36]	chr14	1137229	10	UTR3	UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.57153	2.91026	3.24899	0.00330025	1.31723e-5	0.028478	3.45454e-4
chr14	69394824	69394912	14687648	0	-	0.465909	(0.455,0.49]	chr14	1150271	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6:ENST00000557697.1:ENST00000555373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.35644	2.910165	3.46389	0.00555877	9.14164e-4	0.0405952	0.0110519
chrX	155277603	155277702	19283290	0	-	0.393939	(0.39,0.42]	chrX	1639082	15	UTR3	UTR3:EXON_MRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	2.9052	2.91014	2.91508	4.41174e-4	2.43771e-5	0.0062930699999999996	5.71478e-4
chr4	26432479	26432578	4766695	0	+	0.444444	(0.42,0.455]	chr4	394281	16	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	10	74	2	2.89978	2.910045	2.92031	5.81698e-5	4.70001e-5	0.00128763	9.75983e-4
chr12	123295507	123295607	13595073	0	-	0.42	(0.39,0.42]	chr12	1070977	65	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.149	2.909915	3.67083	0.0149155	1.93844e-5	0.0812412	4.72961e-4
chr10	60785663	60785725	11063599	0	+	0.403226	(0.39,0.42]	chr10	841939	1	CDS	CDS:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	52	2	2.43198	2.90968	3.38738	5.29754e-4	1.35138e-4	0.00680417	0.0025017
chr19	36150245	36150313	17308846	0	+	0.602941	(0.59,1]	chr19	1432257	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000588815.5:ENST00000629983.2:ENST00000590049.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	4	70	2	2.58269	2.9096450000000003	3.2366	0.0067313	4.06803e-4	0.0461258	0.00552995
chr3	179779541	179779641	3930537	0	+	0.52	(0.49,0.53]	chr3	330479	66	INTRON	INTRON	RP11-15L13.5:USP13	ENSG00000288698.1:ENSG00000058056.10	ENST00000680408.1:ENST00000680587.1:ENST00000263966.8:ENST00000680008.1:ENST00000496897.5:ENST00000679972.1:ENST00000679752.1:ENST00000681783.1:ENST00000681362.1:ENST00000680843.1:ENST00000681262.1:ENST00000679407.1:ENST00000679839.1:ENST00000679769.1:ENST00000679664.1:ENST00000680567.1:ENST00000680392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	172	2	2.49951	2.90937	3.31923	6.34138e-5	5.22891e-8	0.00136069	3.20836e-6
chr8	120419851	120419938	10047760	0	-	0.367816	(0.36,0.39]	chr8	756178	1	CDS	CDS:UTR3:EXON_MRNA	MRPL13	ENSG00000172172.8	ENST00000518696.5:ENST00000306185.8:ENST00000518918.1:ENST00000520677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.63521	2.909345	3.18348	0.00633242	0.00310315	0.0446708	0.0263402
chr15	29710915	29711000	15183885	0	-	0.552941	(0.53,0.59]	chr15	1195099	2	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.35511	2.9093	3.46349	0.0445399	9.2216e-4	0.172163	0.0104432
chr19	49782530	49782627	17372606	0	+	0.546392	(0.53,0.59]	chr19	1443680	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	26	2	2.35511	2.9093	3.46349	0.0445399	9.2216e-4	0.172163	0.0104432
chr6	44151845	44151926	7161012	0	+	0.567901	(0.53,0.59]	chr6	553604	1	CDS	CDS:EXON_MRNA	TMEM63B	ENSG00000137216.19	ENST00000259746.13:ENST00000323267.11:ENST00000371893.6:ENST00000533121.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	26	2	2.35511	2.9093	3.46349	0.0445399	9.2216e-4	0.172163	0.0104432
chr17	59694240	59694337	16295600	0	+	0.350515	(0.33,0.36]	chr17	1321774	5	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	156	2	2.8612	2.90917	2.95714	3.6151e-6	2.40542e-7	1.29307e-4	1.18499e-5
chr1	8861089	8861179	852362	0	-	0.488889	(0.455,0.49]	chr1	85899	2	UTR3	UTR3:EXON_MRNA	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	354	2	2.90247	2.90916	2.91585	1.856e-7	5.62063e-8	1.07114e-5	3.40263e-6
chr1	1052401	1052497	2418	0	+	0.5	(0.49,0.53]	chr1	579	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.48488	2.90906	3.33324	0.032052	0.00162947	0.133433	0.0169972
chr17	44872507	44872570	16560143	0	-	0.507937	(0.49,0.53]	chr17	1359767	2	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000591856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.48488	2.90906	3.33324	0.032052	0.00162947	0.133433	0.0169972
chr9	126884785	126884885	10468606	0	+	0.29	[0,0.29]	chr9	788451	40	UTR3	UTR3:EXON_MRNA	ZBTB34	ENSG00000177125.5	ENST00000319119.4:ENST00000373452.2	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.33679	2.9089650000000002	3.48114	0.00335866	1.59721e-4	0.0280262	0.00286408
chr8	23566265	23566365	9230656	0	+	0.42	(0.39,0.42]	chr8	706547	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	160	2	2.27869	2.9086800000000004	3.53867	4.50417e-4	5.52077e-9	0.00641134	4.65241e-7
chr9	37588505	37588598	10645861	0	-	0.408602	(0.39,0.42]	chr9	805786	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-613M10.8:TOMM5:RP11-613M10.9	ENSG00000256966.6:ENSG00000175768.13:ENSG00000255872.3	ENST00000541804.1:ENST00000544475.5:ENST00000537239.2:ENST00000540941.1:ENST00000540557.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	67	2	2.87247	2.9085	2.94453	1.58014e-4	2.10841e-5	0.00261731	5.6023e-4
chr1	160997386	160997485	1331412	0	-	0.515152	(0.49,0.53]	chr1	136426	23	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.56183	2.9084849999999998	3.25514	0.0261296	0.00227467	0.118976	0.0209546
chr18	32412501	32412598	17064959	0	-	0.515464	(0.49,0.53]	chr18	1402366	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	GAREM1:HNRNPA1P7	ENSG00000141441.16:ENSG00000215492.6	ENST00000269209.7:ENST00000399218.8:ENST00000521273.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	22	2	2.56183	2.9084849999999998	3.25514	0.0261296	0.00227467	0.118976	0.0209546
chr4	82871932	82872009	5496981	0	-	0.506494	(0.49,0.53]	chr4	440289	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6:ENST00000503058.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.56183	2.9084849999999998	3.25514	0.0261296	0.00227467	0.118976	0.0209546
chr3	195516500	195516598	4660204	0	-	0.285714	[0,0.29]	chr3	385038	22	UTR3	UTR3:EXON_MRNA	PPP1R2	ENSG00000184203.8	ENST00000618156.5:ENST00000418939.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.82443	2.9082749999999997	2.99212	0.0180803	0.0069187	0.0920398	0.0473262
chr5	97032224	97032324	6118913	0	+	0.28	[0,0.29]	chr5	478869	38	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.82443	2.9082749999999997	2.99212	0.0180803	0.0069187	0.0920398	0.0473262
chr7	131661951	131662047	9070167	0	-	0.447917	(0.42,0.455]	chr7	692784	1	EXON_PSEUDO	EXON_PSEUDO	EEF1B2P6	ENSG00000213261.3	ENST00000445713.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	51	2	2.42938	2.90821	3.38704	0.0045028	1.91222e-5	0.0349711	4.67807e-4
chr10	1042690	1042762	11338993	0	-	0.458333	(0.455,0.49]	chr10	864664	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IDI1	ENSG00000067064.12	ENST00000429642.2:ENST00000381344.8:ENST00000491735.1:ENST00000427898.5:ENST00000482091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	31	2	2.61558	2.9081349999999997	3.20069	0.00285821	0.00184897	0.0245841	0.0185736
chr19	35157432	35157524	17303766	0	+	0.51087	(0.49,0.53]	chr19	1430597	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392218.6:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	106	2	2.57632	2.90813	3.23994	5.33611e-5	4.65215e-6	0.00108426	1.6128e-4
chrX	20151007	20151107	18985588	0	-	0.3	(0.29,0.33]	chrX	1616690	12	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.49936	2.907945	3.31653	0.00917022	0.00261621	0.0580029	0.0238929
chr5	95755395	95755413	6108093	0	+	0.277778	[0,0.29]	chr5	478226	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.82443	2.907935	2.99144	0.0180803	0.00112713	0.0920398	0.0122637
chr1	150575868	150575968	1288936	0	-	0.33	(0.29,0.33]	chr1	128249	18	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	46	2	2.52991	2.90768	3.28545	5.8581e-4	4.11768e-5	0.00794081	8.82748e-4
chr5	80650086	80650183	6667596	0	-	0.494845	(0.49,0.53]	chr5	514741	1	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	255	1935	2	2.51706	2.907655	3.29825	2.14334e-7	8.72404e-11	1.20833e-5	1.2035e-8
chr6	43524470	43524552	7708081	0	-	0.52439	(0.49,0.53]	chr6	591461	1	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2:ENST00000488195.6:ENST00000455285.2:ENST00000486936.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	39	2	2.48202	2.90763	3.33324	0.00162947	0.00138956	0.0169972	0.0143689
chr12	56739293	56739363	13352758	0	-	0.428571	(0.42,0.455]	chr12	1051892	1	CDS	CDS:UTR3:EXON_MRNA	RP11-112B10.2:PRIM1	ENSG00000285625.1:ENSG00000198056.15	ENST00000647707.1:ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000549549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.7523	2.907615	3.06293	0.0153283	0.00492128	0.0828908	0.0366648
chr5	112902448	112902518	6767605	0	-	0.428571	(0.42,0.455]	chr5	519441	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	REEP5	ENSG00000129625.13	ENST00000379638.9:ENST00000513339.5:ENST00000497856.6:ENST00000511865.6:ENST00000261482.8:ENST00000504247.1:ENST00000474542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.7523	2.907615	3.06293	0.0153283	0.00492128	0.0828908	0.0366648
chr6	143502354	143502424	8005310	0	-	0.442857	(0.42,0.455]	chr6	611757	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.7523	2.907615	3.06293	0.0153283	0.00492128	0.0828908	0.0366648
chr6	159775169	159775241	7526899	0	+	0.430556	(0.42,0.455]	chr6	574531	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACAT2	ENSG00000120437.9	ENST00000367048.5:ENST00000467951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.7523	2.907615	3.06293	0.0153283	0.00492128	0.0828908	0.0366648
chr8	100946482	100946582	9976485	0	-	0.44	(0.42,0.455]	chr8	752754	116	INTRON	INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000522542.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.7523	2.907615	3.06293	0.0153283	0.00492128	0.0828908	0.0366648
chr4	3512973	3513036	5285643	0	-	0.571429	(0.53,0.59]	chr4	425789	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	40	2	1.78041	2.90747	4.03453	0.0407112	4.6e-5	0.163285	9.56296e-4
chr1	89935148	89935247	349115	0	+	0.363636	(0.36,0.39]	chr1	34169	21	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.63115	2.9073149999999996	3.18348	0.0245975	0.00310315	0.114841	0.0263402
chr12	70353915	70354013	12947249	0	+	0.367347	(0.36,0.39]	chr12	1009401	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000550641.6:ENST00000229195.8:ENST00000551483.5:ENST00000546673.5:ENST00000549709.5:ENST00000550705.1:ENST00000549705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.63115	2.9073149999999996	3.18348	0.0245975	0.00310315	0.114841	0.0263402
chr16	47158931	47158990	15929640	0	-	0.38983	(0.36,0.39]	chr16	1277730	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	2.63115	2.9073149999999996	3.18348	0.0245975	0.00310315	0.114841	0.0263402
chr17	32225015	32225110	16199277	0	+	0.389474	(0.36,0.39]	chr17	1308042	4	UTR3	UTR3:EXON_MRNA:INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.63115	2.9073149999999996	3.18348	0.0245975	0.00310315	0.114841	0.0263402
chr5	62385668	62385767	5993800	0	+	0.363636	(0.36,0.39]	chr5	469639	2	UTR3	UTR3:EXON_MRNA:INTRON	KIF2A:RP11-95I19.4	ENSG00000068796.19:ENSG00000288643.1	ENST00000401507.7:ENST00000509663.2:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000506857.5:ENST00000674752.1:ENST00000675534.1:ENST00000675387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.63115	2.9073149999999996	3.18348	0.0245975	0.00310315	0.114841	0.0263402
chr17	62033885	62033984	16629145	0	-	0.373737	(0.36,0.39]	chr17	1366952	2	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.38564	2.9072750000000003	3.42891	0.0476159	9.14064e-5	0.17993	0.0016849
chr17	1675245	1675339	16401540	0	-	0.5	(0.49,0.53]	chr17	1334914	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000576958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	2.60116	2.907165	3.21317	0.0056515	3.08783e-4	0.0422191	0.00445935
chr21	42844374	42844473	18270799	0	-	0.343434	(0.33,0.36]	chr21	1549336	7	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.97842	2.90714	3.83586	0.0469469	1.7178e-4	0.171977	0.00302124
chr5	32309661	32309714	5924511	0	+	0.396226	(0.39,0.42]	chr5	464145	1	EXON_SMALL	EXON_SMALL	RNU6-378P	ENSG00000207052.1	ENST00000384324.1	snRNA	snRNA	snRNA	snRNA	12	82	2	2.09861	2.90711	3.71561	0.00181226	3.35016e-7	0.0183913	1.575e-5
chr1	160309100	160309176	1328886	0	-	0.447368	(0.42,0.455]	chr1	136057	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1:ENST00000481040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	2.59462	2.9071	3.21958	0.0062772	5.79033e-5	0.0445415	0.00116556
chr7	140720321	140720420	9109880	0	-	0.40404	(0.39,0.42]	chr7	695266	11	UTR3	UTR3:EXON_MRNA	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.5823	2.90702	3.23174	0.00246531	2.82122e-4	0.0230262	0.00415762
chr7	5593402	5593493	8111993	0	+	0.736264	(0.59,1]	chr7	620013	5	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.84259	2.906885	3.97118	0.011062	1.3379e-4	0.0653511	0.00229039
chr11	119044742	119044835	12626410	0	-	0.580645	(0.53,0.59]	chr11	979738	7	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.68432	2.9068750000000003	3.12943	0.00118971	4.81557e-4	0.0128045	0.00677016
chr17	80542202	80542282	16373847	0	+	0.55	(0.53,0.59]	chr17	1331037	1	EXON_PSEUDO	EXON_PSEUDO	RPL32P31	ENSG00000213128.3	ENST00000471666.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	25	2	2.515	2.9068750000000003	3.29875	0.0292633	0.00191422	0.129773	0.018324
chr20	38951832	38951930	17787108	0	+	0.561224	(0.53,0.59]	chr20	1503189	4	CDS	CDS:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	2	25	2	2.515	2.9068750000000003	3.29875	0.0292633	0.00191422	0.129773	0.018324
chr9	7478123	7478221	10545931	0	-	0.510204	(0.49,0.53]	chr9	799719	12	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	30	2	1.99044	2.90687	3.8233	0.0435903	1.44192e-4	0.170594	0.00242438
chr13	46127098	46127196	14009611	0	-	0.561224	(0.53,0.59]	chr13	1098488	13	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	9	81	2	2.23281	2.906835	3.58086	0.00154317	5.24546e-6	0.0164318	1.60997e-4
chr8	100919897	100919997	9976215	0	-	0.3	(0.29,0.33]	chr8	752728	35	UTR3	UTR3:EXON_MRNA:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	48	2	2.28665	2.90679	3.52693	0.0022585	7.50057e-6	0.0214524	2.17987e-4
chr6	31669096	31669172	7116078	0	+	0.473684	(0.455,0.49]	chr6	545968	1	CDS	CDS:UTR3:EXON_MRNA	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2:ENST00000409691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	68	2	2.64386	2.906565	3.16927	2.93041e-4	2.24921e-5	0.00464297	5.35456e-4
chr1	225920261	225920357	1531283	0	-	0.458333	(0.455,0.49]	chr1	153169	5	UTR3	UTR3:EXON_MRNA:INTRON	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	52	2	2.64241	2.906485	3.17056	4.1243e-4	2.78671e-4	0.00604953	0.00412347
chr12	95513904	95514000	13025186	0	+	0.364583	(0.36,0.39]	chr12	1014031	1	UTR3	UTR3:EXON_MRNA	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	64	2	2.55738	2.9064750000000004	3.25557	0.0013225	4.10744e-6	0.0144203	1.31763e-4
chr6	26199558	26199658	7101571	0	+	0.55	(0.53,0.59]	chr6	542849	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC7	ENSG00000277224.2	ENST00000356530.5	protein_coding	protein_coding	protein_coding	protein_coding	8	80	2	2.62668	2.90646	3.18624	0.00157636	7.60016e-6	0.015761	2.40598e-4
chr19	49827548	49827648	17372984	0	+	0.48	(0.455,0.49]	chr19	1443774	77	INTRON	INTRON	MED25	ENSG00000104973.19	ENST00000593767.3:ENST00000312865.10:ENST00000538643.5:ENST00000595185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.50904	2.90644	3.30384	0.0310515	0.00184955	0.131262	0.0178046
chr3	47046553	47046621	4158846	0	-	0.470588	(0.455,0.49]	chr3	347823	2	CDS	CDS:UTR3:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000445387.5:ENST00000479832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.50904	2.90644	3.30384	0.0310515	0.00184955	0.131262	0.0178046
chr20	16731702	16731766	17714122	0	+	0.25	[0,0.29]	chr20	1495169	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SNRPB2	ENSG00000125870.11	ENST00000377943.9:ENST00000246071.8:ENST00000478522.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	10	2	2.15488	2.90639	3.6579	0.0436536	0.0197988	0.170594	0.0983378
chr9	137836029	137836127	10518302	0	+	0.27551	[0,0.29]	chr9	797759	12	UTR3	UTR3:EXON_MRNA:INTRON	EHMT1	ENSG00000181090.21	ENST00000460843.6:ENST00000637161.1:ENST00000462942.3:ENST00000637748.1:ENST00000475564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	10	2	2.15488	2.90639	3.6579	0.0436536	0.0197988	0.170594	0.0983378
chr5	34832028	34832125	5929883	0	+	0.371134	(0.36,0.39]	chr5	464654	14	UTR3	UTR3:EXON_MRNA	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000428746.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.62565	2.906035	3.18642	0.0219469	0.00359152	0.103959	0.0302391
chr12	51060028	51060127	12876171	0	+	0.414141	(0.39,0.42]	chr12	1000594	7	UTR3	UTR3:EXON_MRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000552645.5:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC	5	43	2	2.48908	2.9059299999999997	3.32278	0.0101318	2.95704e-5	0.0626311	6.70125e-4
chr6	143165132	143165183	7445938	0	+	0.490196	(0.49,0.53]	chr6	569862	2	CDS	CDS:EXON_MRNA	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.38204	2.9057899999999997	3.42954	0.0049129	0.00105489	0.0366648	0.0123035
chr10	17235293	17235393	10938835	0	+	0.51	(0.49,0.53]	chr10	833004	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	146	2	2.83877	2.905635	2.9725	4.23064e-6	3.47752e-6	1.4819e-4	1.13791e-4
chr10	997207	997257	10898661	0	+	0.5	(0.49,0.53]	chr10	829332	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000360059.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	29	2	2.8671	2.905565	2.94403	0.0100489	0.00122634	0.0623334	0.0130695
chr1	32773382	32773482	130808	0	+	0.55	(0.53,0.59]	chr1	16163	6	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.26097	2.90549	3.55001	0.00389622	6.11776e-4	0.0313006	0.00818575
chr1	1752706	1752804	829358	0	-	0.418367	(0.39,0.42]	chr1	82839	16	UTR3	UTR3:EXON_MRNA	NADK	ENSG00000008130.15	ENST00000378625.5:ENST00000341991.7:ENST00000341426.9:ENST00000342348.9	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.87119	2.90547	3.93975	0.0373134	0.0105893	0.152293	0.0644466
chr20	1369072	1369168	17875160	0	-	0.510417	(0.49,0.53]	chr20	1512311	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	213	2	2.52786	2.90547	3.28308	1.10429e-5	4.91217e-8	3.28475e-4	3.03376e-6
chr19	10652059	10652158	17460794	0	-	0.373737	(0.36,0.39]	chr19	1461202	3	EXON_LNCRNA	EXON_LNCRNA	ILF3-DT	ENSG00000267100.1	ENST00000591501.1	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	2.78659	2.90528	3.02397	0.0132982	0.00674398	0.0740932	0.0461258
chr3	53225755	53225855	4188984	0	-	0.56	(0.53,0.59]	chr3	353771	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	56	2	2.62309	2.90508	3.18707	0.00065129300000000005	3.55681e-4	0.00805846	0.00539248
chr1	151399687	151399727	471567	0	+	0.6	(0.59,1]	chr1	48184	1	CDS	CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	1.96416	2.904865	3.84557	0.044741	0.0410704	0.166115	0.163285
chr19	2430223	2430321	17423111	0	-	0.591837	(0.59,1]	chr19	1453517	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LMNB2	ENSG00000176619.13	ENST00000532465.1:ENST00000325327.4:ENST00000475819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	1.96416	2.904865	3.84557	0.044741	0.0410704	0.166115	0.163285
chr19	5206448	5206529	17434920	0	-	0.592593	(0.59,1]	chr19	1455625	2	UTR3	UTR3:EXON_MRNA:INTRON	PTPRS	ENSG00000105426.17	ENST00000588552.5:ENST00000587303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	1.96416	2.904865	3.84557	0.044741	0.0410704	0.166115	0.163285
chr12	49032867	49032967	13323305	0	-	0.54	(0.53,0.59]	chr12	1045457	18	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.78899	2.9047650000000003	3.02054	0.00577011	0.00245784	0.0426551	0.0221765
chr17	1659356	1659452	16401362	0	-	0.53125	(0.53,0.59]	chr17	1334868	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.78899	2.9047650000000003	3.02054	0.00577011	0.00245784	0.0426551	0.0221765
chr15	60347529	60347629	15316693	0	-	0.57	(0.53,0.59]	chr15	1208909	5	UTR3	UTR3:EXON_MRNA	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	49	2	2.57867	2.90476	3.2308500000000002	0.00198261	2.81517e-4	0.0195088	0.00415519
chr15	78897164	78897261	15042656	0	+	0.237113	[0,0.29]	chr15	1183475	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000559345.5:ENST00000561171.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.15488	2.9046149999999997	3.65435	0.0436536	2.35911e-5	0.170594	5.58e-4
chr16	88727556	88727608	16074548	0	-	0.576923	(0.53,0.59]	chr16	1291698	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000491917.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	39	2	1.88327	2.9045	3.92573	0.0298124	8.62301e-5	0.129773	0.00160749
chr12	6922109	6922164	12715485	0	+	0.581818	(0.53,0.59]	chr12	987268	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000538763.5:ENST00000545045.6:ENST00000535366.5:ENST00000535275.5:ENST00000543975.1:ENST00000534977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	24	2	2.89916	2.90447	2.90978	0.00890406	0.00857883	0.0565003	0.0552386
chr17	64499823	64499922	16639706	0	-	0.282828	[0,0.29]	chr17	1368473	17	UTR3	UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	48	2	2.51891	2.9043099999999997	3.28971	3.62294e-4	2.65693e-5	0.00507215	6.79268e-4
chr17	32367852	32367933	16200624	0	+	0.432099	(0.42,0.455]	chr17	1308187	2	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000584696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	117	2	2.14843	2.90428	3.66013	0.00271028	2.19882e-8	0.0244369	1.52858e-6
chr6	27893049	27893149	7649682	0	-	0.63	(0.59,1]	chr6	582848	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	H3C12:H2AC17	ENSG00000197153.5:ENSG00000278677.2	ENST00000479986.1:ENST00000359611.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	274	2	2.18771	2.90419	3.62067	0.00177174	2.46032e-7	0.0172666	1.36059e-5
chr10	69171155	69171212	11094664	0	+	0.333333	(0.33,0.36]	chr10	843466	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11:ENST00000490696.5:ENST00000489794.1:ENST00000497022.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.64851	2.904135	3.15976	0.00492353	0.00437542	0.0366648	0.0340502
chr1	145111796	145111896	446146	0	+	0.46	(0.455,0.49]	chr1	43866	3	UTR3	UTR3:EXON_MRNA	FAM72D	ENSG00000215784.6	ENST00000400889.3	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.26324	2.903925	3.54461	0.00868189	4.40117e-5	0.0558093	9.24938e-4
chr7	56052421	56052485	8290422	0	+	0.484375	(0.455,0.49]	chr7	631454	1	CDS	CDS:EXON_MRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.83859	2.9039200000000003	2.96925	0.00698725	0.00215336	0.0473262	0.0208395
chr2	167814946	167815041	2997776	0	-	0.536842	(0.53,0.59]	chr2	265435	3	EXON_LNCRNA	EXON_LNCRNA	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1	lncRNA	lncRNA	lncRNA	lncRNA	4	39	2	2.68432	2.90386	3.1234	0.00390623	0.00118971	0.0322851	0.0128045
chrX	19349936	19350023	18604844	0	+	0.528736	(0.49,0.53]	chrX	1589011	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000423505.5:ENST00000422285.7:ENST00000417819.5:ENST00000492364.1:ENST00000355808.9:ENST00000379805.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.72252	2.903695	3.08487	0.0161474	6.09273e-4	0.0860154	0.00760626
chr4	163932994	163933088	5204331	0	+	0.43617	(0.42,0.455]	chr4	420029	6	EXON_PSEUDO	EXON_PSEUDO	YWHAQP4	ENSG00000177803.7	ENST00000436268.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	38	2	2.61608	2.90343	3.19078	0.00310864	6.89843e-4	0.0274272	0.00842607
chr3	98593039	98593130	4319680	0	-	0.67033	(0.59,1]	chr3	360293	2	CDS	CDS:EXON_MRNA	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000513674.1:ENST00000515041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	2.11074	2.9034199999999997	3.6961	0.0305	3.68566e-5	0.130204	8.01958e-4
chr1	156727652	156727744	1316683	0	-	0.48913	(0.455,0.49]	chr1	133933	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ISG20L2	ENSG00000143319.17	ENST00000313146.10:ENST00000368219.2:ENST00000470713.1:ENST00000469074.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.40664	2.903365	3.40009	0.0123662	0.00120619	0.0705839	0.0129255
chr2	219213888	219213951	3191198	0	-	0.47619	(0.455,0.49]	chr2	280816	2	CDS	CDS:UTR3:EXON_MRNA	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000497882.5:ENST00000448398.5:ENST00000494639.5:ENST00000496984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.40664	2.903365	3.40009	0.0123662	0.00120619	0.0705839	0.0129255
chr20	33623580	33623672	17760382	0	+	0.456522	(0.455,0.49]	chr20	1499892	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CBFA2T2	ENSG00000078699.22	ENST00000342704.11:ENST00000375279.6:ENST00000344201.7:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5:ENST00000359606.3:ENST00000491618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.40664	2.903365	3.40009	0.0123662	0.00120619	0.0705839	0.0129255
chr20	3805251	3805347	17658707	0	+	0.552083	(0.53,0.59]	chr20	1492996	4	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	2.49112	2.903055	3.31499	0.00129901	3.217e-5	0.0142093	7.12922e-4
chr11	118590423	118590506	12159621	0	+	0.433735	(0.42,0.455]	chr11	937248	2	CDS	CDS:EXON_MRNA:INTRON	ARCN1	ENSG00000095139.14	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.89192	2.902825	2.91373	0.00892357	0.00157686	0.0567495	0.015761
chr3	150568175	150568233	3807805	0	+	0.448276	(0.42,0.455]	chr3	325023	1	CDS	CDS:UTR3:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000494558.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5:ENST00000472926.1:ENST00000465535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.34191	2.9027000000000003	3.46349	0.0159091	9.0025e-4	0.0854674	0.0102618
chr1	162581372	162581459	507763	0	+	0.413793	(0.39,0.42]	chr1	54793	2	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1:ENST00000474728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.49426	2.90268	3.3111	0.0085468	2.11919e-4	0.0551026	0.00357806
chr19	41353044	41353141	17568716	0	-	0.783505	(0.59,1]	chr19	1476913	1	UTR5	UTR5:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.23761	2.90259	3.56757	0.00314845	7.48524e-5	0.0277515	0.00142695
chr6	35556166	35556264	7130950	0	+	0.438776	(0.42,0.455]	chr6	549047	4	EXON_PSEUDO	EXON_PSEUDO	RP3-340B19.2	ENSG00000219023.1	ENST00000403958.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	148	2	2.83341	2.90224	2.97107	2.25234e-5	5.77243e-7	5.90626e-4	2.5036e-5
chr13	21168234	21168316	13925809	0	-	0.451219	(0.42,0.455]	chr13	1092492	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	SKA3	ENSG00000165480.16	ENST00000314759.6:ENST00000298260.8:ENST00000400018.7:ENST00000462482.1:ENST00000465471.5:ENST00000536239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.34191	2.9017999999999997	3.46169	0.03884	0.0159091	0.149227	0.0854674
chr6	42081099	42081198	7150827	0	+	0.424242	(0.42,0.455]	chr6	551772	37	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.16	ENST00000372982.8:ENST00000456846.6:ENST00000372977.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.34191	2.9017999999999997	3.46169	0.03884	0.0159091	0.149227	0.0854674
chr2	70676137	70676232	2726281	0	-	0.452632	(0.42,0.455]	chr2	242886	12	UTR3	UTR3:EXON_MRNA:INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6:ENST00000355733.7:ENST00000522886.5:ENST00000456320.7:ENST00000413157.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.95205	2.901775	3.8515	0.0248244	0.0119089	0.113644	0.0686664
chr6	124968295	124968394	7381169	0	+	0.444444	(0.42,0.455]	chr6	565858	45	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519971.1:ENST00000519565.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	1.95205	2.901775	3.8515	0.0248244	0.0119089	0.113644	0.0686664
chr5	140529701	140529796	6255133	0	+	0.505263	(0.49,0.53]	chr5	487634	17	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000475148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	2.21413	2.901695	3.58926	0.00995539	3.32125e-5	0.0621728	7.33555e-4
chr14	102015104	102015180	14495493	0	+	0.526316	(0.49,0.53]	chr14	1133112	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000645114.2:ENST00000643764.1:ENST00000644206.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	64	2	2.70962	2.90149	3.09336	1.8355e-4	1.28432e-4	0.00296537	0.00241206
chr1	235109729	235109826	1560069	0	-	0.319588	(0.29,0.33]	chr1	156012	5	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	11	59	2	2.75806	2.9013150000000003	3.04457	1.09203e-4	3.96329e-5	0.00209994	8.539e-4
chr16	53156478	53156575	15665894	0	+	0.360825	(0.36,0.39]	chr16	1245065	4	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.63115	2.9013	3.17145	0.0245975	3.99865e-4	0.114841	0.0054764
chrX	108084493	108084589	19163715	0	-	0.364583	(0.36,0.39]	chrX	1629964	4	UTR3	UTR3:EXON_MRNA	PSMD10	ENSG00000101843.19	ENST00000217958.8	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.63115	2.9013	3.17145	0.0245975	3.99865e-4	0.114841	0.0054764
chr17	48621251	48621348	16578555	0	-	0.463918	(0.455,0.49]	chr17	1361937	2	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	128	2	2.78907	2.901085	3.0131	5.69593e-5	7.73352e-7	0.00126419	3.2172e-5
chr12	25409368	25409430	13258646	0	-	0.435484	(0.42,0.455]	chr12	1039123	2	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	RP11-318G8.1:LMNTD1	ENSG00000241846.1:ENSG00000152936.11	ENST00000480211.1:ENST00000543629.5	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	7	53	2	2.67373	2.9008399999999996	3.12795	5.59707e-4	1.0291e-4	0.00771312	0.00184556
chr11	812836	812876	11758944	0	+	0.425	(0.42,0.455]	chr11	898492	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPLP2	ENSG00000177600.9	ENST00000532004.5:ENST00000321153.9:ENST00000530797.5:ENST00000530398.1:ENST00000526222.5:ENST00000525722.1:ENST00000527517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	54	2	2.22933	2.900795	3.57226	0.0102262	5.15583e-6	0.062872	1.58804e-4
chr5	33460901	33460982	5927447	0	+	0.518519	(0.49,0.53]	chr5	464423	1	CDS	CDS:UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	65	2	2.84846	2.900685	2.95291	0.00119735	3.65573e-5	0.0134293	7.96391e-4
chr1	244708541	244708639	804437	0	+	0.459184	(0.455,0.49]	chr1	80056	29	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.25667	2.90064	3.54461	0.00445666	4.40117e-5	0.0346553	9.24938e-4
chr10	43407767	43407819	11461974	0	-	0.673077	(0.59,1]	chr10	873976	2	UTR5	UTR5:EXON_MRNA:INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	2.18066	2.9005099999999997	3.62036	0.00401624	5.6143e-5	0.0324137	0.00113339
chr5	75361825	75361924	6037185	0	+	0.363636	(0.36,0.39]	chr5	473669	16	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.336	2.9004849999999998	3.46497	0.0154226	0.00105709	0.0834369	0.0123035
chr17	43014896	43014993	16550640	0	-	0.494845	(0.49,0.53]	chr17	1357992	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	67	2	2.3044	2.90019	3.49598	0.00696379	2.05267e-6	0.0474632	7.32173e-5
chr8	37859114	37859213	9794168	0	-	0.383838	(0.36,0.39]	chr8	740400	6	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	2.46777	2.9000899999999996	3.33241	0.00193631	4.3886e-4	0.0192272	0.00591388
chr17	48928383	48928479	16256030	0	+	0.458333	(0.455,0.49]	chr17	1317570	14	UTR3	UTR3:EXON_MRNA	UBE2Z	ENSG00000159202.18	ENST00000360943.10:ENST00000513342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	1.92777	2.90005	3.87233	0.0286531	1.08465e-4	0.128685	0.00193256
chr3	4984555	4984651	3277656	0	+	0.395833	(0.39,0.42]	chr3	288722	10	UTR3	UTR3:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	9	59	2	2.5693	2.899935	3.23057	3.34829e-4	1.34921e-4	0.00509483	0.00230697
chr1	44879817	44879912	972394	0	-	0.536842	(0.53,0.59]	chr1	102665	1	CDS	CDS:EXON_MRNA	EIF2B3	ENSG00000070785.17	ENST00000620860.4:ENST00000360403.7:ENST00000439363.5:ENST00000372183.7	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.77921	2.8998749999999998	3.02054	0.0132865	0.00577011	0.0740932	0.0426551
chr12	31754879	31754960	12815761	0	+	0.555556	(0.53,0.59]	chr12	995152	3	EXON_PSEUDO	EXON_PSEUDO	IFITM3P2	ENSG00000223722.3	ENST00000453713.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	24	2	2.77921	2.8998749999999998	3.02054	0.0132865	0.00577011	0.0740932	0.0426551
chr15	90231431	90231507	15437786	0	-	0.552632	(0.53,0.59]	chr15	1221215	2	CDS	CDS:UTR5:EXON_MRNA	CIB1	ENSG00000185043.12	ENST00000328649.11:ENST00000612800.1:ENST00000650306.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.77921	2.8998749999999998	3.02054	0.0132865	0.00577011	0.0740932	0.0426551
chr22	35419883	35419947	18359591	0	+	0.5625	(0.53,0.59]	chr22	1561053	1	CDS	CDS:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	24	2	2.77921	2.8998749999999998	3.02054	0.0132865	0.00577011	0.0740932	0.0426551
chr1	44762345	44762398	174020	0	+	0.584906	(0.53,0.59]	chr1	22394	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000423289.1:ENST00000472235.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.7898	2.89985	3.0099	0.0128364	0.00600486	0.0719798	0.042887
chr11	64767191	64767275	12419209	0	-	0.535714	(0.53,0.59]	chr11	962893	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5:ENST00000413725.5:ENST00000433274.6:ENST00000486867.1:ENST00000477596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	24	2	2.7898	2.89985	3.0099	0.0128364	0.00600486	0.0719798	0.042887
chr2	20290720	20290790	2541060	0	-	0.571429	(0.53,0.59]	chr2	228554	2	CDS	CDS:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.7898	2.89985	3.0099	0.0128364	0.00600486	0.0719798	0.042887
chr20	17660059	17660146	17916324	0	-	0.54023	(0.53,0.59]	chr20	1516287	2	CDS	CDS:EXON_MRNA:INTRON	RRBP1	ENSG00000125844.16	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000398782.2	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.7898	2.89985	3.0099	0.0128364	0.00600486	0.0719798	0.042887
chr7	103348600	103348685	8441505	0	+	0.588235	(0.53,0.59]	chr7	645072	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	PSMC2:RPS29P16	ENSG00000161057.13:ENSG00000235354.1	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1:ENST00000452798.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	10	98	2	2.69635	2.89979	3.10323	0.00112127	3.15092e-6	0.0128408	1.05314e-4
chr11	57335121	57335180	12394144	0	-	0.661017	(0.59,1]	chr11	958562	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6:ENST00000529002.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	2.17889	2.899625	3.62036	0.025085	5.6143e-5	0.116848	0.00113339
chr10	84144874	84144945	11164543	0	+	0.366197	(0.36,0.39]	chr10	848139	1	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	12	80	2	2.88902	2.89961	2.9102	5.15161e-4	4.90585e-6	0.00719513	1.526e-4
chr11	72016062	72016161	12447171	0	-	0.575758	(0.53,0.59]	chr11	967275	33	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000542977.5:ENST00000537217.5	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.515	2.89961	3.28422	0.0292633	2.10061e-4	0.129773	0.00327655
chr10	102160232	102160287	11226654	0	+	0.418182	(0.39,0.42]	chr10	854859	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	1.65028	2.8995699999999998	4.14886	0.0292034	0.00415881	0.128158	0.0325842
chr5	113019324	113019423	6153952	0	+	0.353535	(0.33,0.36]	chr5	480731	60	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.28792	2.899145	3.51037	0.0239159	5.65559e-5	0.112531	0.00114087
chr11	809966	810055	11758907	0	+	0.707865	(0.59,1]	chr11	898470	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP2	ENSG00000177600.9	ENST00000532004.5:ENST00000321153.9:ENST00000530797.5:ENST00000524867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	235	3620	2	2.43954	2.899105	3.35867	1.11248e-5	7.62681e-9	3.30679e-4	6.15692e-7
chr17	48576920	48577020	16578100	0	-	0.6	(0.59,1]	chr17	1361841	2	CDS	CDS:EXON_MRNA:INTRON	HOXB3:HOXB4	ENSG00000120093.12:ENSG00000182742.6	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000552000.2:ENST00000332503.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	32	2	1.81066	2.899085	3.98751	0.0369806	0.0301044	0.145401	0.129773
chr6	139373406	139373493	7995337	0	-	0.735632	(0.59,1]	chr6	611350	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2:ENST00000618718.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.3821	2.89873	3.41536	0.00554753	0.00164655	0.0417049	0.0163443
chr22	21790891	21790990	18442667	0	-	0.383838	(0.36,0.39]	chr22	1572534	17	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.46465	2.89853	3.33241	0.00193631	0.00159698	0.0192272	0.015942
chr20	4023916	4024004	17659664	0	+	0.522727	(0.49,0.53]	chr20	1493147	1	EXON_PSEUDO	EXON_PSEUDO	FTLP3	ENSG00000226608.3	ENST00000427242.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	36	272	2	2.88728	2.89851	2.90974	9.35052e-7	1.69981e-7	4.17859e-5	8.85125e-6
chr3	14945658	14945757	4050053	0	-	0.363636	(0.36,0.39]	chr3	340108	30	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1	lncRNA	lncRNA	lncRNA	lncRNA	7	46	2	2.80604	2.89845	2.99086	3.25198e-4	2.42014e-4	0.00500369	0.00366309
chr11	88337572	88337672	12533519	0	-	0.68	(0.59,1]	chr11	972584	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000679199.1:ENST00000524463.6:ENST00000679032.1:ENST00000528020.2:ENST00000529974.2:ENST00000533865.6:ENST00000677468.1:ENST00000677877.1:ENST00000393301.5:ENST00000677796.1:ENST00000677976.1:ENST00000677106.1:ENST00000534131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	2.85973	2.898355	2.93698	0.0015925	7.1836e-4	0.0159023	0.00903729
chr17	1679016	1679111	16401595	0	-	0.484211	(0.455,0.49]	chr17	1334953	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	67	2	1.80094	2.898325	3.99571	0.0265942	1.8164e-7	0.120205	9.36885e-6
chr1	10411484	10411552	39823	0	+	0.588235	(0.53,0.59]	chr1	4804	2	CDS	CDS:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000483936.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.27113	2.89804	3.52495	0.0178853	5.15316e-5	0.0918323	0.00105223
chr14	23097906	23097981	14175748	0	+	0.546667	(0.53,0.59]	chr14	1110553	3	CDS	CDS:EXON_MRNA	C14orf119	ENSG00000179933.6	ENST00000319074.6:ENST00000554203.1	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.27113	2.89804	3.52495	0.0178853	5.15316e-5	0.0918323	0.00105223
chr4	109526225	109526312	5039746	0	+	0.413793	(0.39,0.42]	chr4	410007	1	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.13132	2.897995	3.66467	0.02908	3.60066e-4	0.127648	0.00544157
chr1	111184190	111184210	406217	0	+	0.25	[0,0.29]	chr1	39912	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CEPT1	ENSG00000134255.14	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000478042.5:ENST00000615636.4:ENST00000473474.5:ENST00000467362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.8304	2.897865	2.96533	0.0121878	0.0024246	0.0701019	0.0227938
chr11	9288491	9288542	12265190	0	-	0.372549	(0.36,0.39]	chr11	948412	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	46	2	2.11751	2.89721	3.67691	0.00296338	2.38454e-5	0.0253798	6.18922e-4
chr7	55999534	55999626	8290406	0	+	0.358696	(0.33,0.36]	chr7	631447	6	UTR3	UTR3:EXON_MRNA	NIPSNAP2	ENSG00000146729.10	ENST00000446778.5:ENST00000322090.8:ENST00000497279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	45	2	2.88053	2.897185	2.91384	0.0021527	6.44665e-5	0.0208395	0.00126362
chr16	56609262	56609354	15679102	0	+	0.663043	(0.59,1]	chr16	1246421	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MT2A	ENSG00000125148.7	ENST00000245185.6:ENST00000563985.1:ENST00000562017.1:ENST00000561491.1:ENST00000567300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	123	2	2.58269	2.89716	3.21163	0.0067313	1.66906e-5	0.0461258	4.22328e-4
chr6	154832034	154832131	7502030	0	+	0.381443	(0.36,0.39]	chr6	572935	2	CDS	CDS:EXON_MRNA	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.46176	2.8970849999999997	3.33241	0.00365867	0.00193631	0.0299719	0.0192272
chr12	120144638	120144736	13579175	0	-	0.459184	(0.455,0.49]	chr12	1068601	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.66563	2.89703	3.12843	0.0043075	0.00392855	0.0334284	0.0322851
chr1	26781815	26781911	111031	0	+	0.302083	(0.29,0.33]	chr1	13356	12	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.50855	2.8970000000000002	3.28545	0.0023535	4.11768e-5	0.0222204	8.82748e-4
chr12	124787405	124787457	13600242	0	-	0.557692	(0.53,0.59]	chr12	1071687	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	58	2	2.79311	2.896985	3.00086	6.84253e-4	2.19267e-4	0.00836671	0.00365543
chr21	33524864	33524932	18220547	0	-	0.485294	(0.455,0.49]	chr21	1546378	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	71	2	2.60512	2.89682	3.18852	1.06212e-4	7.41674e-5	0.00189999	0.00156055
chr18	9955786	9955885	16756148	0	+	0.40404	(0.39,0.42]	chr18	1381801	17	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.59744	2.89666	3.19588	0.00572981	0.00321212	0.0417368	0.0280721
chr3	143037256	143037335	3793429	0	+	0.417722	(0.39,0.42]	chr3	323932	2	CDS	CDS:UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000488497.7:ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000480029.5:ENST00000467348.1:ENST00000461844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.59744	2.89666	3.19588	0.00572981	0.00321212	0.0417368	0.0280721
chr6	10755194	10755247	7048708	0	+	0.396226	(0.39,0.42]	chr6	539793	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000475942.5:ENST00000461342.5:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5:ENST00000478732.1:ENST00000486421.1:ENST00000467229.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.59744	2.89666	3.19588	0.00572981	0.00321212	0.0417368	0.0280721
chr6	27807525	27807625	7649602	0	-	0.66	(0.59,1]	chr6	582800	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC13	ENSG00000185130.5	ENST00000377401.3	protein_coding	protein_coding	protein_coding	protein_coding	6	98	2	2.73861	2.896505	3.0544	0.00125376	2.52807e-4	0.0138274	0.00381058
chr19	17862093	17862158	17255702	0	+	0.6	(0.59,1]	chr19	1424754	1	CDS	CDS:EXON_MRNA	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000602216.1:ENST00000597648.5:ENST00000599870.1:ENST00000600238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	301	2	2.69933	2.896485	3.09364	3.41002e-5	6.93139e-6	8.33444e-4	2.04398e-4
chr11	6483401	6483500	11781844	0	+	0.383838	(0.36,0.39]	chr11	901762	13	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2010I16.2:TIMM10B	ENSG00000283977.1:ENSG00000132286.12	ENST00000639224.1:ENST00000640959.1:ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	40	2	2.32793	2.8964499999999997	3.46497	0.00105709	9.81387e-4	0.0123035	0.0109726
chr8	85328463	85328559	9920300	0	-	0.302083	(0.29,0.33]	chr8	749254	10	UTR3	UTR3:EXON_MRNA	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5:ENST00000522389.5:ENST00000521679.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.24226	2.896375	3.55049	0.0306054	6.15323e-4	0.130226	0.00765848
chr8	123076316	123076414	9587442	0	+	0.306122	(0.29,0.33]	chr8	727025	9	INTRON	INTRON	TBC1D31	ENSG00000156787.17	ENST00000520368.5:ENST00000519418.5:ENST00000287380.6:ENST00000522420.5:ENST00000327098.9:ENST00000518099.5:ENST00000521676.5:ENST00000524307.5:ENST00000522276.1:ENST00000518684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.24226	2.896375	3.55049	0.0306054	6.15323e-4	0.130226	0.00765848
chr10	87051072	87051169	11604804	0	-	0.257732	[0,0.29]	chr10	883719	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000683647.1:ENST00000683813.1:ENST00000474574.2:ENST00000684032.1:ENST00000684338.1:ENST00000487058.2:ENST00000684201.1:ENST00000684690.1:ENST00000682507.1:ENST00000683649.1:ENST00000683783.1:ENST00000681988.1:ENST00000684665.1:ENST00000684434.1:ENST00000682622.1:ENST00000684546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	2.80134	2.89624	2.99114	0.0049344	2.71917e-4	0.0379087	0.00404713
chr6	137206135	137206221	7988140	0	-	0.430233	(0.42,0.455]	chr6	610819	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IFNGR1	ENSG00000027697.15	ENST00000367739.9:ENST00000645045.1:ENST00000643119.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000458076.5:ENST00000414770.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.7523	2.896165	3.04003	0.0153283	7.68268e-4	0.0828908	0.00916171
chr12	29391657	29391756	12810664	0	+	0.282828	[0,0.29]	chr12	994754	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	OVCH1-AS1	ENSG00000257599.3	ENST00000641955.1:ENST00000551108.1:ENST00000550906.2	lncRNA	lncRNA	lncRNA	lncRNA	4	22	2	2.67953	2.89605	3.11257	0.0046416	0.00120521	0.0354333	0.0134827
chr7	130165194	130165291	9063132	0	-	0.329897	(0.29,0.33]	chr7	692134	6	UTR3	UTR3:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.17855	2.89589	3.61323	0.0183673	3.91773e-6	0.0928041	1.26663e-4
chr14	102002878	102002965	14495353	0	+	0.482759	(0.455,0.49]	chr14	1133053	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.30139	2.89586	3.49033	0.0530131	7.92678e-4	0.195536	0.00933379
chr3	177032970	177033053	4593568	0	-	0.457831	(0.455,0.49]	chr3	379647	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000626758.1:ENST00000635757.1:ENST00000637681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	22	2	2.30139	2.89586	3.49033	0.0530131	7.92678e-4	0.195536	0.00933379
chr12	47781565	47781664	12860221	0	+	0.494949	(0.49,0.53]	chr12	998325	14	UTR3	UTR3:EXON_MRNA:INTRON	SLC48A1	ENSG00000211584.14	ENST00000442892.2:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.03065	2.89582	3.76099	0.0189484	2.00194e-4	0.0958835	0.0034021
chr22	32498729	32498829	18354459	0	+	0.38	(0.36,0.39]	chr22	1560441	3	UTR3	UTR3:EXON_MRNA	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000397426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.76749	2.89573	3.02397	0.00674398	0.00287858	0.0461258	0.0247002
chr4	80054271	80054352	5485008	0	-	0.37037	(0.36,0.39]	chr4	439608	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7:ENST00000514959.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.76749	2.89573	3.02397	0.00674398	0.00287858	0.0461258	0.0247002
chr22	26541066	26541159	18453673	0	-	0.623656	(0.59,1]	chr22	1574351	4	CDS	CDS:EXON_MRNA	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000398110.6	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.32455	2.895575	3.4666	0.0520547	0.00133574	0.193787	0.0139317
chr12	123295707	123295807	13595075	0	-	0.39	(0.36,0.39]	chr12	1070977	67	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.76778	2.8954649999999997	3.02315	0.00365703	8.65481e-4	0.0307238	0.0100741
chr2	26289953	26290038	1686426	0	+	0.388235	(0.36,0.39]	chr2	164885	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.76778	2.8954649999999997	3.02315	0.00365703	8.65481e-4	0.0307238	0.0100741
chr12	54240556	54240656	13342932	0	-	0.41	(0.39,0.42]	chr12	1049602	92	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	1.961	2.895365	3.82973	0.00719538	1.3728e-4	0.0486209	0.00232973
chr11	118473161	118473257	12158620	0	+	0.510417	(0.49,0.53]	chr11	936998	8	CDS	CDS:EXON_MRNA:INTRON	RP11-770J1.8:KMT2A	ENSG00000285827.1:ENSG00000118058.23	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000531904.6:ENST00000649699.1:ENST00000533790.2:ENST00000527869.6:ENST00000649690.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.66773	2.89518	4.12263	0.0381288	0.00591451	0.149227	0.0427941
chr21	18857977	18858076	18064950	0	+	0.464646	(0.455,0.49]	chr21	1532462	3	EXON_PSEUDO	EXON_PSEUDO	PPIAP22	ENSG00000198618.5	ENST00000358455.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	45	2	2.72051	2.894825	3.06914	6.6649e-4	4.13074e-4	0.00820018	0.00605644
chr11	65444058	65444157	11984784	0	+	0.555556	(0.53,0.59]	chr11	920390	201	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	NEAT1:MIR612	ENSG00000245532.9:ENSG00000283791.1	ENST00000501122.2:ENST00000384994.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	15	136	2	2.5426	2.89482	3.24704	1.04763e-4	9.96984e-7	0.00187484	4.42534e-5
chr4	173321814	173321912	5233741	0	+	0.357143	(0.33,0.36]	chr4	421244	2	UTR3	UTR3:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000515862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.7655	2.89472	3.02394	0.0175892	8.89743e-4	0.0918323	0.0102057
chr9	77384484	77384584	10319188	0	+	0.34	(0.33,0.36]	chr9	777082	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.7655	2.89472	3.02394	0.0175892	8.89743e-4	0.0918323	0.0102057
chr22	40825487	40825583	18517878	0	-	0.3125	(0.29,0.33]	chr22	1580937	11	UTR3	UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.45373	2.894585	3.33544	0.0156405	0.0016889	0.084273700000000007	0.0165476
chr3	196051547	196051645	4663156	0	-	0.44898	(0.42,0.455]	chr3	385550	24	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	2.61455	2.894565	3.17458	3.62473e-4	2.16935e-5	0.00545349	5.17607e-4
chr2	74461853	74461949	2742886	0	-	0.645833	(0.59,1]	chr2	244411	6	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	52	2	2.17889	2.8945600000000002	3.61023	0.025085	7.25496e-4	0.116848	0.00869086
chr6	32171396	32171496	7664681	0	-	0.61	(0.59,1]	chr6	586118	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000476663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	52	2	2.17889	2.8945600000000002	3.61023	0.025085	7.25496e-4	0.116848	0.00869086
chr11	47191451	47191542	12385595	0	-	0.472527	(0.455,0.49]	chr11	956560	4	EXON_PSEUDO	EXON_PSEUDO	RP11-390K5.1	ENSG00000243802.2	ENST00000473109.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	42	2	1.96875	2.894525	3.8203	0.0480352	6.9787e-6	0.180552	2.0562e-4
chr15	72583782	72583880	15018736	0	+	0.346939	(0.33,0.36]	chr15	1180122	6	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	23	2	1.66025	2.8943250000000003	4.1284	0.0220685	0.00407303	0.104519	0.0324137
chr10	70152475	70152575	11560405	0	-	0.55	(0.53,0.59]	chr10	879566	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000452767.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.35511	2.894265	3.43342	0.0445399	8.93729e-5	0.172163	0.00165837
chr20	62387510	62387610	17861412	0	+	0.54	(0.53,0.59]	chr20	1510051	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6:ENST00000370592.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	47	2	1.90942	2.8941299999999996	3.87884	0.0105233	1.11478e-4	0.0644466	0.00213212
chr15	22866301	22866390	14810909	0	+	0.505618	(0.49,0.53]	chr15	1162139	2	CDS	CDS:EXON_MRNA	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.78962	2.894055	2.99849	0.0129044	0.00630123	0.0725185	0.0445415
chr4	75648689	75648741	5472907	0	-	0.519231	(0.49,0.53]	chr4	438382	2	CDS	CDS:UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000677520.1:ENST00000507133.2:ENST00000677426.1:ENST00000678642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.78962	2.894055	2.99849	0.0129044	0.00630123	0.0725185	0.0445415
chr5	172768951	172769041	6984126	0	-	0.522222	(0.49,0.53]	chr5	533737	2	CDS	CDS:EXON_MRNA	DUSP1	ENSG00000120129.6	ENST00000239223.4	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.78962	2.894055	2.99849	0.0129044	0.00630123	0.0725185	0.0445415
chr15	22866479	22866568	14810911	0	+	0.303371	(0.29,0.33]	chr15	1162139	4	CDS	CDS:EXON_MRNA	NIPA2	ENSG00000140157.16	ENST00000398014.7:ENST00000359727.8:ENST00000674173.1:ENST00000337451.8:ENST00000674289.1:ENST00000674477.1:ENST00000398013.7:ENST00000674330.1:ENST00000539711.2:ENST00000674215.1:ENST00000674227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	25	2	2.14085	2.89397	3.64709	0.0117968	3.76873e-4	0.0686664	0.00523508
chr1	150647224	150647324	1289293	0	-	0.53	(0.49,0.53]	chr1	128300	11	UTR3	UTR3:EXON_MRNA	GOLPH3L	ENSG00000143457.11	ENST00000271732.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.8671	2.89396	2.92082	0.0100489	0.00827037	0.0623334	0.0534766
chr1	154977986	154978031	482008	0	+	0.511111	(0.49,0.53]	chr1	50162	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000368436.1:ENST00000477676.6:ENST00000474215.5:ENST00000473344.1:ENST00000471245.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.8671	2.89396	2.92082	0.0100489	0.00827037	0.0623334	0.0534766
chr9	131498330	131498428	10498819	0	+	0.510204	(0.49,0.53]	chr9	793636	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.8671	2.89396	2.92082	0.0100489	0.00827037	0.0623334	0.0534766
chr19	18173841	18173941	17257671	0	+	0.66	(0.59,1]	chr19	1425230	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000597802.2:ENST00000407280.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.44587	2.89379	3.34171	0.0105307	0.00234977	0.0644466	0.0222173
chrX	135032998	135033089	18865055	0	+	0.67033	(0.59,1]	chrX	1607588	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	2.41177	2.893615	3.37546	0.00235332	2.25785e-4	0.0215127	0.00375451
chr2	47162518	47162588	2631469	0	-	0.428571	(0.42,0.455]	chr2	236932	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	64	2	2.47621	2.8933400000000002	3.31047	0.00161397	8.24127e-6	0.0169243	2.34981e-4
chr3	14945261	14945360	4050049	0	-	0.464646	(0.455,0.49]	chr3	340108	26	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1	lncRNA	lncRNA	lncRNA	lncRNA	7	50	2	2.40916	2.8932849999999997	3.37741	0.00105201	1.27402e-4	0.0116806	0.00241206
chr12	6516926	6517025	12713394	0	+	0.50505	(0.49,0.53]	chr12	986542	2	CDS	CDS:UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.78794	2.8932149999999996	2.99849	0.00630123	0.00251838	0.0445415	0.0226599
chr3	49099509	49099578	4172447	0	-	0.521739	(0.49,0.53]	chr3	350352	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	QARS1:MIR6890	ENSG00000172053.18:ENSG00000284488.1	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000637543.1:ENST00000634432.1:ENST00000620931.1:ENST00000482468.6	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	3	28	2	2.78794	2.8932149999999996	2.99849	0.00630123	0.00251838	0.0445415	0.0226599
chr11	34960419	34960518	11907291	0	+	0.525253	(0.49,0.53]	chr11	909956	1	CDS	CDS:EXON_MRNA:INTRON	PDHX	ENSG00000110435.13	ENST00000533550.5:ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000533262.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.05119	2.893065	3.73494	0.0360743	0.0189345	0.145024	0.0934721
chr12	124013991	124014088	13130941	0	+	0.515464	(0.49,0.53]	chr12	1026671	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	16	2	2.05119	2.893065	3.73494	0.0360743	0.0189345	0.145024	0.0934721
chr19	16125469	16125547	17247510	0	+	0.512821	(0.49,0.53]	chr19	1423006	1	CDS	CDS:EXON_MRNA	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000587156.5:ENST00000589697.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.05119	2.893065	3.73494	0.0360743	0.0189345	0.145024	0.0934721
chr3	12584330	12584421	4040908	0	-	0.494505	(0.49,0.53]	chr3	339179	9	UTR3	UTR3:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7:ENST00000432427.2:ENST00000423275.5:ENST00000471449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.05119	2.893065	3.73494	0.0360743	0.0189345	0.145024	0.0934721
chr5	61390759	61390852	6610746	0	-	0.516129	(0.49,0.53]	chr5	510945	2	EXON_PSEUDO	EXON_PSEUDO	RPL3P6	ENSG00000213891.3	ENST00000474162.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	16	2	2.05119	2.893065	3.73494	0.0360743	0.0189345	0.145024	0.0934721
chr6	28153629	28153725	7105787	0	+	0.5	(0.49,0.53]	chr6	543599	7	CDS	CDS:UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7:ENST00000606198.5:ENST00000457389.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.05119	2.893065	3.73494	0.0360743	0.0189345	0.145024	0.0934721
chr22	23766006	23766026	18448266	0	-	0.65	(0.59,1]	chr22	1573337	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CHCHD10	ENSG00000250479.9	ENST00000484558.3:ENST00000401675.7:ENST00000520222.1:ENST00000523865.1:ENST00000517886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.11894	2.89299	3.66704	0.0293157	6.16458e-4	0.128478	0.00822794
chr13	25096397	25096497	13647287	0	+	0.46	(0.455,0.49]	chr13	1075795	2	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	2.33911	2.8929549999999997	3.4468	5.94441e-4	9.07948e-7	0.00804997	3.68762e-5
chr3	184323779	184323878	3949228	0	+	0.565657	(0.53,0.59]	chr3	332436	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.0404	2.89291	3.74542	0.0362529	2.30148e-4	0.148525	0.00352524
chrX	85089557	85089656	18751848	0	+	0.333333	(0.33,0.36]	chrX	1600208	20	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.62574	2.89275	3.15976	0.00437542	0.00176861	0.0340502	0.0172426
chr16	88732606	88732669	16074604	0	-	0.634921	(0.59,1]	chr16	1291710	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000490756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	51	2	2.47837	2.892725	3.30708	0.00970721	0.00252451	0.0608296	0.0226777
chr16	76235528	76235623	16040408	0	-	0.557895	(0.53,0.59]	chr16	1288489	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-150D5.2:RPL18P13	ENSG00000260983.2:ENSG00000244485.1	ENST00000568714.2:ENST00000478088.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	54	2	2.47	2.8924950000000003	3.31499	0.0089333	3.217e-5	0.0567495	7.12922e-4
chrX	136880680	136880764	19250798	0	-	0.583333	(0.53,0.59]	chrX	1635490	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1:ENST00000565907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	68	2	2.3186	2.89236	3.46612	0.00299541	1.16467e-5	0.0256157	3.43116e-4
chr10	75230897	75230989	11126612	0	+	0.532609	(0.53,0.59]	chr10	846676	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000332211.10:ENST00000313132.8:ENST00000460044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	68	2	2.69635	2.892335	3.08832	0.00112127	4.03289e-5	0.0128408	8.67021e-4
chr14	104836756	104836852	14799103	0	-	0.770833	(0.59,1]	chr14	1159997	9	EXON_PSEUDO	EXON_PSEUDO	RPS2P4	ENSG00000196183.5	ENST00000476944.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	62	2	1.96265	2.892215	3.82178	0.0238491	2.76767e-4	0.112466	0.00409634
chr3	13358221	13358308	4046635	0	-	0.655172	(0.59,1]	chr3	339642	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	62	2	1.96265	2.892215	3.82178	0.0238491	2.76767e-4	0.112466	0.00409634
chr15	40036988	40037018	15230355	0	-	0.433333	(0.42,0.455]	chr15	1198276	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SRP14	ENSG00000140319.11	ENST00000267884.11:ENST00000558527.5:ENST00000558720.5:ENST00000560773.5:ENST00000559439.5:ENST00000559475.5:ENST00000559081.1:ENST00000558243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	40	2	2.42938	2.892145	3.35491	0.0045028	1.39104e-4	0.0349711	0.00235518
chr1	43978199	43978295	169393	0	+	0.520833	(0.49,0.53]	chr1	21858	3	UTR3	UTR3:EXON_MRNA	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	2.54558	2.892065	3.23855	0.0024326	5.12488e-5	0.0228485	0.00104999
chr6	73593877	73593977	7796158	0	-	0.37	(0.36,0.39]	chr6	597159	6	UTR3	UTR3:EXON_MRNA	SLC17A5	ENSG00000119899.13	ENST00000355773.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.84089	2.8918749999999998	2.94286	0.0128123	0.00128446	0.0719798	0.0136229
chr7	6462273	6462372	8664672	0	-	0.383838	(0.36,0.39]	chr7	662823	13	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	2.84089	2.8918749999999998	2.94286	0.0128123	0.00128446	0.0719798	0.0136229
chr10	28566223	28566323	10990079	0	+	0.37	(0.36,0.39]	chr10	835854	278	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.38564	2.891835	3.39803	0.0476159	0.00122711	0.17993	0.0130695
chr7	34969432	34969532	8766917	0	-	0.39	(0.36,0.39]	chr7	668557	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DPY19L1	ENSG00000173852.15	ENST00000310974.8:ENST00000638088.2:ENST00000446375.1:ENST00000462134.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.38564	2.891835	3.39803	0.0476159	0.00122711	0.17993	0.0130695
chr10	70427323	70427423	11100504	0	+	0.41	(0.39,0.42]	chr10	844350	57	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.18155	2.8914299999999997	3.60131	0.0283931	4.60576e-4	0.127654	0.00611208
chr22	32478980	32479056	18354249	0	+	0.394737	(0.39,0.42]	chr22	1560401	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FBXO7	ENSG00000100225.18	ENST00000420700.5:ENST00000425028.5:ENST00000266087.12:ENST00000492535.1:ENST00000452138.3:ENST00000397426.5:ENST00000444207.1:ENST00000465418.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.18155	2.8914299999999997	3.60131	0.0283931	4.60576e-4	0.127654	0.00611208
chrX	112661712	112661768	18826861	0	+	0.410714	(0.39,0.42]	chrX	1604366	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200436.1	ENST00000363566.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	3	25	2	2.18155	2.8914299999999997	3.60131	0.0283931	4.60576e-4	0.127654	0.00611208
chr1	70232293	70232377	280703	0	+	0.559524	(0.53,0.59]	chr1	30170	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SRSF11	ENSG00000116754.13	ENST00000370951.5:ENST00000370950.7:ENST00000475204.5:ENST00000395136.6:ENST00000473950.5:ENST00000486667.5:ENST00000481648.5:ENST00000484162.5:ENST00000370949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	41	2	2.72478	2.8912649999999998	3.05775	0.00324675	6.94592e-4	0.0282494	0.00846751
chr1	227767630	227767718	742795	0	+	0.454545	(0.42,0.455]	chr1	74973	2	UTR3	UTR3:EXON_MRNA:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	1.93033	2.890915	3.8515	0.0505055	0.0119089	0.181202	0.0686664
chr16	88894382	88894482	16075904	0	-	0.43	(0.42,0.455]	chr16	1291988	15	INTRON	INTRON	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000569464.5:ENST00000569443.5:ENST00000562719.5:ENST00000563640.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.93033	2.890915	3.8515	0.0505055	0.0119089	0.181202	0.0686664
chr17	40411353	40411404	16538997	0	-	0.431373	(0.42,0.455]	chr17	1354671	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.93033	2.890915	3.8515	0.0505055	0.0119089	0.181202	0.0686664
chr2	62223015	62223115	1845103	0	+	0.45	(0.42,0.455]	chr2	175154	8	CDS	CDS:EXON_MRNA	B3GNT2	ENSG00000170340.11	ENST00000301998.5:ENST00000405767.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.93033	2.890915	3.8515	0.0505055	0.0119089	0.181202	0.0686664
chr3	36827594	36827691	4116834	0	-	0.43299	(0.42,0.455]	chr3	344124	9	UTR3	UTR3:EXON_MRNA	TRANK1	ENSG00000168016.15	ENST00000645898.2:ENST00000429976.5:ENST00000646897.1:ENST00000643881.1:ENST00000646436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	1.93033	2.890915	3.8515	0.0505055	0.0119089	0.181202	0.0686664
chr20	35704382	35704480	17955510	0	-	0.27551	[0,0.29]	chr20	1521211	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000461283.5:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000665058.1:ENST00000476806.5:ENST00000495293.5:ENST00000492779.5:ENST00000482563.1:ENST00000496183.5:ENST00000490354.5:ENST00000465158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	38	2	2.79062	2.890795	2.99097	0.00169679	8.53736e-5	0.01759	0.001603
chr5	80650476	80650574	6667600	0	-	0.377551	(0.36,0.39]	chr5	514741	5	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	127	835	2	1.99249	2.89056	3.78863	3.44886e-5	1e-12	8.41362e-4	2.25522e-10
chr1	150556938	150556994	468484	0	+	0.410714	(0.39,0.42]	chr1	47474	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	10	102	2	1.91489	2.89048	3.86607	0.0197788	7.25165e-9	0.0960939	5.88776e-7
chr1	207793518	207793595	690214	0	+	0.480519	(0.455,0.49]	chr1	70118	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000636114.1:ENST00000488596.5:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	64	2	2.0456	2.89044	3.73528	0.00663817	1.49591e-6	0.0456262	5.62205e-5
chr1	109402012	109402090	1220371	0	-	0.435897	(0.42,0.455]	chr1	119067	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5:ENST00000538610.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	73	2	1.68865	2.89035	4.09205	0.0276098	8.17459e-8	0.124664	4.70699e-6
chr15	48341514	48341585	14921573	0	+	0.352113	(0.33,0.36]	chr15	1173087	1	CDS	CDS:UTR3:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000559852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	58	2	2.49264	2.8903350000000003	3.28803	5.92122e-4	9.889e-6	0.0080222	2.73882e-4
chr1	10376684	10376781	39610	0	+	0.463918	(0.455,0.49]	chr1	4753	2	UTR3	UTR3:EXON_MRNA:INTRON	KIF1B	ENSG00000054523.19	ENST00000676179.1:ENST00000263934.10:ENST00000377086.5:ENST00000377081.5:ENST00000620295.2:ENST00000622724.3:ENST00000635499.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.69053	2.8900699999999997	3.08961	0.0182983	0.00445157	0.0925808	0.0340751
chr1	248849025	248849124	818930	0	+	0.474747	(0.455,0.49]	chr1	81051	5	UTR3	UTR3:EXON_MRNA	ZNF672	ENSG00000171161.13	ENST00000306562.8	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.69053	2.8900699999999997	3.08961	0.0182983	0.00445157	0.0925808	0.0340751
chr11	35809265	35809365	11910489	0	+	0.46	(0.455,0.49]	chr11	910190	30	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.69053	2.8900699999999997	3.08961	0.0182983	0.00445157	0.0925808	0.0340751
chr20	38011514	38011609	17962663	0	-	0.484211	(0.455,0.49]	chr20	1522288	1	CDS	CDS:EXON_MRNA	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8:ENST00000449821.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.69053	2.8900699999999997	3.08961	0.0182983	0.00445157	0.0925808	0.0340751
chr2	74461949	74462045	2742887	0	-	0.65625	(0.59,1]	chr2	244411	7	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	53	2	2.03921	2.890025	3.74084	0.0371471	4.03818e-4	0.151849	0.00550292
chr9	131198815	131198915	10496375	0	+	0.55	(0.53,0.59]	chr9	793351	17	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	125	2	2.8618	2.889995	2.91819	2.34782e-5	1.12575e-5	6.12612e-4	3.04525e-4
chr17	1662070	1662153	16401400	0	-	0.457831	(0.455,0.49]	chr17	1334892	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.04847	2.889945	3.73142	0.0192065	2.35261e-4	0.0943643	0.00356397
chr2	171517269	171517358	3014281	0	-	0.629214	(0.59,1]	chr2	267007	1	EXON_PSEUDO	EXON_PSEUDO	RPS15P4	ENSG00000233762.3	ENST00000433675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	107	2	2.21052	2.889775	3.56903	0.010462	1.41433e-5	0.063428	3.65833e-4
chr12	95858927	95859000	13026640	0	+	0.575342	(0.53,0.59]	chr12	1014068	1	UTR5	UTR5:EXON_MRNA	SNRPF	ENSG00000139343.10	ENST00000266735.9:ENST00000551316.1:ENST00000553192.5:ENST00000552085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	114	2	2.60541	2.8895999999999997	3.17379	6.86129e-5	8.38179e-6	0.00145689	2.38248e-4
chr22	21762246	21762346	18442373	0	-	0.55	(0.53,0.59]	chr22	1572508	27	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	22	195	2	2.681	2.889575	3.09815	1.33493e-5	4.77607e-7	3.82694e-4	2.1232e-5
chr12	112013465	112013565	13094160	0	+	0.71	(0.59,1]	chr12	1021449	1	CDS_START	CDS_START:CDS:EXON_MRNA	ERP29	ENSG00000089248.7	ENST00000455836.1:ENST00000261735.4:ENST00000553161.1:ENST00000552052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	203	2	1.8165	2.88945	3.9624	0.00302247	1.46712e-6	0.0257942	6.07056e-5
chr1	225920554	225920620	1531286	0	-	0.515152	(0.49,0.53]	chr1	153171	1	CDS	CDS:EXON_MRNA:INTRON	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	68	2	2.03636	2.88931	3.74226	0.00653228	1.44724e-6	0.0454205	5.46137e-5
chr1	67409308	67409408	1079099	0	-	0.38	(0.36,0.39]	chr1	110137	16	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.10159	2.8892499999999997	3.67691	0.00841765	2.38454e-5	0.0543584	6.18922e-4
chr16	28831016	28831072	15620329	0	+	0.535714	(0.53,0.59]	chr16	1238436	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000570284.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	9	84	2	2.76647	2.8891999999999998	3.01193	2.92577e-4	2.62179e-5	0.00464297	6.06365e-4
chr7	106099219	106099282	8977702	0	-	0.412698	(0.39,0.42]	chr7	687046	2	CDS	CDS:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000470347.1:ENST00000634737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.72802	2.88916	3.0503	0.00570576	3.73817e-4	0.0424438	0.00520009
chr7	100802862	100802962	8952753	0	-	0.35	(0.33,0.36]	chr7	684381	4	UTR3	UTR3:EXON_MRNA	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	57	2	2.17012	2.88915	3.60818	0.00108046	6.01069e-6	0.0118355	1.97805e-4
chr1	42951816	42951916	967241	0	-	0.49	(0.455,0.49]	chr1	101901	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6:ENST00000630821.1:ENST00000460369.3:ENST00000629908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr1	154585752	154585808	1303578	0	-	0.482143	(0.455,0.49]	chr1	131369	1	CDS	CDS:UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr1	186398312	186398376	612122	0	+	0.46875	(0.455,0.49]	chr1	63397	1	CDS	CDS:EXON_MRNA	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr1	241879144	241879243	796588	0	+	0.484848	(0.455,0.49]	chr1	79464	5	CDS	CDS:EXON_MRNA	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5:ENST00000521202.2	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr11	18614562	18614658	12303817	0	-	0.479167	(0.455,0.49]	chr11	951678	1	CDS	CDS:EXON_MRNA	SPTY2D1	ENSG00000179119.15	ENST00000336349.6:ENST00000536336.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr11	64231870	64231964	11979605	0	+	0.489362	(0.455,0.49]	chr11	918855	1	CDS	CDS:UTR3:EXON_MRNA	DNAJC4	ENSG00000110011.13	ENST00000321685.7:ENST00000628077.2:ENST00000355040.8:ENST00000536006.5:ENST00000321460.5:ENST00000537109.1:ENST00000543685.1:ENST00000542376.5:ENST00000543791.5:ENST00000535246.1:ENST00000538961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr12	68752110	68752190	12940412	0	+	0.4875	(0.455,0.49]	chr12	1008540	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC35E3	ENSG00000175782.11	ENST00000673712.1:ENST00000674096.1:ENST00000319429.7:ENST00000398004.4:ENST00000431174.2:ENST00000538043.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr13	49722039	49722124	14020321	0	-	0.458824	(0.455,0.49]	chr13	1099678	2	CDS	CDS:EXON_MRNA	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr14	69561018	69561108	14687734	0	-	0.466667	(0.455,0.49]	chr14	1150287	1	EXON_PSEUDO	EXON_PSEUDO	RP11-1046B16.1	ENSG00000244237.1	ENST00000467051.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr15	89201562	89201661	15093504	0	+	0.474747	(0.455,0.49]	chr15	1187100	63	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr17	76390743	76390842	16689765	0	-	0.484848	(0.455,0.49]	chr17	1374635	14	UTR3	UTR3:EXON_MRNA	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000587127.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr22	42213805	42213905	18521703	0	-	0.47	(0.455,0.49]	chr22	1581714	37	CDS	CDS:EXON_MRNA	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000335626.8:ENST00000675876.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr3	158814015	158814067	3842873	0	+	0.480769	(0.455,0.49]	chr3	327139	2	CDS	CDS:UTR3:EXON_MRNA	MFSD1	ENSG00000118855.21	ENST00000622669.4:ENST00000392813.8:ENST00000484166.5:ENST00000651862.1:ENST00000415822.8:ENST00000480292.5:ENST00000264266.12:ENST00000471500.5:ENST00000489639.1:ENST00000477743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr6	42934474	42934536	7154044	0	+	0.483871	(0.455,0.49]	chr6	552249	1	CDS	CDS:EXON_MRNA	CNPY3	ENSG00000137161.17	ENST00000394142.7:ENST00000372836.5	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr6	89758815	89758887	7839130	0	-	0.486111	(0.455,0.49]	chr6	600826	1	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2:ENST00000439638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr7	140358709	140358785	9107503	0	-	0.486842	(0.455,0.49]	chr7	695000	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC37A3	ENSG00000157800.18	ENST00000477571.5:ENST00000326232.14:ENST00000447932.6:ENST00000340308.7:ENST00000460560.5:ENST00000485861.5:ENST00000484416.5:ENST00000490760.5:ENST00000464865.5:ENST00000473707.5:ENST00000464834.5:ENST00000469193.5:ENST00000461089.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	11	2	2.30139	2.88905	3.47671	0.0530131	0.0368644	0.195536	0.145024
chr1	17408021	17408118	874010	0	-	0.536082	(0.53,0.59]	chr1	89600	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	1.4703	2.88903	4.30776	0.0386603	0.00407289	0.149227	0.0324137
chr19	41869080	41869180	17336879	0	+	0.63	(0.59,1]	chr19	1437281	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:PRIMIRNA	RPS19:MIR6797	ENSG00000105372.8:ENSG00000276926.1	ENST00000598742.6:ENST00000600467.6:ENST00000601492.5:ENST00000221975.6:ENST00000598261.2:ENST00000593863.5:ENST00000598399.1:ENST00000621706.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	15	231	2	2.59771	2.889025	3.18034	1.68662e-4	6.12983e-6	0.00297945	1.8368e-4
chr3	196073929	196074020	4663406	0	-	0.505495	(0.49,0.53]	chr3	385636	1	CDS	CDS:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	44	319	2	2.61058	2.888925	3.16727	1.33729e-6	2.94041e-8	5.1236e-5	2.1467e-6
chr17	68043275	68043363	16333813	0	+	0.454545	(0.42,0.455]	chr17	1325127	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	65	2	2.40387	2.88888	3.37389	0.00231472	5.15897e-6	0.0219615	1.58845e-4
chr6	31816623	31816719	7116669	0	+	0.625	(0.59,1]	chr6	546204	9	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	14	216	2	2.87534	2.88887	2.9024	5.79821e-5	3.34259e-5	0.00116707	8.18495e-4
chr17	68043915	68043993	16333820	0	+	0.5	(0.49,0.53]	chr17	1325129	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	76	2	2.57142	2.888835	3.20625	8.92776e-4	6.12284e-6	0.0108581	1.83486e-4
chr10	73043886	73043957	11568603	0	-	0.478873	(0.455,0.49]	chr10	880469	1	CDS	CDS:EXON_MRNA:INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	15	143	2	2.07591	2.88877	3.70163	0.00374552	3.37566e-9	0.0313437	3.0369e-7
chr1	52160345	52160430	1018416	0	-	0.352941	(0.33,0.36]	chr1	105446	2	EXON_PSEUDO	EXON_PSEUDO	RP4-800M22.1	ENSG00000228407.2	ENST00000414059.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	2.51887	2.888535	3.2582	0.0358636	0.00230915	0.147298	0.0211205
chr12	24815013	24815112	13255706	0	-	0.333333	(0.33,0.36]	chr12	1038842	51	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.51887	2.888535	3.2582	0.0358636	0.00230915	0.147298	0.0211205
chr15	85062196	85062296	15075495	0	+	0.36	(0.33,0.36]	chr15	1186020	795	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.51887	2.888535	3.2582	0.0358636	0.00230915	0.147298	0.0211205
chr16	56362713	56362810	15958990	0	-	0.350515	(0.33,0.36]	chr16	1279877	14	UTR3	UTR3:EXON_MRNA	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000566757.1:ENST00000568325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.51887	2.888535	3.2582	0.0358636	0.00230915	0.147298	0.0211205
chr4	108034538	108034629	5037342	0	+	0.340659	(0.33,0.36]	chr4	409778	3	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HADH	ENSG00000138796.18	ENST00000603302.5:ENST00000505878.4:ENST00000639335.1:ENST00000639146.1:ENST00000640752.2:ENST00000507260.3:ENST00000640201.2:ENST00000684696.1:ENST00000309522.8:ENST00000403312.6:ENST00000640060.1:ENST00000638559.1:ENST00000682373.1:ENST00000639698.1:ENST00000638648.2:ENST00000626637.2:ENST00000682067.1:ENST00000639784.1:ENST00000640048.1:ENST00000515462.7:ENST00000510728.6:ENST00000682086.1:ENST00000514776.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.51887	2.888535	3.2582	0.0358636	0.00230915	0.147298	0.0211205
chr18	8917664	8917761	16750735	0	+	0.494845	(0.49,0.53]	chr18	1381318	10	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	9	69	2	2.30059	2.8884	3.47621	0.001114	1.03289e-5	0.0127792	2.84417e-4
chr11	125583520	125583561	12194207	0	+	0.487805	(0.455,0.49]	chr11	940678	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000618552.4:ENST00000534546.5:ENST00000615917.4:ENST00000278903.11:ENST00000531636.5:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	2.63872	2.8882950000000003	3.13787	0.00510378	4.66183e-4	0.0390492	0.00616585
chr21	5972952	5973052	18154290	0	-	0.66	(0.59,1]	chr21	1541259	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CH507-42P11.1	ENSG00000274559.3	ENST00000464664.3	protein_coding	protein_coding	protein_coding	protein_coding	10	130	2	2.10487	2.88808	3.67129	0.00214001	4.23492e-5	0.0207593	8.98949e-4
chr11	14476916	14477015	12281754	0	-	0.484848	(0.455,0.49]	chr11	949625	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.64674	2.8875849999999996	3.12843	0.00392855	5.8716e-4	0.0322851	0.00742908
chr10	43386265	43386357	11461755	0	-	0.434783	(0.42,0.455]	chr10	873953	8	UTR3	UTR3:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	15	113	2	2.40058	2.887295	3.37401	2.74964e-4	2.90588e-7	0.00442981	1.39298e-5
chr16	22286169	22286268	15589656	0	+	0.414141	(0.39,0.42]	chr16	1235909	23	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.62877	2.8870199999999997	3.14527	5.33048e-4	3.044e-4	0.00742114	0.00442277
chr21	45477821	45477893	18145563	0	+	0.694444	(0.59,1]	chr21	1539704	2	CDS	CDS:EXON_MRNA:PRIMIRNA	COL18A1:MIR6815	ENSG00000182871.16:ENSG00000275167.1	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000611994.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	6	104	2	2.58269	2.88698	3.19127	0.0067313	4.28947e-5	0.0461258	9.08523e-4
chr1	77154535	77154621	1109839	0	-	0.418605	(0.39,0.42]	chr1	111538	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PIGK	ENSG00000142892.15	ENST00000370812.8:ENST00000445065.5:ENST00000487906.5:ENST00000359130.1:ENST00000478391.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.71912	2.8868650000000002	3.05461	0.0163125	8.55091e-4	0.0866586	0.0105173
chr20	35700840	35700906	17769584	0	+	0.545455	(0.53,0.59]	chr20	1501215	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ROMO1	ENSG00000125995.16	ENST00000374078.5:ENST00000374077.8:ENST00000374072.5:ENST00000336695.4:ENST00000397416.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.16037	2.886655	3.61294	0.0310038	0.0254312	0.130016	0.117089
chr20	57408539	57408639	17837051	0	+	0.47	(0.455,0.49]	chr20	1508358	8	UTR3	UTR3:EXON_MRNA	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000344785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	1.96949	2.886545	3.8036	0.00919557	1.59194e-4	0.0582809	0.00263091
chr22	20584854	20584934	18299179	0	+	0.6875	(0.59,1]	chr22	1553504	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1:ENST00000461076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	97	2	2.85973	2.8865049999999997	2.91328	7.1836e-4	5.13816e-4	0.00903729	0.00665221
chr19	34393247	34393308	17300487	0	+	0.655738	(0.59,1]	chr19	1429869	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	222	2	2.42089	2.8864549999999998	3.35202	0.00138009	1.20662e-6	0.0149186	4.6842e-5
chr19	40378173	40378251	17328739	0	+	0.75641	(0.59,1]	chr19	1435589	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000486134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	51	2	2.30623	2.886415	3.4666	0.0170607	0.00133574	0.0896731	0.0139317
chr19	1258650	1258749	17192164	0	+	0.464646	(0.455,0.49]	chr19	1411881	15	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1:ENST00000591446.6	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	2.76399	2.88635	3.00871	8.75629e-4	2.11527e-4	0.0106963	0.00328766
chr3	155919285	155919338	3824469	0	+	0.490566	(0.49,0.53]	chr3	326201	2	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	1.73918	2.88635	4.03352	0.0213952	1.50496e-6	0.102813	5.64695e-5
chr1	173477334	173477397	548508	0	+	0.666667	(0.59,1]	chr1	58278	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000460950.1:ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	231	2	2.75417	2.886255	3.01834	9.96763e-5	1.13204e-5	0.00196357	3.06161e-4
chr13	25342023	25342122	13647977	0	+	0.323232	(0.29,0.33]	chr13	1075929	20	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	2.45591	2.88622	3.31653	0.00406506	0.00261621	0.032143	0.0238929
chr17	82056839	82056906	16382422	0	+	0.567164	(0.53,0.59]	chr17	1332412	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPS1	ENSG00000169727.12	ENST00000578552.5:ENST00000320548.8:ENST00000624957.3:ENST00000623691.3:ENST00000306823.10:ENST00000584460.5:ENST00000392358.6:ENST00000623761.3:ENST00000392357.1:ENST00000578279.1:ENST00000578168.1:ENST00000583486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	1.76849	2.88621	4.00393	0.0420665	0.0108084	0.158792	0.064368
chr10	117284132	117284227	11711113	0	-	0.378947	(0.36,0.39]	chr10	893465	9	CDS	CDS:EXON_MRNA	PDZD8	ENSG00000165650.12	ENST00000334464.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.84089	2.886125	2.93136	0.0128123	0.00811967	0.0719798	0.0528637
chr16	69693740	69693840	15725292	0	+	0.38	(0.36,0.39]	chr16	1252127	21	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.84089	2.886125	2.93136	0.0128123	0.00811967	0.0719798	0.0528637
chr6	127655026	127655110	7946488	0	-	0.380952	(0.36,0.39]	chr6	607783	3	EXON_PSEUDO	EXON_PSEUDO	RP11-325O24.1	ENSG00000218187.2	ENST00000405809.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	2.84089	2.886125	2.93136	0.0128123	0.00811967	0.0719798	0.0528637
chr2	171983252	171983352	2208725	0	+	0.41	(0.39,0.42]	chr2	202169	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.01081	2.8861100000000004	3.76141	0.0207537	2.14058e-4	0.100574	0.00359478
chr11	16974852	16974932	12294612	0	-	0.55	(0.53,0.59]	chr11	950268	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PLEKHA7:RP11-466H18.1	ENSG00000166689.16:ENSG00000244398.1	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1:ENST00000459748.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	14	154	2	1.713	2.88606	4.05912	0.00973444	1.80739e-9	0.0609966	1.77175e-7
chr1	65414918	65415017	251476	0	+	0.252525	[0,0.29]	chr1	28747	20	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.16626	2.886055	3.6058500000000002	0.00762503	4.75429e-4	0.0507443	0.00627814
chr15	88899394	88899494	15434278	0	-	0.62	(0.59,1]	chr15	1220381	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MFGE8	ENSG00000140545.15	ENST00000268150.13:ENST00000558018.5:ENST00000268151.11:ENST00000566497.5:ENST00000560937.1:ENST00000542878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	2.3791	2.88601	3.39292	0.00271535	0.00192565	0.0237499	0.0191769
chr2	175925377	175925477	3028091	0	-	0.43	(0.42,0.455]	chr2	268146	16	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.32646	2.885915	3.44537	0.00624136	8.6897e-5	0.0443844	0.00177086
chr10	73152297	73152397	11569424	0	-	0.56	(0.53,0.59]	chr10	880589	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6:ENST00000453402.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.64837	2.885885	3.1234	0.0199467	0.00390623	0.0984041	0.0322851
chr19	3976300	3976384	17430171	0	-	0.547619	(0.53,0.59]	chr19	1454683	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	205	1953	2	2.3092800000000002	2.88587	3.46246	3.35674e-6	3.48334e-11	1.22255e-4	5.31383e-9
chr22	20819813	20819900	18439682	0	-	0.471264	(0.455,0.49]	chr22	1572040	3	CDS	CDS:EXON_MRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	1.95898	2.885865	3.81275	0.047107	0.0138827	0.172269	0.0760883
chr3	15441131	15441229	3325627	0	+	0.469388	(0.455,0.49]	chr3	292874	21	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	1.95898	2.885865	3.81275	0.047107	0.0138827	0.172269	0.0760883
chr3	128101558	128101648	4440390	0	-	0.477778	(0.455,0.49]	chr3	368871	1	CDS	CDS:EXON_MRNA	RUVBL1	ENSG00000175792.12	ENST00000472125.5:ENST00000464873.5:ENST00000322623.10	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.95898	2.885865	3.81275	0.047107	0.0138827	0.172269	0.0760883
chr1	161171915	161172002	1332760	0	-	0.586207	(0.53,0.59]	chr1	136719	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	B4GALT3	ENSG00000158850.15	ENST00000319769.10:ENST00000622395.4:ENST00000470882.5:ENST00000367998.5:ENST00000486938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	24	2	2.65894	2.8858449999999998	3.11275	0.0193255	0.00407571	0.0943643	0.032143
chr22	41527900	41527946	18381083	0	+	0.565217	(0.53,0.59]	chr22	1564630	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1:ENST00000676883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	24	2	2.65894	2.8858449999999998	3.11275	0.0193255	0.00407571	0.0943643	0.032143
chr3	14130888	14130956	3319368	0	+	0.558824	(0.53,0.59]	chr3	292049	2	CDS	CDS:UTR3:EXON_MRNA	TMEM43	ENSG00000170876.8	ENST00000432444.1:ENST00000306077.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.65894	2.8858449999999998	3.11275	0.0193255	0.00407571	0.0943643	0.032143
chr9	122240297	122240396	10840590	0	-	0.323232	(0.29,0.33]	chr9	821234	28	UTR3	UTR3:EXON_MRNA	RBM18	ENSG00000119446.14	ENST00000417201.4	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.14478	2.885805	3.62683	0.00445138	6.18968e-4	0.0340751	0.00822794
chr5	138934656	138934750	6248107	0	+	0.351064	(0.33,0.36]	chr5	486857	7	UTR3	UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000522792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	32	2	2.44986	2.8857150000000003	3.32157	0.00563343	1.77615e-4	0.0422191	0.00287736
chr7	135927748	135927847	9085558	0	-	0.393939	(0.39,0.42]	chr7	693646	11	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	30	214	2	2.35808	2.8856900000000003	3.4133	5.2659e-5	4.33205e-9	0.00117536	3.77089e-7
chr22	39515767	39515865	18370749	0	+	0.418367	(0.39,0.42]	chr22	1563254	5	UTR3	UTR3:EXON_MRNA	MIEF1	ENSG00000100335.15	ENST00000325301.7:ENST00000433117.6:ENST00000404569.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.21029	2.88563	3.56097	0.0100911	6.12149e-4	0.0625052	0.00818575
chr19	6532685	6532785	17213502	0	+	0.52	(0.49,0.53]	chr19	1415915	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TNFSF9	ENSG00000125657.5	ENST00000245817.5	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.49797	2.885625	3.27328	0.00843736	2.21441e-4	0.0546021	0.00341572
chr1	215621014	215621113	714008	0	+	0.353535	(0.33,0.36]	chr1	72144	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000495537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.7655	2.8856149999999996	3.00573	0.0175892	0.00630535	0.0918323	0.044701
chr16	70158963	70159062	15728062	0	+	0.333333	(0.33,0.36]	chr16	1252511	22	UTR3	UTR3:EXON_MRNA	PDPR	ENSG00000090857.14	ENST00000288050.9:ENST00000568530.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.7655	2.8856149999999996	3.00573	0.0175892	0.00630535	0.0918323	0.044701
chr4	109714176	109714276	5594088	0	-	0.36	(0.33,0.36]	chr4	446363	43	UTR3	UTR3:EXON_MRNA	PLA2G12A:AC004067.6	ENSG00000123739.11:ENSG00000285330.1	ENST00000243501.10:ENST00000645635.1:ENST00000502283.1:ENST00000507961.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.7655	2.8856149999999996	3.00573	0.0175892	0.00630535	0.0918323	0.044701
chr11	9384707	9384763	11792247	0	+	0.696429	(0.59,1]	chr11	902794	2	UTR5	UTR5:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.5215	2.88561	3.24972	0.032241	0.00314037	0.135671	0.0264943
chr16	88733277	88733365	16074612	0	-	0.545455	(0.53,0.59]	chr16	1291714	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.86102	2.8853999999999997	2.90978	0.00857883	0.0017805	0.0552386	0.0172974
chr17	63583641	63583711	16317488	0	+	0.571429	(0.53,0.59]	chr17	1323657	3	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.86102	2.8853999999999997	2.90978	0.00857883	0.0017805	0.0552386	0.0172974
chr7	72942926	72943026	8330204	0	+	0.67	(0.59,1]	chr7	634054	12	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	2	39	2	2.59461	2.885385	3.17616	0.0259455	0.00434232	0.117079	0.0339139
chr1	179075780	179075878	575679	0	+	0.459184	(0.455,0.49]	chr1	59700	38	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	2.63549	2.885245	3.135	1.04065e-4	5.32333e-5	0.002022	0.00108172
chr1	86868052	86868102	1144563	0	-	0.4	(0.39,0.42]	chr1	113738	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	36	2	2.67296	2.88516	3.09736	0.00159022	5.79886e-4	0.0168452	0.00734771
chr6	24705743	24705841	7638780	0	-	0.377551	(0.36,0.39]	chr6	581798	10	UTR3	UTR3:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	1.87107	2.885125	3.89918	0.00923108	1.0624e-4	0.0583477	0.00205241
chr5	134197771	134197844	6844112	0	-	0.534247	(0.53,0.59]	chr5	523667	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000472253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	102	2	2.42789	2.885045	3.3422	5.31454e-4	2.39097e-6	0.00740832	8.33915e-5
chr22	22488629	22488725	18444769	0	-	0.385417	(0.36,0.39]	chr22	1572769	9	CDS	CDS:EXON_MRNA	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.56782	2.8849	3.20198	0.00659672	4.4092e-4	0.0460001	0.0062930699999999996
chr8	140528346	140528446	10132126	0	-	0.4	(0.39,0.42]	chr8	760954	83	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	1.87119	2.884835	3.89848	0.0373134	9.30194e-5	0.152293	0.00169783
chr11	14513569	14513634	12282146	0	-	0.446154	(0.42,0.455]	chr11	949716	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1:ENST00000531023.1:ENST00000533331.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	2.70611	2.88483	3.06355	0.00397496	4.61273e-5	0.0322851	9.58657e-4
chr10	119080749	119080823	11717667	0	-	0.702703	(0.59,1]	chr10	893871	2	UTR5	UTR5:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	2.14463	2.884725	3.62482	0.00445434	7.40647e-4	0.0340903	0.00925967
chr10	17229422	17229522	10938768	0	+	0.69	(0.59,1]	chr10	832982	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000497849.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	113	2	2.82148	2.884685	2.94789	7.99341e-4	1.88061e-4	0.00939703	0.0032588
chr16	85781774	85781836	16064841	0	-	0.516129	(0.49,0.53]	chr16	1290539	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	EMC8:RNU1-103P	ENSG00000131148.9:ENSG00000252311.1	ENST00000435200.2:ENST00000253457.8:ENST00000516502.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	4	33	2	2.01464	2.88462	3.7546	0.0205094	2.09468e-4	0.0991175	0.00327655
chr7	7640319	7640418	8669937	0	-	0.555556	(0.53,0.59]	chr7	663484	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	RPA3	ENSG00000106399.11	ENST00000223129.8:ENST00000406109.5:ENST00000396682.6:ENST00000462723.1:ENST00000463632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	2.47	2.8843750000000004	3.29875	0.0089333	0.00191422	0.0567495	0.018324
chr2	149582126	149582198	2933017	0	-	0.5	(0.49,0.53]	chr2	260059	1	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.59881	2.884335	3.16986	0.00184545	3.95698e-4	0.0178046	0.00587341
chr20	36045715	36045813	17955998	0	-	0.367347	(0.36,0.39]	chr20	1521358	2	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	4	28	2	2.76749	2.8843199999999998	3.00115	0.00287858	0.0012486	0.0247002	0.0137762
chr7	151071941	151072038	8617491	0	+	0.628866	(0.59,1]	chr7	658367	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000493040.5:ENST00000460010.1:ENST00000482697.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	38	2	2.77418	2.88428	2.99438	0.0160729	0.00776449	0.0860154	0.050813
chr1	634822	634922	515	0	+	0.37	(0.36,0.39]	chr1	108	14	EXON_PSEUDO	EXON_PSEUDO	MTCO3P12	ENSG00000198744.5	ENST00000416718.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	29	162	2	2.4649200000000002	2.88417	3.30342	1.15326e-5	8.03571e-8	3.41002e-4	4.63851e-6
chr12	120699108	120699207	13117497	0	+	0.323232	(0.29,0.33]	chr12	1024005	27	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	38	2	2.71017	2.88416	3.05815	8.23733e-4	1.75443e-4	0.010214	0.00284534
chr11	63997446	63997546	11978218	0	+	0.58	(0.53,0.59]	chr11	918621	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OTUB1	ENSG00000167770.12	ENST00000422031.6:ENST00000301453.7:ENST00000541478.5:ENST00000535715.5:ENST00000428192.6:ENST00000538426.6:ENST00000543004.5:ENST00000543988.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	2.37402	2.8840899999999996	3.39416	0.00230837	0.00126006	0.0211205	0.013837
chr17	78214693	78214793	16367965	0	+	0.56	(0.53,0.59]	chr17	1329630	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000590925.6:ENST00000374948.6:ENST00000590449.1:ENST00000592734.5:ENST00000592115.5:ENST00000586192.5:ENST00000587746.5:ENST00000591800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	61	2	2.38191	2.8840500000000002	3.38619	0.00477439	2.01278e-5	0.0368489	4.89797e-4
chr17	81510926	81511017	16707870	0	-	0.637363	(0.59,1]	chr17	1377333	1	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	248	2	2.75137	2.88403	3.01669	6.22159e-5	2.0133e-5	0.00134309	4.89891e-4
chr5	1318191	1318279	6423297	0	-	0.477273	(0.455,0.49]	chr5	500659	6	UTR3	UTR3:EXON_MRNA	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503534.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	2.27492	2.88399	3.49306	0.0193827	6.07633e-5	0.0943643	0.00121305
chr1	171485529	171485597	536524	0	+	0.558824	(0.53,0.59]	chr1	57558	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000392078.7:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.54844	2.8839249999999996	3.21941	0.00663226	0.00266171	0.0461575	0.0240332
chr5	83054619	83054717	6673223	0	-	0.530612	(0.53,0.59]	chr5	515109	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.54844	2.8839249999999996	3.21941	0.00663226	0.00266171	0.0461575	0.0240332
chr3	82807267	82807361	4305431	0	-	0.5	(0.49,0.53]	chr3	359353	9	EXON_PSEUDO	EXON_PSEUDO	CYP51A1P1	ENSG00000241095.1	ENST00000492267.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	48	2	1.56402	2.88389	4.20376	0.0228477	1.43152e-5	0.105592	4.04062e-4
chr11	61316491	61316567	12404068	0	-	0.513158	(0.49,0.53]	chr11	960227	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000537877.5:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000538280.1:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	33	2	2.38097	2.8837200000000003	3.38647	0.0425419	1.15525e-4	0.167547	0.00204405
chrX	152766705	152766805	19272355	0	-	0.51	(0.49,0.53]	chrX	1637048	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAGEA6	ENSG00000197172.10	ENST00000329342.9:ENST00000616035.4	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.38097	2.8837200000000003	3.38647	0.0425419	1.15525e-4	0.167547	0.00204405
chr11	47424114	47424183	12386608	0	-	0.565217	(0.53,0.59]	chr11	956867	2	CDS	CDS:UTR3:EXON_MRNA	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5:ENST00000527906.5:ENST00000526993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.14885	2.883705	3.61856	0.0303021	0.0262993	0.129773	0.117164
chr20	38139492	38139573	17963033	0	-	0.555556	(0.53,0.59]	chr20	1522330	2	CDS	CDS:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000468262.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.14885	2.883705	3.61856	0.0303021	0.0262993	0.129773	0.117164
chr11	119089708	119089760	12161977	0	+	0.596154	(0.59,1]	chr11	937713	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000536185.5:ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000543821.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	51	2	2.32384	2.8831100000000003	3.44238	0.0157639	0.00158239	0.0851539	0.0167793
chr16	3686046	3686136	15830776	0	-	0.522222	(0.49,0.53]	chr16	1263685	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5:ENST00000571011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	59	2	2.38683	2.88309	3.37935	0.012654	4.98514e-6	0.0718207	1.54467e-4
chr10	72274877	72274947	11111172	0	+	0.714286	(0.59,1]	chr10	845357	1	CDS	CDS:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	1.90454	2.882965	3.86139	0.0116061	2.54973e-4	0.0680428	0.00417441
chr6	31627125	31627198	7115804	0	+	0.753425	(0.59,1]	chr6	545846	3	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.11074	2.8829149999999997	3.65509	0.0305	5.95213e-4	0.130204	0.00746384
chr6	63212643	63212738	7204417	0	+	0.347368	(0.33,0.36]	chr6	556454	9	UTR3	UTR3:EXON_MRNA	FKBP1C	ENSG00000198225.5	ENST00000370659.1	protein_coding	protein_coding	protein_coding	protein_coding	11	52	2	2.0104	2.8829000000000002	3.7554	0.00193781	1.62733e-5	0.0185117	4.52905e-4
chr10	72190303	72190394	11110949	0	+	0.32967	(0.29,0.33]	chr10	845318	5	EXON_PSEUDO	EXON_PSEUDO	RPL15P14	ENSG00000226701.1	ENST00000416278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	51	2	1.99389	2.8828199999999997	3.77175	0.00896841	1.12402e-6	0.0569518	4.41253e-5
chr19	18030628	18030695	17256828	0	+	0.522388	(0.49,0.53]	chr19	1424993	1	EXON_PSEUDO	EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	CTB-52I2.4	ENSG00000273654.1	ENST00000621646.1:ENST00000614660.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	20	2	2.03065	2.8827949999999998	3.73494	0.0189484	0.0189345	0.0958835	0.0934721
chr2	167900731	167900782	2998636	0	-	0.509804	(0.49,0.53]	chr2	265453	1	EXON_LNCRNA	EXON_LNCRNA	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	3	20	2	2.03065	2.8827949999999998	3.73494	0.0189484	0.0189345	0.0958835	0.0934721
chr8	73293612	73293633	9888207	0	-	0.571429	(0.53,0.59]	chr8	747636	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5	protein_coding	protein_coding	protein_coding	protein_coding	175	1534	2	2.45533	2.882695	3.31006	9.4861e-7	2.46652e-10	4.23283e-5	3.03001e-8
chr1	32669051	32669132	130294	0	+	0.432099	(0.42,0.455]	chr1	16088	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000531983.1:ENST00000463378.5:ENST00000460669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	47	2	2.68545	2.88265	3.07985	0.00135767	1.37948e-4	0.0146849	0.00233981
chr12	56104737	56104825	12898000	0	+	0.568182	(0.53,0.59]	chr12	1004121	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	2.55633	2.882535	3.20874	0.00278422	4.55091e-4	0.0241009	0.006455
chr15	41279788	41279888	14885229	0	+	0.37	(0.36,0.39]	chr15	1169243	5	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	26	153	2	2.71311	2.882475	3.05184	2.28097e-6	8.77163e-7	8.02937e-5	3.96914e-5
chr19	18280143	18280242	17499041	0	-	0.777778	(0.59,1]	chr19	1468046	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JUND	ENSG00000130522.6	ENST00000252818.5:ENST00000600972.1	protein_coding	protein_coding	protein_coding	protein_coding	9	126	2	2.54203	2.882215	3.2224	4.73062e-4	2.87719e-4	0.00668763	0.00423277
chr19	38374890	38374961	17320674	0	+	0.549296	(0.53,0.59]	chr19	1433549	1	CDS	CDS:EXON_MRNA	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	37	2	2.36991	2.882035	3.39416	0.00501452	0.00126006	0.0370872	0.013837
chr18	9399626	9399726	16753328	0	+	0.28	[0,0.29]	chr18	1381535	2	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	2.47808	2.8819549999999996	3.28583	0.00346525	8.43399e-4	0.0293796	0.00984729
chrX	153694129	153694198	18915627	0	+	0.594203	(0.59,1]	chrX	1611192	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1:ENST00000457723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	144	2	2.39517	2.8818	3.36843	6.29382e-4	5.25099e-5	0.00782622	0.00117229
chr17	49042241	49042309	16256558	0	+	0.5	(0.49,0.53]	chr17	1317650	1	CDS	CDS:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.72252	2.881795	3.04107	0.0161474	0.00533879	0.0860154	0.0392268
chr21	43565181	43565238	18135368	0	+	0.508772	(0.49,0.53]	chr21	1538157	1	UTR5	UTR5:EXON_MRNA	H2BS1	ENSG00000234289.6	ENST00000599962.2	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.72252	2.881795	3.04107	0.0161474	0.00533879	0.0860154	0.0392268
chr9	98086592	98086689	10759991	0	-	0.505155	(0.49,0.53]	chr9	814726	24	UTR3	UTR3:EXON_MRNA:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1:ENST00000341469.7:ENST00000342043.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.72252	2.881795	3.04107	0.0161474	0.00533879	0.0860154	0.0392268
chrX	71240020	71240119	19106933	0	-	0.50505	(0.49,0.53]	chrX	1625381	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.72252	2.881795	3.04107	0.0161474	0.00533879	0.0860154	0.0392268
chr20	25866234	25866327	17936228	0	-	0.55914	(0.53,0.59]	chr20	1518564	6	INTRON	INTRON	FAM182B	ENSG00000175170.16	ENST00000478164.1:ENST00000662978.1:ENST00000485279.2:ENST00000582267.5:ENST00000661999.1	lncRNA	lncRNA	lncRNA	lncRNA	4	41	2	2.63316	2.881295	3.12943	0.00474401	4.81557e-4	0.0361423	0.00677016
chr19	57292907	57293004	17405789	0	+	0.340206	(0.33,0.36]	chr19	1450092	8	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.84841	2.881125	2.91384	0.0021527	0.0020676	0.0208395	0.0194849
chr1	108939635	108939708	1217954	0	-	0.438356	(0.42,0.455]	chr1	118644	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	46	2	2.76546	2.8810599999999997	2.99666	0.00104775	2.96831e-4	0.0123035	0.0043341
chr1	44747434	44747485	173848	0	+	0.470588	(0.455,0.49]	chr1	22317	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.51261	2.88087	3.24913	0.00280343	0.00239443	0.0242354	0.0225356
chr19	12796993	12797080	17470946	0	-	0.643678	(0.59,1]	chr19	1463171	3	UTR3	UTR3:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	172	2	2.70963	2.88071	3.05179	3.32163e-4	2.35289e-5	0.00506816	5.56717e-4
chr7	133034915	133035007	9078005	0	-	0.521739	(0.49,0.53]	chr7	693067	1	EXON_PSEUDO	EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	protein_coding	miRNA:protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	24	181	2	2.87908	2.88058	2.88208	3.49165e-6	9.67259e-7	1.26266e-4	3.88631e-5
chr16	81031289	81031387	15767802	0	+	0.357143	(0.33,0.36]	chr16	1255241	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CENPN:RP11-303E16.2	ENSG00000166451.14:ENSG00000261061.1	ENST00000393335.7:ENST00000305850.10:ENST00000566639.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	21	2	2.28792	2.8804600000000002	3.473	0.0239159	8.77304e-4	0.112531	0.0101202
chr3	72377191	72377290	4278867	0	-	0.353535	(0.33,0.36]	chr3	358375	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RYBP	ENSG00000163602.11	ENST00000477973.4:ENST00000676660.1:ENST00000677329.1:ENST00000676841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	2.28792	2.8804600000000002	3.473	0.0239159	8.77304e-4	0.112531	0.0101202
chr11	108219714	108219813	12587136	0	-	0.272727	[0,0.29]	chr11	976161	108	INTRON	INTRON	NPAT	ENSG00000149308.17	ENST00000278612.9:ENST00000610253.5:ENST00000531384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	2.15488	2.8803650000000003	3.6058500000000002	0.0436536	4.75429e-4	0.170594	0.00627814
chr18	59330992	59331092	17142343	0	-	0.27	[0,0.29]	chr18	1407602	33	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000592562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.15488	2.8803650000000003	3.6058500000000002	0.0436536	4.75429e-4	0.170594	0.00627814
chr6	33201422	33201500	7121272	0	+	0.551282	(0.53,0.59]	chr6	547377	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	2.37399	2.880315	3.38664	0.0126178	5.10107e-6	0.0717599	1.57702e-4
chr1	231364341	231364439	1548243	0	-	0.540816	(0.53,0.59]	chr1	155129	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.14205	2.880305	3.61856	0.0303021	0.0123179	0.129773	0.070688
chrX	101395334	101395396	18786385	0	+	0.435484	(0.42,0.455]	chrX	1601420	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	RPL36A:RPL36A-HNRNPH2	ENSG00000241343.10:ENSG00000257529.5	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000409338.5:ENST00000553110.8:ENST00000409170.3:ENST00000372849.8:ENST00000465744.5:ENST00000471855.1:ENST00000489407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	106	2	2.79031	2.880305	2.9703	1.58654e-5	1.10067e-5	4.43799e-4	2.98164e-4
chr10	91222871	91222971	11187175	0	+	0.39	(0.36,0.39]	chr10	850382	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000496708.1:ENST00000336126.6:ENST00000490164.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	34	2	2.75914	2.8801449999999997	3.00115	0.0012486	8.69953e-4	0.0137762	0.0101157
chr2	169811910	169811987	2197829	0	+	0.272727	[0,0.29]	chr2	201141	3	UTR3	UTR3:EXON_MRNA	SSB	ENSG00000138385.16	ENST00000260956.9:ENST00000409333.1	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.31133	2.88006	3.44879	0.00696038	1.37282e-5	0.0474632	3.56831e-4
chr10	70422244	70422344	11100453	0	+	0.49	(0.455,0.49]	chr10	844350	6	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.66563	2.88004	3.09445	0.0043075	6.1765e-4	0.0334284	0.00822794
chrX	52514806	52514904	19073866	0	-	0.489796	(0.455,0.49]	chrX	1621962	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	XAGE1B	ENSG00000204382.11	ENST00000375616.5:ENST00000375613.7:ENST00000375612.8:ENST00000494039.1:ENST00000518075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	30	2	2.35972	2.879905	3.40009	0.0058634	0.00120619	0.0427941	0.0129255
chr1	148751442	148751539	458213	0	+	0.278351	[0,0.29]	chr1	45663	21	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	2.70065	2.8798649999999997	3.05908	5.07704e-4	1.30246e-4	0.00660682	0.00243336
chr16	28835338	28835399	15620386	0	+	0.688525	(0.59,1]	chr16	1238472	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1:ENST00000562686.1:ENST00000569318.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	10	147	2	2.6593	2.879635	3.09997	2.20596e-4	1.49607e-4	0.00367555	0.0024973
chr1	183553399	183553498	598031	0	+	0.535354	(0.53,0.59]	chr1	62141	3	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	50	2	2.23406	2.879505	3.52495	0.00870728	5.15316e-5	0.0558165	0.00105223
chr2	159748303	159748403	2163034	0	+	0.43	(0.42,0.455]	chr2	199192	6	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	2.40387	2.87939	3.35491	0.00231472	1.39104e-4	0.0219615	0.00235518
chr6	31880760	31880848	7663014	0	-	0.522727	(0.49,0.53]	chr6	585503	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EHMT2	ENSG00000204371.11	ENST00000375537.8:ENST00000375530.8:ENST00000375528.8:ENST00000395728.7:ENST00000480912.5:ENST00000494816.5:ENST00000461880.5:ENST00000478491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	19	2	1.81659	2.87918	3.94177	0.0376859	0.0104929	0.147713	0.063428
chr11	90202305	90202404	12542498	0	-	0.373737	(0.36,0.39]	chr11	973126	20	UTR3	UTR3:EXON_MRNA	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000529987.5:ENST00000457199.6:ENST00000533724.5:ENST00000529726.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.05966	2.8790050000000003	3.69835	0.0366015	3.2708e-4	0.145024	0.00502339
chr13	46142358	46142425	14009767	0	-	0.477612	(0.455,0.49]	chr13	1098508	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	2.76399	2.8789350000000002	2.99388	8.75629e-4	1.27969e-5	0.0106963	3.36748e-4
chr5	1333038	1333132	6423469	0	-	0.510638	(0.49,0.53]	chr5	500716	8	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	50	2	2.66439	2.878875	3.09336	0.00134122	1.28432e-4	0.0139818	0.00241206
chr16	28735513	28735584	15619343	0	+	0.535211	(0.53,0.59]	chr16	1238335	1	UTR3	UTR3:EXON_MRNA:INTRON	RP11-231C14.10:EIF3C	ENSG00000288630.1:ENSG00000184110.15	ENST00000675058.1:ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5:ENST00000566086.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	31	2	2.37399	2.87873	3.38347	0.0126178	0.00132446	0.0717599	0.0138834
chr17	44854555	44854618	16559946	0	-	0.571429	(0.53,0.59]	chr17	1359708	1	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.37399	2.87873	3.38347	0.0126178	0.00132446	0.0717599	0.0138834
chr5	134225761	134225861	6844408	0	-	0.58	(0.53,0.59]	chr5	523717	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2410N18.5:PPP2CA:CTD-2410N18.4	ENSG00000272772.1:ENSG00000113575.10:ENSG00000273345.5	ENST00000519718.1:ENST00000481195.6:ENST00000231504.5:ENST00000520515.5:ENST00000518409.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	3	31	2	2.37399	2.87873	3.38347	0.0126178	0.00132446	0.0717599	0.0138834
chr16	75636000	75636089	16039164	0	-	0.382022	(0.36,0.39]	chr16	1288327	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5:ENST00000566772.1:ENST00000568682.5:ENST00000570215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	52	2	2.27411	2.87872	3.48333	0.00289952	9.78237e-6	0.0258199	2.71468e-4
chr6	78946173	78946260	7805152	0	-	0.413793	(0.39,0.42]	chr6	597917	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHIP	ENSG00000146247.14	ENST00000275034.5:ENST00000479165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.86895	2.878655	2.88836	0.0102432	0.00177945	0.062872	0.0172974
chr19	44878297	44878372	17349379	0	+	0.64	(0.59,1]	chr19	1439153	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1:ENST00000585601.1	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.76802	2.87857	2.9891200000000002	0.0158525	0.00823979	0.0854671	0.0540283
chr10	32922639	32922735	11444115	0	-	0.34375	(0.33,0.36]	chr10	872662	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	78	2	2.50997	2.8785350000000003	3.2471	9.74806e-4	7.97183e-7	0.0116117	3.29647e-5
chr1	99738085	99738176	1197641	0	-	0.450549	(0.42,0.455]	chr1	116890	1	CDS	CDS:EXON_MRNA	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.51988	2.878475	3.23707	0.00300574	2.71467e-4	0.0267032	0.00404536
chr17	44035019	44035118	16556061	0	-	0.454545	(0.42,0.455]	chr17	1358855	8	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.51988	2.878475	3.23707	0.00300574	2.71467e-4	0.0267032	0.00404536
chr4	150808319	150808398	5730924	0	-	0.392405	(0.39,0.42]	chr4	452845	1	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	1.99911	2.87832	3.75753	0.0477207	2.04026e-4	0.17993	0.00320361
chr1	19122908	19122984	876117	0	-	0.565789	(0.53,0.59]	chr1	90070	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.63316	2.87828	3.1234	0.00474401	0.00390623	0.0361423	0.0322851
chr17	39203085	39203109	16219476	0	+	0.416667	(0.39,0.42]	chr17	1310965	1	CDS	CDS:UTR3:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	142	2	2.24343	2.87826	3.51309	3.08313e-4	2.04185e-8	0.00476847	1.43102e-6
chr18	57573245	57573343	17137309	0	-	0.469388	(0.455,0.49]	chr18	1407113	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000682485.1:ENST00000592699.6:ENST00000585699.1:ENST00000585747.1:ENST00000585878.1:ENST00000592111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	2.26324	2.8781499999999998	3.49306	0.00868189	6.07633e-5	0.0558093	0.00121305
chr10	74122920	74123019	11575823	0	-	0.30303	(0.29,0.33]	chr10	881667	28	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.83531	2.87798	2.92065	0.0117842	0.00228447	0.0686664	0.0209856
chr18	77971702	77971798	17184242	0	-	0.322917	(0.29,0.33]	chr18	1410244	12	EXON_LNCRNA	EXON_LNCRNA	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000577408.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1	lncRNA	lncRNA	lncRNA	lncRNA	8	42	2	2.50329	2.87798	3.25267	0.00142661	2.58339e-5	0.0146595	6.64778e-4
chr5	168551186	168551286	6968929	0	-	0.3	(0.29,0.33]	chr5	532791	28	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.83531	2.87798	2.92065	0.0117842	0.00228447	0.0686664	0.0209856
chr16	15037058	15037156	15562406	0	+	0.510204	(0.49,0.53]	chr16	1232374	9	UTR3	UTR3:EXON_MRNA:INTRON	PDXDC1	ENSG00000179889.19	ENST00000535621.6:ENST00000396410.9:ENST00000570001.5:ENST00000569715.5:ENST00000450288.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	37	2	2.2359	2.8778550000000003	3.51981	0.00449268	6.88328e-4	0.0343656	0.00876781
chr10	19052468	19052568	10947414	0	+	0.49	(0.455,0.49]	chr10	833636	4	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.29155	2.87772	3.46389	0.00354718	9.14164e-4	0.0291792	0.0110519
chr1	214640114	214640211	710421	0	+	0.329897	(0.29,0.33]	chr1	71905	3	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.67277	2.87769	3.08261	0.0255386	0.0048227	0.117089	0.0365653
chr21	9112892	9112992	18157973	0	-	0.3	(0.29,0.33]	chr21	1541809	299	INTRON	INTRON	TEKT4P2	ENSG00000188681.11	ENST00000416067.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	15	2	2.67277	2.87769	3.08261	0.0255386	0.0048227	0.117089	0.0365653
chr1	108638428	108638527	394968	0	+	0.383838	(0.36,0.39]	chr1	38052	34	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	44	2	2.84089	2.877605	2.91432	0.0128123	4.97991e-5	0.0719798	0.00102381
chr1	47217563	47217661	985525	0	-	0.438776	(0.42,0.455]	chr1	104046	14	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.51372	2.877525	4.24133	0.0346574	0.00326918	0.141505	0.0282494
chr11	62575957	62576052	12409184	0	-	0.684211	(0.59,1]	chr11	960987	9	CDS	CDS:EXON_MRNA:INTRON	RP11-864I4.1:TUT1	ENSG00000255508.7:ENSG00000149016.16	ENST00000496634.2:ENST00000526409.5:ENST00000534745.1:ENST00000308436.11:ENST00000476907.6:ENST00000469480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.03921	2.877435	3.71566	0.0487443	0.0371471	0.175495	0.151849
chr1	50326812	50326909	187870	0	+	0.587629	(0.53,0.59]	chr1	24236	8	EXON_PSEUDO	EXON_PSEUDO	RP11-183G22.1	ENSG00000234080.3	ENST00000423464.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	40	2	2.84458	2.87718	2.90978	0.00857883	5.21436e-4	0.0552386	0.00674101
chr2	108587311	108587411	1981457	0	+	0.42	(0.39,0.42]	chr2	188118	524	INTRON	INTRON	LIMS1	ENSG00000169756.16	ENST00000544547.5:ENST00000428064.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.55844	2.87716	3.19588	0.0263695	0.00321212	0.117164	0.0280721
chr2	197503076	197503176	2292631	0	+	0.33	(0.29,0.33]	chr2	207883	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPE1:HSPE1-MOB4	ENSG00000115541.11:ENSG00000270757.1	ENST00000409729.1:ENST00000233893.10:ENST00000409468.1:ENST00000604458.1:ENST00000465573.1:ENST00000463841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	26	2	2.27431	2.87716	3.48001	0.00432139	0.00126219	0.0335176	0.013837
chr7	120970687	120970783	8493656	0	+	0.395833	(0.39,0.42]	chr7	648273	1	CDS	CDS:UTR3:EXON_MRNA	ING3	ENSG00000071243.16	ENST00000315870.10:ENST00000427726.5:ENST00000431467.1:ENST00000497502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.55844	2.87716	3.19588	0.0263695	0.00321212	0.117164	0.0280721
chr2	159747804	159747903	2163029	0	+	0.373737	(0.36,0.39]	chr2	199192	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000473749.1:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	54	2	2.56789	2.877155	3.18642	0.00359152	8.585e-5	0.0302391	0.00160731
chr3	47870812	47870909	4163953	0	-	0.57732000000000006	(0.53,0.59]	chr3	348527	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3	protein_coding	protein_coding	protein_coding	protein_coding	7	71	2	2.45052	2.87698	3.30344	0.00355092	9.28103e-6	0.0300049	2.58687e-4
chr12	54236964	54237064	13342896	0	-	0.34	(0.33,0.36]	chr12	1049602	56	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	18	100	2	2.7991	2.87691	2.95472	1.4715900000000001e-05	2.85153e-6	4.14197e-4	9.65121e-5
chr20	44908432	44908532	17799171	0	+	0.28	[0,0.29]	chr20	1504696	21	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.61628	2.876905	3.13753	0.0101434	0.00396668	0.0626311	0.0317467
chr8	47776913	47776983	9815494	0	-	0.285714	[0,0.29]	chr8	742462	2	CDS	CDS:EXON_MRNA:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.61628	2.876905	3.13753	0.0101434	0.00396668	0.0626311	0.0317467
chr8	18027662	18027740	9215440	0	+	0.333333	(0.33,0.36]	chr8	704196	1	UTR3	UTR3:EXON_MRNA	PCM1	ENSG00000078674.18	ENST00000325083.12:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5:ENST00000519802.5:ENST00000523896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.28465	2.876865	3.46908	0.0188404	0.00114872	0.0958835	0.0130528
chr5	32415114	32415187	6519512	0	-	0.520548	(0.49,0.53]	chr5	505033	3	CDS	CDS:EXON_MRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000505366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	45	2	2.11783	2.876815	3.6358	0.0142725	2.45857e-5	0.0780078	5.74553e-4
chr19	7962694	7962793	17447937	0	-	0.484848	(0.455,0.49]	chr19	1458189	12	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.26324	2.876785	3.49033	0.00868189	7.92678e-4	0.0558093	0.00933379
chr9	97927185	97927284	10759622	0	-	0.292929	(0.29,0.33]	chr9	814684	5	UTR3	UTR3:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	51	207	2	2.0126	2.87677	3.74094	7.2403e-5	5.70111e-10	0.00138975	7.00888e-8
chr5	111499489	111499588	6761005	0	-	0.454545	(0.42,0.455]	chr5	519141	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5:ENST00000511137.5:ENST00000502931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	58	2	2.44756	2.87665	3.30574	9.46189e-4	3.3047e-5	0.0113687	7.30918e-4
chr16	51646500	51646590	15663190	0	+	0.522222	(0.49,0.53]	chr16	1244824	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000565308.2:ENST00000562726.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.49797	2.8765549999999998	3.25514	0.00843736	0.00227467	0.0546021	0.0209546
chr1	229516780	229516880	1542517	0	-	0.24	[0,0.29]	chr1	154512	3	UTR3	UTR3:EXON_MRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.67953	2.8765150000000004	3.0735	0.00785095	0.0046416	0.0520241	0.0354333
chr6	52277534	52277611	7736729	0	-	0.493506	(0.49,0.53]	chr6	593735	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	44	2	2.69746	2.87629	3.05512	0.00380414	1.59562e-4	0.0317723	0.00263091
chr17	39410229	39410327	16535864	0	-	0.489796	(0.455,0.49]	chr17	1354013	28	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.75587	2.876285	2.9967	0.00650423	0.00293507	0.0454205	0.025146
chr3	48747684	48747784	4170011	0	-	0.46	(0.455,0.49]	chr3	350020	12	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13:ENST00000454963.5	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.75587	2.876285	2.9967	0.00650423	0.00293507	0.0454205	0.025146
chr6	152975099	152975196	8029548	0	-	0.350515	(0.33,0.36]	chr6	614134	3	CDS	CDS:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.78095	2.87626	2.97157	0.00388614	2.7996e-4	0.0322851	0.00413887
chr3	194404146	194404245	4654481	0	-	0.323232	(0.29,0.33]	chr3	384345	16	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.62025	2.876185	3.13212	0.00573581	0.00551048	0.0417422	0.0414592
chrX	120436591	120436690	19196125	0	-	0.313131	(0.29,0.33]	chrX	1631971	2	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.62025	2.876185	3.13212	0.00573581	0.00551048	0.0417422	0.0414592
chr1	8874908	8874917	852524	0	-	0.444444	(0.42,0.455]	chr1	85968	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1:ENST00000646156.1:ENST00000643438.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.8096	2.876115	2.94263	0.00766873	0.00253237	0.0503696	0.0233955
chr6	2889064	2889164	7570632	0	-	0.35	(0.33,0.36]	chr6	577661	19	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.72827	2.876105	3.02394	8.89743e-4	2.69438e-4	0.0102057	0.00434514
chr1	155478678	155478777	1309211	0	-	0.434343	(0.42,0.455]	chr1	132425	9	CDS	CDS:UTR3:EXON_MRNA	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.69266	2.8761	4.05954	0.0354788	0.00617886	0.143019	0.0439741
chr1	179063926	179064012	575556	0	+	0.418605	(0.39,0.42]	chr1	59682	1	CDS	CDS:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.86368	2.87602	2.88836	0.0102432	0.0101619	0.062872	0.0627153
chr1	220195297	220195377	1512347	0	-	0.4125	(0.39,0.42]	chr1	151333	1	CDS	CDS:EXON_MRNA:INTRON	RAB3GAP2	ENSG00000118873.16	ENST00000358951.7:ENST00000478976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.86368	2.87602	2.88836	0.0102432	0.0101619	0.062872	0.0627153
chr4	110050638	110050737	5595059	0	-	0.414141	(0.39,0.42]	chr4	446473	49	UTR3	UTR3:EXON_MRNA	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.86368	2.87602	2.88836	0.0102432	0.0101619	0.062872	0.0627153
chr17	32365408	32365487	16200597	0	+	0.556962	(0.53,0.59]	chr17	1308175	2	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	95	2	2.43271	2.8760149999999998	3.31932	9.01417e-4	2.84671e-6	0.0109447	9.64791e-5
chr9	97930330	97930429	10759654	0	-	0.353535	(0.33,0.36]	chr9	814691	4	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	30	175	2	2.76881	2.87598	2.98315	7.96612e-6	9.6033e-8	2.49448e-4	5.39433e-6
chr11	63758891	63758991	11976857	0	+	0.5	(0.49,0.53]	chr11	918385	6	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	2.38935	2.87581	3.36227	0.00488689	2.26725e-5	0.0376157	5.39086e-4
chr19	13778293	13778389	17240459	0	+	0.541667	(0.53,0.59]	chr19	1421397	2	UTR3	UTR3:EXON_MRNA	C19orf53	ENSG00000104979.9	ENST00000588234.6:ENST00000221576.4:ENST00000588858.5:ENST00000588841.1:ENST00000593274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.88327	2.87568	3.86809	0.0298124	1.18973e-4	0.129773	0.00207755
chr11	72006186	72006263	12447061	0	-	0.571429	(0.53,0.59]	chr11	967242	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUMA1	ENSG00000137497.18	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000541584.5:ENST00000540626.5:ENST00000613205.4:ENST00000620566.4:ENST00000616538.4:ENST00000541262.5:ENST00000545721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.27113	2.87552	3.47991	0.0178853	6.7738e-5	0.0918323	0.0013157
chr1	149886259	149886359	1287106	0	-	0.68	(0.59,1]	chr1	127852	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	11	167	2	2.73991	2.875505	3.0111	1.19375e-4	1.08105e-4	0.00208353	0.00208056
chr1	28201150	28201247	912953	0	-	0.546392	(0.53,0.59]	chr1	95445	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	57	2	2.84458	2.87545	2.90632	5.21436e-4	3.72925e-4	0.00674101	0.00559101
chr13	46126901	46127000	14009609	0	-	0.484848	(0.455,0.49]	chr13	1098488	11	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.74211	2.87541	3.00871	0.00330545	2.11527e-4	0.028478	0.00328766
chr8	116657214	116657314	10034032	0	-	0.41	(0.39,0.42]	chr8	755344	1	CDS	CDS:UTR3:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000520289.1:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	127	2	2.65899	2.875075	3.09116	8.66237e-5	3.80653e-7	0.00177086	1.7481e-5
chr15	83018066	83018166	15416739	0	-	0.31	(0.29,0.33]	chr15	1219172	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.54643	2.87505	3.20367	0.0026976	6.11481e-4	0.0236059	0.00818575
chr2	74211198	74211291	1891703	0	+	0.376344	(0.36,0.39]	chr2	179189	1	CDS	CDS:UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	47	2	1.66836	2.874955	4.08155	0.0474647	9.85897e-7	0.17993	3.94225e-5
chr5	122029632	122029732	6184792	0	+	0.42	(0.39,0.42]	chr5	482297	11	INTRON	INTRON	SRFBP1	ENSG00000151304.6	ENST00000504881.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	16	2	2.01677	2.874855	3.73294	0.0235818	0.0190864	0.111323	0.0958835
chr20	50082186	50082283	18004129	0	-	0.546392	(0.53,0.59]	chr20	1525944	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	83	2	2.4751	2.87485	3.2746	7.16255e-4	1.13758e-5	0.00901405	3.07542e-4
chr17	59648239	59648283	16295093	0	+	0.431818	(0.42,0.455]	chr17	1321615	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000585198.1:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.32656	2.87483	3.4231	0.00298867	0.00112541	0.0255712	0.0128481
chr11	9588799	9588898	11793799	0	+	0.444444	(0.42,0.455]	chr11	903118	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	45	2	2.66761	2.874715	3.08182	6.80627e-4	5.19201e-4	0.00876781	0.00671984
chr3	48468079	48468173	4167339	0	-	0.553191	(0.53,0.59]	chr3	348993	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SHISA5	ENSG00000164054.16	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000465449.5:ENST00000426002.5:ENST00000494854.5:ENST00000466424.5:ENST00000442747.5:ENST00000417962.5:ENST00000612611.1:ENST00000443308.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	37	2	2.0693	2.8746150000000004	3.67993	0.0160468	3.22778e-4	0.0860154	0.0046122
chr1	244856134	244856158	1591299	0	-	0.5	(0.49,0.53]	chr1	158399	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1:ENST00000640119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	48	2	2.38683	2.87455	3.36227	0.012654	2.26725e-5	0.0718207	5.39086e-4
chr17	7241359	7241432	16429085	0	-	0.479452	(0.455,0.49]	chr17	1339323	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA	GABARAP:CTD-2545G14.7	ENSG00000170296.10:ENSG00000262526.2	ENST00000302386.10:ENST00000577035.5:ENST00000570760.2:ENST00000570856.1:ENST00000571129.5:ENST00000571253.1:ENST00000573928.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	61	2	2.83283	2.874525	2.91622	6.06795e-4	4.8361e-5	0.00817698	9.97179e-4
chr1	113974799	113974898	418223	0	+	0.343434	(0.33,0.36]	chr1	41199	14	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.14668	2.87433	3.60198	0.00265444	6.01238e-4	0.023248	0.00811676
chr4	98880443	98880540	5547677	0	-	0.268041	[0,0.29]	chr4	443076	13	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.96606	2.87409	3.78212	0.0100719	3.32518e-4	0.0624353	0.00506816
chr1	155721516	155721590	484407	0	+	0.554054	(0.53,0.59]	chr1	50953	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000608852.1:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	37	2	2.05734	2.873995	3.69065	0.0167029	3.04331e-4	0.0883198	0.00472028
chr9	121193360	121193412	10836014	0	-	0.288462	[0,0.29]	chr9	820955	1	CDS_START	CDS_START:CDS:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.50979	2.873915	3.23804	0.00608277	5.85812e-5	0.0438976	0.00117676
chr1	113973217	113973314	418207	0	+	0.56701	(0.53,0.59]	chr1	41197	3	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	2.79311	2.8737399999999997	2.95437	6.84253e-4	2.85501e-4	0.00836671	0.00456926
chr10	73375795	73375895	11571400	0	-	0.26	[0,0.29]	chr10	880849	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000463788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	2.63485	2.87371	3.11257	0.00120521	7.34761e-4	0.0134827	0.00880003
chrX	151973411	151973505	19267769	0	-	0.531915	(0.53,0.59]	chrX	1636824	9	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.37399	2.873645	3.3733	0.0529193	0.0126178	0.18423900000000001	0.0717599
chr8	116658812	116658896	10034050	0	-	0.464286	(0.455,0.49]	chr8	755349	1	CDS	CDS:UTR3:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	128	2	2.59492	2.87345	3.15198	1.29168e-5	3.80397e-6	3.39774e-4	1.3492e-4
chr17	68035703	68035771	16333730	0	+	0.588235	(0.53,0.59]	chr17	1325102	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	48	2	2.51602	2.873435	3.2308500000000002	0.00264912	2.81517e-4	0.024013	0.00415519
chr3	121494608	121494708	3699687	0	+	0.55	(0.53,0.59]	chr3	316099	6	EXON_PSEUDO	EXON_PSEUDO	RPL7AP11	ENSG00000242445.1	ENST00000486538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	48	2	2.51602	2.873435	3.2308500000000002	0.00264912	2.81517e-4	0.024013	0.00415519
chr3	127622151	127622246	3723620	0	+	0.515789	(0.49,0.53]	chr3	318305	5	UTR3	UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000265056.12	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.51671	2.873385	3.23006	0.00768763	0.00253719	0.050396	0.0233955
chr8	74603243	74603334	9894967	0	-	0.516484	(0.49,0.53]	chr8	748013	1	EXON_PSEUDO	EXON_PSEUDO	PCBP2P2	ENSG00000253341.1	ENST00000517662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	157	2	2.12718	2.8733500000000003	3.61952	9.57022e-4	8.30886e-9	0.0114969	6.61225e-7
chr16	70277059	70277154	15997143	0	-	0.526316	(0.49,0.53]	chr16	1284682	2	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	74	2	2.62694	2.873305	3.11967	6.60942e-4	1.16146e-5	0.00866622	3.1065e-4
chr17	67107340	67107426	16651006	0	-	0.5	(0.49,0.53]	chr17	1369343	3	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	49	2	2.56183	2.87319	3.18455	0.0261296	2.02852e-5	0.118976	4.93215e-4
chr1	193085396	193085495	631172	0	+	0.333333	(0.33,0.36]	chr1	64149	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	2.01701	2.872955	3.7289	0.00697043	1.33223e-5	0.0474694	3.48915e-4
chr1	25343016	25343073	104111	0	+	0.421053	(0.42,0.455]	chr1	12206	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1:ENST00000487234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	2.50714	2.8727650000000002	3.23839	0.00122903	2.92986e-4	0.0130835	0.00464297
chr17	41528067	41528147	16542302	0	-	0.7375	(0.59,1]	chr17	1355990	4	CDS	CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000455635.1	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.74555	2.87276	3.99997	0.0444308	1.30803e-4	0.165174	0.00243846
chr17	63830871	63830935	16319011	0	+	0.453125	(0.42,0.455]	chr17	1323946	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMC5	ENSG00000087191.13	ENST00000579708.5:ENST00000310144.11:ENST00000581842.5:ENST00000582130.5:ENST00000584320.5:ENST00000579147.5:ENST00000580864.5:ENST00000585123.5:ENST00000581764.1:ENST00000584536.5:ENST00000585242.5:ENST00000578570.5:ENST00000375812.8:ENST00000581882.5:ENST00000579031.5:ENST00000584880.5:ENST00000580063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.55474	2.87276	3.19078	0.00310864	0.00228741	0.0274272	0.0210026
chr12	6534516	6534588	12713575	0	+	0.597222	(0.59,1]	chr12	986634	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GAPDH	ENSG00000111640.15	ENST00000496049.1:ENST00000229239.10:ENST00000396856.5:ENST00000492719.5:ENST00000396861.5:ENST00000474249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	62	948	2	2.68289	2.87262	3.06235	1.19589e-5	2.04002e-7	3.513e-4	1.03479e-5
chr9	37089740	37089839	10252827	0	+	0.454545	(0.42,0.455]	chr9	771576	49	EXON_LNCRNA	EXON_LNCRNA	EBLN3P	ENSG00000281649.2	ENST00000660341.1:ENST00000625445.1:ENST00000664382.1:ENST00000658888.1:ENST00000654889.1	lncRNA	lncRNA	lncRNA	lncRNA	3	26	2	2.19674	2.87256	3.54838	0.0254904	5.9986e-4	0.117089	0.0075062
chr1	29117698	29117796	121626	0	+	0.397959	(0.39,0.42]	chr1	14751	10	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	72	2	2.63566	2.872455	3.10925	8.67573e-5	4.03163e-5	0.00161602	9.6174e-4
chr1	93154826	93154888	1171213	0	-	0.435484	(0.42,0.455]	chr1	115375	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000483033.1:ENST00000479918.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	29	2	2.57051	2.87242	3.17433	0.0265466	3.82052e-4	0.120071	0.0052929
chr2	231078658	231078747	2423253	0	+	0.426966	(0.42,0.455]	chr2	218318	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000678837.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.57051	2.87224	3.17397	0.0265466	0.0031821	0.120071	0.0267094
chr3	48747084	48747184	4170005	0	-	0.44	(0.42,0.455]	chr3	350020	6	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR2A	ENSG00000114302.16	ENST00000457914.5:ENST00000265563.13	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.57051	2.87224	3.17397	0.0265466	0.0031821	0.120071	0.0267094
chr3	64013438	64013522	4241339	0	-	0.440476	(0.42,0.455]	chr3	356547	1	CDS	CDS:EXON_MRNA:INTRON	PSMD6	ENSG00000163636.11	ENST00000394431.6:ENST00000295901.9:ENST00000480205.5:ENST00000467853.5:ENST00000492933.5:ENST00000476464.5:ENST00000482510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.57051	2.87224	3.17397	0.0265466	0.0031821	0.120071	0.0267094
chr2	61873196	61873293	2691379	0	-	0.309278	(0.29,0.33]	chr2	240549	1	CDS	CDS:EXON_MRNA:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	97	2	2.60688	2.872125	3.13737	6.9259e-4	2.22816e-7	0.00876781	1.11132e-5
chr6	31816239	31816335	7116665	0	+	0.697917	(0.59,1]	chr6	546204	5	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	9	133	2	2.4206	2.872015	3.32343	8.82568e-4	5.92654e-5	0.0107596	0.00118941
chr1	202333502	202333555	1450354	0	-	0.415094	(0.39,0.42]	chr1	145692	2	CDS	CDS:UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.70591	2.871925	3.03794	0.0185716	1.79125e-4	0.0932453	0.00289872
chrY	10200154	10200230	19310728	0	+	0.460526	(0.455,0.49]	chrY	1641260	1	EXON_SMALL	EXON_SMALL	RNA5-8SP6	ENSG00000251705.1	ENST00000515896.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	64	468	2	2.05719	2.8719200000000003	3.68665	5.65633e-5	2.54904e-11	0.0012558	4.00953e-9
chr1	35603167	35603266	938335	0	-	0.40404	(0.39,0.42]	chr1	98692	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	77	2	2.66349	2.8719099999999997	3.08033	2.98559e-4	6.65124e-6	0.00471823	1.97036e-4
chr3	185630429	185630526	3956296	0	+	0.474227	(0.455,0.49]	chr3	333423	7	UTR3	UTR3:EXON_MRNA	SENP2	ENSG00000163904.13	ENST00000296257.10	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.72305	2.871725	4.0204	0.0324537	0.00736097	0.134899	0.0490627
chr19	40759430	40759520	17330887	0	+	0.544444	(0.53,0.59]	chr19	1436146	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1:ENST00000598452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	2.30988	2.87165	3.43342	0.00643853	8.93729e-5	0.0452349	0.00165837
chr4	82356536	82356609	5493491	0	-	0.39726	(0.39,0.42]	chr4	439970	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000508119.5:ENST00000513584.1:ENST00000509263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	31	2	1.59402	2.8714399999999998	4.14886	0.0167404	0.00415881	0.088513	0.0325842
chr5	95783879	95783963	6108391	0	+	0.47619	(0.455,0.49]	chr5	478257	2	CDS	CDS:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1:ENST00000511558.1:ENST00000503737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	1.37968	2.8713749999999996	4.36307	0.0536837	0.00218641	0.185819	0.0208941
chr7	128770643	128770742	8521863	0	+	0.414141	(0.39,0.42]	chr7	650198	16	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	47	314	2	2.78979	2.871245	2.9527	1.11182e-6	3.23377e-8	4.82603e-5	2.12949e-6
chrX	154360288	154360387	19278095	0	-	0.59596	(0.59,1]	chrX	1638314	4	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	82	2	2.77109	2.8712400000000002	2.97139	0.00331425	3.85356e-4	0.0285314	0.00531819
chr1	226377107	226377205	1533186	0	-	0.418367	(0.39,0.42]	chr1	153458	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.66154	2.8708099999999996	4.08008	0.0452475	1.01757e-6	0.174743	4.04731e-5
chr20	58909349	58909423	17841234	0	+	0.513514	(0.49,0.53]	chr20	1508830	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5:ENST00000683632.1:ENST00000684644.1:ENST00000684761.1:ENST00000682590.1:ENST00000684466.1:ENST00000682092.1:ENST00000682986.1:ENST00000475610.2:ENST00000682411.1:ENST00000683932.1:ENST00000682917.1:ENST00000682680.1:ENST00000476196.5:ENST00000494081.5:ENST00000487981.5:ENST00000493958.5:ENST00000656419.1:ENST00000479025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.13501	2.87077	3.60653	0.0287874	4.50981e-4	0.128869	0.00605268
chr12	54231675	54231775	13342843	0	-	0.42	(0.39,0.42]	chr12	1049602	3	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	9	60	2	2.68267	2.870705	3.05874	0.00125229	8.80979e-6	0.0133064	2.72329e-4
chr9	36190922	36190989	10249748	0	+	0.686567	(0.59,1]	chr9	771339	2	UTR5	UTR5:EXON_MRNA	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000466396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	80	2	2.65415	2.87061	3.08707	0.00171847	8.79989e-4	0.0168227	0.0107294
chrX	16845882	16845938	18971693	0	-	0.392857	(0.39,0.42]	chrX	1615435	2	CDS	CDS:EXON_MRNA	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5:ENST00000481586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	32	2	2.18025	2.87061	3.56097	0.00587938	6.12149e-4	0.0424857	0.00818575
chr1	110899740	110899831	405641	0	+	0.351648	(0.33,0.36]	chr1	39842	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD53	ENSG00000143119.14	ENST00000648608.1:ENST00000271324.6:ENST00000497404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	59	2	2.86825	2.8705249999999998	2.8728	2.65216e-4	3.16831e-5	0.004287	7.04278e-4
chr11	34099465	34099563	11905489	0	+	0.357143	(0.33,0.36]	chr11	909587	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000529307.1:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	122	2	2.8334	2.870515	2.90763	7.00631e-6	1.22795e-6	2.25977e-4	4.75957e-5
chr3	195781469	195781568	4661081	0	-	0.606061	(0.59,1]	chr3	385270	28	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	73	2	2.56487	2.870515	3.17616	0.00434232	0.00117129	0.0339139	0.0127267
chr5	17354159	17354252	6473545	0	-	0.473118	(0.455,0.49]	chr5	503559	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	FTH1P10	ENSG00000223361.5	ENST00000401830.3:ENST00000430907.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	32	2	2.30139	2.8705	3.43961	0.0530131	8.42878e-5	0.195536	0.0015859
chr15	42532390	42532485	14892408	0	+	0.315789	(0.29,0.33]	chr15	1170513	10	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.62211	2.870265	3.11842	0.00310562	1.21194e-4	0.0274272	0.00210755
chr9	37184612	37184712	10253488	0	+	0.32	(0.29,0.33]	chr9	771606	245	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	39	2	2.50855	2.8702199999999998	3.23189	0.0023535	5.87177e-5	0.0222204	0.00117909
chr4	24532958	24533054	5358752	0	-	0.447917	(0.42,0.455]	chr4	429826	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000508032.5:ENST00000512903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	44	2	1.71256	2.87014	4.02772	0.012801	4.30844e-5	0.0725185	0.00100091
chr11	7987628	7987716	11789414	0	+	0.590909	(0.59,1]	chr11	902500	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	40	2	2.32455	2.869955	3.41536	0.0520547	0.00164655	0.193787	0.0163443
chr2	61478065	61478159	2690337	0	-	0.361702	(0.36,0.39]	chr2	240316	5	UTR3	UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	100	2	2.02049	2.8699250000000003	3.71936	9.03865e-4	8.27113e-8	0.0109731	4.7516e-6
chr2	74211740	74211803	1891709	0	+	0.428571	(0.42,0.455]	chr2	179193	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.03532	2.8699149999999998	3.70451	0.040947	2.72131e-4	0.163285	0.00404713
chr10	43386831	43386926	11461761	0	-	0.494737	(0.49,0.53]	chr10	873955	2	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	2.78658	2.869745	2.95291	0.00119735	1.13193e-4	0.0134293	0.0020093
chr10	124402990	124403055	11729309	0	-	0.446154	(0.42,0.455]	chr10	895060	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000471127.1:ENST00000467675.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	2.51988	2.86973	3.21958	0.00300574	5.79033e-5	0.0267032	0.00116556
chr16	3192035	3192134	15497139	0	+	0.575758	(0.53,0.59]	chr16	1228505	3	INTRON	INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	311	3184	2	1.78132	2.869585	3.95785	1.60729e-4	1e-12	0.00287161	2.25522e-10
chr2	96298283	96298351	2790526	0	-	0.5	(0.49,0.53]	chr2	248827	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.72252	2.869345	3.01617	0.0161474	8.62231e-4	0.0860154	0.0100487
chr19	1032395	1032458	17190782	0	+	0.587302	(0.53,0.59]	chr19	1411384	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	CNN2	ENSG00000064666.15	ENST00000562015.5:ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6:ENST00000566695.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	25	2	2.35511	2.86929	3.38347	0.0445399	0.00132446	0.172163	0.0138834
chr19	11343051	11343120	17462754	0	-	0.623188	(0.59,1]	chr19	1461654	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RAB3D:TMEM205	ENSG00000105514.8:ENSG00000105518.14	ENST00000589655.1:ENST00000447337.5:ENST00000593256.6:ENST00000586218.5:ENST00000586956.5:ENST00000354882.10:ENST00000586590.5:ENST00000585722.1:ENST00000587948.5:ENST00000589555.5:ENST00000588560.5:ENST00000588321.1:ENST00000586701.1:ENST00000592952.5:ENST00000590482.5:ENST00000591677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	38	2	2.61074	2.86922	3.1277	0.025486	0.00490589	0.117089	0.0366648
chr6	32163223	32163314	7118532	0	+	0.527473	(0.49,0.53]	chr6	546945	4	UTR3	UTR3:EXON_MRNA:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.38683	2.86908	3.35133	0.012654	0.00150139	0.0718207	0.0152367
chr12	4099026	4099124	12704121	0	+	0.438776	(0.42,0.455]	chr12	985492	17	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	14	2	2.03532	2.8690249999999997	3.70273	0.040947	0.0215502	0.163285	0.102904
chr2	86116529	86116598	1926471	0	+	0.42029	(0.42,0.455]	chr2	181418	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTCD3	ENSG00000132300.19	ENST00000465560.5:ENST00000409326.6:ENST00000409783.6:ENST00000418628.5:ENST00000254630.12:ENST00000483925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.03532	2.8690249999999997	3.70273	0.040947	0.0215502	0.163285	0.102904
chr20	328449	328548	17644079	0	+	0.424242	(0.42,0.455]	chr20	1491292	17	UTR3	UTR3:EXON_MRNA	SOX12	ENSG00000177732.9	ENST00000342665.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.03532	2.8690249999999997	3.70273	0.040947	0.0215502	0.163285	0.102904
chr20	49634429	49634528	18003169	0	-	0.454545	(0.42,0.455]	chr20	1525863	16	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.03532	2.8690249999999997	3.70273	0.040947	0.0215502	0.163285	0.102904
chr5	140496993	140497088	6254784	0	+	0.442105	(0.42,0.455]	chr5	487556	6	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000532219.5:ENST00000246149.10:ENST00000412116.5:ENST00000462121.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.03532	2.8690249999999997	3.70273	0.040947	0.0215502	0.163285	0.102904
chr18	35710654	35710752	16824747	0	+	0.377551	(0.36,0.39]	chr18	1387498	10	UTR3	UTR3:EXON_MRNA	GALNT1	ENSG00000141429.14	ENST00000269195.6	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	1.81362	2.868925	3.92423	0.016627	4.00467e-6	0.0880236	1.41152e-4
chr9	131178310	131178410	10496161	0	+	0.44	(0.42,0.455]	chr9	793314	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	104	2	2.6994	2.868845	3.03829	2.18223e-5	9.46623e-6	5.2054e-4	2.90173e-4
chr7	66950951	66951043	8307662	0	+	0.521739	(0.49,0.53]	chr7	633385	1	CDS	CDS:EXON_MRNA:INTRON	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000433271.6:ENST00000484751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	1.73918	2.868755	3.99833	0.0213952	1.95792e-6	0.102813	7.01677e-5
chr10	43387117	43387212	11461764	0	-	0.621053	(0.59,1]	chr10	873955	5	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	2.85973	2.86843	2.87713	7.1836e-4	2.46211e-4	0.00903729	0.00372114
chr12	56131748	56131804	12898276	0	+	0.517857	(0.49,0.53]	chr12	1004226	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000550179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.21702	2.868415	3.51981	0.00959574	6.88328e-4	0.0603269	0.00876781
chr12	53414383	53414481	12886212	0	+	0.418367	(0.39,0.42]	chr12	1002329	33	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.62131	2.8684	3.11549	0.00609677	0.00403491	0.0439136	0.032143
chr11	33722378	33722445	12344344	0	-	0.58209	(0.53,0.59]	chr11	954026	1	CDS_START	CDS_START:CDS:EXON_MRNA	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1:ENST00000528700.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	42	2	2.2732	2.868345	3.46349	0.00369236	9.2216e-4	0.030936	0.0104432
chr2	128172572	128172667	2060321	0	+	0.368421	(0.36,0.39]	chr2	193324	1	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	49	2	1.99123	2.868235	3.74524	0.00488173	1.17259e-5	0.0376092	3.12994e-4
chr11	62625022	62625121	12409685	0	-	0.434343	(0.42,0.455]	chr11	961223	3	UTR3	UTR3:EXON_MRNA	GANAB	ENSG00000089597.18	ENST00000346178.8:ENST00000532402.5:ENST00000356638.8:ENST00000540933.5:ENST00000648273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	2.70611	2.868105	3.0301	0.00397496	1.85605e-4	0.0322851	0.00297242
chr1	19197997	19198049	876963	0	-	0.442308	(0.42,0.455]	chr1	90394	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr11	47473087	47473159	12386842	0	-	0.444444	(0.42,0.455]	chr11	956942	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000539455.5:ENST00000531165.5:ENST00000532048.5:ENST00000539254.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr16	20816115	20816212	15583134	0	+	0.453608	(0.42,0.455]	chr16	1234850	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	REXO5	ENSG00000005189.20	ENST00000568894.5:ENST00000566993.5:ENST00000348433.10:ENST00000261377.11:ENST00000568501.5:ENST00000566276.5:ENST00000568476.5:ENST00000565340.5:ENST00000568647.5:ENST00000566518.5:ENST00000564274.5:ENST00000567297.5:ENST00000563617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr20	32849319	32849418	17755866	0	+	0.444444	(0.42,0.455]	chr20	1498956	7	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr4	138180715	138180790	5665163	0	-	0.453333	(0.42,0.455]	chr4	450199	2	CDS	CDS:UTR3:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr5	160422824	160422893	6338665	0	+	0.434783	(0.42,0.455]	chr5	493672	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTTG1	ENSG00000164611.13	ENST00000352433.10:ENST00000524244.5:ENST00000517480.1:ENST00000523659.5:ENST00000520452.5:ENST00000393964.1:ENST00000519287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr9	128533855	128533951	10479759	0	+	0.4375	(0.42,0.455]	chr9	790280	2	CDS	CDS:UTR3:EXON_MRNA	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000309971.9:ENST00000684139.1:ENST00000372770.4:ENST00000683288.1:ENST00000684210.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.36247	2.86788	3.37329	0.0462889	0.00136107	0.176878	0.0141115
chr5	43294108	43294162	6560203	0	-	0.425926	(0.42,0.455]	chr5	508349	2	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000508319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	2.75179	2.86768	2.98357	8.66526e-4	3.24557e-5	0.0100799	7.95671e-4
chr12	24817607	24817707	13255732	0	-	0.26	[0,0.29]	chr12	1038842	77	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000543099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	62	2	2.4004	2.8676	3.3348	6.25965e-4	2.32934e-6	0.00830879	8.19053e-5
chr5	96803571	96803656	6721396	0	-	0.552941	(0.53,0.59]	chr5	517485	3	CDS	CDS:UTR5:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000503921.5:ENST00000508227.5:ENST00000507154.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.26097	2.8675800000000002	3.47419	0.00389622	8.75273e-4	0.0313006	0.0106963
chr1	70228421	70228464	280656	0	+	0.465116	(0.455,0.49]	chr1	30156	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SRSF11	ENSG00000116754.13	ENST00000370951.5:ENST00000463877.1:ENST00000370950.7:ENST00000475204.5:ENST00000395136.6:ENST00000473950.5:ENST00000469170.5:ENST00000486667.5:ENST00000481648.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	49	2	2.35761	2.8675100000000002	3.37741	0.00138275	1.27402e-4	0.0143168	0.00241206
chr2	216206119	216206211	2380727	0	+	0.445652	(0.42,0.455]	chr2	213872	11	UTR3	UTR3:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.32442	2.8674150000000003	3.41041	0.00182252	1.00299e-4	0.0183913	0.00180803
chr17	28879711	28879805	16488315	0	-	0.521277	(0.49,0.53]	chr17	1348326	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	34	2	1.78308	2.86734	3.9516	0.0425234	6.96459e-5	0.167547	0.0013446
chr9	131258173	131258271	10870338	0	-	0.530612	(0.53,0.59]	chr9	824566	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.27113	2.86731	3.46349	0.0178853	9.2216e-4	0.0918323	0.0104432
chr12	57718329	57718421	12904320	0	+	0.597826	(0.59,1]	chr12	1005896	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	96	2	2.78953	2.866935	2.94434	9.28839e-4	4.79444e-4	0.0105151	0.00677016
chr11	9446758	9446856	11792904	0	+	0.316327	(0.29,0.33]	chr11	902941	17	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.83055	2.86689	3.90323	0.0348758	9.15815e-5	0.144642	0.00168607
chr1	229549300	229549367	1542858	0	-	0.552239	(0.53,0.59]	chr1	154580	2	CDS	CDS:EXON_MRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.71318	2.86686	3.02054	0.00577011	0.00340745	0.0426551	0.0283456
chr22	21622457	21622555	18303186	0	+	0.55102	(0.53,0.59]	chr22	1554195	9	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	2.71318	2.86686	3.02054	0.00577011	0.00340745	0.0426551	0.0283456
chr3	47419327	47419421	4160730	0	-	0.553191	(0.53,0.59]	chr3	348122	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	2.71318	2.86686	3.02054	0.00577011	0.00340745	0.0426551	0.0283456
chr9	124412351	124412421	10850107	0	-	0.542857	(0.53,0.59]	chr9	821907	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1:ENST00000466951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.71318	2.86686	3.02054	0.00577011	0.00340745	0.0426551	0.0283456
chr16	2818773	2818871	15495142	0	+	0.479592	(0.455,0.49]	chr16	1227870	2	CDS	CDS:UTR3:EXON_MRNA	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000570629.5:ENST00000570594.5:ENST00000574813.5:ENST00000577043.1:ENST00000575199.1:ENST00000574265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	87	2	2.41799	2.866815	3.31564	1.56752e-4	8.02869e-6	0.00260196	2.50969e-4
chr1	27307166	27307264	112879	0	+	0.622449	(0.59,1]	chr1	13624	9	UTR3	UTR3:EXON_MRNA	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7:ENST00000447062.2:ENST00000491239.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	39	2	2.42639	2.8667350000000003	3.30708	0.0409084	0.00252451	0.163285	0.0226777
chr20	25857846	25857946	17936141	0	-	0.48	(0.455,0.49]	chr20	1518548	39	INTRON	INTRON	FAM182B	ENSG00000175170.16	ENST00000478164.1:ENST00000453481.4:ENST00000658073.1:ENST00000376403.5:ENST00000662978.1:ENST00000657325.1:ENST00000485279.2:ENST00000584071.1:ENST00000582267.5:ENST00000584356.1:ENST00000661999.1	lncRNA	lncRNA	lncRNA	lncRNA	4	31	2	2.76399	2.86662	2.96925	0.00698725	8.75629e-4	0.0473262	0.0106963
chr12	48692335	48692435	13321370	0	-	0.32	(0.29,0.33]	chr12	1044934	40	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.39609	2.8665849999999997	3.33708	0.0040115	2.90171e-5	0.0324137	6.60417e-4
chr19	41306753	41306847	17334335	0	+	0.457447	(0.455,0.49]	chr19	1436801	3	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	83	2	1.76414	2.866565	3.96899	0.00547031	2.27279e-7	0.0413162	1.1289e-5
chr6	30725062	30725157	7112229	0	+	0.536842	(0.53,0.59]	chr6	545067	8	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	394	2	2.26352	2.866525	3.46953	4.32356e-5	1.22554e-9	0.0010042	1.25866e-7
chr3	119436790	119436884	4399122	0	-	0.478723	(0.455,0.49]	chr3	364722	1	CDS	CDS:UTR3:EXON_MRNA	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000473684.5:ENST00000468545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	2.40664	2.866505	3.32637	0.0123662	1.64563e-4	0.0705839	0.00269001
chr10	70423340	70423439	11100464	0	+	0.494949	(0.49,0.53]	chr10	844350	17	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	2.4971	2.8662900000000002	3.23548	6.41492e-4	2.76544e-4	0.00796686	0.00444204
chr1	154241512	154241565	479839	0	+	0.509434	(0.49,0.53]	chr1	49637	1	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.38097	2.86615	3.35133	0.0425419	0.00150139	0.167547	0.0152367
chr4	88206489	88206552	5522372	0	-	0.492063	(0.49,0.53]	chr4	442239	2	EXON_SMALL	EXON_SMALL:INTRON	ABCG2:RNU6ATAC31P	ENSG00000118777.12:ENSG00000221440.1	ENST00000650821.1:ENST00000515655.5:ENST00000408513.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	3	27	2	2.30264	2.86609	3.42954	0.0165402	0.00105489	0.087611	0.0123035
chr11	75006590	75006688	12021771	0	+	0.418367	(0.39,0.42]	chr11	926843	2	UTR3	UTR3:EXON_MRNA:INTRON	NEU3	ENSG00000162139.10	ENST00000531509.5:ENST00000529024.1:ENST00000294064.9:ENST00000532963.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	1.99911	2.866025	3.73294	0.0477207	0.0190864	0.17993	0.0958835
chr6	26021678	26021778	7100987	0	+	0.62	(0.59,1]	chr6	542746	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C1	ENSG00000278637.2	ENST00000617569.2	protein_coding	protein_coding	protein_coding	protein_coding	9	136	2	2.10281	2.865995	3.62918	0.00363317	1.16529e-5	0.0298137	3.432e-4
chr12	123597801	123597899	13127199	0	+	0.316327	(0.29,0.33]	chr12	1025792	12	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.99403	2.8658200000000003	3.73761	0.0202925	2.33029e-4	0.098158	0.00355688
chr12	98534838	98534938	13036726	0	+	0.36	(0.33,0.36]	chr12	1014956	6	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	135	2	2.33918	2.865775	3.39237	9.70087e-5	3.23308e-8	0.00192518	2.12944e-6
chrX	19359553	19359653	18604956	0	+	0.49	(0.455,0.49]	chrX	1589060	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000379804.1:ENST00000478795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	81	2	2.09777	2.865755	3.63374	0.0022782	6.69408e-7	0.0216337	2.84186e-5
chr10	21734038	21734129	10961833	0	+	0.516484	(0.49,0.53]	chr10	834188	4	CDS	CDS:UTR3:EXON_MRNA	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.30189	2.865715	3.42954	0.00685554	0.00105489	0.0471063	0.0123035
chr11	125656762	125656858	12194930	0	+	0.375	(0.36,0.39]	chr11	940883	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000428830.6:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	31	2	2.39898	2.8656949999999997	3.33241	0.00221341	0.00193631	0.0204985	0.0192272
chr10	73007307	73007398	11568230	0	-	0.307692	(0.29,0.33]	chr10	880432	2	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	8	34	2	1.97129	2.86569	3.76009	0.004502	3.08518e-4	0.0344286	0.00476847
chr1	15719826	15719920	70263	0	+	0.56383	(0.53,0.59]	chr1	7839	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLEKHM2	ENSG00000116786.13	ENST00000375799.8:ENST00000375793.2:ENST00000462455.1:ENST00000642363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	1.72707	2.8655000000000004	4.00393	0.015378	0.0108084	0.0833184	0.064368
chr1	154261036	154261109	480055	0	+	0.630137	(0.59,1]	chr1	49713	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000475373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	60	2	2.33806	2.8654900000000003	3.39292	0.00632881	0.00192565	0.0448545	0.0191769
chr1	167788220	167788320	524585	0	+	0.37	(0.36,0.39]	chr1	56285	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000403379.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.63115	2.865175	3.0992	0.0245975	5.86576e-4	0.114841	0.00742331
chr6	69790322	69790397	7788926	0	-	0.346667	(0.33,0.36]	chr6	596423	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	LMBRD1	ENSG00000168216.13	ENST00000649934.3:ENST00000647655.1:ENST00000649679.1:ENST00000649673.1:ENST00000649057.1:ENST00000370570.6:ENST00000648168.1:ENST00000647934.1:ENST00000649918.1:ENST00000649744.1:ENST00000650124.1:ENST00000648303.1:ENST00000649011.1:ENST00000472827.2:ENST00000648635.1:ENST00000647650.1:ENST00000649028.1:ENST00000649958.1:ENST00000649166.1:ENST00000650107.1:ENST00000647964.1:ENST00000648394.1:ENST00000648743.1:ENST00000650035.1:ENST00000649054.1:ENST00000650043.1:ENST00000649795.1:ENST00000647669.1:ENST00000648330.1:ENST00000649373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	2.47163	2.864915	3.2582	0.0129725	0.00230915	0.0724783	0.0211205
chr1	207331201	207331296	686363	0	+	0.421053	(0.42,0.455]	chr1	69496	2	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	92	2	1.87159	2.86488	3.85817	0.0214479	2.60862e-8	0.102998	1.77028e-6
chr7	27526020	27526116	8739200	0	-	0.322917	(0.29,0.33]	chr7	667102	7	UTR3	UTR3:EXON_MRNA	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	2.62211	2.86486	3.10761	0.00310562	6.03128e-4	0.0274272	0.00754033
chr19	804291	804373	17189501	0	+	0.609756	(0.59,1]	chr19	1411023	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	83	2	1.7297	2.864835	3.99997	0.016326	1.30803e-4	0.0867237	0.00243846
chr5	14796629	14796728	6463507	0	-	0.383838	(0.36,0.39]	chr5	503013	86	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	2.48922	2.864735	3.24025	0.0110399	2.74161e-4	0.0652374	0.00406677
chr20	57358705	57358791	18021338	0	-	0.395349	(0.39,0.42]	chr20	1527343	4	UTR3	UTR3:EXON_MRNA	MTRNR2L3	ENSG00000256222.3	ENST00000543500.3	protein_coding	protein_coding	protein_coding	protein_coding	20	177	2	1.6661	2.864465	4.06283	0.00808574	7.52245e-11	0.0531918	1.05824e-8
chr1	11080620	11080691	859293	0	-	0.380282	(0.36,0.39]	chr1	86847	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000472078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.1437	2.86423	3.58476	0.0340515	5.01956e-4	0.141465	0.00653592
chrX	77902649	77902662	18744894	0	+	0.384615	(0.36,0.39]	chrX	1599632	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000475465.1:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.1437	2.86423	3.58476	0.0340515	5.01956e-4	0.141465	0.00653592
chr10	79311584	79311684	11148561	0	+	0.56	(0.53,0.59]	chr10	847403	4	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr11	34146371	34146460	11905971	0	+	0.539326	(0.53,0.59]	chr11	909748	3	UTR3	UTR3:EXON_MRNA	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr12	54280007	54280064	13343337	0	-	0.561404	(0.53,0.59]	chr12	1049642	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000618078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr16	21836762	21836859	15889963	0	-	0.556701	(0.53,0.59]	chr16	1271456	21	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr16	74636345	74636422	16032738	0	-	0.532468	(0.53,0.59]	chr16	1287440	1	CDS	CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5	protein_coding	protein_coding	protein_coding	protein_coding	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr2	200811901	200811990	2309261	0	+	0.573034	(0.53,0.59]	chr2	208900	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BZW1	ENSG00000082153.18	ENST00000450637.5:ENST00000410110.6:ENST00000452206.5:ENST00000409600.6:ENST00000464483.1:ENST00000460660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr20	30284772	30284870	17937968	0	-	0.581633	(0.53,0.59]	chr20	1518807	23	INTRON	INTRON	LINC01597	ENSG00000205611.5	ENST00000380888.5	lncRNA	lncRNA	lncRNA	lncRNA	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr3	45011239	45011339	3446303	0	+	0.54	(0.53,0.59]	chr3	300158	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EXOSC7:CLEC3B	ENSG00000075914.13:ENSG00000163815.6	ENST00000461361.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1:ENST00000490386.1:ENST00000486727.1:ENST00000459856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr6	27864231	27864316	7649627	0	-	0.541176	(0.53,0.59]	chr6	582819	3	EXON_PSEUDO	EXON_PSEUDO	H2BC16P	ENSG00000217646.1	ENST00000402707.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr6	33272313	33272404	7121511	0	+	0.571429	(0.53,0.59]	chr6	547496	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr7	66941865	66941965	8307569	0	+	0.55	(0.53,0.59]	chr7	633366	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMEM248	ENSG00000106609.16	ENST00000341567.8:ENST00000607045.5:ENST00000433271.6:ENST00000413593.5:ENST00000424964.6:ENST00000418375.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr9	128254173	128254268	10477617	0	+	0.578947	(0.53,0.59]	chr9	789796	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000627061.2:ENST00000634267.2:ENST00000630850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	13	2	2.35511	2.864205	3.3733	0.0529193	0.0445399	0.18423900000000001	0.172163
chr17	47663088	47663178	16251764	0	+	0.4	(0.39,0.42]	chr17	1316674	1	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	54	2	2.26834	2.864085	3.45983	8.525e-4	8.68166e-5	0.00994988	0.00177086
chr3	37981345	37981441	3417998	0	+	0.489583	(0.455,0.49]	chr3	296820	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000447745.5:ENST00000436654.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.52734	2.864015	3.20069	0.00792433	0.00285821	0.0523592	0.0245841
chr2	136199113	136199212	2899169	0	-	0.40404	(0.39,0.42]	chr2	258697	1	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP2	ENSG00000227347.1	ENST00000447355.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	57	2	1.87119	2.8639799999999997	3.85677	0.0373134	5.6465e-7	0.152293	2.45601e-5
chr1	112689492	112689571	411663	0	+	0.556962	(0.53,0.59]	chr1	40577	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOV10	ENSG00000155363.18	ENST00000413052.6:ENST00000369645.5:ENST00000369644.5:ENST00000496577.5:ENST00000468624.5:ENST00000357443.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	1.90953	2.86396	3.81839	0.0517711	0.0184435	0.193577	0.0945306
chr9	127691748	127691847	10475569	0	+	0.565657	(0.53,0.59]	chr9	789241	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	1.90953	2.86396	3.81839	0.0517711	0.0184435	0.193577	0.0945306
chr1	205715004	205715103	1462005	0	-	0.333333	(0.33,0.36]	chr1	147460	23	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	13	72	2	2.41598	2.8638	3.31162	3.62424e-4	2.66212e-6	0.00545349	9.15399e-5
chr5	314416	314515	5848843	0	+	0.484848	(0.455,0.49]	chr5	459658	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2546F11.1:PDCD6:PDCD6-AHRR	ENSG00000286001.1:ENSG00000249915.8:ENSG00000288622.1	ENST00000651543.1:ENST00000614778.4:ENST00000618970.4:ENST00000628729.2:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505113.6:ENST00000675395.1:ENST00000507473.1:ENST00000512529.6:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	58	2	2.43333	2.863415	3.2935	9.86428e-4	3.58585e-5	0.0117367	7.84153e-4
chr8	108241798	108241856	10002718	0	-	0.327586	(0.29,0.33]	chr8	754223	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	58	2	2.83716	2.8633949999999997	2.88963	1.69403e-4	2.91371e-5	0.00298622	6.62759e-4
chr6	31827737	31827808	7116683	0	+	0.647887	(0.59,1]	chr6	546207	1	UTR5	UTR5:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	4	60	2	2.21052	2.8632999999999997	3.51608	0.010462	0.00108676	0.063428	0.0118659
chr2	135961446	135961498	2898870	0	-	0.480769	(0.455,0.49]	chr2	258652	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000441323.5:ENST00000456565.5:ENST00000449218.5:ENST00000435076.1:ENST00000463008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	2.43664	2.863295	3.28995	0.00394058	3.81851e-5	0.0315828	9.15499e-4
chr4	1696276	1696351	5279978	0	-	0.44	(0.42,0.455]	chr4	424992	2	CDS	CDS:EXON_MRNA	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5:ENST00000480936.1	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.42938	2.86329	3.2972	0.0045028	1.93851e-4	0.0349711	0.00307904
chr17	58703196	58703262	16289683	0	+	0.318182	(0.29,0.33]	chr17	1321207	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RAD51C	ENSG00000108384.15	ENST00000583539.5:ENST00000461271.5:ENST00000487921.5:ENST00000337432.9:ENST00000475762.5:ENST00000487525.5:ENST00000482007.5:ENST00000584617.5:ENST00000425173.5:ENST00000413590.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.59395	2.863035	3.13212	0.0249836	0.00551048	0.114013	0.0414592
chr20	32443255	32443353	17941180	0	-	0.295918	(0.29,0.33]	chr20	1519268	3	UTR3	UTR3:EXON_MRNA	NOL4L	ENSG00000197183.14	ENST00000359676.9:ENST00000621426.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.59395	2.863035	3.13212	0.0249836	0.00551048	0.114013	0.0414592
chr6	34587684	34587783	7674077	0	-	0.454545	(0.42,0.455]	chr6	588118	5	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	9	69	2	2.61085	2.86299	3.11513	7.93561e-4	1.19503e-5	0.00988333	3.1819e-4
chr3	10115674	10115701	3302239	0	+	0.740741	(0.59,1]	chr3	290635	1	UTR5	UTR5:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.42324	2.86297	3.3027	0.0116918	2.94605e-4	0.0686664	0.00432147
chr14	51255597	51255695	14278865	0	+	0.244898	[0,0.29]	chr14	1116425	12	UTR3	UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.4397	2.862765	3.28583	0.0388194	0.00346525	0.149227	0.0293796
chr20	63890511	63890605	17866830	0	+	0.287234	[0,0.29]	chr20	1511295	6	UTR3	UTR3:EXON_MRNA	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4:ENST00000474176.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	2.4397	2.862765	3.28583	0.0388194	0.00346525	0.149227	0.0293796
chr3	155829759	155829831	4538129	0	-	0.444444	(0.42,0.455]	chr3	375996	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-674E16.5:SLC33A1	ENSG00000284952.1:ENSG00000169359.16	ENST00000643876.1:ENST00000643144.2:ENST00000359479.7:ENST00000468581.2:ENST00000646424.1:ENST00000644094.1:ENST00000642438.1:ENST00000644855.1:ENST00000475842.5:ENST00000496772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.81175	2.86274	2.91373	0.00892357	0.00227654	0.0567495	0.0209546
chr21	33524764	33524864	18220546	0	-	0.48	(0.455,0.49]	chr21	1546377	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000460305.1:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	54	2	1.94735	2.8626	3.77785	0.00680997	9.38535e-6	0.0465162	2.61344e-4
chr1	55132622	55132700	1031834	0	-	0.435897	(0.42,0.455]	chr1	107318	2	CDS	CDS:EXON_MRNA	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.81137	2.86255	2.91373	0.0120386	0.00892357	0.0700876	0.0567495
chr18	57602354	57602420	17137472	0	-	0.454545	(0.42,0.455]	chr18	1407143	1	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.81137	2.86255	2.91373	0.0120386	0.00892357	0.0700876	0.0567495
chr4	38697081	38697163	4796657	0	+	0.426829	(0.42,0.455]	chr4	395580	1	CDS	CDS:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.81137	2.86255	2.91373	0.0120386	0.00892357	0.0700876	0.0567495
chr1	19184095	19184175	876808	0	-	0.4	(0.39,0.42]	chr1	90344	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.96364	2.862525	3.76141	0.00890556	2.14058e-4	0.0565003	0.00359478
chr1	150576466	150576566	1288942	0	-	0.36	(0.33,0.36]	chr1	128249	24	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	29	2	2.15555	2.86252	3.56949	0.00575018	5.48184e-4	0.0426551	0.00697082
chr12	54400845	54400920	13343769	0	-	0.533333	(0.53,0.59]	chr12	1049765	1	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000552387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	54	2	2.37399	2.8625100000000003	3.35103	0.0126178	2.54119e-5	0.0717599	5.894e-4
chr16	81710289	81710387	15772092	0	+	0.387755	(0.36,0.39]	chr16	1255597	6	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.32678	2.862405	3.39803	0.0193538	0.00122711	0.0943643	0.0130695
chr18	57601551	57601651	17137463	0	-	0.37	(0.36,0.39]	chr18	1407137	10	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.32678	2.862405	3.39803	0.0193538	0.00122711	0.0943643	0.0130695
chr19	9651256	9651356	17455083	0	-	0.38	(0.36,0.39]	chr19	1459822	96	UTR3	UTR3:EXON_MRNA	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.32678	2.862405	3.39803	0.0193538	0.00122711	0.0943643	0.0130695
chr7	135615915	135615990	8552998	0	+	0.386667	(0.36,0.39]	chr7	652814	1	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.32678	2.862405	3.39803	0.0193538	0.00122711	0.0943643	0.0130695
chr7	155309345	155309444	8632667	0	+	0.414141	(0.39,0.42]	chr7	659289	11	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	18	112	2	2.48668	2.8623849999999997	3.23809	5.06346e-5	9.15888e-7	0.00103915	4.11407e-5
chr12	54396198	54396292	13343713	0	-	0.521277	(0.49,0.53]	chr12	1049741	11	UTR3	UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000547197.1:ENST00000549601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.11783	2.86218	3.60653	0.0142725	4.50981e-4	0.0780078	0.00605268
chr5	126818921	126818983	6202667	0	+	0.354839	(0.33,0.36]	chr5	483201	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.47163	2.862175	3.25272	0.0129725	2.63256e-4	0.0724783	0.00393206
chrX	19360144	19360243	18604962	0	+	0.313131	(0.29,0.33]	chrX	1589061	6	UTR3	UTR3:EXON_MRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.77585	2.862145	2.94844	0.0143131	0.00217122	0.0780602	0.0208941
chr1	39034391	39034396	145857	0	+	0.4	(0.39,0.42]	chr1	18092	1	CDS	CDS:EXON_MRNA	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.57493	2.861895	4.14886	0.0284977	0.00415881	0.125493	0.0325842
chr10	118872144	118872236	11715584	0	-	0.532609	(0.53,0.59]	chr10	893736	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-498J9.2:RPL17P36	ENSG00000229272.2:ENSG00000236058.3	ENST00000663084.1:ENST00000420302.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	24	2	2.515	2.86187	3.20874	0.0292633	0.00278422	0.129773	0.0241009
chr17	4945084	4945153	16094342	0	+	0.550725	(0.53,0.59]	chr17	1294898	2	UTR3	UTR3:EXON_MRNA	RNF167	ENSG00000108523.16	ENST00000571816.5:ENST00000572430.5:ENST00000262482.11:ENST00000575111.5:ENST00000576229.5:ENST00000572382.5:ENST00000576965.1	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.515	2.86187	3.20874	0.0292633	0.00278422	0.129773	0.0241009
chr22	20949710	20949745	18300179	0	+	0.4	(0.39,0.42]	chr22	1553645	1	CDS	CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.49701	2.861815	3.22662	0.0339607	0.00257296	0.141431	0.0229363
chr6	96552571	96552662	7281646	0	+	0.417582	(0.39,0.42]	chr6	561247	2	CDS	CDS:EXON_MRNA	UFL1	ENSG00000014123.10	ENST00000369278.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.49701	2.861815	3.22662	0.0339607	0.00257296	0.141431	0.0229363
chr9	73160262	73160319	10304684	0	+	0.473684	(0.455,0.49]	chr9	776024	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000415424.5:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	2.22282	2.86165	3.50048	0.00483628	5.99835e-5	0.0366328	0.00130886
chr7	121128433	121128486	8495137	0	+	0.377358	(0.36,0.39]	chr7	648372	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.6181	2.86158	3.10506	0.00176908	7.38785e-4	0.0172426	0.00924579
chr2	181062888	181062980	2242311	0	+	0.402174	(0.39,0.42]	chr2	204439	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UBE2E3	ENSG00000170035.16	ENST00000602959.5:ENST00000392415.6:ENST00000410062.9:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5:ENST00000602837.1:ENST00000602970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	30	2	2.85416	2.861555	2.86895	0.00225069	0.00177945	0.021386	0.0172974
chr4	24556330	24556410	5358999	0	-	0.4125	(0.39,0.42]	chr4	429870	2	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.85416	2.861555	2.86895	0.00225069	0.00177945	0.021386	0.0172974
chr8	17995313	17995412	9215103	0	+	0.393939	(0.39,0.42]	chr8	704144	13	INTRON	INTRON	PCM1	ENSG00000078674.18	ENST00000325083.12:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.85416	2.861555	2.86895	0.00225069	0.00177945	0.021386	0.0172974
chrX	65737257	65737338	18716335	0	+	0.580247	(0.53,0.59]	chrX	1596869	2	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	2.15403	2.86133	3.56863	0.0118065	3.93456e-5	0.0686664	8.48445e-4
chr16	29798373	29798437	15626673	0	+	0.53125	(0.53,0.59]	chr16	1239268	1	CDS	CDS:UTR3:EXON_MRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000569636.6:ENST00000160827.9:ENST00000570173.5:ENST00000400751.9:ENST00000569382.2:ENST00000563666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	1.89806	2.861065	3.82407	0.0532477	0.0179666	0.184818	0.0918323
chr22	20729631	20729711	18438741	0	-	0.5625	(0.53,0.59]	chr22	1571869	1	CDS	CDS:EXON_MRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000477245.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	1.89806	2.861065	3.82407	0.0532477	0.0179666	0.184818	0.0918323
chr6	31691629	31691680	7661769	0	-	0.568627	(0.53,0.59]	chr6	584998	2	CDS	CDS:UTR3:EXON_MRNA	ABHD16A:XXbac-BPG32J3.20	ENSG00000204427.12:ENSG00000204422.7	ENST00000395952.8:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000477016.5:ENST00000498420.5:ENST00000496579.5:ENST00000492899.1:ENST00000477462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	1.89806	2.861065	3.82407	0.0532477	0.0179666	0.184818	0.0918323
chr3	120596469	120596569	3693602	0	+	0.6	(0.59,1]	chr3	315839	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDUFB4	ENSG00000065518.8	ENST00000485064.1:ENST00000184266.3:ENST00000492739.1:ENST00000461682.1:ENST00000491335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.25537	2.8609850000000003	3.4666	0.00890868	0.00133574	0.0567495	0.0139317
chr2	38748101	38748157	2605181	0	-	0.446429	(0.42,0.455]	chr2	234683	2	CDS	CDS:UTR3:EXON_MRNA	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	47	2	2.0929	2.86073	3.62856	0.00170991	4.02604e-4	0.0176835	0.00549837
chr1	53050803	53050902	197914	0	+	0.434343	(0.42,0.455]	chr1	25186	2	UTR3	UTR3:EXON_MRNA	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000430330.6:ENST00000408941.7:ENST00000533119.1:ENST00000484100.5:ENST00000435345.6:ENST00000488965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	2.48259	2.86049	3.23839	0.0031851	2.92986e-4	0.0267166	0.00464297
chr5	54053195	54053295	6577594	0	-	0.31	(0.29,0.33]	chr5	509097	50	INTRON	INTRON	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.63813	2.8603699999999996	3.08261	0.00803229	0.0048227	0.0528968	0.0365653
chr9	129829472	129829541	10867798	0	-	0.463768	(0.455,0.49]	chr9	824302	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C9orf78	ENSG00000136819.15	ENST00000372447.7:ENST00000461349.5:ENST00000461762.5:ENST00000480023.1:ENST00000461539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.79605	2.86034	3.92463	0.0427708	0.0113417	0.168094	0.0665375
chr11	67612199	67612265	11997089	0	+	0.590909	(0.59,1]	chr11	923227	2	CDS	CDS:UTR3:EXON_MRNA	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000526770.5:ENST00000533919.5:ENST00000527355.5:ENST00000527923.1:ENST00000531250.1:ENST00000534352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.72625	2.860315	2.99438	0.00776449	0.00394493	0.050813	0.0322851
chr20	49090936	49091022	17811815	0	+	0.337209	(0.33,0.36]	chr20	1506576	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	2.47163	2.86031	3.24899	0.0129725	1.31723e-5	0.0724783	3.45454e-4
chr1	202945075	202945169	1453225	0	-	0.446809	(0.42,0.455]	chr1	146069	2	CDS	CDS:EXON_MRNA:INTRON	ADIPOR1	ENSG00000159346.13	ENST00000340990.10:ENST00000367254.7:ENST00000417068.5:ENST00000426229.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.7523	2.86009	2.96788	0.0153283	0.00109784	0.0828908	0.0119666
chr17	1678821	1678881	16401591	0	-	0.45	(0.42,0.455]	chr17	1334949	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000573716.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.7523	2.86009	2.96788	0.0153283	0.00109784	0.0828908	0.0119666
chr7	105112669	105112763	8449884	0	+	0.521277	(0.49,0.53]	chr7	645366	10	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	2.84493	2.860005	2.87508	5.26587e-4	4.55699e-4	0.00679103	0.00645757
chr2	86138058	86138158	1926711	0	+	0.32	(0.29,0.33]	chr2	181513	6	UTR3	UTR3:EXON_MRNA	PTCD3	ENSG00000132300.19	ENST00000254630.12	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.63796	2.859825	3.08169	0.00114594	6.9438e-4	0.0130468	0.00846751
chr11	760193	760253	11758755	0	+	0.45	(0.42,0.455]	chr11	898424	2	CDS	CDS:UTR3:EXON_MRNA	TALDO1	ENSG00000177156.11	ENST00000528070.5:ENST00000528097.5:ENST00000530440.1:ENST00000319006.8:ENST00000530119.5:ENST00000533796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	124	2	2.84743	2.859725	2.87202	2.0116e-4	1.36166e-6	0.0034174	5.18681e-5
chr12	104349810	104349909	13059152	0	+	0.585859	(0.53,0.59]	chr12	1017716	15	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	2.15051	2.85957	3.56863	0.00631495	3.93456e-5	0.0446309	8.48445e-4
chrX	134493507	134493590	18863907	0	+	0.421687	(0.42,0.455]	chrX	1607390	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	48	2	2.0371	2.8595300000000003	3.68196	0.00638814	1.87505e-5	0.0450608	5.08634e-4
chr4	99076378	99076465	5548267	0	-	0.402299	(0.39,0.42]	chr4	443159	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.62131	2.8593349999999997	3.09736	0.00609677	5.79886e-4	0.0439136	0.00734771
chr10	74119466	74119566	11117662	0	+	0.39	(0.36,0.39]	chr10	846311	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	56	2	2.1181	2.8592750000000002	3.60045	0.00385216	4.13757e-6	0.032128	1.32555e-4
chr15	90881679	90881778	15103379	0	+	0.585859	(0.53,0.59]	chr15	1188582	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	55	2	2.71181	2.8592750000000002	3.00674	8.9408e-4	3.99651e-4	0.01086	0.0054764
chr1	207046532	207046632	1465419	0	-	0.37	(0.36,0.39]	chr1	148274	28	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.02118	2.859145	3.69711	0.0251625	1.63058e-5	0.117055	4.12921e-4
chr3	14477273	14477342	3320749	0	+	0.57971	(0.53,0.59]	chr3	292263	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	77	2	2.14205	2.859145	3.57624	0.0123179	1.21279e-6	0.070688	5.18778e-5
chr2	96275011	96275111	2790249	0	-	0.45	(0.42,0.455]	chr2	248678	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.812	2.8590799999999996	2.90616	0.00162359	2.25472e-4	0.0169915	0.00346549
chrX	53380002	53380102	19076622	0	-	0.55	(0.53,0.59]	chrX	1622486	60	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.0271	2.8588750000000003	3.69065	0.00643061	3.04331e-4	0.0450905	0.00472028
chr2	27040837	27040932	1690679	0	+	0.526316	(0.49,0.53]	chr2	165370	1	UTR3	UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000434544.1:ENST00000460665.1:ENST00000469445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.59881	2.8588649999999998	3.11892	0.00398244	0.00184545	0.0322851	0.0178046
chr12	2803830	2803926	12696877	0	+	0.541667	(0.53,0.59]	chr12	984985	7	UTR3	UTR3:EXON_MRNA:INTRON	FKBP4	ENSG00000004478.8	ENST00000001008.6:ENST00000544366.1	protein_coding	protein_coding	protein_coding	protein_coding	5	48	2	2.38191	2.8588	3.33569	0.00477439	1.57373e-4	0.0368489	0.00260854
chr16	47450403	47450461	15932575	0	-	0.534483	(0.53,0.59]	chr16	1277817	2	EXON_SMALL	EXON_SMALL:CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ITFG1:5S_rRNA	ENSG00000129636.13:ENSG00000288601.1	ENST00000320640.11:ENST00000544001.6:ENST00000569551.6:ENST00000563350.1:ENST00000565940.6:ENST00000674448.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene:protein_coding	rRNA_pseudogene:protein_coding:retained_intron:processed_transcript	3	33	2	1.90953	2.8587949999999998	3.80806	0.0517711	1.65022e-4	0.193577	0.00269147
chrX	153947655	153947754	19275555	0	-	0.50505	(0.49,0.53]	chrX	1637875	2	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	10	75	2	1.94507	2.858695	3.77232	0.00462708	1.14615e-6	0.0358457	4.49174e-5
chr11	10797719	10797815	12272536	0	-	0.395833	(0.39,0.42]	chr11	948968	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000525606.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	36	2	2.48556	2.85865	3.23174	0.00384158	2.82122e-4	0.0320512	0.00415762
chr18	670779	670867	16717025	0	+	0.590909	(0.59,1]	chr18	1379297	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000323250.9:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	91	2	2.26146	2.85863	3.4558	0.00467034	1.35447e-4	0.0361714	0.00231202
chr1	150968990	150969090	1291410	0	-	0.53	(0.49,0.53]	chr1	128705	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	CERS2	ENSG00000143418.20	ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000368949.8:ENST00000361419.9:ENST00000558062.5:ENST00000421609.5:ENST00000457392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	2.78773	2.85845	2.92917	0.00257389	4.42985e-5	0.0235767	9.29789e-4
chr3	40310974	40311056	3429104	0	+	0.390244	(0.39,0.42]	chr3	298217	2	CDS	CDS:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1:ENST00000487151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	1.99911	2.85825	3.71739	0.0477207	1.41698e-5	0.17993	3.66245e-4
chr1	67425082	67425152	1079266	0	-	0.457143	(0.455,0.49]	chr1	110165	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000484880.1:ENST00000490406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.45014	2.858185	3.26623	0.00397453	2.31662e-4	0.0322851	0.00354314
chr13	46127196	46127295	14009612	0	-	0.40404	(0.39,0.42]	chr13	1098488	14	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	2.48229	2.8581149999999997	3.23394	8.62602e-4	5.30858e-5	0.0105966	0.00108035
chr2	96860907	96860998	2792230	0	-	0.56044	(0.53,0.59]	chr2	249223	3	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.515	2.85807	3.20114	0.0292633	6.63641e-5	0.129773	0.00129398
chrX	103216789	103216881	18792579	0	+	0.391304	(0.39,0.42]	chrX	1602161	4	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	28	168	2	2.49042	2.8579749999999997	3.22553	8.9447e-6	2.73086e-7	2.51563e-4	1.47734e-5
chr6	34282370	34282470	7672425	0	-	0.51	(0.49,0.53]	chr6	588026	28	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.26641	2.8579600000000003	3.44951	0.0405223	0.0190546	0.153343	0.093872
chr1	112659021	112659101	411358	0	+	0.375	(0.36,0.39]	chr1	40518	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	74	2	2.84003	2.85793	2.87583	8.70639e-5	2.06322e-5	0.00177086	4.99356e-4
chr5	154759888	154759988	6314434	0	+	0.4	(0.39,0.42]	chr5	492407	22	INTRON	INTRON	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6:ENST00000517616.5:ENST00000518892.1:ENST00000521577.1:ENST00000519931.5:ENST00000524248.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.48908	2.85785	3.22662	0.0101318	0.00257296	0.0626311	0.0229363
chr1	21843296	21843367	890839	0	-	0.619718	(0.59,1]	chr1	92326	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.32275	2.857835	3.39292	0.00203416	0.00192565	0.0192213	0.0191769
chr1	1052882	1052978	2423	0	+	0.489583	(0.455,0.49]	chr1	579	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.35515	2.857825	3.3605	0.0140117	0.00147278	0.0767536	0.0157578
chr1	63523133	63523225	1071486	0	-	0.48913	(0.455,0.49]	chr1	109514	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5:ENST00000465781.5:ENST00000460251.5:ENST00000478138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.35515	2.857825	3.3605	0.0140117	0.00147278	0.0767536	0.0157578
chr12	6591986	6592057	13187313	0	-	0.464789	(0.455,0.49]	chr12	1032342	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000537634.2:ENST00000545083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.35515	2.857825	3.3605	0.0140117	0.00147278	0.0767536	0.0157578
chrX	134475180	134475272	18863721	0	+	0.5	(0.49,0.53]	chrX	1607372	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000462974.5:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.38204	2.85764	3.33324	0.0049129	0.00162947	0.0366648	0.0169972
chr1	55067253	55067352	1031127	0	-	0.444444	(0.42,0.455]	chr1	107103	10	UTR3	UTR3:EXON_MRNA	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.34191	2.8575999999999997	3.37329	0.0159091	0.00136107	0.0854674	0.0141115
chr5	96773223	96773320	6117345	0	+	0.453608	(0.42,0.455]	chr5	478607	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAST	ENSG00000153113.24	ENST00000338252.7:ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000674984.1:ENST00000675663.1:ENST00000675267.1:ENST00000675266.1:ENST00000395813.5:ENST00000511049.5:ENST00000309190.9:ENST00000674587.1:ENST00000675033.1:ENST00000675479.1:ENST00000437034.6:ENST00000484552.6:ENST00000325674.11:ENST00000675185.1:ENST00000510098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.34191	2.8575999999999997	3.37329	0.0159091	0.00136107	0.0854674	0.0141115
chr8	100919103	100919202	9976207	0	-	0.50505	(0.49,0.53]	chr8	752728	27	UTR3	UTR3:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	176	2	2.77248	2.85751	2.94254	3.23505e-6	1.92796e-6	1.18374e-4	6.96376e-5
chr19	46845992	46846085	17595708	0	-	0.516129	(0.49,0.53]	chr19	1481458	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	AP2S1	ENSG00000042753.12	ENST00000352203.8:ENST00000593442.5:ENST00000599990.5:ENST00000601498.5:ENST00000263270.11:ENST00000597020.5:ENST00000601649.1:ENST00000597421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.48488	2.85747	3.23006	0.032052	0.00253719	0.133433	0.0233955
chr16	71928709	71928808	15733932	0	+	0.393939	(0.39,0.42]	chr16	1253455	10	UTR3	UTR3:EXON_MRNA	IST1	ENSG00000182149.21	ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000329908.12:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	33	2	2.38682	2.8574650000000004	3.32811	0.00228306	0.00182819	0.0209856	0.0183913
chr7	93208777	93208876	8927814	0	-	0.414141	(0.39,0.42]	chr7	681279	3	CDS	CDS:EXON_MRNA	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.38682	2.8574650000000004	3.32811	0.00228306	0.00182819	0.0209856	0.0183913
chr11	106091323	106091400	12122332	0	+	0.38961	(0.36,0.39]	chr11	933137	1	CDS	CDS:UTR3:EXON_MRNA	AASDHPPT	ENSG00000149313.11	ENST00000533423.5:ENST00000524411.5:ENST00000525660.1:ENST00000278618.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.69035	2.85716	3.02397	0.00674398	0.00123789	0.0461258	0.013161
chr3	179580639	179580701	3928622	0	+	0.370968	(0.36,0.39]	chr3	330192	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000487978.5:ENST00000467615.5:ENST00000479056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.69035	2.85716	3.02397	0.00674398	0.00123789	0.0461258	0.013161
chr1	28473752	28473852	116797	0	+	0.53	(0.49,0.53]	chr1	14233	3	CDS	CDS:UTR3:EXON_MRNA	PHACTR4	ENSG00000204138.13	ENST00000632421.1:ENST00000373839.8:ENST00000493669.2:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.56183	2.8569500000000003	3.15207	0.0261296	0.00347189	0.118976	0.0286293
chr10	110284887	110284987	11250192	0	+	0.5	(0.49,0.53]	chr10	857032	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000361248.8:ENST00000239007.11:ENST00000460667.5:ENST00000393134.5:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651516.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000651109.1:ENST00000652463.1:ENST00000650810.1:ENST00000650952.1:ENST00000484030.5:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000652323.1:ENST00000369612.1:ENST00000651112.1:ENST00000485566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.56183	2.8569500000000003	3.15207	0.0261296	0.00347189	0.118976	0.0286293
chr18	31086658	31086742	17058547	0	-	0.52381	(0.49,0.53]	chr18	1401835	2	CDS	CDS:EXON_MRNA	DSC2	ENSG00000134755.18	ENST00000251081.8:ENST00000280904.11:ENST00000648081.1:ENST00000682357.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.56183	2.8569500000000003	3.15207	0.0261296	0.00347189	0.118976	0.0286293
chr3	127617278	127617341	3723562	0	+	0.52381	(0.49,0.53]	chr3	318280	1	CDS	CDS:UTR3:EXON_MRNA	MCM2	ENSG00000073111.14	ENST00000474964.5:ENST00000265056.12:ENST00000477668.5:ENST00000491422.1:ENST00000473785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.56183	2.8569500000000003	3.15207	0.0261296	0.00347189	0.118976	0.0286293
chr3	129257469	129257548	3730416	0	+	0.518987	(0.49,0.53]	chr3	318905	1	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.56183	2.8569500000000003	3.15207	0.0261296	0.00347189	0.118976	0.0286293
chr1	229460689	229460769	1542015	0	-	0.4	(0.39,0.42]	chr1	154397	2	CDS	CDS:EXON_MRNA	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.3855	2.856805	3.32811	0.0049615	0.00182819	0.0368419	0.0183913
chr1	235128615	235128715	1560267	0	-	0.58	(0.53,0.59]	chr1	156045	1	CDS_START	CDS_START:CDS:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	19	167	2	2.76184	2.856745	2.95165	3.81017e-5	1.16157e-6	9.14235e-4	4.53658e-5
chr6	27824091	27824124	7105153	0	+	0.545455	(0.53,0.59]	chr6	543464	1	UTR5	UTR5:EXON_MRNA	H4C11	ENSG00000197238.5	ENST00000355057.3	protein_coding	protein_coding	protein_coding	protein_coding	15	143	2	2.31344	2.856745	3.40005	6.47209e-4	1.45827e-7	0.00801134	8.6927e-6
chr1	67413206	67413263	1079138	0	-	0.526316	(0.49,0.53]	chr1	110138	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5:ENST00000493607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	76	2	2.63677	2.856535	3.0763	1.51203e-4	4.23786e-5	0.00275083	8.98949e-4
chr17	32369598	32369659	16200646	0	+	0.540984	(0.53,0.59]	chr17	1308197	1	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	2.3186	2.8563799999999997	3.39416	0.00299541	0.00126006	0.0256157	0.013837
chr14	30877649	30877728	14201168	0	+	0.481013	(0.455,0.49]	chr14	1112874	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000553772.5:ENST00000475087.5:ENST00000556908.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000553833.5:ENST00000557065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.50904	2.85626	3.20348	0.0310515	3.27782e-4	0.131262	0.0046686
chr18	9518120	9518219	16753794	0	+	0.50505	(0.49,0.53]	chr18	1381572	9	UTR3	UTR3:EXON_MRNA:INTRON	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8:ENST00000609094.2	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	1.77058	2.856175	3.94177	0.0133397	0.0104929	0.0743125	0.063428
chrX	109641633	109641733	19168154	0	-	0.28	[0,0.29]	chrX	1630379	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL4	ENSG00000068366.21	ENST00000505075.1:ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.42645	2.85614	3.28583	0.0123114	0.00346525	0.070688	0.0293796
chr17	28723570	28723618	16177299	0	+	0.5	(0.49,0.53]	chr17	1305502	1	CDS	CDS:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1:ENST00000580755.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	130	2	2.56298	2.856045	3.14911	1.28066e-5	9.363e-6	3.70041e-4	2.60888e-4
chr20	32849615	32849714	17755869	0	+	0.515152	(0.49,0.53]	chr20	1498956	10	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	15	94	2	2.07623	2.85597	3.63571	6.16343e-4	3.18193e-6	0.00767091	1.16805e-4
chrX	48793973	48794064	18693025	0	+	0.659341	(0.59,1]	chrX	1594413	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.08709	2.855955	3.62482	0.00890645	7.40647e-4	0.0565003	0.00925967
chr12	21635520	21635580	13236603	0	-	0.516667	(0.49,0.53]	chr12	1037942	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000648372.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	52	2	2.38935	2.855775	3.3222	0.00488689	2.96558e-5	0.0376157	6.71364e-4
chr21	8437738	8437837	18041921	0	+	0.525253	(0.49,0.53]	chr21	1530900	47	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	3241	22995	2	2.6535	2.855655	3.05781	3.1409e-8	3.03957e-10	2.07538e-6	4.04127e-8
chr13	27069282	27069382	13937636	0	-	0.4	(0.39,0.42]	chr13	1093836	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	USP12	ENSG00000152484.14	ENST00000282344.11	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.38313	2.85562	3.32811	0.0128066	0.00182819	0.0725185	0.0183913
chr11	78079578	78079644	12477644	0	-	0.621212	(0.59,1]	chr11	970665	1	CDS	CDS:EXON_MRNA	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1:ENST00000528164.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.77418	2.85558	2.93698	0.0160729	0.0015925	0.0860154	0.0159023
chr10	17229614	17229707	10938770	0	+	0.709677	(0.59,1]	chr10	832983	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000497849.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	138	2	2.78797	2.855575	2.92318	2.1998e-4	1.92669e-4	0.00366674	0.00306375
chr12	53016472	53016541	12884385	0	+	0.449275	(0.42,0.455]	chr12	1001732	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	44	2	2.2473	2.855575	3.46385	0.0048106	7.26611e-5	0.0371037	0.00139386
chrX	110198519	110198619	19169146	0	-	0.48	(0.455,0.49]	chrX	1630484	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	AMMECR1	ENSG00000101935.11	ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.78188	2.855445	2.92901	0.00141135	7.46087e-4	0.0151901	0.00892618
chr6	163566720	163566795	7540791	0	+	0.533333	(0.53,0.59]	chr6	575641	1	CDS	CDS:UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000545607.5:ENST00000537883.5:ENST00000544361.1:ENST00000541696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	82	2	2.80515	2.855405	2.90566	6.42453e-4	2.57729e-5	0.00850441	5.97507e-4
chr9	131187288	131187364	10496252	0	+	0.552632	(0.53,0.59]	chr9	793320	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.5:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	82	2	2.80515	2.855405	2.90566	6.42453e-4	2.57729e-5	0.00850441	5.97507e-4
chr10	69172545	69172644	11094679	0	+	0.373737	(0.36,0.39]	chr10	843467	14	UTR3	UTR3:EXON_MRNA	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000263559.11	protein_coding	protein_coding	protein_coding	protein_coding	8	50	2	2.35478	2.855315	3.3558500000000002	0.00193274	2.39157e-5	0.0192272	5.64568e-4
chr12	56645353	56645453	13352189	0	-	0.48	(0.455,0.49]	chr12	1051772	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.40664	2.8552400000000002	3.30384	0.0123662	0.00184955	0.0705839	0.0178046
chr1	53014954	53015020	197548	0	+	0.484848	(0.455,0.49]	chr1	25163	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000430330.6:ENST00000408941.7:ENST00000533119.1:ENST00000484100.5:ENST00000478274.6:ENST00000435345.6:ENST00000488965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.50904	2.854865	3.20069	0.0310515	0.00285821	0.131262	0.0245841
chr11	62762866	62762946	11973859	0	+	0.4875	(0.455,0.49]	chr11	917889	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	POLR2G	ENSG00000168002.12	ENST00000533442.5:ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000531996.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.50904	2.854865	3.20069	0.0310515	0.00285821	0.131262	0.0245841
chr15	57232290	57232360	14949577	0	+	0.471429	(0.455,0.49]	chr15	1174874	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.50904	2.854865	3.20069	0.0310515	0.00285821	0.131262	0.0245841
chr17	44211289	44211331	16557205	0	-	0.47619	(0.455,0.49]	chr17	1359135	1	CDS	CDS:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6:ENST00000527034.5:ENST00000533177.5:ENST00000393606.7:ENST00000526094.5:ENST00000529383.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.50904	2.854865	3.20069	0.0310515	0.00285821	0.131262	0.0245841
chr2	10790833	10790933	2510798	0	-	0.46	(0.455,0.49]	chr2	226697	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.50904	2.854865	3.20069	0.0310515	0.00285821	0.131262	0.0245841
chr7	35635377	35635458	8769597	0	-	0.481481	(0.455,0.49]	chr7	668853	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HERPUD2	ENSG00000122557.11	ENST00000311350.8:ENST00000396081.5:ENST00000426180.1:ENST00000438224.5:ENST00000413517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.50904	2.854865	3.20069	0.0310515	0.00285821	0.131262	0.0245841
chr22	31957422	31957512	18351661	0	+	0.4	(0.39,0.42]	chr22	1560136	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	65	2	2.27503	2.85478	3.43453	0.0025739	3.22227e-6	0.0235767	1.07321e-4
chr12	101401117	101401173	13506274	0	-	0.375	(0.36,0.39]	chr12	1061600	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000550597.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	2.70772	2.854435	3.00115	0.0012486	1.92058e-4	0.0137762	0.00305488
chr11	67611136	67611207	11997074	0	+	0.507042	(0.49,0.53]	chr11	923218	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000526770.5:ENST00000526169.1:ENST00000533919.5:ENST00000527355.5:ENST00000527923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	56	2	2.51367	2.85425	3.19483	0.00120983	6.77168e-5	0.0135286	0.0013157
chr1	226380071	226380146	1533218	0	-	0.506667	(0.49,0.53]	chr1	153472	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.26641	2.853955	3.4415	0.0190546	9.98297e-4	0.093872	0.0111246
chr22	17592404	17592493	18423761	0	-	0.52809	(0.49,0.53]	chr22	1569460	4	UTR3	UTR3:EXON_MRNA	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.26641	2.853955	3.4415	0.0190546	9.98297e-4	0.093872	0.0111246
chr5	135335075	135335141	6847175	0	-	0.5	(0.49,0.53]	chr5	523984	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MACROH2A1	ENSG00000113648.16	ENST00000511689.5:ENST00000512507.5:ENST00000451949.6:ENST00000304332.8:ENST00000312469.8:ENST00000360597.8:ENST00000511494.5:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1:ENST00000505827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.26641	2.853955	3.4415	0.0190546	9.98297e-4	0.093872	0.0111246
chr7	135394116	135394215	9083668	0	-	0.50505	(0.49,0.53]	chr7	693471	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CNOT4	ENSG00000080802.19	ENST00000541284.5:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.26641	2.853955	3.4415	0.0190546	9.98297e-4	0.093872	0.0111246
chr16	2176865	2176962	15491259	0	+	0.463918	(0.455,0.49]	chr16	1227028	4	UTR3	UTR3:EXON_MRNA	TRAF7	ENSG00000131653.13	ENST00000326181.11	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.63872	2.85393	3.06914	0.00510378	6.6649e-4	0.0390492	0.00820018
chr5	151797313	151797370	6299686	0	+	0.473684	(0.455,0.49]	chr5	491926	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000678500.1:ENST00000679135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.69344	2.85377	3.0141	0.0176068	9.3076e-4	0.0925619	0.0111917
chr20	5115282	5115362	17887786	0	-	0.3875	(0.36,0.39]	chr20	1514075	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	10	65	2	2.19449	2.85366	3.51283	0.00263771	1.73355e-6	0.0239302	6.35767e-5
chr7	102667185	102667264	8956637	0	-	0.506329	(0.49,0.53]	chr7	685401	3	CDS	CDS:EXON_MRNA:INTRON	RP11-514P8.10:RP11-577H5.5:POLR2J2	ENSG00000279168.2:ENSG00000267645.5:ENSG00000228049.7	ENST00000639209.1:ENST00000476151.5:ENST00000358438.6:ENST00000333432.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	5	44	2	2.11783	2.853545	3.58926	0.0142725	3.32125e-5	0.0780078	7.33555e-4
chr12	56113176	56113272	12898097	0	+	0.46875	(0.455,0.49]	chr12	1004172	4	UTR3	UTR3:EXON_MRNA:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	13	92	2	2.65694	2.8534300000000004	3.04992	7.76094e-5	8.41904e-6	0.00162479	2.39248e-4
chr9	78329635	78329726	10321096	0	+	0.230769	[0,0.29]	chr9	777290	7	UTR3	UTR3:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.42058	2.853205	3.28583	0.00490744	0.00346525	0.0366648	0.0293796
chr7	97868993	97869074	8940787	0	-	0.481481	(0.455,0.49]	chr7	682280	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000442734.5:ENST00000495255.1:ENST00000437657.5:ENST00000448127.1:ENST00000453600.5:ENST00000451771.5:ENST00000414884.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	7	41	2	1.89004	2.85314	3.81624	0.00821956	1.48205e-4	0.0534646	0.00269793
chr2	37203650	37203749	1742662	0	+	0.424242	(0.42,0.455]	chr2	169570	19	UTR3	UTR3:EXON_MRNA:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000392061.6	protein_coding	protein_coding	protein_coding	protein_coding	10	74	2	2.56101	2.8531	3.14519	4.9746e-4	9.5869e-6	0.00697309	2.66446e-4
chr6	149378325	149378413	7480746	0	+	0.420455	(0.42,0.455]	chr6	571630	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.33282	2.853055	3.37329	0.00677333	0.00136107	0.0462932	0.0141115
chr11	57326406	57326478	12394032	0	-	0.541667	(0.53,0.59]	chr11	958504	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	29	2	1.39828	2.85302	4.30776	0.0486819	0.00407289	0.175495	0.0324137
chr11	12979535	12979633	12278005	0	-	0.418367	(0.39,0.42]	chr11	949302	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6	lncRNA	lncRNA	lncRNA	lncRNA	2	18	2	2.37759	2.85285	3.32811	0.0428865	0.00182819	0.161091	0.0183913
chr6	136279766	136279866	7982524	0	-	0.4	(0.39,0.42]	chr6	610368	1	CDS_START	CDS_START:CDS:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5:ENST00000528229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.37759	2.85285	3.32811	0.0428865	0.00182819	0.161091	0.0183913
chr14	100361797	100361897	14788788	0	-	0.52	(0.49,0.53]	chr14	1158743	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	49	2	2.26641	2.852815	3.43922	0.0190546	1.33812e-5	0.093872	3.50276e-4
chr17	81511351	81511433	16707875	0	-	0.585366	(0.53,0.59]	chr17	1377335	3	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	155	2	2.8467	2.85276	2.85882	1.92776e-5	3.76119e-6	5.19221e-4	1.2226e-4
chr7	151075254	151075338	8617529	0	+	0.630952	(0.59,1]	chr7	658383	1	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	54	2	2.61074	2.852645	3.09455	0.025486	7.92671e-4	0.117089	0.00933379
chr2	73252761	73252861	1885510	0	+	0.64	(0.59,1]	chr2	178587	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.40785	2.85264	4.29743	0.0398271	2.81132e-5	0.152926	7.10133e-4
chr10	79313773	79313866	11148585	0	+	0.569892	(0.53,0.59]	chr10	847409	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.79538	2.85258	2.90978	0.00857883	2.47731e-4	0.0552386	0.00374232
chr12	3211832	3211917	13174256	0	-	0.529412	(0.49,0.53]	chr12	1030788	3	EXON_PSEUDO	EXON_PSEUDO	RP11-543P15.1	ENSG00000227081.5	ENST00000495392.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	150	2	2.45285	2.852265	3.25168	1.24338e-4	1.51592e-7	0.00236076	8.00968e-6
chr5	115614308	115614408	6776989	0	-	0.35	(0.33,0.36]	chr5	519913	12	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.7655	2.85217	2.93884	0.0175892	0.00135211	0.0918323	0.0140654
chr8	86556101	86556180	9457683	0	+	0.35443	(0.33,0.36]	chr8	720289	1	CDS	CDS:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.7655	2.85217	2.93884	0.0175892	0.00135211	0.0918323	0.0140654
chr7	100098214	100098290	8949681	0	-	0.513158	(0.49,0.53]	chr7	683542	2	CDS	CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	130	2	2.64762	2.8521099999999997	3.0566	1.15533e-5	7.9669e-6	3.09736e-4	2.49448e-4
chr1	19167161	19167231	876621	0	-	0.457143	(0.455,0.49]	chr1	90275	3	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	2.04847	2.85196	3.65545	0.0192065	3.50134e-4	0.0943643	0.0049086
chr16	400424	400506	15481511	0	+	0.585366	(0.53,0.59]	chr16	1224422	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000620944.4:ENST00000621774.4:ENST00000219479.7:ENST00000448828.5:ENST00000444498.5:ENST00000460297.1:ENST00000382940.8:ENST00000433358.5:ENST00000468031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	155	2	2.44938	2.8519050000000004	3.25443	1.90517e-4	2.99174e-7	0.0032874	1.42883e-5
chr19	48922613	48922708	17367852	0	+	0.6	(0.59,1]	chr19	1442160	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	101	2	2.48128	2.85184	3.2224	9.61327e-4	4.73062e-4	0.0107621	0.00668763
chr8	108248612	108248702	10002790	0	-	0.477778	(0.455,0.49]	chr8	754233	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	57	417	2	2.59156	2.851815	3.11207	2.61117e-6	4.54424e-9	9.89086e-5	3.92524e-7
chr17	35641876	35641975	16206666	0	+	0.484848	(0.455,0.49]	chr17	1309077	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	1.96875	2.851435	3.73412	0.0480352	1.26741e-5	0.180552	3.34022e-4
chr4	119298679	119298778	5619256	0	-	0.343434	(0.33,0.36]	chr4	447755	24	UTR3	UTR3:EXON_MRNA	C4orf3	ENSG00000164096.13	ENST00000399075.6:ENST00000504110.2	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.25264	2.8513900000000003	3.45014	0.00367014	8.23333e-5	0.0308215	0.00155613
chr6	135198907	135198914	7414890	0	+	0.142857	[0,0.29]	chr6	568313	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	23	2	2.0001	2.85131	3.70252	0.0227161	2.87026e-4	0.107633	0.00422471
chr11	22822918	22823018	12308786	0	-	0.3	(0.29,0.33]	chr11	952220	41	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SVIP	ENSG00000198168.9	ENST00000525670.5:ENST00000354193.5:ENST00000533774.5:ENST00000530199.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.22218	2.851095	3.48001	0.023782	0.00126219	0.109413	0.013837
chrX	111624209	111624295	19174311	0	-	0.616279	(0.59,1]	chrX	1630749	1	EXON_PSEUDO	EXON_PSEUDO	RPL18AP15	ENSG00000236189.2	ENST00000430258.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	65	2	2.84944	2.8510850000000003	2.85273	0.0128238	6.88883e-4	0.0719798	0.00841789
chr11	14494209	14494285	12281935	0	-	0.381579	(0.36,0.39]	chr11	949673	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPB1:RP11-140L24.4	ENSG00000129083.13:ENSG00000256206.2	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5:ENST00000529866.5:ENST00000534771.1:ENST00000555531.1:ENST00000533096.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	39	2	2.70097	2.85106	3.00115	0.0012486	4.47648e-4	0.0137762	0.00602369
chr19	975541	975641	17190439	0	+	0.34	(0.33,0.36]	chr19	1411266	36	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.97842	2.851035	3.72365	0.0469469	3.19155e-4	0.171977	0.00491578
chr18	3256156	3256236	16729743	0	+	0.225	[0,0.29]	chr18	1380105	4	UTR3	UTR3:EXON_MRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000536605.1:ENST00000580887.5	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.31133	2.8509700000000002	3.39061	0.00696038	0.00134497	0.0474632	0.0140037
chr3	113721562	113721660	4360319	0	-	0.295918	(0.29,0.33]	chr3	363906	53	UTR3	UTR3:EXON_MRNA	NAA50	ENSG00000121579.13	ENST00000240922.8:ENST00000616174.1:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000493454.5:ENST00000481432.5:ENST00000493900.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.62025	2.8509700000000002	3.08169	0.00573581	0.00114594	0.0417422	0.0130468
chr19	47229934	47230032	17596408	0	-	0.510204	(0.49,0.53]	chr19	1481601	11	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.70307	2.85078	2.99849	0.00630123	0.00363585	0.0445415	0.0298137
chr10	128106645	128106744	11745090	0	-	0.474747	(0.455,0.49]	chr10	896083	42	CDS	CDS:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.30139	2.85074	3.40009	0.0530131	0.00120619	0.195536	0.0129255
chr5	138391972	138392068	6244197	0	+	0.46875	(0.455,0.49]	chr5	486509	11	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.30139	2.85074	3.40009	0.0530131	0.00120619	0.195536	0.0129255
chr7	75536380	75536480	8859882	0	-	0.46	(0.455,0.49]	chr7	677095	32	UTR3	UTR3:EXON_MRNA	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.30139	2.85074	3.40009	0.0530131	0.00120619	0.195536	0.0129255
chrX	3867412	3867511	18932458	0	-	0.484848	(0.455,0.49]	chrX	1613499	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000669719.1:ENST00000655273.1:ENST00000650538.1:ENST00000438107.1	lncRNA	lncRNA	lncRNA	lncRNA	2	21	2	2.30139	2.85074	3.40009	0.0530131	0.00120619	0.195536	0.0129255
chr15	77615013	77615110	15391771	0	-	0.597938	(0.59,1]	chr15	1216760	10	CDS	CDS:EXON_MRNA	LINGO1	ENSG00000169783.13	ENST00000355300.7:ENST00000561030.5:ENST00000557798.1	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.71222	2.85067	2.9891200000000002	0.00823979	0.00398753	0.0540283	0.031888
chr1	84650424	84650475	1131659	0	-	0.392157	(0.39,0.42]	chr1	112690	1	CDS	CDS:UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1:ENST00000490476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.70591	2.8504899999999997	2.99507	0.0185716	0.00637824	0.0932453	0.0449937
chr11	118472969	118473065	12158618	0	+	0.416667	(0.39,0.42]	chr11	936998	6	CDS	CDS:EXON_MRNA:INTRON	RP11-770J1.8:KMT2A	ENSG00000285827.1:ENSG00000118058.23	ENST00000648261.1:ENST00000389506.10:ENST00000534358.8:ENST00000531904.6:ENST00000649699.1:ENST00000533790.2:ENST00000527869.6:ENST00000649690.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.70591	2.8504899999999997	2.99507	0.0185716	0.00637824	0.0932453	0.0449937
chr4	57025376	57025456	4851239	0	+	0.4125	(0.39,0.42]	chr4	399857	1	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.70591	2.8504899999999997	2.99507	0.0185716	0.00637824	0.0932453	0.0449937
chr6	34245653	34245749	7124351	0	+	0.65625	(0.59,1]	chr6	548262	9	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	63	908	2	2.84243	2.85022	2.85801	2.71357e-6	1.16639e-6	1.02014e-4	4.55437e-5
chr9	93476255	93476338	10362409	0	+	0.445783	(0.42,0.455]	chr9	780100	1	CDS	CDS:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.07164	2.8501	3.62856	0.0101168	4.02604e-4	0.0626311	0.00549837
chr4	26433756	26433854	4766708	0	+	0.387755	(0.36,0.39]	chr4	394281	29	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.63702	2.84997	3.06292	0.00499846	0.00212882	0.0370021	0.0206577
chr12	54241654	54241754	13342943	0	-	0.46	(0.455,0.49]	chr12	1049602	103	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6:ENST00000547872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	87	2	2.37552	2.849955	3.32439	0.00134626	9.59036e-7	0.0145759	3.86185e-5
chr2	85597103	85597196	1925163	0	+	0.505376	(0.49,0.53]	chr2	181181	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF181	ENSG00000168894.10	ENST00000441634.5:ENST00000306368.9:ENST00000443647.5:ENST00000456023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	2.59881	2.849955	3.1011	0.00184545	5.69237e-4	0.0178046	0.00778538
chr15	41481083	41481182	14887015	0	+	0.565657	(0.53,0.59]	chr15	1169493	5	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.14	ENST00000389629.8	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.8006	2.84988	2.89916	0.00890406	0.00233666	0.0565003	0.0221314
chr2	70662432	70662531	2726137	0	-	0.545455	(0.53,0.59]	chr2	242862	58	UTR3	UTR3:EXON_MRNA:INTRON	ADD2	ENSG00000075340.23	ENST00000403045.6:ENST00000264436.9:ENST00000407644.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	43	2	1.61377	2.8498799999999997	4.08599	0.0436338	3.38473e-5	0.170594	7.45971e-4
chr10	110895947	110896017	11253040	0	+	0.4	(0.39,0.42]	chr10	857372	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000280154.12:ENST00000462577.5:ENST00000483595.1:ENST00000498367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.81106	2.84971	2.88836	0.0102432	6.4431e-4	0.062872	0.00799617
chr6	38684373	38684443	7689718	0	-	0.428571	(0.42,0.455]	chr6	589591	1	CDS	CDS:EXON_MRNA	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	11	77	2	2.7447	2.849685	2.95467	7.96786e-5	3.71937e-5	0.00166095	8.07933e-4
chr17	32482124	32482223	16201213	0	+	0.30303	(0.29,0.33]	chr17	1308289	16	UTR3	UTR3:EXON_MRNA	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	13	50	2	1.29561	2.84958	4.40355	0.0361139	1.11876e-7	0.145024	6.92817e-6
chr20	47298801	47298874	17994015	0	-	0.534247	(0.53,0.59]	chr20	1525041	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.14885	2.84943	3.55001	0.0262993	6.11776e-4	0.117164	0.00818575
chr11	66643546	66643643	11991532	0	+	0.536082	(0.53,0.59]	chr11	922205	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	31	2	2.78899	2.849385	2.90978	0.00857883	0.00245784	0.0552386	0.0221765
chrX	155943289	155943385	18924243	0	+	0.40625	(0.39,0.42]	chrX	1612670	13	UTR3	UTR3:EXON_MRNA	VAMP7	ENSG00000124333.16	ENST00000286448.12:ENST00000262640.11	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	2.38766	2.84938	3.3111	0.00119001	2.11919e-4	0.0128045	0.00357806
chr15	57954999	57955097	15305104	0	-	0.44898	(0.42,0.455]	chr15	1208082	17	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	84	2	2.75609	2.849185	2.94228	4.33801e-5	3.77954e-5	0.00100722	8.19625e-4
chr12	104488428	104488528	13059491	0	+	0.39	(0.36,0.39]	chr12	1017729	305	INTRON	INTRON	CHST11	ENSG00000171310.11	ENST00000303694.6:ENST00000547956.1:ENST00000549260.5:ENST00000546689.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.63521	2.849065	3.06292	0.00633242	0.00499846	0.0446708	0.0370021
chr3	33826529	33826580	3399476	0	+	0.372549	(0.36,0.39]	chr3	295677	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000484478.5:ENST00000459659.1:ENST00000412887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.63521	2.849065	3.06292	0.00633242	0.00499846	0.0446708	0.0370021
chr4	56403112	56403185	5434752	0	-	0.383562	(0.36,0.39]	chr4	435080	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000507648.5:ENST00000510643.5:ENST00000507724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	2.63521	2.849065	3.06292	0.00633242	0.00499846	0.0446708	0.0370021
chr9	73158535	73158601	10304663	0	+	0.393939	(0.39,0.42]	chr9	776013	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000468639.5:ENST00000415424.5:ENST00000376911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	35	2	2.67296	2.849065	3.02517	0.00159022	8.3811e-4	0.0168452	0.00981548
chr9	94460083	94460179	10367797	0	+	0.395833	(0.39,0.42]	chr9	780591	8	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3:ENST00000673506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	35	2	2.67296	2.849065	3.02517	0.00159022	8.3811e-4	0.0168452	0.00981548
chr17	47219954	47220053	16248573	0	+	0.646465	(0.59,1]	chr17	1316196	1	CDS	CDS:UTR3:EXON_MRNA	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1:ENST00000570671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	68	2	1.87624	2.84901	3.82178	0.0194045	2.76767e-4	0.0944333	0.00409634
chr12	93399578	93399677	13019149	0	+	0.363636	(0.36,0.39]	chr12	1013446	3	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5:ENST00000548662.5	protein_coding	protein_coding	protein_coding	protein_coding	21	128	2	2.83875	2.848995	2.85924	2.3156e-5	1.24642e-6	6.05642e-4	4.82472e-5
chr19	46775240	46775329	17595457	0	-	0.460674	(0.455,0.49]	chr19	1481382	5	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.56938	2.8489050000000002	3.12843	0.00635313	0.00392855	0.0449666	0.0322851
chr8	143915989	143916082	10146634	0	-	0.419355	(0.39,0.42]	chr8	762999	10	UTR3	UTR3:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.5823	2.8488949999999997	3.11549	0.00403491	0.00246531	0.032143	0.0230262
chr19	1599352	1599439	17419435	0	-	0.563218	(0.53,0.59]	chr19	1452635	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AC005943.2:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5:ENST00000585671.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	36	2	2.23406	2.848775	3.46349	0.00870728	9.2216e-4	0.0558165	0.0104432
chr1	193096526	193096624	1428727	0	-	0.295918	(0.29,0.33]	chr1	143577	7	UTR3	UTR3:EXON_MRNA	GLRX2	ENSG00000023572.10	ENST00000608166.2:ENST00000367440.3:ENST00000367439.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	14	2	1.83055	2.84853	3.86651	0.0348758	0.0112245	0.144642	0.0665375
chr17	28553754	28553847	16485693	0	-	0.612903	(0.59,1]	chr17	1347682	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:PIGS	ENSG00000258472.9:ENSG00000087111.21	ENST00000481916.6:ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.84748	2.84846	2.84944	0.0128238	0.0124539	0.0719798	0.0712518
chr21	46161553	46161629	18280634	0	-	0.671053	(0.59,1]	chr21	1550788	2	CDS	CDS:EXON_MRNA	SPATC1L	ENSG00000160284.15	ENST00000330205.10:ENST00000291672.6	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.84748	2.84846	2.84944	0.0128238	0.0124539	0.0719798	0.0712518
chr9	35072589	35072668	10638255	0	-	0.594937	(0.59,1]	chr9	804592	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000676836.2:ENST00000480327.2:ENST00000681845.1:ENST00000680079.1:ENST00000681386.1:ENST00000679392.1:ENST00000680575.1:ENST00000680108.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.84748	2.84846	2.84944	0.0128238	0.0124539	0.0719798	0.0712518
chr1	225783299	225783368	737859	0	+	0.376812	(0.36,0.39]	chr1	74370	1	CDS	CDS:EXON_MRNA	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	44	2	2.52546	2.848455	3.17145	4.15364e-4	3.99865e-4	0.00608105	0.0054764
chrX	123671668	123671761	19198890	0	-	0.333333	(0.33,0.36]	chrX	1632618	1	CDS	CDS:UTR3:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.53712	2.84844	3.15976	0.00766322	0.00437542	0.0503696	0.0340502
chr7	92456371	92456462	8399110	0	+	0.428571	(0.42,0.455]	chr7	639706	1	CDS	CDS:UTR3:EXON_MRNA	GATAD1	ENSG00000157259.8	ENST00000287957.5:ENST00000645746.1:ENST00000493878.1:ENST00000465247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	35	2	2.34191	2.84841	3.35491	0.0159091	1.39104e-4	0.0854674	0.00235518
chr22	21610856	21610949	18303069	0	+	0.419355	(0.39,0.42]	chr22	1554187	1	CDS	CDS:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	159	2	2.83547	2.848345	2.86122	3.44918e-6	1.07519e-6	1.25185e-4	4.25685e-5
chr7	12688595	12688676	8136651	0	+	0.358025	(0.33,0.36]	chr7	621814	4	CDS	CDS:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396662.5:ENST00000356797.7:ENST00000396664.2:ENST00000396663.2:ENST00000651779.1:ENST00000404894.1	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.78785	2.848285	2.90872	0.00115378	4.00944e-4	0.0130851	0.00548902
chr1	247878362	247878461	816538	0	+	0.323232	(0.29,0.33]	chr1	80729	20	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.77585	2.84825	2.92065	0.0143131	0.0117842	0.0780602	0.0686664
chr3	88156730	88156825	3602991	0	+	0.305263	(0.29,0.33]	chr3	310148	2	UTR3	UTR3:EXON_MRNA	C3orf38	ENSG00000179021.10	ENST00000318887.8:ENST00000486971.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.77585	2.84825	2.92065	0.0143131	0.0117842	0.0780602	0.0686664
chr5	37289819	37289918	6539921	0	-	0.292929	(0.29,0.33]	chr5	506493	18	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.77585	2.84825	2.92065	0.0143131	0.0117842	0.0780602	0.0686664
chr1	1661868	1661966	828545	0	-	0.418367	(0.39,0.42]	chr1	82665	5	UTR3	UTR3:EXON_MRNA:INTRON	SLC35E2B	ENSG00000189339.12	ENST00000614300.4:ENST00000617444.5:ENST00000611123.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.27012	2.84811	3.4261	0.00945558	0.00107164	0.0594007	0.0118238
chr8	47972856	47972925	9316253	0	+	0.536232	(0.53,0.59]	chr8	713580	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000523853.1:ENST00000518382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	2.62668	2.848035	3.06939	0.00157636	6.54756e-4	0.015761	0.00860229
chr16	70572011	70572110	15730182	0	+	0.515152	(0.49,0.53]	chr16	1253031	3	UTR3	UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	77	2	2.34715	2.8479	3.34865	8.61126e-4	6.25986e-6	0.010586	1.87037e-4
chr12	57821713	57821813	13358216	0	-	0.55	(0.53,0.59]	chr12	1053218	19	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.69162	2.8477750000000004	4.00393	0.0342431	0.0108084	0.141233	0.064368
chr19	47750231	47750286	17363674	0	+	0.563636	(0.53,0.59]	chr19	1441402	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOP53	ENSG00000105373.19	ENST00000246802.10:ENST00000594525.5:ENST00000600410.5:ENST00000598681.5:ENST00000599582.1:ENST00000595143.5:ENST00000600266.1:ENST00000597985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	24	2	1.69162	2.8477750000000004	4.00393	0.0342431	0.0108084	0.141233	0.064368
chr15	64963120	64963220	15342355	0	-	0.43	(0.42,0.455]	chr15	1211237	2	UTR3	UTR3:EXON_MRNA	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.63665	2.8477699999999997	3.05889	0.00524205	0.0048172	0.0399155	0.0365653
chr10	73767836	73767921	11115837	0	+	0.541176	(0.53,0.59]	chr10	845902	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000496827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	1.87133	2.8476999999999997	3.82407	0.0308819	0.0179666	0.130016	0.0918323
chr19	12813082	12813144	17237476	0	+	0.548387	(0.53,0.59]	chr19	1420817	1	CDS	CDS:UTR3:EXON_MRNA	THSD8:RNASEH2A	ENSG00000284491.3:ENSG00000104889.7	ENST00000639767.2:ENST00000221486.6:ENST00000646769.1:ENST00000593017.2:ENST00000643757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	1.87133	2.8476999999999997	3.82407	0.0308819	0.0179666	0.130016	0.0918323
chr14	67381592	67381690	14360540	0	+	0.377551	(0.36,0.39]	chr14	1122456	1	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.6711	2.8475349999999997	3.02397	0.00674398	0.00434596	0.0461258	0.0335517
chr17	43014993	43015090	16550641	0	-	0.474227	(0.455,0.49]	chr17	1357992	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	2.69828	2.84749	2.9967	0.00650423	4.39828e-4	0.0454205	0.00592532
chr1	65379462	65379524	251104	0	+	0.435484	(0.42,0.455]	chr1	28665	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJC6	ENSG00000116675.16	ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.7523	2.8474649999999997	2.94263	0.0153283	0.00766873	0.0828908	0.0503696
chr19	15611935	15612028	17245483	0	+	0.44086	(0.42,0.455]	chr19	1422501	4	EXON_PSEUDO	EXON_PSEUDO	RPL23AP2	ENSG00000225067.4	ENST00000471227.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.7523	2.8474649999999997	2.94263	0.0153283	0.00766873	0.0828908	0.0503696
chr5	137752448	137752548	6858084	0	-	0.4	(0.39,0.42]	chr5	524499	69	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	11	47	2	1.79638	2.84743	3.89848	0.00518358	9.30194e-5	0.0396423	0.00169783
chr12	108646604	108646703	13530489	0	-	0.373737	(0.36,0.39]	chr12	1063929	16	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5	protein_coding	protein_coding	protein_coding	protein_coding	11	66	2	2.6494	2.8474	3.0454	7.99975e-5	7.17459e-5	0.00151453	0.00151448
chr11	66365935	66366021	12424302	0	-	0.546512	(0.53,0.59]	chr11	964626	1	CDS	CDS:UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	88	2	2.39093	2.847185	3.30344	6.55436e-4	9.28103e-6	0.00860229	2.58687e-4
chr15	90483360	90483437	15100610	0	+	0.376623	(0.36,0.39]	chr15	1188174	1	CDS	CDS:UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000560218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.63115	2.847035	3.06292	0.0245975	0.00499846	0.114841	0.0370021
chr2	32301381	32301438	1712211	0	+	0.385965	(0.36,0.39]	chr2	167954	1	CDS	CDS:UTR3:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000437765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.63115	2.847035	3.06292	0.0245975	0.00499846	0.114841	0.0370021
chr2	131146773	131146872	2065726	0	+	0.383838	(0.36,0.39]	chr2	194095	1	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.63115	2.847035	3.06292	0.0245975	0.00499846	0.114841	0.0370021
chr1	207321765	207321865	686265	0	+	0.77	(0.59,1]	chr1	69466	1	CDS_START	CDS_START:CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.20362	2.8469100000000003	3.4902	0.00565413	0.00130379	0.0412424	0.0142445
chr12	24881355	24881411	13256379	0	-	0.321429	(0.29,0.33]	chr12	1038892	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	6	37	2	1.83055	2.84674	3.86293	0.0348758	5.2702e-6	0.144642	1.61486e-4
chr15	82538221	82538321	15412543	0	-	0.41	(0.39,0.42]	chr15	1218656	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CH17-66N5.1:RPS17:RP11-152F13.10	ENSG00000284803.1:ENSG00000182774.13:ENSG00000260836.2	ENST00000561440.2:ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:lncRNA	7	45	2	2.82444	2.846695	2.86895	0.00177945	1.06946e-4	0.0172974	0.00206452
chr12	57820323	57820422	13358202	0	-	0.464646	(0.455,0.49]	chr12	1053218	5	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	6	47	2	2.53523	2.846675	3.15812	0.00270505	8.56318e-5	0.0243939	0.00160672
chr20	49089676	49089746	17811801	0	+	0.428571	(0.42,0.455]	chr20	1506568	3	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	2.61136	2.84659	3.08182	6.80627e-4	3.33599e-4	0.00876781	0.00472923
chr1	35393666	35393739	137191	0	+	0.438356	(0.42,0.455]	chr1	16887	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1:ENST00000470175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	1.84101	2.846255	3.8515	0.0352234	0.0119089	0.142054	0.0686664
chr1	95150207	95150266	361686	0	+	0.474576	(0.455,0.49]	chr1	35663	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.84079	2.846255	2.85172	0.010864	0.00201021	0.0643837	0.0190112
chr1	161157616	161157693	498753	0	+	0.441558	(0.42,0.455]	chr1	53847	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UFC1	ENSG00000143222.12	ENST00000467540.5:ENST00000368003.6:ENST00000483191.5:ENST00000473766.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	1.84101	2.846255	3.8515	0.0352234	0.0119089	0.142054	0.0686664
chr11	20383301	20383397	11842607	0	+	0.427083	(0.42,0.455]	chr11	906684	2	UTR3	UTR3:EXON_MRNA	HTATIP2	ENSG00000109854.14	ENST00000451739.7:ENST00000421577.6:ENST00000443524.6:ENST00000419348.6:ENST00000531058.1:ENST00000533914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.84101	2.846255	3.8515	0.0352234	0.0119089	0.142054	0.0686664
chr9	33917077	33917137	10237975	0	+	0.45	(0.42,0.455]	chr9	769833	2	CDS	CDS:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.84101	2.846255	3.8515	0.0352234	0.0119089	0.142054	0.0686664
chr14	74734930	74735029	14401170	0	+	0.40404	(0.39,0.42]	chr14	1125404	1	UTR3	UTR3:EXON_MRNA	FCF1	ENSG00000119616.11	ENST00000341162.8:ENST00000553615.5:ENST00000534938.6	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.75252	2.84624	3.93996	0.0297286	0.00841622	0.130016	0.054565
chr6	110894000	110894099	7331122	0	+	0.393939	(0.39,0.42]	chr6	563690	1	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1:ENST00000465404.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	1.79377	2.8461250000000002	3.89848	0.0299302	9.30194e-5	0.129773	0.00169783
chr2	189923530	189923628	2274547	0	+	0.489796	(0.455,0.49]	chr2	206588	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	6	38	2	1.53019	2.846115	4.16204	0.0428973	1.83061e-5	0.161091	4.99708e-4
chr19	1258847	1258946	17192166	0	+	0.353535	(0.33,0.36]	chr19	1411881	17	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.34311	2.84602	3.34893	0.00300559	2.22813e-4	0.0256959	0.00370775
chr2	113958048	113958147	2007127	0	+	0.383838	(0.36,0.39]	chr2	190801	7	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.38564	2.8457749999999997	3.30591	0.0476159	1.89047e-4	0.17993	0.003022
chr11	61802410	61802462	12405925	0	-	0.480769	(0.455,0.49]	chr11	960581	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5:ENST00000542506.5	protein_coding	protein_coding	protein_coding	protein_coding	17	113	2	2.38992	2.8457049999999997	3.30149	1.02231e-4	1.15839e-6	0.00199025	4.5272e-5
chr9	35057116	35057216	10638061	0	-	0.56	(0.53,0.59]	chr9	804498	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000681537.1:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2:ENST00000466100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	37	2	1.88327	2.845665	3.80806	0.0298124	1.65022e-4	0.129773	0.00269147
chr6	75256001	75256101	7800329	0	-	0.36	(0.33,0.36]	chr6	597646	32	UTR3	UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	42	2	1.81756	2.845525	3.87349	0.0223533	4.76264e-6	0.106046	1.49263e-4
chr14	77024732	77024828	14714821	0	-	0.4375	(0.42,0.455]	chr14	1152867	3	UTR3	UTR3:EXON_MRNA	IRF2BPL	ENSG00000119669.5	ENST00000238647.5	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	2.61085	2.84535	3.07985	7.93561e-4	1.37948e-4	0.00988333	0.00233981
chr1	228097913	228098013	744032	0	+	0.6	(0.59,1]	chr1	75098	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000497165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	227	2	2.72962	2.84523	2.96084	2.99317e-4	8.38897e-6	0.00472028	2.38433e-4
chr18	57559144	57559243	17137159	0	-	0.444444	(0.42,0.455]	chr18	1407083	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5:ENST00000591977.5:ENST00000682485.1:ENST00000592699.6:ENST00000651812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	50	2	2.06706	2.845105	3.62315	0.00178874	4.234e-4	0.0173692	0.00613535
chr17	12994962	12995062	16449500	0	-	0.48	(0.455,0.49]	chr17	1342805	1	CDS	CDS:EXON_MRNA	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000480891.5:ENST00000395962.6:ENST00000487229.6:ENST00000465825.5:ENST00000426905.7:ENST00000584650.5:ENST00000491478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.69344	2.8450699999999998	2.9967	0.0176068	0.00650423	0.0925619	0.0454205
chr1	154207552	154207642	1302810	0	-	0.555556	(0.53,0.59]	chr1	131191	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000483282.1:ENST00000493814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	37	2	2.56665	2.845025	3.1234	0.00390623	0.00209536	0.0322851	0.0196588
chr20	41101280	41101353	17789938	0	+	0.424658	(0.42,0.455]	chr20	1503486	2	CDS	CDS:UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	40	2	2.37815	2.84488	3.31161	0.00186138	0.00123168	0.018635	0.0131094
chr11	93755212	93755312	12076407	0	+	0.46	(0.455,0.49]	chr11	930685	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	C11orf54:RP11-606E8.2	ENSG00000182919.15:ENSG00000284057.1	ENST00000528288.5:ENST00000617482.4:ENST00000540113.5:ENST00000331239.8:ENST00000528099.5:ENST00000638767.1:ENST00000530620.5:ENST00000354421.8:ENST00000531650.5:ENST00000527363.5:ENST00000526335.1:ENST00000533154.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.83792	2.84482	2.85172	0.0110512	0.010864	0.0665375	0.0643837
chr12	108658737	108658828	13530622	0	-	0.472527	(0.455,0.49]	chr12	1063971	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552030.5:ENST00000547361.1:ENST00000552871.5:ENST00000547294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.83792	2.84482	2.85172	0.0110512	0.010864	0.0665375	0.0643837
chr16	46662322	46662402	15927140	0	-	0.4625	(0.455,0.49]	chr16	1277411	2	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000562420.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.83792	2.84482	2.85172	0.0110512	0.010864	0.0665375	0.0643837
chr4	138223261	138223324	5665597	0	-	0.47619	(0.455,0.49]	chr4	450236	2	CDS	CDS:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.83792	2.84482	2.85172	0.0110512	0.010864	0.0665375	0.0643837
chr5	168516777	168516863	6369348	0	+	0.465116	(0.455,0.49]	chr5	494747	1	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.83792	2.84482	2.85172	0.0110512	0.010864	0.0665375	0.0643837
chr6	20424324	20424424	7074901	0	+	0.48	(0.455,0.49]	chr6	541429	201	INTRON	INTRON	E2F3	ENSG00000112242.15	ENST00000346618.8:ENST00000613242.4:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.83792	2.84482	2.85172	0.0110512	0.010864	0.0665375	0.0643837
chr1	114393978	114394077	1236941	0	-	0.353535	(0.33,0.36]	chr1	120945	13	UTR3	UTR3:EXON_MRNA	TRIM33	ENSG00000197323.12	ENST00000358465.7	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.68374	2.844735	3.00573	0.00630535	0.00194492	0.044701	0.0193053
chr2	31359279	31359378	2587254	0	-	0.292929	(0.29,0.33]	chr2	232858	87	INTRON	INTRON	XDH	ENSG00000158125.10	ENST00000379416.4	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.24226	2.844615	3.44697	0.0306054	0.00101442	0.130226	0.0112862
chr5	134606457	134606555	6846375	0	-	0.306122	(0.29,0.33]	chr5	523854	55	UTR3	UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000508363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.24226	2.844615	3.44697	0.0306054	0.00101442	0.130226	0.0112862
chr11	68036318	68036381	11997692	0	+	0.603175	(0.59,1]	chr11	923399	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	NDUFS8	ENSG00000110717.13	ENST00000313468.10:ENST00000526446.5:ENST00000528492.1:ENST00000526339.5:ENST00000525419.5:ENST00000524810.5:ENST00000531282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	37	2	2.69477	2.844575	2.99438	0.020208	0.00776449	0.0978331	0.050813
chr1	114718678	114718745	1239603	0	-	0.537313	(0.53,0.59]	chr1	121349	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000483407.1:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.77921	2.844495	2.90978	0.0132865	0.00857883	0.0740932	0.0552386
chr22	31619143	31619237	18473615	0	-	0.553191	(0.53,0.59]	chr22	1576720	8	UTR3	UTR3:EXON_MRNA	PISD	ENSG00000241878.11	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.77921	2.844495	2.90978	0.0132865	0.00857883	0.0740932	0.0552386
chr12	48938946	48939046	13322629	0	-	0.57	(0.53,0.59]	chr12	1045239	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9:ENST00000485410.5:ENST00000447318.6:ENST00000541959.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.7898	2.84448	2.89916	0.0128364	0.00890406	0.0719798	0.0565003
chr14	73715904	73716002	14702324	0	-	0.55102	(0.53,0.59]	chr14	1151256	9	UTR3	UTR3:EXON_MRNA	MIDEAS	ENSG00000156030.13	ENST00000394071.6:ENST00000476562.5:ENST00000286523.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.7898	2.84448	2.89916	0.0128364	0.00890406	0.0719798	0.0565003
chr19	6374810	6374873	17213226	0	+	0.539683	(0.53,0.59]	chr19	1415849	1	CDS	CDS:EXON_MRNA	ALKBH7	ENSG00000125652.8	ENST00000245812.8:ENST00000596657.1:ENST00000599849.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.7898	2.84448	2.89916	0.0128364	0.00890406	0.0719798	0.0565003
chr9	131276004	131276079	10870526	0	-	0.573333	(0.53,0.59]	chr9	824596	3	CDS	CDS:EXON_MRNA	FAM78A	ENSG00000126882.13	ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.7898	2.84448	2.89916	0.0128364	0.00890406	0.0719798	0.0565003
chr6	36924032	36924131	7135750	0	+	0.383838	(0.36,0.39]	chr6	549805	7	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	10	60	2	2.52546	2.844365	3.16327	4.15364e-4	2.37351e-5	0.00608105	5.60496e-4
chr7	6462866	6462965	8664678	0	-	0.272727	[0,0.29]	chr7	662823	19	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2:ENST00000490996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	35	2	1.81505	2.84408	3.87311	0.0409713	5.02275e-6	0.163285	1.55529e-4
chr15	59081109	59081196	14959617	0	+	0.517241	(0.49,0.53]	chr15	1175631	3	CDS	CDS:EXON_MRNA	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000558977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.45798	2.84402	3.23006	0.00353238	0.00253719	0.029076	0.0233955
chr5	150710277	150710374	6914728	0	-	0.443299	(0.42,0.455]	chr5	529276	20	UTR3	UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.44942	2.843905	3.23839	0.0016479	2.92986e-4	0.0163521	0.00464297
chr5	72199480	72199578	6027790	0	+	0.489796	(0.455,0.49]	chr5	472560	58	CDS	CDS:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.69053	2.84375	2.99697	0.0182983	9.57891e-4	0.0925808	0.0107247
chr9	112227482	112227554	10802960	0	-	0.472222	(0.455,0.49]	chr9	818421	2	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.69053	2.84375	2.99697	0.0182983	9.57891e-4	0.0925808	0.0107247
chr3	139373716	139373768	4479638	0	-	0.5	(0.49,0.53]	chr3	372257	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	1.56437	2.8435	4.12263	0.0379797	0.00591451	0.14882600000000001	0.0427941
chr22	20953161	20953259	18300215	0	+	0.397959	(0.39,0.42]	chr22	1553647	35	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	120	2	2.81486	2.8434299999999997	2.872	6.07557e-6	5.87563e-6	1.99765e-4	1.77235e-4
chrX	48528543	48528629	18691860	0	+	0.523256	(0.49,0.53]	chrX	1594150	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000651615.1:ENST00000495186.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	27	2	1.56417	2.8434	4.12263	0.0289719	0.00591451	0.127437	0.0427941
chr17	44206498	44206596	16557137	0	-	0.469388	(0.455,0.49]	chr17	1359090	16	UTR3	UTR3:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6:ENST00000527034.5:ENST00000533177.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	1.96875	2.843365	3.71798	0.0480352	0.0202679	0.180552	0.0984041
chr6	159780934	159781022	8049079	0	-	0.431818	(0.42,0.455]	chr6	615265	1	CDS	CDS:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1	protein_coding	protein_coding	protein_coding	protein_coding	13	88	2	1.98156	2.84333	3.7051	0.00232558	3.77638e-7	0.0220596	1.73699e-5
chr11	123060592	123060660	12636998	0	-	0.455882	(0.455,0.49]	chr11	980725	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000227378.7:ENST00000526110.5:ENST00000533238.5:ENST00000527983.5:ENST00000528292.5:ENST00000532780.5:ENST00000525463.5:ENST00000532167.5:ENST00000525624.5:ENST00000534567.5:ENST00000527387.5:ENST00000532182.5:ENST00000524590.5:ENST00000530391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	121	2	2.52369	2.84328	3.16287	3.87824e-5	1.69166e-6	9.28968e-4	6.21383e-5
chr8	123030604	123030660	10056072	0	-	0.285714	[0,0.29]	chr8	756476	1	CDS	CDS:EXON_MRNA:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.15488	2.843	3.53112	0.0436536	5.30932e-5	0.170594	0.00108035
chr10	68967017	68967110	11093238	0	+	0.44086	(0.42,0.455]	chr10	843246	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	8	61	2	2.47621	2.84299	3.20977	0.00161397	1.69634e-5	0.0169243	4.28575e-4
chr6	27146798	27146855	7648724	0	-	0.508772	(0.49,0.53]	chr6	582724	1	UTR5	UTR5:EXON_MRNA	H2BC12	ENSG00000197903.8	ENST00000356950.2	protein_coding	protein_coding	protein_coding	protein_coding	55	388	2	2.80297	2.84295	2.88293	2.75509e-7	1.02139e-7	1.3291e-5	6.38554e-6
chr20	57408242	57408341	17837048	0	+	0.484848	(0.455,0.49]	chr20	1508358	5	UTR3	UTR3:EXON_MRNA	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000344785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	2.43664	2.842885	3.24913	0.00394058	0.00239443	0.0315828	0.0225356
chr2	15461268	15461337	2529095	0	-	0.449275	(0.42,0.455]	chr2	227468	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	1.97151	2.84258	3.71365	0.0084649	2.63375e-4	0.0546473	0.00427022
chr12	6970622	6970701	13188921	0	-	0.620253	(0.59,1]	chr12	1032819	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1:ENST00000542294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	79	2	2.3821	2.8424	3.3027	0.00554753	2.94605e-4	0.0417049	0.00432147
chrX	154357528	154357623	19278062	0	-	0.557895	(0.53,0.59]	chrX	1638295	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000466319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	1.73953	2.84234	3.94515	0.0146694	3.18429e-6	0.0800115	1.06148e-4
chr19	49497930	49498030	17370807	0	+	0.51	(0.49,0.53]	chr19	1443159	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000596873.1:ENST00000270625.7:ENST00000594493.1:ENST00000601216.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	201	1455	2	2.67783	2.8422549999999998	3.00668	6.36632e-8	2.27113e-9	4.19613e-6	2.15603e-7
chr3	10301203	10301260	4032287	0	-	0.719298	(0.59,1]	chr3	338573	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	114	2	2.63214	2.842235	3.05233	0.005622	4.37725e-5	0.0421873	9.2091e-4
chr1	149842598	149842698	1286946	0	-	0.67	(0.59,1]	chr1	127835	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC18	ENSG00000203812.2	ENST00000369159.2	protein_coding	protein_coding	protein_coding	protein_coding	30	479	2	2.53023	2.84179	3.15335	9.85592e-5	5.75236e-7	0.00178394	2.76816e-5
chr8	20214817	20214892	9220039	0	+	0.48	(0.455,0.49]	chr8	704717	1	CDS	CDS:EXON_MRNA	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.8708	2.841775	3.81275	0.0324007	0.0138827	0.134751	0.0760883
chr21	32268496	32268586	18213036	0	-	0.322222	(0.29,0.33]	chr21	1545409	4	UTR3	UTR3:EXON_MRNA	MIS18A	ENSG00000159055.4	ENST00000290130.4	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.86069	2.841745	3.8228	0.021654	1.45428e-4	0.103926	0.00244094
chr17	28468308	28468406	16175940	0	+	0.367347	(0.36,0.39]	chr17	1305136	6	EXON_PSEUDO	EXON_PSEUDO	RPS7P1	ENSG00000263266.2	ENST00000571702.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	49	2	2.61601	2.8416300000000003	3.06725	3.36245e-4	2.06648e-4	0.00474861	0.00350209
chr1	154251225	154251318	479941	0	+	0.505376	(0.49,0.53]	chr1	49661	3	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.46958	2.841375	3.21317	0.00344146	3.08783e-4	0.0292838	0.00445935
chr1	7977651	7977738	30666	0	+	0.402299	(0.39,0.42]	chr1	3610	1	CDS	CDS:EXON_MRNA	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000377491.5:ENST00000377488.5:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	2.48357	2.841325	3.19908	0.00171404	1.82682e-5	0.017714	4.52458e-4
chr1	114717298	114717395	1239588	0	-	0.340206	(0.33,0.36]	chr1	121344	5	UTR3	UTR3:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5	protein_coding	protein_coding	protein_coding	protein_coding	11	55	2	2.2417	2.840885	3.44007	0.0010466	1.36013e-5	0.0123035	3.54469e-4
chr12	121429465	121429558	13585745	0	-	0.311828	(0.29,0.33]	chr12	1069655	5	UTR3	UTR3:EXON_MRNA	KDM2B	ENSG00000089094.19	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000542973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	2.7441	2.840735	2.93737	0.00826984	0.00173745	0.0534766	0.0179204
chr1	101786534	101786632	1200895	0	-	0.479592	(0.455,0.49]	chr1	117316	3	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	46	2	2.83859	2.840645	2.8427	0.00215336	1.88409e-4	0.0208395	0.00301567
chr12	57820124	57820223	13358200	0	-	0.545455	(0.53,0.59]	chr12	1053218	3	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.73974	2.8404949999999998	2.94125	0.0012261800000000001	9.00802e-4	0.0135648	0.0102618
chr19	19526154	19526254	17264115	0	+	0.57	(0.53,0.59]	chr19	1426406	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFA13:CTC-260F20.3	ENSG00000186010.19:ENSG00000258674.5	ENST00000502506.6:ENST00000507754.9:ENST00000555938.1:ENST00000503283.5:ENST00000586674.1:ENST00000428459.6:ENST00000511584.2:ENST00000511180.4:ENST00000606722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	47	2	2.73974	2.8404949999999998	2.94125	0.0012261800000000001	9.00802e-4	0.0135648	0.0102618
chr3	197783405	197783505	3991881	0	+	0.35	(0.33,0.36]	chr3	336452	16	UTR3	UTR3:EXON_MRNA	FYTTD1	ENSG00000122068.13	ENST00000241502.9	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.17058	2.840475	3.51037	0.01664	5.65559e-5	0.0878065	0.00114087
chr19	49336970	49337033	17369687	0	+	0.698413	(0.59,1]	chr19	1442736	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	40	2	2.28778	2.84035	3.39292	0.0556537	0.00192565	0.191528	0.0191769
chr1	51806793	51806853	1016469	0	-	0.383333	(0.36,0.39]	chr1	105243	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.38564	2.8401899999999998	3.29474	0.0476159	0.00194306	0.17993	0.0185233
chr2	60923632	60923731	1840200	0	+	0.383838	(0.36,0.39]	chr2	174789	12	UTR3	UTR3:EXON_MRNA	REL	ENSG00000162924.15	ENST00000295025.12:ENST00000394479.4	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.38564	2.8401899999999998	3.29474	0.0476159	0.00194306	0.17993	0.0185233
chr16	18792855	18792954	15877074	0	-	0.424242	(0.42,0.455]	chr16	1269296	13	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	212	2	2.59476	2.84018	3.0856	2.02763e-6	9.33938e-7	7.24058e-5	4.1745e-5
chr6	16265917	16266017	7067551	0	+	0.52	(0.49,0.53]	chr6	540898	74	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	150	2	2.65955	2.84011	3.02067	4.52255e-5	4.87999e-7	9.44585e-4	2.42229e-5
chr17	82080516	82080590	16710682	0	-	0.648649	(0.59,1]	chr17	1378140	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	59	2	2.33806	2.8398849999999998	3.34171	0.00632881	0.00234977	0.0448545	0.0222173
chr1	32043780	32043877	125869	0	+	0.319588	(0.29,0.33]	chr1	15466	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	2.27411	2.8398	3.40549	0.00686811	1.12275e-4	0.0468903	0.00199494
chr9	83973901	83973973	10712930	0	-	0.555556	(0.53,0.59]	chr9	810516	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000376256.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	64	2	2.4274	2.839785	3.25217	0.00178327	4.79919e-5	0.017318	0.00109351
chrX	103216607	103216698	18792577	0	+	0.340659	(0.33,0.36]	chrX	1602161	2	UTR3	UTR3:EXON_MRNA	BEX4	ENSG00000102409.10	ENST00000372695.6:ENST00000372691.3	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	2.42919	2.83976	3.25033	0.00151039	4.9864e-5	0.0160934	0.0010249
chr6	7250231	7250328	7031378	0	+	0.340206	(0.33,0.36]	chr6	538755	14	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7:ENST00000349384.10	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	2.78785	2.83972	2.89159	0.00115378	1.48308e-4	0.0130851	0.00248688
chr3	128097299	128097398	4440344	0	-	0.555556	(0.53,0.59]	chr3	368853	1	CDS	CDS:EXON_MRNA	RUVBL1	ENSG00000175792.12	ENST00000585057.5:ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000478892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	36	2	2.05734	2.83969	3.62204	0.0167029	4.3021e-4	0.0883198	0.00620274
chr1	160289276	160289374	1328659	0	-	0.326531	(0.29,0.33]	chr1	135960	8	UTR3	UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.34203	2.839555	3.33708	0.010113	2.90171e-5	0.0626311	6.60417e-4
chr4	1025928	1026025	4678990	0	+	0.556701	(0.53,0.59]	chr4	387668	7	UTR3	UTR3:EXON_MRNA	FGFRL1	ENSG00000127418.15	ENST00000398484.6:ENST00000510644.6:ENST00000264748.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.47	2.83937	3.20874	0.0089333	0.00278422	0.0567495	0.0241009
chr2	96186433	96186532	2789825	0	-	0.464646	(0.455,0.49]	chr2	248609	17	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	57	2	2.59868	2.83905	3.07942	3.61596e-4	1.46687e-4	0.00506298	0.0026854
chrX	49555935	49555998	18694920	0	+	0.587302	(0.53,0.59]	chrX	1594953	1	CDS	CDS:EXON_MRNA:INTRON	GAGE12F:GAGE12E	ENSG00000236362.8:ENSG00000216649.4	ENST00000639028.1:ENST00000381698.4	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.45844	2.8389249999999997	3.21941	0.00930921	0.00266171	0.0587563	0.0240332
chrX	53549322	53549413	19077338	0	-	0.538462	(0.53,0.59]	chrX	1622712	5	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.45844	2.8389249999999997	3.21941	0.00930921	0.00266171	0.0587563	0.0240332
chr1	150577263	150577363	1288950	0	-	0.46	(0.455,0.49]	chr1	128249	32	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	72	2	2.69202	2.838895	2.98577	2.18022e-4	2.99908e-5	0.00363729	6.77365e-4
chr13	91351313	91351391	13817793	0	+	0.487179	(0.455,0.49]	chr13	1086076	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	MIR17HG:MIR18A:MIR19A:MIR20A:MIR19B1:MIR92A1	ENSG00000215417.13:ENSG00000283815.1:ENSG00000284204.1:ENSG00000283762.1:ENSG00000284375.1:ENSG00000283705.1	ENST00000400282.6:ENST00000582141.5:ENST00000581816.1:ENST00000362310.3:ENST00000384878.1:ENST00000362279.1:ENST00000384829.1:ENST00000385233.3	miRNA	miRNA	miRNA:lncRNA	miRNA:retained_intron:lncRNA:primary_miRNA	10	72	2	2.69202	2.838895	2.98577	2.18022e-4	2.99908e-5	0.00363729	6.77365e-4
chr15	43116097	43116196	15244703	0	-	0.434343	(0.42,0.455]	chr15	1201032	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-473C18.6:RPS3AP47	ENSG00000285080.1:ENSG00000205871.5	ENST00000570199.2:ENST00000487100.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	34	2	2.7523	2.8387149999999997	2.92513	0.0153283	3.39829e-4	0.0828908	0.00479167
chr12	56663720	56663815	13352202	0	-	0.347368	(0.33,0.36]	chr12	1051779	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	57	2	2.35083	2.838435	3.32604	0.00132967	7.44914e-6	0.0144372	2.17025e-4
chr20	56399063	56399161	17834466	0	+	0.377551	(0.36,0.39]	chr20	1507907	2	CDS	CDS:UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000415828.5:ENST00000217109.9:ENST00000452950.1:ENST00000493039.5:ENST00000490539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	2.73394	2.8384	2.94286	0.00131831	0.00128446	0.0143836	0.0136229
chr17	28326693	28326793	16175262	0	+	0.37	(0.36,0.39]	chr17	1304981	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	11	68	2	2.13285	2.8382	3.54355	0.00240374	1.35556e-6	0.0226192	5.16469e-5
chr6	26599043	26599143	7102922	0	+	0.28	[0,0.29]	chr6	543235	5	UTR3	UTR3:EXON_MRNA	ABT1	ENSG00000146109.5	ENST00000274849.3	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.20534	2.8381100000000004	3.47088	0.0117033	0.0015572	0.0685676	0.0165415
chr8	140531143	140531243	10132154	0	-	0.29	[0,0.29]	chr8	760954	111	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.20534	2.8381100000000004	3.47088	0.0117033	0.0015572	0.0685676	0.0165415
chr22	21450283	21450381	18302367	0	+	0.540816	(0.53,0.59]	chr22	1554129	37	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	11	98	2	2.67019	2.838095	3.006	2.34155e-4	1.2671e-5	0.00385898	3.34022e-4
chr12	1786072	1786168	12689011	0	+	0.625	(0.59,1]	chr12	984486	1	UTR3	UTR3:EXON_MRNA	ADIPOR2	ENSG00000006831.10	ENST00000357103.5	protein_coding	protein_coding	protein_coding	protein_coding	2	38	2	2.42639	2.8380549999999998	3.24972	0.0409084	0.00314037	0.163285	0.0264943
chr11	86031488	86031588	12526479	0	-	0.37	(0.36,0.39]	chr11	972278	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	49	2	2.21698	2.8379399999999997	3.4589	0.00116446	9.87237e-5	0.0126557	0.00194682
chr5	133959493	133959580	6843165	0	-	0.310345	(0.29,0.33]	chr5	523549	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.59395	2.83782	3.08169	0.0249836	0.00114594	0.114013	0.0130468
chr18	36795605	36795705	17079089	0	-	0.34	(0.33,0.36]	chr18	1403215	16	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.6995	2.83778	2.97606	0.017838	0.00871774	0.0934844	0.0558165
chr5	111128839	111128937	6144731	0	+	0.336735	(0.33,0.36]	chr5	480259	21	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.6995	2.83778	2.97606	0.017838	0.00871774	0.0934844	0.0558165
chr5	122818954	122819023	6187836	0	+	0.347826	(0.33,0.36]	chr5	482545	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNX2	ENSG00000205302.7	ENST00000379516.7:ENST00000514949.1:ENST00000510372.5:ENST00000506847.5:ENST00000514030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	15	2	2.6995	2.83778	2.97606	0.017838	0.00871774	0.0934844	0.0558165
chr6	34279678	34279777	7672398	0	-	0.40404	(0.39,0.42]	chr6	588026	1	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.11399	2.8374800000000002	3.56097	0.014455	6.12149e-4	0.0787564	0.00818575
chr2	43224703	43224799	2618851	0	-	0.791667	(0.59,1]	chr2	235740	4	CDS	CDS:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	3	50	2	2.11074	2.8373299999999997	3.56392	0.0305	8.86707e-4	0.130204	0.0101815
chr11	63629021	63629120	12414809	0	-	0.383838	(0.36,0.39]	chr11	962192	51	UTR3	UTR3:EXON_MRNA	ATL3	ENSG00000184743.13	ENST00000398868.8	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.1437	2.83732	3.53094	0.0340515	0.0305588	0.141465	0.130016
chr12	104321240	104321316	13058855	0	+	0.381579	(0.36,0.39]	chr12	1017665	3	CDS	CDS:EXON_MRNA:INTRON	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000529751.1:ENST00000524698.5:ENST00000527688.5:ENST00000526950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.1437	2.83732	3.53094	0.0340515	0.0305588	0.141465	0.130016
chr2	144505033	144505133	2930428	0	-	0.38	(0.36,0.39]	chr2	259716	4	SS3_PROX	SS3_PROX:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000419938.5:ENST00000409487.7:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000427902.5:ENST00000637267.2:ENST00000392861.6:ENST00000431672.4:ENST00000409211.5:ENST00000465308.5:ENST00000434448.5:ENST00000472146.5:ENST00000461784.3:ENST00000476394.5:ENST00000479735.1:ENST00000453352.5:ENST00000435831.5:ENST00000444559.5:ENST00000630572.2:ENST00000484313.3:ENST00000637591.1:ENST00000629955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	2.1437	2.83732	3.53094	0.0340515	0.0305588	0.141465	0.130016
chr7	1542647	1542746	8095017	0	+	0.383838	(0.36,0.39]	chr7	618736	24	UTR3	UTR3:EXON_MRNA	MAFK	ENSG00000198517.10	ENST00000343242.9:ENST00000403150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.1437	2.83732	3.53094	0.0340515	0.0305588	0.141465	0.130016
chr12	113390175	113390272	13101756	0	+	0.515464	(0.49,0.53]	chr12	1022448	17	UTR3	UTR3:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000280800.5	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	2.436	2.837275	3.23855	5.17978e-4	5.12488e-5	0.00723206	0.00104999
chrX	134428395	134428494	18863562	0	+	0.333333	(0.33,0.36]	chrX	1607356	32	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.7655	2.83711	2.90872	0.0175892	4.00944e-4	0.0918323	0.00548902
chr1	156743160	156743256	1316760	0	-	0.5	(0.49,0.53]	chr1	133965	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5:ENST00000482651.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	62	2	2.37584	2.837045	3.29825	4.48936e-4	0.00019429700000000001	0.00604033	0.00332542
chr5	140243600	140243694	6253242	0	+	0.255319	[0,0.29]	chr5	487354	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.40395	2.83678	3.26961	0.0210081	0.00229774	0.101116	0.0210664
chr1	19121270	19121352	876098	0	-	0.634146	(0.59,1]	chr1	90060	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.61074	2.83666	3.06258	0.025486	0.00616167	0.117089	0.0438642
chr12	54403701	54403779	13343809	0	-	0.615385	(0.59,1]	chr12	1049792	2	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000550141.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	37	2	2.61074	2.83666	3.06258	0.025486	0.00616167	0.117089	0.0438642
chr17	83026675	83026774	16715076	0	-	0.646465	(0.59,1]	chr17	1378983	118	INTRON	INTRON	B3GNTL1	ENSG00000175711.8	ENST00000320865.3:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	37	2	2.61074	2.83666	3.06258	0.025486	0.00616167	0.117089	0.0438642
chr5	72897055	72897151	6029265	0	+	0.40625	(0.39,0.42]	chr5	472782	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.34349	2.836645	3.3298	0.0169272	0.00165391	0.0890655	0.0163614
chr6	26598844	26598944	7102920	0	+	0.42	(0.39,0.42]	chr6	543235	3	UTR3	UTR3:EXON_MRNA	ABT1	ENSG00000146109.5	ENST00000274849.3	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.34349	2.836645	3.3298	0.0169272	0.00165391	0.0890655	0.0163614
chr6	27867236	27867332	7649634	0	-	0.59375	(0.59,1]	chr6	582822	4	CDS	CDS:EXON_MRNA	H1-5	ENSG00000184357.5	ENST00000331442.5	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.68392	2.83652	2.9891200000000002	0.0202468	0.00823979	0.0984041	0.0540283
chr17	44854917	44855004	16559951	0	-	0.505747	(0.49,0.53]	chr17	1359712	1	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000588340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	1.99044	2.83645	3.68246	0.0435903	3.06313e-4	0.170594	0.00442973
chr9	7478025	7478123	10545930	0	-	0.591837	(0.59,1]	chr9	799719	11	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	52	2	2.69477	2.836395	2.97802	0.020208	0.00133365	0.0978331	0.0139317
chr16	28842786	28842880	15907753	0	-	0.553191	(0.53,0.59]	chr16	1273881	5	UTR3	UTR3:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000569217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.37399	2.83637	3.29875	0.0126178	0.00191422	0.0717599	0.018324
chr17	35657694	35657791	16206828	0	+	0.536082	(0.53,0.59]	chr17	1309095	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000587805.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	2.37399	2.83637	3.29875	0.0126178	0.00191422	0.0717599	0.018324
chr17	32369294	32369374	16200641	0	+	0.525	(0.49,0.53]	chr17	1308193	1	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	61	2	2.39164	2.83631	3.28098	0.00116644	3.89192e-5	0.0131312	8.42006e-4
chr13	37024113	37024193	13969292	0	-	0.4	(0.39,0.42]	chr13	1096090	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SUPT20H	ENSG00000102710.20	ENST00000350612.11:ENST00000490716.5:ENST00000484078.5:ENST00000360252.8:ENST00000495071.6:ENST00000475892.5:ENST00000356185.7:ENST00000469488.6:ENST00000542180.5:ENST00000464744.5:ENST00000466563.6:ENST00000493537.5:ENST00000476539.5:ENST00000490602.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.784	2.8361799999999997	2.88836	0.0102432	0.00261393	0.062872	0.0230705
chr2	47478271	47478353	1785271	0	+	0.390244	(0.39,0.42]	chr2	172523	1	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.784	2.8361799999999997	2.88836	0.0102432	0.00261393	0.062872	0.0230705
chr2	201078882	201078982	2310170	0	+	0.4	(0.39,0.42]	chr2	209046	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFB3	ENSG00000119013.10	ENST00000450023.6:ENST00000237889.9:ENST00000433898.5:ENST00000684175.1:ENST00000682325.1:ENST00000454214.1:ENST00000684420.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.784	2.8361799999999997	2.88836	0.0102432	0.00261393	0.062872	0.0230705
chr6	131674221	131674281	7403045	0	+	0.4	(0.39,0.42]	chr6	567389	2	CDS	CDS:UTR3:EXON_MRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.784	2.8361799999999997	2.88836	0.0102432	0.00261393	0.062872	0.0230705
chrX	120158750	120158829	18843886	0	+	0.556962	(0.53,0.59]	chrX	1605733	1	CDS_START	CDS_START:CDS:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.36244	2.835935	3.30943	0.0131162	0.0018255	0.073569	0.0183913
chr5	141516657	141516753	6875039	0	-	0.583333	(0.53,0.59]	chr5	526351	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1:ENST00000518047.5:ENST00000468119.3:ENST00000643312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	2.54844	2.8359199999999998	3.1234	0.00663226	0.00390623	0.0461575	0.0322851
chr7	6402346	6402446	8114061	0	+	0.55	(0.53,0.59]	chr7	620429	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5:ENST00000497741.5:ENST00000473564.1:ENST00000495499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	30	2	2.54844	2.8359199999999998	3.1234	0.00663226	0.00390623	0.0461575	0.0322851
chr10	74129906	74129992	11575900	0	-	0.418605	(0.39,0.42]	chr10	881691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1:ENST00000480373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	2.5823	2.835895	3.08949	0.00246531	1.31388e-4	0.0230262	0.00226623
chr16	67868339	67868411	15712208	0	+	0.513889	(0.49,0.53]	chr16	1250692	1	CDS	CDS:EXON_MRNA	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	25	2	1.7294	2.835585	3.94177	0.0216372	0.0104929	0.103121	0.063428
chr19	40629450	40629550	17330541	0	+	0.71	(0.59,1]	chr19	1436077	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000595118.5:ENST00000318809.11:ENST00000599225.1:ENST00000598166.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	67	2	2.00381	2.835425	3.66704	0.0121278	6.16458e-4	0.0701019	0.00822794
chr1	11966986	11967038	45423	0	+	0.596154	(0.59,1]	chr1	5794	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	59	2	2.38157	2.83509	3.28861	0.00534794	0.0028753	0.0392783	0.0256141
chr17	82083350	82083425	16710722	0	-	0.533333	(0.53,0.59]	chr17	1378168	3	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	2.37402	2.83495	3.29588	0.00230837	1.96478e-4	0.0211205	0.00335505
chr5	10258460	10258535	5874601	0	+	0.36	(0.33,0.36]	chr5	461870	2	CDS	CDS:UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1:ENST00000514674.5:ENST00000509846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	54	2	2.34361	2.834825	3.32604	0.00235002	7.44914e-6	0.0222173	2.17025e-4
chr6	143165081	143165132	7445937	0	+	0.372549	(0.36,0.39]	chr6	569862	1	CDS	CDS:EXON_MRNA	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.20444	2.834705	3.46497	0.0237257	0.00105709	0.109365	0.0123035
chr1	201154404	201154501	1446692	0	-	0.670103	(0.59,1]	chr1	145217	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000485839.6:ENST00000497582.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	2.61822	2.834685	3.05115	0.00201173	0.00103208	0.019022	0.0121443
chrX	24071642	24071727	18616626	0	+	0.423529	(0.42,0.455]	chrX	1589830	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000460032.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	61	2	2.32213	2.8345450000000003	3.34696	0.00108241	2.50958e-5	0.0124971	5.82876e-4
chr11	842413	842508	12228252	0	-	0.589474	(0.53,0.59]	chr11	943914	1	CDS_START	CDS_START:CDS:EXON_MRNA	POLR2L	ENSG00000177700.6	ENST00000534030.1:ENST00000322028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	2.55633	2.83454	3.11275	0.00407571	4.55091e-4	0.032143	0.006455
chr15	72199205	72199294	15367985	0	-	0.595506	(0.59,1]	chr15	1214121	3	UTR3	UTR3:EXON_MRNA	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000565143.1:ENST00000567118.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	51	2	2.77418	2.83446	2.89474	0.0160729	0.00190546	0.0860154	0.018313
chr19	618487	618586	17416209	0	-	0.575758	(0.53,0.59]	chr19	1451721	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLRMT	ENSG00000099821.14	ENST00000588649.7:ENST00000587057.5:ENST00000590336.2:ENST00000589961.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.65894	2.8344199999999997	3.0099	0.0193255	0.00600486	0.0943643	0.042887
chr5	71657442	71657540	6026818	0	+	0.581633	(0.53,0.59]	chr5	472497	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.65894	2.8344199999999997	3.0099	0.0193255	0.00600486	0.0943643	0.042887
chr9	133349593	133349611	10503284	0	+	0.555556	(0.53,0.59]	chr9	794226	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000496554.5:ENST00000468019.5:ENST00000426651.1:ENST00000315731.4:ENST00000485706.5:ENST00000489392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	23	2	2.65894	2.8344199999999997	3.0099	0.0193255	0.00600486	0.0943643	0.042887
chr11	61812569	61812668	12406047	0	-	0.585859	(0.53,0.59]	chr11	960631	2	CDS	CDS:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5:ENST00000491310.5:ENST00000544696.5:ENST00000466716.5:ENST00000544309.5:ENST00000539419.5:ENST00000448607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	84	2	1.72707	2.83441	3.94175	0.015378	3.37749e-7	0.0833184	1.77431e-5
chr19	32597384	32597479	17536859	0	-	0.463158	(0.455,0.49]	chr19	1471456	5	UTR3	UTR3:EXON_MRNA	ANKRD27	ENSG00000105186.16	ENST00000306065.9	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	2.33278	2.834365	3.33595	0.00314029	2.70224e-5	0.0276877	6.22285e-4
chr2	132254983	132255082	2878622	0	-	0.484848	(0.455,0.49]	chr2	257829	18	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	189	1442	2	2.3551	2.834175	3.31325	1.52702e-6	5.9997e-11	6.28357e-5	8.64239e-9
chr4	75656900	75657000	5472998	0	-	0.33	(0.29,0.33]	chr4	438404	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000507947.5:ENST00000676493.1:ENST00000676761.1:ENST00000677278.1:ENST00000510902.2:ENST00000678958.1:ENST00000503660.5:ENST00000678670.1:ENST00000677733.1:ENST00000676926.1:ENST00000677597.1:ENST00000502654.5:ENST00000509100.6:ENST00000515457.6:ENST00000507745.5:ENST00000513927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	2.67277	2.834015	2.99526	0.0255386	2.55279e-4	0.117089	0.00383691
chr12	24836521	24836596	13255927	0	-	0.52	(0.49,0.53]	chr12	1038868	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	5	46	2	2.38683	2.8339049999999997	3.28098	0.012654	3.89192e-5	0.0718207	8.42006e-4
chr17	68530647	68530747	16337420	0	+	0.46	(0.455,0.49]	chr17	1325397	3	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000586397.5:ENST00000588188.6:ENST00000592800.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	62	2	2.61558	2.83385	3.05212	0.00184897	1.87787e-5	0.0185736	4.60859e-4
chr5	91370508	91370607	6695314	0	-	0.393939	(0.39,0.42]	chr5	516141	20	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	7	51	2	2.5823	2.833695	3.08509	0.00246531	4.0097e-5	0.0230262	8.62567e-4
chr9	33034215	33034272	10233685	0	+	0.473684	(0.455,0.49]	chr9	769264	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJA1	ENSG00000086061.16	ENST00000330899.5:ENST00000495015.5:ENST00000465677.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	2.50904	2.83358	3.15812	0.0310515	8.56318e-5	0.131262	0.00160672
chr21	8210492	8210591	18041122	0	+	0.525253	(0.49,0.53]	chr21	1530812	12	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	3717	25933	2	2.61113	2.8335350000000004	3.05594	4.77746e-8	3.06355e-10	2.96262e-6	4.06798e-8
chr5	115614908	115615008	6776995	0	-	0.24	[0,0.29]	chr5	519913	18	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	33	2	2.60784	2.8334599999999996	3.05908	0.00209281	1.30246e-4	0.0196502	0.00243336
chr2	96185153	96185251	2789812	0	-	0.469388	(0.455,0.49]	chr2	248609	4	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.35515	2.83343	3.31171	0.0140117	1.87327e-4	0.0767536	0.00325006
chr14	22957029	22957095	14528124	0	-	0.712121	(0.59,1]	chr14	1138246	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	HAUS4:RP11-298I3.5:MIR4707	ENSG00000092036.19:ENSG00000259132.1:ENSG00000284118.1	ENST00000206474.11:ENST00000490506.5:ENST00000541587.6:ENST00000347758.6:ENST00000342454.12:ENST00000555367.5:ENST00000555074.1:ENST00000555986.5:ENST00000555040.5:ENST00000554349.5:ENST00000553794.5:ENST00000554651.5:ENST00000554516.5:ENST00000557591.5:ENST00000554406.1:ENST00000579686.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	5	78	2	2.53543	2.833415	3.1314	0.00300931	6.69043e-4	0.026728	0.00820018
chr15	64974601	64974674	15342475	0	-	0.452055	(0.42,0.455]	chr15	1211264	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	38	2	2.42938	2.833225	3.23707	0.0045028	2.71467e-4	0.0349711	0.00404536
chr1	35641341	35641432	938724	0	-	0.571429	(0.53,0.59]	chr1	98726	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	2.72408	2.833195	2.94231	3.72688e-4	3.05722e-4	0.00559101	0.00442973
chr1	183627233	183627332	1404930	0	-	0.252525	[0,0.29]	chr1	142115	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	33	2	2.69308	2.833145	2.97321	0.00137675	2.24899e-4	0.0142677	0.00374156
chr6	28904567	28904665	7652699	0	-	0.581633	(0.53,0.59]	chr6	583186	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5:ENST00000467742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	47	2	2.38191	2.833065	3.28422	0.00477439	2.10061e-4	0.0368489	0.00327655
chr20	37236644	37236709	17777949	0	+	0.615385	(0.59,1]	chr20	1502084	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11:ENST00000437329.5:ENST00000456400.1:ENST00000470352.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.81459	2.83291	2.85123	0.00278977	0.0022846	0.0249234	0.0209856
chr1	112701460	112701549	1231805	0	-	0.550562	(0.53,0.59]	chr1	120329	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000473074.1:ENST00000484280.6:ENST00000369632.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	2.36991	2.8328949999999997	3.29588	0.00501452	1.96478e-4	0.0370872	0.00335505
chr5	171406585	171406676	6384384	0	+	0.417582	(0.39,0.42]	chr5	495834	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.149	2.83268	3.51636	0.0149155	6.99837e-4	0.0812412	0.00846751
chr14	102039011	102039082	14495776	0	+	0.478873	(0.455,0.49]	chr14	1133219	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000555800.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.52734	2.832605	3.13787	0.00792433	4.66183e-4	0.0523592	0.00616585
chr18	57606615	57606683	17137520	0	-	0.485294	(0.455,0.49]	chr18	1407157	1	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000589001.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.52734	2.832605	3.13787	0.00792433	4.66183e-4	0.0523592	0.00616585
chr10	72275470	72275564	11111179	0	+	0.585106	(0.53,0.59]	chr10	845359	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	178	2	2.81176	2.83254	2.85332	1.61199e-5	1.94926e-6	4.49655e-4	7.00877e-5
chr10	22320603	22320702	10962106	0	+	0.828283	(0.59,1]	chr10	834267	4	INTRON	INTRON	COMMD3-BMI1	ENSG00000269897.5	ENST00000475460.6:ENST00000602390.5:ENST00000489125.2:ENST00000463409.6:ENST00000417470.1:ENST00000602395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	1.67735	2.83243	3.98751	0.0534288	0.0301044	0.184995	0.129773
chr16	69693043	69693142	15725285	0	+	0.424242	(0.42,0.455]	chr16	1252127	14	CDS	CDS:UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.03532	2.83194	3.62856	0.040947	4.02604e-4	0.163285	0.00549837
chr6	143442373	143442472	8005145	0	-	0.444444	(0.42,0.455]	chr6	611729	5	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.03532	2.83194	3.62856	0.040947	4.02604e-4	0.163285	0.00549837
chr17	5433668	5433767	16421516	0	-	0.434343	(0.42,0.455]	chr17	1338179	1	CDS	CDS:EXON_MRNA	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000574444.5:ENST00000570805.1:ENST00000573204.1:ENST00000573421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	84	2	2.76282	2.8319	2.90098	1.4418e-4	2.14233e-5	0.00264215	5.12077e-4
chr1	148170264	148170363	457130	0	+	0.454545	(0.42,0.455]	chr1	45544	58	INTRON	INTRON	LINC02805	ENSG00000232265.8	ENST00000665006.1:ENST00000668803.1:ENST00000656778.1:ENST00000653344.1:ENST00000595367.6:ENST00000597931.6:ENST00000659506.1:ENST00000599864.6:ENST00000663701.1:ENST00000663831.1:ENST00000663602.1:ENST00000618809.1:ENST00000595668.5	lncRNA	lncRNA	lncRNA	lncRNA	3	25	2	2.66697	2.8318149999999997	2.99666	0.0190326	0.00104775	0.0958835	0.0123035
chr6	159780442	159780504	8049073	0	-	0.403226	(0.39,0.42]	chr6	615261	1	CDS	CDS:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.49701	2.831565	3.16612	0.0339607	4.03393e-4	0.141431	0.00550292
chr17	82085481	82085578	16710754	0	-	0.680412	(0.59,1]	chr17	1378191	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000579410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	108	2	2.01707	2.8315599999999996	3.64605	0.00551697	4.87268e-5	0.0415005	0.00100455
chr12	120697144	120697242	13117477	0	+	0.510204	(0.49,0.53]	chr12	1024005	7	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	1.92759	2.831265	3.73494	0.0267071	0.0189345	0.118504	0.0934721
chr10	123165167	123165267	11299076	0	+	0.41	(0.39,0.42]	chr10	861591	2	UTR3	UTR3:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	21	132	2	2.79039	2.831195	2.872	6.07557e-6	3.52543e-6	1.99765e-4	1.15154e-4
chr17	75181134	75181188	16682629	0	-	0.462963	(0.455,0.49]	chr17	1372992	2	CDS	CDS:UTR5:EXON_MRNA	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.66563	2.8311650000000004	2.9967	0.00650423	0.0043075	0.0454205	0.0334284
chr6	149743637	149743715	8019057	0	-	0.397436	(0.39,0.42]	chr6	612750	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6:ENST00000543637.1:ENST00000463048.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	2.46573	2.830805	3.19588	0.00349672	0.00321212	0.0288123	0.0280721
chr3	96349751	96349850	3612085	0	+	0.494949	(0.49,0.53]	chr3	310547	3	EXON_PSEUDO	EXON_PSEUDO	HNRNPKP4	ENSG00000243547.1	ENST00000485383.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	27	2	2.13501	2.8306899999999997	3.52637	0.0287874	6.68602e-4	0.128869	0.00820018
chr1	166853879	166853979	519997	0	+	0.35	(0.33,0.36]	chr1	55860	36	UTR3	UTR3:EXON_MRNA	POGK	ENSG00000143157.12	ENST00000367876.9:ENST00000367875.1	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.62574	2.83063	3.03552	0.00176861	0.0012034	0.0172426	0.0134762
chr22	16807816	16807894	18421155	0	-	0.358974	(0.33,0.36]	chr22	1569149	2	CDS	CDS:EXON_MRNA	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.62574	2.83063	3.03552	0.00176861	0.0012034	0.0172426	0.0134762
chr12	49040581	49040676	13323398	0	-	0.621053	(0.59,1]	chr12	1045492	10	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.96265	2.830625	3.6986	0.0238491	4.89626e-4	0.112466	0.00639399
chr22	20953454	20953551	18300218	0	+	0.278351	[0,0.29]	chr22	1553647	38	UTR3	UTR3:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	122	2	1.99968	2.8306	3.66152	8.88091e-4	3.59551e-9	0.0108219	3.19904e-7
chr2	173956037	173956134	3020164	0	-	0.43299	(0.42,0.455]	chr2	267378	13	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	52	2	2.28157	2.8305949999999998	3.37962	0.0012159	1.2947e-4	0.0130129	0.00242147
chr11	5341078	5341173	12241503	0	-	0.315789	(0.29,0.33]	chr11	946157	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	60	2	2.14085	2.8305499999999997	3.52025	0.0117968	4.75597e-7	0.0686664	2.1148e-5
chr17	49828294	49828393	16260202	0	+	0.383838	(0.36,0.39]	chr17	1318079	9	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000424009.6:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.48922	2.830335	3.17145	0.0110399	3.99865e-4	0.0652374	0.0054764
chr14	99511172	99511269	14481785	0	+	0.42268	(0.42,0.455]	chr14	1131385	5	UTR3	UTR3:EXON_MRNA:INTRON	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.19674	2.830115	3.46349	0.0254904	9.0025e-4	0.117089	0.0102618
chr15	40393967	40394060	14881322	0	+	0.44086	(0.42,0.455]	chr15	1168511	5	UTR3	UTR3:EXON_MRNA	KNSTRN	ENSG00000128944.13	ENST00000249776.12:ENST00000560981.5:ENST00000416151.6:ENST00000448395.6:ENST00000608100.5:ENST00000561169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.19674	2.830115	3.46349	0.0254904	9.0025e-4	0.117089	0.0102618
chr17	35724183	35724280	16207504	0	+	0.453608	(0.42,0.455]	chr17	1309154	6	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.19674	2.830115	3.46349	0.0254904	9.0025e-4	0.117089	0.0102618
chr16	68122080	68122175	15714213	0	+	0.368421	(0.36,0.39]	chr16	1250981	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-67A1.2:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	15	89	2	2.77065	2.83006	2.88947	3.63143e-5	1.24944e-5	8.77394e-4	3.30658e-4
chrX	53379506	53379605	19076617	0	-	0.393939	(0.39,0.42]	chrX	1622486	55	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	2.48357	2.829995	3.17642	0.00171404	7.53971e-6	0.017714	2.18133e-4
chr9	131197715	131197815	10496364	0	+	0.5	(0.49,0.53]	chr9	793351	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000525384.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	104	2	2.70139	2.82993	2.95847	5.54587e-5	8.4662e-6	0.00112531	2.62446e-4
chr1	43384845	43384943	968608	0	-	0.459184	(0.455,0.49]	chr1	102093	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED8	ENSG00000159479.17	ENST00000290663.10:ENST00000372457.9:ENST00000372455.4	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.69053	2.82989	2.96925	0.0182983	0.00698725	0.0925808	0.0473262
chr11	108147290	108147390	12125136	0	+	0.47	(0.455,0.49]	chr11	933513	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACAT1	ENSG00000075239.14	ENST00000672284.1:ENST00000672580.1:ENST00000265838.9:ENST00000672367.1:ENST00000672907.1:ENST00000673531.1:ENST00000672031.1:ENST00000672354.1:ENST00000671707.1:ENST00000673000.1:ENST00000533597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.69053	2.82989	2.96925	0.0182983	0.00698725	0.0925808	0.0473262
chr17	35007569	35007667	16204859	0	+	0.469388	(0.455,0.49]	chr17	1308772	32	UTR3	UTR3:EXON_MRNA	LIG3	ENSG00000005156.12	ENST00000378526.9	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.69053	2.82989	2.96925	0.0182983	0.00698725	0.0925808	0.0473262
chr20	41116277	41116334	17790094	0	+	0.45614	(0.455,0.49]	chr20	1503515	1	CDS	CDS:UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.69053	2.82989	2.96925	0.0182983	0.00698725	0.0925808	0.0473262
chr9	33917731	33917829	10237982	0	+	0.459184	(0.455,0.49]	chr9	769835	6	UTR3	UTR3:EXON_MRNA	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.69053	2.82989	2.96925	0.0182983	0.00698725	0.0925808	0.0473262
chr10	3778258	3778357	11348536	0	-	0.444444	(0.42,0.455]	chr10	865180	24	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	2.36247	2.829835	3.2972	0.0462889	1.93851e-4	0.176878	0.00307904
chr5	73502487	73502544	6032181	0	+	0.473684	(0.455,0.49]	chr5	473082	1	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000507081.6:ENST00000676856.1:ENST00000514505.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	50	2	2.52734	2.8298050000000003	3.13227	0.00792433	2.90346e-5	0.0523592	6.60686e-4
chr6	30892295	30892377	7112927	0	+	0.658537	(0.59,1]	chr6	545179	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DDR1	ENSG00000204580.14	ENST00000460944.6:ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000376568.8:ENST00000452441.5:ENST00000482873.6:ENST00000508312.5:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000508472.5:ENST00000417521.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.24397	2.8296650000000003	3.41536	0.0206682	0.00164655	0.0997234	0.0163443
chr4	144111232	144111329	5696549	0	-	0.319588	(0.29,0.33]	chr4	451524	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000510771.1:ENST00000650526.1:ENST00000324022.14	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	24	120	2	2.79562	2.82966	2.8637	1.12347e-5	1.33596e-6	3.33848e-4	5.12039e-5
chr1	1050426	1050508	2388	0	+	0.670732	(0.59,1]	chr1	557	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	2.17889	2.8295649999999997	3.4802399999999998	0.025085	7.412e-6	0.116848	2.16033e-4
chr1	150219899	150219997	1288432	0	-	0.377551	(0.36,0.39]	chr1	128126	16	UTR3	UTR3:EXON_MRNA	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4	protein_coding	protein_coding	protein_coding	protein_coding	12	64	2	1.98553	2.829545	3.67356	0.00275785	2.37283e-6	0.0247437	8.2933e-5
chr8	82266321	82266421	9432943	0	+	0.39	(0.36,0.39]	chr8	719376	1922	INTRON	INTRON	CTD-2272D18.1	ENSG00000254394.2	ENST00000663058.1:ENST00000659043.1	lncRNA	lncRNA	lncRNA	lncRNA	25	187	2	2.31142	2.829515	3.34761	5.96933e-4	4.25233e-9	0.00808161	3.70519e-7
chr19	41307223	41307317	17334340	0	+	0.404255	(0.39,0.42]	chr19	1436801	8	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000392006.8	protein_coding	protein_coding	protein_coding	protein_coding	15	95	2	2.71429	2.82941	2.94453	2.10841e-5	1.93036e-5	5.6023e-4	4.71485e-4
chr2	74165217	74165284	2740325	0	-	0.343284	(0.33,0.36]	chr2	243893	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	26	2	2.63456	2.82925	3.02394	0.00707461	8.89743e-4	0.0478528	0.0102057
chr3	73067013	73067112	3556718	0	+	0.282828	[0,0.29]	chr3	309059	14	UTR3	UTR3:EXON_MRNA	PPP4R2	ENSG00000163605.15	ENST00000356692.10	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.69308	2.829205	2.96533	0.0024246	0.00137675	0.0227938	0.0142677
chr5	139319417	139319501	6248993	0	+	0.380952	(0.36,0.39]	chr5	486993	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	28	2	2.63521	2.82918	3.02315	0.00633242	8.65481e-4	0.0446708	0.0100741
chr1	23081509	23081573	97770	0	+	0.5	(0.49,0.53]	chr1	11302	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	1.9035	2.82905	3.7546	0.0295204	2.09468e-4	0.129773	0.00327655
chr15	42531721	42531816	14892401	0	+	0.4	(0.39,0.42]	chr15	1170513	3	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding	10	56	2	2.12927	2.82904	3.52881	0.0012893	5.61812e-5	0.0136718	0.00124771
chr6	108211406	108211499	7883749	0	-	0.354839	(0.33,0.36]	chr6	603535	3	UTR3	UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.28792	2.828755	3.36959	0.0239159	0.0014168	0.112531	0.0145694
chr12	110346470	110346562	13085914	0	+	0.26087	[0,0.29]	chr12	1020554	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	80	2	2.71796	2.82874	2.93952	7.61178e-5	3.3504e-6	0.0015974	1.10691e-4
chr4	73085347	73085446	5466063	0	-	0.414141	(0.39,0.42]	chr4	437748	2	CDS	CDS:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	9	55	2	2.42665	2.8286100000000003	3.23057	3.34829e-4	3.33956e-4	0.00509483	0.00472923
chr14	102016348	102016418	14495508	0	+	0.514286	(0.49,0.53]	chr14	1133118	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000645114.2:ENST00000643764.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.78962	2.82836	2.8671	0.0129044	0.0100489	0.0725185	0.0623334
chr7	103308968	103309031	8441093	0	+	0.507937	(0.49,0.53]	chr7	645028	1	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.78962	2.82836	2.8671	0.0129044	0.0100489	0.0725185	0.0623334
chr12	55757430	55757511	13347185	0	-	0.382716	(0.36,0.39]	chr12	1050378	3	UTR3	UTR3:EXON_MRNA	SARNP:RP11-762I7.5	ENSG00000205323.9:ENSG00000257390.5	ENST00000546604.5:ENST00000552884.5:ENST00000336133.8:ENST00000552946.1:ENST00000546837.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.76749	2.828335	2.88918	0.00287858	0.00212816	0.0247002	0.0206577
chr5	41918289	41918388	5952037	0	+	0.373737	(0.36,0.39]	chr5	466508	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.76749	2.828335	2.88918	0.00287858	0.00212816	0.0247002	0.0206577
chr9	112219595	112219694	10802878	0	-	0.292929	(0.29,0.33]	chr9	818409	20	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	10	51	2	2.6886	2.8282800000000003	2.96796	1.79094e-4	1.17904e-4	0.00312723	0.00206655
chr16	24215211	24215310	15599239	0	+	0.464646	(0.455,0.49]	chr16	1236920	5	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	5	43	2	2.40664	2.8282049999999996	3.24977	0.0123662	4.77546e-5	0.0705839	9.90649e-4
chr12	15895427	15895496	12751467	0	+	0.347826	(0.33,0.36]	chr12	991239	2	CDS	CDS:UTR3:EXON_MRNA	STRAP	ENSG00000023734.11	ENST00000419869.7:ENST00000541731.1:ENST00000025399.10:ENST00000536737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.51887	2.828175	3.13748	0.0358636	0.00379835	0.147298	0.0307587
chr14	52683787	52683847	14630489	0	-	0.35	(0.33,0.36]	chr14	1146039	1	CDS	CDS:EXON_MRNA:INTRON	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000554019.5:ENST00000556039.5:ENST00000629528.2:ENST00000554251.5:ENST00000556223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.51887	2.828175	3.13748	0.0358636	0.00379835	0.147298	0.0307587
chr16	15866387	15866482	15867189	0	-	0.357895	(0.33,0.36]	chr16	1268253	8	UTR3	UTR3:EXON_MRNA	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.51887	2.828175	3.13748	0.0358636	0.00379835	0.147298	0.0307587
chr2	47386775	47386857	1784492	0	+	0.353659	(0.33,0.36]	chr2	172434	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EPCAM	ENSG00000119888.11	ENST00000405271.5:ENST00000456133.5:ENST00000263735.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.51887	2.828175	3.13748	0.0358636	0.00379835	0.147298	0.0307587
chr1	155319793	155319860	483673	0	+	0.522388	(0.49,0.53]	chr1	50798	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000447866.5:ENST00000368356.9:ENST00000467076.5:ENST00000356657.10:ENST00000612683.1:ENST00000492887.5:ENST00000492244.5:ENST00000490140.1:ENST00000489324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	34	2	2.78773	2.827915	2.8681	0.00257389	0.00175299	0.0235767	0.0171299
chr12	57721094	57721186	12904352	0	+	0.5	(0.49,0.53]	chr12	1005910	3	UTR3	UTR3:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.3044	2.827865	3.35133	0.00696379	0.00150139	0.0474632	0.0152367
chr2	121765466	121765565	2034654	0	+	0.343434	(0.33,0.36]	chr2	192257	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSN	ENSG00000211460.12	ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000490104.5:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	27	2	2.18663	2.827855	3.46908	0.00609632	0.00114872	0.043509	0.0130528
chr5	138568924	138568986	6862496	0	-	0.403226	(0.39,0.42]	chr5	525235	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	2.03292	2.827815	3.62271	0.00788976	2.66379e-5	0.0522564	6.1526e-4
chr1	37493814	37493908	946792	0	-	0.382979	(0.36,0.39]	chr1	99428	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	2.48922	2.827715	3.16621	0.0110399	8.32577e-5	0.0652374	0.00157156
chr10	5458074	5458172	10909080	0	+	0.367347	(0.36,0.39]	chr10	830430	12	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.48922	2.827715	3.16621	0.0110399	8.32577e-5	0.0652374	0.00157156
chr19	39979816	39979900	17327717	0	+	0.619048	(0.59,1]	chr19	1435389	1	CDS	CDS:EXON_MRNA	PSMC4	ENSG00000013275.8	ENST00000157812.7:ENST00000455878.2:ENST00000593455.5:ENST00000601697.5:ENST00000596386.1:ENST00000601194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	2.11894	2.8277099999999997	3.53648	0.0293157	0.00107706	0.128478	0.0124943
chr6	37331271	37331371	7137057	0	+	0.51	(0.49,0.53]	chr6	550025	2	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.78794	2.82752	2.8671	0.0100489	0.00251838	0.0623334	0.0226599
chr5	141318825	141318909	6874989	0	-	0.27381	[0,0.29]	chr5	526343	5	UTR3	UTR3:EXON_MRNA:INTRON	TAF7	ENSG00000178913.8	ENST00000624699.1:ENST00000313368.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.82443	2.8274150000000002	2.8304	0.0180803	0.0121878	0.0920398	0.0701019
chr17	28592575	28592673	16486149	0	-	0.469388	(0.455,0.49]	chr17	1347858	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000531839.5:ENST00000578479.1:ENST00000580567.6:ENST00000536674.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	2.19092	2.827405	3.46389	0.00318608	9.14164e-4	0.0267172	0.0110519
chr8	108236160	108236193	10002657	0	-	0.515152	(0.49,0.53]	chr8	754213	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000679009.1:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	188	2	2.53776	2.8274	3.11704	6.93798e-5	8.981e-8	0.00146973	5.08654e-6
chr6	28156886	28156985	7105820	0	+	0.40404	(0.39,0.42]	chr6	543601	30	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.09368	2.827325	3.56097	0.00324532	6.12149e-4	0.0271838	0.00818575
chr11	489399	489456	11757328	0	+	0.578947	(0.53,0.59]	chr11	898013	1	CDS	CDS:EXON_MRNA	PTDSS2	ENSG00000174915.12	ENST00000308020.6:ENST00000526878.5:ENST00000527325.1:ENST00000531411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.27113	2.8273	3.38347	0.0178853	0.00132446	0.0918323	0.0138834
chr4	1026025	1026122	4678991	0	+	0.556701	(0.53,0.59]	chr4	387668	8	UTR3	UTR3:EXON_MRNA	FGFRL1	ENSG00000127418.15	ENST00000398484.6:ENST00000510644.6:ENST00000264748.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.27113	2.8273	3.38347	0.0178853	0.00132446	0.0918323	0.0138834
chr16	69757095	69757189	15995188	0	-	0.521277	(0.49,0.53]	chr16	1284292	7	EXON_PSEUDO	EXON_PSEUDO	CTD-2033A16.2	ENSG00000260290.2	ENST00000566277.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	34	2	2.78723	2.827165	2.8671	0.0100489	7.16432e-4	0.0623334	0.00859467
chrX	101412375	101412471	18786562	0	+	0.5	(0.49,0.53]	chrX	1601436	4	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.78723	2.827165	2.8671	0.0100489	7.16432e-4	0.0623334	0.00859467
chr5	43289447	43289546	6560152	0	-	0.454545	(0.42,0.455]	chr5	508332	21	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	8	51	2	2.08565	2.8270799999999996	3.56851	0.00331964	3.9883e-5	0.0277324	9.51945e-4
chrX	47226811	47226909	18687042	0	+	0.571429	(0.53,0.59]	chrX	1593336	1	CDS	CDS:EXON_MRNA	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000523699.5:ENST00000523543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	32	2	2.65894	2.827025	2.99511	0.0193255	9.46531e-4	0.0943643	0.010681
chr1	25862991	25863084	904973	0	-	0.569892	(0.53,0.59]	chr1	94121	2	CDS	CDS:EXON_MRNA	PAQR7	ENSG00000182749.6	ENST00000675840.1:ENST00000374296.4	protein_coding	protein_coding	protein_coding	protein_coding	2	24	2	2.35511	2.82693	3.29875	0.0445399	0.00191422	0.172163	0.018324
chr3	195788419	195788518	4661151	0	-	0.555556	(0.53,0.59]	chr3	385270	98	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	24	2	2.35511	2.82693	3.29875	0.0445399	0.00191422	0.172163	0.018324
chr19	28606937	28607020	17280859	0	+	0.578313	(0.53,0.59]	chr19	1428106	4	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1:ENST00000651559.1	lncRNA	lncRNA	lncRNA	lncRNA	9	82	2	2.68432	2.8267800000000003	2.96924	0.00118971	1.63746e-5	0.0128045	4.55421e-4
chr11	46593827	46593926	12383054	0	-	0.555556	(0.53,0.59]	chr11	955900	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000528950.1:ENST00000531542.1:ENST00000526606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.0404	2.82667	3.61294	0.0362529	0.0310038	0.148525	0.130016
chr3	128483859	128483932	4441151	0	-	0.547945	(0.53,0.59]	chr3	368935	1	CDS	CDS:EXON_MRNA	GATA2	ENSG00000179348.12	ENST00000341105.7:ENST00000430265.6:ENST00000487848.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.0404	2.82667	3.61294	0.0362529	0.0310038	0.148525	0.130016
chr6	30589805	30589889	7111565	0	+	0.559524	(0.53,0.59]	chr6	544885	1	CDS	CDS:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1:ENST00000479542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.0404	2.82667	3.61294	0.0362529	0.0310038	0.148525	0.130016
chr17	63746114	63746210	16634660	0	-	0.333333	(0.33,0.36]	chr17	1367560	10	UTR3	UTR3:EXON_MRNA:INTRON	RP11-51F16.8:CCDC47	ENSG00000125695.12:ENSG00000108588.14	ENST00000580553.1:ENST00000225726.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	2.07736	2.8264750000000003	3.57559	0.0442037	0.0262108	0.172163	0.117079
chr7	74712590	74712688	8337753	0	+	0.357143	(0.33,0.36]	chr7	635372	11	INTRON	INTRON	GTF2I	ENSG00000263001.7	ENST00000650807.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	2.07736	2.8264750000000003	3.57559	0.0442037	0.0262108	0.172163	0.117079
chr10	69104707	69104805	11094171	0	+	0.295918	(0.29,0.33]	chr10	843406	7	UTR3	UTR3:EXON_MRNA	SRGN	ENSG00000122862.5	ENST00000242465.4	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.73178	2.8262150000000004	2.92065	0.0117842	0.00360855	0.0686664	0.0296421
chr3	196071395	196071446	4663377	0	-	0.490196	(0.49,0.53]	chr3	385625	1	CDS	CDS:UTR3:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	35	245	2	2.64133	2.82606	3.01079	1.77177e-6	3.81849e-7	6.47334e-5	1.97177e-5
chr16	70388456	70388546	15997964	0	-	0.555556	(0.53,0.59]	chr16	1284781	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8:ENST00000567822.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	31	2	2.0404	2.8258650000000003	3.61133	0.0362529	4.55298e-4	0.148525	0.00608573
chr16	20775978	20776049	15582787	0	+	0.549296	(0.53,0.59]	chr16	1234744	3	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.0289	2.82547	3.62204	0.0373899	4.3021e-4	0.146698	0.00620274
chr20	45416516	45416605	17801611	0	+	0.539326	(0.53,0.59]	chr20	1505088	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PIGT	ENSG00000124155.18	ENST00000279035.14:ENST00000638246.1:ENST00000543458.7:ENST00000638383.1:ENST00000638612.1:ENST00000640364.1:ENST00000639984.1:ENST00000638978.1:ENST00000638689.1:ENST00000640108.1:ENST00000640666.1:ENST00000640996.1:ENST00000372689.9:ENST00000638745.1:ENST00000638594.1:ENST00000279036.12:ENST00000640986.1:ENST00000638387.1:ENST00000640692.1:ENST00000638445.1:ENST00000639932.1:ENST00000640585.1:ENST00000638671.1:ENST00000640107.1:ENST00000640272.1:ENST00000638938.1:ENST00000455050.2:ENST00000640175.1:ENST00000639499.1:ENST00000638714.1:ENST00000638353.1:ENST00000638489.1:ENST00000640542.1:ENST00000639783.1:ENST00000638953.1:ENST00000640210.1:ENST00000639382.1:ENST00000638478.1:ENST00000639235.1:ENST00000639286.1:ENST00000640194.1:ENST00000432270.2:ENST00000545755.3:ENST00000639417.1:ENST00000640324.1:ENST00000639194.1:ENST00000639664.1:ENST00000638710.1:ENST00000639292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.7898	2.8254099999999998	2.86102	0.0128364	0.0017805	0.0719798	0.0172974
chr17	63583501	63583571	16317486	0	+	0.571429	(0.53,0.59]	chr17	1323657	1	CDS	CDS:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	59	2	2.03947	2.825245	3.61102	0.00610305	3.01487e-5	0.0439421	6.78876e-4
chr14	94051069	94051129	14775138	0	-	0.516667	(0.49,0.53]	chr14	1157265	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000553451.1:ENST00000553400.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	44	2	2.01464	2.82522	3.6358	0.0205094	2.45857e-5	0.0991175	5.74553e-4
chr1	52393532	52393622	1018903	0	-	0.433333	(0.42,0.455]	chr1	105620	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.57051	2.82518	3.07985	0.0265466	1.37948e-4	0.120071	0.00233981
chr5	62385965	62386065	5993803	0	+	0.48	(0.455,0.49]	chr5	469639	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-95I19.4:KIF2A	ENSG00000288643.1:ENSG00000068796.19	ENST00000509663.2:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000674752.1:ENST00000675534.1:ENST00000675387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.65352	2.82511	2.9967	0.00650423	0.00143499	0.0454205	0.0147046
chr4	169722600	169722697	5218217	0	+	0.329897	(0.29,0.33]	chr4	420942	27	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.02337	2.8251	3.62683	0.0217631	6.18968e-4	0.103469	0.00822794
chr7	103355693	103355793	8441581	0	+	0.52	(0.49,0.53]	chr7	645084	1	CDS	CDS:EXON_MRNA:INTRON	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000677281.1:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000460021.1:ENST00000678587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	39	2	1.9676	2.82503	3.68246	0.00876974	3.06313e-4	0.056115	0.00442973
chr17	39995235	39995295	16222560	0	+	0.5	(0.49,0.53]	chr17	1311747	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000485835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.49797	2.8250200000000003	3.15207	0.00843736	0.00347189	0.0546021	0.0286293
chr5	141573491	141573580	6875636	0	-	0.52809	(0.49,0.53]	chr5	526443	1	CDS	CDS:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.49797	2.8250200000000003	3.15207	0.00843736	0.00347189	0.0546021	0.0286293
chr1	149832684	149832784	464745	0	+	0.58	(0.53,0.59]	chr1	46789	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C14	ENSG00000270882.2	ENST00000578186.2:ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	202	2	2.46393	2.8248699999999998	3.18581	1.74288e-4	8.21791e-8	0.00283056	5.24924e-6
chr19	812139	812233	17189596	0	+	0.542553	(0.53,0.59]	chr19	1411055	15	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	55	2	2.79311	2.824865	2.85662	6.84253e-4	4.88685e-4	0.00836671	0.00686067
chr18	26171004	26171097	17046296	0	-	0.387097	(0.36,0.39]	chr18	1401280	4	EXON_PSEUDO	EXON_PSEUDO	DHFRP1	ENSG00000188985.6	ENST00000579682.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	16	2	2.62565	2.82481	3.02397	0.0219469	0.00674398	0.103959	0.0461258
chr2	99196594	99196693	1952306	0	+	0.383838	(0.36,0.39]	chr2	185459	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-111H13.1:MRPL30	ENSG00000241962.9:ENSG00000185414.20	ENST00000424491.5:ENST00000338148.8:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.62565	2.82481	3.02397	0.0219469	0.00674398	0.103959	0.0461258
chr5	141576813	141576871	6875673	0	-	0.362069	(0.36,0.39]	chr5	526459	2	CDS	CDS:UTR3:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5:ENST00000647330.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.62565	2.82481	3.02397	0.0219469	0.00674398	0.103959	0.0461258
chr11	3702720	3702806	12237999	0	-	0.534884	(0.53,0.59]	chr11	945555	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	2.73974	2.82476	2.90978	0.00857883	9.00802e-4	0.0552386	0.0102618
chr12	57720180	57720263	12904340	0	+	0.566265	(0.53,0.59]	chr12	1005902	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.73974	2.82476	2.90978	0.00857883	9.00802e-4	0.0552386	0.0102618
chr3	167687614	167687693	4564264	0	-	0.35443	(0.33,0.36]	chr3	378003	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PDCD10	ENSG00000114209.15	ENST00000392750.7:ENST00000473645.6:ENST00000497056.6:ENST00000492396.5:ENST00000461494.5:ENST00000470131.5:ENST00000475915.6:ENST00000487947.6:ENST00000471885.5:ENST00000479121.5:ENST00000462725.6:ENST00000492139.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.82394	2.8246599999999997	3.82538	0.0494504	1.40963e-4	0.18557	0.002378
chr9	92031239	92031333	10735621	0	-	0.308511	(0.29,0.33]	chr9	812061	2	UTR3	UTR3:EXON_MRNA:INTRON	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	33	2	2.70085	2.8246450000000003	2.94844	0.00217122	4.87372e-4	0.0208941	0.00638318
chrX	134426121	134426219	18863539	0	+	0.346939	(0.33,0.36]	chrX	1607356	9	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.67306	2.82456	2.97606	0.00871774	5.44183e-4	0.0558165	0.00693107
chr1	145992906	145993000	1270240	0	-	0.329787	(0.29,0.33]	chr1	125527	6	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	48	249	2	2.34157	2.824395	3.30722	1.9867e-5	1.42146e-9	5.32009e-4	1.43496e-7
chr19	9564757	9564856	17454601	0	-	0.363636	(0.36,0.39]	chr19	1459747	46	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.66836	2.824305	3.98025	0.0474647	0.00881716	0.17993	0.0562439
chr3	160430598	160430670	3853084	0	+	0.388889	(0.36,0.39]	chr3	327478	1	CDS	CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000488017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	16	2	1.66836	2.824305	3.98025	0.0474647	0.00881716	0.17993	0.0562439
chr6	15521146	15521246	7066942	0	+	0.35	(0.33,0.36]	chr6	540811	10	UTR3	UTR3:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.44986	2.82429	3.19872	0.00563343	6.97647e-5	0.0422191	0.00134581
chr6	41789704	41789791	7150335	0	+	0.425287	(0.42,0.455]	chr6	551654	3	UTR3	UTR3:EXON_MRNA	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	196	2	2.62582	2.8242599999999998	3.0227	5.17496e-6	2.1947e-7	1.59323e-4	1.23429e-5
chr16	71927613	71927699	15733920	0	+	0.511628	(0.49,0.53]	chr16	1253453	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1:ENST00000541180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	35	2	2.49797	2.824205	3.15044	0.00843736	4.32676e-4	0.0546021	0.00583708
chr12	94971479	94971539	13477832	0	-	0.383333	(0.36,0.39]	chr12	1059729	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000684522.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000538372.7:ENST00000547986.5:ENST00000546788.1:ENST00000550187.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	2.75914	2.82416	2.88918	0.00212816	8.69953e-4	0.0206577	0.0101157
chr2	9584060	9584154	2508154	0	-	0.361702	(0.36,0.39]	chr2	226349	2	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.46176	2.82409	3.18642	0.00365867	0.00359152	0.0302391	0.0299719
chr3	141959756	141959840	4483335	0	-	0.380952	(0.36,0.39]	chr3	372578	2	CDS	CDS:UTR3:EXON_MRNA	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000499676.5:ENST00000486111.5:ENST00000477292.5:ENST00000495310.5:ENST00000467072.5:ENST00000487734.5:ENST00000479040.5:ENST00000474279.3:ENST00000467667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	2.46176	2.82409	3.18642	0.00365867	0.00359152	0.0302391	0.0299719
chr4	153370310	153370410	5175344	0	+	0.37	(0.36,0.39]	chr4	417983	69	INTRON	INTRON	RP11-559F19.4:MND1	ENSG00000288637.1:ENSG00000121211.8	ENST00000675518.1:ENST00000675838.1:ENST00000674680.1:ENST00000674967.1:ENST00000675079.1:ENST00000622785.4:ENST00000509752.5:ENST00000240488.8:ENST00000508731.5:ENST00000504860.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	2.46176	2.82409	3.18642	0.00365867	0.00359152	0.0302391	0.0299719
chr10	68965376	68965435	11093220	0	+	0.423729	(0.42,0.455]	chr10	843240	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.47379	2.82388	3.17397	0.00996858	0.0031821	0.0621728	0.0267094
chr16	24771739	24771839	15602534	0	+	0.41	(0.39,0.42]	chr16	1237101	130	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.59744	2.8238700000000003	3.0503	0.00572981	0.00570576	0.0424438	0.0417368
chr5	79284721	79284819	6662409	0	-	0.418367	(0.39,0.42]	chr5	514361	7	EXON_PSEUDO	EXON_PSEUDO	RPS3AP20	ENSG00000213757.3	ENST00000474167.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	23	2	2.59744	2.8238700000000003	3.0503	0.00572981	0.00570576	0.0424438	0.0417368
chrX	135156790	135156874	19246195	0	-	0.404762	(0.39,0.42]	chrX	1634658	4	UTR3	UTR3:EXON_MRNA	CT55	ENSG00000169551.13	ENST00000276241.11:ENST00000344129.2	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.59744	2.8238700000000003	3.0503	0.00572981	0.00570576	0.0424438	0.0417368
chr2	216141252	216141319	2380069	0	+	0.402985	(0.39,0.42]	chr2	213823	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	30	2	2.31773	2.823765	3.3298	0.00382583	0.00165391	0.0319415	0.0163614
chr1	31630612	31630712	919028	0	-	0.55	(0.53,0.59]	chr1	96297	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PEF1	ENSG00000162517.13	ENST00000373703.5:ENST00000461006.5:ENST00000478502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.0289	2.8237300000000003	3.61856	0.0373899	0.0303021	0.146698	0.129773
chr1	109314322	109314384	1219475	0	-	0.564516	(0.53,0.59]	chr1	118940	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000485149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.0289	2.8237300000000003	3.61856	0.0373899	0.0303021	0.146698	0.129773
chr15	50490349	50490437	14926569	0	+	0.545455	(0.53,0.59]	chr15	1173570	2	CDS	CDS:EXON_MRNA	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000425032.7:ENST00000307179.9:ENST00000561206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.0289	2.8237300000000003	3.61856	0.0373899	0.0303021	0.146698	0.129773
chr21	32270467	32270529	18213060	0	-	0.548387	(0.53,0.59]	chr21	1545421	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MIS18A	ENSG00000159055.4	ENST00000290130.4:ENST00000486363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.0289	2.8237300000000003	3.61856	0.0373899	0.0303021	0.146698	0.129773
chr3	169988239	169988299	3877721	0	+	0.533333	(0.53,0.59]	chr3	328522	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC62	ENSG00000008952.17	ENST00000337002.9:ENST00000480708.5:ENST00000469515.6:ENST00000470355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.0289	2.8237300000000003	3.61856	0.0373899	0.0303021	0.146698	0.129773
chr5	176506850	176506950	6402676	0	+	0.54	(0.53,0.59]	chr5	497382	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.0289	2.8237300000000003	3.61856	0.0373899	0.0303021	0.146698	0.129773
chr1	44758048	44758140	173967	0	+	0.521739	(0.49,0.53]	chr1	22365	1	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	2.61847	2.82369	3.02891	8.23332e-4	1.68264e-4	0.0102121	0.00274115
chr6	27147515	27147562	7104168	0	+	0.468085	(0.455,0.49]	chr6	543295	1	UTR3	UTR3:EXON_MRNA:PRIMIRNA	H2AC12:MIR3143	ENSG00000274997.2:ENSG00000265565.1	ENST00000377459.3:ENST00000584253.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	3	28	2	2.50904	2.823455	3.13787	0.0310515	4.66183e-4	0.131262	0.00616585
chr16	75293789	75293870	16035903	0	-	0.333333	(0.33,0.36]	chr16	1287954	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CFDP1	ENSG00000153774.9	ENST00000570103.5:ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.07736	2.8234250000000003	3.56949	0.0442037	5.48184e-4	0.172163	0.00697082
chr2	99389783	99389849	1954118	0	+	0.348485	(0.33,0.36]	chr2	185570	2	CDS	CDS:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11:ENST00000470868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.07736	2.8234250000000003	3.56949	0.0442037	5.48184e-4	0.172163	0.00697082
chr8	27823133	27823205	9771273	0	-	0.347222	(0.33,0.36]	chr8	738672	2	CDS	CDS:EXON_MRNA:INTRON	PBK	ENSG00000168078.10	ENST00000301905.9:ENST00000522944.5:ENST00000524266.1:ENST00000521226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.07736	2.8234250000000003	3.56949	0.0442037	5.48184e-4	0.172163	0.00697082
chr12	111485264	111485331	13540181	0	-	0.447761	(0.42,0.455]	chr12	1065292	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1:ENST00000552323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	2.1201	2.8233449999999998	3.52659	0.00744913	6.87022e-4	0.0492835	0.00876781
chr1	109094775	109094873	396870	0	+	0.397959	(0.39,0.42]	chr1	38418	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1:ENST00000479160.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.62131	2.82324	3.02517	0.00609677	8.3811e-4	0.0439136	0.00981548
chr1	19076820	19076902	875599	0	-	0.573171	(0.53,0.59]	chr1	89875	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375225.7:ENST00000375224.1:ENST00000459947.5:ENST00000486515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	47	2	2.30988	2.822785	3.33569	0.00643853	1.57373e-4	0.0452349	0.00260854
chr22	35406658	35406725	18359442	0	+	0.626866	(0.59,1]	chr22	1560992	1	CDS	CDS:EXON_MRNA:INTRON	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	49	2	2.17889	2.8227450000000003	3.4666	0.025085	0.00133574	0.116848	0.0139317
chr20	5099934	5100029	17887638	0	-	0.410526	(0.39,0.42]	chr20	1514035	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.44959	2.8227349999999998	3.19588	0.00321212	0.00167534	0.0280721	0.0164993
chr20	56406069	56406166	17834538	0	+	0.28866000000000003	[0,0.29]	chr20	1507915	25	UTR3	UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000217109.9	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.67953	2.8224299999999998	2.96533	0.0046416	0.0024246	0.0354333	0.0227938
chr1	47218249	47218347	985532	0	-	0.489796	(0.455,0.49]	chr1	104046	21	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	11	82	2	2.48891	2.8223900000000004	3.15587	7.24922e-4	3.72741e-6	0.00911324	1.21218e-4
chr12	48936503	48936601	13322604	0	-	0.581633	(0.53,0.59]	chr12	1045238	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.27113	2.822215	3.3733	0.0529193	0.0178853	0.18423900000000001	0.0918323
chr4	83461287	83461385	5500203	0	-	0.346939	(0.33,0.36]	chr4	440770	19	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	29	2	2.48427	2.822015	3.15976	0.00437542	0.00150101	0.0340502	0.0152367
chr11	62766507	62766574	11973904	0	+	0.507463	(0.49,0.53]	chr11	917913	1	UTR3	UTR3:EXON_MRNA	POLR2G	ENSG00000168002.12	ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.64528	2.821885	2.99849	0.0202736	0.00630123	0.0984041	0.0445415
chr16	88517841	88517941	15805850	0	+	0.52	(0.49,0.53]	chr16	1257865	13	INTRON	INTRON	ZFPM1	ENSG00000179588.9	ENST00000319555.8	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.64528	2.821885	2.99849	0.0202736	0.00630123	0.0984041	0.0445415
chr19	16191649	16191748	17247933	0	+	0.494949	(0.49,0.53]	chr19	1423116	8	UTR3	UTR3:EXON_MRNA	FAM32A	ENSG00000105058.12	ENST00000263384.12	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.64528	2.821885	2.99849	0.0202736	0.00630123	0.0984041	0.0445415
chr1	35920304	35920404	138959	0	+	0.52	(0.49,0.53]	chr1	17250	7	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.72252	2.82167	2.92082	0.0161474	0.00827037	0.0860154	0.0534766
chr5	140566850	140566939	6255373	0	+	0.52809	(0.49,0.53]	chr5	487692	2	UTR3	UTR3:UTR5:EXON_MRNA	SLC35A4	ENSG00000176087.16	ENST00000623481.3:ENST00000612662.2:ENST00000323146.8:ENST00000514199.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.72252	2.82167	2.92082	0.0161474	0.00827037	0.0860154	0.0534766
chr7	130024424	130024506	9062835	0	-	0.52439	(0.49,0.53]	chr7	692057	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000477578.5:ENST00000471022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.72252	2.82167	2.92082	0.0161474	0.00827037	0.0860154	0.0534766
chr9	37886301	37886390	10257579	0	+	0.505618	(0.49,0.53]	chr9	772020	8	EXON_PSEUDO	EXON_PSEUDO	TMX2P1	ENSG00000213839.4	ENST00000436507.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.72252	2.82167	2.92082	0.0161474	0.00827037	0.0860154	0.0534766
chrX	153963363	153963433	19275745	0	-	0.5	(0.49,0.53]	chrX	1637970	3	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.72252	2.82167	2.92082	0.0161474	0.00827037	0.0860154	0.0534766
chrX	154546035	154546055	19278841	0	-	0.5	(0.49,0.53]	chrX	1638580	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000433845.1:ENST00000497281.5:ENST00000488434.1:ENST00000647501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.72252	2.82167	2.92082	0.0161474	0.00827037	0.0860154	0.0534766
chr1	33009333	33009433	924414	0	-	0.4	(0.39,0.42]	chr1	97512	15	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11	protein_coding	protein_coding	protein_coding	protein_coding	10	64	2	2.62877	2.8216	3.01443	3.044e-4	2.8712e-5	0.00442277	7.20639e-4
chr2	54972864	54972961	2666102	0	-	0.319588	(0.29,0.33]	chr2	238467	8	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000491592.1:ENST00000485749.1:ENST00000402434.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	180	2	2.43729	2.8215950000000003	3.2059	3.64864e-5	1.17499e-8	8.80535e-4	8.88725e-7
chr1	171593119	171593217	537647	0	+	0.377551	(0.36,0.39]	chr1	57757	14	UTR3	UTR3:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.45656	2.82149	3.18642	0.0100637	0.00359152	0.0624019	0.0302391
chrX	66193569	66193638	18717551	0	+	0.434783	(0.42,0.455]	chrX	1596983	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	56	2	2.61136	2.821415	3.03147	3.33599e-4	2.02875e-4	0.00472923	0.0034429
chr4	83460972	83461029	4928320	0	+	0.333333	(0.33,0.36]	chr4	405043	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPS18C	ENSG00000163319.11	ENST00000507019.5:ENST00000507349.5:ENST00000295491.9:ENST00000509970.5:ENST00000505719.1:ENST00000505525.1:ENST00000514581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	13	2	1.82394	2.82113	3.81832	0.0494504	0.0135793	0.18557	0.0745701
chrX	124049004	124049078	18852037	0	+	0.297297	(0.29,0.33]	chrX	1606196	1	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	38	2	2.69364	2.82104	2.94844	0.00217122	2.27069e-4	0.0208941	0.0034888
chr5	32601583	32601683	5925237	0	+	0.29	[0,0.29]	chr5	464197	6	UTR3	UTR3:EXON_MRNA	SUB1	ENSG00000113387.12	ENST00000265073.9:ENST00000511615.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	31	2	2.40395	2.820995	3.23804	0.0210081	5.85812e-5	0.101116	0.00117676
chr17	44035415	44035514	16556065	0	-	0.494949	(0.49,0.53]	chr17	1358855	12	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.38683	2.820985	3.25514	0.012654	0.00227467	0.0718207	0.0209546
chr14	21211864	21211920	14520527	0	-	0.428571	(0.42,0.455]	chr14	1137237	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000553444.1:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000555585.5:ENST00000554417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	84	2	2.04128	2.820925	3.60057	0.00699169	2.55064e-7	0.0475909	1.24895e-5
chr22	40354247	40354327	18376337	0	+	0.5	(0.49,0.53]	chr22	1563767	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADSL:RP5-1042K10.14	ENSG00000239900.14:ENSG00000284431.1	ENST00000623632.4:ENST00000679723.1:ENST00000623063.3:ENST00000637666.2:ENST00000680978.1:ENST00000625194.4:ENST00000681159.1:ENST00000342312.9:ENST00000636714.1:ENST00000680444.1:ENST00000480775.3:ENST00000637669.1:ENST00000216194.11:ENST00000639722.1:ENST00000675622.1:ENST00000679656.1:ENST00000636265.1:ENST00000623978.3:ENST00000477111.2:ENST00000623287.4:ENST00000679609.1:ENST00000624474.1:ENST00000680378.1:ENST00000636124.1:ENST00000638161.1:ENST00000679845.1:ENST00000674592.1:ENST00000636433.1:ENST00000679904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	1.90685	2.820895	3.73494	0.0534351	0.0189345	0.184995	0.0934721
chr2	73958736	73958811	1889992	0	+	0.466667	(0.455,0.49]	chr2	179043	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	23	2	1.62042	2.8204100000000003	4.0204	0.0320389	0.00736097	0.133433	0.0490627
chr1	19187163	19187232	876843	0	-	0.463768	(0.455,0.49]	chr1	90360	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.61991	2.820155	4.0204	0.0447186	0.00736097	0.166115	0.0490627
chr14	52720860	52720920	14285502	0	+	0.333333	(0.33,0.36]	chr14	1116948	1	CDS	CDS:EXON_MRNA:INTRON	PSMC6	ENSG00000100519.12	ENST00000612399.4:ENST00000445930.7:ENST00000556813.1:ENST00000555175.1:ENST00000551328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.63456	2.820145	3.00573	0.00707461	0.00630535	0.0478528	0.044701
chr19	49491815	49491910	17370769	0	+	0.557895	(0.53,0.59]	chr19	1443140	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000677048.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	241	2	2.29524	2.82012	3.345	4.79845e-5	5.48419e-8	0.00109351	3.34616e-6
chr12	21646898	21646957	13236725	0	-	0.423729	(0.42,0.455]	chr12	1037974	1	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000470280.1:ENST00000450584.5:ENST00000539782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.44942	2.8201	3.19078	0.00310864	0.0016479	0.0274272	0.0163521
chr5	41918388	41918487	5952038	0	+	0.454545	(0.42,0.455]	chr5	466508	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.44942	2.8201	3.19078	0.00310864	0.0016479	0.0274272	0.0163521
chr1	42926127	42926224	966968	0	-	0.360825	(0.36,0.39]	chr1	101864	9	UTR3	UTR3:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	48	2	2.32678	2.82009	3.3134	0.0193538	8.0406e-6	0.0943643	2.29917e-4
chr10	43387784	43387884	11461771	0	-	0.59	(0.53,0.59]	chr10	873956	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	93	2	2.28509	2.8198749999999997	3.35466	0.0019345	2.15119e-6	0.0184806	8.40005e-5
chr12	51243046	51243144	12876232	0	+	0.459184	(0.455,0.49]	chr12	1000617	5	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	164	2	2.75321	2.819795	2.88638	9.43683e-6	8.8411e-7	2.89484e-4	3.59876e-5
chr11	125655224	125655320	12194914	0	+	0.447917	(0.42,0.455]	chr11	940882	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.36247	2.81977	3.27707	0.0462889	0.00207325	0.176878	0.0194849
chr15	55205606	55205705	15292652	0	-	0.444444	(0.42,0.455]	chr15	1207067	1	CDS	CDS:EXON_MRNA	RAB27A	ENSG00000069974.16	ENST00000336787.6:ENST00000396307.6:ENST00000564609.5:ENST00000569493.5:ENST00000566877.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.36247	2.81977	3.27707	0.0462889	0.00207325	0.176878	0.0194849
chr2	26192366	26192424	2565651	0	-	0.448276	(0.42,0.455]	chr2	230533	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.36247	2.81977	3.27707	0.0462889	0.00207325	0.176878	0.0194849
chr7	55954908	55954993	8289940	0	+	0.435294	(0.42,0.455]	chr7	631379	1	CDS	CDS:EXON_MRNA:INTRON	RP11-15K19.2:NIPSNAP2:MRPS17	ENSG00000249773.3:ENSG00000146729.10:ENSG00000239789.6	ENST00000426595.1:ENST00000446692.5:ENST00000285298.9:ENST00000443449.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.36247	2.81977	3.27707	0.0462889	0.00207325	0.176878	0.0194849
chr4	99076849	99076923	5548274	0	-	0.391892	(0.39,0.42]	chr4	443163	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5:ENST00000508511.5:ENST00000503130.5:ENST00000502590.5:ENST00000512991.5:ENST00000512604.1:ENST00000505652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	2.01677	2.8197400000000004	3.62271	0.0235818	2.66379e-5	0.111323	6.1526e-4
chr5	14652336	14652436	6462534	0	-	0.52	(0.49,0.53]	chr5	502940	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	45	323	2	2.64162	2.81951	2.9974	1.61108e-6	6.00306e-8	6.56862e-5	3.60785e-6
chr1	65622905	65622981	253543	0	+	0.394737	(0.39,0.42]	chr1	28889	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000616738.4:ENST00000344610.12:ENST00000371058.1:ENST00000471762.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	46	2	2.76711	2.81916	2.87121	4.65001e-4	3.61954e-4	0.00615886	0.00544764
chr14	52642581	52642679	14630056	0	-	0.377551	(0.36,0.39]	chr14	1145962	28	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.47194	2.8190749999999998	3.16621	0.00204665	8.32577e-5	0.0200766	0.00157156
chr3	152299699	152299798	3816855	0	+	0.444444	(0.42,0.455]	chr3	325627	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	101	2	2.01602	2.8190600000000003	3.6221	0.00148572	2.12093e-7	0.0158922	1.0685300000000001e-05
chr17	59111501	59111598	16617321	0	-	0.360825	(0.36,0.39]	chr17	1365438	18	UTR3	UTR3:EXON_MRNA	SKA2	ENSG00000182628.13	ENST00000330137.12	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.1437	2.8190549999999996	3.49441	0.0340515	7.81559e-4	0.141465	0.00927662
chr3	48627169	48627266	4168869	0	-	0.505155	(0.49,0.53]	chr3	349656	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC26A6	ENSG00000225697.13	ENST00000420764.6:ENST00000395550.7:ENST00000337000.12:ENST00000307364.10:ENST00000383733.7:ENST00000489483.5:ENST00000358747.10:ENST00000480524.5:ENST00000455886.6:ENST00000466257.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	1.69633	2.81905	3.94177	0.0531914	0.0104929	0.184818	0.063428
chr17	1677564	1677629	16401572	0	-	0.553846	(0.53,0.59]	chr17	1334938	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.0693	2.8189650000000004	3.56863	0.0160468	3.93456e-5	0.0860154	8.48445e-4
chr7	102654667	102654767	8956510	0	-	0.43	(0.42,0.455]	chr7	685396	119	INTRON	INTRON	RP11-514P8.10:RP11-577H5.5	ENSG00000279168.2:ENSG00000267645.5	ENST00000639209.1:ENST00000476151.5	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	3	24	2	2.32629	2.81895	3.31161	0.0153564	0.00186138	0.0832114	0.018635
chr6	34287754	34287854	7672479	0	-	0.39	(0.36,0.39]	chr6	588026	82	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	11	64	2	2.51153	2.818835	3.12614	3.37219e-4	1.44599e-5	0.00475813	4.07816e-4
chrX	53534515	53534606	19077162	0	-	0.43956	(0.42,0.455]	chrX	1622633	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000488459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.3259	2.818755	3.31161	0.0484606	0.00186138	0.175495	0.018635
chr22	29282473	29282557	18336547	0	+	0.559524	(0.53,0.59]	chr22	1558173	2	CDS	CDS:EXON_MRNA:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	66	2	2.15051	2.818655	3.4868	0.00631495	1.01599e-5	0.0446309	2.80762e-4
chr12	57716461	57716512	12904297	0	+	0.666667	(0.59,1]	chr12	1005882	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000547079.5:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000550438.5:ENST00000550699.5:ENST00000550202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	2.21052	2.8184899999999997	3.42646	0.010462	1.57704e-4	0.063428	0.00261303
chr1	154207168	154207262	1302806	0	-	0.361702	(0.36,0.39]	chr1	131189	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000483282.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	43	2	2.64542	2.81814	2.99086	6.12028e-4	3.25198e-4	0.00763546	0.00500369
chr3	197850491	197850584	4672308	0	-	0.505376	(0.49,0.53]	chr3	386806	2	EXON_PSEUDO	EXON_PSEUDO	AC144530.1	ENSG00000234742.1	ENST00000452862.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	21	2	2.38097	2.818055	3.25514	0.0425419	0.00227467	0.167547	0.0209546
chr16	67542365	67542465	15710611	0	+	0.52	(0.49,0.53]	chr16	1250318	6	CDS	CDS:EXON_MRNA	RIPOR1	ENSG00000039523.20	ENST00000379312.7:ENST00000042381.9:ENST00000540839.7:ENST00000422602.8:ENST00000428437.6:ENST00000569253.5:ENST00000566559.5:ENST00000569733.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.30264	2.81794	3.33324	0.0165402	0.00162947	0.087611	0.0169972
chr2	38481945	38482040	1748000	0	+	0.578947	(0.53,0.59]	chr2	169990	2	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	61	2	1.79365	2.817895	3.84214	0.0165609	6.5494e-6	0.087473	1.94116e-4
chr9	33280952	33281045	10234394	0	+	0.311828	(0.29,0.33]	chr9	769385	2	UTR3	UTR3:EXON_MRNA	CHMP5	ENSG00000086065.14	ENST00000419016.6:ENST00000223500.9	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.50329	2.817705	3.13212	0.00551048	0.00142661	0.0414592	0.0146595
chr9	92067965	92068031	10736001	0	-	0.409091	(0.39,0.42]	chr9	812123	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1:ENST00000482632.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	46	2	2.27012	2.817675	3.36523	0.00945558	2.21919e-5	0.0594007	5.28886e-4
chr2	61876094	61876164	2691409	0	-	0.257143	[0,0.29]	chr2	240555	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	65	2	2.30046	2.8176300000000003	3.3348	5.7527e-4	2.32934e-6	0.00783659	8.19053e-5
chr14	100353686	100353777	14788702	0	-	0.461538	(0.455,0.49]	chr14	1158726	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1:ENST00000553395.5:ENST00000556504.5:ENST00000554084.5:ENST00000557722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	61	2	2.61558	2.81745	3.01932	0.00184897	2.37034e-5	0.0185736	5.60012e-4
chr6	159789546	159789624	8049181	0	-	0.666667	(0.59,1]	chr6	615308	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000538128.5:ENST00000543517.5:ENST00000537390.5:ENST00000536607.1:ENST00000546023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	118	2	2.35041	2.8173950000000003	3.28438	0.00179105	8.33662e-5	0.0173898	0.00171506
chr1	2307651	2307750	7382	0	+	0.313131	(0.29,0.33]	chr1	1667	10	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.43093	2.8173	3.20367	0.00205677	6.11481e-4	0.0194059	0.00818575
chr11	68036493	68036593	11997695	0	+	0.55	(0.53,0.59]	chr11	923402	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NDUFS8	ENSG00000110717.13	ENST00000313468.10:ENST00000526446.5:ENST00000528492.1:ENST00000526339.5:ENST00000524810.5:ENST00000531282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	2.7898	2.81719	2.84458	0.0128364	5.21436e-4	0.0719798	0.00674101
chr7	103651660	103651724	8964818	0	-	0.5625	(0.53,0.59]	chr7	686329	1	CDS	CDS:EXON_MRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	39	2	2.7898	2.81719	2.84458	0.0128364	5.21436e-4	0.0719798	0.00674101
chr14	51999707	51999796	14284082	0	+	0.404494	(0.39,0.42]	chr14	1116779	1	CDS	CDS:UTR3:EXON_MRNA	RTRAF	ENSG00000087302.9	ENST00000557553.5:ENST00000261700.8:ENST00000556760.5:ENST00000553362.1:ENST00000553707.1:ENST00000555319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	2.67647	2.817165	2.95786	0.00138212	5.01348e-4	0.0149186	0.00653592
chr3	160433025	160433117	3853112	0	+	0.391304	(0.39,0.42]	chr3	327492	1	CDS	CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	41	2	2.67647	2.817165	2.95786	0.00138212	5.01348e-4	0.0149186	0.00653592
chr8	47854148	47854214	9816314	0	-	0.30303	(0.29,0.33]	chr8	742653	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	9	50	2	2.7441	2.816865	2.88963	0.00173745	2.91371e-5	0.0179204	6.62759e-4
chr5	17354438	17354531	6473548	0	-	0.752688	(0.59,1]	chr5	503559	9	EXON_LNCRNA	EXON_LNCRNA	FTH1P10	ENSG00000223361.5	ENST00000401830.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	11	203	2	1.32184	2.81674	4.31164	0.0528519	2.38358e-8	0.195536	1.64029e-6
chr1	193082634	193082708	631142	0	+	0.445946	(0.42,0.455]	chr1	64139	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000460715.2:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7:ENST00000367441.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.57051	2.81672	3.06293	0.0265466	0.00492128	0.120071	0.0366648
chr1	197128489	197128577	1435456	0	-	0.420455	(0.42,0.455]	chr1	144074	1	CDS	CDS:EXON_MRNA	ASPM	ENSG00000066279.19	ENST00000367408.6:ENST00000367409.9:ENST00000680265.1:ENST00000294732.11:ENST00000680710.1:ENST00000681879.1:ENST00000680112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.57051	2.81672	3.06293	0.0265466	0.00492128	0.120071	0.0366648
chr12	49992602	49992655	13327210	0	-	0.433962	(0.42,0.455]	chr12	1046328	2	CDS	CDS:EXON_MRNA	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.57051	2.81672	3.06293	0.0265466	0.00492128	0.120071	0.0366648
chr12	57058597	57058695	13353759	0	-	0.428571	(0.42,0.455]	chr12	1052211	31	UTR3	UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.57051	2.81672	3.06293	0.0265466	0.00492128	0.120071	0.0366648
chr17	39201147	39201230	16219452	0	+	0.445783	(0.42,0.455]	chr17	1310956	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	81	2	2.73509	2.8167150000000003	2.89834	1.57027e-4	1.38001e-5	0.00260628	3.94563e-4
chr1	241500383	241500483	1577395	0	-	0.3	(0.29,0.33]	chr1	157514	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	30	2	2.63813	2.816695	2.99526	0.00803229	2.55279e-4	0.0528968	0.00383691
chr15	72209765	72209859	15368104	0	-	0.521277	(0.49,0.53]	chr15	1214156	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000568743.1:ENST00000562784.1:ENST00000564178.5:ENST00000562997.5:ENST00000567087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	72	2	2.51367	2.8166700000000002	3.11967	0.00120983	1.16146e-5	0.0135286	3.1065e-4
chr6	26021778	26021834	7100988	0	+	0.660714	(0.59,1]	chr6	542747	1	CDS	CDS:EXON_MRNA	H4C1	ENSG00000278637.2	ENST00000617569.2	protein_coding	protein_coding	protein_coding	protein_coding	3	49	2	2.71222	2.816595	2.92097	0.0102634	0.00398753	0.0628742	0.031888
chr22	21682436	21682526	18303612	0	+	0.577778	(0.53,0.59]	chr22	1554324	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000681353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	2.29749	2.8165899999999997	3.33569	0.00181945	1.57373e-4	0.0183913	0.00260854
chr6	26170974	26171067	7101423	0	+	0.354839	(0.33,0.36]	chr6	542819	1	UTR3	UTR3:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.31026	2.8164800000000003	3.3227	0.0519897	0.00222616	0.18423900000000001	0.0211992
chr16	23688667	23688745	15595329	0	+	0.576923	(0.53,0.59]	chr16	1236739	1	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564947.1:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.515	2.816395	3.11779	0.0292633	5.11883e-4	0.129773	0.00664583
chr17	1658683	1658763	16401355	0	-	0.55	(0.53,0.59]	chr17	1334864	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.515	2.816395	3.11779	0.0292633	5.11883e-4	0.129773	0.00664583
chr8	103420263	103420363	9527139	0	+	0.38	(0.36,0.39]	chr8	724337	1	CDS	CDS:EXON_MRNA:INTRON	DCAF13	ENSG00000164934.14	ENST00000297579.9:ENST00000616836.4:ENST00000521716.1:ENST00000521971.5:ENST00000618975.1:ENST00000521999.5:ENST00000612750.5:ENST00000518554.2:ENST00000519682.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	2.32678	2.816345	3.30591	0.0193538	1.89047e-4	0.0943643	0.003022
chr11	74253708	74253808	12016980	0	+	0.63	(0.59,1]	chr11	926524	3	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.11642	2.81625	3.51608	0.0144884	0.00108676	0.0790431	0.0118659
chr9	131129278	131129377	10495645	0	+	0.464646	(0.455,0.49]	chr9	793194	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000651639.1:ENST00000451030.5:ENST00000531584.1:ENST00000526412.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	43	2	2.53778	2.816115	3.09445	0.00105636	6.1765e-4	0.0117237	0.00822794
chr6	10731034	10731127	7048625	0	+	0.258065	[0,0.29]	chr6	539767	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.55853	2.816015	3.0735	0.00785095	0.007538	0.0520241	0.0497903
chr10	70206263	70206333	11560644	0	-	0.485714	(0.455,0.49]	chr10	879632	1	CDS	CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000610026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	29	2	2.27152	2.8160100000000003	3.3605	0.00786769	0.00147278	0.0514287	0.0157578
chr16	22285181	22285280	15589646	0	+	0.474747	(0.455,0.49]	chr16	1235909	13	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.27152	2.8160100000000003	3.3605	0.00786769	0.00147278	0.0514287	0.0157578
chr8	20221496	20221596	9220112	0	+	0.42	(0.39,0.42]	chr8	704735	12	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.5823	2.81589	3.04948	0.00246531	1.91318e-5	0.0230262	4.6791e-4
chr19	49528643	49528714	17371050	0	+	0.619718	(0.59,1]	chr19	1443235	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RCN3	ENSG00000142552.8	ENST00000270645.8:ENST00000597801.1:ENST00000593644.1:ENST00000598833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.32455	2.8158149999999997	3.30708	0.0520547	0.00252451	0.193787	0.0226777
chr6	30688133	30688221	7658939	0	-	0.613636	(0.59,1]	chr6	584179	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NRM	ENSG00000137404.15	ENST00000259953.8:ENST00000470733.1:ENST00000462857.5:ENST00000376420.9:ENST00000474864.5:ENST00000482141.5:ENST00000444096.5:ENST00000495946.5:ENST00000376421.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.32455	2.8158149999999997	3.30708	0.0520547	0.00252451	0.193787	0.0226777
chr9	76394089	76394171	10694466	0	-	0.670732	(0.59,1]	chr9	809429	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1:ENST00000472900.5:ENST00000479197.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	38	2	2.32455	2.8158149999999997	3.30708	0.0520547	0.00252451	0.193787	0.0226777
chr19	48617315	48617357	17602813	0	-	0.642857	(0.59,1]	chr19	1482907	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1:ENST00000550671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	7	103	2	2.73318	2.815505	2.89783	0.00198798	2.64785e-4	0.0195488	0.00395458
chr2	62021674	62021774	1843547	0	+	0.38	(0.36,0.39]	chr2	175120	203	INTRON	INTRON	COMMD1	ENSG00000173163.10	ENST00000472729.1:ENST00000311832.5:ENST00000427417.1:ENST00000458337.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	72	2	1.66836	2.81547	3.96258	0.0474647	3.68475e-8	0.17993	2.37799e-6
chr16	85589771	85589871	15797219	0	+	0.38	(0.36,0.39]	chr16	1256993	331	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.44447	2.815445	3.18642	0.0364669	0.00359152	0.145024	0.0302391
chr2	189924515	189924615	2274557	0	+	0.36	(0.33,0.36]	chr2	206589	4	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000478197.1:ENST00000495546.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	35	2	2.78785	2.81543	2.84301	0.00115378	5.76955e-4	0.0130851	0.00731854
chr10	74119766	74119865	11117665	0	+	0.333333	(0.33,0.36]	chr10	846311	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	45	2	2.65435	2.8151349999999997	2.97592	4.1482e-4	2.76228e-4	0.00607555	0.00409115
chr17	44321454	44321554	16557811	0	-	0.57	(0.53,0.59]	chr17	1359345	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000593166.1:ENST00000537904.6:ENST00000588767.5:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	71	2	2.66813	2.814845	2.96156	5.09538e-4	9.05921e-5	0.00662599	0.00182947
chr10	46006309	46006403	11470927	0	-	0.404255	(0.39,0.42]	chr10	874825	14	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5	protein_coding	protein_coding	protein_coding	protein_coding	15	97	2	2.77668	2.8148	2.85292	7.05678e-5	6.64272e-6	0.00149202	1.96801e-4
chr21	8393531	8393630	18041465	0	+	0.525253	(0.49,0.53]	chr21	1530861	47	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	3624	24998	2	2.64552	2.814725	2.98393	3.38264e-8	6.8389e-10	2.20259e-6	8.20012e-8
chr7	103312099	103312199	8441131	0	+	0.35	(0.33,0.36]	chr7	645045	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000443722.5:ENST00000444457.5:ENST00000453466.1:ENST00000469560.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.78095	2.81468	2.84841	0.00388614	0.0020676	0.0322851	0.0194849
chr20	2655594	2655670	17652861	0	+	0.447368	(0.42,0.455]	chr20	1492188	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000480992.5:ENST00000484998.5:ENST00000612233.1:ENST00000467196.5:ENST00000616692.1:ENST00000415272.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.20599	2.814545	3.4231	0.0227797	0.00112541	0.105293	0.0128481
chr11	14493641	14493726	12281929	0	-	0.411765	(0.39,0.42]	chr11	949669	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5:ENST00000529866.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.87119	2.8143599999999998	3.75753	0.0373134	2.04026e-4	0.152293	0.00320361
chr6	89083767	89083867	7271487	0	+	0.4	(0.39,0.42]	chr6	560635	1	CDS_START	CDS_START:CDS:EXON_MRNA	PNRC1	ENSG00000146278.11	ENST00000336032.4:ENST00000369472.1:ENST00000354922.3	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.87119	2.8143599999999998	3.75753	0.0373134	2.04026e-4	0.152293	0.00320361
chr12	24842081	24842152	13255983	0	-	0.394366	(0.39,0.42]	chr12	1038874	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	5	39	2	2.48908	2.8141749999999996	3.13927	0.0101318	9.67557e-5	0.0626311	0.00175376
chr10	73252552	73252622	11570308	0	-	0.585714	(0.53,0.59]	chr10	880695	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3:ENST00000473427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	2.14828	2.814095	3.47991	0.00373986	6.7738e-5	0.0312988	0.0013157
chr8	47859610	47859684	9816376	0	-	0.540541	(0.53,0.59]	chr8	742681	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	2.3186	2.814015	3.30943	0.00299541	0.0018255	0.0256157	0.0183913
chr7	5605322	5605374	8112120	0	+	0.519231	(0.49,0.53]	chr7	620039	2	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	77	2	1.85272	2.813985	3.77525	0.0211739	2.13421e-7	0.101864	1.07444e-5
chr16	84566459	84566555	16062254	0	-	0.552083	(0.53,0.59]	chr16	1290246	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000567278.1:ENST00000564057.1:ENST00000561707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	2.50447	2.813935	3.1234	0.0301162	0.00390623	0.130016	0.0322851
chr19	28538272	28538372	17526198	0	-	0.31	(0.29,0.33]	chr19	1470950	31	INTRON	INTRON	AC005307.5:AC005616.1	ENSG00000283403.1:ENSG00000266893.1	ENST00000592347.5:ENST00000589999.1	lncRNA	lncRNA	lncRNA	lncRNA	15	92	2	2.50855	2.813935	3.11932	0.0023535	2.63736e-7	0.0222204	1.27973e-5
chr4	78180963	78181061	5481620	0	-	0.561224	(0.53,0.59]	chr4	439414	2	EXON_PSEUDO	EXON_PSEUDO	SERBP1P5	ENSG00000249565.2	ENST00000510079.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	23	2	2.50447	2.813935	3.1234	0.0301162	0.00390623	0.130016	0.0322851
chr7	75416880	75416976	8858918	0	-	0.552083	(0.53,0.59]	chr7	676960	2	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	23	2	2.50447	2.813935	3.1234	0.0301162	0.00390623	0.130016	0.0322851
chr1	26779790	26779887	111010	0	+	0.546392	(0.53,0.59]	chr1	13354	9	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.515	2.8138750000000003	3.11275	0.0292633	0.00407571	0.129773	0.032143
chr12	6599852	6599932	13187407	0	-	0.5375	(0.53,0.59]	chr12	1032390	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	23	2	2.515	2.8138750000000003	3.11275	0.0292633	0.00407571	0.129773	0.032143
chr12	57231480	57231560	12902112	0	+	0.5875	(0.53,0.59]	chr12	1005187	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000557740.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000553324.5:ENST00000553950.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000557703.5:ENST00000554310.5:ENST00000553529.5:ENST00000554656.5:ENST00000557427.5:ENST00000553474.5:ENST00000555773.5:ENST00000555774.5:ENST00000449049.7:ENST00000554975.5:ENST00000555116.5:ENST00000553837.5:ENST00000554604.5:ENST00000553949.1:ENST00000556737.1:ENST00000553868.1:ENST00000555213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.515	2.8138750000000003	3.11275	0.0292633	0.00407571	0.129773	0.032143
chr15	90879670	90879722	15103351	0	+	0.538462	(0.53,0.59]	chr15	1188565	1	CDS	CDS:UTR3:EXON_MRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000558794.1:ENST00000560018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	23	2	2.515	2.8138750000000003	3.11275	0.0292633	0.00407571	0.129773	0.032143
chr2	96296613	96296691	2790507	0	-	0.551282	(0.53,0.59]	chr2	248813	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	2	23	2	2.515	2.8138750000000003	3.11275	0.0292633	0.00407571	0.129773	0.032143
chr3	25598225	25598306	4093015	0	-	0.37037	(0.36,0.39]	chr3	342037	4	UTR3	UTR3:EXON_MRNA	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.78659	2.81374	2.84089	0.0132982	0.0128123	0.0740932	0.0719798
chr14	102039637	102039732	14495785	0	+	0.557895	(0.53,0.59]	chr14	1133226	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	58	2	2.33159	2.813735	3.29588	0.00153017	1.96478e-4	0.0155189	0.00335505
chr17	45103792	45103876	16237747	0	+	0.5	(0.49,0.53]	chr17	1315020	2	CDS	CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000590114.6:ENST00000592654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	2.69746	2.8133150000000002	2.92917	0.00380414	4.42985e-5	0.0317723	9.29789e-4
chr7	44799246	44799277	8261635	0	+	0.516129	(0.49,0.53]	chr7	629462	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	82	2	2.59879	2.813175	3.02756	1.9255e-4	2.24576e-5	0.00330662	5.34743e-4
chr15	29701303	29701400	15183785	0	-	0.340206	(0.33,0.36]	chr15	1195074	21	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000400007.8	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.7655	2.813115	2.86073	0.0175892	0.0105608	0.0918323	0.0644466
chr2	201085615	201085682	2310241	0	+	0.358209	(0.33,0.36]	chr2	209057	1	UTR3	UTR3:EXON_MRNA	NDUFB3	ENSG00000119013.10	ENST00000237889.9:ENST00000433898.5:ENST00000684175.1:ENST00000682325.1:ENST00000454214.1:ENST00000684420.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.7655	2.813115	2.86073	0.0175892	0.0105608	0.0918323	0.0644466
chr7	156891369	156891469	9147740	0	-	0.36	(0.33,0.36]	chr7	699283	541	INTRON	INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5:ENST00000414218.1:ENST00000434453.1:ENST00000498034.5:ENST00000433968.5:ENST00000485985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.7655	2.813115	2.86073	0.0175892	0.0105608	0.0918323	0.0644466
chr20	49114107	49114203	17999396	0	-	0.333333	(0.33,0.36]	chr20	1525563	9	UTR3	UTR3:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	14	82	2	2.55863	2.8130550000000003	3.06748	3.9745e-4	1.90456e-6	0.00588767	6.8971e-5
chr4	80018897	80018976	5484649	0	-	0.367089	(0.36,0.39]	chr4	439576	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ANTXR2	ENSG00000163297.18	ENST00000403729.7:ENST00000449651.5:ENST00000679571.1:ENST00000681710.1:ENST00000680913.1:ENST00000681115.1:ENST00000404191.5:ENST00000346652.10:ENST00000307333.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.38564	2.812945	3.24025	0.0476159	2.74161e-4	0.17993	0.00406677
chr5	41918190	41918289	5952036	0	+	0.444444	(0.42,0.455]	chr5	466508	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.16214	2.812815	3.46349	0.00696724	9.0025e-4	0.0474632	0.0102618
chr20	41115370	41115439	17790083	0	+	0.362319	(0.36,0.39]	chr20	1503509	1	CDS	CDS:UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.76778	2.81281	2.85784	0.00365703	0.00191736	0.0307238	0.0183299
chr1	76700444	76700538	307203	0	+	0.574468	(0.53,0.59]	chr1	31551	8	EXON_PSEUDO	EXON_PSEUDO	TPI1P1	ENSG00000226415.1	ENST00000420977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	46	2	2.68432	2.812785	2.94125	0.0012261800000000001	0.00118971	0.0135648	0.0128045
chr11	17330211	17330297	11827535	0	+	0.44186	(0.42,0.455]	chr11	905402	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUCB2	ENSG00000070081.17	ENST00000646648.1:ENST00000533773.5:ENST00000529010.6:ENST00000323688.10:ENST00000458064.6:ENST00000622082.4:ENST00000527580.5:ENST00000531242.1:ENST00000527735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	1.99701	2.812785	3.62856	0.0235036	4.02604e-4	0.111072	0.00549837
chr12	49764351	49764448	12869286	0	+	0.443299	(0.42,0.455]	chr12	999645	16	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	2.476	2.812785	3.14957	7.24984e-4	9.82296e-5	0.00869086	0.00193927
chr5	95656900	95656998	6107380	0	+	0.306122	(0.29,0.33]	chr5	478161	7	UTR3	UTR3:EXON_MRNA	RFESD	ENSG00000175449.14	ENST00000380005.9:ENST00000311364.8:ENST00000458310.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.17855	2.81276	3.44697	0.0183673	0.00101442	0.0928041	0.0112862
chr14	100334084	100334183	14788496	0	-	0.565657	(0.53,0.59]	chr14	1158691	4	UTR3	UTR3:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.7898	2.8126100000000003	2.83542	0.0128364	1.95776e-4	0.0719798	0.00310806
chr18	3255745	3255818	16729738	0	+	0.493151	(0.49,0.53]	chr18	1380103	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000536605.1:ENST00000580887.5:ENST00000578038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	91	2	2.45352	2.811775	3.17003	0.00164469	1.6419e-6	0.0171491	6.06681e-5
chr1	112670923	112671022	411481	0	+	0.292929	(0.29,0.33]	chr1	40540	9	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	13	57	2	1.85176	2.811755	3.77175	0.00568289	1.12402e-6	0.0424438	4.41253e-5
chr18	8916984	8917081	16750728	0	+	0.43299	(0.42,0.455]	chr18	1381318	3	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	13	84	2	2.76613	2.81161	2.85709	1.7179e-4	1.32236e-5	0.00279324	3.80291e-4
chr7	107917992	107918061	8457465	0	+	0.492754	(0.49,0.53]	chr7	646326	2	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	68	2	2.18417	2.811505	3.43884	0.00578816	3.18417e-6	0.0427749	1.06148e-4
chr2	69328270	69328354	2718344	0	-	0.464286	(0.455,0.49]	chr2	242007	1	CDS	CDS:EXON_MRNA:INTRON	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1:ENST00000674438.1	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.12994	2.8114999999999997	3.49306	0.0304832	6.07633e-5	0.130204	0.00121305
chr1	201153823	201153923	1446686	0	-	0.58	(0.53,0.59]	chr1	145216	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	2.71318	2.81148	2.90978	0.00857883	0.00340745	0.0552386	0.0283456
chr11	57698653	57698749	11952122	0	+	0.541667	(0.53,0.59]	chr11	914704	2	CDS	CDS:EXON_MRNA	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000287169.8:ENST00000529480.1:ENST00000529447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	30	2	2.71318	2.81148	2.90978	0.00857883	0.00340745	0.0552386	0.0283456
chr3	48603563	48603643	4168750	0	-	0.575	(0.53,0.59]	chr3	349597	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000460105.1:ENST00000472438.5:ENST00000412343.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	2.71318	2.81148	2.90978	0.00857883	0.00340745	0.0552386	0.0283456
chrX	119871831	119871911	18841948	0	+	0.575	(0.53,0.59]	chrX	1605621	1	UTR5	UTR5:EXON_MRNA	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.71318	2.81148	2.90978	0.00857883	0.00340745	0.0552386	0.0283456
chr1	21876228	21876316	891230	0	-	0.590909	(0.59,1]	chr1	92523	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	8	143	2	1.48516	2.811185	4.13721	0.047789	3.57373e-7	0.18008	1.65557e-5
chr6	27807443	27807525	7649601	0	-	0.439024	(0.42,0.455]	chr6	582799	1	UTR3	UTR3:EXON_MRNA	H2BC13	ENSG00000185130.5	ENST00000377401.3	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.54043	2.811125	3.08182	0.00705852	6.80627e-4	0.047732	0.00876781
chr15	90906433	90906497	15103600	0	+	0.484375	(0.455,0.49]	chr15	1188699	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000559132.3:ENST00000558640.5:ENST00000561046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	2.69053	2.8110299999999997	2.93153	0.0182983	1.08756e-4	0.0925808	0.00193746
chr14	69380209	69380291	14687497	0	-	0.353659	(0.33,0.36]	chr14	1150256	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	181	2	2.50146	2.8109599999999997	3.12046	1.15762e-5	4.97022e-8	3.42003e-4	3.06743e-6
chr6	125275946	125276045	7932920	0	-	0.414141	(0.39,0.42]	chr6	607258	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HDDC2	ENSG00000111906.18	ENST00000608456.5:ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000609021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	96	2	1.961	2.810905	3.66081	0.00719538	4.99941e-8	0.0486209	3.08436e-6
chr4	3514751	3514839	5285662	0	-	0.715909	(0.59,1]	chr4	425795	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.77418	2.81083	2.84748	0.0160729	0.0124539	0.0860154	0.0712518
chr6	52276267	52276336	7736714	0	-	0.623188	(0.59,1]	chr6	593727	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000476448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.77418	2.81083	2.84748	0.0160729	0.0124539	0.0860154	0.0712518
chr9	136417038	136417126	10512246	0	+	0.636364	(0.59,1]	chr9	796196	2	CDS	CDS:EXON_MRNA	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000620895.1:ENST00000462616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.77418	2.81083	2.84748	0.0160729	0.0124539	0.0860154	0.0712518
chr2	96285259	96285340	2790371	0	-	0.518519	(0.49,0.53]	chr2	248734	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000429650.1:ENST00000480615.1:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.46958	2.8108250000000004	3.15207	0.00347189	0.00344146	0.0292838	0.0286293
chr20	31766555	31766618	17749628	0	+	0.365079	(0.36,0.39]	chr20	1498009	1	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.32678	2.81076	3.29474	0.0193538	0.00194306	0.0943643	0.0185233
chr14	101763962	101764061	14493229	0	+	0.434343	(0.42,0.455]	chr14	1132778	6	INTRON	INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000557268.5:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	38	2	2.8096	2.8107550000000003	2.81191	0.00253237	6.31824e-4	0.0233955	0.0078507
chr10	68983106	68983204	11093408	0	+	0.387755	(0.36,0.39]	chr10	843302	4	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	11	60	2	2.02063	2.81054	3.60045	0.00306143	4.13757e-6	0.0271725	1.32555e-4
chr10	87050781	87050878	11604801	0	-	0.43299	(0.42,0.455]	chr10	883719	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000683647.1:ENST00000683813.1:ENST00000474574.2:ENST00000684032.1:ENST00000684338.1:ENST00000487058.2:ENST00000684201.1:ENST00000684690.1:ENST00000682507.1:ENST00000683649.1:ENST00000683783.1:ENST00000681988.1:ENST00000684665.1:ENST00000684434.1:ENST00000682622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.8096	2.810485	2.81137	0.0120386	0.00253237	0.0700876	0.0233955
chr19	11133628	11133724	17230328	0	+	0.427083	(0.42,0.455]	chr19	1419642	23	UTR3	UTR3:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.8096	2.810485	2.81137	0.0120386	0.00253237	0.0700876	0.0233955
chr2	218592303	218592402	2390042	0	+	0.434343	(0.42,0.455]	chr2	214839	1	CDS	CDS:EXON_MRNA	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000273064.11:ENST00000295701.9:ENST00000473626.1:ENST00000418808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.8096	2.810485	2.81137	0.0120386	0.00253237	0.0700876	0.0233955
chr4	157768062	157768113	5750317	0	-	0.431373	(0.42,0.455]	chr4	454339	2	EXON_SMALL	EXON_SMALL:INTRON	RP11-364P22.4:Y_RNA	ENSG00000286133.2:ENSG00000200521.1	ENST00000652341.2:ENST00000363651.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	3	24	2	2.8096	2.810485	2.81137	0.0120386	0.00253237	0.0700876	0.0233955
chr5	131200391	131200489	6220221	0	+	0.438776	(0.42,0.455]	chr5	484034	9	UTR3	UTR3:EXON_MRNA	LYRM7	ENSG00000186687.16	ENST00000379380.9	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.8096	2.810485	2.81137	0.0120386	0.00253237	0.0700876	0.0233955
chrX	40051436	40051532	19044892	0	-	0.291667	(0.29,0.33]	chrX	1618692	3	UTR3	UTR3:EXON_MRNA:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	34	2	2.80161	2.81029	2.81897	0.00415667	2.43076e-4	0.0325842	0.00367789
chr12	56133416	56133465	12898299	0	+	0.469388	(0.455,0.49]	chr12	1004242	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.12994	2.810135	3.49033	0.0304832	7.92678e-4	0.130204	0.00933379
chr6	35890939	35891039	7678511	0	-	0.48	(0.455,0.49]	chr6	588615	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.12994	2.810135	3.49033	0.0304832	7.92678e-4	0.130204	0.00933379
chr19	12797080	12797166	17470947	0	-	0.488372	(0.455,0.49]	chr19	1463172	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	121	2	2.20322	2.809945	3.41667	8.8931e-4	9.67804e-8	0.0108355	5.42932e-6
chr16	88803995	88804059	15807265	0	+	0.78125	(0.59,1]	chr16	1258106	2	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.38614	2.80981	3.23348	0.0128707	0.00352837	0.0725185	0.0298518
chr16	69693441	69693541	15725289	0	+	0.55	(0.53,0.59]	chr16	1252127	18	CDS	CDS:UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	47	2	2.23406	2.80972	3.38538	0.00870728	1.18366e-4	0.0558165	0.00207204
chr4	87357278	87357347	5518204	0	-	0.376812	(0.36,0.39]	chr4	441942	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSD17B11	ENSG00000198189.11	ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1:ENST00000513854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	32	2	2.6181	2.809625	3.00115	0.00176908	0.0012486	0.0172426	0.0137762
chr22	35194856	35194937	18493715	0	-	0.469136	(0.455,0.49]	chr22	1577717	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	LINC01399	ENSG00000233080.3	ENST00000423311.1:ENST00000458450.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	4	36	2	2.50904	2.80953	3.11002	0.0310515	1.15314e-4	0.131262	0.0020426
chr14	52004416	52004516	14284138	0	+	0.43	(0.42,0.455]	chr14	1116799	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RTRAF	ENSG00000087302.9	ENST00000261700.8:ENST00000556760.5:ENST00000553362.1:ENST00000553479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.34191	2.8094900000000003	3.27707	0.0159091	0.00207325	0.0854674	0.0194849
chr9	131144446	131144530	10495805	0	+	0.583333	(0.53,0.59]	chr9	793240	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding	16	127	2	2.06578	2.809435	3.55309	8.23532e-4	4.52324e-7	0.010214	2.03369e-5
chr17	7240477	7240571	16429072	0	-	0.510638	(0.49,0.53]	chr17	1339315	6	UTR3	UTR3:EXON_MRNA	GABARAP:CTD-2545G14.7	ENSG00000170296.10:ENSG00000262526.2	ENST00000302386.10:ENST00000577035.5:ENST00000570760.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	56	2	2.25637	2.80932	3.36227	0.00420813	2.26725e-5	0.0329484	5.39086e-4
chr10	35529972	35530036	11009584	0	+	0.40625	(0.39,0.42]	chr10	837242	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000465416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	34	2	2.56748	2.80889	3.0503	0.00570576	9.10614e-4	0.0424438	0.0103521
chr13	54440877	54440965	14036975	0	-	0.579545	(0.53,0.59]	chr13	1101195	3	EXON_PSEUDO	EXON_PSEUDO	RPL13AP25	ENSG00000136149.6	ENST00000484130.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	39	2	2.56002	2.808885	3.05775	0.00634904	6.94592e-4	0.0446708	0.00846751
chr6	34587783	34587882	7674078	0	-	0.535354	(0.53,0.59]	chr6	588118	6	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.56002	2.808885	3.05775	0.00634904	6.94592e-4	0.0446708	0.00846751
chr13	37005919	37005972	13694915	0	+	0.509434	(0.49,0.53]	chr13	1078940	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EXOSC8	ENSG00000120699.13	ENST00000489088.5:ENST00000239893.9:ENST00000389704.4:ENST00000474661.5:ENST00000490537.6:ENST00000488779.5:ENST00000464235.5:ENST00000495092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.26641	2.8088699999999998	3.35133	0.0190546	0.00150139	0.093872	0.0152367
chr19	48383292	48383327	17601669	0	-	0.485714	(0.455,0.49]	chr19	1482709	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000597017.5	protein_coding	protein_coding	protein_coding	protein_coding	8	58	2	2.60247	2.80884	3.01521	8.0052e-4	6.35543e-5	0.00996169	0.00124813
chr11	838192	838283	11759166	0	+	0.637363	(0.59,1]	chr11	898603	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CD151	ENSG00000177697.19	ENST00000322008.9:ENST00000397421.5:ENST00000397420.9:ENST00000645878.1:ENST00000532045.6:ENST00000530726.5:ENST00000528011.2:ENST00000525181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.69477	2.8087850000000003	2.9228	0.020208	0.00981698	0.0978331	0.0612992
chr4	2928523	2928620	4687489	0	+	0.597938	(0.59,1]	chr4	388871	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000536424.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	36	2	2.69477	2.8087850000000003	2.9228	0.020208	0.00981698	0.0978331	0.0612992
chr6	32127102	32127194	7664528	0	-	0.586957	(0.53,0.59]	chr6	586031	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000485314.5:ENST00000468502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	2.15403	2.8087600000000004	3.46349	0.0118065	9.2216e-4	0.0686664	0.0104432
chr8	47972925	47972994	9316254	0	+	0.608696	(0.59,1]	chr8	713580	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000523853.1:ENST00000518382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	36	2	2.76802	2.8087299999999997	2.84944	0.0158525	0.0128238	0.0854671	0.0719798
chr17	81511433	81511533	16707876	0	-	0.68	(0.59,1]	chr17	1377336	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	373	2	2.44958	2.8086450000000003	3.16771	7.6628e-5	2.07214e-6	0.00160569	7.36033e-5
chr17	29550705	29550805	16181260	0	+	0.31	(0.29,0.33]	chr17	1305956	78	UTR3	UTR3:EXON_MRNA	TAOK1	ENSG00000160551.12	ENST00000261716.8	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	1.99415	2.808635	3.62312	0.0333928	0.0222826	0.140128	0.104593
chr10	74100947	74101022	11117464	0	+	0.52	(0.49,0.53]	chr10	846263	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	47	2	2.02795	2.808605	3.58926	0.0110299	3.32125e-5	0.0652374	7.33555e-4
chr5	140528942	140529036	6255125	0	+	0.457447	(0.455,0.49]	chr5	487634	9	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.52734	2.808475	3.08961	0.00792433	0.00445157	0.0523592	0.0340751
chr20	50082380	50082476	18004131	0	-	0.520833	(0.49,0.53]	chr20	1525944	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	113	2	2.50524	2.8084100000000003	3.11158	6.1573e-5	5.22531e-6	0.00122732	1.76122e-4
chr4	3525032	3525132	5285777	0	-	0.63	(0.59,1]	chr4	425836	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1:ENST00000650633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	37	2	2.42639	2.808195	3.19	0.0409084	0.0039188	0.163285	0.0314356
chr15	72199116	72199205	15367984	0	-	0.573034	(0.53,0.59]	chr15	1214121	2	UTR3	UTR3:EXON_MRNA	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000565143.1:ENST00000567118.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	189	2	2.70352	2.80811	2.9127	6.46426e-6	3.15751e-6	1.92412e-4	1.16228e-4
chr1	35192312	35192403	936847	0	-	0.802198	(0.59,1]	chr1	98518	2	CDS	CDS:EXON_MRNA	SFPQ	ENSG00000116560.11	ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.36593	2.8078250000000002	3.24972	0.0141097	0.00314037	0.077233	0.0264943
chr17	7309735	7309800	16103912	0	+	0.569231	(0.53,0.59]	chr17	1296295	1	CDS	CDS:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000355068.4:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000575001.1:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	1.69162	2.80747	3.92332	0.0342431	3.68546e-6	0.141233	1.31185e-4
chr3	177021824	177021923	4593445	0	-	0.323232	(0.29,0.33]	chr3	379622	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	36	2	2.53283	2.8072600000000003	3.08169	0.00114594	5.94788e-4	0.0130468	0.00746384
chr16	20786077	20786151	15582902	0	+	0.391892	(0.39,0.42]	chr16	1234788	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1:ENST00000567387.5:ENST00000561499.1:ENST00000569141.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	76	2	2.66618	2.80724	2.9483	1.18306e-4	4.28199e-5	0.00224891	9.07048e-4
chr4	144140635	144140693	5696859	0	-	0.431034	(0.42,0.455]	chr4	451588	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000360771.8:ENST00000642295.1:ENST00000650526.1:ENST00000324022.14:ENST00000646447.1:ENST00000535709.6:ENST00000508337.1:ENST00000643254.1:ENST00000643148.1:ENST00000642738.1:ENST00000642713.1:ENST00000509346.5:ENST00000514603.1:ENST00000644398.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	10	71	2	2.20868	2.806635	3.40459	0.0019911	4.097e-6	0.019572	1.31594e-4
chr22	21623541	21623639	18303197	0	+	0.530612	(0.53,0.59]	chr22	1554195	20	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	2.38191	2.80638	3.2308500000000002	0.00477439	2.81517e-4	0.0368489	0.00415519
chr1	236556178	236556258	1568243	0	-	0.4125	(0.39,0.42]	chr1	156984	2	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.49701	2.80625	3.11549	0.0339607	0.00403491	0.141431	0.032143
chr7	12336987	12337073	8683016	0	-	0.5	(0.49,0.53]	chr7	663918	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.57142	2.8062449999999997	3.04107	0.00533879	8.92776e-4	0.0392268	0.0108581
chr7	100093346	100093401	8949621	0	-	0.472727	(0.455,0.49]	chr7	683502	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:PRIMIRNA:INTRON	MCM7:MIR25:MIR93	ENSG00000166508.18:ENSG00000207547.1:ENSG00000207757.1	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000384816.1:ENST00000385024.1:ENST00000491245.6:ENST00000493352.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	8	58	2	2.1179	2.80607	3.49424	0.00480128	9.02087e-6	0.0370496	2.53429e-4
chr1	17408409	17408506	874014	0	-	0.536082	(0.53,0.59]	chr1	89600	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	62	2	1.56672	2.806	4.04528	0.0125504	4.28524e-5	0.0717149	9.98851e-4
chr7	128859086	128859180	8522577	0	+	0.531915	(0.53,0.59]	chr7	650485	7	UTR3	UTR3:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	2.7542	2.80541	2.85662	4.88685e-4	3.14256e-4	0.00686067	0.00452711
chr18	21868557	21868657	16779534	0	+	0.32	(0.29,0.33]	chr18	1384234	40	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.27411	2.805345	3.33658	0.00686811	1.69227e-4	0.0468903	0.00275464
chr12	56664288	56664383	13352208	0	-	0.357895	(0.33,0.36]	chr12	1051779	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	159	2	2.62655	2.8052799999999998	2.98401	3.18276e-6	4.41351e-7	1.16815e-4	1.99209e-5
chr1	247876389	247876489	816518	0	+	0.44	(0.42,0.455]	chr1	80728	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.57051	2.80527	3.04003	0.0265466	7.68268e-4	0.120071	0.00916171
chr1	24842429	24842529	103293	0	+	0.32	(0.29,0.33]	chr1	12089	16	UTR3	UTR3:EXON_MRNA	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr14	102027437	102027490	14495636	0	+	0.301887	(0.29,0.33]	chr14	1133168	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000647119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr16	31121676	31121769	15633231	0	+	0.322581	(0.29,0.33]	chr16	1241129	7	INTRON	INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr2	169546314	169546411	3006831	0	-	0.309278	(0.29,0.33]	chr2	266365	2	CDS	CDS:EXON_MRNA	FASTKD1	ENSG00000138399.18	ENST00000453153.7:ENST00000453929.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr3	120329101	120329201	4404408	0	-	0.33	(0.29,0.33]	chr3	365211	47	UTR3	UTR3:EXON_MRNA	LRRC58	ENSG00000163428.4	ENST00000295628.4	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr4	139384831	139384904	5128421	0	+	0.30137	(0.29,0.33]	chr4	415238	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000485905.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr6	75255107	75255207	7800320	0	-	0.32	(0.29,0.33]	chr6	597646	23	UTR3	UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.67277	2.8050699999999997	2.93737	0.0255386	0.00826984	0.117089	0.0534766
chr6	36972723	36972796	7683241	0	-	0.520548	(0.49,0.53]	chr6	589218	2	CDS	CDS:EXON_MRNA	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10:ENST00000418541.6:ENST00000460219.2	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.66773	2.80475	3.94177	0.0381288	0.0104929	0.149227	0.063428
chr17	38753155	38753255	16217775	0	+	0.6	(0.59,1]	chr17	1310736	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.32384	2.80471	3.28558	0.0157639	3.5027e-4	0.0851539	0.00532165
chr11	65121491	65121591	12421567	0	-	0.68	(0.59,1]	chr11	963723	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAU	ENSG00000149806.11	ENST00000529639.6:ENST00000531743.5:ENST00000527548.5:ENST00000525297.5:ENST00000531357.1:ENST00000279259.7:ENST00000529259.1:ENST00000526555.5:ENST00000434372.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	213	2	2.52102	2.80463	3.08824	1.69434e-4	2.23708e-5	0.00275789	5.87385e-4
chr18	31542519	31542602	16809123	0	+	0.53012	(0.53,0.59]	chr18	1386474	1	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.0404	2.8045150000000003	3.56863	0.0362529	3.93456e-5	0.148525	8.48445e-4
chr2	48377813	48377912	1788993	0	+	0.383838	(0.36,0.39]	chr2	172754	25	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.16	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.85874	2.804405	3.75007	0.0415243	2.12157e-4	0.164804	0.00329275
chr7	131488618	131488717	8535489	0	+	0.40404	(0.39,0.42]	chr7	651710	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000352689.11:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.55844	2.80437	3.0503	0.0263695	0.00570576	0.117164	0.0424438
chr5	75361232	75361330	6037179	0	+	0.244898	[0,0.29]	chr5	473669	10	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.61628	2.8042	2.99212	0.0101434	0.0069187	0.0626311	0.0473262
chr1	225415277	225415332	1528199	0	-	0.363636	(0.36,0.39]	chr1	152816	1	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.76749	2.80419	2.84089	0.0128123	0.00287858	0.0719798	0.0247002
chr9	111900411	111900511	10420038	0	+	0.37	(0.36,0.39]	chr9	784432	27	INTRON	INTRON	UGCG	ENSG00000148154.10	ENST00000374279.4:ENST00000489355.1:ENST00000495085.1:ENST00000490110.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.76749	2.80419	2.84089	0.0128123	0.00287858	0.0719798	0.0247002
chr2	112647323	112647393	2001748	0	+	0.471429	(0.455,0.49]	chr2	190008	1	CDS	CDS:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.63872	2.803985	2.96925	0.00698725	0.00510378	0.0473262	0.0390492
chr15	59652205	59652277	15315593	0	-	0.402778	(0.39,0.42]	chr15	1208778	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GTF2A2:AC092755.4	ENSG00000140307.11:ENSG00000227161.1	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5:ENST00000396061.5:ENST00000484743.5:ENST00000559141.1:ENST00000559706.1:ENST00000441746.1:ENST00000480768.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	8	52	2	2.7778	2.803935	2.83007	2.79638e-4	2.4817e-4	0.0041355	0.00406956
chr1	150810769	150810866	1290604	0	-	0.412371	(0.39,0.42]	chr1	128516	12	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.18155	2.803825	3.4261	0.0283931	0.00107164	0.127654	0.0118238
chr2	86146132	86146197	2772799	0	-	0.4	(0.39,0.42]	chr2	246315	2	CDS	CDS:EXON_MRNA:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.18155	2.803825	3.4261	0.0283931	0.00107164	0.127654	0.0118238
chr16	10387576	10387658	15537533	0	+	0.390244	(0.39,0.42]	chr16	1230572	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATF7IP2	ENSG00000166669.13	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000562102.5:ENST00000561932.5:ENST00000566316.5:ENST00000543967.5:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5:ENST00000562396.1:ENST00000570163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.71912	2.8037400000000003	2.88836	0.0163125	0.0102432	0.0866586	0.062872
chr2	231080227	231080314	2423272	0	+	0.390805	(0.39,0.42]	chr2	218327	2	CDS	CDS:UTR3:EXON_MRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.71912	2.8037400000000003	2.88836	0.0163125	0.0102432	0.0866586	0.062872
chr3	129431407	129431500	4444560	0	-	0.397849	(0.39,0.42]	chr3	369434	6	UTR3	UTR3:EXON_MRNA	MBD4	ENSG00000129071.10	ENST00000429544.7:ENST00000249910.5:ENST00000393278.6:ENST00000503197.5:ENST00000509828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.71912	2.8037400000000003	2.88836	0.0163125	0.0102432	0.0866586	0.062872
chrX	92676605	92676692	19142689	0	-	0.471264	(0.455,0.49]	chrX	1627986	2	EXON_PSEUDO	EXON_PSEUDO	RPL26P36	ENSG00000225912.1	ENST00000443413.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	43	2	2.59329	2.8036950000000003	3.0141	9.3076e-4	7.86326e-4	0.0111917	0.00929193
chr10	80518673	80518773	11152032	0	+	0.49	(0.455,0.49]	chr10	847928	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.40664	2.8036649999999996	3.20069	0.0123662	0.00285821	0.0705839	0.0245841
chr7	158656259	158656346	9158757	0	-	0.471264	(0.455,0.49]	chr7	699546	1	CDS	CDS:UTR3:EXON_MRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.40664	2.8036649999999996	3.20069	0.0123662	0.00285821	0.0705839	0.0245841
chr1	19174318	19174382	876701	0	-	0.46875	(0.455,0.49]	chr1	90311	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.12994	2.803325	3.47671	0.0368644	0.0304832	0.145024	0.130204
chr1	156334734	156334775	1314292	0	-	0.463415	(0.455,0.49]	chr1	133462	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.12994	2.803325	3.47671	0.0368644	0.0304832	0.145024	0.130204
chr12	124912595	124912693	13601227	0	-	0.530612	(0.53,0.59]	chr12	1071773	9	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	UBC	ENSG00000150991.15	ENST00000536769.1:ENST00000538617.5:ENST00000339647.6:ENST00000546120.2	protein_coding	protein_coding	protein_coding	protein_coding	33	275	2	2.45198	2.8031699999999997	3.15436	2.00319e-5	6.57295e-8	4.87771e-4	4.32005e-6
chr1	215620717	215620816	714005	0	+	0.212121	[0,0.29]	chr1	72144	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000495537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	11	2	1.94841	2.8031550000000003	3.6579	0.0427374	0.0197988	0.168094	0.0983378
chr5	132642364	132642455	6225643	0	+	0.274725	[0,0.29]	chr5	484564	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AC116366.7:RAD50	ENSG00000283782.2:ENSG00000113522.14	ENST00000638452.2:ENST00000638568.2:ENST00000639899.1:ENST00000638504.1:ENST00000640655.2:ENST00000533482.5:ENST00000378823.8:ENST00000651249.1:ENST00000455677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	11	2	1.94841	2.8031550000000003	3.6579	0.0427374	0.0197988	0.168094	0.0983378
chr9	33112580	33112677	10631577	0	-	0.278351	[0,0.29]	chr9	803436	21	UTR3	UTR3:EXON_MRNA:INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	1.94841	2.8031550000000003	3.6579	0.0427374	0.0197988	0.168094	0.0983378
chr1	247877771	247877869	816532	0	+	0.306122	(0.29,0.33]	chr1	80729	14	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.34203	2.8031249999999996	3.26422	0.010113	2.56761e-4	0.0626311	0.00385453
chr7	152135303	152135398	9134878	0	-	0.326316	(0.29,0.33]	chr7	698305	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	28	2	2.34203	2.8031249999999996	3.26422	0.010113	2.56761e-4	0.0626311	0.00385453
chr1	11082782	11082878	859318	0	-	0.416667	(0.39,0.42]	chr1	86860	2	CDS	CDS:EXON_MRNA	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.74243	2.803055	2.86368	0.0101619	0.00369167	0.0627153	0.030936
chr2	47160280	47160379	2631439	0	-	0.353535	(0.33,0.36]	chr2	236916	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	58	2	2.65435	2.80293	2.95151	2.76228e-4	2.74768e-5	0.00409115	6.97601e-4
chr1	11023624	11023723	42057	0	+	0.323232	(0.29,0.33]	chr1	5026	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	46	2	2.64481	2.8028500000000003	2.96089	5.56633e-4	1.57288e-4	0.0076748	0.00260854
chr2	172586332	172586388	2213199	0	+	0.553571	(0.53,0.59]	chr2	202536	2	CDS	CDS:EXON_MRNA	PDK1	ENSG00000152256.14	ENST00000392571.6:ENST00000410055.5:ENST00000282077.8:ENST00000466437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	1.60161	2.80277	4.00393	0.0451605	0.0108084	0.167576	0.064368
chr8	11821795	11821878	9201892	0	+	0.506024	(0.49,0.53]	chr8	703036	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	81	2	2.17584	2.80269	3.42954	0.00105489	2.20894e-4	0.0123035	0.0034106
chr1	39034496	39034566	145859	0	+	0.485714	(0.455,0.49]	chr1	18094	1	UTR3	UTR3:EXON_MRNA	NDUFS5	ENSG00000168653.11	ENST00000372967.3:ENST00000372969.8	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.30139	2.8026150000000003	3.30384	0.0530131	0.00184955	0.195536	0.0178046
chr9	136850847	136850935	10513319	0	+	0.715909	(0.59,1]	chr9	796515	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHPT1	ENSG00000054148.18	ENST00000371661.5:ENST00000492540.5:ENST00000247665.12:ENST00000462205.5:ENST00000497413.1:ENST00000463215.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.68392	2.802445	2.92097	0.0202468	0.0102634	0.0984041	0.0628742
chr6	47625108	47625206	7171955	0	+	0.295918	(0.29,0.33]	chr6	554515	10	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.7441	2.802345	2.86059	0.00173745	5.48907e-4	0.0179204	0.00697672
chr1	154962767	154962861	1306094	0	-	0.308511	(0.29,0.33]	chr1	131616	6	UTR3	UTR3:EXON_MRNA:INTRON	PYGO2:SHC1	ENSG00000163348.4:ENSG00000160691.19	ENST00000483463.1:ENST00000368453.8:ENST00000368450.5:ENST00000448116.7:ENST00000368449.8:ENST00000368445.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.67277	2.8023350000000002	2.9319	0.0255386	0.00145571	0.117089	0.0148357
chr18	31830267	31830364	17060762	0	-	0.329897	(0.29,0.33]	chr18	1402106	12	UTR3	UTR3:EXON_MRNA	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.67277	2.8023350000000002	2.9319	0.0255386	0.00145571	0.117089	0.0148357
chr21	43756162	43756261	18136159	0	+	0.393939	(0.39,0.42]	chr21	1538360	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000467908.1:ENST00000343528.10:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.48908	2.802285	3.11549	0.0101318	0.00403491	0.0626311	0.032143
chr12	6538306	6538374	12713629	0	+	0.544118	(0.53,0.59]	chr12	986667	3	UTR3	UTR3:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	79	2	2.75178	2.80226	2.85274	8.47358e-4	3.70974e-5	0.0104407	8.06532e-4
chr5	179836435	179836493	6415300	0	+	0.603448	(0.59,1]	chr5	499337	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	8	125	2	2.53543	2.8022549999999997	3.06908	0.00300931	3.96328e-5	0.026728	8.539e-4
chr10	811945	812043	11337476	0	-	0.469388	(0.455,0.49]	chr10	864510	26	UTR3	UTR3:EXON_MRNA:INTRON	LARP4B	ENSG00000107929.15	ENST00000614908.4:ENST00000316157.8:ENST00000609318.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.35515	2.80214	3.24913	0.0140117	0.00239443	0.0767536	0.0225356
chr18	3277764	3277837	16729913	0	+	0.493151	(0.49,0.53]	chr18	1380134	1	CDS	CDS:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	10	81	2	1.92426	2.802045	3.67983	0.00714643	4.72644e-7	0.0483104	2.10391e-5
chr8	73291043	73291143	9888171	0	-	0.44	(0.42,0.455]	chr8	747611	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000487500.2:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000466821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	63	2	2.79182	2.80194	2.81206	2.81794e-4	9.62133e-5	0.00451339	0.00175267
chr14	49374048	49374132	14275425	0	+	0.52381	(0.49,0.53]	chr14	1115843	2	EXON_PSEUDO	EXON_PSEUDO	ATP5MC2P2	ENSG00000258401.1	ENST00000554200.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.48488	2.8019	3.11892	0.032052	0.00398244	0.133433	0.0322851
chr19	14515548	14515646	17480910	0	-	0.510204	(0.49,0.53]	chr19	1464580	9	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.48488	2.8019	3.11892	0.032052	0.00398244	0.133433	0.0322851
chr2	85321181	85321280	2770122	0	-	0.424242	(0.42,0.455]	chr2	245643	33	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.97508	2.8018199999999998	3.62856	0.0147202	4.02604e-4	0.0802571	0.00549837
chr11	320650	320731	12225834	0	-	0.703704	(0.59,1]	chr11	943149	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4:ENST00000681748.1:ENST00000680622.1:ENST00000681184.1:ENST00000680720.1:ENST00000679792.1:ENST00000679441.1:ENST00000679433.1:ENST00000680023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	8	121	2	2.59364	2.8016050000000003	3.00957	0.0010223	1.35276e-4	0.0113689	0.0025037
chr11	62567463	62567528	12409089	0	-	0.523077	(0.49,0.53]	chr11	960957	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	EEF1G:RP11-864I4.1:MIR6747	ENSG00000254772.10:ENSG00000255508.7:ENSG00000276102.1	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000617193.1:ENST00000524420.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	28	199	2	2.55276	2.8014799999999997	3.0502	1.10982e-5	2.94139e-7	3.29934e-4	1.40903e-5
chr7	100090591	100090654	8425349	0	+	0.492063	(0.49,0.53]	chr7	642462	1	CDS	CDS:EXON_MRNA	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000468499.5:ENST00000496358.1:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.56183	2.80145	3.04107	0.0261296	0.00533879	0.118976	0.0392268
chr9	15510116	15510188	10585786	0	-	0.5	(0.49,0.53]	chr9	801280	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9:ENST00000380716.8:ENST00000380715.5:ENST00000397519.6:ENST00000487363.5:ENST00000463712.6:ENST00000488797.1:ENST00000484265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.56183	2.80145	3.04107	0.0261296	0.00533879	0.118976	0.0392268
chr1	32775238	32775330	923466	0	-	0.413043	(0.39,0.42]	chr1	97310	1	UTR3	UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	52	2	2.62131	2.8014349999999997	2.98156	0.00609677	3.09196e-5	0.0439136	6.92426e-4
chr6	24701515	24701615	7094877	0	+	0.43	(0.42,0.455]	chr6	542176	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ACOT13	ENSG00000112304.11	ENST00000537591.5:ENST00000230048.5:ENST00000476436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.22933	2.80131	3.37329	0.0102262	0.00136107	0.062872	0.0141115
chr2	151455070	151455159	2134717	0	+	0.325843	(0.29,0.33]	chr2	197794	3	CDS	CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.28605	2.80129	3.31653	0.00261621	0.00224889	0.0238929	0.0207945
chr17	63752037	63752107	16634721	0	-	0.428571	(0.42,0.455]	chr17	1367568	2	CDS	CDS:EXON_MRNA	RP11-51F16.8:CCDC47	ENSG00000125695.12:ENSG00000108588.14	ENST00000580553.1:ENST00000225726.10:ENST00000403162.7:ENST00000612558.4:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.07474	2.800665	3.52659	0.0338882	6.87022e-4	0.139841	0.00876781
chr21	31666448	31666518	18093467	0	+	0.5	(0.49,0.53]	chr21	1533890	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	98	2	2.67649	2.80063	2.92477	2.28191e-4	6.35629e-6	0.00379211	1.89328e-4
chr1	29119067	29119165	121640	0	+	0.469388	(0.455,0.49]	chr1	14751	24	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	52	2	2.35793	2.800395	3.24286	8.03861e-4	2.77105e-4	0.00944667	0.00444204
chr8	47966333	47966407	9316174	0	+	0.608108	(0.59,1]	chr8	713541	3	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	48	2	2.6115	2.80031	2.9891200000000002	0.00823979	0.00584247	0.0540283	0.0422426
chr3	155936423	155936510	3824646	0	+	0.436782	(0.42,0.455]	chr3	326231	2	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.03532	2.80023	3.56514	0.040947	3.86623e-5	0.163285	8.37229e-4
chr1	150810866	150810962	1290605	0	-	0.40625	(0.39,0.42]	chr1	128516	13	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	1.99911	2.80021	3.60131	0.0477207	4.60576e-4	0.17993	0.00611208
chr4	128272361	128272398	5639370	0	-	0.405405	(0.39,0.42]	chr4	449287	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1:ENST00000509070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	1.99911	2.80021	3.60131	0.0477207	4.60576e-4	0.17993	0.00611208
chr6	158771325	158771407	8043954	0	-	0.487805	(0.455,0.49]	chr6	614929	2	CDS	CDS:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.22282	2.800115	3.37741	0.00483628	1.27402e-4	0.0366328	0.00241206
chr8	98045346	98045367	9962862	0	-	0.571429	(0.53,0.59]	chr8	751719	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1:ENST00000520998.1:ENST00000521112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	67	2	2.56002	2.80011	3.0402	0.00634904	2.1584e-5	0.0446708	5.15243e-4
chr1	15935368	15935468	71890	0	+	0.6	(0.59,1]	chr1	8104	74	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.42381	2.799985	3.17616	0.00452614	0.00434232	0.0346018	0.0339139
chr17	58089378	58089477	16287294	0	+	0.434343	(0.42,0.455]	chr17	1320910	2	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	1.68865	2.79981	3.91097	0.0276098	8.75299e-5	0.124664	0.0016272
chr21	44851267	44851366	18277424	0	-	0.424242	(0.42,0.455]	chr21	1550248	18	UTR3	UTR3:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8	protein_coding	protein_coding	protein_coding	protein_coding	13	76	2	2.05544	2.799695	3.54395	0.00109516	6.53258e-6	0.0119554	2.12139e-4
chr7	139284283	139284380	8565209	0	+	0.453608	(0.42,0.455]	chr7	653564	14	CDS	CDS:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.54043	2.7996600000000003	3.05889	0.00705852	0.00524205	0.047732	0.0399155
chr3	197783505	197783605	3991882	0	+	0.34	(0.33,0.36]	chr3	336452	17	UTR3	UTR3:EXON_MRNA	FYTTD1	ENSG00000122068.13	ENST00000241502.9	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.93923	2.799575	3.65992	0.0142064	3.45596e-4	0.0777259	0.00486237
chr5	14652932	14653031	6462540	0	-	0.464646	(0.455,0.49]	chr5	502940	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	80	2	2.35859	2.79936	3.24013	1.6721e-4	5.30989e-5	0.00272473	0.00118379
chr1	109092889	109092985	396850	0	+	0.458333	(0.455,0.49]	chr1	38412	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1:ENST00000479160.1:ENST00000473828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.50904	2.799325	3.08961	0.0310515	0.00445157	0.131262	0.0340751
chr1	229527228	229527308	1542627	0	-	0.475	(0.455,0.49]	chr1	154536	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ABCB10	ENSG00000135776.5	ENST00000344517.5:ENST00000486755.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.50904	2.799325	3.08961	0.0310515	0.00445157	0.131262	0.0340751
chr12	6975709	6975809	12716000	0	+	0.49	(0.455,0.49]	chr12	987462	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	EMG1	ENSG00000126749.16	ENST00000599672.6:ENST00000607161.5:ENST00000261406.7:ENST00000539196.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.50904	2.799325	3.08961	0.0310515	0.00445157	0.131262	0.0340751
chr12	56615211	56615310	13351879	0	-	0.464646	(0.455,0.49]	chr12	1051701	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551959.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.50904	2.799325	3.08961	0.0310515	0.00445157	0.131262	0.0340751
chr9	136832261	136832339	10513142	0	+	0.487179	(0.455,0.49]	chr9	796452	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5:ENST00000466096.5:ENST00000461992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.50904	2.799325	3.08961	0.0310515	0.00445157	0.131262	0.0340751
chr1	225921551	225921644	1531297	0	-	0.612903	(0.59,1]	chr1	153177	1	CDS	CDS:EXON_MRNA:PRIMIRNA	RP4-559A3.7:PYCR2:MIR6741	ENSG00000255835.1:ENSG00000143811.19:ENSG00000284519.1	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000466127.1:ENST00000446534.1:ENST00000618782.1:ENST00000489681.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	7	98	2	2.39609	2.799235	3.20238	0.00154869	4.79306e-4	0.0164839	0.00629006
chr1	6532660	6532760	845113	0	-	0.52	(0.49,0.53]	chr1	85330	3	CDS	CDS:EXON_MRNA	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1:ENST00000462798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	51	2	2.4971	2.7991	3.1011	6.41492e-4	5.69237e-4	0.00796686	0.00778538
chr10	7797046	7797112	10915946	0	+	0.393939	(0.39,0.42]	chr10	831319	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6:ENST00000472202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	46	2	2.55985	2.798895	3.03794	0.00115425	1.79125e-4	0.0130851	0.00289872
chr10	46012882	46012954	11470999	0	-	0.555556	(0.53,0.59]	chr10	874849	1	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	10	88	2	2.4751	2.798465	3.12183	7.16255e-4	1.21728e-5	0.00901405	3.23744e-4
chr2	174081993	174082064	3020381	0	-	0.43662	(0.42,0.455]	chr2	267429	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	37	2	2.15137	2.7983700000000002	3.44537	0.0123864	8.6897e-5	0.07101	0.00177086
chr21	33909081	33909146	18224320	0	-	0.430769	(0.42,0.455]	chr21	1546663	1	CDS	CDS:EXON_MRNA:INTRON	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000418933.1:ENST00000495005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	72	2	2.32669	2.7983450000000003	3.27	6.01851e-4	1.15661e-5	0.00753004	3.41751e-4
chr5	154815265	154815363	6315023	0	+	0.602041	(0.59,1]	chr5	492515	13	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	13	162	2	2.14879	2.798325	3.44786	0.00101994	3.35732e-5	0.0113451	8.21909e-4
chr21	33539170	33539215	18220704	0	-	0.488889	(0.455,0.49]	chr21	1546428	1	CDS	CDS:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.52734	2.79824	3.06914	0.00792433	6.6649e-4	0.0523592	0.00820018
chr12	56271891	56271990	13349836	0	-	0.434343	(0.42,0.455]	chr12	1051002	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	110	2	2.55809	2.79819	3.03829	3.03839e-5	9.46623e-6	6.82092e-4	2.90173e-4
chr3	129315713	129315802	4444059	0	-	0.573034	(0.53,0.59]	chr3	369340	5	CDS	CDS:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.20093	2.797545	3.39416	0.00507963	0.00126006	0.037544	0.013837
chr6	99516083	99516182	7858750	0	-	0.454545	(0.42,0.455]	chr6	601929	7	INTRON	INTRON	USP45	ENSG00000123552.18	ENST00000508908.1	protein_coding	protein_coding	protein_coding	protein_coding	16	117	2	2.27666	2.79744	3.31822	5.94632e-4	2.40239e-7	0.00805151	1.18366e-5
chr1	9929029	9929127	856296	0	-	0.469388	(0.455,0.49]	chr1	86387	29	UTR3	UTR3:EXON_MRNA:INTRON	LZIC	ENSG00000162441.12	ENST00000488540.5:ENST00000377223.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.46624	2.797335	3.12843	0.0094145	0.00392855	0.0592633	0.0322851
chrX	120163610	120163687	18843940	0	+	0.584416	(0.53,0.59]	chrX	1605749	3	CDS	CDS:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	8	68	2	2.46269	2.797335	3.13198	7.66631e-4	1.01201e-4	0.00915627	0.00198127
chr19	38379322	38379405	17320724	0	+	0.554217	(0.53,0.59]	chr19	1433566	2	CDS	CDS:EXON_MRNA:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000591216.1:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5:ENST00000591250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	1.78852	2.79731	3.8061	0.0249781	8.37944e-6	0.116495	2.38248e-4
chr1	201135464	201135563	1446496	0	-	0.40404	(0.39,0.42]	chr1	145188	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.49701	2.797185	3.09736	0.0339607	5.79886e-4	0.141431	0.00734771
chr7	77627480	77627577	8350216	0	+	0.412371	(0.39,0.42]	chr7	637034	9	CDS	CDS:EXON_MRNA	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000407343.3	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.49701	2.797185	3.09736	0.0339607	5.79886e-4	0.141431	0.00734771
chr17	16217547	16217609	16140422	0	+	0.5	(0.49,0.53]	chr17	1300557	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PIGL	ENSG00000108474.17	ENST00000607144.4:ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000470116.2:ENST00000585034.5:ENST00000477745.5:ENST00000489009.1:ENST00000463810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.38097	2.7970699999999997	3.21317	0.0425419	3.08783e-4	0.167547	0.00445935
chr10	73771967	73772064	11115890	0	+	0.587629	(0.53,0.59]	chr10	845933	10	UTR3	UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	46	2	2.30988	2.79705	3.28422	0.00643853	2.10061e-4	0.0452349	0.00327655
chr5	10260851	10260911	5874626	0	+	0.5	(0.49,0.53]	chr5	461876	2	CDS	CDS:UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000515676.5:ENST00000506600.1:ENST00000509846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	80	2	2.67195	2.796735	2.92152	1.16526e-4	6.78233e-5	0.00222174	0.00131721
chr12	4300998	4301097	12704453	0	+	0.535354	(0.53,0.59]	chr12	985544	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	41	2	2.37402	2.796715	3.21941	0.00266171	0.00230837	0.0240332	0.0211205
chr5	69168172	69168257	6019272	0	+	0.411765	(0.39,0.42]	chr5	471227	1	CDS	CDS:UTR3:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	52	2	2.76711	2.79651	2.82591	3.61954e-4	2.09867e-4	0.00544764	0.00327655
chr17	32350285	32350326	16200430	0	+	0.560976	(0.53,0.59]	chr17	1308126	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	RP11-227G15.3:MIR632:ZNF207	ENSG00000265794.5:ENSG00000283774.1:ENSG00000010244.19	ENST00000581915.5:ENST00000578389.1:ENST00000385193.1:ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:primary_miRNA	3	20	2	1.76849	2.79628	3.82407	0.0420665	0.0179666	0.158792	0.0918323
chr8	47962944	47963040	9316138	0	+	0.322917	(0.29,0.33]	chr8	713529	1	CDS	CDS:UTR3:EXON_MRNA	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000519170.1:ENST00000519138.1:ENST00000647877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	61	2	2.43001	2.796195	3.16238	0.00181907	3.59421e-6	0.0183913	1.17346e-4
chr5	140243505	140243600	6253241	0	+	0.4	(0.39,0.42]	chr5	487354	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	49	2	2.22707	2.79615	3.36523	0.00574688	2.21919e-5	0.0426551	5.28886e-4
chr16	69698040	69698139	15725339	0	+	0.383838	(0.36,0.39]	chr16	1252140	18	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	2.09786	2.7961349999999996	3.49441	0.00658605	7.81559e-4	0.0454205	0.00927662
chr11	812442	812534	11758938	0	+	0.576087	(0.53,0.59]	chr11	898486	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPLP2	ENSG00000177600.9	ENST00000532004.5:ENST00000321153.9:ENST00000530797.5:ENST00000530398.1:ENST00000526222.5:ENST00000525722.1:ENST00000527517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	1.97928	2.79611	3.61294	0.0310038	0.0218546	0.130016	0.104785
chr5	69592098	69592198	6021996	0	+	0.41	(0.39,0.42]	chr5	471725	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GTF2H2C	ENSG00000183474.16	ENST00000380729.8:ENST00000510979.5:ENST00000514162.5:ENST00000446221.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.54172	2.79601	3.0503	0.00570576	0.00247353	0.0424438	0.0223024
chr4	77066262	77066362	5479362	0	-	0.44	(0.42,0.455]	chr4	439290	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000513774.1:ENST00000507788.2:ENST00000515790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	59	2	2.14614	2.7957549999999998	3.44537	0.00115993	8.6897e-5	0.0126091	0.00177086
chrX	55009260	55009341	19084555	0	-	0.62963	(0.59,1]	chrX	1623730	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	11	131	2	2.15909	2.79575	3.43241	0.00119781	1.69745e-4	0.0128757	0.00299149
chr7	92610376	92610475	8924943	0	-	0.333333	(0.33,0.36]	chr7	681136	56	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.33322	2.7957099999999997	3.2582	0.00451613	0.00230915	0.0350603	0.0211205
chr12	111598858	111598934	13541342	0	-	0.75	(0.59,1]	chr12	1065395	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000549455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	127	2	1.38314	2.795705	4.20827	0.0378267	1.67518e-6	0.154319	6.16435e-5
chr21	29344685	29344783	18090063	0	+	0.234694	[0,0.29]	chr21	1533713	20	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.40395	2.795655	3.18736	0.0210081	2.21678e-5	0.101116	5.28492e-4
chr6	27893149	27893185	7649683	0	-	0.472222	(0.455,0.49]	chr6	582849	1	UTR5	UTR5:EXON_MRNA	H2AC17	ENSG00000278677.2	ENST00000359611.4	protein_coding	protein_coding	protein_coding	protein_coding	11	69	2	1.8796	2.795595	3.71159	0.00468325	1.77461e-6	0.0357458	7.17655e-5
chr3	25606042	25606122	4093098	0	-	0.325	(0.29,0.33]	chr3	342063	1	CDS	CDS:UTR3:EXON_MRNA	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	2.27431	2.79542	3.31653	0.00432139	0.00261621	0.0335176	0.0238929
chr1	154957511	154957609	1306034	0	-	0.479592	(0.455,0.49]	chr1	131596	6	UTR3	UTR3:EXON_MRNA	PYGO2	ENSG00000163348.4	ENST00000368457.3	protein_coding	protein_coding	protein_coding	protein_coding	9	54	2	2.09777	2.795415	3.49306	0.0022782	6.07633e-5	0.0216337	0.00121305
chr11	66625380	66625479	11991341	0	+	0.626263	(0.59,1]	chr11	922178	12	CDS	CDS:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	58	2	2.34108	2.7954	3.24972	0.00648714	0.00314037	0.0454205	0.0264943
chr1	46285520	46285618	981890	0	-	0.5	(0.49,0.53]	chr1	103528	3	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000617760.4:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.72252	2.7953099999999997	2.8681	0.0161474	0.00175299	0.0860154	0.0171299
chr11	45965314	45965412	12379126	0	-	0.520408	(0.49,0.53]	chr11	955643	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PHF21A	ENSG00000135365.16	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000418153.6:ENST00000527753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	27	2	2.72252	2.7953099999999997	2.8681	0.0161474	0.00175299	0.0860154	0.0171299
chr9	120869685	120869785	10834285	0	-	0.57	(0.53,0.59]	chr9	820584	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	1.97928	2.795305	3.61133	0.0218546	4.55298e-4	0.104785	0.00608573
chr10	32901569	32901635	11443889	0	-	0.393939	(0.39,0.42]	chr10	872612	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	47	2	1.74181	2.795245	3.84868	0.0245629	5.68075e-6	0.114841	1.72325e-4
chrX	153693960	153694017	18915624	0	+	0.578947	(0.53,0.59]	chrX	1611190	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1:ENST00000457723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	102	2	2.20351	2.7950749999999998	3.38664	6.08813e-4	5.10107e-6	0.00818575	1.57702e-4
chr19	3982947	3983018	17430251	0	-	0.633803	(0.59,1]	chr19	1454729	3	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	11	167	2	1.80537	2.794995	3.78462	0.00991402	1.01238e-6	0.0620511	4.03248e-5
chr9	112224132	112224210	10802926	0	-	0.384615	(0.36,0.39]	chr9	818415	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	11	84	2	1.76426	2.794895	3.82553	0.0178361	3.12522e-8	0.0918323	2.06541e-6
chr14	22770460	22770542	14174771	0	+	0.548781	(0.53,0.59]	chr14	1110326	1	CDS	CDS:UTR3:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000473744.5:ENST00000442110.6:ENST00000431881.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	38	2	2.78899	2.794795	2.8006	0.00245784	0.00233666	0.0221765	0.0221314
chr6	26199046	26199143	7647224	0	-	0.670103	(0.59,1]	chr6	582553	2	CDS	CDS:EXON_MRNA	RP1-34B20.21:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	173	2	2.43331	2.794735	3.15616	5.15628e-4	2.76133e-5	0.00667434	7.00301e-4
chr3	196347760	196347859	4664942	0	-	0.555556	(0.53,0.59]	chr3	385869	2	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	1.90953	2.79473	3.67993	0.0517711	3.22778e-4	0.193577	0.0046122
chr1	183545024	183545120	597933	0	+	0.552083	(0.53,0.59]	chr1	62098	2	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	10	72	2	2.09777	2.79468	3.49159	0.00149818	6.29049e-5	0.0152367	0.00135218
chr12	111485788	111485865	13540187	0	-	0.545455	(0.53,0.59]	chr12	1065296	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1:ENST00000552323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	35	2	2.36991	2.79466	3.21941	0.00501452	0.00266171	0.0370872	0.0240332
chr22	23894382	23894474	18309766	0	+	0.684783	(0.59,1]	chr22	1555575	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	AP000350.10:MIF	ENSG00000251357.4:ENSG00000240972.2	ENST00000433835.3:ENST00000215754.8:ENST00000465752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	129	2	2.24047	2.794645	3.34882	0.00487097	1.97552e-5	0.0366486	5.29643e-4
chr18	8918733	8918830	16750746	0	+	0.515464	(0.49,0.53]	chr18	1381318	21	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	10	76	2	2.06004	2.79437	3.5287	0.00373365	1.54299e-6	0.0303255	6.34179e-5
chr1	155289587	155289685	1307526	0	-	0.571429	(0.53,0.59]	chr1	132189	4	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.65894	2.7942799999999997	2.92962	0.0193255	0.0012954	0.0943643	0.0136936
chr12	132769411	132769511	13624688	0	-	0.59	(0.53,0.59]	chr12	1073451	6	UTR3	UTR3:EXON_MRNA	GOLGA3	ENSG00000090615.15	ENST00000204726.8:ENST00000450791.7	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.65894	2.7942799999999997	2.92962	0.0193255	0.0012954	0.0943643	0.0136936
chr5	1814415	1814493	5852792	0	+	0.564103	(0.53,0.59]	chr5	460315	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDUFS6	ENSG00000145494.12	ENST00000274137.10:ENST00000469176.1	protein_coding	protein_coding	protein_coding	protein_coding	3	31	2	2.65894	2.7942799999999997	2.92962	0.0193255	0.0012954	0.0943643	0.0136936
chr2	199272016	199272113	3114512	0	-	0.319588	(0.29,0.33]	chr2	274929	27	UTR3	UTR3:EXON_MRNA	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.73178	2.7941700000000003	2.85656	0.00360855	9.79425e-4	0.0296421	0.0116574
chr7	874745	874839	8093925	0	+	0.297872	(0.29,0.33]	chr7	618494	16	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	2.73178	2.7941700000000003	2.85656	0.00360855	9.79425e-4	0.0296421	0.0116574
chr19	17861292	17861361	17255692	0	+	0.652174	(0.59,1]	chr19	1424750	1	CDS	CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000602216.1:ENST00000597648.5:ENST00000599870.1:ENST00000600238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	282	2	2.32825	2.794165	3.26008	1.50085e-4	7.72621e-6	0.00250379	2.43421e-4
chr19	1611222	1611319	17419520	0	-	0.402062	(0.39,0.42]	chr19	1452654	21	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000592395.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000587425.5:ENST00000585731.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1:ENST00000395423.7:ENST00000585855.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	57	2	2.31773	2.794045	3.27036	0.00382583	1.09752e-5	0.0319415	2.97332e-4
chr9	129827579	129827676	10867776	0	-	0.237113	[0,0.29]	chr9	824293	4	UTR3	UTR3:EXON_MRNA	C9orf78	ENSG00000136819.15	ENST00000372447.7	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.88543	2.7939749999999997	3.70252	0.0226603	2.87026e-4	0.10742	0.00422471
chr1	154251566	154251653	479946	0	+	0.586207	(0.53,0.59]	chr1	49665	2	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	2.47	2.793895	3.11779	0.0089333	5.11883e-4	0.0567495	0.00664583
chr21	31668754	31668842	18093494	0	+	0.295455	(0.29,0.33]	chr21	1533904	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	40	2	2.50482	2.7932550000000003	3.08169	0.00114594	3.79959e-4	0.0130468	0.00527038
chr2	189923135	189923235	2274543	0	+	0.5	(0.49,0.53]	chr2	206587	430	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000478197.1:ENST00000495546.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	59	2	2.39164	2.793235	3.19483	0.00116644	6.77168e-5	0.0131312	0.0013157
chr14	55651583	55651634	14300325	0	+	0.411765	(0.39,0.42]	chr14	1117830	2	EXON_SMALL	EXON_SMALL:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KTN1:Y_RNA	ENSG00000126777.18:ENSG00000200742.1	ENST00000395314.8:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5:ENST00000395311.5:ENST00000413890.6:ENST00000395309.7:ENST00000553360.5:ENST00000554507.5:ENST00000554890.1:ENST00000363872.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:nonsense_mediated_decay	4	30	2	2.48908	2.79322	3.09736	0.0101318	5.79886e-4	0.0626311	0.00734771
chr5	149352447	149352544	6290456	0	+	0.309278	(0.29,0.33]	chr5	490713	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GRPEL2	ENSG00000164284.15	ENST00000329271.8:ENST00000507562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	2.63796	2.7932	2.94844	0.00217122	6.9438e-4	0.0208941	0.00846751
chr22	21791386	21791485	18442672	0	-	0.484848	(0.455,0.49]	chr22	1572534	22	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	14	87	2	2.06258	2.793165	3.52375	0.00110413	1.61919e-6	0.0127344	5.99053e-5
chr6	159785408	159785472	8049128	0	-	0.390625	(0.39,0.42]	chr6	615281	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000543532.5:ENST00000538530.5:ENST00000467544.2:ENST00000538128.5:ENST00000543517.5:ENST00000539948.5:ENST00000545764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	49	2	2.5823	2.79303	3.00376	0.00246531	6.87502e-5	0.0230262	0.00133223
chr17	75777609	75777707	16684881	0	-	0.44898	(0.42,0.455]	chr17	1373459	13	UTR3	UTR3:EXON_MRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8	protein_coding	protein_coding	protein_coding	protein_coding	18	122	2	1.84707	2.793005	3.73894	0.0025025	2.59068e-8	0.0233664	1.76222e-6
chr10	72233116	72233214	11111132	0	+	0.55102	(0.53,0.59]	chr10	845348	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC16	ENSG00000166295.9	ENST00000615507.4:ENST00000621663.4:ENST00000299381.5:ENST00000478193.5:ENST00000470481.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	2.35511	2.79298	3.2308500000000002	0.0445399	2.81517e-4	0.172163	0.00415519
chr4	128863044	128863143	5109887	0	+	0.545455	(0.53,0.59]	chr4	414266	9	UTR3	UTR3:EXON_MRNA:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.35511	2.79298	3.2308500000000002	0.0445399	2.81517e-4	0.172163	0.00415519
chr1	1050232	1050329	2386	0	+	0.670103	(0.59,1]	chr1	555	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.53147	2.792935	3.0544	0.00807544	2.52807e-4	0.0531324	0.00381058
chr17	61965097	61965190	16628433	0	-	0.44086	(0.42,0.455]	chr17	1366865	2	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.75179	2.79287	2.83395	8.66526e-4	6.25227e-4	0.0100799	0.00830005
chr17	1661338	1661406	16401389	0	-	0.470588	(0.455,0.49]	chr17	1334884	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573725.1:ENST00000572445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	52	2	2.74211	2.792625	2.84314	0.00330545	7.87569e-5	0.028478	0.00149607
chr11	118505559	118505657	12158971	0	+	0.418367	(0.39,0.42]	chr11	937104	33	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000534085.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	2.02403	2.7925000000000004	3.56097	0.0111868	6.12149e-4	0.0665375	0.00818575
chr14	105979056	105979146	14802396	0	-	0.611111	(0.59,1]	chr14	1160691	7	EXON_PSEUDO	EXON_PSEUDO	AB019441.29	ENSG00000225200.2	ENST00000392301.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	71	2	2.42639	2.792255	3.15812	0.0409084	1.46709e-4	0.163285	0.0024610500000000002
chr1	27406406	27406505	908767	0	-	0.535354	(0.53,0.59]	chr1	95011	23	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.18736	2.792205	3.39705	0.00311033	1.10308e-4	0.0263966	0.00211768
chr6	31635966	31636049	7115912	0	+	0.566265	(0.53,0.59]	chr6	545897	1	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000487089.1:ENST00000487839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	129	2	2.41778	2.7920800000000003	3.16638	1.17473e-4	3.86836e-6	0.00223408	1.25544e-4
chr1	951999	952069	825587	0	-	0.614286	(0.59,1]	chr1	81730	1	CDS	CDS:EXON_MRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	36	2	2.5215	2.79204	3.06258	0.032241	0.00616167	0.135671	0.0438642
chr1	156239865	156239953	486995	0	+	0.613636	(0.59,1]	chr1	51472	4	UTR3	UTR3:EXON_MRNA:INTRON	PMF1-BGLAP:PMF1	ENSG00000260238.6:ENSG00000160783.19	ENST00000490491.5:ENST00000368279.7:ENST00000368276.8:ENST00000368277.3:ENST00000320139.5:ENST00000567140.3	protein_coding	protein_coding	protein_coding	protein_coding	2	36	2	2.5215	2.79204	3.06258	0.032241	0.00616167	0.135671	0.0438642
chr6	31652313	31652393	7661530	0	-	0.6375	(0.59,1]	chr6	584894	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000451898.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	132	2	2.7692	2.7920350000000003	2.81487	4.70656e-4	1.6995e-4	0.00665678	0.00276512
chr3	47587326	47587424	4161754	0	-	0.459184	(0.455,0.49]	chr3	348302	22	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	2.47392	2.79197	3.11002	0.00157443	1.15314e-4	0.016717	0.0020426
chr12	110334077	110334143	13085776	0	+	0.363636	(0.36,0.39]	chr12	1020512	2	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2:ENST00000550262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	46	2	2.02118	2.7918200000000004	3.56246	0.0251625	5.49224e-6	0.117055	1.67232e-4
chr1	201957280	201957380	661719	0	+	0.49	(0.455,0.49]	chr1	66382	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TIMM17A	ENSG00000134375.11	ENST00000367287.5:ENST00000478378.5:ENST00000484647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.22282	2.7916600000000003	3.3605	0.00483628	0.00147278	0.0366328	0.0157578
chr1	113450927	113451027	414367	0	+	0.34	(0.33,0.36]	chr1	40865	3	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	2.00765	2.79162	3.57559	0.0287001	0.0262108	0.128757	0.117079
chr12	110450260	110450337	13537601	0	-	0.688312	(0.59,1]	chr12	1064901	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ARPC3	ENSG00000111229.16	ENST00000228825.12:ENST00000426440.5:ENST00000548878.6:ENST00000471641.1:ENST00000475777.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	57	2	2.06696	2.7915200000000002	3.51608	0.0170848	0.00108676	0.0897702	0.0118659
chr3	53230456	53230510	4189041	0	-	0.518519	(0.49,0.53]	chr3	353796	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	41	2	2.35273	2.791395	3.23006	0.00253719	0.00139962	0.0233955	0.0144327
chr19	6414210	6414300	17442185	0	-	0.655556	(0.59,1]	chr19	1456772	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000597656.5:ENST00000595223.5	protein_coding	protein_coding	protein_coding	protein_coding	11	155	2	2.59346	2.79138	2.9893	2.16651e-4	1.5085e-4	0.00335206	0.00274512
chr16	74305512	74305572	15739427	0	+	0.583333	(0.53,0.59]	chr16	1254006	1	CDS	CDS:UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000563150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.47	2.7913750000000004	3.11275	0.0089333	0.00407571	0.0567495	0.032143
chr3	195784348	195784448	4661110	0	-	0.59	(0.53,0.59]	chr3	385270	57	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.47	2.7913750000000004	3.11275	0.0089333	0.00407571	0.0567495	0.032143
chr7	151213855	151213954	9129917	0	-	0.565657	(0.53,0.59]	chr7	697850	25	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ABCF2-H2BE1:ABCF2	ENSG00000285292.1:ENSG00000033050.9	ENST00000222388.6:ENST00000287844.7	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.47	2.7913750000000004	3.11275	0.0089333	0.00407571	0.0567495	0.032143
chr9	131233453	131233487	10496733	0	+	0.588235	(0.53,0.59]	chr9	793396	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000476004.5:ENST00000528406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.37399	2.791365	3.20874	0.0126178	0.00278422	0.0717599	0.0241009
chr3	196828602	196828700	3990181	0	+	0.428571	(0.42,0.455]	chr3	336202	3	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.47379	2.791265	3.10874	0.00996858	5.40397e-4	0.0621728	0.00688813
chr1	47216681	47216779	985516	0	-	0.316327	(0.29,0.33]	chr1	104046	5	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	2.19551	2.791225	3.38694	0.00356761	2.05464e-5	0.0301227	4.97417e-4
chr9	35700283	35700376	10639474	0	-	0.55914	(0.53,0.59]	chr9	804990	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	8	79	2	2.30988	2.79115	3.27242	0.00643853	4.05412e-6	0.0452349	1.30336e-4
chr1	183528891	183528966	597761	0	+	0.413333	(0.39,0.42]	chr1	62050	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SMG7	ENSG00000116698.21	ENST00000440812.7:ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6:ENST00000507406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.69374	2.7910500000000003	2.88836	0.0102432	0.00386013	0.062872	0.0310764
chr10	95632958	95633049	11633148	0	-	0.395604	(0.39,0.42]	chr10	886052	1	CDS	CDS:EXON_MRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.69374	2.7910500000000003	2.88836	0.0102432	0.00386013	0.062872	0.0310764
chr19	34208989	34209051	17298883	0	+	0.403226	(0.39,0.42]	chr19	1429669	2	CDS	CDS:EXON_MRNA:INTRON	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.69374	2.7910500000000003	2.88836	0.0102432	0.00386013	0.062872	0.0310764
chr6	13787133	13787229	7605984	0	-	0.416667	(0.39,0.42]	chr6	580084	7	UTR3	UTR3:EXON_MRNA	MCUR1	ENSG00000050393.11	ENST00000379170.8:ENST00000607303.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.69374	2.7910500000000003	2.88836	0.0102432	0.00386013	0.062872	0.0310764
chr9	131175459	131175540	10496131	0	+	0.481481	(0.455,0.49]	chr9	793306	1	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	76	2	2.73862	2.79103	2.84344	1.62714e-4	3.77349e-5	0.00290162	8.18363e-4
chr16	2767078	2767177	15494946	0	+	0.636364	(0.59,1]	chr16	1227802	57	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	2.67664	2.790945	2.90525	6.8436e-4	2.35262e-4	0.00836671	0.00387599
chr8	109334323	109334395	9555064	0	+	0.555556	(0.53,0.59]	chr8	725121	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ENY2	ENSG00000120533.13	ENST00000521662.5:ENST00000522766.5:ENST00000517311.5:ENST00000339942.11:ENST00000520147.5:ENST00000519754.5:ENST00000521688.6:ENST00000522407.5:ENST00000522632.1:ENST00000523335.1:ENST00000517756.5:ENST00000518584.5:ENST00000517350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.36244	2.7909249999999997	3.21941	0.0131162	0.00266171	0.073569	0.0240332
chr15	63157405	63157499	15333614	0	-	0.585106	(0.53,0.59]	chr15	1210115	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPS27L	ENSG00000185088.14	ENST00000330964.10:ENST00000635699.1:ENST00000482846.1:ENST00000411926.1:ENST00000439025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.45844	2.79092	3.1234	0.00930921	0.00390623	0.0587563	0.0322851
chr6	34245172	34245268	7124346	0	+	0.645833	(0.59,1]	chr6	548262	4	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	93	1290	2	2.71571	2.790865	2.86602	2.1682e-6	1.168e-6	7.65945e-5	5.0108e-5
chr3	43702508	43702587	3440895	0	+	0.481013	(0.455,0.49]	chr3	299353	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000456453.5:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	32	2	2.09123	2.79078	3.49033	0.00905243	7.92678e-4	0.0574173	0.00933379
chr1	199387998	199388093	651657	0	+	0.452632	(0.42,0.455]	chr1	65292	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC02789:RP11-104D3.2	ENSG00000231718.1:ENSG00000236468.1	ENST00000452199.1:ENST00000430498.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	28	2	2.11785	2.79067	3.46349	0.0154862	9.0025e-4	0.0836691	0.0102618
chr15	78548944	78549043	15040596	0	+	0.383838	(0.36,0.39]	chr15	1183235	1	UTR3	UTR3:EXON_MRNA	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000044462.12:ENST00000560099.5:ENST00000558281.5:ENST00000558341.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	50	2	2.09786	2.7905949999999997	3.48333	0.00658605	9.78237e-6	0.0454205	2.71468e-4
chr4	1692826	1692922	5279941	0	-	0.28125	[0,0.29]	chr4	424978	2	UTR3	UTR3:EXON_MRNA	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.31133	2.79047	3.26961	0.00696038	0.00229774	0.0474632	0.0210664
chr15	78500187	78500284	15040153	0	+	0.453608	(0.42,0.455]	chr15	1183144	22	UTR3	UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.66697	2.79035	2.91373	0.0190326	0.00892357	0.0958835	0.0567495
chr21	14486011	14486062	18163803	0	-	0.45098	(0.42,0.455]	chr21	1542430	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.66697	2.79035	2.91373	0.0190326	0.00892357	0.0958835	0.0567495
chr7	107620263	107620360	8456274	0	+	0.43299	(0.42,0.455]	chr7	646070	18	UTR3	UTR3:EXON_MRNA:INTRON	DUS4L-BCAP29:BCAP29	ENSG00000288558.2:ENSG00000075790.12	ENST00000673689.1:ENST00000673720.1:ENST00000673780.1:ENST00000673709.1:ENST00000673970.1:ENST00000674049.1:ENST00000673992.1:ENST00000673665.1:ENST00000674062.1:ENST00000005259.9:ENST00000482371.5:ENST00000379119.6:ENST00000491150.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.66697	2.79035	2.91373	0.0190326	0.00892357	0.0958835	0.0567495
chr8	20220601	20220700	9220103	0	+	0.40404	(0.39,0.42]	chr8	704735	3	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	31	2	2.25245	2.79028	3.32811	0.00427758	0.00182819	0.0332717	0.0183913
chr2	174075021	174075120	3020304	0	-	0.383838	(0.36,0.39]	chr2	267409	27	UTR3	UTR3:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6	protein_coding	protein_coding	protein_coding	protein_coding	13	74	2	2.59927	2.790245	2.98122	6.90768e-5	4.19033e-5	0.00133649	9.83754e-4
chr1	110947477	110947573	1223679	0	-	0.34375	(0.33,0.36]	chr1	119599	4	UTR3	UTR3:EXON_MRNA	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000494675.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.97842	2.7902	3.60198	0.0469469	6.01238e-4	0.171977	0.00811676
chr6	32169178	32169275	7664651	0	-	0.618557	(0.59,1]	chr6	586094	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	78	2	2.40419	2.7901749999999996	3.17616	0.00434232	0.00139249	0.0339139	0.0143941
chr15	59081022	59081109	14959616	0	+	0.425287	(0.42,0.455]	chr15	1175631	2	CDS	CDS:EXON_MRNA	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000558977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.3893	2.7900400000000003	3.19078	0.00310864	0.00221606	0.0274272	0.0205138
chr5	163437646	163437725	6343357	0	+	0.696203	(0.59,1]	chr5	493978	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	228	2	2.14352	2.79002	3.43652	0.00178234	1.08852e-6	0.0182072	4.30427e-5
chr1	1313814	1313914	827057	0	-	0.55	(0.53,0.59]	chr1	82213	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	INTS11	ENSG00000127054.21	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000618806.4:ENST00000470030.6:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000478641.5:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000485710.5:ENST00000528879.5:ENST00000531377.5:ENST00000527383.5:ENST00000531292.5:ENST00000467408.6:ENST00000434694.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	30	2	2.0404	2.78985	3.5393	0.0362529	6.46017e-4	0.148525	0.00799743
chr3	184243790	184243858	4622934	0	-	0.632353	(0.59,1]	chr3	381725	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALG3	ENSG00000214160.10	ENST00000397676.8:ENST00000411922.5:ENST00000445626.6:ENST00000455059.5:ENST00000446569.1:ENST00000414845.5:ENST00000463495.5:ENST00000462735.6:ENST00000423996.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	71	2	2.03921	2.78982	3.54043	0.0371471	8.66186e-5	0.151849	0.00161378
chr2	41820112	41820204	1759267	0	+	0.402174	(0.39,0.42]	chr2	170657	5	EXON_PSEUDO	EXON_PSEUDO	LDHAP3	ENSG00000236090.2	ENST00000448312.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	64	2	2.4030300000000002	2.789725	3.17642	0.00255585	7.53971e-6	0.0234576	2.18133e-4
chr7	92614345	92614444	8924983	0	-	0.292929	(0.29,0.33]	chr7	681136	96	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.7441	2.789705	2.83531	0.00228447	0.00173745	0.0209856	0.0179204
chr12	98534540	98534640	13036723	0	+	0.31	(0.29,0.33]	chr12	1014956	3	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.24226	2.78967	3.33708	0.0306054	2.90171e-5	0.130226	6.60417e-4
chr5	168548892	168548992	6968906	0	-	0.33	(0.29,0.33]	chr5	532791	5	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	2.48886	2.78957	3.09028	0.0055888	1.51718e-5	0.0419759	3.8775e-4
chr7	12357431	12357515	8683234	0	-	0.416667	(0.39,0.42]	chr7	663979	3	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.38313	2.789505	3.19588	0.0128066	0.00321212	0.0725185	0.0280721
chr19	6440947	6441046	17442466	0	-	0.535354	(0.53,0.59]	chr19	1456911	10	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	2.78899	2.789395	2.7898	0.0128364	0.00245784	0.0719798	0.0221765
chr1	35444231	35444303	937051	0	-	0.472222	(0.455,0.49]	chr1	98558	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000373266.8:ENST00000426982.6:ENST00000485551.5:ENST00000473844.1:ENST00000474856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	2.27492	2.78938	3.30384	0.0193827	0.00184955	0.0943643	0.0178046
chr15	41380378	41380474	14886251	0	+	0.34375	(0.33,0.36]	chr15	1169383	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	119	2	2.44513	2.789205	3.13328	2.52438e-5	8.36724e-7	5.85812e-4	3.81758e-5
chr19	2429929	2430027	17423108	0	-	0.459184	(0.455,0.49]	chr19	1453517	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LMNB2	ENSG00000176619.13	ENST00000532465.1:ENST00000325327.4:ENST00000475819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	48	2	1.88914	2.789085	3.68903	0.0127583	1.71879e-5	0.0719798	4.32994e-4
chr18	2693627	2693727	16726858	0	+	0.51	(0.49,0.53]	chr18	1379709	45	INTRON	INTRON	SMCHD1	ENSG00000101596.16	ENST00000320876.11:ENST00000581226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.56183	2.7889999999999997	3.01617	0.0261296	8.62231e-4	0.118976	0.0100487
chr7	127590065	127590137	8514787	0	+	0.527778	(0.49,0.53]	chr7	649577	1	CDS	CDS:EXON_MRNA	ARF5	ENSG00000004059.11	ENST00000463733.5:ENST00000415666.1:ENST00000000233.10:ENST00000489673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.56183	2.7889999999999997	3.01617	0.0261296	8.62231e-4	0.118976	0.0100487
chr21	37441369	37441469	18116674	0	+	0.31	(0.29,0.33]	chr21	1536238	106	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.24226	2.78885	3.33544	0.0306054	0.0016889	0.130226	0.0165476
chr12	120198553	120198638	13579750	0	-	0.505882	(0.49,0.53]	chr12	1068808	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	189	2	2.73165	2.7888450000000002	2.84604	2.71838e-6	2.21181e-6	9.32816e-5	8.61368e-5
chr13	98012245	98012342	13859174	0	+	0.412371	(0.39,0.42]	chr13	1086701	1	CDS	CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.70591	2.78856	2.87121	0.0185716	4.65001e-4	0.0932453	0.00615886
chr1	161470469	161470523	1333901	0	-	0.666667	(0.59,1]	chr1	136941	1	EXON_LNCRNA	EXON_LNCRNA	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	354	5102	2	2.42035	2.78841	3.15647	8.15225e-6	5.17698e-8	2.32938e-4	3.49493e-6
chr22	39017934	39017989	18368440	0	+	0.509091	(0.49,0.53]	chr22	1562843	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	59	2	2.33818	2.7883649999999998	3.23855	0.00154513	5.12488e-5	0.016451	0.00104999
chr11	65429501	65429601	11984638	0	+	0.3	(0.29,0.33]	chr11	920390	55	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	14	68	2	2.71487	2.7883050000000003	2.86174	6.77341e-5	3.17554e-5	0.0014391	7.05797e-4
chr11	65351682	65351759	11984138	0	+	0.493506	(0.49,0.53]	chr11	920299	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.13501	2.788255	3.4415	0.0287874	9.98297e-4	0.128869	0.0111246
chr12	112506622	112506722	13095546	0	+	0.52	(0.49,0.53]	chr12	1021682	9	UTR3	UTR3:EXON_MRNA	PTPN11	ENSG00000179295.18	ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.13501	2.788255	3.4415	0.0287874	9.98297e-4	0.128869	0.0111246
chr17	45099404	45099503	16237701	0	+	0.515152	(0.49,0.53]	chr17	1315011	1	CDS	CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000590310.2:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000590114.6:ENST00000592654.3:ENST00000588455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.13501	2.788255	3.4415	0.0287874	9.98297e-4	0.128869	0.0111246
chr1	201866883	201866959	661400	0	+	0.460526	(0.455,0.49]	chr1	66283	3	CDS	CDS:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.17632	2.788205	3.40009	0.00634339	0.00120619	0.0446708	0.0129255
chr12	65243387	65243469	12928186	0	+	0.341463	(0.33,0.36]	chr12	1007643	1	CDS	CDS:EXON_MRNA	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000542032.1:ENST00000544506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.4164	2.78808	3.15976	0.011989	0.00437542	0.0700473	0.0340502
chr3	10300930	10301017	4032283	0	-	0.344828	(0.33,0.36]	chr3	338571	1	UTR3	UTR3:EXON_MRNA:INTRON	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	19	2	2.4164	2.78808	3.15976	0.011989	0.00437542	0.0700473	0.0340502
chr1	226379996	226380071	1533217	0	-	0.586667	(0.53,0.59]	chr1	153472	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	68	2	2.29749	2.78776	3.2780300000000002	0.00181945	4.08373e-5	0.0183913	8.76332e-4
chr11	618889	618986	12226768	0	-	0.639175	(0.59,1]	chr11	943542	4	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CDHR5	ENSG00000099834.19	ENST00000358353.8:ENST00000397542.7:ENST00000349570.11:ENST00000531177.5:ENST00000674088.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.17889	2.7876950000000003	3.3965	0.025085	1.83913e-4	0.116848	0.00296795
chr12	57229709	57229778	12902088	0	+	0.594203	(0.59,1]	chr12	1005172	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000557740.5:ENST00000554600.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000553324.5:ENST00000553950.5:ENST00000555634.5:ENST00000556689.5:ENST00000557269.5:ENST00000555563.5:ENST00000557433.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	2.65415	2.78756	2.92097	0.0102634	0.00171847	0.0628742	0.0168227
chr20	38129827	38129924	17962929	0	-	0.494845	(0.49,0.53]	chr20	1522305	26	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	2.78723	2.78748	2.78773	0.00257389	7.16432e-4	0.0235767	0.00859467
chr12	108647102	108647202	13530494	0	-	0.28	[0,0.29]	chr12	1063929	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	2.77356	2.7874499999999998	2.80134	0.0049344	9.10413e-4	0.0379087	0.0103519
chr14	35312960	35313059	14225592	0	+	0.393939	(0.39,0.42]	chr14	1113848	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-561B11.2:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554961.5:ENST00000554620.5:ENST00000553809.5:ENST00000555764.5:ENST00000556506.1:ENST00000556221.1:ENST00000554457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.70591	2.7874299999999996	2.86895	0.0185716	0.00177945	0.0932453	0.0172974
chr2	226864693	226864793	2411265	0	+	0.41	(0.39,0.42]	chr2	216818	1	CDS_START	CDS_START:CDS:EXON_MRNA	RHBDD1	ENSG00000144468.17	ENST00000424132.1:ENST00000341329.7:ENST00000437454.5:ENST00000443477.5:ENST00000423616.1:ENST00000392062.7:ENST00000448992.5:ENST00000436481.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.70591	2.7874299999999996	2.86895	0.0185716	0.00177945	0.0932453	0.0172974
chr11	10508326	10508421	12270800	0	-	0.4	(0.39,0.42]	chr11	948737	1	UTR5	UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	163	991	2	2.54325	2.78735	3.03145	1.78203e-7	1.81279e-9	1.03798e-5	1.77605e-7
chr19	43774191	43774276	17580624	0	-	0.705882	(0.59,1]	chr19	1479122	1	CDS	CDS:EXON_MRNA:INTRON	KCNN4	ENSG00000104783.14	ENST00000615047.4:ENST00000648319.1:ENST00000599720.5:ENST00000601549.2:ENST00000599107.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	63	2	2.76006	2.787325	2.81459	0.00330486	0.00278977	0.027613	0.0249234
chr3	101576763	101576855	4331343	0	-	0.532609	(0.53,0.59]	chr3	361271	4	EXON_PSEUDO	EXON_PSEUDO	RP11-234A1.1	ENSG00000242299.1	ENST00000496294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	16	116	2	2.40131	2.787235	3.17316	7.8686e-5	6.11617e-5	0.00164157	0.00122072
chr22	20564528	20564608	18298964	0	+	0.5875	(0.53,0.59]	chr22	1553471	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	61	2	2.66813	2.7872250000000003	2.90632	5.09538e-4	3.72925e-4	0.00662599	0.00559101
chr11	60070919	60071017	11961721	0	+	0.357143	(0.33,0.36]	chr11	915694	8	UTR3	UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000358152.6:ENST00000278865.8:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	43	2	2.42919	2.787195	3.1452	0.00151039	9.8054e-5	0.0160934	0.00177549
chr12	123584636	123584736	13127058	0	+	0.58	(0.53,0.59]	chr12	1025762	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000544188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	38	2	2.64475	2.787185	2.92962	0.00453071	0.0012954	0.0351187	0.0136936
chr15	59124777	59124877	14960001	0	+	0.49	(0.455,0.49]	chr15	1175718	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CCNB2:RP11-59H7.3	ENSG00000157456.8:ENSG00000259732.1	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559026.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	61	2	2.63872	2.7871449999999998	2.93557	0.00510378	1.96038e-5	0.0390492	4.77912e-4
chr1	1050781	1050837	2394	0	+	0.767857	(0.59,1]	chr1	561	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	37	2	2.32455	2.787135	3.24972	0.0520547	0.00314037	0.193787	0.0264943
chr1	84506091	84506189	1130810	0	-	0.795918	(0.59,1]	chr1	112617	1	UTR5	UTR5:EXON_MRNA:INTRON	GNG5:RP11-118B23.9	ENSG00000174021.11:ENSG00000285851.1	ENST00000370645.9:ENST00000370641.3:ENST00000649871.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	79	2	1.71333	2.786965	3.8606	0.0178267	2.2997e-4	0.0918323	0.00352524
chr1	229477678	229477760	1542193	0	-	0.390244	(0.39,0.42]	chr1	154437	2	CDS	CDS:EXON_MRNA	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.37759	2.786735	3.19588	0.0428865	0.00321212	0.161091	0.0280721
chr8	47971404	47971468	9316237	0	+	0.359375	(0.33,0.36]	chr8	713573	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000517709.1:ENST00000648554.1:ENST00000519470.1:ENST00000523853.1:ENST00000518382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.63456	2.7866999999999997	2.93884	0.00707461	0.00135211	0.0478528	0.0140654
chr16	28844779	28844862	15907779	0	-	0.542169	(0.53,0.59]	chr16	1273898	2	CDS	CDS:UTR3:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1:ENST00000561644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	2.56665	2.786695	3.00674	0.00209536	8.9408e-4	0.0196588	0.01086
chr1	22091427	22091517	93078	0	+	0.5	(0.49,0.53]	chr1	10798	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding	9	70	2	2.13458	2.78653	3.43848	0.00409201	3.12402e-6	0.0322679	1.15696e-4
chr1	11923392	11923489	861986	0	-	0.56701	(0.53,0.59]	chr1	87466	9	CDS	CDS:EXON_MRNA	KIAA2013	ENSG00000116685.16	ENST00000376572.8:ENST00000616327.1:ENST00000376576.3	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.515	2.786375	3.05775	0.0292633	6.94592e-4	0.129773	0.00846751
chr12	56611866	56611961	13351839	0	-	0.557895	(0.53,0.59]	chr12	1051683	2	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.515	2.786375	3.05775	0.0292633	6.94592e-4	0.129773	0.00846751
chr17	81935336	81935426	16710151	0	-	0.555556	(0.53,0.59]	chr17	1377918	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6:ENST00000582198.5:ENST00000405481.8:ENST00000585215.5:ENST00000577624.5:ENST00000579698.5:ENST00000579366.5:ENST00000581271.5:ENST00000583564.5:ENST00000585244.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.515	2.786375	3.05775	0.0292633	6.94592e-4	0.129773	0.00846751
chr2	86777745	86777843	1928633	0	+	0.306122	(0.29,0.33]	chr2	181779	45	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.25579	2.78616	3.31653	0.00934624	0.00261621	0.0589275	0.0238929
chr7	87835255	87835354	8913769	0	-	0.292929	(0.29,0.33]	chr7	680337	18	UTR3	UTR3:EXON_MRNA	SLC25A40	ENSG00000075303.13	ENST00000341119.10	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.25579	2.78616	3.31653	0.00934624	0.00261621	0.0589275	0.0238929
chr1	6622334	6622434	19566	0	+	0.43	(0.42,0.455]	chr1	3165	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PHF13	ENSG00000116273.6	ENST00000377648.5:ENST00000495385.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.72071	2.786105	3.8515	0.0499984	0.0119089	0.179758	0.0686664
chr17	81933129	81933213	16710121	0	-	0.607143	(0.59,1]	chr17	1377897	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6	protein_coding	protein_coding	protein_coding	protein_coding	6	73	2	1.53145	2.7859550000000004	4.04046	0.0416919	9.42839e-5	0.165444	0.0017195000000000001
chr11	57387374	57387474	12394215	0	-	0.63	(0.59,1]	chr11	958598	7	UTR3	UTR3:EXON_MRNA	PRG2:RP11-872D17.8	ENSG00000186652.10:ENSG00000254979.5	ENST00000311862.10:ENST00000533605.5:ENST00000525955.1:ENST00000534081.5:ENST00000530105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	107	2	2.3353	2.78595	3.2366	0.00133384	4.06803e-4	0.0144533	0.00552995
chrX	47213085	47213181	18686904	0	+	0.552083	(0.53,0.59]	chrX	1593269	2	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	2.45052	2.785805	3.12109	0.00355092	3.24817e-5	0.0300049	7.18962e-4
chr13	30461158	30461257	13949054	0	-	0.343434	(0.33,0.36]	chr13	1094852	46	UTR3	UTR3:EXON_MRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5	protein_coding	protein_coding	protein_coding	protein_coding	26	128	2	2.76975	2.7857250000000002	2.8017	5.65339e-6	1.60631e-6	1.71644e-4	6.55302e-5
chr22	19479968	19480019	18295356	0	+	0.529412	(0.49,0.53]	chr22	1552719	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.05119	2.7855	3.51981	0.0360743	6.88328e-4	0.145024	0.00876781
chr19	29208072	29208158	17528321	0	-	0.465116	(0.455,0.49]	chr19	1471070	6	CDS	CDS:EXON_MRNA	UQCRFS1	ENSG00000169021.6	ENST00000304863.6	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.71913	2.785425	2.85172	0.010864	0.00103266	0.0643837	0.011478
chrX	40935079	40935177	19047374	0	-	0.540816	(0.53,0.59]	chrX	1619017	2	EXON_PSEUDO	EXON_PSEUDO	RPS2P55	ENSG00000216866.5	ENST00000397318.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	64	2	2.51602	2.78541	3.0548	0.00264912	5.01853e-5	0.024013	0.00103096
chr5	77582841	77582935	6050210	0	+	0.393617	(0.39,0.42]	chr5	474660	6	EXON_PSEUDO	EXON_PSEUDO	RPL7P23	ENSG00000244363.3	ENST00000493874.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	29	2	2.62131	2.78524	2.94917	0.00609677	0.00121791	0.0439136	0.0130188
chr8	93957514	93957602	9957762	0	-	0.5	(0.49,0.53]	chr8	750951	3	EXON_PSEUDO	EXON_PSEUDO	RPL34P18	ENSG00000240509.1	ENST00000466433.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	26	2	2.70307	2.785085	2.8671	0.0100489	0.00363585	0.0623334	0.0298137
chr3	185644665	185644761	4626393	0	-	0.427083	(0.42,0.455]	chr3	382128	17	UTR3	UTR3:EXON_MRNA	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.19674	2.785015	3.37329	0.0254904	0.00136107	0.117089	0.0141115
chr6	166365258	166365343	8077788	0	-	0.317647	(0.29,0.33]	chr6	616694	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPC1	ENSG00000060762.19	ENST00000341756.10:ENST00000621630.1:ENST00000621685.4:ENST00000360961.11:ENST00000487218.5:ENST00000366868.5:ENST00000475708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	23	2	2.63813	2.785015	2.9319	0.00803229	0.00145571	0.0528968	0.0148357
chr11	126068214	126068311	12196035	0	+	0.412371	(0.39,0.42]	chr11	941115	8	EXON_PSEUDO	EXON_PSEUDO	NAP1L1P1	ENSG00000254759.1	ENST00000524793.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	2.70591	2.784795	2.86368	0.0185716	0.0101619	0.0932453	0.0627153
chr17	78992761	78992859	16698184	0	-	0.418367	(0.39,0.42]	chr17	1376272	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CANT1	ENSG00000171302.17	ENST00000392446.10:ENST00000302345.6:ENST00000620915.4:ENST00000592228.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.70591	2.784795	2.86368	0.0185716	0.0101619	0.0932453	0.0627153
chr3	150627034	150627134	3808244	0	+	0.4	(0.39,0.42]	chr3	325099	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SELENOT	ENSG00000198843.13	ENST00000480740.5:ENST00000615547.4:ENST00000477889.5:ENST00000471696.6:ENST00000492132.1:ENST00000485923.1:ENST00000466234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.70591	2.784795	2.86368	0.0185716	0.0101619	0.0932453	0.0627153
chrX	129805474	129805573	19219648	0	-	0.414141	(0.39,0.42]	chrX	1633196	23	UTR3	UTR3:EXON_MRNA	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.70591	2.784795	2.86368	0.0185716	0.0101619	0.0932453	0.0627153
chr19	35164076	35164176	17303839	0	+	0.53	(0.49,0.53]	chr19	1430621	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	67	2	2.49297	2.7846349999999997	3.0763	6.69943e-4	4.23786e-5	0.0087033	8.98949e-4
chr1	9729221	9729320	854600	0	-	0.363636	(0.36,0.39]	chr1	86233	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.38564	2.78456	3.18348	0.0476159	0.00310315	0.17993	0.0263402
chr17	59947386	59947486	16297587	0	+	0.39	(0.36,0.39]	chr17	1321973	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RPS6KB1:RP11-178C3.1	ENSG00000108443.14:ENSG00000267318.1	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000406116.7:ENST00000591035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.38564	2.78456	3.18348	0.0476159	0.00310315	0.17993	0.0263402
chr1	89582847	89582944	345881	0	+	0.56701	(0.53,0.59]	chr1	34046	2	CDS	CDS:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000449440.5:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.77921	2.7845050000000002	2.7898	0.0132865	0.0128364	0.0740932	0.0719798
chr14	23026188	23026253	14528761	0	-	0.584615	(0.53,0.59]	chr14	1138374	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.77921	2.7845050000000002	2.7898	0.0132865	0.0128364	0.0740932	0.0719798
chr19	38831328	38831403	17561005	0	-	0.56	(0.53,0.59]	chr19	1475050	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ECH1:AC104534.3	ENSG00000104823.9:ENSG00000268083.5	ENST00000221418.9:ENST00000601778.5:ENST00000598707.5:ENST00000594164.5:ENST00000600178.5:ENST00000601060.5:ENST00000598316.5:ENST00000595470.1:ENST00000594769.5:ENST00000602021.1:ENST00000596118.1:ENST00000597089.5:ENST00000597205.1:ENST00000597805.1:ENST00000601094.5:ENST00000595567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.77921	2.7845050000000002	2.7898	0.0132865	0.0128364	0.0740932	0.0719798
chr3	53292447	53292542	4189414	0	-	0.557895	(0.53,0.59]	chr3	353869	5	CDS	CDS:EXON_MRNA	DCP1A	ENSG00000272886.6	ENST00000610213.6:ENST00000294241.10	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.77921	2.7845050000000002	2.7898	0.0132865	0.0128364	0.0740932	0.0719798
chrX	153959410	153959491	19275699	0	-	0.580247	(0.53,0.59]	chrX	1637948	2	CDS	CDS:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.77921	2.7845050000000002	2.7898	0.0132865	0.0128364	0.0740932	0.0719798
chr1	52346319	52346417	194387	0	+	0.540816	(0.53,0.59]	chr1	24785	2	UTR3	UTR3:EXON_MRNA	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.54844	2.78449	3.02054	0.00663226	0.00577011	0.0461575	0.0426551
chr18	57607133	57607223	17137526	0	-	0.566667	(0.53,0.59]	chr18	1407159	1	CDS	CDS:UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000586807.5:ENST00000589001.1:ENST00000411676.6:ENST00000540592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.54844	2.78449	3.02054	0.00663226	0.00577011	0.0461575	0.0426551
chrX	154358444	154358506	19278072	0	-	0.580645	(0.53,0.59]	chrX	1638301	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000466319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.54844	2.78449	3.02054	0.00663226	0.00577011	0.0461575	0.0426551
chr10	123139124	123139223	11298924	0	+	0.363636	(0.36,0.39]	chr10	861538	15	UTR3	UTR3:EXON_MRNA	HMX3	ENSG00000188620.11	ENST00000357878.7	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.56782	2.784485	3.00115	0.00659672	0.0012486	0.0460001	0.0137762
chr13	95161188	95161268	14110788	0	-	0.3375	(0.33,0.36]	chr13	1104381	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	1.82394	2.78448	3.74502	0.0494504	2.19782e-4	0.18557	0.00339463
chr11	6613557	6613656	12249911	0	-	0.373737	(0.36,0.39]	chr11	946834	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-732A19.10:TPP1	ENSG00000285338.1:ENSG00000166340.18	ENST00000532191.2:ENST00000299427.12:ENST00000533371.6:ENST00000682424.1:ENST00000644810.1:ENST00000524611.2:ENST00000643479.1:ENST00000646777.1:ENST00000645285.1:ENST00000642892.1:ENST00000644218.1:ENST00000644831.1:ENST00000645331.1:ENST00000645620.1:ENST00000647152.1:ENST00000643516.1:ENST00000646691.1:ENST00000643439.1:ENST00000644683.1:ENST00000644933.1:ENST00000647016.1:ENST00000647346.1:ENST00000647209.1:ENST00000643342.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	11	72	2	2.35478	2.78442	3.21406	0.00193274	2.30074e-6	0.0192272	8.09648e-5
chr3	47586052	47586150	4161741	0	-	0.326531	(0.29,0.33]	chr3	348302	9	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	10	50	2	2.60781	2.78435	2.96089	5.56633e-4	1.13347e-4	0.0076748	0.00201153
chr16	87384067	87384164	16070304	0	-	0.71134	(0.59,1]	chr16	1290986	4	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000618298.6:ENST00000569412.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	220	2	2.66328	2.78406	2.90484	2.26541e-4	1.99646e-5	0.00348145	5.34488e-4
chr15	48342277	48342376	14921582	0	+	0.323232	(0.29,0.33]	chr15	1173090	3	UTR3	UTR3:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000558813.5:ENST00000331200.8:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	29	2	2.63813	2.78381	2.92949	0.00803229	3.73367e-4	0.0528968	0.00519568
chr3	149982080	149982180	4515886	0	-	0.48	(0.455,0.49]	chr3	374864	110	INTRON	INTRON	PFN2	ENSG00000070087.14	ENST00000649949.1:ENST00000494827.5:ENST00000497148.5	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.30139	2.78381	3.26623	0.0530131	2.31662e-4	0.195536	0.00354314
chr5	37317987	37318085	6540226	0	-	0.469388	(0.455,0.49]	chr5	506578	1	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.30139	2.78381	3.26623	0.0530131	2.31662e-4	0.195536	0.00354314
chr7	139283798	139283895	8565204	0	+	0.484536	(0.455,0.49]	chr7	653564	9	CDS	CDS:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.30139	2.78381	3.26623	0.0530131	2.31662e-4	0.195536	0.00354314
chr5	82276108	82276208	6672993	0	-	0.41	(0.39,0.42]	chr5	515060	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5:ENST00000503605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	43	266	2	2.51096	2.7837699999999996	3.05658	5.2281e-6	3.3591e-8	1.76187e-4	2.19339e-6
chr2	86151445	86151520	2772855	0	-	0.466667	(0.455,0.49]	chr2	246327	3	CDS	CDS:EXON_MRNA:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.10347	2.7836800000000004	3.46389	0.0313707	9.14164e-4	0.13127	0.0110519
chr3	5178783	5178879	3278246	0	+	0.40625	(0.39,0.42]	chr3	288772	1	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	60	2	2.75826	2.78361	2.80896	0.00103132	4.79936e-5	0.0121443	9.91058e-4
chr14	55229402	55229495	14298331	0	+	0.419355	(0.39,0.42]	chr14	1117596	3	EXON_PSEUDO	EXON_PSEUDO	RP11-665C16.9	ENSG00000279392.1	ENST00000623123.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	69	2	2.16377	2.78346	3.40315	0.00182037	4.09541e-6	0.0183913	1.31567e-4
chr19	10689603	10689700	17226294	0	+	0.329897	(0.29,0.33]	chr19	1418922	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000590261.5:ENST00000591649.5:ENST00000586544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	62	2	2.64686	2.7833500000000004	2.91984	8.68366e-5	4.46601e-5	0.00161707	0.00103326
chr6	31645029	31645113	7661443	0	-	0.678571	(0.59,1]	chr6	584848	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000438149.5:ENST00000469182.1:ENST00000453833.5:ENST00000435080.5:ENST00000462682.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	100	2	2.66872	2.7832749999999997	2.89783	0.00198798	3.72466e-4	0.0195488	0.00518562
chr2	24068389	24068459	2555664	0	-	0.457143	(0.455,0.49]	chr2	229433	2	CDS	CDS:EXON_MRNA	SF3B6	ENSG00000115128.7	ENST00000233468.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.56938	2.78304	2.9967	0.00650423	0.00635313	0.0454205	0.0449666
chr1	161455682	161455782	1333753	0	-	0.72	(0.59,1]	chr1	136938	148	INTRON	INTRON	RP11-122G18.10	ENSG00000283360.1	ENST00000637155.1	lncRNA	lncRNA	lncRNA	lncRNA	291	4186	2	2.32193	2.782895	3.24386	1.70253e-5	2.92462e-8	4.30048e-4	2.13592e-6
chr1	30966080	30966179	916628	0	-	0.545455	(0.53,0.59]	chr1	96017	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000498627.1:ENST00000471894.1:ENST00000490546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	63	2	2.37842	2.7827450000000002	3.18707	7.03525e-4	3.55681e-4	0.00848325	0.00539248
chr10	70425929	70426028	11100490	0	+	0.424242	(0.42,0.455]	chr10	844350	43	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.50649	2.7826899999999997	3.05889	0.0302857	0.00524205	0.130016	0.0399155
chr2	28946875	28946971	1703964	0	+	0.427083	(0.42,0.455]	chr2	167216	2	UTR3	UTR3:EXON_MRNA	WDR43	ENSG00000163811.12	ENST00000407426.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.50649	2.7826899999999997	3.05889	0.0302857	0.00524205	0.130016	0.0399155
chr3	197885057	197885156	3992902	0	+	0.424242	(0.42,0.455]	chr3	336589	15	UTR3	UTR3:EXON_MRNA	LRCH3	ENSG00000186001.14	ENST00000438796.6:ENST00000425562.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.50649	2.7826899999999997	3.05889	0.0302857	0.00524205	0.130016	0.0399155
chr17	35626768	35626842	16206508	0	+	0.486486	(0.455,0.49]	chr17	1309051	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.43664	2.782535	3.12843	0.00394058	0.00392855	0.0322851	0.0315828
chr2	187554199	187554296	3071058	0	-	0.319588	(0.29,0.33]	chr2	271898	1	UTR5	UTR5:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	1.99415	2.7824400000000002	3.57073	0.0333928	5.40904e-6	0.140128	1.64814e-4
chr10	73375994	73376094	11571402	0	-	0.32	(0.29,0.33]	chr10	880849	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000463788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	80	2	2.32562	2.7823	3.23898	5.40155e-4	8.63106e-7	0.00746288	3.52974e-5
chr12	53041219	53041318	12884656	0	+	0.444444	(0.42,0.455]	chr12	1001808	11	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.48259	2.7822050000000003	3.08182	0.0031851	6.80627e-4	0.0267166	0.00876781
chr10	79315929	79316027	11148608	0	+	0.397959	(0.39,0.42]	chr10	847412	18	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.89968	2.782175	3.66467	0.0298458	3.60066e-4	0.130016	0.00544157
chr6	17615806	17615902	7618877	0	-	0.416667	(0.39,0.42]	chr6	580511	9	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.89968	2.782175	3.66467	0.0298458	3.60066e-4	0.130016	0.00544157
chr1	42835731	42835764	162170	0	+	0.454545	(0.42,0.455]	chr1	20394	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.7523	2.782025	2.81175	0.0153283	0.00227654	0.0828908	0.0209546
chr14	102027382	102027437	14495635	0	+	0.454545	(0.42,0.455]	chr14	1133167	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000647119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	2.7523	2.782025	2.81175	0.0153283	0.00227654	0.0828908	0.0209546
chr1	156293319	156293404	1313975	0	-	0.552941	(0.53,0.59]	chr1	133372	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLMP	ENSG00000198715.13	ENST00000461597.1:ENST00000472870.5:ENST00000647767.1:ENST00000612353.4:ENST00000614643.4:ENST00000622703.4:ENST00000362007.6:ENST00000482579.1:ENST00000481050.1:ENST00000476177.6:ENST00000497955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.34461	2.7820099999999996	3.21941	0.0457008	0.00266171	0.168044	0.0240332
chr2	87455472	87455558	1931415	0	+	0.383721	(0.36,0.39]	chr2	182227	4	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTOR:RP13-511M20.1	ENSG00000222041.11:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5	lncRNA	lncRNA	lncRNA	lncRNA	6	41	2	2.29974	2.7819399999999996	3.26414	0.00926291	4.42599e-5	0.0586162	9.29425e-4
chr15	68208139	68208239	15357787	0	-	0.57	(0.53,0.59]	chr15	1212943	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-315D16.2:CLN6	ENSG00000260007.3:ENSG00000128973.13	ENST00000637888.1:ENST00000562767.2:ENST00000637054.1:ENST00000646164.1:ENST00000249806.11:ENST00000638076.1:ENST00000636964.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5:ENST00000538696.5:ENST00000635747.1:ENST00000637494.1:ENST00000638144.1:ENST00000636212.1:ENST00000636674.1:ENST00000637823.1:ENST00000637450.1:ENST00000637667.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	23	2	2.35511	2.781925	3.20874	0.0445399	0.00278422	0.172163	0.0241009
chr7	127588498	127588565	8514767	0	+	0.58209	(0.53,0.59]	chr7	649565	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ARF5	ENSG00000004059.11	ENST00000463733.5:ENST00000415666.1:ENST00000467281.5:ENST00000000233.10:ENST00000489673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	23	2	2.35511	2.781925	3.20874	0.0445399	0.00278422	0.172163	0.0241009
chr6	26199243	26199293	7647226	0	-	0.24	[0,0.29]	chr6	582555	1	UTR5	UTR5:EXON_MRNA	RP1-34B20.21:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	2.03267	2.781895	3.53112	0.0131453	5.30932e-5	0.0733537	0.00108035
chr17	81510590	81510689	16707866	0	-	0.474747	(0.455,0.49]	chr17	1377329	13	UTR3	UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	279	2	2.27296	2.781835	3.29071	4.19726e-5	4.81286e-9	9.84661e-4	4.10744e-7
chr18	36156465	36156559	16825157	0	+	0.425532	(0.42,0.455]	chr18	1387613	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.7523	2.781835	2.81137	0.0153283	0.0120386	0.0828908	0.0700876
chr3	170149164	170149244	4574115	0	-	0.5	(0.49,0.53]	chr3	378593	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	54	2	2.32512	2.781835	3.23855	0.00306772	5.12488e-5	0.0272156	0.00104999
chr2	26127900	26127951	1685628	0	+	0.411765	(0.39,0.42]	chr2	164732	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	38	2	2.25245	2.781775	3.3111	0.00427758	2.11919e-4	0.0332717	0.00357806
chr12	53416249	53416347	12886231	0	+	0.397959	(0.39,0.42]	chr12	1002329	52	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.11399	2.7816099999999997	3.44923	0.014455	0.00105208	0.0787564	0.0123035
chr1	230281826	230281924	749825	0	+	0.479592	(0.455,0.49]	chr1	76088	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GALNT2	ENSG00000143641.10	ENST00000366672.5:ENST00000485438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.75044	2.781595	3.81275	0.0463133	0.0138827	0.170072	0.0760883
chr21	37490269	37490365	18117173	0	+	0.46875	(0.455,0.49]	chr21	1536276	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	1.75044	2.781595	3.81275	0.0463133	0.0138827	0.170072	0.0760883
chr7	130547641	130547741	9064640	0	-	0.46	(0.455,0.49]	chr7	692378	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COPG2	ENSG00000158623.14	ENST00000425248.5:ENST00000617523.1:ENST00000330992.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	1.75044	2.781595	3.81275	0.0463133	0.0138827	0.170072	0.0760883
chr8	102651969	102652061	9984344	0	-	0.467391	(0.455,0.49]	chr8	753410	10	CDS	CDS:EXON_MRNA	KLF10	ENSG00000155090.15	ENST00000285407.11:ENST00000395884.3	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.00242	2.781395	3.56037	0.0074882	5.72551e-4	0.0495195	0.0078026
chr20	38155846	38155927	17963204	0	-	0.604938	(0.59,1]	chr20	1522365	1	CDS	CDS:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000468262.5:ENST00000474777.1:ENST00000373403.7:ENST00000453095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	57	2	1.90752	2.781305	3.65509	0.0282297	5.95213e-4	0.127287	0.00746384
chr8	116655930	116656005	10034018	0	-	0.293333	(0.29,0.33]	chr8	755338	2	CDS	CDS:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000520289.1:ENST00000518949.5:ENST00000518995.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	114	2	2.6376	2.781275	2.92495	4.29194e-5	7.43116e-7	0.00100019	3.10008e-5
chr17	55393572	55393667	16605864	0	-	0.389474	(0.36,0.39]	chr17	1363845	11	UTR3	UTR3:EXON_MRNA	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.63115	2.781255	2.93136	0.0245975	0.00811967	0.114841	0.0528637
chr3	194411998	194412098	4654561	0	-	0.38	(0.36,0.39]	chr3	384351	4	SS5_PROX	SS5_PROX:INTRON	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.63115	2.781255	2.93136	0.0245975	0.00811967	0.114841	0.0528637
chr9	15464937	15465034	10585307	0	-	0.360825	(0.36,0.39]	chr9	801186	10	UTR3	UTR3:EXON_MRNA	PSIP1	ENSG00000164985.15	ENST00000380738.8:ENST00000380733.9	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.63115	2.781255	2.93136	0.0245975	0.00811967	0.114841	0.0528637
chr9	122845648	122845748	10841385	0	-	0.39	(0.36,0.39]	chr9	821358	12	UTR3	UTR3:EXON_MRNA	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.63115	2.781255	2.93136	0.0245975	0.00811967	0.114841	0.0528637
chr17	35724377	35724474	16207506	0	+	0.42268	(0.42,0.455]	chr17	1309154	8	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.59462	2.78125	2.96788	0.0062772	0.00109784	0.0445415	0.0119666
chr19	40458123	40458207	17566589	0	-	0.630952	(0.59,1]	chr19	1476401	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	180	2	1.86224	2.78118	3.70012	0.0049085	2.23493e-6	0.0366648	8.6801e-5
chr11	66369368	66369450	12424349	0	-	0.560976	(0.53,0.59]	chr11	964661	1	CDS	CDS:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	82	2	2.70078	2.7809	2.86102	0.0017805	3.56133e-5	0.0172974	8.68085e-4
chr16	87838713	87838765	16072521	0	-	0.615385	(0.59,1]	chr16	1291276	1	CDS	CDS:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.71222	2.78083	2.84944	0.0128238	0.00398753	0.0719798	0.031888
chr1	205714011	205714111	1461995	0	-	0.33	(0.29,0.33]	chr1	147460	13	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	12	59	2	2.67192	2.780775	2.88963	2.43559e-4	2.91371e-5	0.00399705	6.62759e-4
chr11	14469335	14469411	12281673	0	-	0.355263	(0.33,0.36]	chr11	949607	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.07736	2.780605	3.48385	0.0442037	9.93473e-6	0.172163	2.74996e-4
chr8	144791772	144791843	10150950	0	-	0.591549	(0.59,1]	chr8	764129	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RPL8:MIR6850	ENSG00000161016.18:ENSG00000283764.1	ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5:ENST00000612162.1:ENST00000531767.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	20	273	2	2.62089	2.78059	2.94029	3.81768e-5	3.35075e-5	8.27589e-4	8.20398e-4
chr17	41755843	41755895	16542983	0	-	0.615385	(0.59,1]	chr17	1356258	1	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	5	84	2	2.30623	2.78056	3.25489	0.0170607	8.68018e-5	0.0896731	0.0016165
chr7	121130124	121130209	8495155	0	+	0.458824	(0.455,0.49]	chr7	648378	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	2.40508	2.780475	3.15587	0.0022198	3.72741e-6	0.0211918	1.21218e-4
chr3	186789358	186789448	3958286	0	+	0.4	(0.39,0.42]	chr3	333880	2	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	109	2	2.52157	2.780135	3.0387	1.3555e-4	1.46312e-6	0.00250733	5.51606e-5
chr14	20801412	20801504	14518856	0	-	0.532609	(0.53,0.59]	chr14	1136979	3	UTR3	UTR3:EXON_MRNA	RNASE1	ENSG00000129538.14	ENST00000397967.5:ENST00000340900.3:ENST00000412779.2:ENST00000555698.5:ENST00000397970.4	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	1.97928	2.78007	3.58086	0.0218546	5.24546e-6	0.104785	1.60997e-4
chr6	159681099	159681199	8048216	0	-	0.49	(0.455,0.49]	chr6	615183	122	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	2.63872	2.7798550000000004	2.92099	0.00510378	0.00138399	0.0390492	0.0143168
chr21	33587521	33587602	18221055	0	-	0.320988	(0.29,0.33]	chr21	1546515	1	CDS	CDS:EXON_MRNA:INTRON	DONSON:AP000304.12	ENSG00000159147.18:ENSG00000249209.2	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000444517.5:ENST00000442660.5:ENST00000437395.5:ENST00000432378.5:ENST00000429238.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	2.62211	2.7797400000000003	2.93737	0.00826984	0.00310562	0.0534766	0.0274272
chr19	39836555	39836611	17563506	0	-	0.482143	(0.455,0.49]	chr19	1475735	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	49	2	2.53778	2.7796950000000002	3.02161	0.00105636	2.07727e-4	0.0117237	0.00351752
chr12	110720042	110720133	13539215	0	-	0.384615	(0.36,0.39]	chr12	1065101	5	UTR3	UTR3:EXON_MRNA	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	99	2	2.58343	2.77951	2.97559	2.89973e-4	1.52013e-6	0.0046122	5.68369e-5
chr22	23690966	23691063	18308518	0	+	0.56701	(0.53,0.59]	chr22	1555333	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RGL4	ENSG00000159496.15	ENST00000441897.5:ENST00000401461.5:ENST00000615003.4:ENST00000612432.4:ENST00000290691.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	2.37399	2.77923	3.18447	0.0126178	2.12116e-5	0.0717599	5.07604e-4
chr11	17356913	17357001	11827792	0	+	0.568182	(0.53,0.59]	chr11	905433	4	CDS	CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.64837	2.7790749999999997	2.90978	0.0199467	0.00857883	0.0984041	0.0552386
chr12	53512152	53512252	13339470	0	-	0.54	(0.53,0.59]	chr12	1049176	2	UTR3	UTR3:EXON_MRNA:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.64837	2.7790749999999997	2.90978	0.0199467	0.00857883	0.0984041	0.0552386
chr3	184327915	184328002	3949285	0	+	0.574713	(0.53,0.59]	chr3	332472	2	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000422614.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.64837	2.7790749999999997	2.90978	0.0199467	0.00857883	0.0984041	0.0552386
chr6	44229417	44229471	7161470	0	+	0.555556	(0.53,0.59]	chr6	553779	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC29A1	ENSG00000112759.19	ENST00000651428.1:ENST00000393844.7:ENST00000652680.1:ENST00000643028.2:ENST00000371713.6:ENST00000642613.1:ENST00000371740.10:ENST00000371755.9:ENST00000472176.2:ENST00000643869.1:ENST00000371731.6:ENST00000652453.1:ENST00000393841.6:ENST00000371724.6:ENST00000645692.1:ENST00000642777.1:ENST00000647460.1:ENST00000646582.1:ENST00000645607.1:ENST00000643152.1:ENST00000371708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.64837	2.7790749999999997	2.90978	0.0199467	0.00857883	0.0984041	0.0552386
chr7	143601467	143601547	8582913	0	+	0.5875	(0.53,0.59]	chr7	655927	2	EXON_PSEUDO	EXON_PSEUDO	TCAF1P1	ENSG00000223459.6	ENST00000414990.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	22	2	2.64837	2.7790749999999997	2.90978	0.0199467	0.00857883	0.0984041	0.0552386
chr1	42750185	42750260	966461	0	-	0.56	(0.53,0.59]	chr1	101723	1	CDS	CDS:EXON_MRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000431412.3:ENST00000481465.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.65894	2.77905	2.89916	0.0193255	0.00890406	0.0943643	0.0565003
chr10	27154177	27154210	11423736	0	-	0.545455	(0.53,0.59]	chr10	871007	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7:ENST00000477432.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.65894	2.77905	2.89916	0.0193255	0.00890406	0.0943643	0.0565003
chr20	53576211	53576308	18015903	0	-	0.56701	(0.53,0.59]	chr20	1526885	6	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.65894	2.77905	2.89916	0.0193255	0.00890406	0.0943643	0.0565003
chr6	32837536	32837593	7667229	0	-	0.54386	(0.53,0.59]	chr6	586814	1	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.65894	2.77905	2.89916	0.0193255	0.00890406	0.0943643	0.0565003
chr2	231455023	231455123	3226709	0	-	0.45	(0.42,0.455]	chr2	283836	16	UTR3	UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	80	2	2.28012	2.7789	3.27768	4.08245e-4	1.0456e-5	0.00600249	2.87011e-4
chr10	70422444	70422543	11100455	0	+	0.424242	(0.42,0.455]	chr10	844350	8	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	11	71	2	2.2877	2.7788500000000003	3.27	7.54128e-4	1.15661e-5	0.00901774	3.41751e-4
chr4	82819173	82819253	5496422	0	-	0.4125	(0.39,0.42]	chr4	440159	1	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	114	2	2.70031	2.7787100000000002	2.85711	6.48624e-5	2.8495e-6	0.00138613	9.64791e-5
chr6	53269226	53269270	7740175	0	-	0.522727	(0.49,0.53]	chr6	594339	1	CDS	CDS:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	2.69746	2.7785450000000003	2.85963	0.00380414	7.04784e-5	0.0317723	0.00135879
chr12	4301097	4301196	12704454	0	+	0.494949	(0.49,0.53]	chr12	985544	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	59	2	2.3044	2.7784199999999997	3.25244	0.00696379	1.25784e-5	0.0474632	3.31924e-4
chr19	18899872	18899947	17501142	0	-	0.56	(0.53,0.59]	chr19	1468453	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000600528.1:ENST00000349893.8:ENST00000595984.5:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	44	2	2.35511	2.778125	3.20114	0.0445399	6.63641e-5	0.172163	0.00129398
chr1	1051548	1051645	2406	0	+	0.680412	(0.59,1]	chr1	571	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.96195	2.77808	3.59421	0.0144738	6.47795e-5	0.0790046	0.00126536
chr2	151802578	151802677	2940267	0	-	0.363636	(0.36,0.39]	chr2	261273	39	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ARL5A:CTD-2021K4.1	ENSG00000162980.17:ENSG00000283228.1	ENST00000446896.7:ENST00000295087.13:ENST00000636024.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	1.85874	2.7779249999999998	3.69711	0.0415243	1.63058e-5	0.164804	4.12921e-4
chr1	1055739	1055833	2456	0	+	0.585106	(0.53,0.59]	chr1	592	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AGRN:RP11-54O7.14	ENSG00000188157.15:ENSG00000242590.1	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1:ENST00000418300.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	5	39	2	1.94437	2.77785	3.61133	0.0143432	4.55298e-4	0.0783202	0.00608573
chr9	124887479	124887549	10853131	0	-	0.457143	(0.455,0.49]	chr9	822085	2	EXON_SMALL	EXON_SMALL:INTRON	GOLGA1:RNU4-82P	ENSG00000136935.14:ENSG00000199313.1	ENST00000373555.9:ENST00000475407.5:ENST00000362443.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:nonsense_mediated_decay	117	802	2	2.3882	2.7776899999999998	3.16718	1.85146e-6	7.11124e-10	7.4412e-5	7.73616e-8
chr22	41906047	41906144	18383952	0	+	0.546392	(0.53,0.59]	chr22	1565112	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	40	2	2.27113	2.777675	3.28422	0.0178853	2.10061e-4	0.0918323	0.00327655
chr3	33865336	33865430	3399889	0	+	0.62766	(0.59,1]	chr3	295761	2	CDS	CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000473593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	75	2	2.4986	2.77767	3.05674	0.00349906	9.4094e-4	0.0296494	0.0106352
chr19	28424282	28424381	17525105	0	-	0.464646	(0.455,0.49]	chr19	1470899	40	INTRON	INTRON	AC005307.1	ENSG00000260725.1	ENST00000567877.1	lncRNA	lncRNA	lncRNA	lncRNA	5	32	2	1.81931	2.7776	3.73589	0.0235519	2.30579e-4	0.108737	0.00382267
chr4	109494614	109494694	5039415	0	+	0.55	(0.53,0.59]	chr4	409945	1	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.56002	2.777565	2.99511	0.00634904	9.46531e-4	0.0446708	0.010681
chr10	131967833	131967931	11750437	0	-	0.397959	(0.39,0.42]	chr10	896497	15	UTR3	UTR3:EXON_MRNA	BNIP3	ENSG00000176171.11	ENST00000368636.8	protein_coding	protein_coding	protein_coding	protein_coding	12	81	2	2.63229	2.7772699999999997	2.92225	7.8066e-4	6.30225e-6	0.00973486	1.88265e-4
chr1	150557944	150558012	468498	0	+	0.735294	(0.59,1]	chr1	47484	1	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	2.16424	2.7765500000000003	3.38886	0.0123032	4.08624e-5	0.0705839	8.76602e-4
chr16	58707791	58707886	15967621	0	-	0.4	(0.39,0.42]	chr16	1281403	8	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.87119	2.776365	3.68154	0.0373134	3.05414e-4	0.152293	0.00442973
chr5	133076734	133076816	6226894	0	+	0.390244	(0.39,0.42]	chr5	484761	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	1.87119	2.776365	3.68154	0.0373134	3.05414e-4	0.152293	0.00442973
chr5	133972670	133972770	6843269	0	-	0.29	[0,0.29]	chr5	523565	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000489906.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	36	2	2.49351	2.776295	3.05908	0.0015585	1.30246e-4	0.0156889	0.00243336
chr1	229324742	229324841	1541557	0	-	0.353535	(0.33,0.36]	chr1	154303	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	55	2	2.66759	2.776265	2.88494	6.89291e-4	7.23783e-5	0.00876781	0.00138935
chr2	231455498	231455597	3226715	0	-	0.50505	(0.49,0.53]	chr2	283839	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	93	2	1.754	2.776075	3.79815	0.00675059	1.75769e-7	0.0461695	9.09965e-6
chr3	32530460	32530520	4110427	0	-	0.366667	(0.36,0.39]	chr3	343363	1	CDS	CDS:EXON_MRNA	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000472985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.02118	2.77606	3.53094	0.0305588	0.0251625	0.130016	0.117055
chr20	63522042	63522124	17865472	0	+	0.609756	(0.59,1]	chr20	1510945	3	UTR3	UTR3:EXON_MRNA	PPDPF	ENSG00000125534.10	ENST00000370179.8	protein_coding	protein_coding	protein_coding	protein_coding	15	232	2	2.02434	2.77591	3.52748	0.00310399	5.76211e-7	0.0274272	2.49975e-5
chr5	163439438	163439520	6343377	0	+	0.378049	(0.36,0.39]	chr5	493986	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000506186.1:ENST00000340828.7:ENST00000510097.5:ENST00000511490.4:ENST00000510664.5:ENST00000511683.6:ENST00000512532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	43	2	2.66259	2.7758849999999997	2.88918	0.00212816	2.53755e-4	0.0206577	0.00381647
chr17	1653936	1654016	16401301	0	-	0.5125	(0.49,0.53]	chr17	1334842	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000576585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	39	2	2.59881	2.7758599999999998	2.95291	0.00184545	0.00119735	0.0178046	0.0134293
chr12	22065211	22065311	12783523	0	+	0.39	(0.36,0.39]	chr12	992949	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CMAS	ENSG00000111726.13	ENST00000229329.7:ENST00000534981.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	2.08671	2.77584	3.46497	0.01635	0.00105709	0.0867615	0.0123035
chr8	20220700	20220800	9220104	0	+	0.43	(0.42,0.455]	chr8	704735	4	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.19674	2.775825	3.35491	0.0254904	1.39104e-4	0.117089	0.00235518
chr7	93219394	93219494	8927922	0	-	0.53	(0.49,0.53]	chr7	681292	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HEPACAM2	ENSG00000188175.10	ENST00000394468.7:ENST00000341723.8:ENST00000440868.5:ENST00000453812.2	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.81659	2.775765	3.73494	0.0376859	0.0189345	0.147713	0.0934721
chr17	59839767	59839811	16296977	0	+	0.431818	(0.42,0.455]	chr17	1321862	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	36	2	2.03532	2.77535	3.51538	0.040947	5.28826e-5	0.163285	0.00107799
chr12	48074689	48074741	13319382	0	-	0.423077	(0.42,0.455]	chr12	1044656	1	CDS	CDS:UTR3:EXON_MRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.63665	2.7751900000000003	2.91373	0.00892357	0.0048172	0.0567495	0.0365653
chr5	173034423	173034515	6388362	0	+	0.423913	(0.42,0.455]	chr5	496198	1	UTR3	UTR3:EXON_MRNA	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.63665	2.7751900000000003	2.91373	0.00892357	0.0048172	0.0567495	0.0365653
chr1	113977472	113977571	418250	0	+	0.343434	(0.33,0.36]	chr1	41199	41	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.07736	2.7751799999999998	3.473	0.0442037	8.77304e-4	0.172163	0.0101202
chr1	109592042	109592133	399335	0	+	0.384615	(0.36,0.39]	chr1	38897	1	CDS	CDS:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	2.48922	2.7748150000000003	3.06041	0.0110399	3.77931e-6	0.0652374	1.22746e-4
chr12	885126	885222	12681421	0	+	0.520833	(0.49,0.53]	chr12	984118	6	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	62	2	1.9676	2.774705	3.58181	0.00876974	4.83779e-6	0.056115	1.51238e-4
chr17	41886111	41886209	16543943	0	-	0.561224	(0.53,0.59]	chr17	1356506	1	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	2.0693	2.774605	3.47991	0.0160468	6.7738e-5	0.0860154	0.0013157
chr10	102162110	102162169	11226680	0	+	0.576271	(0.53,0.59]	chr10	854875	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	42	2	2.52856	2.77455	3.02054	0.00577011	0.00107225	0.0426551	0.0118238
chr11	62715499	62715553	12410567	0	-	0.37037	(0.36,0.39]	chr11	961495	1	CDS	CDS:EXON_MRNA	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	36	2	2.18029	2.774505	3.36872	0.0077769	1.31092e-4	0.0517139	0.00226268
chr19	58544937	58545017	17413286	0	+	0.7125	(0.59,1]	chr19	1451172	2	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	7	95	2	2.14463	2.77442	3.40421	0.00445434	1.95627e-4	0.0340903	0.00334517
chr12	54369319	54369412	13343463	0	-	0.645161	(0.59,1]	chr12	1049674	3	UTR3	UTR3:EXON_MRNA	ZNF385A	ENSG00000161642.18	ENST00000551109.5:ENST00000352268.10:ENST00000394313.7:ENST00000338010.9:ENST00000550779.5:ENST00000546970.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	57	2	2.29886	2.7742899999999997	3.24972	0.00759671	0.00314037	0.0505607	0.0264943
chr22	19480157	19480217	18295359	0	+	0.583333	(0.53,0.59]	chr22	1552721	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	2.08502	2.774255	3.46349	0.00828532	9.2216e-4	0.0543012	0.0104432
chr1	40073191	40073288	954667	0	-	0.402062	(0.39,0.42]	chr1	100850	6	UTR3	UTR3:EXON_MRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	2.38186	2.77399	3.16612	0.00601449	4.03393e-4	0.0434483	0.00550292
chr3	194405130	194405229	4654491	0	-	0.393939	(0.39,0.42]	chr3	384345	26	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	1.98676	2.7738650000000002	3.56097	0.0439902	6.12149e-4	0.163596	0.00818575
chr5	70952550	70952648	6024686	0	+	0.306122	(0.29,0.33]	chr5	472101	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SMN1	ENSG00000172062.17	ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000510679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	23	2	1.78695	2.77352	3.76009	0.0289406	3.08518e-4	0.127328	0.00476847
chr1	47376703	47376745	182631	0	+	0.357143	(0.33,0.36]	chr1	23842	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.28792	2.77306	3.2582	0.0239159	0.00230915	0.112531	0.0211205
chr11	90282748	90282843	12059326	0	+	0.578947	(0.53,0.59]	chr11	929980	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	41	2	2.16037	2.772875	3.38538	0.0254312	1.18366e-4	0.117089	0.00207204
chr3	195785242	195785341	4661119	0	-	0.565657	(0.53,0.59]	chr3	385270	66	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	41	2	2.16037	2.772875	3.38538	0.0254312	1.18366e-4	0.117089	0.00207204
chr18	49491784	49491840	17119633	0	-	0.553571	(0.53,0.59]	chr18	1405602	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000332968.11:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	74	2	2.45052	2.772825	3.09513	0.00355092	1.47075e-5	0.0300049	3.78574e-4
chr6	166320020	166320118	8077547	0	-	0.285714	[0,0.29]	chr6	616647	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000479490.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.15488	2.772745	3.39061	0.0436536	0.00134497	0.170594	0.0140037
chr5	100046449	100046535	6126656	0	+	0.395349	(0.39,0.42]	chr5	479106	1	EXON_PSEUDO	EXON_PSEUDO	MTND6P22	ENSG00000270230.1	ENST00000604233.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	58	2	2.61645	2.7727	2.92895	3.36969e-4	1.16014e-4	0.00475537	0.00221277
chr8	4787523	4787620	9177799	0	+	0.43299	(0.42,0.455]	chr8	700904	3	EXON_PSEUDO	EXON_PSEUDO	PAICSP4	ENSG00000254244.1	ENST00000517543.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	28	2	1.99701	2.7726949999999997	3.54838	0.0235036	5.9986e-4	0.111072	0.0075062
chr5	134157532	134157632	6843695	0	-	0.41	(0.39,0.42]	chr5	523620	87	UTR3	UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	62	2	1.63008	2.77258	3.91508	0.0358647	3.50367e-7	0.147298	1.63119e-5
chr2	99390309	99390401	1954124	0	+	0.467391	(0.455,0.49]	chr2	185574	2	CDS	CDS:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11:ENST00000470868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.69344	2.7725799999999996	2.85172	0.0176068	0.010864	0.0925619	0.0643837
chrX	111621011	111621107	19174306	0	-	0.479167	(0.455,0.49]	chrX	1630748	15	EXON_PSEUDO	EXON_PSEUDO	EIF4BP7	ENSG00000225031.1	ENST00000432307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	18	2	2.69344	2.7725799999999996	2.85172	0.0176068	0.010864	0.0925619	0.0643837
chr15	57287754	57287854	14950152	0	+	0.35	(0.33,0.36]	chr15	1174949	17	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	11	57	2	2.74911	2.77257	2.79603	1.52901e-4	8.41362e-5	0.00254973	0.00172936
chr12	98533579	98533674	13036713	0	+	0.421053	(0.42,0.455]	chr12	1014954	9	CDS	CDS:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	45	2	2.18978	2.7723449999999996	3.35491	0.00355167	1.39104e-4	0.0300064	0.00235518
chr2	65312322	65312420	2708755	0	-	0.326531	(0.29,0.33]	chr2	241397	16	UTR3	UTR3:EXON_MRNA	SPRED2	ENSG00000198369.10	ENST00000356388.9	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.99415	2.77232	3.55049	0.0333928	6.15323e-4	0.140128	0.00765848
chr7	88209395	88209452	8914251	0	-	0.438596	(0.42,0.455]	chr7	680429	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SRI	ENSG00000075142.14	ENST00000265729.7:ENST00000419179.5:ENST00000472930.6:ENST00000490437.5:ENST00000394641.7:ENST00000431660.5:ENST00000457606.5:ENST00000486860.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	1.69266	2.77208	3.8515	0.0354788	0.0119089	0.143019	0.0686664
chr8	47904922	47904976	9816854	0	-	0.462963	(0.455,0.49]	chr8	742797	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	1.96875	2.7720000000000002	3.57525	0.0480352	5.24878e-4	0.180552	0.00677371
chr10	74110434	74110532	11117566	0	+	0.44898	(0.42,0.455]	chr10	846290	9	INTRON	INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	2.11785	2.7719449999999997	3.42604	0.0154862	1.46189e-5	0.0836691	3.76794e-4
chr15	90219792	90219891	15098441	0	+	0.565657	(0.53,0.59]	chr15	1187764	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEMA4B	ENSG00000185033.14	ENST00000559300.5:ENST00000561085.1:ENST00000332496.10:ENST00000411539.6:ENST00000560089.5:ENST00000558051.2:ENST00000558848.1:ENST00000558065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.16037	2.7719199999999997	3.38347	0.0254312	0.00132446	0.117089	0.0138834
chr20	35619252	35619310	17769537	0	+	0.586207	(0.53,0.59]	chr20	1501189	2	CDS	CDS:EXON_MRNA	SPAG4	ENSG00000061656.11	ENST00000679710.1:ENST00000374273.8:ENST00000454819.1:ENST00000468248.5:ENST00000498203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.16037	2.7719199999999997	3.38347	0.0254312	0.00132446	0.117089	0.0138834
chr12	76084566	76084650	13424252	0	-	0.72619	(0.59,1]	chr12	1056691	1	UTR5	UTR5:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1:ENST00000551500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	56	822	2	2.1498	2.7718749999999996	3.39395	2.11239e-4	3.10279e-8	0.00357322	2.05188e-6
chr3	5179750	5179847	3278256	0	+	0.402062	(0.39,0.42]	chr3	288772	11	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.48899	2.7718	3.05461	8.55091e-4	6.84309e-4	0.0105173	0.00836671
chr10	94155691	94155745	11628541	0	-	0.333333	(0.33,0.36]	chr10	885465	2	EXON_SMALL	EXON_SMALL	RNU6-657P	ENSG00000206631.1	ENST00000383904.1	snRNA	snRNA	snRNA	snRNA	9	49	2	2.01701	2.771675	3.52634	0.00697043	7.28639e-6	0.0474694	2.13219e-4
chr8	123207328	123207415	9588601	0	+	0.701149	(0.59,1]	chr8	727197	3	CDS	CDS:EXON_MRNA	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	2.45604	2.771555	3.08707	0.0010867	8.79989e-4	0.0118659	0.0107294
chr16	71927699	71927756	15733921	0	+	0.54386	(0.53,0.59]	chr16	1253454	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000378798.9:ENST00000439924.6:ENST00000456820.2:ENST00000536027.1:ENST00000541180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.63316	2.77147	2.90978	0.00857883	0.00474401	0.0552386	0.0361423
chr2	46904164	46904264	2629824	0	-	0.59	(0.53,0.59]	chr2	236786	24	UTR3	UTR3:EXON_MRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.63316	2.77147	2.90978	0.00857883	0.00474401	0.0552386	0.0361423
chr1	112649417	112649469	411257	0	+	0.480769	(0.455,0.49]	chr1	40501	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	63	2	2.6627	2.77142	2.88014	5.73968e-4	6.16382e-5	0.00781936	0.0012284
chrX	55015659	55015742	19084622	0	-	0.578313	(0.53,0.59]	chrX	1623747	2	CDS	CDS:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	9	78	2	2.58886	2.7712649999999996	2.95367	7.82255e-4	3.88976e-5	0.00975183	8.42006e-4
chr8	67043232	67043317	9867669	0	-	0.305882	(0.29,0.33]	chr8	746087	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PPP1R42:COPS5	ENSG00000178125.14:ENSG00000121022.14	ENST00000517834.5:ENST00000517736.5:ENST00000521509.5:ENST00000357849.9:ENST00000523086.5:ENST00000518374.5:ENST00000521386.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.59395	2.771195	2.94844	0.0249836	0.00217122	0.114013	0.0208941
chr17	16428816	16428899	16141964	0	+	0.614458	(0.59,1]	chr17	1300714	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRPV2	ENSG00000187688.15	ENST00000338560.12:ENST00000583241.1:ENST00000577277.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	35	2	2.69477	2.771125	2.84748	0.020208	0.0124539	0.0978331	0.0712518
chr2	127955164	127955254	2869695	0	-	0.611111	(0.59,1]	chr2	256598	3	CDS	CDS:EXON_MRNA	SAP130	ENSG00000136715.19	ENST00000357702.9:ENST00000259235.7:ENST00000643581.2:ENST00000259234.10	protein_coding	protein_coding	protein_coding	protein_coding	2	35	2	2.76802	2.7710999999999997	2.77418	0.0160729	0.0158525	0.0860154	0.0854671
chr20	2467606	2467663	17878995	0	-	0.368421	(0.36,0.39]	chr20	1512846	1	CDS	CDS:UTR3:EXON_MRNA	SNRPB:RP4-734P14.4	ENSG00000125835.19:ENSG00000256566.1	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2:ENST00000461548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.1437	2.7708649999999997	3.39803	0.0340515	0.00122711	0.141465	0.0130695
chr5	149353417	149353515	6290466	0	+	0.377551	(0.36,0.39]	chr5	490713	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GRPEL2	ENSG00000164284.15	ENST00000329271.8:ENST00000507562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.1437	2.7708649999999997	3.39803	0.0340515	0.00122711	0.141465	0.0130695
chr10	95271632	95271708	11630118	0	-	0.460526	(0.455,0.49]	chr10	885752	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5:ENST00000493949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.04847	2.770765	3.49306	0.0192065	6.07633e-5	0.0943643	0.00121305
chr7	127591619	127591700	8514808	0	+	0.481481	(0.455,0.49]	chr7	649588	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF5:FSCN3	ENSG00000004059.11:ENSG00000106328.10	ENST00000463733.5:ENST00000000233.10:ENST00000478328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	39	2	2.04847	2.770765	3.49306	0.0192065	6.07633e-5	0.0943643	0.00121305
chr1	193085594	193085692	631174	0	+	0.244898	[0,0.29]	chr1	64149	7	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367446.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.40395	2.77074	3.13753	0.0210081	0.00396668	0.101116	0.0317467
chr11	33706270	33706369	12344175	0	-	0.242424	[0,0.29]	chr11	953994	34	UTR3	UTR3:EXON_MRNA:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.40395	2.77074	3.13753	0.0210081	0.00396668	0.101116	0.0317467
chr3	14944369	14944468	4050040	0	-	0.272727	[0,0.29]	chr3	340108	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1	lncRNA	lncRNA	lncRNA	lncRNA	3	16	2	2.40395	2.77074	3.13753	0.0210081	0.00396668	0.101116	0.0317467
chr3	128479426	128479525	4441104	0	-	0.232323	[0,0.29]	chr3	368923	1	UTR3	UTR3:EXON_MRNA	GATA2	ENSG00000179348.12	ENST00000341105.7	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.40395	2.77074	3.13753	0.0210081	0.00396668	0.101116	0.0317467
chr7	128769114	128769167	8521847	0	+	0.54717	(0.53,0.59]	chr7	650197	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	2.5209	2.77072	3.02054	0.00577011	3.09131e-4	0.0426551	0.00446345
chr10	73380115	73380201	11571449	0	-	0.488372	(0.455,0.49]	chr10	880871	2	CDS	CDS:EXON_MRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.27492	2.770575	3.26623	0.0193827	2.31662e-4	0.0943643	0.00354314
chr22	20555080	20555148	18298868	0	+	0.661765	(0.59,1]	chr22	1553465	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	47	2	2.17889	2.7705599999999997	3.36223	0.025085	0.00203572	0.116848	0.0192213
chr3	136152183	136152276	4469324	0	-	0.322581	(0.29,0.33]	chr3	371336	11	CDS	CDS:EXON_MRNA	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.62025	2.7704500000000003	2.92065	0.0117842	0.00573581	0.0686664	0.0417422
chr8	123208556	123208653	9588614	0	+	0.474227	(0.455,0.49]	chr8	727199	10	UTR3	UTR3:EXON_MRNA:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	18	126	2	2.31753	2.770435	3.22334	3.12664e-4	3.0378e-7	0.00482683	1.44905e-5
chr12	56106661	56106716	12898022	0	+	0.309091	(0.29,0.33]	chr12	1004131	1	CDS_START	CDS_START:CDS:EXON_MRNA	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5:ENST00000551061.1:ENST00000550166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.06067	2.77034	3.48001	0.0384863	0.00126219	0.149227	0.013837
chr11	10508269	10508326	12270799	0	-	0.614035	(0.59,1]	chr11	948736	1	EXON_SMALL	EXON_SMALL:UTR5:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:primary_miRNA	16	276	2	1.9362	2.77032	3.60444	0.00582057	1.29557e-7	0.0427941	6.98503e-6
chr2	132255280	132255378	2878625	0	-	0.479592	(0.455,0.49]	chr2	257829	21	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	262	1769	2	2.432	2.77032	3.10864	4.41864e-7	4.58801e-10	2.21859e-5	5.25846e-8
chr10	125666674	125666774	11734038	0	-	0.5	(0.49,0.53]	chr10	895369	43	INTRON	INTRON	TEX36	ENSG00000175018.13	ENST00000532135.5:ENST00000526819.5:ENST00000368821.4	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	2.02795	2.770115	3.51228	0.0110299	7.99738e-6	0.0652374	2.28719e-4
chr1	109593435	109593534	399350	0	+	0.373737	(0.36,0.39]	chr1	38901	12	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	2.73394	2.76999	2.80604	0.00131831	2.42014e-4	0.0143836	0.00366309
chr1	150577418	150577474	1288952	0	-	0.517857	(0.49,0.53]	chr1	128250	2	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	2.26641	2.769845	3.27328	0.0190546	2.21441e-4	0.093872	0.00341572
chr10	71816582	71816678	11563211	0	-	0.614583	(0.59,1]	chr10	879958	4	UTR3	UTR3:EXON_MRNA	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3	protein_coding	protein_coding	protein_coding	protein_coding	19	259	2	2.69186	2.76975	2.84764	9.17427e-5	2.42915e-5	0.00183796	5.69937e-4
chr19	38815612	38815712	17560836	0	-	0.54	(0.53,0.59]	chr19	1475022	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ECH1	ENSG00000104823.9	ENST00000221418.9:ENST00000601333.1:ENST00000594391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	2.15403	2.769705	3.38538	0.0118065	1.18366e-4	0.0686664	0.00207204
chrX	40073226	40073324	19045124	0	-	0.571429	(0.53,0.59]	chrX	1618754	10	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	2.15403	2.769705	3.38538	0.0118065	1.18366e-4	0.0686664	0.00207204
chr15	82536881	82536975	15412528	0	-	0.510638	(0.49,0.53]	chr15	1218653	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CH17-66N5.1:RPS17:RP11-152F13.10	ENSG00000284803.1:ENSG00000182774.13:ENSG00000260836.2	ENST00000561440.2:ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:lncRNA	3	25	2	2.49797	2.76952	3.04107	0.00843736	0.00533879	0.0546021	0.0392268
chr1	95196716	95196815	362154	0	+	0.242424	[0,0.29]	chr1	35683	50	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.42645	2.76951	3.11257	0.0123114	0.00120521	0.070688	0.0134827
chr1	222669892	222669989	1520087	0	-	0.319588	(0.29,0.33]	chr1	151836	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	AIDA	ENSG00000186063.13	ENST00000474863.5:ENST00000340020.11:ENST00000495670.5:ENST00000355727.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.22218	2.769355	3.31653	0.023782	0.00261621	0.109413	0.0238929
chr9	111932264	111932359	10420370	0	+	0.421053	(0.42,0.455]	chr9	784479	2	CDS	CDS:EXON_MRNA:PRIMIRNA	UGCG:MIR4668	ENSG00000148154.10:ENSG00000266315.1	ENST00000374279.4:ENST00000582284.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	10	79	2	2.42938	2.7692449999999997	3.10911	0.0045028	2.64917e-6	0.0349711	9.11128e-5
chr6	7287513	7287613	7586867	0	-	0.41	(0.39,0.42]	chr6	578692	65	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.21029	2.7692	3.32811	0.0100911	0.00182819	0.0625052	0.0183913
chr3	10280019	10280119	3303615	0	+	0.45	(0.42,0.455]	chr3	290786	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TATDN2:RP11-438J1.1	ENSG00000157014.11:ENSG00000272410.5	ENST00000287652.8:ENST00000448281.7:ENST00000437082.5:ENST00000450534.1:ENST00000496355.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	2.57051	2.769195	2.96788	0.0265466	0.00109784	0.120071	0.0119666
chr7	33017511	33017601	8760371	0	-	0.422222	(0.42,0.455]	chr7	668260	1	CDS	CDS:UTR3:EXON_MRNA	NT5C3A	ENSG00000122643.23	ENST00000456458.5:ENST00000610140.7:ENST00000643244.1:ENST00000409467.6:ENST00000409787.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.57051	2.769195	2.96788	0.0265466	0.00109784	0.120071	0.0119666
chr12	57064645	57064739	13353826	0	-	0.361702	(0.36,0.39]	chr12	1052235	1	CDS	CDS:UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	47	2	2.27411	2.769125	3.26414	0.00289952	4.42599e-5	0.0258199	9.29425e-4
chr1	225422210	225422277	1528272	0	-	0.522388	(0.49,0.53]	chr1	152838	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000425080.1:ENST00000488632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	34	2	2.30264	2.7690599999999996	3.23548	0.0165402	2.76544e-4	0.087611	0.00444204
chr10	123162755	123162828	11299047	0	+	0.410959	(0.39,0.42]	chr10	861582	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000481952.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	41	2	1.91489	2.7688	3.62271	0.0197788	2.66379e-5	0.0960939	6.1526e-4
chr7	128770742	128770840	8521864	0	+	0.306122	(0.29,0.33]	chr7	650198	17	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	17	93	2	2.401	2.76879	3.13658	7.57634e-4	3.5585e-7	0.00946127	1.64926e-5
chr15	58679202	58679282	15311510	0	-	0.425	(0.42,0.455]	chr15	1208354	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	73	2	2.47379	2.76873	3.06367	0.00996858	3.80063e-6	0.0621728	1.23404e-4
chr17	7655993	7656092	16106178	0	+	0.50505	(0.49,0.53]	chr17	1297135	2	UTR3	UTR3:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.38683	2.7686349999999997	3.15044	0.012654	4.32676e-4	0.0718207	0.00583708
chr2	173575298	173575393	3019379	0	-	0.421053	(0.42,0.455]	chr2	267323	3	EXON_PSEUDO	EXON_PSEUDO	AC013410.1	ENSG00000237016.1	ENST00000436223.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	23	2	2.59462	2.768625	2.94263	0.00766873	0.0062772	0.0503696	0.0445415
chr1	154259947	154260029	480042	0	+	0.548781	(0.53,0.59]	chr1	49707	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6:ENST00000495676.5:ENST00000433615.5:ENST00000428595.1:ENST00000465855.5:ENST00000484696.1:ENST00000475373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	124	2	1.98414	2.768615	3.55309	0.0013163	4.52324e-7	0.0143707	2.03369e-5
chr10	21726243	21726299	10961750	0	+	0.428571	(0.42,0.455]	chr10	834162	1	CDS	CDS:UTR3:EXON_MRNA	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.62346	2.7685950000000004	2.91373	0.00892357	0.00164881	0.0567495	0.0163523
chr1	151423948	151424026	1293196	0	-	0.435897	(0.42,0.455]	chr1	129276	1	CDS	CDS:UTR3:EXON_MRNA	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000482678.1:ENST00000441516.1:ENST00000495253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.47379	2.7683600000000004	3.06293	0.00996858	0.00492128	0.0621728	0.0366648
chr15	64965319	64965389	15342378	0	-	0.442857	(0.42,0.455]	chr15	1211245	1	CDS	CDS:UTR3:EXON_MRNA	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000559199.5:ENST00000561078.5:ENST00000416889.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.47379	2.7683600000000004	3.06293	0.00996858	0.00492128	0.0621728	0.0366648
chr17	51155654	51155754	16266479	0	+	0.51	(0.49,0.53]	chr17	1319577	1	CDS_START	CDS_START:CDS:EXON_MRNA	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000487481.1:ENST00000336097.7:ENST00000480143.5:ENST00000512768.1:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1:ENST00000013034.3:ENST00000456492.1:ENST00000465188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	49	2	2.30121	2.768345	3.23548	0.00182399	2.76544e-4	0.0176208	0.00444204
chr8	47854082	47854148	9816313	0	-	0.575758	(0.53,0.59]	chr8	742653	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	36	2	2.62668	2.76823	2.90978	0.00857883	0.00157636	0.0552386	0.015761
chr2	27309491	27309587	2569760	0	-	0.427083	(0.42,0.455]	chr2	231327	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000620797.4:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.36247	2.7682200000000003	3.17397	0.0462889	0.0031821	0.176878	0.0267094
chr22	20889127	20889226	18299832	0	+	0.434343	(0.42,0.455]	chr22	1553630	14	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.36247	2.7682200000000003	3.17397	0.0462889	0.0031821	0.176878	0.0267094
chr8	58572204	58572259	9351167	0	+	0.436364	(0.42,0.455]	chr8	715135	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDCBP	ENSG00000137575.12	ENST00000522243.5:ENST00000447182.6:ENST00000413219.6:ENST00000424270.6:ENST00000523483.5:ENST00000520168.5:ENST00000260130.9:ENST00000519115.5:ENST00000522843.5:ENST00000630925.1:ENST00000447267.4:ENST00000520228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	2.36247	2.7682200000000003	3.17397	0.0462889	0.0031821	0.176878	0.0267094
chr19	18435325	18435404	17499317	0	-	0.658228	(0.59,1]	chr19	1468100	2	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582287.6:ENST00000582770.6:ENST00000578963.5:ENST00000581672.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	102	2	2.67664	2.768185	2.85973	7.1836e-4	6.8436e-4	0.00903729	0.00836671
chr2	20283041	20283136	2540980	0	-	0.378947	(0.36,0.39]	chr2	228544	2	CDS	CDS:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.16717	2.767945	3.36872	0.0152504	1.31092e-4	0.0828908	0.00226268
chr5	150710761	150710857	6914733	0	-	0.375	(0.36,0.39]	chr5	529276	25	UTR3	UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	2.42114	2.7678849999999997	3.11463	0.00564641	1.14911e-4	0.0422191	0.00203731
chr15	82372746	82372829	15412050	0	-	0.542169	(0.53,0.59]	chr15	1218601	4	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL9P9	ENSG00000237550.5	ENST00000418824.3:ENST00000466501.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	26	214	2	2.62867	2.76774	2.90681	2.71772e-5	6.06323e-7	6.92689e-4	2.61122e-5
chr22	23894857	23894944	18309774	0	+	0.712644	(0.59,1]	chr22	1555582	2	CDS	CDS:EXON_MRNA	AP000350.10:MIF	ENSG00000251357.4:ENSG00000240972.2	ENST00000433835.3:ENST00000215754.8:ENST00000465752.1:ENST00000498385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	171	2	2.47497	2.7674399999999997	3.05991	0.00177395	1.61521e-5	0.0172819	4.50491e-4
chr1	203023040	203023135	666826	0	+	0.484211	(0.455,0.49]	chr1	67076	1	UTR3	UTR3:EXON_MRNA	TMEM183A	ENSG00000163444.12	ENST00000367242.4	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.53778	2.76724	2.9967	0.00650423	0.00105636	0.0454205	0.0117237
chr2	32515379	32515477	1714034	0	+	0.469388	(0.455,0.49]	chr2	168274	5	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.29155	2.7672049999999997	3.24286	0.00354718	2.77105e-4	0.0291792	0.00444204
chr6	43551297	43551375	7708375	0	-	0.487179	(0.455,0.49]	chr6	591544	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	41	2	2.29155	2.7672049999999997	3.24286	0.00354718	2.77105e-4	0.0291792	0.00444204
chr13	113640823	113640916	13909851	0	+	0.354839	(0.33,0.36]	chr13	1090561	7	UTR3	UTR3:EXON_MRNA	TFDP1	ENSG00000198176.13	ENST00000375370.10	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.6254	2.76706	2.90872	0.00106803	4.00944e-4	0.0124232	0.00548902
chr2	157257893	157257987	2152102	0	+	0.574468	(0.53,0.59]	chr2	198571	3	UTR5	UTR5:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.16037	2.766835	3.3733	0.0529193	0.0254312	0.18423900000000001	0.117089
chr21	43100452	43100490	18271628	0	-	0.552632	(0.53,0.59]	chr21	1549541	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000486519.5:ENST00000463599.5:ENST00000496462.1:ENST00000468039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.16037	2.766835	3.3733	0.0529193	0.0254312	0.18423900000000001	0.117089
chr12	56272586	56272685	13349843	0	-	0.535354	(0.53,0.59]	chr12	1051002	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	136	2	2.66823	2.766755	2.86528	3.38748e-5	1.48354e-5	8.28988e-4	3.81697e-4
chr12	911057	911156	12681695	0	+	0.343434	(0.33,0.36]	chr12	984184	24	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	2.57153	2.766725	2.96192	0.00330025	3.68118e-5	0.028478	8.01235e-4
chr7	44830163	44830263	8800322	0	-	0.32	(0.29,0.33]	chr7	671364	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.57219	2.76654	2.96089	9.93325e-4	5.56633e-4	0.0111014	0.0076748
chr1	65394964	65395032	251271	0	+	0.529412	(0.49,0.53]	chr1	28709	2	CDS	CDS:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.38097	2.76652	3.15207	0.0425419	0.00347189	0.167547	0.0286293
chr16	85674421	85674520	15798097	0	+	0.515152	(0.49,0.53]	chr16	1257094	20	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.38097	2.76652	3.15207	0.0425419	0.00347189	0.167547	0.0286293
chr3	25749487	25749568	3369996	0	+	0.518519	(0.49,0.53]	chr3	294350	1	EXON_PSEUDO	EXON_PSEUDO	RPL32P11	ENSG00000213872.3	ENST00000458542.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	20	2	2.38097	2.76652	3.15207	0.0425419	0.00347189	0.167547	0.0286293
chr9	35725223	35725321	10639794	0	-	0.510204	(0.49,0.53]	chr9	805176	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.38097	2.76652	3.15207	0.0425419	0.00347189	0.167547	0.0286293
chr16	85673034	85673133	15798083	0	+	0.383838	(0.36,0.39]	chr16	1257094	6	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	75	2	2.69282	2.766425	2.84003	1.42904e-4	2.06322e-5	0.00262084	4.99356e-4
chrX	101391754	101391822	18786345	0	+	0.5	(0.49,0.53]	chrX	1601412	1	CDS	CDS:UTR5:EXON_MRNA	RPL36A:RPL36A-HNRNPH2	ENSG00000241343.10:ENSG00000257529.5	ENST00000427805.6:ENST00000614077.4:ENST00000392994.7:ENST00000409338.5:ENST00000553110.8:ENST00000465340.5:ENST00000491851.5:ENST00000409170.3:ENST00000372849.8:ENST00000465744.5:ENST00000471855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	253	2	2.57463	2.766405	2.95818	1.49563e-5	1.00511e-7	4.20622e-4	5.61336e-6
chr5	138575318	138575340	6862573	0	-	0.545455	(0.53,0.59]	chr5	525267	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	2.0693	2.766395	3.46349	0.0160468	9.2216e-4	0.0860154	0.0104432
chr17	1653776	1653856	16401299	0	-	0.525	(0.49,0.53]	chr17	1334842	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000575116.1:ENST00000576585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.30264	2.76635	3.23006	0.0165402	0.00253719	0.087611	0.0233955
chr11	1753408	1753502	12230419	0	-	0.680851	(0.59,1]	chr11	944375	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636579.1:ENST00000636397.1:ENST00000427721.3:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000367196.4:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000637937.1:ENST00000636571.1:ENST00000637158.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	58	2	2.54357	2.7663450000000003	2.9891200000000002	0.00823979	0.00276959	0.0540283	0.0240579
chr16	3751936	3752036	15831391	0	-	0.52	(0.49,0.53]	chr16	1263798	1	SS3_PROX	SS3_PROX:INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2:ENST00000573517.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.41364	2.76628	3.11892	0.0112538	0.00398244	0.0665375	0.0322851
chr2	85326899	85326997	2770182	0	-	0.530612	(0.53,0.59]	chr2	245656	5	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5:ENST00000444342.2	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.13829	2.766225	3.39416	0.00663709	0.00126006	0.046176300000000003	0.013837
chr12	110720389	110720482	13539219	0	-	0.311828	(0.29,0.33]	chr12	1065103	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	135	2	2.32389	2.7662	3.20851	2.89373e-4	3.55137e-8	0.00460301	2.29957e-6
chr10	28610698	28610759	10990533	0	+	0.409836	(0.39,0.42]	chr10	835887	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6:ENST00000495268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	42	2	2.22094	2.76602	3.3111	0.00278158	2.11919e-4	0.0241009	0.00357806
chr2	63588956	63589043	1849943	0	+	0.505747	(0.49,0.53]	chr2	175379	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000485781.5:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000442225.5:ENST00000409476.5:ENST00000485155.1:ENST00000436321.5:ENST00000462944.1:ENST00000454035.5:ENST00000472098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	30	2	2.30189	2.765975	3.23006	0.00685554	0.00253719	0.0471063	0.0233955
chr7	74189672	74189737	8333999	0	+	0.430769	(0.42,0.455]	chr7	634951	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5:ENST00000678341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	53	2	2.27318	2.76595	3.25872	0.00211298	4.85053e-5	0.0198008	0.00110436
chr19	804619	804702	17189505	0	+	0.626506	(0.59,1]	chr19	1411023	5	CDS	CDS:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1:ENST00000585956.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	4	56	2	2.11642	2.76589	3.41536	0.0144884	0.00164655	0.0790431	0.0163443
chr6	32162806	32162850	7118527	0	+	0.477273	(0.455,0.49]	chr6	546943	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	49	2	2.29155	2.76584	3.24013	0.00354718	5.30989e-5	0.0291792	0.00118379
chr1	44760279	44760347	173992	0	+	0.514706	(0.49,0.53]	chr1	22377	1	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.59881	2.765815	2.93282	0.00184545	3.30011e-4	0.0178046	0.00504024
chr1	44762398	44762451	174021	0	+	0.528302	(0.49,0.53]	chr1	22394	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000423289.1:ENST00000472235.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	35	2	2.30147	2.765765	3.23006	0.0033367	0.00253719	0.0278556	0.0233955
chr19	1440362	1440462	17193295	0	+	0.62	(0.59,1]	chr19	1412202	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	305	2	2.72417	2.765715	2.80726	2.74921e-5	2.39792e-5	6.97903e-4	5.65952e-4
chr7	103362016	103362077	8441649	0	+	0.491803	(0.49,0.53]	chr7	645093	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000460021.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	29	2	2.38097	2.765705	3.15044	0.0425419	4.32676e-4	0.167547	0.00583708
chr11	114407531	114407619	12150130	0	+	0.443182	(0.42,0.455]	chr11	935847	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RBM7:RP11-212D19.4	ENSG00000076053.12:ENSG00000255663.1	ENST00000540163.5:ENST00000541475.5:ENST00000544313.5:ENST00000544582.1:ENST00000375490.10:ENST00000542140.5:ENST00000545678.1:ENST00000544347.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	1.87159	2.765685	3.65978	0.0214479	2.09396e-5	0.102998	5.04211e-4
chr7	141743630	141743701	8575595	0	+	0.422535	(0.42,0.455]	chr7	654295	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	44	2	1.87159	2.765685	3.65978	0.0214479	2.09396e-5	0.102998	5.04211e-4
chr8	102254301	102254401	9982634	0	-	0.37	(0.36,0.39]	chr8	753098	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000517465.1:ENST00000521922.5:ENST00000518205.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.69035	2.76562	2.84089	0.0128123	0.00123789	0.0719798	0.013161
chr12	21642038	21642125	13236674	0	-	0.425287	(0.42,0.455]	chr12	1037962	2	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	91	2	2.69779	2.7656	2.83341	5.67322e-5	2.25234e-5	0.00114271	5.90626e-4
chr12	31791996	31792066	13283317	0	-	0.6	(0.59,1]	chr12	1041531	3	CDS	CDS:EXON_MRNA	H3-5	ENSG00000188375.5	ENST00000340398.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.76006	2.765575	2.77109	0.00331425	0.00330486	0.0285314	0.027613
chr5	177306470	177306570	6406836	0	+	0.59	(0.53,0.59]	chr5	498064	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000504594.5:ENST00000503216.5:ENST00000503853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	2.5766	2.765485	2.95437	8.34608e-4	2.85501e-4	0.00978328	0.00456926
chr21	14485324	14485422	18163796	0	-	0.265306	[0,0.29]	chr21	1542428	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	1.65198	2.765165	3.87835	0.0369328	1.0775e-4	0.151225	0.00192514
chr6	42956680	42956765	7706413	0	-	0.505882	(0.49,0.53]	chr6	590978	5	EXON_PSEUDO	EXON_PSEUDO	RPL24P4	ENSG00000181524.6	ENST00000326586.6	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	116	2	2.27237	2.76501	3.25765	8.3391e-4	4.16199e-7	0.0102956	1.89117e-5
chr2	54972573	54972670	2666099	0	-	0.257732	[0,0.29]	chr2	238467	5	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5	protein_coding	protein_coding	protein_coding	protein_coding	48	203	2	2.57401	2.7649299999999997	2.95585	8.67044e-7	4.75681e-7	3.54377e-5	2.36395e-5
chr22	40953554	40953633	18377861	0	+	0.481013	(0.455,0.49]	chr22	1564035	1	CDS	CDS:EXON_MRNA	RBX1	ENSG00000100387.9	ENST00000476110.1:ENST00000216225.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.53286	2.76478	2.9967	0.0282409	0.00650423	0.124386	0.0454205
chr8	1826335	1826435	9173133	0	+	0.47	(0.455,0.49]	chr8	700302	2	SS5_PROX	SS5_PROX:INTRON	KBTBD11-OT1:ARHGEF10	ENSG00000283239.1:ENSG00000104728.16	ENST00000635855.1:ENST00000635773.1:ENST00000636175.1:ENST00000349830.8:ENST00000520359.5:ENST00000518288.5:ENST00000398564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.53286	2.76478	2.9967	0.0282409	0.00650423	0.124386	0.0454205
chr3	141876615	141876708	3789684	0	+	0.72043	(0.59,1]	chr3	323443	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	60	2	2.60638	2.76459	2.9228	0.00981698	0.00223524	0.0612992	0.021278
chr14	68421697	68421796	14684575	0	-	0.484848	(0.455,0.49]	chr14	1149918	1	EXON_PSEUDO	EXON_PSEUDO	PPIAP6	ENSG00000258477.1	ENST00000557078.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	41	2	2.16841	2.764455	3.3605	0.00221684	0.00147278	0.0205155	0.0157578
chr10	97750330	97750400	11214527	0	+	0.514286	(0.49,0.53]	chr10	853256	1	CDS	CDS:EXON_MRNA	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5:ENST00000481956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.53011	2.7643	2.99849	0.00630123	0.00254862	0.0445415	0.0227869
chr6	149683410	149683508	8018501	0	-	0.520408	(0.49,0.53]	chr6	612683	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5:ENST00000392273.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	2.53011	2.7643	2.99849	0.00630123	0.00254862	0.0445415	0.0227869
chr1	156317480	156317547	1314112	0	-	0.477612	(0.455,0.49]	chr1	133427	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	81	2	2.2939600000000002	2.76429	3.23462	7.7445e-4	4.87179e-6	0.00966722	1.51951e-4
chr19	23927487	23927587	17277012	0	+	0.47	(0.455,0.49]	chr19	1427796	37	INTRON	INTRON	ZNF726	ENSG00000213967.11	ENST00000334589.9:ENST00000322487.11:ENST00000594466.6:ENST00000575986.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.69053	2.7642249999999997	2.83792	0.0182983	0.0110512	0.0925808	0.0665375
chr3	8941466	8941566	4025252	0	-	0.49	(0.455,0.49]	chr3	337853	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RAD18	ENSG00000070950.10	ENST00000264926.7:ENST00000415439.5:ENST00000495087.5:ENST00000418463.5:ENST00000421052.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.69053	2.7642249999999997	2.83792	0.0182983	0.0110512	0.0925808	0.0665375
chr4	38690461	38690558	4796590	0	+	0.463918	(0.455,0.49]	chr4	395570	7	UTR3	UTR3:EXON_MRNA:INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.69053	2.7642249999999997	2.83792	0.0182983	0.0110512	0.0925808	0.0665375
chr6	131693496	131693560	7403248	0	+	0.46875	(0.455,0.49]	chr6	567430	1	CDS	CDS:EXON_MRNA	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.69053	2.7642249999999997	2.83792	0.0182983	0.0110512	0.0925808	0.0665375
chr9	109050569	109050630	10788084	0	-	0.47541	(0.455,0.49]	chr9	816834	1	CDS	CDS:UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.69053	2.7642249999999997	2.83792	0.0182983	0.0110512	0.0925808	0.0665375
chr22	19508610	19508691	18295662	0	+	0.567901	(0.53,0.59]	chr22	1552793	2	CDS	CDS:UTR3:EXON_MRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	77	2	2.33159	2.7641799999999996	3.19677	0.00153017	1.94039e-5	0.0155189	5.22287e-4
chr16	88734874	88734963	16074636	0	-	0.561798	(0.53,0.59]	chr16	1291732	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	10	85	2	2.51629	2.76411	3.01193	5.70328e-4	2.62179e-5	0.00779621	6.06365e-4
chr21	8401459	8401559	18041545	0	+	0.47	(0.455,0.49]	chr21	1530863	58	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2236	13767	2	2.52314	2.764105	3.00507	1.02788e-7	3.35925e-10	5.71122e-6	4.41571e-8
chrX	153691386	153691469	18915592	0	+	0.614458	(0.59,1]	chrX	1611175	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000675713.1:ENST00000466243.1:ENST00000467402.1:ENST00000429147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	133	2	2.50936	2.763805	3.01825	0.00161521	5.35039e-5	0.016933900000000002	0.0010871
chr16	3371997	3372093	15829272	0	-	0.40625	(0.39,0.42]	chr16	1263253	2	UTR5	UTR5:EXON_MRNA	MTRNR2L4	ENSG00000232196.4	ENST00000399974.5	protein_coding	protein_coding	protein_coding	protein_coding	77	506	2	2.22653	2.76374	3.30095	1.43437e-5	4.22818e-10	4.04811e-4	4.89428e-8
chr12	79775040	79775139	13433695	0	-	0.333333	(0.33,0.36]	chr12	1057192	16	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	2.76165	2.763575	2.7655	0.0175892	6.90648e-5	0.0918323	0.00133641
chr1	40073481	40073577	954670	0	-	0.447917	(0.42,0.455]	chr1	100850	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	87	2	2.66091	2.76349	2.86607	1.39513e-4	1.71234e-5	0.0025618	4.319e-4
chr3	49097991	49098086	4172424	0	-	0.526316	(0.49,0.53]	chr3	350334	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000497635.5:ENST00000487495.5:ENST00000494984.5:ENST00000414533.5:ENST00000634473.1:ENST00000464962.6:ENST00000634336.1:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000466179.2:ENST00000637543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	53	2	2.01464	2.7634600000000002	3.51228	0.0205094	7.99738e-6	0.0991175	2.28719e-4
chr13	46158825	46158907	14009947	0	-	0.414634	(0.39,0.42]	chr13	1098577	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5:ENST00000442275.1	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.74243	2.7632149999999998	2.784	0.00369167	0.00261393	0.030936	0.0230705
chr3	186784563	186784629	3958222	0	+	0.378788	(0.36,0.39]	chr3	333847	1	CDS	CDS:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000441007.5:ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000491473.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	47	2	2.61601	2.7631050000000004	2.9102	5.15161e-4	3.36245e-4	0.00719513	0.00474861
chr11	2945410	2945508	12233398	0	-	0.336735	(0.33,0.36]	chr11	944838	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	38	2	2.54998	2.76295	2.97592	0.00106635	4.1482e-4	0.0118238	0.00607555
chr3	128486276	128486368	4441177	0	-	0.695652	(0.59,1]	chr3	368941	7	CDS	CDS:EXON_MRNA	GATA2	ENSG00000179348.12	ENST00000341105.7:ENST00000430265.6:ENST00000487848.5:ENST00000492608.1	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.53147	2.762925	2.99438	0.00807544	0.00776449	0.0531324	0.050813
chr2	61483936	61484020	2690404	0	-	0.392857	(0.39,0.42]	chr2	240336	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	98	2	2.74048	2.762875	2.78527	4.87052e-5	1.12554e-5	0.00110855	3.04521e-4
chr18	9914256	9914335	16755717	0	+	0.607595	(0.59,1]	chr18	1381748	1	CDS_START	CDS_START:CDS:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	72	2	1.48516	2.76281	4.04046	0.047789	9.42839e-5	0.18008	0.0017195000000000001
chr10	811847	811945	11337475	0	-	0.479592	(0.455,0.49]	chr10	864510	25	UTR3	UTR3:EXON_MRNA:INTRON	LARP4B	ENSG00000107929.15	ENST00000614908.4:ENST00000316157.8:ENST00000609318.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.04847	2.7625900000000003	3.47671	0.0368644	0.0192065	0.145024	0.0943643
chr10	102160634	102160726	11226661	0	+	0.543478	(0.53,0.59]	chr10	854863	3	CDS	CDS:UTR3:EXON_MRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.50447	2.762505	3.02054	0.0301162	0.00577011	0.130016	0.0426551
chr3	170128876	170128972	4573906	0	-	0.520833	(0.49,0.53]	chr3	378573	3	CDS	CDS:EXON_MRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	1.76393	2.76246	3.76099	0.0279906	2.00194e-4	0.123926	0.0034021
chr1	23794513	23794600	99047	0	+	0.586207	(0.53,0.59]	chr1	11564	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LYPLA2	ENSG00000011009.11	ENST00000374514.8:ENST00000374505.6:ENST00000374503.7:ENST00000495365.5:ENST00000374502.7:ENST00000492577.1:ENST00000374501.1:ENST00000472213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr11	65536693	65536750	11985161	0	+	0.578947	(0.53,0.59]	chr11	920476	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCYL1	ENSG00000142186.17	ENST00000525364.5:ENST00000270176.10:ENST00000420247.6:ENST00000533862.5:ENST00000524944.5:ENST00000527009.5:ENST00000279270.10:ENST00000531601.1:ENST00000524897.5:ENST00000528545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr12	54409484	54409540	13343886	0	-	0.571429	(0.53,0.59]	chr12	1049843	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr19	14162694	14162783	17478981	0	-	0.561798	(0.53,0.59]	chr19	1464342	2	CDS	CDS:EXON_MRNA	ADGRL1	ENSG00000072071.16	ENST00000340736.10:ENST00000361434.7	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr2	74361498	74361598	2742029	0	-	0.58	(0.53,0.59]	chr2	244131	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-287D1.3:DCTN1	ENSG00000264324.1:ENSG00000204843.13	ENST00000451608.2:ENST00000394003.7:ENST00000361874.8:ENST00000680606.1:ENST00000628224.3:ENST00000497666.1:ENST00000491465.5:ENST00000434055.5:ENST00000409240.5:ENST00000409438.5:ENST00000633691.1:ENST00000409868.5:ENST00000466110.5:ENST00000409567.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr20	36500220	36500320	17776322	0	+	0.58	(0.53,0.59]	chr20	1501830	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10:ENST00000373907.6:ENST00000475894.5:ENST00000482872.5:ENST00000495241.5:ENST00000340491.8:ENST00000479220.5:ENST00000489701.5:ENST00000479951.1:ENST00000478910.5:ENST00000497862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr8	37872988	37873083	9794311	0	-	0.536842	(0.53,0.59]	chr8	740411	19	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5:ENST00000523182.5:ENST00000522774.1:ENST00000524118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr9	122392444	122392544	10452773	0	+	0.59	(0.53,0.59]	chr9	787093	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PTGS1	ENSG00000095303.17	ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.515	2.7624500000000003	3.0099	0.0292633	0.00600486	0.129773	0.042887
chr3	33866823	33866922	3399906	0	+	0.30303	(0.29,0.33]	chr3	295769	4	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	60	2	2.42855	2.7623949999999997	3.09624	2.32642e-4	2.81203e-5	0.00355641	7.10141e-4
chr1	77962769	77962849	1112816	0	-	0.375	(0.36,0.39]	chr1	111884	1	CDS	CDS:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	37	2	2.63702	2.76232	2.88762	0.00212882	4.35345e-4	0.0206577	0.005869
chr12	118031851	118031947	13108824	0	+	0.333333	(0.33,0.36]	chr12	1023088	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.51887	2.7622999999999998	3.00573	0.0358636	0.00630535	0.147298	0.044701
chr2	58159429	58159511	1830034	0	+	0.341463	(0.33,0.36]	chr2	174307	2	CDS	CDS:UTR3:EXON_MRNA	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.51887	2.7622999999999998	3.00573	0.0358636	0.00630535	0.147298	0.044701
chr3	52415679	52415778	3477982	0	+	0.353535	(0.33,0.36]	chr3	304588	7	INTRON	INTRON	PHF7	ENSG00000010318.21	ENST00000327906.8:ENST00000347025.6:ENST00000614886.4:ENST00000472337.5:ENST00000615126.1:ENST00000461861.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.51887	2.7622999999999998	3.00573	0.0358636	0.00630535	0.147298	0.044701
chr4	67617211	67617310	5452643	0	-	0.333333	(0.33,0.36]	chr4	436027	47	UTR3	UTR3:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.51887	2.7622999999999998	3.00573	0.0358636	0.00630535	0.147298	0.044701
chrX	139728800	139728899	19258540	0	-	0.333333	(0.33,0.36]	chrX	1635793	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000327569.7:ENST00000361648.6:ENST00000433868.5:ENST00000450801.1:ENST00000460773.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.51887	2.7622999999999998	3.00573	0.0358636	0.00630535	0.147298	0.044701
chr6	33250650	33250745	7668733	0	-	0.568421	(0.53,0.59]	chr6	587357	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	35	2	2.504	2.76227	3.02054	0.00577011	0.00279409	0.0426551	0.0241702
chr6	125979872	125979934	7935890	0	-	0.532258	(0.53,0.59]	chr6	607387	2	EXON_SMALL	EXON_SMALL	RNA5SP216	ENSG00000251920.1	ENST00000516111.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	147	1099	2	2.454	2.762135	3.07027	9.39556e-7	5.85675e-9	3.79655e-5	5.3234e-7
chr3	14478516	14478568	3320763	0	+	0.365385	(0.36,0.39]	chr3	292269	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	31	2	2.45656	2.761905	3.06725	0.0100637	2.06648e-4	0.0624019	0.00350209
chr16	88734355	88734446	16074628	0	-	0.659341	(0.59,1]	chr16	1291726	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.03921	2.76189	3.48457	0.0371471	1.16515e-4	0.151849	0.0020505
chr8	30104299	30104390	9252503	0	+	0.373626	(0.36,0.39]	chr8	708851	1	CDS	CDS:UTR5:EXON_MRNA	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5:ENST00000518192.5:ENST00000519466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	33	2	2.63521	2.761415	2.88762	0.00633242	4.35345e-4	0.0446708	0.005869
chr1	205616545	205616644	1461587	0	-	0.515152	(0.49,0.53]	chr1	147400	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	49	2	2.35273	2.761295	3.16986	0.00139962	3.95698e-4	0.0144327	0.00587341
chr1	158613720	158613793	1322417	0	-	0.534247	(0.53,0.59]	chr1	134990	1	CDS	CDS:EXON_MRNA	SPTA1	ENSG00000163554.15	ENST00000643759.2:ENST00000481212.5:ENST00000498708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	1.90953	2.761235	3.61294	0.0517711	0.0310038	0.193577	0.130016
chr12	2801276	2801356	12696848	0	+	0.55	(0.53,0.59]	chr12	984973	3	CDS	CDS:EXON_MRNA	FKBP4	ENSG00000004478.8	ENST00000001008.6:ENST00000539181.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.90953	2.761235	3.61294	0.0517711	0.0310038	0.193577	0.130016
chr12	50099000	50099094	12870517	0	+	0.574468	(0.53,0.59]	chr12	999966	1	UTR3	UTR3:EXON_MRNA	SMARCD1	ENSG00000066117.15	ENST00000381513.8:ENST00000394963.9:ENST00000548573.5:ENST00000549274.1:ENST00000550280.1:ENST00000551352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	1.90953	2.761235	3.61294	0.0517711	0.0310038	0.193577	0.130016
chr15	60382341	60382441	15317062	0	-	0.46	(0.455,0.49]	chr15	1208987	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	42	2	2.59329	2.7611499999999998	2.92901	0.00141135	7.86326e-4	0.0151901	0.00929193
chr11	34131455	34131531	11905801	0	+	0.526316	(0.49,0.53]	chr11	909673	2	CDS	CDS:EXON_MRNA:INTRON	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000527971.5:ENST00000615292.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.60116	2.76099	2.92082	0.00827037	0.0056515	0.0534766	0.0422191
chr2	74214242	74214339	1891741	0	+	0.391753	(0.39,0.42]	chr2	179209	1	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	61	2	2.02663	2.7609649999999997	3.4953	0.0130764	2.01012e-6	0.0729985	7.18317e-5
chr4	165333470	165333547	5206864	0	+	0.324675	(0.29,0.33]	chr4	420257	1	CDS	CDS:EXON_MRNA:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.63813	2.760805	2.88348	0.00803229	6.59632e-5	0.0528968	0.00128696
chr16	57154193	57154289	15961641	0	-	0.5	(0.49,0.53]	chr16	1280196	19	UTR3	UTR3:EXON_MRNA	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566403.5:ENST00000389447.9:ENST00000565956.5:ENST00000566077.5:ENST00000569266.5:ENST00000567439.5:ENST00000564108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.26641	2.7607749999999998	3.25514	0.0190546	0.00227467	0.093872	0.0209546
chr22	41636600	41636685	18381434	0	+	0.458824	(0.455,0.49]	chr22	1564687	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.78554	2.760715	3.73589	0.0178667	2.30579e-4	0.0936098	0.00382267
chr14	96566820	96566919	14476252	0	+	0.363636	(0.36,0.39]	chr14	1130890	19	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	2.35478	2.7604949999999997	3.16621	0.00193274	8.32577e-5	0.0192272	0.00157156
chr1	41046502	41046598	956741	0	-	0.5625	(0.53,0.59]	chr1	101262	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCMH1	ENSG00000010803.16	ENST00000397171.6:ENST00000361191.9:ENST00000361705.7:ENST00000402904.6:ENST00000397174.6:ENST00000372597.5:ENST00000372596.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000456518.3:ENST00000498793.5:ENST00000489421.1:ENST00000482530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	30	2	1.90953	2.76043	3.61133	0.0517711	4.55298e-4	0.193577	0.00608573
chr14	96566624	96566722	14476250	0	+	0.387755	(0.36,0.39]	chr14	1130890	17	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	13	67	2	2.43865	2.76028	3.08191	1.78909e-4	4.1566e-5	0.00312479	8.8376e-4
chr16	3664273	3664366	15830539	0	-	0.569892	(0.53,0.59]	chr16	1263621	1	CDS	CDS:EXON_MRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5	protein_coding	protein_coding	protein_coding	protein_coding	6	53	2	2.72478	2.7600800000000003	2.79538	0.00324675	2.47731e-4	0.0282494	0.00374232
chr19	48872497	48872574	17367577	0	+	0.61039	(0.59,1]	chr19	1442090	2	UTR5	UTR5:EXON_MRNA	PPP1R15A	ENSG00000087074.8	ENST00000200453.6	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.66274	2.759775	2.85681	0.00482151	0.00235278	0.0365653	0.0222204
chr5	69365438	69365537	6625902	0	-	0.444444	(0.42,0.455]	chr5	511949	5	CDS	CDS:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8:ENST00000503245.5:ENST00000509462.5:ENST00000504109.5:ENST00000512152.5:ENST00000508954.3	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	2.52254	2.7596	2.99666	0.00104775	5.58298e-4	0.0123035	0.00709272
chr7	65979818	65979911	8834576	0	-	0.666667	(0.59,1]	chr7	674606	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5:ENST00000479038.1:ENST00000475316.5:ENST00000476486.5:ENST00000446111.1:ENST00000478118.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	74	2	2.50474	2.75953	3.01432	0.0032572	0.00121259	0.02728	0.0135383
chrM	9599	9696	19377235	0	+	0.402062	(0.39,0.42]	chrM	1649818	4	CDS	CDS:EXON_MRNA	MT-CO3	ENSG00000198938.2	ENST00000362079.2	protein_coding	protein_coding	protein_coding	protein_coding	69	391	2	2.69399	2.75952	2.82505	3.63442e-7	4.59449e-8	1.68123e-5	3.17035e-6
chr13	46127295	46127393	14009613	0	-	0.336735	(0.33,0.36]	chr13	1098488	15	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.16995	2.75944	3.34893	0.0124739	2.22813e-4	0.0713206	0.00370775
chr3	155903862	155903960	3824309	0	+	0.336735	(0.33,0.36]	chr3	326167	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7:ENST00000476145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	39	2	2.73087	2.75936	2.78785	0.00115378	3.90949e-4	0.0130851	0.00538091
chr17	47684148	47684245	16252005	0	+	0.474227	(0.455,0.49]	chr17	1316763	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	63	2	2.60247	2.7593449999999997	2.91622	8.0052e-4	4.8361e-5	0.00996169	9.97179e-4
chrX	49345796	49345859	18694707	0	+	0.587302	(0.53,0.59]	chrX	1594883	1	CDS	CDS:EXON_MRNA	GAGE2E	ENSG00000275113.1	ENST00000621907.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.30988	2.75931	3.20874	0.00643853	0.00278422	0.0452349	0.0241009
chr2	170992300	170992399	3010646	0	-	0.313131	(0.29,0.33]	chr2	266766	16	UTR3	UTR3:EXON_MRNA	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	39	2	2.48886	2.7592499999999998	3.02964	0.0055888	6.35336e-5	0.0419759	0.00124813
chr19	34396300	34396365	17300522	0	+	0.538462	(0.53,0.59]	chr19	1429880	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1:ENST00000592740.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	113	2	2.71083	2.759245	2.80766	2.30272e-4	1.50265e-5	0.00382267	3.84261e-4
chr3	141614659	141614757	3788042	0	+	0.306122	(0.29,0.33]	chr3	323306	25	UTR3	UTR3:EXON_MRNA	RASA2	ENSG00000155903.13	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.38576	2.75894	3.13212	0.0439193	0.00551048	0.163572	0.0414592
chr8	26408301	26408376	9238632	0	+	0.426667	(0.42,0.455]	chr8	707576	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000520077.5:ENST00000523949.5:ENST00000523515.5:ENST00000520409.5:ENST00000518611.5:ENST00000521254.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.20599	2.7588	3.31161	0.0227797	0.00186138	0.105293	0.018635
chr9	92031616	92031710	10735625	0	-	0.255319	[0,0.29]	chr9	812061	6	UTR3	UTR3:EXON_MRNA:INTRON	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	1.81505	2.758785	3.70252	0.0409713	2.87026e-4	0.163285	0.00422471
chr19	14514963	14515060	17480904	0	-	0.43299	(0.42,0.455]	chr19	1464580	3	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.70611	2.75874	2.81137	0.0120386	0.00397496	0.0700876	0.0322851
chr2	131125752	131125828	2065505	0	+	0.434211	(0.42,0.455]	chr2	194057	1	CDS	CDS:EXON_MRNA	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000482225.1:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.70611	2.75874	2.81137	0.0120386	0.00397496	0.0700876	0.0322851
chr1	3629269	3629365	13225	0	+	0.34375	(0.33,0.36]	chr1	2228	8	UTR3	UTR3:EXON_MRNA	TPRG1L	ENSG00000158109.15	ENST00000378344.7:ENST00000344579.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.75192	2.7587099999999998	2.7655	0.0175892	0.00318114	0.0918323	0.0267094
chr2	195713432	195713492	2290703	0	+	0.333333	(0.33,0.36]	chr2	207610	1	CDS	CDS:UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10:ENST00000465851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.75192	2.7587099999999998	2.7655	0.0175892	0.00318114	0.0918323	0.0267094
chr3	50330680	50330727	4177621	0	-	0.489362	(0.455,0.49]	chr3	351716	1	CDS	CDS:UTR3:EXON_MRNA	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	24	2	2.66563	2.758675	2.85172	0.010864	0.0043075	0.0643837	0.0334284
chr4	56400847	56400911	5434723	0	-	0.46875	(0.455,0.49]	chr4	435063	2	CDS	CDS:EXON_MRNA	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000425339.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.66563	2.758675	2.85172	0.010864	0.0043075	0.0643837	0.0334284
chr20	35654036	35654134	17954999	0	-	0.530612	(0.53,0.59]	chr20	1521109	6	CDS	CDS:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.29789	2.7586500000000003	3.21941	0.00674768	0.00266171	0.0468196	0.0240332
chr10	73766085	73766147	11115814	0	+	0.451613	(0.42,0.455]	chr10	845885	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.32646	2.75862	3.19078	0.00624136	0.00310864	0.0443844	0.0274272
chr17	59973729	59973828	16619886	0	-	0.434343	(0.42,0.455]	chr17	1365721	91	INTRON	INTRON	TBC1D3P1-DHX40P1	ENSG00000267104.2	ENST00000587125.1	lncRNA	lncRNA	lncRNA	lncRNA	3	23	2	2.32629	2.758535	3.19078	0.0153564	0.00310864	0.0832114	0.0274272
chr19	1037997	1038094	17190845	0	+	0.556701	(0.53,0.59]	chr19	1411408	2	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000568865.3:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	61	2	1.90598	2.7584999999999997	3.61102	0.00735883	3.01487e-5	0.0490627	6.78876e-4
chr3	4981391	4981453	3277621	0	+	0.419355	(0.39,0.42]	chr3	288713	1	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1:ENST00000460806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	2.70591	2.758485	2.81106	0.0185716	6.4431e-4	0.0932453	0.00799617
chr1	32330767	32330837	128501	0	+	0.514286	(0.49,0.53]	chr1	15937	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5:ENST00000484305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	26	2	1.99044	2.7584049999999998	3.52637	0.0435903	6.68602e-4	0.170594	0.00820018
chr1	155253624	155253678	1307246	0	-	0.518519	(0.49,0.53]	chr1	132072	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM189B	ENSG00000160767.21	ENST00000361361.7:ENST00000350210.6:ENST00000368368.7:ENST00000621094.4:ENST00000487649.5:ENST00000491082.1:ENST00000472550.5:ENST00000481822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	1.99044	2.7584049999999998	3.52637	0.0435903	6.68602e-4	0.170594	0.00820018
chr1	53246357	53246451	1022043	0	-	0.425532	(0.42,0.455]	chr1	106101	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000653810.1:ENST00000657047.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000529670.6:ENST00000480045.6:ENST00000654834.1:ENST00000653217.1:ENST00000669432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.3259	2.75834	3.19078	0.0484606	0.00310864	0.175495	0.0274272
chr11	70436191	70436281	12007138	0	+	0.566667	(0.53,0.59]	chr11	924899	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTTN	ENSG00000085733.16	ENST00000346329.7:ENST00000301843.13:ENST00000376561.7:ENST00000529736.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	1.89806	2.75831	3.61856	0.0532477	0.0303021	0.184818	0.129773
chr3	33092933	33093026	4111932	0	-	0.55914	(0.53,0.59]	chr3	343556	1	CDS	CDS:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	1.89806	2.75831	3.61856	0.0532477	0.0303021	0.184818	0.129773
chr3	195781668	195781767	4661083	0	-	0.545455	(0.53,0.59]	chr3	385270	30	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	1.89806	2.75831	3.61856	0.0532477	0.0303021	0.184818	0.129773
chr3	196323816	196323916	4664787	0	-	0.58	(0.53,0.59]	chr3	385844	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TM4SF19-DYNLT2B:TM4SF19	ENSG00000273331.1:ENSG00000145107.16	ENST00000442633.1:ENST00000446879.5:ENST00000440822.2:ENST00000273695.4:ENST00000454715.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	1.89806	2.75831	3.61856	0.0532477	0.0303021	0.184818	0.129773
chr3	31637228	31637325	3392509	0	+	0.360825	(0.36,0.39]	chr3	295101	13	UTR3	UTR3:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.33018	2.7583	3.18642	0.00359152	0.0030776	0.0302391	0.0261799
chr5	82276464	82276518	6672998	0	-	0.462963	(0.455,0.49]	chr5	515064	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5:ENST00000503605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	135	2	2.65694	2.758215	2.85949	7.76094e-5	1.47932e-6	0.00162479	5.57052e-5
chr17	29261338	29261438	16490882	0	-	0.33	(0.29,0.33]	chr17	1348880	56	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.17855	2.7579599999999997	3.33737	0.0183673	7.07571e-6	0.0928041	2.08408e-4
chr19	10317673	10317773	17459307	0	-	0.69	(0.59,1]	chr19	1460722	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.5215	2.75794	2.99438	0.032241	0.00776449	0.135671	0.050813
chr12	31282711	31282811	13279805	0	-	0.56	(0.53,0.59]	chr12	1041230	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	1.69162	2.7578449999999997	3.82407	0.0342431	0.0179666	0.141233	0.0918323
chr11	57801745	57801845	11953075	0	+	0.53	(0.49,0.53]	chr11	914823	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	35	2	2.56183	2.75784	2.95385	0.0261296	2.87717e-4	0.118976	0.00423277
chr8	11838807	11838906	9202070	0	+	0.525253	(0.49,0.53]	chr8	703065	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	35	2	2.56183	2.75784	2.95385	0.0261296	2.87717e-4	0.118976	0.00423277
chr22	31620552	31620632	18473632	0	-	0.575	(0.53,0.59]	chr22	1576729	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PISD	ENSG00000241878.11	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	47	2	1.8935	2.75777	3.62204	0.00775741	4.3021e-4	0.050813	0.00620274
chr14	103912287	103912381	14797138	0	-	0.404255	(0.39,0.42]	chr14	1159806	1	UTR3	UTR3:EXON_MRNA	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	1.99911	2.7577350000000003	3.51636	0.0477207	6.99837e-4	0.17993	0.00846751
chr1	110009054	110009145	401777	0	+	0.505495	(0.49,0.53]	chr1	39265	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1:ENST00000359172.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.51671	2.7576	2.99849	0.00768763	0.00630123	0.050396	0.0445415
chr12	908692	908792	12681671	0	+	0.52	(0.49,0.53]	chr12	984183	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000540885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	39	2	2.72712	2.757425	2.78773	0.00257389	9.78408e-4	0.0235767	0.0109424
chr3	170394871	170394969	3879646	0	+	0.295918	(0.29,0.33]	chr3	328741	26	UTR3	UTR3:EXON_MRNA	SKIL	ENSG00000136603.14	ENST00000259119.9:ENST00000458537.7	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.59395	2.7573	2.92065	0.0249836	0.0117842	0.114013	0.0686664
chr5	134751135	134751228	6231018	0	+	0.301075	(0.29,0.33]	chr5	485307	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAMLG	ENSG00000164615.6	ENST00000678771.1:ENST00000676819.1:ENST00000677273.1:ENST00000676829.1:ENST00000297156.4:ENST00000514518.1:ENST00000677966.1:ENST00000676928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	13	2	2.59395	2.7573	2.92065	0.0249836	0.0117842	0.114013	0.0686664
chr6	116276735	116276834	7908880	0	-	0.313131	(0.29,0.33]	chr6	605657	20	UTR3	UTR3:EXON_MRNA:INTRON	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.59395	2.7573	2.92065	0.0249836	0.0117842	0.114013	0.0686664
chr7	55999164	55999256	8290402	0	+	0.315217	(0.29,0.33]	chr7	631447	2	UTR3	UTR3:EXON_MRNA	NIPSNAP2	ENSG00000146729.10	ENST00000446778.5:ENST00000322090.8:ENST00000497279.5:ENST00000415967.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.59395	2.7573	2.92065	0.0249836	0.0117842	0.114013	0.0686664
chr7	105565815	105565915	8974501	0	-	0.33	(0.29,0.33]	chr7	686875	2	SS3_PROX	SS3_PROX:INTRON	EFCAB10	ENSG00000185055.11	ENST00000469099.5:ENST00000480514.6:ENST00000485614.5	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.59395	2.7573	2.92065	0.0249836	0.0117842	0.114013	0.0686664
chr1	109213917	109213992	397861	0	+	0.666667	(0.59,1]	chr1	38544	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000482384.1:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	36	2	2.32455	2.757275	3.19	0.0520547	0.0039188	0.193787	0.0314356
chr7	87907673	87907771	8369122	0	+	0.367347	(0.36,0.39]	chr7	638147	6	CDS	CDS:UTR3:EXON_MRNA	DBF4	ENSG00000006634.8	ENST00000413643.5:ENST00000265728.6:ENST00000431138.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	2.18188	2.757145	3.33241	0.00600314	0.00193631	0.042887	0.0192272
chr12	54351279	54351373	12892167	0	+	0.43617	(0.42,0.455]	chr12	1003028	9	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000262061.7	protein_coding	protein_coding	protein_coding	protein_coding	8	72	2	1.7601	2.75685	3.7536	0.0312663	2.51614e-7	0.132093	1.23584e-5
chr6	85637037	85637108	7826026	0	-	0.408451	(0.39,0.42]	chr6	599592	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	1.84882	2.756745	3.66467	0.0214409	3.60066e-4	0.102904	0.00544157
chr7	107236449	107236528	8983301	0	-	0.468354	(0.455,0.49]	chr7	687306	1	CDS	CDS:EXON_MRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000464542.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	36	2	1.96875	2.7566800000000002	3.54461	0.0480352	4.40117e-5	0.180552	9.24938e-4
chr7	103086696	103086764	8440822	0	+	0.279412	[0,0.29]	chr7	644956	2	CDS	CDS:UTR3:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1:ENST00000431642.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.4397	2.7566	3.0735	0.0388194	0.00785095	0.149227	0.0520241
chr8	25506697	25506791	9236537	0	+	0.255319	[0,0.29]	chr8	707394	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000521098.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.4397	2.7566	3.0735	0.0388194	0.00785095	0.149227	0.0520241
chr12	62404192	62404275	12914526	0	+	0.421687	(0.42,0.455]	chr12	1006516	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549415.1:ENST00000548620.1:ENST00000552346.1:ENST00000549101.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.57051	2.75657	2.94263	0.0265466	0.00766873	0.120071	0.0503696
chr19	3052909	3052999	17426910	0	-	0.444444	(0.42,0.455]	chr19	1453929	1	UTR3	UTR3:EXON_MRNA	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000592414.1:ENST00000586742.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.57051	2.75657	2.94263	0.0265466	0.00766873	0.120071	0.0503696
chr19	39179170	39179268	17325287	0	+	0.438776	(0.42,0.455]	chr19	1434602	7	UTR3	UTR3:EXON_MRNA	PAK4	ENSG00000130669.17	ENST00000321944.8:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000360442.7	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.57051	2.75657	2.94263	0.0265466	0.00766873	0.120071	0.0503696
chr3	133588454	133588549	3750852	0	+	0.431579	(0.42,0.455]	chr3	321181	2	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.57051	2.75657	2.94263	0.0265466	0.00766873	0.120071	0.0503696
chr5	65571927	65572017	6002421	0	+	0.422222	(0.42,0.455]	chr5	470144	2	CDS	CDS:UTR3:EXON_MRNA	PPWD1	ENSG00000113593.12	ENST00000535264.5:ENST00000538977.5:ENST00000261308.10:ENST00000510930.5:ENST00000511908.5:ENST00000505380.1:ENST00000507608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.57051	2.75657	2.94263	0.0265466	0.00766873	0.120071	0.0503696
chr6	29602696	29602790	7654848	0	-	0.43617	(0.42,0.455]	chr6	583380	6	UTR3	UTR3:EXON_MRNA:INTRON	GABBR1	ENSG00000204681.11	ENST00000355973.7:ENST00000472823.5:ENST00000377016.8:ENST00000377012.8:ENST00000377034.9:ENST00000491829.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.57051	2.75657	2.94263	0.0265466	0.00766873	0.120071	0.0503696
chr17	81564074	81564170	16708247	0	-	0.479167	(0.455,0.49]	chr17	1377441	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	2.18674	2.7565549999999996	3.32637	0.0034804	1.64563e-4	0.0295021	0.00269001
chr2	171517358	171517447	3014282	0	-	0.595506	(0.59,1]	chr2	267007	2	EXON_PSEUDO	EXON_PSEUDO	RPS15P4	ENSG00000233762.3	ENST00000433675.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	76	2	2.11642	2.75646	3.3965	0.0144884	1.83913e-4	0.0790431	0.00296795
chr6	119348545	119348629	7921024	0	-	0.619048	(0.59,1]	chr6	606539	2	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	10	177	2	1.96195	2.756325	3.5507	0.0144738	8.94807e-7	0.0790046	3.64018e-5
chr1	39485694	39485794	150063	0	+	0.53	(0.49,0.53]	chr1	18711	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MACF1	ENSG00000127603.31	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.5:ENST00000671089.1:ENST00000372925.6:ENST00000289893.8:ENST00000683517.1:ENST00000360115.8:ENST00000446276.5:ENST00000442046.5:ENST00000496360.5:ENST00000497807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	2.64528	2.75619	2.8671	0.0202736	0.0100489	0.0984041	0.0623334
chr11	71435135	71435190	12444397	0	-	0.509091	(0.49,0.53]	chr11	966969	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1:ENST00000533800.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.64528	2.75619	2.8671	0.0202736	0.0100489	0.0984041	0.0623334
chr9	128993524	128993609	10482704	0	+	0.529412	(0.49,0.53]	chr9	791113	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000467044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	19	2	2.64528	2.75619	2.8671	0.0202736	0.0100489	0.0984041	0.0623334
chr4	17800751	17800849	5337567	0	-	0.367347	(0.36,0.39]	chr4	429240	2	UTR3	UTR3:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.48922	2.756185	3.02315	0.0110399	8.65481e-4	0.0652374	0.0100741
chr7	157232723	157232823	8636393	0	+	0.37	(0.36,0.39]	chr7	659739	10	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.48922	2.756185	3.02315	0.0110399	8.65481e-4	0.0652374	0.0100741
chr11	4132353	4132421	11774413	0	+	0.411765	(0.39,0.42]	chr11	901036	2	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	35	2	1.57493	2.75615	3.93737	0.0284977	7.80292e-5	0.125493	0.00162998
chr1	33009632	33009732	924417	0	-	0.53	(0.49,0.53]	chr1	97512	18	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.72252	2.7560700000000002	2.78962	0.0161474	0.0129044	0.0860154	0.0725185
chr16	58723745	58723823	15967794	0	-	0.5	(0.49,0.53]	chr16	1281448	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5:ENST00000496461.5:ENST00000568368.1:ENST00000492378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.72252	2.7560700000000002	2.78962	0.0161474	0.0129044	0.0860154	0.0725185
chr2	36843974	36844074	2594553	0	-	0.5	(0.49,0.53]	chr2	233508	64	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.72252	2.7560700000000002	2.78962	0.0161474	0.0129044	0.0860154	0.0725185
chr3	197044523	197044622	4667429	0	-	0.373737	(0.36,0.39]	chr3	386231	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.6711	2.755995	2.84089	0.0128123	0.00434596	0.0719798	0.0335517
chr7	157178689	157178768	8635834	0	+	0.367089	(0.36,0.39]	chr7	659664	1	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.6711	2.755995	2.84089	0.0128123	0.00434596	0.0719798	0.0335517
chr1	214640989	214641087	710430	0	+	0.397959	(0.39,0.42]	chr1	71905	12	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.18155	2.755675	3.3298	0.0283931	0.00165391	0.127654	0.0163614
chr8	35525567	35525665	9786517	0	-	0.418367	(0.39,0.42]	chr8	740155	5	EXON_PSEUDO	EXON_PSEUDO	LSM12P1	ENSG00000232024.2	ENST00000411836.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	22	2	2.18155	2.755675	3.3298	0.0283931	0.00165391	0.127654	0.0163614
chr6	34589670	34589769	7674097	0	-	0.393939	(0.39,0.42]	chr6	588118	25	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.5823	2.755625	2.92895	0.00246531	3.36969e-4	0.0230262	0.00475537
chr1	229323760	229323858	1541547	0	-	0.346939	(0.33,0.36]	chr1	154303	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	50	2	2.72261	2.75523	2.78785	0.00115378	9.0019e-5	0.0130851	0.0016684
chr5	151267650	151267749	6297987	0	+	0.494949	(0.49,0.53]	chr5	491682	3	UTR3	UTR3:EXON_MRNA	GM2A	ENSG00000196743.9	ENST00000357164.4	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.72252	2.75523	2.78794	0.0161474	0.00251838	0.0860154	0.0226599
chr3	184171247	184171346	3948116	0	+	0.555556	(0.53,0.59]	chr3	331990	6	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	5	39	2	2.20093	2.75518	3.30943	0.00507963	0.0018255	0.037544	0.0183913
chr12	111943303	111943369	13541980	0	-	0.378788	(0.36,0.39]	chr12	1065515	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.32678	2.75513	3.18348	0.0193538	0.00310315	0.0943643	0.0263402
chr6	129577817	129577916	7955638	0	-	0.363636	(0.36,0.39]	chr6	608194	18	UTR3	UTR3:EXON_MRNA	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.32678	2.75513	3.18348	0.0193538	0.00310315	0.0943643	0.0263402
chr7	73441697	73441797	8853476	0	-	0.41	(0.39,0.42]	chr7	675865	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	2.59477	2.754925	2.91508	4.41174e-4	1.97342e-4	0.0062930699999999996	0.00313008
chr2	96864237	96864309	2792270	0	-	0.625	(0.59,1]	chr2	249237	1	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	39	2	1.5222	2.754855	3.98751	0.0422214	0.0301044	0.159345	0.129773
chr3	14481755	14481841	3320798	0	+	0.627907	(0.59,1]	chr3	292279	2	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	138	2	2.54357	2.75472	2.96587	0.00276959	4.63916e-5	0.0240579	0.00106753
chr1	33013280	33013341	924456	0	-	0.52459	(0.49,0.53]	chr1	97518	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000491241.1:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	55	2	2.10817	2.754715	3.40126	0.00798134	1.73901e-5	0.0527008	4.37068e-4
chr6	16266317	16266417	7067555	0	+	0.51	(0.49,0.53]	chr6	540898	78	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	126	2	2.13818	2.7543699999999998	3.37056	0.00171273	7.78753e-8	0.0167744	5.01111e-6
chr3	186787126	186787195	3958255	0	+	0.405797	(0.39,0.42]	chr3	333864	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	EIF4A2:MIR1248	ENSG00000156976.17:ENSG00000283958.1	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000468362.5:ENST00000492144.5:ENST00000465792.1:ENST00000629190.1:ENST00000475409.1:ENST00000497177.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	12	75	2	2.71916	2.7542400000000002	2.78932	2.11218e-4	2.97356e-5	0.00357316	6.72989e-4
chr1	45693719	45693805	175257	0	+	0.418605	(0.39,0.42]	chr1	22794	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM69	ENSG00000159596.7	ENST00000372025.5:ENST00000496366.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	53	2	2.67296	2.754125	2.83529	0.00159022	8.32357e-5	0.0168452	0.00157156
chr1	11786803	11786901	861668	0	-	0.408163	(0.39,0.42]	chr1	87355	12	UTR3	UTR3:EXON_MRNA	MTHFR	ENSG00000177000.13	ENST00000376590.9:ENST00000376592.6:ENST00000376583.7:ENST00000376585.6	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.01677	2.75411	3.49145	0.0350273	0.0235818	0.141505	0.111323
chr11	10508151	10508226	12270797	0	-	0.533333	(0.53,0.59]	chr11	948734	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	36	295	2	1.77988	2.754025	3.72817	0.00105397	6.65943e-10	0.0123035	7.28393e-8
chr10	118932473	118932573	11716188	0	-	0.36	(0.33,0.36]	chr10	893737	600	INTRON	INTRON	RP11-498J9.2	ENSG00000229272.2	ENST00000663084.1	lncRNA	lncRNA	lncRNA	lncRNA	6	39	2	2.47163	2.753905	3.03618	0.0129725	5.82072e-5	0.0724783	0.00116992
chr3	96618043	96618139	4316748	0	-	0.375	(0.36,0.39]	chr3	360010	9	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	68	384	2	2.25909	2.75374	3.24839	1.12492e-5	1.26901e-9	3.34232e-4	1.29796e-7
chr6	38676511	38676609	7689635	0	-	0.306122	(0.29,0.33]	chr6	589572	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	133	2	2.59465	2.753625	2.9126	4.60376e-6	3.41303e-6	1.59841e-4	1.12474e-4
chr1	77949061	77949154	1112673	0	-	0.322581	(0.29,0.33]	chr1	111857	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000294623.8:ENST00000370767.5:ENST00000487684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	54	2	2.50855	2.753295	2.99804	0.0023535	1.3028e-5	0.0222204	3.42469e-4
chr17	55776786	55776884	16274529	0	+	0.418367	(0.39,0.42]	chr17	1320159	8	UTR3	UTR3:EXON_MRNA:INTRON	PCTP	ENSG00000141179.14	ENST00000268896.10:ENST00000576183.5:ENST00000573500.5:ENST00000417982.6:ENST00000325214.10:ENST00000571489.5:ENST00000576221.1:ENST00000572536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	39	2	2.74829	2.753275	2.75826	0.00103132	8.96426e-4	0.0121443	0.0102618
chr4	39824415	39824512	5384643	0	-	0.309278	(0.29,0.33]	chr4	431623	17	UTR3	UTR3:EXON_MRNA	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.24226	2.75324	3.26422	0.0306054	2.56761e-4	0.130226	0.00385453
chr2	227554495	227554593	2415383	0	+	0.367347	(0.36,0.39]	chr2	217297	1	UTR3	UTR3:EXON_MRNA	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000458212.1	protein_coding	protein_coding	protein_coding	protein_coding	11	68	2	2.43116	2.7531600000000003	3.07516	0.00129293	6.89731e-6	0.0141517	0.00020353099999999999
chr19	12875696	12875793	17471735	0	-	0.494845	(0.49,0.53]	chr19	1463247	6	UTR3	UTR3:EXON_MRNA	DNASE2	ENSG00000105612.9	ENST00000222219.8	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.56437	2.75307	3.94177	0.0379797	0.0104929	0.14882600000000001	0.063428
chr4	39454128	39454225	5383219	0	-	0.360825	(0.36,0.39]	chr4	431450	17	UTR3	UTR3:EXON_MRNA	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000511643.6:ENST00000506581.6:ENST00000644328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	36	2	1.85874	2.753025	3.64731	0.0415243	2.27851e-5	0.164804	5.41358e-4
chr3	196069454	196069511	4663355	0	-	0.421053	(0.42,0.455]	chr3	385619	1	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	209	2	2.36024	2.7528	3.14536	4.88987e-5	5.1163e-8	0.00111284	3.15034e-6
chr1	77955254	77955329	1112736	0	-	0.48	(0.455,0.49]	chr1	111864	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000294623.8:ENST00000370767.5:ENST00000487684.1:ENST00000470287.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	28	2	2.53523	2.75224	2.96925	0.00698725	0.00270505	0.0473262	0.0243939
chr10	22535341	22535439	11411103	0	-	0.459184	(0.455,0.49]	chr10	869854	6	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.53523	2.75224	2.96925	0.00698725	0.00270505	0.0473262	0.0243939
chr19	54207575	54207647	17390463	0	+	0.513889	(0.49,0.53]	chr19	1447220	1	UTR3	UTR3:EXON_MRNA:INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5:ENST00000302907.9:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	2.02795	2.7520800000000003	3.47621	0.0110299	1.03289e-5	0.0652374	2.84417e-4
chr1	45511079	45511162	978295	0	-	0.457831	(0.455,0.49]	chr1	103084	3	UTR3	UTR3:EXON_MRNA	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.80094	2.75208	3.70322	0.0265942	1.91639e-6	0.120205	6.93031e-5
chr10	79314552	79314651	11148594	0	+	0.282828	[0,0.29]	chr10	847412	4	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.67953	2.75198	2.82443	0.0180803	0.0046416	0.0920398	0.0354333
chr15	65877429	65877527	14982218	0	+	0.44898	(0.42,0.455]	chr15	1177725	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB11A	ENSG00000103769.10	ENST00000569304.1:ENST00000568850.5:ENST00000564910.5:ENST00000566233.5:ENST00000261890.7:ENST00000565075.5:ENST00000569896.1:ENST00000567671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	48	2	2.26652	2.751795	3.23707	0.00146622	2.71467e-4	0.0157384	0.00404536
chr19	49490231	49490301	17370743	0	+	0.471429	(0.455,0.49]	chr19	1443117	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	58	375	2	2.64717	2.751765	2.85636	1.20259e-6	6.4487e-8	5.14731e-5	3.83931e-6
chr7	12687641	12687728	8136640	0	+	0.54023	(0.53,0.59]	chr7	621808	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ARL4A	ENSG00000122644.13	ENST00000396662.5:ENST00000356797.7:ENST00000396664.2:ENST00000439721.1:ENST00000396663.2:ENST00000651779.1:ENST00000404894.1	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.0289	2.751545	3.47419	0.0373899	8.75273e-4	0.146698	0.0106963
chr21	37472760	37472860	18116990	0	+	0.48	(0.455,0.49]	chr21	1536249	1	CDS_START	CDS_START:CDS:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000462274.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	1.92777	2.75151	3.57525	0.0286531	5.24878e-4	0.128685	0.00677371
chr20	49636013	49636112	18003185	0	-	0.545455	(0.53,0.59]	chr20	1525863	32	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	2.71318	2.75149	2.7898	0.0128364	0.00340745	0.0719798	0.0283456
chr22	21788750	21788808	18442645	0	-	0.448276	(0.42,0.455]	chr22	1572531	2	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.61085	2.751385	2.89192	0.00157686	7.93561e-4	0.015761	0.00988333
chr3	152299897	152299995	3816857	0	+	0.367347	(0.36,0.39]	chr3	325627	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	51	2	2.51153	2.751195	2.99086	3.37219e-4	3.25198e-4	0.00500369	0.00475813
chr16	70561706	70561784	15730063	0	+	0.564103	(0.53,0.59]	chr16	1252981	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	2.56002	2.7511650000000003	2.94231	0.00634904	3.05722e-4	0.0446708	0.00442973
chr10	28611773	28611847	10990546	0	+	0.445946	(0.42,0.455]	chr10	835893	1	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.3277	2.7511400000000004	3.17458	0.00333145	2.16935e-5	0.0286606	5.17607e-4
chrX	41223309	41223402	18669157	0	+	0.408602	(0.39,0.42]	chrX	1592122	2	CDS	CDS:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.61392	2.75114	2.88836	0.0102432	0.0017565	0.062872	0.0171455
chr5	150445608	150445685	6914280	0	-	0.675325	(0.59,1]	chr5	529159	1	CDS	CDS:EXON_MRNA	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1:ENST00000519855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	340	2	2.27243	2.7511099999999997	3.22979	1.55121e-4	3.55491e-6	0.00258348	1.28132e-4
chr1	201988973	201989044	661938	0	+	0.464789	(0.455,0.49]	chr1	66423	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5:ENST00000620670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.30139	2.7510399999999997	3.20069	0.0530131	0.00285821	0.195536	0.0245841
chr10	74708320	74708382	11123277	0	+	0.483871	(0.455,0.49]	chr10	846431	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.30139	2.7510399999999997	3.20069	0.0530131	0.00285821	0.195536	0.0245841
chr2	27038701	27038758	1690651	0	+	0.473684	(0.455,0.49]	chr2	165351	1	CDS	CDS:UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000425720.5:ENST00000444135.5:ENST00000434544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.30139	2.7510399999999997	3.20069	0.0530131	0.00285821	0.195536	0.0245841
chr6	18224446	18224543	7622461	0	-	0.268041	[0,0.29]	chr6	580929	7	UTR3	UTR3:EXON_MRNA	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	2.70065	2.750995	2.80134	0.0049344	5.07704e-4	0.0379087	0.00660682
chrM	4469	4563	19377184	0	+	0.489362	(0.455,0.49]	chrM	1649802	1	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	103	638	2	2.5912	2.750795	2.91039	3.88658e-7	1.01386e-8	1.77807e-5	8.633e-7
chr19	38624076	38624127	17322772	0	+	0.568627	(0.53,0.59]	chr19	1434223	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000586932.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000588422.3:ENST00000592558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	62	2	2.15051	2.75077	3.35103	0.00631495	2.54119e-5	0.0446309	5.894e-4
chr1	154225123	154225213	479668	0	+	0.555556	(0.53,0.59]	chr1	49599	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.0271	2.750645	3.47419	0.00643061	8.75273e-4	0.0450905	0.0106963
chr19	38838954	38839015	17561093	0	-	0.57377	(0.53,0.59]	chr19	1475074	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5:ENST00000601664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	107	2	2.63175	2.750605	2.86946	1.56735e-4	1.79885e-5	0.00283272	4.46935e-4
chr11	61810852	61810879	12406024	0	-	0.740741	(0.59,1]	chr11	960616	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000433932.5:ENST00000542506.5:ENST00000496123.6:ENST00000539999.1:ENST00000424501.5:ENST00000540767.5:ENST00000545245.5:ENST00000545405.5:ENST00000421879.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	48	2	2.69477	2.7505699999999997	2.80637	0.020208	0.00274489	0.0978331	0.0238522
chr1	37587402	37587495	947451	0	-	0.376344	(0.36,0.39]	chr1	99574	2	CDS	CDS:EXON_MRNA	GNL2	ENSG00000134697.13	ENST00000373062.8	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.38564	2.750135	3.11463	0.0476159	1.14911e-4	0.17993	0.00203731
chr5	55345093	55345144	5973358	0	+	0.372549	(0.36,0.39]	chr5	468307	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000504997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	32	2	2.38564	2.750135	3.11463	0.0476159	1.14911e-4	0.17993	0.00203731
chr19	14091785	14091884	17478344	0	-	0.646465	(0.59,1]	chr19	1464173	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKACA	ENSG00000072062.15	ENST00000308677.9:ENST00000677951.1:ENST00000677971.1:ENST00000350356.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	46	2	2.44587	2.750035	3.0542	0.0105307	0.00663549	0.0644466	0.0456243
chr15	93027796	93027896	15115448	0	+	0.27	[0,0.29]	chr15	1189608	32	UTR3	UTR3:EXON_MRNA	CHD2	ENSG00000173575.22	ENST00000394196.9:ENST00000625662.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.42645	2.749975	3.0735	0.0123114	0.00785095	0.070688	0.0520241
chr16	70270195	70270267	15997071	0	-	0.416667	(0.39,0.42]	chr16	1284666	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	57	2	2.35464	2.749955	3.14527	5.33048e-4	3.42068e-4	0.00742114	0.00482266
chr7	103304410	103304490	8441044	0	+	0.4125	(0.39,0.42]	chr7	645015	1	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	2.44959	2.7499450000000003	3.0503	0.00570576	0.00167534	0.0424438	0.0164993
chr16	23571889	23571989	15594617	0	+	0.44	(0.42,0.455]	chr16	1236627	14	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	2.12023	2.749925	3.37962	0.00189178	1.2947e-4	0.0181965	0.00242147
chr2	75658745	75658844	1894596	0	+	0.323232	(0.29,0.33]	chr2	179770	36	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.36742	2.74977	3.13212	0.0147368	0.00551048	0.0801529	0.0414592
chr8	38121003	38121076	9291590	0	+	0.575342	(0.53,0.59]	chr8	710613	2	CDS	CDS:UTR3:EXON_MRNA	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000518186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	2.47886	2.7497	3.02054	0.00577011	0.00138105	0.0426551	0.014307
chr14	20476893	20476991	14171381	0	+	0.5	(0.49,0.53]	chr14	1109155	4	UTR3	UTR3:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000361505.10:ENST00000554056.5:ENST00000556754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	48	2	2.3044	2.749615	3.19483	0.00696379	6.77168e-5	0.0474632	0.0013157
chr6	33417568	33417668	7669562	0	-	0.68	(0.59,1]	chr6	587678	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	128	2	2.53047	2.749605	2.96874	7.54387e-4	1.68359e-4	0.0090193	0.00297945
chr3	39097560	39097657	4126335	0	-	0.453608	(0.42,0.455]	chr3	345289	11	UTR3	UTR3:EXON_MRNA	GORASP1	ENSG00000114745.14	ENST00000319283.8:ENST00000441302.6:ENST00000452389.6:ENST00000453680.5:ENST00000422110.6:ENST00000431601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.03532	2.7494050000000003	3.46349	0.040947	9.0025e-4	0.163285	0.0102618
chr10	84152263	84152348	11164621	0	+	0.376471	(0.36,0.39]	chr10	848161	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	13	77	2	1.65457	2.74939	3.84421	0.0133727	1.06852e-7	0.0745745	5.91068e-6
chr10	27110601	27110700	11423275	0	-	0.373737	(0.36,0.39]	chr10	870884	6	UTR3	UTR3:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.32678	2.7491149999999998	3.17145	0.0193538	3.99865e-4	0.0943643	0.0054764
chr11	652684	652781	12226962	0	-	0.371134	(0.36,0.39]	chr11	943625	9	INTRON	INTRON	DEAF1	ENSG00000177030.18	ENST00000382409.4:ENST00000527170.5:ENST00000683307.1:ENST00000528864.6:ENST00000525626.6:ENST00000682936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.32678	2.7491149999999998	3.17145	0.0193538	3.99865e-4	0.0943643	0.0054764
chr14	102042634	102042691	14495825	0	+	0.649123	(0.59,1]	chr14	1133248	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644888.1:ENST00000644239.2:ENST00000643591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	56	2	2.38157	2.74902	3.11647	0.00535979	0.00534794	0.0406564	0.0392783
chr3	150546324	150546419	4517243	0	-	0.747368	(0.59,1]	chr3	374955	3	UTR5	UTR5:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1:ENST00000491660.1	protein_coding	protein_coding	protein_coding	protein_coding	9	122	2	2.29069	2.7490050000000004	3.20732	0.00164656	1.12583e-4	0.0171652	0.00199971
chr1	36286457	36286547	141537	0	+	0.477778	(0.455,0.49]	chr1	17556	2	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.35972	2.748795	3.13787	0.0058634	4.66183e-4	0.0427941	0.00616585
chr21	37201862	37201958	18115582	0	+	0.427083	(0.42,0.455]	chr21	1536145	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	67	2	2.29236	2.74877	3.20518	4.96621e-4	6.88593e-5	0.00648267	0.00146004
chr15	71341249	71341342	15364358	0	-	0.516129	(0.49,0.53]	chr15	1213733	2	EXON_PSEUDO	EXON_PSEUDO	RP11-592N21.1	ENSG00000212664.5	ENST00000498103.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	49	2	2.49797	2.74866	2.99935	0.00843736	7.02135e-5	0.0546021	0.00135421
chr10	32910299	32910377	11443982	0	-	0.5	(0.49,0.53]	chr10	872630	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	2.13501	2.74864	3.36227	0.0287874	2.26725e-5	0.128869	5.39086e-4
chr8	140527347	140527447	10132116	0	-	0.41	(0.39,0.42]	chr8	760954	73	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.50974	2.74863	2.98752	0.00123319	2.91053e-4	0.0131207	0.00462551
chr1	113968510	113968579	418155	0	+	0.478261	(0.455,0.49]	chr1	41178	2	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	8	56	2	2.69169	2.74843	2.80517	0.00126948	1.00884e-4	0.0139061	0.00181604
chr1	17416562	17416646	874102	0	-	0.571429	(0.53,0.59]	chr1	89630	2	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	2.20093	2.748405	3.29588	0.00507963	1.96478e-4	0.037544	0.00335505
chr20	32808193	32808290	17755553	0	+	0.443299	(0.42,0.455]	chr20	1498916	4	UTR3	UTR3:EXON_MRNA	DNMT3B	ENSG00000088305.18	ENST00000328111.6:ENST00000348286.6:ENST00000353855.6:ENST00000443239.7:ENST00000201963.3	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.3873	2.7480200000000004	3.10874	0.00131117	5.40397e-4	0.0143177	0.00688813
chr15	89197304	89197403	15093461	0	+	0.434343	(0.42,0.455]	chr15	1187100	20	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	7	52	2	1.78888	2.747905	3.70693	0.0259111	1.87156e-6	0.117079	7.50901e-5
chr11	314083	314170	11756464	0	+	0.551724	(0.53,0.59]	chr11	897763	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-326C3.17:IFITM1	ENSG00000288681.1:ENSG00000185885.17	ENST00000399815.2:ENST00000680588.1:ENST00000680299.1:ENST00000679353.1:ENST00000679982.1:ENST00000681350.1:ENST00000680855.1:ENST00000680310.1:ENST00000681702.1:ENST00000681111.1:ENST00000680342.1:ENST00000680870.1:ENST00000681293.1:ENST00000680802.1:ENST00000528780.5:ENST00000328221.5:ENST00000681761.1:ENST00000681821.1:ENST00000408968.4:ENST00000679765.1:ENST00000681180.1:ENST00000681426.1:ENST00000681577.1:ENST00000680696.1:ENST00000681938.1:ENST00000679380.1:ENST00000680938.1:ENST00000680699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	45	365	2	2.24275	2.7478249999999997	3.2529	4.18092e-5	1.02721e-8	9.81877e-4	7.93214e-7
chr16	11877493	11877580	15856925	0	-	0.436782	(0.42,0.455]	chr16	1266856	2	CDS	CDS:EXON_MRNA	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.57051	2.74782	2.92513	0.0265466	3.39829e-4	0.120071	0.00479167
chr1	47216583	47216681	985515	0	-	0.479592	(0.455,0.49]	chr1	104046	4	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	17	103	2	2.35877	2.747795	3.13682	9.60537e-5	1.03123e-5	0.00175049	3.09366e-4
chrX	120437084	120437182	19196130	0	-	0.408163	(0.39,0.42]	chrX	1631971	7	UTR3	UTR3:EXON_MRNA:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	48	2	2.13033	2.7477799999999997	3.36523	0.00865856	2.21919e-5	0.0557159	5.28886e-4
chr6	38676413	38676511	7689634	0	-	0.469388	(0.455,0.49]	chr6	589572	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	209	2	2.44187	2.747635	3.0534	2.11666e-5	1.16589e-7	5.62198e-4	6.37652e-6
chr2	27041503	27041598	1690686	0	+	0.557895	(0.53,0.59]	chr2	165370	8	UTR3	UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000460665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	2.37399	2.74754	3.12109	0.0126178	3.24817e-5	0.0717599	7.18962e-4
chr2	74154694	74154793	2740217	0	-	0.393939	(0.39,0.42]	chr2	243880	23	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.5371	2.7474800000000004	2.95786	0.00138212	5.20981e-4	0.0149186	0.00674037
chr17	61962824	61962897	16628409	0	-	0.328767	(0.29,0.33]	chr17	1366859	2	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.54643	2.7474350000000003	2.94844	0.0026976	0.00217122	0.0236059	0.0208941
chr7	152176477	152176573	9135324	0	-	0.458333	(0.455,0.49]	chr7	698399	4	CDS	CDS:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	2.40508	2.747345	3.08961	0.00445157	0.0022198	0.0340751	0.0211918
chr19	38721537	38721612	17323668	0	+	0.573333	(0.53,0.59]	chr19	1434335	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	65	2	2.30988	2.7471750000000004	3.18447	0.00643853	2.12116e-5	0.0452349	5.07604e-4
chr22	20585183	20585267	18299183	0	+	0.571429	(0.53,0.59]	chr22	1553506	2	CDS	CDS:UTR3:EXON_MRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1:ENST00000461076.1:ENST00000436496.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	2.30988	2.7471750000000004	3.18447	0.00643853	2.12116e-5	0.0452349	5.07604e-4
chr19	49496456	49496471	17370784	0	+	0.533333	(0.53,0.59]	chr19	1443143	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000596873.1:ENST00000270625.7:ENST00000594493.1:ENST00000601216.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	216	2	2.60295	2.747135	2.89132	1.10407e-4	3.967e-7	0.00211938	1.81415e-5
chr13	31151109	31151191	13951440	0	-	0.353659	(0.33,0.36]	chr13	1095033	3	CDS	CDS:UTR3:EXON_MRNA	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.51797	2.747015	2.97606	0.0303594	0.00871774	0.130016	0.0558165
chr2	32487723	32487801	1713739	0	+	0.333333	(0.33,0.36]	chr2	168193	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.51797	2.747015	2.97606	0.0303594	0.00871774	0.130016	0.0558165
chr4	26431399	26431497	4766684	0	+	0.336735	(0.33,0.36]	chr4	394281	5	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.51797	2.747015	2.97606	0.0303594	0.00871774	0.130016	0.0558165
chr7	67239024	67239123	8310206	0	+	0.353535	(0.33,0.36]	chr7	633500	6	UTR3	UTR3:EXON_MRNA	TYW1	ENSG00000198874.13	ENST00000615572.4:ENST00000359626.10:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.51797	2.747015	2.97606	0.0303594	0.00871774	0.130016	0.0558165
chrX	123686547	123686630	19199039	0	-	0.349398	(0.33,0.36]	chrX	1632624	1	CDS	CDS:UTR3:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.51797	2.747015	2.97606	0.0303594	0.00871774	0.130016	0.0558165
chr16	173471	173500	15480736	0	+	0.62069	(0.59,1]	chr16	1224198	1	CDS	CDS:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	87	1164	2	2.2055	2.74681	3.28812	6.73651e-5	7.3871e-8	0.00131137	4.77306e-6
chr3	128620510	128620593	4441307	0	-	0.626506	(0.59,1]	chr3	368985	1	CDS	CDS:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	1.96265	2.7467699999999997	3.53089	0.0238491	1.7784e-5	0.112466	4.43546e-4
chr6	109368762	109368850	7886668	0	-	0.363636	(0.36,0.39]	chr6	603690	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	77	2	2.6387	2.74668	2.85466	3.96422e-4	1.05746e-5	0.00587914	2.89379e-4
chr5	90679448	90679548	6089921	0	+	0.4	(0.39,0.42]	chr5	477124	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ADGRV1	ENSG00000164199.18	ENST00000405460.9:ENST00000640403.1:ENST00000639473.1:ENST00000639431.1:ENST00000640779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.2627100000000002	2.74664	3.23057	0.0192666	3.34829e-4	0.0966228	0.00509483
chr13	52475141	52475240	13747247	0	+	0.383838	(0.36,0.39]	chr13	1082861	1	UTR3	UTR3:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378037.9:ENST00000258607.10:ENST00000490903.5:ENST00000459902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	2.63521	2.746525	2.85784	0.00633242	0.00191736	0.0446708	0.0183299
chr2	144398812	144398908	2929340	0	-	0.364583	(0.36,0.39]	chr2	259644	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	43	2	2.63702	2.74643	2.85584	0.00212882	1.78887e-4	0.0206577	0.0028962
chr1	93152205	93152303	1171186	0	-	0.316327	(0.29,0.33]	chr1	115372	26	UTR3	UTR3:EXON_MRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	58	2	2.60266	2.7461450000000003	2.88963	3.76837e-4	2.91371e-5	0.00563632	6.62759e-4
chr15	64162886	64162986	15339347	0	-	0.67	(0.59,1]	chr15	1210889	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPIB	ENSG00000166794.6	ENST00000681658.1:ENST00000681397.1:ENST00000680158.1:ENST00000300026.4:ENST00000561048.2:ENST00000558492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	129	2	2.61897	2.746105	2.87324	9.74438e-4	1.2289e-4	0.0116117	0.00213485
chr5	179705758	179705781	6414205	0	+	0.347826	(0.33,0.36]	chr5	499135	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	30	2	2.17058	2.7460750000000003	3.32157	0.01664	1.77615e-4	0.0878065	0.00287736
chr1	15661038	15661135	69821	0	+	0.402062	(0.39,0.42]	chr1	7809	12	CDS	CDS:UTR3:EXON_MRNA	DDI2:RSC1A1	ENSG00000197312.12:ENSG00000215695.1	ENST00000480945.6:ENST00000320153.10:ENST00000345034.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.49701	2.74604	2.99507	0.0339607	0.00637824	0.141431	0.0449937
chr2	68047172	68047210	2715263	0	-	0.394737	(0.39,0.42]	chr2	241716	1	CDS	CDS:EXON_MRNA	C1D	ENSG00000197223.12	ENST00000410067.8:ENST00000355848.7:ENST00000407324.5:ENST00000409302.1:ENST00000485709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.49701	2.74604	2.99507	0.0339607	0.00637824	0.141431	0.0449937
chr7	135597997	135598067	8552809	0	+	0.414286	(0.39,0.42]	chr7	652757	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000462316.5:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.49701	2.74604	2.99507	0.0339607	0.00637824	0.141431	0.0449937
chr12	110720761	110720854	13539223	0	-	0.365591	(0.36,0.39]	chr12	1065103	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	58	2	1.74874	2.745945	3.74315	0.0142811	1.37919e-6	0.0780385	5.23299e-5
chr5	146132897	146132989	6891243	0	-	0.48913	(0.455,0.49]	chr5	527493	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	48	2	2.59329	2.745915	2.89854	7.86326e-4	4.22484e-4	0.00929193	0.00613535
chr19	55670455	55670543	17397316	0	+	0.693182	(0.59,1]	chr19	1448937	4	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding	11	159	2	2.55445	2.7458299999999998	2.93721	6.69187e-4	5.48451e-5	0.00820018	0.0012203
chr2	43222976	43223071	2618833	0	-	0.326316	(0.29,0.33]	chr2	235738	7	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.35931	2.7457149999999997	3.13212	0.00615202	0.00551048	0.0438642	0.0414592
chr1	114706955	114707055	1239475	0	-	0.25	[0,0.29]	chr1	121309	26	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.20534	2.745585	3.28583	0.0117033	0.00346525	0.0685676	0.0293796
chr5	34925495	34925578	5930626	0	+	0.216867	[0,0.29]	chr5	464765	1	UTR3	UTR3:EXON_MRNA	BRIX1	ENSG00000113460.13	ENST00000515798.5:ENST00000336767.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	19	2	2.20534	2.745585	3.28583	0.0117033	0.00346525	0.0685676	0.0293796
chr11	17330901	17330991	11827544	0	+	0.422222	(0.42,0.455]	chr11	905408	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUCB2	ENSG00000070081.17	ENST00000646648.1:ENST00000533773.5:ENST00000529010.6:ENST00000323688.10:ENST00000458064.6:ENST00000622082.4:ENST00000527580.5:ENST00000531242.1:ENST00000527735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.11785	2.74557	3.37329	0.0154862	0.00136107	0.0836691	0.0141115
chr11	43320820	43320914	11919775	0	+	0.425532	(0.42,0.455]	chr11	910814	1	CDS	CDS:EXON_MRNA:INTRON	API5	ENSG00000166181.13	ENST00000534695.5:ENST00000455725.6:ENST00000531273.6:ENST00000420461.6:ENST00000378852.7:ENST00000534600.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.11785	2.74557	3.37329	0.0154862	0.00136107	0.0836691	0.0141115
chr1	186356285	186356367	1412187	0	-	0.390244	(0.39,0.42]	chr1	142948	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000491783.5:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	34	2	2.74243	2.74536	2.74829	0.00369167	8.96426e-4	0.030936	0.0102618
chr14	67692578	67692593	14683505	0	-	0.4	(0.39,0.42]	chr14	1149652	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RDH11	ENSG00000072042.13	ENST00000381346.9:ENST00000553384.5:ENST00000553578.5:ENST00000428130.6:ENST00000554731.1:ENST00000553816.5:ENST00000557273.5:ENST00000557726.1:ENST00000557331.1:ENST00000556692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	1.99911	2.74528	3.49145	0.0477207	0.0350273	0.17993	0.141505
chr15	41298040	41298139	14885401	0	+	0.424242	(0.42,0.455]	chr15	1169280	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000558945.5:ENST00000500949.6:ENST00000668616.1:ENST00000560706.5:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	31	2	1.96397	2.74528	3.52659	0.0138503	6.87022e-4	0.0759947	0.00876781
chr16	56608583	56608655	15679093	0	+	0.666667	(0.59,1]	chr16	1246415	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MT2A	ENSG00000125148.7	ENST00000245185.6:ENST00000563985.1:ENST00000562017.1:ENST00000561491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	179	2	2.00328	2.745235	3.48719	9.51284e-4	1.28347e-4	0.010724	0.00241206
chr14	96556253	96556333	14476141	0	+	0.425	(0.42,0.455]	chr14	1130871	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13:ENST00000553689.5:ENST00000392990.6:ENST00000555626.5:ENST00000556459.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	57	2	2.60504	2.7450799999999997	2.88512	0.00201537	5.95335e-5	0.0197874	0.00119321
chr12	124786426	124786503	13600230	0	-	0.558442	(0.53,0.59]	chr12	1071681	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	68	2	2.54082	2.74505	2.94928	0.00100675	9.80612e-5	0.011962800000000001	0.00177549
chr14	67376438	67376514	14360485	0	+	0.434211	(0.42,0.455]	chr14	1122444	1	CDS	CDS:EXON_MRNA	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	1.78521	2.74504	3.70487	0.0195653	1.55091e-5	0.0951892	3.95473e-4
chr7	116506456	116506556	8475393	0	+	0.25	[0,0.29]	chr7	647296	4	UTR3	UTR3:EXON_MRNA	CAV2	ENSG00000105971.15	ENST00000222693.5:ENST00000343213.2	protein_coding	protein_coding	protein_coding	protein_coding	19	66	2	1.97552	2.745015	3.51451	0.00139257	1.81451e-6	0.0150189	6.60253e-5
chr1	202746141	202746232	1451906	0	-	0.406593	(0.39,0.42]	chr1	145831	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1:ENST00000649929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	23	2	2.70591	2.744955	2.784	0.0185716	0.00261393	0.0932453	0.0230705
chr19	11061816	11061909	17229671	0	+	0.580645	(0.53,0.59]	chr19	1419521	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000444061.8:ENST00000590574.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000647268.1:ENST00000643857.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000585799.5:ENST00000642508.1:ENST00000645236.1:ENST00000538456.4:ENST00000586985.2:ENST00000646889.1:ENST00000643929.1:ENST00000586921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	1.87133	2.744945	3.61856	0.0308819	0.0303021	0.130016	0.129773
chr19	12730719	12730799	17470522	0	-	0.525	(0.49,0.53]	chr19	1463053	2	UTR3	UTR3:EXON_MRNA	TRIR	ENSG00000123144.11	ENST00000242784.5:ENST00000592273.5:ENST00000591254.1:ENST00000588213.1:ENST00000589590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	38	2	2.54558	2.7448050000000004	2.94403	0.0024326	0.00122634	0.0228485	0.0130695
chr11	34096575	34096673	11905456	0	+	0.55102	(0.53,0.59]	chr11	909574	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1:ENST00000531668.1:ENST00000533562.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	66	2	2.5828700000000002	2.7445950000000003	2.90632	3.91334e-4	3.72925e-4	0.00559101	0.00538556
chr1	100069613	100069685	376632	0	+	0.375	(0.36,0.39]	chr1	36503	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000638779.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.63115	2.7444949999999997	2.85784	0.0245975	0.00191736	0.114841	0.0183299
chr20	18569305	18569405	17719923	0	+	0.39	(0.36,0.39]	chr20	1495766	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SMIM26:RP11-555E18.2	ENSG00000232388.5:ENSG00000284776.1	ENST00000435844.3:ENST00000411646.2:ENST00000618693.4	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.63115	2.7444949999999997	2.85784	0.0245975	0.00191736	0.114841	0.0183299
chr7	128770052	128770151	8521857	0	+	0.393939	(0.39,0.42]	chr7	650198	10	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	18	109	2	2.12923	2.74449	3.35975	6.41724e-4	3.15222e-7	0.0085023	1.4924e-5
chr2	26273650	26273750	1686253	0	+	0.42	(0.39,0.42]	chr2	164832	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	44	2	2.55985	2.7443999999999997	2.92895	0.00115425	3.36969e-4	0.0130851	0.00475537
chr15	74035683	74035767	15025395	0	+	0.547619	(0.53,0.59]	chr15	1180861	5	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PML	ENSG00000140464.20	ENST00000395135.7:ENST00000268058.8:ENST00000395132.6:ENST00000268059.10:ENST00000354026.10:ENST00000565898.5:ENST00000569965.5:ENST00000564428.5:ENST00000359928.8:ENST00000436891.7:ENST00000435786.6:ENST00000563500.5:ENST00000565239.5:ENST00000567606.5:ENST00000562086.1	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.48483	2.7443800000000005	4.00393	0.0472509	0.0108084	0.172726	0.064368
chr22	21450184	21450283	18302366	0	+	0.484848	(0.455,0.49]	chr22	1554129	36	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.04847	2.74404	3.43961	0.0192065	8.42878e-5	0.0943643	0.0015859
chr22	19057015	19057115	18430240	0	-	0.6	(0.59,1]	chr22	1570363	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1:ENST00000608548.1:ENST00000473832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	55	2	2.19905	2.74383	3.28861	0.0105866	0.0028753	0.0644466	0.0256141
chr6	31634235	31634300	7115885	0	+	0.569231	(0.53,0.59]	chr6	545879	1	CDS	CDS:EXON_MRNA:PRIMIRNA	PRRC2A:MIR6832	ENSG00000204469.13:ENSG00000274494.1	ENST00000376033.3:ENST00000376007.8:ENST00000616110.1:ENST00000460302.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	7	46	2	1.67949	2.743775	3.80806	0.0184962	1.65022e-4	0.0932453	0.00269147
chr5	115616108	115616208	6777007	0	-	0.32	(0.29,0.33]	chr5	519913	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4:ENST00000503010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	44	2	2.27411	2.743765	3.21342	0.00686811	1.77124e-5	0.0468903	4.41933e-4
chr22	38290882	38290978	18508095	0	-	0.291667	(0.29,0.33]	chr22	1579753	3	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	8	40	2	2.61288	2.743735	2.87459	0.00138819	1.72733e-4	0.0149724	0.00280648
chr1	46675535	46675632	983391	0	-	0.525773	(0.49,0.53]	chr1	103800	10	UTR3	UTR3:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000481623.2:ENST00000674495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	39	2	2.21413	2.7437050000000003	3.27328	0.00995539	2.21441e-4	0.0621728	0.00341572
chr22	19041882	19041959	18430083	0	-	0.584416	(0.53,0.59]	chr22	1570349	2	CDS	CDS:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8:ENST00000467659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	60	2	2.00715	2.74353	3.47991	0.00467412	6.7738e-5	0.0361967	0.0013157
chr12	92145690	92145768	13467136	0	-	0.551282	(0.53,0.59]	chr12	1059086	3	UTR5	UTR5:EXON_MRNA	BTG1	ENSG00000133639.6	ENST00000256015.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.37399	2.74337	3.11275	0.0126178	0.00407571	0.0717599	0.032143
chr9	92050013	92050067	10735818	0	-	0.333333	(0.33,0.36]	chr9	812101	2	CDS	CDS:UTR3:EXON_MRNA	SPTLC1	ENSG00000090054.15	ENST00000643599.1:ENST00000642671.1:ENST00000646481.1:ENST00000646534.1:ENST00000262554.7:ENST00000644140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	34	2	2.28792	2.7433199999999998	3.19872	0.0239159	6.97647e-5	0.112531	0.00134581
chr3	133588739	133588834	3750855	0	+	0.421053	(0.42,0.455]	chr3	321181	5	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.59462	2.74327	2.89192	0.0062772	0.00157686	0.0445415	0.015761
chr6	42883547	42883614	7153810	0	+	0.432836	(0.42,0.455]	chr6	552189	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000483998.6:ENST00000397415.7:ENST00000304734.9:ENST00000487619.1:ENST00000602561.1:ENST00000462348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	2.59462	2.74327	2.89192	0.0062772	0.00157686	0.0445415	0.015761
chr2	110658677	110658742	2838134	0	-	0.430769	(0.42,0.455]	chr2	253342	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	47	2	1.6876	2.743205	3.79881	0.0090249	1.65328e-4	0.0572373	0.0029267300000000002
chr1	89583041	89583138	345883	0	+	0.515464	(0.49,0.53]	chr1	34046	4	CDS	CDS:EXON_MRNA	LRRC8B	ENSG00000197147.15	ENST00000330947.7:ENST00000439853.6:ENST00000640258.1:ENST00000639264.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.13501	2.74317	3.35133	0.0287874	0.00150139	0.128869	0.0152367
chr18	12985252	12985346	16763998	0	+	0.510638	(0.49,0.53]	chr18	1382771	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000592582.5:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	25	2	2.13501	2.74317	3.35133	0.0287874	0.00150139	0.128869	0.0152367
chr7	100802763	100802862	8952752	0	-	0.494949	(0.49,0.53]	chr7	684381	3	UTR3	UTR3:EXON_MRNA	EPHB4	ENSG00000196411.10	ENST00000358173.8:ENST00000616502.4:ENST00000360620.7:ENST00000487222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.13501	2.74317	3.35133	0.0287874	0.00150139	0.128869	0.0152367
chr20	34285536	34285634	17946713	0	-	0.642857	(0.59,1]	chr20	1519959	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	AHCY:CTD-3216D2.5	ENSG00000101444.13:ENSG00000272945.1	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000609218.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	61	2	2.67996	2.743165	2.80637	0.00470478	0.00274489	0.0363963	0.0238522
chr17	47669677	47669773	16251838	0	+	0.458333	(0.455,0.49]	chr17	1316698	1	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000583013.1:ENST00000677341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	78	2	2.72608	2.7431099999999997	2.76014	1.66807e-4	3.75371e-5	0.00271868	9.03073e-4
chr1	150965464	150965562	1291359	0	-	0.520408	(0.49,0.53]	chr1	128670	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CERS2	ENSG00000143418.20	ENST00000482825.7:ENST00000561294.5:ENST00000271688.10:ENST00000345896.8:ENST00000560793.6:ENST00000368954.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	82	2	2.52073	2.74299	2.96525	1.16912e-4	8.82495e-5	0.00205256	0.00178337
chr16	30357475	30357568	15914337	0	-	0.548387	(0.53,0.59]	chr16	1275315	5	UTR3	UTR3:EXON_MRNA	TBC1D10B	ENSG00000169221.14	ENST00000409939.8:ENST00000475650.1:ENST00000478158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.36244	2.74292	3.1234	0.0131162	0.00390623	0.073569	0.0322851
chr1	150811058	150811154	1290607	0	-	0.40625	(0.39,0.42]	chr1	128516	15	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.59744	2.7429	2.88836	0.0102432	0.00572981	0.062872	0.0417368
chr16	11877406	11877493	15856924	0	-	0.402299	(0.39,0.42]	chr16	1266856	1	CDS	CDS:EXON_MRNA	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.59744	2.7429	2.88836	0.0102432	0.00572981	0.062872	0.0417368
chr16	2155286	2155358	15824766	0	-	0.527778	(0.49,0.53]	chr16	1262203	3	EXON_LNCRNA	EXON_LNCRNA	SNHG19	ENSG00000260260.1	ENST00000563192.1	lncRNA	lncRNA	lncRNA	lncRNA	4	32	2	2.69746	2.7427	2.78794	0.00380414	0.00251838	0.0317723	0.0226599
chr19	14401474	14401563	17242447	0	+	0.516854	(0.49,0.53]	chr19	1421826	2	CDS	CDS:EXON_MRNA	ADGRE5	ENSG00000123146.20	ENST00000358600.7:ENST00000357355.7:ENST00000242786.6:ENST00000586849.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.69746	2.7427	2.78794	0.00380414	0.00251838	0.0317723	0.0226599
chr22	35410743	35410826	18359489	0	+	0.518072	(0.49,0.53]	chr22	1561009	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000444778.1:ENST00000464908.5:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	32	2	2.69746	2.7427	2.78794	0.00380414	0.00251838	0.0317723	0.0226599
chr16	71921345	71921445	15733845	0	+	0.46	(0.455,0.49]	chr16	1253420	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1:ENST00000545518.1:ENST00000456820.2:ENST00000537571.1:ENST00000545388.2:ENST00000538709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	24	2	1.4646	2.7425	4.0204	0.0410791	0.00736097	0.15538	0.0490627
chr16	58532231	58532313	15966349	0	-	0.390244	(0.39,0.42]	chr16	1281097	1	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	2.01677	2.7423450000000003	3.46792	0.0235818	7.10972e-5	0.111323	0.00136974
chr16	87832772	87832870	16072456	0	-	0.632653	(0.59,1]	chr16	1291249	29	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5:ENST00000563489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	93	2	2.29455	2.742145	3.18974	0.00231247	5.51091e-4	0.0211481	0.00760492
chr5	134925442	134925542	6232572	0	+	0.45	(0.42,0.455]	chr5	485527	9	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	55	2	1.82443	2.742105	3.65978	0.00665171	2.09396e-5	0.0457102	5.04211e-4
chr11	126268002	126268086	12645201	0	-	0.488095	(0.455,0.49]	chr11	981867	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000528744.5:ENST00000530680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	23	2	2.23479	2.7419599999999997	3.24913	0.0209335	0.00239443	0.101282	0.0225356
chr22	17601091	17601181	18423854	0	-	0.466667	(0.455,0.49]	chr22	1569484	1	CDS	CDS:EXON_MRNA:INTRON	ATP6V1E1	ENSG00000131100.13	ENST00000253413.10:ENST00000399796.6:ENST00000399798.6:ENST00000413576.1:ENST00000481365.5:ENST00000484653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.35515	2.74179	3.12843	0.0140117	0.00392855	0.0767536	0.0322851
chr5	139627473	139627569	6250575	0	+	0.3125	(0.29,0.33]	chr5	487112	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D2	ENSG00000131508.16	ENST00000398733.8:ENST00000398734.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	36	2	2.45373	2.7416850000000004	3.02964	0.0156405	6.35336e-5	0.084273700000000007	0.00124813
chr11	46758982	46759043	12383639	0	-	0.459016	(0.455,0.49]	chr11	956030	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000527333.5:ENST00000526876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	57	2	2.46921	2.7416549999999997	3.0141	9.3076e-4	2.55246e-4	0.0111917	0.00383691
chr1	171579895	171579964	537502	0	+	0.536232	(0.53,0.59]	chr1	57712	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	7	55	2	2.18736	2.74162	3.29588	0.00311033	1.96478e-4	0.0263966	0.00335505
chr1	47376944	47377044	182634	0	+	0.34	(0.33,0.36]	chr1	23843	3	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	34	2	1.88124	2.74161	3.60198	0.00660193	6.01238e-4	0.0460328	0.00811676
chr12	98601627	98601726	13036981	0	+	0.333333	(0.33,0.36]	chr12	1015026	2	UTR3	UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1:ENST00000547869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	53	2	2.27433	2.7416	3.20887	0.00200332	1.76058e-5	0.0196867	4.39493e-4
chr1	40059346	40059446	151835	0	+	0.53	(0.49,0.53]	chr1	18984	1	CDS_START	CDS_START:CDS:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000449311.5:ENST00000421589.5:ENST00000414893.5:ENST00000372792.7:ENST00000372805.8:ENST00000414281.5:ENST00000420216.5:ENST00000372798.5:ENST00000340450.7:ENST00000435719.5:ENST00000427843.5:ENST00000424977.1:ENST00000417287.5:ENST00000446031.1	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.38204	2.7415700000000003	3.1011	0.0049129	5.69237e-4	0.0366648	0.00778538
chr12	12112036	12112136	12736776	0	+	0.34	(0.33,0.36]	chr12	990195	1	PRIMIRNA	PRIMIRNA:INTRON	BCL2L14:MIR1244-4	ENSG00000121380.12:ENSG00000283475.1	ENST00000298566.2:ENST00000636813.1	miRNA	nonsense_mediated_decay	miRNA:protein_coding	nonsense_mediated_decay:primary_miRNA	4	24	2	2.63456	2.741485	2.84841	0.00707461	0.0020676	0.0478528	0.0194849
chr5	181242331	181242345	7009007	0	-	0.357143	(0.33,0.36]	chr5	537340	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1:ENST00000503170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	2.70185	2.7413999999999996	2.78095	0.00388614	0.00121183	0.0322851	0.0129756
chr12	123586746	123586821	13127080	0	+	0.4	(0.39,0.42]	chr12	1025768	1	CDS	CDS:UTR5:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000544188.1:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	38	2	2.34349	2.74138	3.13927	0.0169272	9.67557e-5	0.0890655	0.00175376
chr11	90283602	90283697	12059335	0	+	0.505263	(0.49,0.53]	chr11	929980	12	EXON_PSEUDO	EXON_PSEUDO:INTRON	DISC1FP1:TUBAP2	ENSG00000261645.7:ENSG00000214391.3	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000530835.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr12	6598221	6598289	13187389	0	-	0.514706	(0.49,0.53]	chr12	1032384	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr12	120184111	120184177	13579617	0	-	0.5	(0.49,0.53]	chr12	1068779	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr17	28684655	28684725	16177043	0	+	0.528571	(0.49,0.53]	chr17	1305389	2	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr19	18575325	18575422	17258834	0	+	0.525773	(0.49,0.53]	chr19	1425553	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	UBA52	ENSG00000221983.8	ENST00000442744.7:ENST00000599595.5	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr2	111863674	111863747	2847113	0	-	0.506849	(0.49,0.53]	chr2	253931	1	CDS	CDS:EXON_MRNA	ANAPC1	ENSG00000153107.13	ENST00000341068.8	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr7	143863099	143863199	9116849	0	-	0.52	(0.49,0.53]	chr7	696356	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr9	33944364	33944455	10633667	0	-	0.505495	(0.49,0.53]	chr9	803861	1	CDS	CDS:UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000379225.2:ENST00000684298.1:ENST00000412543.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.56183	2.741325	2.92082	0.0261296	0.00827037	0.118976	0.0534766
chr7	158664675	158664750	9158848	0	-	0.493333	(0.49,0.53]	chr7	699572	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5:ENST00000491792.5:ENST00000472591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	37	2	1.87747	2.741115	3.60476	0.0123515	4.52633e-4	0.0708681	0.00642319
chr1	54218171	54218249	200489	0	+	0.448718	(0.42,0.455]	chr1	25611	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MRPL37	ENSG00000116221.15	ENST00000360840.9:ENST00000336230.10:ENST00000605337.5:ENST00000398219.2	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.07164	2.741025	3.41041	0.0101168	1.00299e-4	0.0626311	0.00180803
chr1	160299101	160299182	1328777	0	-	0.481481	(0.455,0.49]	chr1	136031	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000545284.1:ENST00000647899.1:ENST00000648632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	2.48533	2.741015	2.9967	0.00650423	3.84099e-4	0.0454205	0.00531017
chr17	47976711	47976766	16253175	0	+	0.581818	(0.53,0.59]	chr17	1317043	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-6N17.9:CDK5RAP3	ENSG00000263798.2:ENSG00000108465.15	ENST00000641877.1:ENST00000536708.6:ENST00000584991.5:ENST00000584063.5:ENST00000338399.9:ENST00000579175.5:ENST00000585163.5:ENST00000580287.5:ENST00000580391.5:ENST00000580670.6:ENST00000584168.5:ENST00000582114.5:ENST00000577802.1:ENST00000583697.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	19	2	1.65775	2.74091	3.82407	0.0573191	0.0179666	0.196623	0.0918323
chr17	50392449	50392502	16585222	0	-	0.54717	(0.53,0.59]	chr17	1363134	2	CDS	CDS:EXON_MRNA	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.65775	2.74091	3.82407	0.0573191	0.0179666	0.196623	0.0918323
chr19	10316497	10316593	17459294	0	-	0.552083	(0.53,0.59]	chr19	1460720	4	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	97	2	2.35955	2.74069	3.12183	4.95201e-4	1.21728e-5	0.00694421	3.23744e-4
chr18	77972965	77973065	17184255	0	-	0.28	[0,0.29]	chr18	1410246	1	SS3_PROX	SS3_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	4	20	2	2.67953	2.740435	2.80134	0.0049344	0.0046416	0.0379087	0.0354333
chr19	57293585	57293681	17405796	0	+	0.270833	[0,0.29]	chr19	1450092	15	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.67953	2.740435	2.80134	0.0049344	0.0046416	0.0379087	0.0354333
chr3	88052923	88053021	4311687	0	-	0.285714	[0,0.29]	chr3	359651	11	UTR3	UTR3:EXON_MRNA	CGGBP1	ENSG00000163320.12	ENST00000309534.10:ENST00000482016.6:ENST00000398392.2	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.67953	2.740435	2.80134	0.0049344	0.0046416	0.0379087	0.0354333
chr3	138656207	138656274	4477140	0	-	0.477612	(0.455,0.49]	chr3	372004	2	CDS	CDS:UTR3:EXON_MRNA	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000469284.6:ENST00000544716.5:ENST00000462898.5:ENST00000481749.5:ENST00000493568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.35214	2.740285	3.12843	0.0455621	0.00392855	0.168044	0.0322851
chr12	68659481	68659581	12939564	0	+	0.39	(0.36,0.39]	chr12	1008340	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000450214.6:ENST00000463493.5:ENST00000543393.5:ENST00000540209.5:ENST00000542145.5:ENST00000539091.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.45656	2.740265	3.02397	0.0100637	0.00674398	0.0624019	0.0461258
chr12	110492004	110492104	13537795	0	-	0.38	(0.36,0.39]	chr12	1064955	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	VPS29	ENSG00000111237.19	ENST00000549578.6:ENST00000360579.11:ENST00000621131.4:ENST00000552130.6:ENST00000447578.6:ENST00000546588.1:ENST00000548539.1:ENST00000549970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.45656	2.740265	3.02397	0.0100637	0.00674398	0.0624019	0.0461258
chr9	128541363	128541459	10479841	0	+	0.375	(0.36,0.39]	chr9	790305	3	UTR3	UTR3:EXON_MRNA	GLE1	ENSG00000119392.16	ENST00000683748.1:ENST00000684314.1:ENST00000683044.1:ENST00000683905.1:ENST00000684646.1:ENST00000684331.1:ENST00000309971.9:ENST00000684139.1:ENST00000683288.1:ENST00000684210.1:ENST00000684463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.45656	2.740265	3.02397	0.0100637	0.00674398	0.0624019	0.0461258
chr1	27408089	27408188	908784	0	-	0.515152	(0.49,0.53]	chr1	95011	40	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	16	114	2	2.63677	2.74026	2.84375	1.51203e-4	4.84674e-6	0.00275083	1.51504e-4
chr13	49701527	49701617	14020109	0	-	0.388889	(0.36,0.39]	chr13	1099637	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KPNA3	ENSG00000102753.10	ENST00000261667.8:ENST00000436760.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.38112	2.7401600000000004	3.0992	0.0031815	5.86576e-4	0.0279343	0.00742331
chr1	32031523	32031581	125738	0	+	0.413793	(0.39,0.42]	chr1	15430	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000492989.1:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	1.81545	2.74006	3.66467	0.0160991	3.60066e-4	0.0866586	0.00544157
chr11	118593643	118593698	12159657	0	+	0.4	(0.39,0.42]	chr11	937260	2	CDS	CDS:EXON_MRNA:INTRON	ARCN1	ENSG00000095139.14	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.81545	2.74006	3.66467	0.0160991	3.60066e-4	0.0866586	0.00544157
chr20	32703381	32703458	17943357	0	-	0.493506	(0.49,0.53]	chr20	1519430	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-503P21.4:COMMD7	ENSG00000285382.1:ENSG00000149600.12	ENST00000645058.1:ENST00000642484.1:ENST00000642630.1:ENST00000646357.1:ENST00000278980.11:ENST00000446419.6:ENST00000610160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.6129	2.74	2.8671	0.0100489	0.0052746	0.0623334	0.0389109
chr9	114425814	114425913	10809274	0	-	0.565657	(0.53,0.59]	chr9	819444	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WHRN	ENSG00000095397.16	ENST00000362057.4:ENST00000265134.10:ENST00000674048.1:ENST00000674036.8:ENST00000673811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.47	2.7399500000000003	3.0099	0.0089333	0.00600486	0.0567495	0.042887
chr1	155290571	155290671	1307536	0	-	0.59	(0.53,0.59]	chr1	132190	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	1.86855	2.73994	3.61133	0.0189167	4.55298e-4	0.0934721	0.00608573
chr1	27405020	27405119	908753	0	-	0.565657	(0.53,0.59]	chr1	95011	9	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.27113	2.739935	3.20874	0.0178853	0.00278422	0.0918323	0.0241009
chr17	44853295	44853390	16559929	0	-	0.568421	(0.53,0.59]	chr17	1359698	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.27113	2.739935	3.20874	0.0178853	0.00278422	0.0918323	0.0241009
chrX	53551092	53551189	19077359	0	-	0.56701	(0.53,0.59]	chrX	1622722	3	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.27113	2.739935	3.20874	0.0178853	0.00278422	0.0918323	0.0241009
chr9	94460274	94460370	10367799	0	+	0.364583	(0.36,0.39]	chr9	780591	10	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.10159	2.739915	3.37824	0.00841765	1.61189e-4	0.0543584	0.00287786
chr16	69700908	69701006	15725368	0	+	0.438776	(0.42,0.455]	chr16	1252140	47	UTR3	UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	44	2	1.97151	2.73988	3.50825	0.0084649	5.86898e-5	0.0546473	0.00129243
chr1	22092212	22092312	93086	0	+	0.45	(0.42,0.455]	chr1	10799	8	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	1.68865	2.73984	3.79103	0.0276098	8.61353e-6	0.124664	2.43348e-4
chr20	50192568	50192668	17814863	0	+	0.29	[0,0.29]	chr20	1507017	6	UTR3	UTR3:EXON_MRNA	CEBPB	ENSG00000172216.6	ENST00000303004.5	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.94841	2.7397650000000002	3.53112	0.0427374	5.30932e-5	0.168094	0.00108035
chr2	15606206	15606264	1650747	0	+	0.482759	(0.455,0.49]	chr2	162925	2	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.63872	2.739755	2.84079	0.00510378	0.00201021	0.0390492	0.0190112
chr16	85596919	85597019	15797291	0	+	0.41	(0.39,0.42]	chr16	1256995	13	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.38186	2.73961	3.09736	0.00601449	5.79886e-4	0.0434483	0.00734771
chr11	34112067	34112167	11905596	0	+	0.44	(0.42,0.455]	chr11	909617	1	CDS_START	CDS_START:CDS:EXON_MRNA	NAT10	ENSG00000135372.9	ENST00000531159.6:ENST00000257829.8:ENST00000529523.5:ENST00000527971.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.72686	2.73958	2.7523	0.0153283	0.00330337	0.0828908	0.027613
chr11	118374895	118374978	12157624	0	+	0.433735	(0.42,0.455]	chr11	936869	1	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.72686	2.73958	2.7523	0.0153283	0.00330337	0.0828908	0.027613
chr2	86146067	86146132	2772798	0	-	0.430769	(0.42,0.455]	chr2	246315	1	CDS	CDS:EXON_MRNA:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.72686	2.73958	2.7523	0.0153283	0.00330337	0.0828908	0.027613
chr2	171541653	171541723	2207263	0	+	0.428571	(0.42,0.455]	chr2	201983	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CYBRD1	ENSG00000071967.12	ENST00000409484.5:ENST00000468308.1:ENST00000321348.9:ENST00000375252.3:ENST00000474182.1:ENST00000445146.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.72686	2.73958	2.7523	0.0153283	0.00330337	0.0828908	0.027613
chr17	4797503	4797569	16093289	0	+	0.575758	(0.53,0.59]	chr17	1294584	2	CDS	CDS:EXON_MRNA	PSMB6	ENSG00000142507.10	ENST00000614486.4:ENST00000270586.8:ENST00000571309.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	28	2	2.45844	2.73949	3.02054	0.00930921	0.00577011	0.0587563	0.0426551
chr4	121817537	121817637	5626270	0	-	0.28	[0,0.29]	chr4	448530	12	UTR3	UTR3:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	16	75	2	2.69439	2.739415	2.78444	6.86754e-4	7.69251e-6	0.00876781	2.20887e-4
chr1	182388571	182388637	1401267	0	-	0.590909	(0.59,1]	chr1	141706	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	1.96265	2.7393650000000003	3.51608	0.0238491	0.00108676	0.112466	0.0118659
chr11	119095062	119095139	12626600	0	-	0.675325	(0.59,1]	chr11	979847	1	CDS	CDS:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	55	2	1.96265	2.7393650000000003	3.51608	0.0238491	0.00108676	0.112466	0.0118659
chr1	28769226	28769317	118676	0	+	0.274725	[0,0.29]	chr1	14549	4	UTR3	UTR3:EXON_MRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.31133	2.7393	3.16727	0.00696038	4.54416e-4	0.0474632	0.00608573
chr6	159680901	159681000	8048214	0	-	0.353535	(0.33,0.36]	chr6	615183	120	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	39	2	2.33322	2.73921	3.1452	0.00451613	9.8054e-5	0.0350603	0.00177549
chr12	68691967	68692039	12939769	0	+	0.472222	(0.455,0.49]	chr12	1008380	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535333.5:ENST00000537598.5:ENST00000535718.5:ENST00000539906.5:ENST00000538549.1:ENST00000545140.1:ENST00000539373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.50904	2.739145	2.96925	0.0310515	0.00698725	0.131262	0.0473262
chr19	1598036	1598133	17419420	0	-	0.463918	(0.455,0.49]	chr19	1452630	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AC005943.2:UQCR11	ENSG00000267059.2:ENSG00000127540.12	ENST00000585937.1:ENST00000591899.8:ENST00000593029.1:ENST00000589880.1:ENST00000593264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.50904	2.739145	2.96925	0.0310515	0.00698725	0.131262	0.0473262
chr20	34290390	34290449	17946763	0	-	0.457627	(0.455,0.49]	chr20	1519967	2	CDS	CDS:EXON_MRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.50904	2.739145	2.96925	0.0310515	0.00698725	0.131262	0.0473262
chr2	15277017	15277101	2527225	0	-	0.404762	(0.39,0.42]	chr2	227333	3	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.53821	2.739085	3.93996	0.0571218	0.00841622	0.196074	0.054565
chr4	102888027	102888127	5014935	0	+	0.43	(0.42,0.455]	chr4	408750	7	UTR3	UTR3:EXON_MRNA	CISD2	ENSG00000145354.12	ENST00000273986.10:ENST00000643561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	52	2	2.66618	2.739045	2.81191	6.31824e-4	2.64991e-4	0.0078507	0.004287
chr8	11831593	11831670	9201995	0	+	0.467532	(0.455,0.49]	chr8	703057	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1:ENST00000529521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	75	2	2.54243	2.739	2.93557	5.34358e-4	1.96038e-5	0.00743689	4.77912e-4
chr12	104350108	104350207	13059155	0	+	0.323232	(0.29,0.33]	chr12	1017716	18	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	1.83055	2.73882	3.64709	0.0348758	3.76873e-4	0.144642	0.00523508
chr2	74208578	74208649	1891674	0	+	0.408451	(0.39,0.42]	chr2	179179	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000477455.5:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	39	2	2.62301	2.7385849999999996	2.85416	0.00225069	6.74579e-4	0.021386	0.00826103
chr12	6594554	6594650	13187347	0	-	0.541667	(0.53,0.59]	chr12	1032364	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	35	2	2.56665	2.7382150000000003	2.90978	0.00857883	0.00209536	0.0552386	0.0196588
chr1	220001137	220001196	1511005	0	-	0.40678	(0.39,0.42]	chr1	151035	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.18155	2.73803	3.29451	0.0283931	1.98354e-4	0.127654	0.00314412
chr1	38019252	38019317	143027	0	+	0.476923	(0.455,0.49]	chr1	17928	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.40664	2.73789	3.06914	0.0123662	6.6649e-4	0.0705839	0.00820018
chr12	56113561	56113657	12898101	0	+	0.489583	(0.455,0.49]	chr12	1004172	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	15	95	2	2.45354	2.7378549999999997	3.02217	1.27254e-4	1.03697e-5	0.00241206	2.85495e-4
chr1	225985301	225985401	1531418	0	-	0.49	(0.455,0.49]	chr1	153220	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.27492	2.737805	3.20069	0.0193827	0.00285821	0.0943643	0.0245841
chr12	57750655	57750710	13357763	0	-	0.472727	(0.455,0.49]	chr12	1053021	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK4	ENSG00000135446.17	ENST00000312990.10:ENST00000257904.11:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5:ENST00000551888.5:ENST00000547281.5:ENST00000550419.5:ENST00000551800.5:ENST00000552254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.27492	2.737805	3.20069	0.0193827	0.00285821	0.0943643	0.0245841
chr2	84778030	84778126	2769140	0	-	0.479167	(0.455,0.49]	chr2	245559	9	EXON_PSEUDO	EXON_PSEUDO	LDHAP7	ENSG00000235847.2	ENST00000398295.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	23	2	2.27492	2.737805	3.20069	0.0193827	0.00285821	0.0943643	0.0245841
chr17	41763151	41763236	16543064	0	-	0.529412	(0.49,0.53]	chr17	1356285	3	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	8	62	2	2.25637	2.737635	3.2189	0.00420813	1.59529e-5	0.0329484	4.05661e-4
chr15	65887938	65888037	14982328	0	+	0.323232	(0.29,0.33]	chr15	1177744	2	UTR3	UTR3:EXON_MRNA	RAB11A	ENSG00000103769.10	ENST00000564910.5:ENST00000261890.7:ENST00000569896.1	protein_coding	protein_coding	protein_coding	protein_coding	14	65	2	2.50613	2.737045	2.96796	1.79094e-4	6.34251e-5	0.00312723	0.00124725
chr2	61482956	61483023	2690391	0	-	0.358209	(0.33,0.36]	chr2	240329	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000678640.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	77	2	2.25408	2.73691	3.21974	3.43069e-4	3.28853e-6	0.00483423	1.20001e-4
chr1	207794266	207794362	690222	0	+	0.4375	(0.42,0.455]	chr1	70119	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000636114.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.19674	2.736905	3.27707	0.0254904	0.00207325	0.117089	0.0194849
chr9	76386707	76386806	10694385	0	-	0.272727	[0,0.29]	chr9	809404	13	UTR3	UTR3:EXON_MRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1	protein_coding	protein_coding	protein_coding	protein_coding	12	52	2	2.44815	2.736875	3.0256	4.89672e-4	1.41931e-4	0.00687268	0.00239352
chr19	53874982	53875079	17388674	0	+	0.546392	(0.53,0.59]	chr19	1446783	6	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	2.43965	2.73675	3.03385	0.00168039	1.81515e-4	0.0175001	0.00293332
chr1	112703643	112703699	1231834	0	-	0.5	(0.49,0.53]	chr1	120346	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RHOC:RP11-426L16.10	ENSG00000155366.17:ENSG00000271810.5	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000473074.1:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000534717.5:ENST00000436685.6:ENST00000471038.6:ENST00000606505.5:ENST00000605933.5:ENST00000606954.1:ENST00000607158.5:ENST00000528831.5:ENST00000484054.3:ENST00000414971.1:ENST00000478447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	1.78308	2.736725	3.69037	0.0425234	0.0226513	0.167547	0.10505
chr5	179837130	179837225	6415308	0	+	0.357895	(0.33,0.36]	chr5	499339	6	UTR3	UTR3:EXON_MRNA	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.3136	2.73668	3.15976	0.00437542	0.00110072	0.0340502	0.0119958
chr15	90084265	90084353	15437567	0	-	0.568182	(0.53,0.59]	chr15	1221147	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IDH2	ENSG00000182054.10	ENST00000330062.8:ENST00000560061.1:ENST00000559482.5:ENST00000540499.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	2.35511	2.7364499999999996	3.11779	0.0445399	5.11883e-4	0.172163	0.00664583
chr8	29054648	29054747	9250702	0	+	0.363636	(0.36,0.39]	chr8	708711	10	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	24	2	2.28639	2.736405	3.18642	0.00768469	0.00359152	0.050396	0.0302391
chr22	20953356	20953454	18300217	0	+	0.428571	(0.42,0.455]	chr22	1553647	37	UTR3	UTR3:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.11785	2.7363799999999996	3.35491	0.0154862	1.39104e-4	0.0836691	0.00235518
chr2	44231189	44231283	1767120	0	+	0.276596	[0,0.29]	chr2	171419	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-24I5.1:PPM1B	ENSG00000285542.1:ENSG00000138032.21	ENST00000649044.1:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000345249.8:ENST00000459690.5:ENST00000487286.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	2.64823	2.7363299999999997	2.82443	0.0216669	0.0180803	0.103121	0.0920398
chrY	18990868	18990967	19363572	0	-	0.414141	(0.39,0.42]	chrY	1647594	577	INTRON	INTRON	TTTY14	ENSG00000176728.10	ENST00000651734.1:ENST00000651886.1:ENST00000651396.1:ENST00000652699.1:ENST00000650923.1:ENST00000650897.1:ENST00000667260.1:ENST00000651032.1:ENST00000652153.1:ENST00000652348.1:ENST00000454875.2:ENST00000667640.1:ENST00000664804.1:ENST00000657901.1:ENST00000670354.1:ENST00000670243.1:ENST00000669716.1:ENST00000663061.1:ENST00000660026.1:ENST00000667262.1:ENST00000656768.1:ENST00000651355.1:ENST00000669869.1:ENST00000452584.5:ENST00000667617.1:ENST00000651286.1:ENST00000331787.2	lncRNA	lncRNA	lncRNA	lncRNA	4	26	2	1.87119	2.73625	3.60131	0.0373134	4.60576e-4	0.152293	0.00611208
chr20	31782248	31782319	17749792	0	+	0.464789	(0.455,0.49]	chr20	1498051	1	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.69053	2.736205	2.78188	0.0182983	7.46087e-4	0.0925808	0.00892618
chr5	37352736	37352829	6540592	0	-	0.462366	(0.455,0.49]	chr5	506670	1	CDS	CDS:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.69053	2.736205	2.78188	0.0182983	7.46087e-4	0.0925808	0.00892618
chr22	30334303	30334399	18469651	0	-	0.46875	(0.455,0.49]	chr22	1575821	25	UTR3	UTR3:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13	protein_coding	protein_coding	protein_coding	protein_coding	10	56	2	1.97125	2.735865	3.50048	0.00297113	5.99835e-5	0.0254424	0.00130886
chr17	8475503	8475603	16432961	0	-	0.29	[0,0.29]	chr17	1340589	14	UTR3	UTR3:EXON_MRNA	MYH10	ENSG00000133026.13	ENST00000379980.8:ENST00000269243.8:ENST00000360416.8	protein_coding	protein_coding	protein_coding	protein_coding	11	39	2	1.69721	2.73583	3.77445	0.00983711	2.37823e-5	0.0614205	6.17999e-4
chr7	144648078	144648177	9120724	0	-	0.474747	(0.455,0.49]	chr7	696680	10	EXON_PSEUDO	EXON_PSEUDO:INTRON	TPK1:EEF1A1P10	ENSG00000196511.14:ENSG00000243746.1	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5:ENST00000475365.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	9	62	2	2.72931	2.73571	2.74211	0.00330545	4.55281e-5	0.028478	9.49315e-4
chr17	41689038	41689069	16226820	0	+	0.516129	(0.49,0.53]	chr17	1312494	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	129	2	2.65829	2.7356350000000003	2.81298	4.66923e-5	8.06306e-6	0.00107256	2.30541e-4
chrX	154380752	154380802	18917485	0	+	0.44	(0.42,0.455]	chrX	1611785	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EMD	ENSG00000102119.12	ENST00000369835.3:ENST00000369842.9:ENST00000486738.5:ENST00000428228.5:ENST00000485261.1:ENST00000682114.1:ENST00000684678.1:ENST00000683627.1:ENST00000684082.1:ENST00000684633.1:ENST00000682478.1:ENST00000683576.1:ENST00000468294.5:ENST00000492448.1:ENST00000471965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.36247	2.735605	3.10874	0.0462889	5.40397e-4	0.176878	0.00688813
chr1	153991114	153991168	479584	0	+	0.5	(0.49,0.53]	chr1	49569	1	CDS	CDS:EXON_MRNA	RPS27	ENSG00000177954.14	ENST00000651669.1:ENST00000392558.4:ENST00000643794.1:ENST00000493224.5:ENST00000477151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	160	2	2.51406	2.735415	2.95677	4.14698e-5	9.21105e-7	9.75003e-4	3.73454e-5
chr2	63606965	63607044	1850145	0	+	0.35443	(0.33,0.36]	chr2	175443	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MDH1	ENSG00000014641.21	ENST00000544381.4:ENST00000409908.5:ENST00000233114.13:ENST00000539945.7:ENST00000409476.5:ENST00000421012.2:ENST00000432309.6:ENST00000495083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	2.17058	2.73537	3.30016	0.01664	3.58006e-5	0.0878065	7.83575e-4
chr10	96527212	96527289	11640151	0	-	0.376623	(0.36,0.39]	chr10	886566	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000485093.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	53	2	2.02118	2.735275	3.44937	0.0251625	2.85838e-6	0.117055	9.6697e-5
chr5	14796530	14796629	6463506	0	-	0.363636	(0.36,0.39]	chr5	503013	85	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	41	2	2.64542	2.73509	2.82476	8.21459e-4	6.12028e-4	0.0102028	0.00763546
chr15	43405412	43405511	14895789	0	+	0.343434	(0.33,0.36]	chr15	1171082	3	UTR3	UTR3:EXON_MRNA:INTRON	TUBGCP4	ENSG00000137822.13	ENST00000564079.6:ENST00000260383.11:ENST00000563147.5:ENST00000565548.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.31026	2.73501	3.15976	0.0519897	0.00437542	0.18423900000000001	0.0340502
chr1	229490028	229490102	1542321	0	-	0.459459	(0.455,0.49]	chr1	154461	2	CDS	CDS:EXON_MRNA	NUP133	ENSG00000069248.12	ENST00000261396.6	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	1.90955	2.73496	3.56037	0.0171034	5.72551e-4	0.0903636	0.0078026
chr18	2585112	2585202	16726138	0	+	0.388889	(0.36,0.39]	chr18	1379601	1	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.17668	2.7347400000000004	3.2928	0.00353709	2.65442e-4	0.029112	0.004287
chrX	48914130	48914230	19063610	0	-	0.61	(0.59,1]	chrX	1620589	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000485431.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	55	2	2.29319	2.734675	3.17616	0.00750123	0.00434232	0.0495953	0.0339139
chr5	134197672	134197771	6844111	0	-	0.343434	(0.33,0.36]	chr5	523666	35	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000472253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	75	2	2.01701	2.73466	3.45231	0.00697043	3.03831e-7	0.0474694	1.44909e-5
chr1	28458059	28458159	116634	0	+	0.38	(0.36,0.39]	chr1	14205	2	SS5_PROX	SS5_PROX:INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2:ENST00000633167.1:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.44447	2.7342199999999997	3.02397	0.0364669	0.00674398	0.145024	0.0461258
chr2	135169447	135169542	2080910	0	+	0.389474	(0.36,0.39]	chr2	195211	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2:ENST00000497080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	15	2	2.44447	2.7342199999999997	3.02397	0.0364669	0.00674398	0.145024	0.0461258
chr14	49619004	49619104	14614130	0	-	0.44	(0.42,0.455]	chr14	1144073	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL36AL	ENSG00000165502.7	ENST00000298289.7	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	1.75469	2.7341699999999998	3.71365	0.0198622	2.63375e-4	0.0984041	0.00427022
chr7	107196055	107196155	8455525	0	+	0.35	(0.33,0.36]	chr7	645913	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	26	2	2.28792	2.7341699999999998	3.18042	0.0239159	3.92606e-4	0.112531	0.00539371
chr17	49043427	49043488	16256571	0	+	0.557377	(0.53,0.59]	chr17	1317656	1	CDS	CDS:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.34461	2.734005	3.1234	0.0457008	0.00390623	0.168044	0.0322851
chr1	12304653	12304728	48096	0	+	0.586667	(0.53,0.59]	chr1	6276	3	CDS	CDS:EXON_MRNA	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646917.1:ENST00000460333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	22	2	2.35511	2.73393	3.11275	0.0445399	0.00407571	0.172163	0.032143
chr16	47499824	47499894	15644751	0	+	0.585714	(0.53,0.59]	chr16	1243339	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHKB	ENSG00000102893.16	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	22	2	2.35511	2.73393	3.11275	0.0445399	0.00407571	0.172163	0.032143
chr7	101223958	101224035	8431129	0	+	0.584416	(0.53,0.59]	chr7	644164	1	UTR3	UTR3:EXON_MRNA	ZNHIT1	ENSG00000106400.12	ENST00000305105.3:ENST00000485387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	22	2	2.35511	2.73393	3.11275	0.0445399	0.00407571	0.172163	0.032143
chr8	102299451	102299547	9983137	0	-	0.53125	(0.53,0.59]	chr8	753282	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5:ENST00000520898.5:ENST00000519365.1	protein_coding	protein_coding	protein_coding	protein_coding	2	22	2	2.35511	2.73393	3.11275	0.0445399	0.00407571	0.172163	0.032143
chr6	2888964	2889064	7570631	0	-	0.39	(0.36,0.39]	chr6	577661	18	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.2842	2.73384	3.18348	0.0049656	0.00310315	0.0381176	0.0263402
chr1	44767571	44767669	174077	0	+	0.418367	(0.39,0.42]	chr1	22407	5	UTR3	UTR3:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.50974	2.7338	2.95786	0.00138212	0.00123319	0.0149186	0.0131207
chr14	31462890	31462986	14571183	0	-	0.333333	(0.33,0.36]	chr14	1141768	2	EXON_PSEUDO	EXON_PSEUDO	CTD-2213F21.1	ENSG00000239323.1	ENST00000484753.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	25	2	2.70185	2.733675	2.7655	0.0175892	0.00121183	0.0918323	0.0129756
chr6	116243924	116244024	7347815	0	+	0.36	(0.33,0.36]	chr6	564499	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NT5DC1	ENSG00000178425.14	ENST00000319550.9	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.70185	2.733675	2.7655	0.0175892	0.00121183	0.0918323	0.0129756
chr12	104265572	104265660	13058276	0	+	0.659091	(0.59,1]	chr12	1017573	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	TXNRD1:RPL18AP3	ENSG00000198431.16:ENSG00000213442.5	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1:ENST00000462885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	12	168	2	2.62678	2.73365	2.84052	5.07578e-4	5.18765e-5	0.00710966	0.00105915
chr3	38253090	38253190	3420117	0	+	0.51	(0.49,0.53]	chr3	297237	3	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	2.68041	2.733495	2.78658	4.90905e-4	1.13193e-4	0.00688814	0.0020093
chr17	49404991	49405091	16581148	0	-	0.64	(0.59,1]	chr17	1362359	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000511933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	74	2	2.70668	2.73337	2.76006	0.00330486	0.0014458	0.027613	0.0155288
chr12	112141142	112141224	13094457	0	+	0.378049	(0.36,0.39]	chr12	1021520	5	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	TRAFD1	ENSG00000135148.12	ENST00000550051.5:ENST00000257604.9:ENST00000547063.5:ENST00000412615.7:ENST00000552890.5:ENST00000552896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.62565	2.73327	2.84089	0.0219469	0.0128123	0.103959	0.0719798
chr15	51448591	51448689	15279920	0	-	0.367347	(0.36,0.39]	chr15	1205570	10	UTR3	UTR3:EXON_MRNA	DMXL2	ENSG00000104093.14	ENST00000251076.9:ENST00000543779.6:ENST00000560891.6:ENST00000559769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.62565	2.73327	2.84089	0.0219469	0.0128123	0.103959	0.0719798
chr16	30665034	30665079	15630707	0	+	0.377778	(0.36,0.39]	chr16	1240373	1	CDS	CDS:EXON_MRNA:INTRON	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000287468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.62565	2.73327	2.84089	0.0219469	0.0128123	0.103959	0.0719798
chr2	24770124	24770220	1682333	0	+	0.364583	(0.36,0.39]	chr2	164459	19	UTR3	UTR3:EXON_MRNA	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.62565	2.73327	2.84089	0.0219469	0.0128123	0.103959	0.0719798
chr6	158097333	158097430	7517968	0	+	0.360825	(0.36,0.39]	chr6	573786	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000638626.1:ENST00000367112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.62565	2.73327	2.84089	0.0219469	0.0128123	0.103959	0.0719798
chr1	183545120	183545216	597934	0	+	0.541667	(0.53,0.59]	chr1	62098	3	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	11	74	2	2.06935	2.7332	3.39705	0.00131034	1.10308e-4	0.0137851	0.00211768
chr15	101271092	101271184	15476027	0	-	0.521739	(0.49,0.53]	chr15	1223444	4	UTR3	UTR3:EXON_MRNA	SELENOS	ENSG00000131871.15	ENST00000398226.7	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.57891	2.73311	3.88731	0.0281303	4.40111e-6	0.126918	1.3969e-4
chr22	39018485	39018583	18368448	0	+	0.622449	(0.59,1]	chr22	1562849	2	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	166	2	2.26973	2.7331000000000003	3.19647	0.00128768	1.83278e-5	0.0141003	4.53637e-4
chr2	85623657	85623719	1925389	0	+	0.5	(0.49,0.53]	chr2	181223	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000491659.5:ENST00000613444.4:ENST00000450066.6:ENST00000448971.5:ENST00000442708.5:ENST00000465282.5:ENST00000409025.5:ENST00000455732.5:ENST00000409470.5:ENST00000323701.11:ENST00000458268.5:ENST00000409766.7:ENST00000493829.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.38097	2.73292	3.08487	0.0425419	6.09273e-4	0.167547	0.00760626
chr20	32141830	32141895	17752382	0	+	0.476923	(0.455,0.49]	chr20	1498470	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.04847	2.7328650000000003	3.41726	0.0192065	1.55075e-5	0.0943643	3.95473e-4
chr3	119447017	119447094	4399228	0	-	0.493506	(0.49,0.53]	chr3	364734	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TMEM39A	ENSG00000176142.13	ENST00000319172.10:ENST00000438581.6:ENST00000491685.5:ENST00000486159.5:ENST00000486235.5:ENST00000468676.5:ENST00000490099.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	1.78308	2.73277	3.68246	0.0425234	3.06313e-4	0.167547	0.00442973
chr4	138236324	138236387	5665730	0	-	0.444444	(0.42,0.455]	chr4	450248	1	CDS	CDS:EXON_MRNA	SLC7A11	ENSG00000151012.13	ENST00000280612.9	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.40664	2.7327649999999997	3.05889	0.00524205	0.00445101	0.0399155	0.0340751
chr7	74753845	74753937	8338206	0	+	0.478261	(0.455,0.49]	chr7	635509	1	CDS	CDS:EXON_MRNA	GTF2I	ENSG00000263001.7	ENST00000650807.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000482232.1:ENST00000464471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	36	2	2.37552	2.732565	3.08961	0.00445157	0.00134626	0.0340751	0.0145759
chr10	58398825	58398923	11057895	0	+	0.346939	(0.33,0.36]	chr10	841634	39	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.6995	2.7325	2.7655	0.017838	0.0175892	0.0934844	0.0918323
chr16	24219168	24219267	15599279	0	+	0.343434	(0.33,0.36]	chr16	1236920	45	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.6995	2.7325	2.7655	0.017838	0.0175892	0.0934844	0.0918323
chr2	144398537	144398617	2929337	0	-	0.35	(0.33,0.36]	chr2	259642	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.6995	2.7325	2.7655	0.017838	0.0175892	0.0934844	0.0918323
chr6	95607097	95607195	7279272	0	+	0.357143	(0.33,0.36]	chr6	561118	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MANEA	ENSG00000172469.17	ENST00000682076.1:ENST00000683151.1:ENST00000358812.9:ENST00000682663.1:ENST00000684753.1:ENST00000684164.1:ENST00000682417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.6995	2.7325	2.7655	0.017838	0.0175892	0.0934844	0.0918323
chr9	112487917	112488017	10421361	0	+	0.36	(0.33,0.36]	chr9	784565	4	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.6995	2.7325	2.7655	0.017838	0.0175892	0.0934844	0.0918323
chr17	50381820	50381917	16585111	0	-	0.443299	(0.42,0.455]	chr17	1363112	7	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.7601	2.732485	3.70487	0.0312663	1.55091e-5	0.132093	3.95473e-4
chrX	153691303	153691386	18915591	0	+	0.554217	(0.53,0.59]	chrX	1611175	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000675713.1:ENST00000466243.1:ENST00000467402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	82	2	2.72408	2.732395	2.74071	3.72688e-4	7.83491e-5	0.00559101	0.00148897
chr5	181265577	181265676	6418287	0	+	0.585859	(0.53,0.59]	chr5	499773	11	INTRON	INTRON	CTC-338M12.4:TRIM52-AS1	ENSG00000233937.7:ENSG00000248275.2	ENST00000511331.5:ENST00000507434.1	lncRNA	lncRNA	lncRNA	lncRNA	111	1094	2	1.41706	2.7322450000000003	4.04743	0.00310737	1e-12	0.0274272	2.25522e-10
chr4	150852269	150852365	5731376	0	-	0.479167	(0.455,0.49]	chr4	452901	5	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.50904	2.73215	2.95526	0.0310515	2.88167e-4	0.131262	0.00423739
chr15	59117297	59117368	14959923	0	+	0.450704	(0.42,0.455]	chr15	1175704	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	37	2	2.59462	2.732125	2.86963	0.0062772	4.62477e-4	0.0445415	0.00613242
chr1	6224481	6224580	842577	0	-	0.30303	(0.29,0.33]	chr1	84936	34	UTR3	UTR3:EXON_MRNA	ICMT	ENSG00000116237.16	ENST00000343813.10:ENST00000489498.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	34	2	2.50329	2.73209	2.96089	0.00142661	5.56633e-4	0.0146595	0.0076748
chr7	135594637	135594729	8552772	0	+	0.456522	(0.455,0.49]	chr7	652747	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.10347	2.731985	3.3605	0.0313707	0.00147278	0.13127	0.0157578
chr11	46743827	46743924	12383478	0	-	0.494845	(0.49,0.53]	chr11	955986	9	UTR3	UTR3:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	11	78	2	2.71154	2.731845	2.75215	8.79689e-4	3.12541e-5	0.0107294	6.97306e-4
chr1	19093948	19094043	875785	0	-	0.473684	(0.455,0.49]	chr1	89930	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1:ENST00000467272.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.46624	2.73147	2.9967	0.0094145	0.00650423	0.0592633	0.0454205
chr11	62723656	62723726	12410660	0	-	0.471429	(0.455,0.49]	chr11	961537	2	CDS	CDS:EXON_MRNA	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7:ENST00000540127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.46624	2.73147	2.9967	0.0094145	0.00650423	0.0592633	0.0454205
chr17	44860431	44860487	16560012	0	-	0.482143	(0.455,0.49]	chr17	1359731	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7:ENST00000585616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	23	2	2.46624	2.73147	2.9967	0.0094145	0.00650423	0.0592633	0.0454205
chr6	30070146	30070239	7110082	0	+	0.516129	(0.49,0.53]	chr6	544501	10	UTR3	UTR3:EXON_MRNA	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6:ENST00000376765.6:ENST00000376763.5:ENST00000376758.1	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	2.53011	2.731465	2.93282	0.00254862	3.30011e-4	0.0227869	0.00504024
chr2	38482136	38482231	1748002	0	+	0.589474	(0.53,0.59]	chr2	169990	4	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	143	2	2.7108	2.7314499999999997	2.7521	5.40114e-5	7.86167e-6	0.00120298	2.25189e-4
chr7	121296248	121296348	8496832	0	+	0.29	[0,0.29]	chr7	648451	7	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	19	88	2	2.53592	2.7314	2.92688	2.66139e-4	1.51939e-6	0.00429759	5.68155e-5
chr1	228097077	228097114	744016	0	+	0.621622	(0.59,1]	chr1	75084	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ARF1:MIR3620	ENSG00000143761.16:ENSG00000284163.1	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000473546.1:ENST00000482962.5:ENST00000497165.5:ENST00000490705.1:ENST00000584469.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	2	34	2	2.69477	2.731395	2.76802	0.020208	0.0158525	0.0978331	0.0854671
chr12	56725340	56725437	13352613	0	-	0.649485	(0.59,1]	chr12	1051870	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NACA:RP11-112B10.2	ENSG00000196531.14:ENSG00000285625.1	ENST00000356769.7:ENST00000546392.6:ENST00000549855.5:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.69477	2.731395	2.76802	0.020208	0.0158525	0.0978331	0.0854671
chr16	88807050	88807126	15807303	0	+	0.671053	(0.59,1]	chr16	1258131	1	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9:ENST00000569140.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.69477	2.731395	2.76802	0.020208	0.0158525	0.0978331	0.0854671
chr18	80136410	80136510	16969659	0	+	0.62	(0.59,1]	chr18	1395617	9	CDS	CDS:EXON_MRNA:INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.69477	2.731395	2.76802	0.020208	0.0158525	0.0978331	0.0854671
chr1	19144846	19144907	876359	0	-	0.442623	(0.42,0.455]	chr1	90143	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000465036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.57051	2.7312149999999997	2.89192	0.0265466	0.00157686	0.120071	0.015761
chr10	70424236	70424336	11100473	0	+	0.45	(0.42,0.455]	chr10	844350	26	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.57051	2.7312149999999997	2.89192	0.0265466	0.00157686	0.120071	0.015761
chr3	100365466	100365563	4325504	0	-	0.43299	(0.42,0.455]	chr3	360552	22	UTR3	UTR3:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.57051	2.7312149999999997	2.89192	0.0265466	0.00157686	0.120071	0.015761
chr2	43943686	43943785	2623510	0	-	0.424242	(0.42,0.455]	chr2	236188	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000684397.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	78	2	2.69779	2.730995	2.7642	1.43049e-4	5.67322e-5	0.00262236	0.00114271
chr18	21612313	21612371	16777547	0	+	0.62069	(0.59,1]	chr18	1384058	1	UTR5	UTR5:EXON_MRNA	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	3	48	2	2.61074	2.730985	2.85123	0.025486	0.0022846	0.117089	0.0209856
chr5	139283530	139283601	6248615	0	+	0.478873	(0.455,0.49]	chr5	486931	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	24	2	2.53286	2.7309349999999997	2.92901	0.0282409	0.00141135	0.124386	0.0151901
chr1	173488624	173488719	548629	0	+	0.368421	(0.36,0.39]	chr1	58305	9	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.63702	2.730915	2.82481	0.00212882	6.14057e-4	0.0206577	0.00765639
chr15	52064900	52065000	14935498	0	+	0.38	(0.36,0.39]	chr15	1174234	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MAPK6	ENSG00000069956.13	ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.63702	2.730915	2.82481	0.00212882	6.14057e-4	0.0206577	0.00765639
chr12	98601367	98601428	13036978	0	+	0.491803	(0.49,0.53]	chr12	1015024	1	CDS	CDS:UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1:ENST00000547869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.70962	2.730885	2.75215	8.79689e-4	1.8355e-4	0.0107294	0.00296537
chr6	26199839	26199939	7101574	0	+	0.63	(0.59,1]	chr6	542851	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC7	ENSG00000277224.2	ENST00000356530.5	protein_coding	protein_coding	protein_coding	protein_coding	8	83	2	1.72077	2.730805	3.74084	0.0137395	4.03818e-4	0.0760883	0.00550292
chr4	139698471	139698554	5671438	0	-	0.554217	(0.53,0.59]	chr4	450574	5	EXON_PSEUDO	EXON_PSEUDO	H3P16	ENSG00000178458.5	ENST00000230495.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	42	2	1.92179	2.7305450000000002	3.5393	0.0100259	6.46017e-4	0.0623334	0.00799743
chr12	54405304	54405374	13343831	0	-	0.685714	(0.59,1]	chr12	1049806	3	CDS	CDS:UTR3:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5:ENST00000435631.6:ENST00000553071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	46	2	2.6115	2.73047	2.84944	0.0128238	0.00584247	0.0719798	0.0422426
chr8	140531044	140531143	10132153	0	-	0.434343	(0.42,0.455]	chr8	760954	110	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.55474	2.73045	2.90616	0.00228741	0.00162359	0.0210026	0.0169915
chrX	55021199	55021274	19084680	0	-	0.426667	(0.42,0.455]	chrX	1623763	3	CDS	CDS:EXON_MRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	2.33282	2.730385	3.12795	0.00677333	1.0291e-4	0.0462932	0.00184556
chr11	8684005	8684081	11790599	0	+	0.605263	(0.59,1]	chr11	902648	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	544	2	2.42717	2.7303249999999997	3.03348	8.77688e-5	7.15078e-7	0.00178297	3.00395e-5
chr7	103551142	103551219	8963777	0	-	0.623377	(0.59,1]	chr7	686182	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000679952.1:ENST00000681199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	62	2	2.36593	2.7302400000000002	3.09455	0.0141097	7.92671e-4	0.077233	0.00933379
chr8	143580088	143580188	10145102	0	-	0.66	(0.59,1]	chr8	762490	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EEF1D	ENSG00000104529.18	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000618139.3:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000526838.5:ENST00000532741.5:ENST00000527741.5:ENST00000530109.5:ENST00000529576.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	88	2	2.4608	2.7302	2.9996	0.00407427	3.344e-4	0.0324137	0.00472923
chrX	154436337	154436426	18917924	0	+	0.561798	(0.53,0.59]	chrX	1611929	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP6AP1	ENSG00000071553.18	ENST00000677342.1:ENST00000439372.6:ENST00000369762.7:ENST00000679241.1:ENST00000455205.5:ENST00000491569.5:ENST00000678317.1:ENST00000677332.1:ENST00000619046.5:ENST00000484908.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	1.78041	2.73017	3.67993	0.0407112	3.22778e-4	0.163285	0.0046122
chr2	157286014	157286074	2152385	0	+	0.316667	(0.29,0.33]	chr2	198585	1	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.49936	2.730125	2.96089	0.00917022	5.56633e-4	0.0580029	0.0076748
chr8	47893221	47893304	9816732	0	-	0.686747	(0.59,1]	chr8	742767	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.21052	2.73012	3.24972	0.010462	0.00314037	0.063428	0.0264943
chr5	134160986	134161058	6843733	0	-	0.402778	(0.39,0.42]	chr5	523632	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5:ENST00000520417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	55	2	2.16078	2.73001	3.29924	0.00370921	1.02206e-5	0.0302984	3.07123e-4
chr2	126557434	126557525	2864142	0	-	0.450549	(0.42,0.455]	chr2	255780	1	EXON_PSEUDO	EXON_PSEUDO	YWHAZP2	ENSG00000213236.3	ENST00000440317.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	67	2	2.69779	2.7297000000000002	2.76161	9.19052e-4	5.67322e-5	0.0111046	0.00114271
chr16	28844996	28845055	15907782	0	-	0.559322	(0.53,0.59]	chr16	1273901	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1:ENST00000561644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.97928	2.7295949999999998	3.47991	0.0218546	6.7738e-5	0.104785	0.0013157
chr17	49051809	49051907	16256664	0	+	0.306122	(0.29,0.33]	chr17	1317683	25	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	17	76	2	2.50154	2.72959	2.95764	1.16978e-4	8.81531e-6	0.00222617	2.48294e-4
chr6	30891379	30891479	7112914	0	+	0.56	(0.53,0.59]	chr6	545169	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:PRIMIRNA:INTRON	DDR1:MIR4640	ENSG00000204580.14:ENSG00000284370.1	ENST00000460944.6:ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000428153.6:ENST00000376568.8:ENST00000452441.5:ENST00000515219.5:ENST00000482873.6:ENST00000508312.5:ENST00000421124.6:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000376575.7:ENST00000424544.2:ENST00000581824.1:ENST00000508472.5:ENST00000507533.1:ENST00000485023.1:ENST00000417521.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	3	28	2	2.16037	2.72956	3.29875	0.0254312	0.00191422	0.117089	0.018324
chr4	24529600	24529685	5358717	0	-	0.364706	(0.36,0.39]	chr4	429821	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5:ENST00000336812.5:ENST00000508032.5:ENST00000512903.1:ENST00000513036.5:ENST00000508368.1:ENST00000504279.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.6181	2.729495	2.84089	0.0128123	0.00176908	0.0719798	0.0172426
chr8	30353421	30353518	9253467	0	+	0.412371	(0.39,0.42]	chr8	708964	17	EXON_LNCRNA	EXON_LNCRNA	TUBBP1	ENSG00000127589.4	ENST00000518096.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	21	2	2.34349	2.72949	3.11549	0.0169272	0.00403491	0.0890655	0.032143
chr15	44561830	44561927	14899897	0	+	0.391753	(0.39,0.42]	chr15	1171685	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	64	2	2.34967	2.72946	3.10925	5.31536e-4	4.03163e-5	0.00682681	9.6174e-4
chr3	14945856	14945955	4050055	0	-	0.414141	(0.39,0.42]	chr3	340108	32	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1:ENST00000661022.1:ENST00000417835.1:ENST00000426200.1:ENST00000440079.1	lncRNA	lncRNA	lncRNA	lncRNA	6	37	2	2.22707	2.729405	3.23174	0.00574688	2.82122e-4	0.0426551	0.00415762
chr17	1673496	1673567	16401519	0	-	0.56338	(0.53,0.59]	chr17	1334902	3	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.14885	2.72914	3.30943	0.0262993	0.0018255	0.117164	0.0183913
chr16	1691842	1691913	15488593	0	+	0.549296	(0.53,0.59]	chr16	1226173	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000569256.5:ENST00000567717.1:ENST00000562684.5:ENST00000248098.8:ENST00000561516.5:ENST00000382711.9:ENST00000566742.5:ENST00000569765.5:ENST00000566925.5:ENST00000382710.8:ENST00000566691.5:ENST00000565851.5:ENST00000568376.1:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.54844	2.72911	2.90978	0.00857883	0.00663226	0.0552386	0.0461575
chr7	44014686	44014783	8796219	0	-	0.556701	(0.53,0.59]	chr7	670621	30	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	POLR2J4:RP5-1165K10.2:RP5-1022I14.2	ENSG00000214783.9:ENSG00000273432.1:ENSG00000285596.1:ENSG00000272655.2	ENST00000427076.5:ENST00000454572.1:ENST00000422304.1:ENST00000648264.1:ENST00000326391.6:ENST00000418424.2	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	3	28	2	2.54844	2.72911	2.90978	0.00857883	0.00663226	0.0552386	0.0461575
chr5	44815007	44815102	5961578	0	+	0.368421	(0.36,0.39]	chr5	467217	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	31	2	2.69035	2.7290650000000003	2.76778	0.00365703	0.00123789	0.0307238	0.013161
chrX	78118050	78118110	18747067	0	+	0.5	(0.49,0.53]	chrX	1599831	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	97	2	2.57984	2.72906	2.87828	1.25345e-4	1.55123e-5	0.00217501	4.35031e-4
chr11	66643837	66643934	11991535	0	+	0.608247	(0.59,1]	chr11	922205	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.68392	2.72905	2.77418	0.0202468	0.0160729	0.0984041	0.0860154
chr3	100283674	100283742	3634370	0	+	0.338235	(0.33,0.36]	chr3	311496	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TBC1D23	ENSG00000036054.13	ENST00000394144.9:ENST00000485687.5:ENST00000344949.9:ENST00000486274.5:ENST00000471098.1:ENST00000475134.1:ENST00000484231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	2.51887	2.7288550000000003	2.93884	0.0358636	0.00135211	0.147298	0.0140654
chr3	186784629	186784696	3958223	0	+	0.402985	(0.39,0.42]	chr3	333847	2	CDS	CDS:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000441007.5:ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000491473.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	56	2	2.70128	2.7287350000000004	2.75619	5.30354e-4	1.38708e-4	0.00739546	0.00235122
chr22	21687642	21687732	18303674	0	+	0.444444	(0.42,0.455]	chr22	1554355	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	41	2	2.62346	2.728705	2.83395	0.00164881	6.25227e-4	0.0163523	0.00830005
chr17	58089776	58089875	16287298	0	+	0.545455	(0.53,0.59]	chr17	1320910	6	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	10	76	2	2.09406	2.728585	3.36311	0.00212471	2.33543e-5	0.0198408	6.09608e-4
chr5	138934278	138934372	6248103	0	+	0.308511	(0.29,0.33]	chr5	486857	3	UTR3	UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000522792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	33	2	2.63813	2.7285500000000003	2.81897	0.00803229	2.43076e-4	0.0528968	0.00367789
chr6	33276175	33276267	7121554	0	+	0.576087	(0.53,0.59]	chr6	547509	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1:ENST00000479802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	80	613	2	2.04851	2.7285399999999997	3.40857	5.60834e-5	6.27987e-10	0.00113242	7.59962e-8
chr21	14373519	14373616	18163689	0	-	0.319588	(0.29,0.33]	chr21	1542397	26	UTR3	UTR3:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.24226	2.728405	3.21455	0.0306054	0.00283988	0.130226	0.0245061
chr6	31816910	31817006	7116672	0	+	0.666667	(0.59,1]	chr6	546204	12	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	9	131	2	2.20648	2.728265	3.25005	0.00341703	3.52567e-5	0.0283456	8.59798e-4
chr22	30970707	30970806	18344789	0	+	0.50505	(0.49,0.53]	chr22	1559157	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.01464	2.7280699999999998	3.4415	0.0205094	9.98297e-4	0.0991175	0.0111246
chr6	33417480	33417568	7669561	0	-	0.613636	(0.59,1]	chr6	587677	1	CDS	CDS:UTR3:EXON_MRNA	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000462802.5:ENST00000479249.5:ENST00000374484.8:ENST00000482684.5:ENST00000488478.5:ENST00000494751.5:ENST00000607266.5:ENST00000465956.1:ENST00000440279.7:ENST00000487637.1:ENST00000374496.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	122	2	2.56727	2.72788	2.88849	6.26999e-4	3.80286e-4	0.00831935	0.00527451
chr15	82536800	82536881	15412527	0	-	0.518519	(0.49,0.53]	chr15	1218652	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CH17-66N5.1:RPS17:RP11-152F13.10	ENSG00000284803.1:ENSG00000182774.13:ENSG00000260836.2	ENST00000561440.2:ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000561068.5:ENST00000560612.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:lncRNA	31	213	2	2.59336	2.7275400000000003	2.86172	1.29153e-5	4.73807e-7	3.7209e-4	2.10792e-5
chr7	128086994	128087051	8519322	0	+	0.596491	(0.59,1]	chr7	649809	2	CDS	CDS:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	46	2	2.03921	2.727285	3.41536	0.0371471	0.00164655	0.151849	0.0163443
chr8	47960026	47960126	9817438	0	-	0.71	(0.59,1]	chr8	742933	1	CDS_START	CDS_START:CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	1.66744	2.7271	3.78676	0.0369183	3.60514e-4	0.145208	0.00544284
chr5	138425496	138425582	6244545	0	+	0.430233	(0.42,0.455]	chr5	486568	2	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000505756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.54043	2.72708	2.91373	0.00892357	0.00705852	0.0567495	0.047732
chr4	87892730	87892829	4942243	0	+	0.464646	(0.455,0.49]	chr4	406011	10	EXON_PSEUDO	EXON_PSEUDO	HSP90AB3P	ENSG00000183199.6	ENST00000505987.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	52	2	2.35972	2.727005	3.09429	0.0058634	3.75881e-5	0.0427941	8.15231e-4
chr7	97181580	97181671	8417067	0	+	0.274725	[0,0.29]	chr7	640854	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000479853.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	35	2	1.97252	2.72683	3.48114	0.00462732	1.59721e-4	0.0353513	0.00286408
chr3	98585513	98585586	4319596	0	-	0.520548	(0.49,0.53]	chr3	360265	2	CDS	CDS:EXON_MRNA	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000510489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	43	2	2.42431	2.72661	3.02891	0.0018555	8.23332e-4	0.0178545	0.0102121
chr22	19435787	19435862	18295309	0	+	0.546667	(0.53,0.59]	chr22	1552703	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL40	ENSG00000185608.9	ENST00000333130.4:ENST00000443660.5:ENST00000471259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	62	2	2.56002	2.72649	2.89296	0.00634904	5.81444e-5	0.0446708	0.00116944
chr11	71444854	71444952	12444509	0	-	0.55102	(0.53,0.59]	chr11	967012	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	DHCR7	ENSG00000172893.17	ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000683714.1:ENST00000682880.1:ENST00000527316.5:ENST00000683874.1:ENST00000526780.5:ENST00000525346.5:ENST00000531364.5:ENST00000529990.5:ENST00000527452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.0693	2.726385	3.38347	0.0160468	0.00132446	0.0860154	0.0138834
chr10	17236293	17236379	10938846	0	+	0.418605	(0.39,0.42]	chr10	833008	1	CDS	CDS:UTR3:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	142	2	1.53	2.725855	3.92171	0.00820505	1.59031e-9	0.0539359	1.59251e-7
chr2	174310206	174310302	3022083	0	-	0.520833	(0.49,0.53]	chr2	267491	3	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P39	ENSG00000237804.1	ENST00000440547.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	53	2	1.72711	2.725855	3.7246	0.0162279	1.36405e-5	0.0864269	3.54667e-4
chr17	53757380	53757478	16598926	0	-	0.622449	(0.59,1]	chr17	1363765	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-213B3.1:RPS2P48	ENSG00000285939.2:ENSG00000233380.1	ENST00000650577.1:ENST00000441047.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	35	2	2.39747	2.725835	3.0542	0.0430221	0.00663549	0.161091	0.0456243
chr19	51353210	51353290	17614125	0	-	0.625	(0.59,1]	chr19	1485866	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ETFB:CTD-2616J11.11	ENSG00000105379.10:ENSG00000269403.1	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1:ENST00000593992.1:ENST00000600067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	35	2	2.39747	2.725835	3.0542	0.0430221	0.00663549	0.161091	0.0456243
chr11	117170060	117170159	12154366	0	+	0.292929	(0.29,0.33]	chr11	936189	25	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	37	2	1.84264	2.7257700000000002	3.6089	0.0081759	5.55178e-5	0.0532189	0.00123377
chr3	184176993	184177067	3948166	0	+	0.486486	(0.455,0.49]	chr3	331997	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000484469.5:ENST00000292807.9:ENST00000411763.6:ENST00000487958.5:ENST00000427072.5:ENST00000448139.5:ENST00000466598.5:ENST00000460862.5:ENST00000455925.1:ENST00000439647.5:ENST00000432591.5:ENST00000472560.5:ENST00000431779.5:ENST00000621863.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	40	2	1.48669	2.7256650000000002	3.96464	0.030677	6.27408e-5	0.130016	0.00135074
chr11	64768195	64768286	12419220	0	-	0.505495	(0.49,0.53]	chr11	962901	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000486867.1:ENST00000489544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	52	2	2.25637	2.7256	3.19483	0.00420813	6.77168e-5	0.0329484	0.0013157
chr17	68043993	68044071	16333821	0	+	0.5	(0.49,0.53]	chr17	1325129	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	53	2	1.9035	2.725485	3.54747	0.0295204	6.21089e-6	0.129773	1.85694e-4
chr15	29708940	29709036	15183865	0	-	0.4375	(0.42,0.455]	chr15	1195093	5	CDS	CDS:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1:ENST00000545208.6	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.34191	2.7253249999999998	3.10874	0.0159091	5.40397e-4	0.0854674	0.00688813
chr10	46005369	46005463	11470917	0	-	0.404255	(0.39,0.42]	chr10	874825	4	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	18	142	2	1.86175	2.725025	3.5883	0.00605112	5.5654e-9	0.0437023	4.68776e-7
chr10	5456994	5457092	10909069	0	+	0.377551	(0.36,0.39]	chr10	830430	1	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	10	60	2	2.35478	2.7249	3.09502	0.00193274	1.38423e-5	0.0192272	3.5918e-4
chr18	36154924	36154999	16825141	0	+	0.373333	(0.36,0.39]	chr18	1387607	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.1437	2.724805	3.30591	0.0340515	1.89047e-4	0.141465	0.003022
chr11	65997913	65998011	12423533	0	-	0.459184	(0.455,0.49]	chr11	964316	15	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.35972	2.724665	3.08961	0.0058634	0.00445157	0.0427941	0.0340751
chr11	34089394	34089456	11905375	0	+	0.435484	(0.42,0.455]	chr11	909549	1	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	69	2	2.5451	2.72466	2.90422	0.00112955	2.46215e-5	0.0128875	5.75275e-4
chr12	57234361	57234456	12902155	0	+	0.505263	(0.49,0.53]	chr12	1005218	1	UTR3	UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	2.45056	2.724525	2.99849	0.00630123	8.30002e-4	0.0445415	0.00973943
chr8	108233429	108233526	10002627	0	-	0.350515	(0.33,0.36]	chr8	754201	35	UTR3	UTR3:EXON_MRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	28	2	1.97993	2.7245049999999997	3.46908	0.00884101	0.00114872	0.0563713	0.0130528
chr17	43015963	43016060	16550651	0	-	0.525773	(0.49,0.53]	chr17	1357992	15	UTR3	UTR3:EXON_MRNA	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1:ENST00000587173.5:ENST00000420567.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	39	2	2.11783	2.7244099999999998	3.33099	0.0142725	1.59567e-4	0.0780078	0.00263091
chr1	186356367	186356449	1412188	0	-	0.451219	(0.42,0.455]	chr1	142948	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000491783.5:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	40	2	2.13718	2.724395	3.31161	0.00257517	0.00186138	0.0229531	0.018635
chr1	212104223	212104322	701726	0	+	0.292929	(0.29,0.33]	chr1	71180	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr14	92161744	92161843	14458438	0	+	0.323232	(0.29,0.33]	chr14	1128971	1	UTR3	UTR3:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr15	78498043	78498143	15040131	0	+	0.33	(0.29,0.33]	chr15	1183143	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IREB2	ENSG00000136381.13	ENST00000258886.13:ENST00000558570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr2	75657460	75657559	1894583	0	+	0.313131	(0.29,0.33]	chr2	179770	23	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr20	35650523	35650623	17954962	0	-	0.31	(0.29,0.33]	chr20	1521105	17	UTR3	UTR3:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr3	194404245	194404343	4654482	0	-	0.306122	(0.29,0.33]	chr3	384345	17	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr6	15521047	15521146	7066941	0	+	0.313131	(0.29,0.33]	chr6	540811	9	UTR3	UTR3:EXON_MRNA	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr7	156628697	156628797	9145306	0	-	0.32	(0.29,0.33]	chr7	699136	67	INTRON	INTRON	LINC01006	ENSG00000182648.13	ENST00000651649.1:ENST00000652322.1:ENST00000656672.1:ENST00000661405.1:ENST00000656928.1:ENST00000661595.1:ENST00000656505.1:ENST00000447933.6:ENST00000660473.1:ENST00000671433.1:ENST00000656837.1:ENST00000663891.1:ENST00000458645.5:ENST00000418309.1:ENST00000664734.1	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr9	15464328	15464425	10191455	0	+	0.309278	(0.29,0.33]	chr9	766895	3	INTRON	INTRON	SNAPC3	ENSG00000164975.15	ENST00000467062.5:ENST00000610884.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.67277	2.72431	2.77585	0.0255386	0.0143131	0.117089	0.0780602
chr16	8893521	8893616	15844375	0	-	0.389474	(0.36,0.39]	chr16	1265410	16	UTR3	UTR3:EXON_MRNA	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.38564	2.7242800000000003	3.06292	0.0476159	0.00499846	0.17993	0.0370021
chr4	78809967	78810067	4911659	0	+	0.39	(0.36,0.39]	chr4	404312	329	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.38564	2.7242800000000003	3.06292	0.0476159	0.00499846	0.17993	0.0370021
chr9	76385525	76385623	10694373	0	-	0.244898	[0,0.29]	chr9	809404	1	UTR3	UTR3:EXON_MRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.15488	2.7242800000000003	3.29368	0.0436536	4.04464e-5	0.170594	8.69119e-4
chrX	119583255	119583352	18841634	0	+	0.360825	(0.36,0.39]	chrX	1605602	1	UTR3	UTR3:EXON_MRNA:INTRON	UBE2A	ENSG00000077721.16	ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000628549.1:ENST00000371569.6:ENST00000628734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.38564	2.7242800000000003	3.06292	0.0476159	0.00499846	0.17993	0.0370021
chr10	110286176	110286275	11250205	0	+	0.40404	(0.39,0.42]	chr10	857033	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000361248.8:ENST00000239007.11:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000652463.1:ENST00000650810.1:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000652323.1:ENST00000651112.1:ENST00000485566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	82	2	1.72762	2.72418	3.72074	0.00441528	3.2887e-7	0.033932	1.73684e-5
chr6	2948913	2948991	7570810	0	-	0.461538	(0.455,0.49]	chr6	577713	1	CDS	CDS:UTR3:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	2.52734	2.724165	2.92099	0.00792433	0.00138399	0.0523592	0.0143168
chr5	10394081	10394143	5875110	0	+	0.435484	(0.42,0.455]	chr5	461949	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	81	2	2.37568	2.724085	3.07249	8.0114e-4	7.14476e-6	0.00996644	2.09998e-4
chr11	47167975	47168043	12385363	0	-	0.544118	(0.53,0.59]	chr11	956442	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5:ENST00000527927.5:ENST00000532478.5:ENST00000525635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	29	2	2.65894	2.7239649999999997	2.78899	0.0193255	0.00245784	0.0943643	0.0221765
chr7	135606832	135606915	8552902	0	+	0.421687	(0.42,0.455]	chr7	652793	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5:ENST00000463247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	48	2	2.13718	2.723955	3.31073	0.00257517	1.94134e-4	0.0229531	0.00332542
chr19	55670367	55670455	17397315	0	+	0.579545	(0.53,0.59]	chr19	1448937	3	INTRON	INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding	12	96	2	2.31344	2.72386	3.13428	6.47209e-4	1.10636e-5	0.00801134	3.28953e-4
chr5	134388334	134388413	6228782	0	+	0.341772	(0.33,0.36]	chr5	485019	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UBE2B	ENSG00000119048.8	ENST00000510021.5:ENST00000511807.1:ENST00000265339.7:ENST00000506787.5:ENST00000507277.1:ENST00000499038.2:ENST00000503080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.07736	2.723475	3.36959	0.0442037	0.0014168	0.172163	0.0145694
chr1	32856820	32856918	131250	0	+	0.418367	(0.39,0.42]	chr1	16241	9	UTR3	UTR3:EXON_MRNA	S100PBP	ENSG00000116497.18	ENST00000373476.5:ENST00000373475.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.55844	2.7234	2.88836	0.0263695	0.0102432	0.117164	0.062872
chr12	100338890	100338981	13039812	0	+	0.406593	(0.39,0.42]	chr12	1015442	5	CDS	CDS:EXON_MRNA	SCYL2	ENSG00000136021.19	ENST00000360820.7:ENST00000635101.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.55844	2.7234	2.88836	0.0263695	0.0102432	0.117164	0.062872
chr20	35349970	35350069	17953032	0	-	0.40404	(0.39,0.42]	chr20	1520729	23	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.55844	2.7234	2.88836	0.0263695	0.0102432	0.117164	0.062872
chr8	73323426	73323524	9405530	0	+	0.397959	(0.39,0.42]	chr8	718052	5	UTR3	UTR3:EXON_MRNA	RDH10	ENSG00000121039.10	ENST00000240285.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.55844	2.7234	2.88836	0.0263695	0.0102432	0.117164	0.062872
chr6	30562872	30562967	7111346	0	+	0.421053	(0.42,0.455]	chr6	544798	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRR3	ENSG00000204576.12	ENST00000376557.3:ENST00000376560.8:ENST00000481741.5:ENST00000498336.5:ENST00000470703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	29	2	2.54043	2.7232950000000002	2.90616	0.00705852	0.00162359	0.047732	0.0169915
chr6	36470197	36470257	7134285	0	+	0.466667	(0.455,0.49]	chr6	549528	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000483557.5:ENST00000474988.5:ENST00000498267.5:ENST00000481911.5:ENST00000449081.6:ENST00000265344.8:ENST00000460983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.69053	2.7232	2.75587	0.0182983	0.00293507	0.0925808	0.025146
chrX	41674287	41674385	19049237	0	-	0.397959	(0.39,0.42]	chrX	1619182	24	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643853.1:ENST00000643831.2:ENST00000647118.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.49701	2.72309	2.94917	0.0339607	0.00121791	0.141431	0.0130188
chr17	59651202	59651259	16295126	0	+	0.438596	(0.42,0.455]	chr17	1321622	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	78	2	2.57196	2.72306	2.87416	2.47052e-4	3.04637e-5	0.00405266	6.83179e-4
chr1	231365129	231365227	1548251	0	-	0.408163	(0.39,0.42]	chr1	155129	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	2.30055	2.7229099999999997	3.14527	0.0070645	5.33048e-4	0.0477419	0.00742114
chr2	36845867	36845967	2594572	0	-	0.48	(0.455,0.49]	chr2	233508	83	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.98188	2.7228850000000002	3.46389	0.0226804	9.14164e-4	0.105116	0.0110519
chr1	220141875	220141948	720495	0	+	0.424658	(0.42,0.455]	chr1	72585	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IARS2	ENSG00000067704.10	ENST00000366922.3:ENST00000467924.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	2.03532	2.722865	3.41041	0.040947	1.00299e-4	0.163285	0.00180803
chr3	31624999	31625085	3392380	0	+	0.430233	(0.42,0.455]	chr3	295074	2	CDS	CDS:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.03532	2.722865	3.41041	0.040947	1.00299e-4	0.163285	0.00180803
chr7	130134911	130135010	8529074	0	+	0.50505	(0.49,0.53]	chr7	651128	43	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.9035	2.72234	3.54118	0.0295204	4.50577e-5	0.129773	9.4221e-4
chr7	29030667	29030759	8744597	0	-	0.554348	(0.53,0.59]	chr7	667249	2	CDS	CDS:EXON_MRNA	CPVL	ENSG00000106066.15	ENST00000265394.10:ENST00000396276.7:ENST00000432534.5:ENST00000409850.5:ENST00000455893.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.515	2.7223100000000002	2.92962	0.0292633	0.0012954	0.129773	0.0136936
chr10	68946630	68946702	11093118	0	+	0.347222	(0.33,0.36]	chr10	843209	1	UTR3	UTR3:EXON_MRNA	DDX50	ENSG00000107625.14	ENST00000373585.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.28465	2.7222049999999998	3.15976	0.0188404	0.00437542	0.0958835	0.0340502
chrX	23987724	23987822	19005965	0	-	0.336735	(0.33,0.36]	chrX	1617228	42	UTR3	UTR3:EXON_MRNA	KLHL15	ENSG00000174010.9	ENST00000328046.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.28465	2.7222049999999998	3.15976	0.0188404	0.00437542	0.0958835	0.0340502
chr1	93180142	93180242	1171471	0	-	0.67	(0.59,1]	chr1	115403	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.5215	2.72215	2.9228	0.032241	0.00981698	0.135671	0.0612992
chr17	30465673	30465768	16186723	0	+	0.368421	(0.36,0.39]	chr17	1306518	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000584221.2	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.85874	2.72175	3.58476	0.0415243	5.01956e-4	0.164804	0.00653592
chr19	48900796	48900896	17367621	0	+	0.71	(0.59,1]	chr19	1442103	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	71	2	2.0276	2.72148	3.41536	0.00749449	0.00164655	0.0499027	0.0163443
chr1	167553556	167553641	1347955	0	-	0.8	(0.59,1]	chr1	138011	3	CDS	CDS:EXON_MRNA	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	2.55445	2.72147	2.88849	6.69187e-4	6.26999e-4	0.00831935	0.00820018
chr14	95544125	95544224	14471354	0	+	0.545455	(0.53,0.59]	chr14	1130380	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.3186	2.721	3.1234	0.00390623	0.00299541	0.0322851	0.0256157
chr3	13316812	13316908	4046189	0	-	0.510417	(0.49,0.53]	chr3	339510	7	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.49797	2.721	2.94403	0.00843736	0.00122634	0.0546021	0.0130695
chr5	138507727	138507823	6861953	0	-	0.395833	(0.39,0.42]	chr5	525116	18	UTR3	UTR3:EXON_MRNA	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.3855	2.721	3.0565	0.0049615	1.93131e-4	0.0368419	0.0033147
chr15	41231301	41231382	14884733	0	+	0.716049	(0.59,1]	chr15	1169186	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CHP1	ENSG00000187446.12	ENST00000558351.5:ENST00000560411.5:ENST00000560784.5:ENST00000392151.6:ENST00000561280.5:ENST00000334660.10:ENST00000560397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	108	2	2.09558	2.72085	3.34612	0.00272994	2.60979e-4	0.0237575	0.0042461
chr19	49497657	49497719	17370801	0	+	0.532258	(0.53,0.59]	chr19	1443154	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS11	ENSG00000142534.7	ENST00000600027.5:ENST00000599167.5:ENST00000602252.5:ENST00000596873.1:ENST00000270625.7:ENST00000594493.1:ENST00000601216.1:ENST00000599561.1:ENST00000601306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	1.96733	2.7207600000000003	3.47419	0.022694	8.75273e-4	0.105117	0.0106963
chr5	95783796	95783879	6108390	0	+	0.53012	(0.53,0.59]	chr5	478257	1	CDS	CDS:EXON_MRNA	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1:ENST00000507186.1:ENST00000511558.1:ENST00000503737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	1.96733	2.7207600000000003	3.47419	0.022694	8.75273e-4	0.105117	0.0106963
chr11	65352432	65352529	11984146	0	+	0.536082	(0.53,0.59]	chr11	920300	8	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.22207	2.72074	3.21941	0.00910511	0.00266171	0.0576716	0.0240332
chr16	70556957	70557029	15730011	0	+	0.541667	(0.53,0.59]	chr16	1252969	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000567250.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.22207	2.72074	3.21941	0.00910511	0.00266171	0.0576716	0.0240332
chrX	71239722	71239821	19106930	0	-	0.434343	(0.42,0.455]	chrX	1625381	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.68905	2.720675	2.7523	0.0153283	0.00119301	0.0828908	0.0128249
chr1	224389534	224389634	1526434	0	-	0.39	(0.36,0.39]	chr1	152610	45	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2:ENST00000486652.5:ENST00000678555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	1.85489	2.72063	3.58637	0.0350721	5.84377e-4	0.141601	0.00793559
chr1	228098013	228098112	744033	0	+	0.616162	(0.59,1]	chr1	75099	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000478336.5:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	448	2	2.55918	2.7206099999999998	2.88204	5.73533e-5	2.86839e-6	0.00127171	9.70262e-5
chr1	29148313	29148409	914074	0	-	0.479167	(0.455,0.49]	chr1	95607	7	UTR3	UTR3:EXON_MRNA	SRSF4	ENSG00000116350.17	ENST00000373795.7:ENST00000634348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	44	2	2.4441	2.7204	2.9967	0.00650423	4.90243e-4	0.0454205	0.0064018
chr1	30931789	30931883	916272	0	-	0.489362	(0.455,0.49]	chr1	95957	4	UTR3	UTR3:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	1.94735	2.720205	3.49306	0.00680997	6.07633e-5	0.0465162	0.00121305
chr7	151081648	151081737	9129254	0	-	0.696629	(0.59,1]	chr7	697677	1	CDS	CDS:EXON_MRNA	TMUB1	ENSG00000164897.14	ENST00000297533.9:ENST00000392818.7:ENST00000462940.1:ENST00000653405.1:ENST00000482202.5:ENST00000476627.5	protein_coding	protein_coding	protein_coding	protein_coding	3	45	2	2.32384	2.720155	3.11647	0.0157639	0.00535979	0.0851539	0.0406564
chr11	126266842	126266922	12645186	0	-	0.525	(0.49,0.53]	chr11	981856	2	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.70501	2.719975	3.73494	0.0189345	0.017267	0.0934721	0.091184
chr10	73743089	73743184	11574775	0	-	0.484211	(0.455,0.49]	chr10	881427	2	EXON_MRNA	EXON_MRNA	RP11-574K11.24	ENSG00000279088.1	ENST00000625041.1	TEC	TEC	TEC	TEC	7	48	2	2.69169	2.7198700000000002	2.74805	0.00126948	3.3051e-4	0.0139061	0.00470169
chr2	28783906	28783978	1702733	0	+	0.458333	(0.455,0.49]	chr2	167022	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000455580.5:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.30139	2.71963	3.13787	0.0530131	4.66183e-4	0.195536	0.00616585
chr12	110429459	110429559	13537378	0	-	0.66	(0.59,1]	chr12	1064862	259	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	27	360	2	2.5744	2.719545	2.86469	3.73038e-5	1.20087e-5	8.09367e-4	3.52389e-4
chr1	161210303	161210389	499153	0	+	0.418605	(0.39,0.42]	chr1	54026	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	38	2	2.02663	2.719515	3.4124	0.0130764	9.95835e-5	0.0729985	0.00180006
chr2	96186138	96186236	2789822	0	-	0.316327	(0.29,0.33]	chr2	248609	14	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	39	2	1.66337	2.719455	3.77554	0.0137224	1.78847e-5	0.0753413	4.90113e-4
chr6	57147749	57147843	7191380	0	+	0.382979	(0.36,0.39]	chr6	556079	8	CDS	CDS:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000444273.6:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.6711	2.71944	2.76778	0.00434596	0.00365703	0.0335517	0.0307238
chr2	68175567	68175663	1869182	0	+	0.385417	(0.36,0.39]	chr2	176648	9	UTR3	UTR3:EXON_MRNA	PNO1	ENSG00000115946.8	ENST00000263657.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.1437	2.71922	3.29474	0.0340515	0.00194306	0.141465	0.0185233
chr2	117830918	117831015	2021875	0	+	0.360825	(0.36,0.39]	chr2	191116	3	UTR3	UTR3:EXON_MRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000476149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.1437	2.71922	3.29474	0.0340515	0.00194306	0.141465	0.0185233
chr21	44866740	44866839	18277590	0	-	0.373737	(0.36,0.39]	chr21	1550285	7	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.1437	2.71922	3.29474	0.0340515	0.00194306	0.141465	0.0185233
chr1	166858199	166858281	1344434	0	-	0.585366	(0.53,0.59]	chr1	137741	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TADA1	ENSG00000152382.6	ENST00000367874.5:ENST00000467021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.64837	2.7190849999999998	2.7898	0.0199467	0.0128364	0.0984041	0.0719798
chr20	57523839	57523927	18021820	0	-	0.579545	(0.53,0.59]	chr20	1527445	3	CDS	CDS:EXON_MRNA:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6:ENST00000502686.6:ENST00000433949.7:ENST00000426658.6:ENST00000422109.6:ENST00000608440.5:ENST00000422869.6:ENST00000608425.5:ENST00000539382.5:ENST00000608903.5:ENST00000432255.6:ENST00000608858.5:ENST00000608108.1:ENST00000608720.5:ENST00000607923.5:ENST00000481655.2:ENST00000608158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.64837	2.7190849999999998	2.7898	0.0199467	0.0128364	0.0984041	0.0719798
chr17	42405302	42405388	16548239	0	-	0.581395	(0.53,0.59]	chr17	1357381	7	CDS	CDS:EXON_MRNA	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.65894	2.719075	2.77921	0.0193255	0.0132865	0.0943643	0.0740932
chr4	154545840	154545923	5744338	0	-	0.554217	(0.53,0.59]	chr4	453867	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PLRG1	ENSG00000171566.12	ENST00000499023.7:ENST00000302078.9:ENST00000506192.5:ENST00000506918.1:ENST00000504341.1:ENST00000512719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.65894	2.719075	2.77921	0.0193255	0.0132865	0.0943643	0.0740932
chr6	10724613	10724633	7048555	0	+	0.55	(0.53,0.59]	chr6	539744	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5:ENST00000495549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.65894	2.719075	2.77921	0.0193255	0.0132865	0.0943643	0.0740932
chr8	28770981	28771080	9775868	0	-	0.545455	(0.53,0.59]	chr8	739059	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000517383.1:ENST00000522363.5:ENST00000520316.5:ENST00000519578.1:ENST00000520005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.65894	2.719075	2.77921	0.0193255	0.0132865	0.0943643	0.0740932
chrX	110177393	110177492	18820980	0	+	0.545455	(0.53,0.59]	chrX	1603939	41	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	36	2	2.71318	2.71898	2.72478	0.00340745	0.00324675	0.0283456	0.0282494
chr22	35416725	35416814	18359556	0	+	0.494382	(0.49,0.53]	chr22	1561041	2	CDS	CDS:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.48488	2.718895	2.95291	0.032052	0.00119735	0.133433	0.0134293
chr5	118974585	118974670	6174266	0	+	0.317647	(0.29,0.33]	chr5	481547	1	EXON_SMALL	EXON_SMALL:PRIMIRNA	MIR1244-2	ENSG00000283498.1	ENST00000636449.1	miRNA	miRNA	miRNA	miRNA:primary_miRNA	14	73	2	1.99381	2.718765	3.44372	0.00468649	3.29219e-7	0.0362871	1.55344e-5
chr12	31252337	31252423	13279777	0	-	0.616279	(0.59,1]	chr12	1041226	5	EXON_PSEUDO	EXON_PSEUDO	RP11-627K11.1	ENSG00000243517.1	ENST00000495623.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	87	2	2.63214	2.718655	2.80517	0.005622	3.58391e-4	0.0421873	0.00501992
chr10	79314158	79314258	11148590	0	+	0.6	(0.59,1]	chr10	847411	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	2.66274	2.71846	2.77418	0.0160729	0.00482151	0.0860154	0.0365653
chr1	153662495	153662556	1298403	0	-	0.393443	(0.39,0.42]	chr1	130374	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000480213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	72	2	2.38186	2.71835	3.05484	0.00601449	3.99764e-6	0.0434483	1.28782e-4
chr1	204410736	204410832	1457485	0	-	0.479167	(0.455,0.49]	chr1	146827	14	CDS	CDS:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.58479	2.718255	2.85172	0.010864	0.00200187	0.0643837	0.0189555
chr11	59638290	59638389	12401038	0	-	0.464646	(0.455,0.49]	chr11	959467	17	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.58479	2.718255	2.85172	0.010864	0.00200187	0.0643837	0.0189555
chr12	24815212	24815312	13255708	0	-	0.29	[0,0.29]	chr12	1038842	53	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.44493	2.718185	2.99144	0.00386792	0.00112713	0.0322452	0.0122637
chr8	98045038	98045088	9962858	0	-	0.44	(0.42,0.455]	chr8	751717	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RPL30	ENSG00000156482.11	ENST00000518164.5:ENST00000518850.5:ENST00000287038.8:ENST00000396070.6:ENST00000521291.5:ENST00000523172.5:ENST00000521726.1:ENST00000517489.1:ENST00000520998.1:ENST00000521112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	264	2	2.45612	2.7180299999999997	2.97994	2.91404e-5	5.21455e-8	7.26551e-4	3.20011e-6
chr11	61303864	61303949	12403927	0	-	0.552941	(0.53,0.59]	chr11	960187	1	CDS	CDS:UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	1.98183	2.7179349999999998	3.45404	0.00781631	1.27275e-5	0.0519574	3.35074e-4
chr3	23887632	23887699	3358477	0	+	0.41791	(0.39,0.42]	chr3	294101	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1:ENST00000493707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	26	2	2.3855	2.7179	3.0503	0.00570576	0.0049615	0.0424438	0.0368419
chr6	30724397	30724492	7112222	0	+	0.547368	(0.53,0.59]	chr6	545067	1	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	74	566	2	2.60174	2.7178649999999998	2.83399	1.02544e-6	1.03766e-7	4.51911e-5	5.75457e-6
chr12	21646957	21647016	13236726	0	-	0.38983	(0.36,0.39]	chr12	1037974	2	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000470280.1:ENST00000450584.5:ENST00000539782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	48	2	2.22655	2.7177100000000003	3.20887	0.00169792	8.51229e-5	0.0166327	0.00174655
chr6	31830065	31830159	7116708	0	+	0.329787	(0.29,0.33]	chr6	546211	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	10	52	2	2.50855	2.7176150000000003	2.92668	0.0023535	2.22189e-5	0.0222204	5.29385e-4
chr20	38129143	38129240	17962922	0	-	0.463918	(0.455,0.49]	chr20	1522305	19	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	2.07467	2.7175849999999997	3.3605	0.00905778	0.00147278	0.0574177	0.0157578
chr1	156009342	156009440	1313062	0	-	0.571429	(0.53,0.59]	chr1	133080	4	UTR3	UTR3:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5:ENST00000473699.5:ENST00000480567.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	111	2	2.06659	2.71749	3.36839	0.00244421	7.94979e-7	0.0229472	3.28891e-5
chr7	102196921	102197017	8437034	0	+	0.458333	(0.455,0.49]	chr7	644376	4	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.12994	2.7168900000000002	3.30384	0.0304832	0.00184955	0.130204	0.0178046
chrX	53403776	53403834	19076874	0	-	0.465517	(0.455,0.49]	chrX	1622538	1	CDS	CDS:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1:ENST00000674590.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.12994	2.7168900000000002	3.30384	0.0304832	0.00184955	0.130204	0.0178046
chr8	38262539	38262638	9292768	0	+	0.363636	(0.36,0.39]	chr8	710795	21	UTR3	UTR3:EXON_MRNA:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000517385.5:ENST00000526071.1:ENST00000529872.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	36	2	1.94692	2.716805	3.48669	0.0192083	6.40815e-5	0.0943643	0.00125657
chr9	121180208	121180307	10835877	0	-	0.373737	(0.36,0.39]	chr9	820919	22	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	1.94692	2.716805	3.48669	0.0192083	6.40815e-5	0.0943643	0.00125657
chr1	3898475	3898575	838362	0	-	0.41	(0.39,0.42]	chr1	84339	19	INTRON	INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.38313	2.7167149999999998	3.0503	0.0128066	0.00570576	0.0725185	0.0424438
chr7	12688515	12688595	8136650	0	+	0.4125	(0.39,0.42]	chr7	621814	3	CDS	CDS:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396662.5:ENST00000356797.7:ENST00000396664.2:ENST00000396663.2:ENST00000651779.1:ENST00000404894.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.38313	2.7167149999999998	3.0503	0.0128066	0.00570576	0.0725185	0.0424438
chr1	31907197	31907295	921172	0	-	0.469388	(0.455,0.49]	chr1	96904	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	28	2	2.43664	2.71667	2.9967	0.00650423	0.00394058	0.0454205	0.0315828
chr16	23680167	23680252	15595235	0	+	0.470588	(0.455,0.49]	chr16	1236708	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000570220.5:ENST00000300093.9:ENST00000564202.1:ENST00000567897.6:ENST00000568568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	28	2	2.43664	2.71667	2.9967	0.00650423	0.00394058	0.0454205	0.0315828
chr22	30978313	30978412	18344870	0	+	0.333333	(0.33,0.36]	chr22	1559168	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	2.27335	2.716555	3.15976	0.00837768	0.00437542	0.0541213	0.0340502
chr6	135198982	135199050	7414892	0	+	0.352941	(0.33,0.36]	chr6	568314	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	2.27335	2.716555	3.15976	0.00837768	0.00437542	0.0541213	0.0340502
chr1	182866514	182866585	594963	0	+	0.43662	(0.42,0.455]	chr1	61602	2	CDS	CDS:EXON_MRNA	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.70611	2.7164849999999996	2.72686	0.00397496	0.00330337	0.0322851	0.027613
chr19	41332200	41332281	17568502	0	-	0.604938	(0.59,1]	chr19	1476885	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TGFB1	ENSG00000105329.11	ENST00000598758.5:ENST00000221930.6:ENST00000600196.2:ENST00000677934.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	74	2	2.06696	2.71643	3.3659	0.0170848	2.1483e-4	0.0897702	0.00332687
chr20	41124090	41124189	17790177	0	+	0.30303	(0.29,0.33]	chr20	1503539	9	UTR3	UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	55	2	2.05621	2.716305	3.3764	0.00156545	1.02344e-5	0.0156889	3.0736e-4
chr5	127533622	127533704	6204841	0	+	0.439024	(0.42,0.455]	chr5	483439	1	CDS	CDS:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000442138.6:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.24157	2.716175	3.19078	0.0087798	0.00310864	0.0562439	0.0274272
chr12	6922899	6922999	12715497	0	+	0.58	(0.53,0.59]	chr12	987278	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000538763.5:ENST00000545045.6:ENST00000535366.5:ENST00000534977.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	48	2	2.27113	2.716115	3.1611	0.0178853	8.49658e-5	0.0918323	0.00159594
chr10	97225627	97225726	11644412	0	-	0.262626	[0,0.29]	chr10	887008	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGAP19-SLIT1:ARHGAP19	ENSG00000269891.2:ENSG00000213390.11	ENST00000479633.2:ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1:ENST00000371027.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	29	2	2.50979	2.7159950000000004	2.9222	0.00608277	4.0458e-4	0.0438976	0.00550337
chr6	160075921	160075996	7528659	0	+	0.493333	(0.49,0.53]	chr6	574902	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	1.99044	2.71597	3.4415	0.0435903	9.98297e-4	0.170594	0.0111246
chr17	48071335	48071434	16574421	0	-	0.525253	(0.49,0.53]	chr17	1361607	14	UTR3	UTR3:EXON_MRNA	CBX1	ENSG00000108468.15	ENST00000393408.7:ENST00000225603.9	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.69633	2.715635	3.73494	0.0531914	0.0189345	0.184818	0.0934721
chr7	1439676	1439773	8645282	0	-	0.463918	(0.455,0.49]	chr7	660635	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000487156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	1.8708	2.715585	3.56037	0.0324007	5.72551e-4	0.134751	0.0078026
chr17	81510789	81510833	16707868	0	-	0.613636	(0.59,1]	chr17	1377331	1	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	151	2	2.68174	2.715535	2.74933	2.69919e-4	2.04667e-4	0.00435156	0.0032118
chr22	22550960	22551058	18445077	0	-	0.653061	(0.59,1]	chr22	1572815	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000438888.5:ENST00000420709.5:ENST00000476336.5:ENST00000485532.1:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	269	2	2.0318	2.7154249999999998	3.39905	0.00154474	1.1454e-6	0.0156639	4.93589e-5
chr1	15935169	15935268	71888	0	+	0.656566	(0.59,1]	chr1	8104	72	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	46	2	1.96394	2.7152700000000003	3.4666	0.0453144	0.00133574	0.174798	0.0139317
chr11	61967494	61967564	12406762	0	-	0.742857	(0.59,1]	chr11	960811	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	226	3111	2	2.42786	2.715255	3.00265	1.38834e-5	1.17549e-7	3.94563e-4	6.42099e-6
chr6	20493514	20493614	7075602	0	+	0.21	[0,0.29]	chr6	541472	32	UTR3	UTR3:EXON_MRNA	E2F3	ENSG00000112242.15	ENST00000346618.8:ENST00000613242.4:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.16074	2.7151750000000003	3.26961	0.0222978	0.00229774	0.105845	0.0210664
chr13	95194886	95194937	14111137	0	-	0.490196	(0.49,0.53]	chr13	1104442	2	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	36	2	1.99044	2.715175	3.43991	0.0435903	8.40266e-5	0.170594	0.00158427
chr3	184324200	184324273	3949233	0	+	0.465753	(0.455,0.49]	chr3	332440	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.50904	2.715015	2.92099	0.0310515	0.00138399	0.131262	0.0143168
chr2	240021357	240021412	3245995	0	-	0.490909	(0.49,0.53]	chr2	286084	2	CDS	CDS:UTR3:EXON_MRNA	NDUFA10	ENSG00000130414.13	ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1:ENST00000407129.3:ENST00000497536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.56183	2.7149650000000003	2.8681	0.0261296	0.00175299	0.118976	0.0171299
chr2	43223934	43224030	2618843	0	-	0.354167	(0.33,0.36]	chr2	235738	17	UTR3	UTR3:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	14	68	2	2.33778	2.7148149999999998	3.09185	3.97938e-4	9.32807e-6	0.00546201	2.86611e-4
chrX	41344238	41344255	18669450	0	+	0.352941	(0.33,0.36]	chrX	1592213	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.64851	2.71473	2.78095	0.00492353	0.00388614	0.0366648	0.0322851
chr14	100334479	100334578	14788500	0	-	0.434343	(0.42,0.455]	chr14	1158691	8	UTR3	UTR3:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	1.9028	2.714695	3.52659	0.0112346	6.87022e-4	0.0665375	0.00876781
chr19	12800915	12800992	17470989	0	-	0.623377	(0.59,1]	chr19	1463182	1	CDS	CDS:EXON_MRNA:INTRON	HOOK2:PRDX2	ENSG00000095066.12:ENSG00000167815.12	ENST00000589765.1:ENST00000334482.9:ENST00000301522.3:ENST00000466174.5:ENST00000477555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	85	2	1.91544	2.714635	3.51383	0.0165875	1.11838e-4	0.0878414	0.00213742
chr6	26198783	26198850	7647221	0	-	0.402985	(0.39,0.42]	chr6	582551	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP1-34B20.21:H2AC7	ENSG00000282988.2:ENSG00000196866.3	ENST00000635641.1:ENST00000650491.1:ENST00000635200.1:ENST00000341023.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	35	2	2.01677	2.714585	3.4124	0.0235818	9.95835e-5	0.111323	0.00180006
chr7	131488222	131488321	8535485	0	+	0.323232	(0.29,0.33]	chr7	651710	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000352689.11:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	40	2	1.91015	2.713955	3.51776	0.00447087	9.94392e-5	0.034213	0.00195926
chr1	110952146	110952242	1223729	0	-	0.40625	(0.39,0.42]	chr1	119615	10	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000494675.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.37759	2.713945	3.0503	0.0428865	0.00570576	0.161091	0.0424438
chr22	43167314	43167413	18527856	0	-	0.565657	(0.53,0.59]	chr22	1582334	8	UTR3	UTR3:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	2.30988	2.713835	3.11779	0.00643853	5.11883e-4	0.0452349	0.00664583
chr3	155987885	155987982	3824730	0	+	0.463918	(0.455,0.49]	chr3	326240	7	EXON_PSEUDO	EXON_PSEUDO	SETP14	ENSG00000240489.1	ENST00000497538.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	37	2	2.52734	2.713545	2.89975	0.00792433	3.94125e-4	0.0523592	0.00541075
chr19	19004550	19004646	17501736	0	-	0.354167	(0.33,0.36]	chr19	1468589	5	CDS	CDS:UTR3:EXON_MRNA	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	2.26699	2.713375	3.15976	0.00437542	0.00427416	0.0340502	0.0332637
chr1	51823724	51823786	1016652	0	-	0.387097	(0.36,0.39]	chr1	105302	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000473805.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	37	2	2.42114	2.7133599999999998	3.00558	0.00564641	2.21724e-4	0.0422191	0.00341828
chr3	152462583	152462683	3818504	0	+	0.34	(0.33,0.36]	chr3	325707	3	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	68	2	2.55863	2.71286	2.86709	3.9745e-4	1.71434e-5	0.00588767	4.3231e-4
chr12	56611772	56611866	13351838	0	-	0.510638	(0.49,0.53]	chr12	1051683	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1:ENST00000549327.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	25	2	2.70307	2.712795	2.72252	0.0161474	0.00363585	0.0860154	0.0298137
chr1	65226276	65226375	249719	0	+	0.424242	(0.42,0.455]	chr1	28617	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5:ENST00000479060.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.36247	2.7127	3.06293	0.0462889	0.00492128	0.176878	0.0366648
chr1	74719208	74719290	1103630	0	-	0.426829	(0.42,0.455]	chr1	111275	1	CDS	CDS:EXON_MRNA:INTRON	CRYZ	ENSG00000116791.14	ENST00000370872.7:ENST00000340866.10:ENST00000417775.5:ENST00000370871.7:ENST00000370870.5:ENST00000441120.1	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.36247	2.7127	3.06293	0.0462889	0.00492128	0.176878	0.0366648
chr12	6588297	6588359	13187268	0	-	0.451613	(0.42,0.455]	chr12	1032322	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000540960.2:ENST00000646070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.36247	2.7127	3.06293	0.0462889	0.00492128	0.176878	0.0366648
chr14	34802920	34802988	14579120	0	-	0.352941	(0.33,0.36]	chr14	1142266	2	CDS	CDS:EXON_MRNA	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.28792	2.7127	3.13748	0.0239159	0.00379835	0.112531	0.0307587
chr18	2762170	2762236	16727583	0	+	0.454545	(0.42,0.455]	chr18	1379874	2	CDS	CDS:UTR3:EXON_MRNA	SMCHD1	ENSG00000101596.16	ENST00000320876.11:ENST00000577880.5:ENST00000584897.5:ENST00000645355.1:ENST00000583344.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.36247	2.7127	3.06293	0.0462889	0.00492128	0.176878	0.0366648
chr5	137752348	137752448	6858083	0	-	0.36	(0.33,0.36]	chr5	524499	68	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.28792	2.7127	3.13748	0.0239159	0.00379835	0.112531	0.0307587
chr8	20220262	20220302	9220099	0	+	0.425	(0.42,0.455]	chr8	704733	1	CDS	CDS:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.36247	2.7127	3.06293	0.0462889	0.00492128	0.176878	0.0366648
chr6	31817390	31817486	7116677	0	+	0.572917	(0.53,0.59]	chr6	546204	17	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	15	116	2	2.45612	2.7126799999999998	2.96924	1.26641e-4	1.63746e-5	0.00219694	4.55421e-4
chr7	16600072	16600170	8702996	0	-	0.418367	(0.39,0.42]	chr7	664638	4	UTR3	UTR3:EXON_MRNA	ANKMY2	ENSG00000106524.9	ENST00000306999.7:ENST00000447802.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.70591	2.712515	2.71912	0.0185716	0.0163125	0.0932453	0.0866586
chr16	2766191	2766290	15494937	0	+	0.565657	(0.53,0.59]	chr16	1227802	48	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	2.43965	2.7124800000000002	2.98531	0.00168039	7.82534e-5	0.0175001	0.00148756
chrM	8072	8169	19377218	0	+	0.505155	(0.49,0.53]	chrM	1649808	5	CDS	CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	115	731	2	2.36901	2.71237	3.05573	2.03312e-6	4.12343e-9	7.25571e-5	3.92738e-7
chr16	68123026	68123121	15714223	0	+	0.442105	(0.42,0.455]	chr16	1250981	12	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2:ENST00000565750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	67	2	2.39306	2.7122650000000004	3.03147	2.67192e-4	2.02875e-4	0.0039871	0.0034429
chr7	105117056	105117153	8970786	0	-	0.257732	[0,0.29]	chr7	686639	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SRPK2	ENSG00000135250.17	ENST00000493638.1:ENST00000465072.5:ENST00000393651.8:ENST00000357311.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.15488	2.7122450000000002	3.26961	0.0436536	0.00229774	0.170594	0.0210664
chr15	90909415	90909504	15103634	0	+	0.52809	(0.49,0.53]	chr15	1188715	2	CDS	CDS:EXON_MRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000557865.5:ENST00000560616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	64	2	2.3044	2.712035	3.11967	0.00696379	1.16146e-5	0.0474632	3.1065e-4
chr19	18850074	18850158	17260597	0	+	0.559524	(0.53,0.59]	chr19	1425767	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5:ENST00000594504.5:ENST00000600868.5:ENST00000600012.5:ENST00000598209.5:ENST00000600310.5:ENST00000598471.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	28	2	2.64475	2.71198	2.77921	0.0132865	0.00453071	0.0740932	0.0351187
chr5	118974670	118974770	6174267	0	+	0.32	(0.29,0.33]	chr5	481548	1	PRIMIRNA	PRIMIRNA	MIR1244-2	ENSG00000283498.1	ENST00000636449.1	miRNA	primary_miRNA	miRNA	primary_miRNA	5	26	2	2.50329	2.71197	2.92065	0.0117842	0.00142661	0.0686664	0.0146595
chr1	222630291	222630389	723968	0	+	0.530612	(0.53,0.59]	chr1	72962	29	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.0404	2.711935	3.38347	0.0362529	0.00132446	0.148525	0.0138834
chrX	53550996	53551092	19077358	0	-	0.5625	(0.53,0.59]	chrX	1622722	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.0404	2.711935	3.38347	0.0362529	0.00132446	0.148525	0.0138834
chr8	47857227	47857299	9816347	0	-	0.555556	(0.53,0.59]	chr8	742665	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	2.62309	2.7118450000000003	2.8006	0.00233666	0.00065129300000000005	0.0221314	0.00805846
chr4	46724118	46724215	5405886	0	-	0.43299	(0.42,0.455]	chr4	432788	4	EXON_PSEUDO	EXON_PSEUDO	RAC1P2	ENSG00000249936.3	ENST00000511164.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	42	2	2.70611	2.711735	2.71736	0.00397496	3.91972e-4	0.0322851	0.00539186
chr19	40458207	40458291	17566590	0	-	0.678571	(0.59,1]	chr19	1476401	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	100	2	2.65415	2.711675	2.7692	0.00171847	4.70656e-4	0.0168227	0.00665678
chr21	44806705	44806804	18277277	0	-	0.343434	(0.33,0.36]	chr21	1550219	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	2.17058	2.71165	3.25272	0.01664	2.63256e-4	0.0878065	0.00393206
chr19	38706043	38706131	17323504	0	+	0.534091	(0.53,0.59]	chr19	1434288	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	51	2	2.57867	2.7116249999999997	2.84458	0.00198261	5.21436e-4	0.0195088	0.00674101
chr5	177304699	177304774	6406811	0	+	0.573333	(0.53,0.59]	chr5	498049	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRELID1	ENSG00000169230.10	ENST00000303204.9:ENST00000511309.5:ENST00000510797.1:ENST00000504594.5:ENST00000503216.5:ENST00000502670.1:ENST00000503853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	28	2	2.0289	2.7115299999999998	3.39416	0.0373899	0.00126006	0.146698	0.013837
chr1	40070158	40070220	151957	0	+	0.435484	(0.42,0.455]	chr1	19032	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000372798.5:ENST00000340450.7:ENST00000479759.5:ENST00000461993.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	48	2	1.99701	2.711525	3.42604	0.0235036	1.46189e-5	0.111072	3.76794e-4
chr6	34280774	34280874	7672409	0	-	0.54	(0.53,0.59]	chr6	588026	12	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.63316	2.71148	2.7898	0.0128364	0.00474401	0.0719798	0.0361423
chr9	133155173	133155273	10879537	0	-	0.57	(0.53,0.59]	chr9	825598	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-326L24.9:GBGT1	ENSG00000285245.1:ENSG00000148288.13	ENST00000647146.1:ENST00000372040.9:ENST00000372043.7:ENST00000470431.5:ENST00000472281.5:ENST00000540636.6:ENST00000646215.1:ENST00000372038.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	28	2	2.63316	2.71148	2.7898	0.0128364	0.00474401	0.0719798	0.0361423
chrX	49560875	49560949	18694972	0	+	0.567568	(0.53,0.59]	chrX	1594962	1	UTR5	UTR5:EXON_MRNA:INTRON	GAGE12F	ENSG00000236362.8	ENST00000639028.1:ENST00000440137.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.63316	2.71148	2.7898	0.0128364	0.00474401	0.0719798	0.0361423
chr2	171979304	171979363	2208683	0	+	0.355932	(0.33,0.36]	chr2	202162	2	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	2.33322	2.7114149999999997	3.08961	0.00451613	1.38453e-4	0.0350603	0.00234747
chr17	81602097	81602194	16708647	0	-	0.42268	(0.42,0.455]	chr17	1377507	13	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	1.71996	2.7113449999999997	3.70273	0.0542346	0.0215502	0.199653	0.102904
chr7	158828209	158828303	9160273	0	-	0.425532	(0.42,0.455]	chr7	699812	7	INTRON	INTRON	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	1.71996	2.7113449999999997	3.70273	0.0542346	0.0215502	0.199653	0.102904
chr1	110344445	110344544	404036	0	+	0.383838	(0.36,0.39]	chr1	39594	18	INTRON	INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	2.47194	2.7112499999999997	2.95056	0.00204665	9.87614e-5	0.0200766	0.00178696
chr1	634727	634827	823378	0	-	0.5	(0.49,0.53]	chr1	81486	17	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	19	2	2.38097	2.71102	3.04107	0.0425419	0.00533879	0.167547	0.0392268
chr1	46344954	46345049	178725	0	+	0.526316	(0.49,0.53]	chr1	23196	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NSUN4	ENSG00000117481.11	ENST00000307089.7:ENST00000486270.5:ENST00000474844.6:ENST00000469918.5:ENST00000537428.2:ENST00000498008.5:ENST00000495427.1:ENST00000475281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.38097	2.71102	3.04107	0.0425419	0.00533879	0.167547	0.0392268
chr1	52397773	52397863	1018948	0	-	0.511111	(0.49,0.53]	chr1	105632	2	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.38097	2.71102	3.04107	0.0425419	0.00533879	0.167547	0.0392268
chr19	3576552	3576625	17202806	0	+	0.506849	(0.49,0.53]	chr19	1413885	1	CDS	CDS:UTR3:EXON_MRNA	HMG20B	ENSG00000064961.19	ENST00000416526.5:ENST00000333651.11:ENST00000488973.6:ENST00000435022.5:ENST00000262949.7:ENST00000483417.1:ENST00000487894.5:ENST00000464304.1:ENST00000493191.1:ENST00000585900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.38097	2.71102	3.04107	0.0425419	0.00533879	0.167547	0.0392268
chr1	71064280	71064379	1086844	0	-	0.30303	(0.29,0.33]	chr1	110807	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	2.62025	2.7109300000000003	2.80161	0.00573581	0.00415667	0.0417422	0.0325842
chr1	23055068	23055161	97489	0	+	0.430108	(0.42,0.455]	chr1	11229	1	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000481879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	48	2	2.2473	2.710895	3.17449	0.0048106	7.7054e-5	0.0371037	0.00146588
chr8	41654665	41654761	9806267	0	-	0.34375	(0.33,0.36]	chr8	741510	16	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.16995	2.71089	3.25183	0.0124739	3.87102e-4	0.0713206	0.00578322
chr19	16552889	16552988	17491586	0	-	0.545455	(0.53,0.59]	chr19	1466498	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000652421.1:ENST00000409648.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	1.87133	2.71067	3.55001	0.0308819	6.11776e-4	0.130016	0.00818575
chr1	114707552	114707652	1239481	0	-	0.3	(0.29,0.33]	chr1	121309	32	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	11	50	2	2.25163	2.7106250000000003	3.16962	0.00176075	2.42328e-5	0.0180053	5.68668e-4
chr16	70268270	70268368	15997047	0	-	0.561224	(0.53,0.59]	chr16	1284652	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	85	2	2.43965	2.710605	2.98156	0.00168039	1.5098e-5	0.0175001	3.86032e-4
chr2	32464586	32464665	1713483	0	+	0.481013	(0.455,0.49]	chr2	168105	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.56938	2.71055	2.85172	0.010864	0.00635313	0.0643837	0.0449666
chr9	129827482	129827579	10867775	0	-	0.350515	(0.33,0.36]	chr9	824293	3	UTR3	UTR3:EXON_MRNA	C9orf78	ENSG00000136819.15	ENST00000372447.7	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.27335	2.710535	3.14772	0.00837768	6.79194e-4	0.0541213	0.00876781
chr22	22547974	22548066	18445044	0	-	0.445652	(0.42,0.455]	chr22	1572801	4	UTR3	UTR3:EXON_MRNA	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	164	2	2.34436	2.71044	3.07652	1.09384e-4	2.25284e-7	0.00210304	1.1217e-5
chr16	58709416	58709491	15967640	0	-	0.493333	(0.49,0.53]	chr16	1281411	1	CDS	CDS:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000494627.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	29	2	2.30189	2.710405	3.11892	0.00685554	0.00398244	0.0471063	0.0322851
chr12	113358795	113358890	13101429	0	+	0.694737	(0.59,1]	chr12	1022382	2	CDS	CDS:EXON_MRNA	PLBD2	ENSG00000151176.8	ENST00000545182.6:ENST00000280800.5:ENST00000548997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	34	2	2.42639	2.710385	2.99438	0.0409084	0.00776449	0.163285	0.050813
chr16	88805538	88805637	15807283	0	+	0.636364	(0.59,1]	chr16	1258116	2	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9:ENST00000562747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.42639	2.710385	2.99438	0.0409084	0.00776449	0.163285	0.050813
chrX	299096	299165	18549152	0	+	0.623188	(0.59,1]	chrX	1585411	1	CDS	CDS:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.42639	2.710385	2.99438	0.0409084	0.00776449	0.163285	0.050813
chrX	119468515	119468615	18841499	0	+	0.64	(0.59,1]	chrX	1605549	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	162	2	2.47307	2.71032	2.94757	4.62998e-4	8.06144e-5	0.00655735	0.00152571
chr5	140529321	140529416	6255129	0	+	0.473684	(0.455,0.49]	chr5	487634	13	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	36	2	2.63872	2.7103	2.78188	0.00510378	7.46087e-4	0.0390492	0.00892618
chr11	10807624	10807716	12272663	0	-	0.369565	(0.36,0.39]	chr11	949032	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000532082.6:ENST00000524932.6:ENST00000527419.6:ENST00000531507.5:ENST00000525972.5:ENST00000528562.6:ENST00000532570.6:ENST00000530211.6:ENST00000527526.6:ENST00000530702.2:ENST00000525995.1:ENST00000533485.1:ENST00000534246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.48922	2.71029	2.93136	0.0110399	0.00811967	0.0652374	0.0528637
chr16	11351566	11351663	15543391	0	+	0.381443	(0.36,0.39]	chr16	1231099	9	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.48922	2.71029	2.93136	0.0110399	0.00811967	0.0652374	0.0528637
chr20	57378012	57378099	17836856	0	+	0.37931	(0.36,0.39]	chr20	1508323	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RAE1	ENSG00000101146.13	ENST00000371242.6:ENST00000395841.7:ENST00000492498.5:ENST00000395840.6:ENST00000462438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.48922	2.71029	2.93136	0.0110399	0.00811967	0.0652374	0.0528637
chr3	44752840	44752940	4149087	0	-	0.39	(0.36,0.39]	chr3	346666	42	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.48922	2.71029	2.93136	0.0110399	0.00811967	0.0652374	0.0528637
chr5	175527607	175527704	6397800	0	+	0.360825	(0.36,0.39]	chr5	496826	10	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.48922	2.71029	2.93136	0.0110399	0.00811967	0.0652374	0.0528637
chr14	104769427	104769506	14798801	0	-	0.670886	(0.59,1]	chr14	1159939	2	UTR3	UTR3:EXON_MRNA	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000553506.5:ENST00000683722.1:ENST00000555528.5:ENST00000683058.1:ENST00000555458.5:ENST00000554826.2:ENST00000553797.2:ENST00000684058.1:ENST00000610370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.4994	2.710185	2.92097	0.0333573	0.0102634	0.137922	0.0628742
chr20	31665948	31666048	17939745	0	-	0.61	(0.59,1]	chr20	1519094	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	34	2	2.4994	2.710185	2.92097	0.0333573	0.0102634	0.137922	0.0628742
chr13	52024101	52024198	13746356	0	+	0.43299	(0.42,0.455]	chr13	1082765	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ALG11	ENSG00000253710.5	ENST00000649708.2:ENST00000521508.2:ENST00000681053.1:ENST00000681047.1:ENST00000679544.1:ENST00000649340.2:ENST00000680793.1:ENST00000523764.1:ENST00000680950.1:ENST00000679359.1:ENST00000681226.1:ENST00000681145.1:ENST00000650049.2:ENST00000679495.1:ENST00000649651.2:ENST00000519151.1:ENST00000680058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.50649	2.7101100000000002	2.91373	0.0302857	0.00892357	0.130016	0.0567495
chr16	23466294	23466393	15894366	0	-	0.424242	(0.42,0.455]	chr16	1272095	10	UTR3	UTR3:EXON_MRNA:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.50649	2.7101100000000002	2.91373	0.0302857	0.00892357	0.130016	0.0567495
chr17	31892259	31892323	16498713	0	-	0.4375	(0.42,0.455]	chr17	1349874	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP6	ENSG00000108651.10	ENST00000261708.9:ENST00000583408.5:ENST00000490218.6:ENST00000579878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	17	2	2.50649	2.7101100000000002	2.91373	0.0302857	0.00892357	0.130016	0.0567495
chr12	95861230	95861293	13026665	0	+	0.460317	(0.455,0.49]	chr12	1014075	2	CDS	CDS:EXON_MRNA	SNRPF	ENSG00000139343.10	ENST00000266735.9:ENST00000551316.1:ENST00000553192.5:ENST00000552085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	32	2	2.29155	2.70999	3.12843	0.00392855	0.00354718	0.0322851	0.0291792
chr2	26034708	26034735	1684689	0	+	0.333333	(0.33,0.36]	chr2	164706	1	CDS	CDS:EXON_MRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	2.57153	2.70997	2.84841	0.00330025	0.0020676	0.028478	0.0194849
chr1	44760347	44760415	173993	0	+	0.544118	(0.53,0.59]	chr1	22377	2	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	7	58	2	2.66813	2.709955	2.75178	8.47358e-4	5.09538e-4	0.0104407	0.00662599
chr17	49798318	49798382	16259880	0	+	0.453125	(0.42,0.455]	chr17	1318000	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000509124.5:ENST00000506533.5:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.66697	2.709635	2.7523	0.0190326	0.0153283	0.0958835	0.0828908
chr19	48922317	48922324	17367848	0	+	0.428571	(0.42,0.455]	chr19	1442158	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	17	2	2.66697	2.709635	2.7523	0.0190326	0.0153283	0.0958835	0.0828908
chr4	154539950	154540001	5744269	0	-	0.431373	(0.42,0.455]	chr4	453841	1	CDS	CDS:EXON_MRNA	PLRG1	ENSG00000171566.12	ENST00000499023.7:ENST00000506627.5:ENST00000302078.9:ENST00000507125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.66697	2.709635	2.7523	0.0190326	0.0153283	0.0958835	0.0828908
chr18	36142825	36142895	16825014	0	+	0.371429	(0.36,0.39]	chr18	1387585	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000545632.5:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000543439.5:ENST00000540323.5:ENST00000536373.5:ENST00000535093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	23	2	2.02118	2.709605	3.39803	0.0251625	0.00122711	0.117055	0.0130695
chr12	54238361	54238461	13342910	0	-	0.33	(0.29,0.33]	chr12	1049602	70	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	20	87	2	2.70926	2.709595	2.70993	2.07245e-5	1.65421e-5	5.00582e-4	4.5892e-4
chr15	83017775	83017872	15416736	0	-	0.329897	(0.29,0.33]	chr15	1219171	15	UTR3	UTR3:EXON_MRNA	BTBD1	ENSG00000064726.10	ENST00000261721.9	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.39609	2.70926	3.02243	0.0040115	9.33835e-4	0.0324137	0.0105624
chr16	18808783	18808881	15877214	0	-	0.326531	(0.29,0.33]	chr16	1269332	41	UTR3	UTR3:EXON_MRNA	SMG1	ENSG00000157106.17	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.39609	2.70926	3.02243	0.0040115	9.33835e-4	0.0324137	0.0105624
chr14	30878810	30878907	14201180	0	+	0.494845	(0.49,0.53]	chr14	1112880	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000553772.5:ENST00000475087.5:ENST00000556908.5:ENST00000555881.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000553833.5:ENST00000557065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.26641	2.7092400000000003	3.15207	0.0190546	0.00347189	0.093872	0.0286293
chr5	139307966	139308056	6248867	0	+	0.4	(0.39,0.42]	chr5	486959	6	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	109	2	2.61645	2.7090300000000003	2.80161	1.16014e-4	4.49463e-6	0.00221277	1.41922e-4
chr2	26285406	26285488	1686379	0	+	0.52439	(0.49,0.53]	chr2	164878	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	33	2	2.18239	2.708935	3.23548	0.024394	2.76544e-4	0.111797	0.00444204
chr11	117169372	117169470	12154359	0	+	0.387755	(0.36,0.39]	chr11	936189	18	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.63115	2.70887	2.78659	0.0245975	0.0132982	0.114841	0.0740932
chr2	135868610	135868693	2898202	0	-	0.361446	(0.36,0.39]	chr2	258558	1	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.63115	2.70887	2.78659	0.0245975	0.0132982	0.114841	0.0740932
chr6	33275605	33275700	7121546	0	+	0.473684	(0.455,0.49]	chr6	547503	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	74	2	2.3919	2.70885	3.0258	2.69792e-4	6.21073e-5	0.00402504	0.00134149
chr17	35608223	35608305	16206320	0	+	0.52439	(0.49,0.53]	chr17	1309035	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000593014.3:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	2.26641	2.708425	3.15044	0.0190546	4.32676e-4	0.093872	0.00583708
chr22	40777039	40777135	18517430	0	-	0.510417	(0.49,0.53]	chr22	1580869	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A17	ENSG00000100372.15	ENST00000544408.5:ENST00000435456.7:ENST00000491545.5:ENST00000263255.10:ENST00000402844.7:ENST00000447566.5:ENST00000420970.5:ENST00000430221.5:ENST00000427084.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	33	2	2.26641	2.708425	3.15044	0.0190546	4.32676e-4	0.093872	0.00583708
chr5	138393280	138393372	6244213	0	+	0.521739	(0.49,0.53]	chr5	486516	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.26641	2.708425	3.15044	0.0190546	4.32676e-4	0.093872	0.00583708
chr11	118401665	118401717	12157883	0	+	0.576923	(0.53,0.59]	chr11	936939	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RP11-770J1.8:ATP5MG	ENSG00000285827.1:ENSG00000167283.8	ENST00000649464.1:ENST00000300688.8:ENST00000648261.1:ENST00000529790.5:ENST00000529770.5:ENST00000533172.5:ENST00000524422.1:ENST00000529460.1:ENST00000534385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	101	2	2.5426	2.7083250000000003	2.87405	1.04763e-4	6.55401e-5	0.00187484	0.00139975
chrX	71240318	71240418	19106936	0	-	0.45	(0.42,0.455]	chrX	1625381	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.47379	2.7082100000000002	2.94263	0.00996858	0.00766873	0.0621728	0.0503696
chr1	150553524	150553624	468443	0	+	0.57	(0.53,0.59]	chr1	47450	2	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	12	111	2	1.64521	2.70819	3.77117	0.0162808	7.27533e-8	0.0866972	4.25093e-6
chr1	13279177	13279231	863314	0	-	0.462963	(0.455,0.49]	chr1	87787	2	EXON_SMALL	EXON_SMALL	RNU6-771P	ENSG00000207511.1	ENST00000384780.1	snRNA	snRNA	snRNA	snRNA	11	62	2	1.26154	2.708155	4.15477	0.0501877	5.75142e-7	0.188246	2.49635e-5
chr5	139683004	139683102	6250954	0	+	0.285714	[0,0.29]	chr5	487158	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1:ENST00000515038.1:ENST00000505812.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	36	2	1.78122	2.70805	3.63488	0.00539295	7.12896e-4	0.0396006	0.00897774
chr22	20122363	20122421	18297479	0	+	0.586207	(0.53,0.59]	chr22	1553204	1	CDS	CDS:UTR3:EXON_MRNA	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	82	2	2.4203	2.707915	2.99553	9.63254e-4	2.91769e-5	0.0107809	7.27239e-4
chr22	20950137	20950235	18300184	0	+	0.479592	(0.455,0.49]	chr22	1553647	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	120	2	2.19394	2.7079	3.22186	0.00207604	1.86837e-7	0.0203524	9.61133e-6
chr1	186333121	186333212	1411923	0	-	0.450549	(0.42,0.455]	chr1	142840	1	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	12	67	2	2.02818	2.70761	3.38704	0.00180502	1.91222e-5	0.0183913	4.67807e-4
chr15	80138010	80138106	15045408	0	+	0.322917	(0.29,0.33]	chr15	1183661	5	UTR3	UTR3:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000559157.5:ENST00000261749.11:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000616533.4:ENST00000557983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	2.0986	2.7075649999999998	3.31653	0.00919301	0.00261621	0.0581197	0.0238929
chr18	47853307	47853382	17109933	0	-	0.386667	(0.36,0.39]	chr18	1405083	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	SMAD2:MTCO2P2	ENSG00000175387.16:ENSG00000267541.1	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000586040.5:ENST00000591214.5:ENST00000591258.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	13	58	2	1.22474	2.7073099999999997	4.18988	0.0514	4.16692e-7	0.192748	1.89243e-5
chr6	109367297	109367395	7886652	0	-	0.295918	(0.29,0.33]	chr6	603688	9	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	50	2	1.71966	2.707165	3.69467	0.0158467	2.08145e-6	0.0853454	7.38737e-5
chr12	120575791	120575870	13117069	0	+	0.556962	(0.53,0.59]	chr12	1023939	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000413266.6:ENST00000545419.5:ENST00000535470.5:ENST00000538254.1:ENST00000543757.5:ENST00000542701.1:ENST00000544805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.50447	2.707125	2.90978	0.0301162	0.00857883	0.130016	0.0552386
chr3	152432852	152432920	3818196	0	+	0.544118	(0.53,0.59]	chr3	325660	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.50447	2.707125	2.90978	0.0301162	0.00857883	0.130016	0.0552386
chrX	153455616	153455691	19272827	0	-	0.56	(0.53,0.59]	chrX	1637173	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TREX2:HAUS7	ENSG00000183479.13:ENSG00000213397.12	ENST00000330912.7:ENST00000334497.7:ENST00000338525.7:ENST00000370232.4:ENST00000370211.10:ENST00000484394.5:ENST00000435662.1:ENST00000460898.5:ENST00000491286.5:ENST00000490165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.50447	2.707125	2.90978	0.0301162	0.00857883	0.130016	0.0552386
chr17	49678009	49678086	16582897	0	-	0.558442	(0.53,0.59]	chr17	1362543	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000514121.6:ENST00000509079.6:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.515	2.7070800000000004	2.89916	0.0292633	0.00890406	0.129773	0.0565003
chr19	40741008	40741098	17567321	0	-	0.588889	(0.53,0.59]	chr19	1476583	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000596940.5:ENST00000598485.6:ENST00000594163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	21	2	2.515	2.7070800000000004	2.89916	0.0292633	0.00890406	0.129773	0.0565003
chr3	48631879	48631950	4168925	0	-	0.535211	(0.53,0.59]	chr3	349686	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SLC26A6	ENSG00000225697.13	ENST00000420764.6:ENST00000395550.7:ENST00000337000.12:ENST00000307364.10:ENST00000383733.7:ENST00000489483.5:ENST00000358747.10:ENST00000480524.5:ENST00000455886.6:ENST00000421649.5:ENST00000444531.5:ENST00000414944.1:ENST00000482282.5:ENST00000431213.5:ENST00000431739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.515	2.7070800000000004	2.89916	0.0292633	0.00890406	0.129773	0.0565003
chr6	31700941	31701019	7661872	0	-	0.551282	(0.53,0.59]	chr6	585024	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	ABHD16A:XXbac-BPG32J3.20:MIR4646	ENSG00000204427.12:ENSG00000204422.7:ENSG00000266776.1	ENST00000395952.8:ENST00000492084.5:ENST00000461287.1:ENST00000495769.5:ENST00000440843.2:ENST00000498420.5:ENST00000477462.5:ENST00000482224.5:ENST00000468037.1:ENST00000580775.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	2	21	2	2.515	2.7070800000000004	2.89916	0.0292633	0.00890406	0.129773	0.0565003
chr6	125300598	125300659	7933176	0	-	0.540984	(0.53,0.59]	chr6	607286	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDDC2	ENSG00000111906.18	ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000608461.1:ENST00000608284.1:ENST00000609574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	21	2	2.515	2.7070800000000004	2.89916	0.0292633	0.00890406	0.129773	0.0565003
chr12	53042115	53042215	12884665	0	+	0.34	(0.33,0.36]	chr12	1001808	20	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.64851	2.7070049999999997	2.7655	0.0175892	0.00492353	0.0918323	0.0366648
chr1	168245834	168245933	526527	0	+	0.323232	(0.29,0.33]	chr1	56538	34	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.63813	2.7069900000000002	2.77585	0.0143131	0.00803229	0.0780602	0.0528968
chr1	180113799	180113897	582467	0	+	0.316327	(0.29,0.33]	chr1	60512	28	UTR3	UTR3:EXON_MRNA	CEP350	ENSG00000135837.16	ENST00000367607.8	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.63813	2.7069900000000002	2.77585	0.0143131	0.00803229	0.0780602	0.0528968
chr19	3976055	3976151	17430168	0	-	0.458333	(0.455,0.49]	chr19	1454680	1	UTR3	UTR3:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	79	486	2	2.69248	2.706935	2.72139	4.01671e-7	1.11486e-7	2.05181e-5	6.1404e-6
chr3	195784448	195784547	4661111	0	-	0.585859	(0.53,0.59]	chr3	385270	58	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	2.504	2.70689	2.90978	0.00857883	0.00279409	0.0552386	0.0241702
chr10	100373512	100373608	11219513	0	+	0.583333	(0.53,0.59]	chr10	853934	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	OLMALINC	ENSG00000235823.3	ENST00000668904.1:ENST00000641708.1:ENST00000659159.1:ENST00000654233.1:ENST00000641799.1:ENST00000641571.1:ENST00000608396.2:ENST00000641087.1:ENST00000663103.1:ENST00000657502.1:ENST00000666713.1:ENST00000661158.1:ENST00000664100.1:ENST00000657262.1:ENST00000666154.1:ENST00000666045.1:ENST00000662712.1:ENST00000654563.1:ENST00000662018.1:ENST00000667278.1:ENST00000658059.1:ENST00000659770.1:ENST00000656449.1:ENST00000665022.1:ENST00000659075.1:ENST00000661096.1:ENST00000668101.1:ENST00000668316.1:ENST00000664224.1:ENST00000665755.1	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	2.0404	2.70685	3.3733	0.0529193	0.0362529	0.18423900000000001	0.148525
chr11	64306491	64306580	11980367	0	+	0.561798	(0.53,0.59]	chr11	919199	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.0404	2.70685	3.3733	0.0529193	0.0362529	0.18423900000000001	0.148525
chr19	48455223	48455323	17366029	0	+	0.55	(0.53,0.59]	chr19	1441854	23	UTR3	UTR3:EXON_MRNA	GRWD1	ENSG00000105447.13	ENST00000253237.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.0404	2.70685	3.3733	0.0529193	0.0362529	0.18423900000000001	0.148525
chr20	32836771	32836841	17755737	0	+	0.514286	(0.49,0.53]	chr20	1498937	3	CDS	CDS:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.54558	2.70684	2.8681	0.0024326	0.00175299	0.0228485	0.0171299
chr7	56060873	56060940	8290525	0	+	0.492537	(0.49,0.53]	chr7	631504	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5:ENST00000466572.5:ENST00000462133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	37	2	2.46958	2.706805	2.94403	0.00344146	0.00122634	0.0292838	0.0130695
chr12	57748524	57748617	13357733	0	-	0.451613	(0.42,0.455]	chr12	1053001	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:PRIMIRNA	CDK4:MIR6759	ENSG00000135446.17:ENSG00000283621.1	ENST00000312990.10:ENST00000257904.11:ENST00000638110.1:ENST00000552713.5:ENST00000549606.5:ENST00000553237.5:ENST00000546489.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	4	27	2	1.86513	2.706755	3.54838	0.0357107	5.9986e-4	0.147298	0.0075062
chr15	41286010	41286100	14885274	0	+	0.344444	(0.33,0.36]	chr15	1169255	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000558945.5:ENST00000558457.5:ENST00000500949.6:ENST00000561275.5:ENST00000668616.1:ENST00000560706.5:ENST00000559368.5:ENST00000649527.1:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	5	24	2	1.8112	2.7065900000000003	3.60198	0.0257865	6.01238e-4	0.116737	0.00811676
chr4	102820650	102820749	5564174	0	-	0.343434	(0.33,0.36]	chr4	444389	78	INTRON	INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5:ENST00000508476.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	65	2	1.82006	2.706465	3.59287	0.0323353	2.49952e-7	0.135977	1.22874e-5
chr12	118150796	118150896	13568743	0	-	0.52	(0.49,0.53]	chr12	1067878	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000543709.5:ENST00000537305.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	24	2	2.18239	2.706225	3.23006	0.024394	0.00253719	0.111797	0.0233955
chr5	151799970	151800043	6299717	0	+	0.506849	(0.49,0.53]	chr5	491936	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678194.1:ENST00000679207.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1:ENST00000677241.1:ENST00000677608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.41364	2.7060649999999997	2.99849	0.0112538	0.00630123	0.0665375	0.0445415
chr2	106698483	106698579	2825365	0	-	0.447917	(0.42,0.455]	chr2	252231	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	50	2	2.2211	2.70594	3.19078	0.00310864	7.5665e-4	0.0274272	0.00904418
chr1	26781622	26781718	111029	0	+	0.489583	(0.455,0.49]	chr1	13356	10	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000324856.13:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	2.61558	2.705865	2.79615	0.00184897	2.49149e-4	0.0185736	0.00376163
chr1	21875628	21875687	891220	0	-	0.661017	(0.59,1]	chr1	92515	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	2.11074	2.7058400000000002	3.30094	0.0305	6.72298e-5	0.130204	0.00130881
chr10	70217811	70217871	11560767	0	-	0.416667	(0.39,0.42]	chr10	879663	1	CDS	CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	1.99911	2.705755	3.4124	0.0477207	9.95835e-5	0.17993	0.00180006
chrX	73827387	73827487	19113542	0	-	0.37	(0.36,0.39]	chrX	1626115	58	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1	lncRNA	lncRNA	lncRNA	lncRNA	24	129	2	2.04431	2.70571	3.36711	7.60613e-4	1.53377e-8	0.00908813	1.22322e-6
chrX	126473004	126473096	18855948	0	+	0.456522	(0.455,0.49]	chrX	1606416	4	EXON_PSEUDO	EXON_PSEUDO	MTND4P24	ENSG00000232177.1	ENST00000424002.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	35	2	2.30139	2.705705	3.11002	0.0530131	1.15314e-4	0.195536	0.0020426
chr2	20250486	20250586	2540642	0	-	0.25	[0,0.29]	chr2	228490	19	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.72806	2.705605	3.68315	0.0359089	4.43021e-5	0.144663	0.00102532
chr6	7251299	7251397	7031389	0	+	0.326531	(0.29,0.33]	chr6	538755	25	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.86069	2.70559	3.55049	0.021654	6.15323e-4	0.103926	0.00765848
chr11	62560130	62560193	12409012	0	-	0.492063	(0.49,0.53]	chr11	960944	2	CDS	CDS:UTR3:EXON_MRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	86	2	2.49297	2.70524	2.91751	6.69943e-4	1.17694e-5	0.0087033	3.1402e-4
chr4	70985112	70985211	4878944	0	+	0.272727	[0,0.29]	chr4	401906	32	UTR3	UTR3:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	65	2	2.35135	2.705215	3.05908	1.30246e-4	1.08065e-4	0.00243336	0.00193017
chr1	27406505	27406604	908768	0	-	0.515152	(0.49,0.53]	chr1	95011	24	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.5375	2.70509	2.87268	0.00175078	0.00104367	0.0180053	0.0115928
chr2	169751000	169751097	2197336	0	+	0.494845	(0.49,0.53]	chr2	201068	14	UTR3	UTR3:EXON_MRNA:INTRON	KLHL23	ENSG00000213160.10	ENST00000392647.7:ENST00000437875.1:ENST00000448589.1	protein_coding	protein_coding	protein_coding	protein_coding	6	43	2	2.5375	2.70509	2.87268	0.00175078	0.00104367	0.0180053	0.0115928
chr9	76386905	76387003	10694387	0	-	0.581633	(0.53,0.59]	chr9	809404	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1:ENST00000483155.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	90	2	2.15797	2.70507	3.25217	6.06394e-4	4.79919e-5	0.00757628	0.00109351
chr14	102048603	102048669	14495900	0	+	0.5	(0.49,0.53]	chr14	1133271	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000647366.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	36	2	1.80533	2.705045	3.60476	0.0163404	4.52633e-4	0.0867615	0.00642319
chr7	35904874	35904971	8227782	0	+	0.257732	[0,0.29]	chr7	627283	7	UTR3	UTR3:EXON_MRNA	SEPTIN7	ENSG00000122545.20	ENST00000399034.7:ENST00000350320.10:ENST00000399035.7:ENST00000425198.1:ENST00000432293.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	24	2	2.27232	2.7049250000000002	3.13753	0.00396668	0.00296574	0.0317467	0.0263871
chr17	81706905	81706972	16381180	0	+	0.567164	(0.53,0.59]	chr17	1331956	1	CDS	CDS:EXON_MRNA	MRPL12:RP13-1032I1.10	ENSG00000262814.8:ENSG00000262660.1	ENST00000333676.8:ENST00000571730.1	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	2.515	2.704635	2.89427	0.0292633	3.98634e-4	0.129773	0.00546791
chrX	68600191	68600285	18720733	0	+	0.542553	(0.53,0.59]	chrX	1597228	2	EXON_PSEUDO	EXON_PSEUDO	RPL31P63	ENSG00000236735.3	ENST00000422565.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	38	2	2.515	2.704635	2.89427	0.0292633	3.98634e-4	0.129773	0.00546791
chr1	87084193	87084279	341203	0	+	0.360465	(0.36,0.39]	chr1	33606	1	CDS	CDS:EXON_MRNA	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370551.8:ENST00000591456.1:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.38564	2.704395	3.02315	0.0476159	8.65481e-4	0.17993	0.0100741
chr8	18063184	18063230	9732871	0	-	0.369565	(0.36,0.39]	chr8	736305	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000518746.2:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000517409.2:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000523744.2:ENST00000636435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	2.56782	2.704355	2.84089	0.0128123	0.00659672	0.0719798	0.0460001
chr7	56072996	56073036	8290659	0	+	0.45	(0.42,0.455]	chr7	631537	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:INTRON	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000413952.7:ENST00000452216.5:ENST00000436782.5:ENST00000437307.6:ENST00000434526.8:ENST00000413756.5:ENST00000423763.5:ENST00000483327.5:ENST00000498777.5:ENST00000438133.5:ENST00000447501.5:ENST00000451338.1:ENST00000529457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.03532	2.7043049999999997	3.37329	0.040947	0.00136107	0.163285	0.0141115
chr8	38110394	38110467	9291474	0	+	0.452055	(0.42,0.455]	chr8	710574	1	CDS_START	CDS_START:CDS:EXON_MRNA	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000517719.5:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.03532	2.7043049999999997	3.37329	0.040947	0.00136107	0.163285	0.0141115
chr6	17647806	17647905	7619206	0	-	0.424242	(0.42,0.455]	chr6	580564	1	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.21768	2.70423	3.19078	0.00310864	0.00277726	0.0274272	0.0241009
chrX	40074398	40074496	19045136	0	-	0.571429	(0.53,0.59]	chrX	1618754	22	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	37	2	1.94437	2.70393	3.46349	0.0143432	9.2216e-4	0.0783202	0.0104432
chr9	83679861	83679949	10710551	0	-	0.420455	(0.42,0.455]	chr9	810216	2	CDS	CDS:EXON_MRNA:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	45	2	2.49412	2.703925	2.91373	0.00892357	3.62613e-4	0.0567495	0.00507539
chr1	149833574	149833671	464755	0	+	0.484536	(0.455,0.49]	chr1	46792	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	H4C14	ENSG00000270882.2	ENST00000618193.1:ENST00000614272.1:ENST00000613412.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	29	2	2.66563	2.70387	2.74211	0.0043075	0.00330545	0.0334284	0.028478
chr12	31287695	31287784	13279856	0	-	0.494382	(0.49,0.53]	chr12	1041238	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1:ENST00000539004.5:ENST00000543615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.07447	2.703855	3.33324	0.0053794	0.00162947	0.0395061	0.0169972
chr2	169638020	169638120	2196717	0	+	0.27	[0,0.29]	chr2	201011	6	UTR3	UTR3:EXON_MRNA	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000677750.1:ENST00000678721.1:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.61628	2.70372	2.79116	0.0101434	0.00287618	0.0626311	0.0247002
chrX	13342423	13342523	18585119	0	+	0.37	(0.36,0.39]	chrX	1587435	7	INTRON	INTRON	LINC01203	ENSG00000226985.7	ENST00000669963.1:ENST00000661545.1:ENST00000659526.1:ENST00000656410.1:ENST00000661104.1:ENST00000456091.2:ENST00000655502.1:ENST00000671651.1:ENST00000656979.1:ENST00000656271.1:ENST00000661629.1:ENST00000661464.1:ENST00000668192.1:ENST00000665887.1:ENST00000659191.1:ENST00000667868.1:ENST00000653729.1:ENST00000656111.1	lncRNA	lncRNA	lncRNA	lncRNA	4	25	2	2.20444	2.70321	3.20198	0.0237257	4.4092e-4	0.109365	0.0062930699999999996
chr19	1105365	1105437	17191441	0	+	0.569444	(0.53,0.59]	chr19	1411723	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPX4	ENSG00000167468.18	ENST00000616066.4:ENST00000354171.13:ENST00000589115.6:ENST00000611653.4:ENST00000593032.5:ENST00000588919.5:ENST00000585362.6:ENST00000622390.4:ENST00000614791.1:ENST00000587648.5:ENST00000592940.2:ENST00000587932.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	37	2	1.93217	2.70318	3.47419	0.0149802	8.75273e-4	0.0814081	0.0106963
chr15	68145815	68145906	14994564	0	+	0.406593	(0.39,0.42]	chr15	1178680	1	CDS	CDS:EXON_MRNA	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.21029	2.7030849999999997	3.19588	0.0100911	0.00321212	0.0625052	0.0280721
chr2	3617617	3617687	2492940	0	-	0.428571	(0.42,0.455]	chr2	225073	2	EXON_PSEUDO	EXON_PSEUDO	TMSB4XP2	ENSG00000188765.7	ENST00000335179.5	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	22	2	2.59462	2.702995	2.81137	0.0120386	0.0062772	0.0700876	0.0445415
chr4	88521381	88521477	5523026	0	-	0.4375	(0.42,0.455]	chr4	442325	5	UTR3	UTR3:EXON_MRNA	PYURF:PIGY	ENSG00000145337.5:ENSG00000255072.2	ENST00000273968.5:ENST00000527353.2	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.59462	2.702995	2.81137	0.0120386	0.0062772	0.0700876	0.0445415
chr1	21844223	21844299	890851	0	-	0.671053	(0.59,1]	chr1	92332	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	9	118	2	2.23367	2.7027900000000002	3.17191	0.00200748	1.5194e-4	0.0190066	0.00276208
chr12	47781466	47781565	12860220	0	+	0.50505	(0.49,0.53]	chr12	998325	13	UTR3	UTR3:EXON_MRNA:INTRON	SLC48A1	ENSG00000211584.14	ENST00000442892.2:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.38935	2.7027599999999996	3.01617	0.00488689	8.62231e-4	0.0376157	0.0100487
chr22	37886764	37886845	18364773	0	+	0.518519	(0.49,0.53]	chr22	1562208	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1:ENST00000450376.1:ENST00000460638.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	11	77	2	2.58765	2.702705	2.81776	3.88896e-4	4.51958e-5	0.00580877	9.44193e-4
chr6	105080958	105081057	7310767	0	+	0.353535	(0.33,0.36]	chr6	562079	23	UTR3	UTR3:EXON_MRNA	LIN28B	ENSG00000187772.8	ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.36984	2.70268	3.03552	0.00564505	0.0012034	0.041184	0.0134762
chr2	30562218	30562292	1708754	0	+	0.405405	(0.39,0.42]	chr2	167641	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	2.62131	2.702655	2.784	0.00609677	0.00261393	0.0439136	0.0230705
chr18	46084182	46084281	17103792	0	-	0.343434	(0.33,0.36]	chr18	1404349	41	UTR3	UTR3:EXON_MRNA	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	80	2	2.53704	2.7026450000000004	2.86825	2.65216e-4	2.59608e-5	0.004287	6.00814e-4
chr12	123590395	123590449	13127122	0	+	0.481481	(0.455,0.49]	chr12	1025783	2	CDS	CDS:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000438031.2:ENST00000543425.1:ENST00000262225.8:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	60	2	2.30139	2.7026250000000003	3.10386	0.0530131	5.58119e-6	0.195536	1.69644e-4
chr15	78540471	78540539	15040490	0	+	0.514706	(0.49,0.53]	chr15	1183187	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000559948.5:ENST00000560033.5:ENST00000559146.5:ENST00000044462.12:ENST00000559934.5:ENST00000558639.5:ENST00000558635.1:ENST00000560099.5:ENST00000557929.5:ENST00000558281.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	44	2	2.53011	2.702595	2.87508	0.00254862	4.55699e-4	0.0227869	0.00645757
chr6	96891003	96891103	7854049	0	-	0.28	[0,0.29]	chr6	601393	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NDUFAF4	ENSG00000123545.6	ENST00000316149.8:ENST00000478382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	2.11932	2.702575	3.28583	0.0332641	0.00346525	0.137922	0.0293796
chr16	177311	177411	15480752	0	+	0.64	(0.59,1]	chr16	1224210	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	141	1838	2	2.58516	2.7025550000000003	2.81995	5.43021e-6	7.30453e-7	1.81467e-4	3.05236e-5
chr12	124817571	124817671	13600558	0	-	0.56	(0.53,0.59]	chr12	1071740	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000544327.1:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	2.0693	2.702495	3.33569	0.0160468	1.57373e-4	0.0860154	0.00260854
chr22	31957152	31957242	18351658	0	+	0.377778	(0.36,0.39]	chr22	1560136	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	77	2	1.66365	2.70244	3.74123	0.0345996	6.78448e-8	0.143631	4.01251e-6
chr5	134206038	134206131	6844206	0	-	0.44086	(0.42,0.455]	chr5	523702	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2410N18.5:PPP2CA:CTD-2410N18.4	ENSG00000272772.1:ENSG00000113575.10:ENSG00000273345.5	ENST00000519718.1:ENST00000481195.6:ENST00000522385.1:ENST00000523082.1:ENST00000231504.5:ENST00000520515.5:ENST00000518409.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	3	22	2	2.34191	2.70242	3.06293	0.0159091	0.00492128	0.0854674	0.0366648
chr22	30977036	30977134	18344857	0	+	0.387755	(0.36,0.39]	chr22	1559168	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	38	2	2.29967	2.702365	3.10506	0.0019325	7.38785e-4	0.0184661	0.00924579
chr1	186332268	186332343	1411913	0	-	0.493333	(0.49,0.53]	chr1	142834	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.5375	2.7023	2.8671	0.0100489	0.00104367	0.0623334	0.0115928
chr12	56672965	56673065	13352305	0	-	0.38	(0.36,0.39]	chr12	1051815	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	85	2	2.5867	2.702295	2.81789	4.9257e-5	3.15979e-5	0.0010132	7.75096e-4
chr11	119093853	119093945	12626587	0	-	0.315217	(0.29,0.33]	chr11	979845	1	UTR3	UTR3:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.67277	2.702275	2.73178	0.0255386	0.00360855	0.117089	0.0296421
chr16	75657249	75657340	15742068	0	+	0.32967	(0.29,0.33]	chr16	1254288	8	UTR3	UTR3:EXON_MRNA:INTRON	TERF2IP	ENSG00000166848.7	ENST00000300086.5:ENST00000653858.1:ENST00000564671.2:ENST00000659145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	53	2	1.88142	2.70214	3.52286	0.0142455	1.64754e-6	0.0779233	6.0825e-5
chr3	14487276	14487375	3320855	0	+	0.646465	(0.59,1]	chr3	292287	24	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	35	2	2.28778	2.702125	3.11647	0.0556537	0.00535979	0.191528	0.0406564
chr6	163563645	163563745	7540757	0	+	0.44	(0.42,0.455]	chr6	575635	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	63	2	1.63684	2.70196	3.76708	0.0246118	1.18063e-6	0.114882	4.59763e-5
chr22	20952283	20952381	18300206	0	+	0.438776	(0.42,0.455]	chr22	1553647	26	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	124	2	1.92197	2.7017800000000003	3.48159	0.00136861	1.12641e-7	0.0147986	6.19945e-6
chr11	57299725	57299814	12393753	0	-	0.359551	(0.33,0.36]	chr11	958432	2	UTR3	UTR3:EXON_MRNA	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532273.5:ENST00000532437.1:ENST00000427750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	2.51797	2.701455	2.88494	0.0303594	6.89291e-4	0.130016	0.00876781
chr14	96565738	96565837	14476241	0	+	0.363636	(0.36,0.39]	chr14	1130890	8	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.63521	2.7013499999999997	2.76749	0.00633242	0.00287858	0.0446708	0.0247002
chr5	72889871	72889957	6029188	0	+	0.372093	(0.36,0.39]	chr5	472755	2	CDS	CDS:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	2.63521	2.7013499999999997	2.76749	0.00633242	0.00287858	0.0446708	0.0247002
chr7	121236772	121236831	8496228	0	+	0.38983	(0.36,0.39]	chr7	648412	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.63521	2.7013499999999997	2.76749	0.00633242	0.00287858	0.0446708	0.0247002
chr1	29148123	29148218	914072	0	-	0.431579	(0.42,0.455]	chr1	95607	5	UTR3	UTR3:EXON_MRNA	SRSF4	ENSG00000116350.17	ENST00000373795.7:ENST00000634348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	97	2	2.30525	2.70125	3.09725	1.11025e-4	3.95958e-5	0.00197545	9.47364e-4
chr6	132771035	132771129	7965488	0	-	0.43617	(0.42,0.455]	chr6	609164	1	CDS	CDS:UTR3:EXON_MRNA	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.36247	2.70125	3.04003	0.0462889	7.68268e-4	0.176878	0.00916171
chr2	110637875	110637963	2837907	0	-	0.261364	[0,0.29]	chr2	253270	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	34	2	2.16409	2.701065	3.23804	0.0125675	5.85812e-5	0.0716375	0.00117676
chr4	109992324	109992377	5042613	0	+	0.377358	(0.36,0.39]	chr4	410330	1	EXON_SMALL	EXON_SMALL:INTRON	EGF:RNU6-35P	ENSG00000138798.13:ENSG00000207260.1	ENST00000265171.10:ENST00000509793.5:ENST00000652245.1:ENST00000503392.1:ENST00000509996.1:ENST00000384530.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:retained_intron	9	53	2	1.76426	2.700865	3.63747	0.0178361	3.12796e-6	0.0918323	1.0463e-4
chr16	31094556	31094629	15916975	0	-	0.69863	(0.59,1]	chr16	1275827	1	CDS	CDS:EXON_MRNA:INTRON	RP11-196G11.1:VKORC1	ENSG00000255439.6:ENSG00000167397.15	ENST00000533518.5:ENST00000532364.1:ENST00000529564.1:ENST00000420057.2:ENST00000354895.4:ENST00000319788.11:ENST00000300851.10:ENST00000394975.3:ENST00000498155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	45	2	2.03921	2.70072	3.36223	0.0371471	0.00203572	0.151849	0.0192213
chr3	195784150	195784249	4661108	0	-	0.585859	(0.53,0.59]	chr3	385270	55	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	2.52856	2.7006	2.87264	0.00168899	0.00107225	0.0175515	0.0118238
chr8	144083977	144084040	9650251	0	+	0.52381	(0.49,0.53]	chr8	731484	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPAA1	ENSG00000197858.11	ENST00000529503.5:ENST00000525087.5:ENST00000532758.5:ENST00000530633.1:ENST00000355091.9:ENST00000361036.10:ENST00000524418.5:ENST00000528073.5:ENST00000527144.5:ENST00000525308.1:ENST00000526233.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	2.01464	2.700555	3.38647	0.0205094	1.15525e-4	0.0991175	0.00204405
chr12	49764157	49764254	12869284	0	+	0.587629	(0.53,0.59]	chr12	999645	14	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	8	64	2	2.54392	2.7002699999999997	2.85662	4.88685e-4	4.8864e-4	0.00686067	0.00638733
chr19	17581176	17581260	17254814	0	+	0.595238	(0.59,1]	chr19	1424486	1	CDS	CDS:EXON_MRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000593832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.61074	2.700135	2.78953	0.025486	9.28839e-4	0.117089	0.0105151
chr17	51161942	51162039	16266549	0	+	0.474227	(0.455,0.49]	chr17	1319594	2	UTR3	UTR3:EXON_MRNA:INTRON	NME1:NME1-NME2	ENSG00000239672.8:ENSG00000011052.21	ENST00000393196.8:ENST00000336097.7:ENST00000511355.5:ENST00000393193.6:ENST00000475573.5:ENST00000376392.10:ENST00000555572.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	69	2	2.46921	2.70012	2.93103	2.55246e-4	1.15066e-4	0.00383691	0.00219531
chr6	5109239	5109330	7579324	0	-	0.472527	(0.455,0.49]	chr6	578324	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000458438.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	2.27152	2.6999750000000002	3.12843	0.00786769	0.00392855	0.0514287	0.0322851
chrX	154354615	154354711	19278028	0	-	0.697917	(0.59,1]	chrX	1638281	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000438732.2:ENST00000474072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	64	2	2.34567	2.699935	3.0542	0.00663549	0.00313683	0.0456243	0.0264943
chr1	161783989	161784042	502050	0	+	0.415094	(0.39,0.42]	chr1	54500	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	2.69374	2.6998249999999997	2.70591	0.0185716	0.00386013	0.0932453	0.0310764
chr11	57809273	57809369	11953162	0	+	0.416667	(0.39,0.42]	chr11	914861	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.69374	2.6998249999999997	2.70591	0.0185716	0.00386013	0.0932453	0.0310764
chr3	196351428	196351528	4664979	0	-	0.32	(0.29,0.33]	chr3	385869	39	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.99415	2.69982	3.40549	0.0333928	1.12275e-4	0.140128	0.00199494
chr4	145128060	145128158	5146213	0	+	0.316327	(0.29,0.33]	chr4	416390	6	UTR3	UTR3:EXON_MRNA	ABCE1	ENSG00000164163.11	ENST00000296577.9	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.99403	2.69976	3.40549	0.0202925	1.12275e-4	0.098158	0.00199494
chr3	184321463	184321555	3949197	0	+	0.543478	(0.53,0.59]	chr3	332414	3	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000484862.5:ENST00000441154.5:ENST00000428387.5:ENST00000434061.6:ENST00000427607.5:ENST00000457456.5:ENST00000493299.1:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	81	2	2.4751	2.69937	2.92364	7.16255e-4	4.75119e-5	0.00901405	9.86142e-4
chr17	40392279	40392341	16538772	0	-	0.274194	[0,0.29]	chr17	1354567	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	2.59625	2.698795	2.80134	0.0049344	4.27104e-4	0.0379087	0.00577513
chr1	109235209	109235283	398085	0	+	0.459459	(0.455,0.49]	chr1	38583	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4:ENST00000471705.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	1.93369	2.69879	3.46389	0.00999269	9.14164e-4	0.0620664	0.0110519
chr2	113951719	113951782	2007062	0	+	0.460317	(0.455,0.49]	chr2	190792	1	CDS	CDS:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	41	2	1.90433	2.698695	3.49306	0.0185466	6.07633e-5	0.0932453	0.00121305
chr12	6528172	6528250	12713525	0	+	0.512821	(0.49,0.53]	chr12	986603	1	CDS	CDS:UTR3:EXON_MRNA	NCAPD2	ENSG00000010292.13	ENST00000539084.5:ENST00000315579.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	2.53011	2.698605	2.8671	0.0100489	0.00254862	0.0623334	0.0227869
chr20	56367772	56367871	17834380	0	+	0.50505	(0.49,0.53]	chr20	1507875	16	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.53011	2.698605	2.8671	0.0100489	0.00254862	0.0623334	0.0227869
chr1	152033723	152033800	1295125	0	-	0.506494	(0.49,0.53]	chr1	129734	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.38097	2.69857	3.01617	0.0425419	8.62231e-4	0.167547	0.0100487
chr1	51765821	51765872	191457	0	+	0.568627	(0.53,0.59]	chr1	24520	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000531828.5:ENST00000361556.9:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	1.84678	2.698395	3.55001	0.0134899	6.11776e-4	0.0745701	0.00818575
chr7	135643274	135643358	8553289	0	+	0.428571	(0.42,0.455]	chr7	652893	2	CDS	CDS:UTR3:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.20599	2.698385	3.19078	0.0227797	0.00310864	0.105293	0.0274272
chr9	35062216	35062283	10638125	0	-	0.447761	(0.42,0.455]	chr9	804525	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000680834.1:ENST00000681125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.20599	2.698385	3.19078	0.0227797	0.00310864	0.105293	0.0274272
chr7	128865667	128865757	8522611	0	+	0.544444	(0.53,0.59]	chr7	650500	2	UTR3	UTR3:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	13	96	2	2.32956	2.6983249999999996	3.06709	2.84452e-4	4.61614e-5	0.00419001	0.00106317
chr1	65226773	65226873	249724	0	+	0.29	[0,0.29]	chr1	28617	7	UTR3	UTR3:EXON_MRNA	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.72144	2.698305	3.67517	0.0389538	2.4982e-6	0.158558	8.67672e-5
chr2	74891231	74891327	1893431	0	+	0.458333	(0.455,0.49]	chr2	179646	4	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.12994	2.698085	3.26623	0.0304832	2.31662e-4	0.130204	0.00354314
chr10	68984773	68984871	11093425	0	+	0.285714	[0,0.29]	chr10	843302	21	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	16	68	2	2.68391	2.6980649999999997	2.71222	1.34594e-4	2.58846e-5	0.00249552	5.99169e-4
chr8	85328273	85328368	9920298	0	-	0.263158	[0,0.29]	chr8	749254	8	UTR3	UTR3:EXON_MRNA	CA1	ENSG00000133742.14	ENST00000523953.5:ENST00000626824.1:ENST00000523022.6:ENST00000431316.3:ENST00000542576.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.40395	2.698035	2.99212	0.0210081	0.0069187	0.101116	0.0473262
chr7	92134172	92134264	8922315	0	-	0.695652	(0.59,1]	chr7	680685	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CYP51A1:CTB-161K23.4:CTB-161K23.3	ENSG00000001630.17:ENSG00000285772.1:ENSG00000285953.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000650585.1:ENST00000435873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	108	2	2.23761	2.697865	3.15812	0.00314845	1.46709e-4	0.0277515	0.0024610500000000002
chr6	26158169	26158269	7101292	0	+	0.58	(0.53,0.59]	chr6	542808	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2:ENST00000377777.5	protein_coding	protein_coding	protein_coding	protein_coding	17	134	2	2.49063	2.69767	2.90471	1.46903e-4	5.07648e-6	0.00246392	1.71938e-4
chr1	33014522	33014594	924472	0	-	0.527778	(0.49,0.53]	chr1	97525	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5:ENST00000469238.1:ENST00000466029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	64	2	2.57142	2.697495	2.82357	8.92776e-4	8.92113e-5	0.0108581	0.00165731
chr12	24881300	24881355	13256378	0	-	0.527273	(0.49,0.53]	chr12	1038892	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	5	40	2	1.9035	2.697465	3.49143	0.0295204	6.13943e-5	0.129773	0.00122382
chr9	112218803	112218902	10802870	0	-	0.262626	[0,0.29]	chr9	818409	12	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.40395	2.697405	2.99086	0.0210081	3.24353e-5	0.101116	7.18527e-4
chr12	54233471	54233571	13342861	0	-	0.41	(0.39,0.42]	chr12	1049602	21	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.66154	2.69724	3.73294	0.0452475	0.0190864	0.174743	0.0958835
chr19	58549330	58549410	17413349	0	+	0.6125	(0.59,1]	chr19	1451212	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	118	2	2.07083	2.69713	3.32343	0.00439979	5.92654e-5	0.034236	0.00118941
chr19	9423328	9423428	17453859	0	-	0.53	(0.49,0.53]	chr19	1459628	27	INTRON	INTRON	ZNF266	ENSG00000174652.20	ENST00000592904.7:ENST00000588221.5:ENST00000588933.5:ENST00000590306.5:ENST00000651268.1:ENST00000592292.5	protein_coding	protein_coding	protein_coding	protein_coding	25	169	2	1.60124	2.69671	3.79218	0.0046316	2.98531e-9	0.0358794	2.72578e-7
chr5	139683297	139683394	6250957	0	+	0.340206	(0.33,0.36]	chr5	487158	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1:ENST00000505812.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	60	2	2.14409	2.6965399999999997	3.24899	0.00131483	1.31723e-5	0.0143561	3.45454e-4
chr8	90017123	90017202	9473304	0	+	0.278481	[0,0.29]	chr8	720717	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000521668.1:ENST00000518725.5:ENST00000517761.5:ENST00000520227.1:ENST00000522583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	28	2	2.40124	2.69634	2.99144	0.00258406	0.00112713	0.0236624	0.0122637
chr22	28794642	28794731	18464262	0	-	0.337079	(0.33,0.36]	chr22	1574926	2	UTR3	UTR3:EXON_MRNA	XBP1	ENSG00000100219.16	ENST00000216037.10:ENST00000403532.7:ENST00000484256.1:ENST00000611155.4:ENST00000405219.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.4164	2.69623	2.97606	0.011989	0.00871774	0.0700473	0.0558165
chr6	2889164	2889264	7570633	0	-	0.36	(0.33,0.36]	chr6	577661	20	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.4164	2.69623	2.97606	0.011989	0.00871774	0.0700473	0.0558165
chr7	133035007	133035100	9078006	0	-	0.516129	(0.49,0.53]	chr7	693067	2	EXON_PSEUDO	EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	protein_coding	miRNA:protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	16	105	2	2.55311	2.6961950000000003	2.83928	8.11312e-5	3.17648e-5	0.0016835	7.05916e-4
chr1	93361335	93361434	356114	0	+	0.353535	(0.33,0.36]	chr1	35144	8	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.28792	2.69611	3.1043	0.0239159	5.89179e-4	0.112531	0.00743488
chr5	72910510	72910608	6029408	0	+	0.336735	(0.33,0.36]	chr5	472817	19	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.28792	2.69611	3.1043	0.0239159	5.89179e-4	0.112531	0.00743488
chr9	111935072	111935171	10420399	0	+	0.333333	(0.33,0.36]	chr9	784485	22	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.28792	2.69611	3.1043	0.0239159	5.89179e-4	0.112531	0.00743488
chrX	41344255	41344332	18669451	0	+	0.493506	(0.49,0.53]	chrX	1592214	1	CDS	CDS:UTR3:EXON_MRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	2.38683	2.696105	3.00538	0.012654	2.13868e-4	0.0718207	0.0033174
chr10	5813346	5813434	11352939	0	-	0.568182	(0.53,0.59]	chr10	865792	2	UTR5	UTR5:EXON_MRNA:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	27	211	2	2.17854	2.69603	3.21352	1.92195e-4	1.22466e-7	0.00330081	6.66451e-6
chr10	68983008	68983106	11093407	0	+	0.255102	[0,0.29]	chr10	843302	3	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	15	70	2	2.34608	2.6959049999999998	3.04573	0.0012984	2.36982e-6	0.0142093	8.28831e-5
chr1	167541901	167542000	1347835	0	-	0.40404	(0.39,0.42]	chr1	137992	10	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	18	82	2	1.39328	2.695815	3.99835	0.0170583	1.74611e-7	0.0896731	9.04749e-6
chr8	108234949	108235025	10002644	0	-	0.210526	[0,0.29]	chr8	754207	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000679009.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	90	2	2.61582	2.695655	2.77549	8.67595e-5	8.26325e-6	0.00177086	2.35573e-4
chr5	138187490	138187568	6243596	0	+	0.333333	(0.33,0.36]	chr5	486392	2	UTR3	UTR3:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.44986	2.6956350000000002	2.94141	0.00563343	1.08179e-4	0.0422191	0.00193141
chr10	68978841	68978908	11093362	0	+	0.373134	(0.36,0.39]	chr10	843288	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.38564	2.6956100000000003	3.00558	0.0476159	2.21724e-4	0.17993	0.00341828
chr1	19179050	19179135	876755	0	-	0.517647	(0.49,0.53]	chr1	90334	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.11783	2.695555	3.27328	0.0142725	2.21441e-4	0.0780078	0.00341572
chr1	211662864	211662957	1478718	0	-	0.311828	(0.29,0.33]	chr1	149219	2	UTR3	UTR3:EXON_MRNA:INTRON	NEK2	ENSG00000117650.13	ENST00000540251.5:ENST00000366999.9	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.45373	2.69555	2.93737	0.0156405	0.00826984	0.084273700000000007	0.0534766
chr12	50453459	50453530	12871946	0	+	0.309859	(0.29,0.33]	chr12	1000155	1	CDS	CDS:EXON_MRNA:INTRON	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000614335.4:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000520064.2:ENST00000521120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	2.45373	2.69555	2.93737	0.0156405	0.00826984	0.084273700000000007	0.0534766
chr4	109818012	109818090	5041253	0	+	0.307692	(0.29,0.33]	chr4	410130	2	CDS	CDS:EXON_MRNA	GAR1	ENSG00000109534.17	ENST00000394631.7:ENST00000506840.5:ENST00000226796.7:ENST00000503671.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	2.45373	2.69555	2.93737	0.0156405	0.00826984	0.084273700000000007	0.0534766
chr7	4770544	4770643	8109664	0	+	0.323232	(0.29,0.33]	chr7	619657	82	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.45373	2.69555	2.93737	0.0156405	0.00826984	0.084273700000000007	0.0534766
chr1	47224398	47224498	985596	0	-	0.47	(0.455,0.49]	chr1	104060	3	SS3_PROX	SS3_PROX:INTRON	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3:ENST00000464796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.30139	2.6955	3.08961	0.0530131	0.00445157	0.195536	0.0340751
chr12	55967856	55967934	12896887	0	+	0.474359	(0.455,0.49]	chr12	1003778	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000555357.1:ENST00000554619.5:ENST00000556276.5:ENST00000556656.5:ENST00000556146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.30139	2.6955	3.08961	0.0530131	0.00445157	0.195536	0.0340751
chr2	47410186	47410279	1784577	0	+	0.462366	(0.455,0.49]	chr2	172455	2	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.30139	2.6955	3.08961	0.0530131	0.00445157	0.195536	0.0340751
chr2	53931834	53931922	2664804	0	-	0.477273	(0.455,0.49]	chr2	238311	1	CDS	CDS:EXON_MRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.30139	2.6955	3.08961	0.0530131	0.00445157	0.195536	0.0340751
chr12	2803735	2803830	12696876	0	+	0.568421	(0.53,0.59]	chr12	984985	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FKBP4	ENSG00000004478.8	ENST00000001008.6:ENST00000544366.1	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.2732	2.695495	3.11779	0.00369236	5.11883e-4	0.030936	0.00664583
chr2	182928840	182928899	3059941	0	-	0.38983	(0.36,0.39]	chr2	271280	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000478449.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.20444	2.69543	3.18642	0.0237257	0.00359152	0.109365	0.0302391
chr16	58546320	58546409	15966511	0	-	0.460674	(0.455,0.49]	chr16	1281162	1	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000567133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	59	2	2.37552	2.695365	3.01521	0.00134626	6.35543e-5	0.0145759	0.00124813
chr1	65431802	65431819	251607	0	+	0.529412	(0.49,0.53]	chr1	28778	1	CDS	CDS:EXON_MRNA:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.46958	2.6952	2.92082	0.00827037	0.00344146	0.0534766	0.0292838
chr2	159748603	159748703	2163037	0	+	0.53	(0.49,0.53]	chr2	199192	9	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.46958	2.6952	2.92082	0.00827037	0.00344146	0.0534766	0.0292838
chr14	101986469	101986567	14495161	0	+	0.520408	(0.49,0.53]	chr14	1132975	9	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1:ENST00000681321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	53	2	2.02795	2.69511	3.36227	0.0110299	2.26725e-5	0.0652374	5.39086e-4
chr1	3629079	3629174	13223	0	+	0.526316	(0.49,0.53]	chr1	2228	6	UTR3	UTR3:EXON_MRNA	TPRG1L	ENSG00000158109.15	ENST00000378344.7:ENST00000344579.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.13501	2.695075	3.25514	0.0287874	0.00227467	0.128869	0.0209546
chr3	38252891	38252990	3420115	0	+	0.515152	(0.49,0.53]	chr3	297237	1	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.13501	2.695075	3.25514	0.0287874	0.00227467	0.128869	0.0209546
chr3	47588110	47588208	4161762	0	-	0.520408	(0.49,0.53]	chr3	348302	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	39	2	1.70501	2.695	3.68499	0.017267	2.9991e-4	0.091184	0.00472028
chr10	35516572	35516623	11009447	0	+	0.372549	(0.36,0.39]	chr10	837229	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.32678	2.6948499999999997	3.06292	0.0193538	0.00499846	0.0943643	0.0370021
chr17	39253361	39253461	16534291	0	-	0.37	(0.36,0.39]	chr17	1353914	8	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.32678	2.6948499999999997	3.06292	0.0193538	0.00499846	0.0943643	0.0370021
chr20	41123396	41123495	17790170	0	+	0.363636	(0.36,0.39]	chr20	1503539	2	UTR3	UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	1.85874	2.69484	3.53094	0.0415243	0.0305588	0.164804	0.130016
chr19	48391454	48391551	17601761	0	-	0.71134	(0.59,1]	chr19	1482740	2	UTR5	UTR5:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000600980.1:ENST00000599084.1:ENST00000594643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	219	2	2.56136	2.694515	2.82767	7.03313e-4	1.53926e-5	0.00887257	3.93076e-4
chr9	93471304	93471387	10362359	0	+	0.421687	(0.42,0.455]	chr9	780094	3	CDS	CDS:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.63665	2.6944749999999997	2.7523	0.0153283	0.0048172	0.0828908	0.0365653
chr11	117167509	117167599	12154340	0	+	0.555556	(0.53,0.59]	chr11	936187	2	CDS	CDS:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	37	2	2.27113	2.69446	3.11779	0.0178853	5.11883e-4	0.0918323	0.00664583
chr6	36923346	36923441	7135743	0	+	0.536842	(0.53,0.59]	chr6	549804	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.27113	2.69446	3.11779	0.0178853	5.11883e-4	0.0918323	0.00664583
chr17	63593689	63593787	16317591	0	+	0.459184	(0.455,0.49]	chr17	1323671	47	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	41	2	2.64674	2.694425	2.74211	0.00330545	5.8716e-4	0.028478	0.00742908
chr17	4272219	4272318	16417100	0	-	0.343434	(0.33,0.36]	chr17	1337241	31	UTR3	UTR3:EXON_MRNA	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	2.44986	2.69435	2.93884	0.00563343	0.00135211	0.0422191	0.0140654
chr6	75254313	75254412	7800312	0	-	0.373737	(0.36,0.39]	chr6	597646	15	UTR3	UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	55	2	2.53311	2.69409	2.85507	0.00345778	3.51295e-5	0.0293796	7.71015e-4
chr2	96185941	96186039	2789820	0	-	0.428571	(0.42,0.455]	chr2	248609	12	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	75	2	2.36707	2.69404	3.02101	5.20122e-4	2.34564e-5	0.00725956	5.55116e-4
chr1	30932262	30932357	916277	0	-	0.294737	(0.29,0.33]	chr1	95957	9	UTR3	UTR3:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.86069	2.69381	3.52693	0.021654	7.50057e-6	0.103926	2.17987e-4
chr1	155725926	155726019	484454	0	+	0.408602	(0.39,0.42]	chr1	50964	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000479151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	40	2	2.03292	2.69379	3.35466	0.00788976	1.40185e-4	0.0522564	0.00236775
chr14	21234193	21234245	14520762	0	-	0.365385	(0.36,0.39]	chr14	1137270	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	107	2	2.41066	2.6936400000000003	2.97662	4.08196e-5	9.2905e-6	8.76332e-4	2.85793e-4
chr5	95898619	95898714	6719579	0	-	0.610526	(0.59,1]	chr5	517193	5	CDS	CDS:EXON_MRNA	ELL2	ENSG00000118985.16	ENST00000237853.9	protein_coding	protein_coding	protein_coding	protein_coding	2	34	2	2.32455	2.693565	3.06258	0.0520547	0.00616167	0.193787	0.0438642
chr1	52388441	52388539	1018850	0	-	0.530612	(0.53,0.59]	chr1	105610	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.76849	2.693525	3.61856	0.0420665	0.0303021	0.158792	0.129773
chr12	53382109	53382203	12885885	0	+	0.574468	(0.53,0.59]	chr12	1002309	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000551969.5:ENST00000426431.2:ENST00000548560.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.76849	2.693525	3.61856	0.0420665	0.0303021	0.158792	0.129773
chrX	53548015	53548101	19077323	0	-	0.604651	(0.59,1]	chrX	1622706	5	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	34	2	2.39747	2.693295	2.9891200000000002	0.0430221	0.00823979	0.161091	0.0540283
chr16	85675906	85676005	15798112	0	+	0.414141	(0.39,0.42]	chr16	1257094	35	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	43	2	1.79187	2.693255	3.59464	0.012522	3.6617e-5	0.0715544	8.82767e-4
chr6	33405338	33405436	7121890	0	+	0.663265	(0.59,1]	chr6	547581	6	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	1.68783	2.693215	3.6986	0.035259	4.89626e-4	0.146063	0.00639399
chrX	78125789	78125830	18747149	0	+	0.463415	(0.455,0.49]	chrX	1599854	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	52	2	2.55358	2.693205	2.83283	6.06795e-4	4.7042e-4	0.00817698	0.00621718
chr6	43525160	43525214	7708091	0	-	0.425926	(0.42,0.455]	chr6	591467	2	CDS	CDS:UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2:ENST00000488195.6:ENST00000455285.2:ENST00000486936.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.07474	2.693175	3.31161	0.0338882	0.00186138	0.139841	0.018635
chr9	83663958	83664043	10710385	0	-	0.505882	(0.49,0.53]	chr9	810186	2	CDS	CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1:ENST00000527373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	2.38097	2.693175	3.00538	0.0425419	2.13868e-4	0.167547	0.0033174
chr20	35277615	35277713	17952389	0	-	0.673469	(0.59,1]	chr20	1520648	14	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MMP24OS:RP4-614O4.11	ENSG00000126005.17:ENSG00000261582.1	ENST00000635104.1:ENST00000566203.6:ENST00000433764.5:ENST00000438751.5:ENST00000454184.5:ENST00000456350.5:ENST00000444717.1:ENST00000455178.1:ENST00000456790.2:ENST00000435366.2:ENST00000424358.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	45	2	2.6115	2.69284	2.77418	0.0160729	0.00584247	0.0860154	0.0422426
chr20	49096438	49096525	17811875	0	+	0.413793	(0.39,0.42]	chr20	1506600	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.27012	2.692805	3.11549	0.00945558	0.00403491	0.0594007	0.032143
chr3	33836191	33836266	3399585	0	+	0.426667	(0.42,0.455]	chr3	295706	3	CDS	CDS:UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.32662	2.692755	3.05889	0.00524205	0.00161131	0.0399155	0.01608
chr2	74156172	74156271	2740232	0	-	0.282828	[0,0.29]	chr2	243880	38	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	9	40	2	2.6799	2.692685	2.70547	0.00121378	2.19396e-4	0.0135383	0.00339288
chrX	154351883	154351952	19277987	0	-	0.57971	(0.53,0.59]	chrX	1638252	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000474358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	49	2	1.83524	2.692625	3.55001	0.00732584	6.11776e-4	0.0491463	0.00818575
chr12	6517431	6517499	12713401	0	+	0.441176	(0.42,0.455]	chr12	986547	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000536090.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	22	2	2.32629	2.69259	3.05889	0.0153564	0.00524205	0.0832114	0.0399155
chr17	40834679	40834778	16225607	0	+	0.424242	(0.42,0.455]	chr17	1312338	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TMEM99	ENSG00000167920.10	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1:ENST00000671399.1:ENST00000670968.1	lncRNA	lncRNA	lncRNA	lncRNA	3	22	2	2.32629	2.69259	3.05889	0.0153564	0.00524205	0.0832114	0.0399155
chr6	41097609	41097709	7148312	0	+	0.45	(0.42,0.455]	chr6	551226	3	UTR3	UTR3:EXON_MRNA	NFYA	ENSG00000001167.15	ENST00000341376.11:ENST00000353205.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.32629	2.69259	3.05889	0.0153564	0.00524205	0.0832114	0.0399155
chr9	131230637	131230737	10496701	0	+	0.57	(0.53,0.59]	chr9	793382	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000498010.2:ENST00000476004.5:ENST00000528406.1:ENST00000496921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	43	2	2.15403	2.6924400000000004	3.2308500000000002	0.0118065	2.81517e-4	0.0686664	0.00415519
chr10	35530123	35530183	11009586	0	+	0.466667	(0.455,0.49]	chr10	837244	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000465416.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr15	43474672	43474767	15247390	0	-	0.463158	(0.455,0.49]	chr15	1201427	1	CDS	CDS:EXON_MRNA	TP53BP1	ENSG00000067369.14	ENST00000382044.9:ENST00000263801.7:ENST00000382039.7:ENST00000450115.6:ENST00000572085.5:ENST00000413546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr17	39408950	39409049	16535851	0	-	0.484848	(0.455,0.49]	chr17	1354013	15	CDS	CDS:UTR3:EXON_MRNA:INTRON	MED1	ENSG00000125686.12	ENST00000394287.7:ENST00000300651.11:ENST00000577831.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr19	48961183	48961270	17368058	0	+	0.471264	(0.455,0.49]	chr19	1442227	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAX	ENSG00000087088.20	ENST00000502487.5:ENST00000345358.12:ENST00000513545.5:ENST00000293288.12:ENST00000391871.4:ENST00000506183.5:ENST00000354470.7:ENST00000356483.8:ENST00000415969.6:ENST00000513217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr20	2660762	2660829	17879618	0	-	0.477612	(0.455,0.49]	chr20	1512932	2	CDS	CDS:EXON_MRNA	IDH3B	ENSG00000101365.21	ENST00000380851.9:ENST00000380843.9:ENST00000474315.5:ENST00000488299.5:ENST00000613370.1:ENST00000462967.5:ENST00000491065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr20	33623488	33623580	17760381	0	+	0.478261	(0.455,0.49]	chr20	1499892	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CBFA2T2	ENSG00000078699.22	ENST00000342704.11:ENST00000375279.6:ENST00000344201.7:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5:ENST00000359606.3:ENST00000491618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr5	32363947	32364045	6518982	0	-	0.489796	(0.455,0.49]	chr5	504949	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000502988.5:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chrX	52696895	52696984	19074122	0	-	0.483146	(0.455,0.49]	chrX	1622050	1	UTR3	UTR3:EXON_MRNA	SSX2	ENSG00000241476.8	ENST00000337502.5:ENST00000336777.9	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.53286	2.69229	2.85172	0.0282409	0.010864	0.124386	0.0643837
chr21	33532400	33532456	18220634	0	-	0.553571	(0.53,0.59]	chr21	1546412	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000497313.5:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000488791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	43	2	2.64475	2.6922449999999998	2.73974	0.00453071	9.00802e-4	0.0351187	0.0102618
chr1	155290275	155290374	1307533	0	-	0.494949	(0.49,0.53]	chr1	132189	11	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	11	79	2	2.39164	2.69224	2.99284	0.00116644	1.30254e-5	0.0131312	3.42469e-4
chr1	226361968	226362025	1533021	0	-	0.45614	(0.455,0.49]	chr1	153421	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000491816.1:ENST00000468608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.69053	2.691985	2.69344	0.0182983	0.0176068	0.0925808	0.0925619
chr2	216125973	216126031	2379907	0	+	0.482759	(0.455,0.49]	chr2	213786	2	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000493706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.69053	2.691985	2.69344	0.0182983	0.0176068	0.0925808	0.0925619
chr3	116646359	116646451	4379884	0	-	0.456522	(0.455,0.49]	chr3	364391	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	LSAMP:BZW1P2	ENSG00000185565.12:ENSG00000198406.7	ENST00000474851.1:ENST00000473537.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	17	2	2.69053	2.691985	2.69344	0.0182983	0.0176068	0.0925808	0.0925619
chr7	44833820	44833917	8800360	0	-	0.474227	(0.455,0.49]	chr7	671367	20	UTR3	UTR3:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.69053	2.691985	2.69344	0.0182983	0.0176068	0.0925808	0.0925619
chr10	91278414	91278513	11187741	0	+	0.383838	(0.36,0.39]	chr10	850434	2	UTR3	UTR3:EXON_MRNA	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.1437	2.6919750000000002	3.24025	0.0340515	2.74161e-4	0.141465	0.00406677
chr10	123165067	123165167	11299075	0	+	0.37	(0.36,0.39]	chr10	861591	1	UTR3	UTR3:EXON_MRNA	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.1437	2.6919750000000002	3.24025	0.0340515	2.74161e-4	0.141465	0.00406677
chr20	6214490	6214589	17665989	0	+	0.363636	(0.36,0.39]	chr20	1493650	9	EXON_PSEUDO	EXON_PSEUDO	RP4-775C13.1	ENSG00000234241.1	ENST00000434910.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	28	2	2.1437	2.6919750000000002	3.24025	0.0340515	2.74161e-4	0.141465	0.00406677
chr9	40106157	40106257	10658754	0	-	0.58	(0.53,0.59]	chr9	806389	4	SS5_PROX	SS5_PROX:INTRON	FGF7P3:RP11-204M4.4	ENSG00000204837.5:ENSG00000284116.1	ENST00000640245.1:ENST00000639363.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	3	27	2	2.37399	2.691945	3.0099	0.0126178	0.00600486	0.0717599	0.042887
chrX	47203133	47203214	18686790	0	+	0.54321	(0.53,0.59]	chrX	1593221	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000490869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.37399	2.691945	3.0099	0.0126178	0.00600486	0.0717599	0.042887
chr17	7224145	7224243	16103656	0	+	0.561224	(0.53,0.59]	chr17	1296166	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACADVL	ENSG00000072778.20	ENST00000543245.6:ENST00000322910.9:ENST00000350303.9:ENST00000356839.10:ENST00000583858.5:ENST00000585203.6:ENST00000579425.5:ENST00000542255.6:ENST00000579546.1:ENST00000578711.1:ENST00000583850.5:ENST00000583074.5:ENST00000579894.5:ENST00000579391.1:ENST00000578319.5:ENST00000578809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.27113	2.6919399999999998	3.11275	0.0178853	0.00407571	0.0918323	0.032143
chr2	70987023	70987122	2728040	0	-	0.585859	(0.53,0.59]	chr2	243102	12	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.27113	2.6919399999999998	3.11275	0.0178853	0.00407571	0.0918323	0.032143
chr1	26255467	26255567	108660	0	+	0.44	(0.42,0.455]	chr1	12909	4	CDS	CDS:EXON_MRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.19225	2.691515	3.19078	0.00548036	0.00310864	0.0402071	0.0274272
chr1	113958140	113958215	418045	0	+	0.533333	(0.53,0.59]	chr1	41150	2	CDS	CDS:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369559.8:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.2596	2.6915	3.1234	0.0185443	0.00390623	0.0948733	0.0322851
chr7	2362644	2362704	8096156	0	+	0.566667	(0.53,0.59]	chr7	618857	1	CDS	CDS:UTR5:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000431643.5:ENST00000360876.9:ENST00000413917.5:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.2596	2.6915	3.1234	0.0185443	0.00390623	0.0948733	0.0322851
chr2	85597444	85597504	1925167	0	+	0.55	(0.53,0.59]	chr2	181183	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RNF181	ENSG00000168894.10	ENST00000441634.5:ENST00000306368.9:ENST00000443647.5:ENST00000456023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.36244	2.69149	3.02054	0.0131162	0.00577011	0.073569	0.0426551
chr5	154795246	154795319	6314802	0	+	0.520548	(0.49,0.53]	chr5	492451	2	CDS	CDS:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6:ENST00000524248.5:ENST00000523163.5:ENST00000518595.1:ENST00000518742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	43	2	1.94299	2.6914499999999997	3.43991	0.0152714	8.40266e-5	0.0828908	0.00158427
chr11	16755300	16755398	11825840	0	+	0.316327	(0.29,0.33]	chr11	905236	3	UTR3	UTR3:EXON_MRNA	C11orf58	ENSG00000110696.10	ENST00000228136.9:ENST00000524461.1:ENST00000531658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	1.50081	2.69144	3.88207	0.0510523	1.56259e-4	0.182134	0.00282486
chr1	171683688	171683782	1368502	0	-	0.43617	(0.42,0.455]	chr1	139450	7	EXON_PSEUDO	EXON_PSEUDO	RPL4P3	ENSG00000230364.1	ENST00000428881.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	24	2	2.57051	2.6911300000000002	2.81175	0.0265466	0.00227654	0.120071	0.0209546
chr12	123345413	123345491	13595600	0	-	0.435897	(0.42,0.455]	chr12	1071125	3	CDS	CDS:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.57051	2.6911300000000002	2.81175	0.0265466	0.00227654	0.120071	0.0209546
chr3	17159207	17159305	4059112	0	-	0.438776	(0.42,0.455]	chr3	341127	22	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.57051	2.6911300000000002	2.81175	0.0265466	0.00227654	0.120071	0.0209546
chr3	47867245	47867338	4163916	0	-	0.44086	(0.42,0.455]	chr3	348515	1	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.57051	2.6911300000000002	2.81175	0.0265466	0.00227654	0.120071	0.0209546
chr2	65265108	65265175	1854339	0	+	0.373134	(0.36,0.39]	chr2	175976	2	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.85874	2.69109	3.52344	0.0415243	7.31653e-6	0.164804	2.13393e-4
chr16	70253732	70253800	15996880	0	-	0.514706	(0.49,0.53]	chr16	1284598	2	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	92	2	2.55216	2.691005	2.82985	2.05125e-4	4.41162e-5	0.00347938	9.27078e-4
chr9	112227410	112227482	10802959	0	-	0.430556	(0.42,0.455]	chr9	818421	1	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	27	186	2	2.19686	2.6909799999999997	3.1851	3.00848e-4	4.54782e-8	0.00472028	2.83432e-6
chr10	73780061	73780156	11115978	0	+	0.431579	(0.42,0.455]	chr10	845952	14	EXON_LNCRNA	EXON_LNCRNA	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr15	89196512	89196611	15093453	0	+	0.434343	(0.42,0.455]	chr15	1187100	12	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr16	19502185	19502284	15879321	0	-	0.424242	(0.42,0.455]	chr16	1269737	6	UTR3	UTR3:EXON_MRNA	GDE1	ENSG00000006007.12	ENST00000353258.8	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr2	167869899	167869980	2998327	0	-	0.444444	(0.42,0.455]	chr2	265447	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr2	171966408	171966460	2208549	0	+	0.442308	(0.42,0.455]	chr2	202148	1	CDS	CDS:UTR3:EXON_MRNA	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5:ENST00000392584.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr3	132176243	132176336	3742374	0	+	0.451613	(0.42,0.455]	chr3	320433	10	EXON_PSEUDO	EXON_PSEUDO	PSMC2P1	ENSG00000240854.1	ENST00000470499.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr7	6022445	6022544	8662387	0	-	0.454545	(0.42,0.455]	chr7	662529	3	UTR3	UTR3:EXON_MRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.57051	2.6909400000000003	2.81137	0.0265466	0.0120386	0.120071	0.0700876
chr7	127591539	127591619	8514807	0	+	0.525	(0.49,0.53]	chr7	649588	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF5:FSCN3	ENSG00000004059.11:ENSG00000106328.10	ENST00000463733.5:ENST00000000233.10:ENST00000478328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	107	2	2.57787	2.6909099999999997	2.80395	7.95993e-5	1.56203e-5	0.00150748	4.37822e-4
chr7	155298463	155298541	8632550	0	+	0.717949	(0.59,1]	chr7	659263	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000425172.1:ENST00000340368.9:ENST00000342407.5	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	2.3821	2.69085	2.9996	0.00554753	3.344e-4	0.0417049	0.00472923
chr12	53464719	53464810	12886582	0	+	0.56044	(0.53,0.59]	chr12	1002444	1	EXON_SMALL	EXON_SMALL:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-793H13.8:PCBP2:PCBP2-OT1:ENSG10010139146.1	ENSG00000257379.1:ENSG00000197111.16:ENSG00000282977.1:ENSG00000273658.1	ENST00000547717.1:ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000546652.6:ENST00000562264.5:ENST00000550585.5:ENST00000547987.2:ENST00000553064.6:ENST00000547859.2:ENST00000549272.1:ENST00000634357.1:ENST00000612963.1	misc_RNA	misc_RNA	misc_RNA:protein_coding:lncRNA	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	11	87	2	2.42789	2.69078	2.95367	5.31454e-4	3.88976e-5	0.00740832	8.42006e-4
chr7	119775403	119775502	9032803	0	-	0.343434	(0.33,0.36]	chr7	689727	229	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	13	63	2	2.68248	2.69075	2.69902	1.17641e-4	8.87279e-5	0.00206264	0.00179287
chr12	110339280	110339341	13085830	0	+	0.360656	(0.36,0.39]	chr12	1020518	1	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	37	2	2.38564	2.690665	2.99569	0.0476159	7.37624e-5	0.17993	0.00141413
chr17	47664158	47664213	16251776	0	+	0.4	(0.39,0.42]	chr17	1316680	1	CDS	CDS:EXON_MRNA:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	37	2	2.02663	2.690645	3.35466	0.0130764	1.40185e-4	0.0729985	0.00236775
chr2	38482231	38482327	1748003	0	+	0.510417	(0.49,0.53]	chr2	169990	5	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	84	2	2.54108	2.690645	2.84021	5.09746e-4	2.07916e-5	0.00713668	5.02099e-4
chr3	32717153	32717237	3396064	0	+	0.357143	(0.33,0.36]	chr3	295343	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CNOT10	ENSG00000182973.19	ENST00000328834.9:ENST00000331889.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000455381.5:ENST00000463697.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	21	2	2.05855	2.690625	3.3227	0.018622	0.00222616	0.0952021	0.0211992
chr3	177022618	177022717	4593453	0	-	0.333333	(0.33,0.36]	chr3	379622	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	21	2	2.05855	2.690625	3.3227	0.018622	0.00222616	0.0952021	0.0211992
chr3	184319424	184319506	3949168	0	+	0.463415	(0.455,0.49]	chr3	332393	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5:ENST00000444861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.90433	2.6905200000000002	3.47671	0.0368644	0.0185466	0.145024	0.0932453
chr6	31669429	31669508	7116083	0	+	0.582278	(0.53,0.59]	chr6	545971	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2:ENST00000409691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	108	2	2.44938	2.69039	2.9314	1.90517e-4	2.15321e-5	0.0032874	5.14531e-4
chr6	108211777	108211869	7883753	0	-	0.358696	(0.33,0.36]	chr6	603535	7	UTR3	UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	51	2	2.58647	2.690365	2.79426	6.31966e-4	1.14296e-4	0.00837621	0.00202776
chr18	31546841	31546939	16809168	0	+	0.367347	(0.36,0.39]	chr18	1386482	2	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	11	66	2	1.74874	2.6903449999999998	3.63195	0.0142811	6.58419e-7	0.0780385	2.80477e-5
chr11	60903786	60903861	12402846	0	-	0.52	(0.49,0.53]	chr11	959946	2	CDS	CDS:UTR5:EXON_MRNA	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000541371.5:ENST00000546152.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.38204	2.690265	2.99849	0.00630123	0.0049129	0.0445415	0.0366648
chr7	128770840	128770938	8521865	0	+	0.438776	(0.42,0.455]	chr7	650198	18	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	2.68545	2.690235	2.69502	0.00135767	2.01357e-4	0.0146849	0.00317801
chr4	118817263	118817337	5618803	0	-	0.513514	(0.49,0.53]	chr4	447702	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5:ENST00000503683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	54	2	2.50745	2.6900649999999997	2.87268	0.00175078	3.33735e-4	0.0180053	0.00472923
chr3	182943807	182943906	4615663	0	-	0.353535	(0.33,0.36]	chr3	380839	59	UTR3	UTR3:EXON_MRNA	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.51887	2.6898	2.86073	0.0358636	0.0105608	0.147298	0.0644466
chr7	112295868	112295957	8460020	0	+	0.348315	(0.33,0.36]	chr7	646484	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ZNF277	ENSG00000198839.10	ENST00000361822.8:ENST00000361946.8:ENST00000457808.5:ENST00000425229.5:ENST00000450657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.51887	2.6898	2.86073	0.0358636	0.0105608	0.147298	0.0644466
chr8	140523052	140523151	10132073	0	-	0.343434	(0.33,0.36]	chr8	760954	30	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.51887	2.6898	2.86073	0.0358636	0.0105608	0.147298	0.0644466
chr5	73504346	73504432	6032206	0	+	0.453488	(0.42,0.455]	chr5	473097	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000507081.6:ENST00000676856.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	87	2	2.0198	2.689695	3.35959	0.00505434	7.27746e-7	0.0387703	3.04215e-5
chr14	104836186	104836281	14799097	0	-	0.631579	(0.59,1]	chr14	1159997	3	EXON_PSEUDO	EXON_PSEUDO	RPS2P4	ENSG00000196183.5	ENST00000476944.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	33	2	2.61074	2.68938	2.76802	0.025486	0.0158525	0.117089	0.0854671
chr7	44840898	44840955	8800433	0	-	0.596491	(0.59,1]	chr7	671379	1	CDS	CDS:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.61074	2.68938	2.76802	0.025486	0.0158525	0.117089	0.0854671
chr9	132988196	132988286	10502697	0	+	0.611111	(0.59,1]	chr9	794035	1	CDS	CDS:EXON_MRNA	GFI1B	ENSG00000165702.15	ENST00000339463.7:ENST00000636137.1:ENST00000372122.4:ENST00000372123.5:ENST00000636263.1	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.61074	2.68938	2.76802	0.025486	0.0158525	0.117089	0.0854671
chr12	57822905	57823005	13358228	0	-	0.6	(0.59,1]	chr12	1053218	31	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7:ENST00000548823.1:ENST00000547169.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.68392	2.6893450000000003	2.69477	0.0202468	0.020208	0.0984041	0.0978331
chr2	62705811	62705891	1845457	0	+	0.7625	(0.59,1]	chr2	175168	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.68392	2.6893450000000003	2.69477	0.0202468	0.020208	0.0984041	0.0978331
chr19	810726	810826	17189581	0	+	0.63	(0.59,1]	chr19	1411054	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	174	2	2.54044	2.689235	2.83803	3.24487e-4	8.45202e-5	0.00499642	0.00158911
chr3	9937576	9937676	3300996	0	+	0.59	(0.53,0.59]	chr3	290310	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-1020A11.3:CRELD1	ENSG00000288550.2:ENSG00000163703.20	ENST00000682122.1:ENST00000683484.1:ENST00000683061.1:ENST00000681970.1:ENST00000683279.1:ENST00000684493.1:ENST00000673935.2:ENST00000683239.1:ENST00000673737.2:ENST00000682403.1:ENST00000683232.1:ENST00000683970.1:ENST00000683316.1:ENST00000683547.1:ENST00000683083.1:ENST00000383811.8:ENST00000452070.6:ENST00000682798.1:ENST00000467713.6:ENST00000683888.1:ENST00000683189.1:ENST00000684181.1:ENST00000674057.1:ENST00000682642.1:ENST00000682120.1:ENST00000683603.1:ENST00000684291.1:ENST00000683127.1:ENST00000684648.1:ENST00000465716.2:ENST00000674067.2:ENST00000682907.1:ENST00000682906.1:ENST00000683891.1:ENST00000682318.1:ENST00000682200.1:ENST00000684629.1:ENST00000684243.1:ENST00000326434.9:ENST00000683835.1:ENST00000682783.1:ENST00000682790.1:ENST00000682355.1:ENST00000682570.1:ENST00000684613.1:ENST00000683601.1:ENST00000682397.1:ENST00000683301.1:ENST00000682884.1:ENST00000683507.1:ENST00000683982.1:ENST00000683921.1:ENST00000684212.1:ENST00000682929.1:ENST00000684526.1:ENST00000673677.2:ENST00000684318.1:ENST00000684601.1:ENST00000397170.8:ENST00000683849.1:ENST00000682771.1:ENST00000673635.2:ENST00000684532.1:ENST00000414117.6:ENST00000683736.1:ENST00000682866.1:ENST00000683122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	2.62668	2.6892300000000002	2.75178	0.00157636	8.47358e-4	0.015761	0.0104407
chr19	11120445	11120522	17230188	0	+	0.675325	(0.59,1]	chr19	1419612	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	2.20648	2.689195	3.17191	0.00341703	1.5194e-4	0.0283456	0.00276208
chr19	38632429	38632496	17322862	0	+	0.462687	(0.455,0.49]	chr19	1434244	1	CDS	CDS:EXON_MRNA:INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000592558.1:ENST00000588299.1:ENST00000590134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	41	2	2.35644	2.689025	3.02161	0.00555877	2.07727e-4	0.0405952	0.00351752
chr1	1789124	1789196	829705	0	-	0.527778	(0.49,0.53]	chr1	82940	2	CDS	CDS:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5:ENST00000471354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	42	2	2.42431	2.68861	2.95291	0.0018555	0.00119735	0.0178545	0.0134293
chr10	74123216	74123315	11575826	0	-	0.50505	(0.49,0.53]	chr10	881667	31	UTR3	UTR3:EXON_MRNA	AP3M1	ENSG00000185009.13	ENST00000355264.9:ENST00000372745.1	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.42431	2.68861	2.95291	0.0018555	0.00119735	0.0178545	0.0134293
chr2	169821182	169821273	3007768	0	-	0.32967	(0.29,0.33]	chr2	266513	2	CDS	CDS:EXON_MRNA:INTRON	METTL5	ENSG00000138382.15	ENST00000409837.5:ENST00000392640.6:ENST00000409965.5:ENST00000260953.10:ENST00000409340.5:ENST00000442181.5:ENST00000308099.7:ENST00000537825.5:ENST00000410097.5:ENST00000538491.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.06067	2.6886	3.31653	0.0384863	0.00261621	0.149227	0.0238929
chr5	154816825	154816922	6315039	0	+	0.556701	(0.53,0.59]	chr5	492515	29	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.51602	2.68852	2.86102	0.00264912	0.0017805	0.024013	0.0172974
chr17	45096193	45096285	16237663	0	+	0.402174	(0.39,0.42]	chr17	1314992	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000590310.2:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000543908.5:ENST00000590114.6:ENST00000585561.5:ENST00000592654.3:ENST00000588455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	2.38186	2.688465	2.99507	0.00637824	0.00601449	0.0449937	0.0434483
chr2	44322792	44322854	2624167	0	-	0.387097	(0.36,0.39]	chr2	236331	2	CDS	CDS:EXON_MRNA	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000444696.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7:ENST00000420756.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	2.48922	2.68842	2.88762	0.0110399	4.35345e-4	0.0652374	0.005869
chr14	20325538	20325595	14517353	0	-	0.368421	(0.36,0.39]	chr14	1136510	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000556563.5:ENST00000553291.5:ENST00000553516.5:ENST00000555348.5:ENST00000557114.5:ENST00000555963.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	2.19	2.6882099999999998	3.18642	0.0111937	0.00359152	0.0665375	0.0302391
chr17	75182834	75182896	16682648	0	-	0.629032	(0.59,1]	chr17	1373002	1	UTR5	UTR5:EXON_MRNA	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7	protein_coding	protein_coding	protein_coding	protein_coding	9	129	2	1.53353	2.68802	3.84251	0.0327965	2.55776e-6	0.137886	8.84046e-5
chr14	20457229	20457318	14171285	0	+	0.550562	(0.53,0.59]	chr14	1109116	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	APEX1	ENSG00000100823.12	ENST00000555414.5:ENST00000553681.5:ENST00000216714.8:ENST00000398030.8:ENST00000553555.5:ENST00000555839.5:ENST00000557159.5:ENST00000557054.1:ENST00000557365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	29	2	2.515	2.6880100000000002	2.86102	0.0292633	0.0017805	0.129773	0.0172974
chr2	231085018	231085114	2423323	0	+	0.458333	(0.455,0.49]	chr2	218344	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1:ENST00000488354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.40664	2.687945	2.96925	0.0123662	0.00698725	0.0705839	0.0473262
chr16	2818871	2818969	15495143	0	+	0.55102	(0.53,0.59]	chr16	1227870	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000570629.5:ENST00000570594.5:ENST00000574813.5:ENST00000577043.1:ENST00000575199.1:ENST00000574265.1:ENST00000575739.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	72	2	2.01641	2.68792	3.35943	0.0108917	6.21512e-6	0.0645168	1.85773e-4
chr1	205717088	205717187	1462026	0	-	0.40404	(0.39,0.42]	chr1	147460	44	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	23	126	2	2.37635	2.687895	2.99944	5.69826e-5	2.03026e-6	0.00126443	7.24847e-5
chr21	8218386	8218486	18041202	0	+	0.5	(0.49,0.53]	chr21	1530814	58	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	3006	18956	2	2.58078	2.68789	2.795	6.56417e-8	5.5008e-9	3.89476e-6	5.03272e-7
chr7	75422205	75422305	8858975	0	-	0.66	(0.59,1]	chr7	676969	8	CDS	CDS:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	2.19905	2.687605	3.17616	0.0105866	0.00434232	0.0644466	0.0339139
chr2	96289897	96289996	2790431	0	-	0.545455	(0.53,0.59]	chr2	248775	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	10	79	2	2.19041	2.68744	3.18447	0.00191981	2.12116e-5	0.019137	5.07604e-4
chr2	32464744	32464823	1713485	0	+	0.455696	(0.455,0.49]	chr2	168105	4	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.04847	2.68742	3.32637	0.0192065	1.64563e-4	0.0943643	0.00269001
chr5	131162613	131162676	6826823	0	-	0.444444	(0.42,0.455]	chr5	522069	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000675135.1:ENST00000508495.5:ENST00000508488.2:ENST00000676117.1:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2:ENST00000506207.2:ENST00000504202.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	44	2	2.37815	2.687405	2.99666	0.00123168	0.00104775	0.0131094	0.0123035
chr1	205715301	205715401	1462008	0	-	0.38	(0.36,0.39]	chr1	147460	26	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.04221	2.68731	3.33241	0.00653435	0.00193631	0.0456317	0.0192272
chr5	91374194	91374276	6695354	0	-	0.378049	(0.36,0.39]	chr5	516153	2	CDS	CDS:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000505631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	30	2	2.04221	2.68731	3.33241	0.00653435	0.00193631	0.0456317	0.0192272
chr2	26232159	26232219	2566066	0	-	0.566667	(0.53,0.59]	chr2	230615	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2:ENST00000461025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	58	2	2.57867	2.687025	2.79538	0.00198261	2.47731e-4	0.0195088	0.00374232
chr2	61493992	61494091	2690517	0	-	0.333333	(0.33,0.36]	chr2	240373	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000460037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	82	2	2.61803	2.68687	2.75571	3.98726e-5	3.40553e-5	8.58111e-4	8.32504e-4
chr7	44578784	44578883	8800220	0	-	0.454545	(0.42,0.455]	chr7	671335	10	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.66697	2.68654	2.70611	0.0190326	0.00397496	0.0958835	0.0322851
chr3	23887566	23887632	3358476	0	+	0.5	(0.49,0.53]	chr3	294101	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1:ENST00000493707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	28	2	2.11783	2.6864850000000002	3.25514	0.0142725	0.00227467	0.0780078	0.0209546
chr5	181241573	181241639	7008998	0	-	0.590909	(0.59,1]	chr5	537334	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504128.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000502890.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	442	2	2.67411	2.68645	2.69879	2.07689e-5	1.1959e-5	5.52689e-4	3.18326e-4
chr3	98593576	98593648	4319686	0	-	0.638889	(0.59,1]	chr3	360295	2	UTR5	UTR5:EXON_MRNA	CPOX	ENSG00000080819.9	ENST00000647941.2:ENST00000513674.1:ENST00000515041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	72	2	2.58269	2.68611	2.78953	0.0067313	9.28839e-4	0.0461258	0.0105151
chr17	7501288	7501383	16105166	0	+	0.431579	(0.42,0.455]	chr17	1296738	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	38	2	2.34191	2.6860049999999998	3.0301	0.0159091	1.85605e-4	0.0854674	0.00297242
chr17	28591981	28592071	16486142	0	-	0.533333	(0.53,0.59]	chr17	1347856	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000531839.5:ENST00000578479.1:ENST00000580567.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	2.57867	2.6858899999999997	2.79311	0.00198261	6.84253e-4	0.0195088	0.00836671
chr17	28638333	28638415	16486670	0	-	0.597561	(0.59,1]	chr17	1348044	2	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.24397	2.685835	3.1277	0.0206682	0.00490589	0.0997234	0.0366648
chr6	31862094	31862191	7662806	0	-	0.628866	(0.59,1]	chr6	585400	2	CDS	CDS:EXON_MRNA	NEU1	ENSG00000204386.12	ENST00000375631.5:ENST00000495807.1:ENST00000491768.5:ENST00000480384.1:ENST00000678869.1:ENST00000677054.1:ENST00000677512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	44	2	2.24397	2.685835	3.1277	0.0206682	0.00490589	0.0997234	0.0366648
chr16	11350887	11350984	15543384	0	+	0.463918	(0.455,0.49]	chr16	1231099	2	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000576027.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	34	2	2.61558	2.6857249999999997	2.75587	0.00293507	0.00184897	0.025146	0.0185736
chr1	32657499	32657572	130171	0	+	0.479452	(0.455,0.49]	chr1	16067	2	CDS	CDS:EXON_MRNA:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000401893.7:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000525506.1:ENST00000373485.5:ENST00000477563.6:ENST00000458695.6:ENST00000490500.5:ENST00000445722.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.45014	2.6855650000000004	2.92099	0.00397453	0.00138399	0.0322851	0.0143168
chrX	71300486	71300580	18730901	0	+	0.553191	(0.53,0.59]	chrX	1598445	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	90	2	2.14673	2.68534	3.22395	0.00239236	5.81032e-6	0.0225356	1.75356e-4
chrX	300119	300217	18549163	0	+	0.479592	(0.455,0.49]	chrX	1585413	9	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	8	51	2	2.40916	2.685275	2.96139	0.00105201	2.95549e-4	0.0116806	0.00467597
chr7	56059543	56059640	8290505	0	+	0.474227	(0.455,0.49]	chr7	631491	1	CDS	CDS:EXON_MRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.35644	2.68527	3.0141	0.00555877	9.3076e-4	0.0405952	0.0111917
chr15	82540132	82540229	15412569	0	-	0.71134	(0.59,1]	chr15	1218670	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS17:RP11-152F13.10	ENSG00000182774.13:ENSG00000260836.2	ENST00000647841.1:ENST00000561157.5:ENST00000558397.1:ENST00000560612.1:ENST00000642270.1:ENST00000562833.2:ENST00000560639.1:ENST00000559776.1:ENST00000560229.6:ENST00000559273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	11	159	2	2.20941	2.685245	3.16108	0.00355442	1.18814e-5	0.0300236	3.16502e-4
chr12	10506845	10506939	12732051	0	+	0.414894	(0.39,0.42]	chr12	989914	10	CDS	CDS:EXON_MRNA	EIF2S3B	ENSG00000180574.3	ENST00000322446.3:ENST00000538173.1	protein_coding	protein_coding	protein_coding	protein_coding	8	40	2	2.04237	2.6852400000000003	3.32811	0.00286705	0.00182819	0.0246558	0.0183913
chr20	47654899	47654998	17809186	0	+	0.434343	(0.42,0.455]	chr20	1506125	16	UTR3	UTR3:EXON_MRNA	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.99701	2.68515	3.37329	0.0235036	0.00136107	0.111072	0.0141115
chr10	123139223	123139323	11298925	0	+	0.51	(0.49,0.53]	chr10	861538	16	UTR3	UTR3:EXON_MRNA	HMX3	ENSG00000188620.11	ENST00000357878.7	protein_coding	protein_coding	protein_coding	protein_coding	20	134	2	2.28969	2.68461	3.07953	1.98981e-4	1.09514e-6	0.00339113	4.3275e-5
chr16	70563962	70564050	15730087	0	+	0.465909	(0.455,0.49]	chr16	1252987	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5:ENST00000562722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	47	2	2.27492	2.684605	3.09429	0.0193827	3.75881e-5	0.0943643	8.15231e-4
chr19	39384228	39384328	17325898	0	+	0.58	(0.53,0.59]	chr19	1434772	6	UTR3	UTR3:EXON_MRNA:INTRON	SAMD4B	ENSG00000179134.15	ENST00000314471.10:ENST00000610417.4:ENST00000611159.4:ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.47	2.6845800000000004	2.89916	0.0089333	0.00890406	0.0567495	0.0565003
chr19	8488940	8489027	17220868	0	+	0.298851	(0.29,0.33]	chr19	1417708	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	33	2	2.50855	2.68457	2.86059	0.0023535	5.48907e-4	0.0222204	0.00697672
chr1	39748902	39748995	151156	0	+	0.548387	(0.53,0.59]	chr1	18833	1	CDS	CDS:UTR3:EXON_MRNA	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000474804.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.16037	2.684555	3.20874	0.0254312	0.00278422	0.117089	0.0241009
chr17	63550476	63550543	16317147	0	+	0.626866	(0.59,1]	chr17	1323629	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000582274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	33	2	2.5215	2.6844900000000003	2.84748	0.032241	0.0124539	0.135671	0.0712518
chr19	18436175	18436247	17499331	0	-	0.652778	(0.59,1]	chr19	1468109	3	CDS	CDS:UTR3:EXON_MRNA	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582770.6:ENST00000578963.5:ENST00000577916.6:ENST00000577820.5:ENST00000583816.2:ENST00000578352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.5215	2.6844900000000003	2.84748	0.032241	0.0124539	0.135671	0.0712518
chr19	55675535	55675635	17397367	0	+	0.6	(0.59,1]	chr19	1448953	1	SS5_PROX	SS5_PROX:INTRON	EPN1	ENSG00000063245.15	ENST00000270460.11:ENST00000085079.11	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.5215	2.6844900000000003	2.84748	0.032241	0.0124539	0.135671	0.0712518
chr9	92293605	92293688	10737601	0	-	0.674699	(0.59,1]	chr9	812416	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.5215	2.6844900000000003	2.84748	0.032241	0.0124539	0.135671	0.0712518
chr15	43407404	43407503	14895810	0	+	0.474747	(0.455,0.49]	chr15	1171084	9	UTR3	UTR3:EXON_MRNA	TUBGCP4	ENSG00000137822.13	ENST00000564079.6	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	1.96875	2.6844200000000003	3.40009	0.0480352	0.00120619	0.180552	0.0129255
chr19	2204163	2204262	17195481	0	+	0.606061	(0.59,1]	chr19	1412661	10	INTRON	INTRON	DOT1L	ENSG00000104885.18	ENST00000398665.8	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.59461	2.684395	2.77418	0.0259455	0.0160729	0.117079	0.0860154
chr22	50289709	50289806	18547150	0	-	0.71134	(0.59,1]	chr22	1584767	3	CDS	CDS:EXON_MRNA	PLXNB2	ENSG00000196576.16	ENST00000359337.9:ENST00000449103.5:ENST00000432455.5	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.59461	2.684395	2.77418	0.0259455	0.0160729	0.117079	0.0860154
chr16	29799044	29799114	15626683	0	+	0.571429	(0.53,0.59]	chr16	1239273	2	CDS	CDS:EXON_MRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000569636.6:ENST00000160827.9:ENST00000400751.9:ENST00000569382.2:ENST00000563666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.14885	2.6841299999999997	3.21941	0.0262993	0.00266171	0.117164	0.0240332
chr17	44876016	44876100	16560180	0	-	0.559524	(0.53,0.59]	chr17	1359772	2	CDS	CDS:UTR3:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000592576.5:ENST00000591382.5:ENST00000402521.7:ENST00000587957.1:ENST00000593200.5:ENST00000588374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.14885	2.6841299999999997	3.21941	0.0262993	0.00266171	0.117164	0.0240332
chr17	44322485	44322552	16557826	0	-	0.552239	(0.53,0.59]	chr17	1359356	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5:ENST00000586633.5:ENST00000592857.5:ENST00000591151.1:ENST00000585523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.45844	2.68411	2.90978	0.00930921	0.00857883	0.0587563	0.0552386
chr6	36855615	36855713	7682946	0	-	0.459184	(0.455,0.49]	chr6	589169	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.52734	2.6840650000000004	2.84079	0.00792433	0.00201021	0.0523592	0.0190112
chr6	67883277	67883377	7784093	0	-	0.45	(0.42,0.455]	chr6	596223	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	27	160	2	2.49186	2.683945	2.87603	1.51706e-5	2.32526e-6	3.8775e-4	8.94774e-5
chr21	45504415	45504485	18145864	0	+	0.671429	(0.59,1]	chr21	1539831	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.59364	2.68391	2.77418	0.0160729	0.0010223	0.0860154	0.0113689
chr10	99403551	99403634	11657487	0	-	0.493976	(0.49,0.53]	chr10	888029	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000489349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.64528	2.6839	2.72252	0.0202736	0.0161474	0.0984041	0.0860154
chrX	302865	302963	18549191	0	+	0.520408	(0.49,0.53]	chrX	1585413	37	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	9	57	2	2.33885	2.6838800000000003	3.02891	8.23332e-4	5.58754e-4	0.0102121	0.00709747
chr3	5180137	5180233	3278260	0	+	0.3125	(0.29,0.33]	chr3	288772	15	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	2.28605	2.6838699999999998	3.08169	0.00224889	0.00114594	0.0207945	0.0130468
chr12	56272685	56272785	13349844	0	-	0.49	(0.455,0.49]	chr12	1051002	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	52	2	2.1179	2.683835	3.24977	0.00480128	4.77546e-5	0.0370496	9.90649e-4
chr1	19122832	19122908	876116	0	-	0.565789	(0.53,0.59]	chr1	90070	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	2.29789	2.68364	3.06939	0.00674768	6.54756e-4	0.0468196	0.00860229
chr7	103483652	103483751	8963071	0	-	0.535354	(0.53,0.59]	chr7	686058	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000429186.2:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1:ENST00000473945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	60	2	2.38191	2.68361	2.98531	0.00477439	7.82534e-5	0.0368489	0.00148756
chr4	3516115	3516198	5285677	0	-	0.650602	(0.59,1]	chr4	425801	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.44587	2.68342	2.92097	0.0105307	0.0102634	0.0644466	0.0628742
chr9	35057371	35057471	10638065	0	-	0.54	(0.53,0.59]	chr9	804501	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000681537.1:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000479300.2:ENST00000466100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	53	2	2.23705	2.68324	3.12943	0.00245055	4.81557e-4	0.0221427	0.00677016
chr12	56300220	56300305	13350147	0	-	0.694118	(0.59,1]	chr12	1051084	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CS:RP11-977G19.10	ENSG00000062485.19:ENSG00000144785.8	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000552688.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5:ENST00000549318.5:ENST00000547423.5:ENST00000550996.1:ENST00000550700.1:ENST00000551441.5:ENST00000550044.1:ENST00000548360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	241	2	2.20115	2.68317	3.16519	8.57993e-4	4.31355e-6	0.0105524	1.37135e-4
chr19	6415667	6415734	17442202	0	-	0.671642	(0.59,1]	chr19	1456778	3	CDS	CDS:EXON_MRNA	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000595223.5:ENST00000594496.5:ENST00000599642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	100	2	2.04286	2.683145	3.32343	0.0108394	5.92654e-5	0.0643837	0.00118941
chr4	1211940	1212040	5278762	0	-	0.4	(0.39,0.42]	chr4	424832	6	UTR3	UTR3:EXON_MRNA	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000503594.5:ENST00000514596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	40	2	2.22094	2.6831050000000003	3.14527	0.00278158	5.33048e-4	0.0241009	0.00742114
chr14	94079415	94079513	14775434	0	-	0.408163	(0.39,0.42]	chr14	1157311	5	CDS	CDS:UTR5:EXON_MRNA:INTRON	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000555054.1:ENST00000640432.1:ENST00000555324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.49701	2.6829799999999997	2.86895	0.0339607	0.00177945	0.141431	0.0172974
chr3	41224953	41225037	3432464	0	+	0.47619	(0.455,0.49]	chr3	298534	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.52734	2.68263	2.83792	0.0110512	0.00792433	0.0665375	0.0523592
chr1	28473951	28474051	116799	0	+	0.56	(0.53,0.59]	chr1	14233	5	CDS	CDS:UTR3:EXON_MRNA	PHACTR4	ENSG00000204138.13	ENST00000632421.1:ENST00000373839.8:ENST00000493669.2:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	21	2	2.34461	2.682575	3.02054	0.0457008	0.00577011	0.168044	0.0426551
chr17	1682210	1682293	16401637	0	-	0.554217	(0.53,0.59]	chr17	1334977	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.34461	2.682575	3.02054	0.0457008	0.00577011	0.168044	0.0426551
chrX	71567667	71567752	18733086	0	+	0.588235	(0.53,0.59]	chrX	1598837	3	CDS	CDS:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000474633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	21	2	2.34461	2.682575	3.02054	0.0457008	0.00577011	0.168044	0.0426551
chr1	76700069	76700163	307199	0	+	0.56383	(0.53,0.59]	chr1	31551	4	EXON_PSEUDO	EXON_PSEUDO	TPI1P1	ENSG00000226415.1	ENST00000420977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chr16	81020187	81020276	15767680	0	+	0.573034	(0.53,0.59]	chr16	1255208	2	CDS	CDS:EXON_MRNA	CENPN	ENSG00000166451.14	ENST00000299572.9:ENST00000439957.7:ENST00000393335.7:ENST00000305850.10:ENST00000428963.6:ENST00000564669.5:ENST00000562943.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chr19	35545739	35545816	17305356	0	+	0.532468	(0.53,0.59]	chr19	1431050	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	TMEM147	ENSG00000105677.12	ENST00000593027.6:ENST00000222284.10:ENST00000392204.6:ENST00000477168.6:ENST00000595180.5:ENST00000596232.1:ENST00000595467.1:ENST00000599895.1:ENST00000392205.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chr3	48674043	48674143	4169279	0	-	0.59	(0.53,0.59]	chr3	349845	3	UTR3	UTR3:EXON_MRNA	NCKIPSD	ENSG00000213672.8	ENST00000294129.7:ENST00000416649.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chr3	142312677	142312758	4486031	0	-	0.530864	(0.53,0.59]	chr3	372799	2	CDS	CDS:EXON_MRNA	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chr6	170318547	170318643	7555356	0	+	0.541667	(0.53,0.59]	chr6	576858	12	CDS	CDS:EXON_MRNA:INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chrX	71060720	71060818	19106537	0	-	0.571429	(0.53,0.59]	chrX	1625280	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	SNX12	ENSG00000147164.12	ENST00000622259.4:ENST00000483560.1:ENST00000374274.8:ENST00000622277.4:ENST00000490561.6:ENST00000465030.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	21	2	2.35511	2.682505	3.0099	0.0445399	0.00600486	0.172163	0.042887
chr11	107791563	107791658	12584847	0	-	0.463158	(0.455,0.49]	chr11	975961	7	UTR3	UTR3:EXON_MRNA	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.27492	2.682265	3.08961	0.0193827	0.00445157	0.0943643	0.0340751
chr18	46088108	46088182	17103840	0	-	0.418919	(0.39,0.42]	chr18	1404364	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000586523.1:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	45	2	2.13033	2.6821349999999997	3.23394	0.00865856	5.30858e-5	0.0557159	0.00108035
chr8	11838448	11838509	9202066	0	+	0.557377	(0.53,0.59]	chr8	703063	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	165	2	2.62743	2.68199	2.73655	4.53326e-5	7.42983e-6	0.00104743	2.16534e-4
chr1	19173438	19173529	876691	0	-	0.505495	(0.49,0.53]	chr1	90305	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.21413	2.68194	3.14975	0.00995539	8.97896e-5	0.0621728	0.0016645
chr16	164927	165027	15480688	0	+	0.91	(0.59,1]	chr16	1224165	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBM:HBZP1	ENSG00000206177.7:ENSG00000206178.2	ENST00000472539.5:ENST00000354915.3:ENST00000496585.1	protein_coding	processed_transcript	protein_coding:unprocessed_pseudogene	processed_transcript:unprocessed_pseudogene	3	46	2	2.67996	2.68194	2.68392	0.0202468	0.00470478	0.0984041	0.0363963
chr16	23571589	23571689	15594614	0	+	0.39	(0.36,0.39]	chr16	1236627	11	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.89872	2.681845	3.46497	0.056542	0.00105709	0.19417	0.0123035
chr14	68973084	68973184	14685852	0	-	0.59	(0.53,0.59]	chr14	1150122	14	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	1.90953	2.681785	3.45404	0.0517711	1.27275e-5	0.193577	3.35074e-4
chr22	41907113	41907210	18383963	0	+	0.505155	(0.49,0.53]	chr22	1565112	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	128	2	2.39271	2.6817349999999998	2.97076	4.11094e-4	1.16267e-6	0.00604141	4.54036e-5
chr1	23962471	23962570	99144	0	+	0.323232	(0.29,0.33]	chr1	11603	7	UTR3	UTR3:EXON_MRNA	PNRC2	ENSG00000189266.13	ENST00000647887.1:ENST00000334351.8	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	2.48886	2.681725	2.87459	0.0055888	1.72733e-4	0.0419759	0.00280648
chr10	46011107	46011206	11470981	0	-	0.40404	(0.39,0.42]	chr10	874843	10	CDS	CDS:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	8	54	2	2.38186	2.68171	2.98156	0.00601449	3.09196e-5	0.0434483	6.92426e-4
chr12	885413	885509	12681424	0	+	0.520833	(0.49,0.53]	chr12	984118	9	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	65	2	2.54558	2.68167	2.81776	0.0024326	4.51958e-5	0.0228485	9.44193e-4
chr6	31642923	31643019	7661413	0	-	0.65625	(0.59,1]	chr6	584828	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000470875.5:ENST00000437771.5:ENST00000465348.5:ENST00000438149.5:ENST00000469182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	103	2	2.50644	2.681625	2.85681	0.00235278	5.2333e-4	0.0222204	0.00676474
chr8	37751625	37751715	9290009	0	+	0.488889	(0.455,0.49]	chr8	710363	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000519638.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.23479	2.68161	3.12843	0.0209335	0.00392855	0.101282	0.0322851
chr12	49994130	49994229	13327226	0	-	0.424242	(0.42,0.455]	chr12	1046334	1	CDS	CDS:EXON_MRNA	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000549342.1	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.44942	2.681575	2.91373	0.00892357	0.0016479	0.0567495	0.0163521
chr10	63902450	63902549	11534982	0	-	0.545455	(0.53,0.59]	chr10	878607	1	EXON_PSEUDO	EXON_PSEUDO	RPL7AP50	ENSG00000213609.3	ENST00000452821.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	45	2	2.37399	2.6814	2.98881	0.0126178	2.35204e-4	0.0717599	0.00356397
chr8	123194085	123194148	9588466	0	+	0.492063	(0.49,0.53]	chr8	727187	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10:ENST00000521468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	34	2	2.3642	2.681345	2.99849	0.00630123	0.00248477	0.0445415	0.0223997
chr7	44467977	44468059	8260279	0	+	0.463415	(0.455,0.49]	chr7	629216	2	EXON_PSEUDO	EXON_PSEUDO	RPL32P18	ENSG00000146677.7	ENST00000487895.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	52	2	2.59868	2.681335	2.76399	8.75629e-4	3.61596e-4	0.0106963	0.00506298
chr6	27893743	27893843	7105352	0	+	0.67	(0.59,1]	chr6	543494	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC17	ENSG00000274641.2	ENST00000616182.2	protein_coding	protein_coding	protein_coding	protein_coding	11	143	2	2.27431	2.681115	3.08792	0.00116207	8.82038e-5	0.0126313	0.00178337
chr17	44319624	44319718	16557786	0	-	0.489362	(0.455,0.49]	chr17	1359328	1	UTR3	UTR3:EXON_MRNA	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000592372.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	37	2	2.40664	2.68095	2.95526	0.0123662	2.88167e-4	0.0705839	0.00423739
chr6	30720351	30720428	7112175	0	+	0.636364	(0.59,1]	chr6	545050	1	UTR5	UTR5:EXON_MRNA:INTRON	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13	protein_coding	protein_coding	protein_coding	protein_coding	71	934	2	2.22554	2.68077	3.136	9.95574e-5	1.59771e-7	0.00196141	8.38121e-6
chr2	241353828	241353927	2467911	0	+	0.333333	(0.33,0.36]	chr2	223257	20	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.32576	2.68064	3.03552	0.0017547	0.0012034	0.0171423	0.0134762
chr11	106097701	106097801	12122398	0	+	0.41	(0.39,0.42]	chr11	933147	9	UTR3	UTR3:EXON_MRNA	AASDHPPT	ENSG00000149313.11	ENST00000278618.9:ENST00000534152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.49701	2.680345	2.86368	0.0339607	0.0101619	0.141431	0.0627153
chr6	49451548	49451631	7729321	0	-	0.39759	(0.39,0.42]	chr6	592862	2	CDS	CDS:EXON_MRNA	MMUT	ENSG00000146085.8	ENST00000274813.4	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.49701	2.680345	2.86368	0.0339607	0.0101619	0.141431	0.0627153
chr7	131397321	131397376	8534553	0	+	0.4	(0.39,0.42]	chr7	651624	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.49701	2.680345	2.86368	0.0339607	0.0101619	0.141431	0.0627153
chr12	45928655	45928755	13312707	0	-	0.48	(0.455,0.49]	chr12	1043380	1	CDS_START	CDS_START:CDS:EXON_MRNA	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000465950.5:ENST00000549162.5:ENST00000547018.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	4	26	2	2.15985	2.68027	3.20069	0.0128965	0.00285821	0.0722356	0.0245841
chr1	149812223	149812323	1286913	0	-	0.57	(0.53,0.59]	chr1	127820	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	H2BC18	ENSG00000203814.6	ENST00000545683.1:ENST00000469483.1:ENST00000369167.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	56	2	2.2596	2.68011	3.10062	0.0185443	3.70432e-5	0.0948733	8.91807e-4
chr7	127588402	127588498	8514766	0	+	0.833333	(0.59,1]	chr7	649564	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ARF5	ENSG00000004059.11	ENST00000463733.5:ENST00000415666.1:ENST00000467281.5:ENST00000000233.10:ENST00000489673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	59	2	2.50322	2.680015	2.85681	0.00863444	0.00235278	0.0556009	0.0222204
chr22	41897051	41897106	18383850	0	+	0.381818	(0.36,0.39]	chr22	1565073	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1:ENST00000463741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.336	2.679985	3.02397	0.0154226	0.00674398	0.0834369	0.0461258
chr16	18794683	18794783	15877095	0	-	0.24	[0,0.29]	chr16	1269306	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5:ENST00000562234.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	2.55853	2.6799350000000004	2.80134	0.007538	0.0049344	0.0497903	0.0379087
chr7	100092863	100092931	8949613	0	-	0.647059	(0.59,1]	chr7	683496	3	UTR3	UTR3:EXON_MRNA	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	1.86913	2.679665	3.4902	0.0194297	0.00130379	0.0973387	0.0142445
chr1	226386325	226386383	1533289	0	-	0.551724	(0.53,0.59]	chr1	153493	1	CDS	CDS:UTR3:EXON_MRNA	PARP1	ENSG00000143799.14	ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.61377	2.679595	3.74542	0.0436338	2.30148e-4	0.170594	0.00352524
chr15	78894819	78894908	15042632	0	+	0.370787	(0.36,0.39]	chr15	1183468	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	48	2	1.32543	2.67952	4.03361	0.0396011	1.71457e-6	0.152073	6.95799e-5
chr16	69693840	69693940	15725293	0	+	0.51	(0.49,0.53]	chr16	1252127	22	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	42	2	2.02795	2.6794700000000002	3.33099	0.0110299	1.59567e-4	0.0652374	0.00263091
chr8	108235025	108235102	10002645	0	-	0.38961	(0.36,0.39]	chr8	754207	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000679009.1:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	41	236	2	2.4159	2.679425	2.94295	3.72859e-5	5.27807e-8	8.97443e-4	3.2354e-6
chr3	101685872	101685928	4331705	0	-	0.446429	(0.42,0.455]	chr3	361346	2	CDS	CDS:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	33	188	2	2.34626	2.67915	3.01204	2.05517e-5	5.569e-7	5.47329e-4	2.43139e-5
chr9	112220485	112220584	10802887	0	-	0.373737	(0.36,0.39]	chr9	818409	29	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	19	95	2	2.33706	2.679105	3.02115	8.77268e-5	1.35198e-5	0.00163051	3.8737e-4
chr6	35575638	35575736	7676298	0	-	0.55102	(0.53,0.59]	chr6	588423	22	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	2.63316	2.67897	2.72478	0.00474401	0.00324675	0.0361423	0.0282494
chr10	79313680	79313773	11148584	0	+	0.419355	(0.39,0.42]	chr10	847409	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.30055	2.678525	3.0565	0.0070645	1.93131e-4	0.0477419	0.0033147
chr18	57600655	57600754	17137454	0	-	0.363636	(0.36,0.39]	chr18	1407137	1	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10	protein_coding	protein_coding	protein_coding	protein_coding	8	44	2	2.46777	2.6784749999999997	2.88918	0.00212816	4.3886e-4	0.0206577	0.00591388
chrX	23833438	23833525	19005161	0	-	0.413793	(0.39,0.42]	chrX	1617165	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOO	ENSG00000184831.14	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	2.13033	2.6784749999999997	3.22662	0.00865856	0.00257296	0.0557159	0.0229363
chr2	149570073	149570168	2932890	0	-	0.368421	(0.36,0.39]	chr2	260025	1	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	18	99	2	2.59123	2.67812	2.76501	1.56992e-4	5.91551e-6	0.00283688	1.78115e-4
chr18	31546939	31547038	16809169	0	+	0.393939	(0.39,0.42]	chr18	1386482	3	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	12	68	2	1.98503	2.678055	3.37108	0.00330114	5.21879e-6	0.028478	1.60277e-4
chr12	9239466	9239551	13198864	0	-	0.317647	(0.29,0.33]	chr12	1034442	1	EXON_SMALL	EXON_SMALL:PRIMIRNA:INTRON	A2MP1:MIR1244-3	ENSG00000256069.7:ENSG00000283429.1	ENST00000566278.6:ENST00000635744.1	miRNA	miRNA	miRNA:transcribed_unprocessed_pseudogene	miRNA:transcribed_unprocessed_pseudogene:primary_miRNA	10	45	2	2.3949	2.677895	2.96089	5.56633e-4	4.45809e-4	0.0076748	0.00600196
chr22	41906338	41906435	18383955	0	+	0.43299	(0.42,0.455]	chr22	1565112	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	30	2	2.04415	2.67788	3.31161	0.0101476	0.00186138	0.0627153	0.018635
chr5	179705681	179705758	6414204	0	+	0.454545	(0.42,0.455]	chr5	499134	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	110	2	2.36044	2.6778649999999997	2.99529	3.54843e-4	2.16599e-6	0.00538798	7.65241e-5
chr5	32380424	32380506	6519152	0	-	0.402439	(0.39,0.42]	chr5	504963	1	SS3_PROX	SS3_PROX:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	31	2	2.21029	2.6777800000000003	3.14527	0.0100911	5.33048e-4	0.0625052	0.00742114
chrX	40051724	40051820	19044895	0	-	0.395833	(0.39,0.42]	chrX	1618692	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000672265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	31	2	2.21029	2.6777800000000003	3.14527	0.0100911	5.33048e-4	0.0625052	0.00742114
chr22	19068160	19068225	18430361	0	-	0.692308	(0.59,1]	chr22	1570396	2	CDS	CDS:UTR5:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	70	2	2.4608	2.6777699999999998	2.89474	0.00407427	0.00190546	0.0324137	0.018313
chr16	2514103	2514182	15493345	0	+	0.632911	(0.59,1]	chr16	1227517	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000568562.1	protein_coding	protein_coding	protein_coding	protein_coding	7	73	2	1.49472	2.67766	3.8606	0.0371034	2.2997e-4	0.151849	0.00352524
chr1	19112609	19112695	875999	0	-	0.581395	(0.53,0.59]	chr1	90017	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000466969.1:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	42	2	2.13589	2.67765	3.21941	0.00395526	0.00266171	0.0316946	0.0240332
chr10	27134038	27134122	11423523	0	-	0.416667	(0.39,0.42]	chr10	870960	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000463270.1:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	31	2	2.30055	2.67758	3.05461	0.0070645	8.55091e-4	0.0477419	0.0105173
chr3	40312178	40312260	3429120	0	+	0.304878	(0.29,0.33]	chr3	298224	3	UTR3	UTR3:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.17855	2.67741	3.17627	0.0183673	8.41464e-5	0.0928041	0.00158584
chr15	52551633	52551733	15287504	0	-	0.27	[0,0.29]	chr15	1206631	47	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000568196.1:ENST00000563277.5:ENST00000567669.5:ENST00000569723.5:ENST00000569281.6	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.28104	2.67727	3.0735	0.0202028	0.00785095	0.0984041	0.0520241
chr12	123292607	123292707	13595044	0	-	0.32	(0.29,0.33]	chr12	1070977	36	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.22218	2.67715	3.13212	0.023782	0.00551048	0.109413	0.0414592
chr14	49894562	49894662	14276495	0	+	0.32	(0.29,0.33]	chr14	1116061	4	UTR3	UTR3:EXON_MRNA	ARF6	ENSG00000165527.7	ENST00000298316.7	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.22218	2.67715	3.13212	0.023782	0.00551048	0.109413	0.0414592
chr11	32589011	32589073	11898169	0	+	0.403226	(0.39,0.42]	chr11	908901	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.46573	2.677045	2.88836	0.0102432	0.00349672	0.062872	0.0288123
chr12	64420161	64420254	12921818	0	+	0.408602	(0.39,0.42]	chr12	1007024	2	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.46573	2.677045	2.88836	0.0102432	0.00349672	0.062872	0.0288123
chr4	82867154	82867235	5496930	0	-	0.419753	(0.39,0.42]	chr4	440275	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.46573	2.677045	2.88836	0.0102432	0.00349672	0.062872	0.0288123
chr14	55229588	55229681	14298333	0	+	0.376344	(0.36,0.39]	chr14	1117596	5	EXON_PSEUDO	EXON_PSEUDO	RP11-665C16.9	ENSG00000279392.1	ENST00000623123.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	62	2	2.09786	2.6767149999999997	3.25557	0.00658605	4.10744e-6	0.0454205	1.31763e-4
chr2	108782694	108782778	1983145	0	+	0.440476	(0.42,0.455]	chr2	188354	3	CDS	CDS:EXON_MRNA	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.93033	2.6767149999999997	3.4231	0.0505055	0.00112541	0.181202	0.0128481
chr15	72583684	72583782	15018735	0	+	0.489796	(0.455,0.49]	chr15	1180122	5	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.35644	2.67657	2.9967	0.00650423	0.00555877	0.0454205	0.0405952
chr2	27243688	27243773	1691801	0	+	0.470588	(0.455,0.49]	chr2	165815	3	UTR3	UTR3:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.35644	2.67657	2.9967	0.00650423	0.00555877	0.0454205	0.0405952
chr8	47970601	47970693	9316224	0	+	0.630435	(0.59,1]	chr8	713563	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000518680.1:ENST00000517709.1:ENST00000648554.1:ENST00000519470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	72	2	2.09833	2.676335	3.25434	0.0150311	4.06738e-4	0.0816517	0.00598202
chr9	33933489	33933567	10633551	0	-	0.602564	(0.59,1]	chr9	803835	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000474372.1:ENST00000488443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	44	2	2.50322	2.67633	2.84944	0.0128238	0.00863444	0.0719798	0.0556009
chr11	119095216	119095294	12626602	0	-	0.705128	(0.59,1]	chr11	979847	3	CDS	CDS:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	44	2	2.11894	2.67621	3.23348	0.0293157	0.00352837	0.128478	0.0298518
chr1	19106647	19106726	875932	0	-	0.506329	(0.49,0.53]	chr1	89996	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000494503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.48488	2.67599	2.8671	0.032052	0.0100489	0.133433	0.0623334
chr1	112671121	112671220	411483	0	+	0.343434	(0.33,0.36]	chr1	40540	11	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	16	71	2	1.98059	2.67599	3.37139	0.0014064	2.46591e-6	0.0144919	9.42302e-5
chr10	16593293	16593393	11391730	0	-	0.53	(0.49,0.53]	chr10	868459	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.48488	2.67599	2.8671	0.032052	0.0100489	0.133433	0.0623334
chr12	53516737	53516837	13339516	0	-	0.46	(0.455,0.49]	chr12	1049176	48	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000551087.1:ENST00000546661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.35515	2.6759250000000003	2.9967	0.0140117	0.00650423	0.0767536	0.0454205
chr12	118246669	118246766	13108953	0	+	0.618557	(0.59,1]	chr12	1023124	7	EXON_PSEUDO	EXON_PSEUDO	RPS2P5	ENSG00000240342.3	ENST00000488803.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	123	2	2.23761	2.6757850000000003	3.11396	0.00314845	6.70102e-5	0.0277515	0.00130461
chr11	32602299	32602399	11898314	0	+	0.39	(0.36,0.39]	chr11	908940	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531120.6:ENST00000524896.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	91	2	2.25777	2.67577	3.09377	8.23941e-4	1.53888e-6	0.0102141	5.75197e-5
chr1	47224198	47224298	985594	0	-	0.51	(0.49,0.53]	chr1	104060	1	SS3_PROX	SS3_PROX:INTRON	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3:ENST00000464796.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.56183	2.675725	2.78962	0.0261296	0.0129044	0.118976	0.0725185
chr1	201997318	201997396	662027	0	+	0.512821	(0.49,0.53]	chr1	66441	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5:ENST00000449524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.56183	2.675725	2.78962	0.0261296	0.0129044	0.118976	0.0725185
chr11	75010024	75010122	12021806	0	+	0.510204	(0.49,0.53]	chr11	926843	37	UTR3	UTR3:EXON_MRNA:INTRON	NEU3	ENSG00000162139.10	ENST00000529024.1:ENST00000294064.9	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.56183	2.675725	2.78962	0.0261296	0.0129044	0.118976	0.0725185
chr14	102040235	102040303	14495792	0	+	0.514706	(0.49,0.53]	chr14	1133230	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.56183	2.675725	2.78962	0.0261296	0.0129044	0.118976	0.0725185
chr20	49068714	49068768	17811577	0	+	0.5	(0.49,0.53]	chr20	1506502	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.56183	2.675725	2.78962	0.0261296	0.0129044	0.118976	0.0725185
chr7	152182395	152182494	9135385	0	-	0.494949	(0.49,0.53]	chr7	698409	18	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.26641	2.67564	3.08487	0.0190546	6.09273e-4	0.093872	0.00760626
chrX	53548187	53548273	19077325	0	-	0.523256	(0.49,0.53]	chrX	1622706	7	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	4	32	2	2.26641	2.67564	3.08487	0.0190546	6.09273e-4	0.093872	0.00760626
chr12	57063118	57063193	13353807	0	-	0.453333	(0.42,0.455]	chr12	1052225	1	CDS	CDS:UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.43733	2.67553	2.91373	0.0103896	0.00892357	0.0640167	0.0567495
chr10	5457681	5457779	10909076	0	+	0.255102	[0,0.29]	chr10	830430	8	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	2.32541	2.6755050000000002	3.0256	4.89672e-4	4.63899e-4	0.00687268	0.00614893
chr6	108212148	108212248	7883757	0	-	0.36	(0.33,0.36]	chr6	603536	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	2.17058	2.6755	3.18042	0.01664	3.92606e-4	0.0878065	0.00539371
chr9	78329452	78329543	10321094	0	+	0.538462	(0.53,0.59]	chr9	777290	5	UTR3	UTR3:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	2.35511	2.67511	2.99511	0.0445399	9.46531e-4	0.172163	0.010681
chr2	70988008	70988106	2728050	0	-	0.489796	(0.455,0.49]	chr2	243102	22	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.50904	2.6749150000000004	2.84079	0.0310515	0.00201021	0.131262	0.0190112
chr1	156135860	156135953	486134	0	+	0.655914	(0.59,1]	chr1	51287	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000675431.1:ENST00000368297.5:ENST00000473598.6:ENST00000368298.2:ENST00000498722.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	104	2	1.83568	2.674755	3.51383	0.0084257	1.11838e-4	0.0544083	0.00213742
chr13	20020714	20020813	13630994	0	+	0.323232	(0.29,0.33]	chr13	1074432	7	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.48886	2.674725	2.86059	0.0055888	5.48907e-4	0.0419759	0.00697672
chr22	20084210	20084307	18297108	0	+	0.494845	(0.49,0.53]	chr22	1553112	32	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	4	33	2	2.05119	2.6747199999999998	3.29825	0.0360743	0.00019429700000000001	0.145024	0.00332542
chr15	42531530	42531625	14892399	0	+	0.421053	(0.42,0.455]	chr15	1170513	1	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000563765.5:ENST00000349777.5:ENST00000249647.8:ENST00000564153.5:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5:ENST00000563333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.07164	2.6746600000000003	3.27768	0.0101168	1.0456e-5	0.0626311	2.87011e-4
chr3	152462683	152462783	3818505	0	+	0.3	(0.29,0.33]	chr3	325707	4	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	27	2	2.21714	2.67463	3.13212	0.00551048	0.00315975	0.0414592	0.0266443
chr20	50124662	50124761	18004577	0	-	0.686869	(0.59,1]	chr20	1526012	66	UTR3	UTR3:EXON_MRNA:INTRON	PEDS1-UBE2V1:PEDS1	ENSG00000124208.16:ENSG00000240849.11	ENST00000341698.2:ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	33	2	2.42639	2.674595	2.9228	0.0409084	0.00981698	0.163285	0.0612992
chr9	35711254	35711324	10639610	0	-	0.657143	(0.59,1]	chr9	805060	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.42639	2.674595	2.9228	0.0409084	0.00981698	0.163285	0.0612992
chr7	116506655	116506754	8475395	0	+	0.242424	[0,0.29]	chr7	647296	6	UTR3	UTR3:EXON_MRNA	CAV2	ENSG00000105971.15	ENST00000222693.5	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.55853	2.674575	2.79062	0.007538	0.00169679	0.0497903	0.01759
chr8	100920692	100920752	9976223	0	-	0.483333	(0.455,0.49]	chr8	752729	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	39	2	2.41991	2.67446	2.92901	0.00192426	0.00141135	0.0183914	0.0151901
chr1	173826686	173826786	549992	0	+	0.48	(0.455,0.49]	chr1	58413	1	CDS	CDS:EXON_MRNA	DARS2	ENSG00000117593.12	ENST00000648807.1:ENST00000648960.1:ENST00000647788.1:ENST00000647730.1:ENST00000649067.1:ENST00000649689.2:ENST00000648271.1:ENST00000647645.1:ENST00000471476.2:ENST00000648055.1:ENST00000650297.1:ENST00000648458.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.35214	2.67442	2.9967	0.0455621	0.00650423	0.168044	0.0454205
chr10	104254855	104254928	11236723	0	+	0.684932	(0.59,1]	chr10	856301	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GSTO1	ENSG00000148834.13	ENST00000470554.5:ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	33	2	2.4994	2.67442	2.84944	0.0333573	0.0128238	0.137922	0.0719798
chr6	149736470	149736560	8018981	0	-	0.444444	(0.42,0.455]	chr6	612730	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	1.71996	2.67426	3.62856	0.0542346	4.02604e-4	0.199653	0.00549837
chr7	116918862	116918962	8478176	0	+	0.32	(0.29,0.33]	chr7	647538	11	UTR3	UTR3:EXON_MRNA	CAPZA2	ENSG00000198898.14	ENST00000361183.8	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	2.14478	2.674225	3.20367	0.00445138	6.11481e-4	0.0340751	0.00818575
chr5	34924910	34924975	5930619	0	+	0.4	(0.39,0.42]	chr5	464761	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BRIX1	ENSG00000113460.13	ENST00000515798.5:ENST00000336767.6:ENST00000506023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	26	2	2.49426	2.67421	2.85416	0.0085468	0.00225069	0.0551026	0.021386
chr17	81586996	81587096	16708489	0	-	0.53	(0.49,0.53]	chr17	1377478	146	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.13501	2.6740899999999996	3.21317	0.0287874	3.08783e-4	0.128869	0.00445935
chr19	52216003	52216074	17382188	0	+	0.492958	(0.49,0.53]	chr19	1445764	1	CDS	CDS:EXON_MRNA	PPP2R1A	ENSG00000105568.18	ENST00000454220.6:ENST00000322088.11:ENST00000462990.5:ENST00000473820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.13501	2.6740899999999996	3.21317	0.0287874	3.08783e-4	0.128869	0.00445935
chr17	16382597	16382669	16141813	0	+	0.472222	(0.455,0.49]	chr17	1300660	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBB	ENSG00000170315.14	ENST00000302182.8:ENST00000535788.1:ENST00000578649.1:ENST00000395839.5:ENST00000395837.1:ENST00000614404.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	60	2	1.93086	2.67406	3.41726	0.00521832	1.55075e-5	0.0398977	3.95473e-4
chr3	195785738	195785837	4661124	0	-	0.575758	(0.53,0.59]	chr3	385270	71	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	49	2	2.62309	2.673935	2.72478	0.00324675	0.00065129300000000005	0.0282494	0.00805846
chr1	6591701	6591798	845350	0	-	0.618557	(0.59,1]	chr1	85371	11	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.16	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.11074	2.67367	3.2366	0.0305	4.06803e-4	0.130204	0.00552995
chr13	39013086	39013186	13976229	0	-	0.42	(0.39,0.42]	chr13	1096566	5	CDS	CDS:EXON_MRNA:INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	54	2	2.63229	2.673625	2.71496	7.8066e-4	1.79773e-4	0.00973486	0.00290798
chr1	109401912	109402012	1220370	0	-	0.37	(0.36,0.39]	chr1	119066	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000490870.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.48922	2.67353	2.85784	0.0110399	0.00191736	0.0652374	0.0183299
chr1	16315168	16315243	869567	0	-	0.466667	(0.455,0.49]	chr1	88611	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FBXO42	ENSG00000037637.11	ENST00000375592.8:ENST00000478089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr1	154601304	154601392	1303750	0	-	0.465909	(0.455,0.49]	chr1	131420	4	CDS	CDS:UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr11	118505855	118505954	12158974	0	+	0.484848	(0.455,0.49]	chr11	937104	36	CDS	CDS:EXON_MRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000649699.1:ENST00000534085.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr12	120184823	120184887	13579625	0	-	0.484375	(0.455,0.49]	chr12	1068783	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr14	21750268	21750366	14173872	0	+	0.479592	(0.455,0.49]	chr14	1109831	1	EXON_PSEUDO	EXON_PSEUDO	RPL4P1	ENSG00000240954.1	ENST00000496596.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr2	3498562	3498662	2492359	0	-	0.47	(0.455,0.49]	chr2	224964	13	UTR3	UTR3:EXON_MRNA	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5:ENST00000415131.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr3	32762797	32762863	3396533	0	+	0.484848	(0.455,0.49]	chr3	295397	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CNOT10	ENSG00000182973.19	ENST00000328834.9:ENST00000331889.10:ENST00000435630.5:ENST00000454516.7:ENST00000416457.5:ENST00000430408.1:ENST00000471003.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr9	121339529	121339620	10836403	0	-	0.472527	(0.455,0.49]	chr9	820982	7	UTR3	UTR3:EXON_MRNA	STOM	ENSG00000148175.13	ENST00000286713.7:ENST00000538954.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.50904	2.67348	2.83792	0.0310515	0.0110512	0.131262	0.0665375
chr6	7881611	7881707	7587971	0	-	0.364583	(0.36,0.39]	chr6	578854	2	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	111	2	2.29583	2.67345	3.05107	3.28547e-4	7.92575e-7	0.00504024	3.27936e-5
chr10	32922256	32922346	11444111	0	-	0.355556	(0.33,0.36]	chr10	872658	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	63	2	2.09934	2.6734400000000003	3.24754	0.0120497	1.75211e-6	0.0694419	6.40957e-5
chr19	12924448	12924526	17472069	0	-	0.551282	(0.53,0.59]	chr19	1463335	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5:ENST00000593021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.88327	2.67338	3.46349	0.0298124	9.2216e-4	0.129773	0.0104432
chr5	10258140	10258221	5874597	0	+	0.469136	(0.455,0.49]	chr5	461868	1	CDS	CDS:UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000423695.6:ENST00000512975.5:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1:ENST00000514674.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	59	2	2.10658	2.673355	3.24013	0.00204602	5.30989e-5	0.0193107	0.00118379
chr21	44771176	44771276	18276945	0	-	0.35	(0.33,0.36]	chr21	1550170	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000481546.1:ENST00000497630.5:ENST00000477954.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	66	2	2.08896	2.67331	3.25766	7.40159e-4	1.92518e-5	0.00886285	5.18662e-4
chr9	131146128	131146216	10495823	0	+	0.568182	(0.53,0.59]	chr9	793247	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	253	2	2.53454	2.673285	2.81203	8.94047e-6	1.35532e-6	2.75919e-4	5.16469e-5
chr7	157192267	157192367	8635977	0	+	0.45	(0.42,0.455]	chr7	659694	31	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	11	69	2	2.0038	2.673165	3.34253	0.00379067	6.51228e-6	0.0317138	1.93775e-4
chr11	57816308	57816406	11953239	0	+	0.387755	(0.36,0.39]	chr11	914890	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1:ENST00000525821.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	50	2	2.63804	2.67288	2.70772	8.58673e-4	1.92058e-4	0.0105583	0.00305488
chr14	100278298	100278398	14487345	0	+	0.35	(0.33,0.36]	chr14	1131912	8	UTR3	UTR3:EXON_MRNA	YY1	ENSG00000100811.14	ENST00000262238.10:ENST00000623799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	2.57153	2.672845	2.77416	0.00330025	8.34192e-4	0.028478	0.00978328
chr4	102888226	102888326	5014937	0	+	0.36	(0.33,0.36]	chr4	408750	9	UTR3	UTR3:EXON_MRNA	CISD2	ENSG00000145354.12	ENST00000273986.10:ENST00000643561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	2.57153	2.672845	2.77416	0.00330025	8.34192e-4	0.028478	0.00978328
chr16	70252820	70252906	15996869	0	-	0.55814	(0.53,0.59]	chr16	1284592	1	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	2.62081	2.672795	2.72478	0.00324675	3.14057e-4	0.0282494	0.00452711
chr6	170398270	170398370	7556163	0	+	0.39	(0.36,0.39]	chr6	576907	23	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.81435	2.672645	3.53094	0.0305588	0.0302191	0.130016	0.129773
chr2	47359686	47359777	2633168	0	-	0.494505	(0.49,0.53]	chr2	237014	3	EXON_SMALL	EXON_SMALL	RN7SKP119	ENSG00000222685.1	ENST00000410753.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	7	51	2	2.46958	2.672605	2.87563	0.00344146	1.52968e-4	0.0292838	0.00254995
chr1	194189555	194189654	640477	0	+	0.484848	(0.455,0.49]	chr1	64400	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-563D10.1:EEF1A1P14	ENSG00000227240.2:ENSG00000233057.1	ENST00000656143.1:ENST00000655677.1:ENST00000454538.1:ENST00000421195.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	6	47	2	1.92777	2.672515	3.41726	0.0286531	1.55075e-5	0.128685	3.95473e-4
chr9	93471222	93471304	10362358	0	+	0.487805	(0.455,0.49]	chr9	780094	2	CDS	CDS:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	1.68956	2.672505	3.65545	0.0381365	3.50134e-4	0.155455	0.0049086
chrX	154766215	154766307	18918686	0	+	0.51087	(0.49,0.53]	chrX	1612266	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DKC1	ENSG00000130826.18	ENST00000620277.4:ENST00000369550.10:ENST00000413910.5:ENST00000473552.1:ENST00000452771.5:ENST00000437719.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	36	2	2.01174	2.67249	3.33324	0.00708517	0.00162947	0.0478761	0.0169972
chr20	56386348	56386440	18019854	0	-	0.48913	(0.455,0.49]	chr20	1527188	2	CDS	CDS:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5:ENST00000420474.5:ENST00000422322.5:ENST00000456249.5:ENST00000451915.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.65352	2.6720249999999997	2.69053	0.0182983	0.00143499	0.0925808	0.0147046
chr3	13323370	13323432	4046262	0	-	0.629032	(0.59,1]	chr3	339540	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	2.36593	2.6719749999999998	2.97802	0.0141097	0.00133365	0.077233	0.0139317
chr17	42315550	42315647	16547437	0	-	0.350515	(0.33,0.36]	chr17	1357253	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000462269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	45	2	1.81756	2.67195	3.52634	0.0223533	7.28639e-6	0.106046	2.13219e-4
chr19	40751408	40751481	17330803	0	+	0.452055	(0.42,0.455]	chr19	1436128	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	38	2	2.0322	2.6719049999999998	3.31161	0.00428687	0.00186138	0.0333388	0.018635
chrX	30630561	30630649	18640864	0	+	0.568182	(0.53,0.59]	chrX	1590568	4	EXON_PSEUDO	EXON_PSEUDO	FTLP2	ENSG00000232368.1	ENST00000431458.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	35	2	2.65894	2.67163	2.68432	0.0193255	0.00118971	0.0943643	0.0128045
chr3	5180040	5180137	3278259	0	+	0.391753	(0.39,0.42]	chr3	288772	14	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.38186	2.6715850000000003	2.96131	0.00601449	9.04431e-5	0.0434483	0.00167558
chr16	30445727	30445800	15914774	0	-	0.520548	(0.49,0.53]	chr16	1275425	1	UTR5	UTR5:EXON_MRNA	SEPHS2	ENSG00000179918.19	ENST00000478753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.64528	2.67137	2.69746	0.0202736	0.00380414	0.0984041	0.0317723
chr7	129018079	129018157	9060817	0	-	0.5	(0.49,0.53]	chr7	691875	1	CDS	CDS:UTR5:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.64528	2.67137	2.69746	0.0202736	0.00380414	0.0984041	0.0317723
chr22	21642959	21643058	18303271	0	+	0.666667	(0.59,1]	chr22	1554229	2	CDS	CDS:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5:ENST00000466935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	109	2	2.53755	2.67136	2.80517	0.00142129	3.58391e-4	0.0152931	0.00501992
chr21	21487664	21487764	18069980	0	+	0.41	(0.39,0.42]	chr21	1532587	98	INTRON	INTRON	NCAM2	ENSG00000154654.15	ENST00000400546.6:ENST00000284894.8	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.22707	2.67128	3.11549	0.00574688	0.00403491	0.0426551	0.032143
chr3	33142941	33143039	3397821	0	+	0.469388	(0.455,0.49]	chr3	295508	6	UTR3	UTR3:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	42	255	2	2.55151	2.67127	2.79103	5.03547e-6	3.81513e-7	1.70909e-4	1.75037e-5
chr5	38942103	38942203	6544699	0	-	0.44	(0.42,0.455]	chr5	507042	43	UTR3	UTR3:EXON_MRNA	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	2.15137	2.671075	3.19078	0.0123864	0.00310864	0.07101	0.0274272
chr9	92210506	92210606	10736714	0	-	0.38	(0.36,0.39]	chr9	812217	4	UTR3	UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	109	2	2.25456	2.670965	3.08737	5.90211e-4	5.76191e-7	0.00799891	2.49975e-5
chr5	75358656	75358741	6037146	0	+	0.4	(0.39,0.42]	chr5	473653	1	CDS	CDS:UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000509085.5:ENST00000511986.1:ENST00000514315.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	48	2	2.58366	2.67096	2.75826	0.00103132	3.97696e-4	0.0121443	0.0054589
chr16	16141379	16141478	15568755	0	+	0.515152	(0.49,0.53]	chr16	1232868	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	1.99044	2.670885	3.35133	0.0435903	0.00150139	0.170594	0.0152367
chr19	18569103	18569198	17258788	0	+	0.494737	(0.49,0.53]	chr19	1425532	6	UTR3	UTR3:EXON_MRNA	KXD1	ENSG00000105700.11	ENST00000539106.5:ENST00000540691.5:ENST00000222307.9:ENST00000601630.5:ENST00000595073.5:ENST00000602094.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.99044	2.670885	3.35133	0.0435903	0.00150139	0.170594	0.0152367
chr6	31669835	31669926	7116088	0	+	0.56044	(0.53,0.59]	chr6	545975	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2:ENST00000409691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	119	2	2.02242	2.67087	3.31932	8.6696e-4	2.84671e-6	0.0106483	9.64791e-5
chr14	101766059	101766158	14493251	0	+	0.414141	(0.39,0.42]	chr14	1132783	9	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000557268.5:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	57	2	2.42665	2.670865	2.91508	4.41174e-4	3.33956e-4	0.0062930699999999996	0.00472923
chr8	38260661	38260760	9292749	0	+	0.454545	(0.42,0.455]	chr8	710795	2	UTR3	UTR3:EXON_MRNA:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000517385.5:ENST00000529845.5:ENST00000520176.5:ENST00000528613.1:ENST00000526071.1:ENST00000529872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	38	2	2.4279	2.670815	2.91373	0.00892357	9.43793e-4	0.0567495	0.0106637
chr3	49362489	49362549	4174099	0	-	0.516667	(0.49,0.53]	chr3	350901	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	2.60116	2.670725	2.74029	0.0056515	3.42161e-4	0.0422191	0.00482279
chr12	54232374	54232473	13342850	0	-	0.424242	(0.42,0.455]	chr12	1049602	10	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	2.50714	2.670545	2.83395	0.00122903	6.25227e-4	0.0130835	0.00830005
chr3	183754205	183754285	3946658	0	+	0.4125	(0.39,0.42]	chr3	331508	2	CDS	CDS:EXON_MRNA	YEATS2	ENSG00000163872.16	ENST00000305135.10	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.91489	2.670495	3.4261	0.0197788	0.00107164	0.0960939	0.0118238
chr11	75572383	75572483	12023394	0	+	0.52	(0.49,0.53]	chr11	927027	4	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000649490.1:ENST00000358171.8:ENST00000524558.5:ENST00000525876.1:ENST00000526638.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	105	2	2.4234	2.670455	2.91751	1.51476e-4	1.17694e-5	0.00275508	3.1402e-4
chr4	121822564	121822646	5626331	0	-	0.47561	(0.455,0.49]	chr4	448561	3	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.59868	2.670395	2.74211	0.00330545	3.61596e-4	0.028478	0.00506298
chr1	202005616	202005716	662121	0	+	0.57	(0.53,0.59]	chr1	66475	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RNPEP	ENSG00000176393.11	ENST00000295640.9:ENST00000367286.7:ENST00000471105.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	27	2	2.0404	2.669575	3.29875	0.0362529	0.00191422	0.148525	0.018324
chr14	102027618	102027689	14495639	0	+	0.549296	(0.53,0.59]	chr14	1133170	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000647119.1:ENST00000554854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.0404	2.669575	3.29875	0.0362529	0.00191422	0.148525	0.018324
chr19	3547454	3547547	17427592	0	-	0.569892	(0.53,0.59]	chr19	1454103	1	CDS	CDS:UTR3:EXON_MRNA	MFSD12	ENSG00000161091.14	ENST00000355415.7:ENST00000588918.5:ENST00000389395.7:ENST00000589995.1:ENST00000585814.1:ENST00000592652.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.0404	2.669575	3.29875	0.0362529	0.00191422	0.148525	0.018324
chr7	152176573	152176668	9135325	0	-	0.536842	(0.53,0.59]	chr7	698399	5	CDS	CDS:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.0404	2.669575	3.29875	0.0362529	0.00191422	0.148525	0.018324
chr12	64448131	64448230	12922122	0	+	0.393939	(0.39,0.42]	chr12	1007119	1	UTR3	UTR3:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.01081	2.66946	3.32811	0.0207537	0.00182819	0.100574	0.0183913
chr10	100364326	100364426	11219503	0	+	0.41	(0.39,0.42]	chr10	853930	35	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	1.50896	2.669345	3.82973	0.052263	1.3728e-4	0.194473	0.00232973
chr11	32934436	32934536	11899071	0	+	0.42	(0.39,0.42]	chr11	909001	28	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.34349	2.66928	2.99507	0.0169272	0.00637824	0.0890655	0.0449937
chr16	69698435	69698534	15725343	0	+	0.414141	(0.39,0.42]	chr16	1252140	22	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.34349	2.66928	2.99507	0.0169272	0.00637824	0.0890655	0.0449937
chr19	58548739	58548776	17413341	0	+	0.594595	(0.59,1]	chr19	1451206	1	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000601150.5:ENST00000597995.1:ENST00000597136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	2.24397	2.66926	3.09455	0.0206682	7.92671e-4	0.0997234	0.00933379
chr1	150235971	150236063	1288601	0	-	0.608696	(0.59,1]	chr1	128171	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000436748.6:ENST00000369114.9:ENST00000369115.3:ENST00000534220.1:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	12	149	2	2.47866	2.669195	2.85973	7.1836e-4	2.15772e-4	0.00903729	0.00333905
chr9	127789735	127789831	10476008	0	+	0.552083	(0.53,0.59]	chr9	789391	3	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	3	27	2	2.0289	2.669165	3.30943	0.0373899	0.0018255	0.146698	0.0183913
chr1	155717005	155717066	484361	0	+	0.57377	(0.53,0.59]	chr1	50947	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000496863.5:ENST00000465375.5:ENST00000462002.5:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000471523.1:ENST00000608852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	27	2	2.54844	2.66912	2.7898	0.0128364	0.00663226	0.0719798	0.0461575
chr19	41305645	41305699	17334321	0	+	0.537037	(0.53,0.59]	chr19	1436793	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.54844	2.66912	2.7898	0.0128364	0.00663226	0.0719798	0.0461575
chr9	36211602	36211674	10249963	0	+	0.583333	(0.53,0.59]	chr9	771378	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CLTA	ENSG00000122705.17	ENST00000433436.6:ENST00000538225.5:ENST00000540080.5:ENST00000345519.10:ENST00000464497.5:ENST00000470744.5:ENST00000242285.10:ENST00000396603.6:ENST00000466396.5:ENST00000493185.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	27	2	2.54844	2.66912	2.7898	0.0128364	0.00663226	0.0719798	0.0461575
chr12	54231974	54232074	13342846	0	-	0.44	(0.42,0.455]	chr12	1049602	6	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	34	2	2.22933	2.669035	3.10874	0.0102262	5.40397e-4	0.062872	0.00688813
chr9	78329726	78329818	10321097	0	+	0.391304	(0.39,0.42]	chr9	777290	8	UTR3	UTR3:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.44959	2.668975	2.88836	0.0102432	0.00167534	0.062872	0.0164993
chr12	119680724	119680824	13114519	0	+	0.46	(0.455,0.49]	chr12	1023559	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKAB1	ENSG00000111725.11	ENST00000541640.5:ENST00000229328.10:ENST00000540121.5:ENST00000542698.1:ENST00000537057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	48	2	2.45014	2.66897	2.8878	0.00397453	1.42924e-4	0.0322851	0.00240945
chr6	31624449	31624522	7115765	0	+	0.561644	(0.53,0.59]	chr6	545820	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	79	2	1.53214	2.668705	3.80527	0.0250428	9.95548e-7	0.116782	3.97538e-5
chr1	205718080	205718179	1462036	0	-	0.323232	(0.29,0.33]	chr1	147460	54	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.34203	2.6686449999999997	2.99526	0.010113	2.55279e-4	0.0626311	0.00383691
chr11	110231479	110231576	12597171	0	-	0.371134	(0.36,0.39]	chr11	976511	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5:ENST00000533961.1:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	2.336	2.6685749999999997	3.00115	0.0154226	0.0012486	0.0834369	0.0137762
chr17	35723699	35723795	16207499	0	+	0.447917	(0.42,0.455]	chr17	1309154	1	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	56	2	2.16214	2.66836	3.17458	0.00696724	2.16935e-5	0.0474632	5.17607e-4
chr12	48936894	48936992	13322608	0	-	0.377551	(0.36,0.39]	chr12	1045238	13	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.63825	2.6683	3.69835	0.0311278	3.2708e-4	0.130473	0.00502339
chr22	21761948	21762047	18442370	0	-	0.333333	(0.33,0.36]	chr22	1572508	24	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.63456	2.668205	2.70185	0.00707461	0.00121183	0.0478528	0.0129756
chr2	86144267	86144367	2772779	0	-	0.52	(0.49,0.53]	chr2	246308	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.81659	2.6682	3.51981	0.0376859	6.88328e-4	0.147713	0.00876781
chr2	61490708	61490776	2690479	0	-	0.397059	(0.39,0.42]	chr2	240357	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	2.149	2.66819	3.18738	0.0149155	7.15306e-5	0.0812412	0.00137393
chr11	62833051	62833131	12411452	0	-	0.525	(0.49,0.53]	chr11	961770	1	CDS	CDS:EXON_MRNA	WDR74	ENSG00000133316.16	ENST00000536401.1:ENST00000278856.9:ENST00000311713.11:ENST00000525239.5:ENST00000529106.5:ENST00000525752.5:ENST00000544831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	2.21702	2.6679700000000004	3.11892	0.00959574	0.00398244	0.0603269	0.0322851
chrX	154477943	154478043	19278450	0	-	0.58	(0.53,0.59]	chrX	1638439	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LAGE3	ENSG00000196976.7	ENST00000357360.4	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	2.49112	2.66785	2.84458	0.00129901	5.21436e-4	0.0142093	0.00674101
chr14	30889882	30889974	14201304	0	+	0.369565	(0.36,0.39]	chr14	1112921	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COCH	ENSG00000100473.18	ENST00000216361.9:ENST00000555117.2:ENST00000396618.9:ENST00000644874.2:ENST00000475087.5:ENST00000460581.6:ENST00000643575.1:ENST00000643697.1:ENST00000468826.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.56782	2.6678	2.76778	0.00659672	0.00365703	0.0460001	0.0307238
chr14	102005981	102006075	14495387	0	+	0.382979	(0.36,0.39]	chr14	1133069	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000645114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	2.56782	2.6678	2.76778	0.00659672	0.00365703	0.0460001	0.0307238
chr1	42660861	42660904	161028	0	+	0.348837	(0.33,0.36]	chr1	20170	1	CDS	CDS:UTR3:EXON_MRNA	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000677900.1:ENST00000676675.1:ENST00000304979.8:ENST00000678193.1:ENST00000678803.1:ENST00000678333.1:ENST00000677926.1:ENST00000677307.1:ENST00000440068.6:ENST00000677356.1:ENST00000679245.1:ENST00000678308.1:ENST00000678076.1:ENST00000677312.1:ENST00000677219.1:ENST00000436387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.07736	2.66778	3.2582	0.0442037	0.00230915	0.172163	0.0211205
chr6	122443449	122443549	7923714	0	-	0.24	[0,0.29]	chr6	606802	2	UTR3	UTR3:EXON_MRNA	SERINC1	ENSG00000111897.7	ENST00000339697.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.15488	2.6675199999999997	3.18016	0.0436536	8.52953e-5	0.170594	0.0016017
chr5	10680016	10680115	6447545	0	-	0.525253	(0.49,0.53]	chr5	502258	9	UTR3	UTR3:EXON_MRNA	DAP	ENSG00000112977.16	ENST00000230895.11	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.7294	2.6670800000000003	3.60476	0.0216372	4.52633e-4	0.103121	0.00642319
chr17	82487986	82488057	16383723	0	+	0.605634	(0.59,1]	chr17	1332683	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NARF	ENSG00000141562.18	ENST00000390006.8:ENST00000345415.11:ENST00000412079.6:ENST00000374611.9:ENST00000457415.7:ENST00000577812.5:ENST00000582907.5:ENST00000309794.16:ENST00000584445.5:ENST00000584965.1:ENST00000584513.1:ENST00000583908.1:ENST00000578820.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	2.0452	2.666905	3.28861	0.0179494	0.0028753	0.0939469	0.0256141
chr15	89201671	89201768	15434480	0	-	0.474227	(0.455,0.49]	chr15	1220451	7	EXON_PSEUDO	EXON_PSEUDO	RP11-326A19.5	ENSG00000259948.2	ENST00000563131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	31	2	2.12994	2.66671	3.20348	0.0304832	3.27782e-4	0.130204	0.0046686
chr19	55673933	55673968	17397354	0	+	0.457143	(0.455,0.49]	chr19	1448948	1	CDS	CDS:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.12994	2.66671	3.20348	0.0304832	3.27782e-4	0.130204	0.0046686
chr1	226361459	226361541	1533015	0	-	0.353659	(0.33,0.36]	chr1	153417	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000491816.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	48	2	2.49264	2.66631	2.83998	5.92122e-4	2.04094e-4	0.0080222	0.0032041
chr11	118601728	118601821	12159745	0	+	0.387097	(0.36,0.39]	chr11	937279	1	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	2.06832	2.6662299999999997	3.26414	0.0122123	4.42599e-5	0.0702898	9.29425e-4
chr1	40423137	40423231	154047	0	+	0.521277	(0.49,0.53]	chr1	19281	12	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	2.54558	2.666205	2.78683	0.0024326	2.60854e-4	0.0228485	0.00391395
chr1	108937161	108937247	1217926	0	-	0.465116	(0.455,0.49]	chr1	118631	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	AKNAD1:CLCC1	ENSG00000162641.20:ENSG00000121940.16	ENST00000357393.6:ENST00000675018.1:ENST00000369968.7:ENST00000674992.1:ENST00000675001.1:ENST00000369969.7:ENST00000356970.6:ENST00000369976.5:ENST00000473062.1:ENST00000482889.1:ENST00000675128.1:ENST00000675571.1:ENST00000675650.1:ENST00000369970.8:ENST00000674561.1:ENST00000675451.1:ENST00000675654.1:ENST00000675790.1:ENST00000675584.1:ENST00000676392.1:ENST00000676454.1:ENST00000674849.1:ENST00000675956.1:ENST00000302500.5:ENST00000675508.1:ENST00000676306.1:ENST00000675247.1:ENST00000348264.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	34	2	2.26324	2.6661900000000003	3.06914	0.00868189	6.6649e-4	0.0558093	0.00820018
chr8	73946729	73946820	9893789	0	-	0.373626	(0.36,0.39]	chr8	747928	1	CDS	CDS:EXON_MRNA:INTRON	ELOC	ENSG00000154582.17	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000622804.1:ENST00000520210.1:ENST00000519487.5:ENST00000284811.12:ENST00000522337.5:ENST00000523815.5:ENST00000519082.5	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.32678	2.6661799999999998	3.00558	0.0193538	2.21724e-4	0.0943643	0.00341828
chr17	43290481	43290580	16552829	0	-	0.666667	(0.59,1]	chr17	1358317	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	3	44	2	2.04362	2.666115	3.28861	0.036186	0.0028753	0.145024	0.0256141
chr11	46753403	46753497	12383580	0	-	0.510638	(0.49,0.53]	chr11	956017	2	CDS	CDS:EXON_MRNA:PRIMIRNA	CKAP5:MIR5582	ENSG00000175216.15:ENSG00000263540.1	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000579697.1:ENST00000527333.5:ENST00000526876.2	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	8	57	2	2.54558	2.66608	2.78658	0.0024326	1.13193e-4	0.0228485	0.0020093
chr21	45505357	45505431	18145875	0	+	0.77027	(0.59,1]	chr21	1539837	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.87624	2.66602	3.4558	0.0194045	1.35447e-4	0.0944333	0.00231202
chr1	160297582	160297682	1328759	0	-	0.46	(0.455,0.49]	chr1	136020	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000545284.1:ENST00000647899.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	1.68956	2.666015	3.64247	0.0381365	2.341e-5	0.155455	5.54056e-4
chr18	196701	196767	16716048	0	+	0.454545	(0.42,0.455]	chr18	1379113	2	CDS	CDS:UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	47	2	2.51988	2.66594	2.812	0.00300574	2.25472e-4	0.0267032	0.00346549
chr2	189923432	189923530	2274546	0	+	0.44898	(0.42,0.455]	chr2	206588	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	7	47	2	2.51988	2.66594	2.812	0.00300574	2.25472e-4	0.0267032	0.00346549
chr7	127652283	127652373	8514929	0	+	0.611111	(0.59,1]	chr7	649640	2	UTR5	UTR5:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	184	2	2.44821	2.665825	2.88344	2.63483e-4	1.60081e-4	0.00427022	0.00263739
chr5	60459548	60459648	6606156	0	-	0.46	(0.455,0.49]	chr5	510608	110	INTRON	INTRON	PDE4D	ENSG00000113448.19	ENST00000502484.6:ENST00000509355.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	72	2	1.8078	2.665775	3.52375	0.00913341	1.61919e-6	0.0579028	5.99053e-5
chr19	41869180	41869214	17336880	0	+	0.5	(0.49,0.53]	chr19	1437282	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	RPS19:MIR6797	ENSG00000105372.8:ENSG00000276926.1	ENST00000598742.6:ENST00000600467.6:ENST00000221975.6:ENST00000593863.5:ENST00000598399.1:ENST00000621706.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	11	78	2	2.33818	2.6655100000000003	2.99284	0.00154513	1.30254e-5	0.016451	3.42469e-4
chr1	108635547	108635646	394939	0	+	0.333333	(0.33,0.36]	chr1	38052	5	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	80	2	2.19355	2.66545	3.13735	0.00302788	1.05117e-6	0.026885	4.17074e-5
chr16	56477204	56477304	15679005	0	+	0.5	(0.49,0.53]	chr16	1246383	11	UTR3	UTR3:EXON_MRNA	OGFOD1	ENSG00000087263.17	ENST00000566157.6	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.38683	2.6654299999999997	2.94403	0.012654	0.00122634	0.0718207	0.0130695
chr5	10402532	10402607	5875203	0	+	0.44	(0.42,0.455]	chr5	461977	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	74	2	2.61712	2.665405	2.71369	1.85391e-4	9.10309e-5	0.00322183	0.0016818
chr2	30259642	30259739	1706805	0	+	0.484536	(0.455,0.49]	chr2	167573	22	UTR3	UTR3:EXON_MRNA:INTRON	LBH	ENSG00000213626.13	ENST00000395323.9:ENST00000404397.5	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	2.40166	2.665335	2.92901	0.00141135	6.27085e-4	0.0151901	0.00779876
chr21	29062327	29062415	18202001	0	-	0.454545	(0.42,0.455]	chr21	1544724	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2:ENST00000480359.1:ENST00000475205.1:ENST00000431234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	106	2	1.81492	2.66533	3.51574	0.00912508	8.28915e-8	0.0578605	4.76039e-6
chr1	205620018	205620109	1461624	0	-	0.472527	(0.455,0.49]	chr1	147411	2	CDS	CDS:EXON_MRNA	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9:ENST00000289703.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.12994	2.6653149999999997	3.20069	0.0304832	0.00285821	0.130204	0.0245841
chr2	85320786	85320885	2770118	0	-	0.424242	(0.42,0.455]	chr2	245643	29	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.36247	2.665175	2.96788	0.0462889	0.00109784	0.176878	0.0119666
chrX	80929781	80929875	18749178	0	+	0.446809	(0.42,0.455]	chrX	1600028	4	EXON_PSEUDO	EXON_PSEUDO	VDAC1P1	ENSG00000073905.8	ENST00000439229.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	25	2	2.36247	2.665175	2.96788	0.0462889	0.00109784	0.176878	0.0119666
chr12	93575749	93575849	13019802	0	+	0.34	(0.33,0.36]	chr12	1013520	2	UTR3	UTR3:EXON_MRNA:INTRON	SOCS2	ENSG00000120833.14	ENST00000340600.6:ENST00000549206.5:ENST00000549122.5:ENST00000622746.4:ENST00000548537.1:ENST00000551556.2:ENST00000551883.1:ENST00000549510.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.07736	2.6650400000000003	3.25272	0.0442037	2.63256e-4	0.172163	0.00393206
chr1	42926978	42927040	966979	0	-	0.66129	(0.59,1]	chr1	101868	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1:ENST00000475162.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	64	2	1.96394	2.66492	3.3659	0.0453144	2.1483e-4	0.174798	0.00332687
chr2	230819395	230819494	2422079	0	+	0.313131	(0.29,0.33]	chr2	218082	8	UTR3	UTR3:EXON_MRNA	CAB39	ENSG00000135932.11	ENST00000258418.10	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.99415	2.6647950000000002	3.33544	0.0333928	0.0016889	0.140128	0.0165476
chr7	138583924	138583999	8563541	0	+	0.333333	(0.33,0.36]	chr7	653327	2	CDS	CDS:EXON_MRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.00765	2.6646099999999997	3.32157	0.0287001	1.77615e-4	0.128757	0.00287736
chr6	125277101	125277170	7932932	0	-	0.434783	(0.42,0.455]	chr6	607261	1	CDS	CDS:UTR3:EXON_MRNA	HDDC2	ENSG00000111906.18	ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000609021.1:ENST00000608461.1:ENST00000608532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.86513	2.66449	3.46385	0.0357107	7.26611e-5	0.147298	0.00139386
chr5	132756096	132756193	6836938	0	-	0.484536	(0.455,0.49]	chr5	523097	2	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.35972	2.664485	2.96925	0.00698725	0.0058634	0.0473262	0.0427941
chr2	74215121	74215219	1891750	0	+	0.367347	(0.36,0.39]	chr2	179209	10	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	39	2	2.38112	2.664465	2.94781	0.0031815	3.10006e-4	0.0279343	0.0044733
chr1	160305515	160305598	1328844	0	-	0.409639	(0.39,0.42]	chr1	136038	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1:ENST00000481522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	2.62301	2.66446	2.70591	0.0185716	6.74579e-4	0.0932453	0.00826103
chr1	27207025	27207121	112124	0	+	0.416667	(0.39,0.42]	chr1	13534	2	EXON_PSEUDO	EXON_PSEUDO	NPM1P39	ENSG00000225159.1	ENST00000449818.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	21	2	1.99911	2.6644550000000002	3.3298	0.0477207	0.00165391	0.17993	0.0163614
chr7	76064338	76064438	8342383	0	+	0.65	(0.59,1]	chr7	636250	1	CDS	CDS:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000432020.2:ENST00000424167.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	157	2	2.18066	2.66426	3.14786	0.00401624	1.29182e-5	0.0324137	3.39785e-4
chr2	177541261	177541360	2230181	0	+	0.373737	(0.36,0.39]	chr2	203559	32	UTR3	UTR3:EXON_MRNA:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681891.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.38564	2.66425	2.94286	0.0476159	0.00128446	0.17993	0.0136229
chr2	210432916	210433014	3145321	0	-	0.387755	(0.36,0.39]	chr2	277990	18	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.38564	2.66425	2.94286	0.0476159	0.00128446	0.17993	0.0136229
chr21	29326248	29326344	18089875	0	+	0.375	(0.36,0.39]	chr21	1533699	3	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.38564	2.66425	2.94286	0.0476159	0.00128446	0.17993	0.0136229
chr15	41279888	41279988	14885230	0	+	0.41	(0.39,0.42]	chr15	1169243	6	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	18	96	2	2.26946	2.6641	3.05874	1.77207e-4	8.80979e-6	0.00287315	2.72329e-4
chr7	121297044	121297143	8496840	0	+	0.222222	[0,0.29]	chr7	648451	15	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	15	58	2	1.74207	2.66398	3.58589	0.00924965	1.00742e-6	0.0586023	4.01909e-5
chr1	156320838	156320931	1314148	0	-	0.408602	(0.39,0.42]	chr1	133439	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	68	2	1.92471	2.66393	3.40315	0.00446637	4.09541e-6	0.0347231	1.31567e-4
chr8	127740680	127740769	9612677	0	+	0.550562	(0.53,0.59]	chr8	728498	4	CDS	CDS:EXON_MRNA	MYC	ENSG00000136997.21	ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding	10	68	2	2.19838	2.6639049999999997	3.12943	8.59983e-4	4.81557e-4	0.0100335	0.00677016
chr10	100552821	100552921	11220807	0	+	0.48	(0.455,0.49]	chr10	854069	48	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.40664	2.663815	2.92099	0.0123662	0.00138399	0.0705839	0.0143168
chr19	18177979	18178048	17257718	0	+	0.478261	(0.455,0.49]	chr19	1425252	2	UTR3	UTR3:EXON_MRNA	AC007192.4:IFI30	ENSG00000268173.3:ENSG00000216490.4	ENST00000593731.1:ENST00000407280.4:ENST00000600463.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.40664	2.663815	2.92099	0.0123662	0.00138399	0.0705839	0.0143168
chr4	150851980	150852076	5731373	0	-	0.395833	(0.39,0.42]	chr4	452901	2	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.13132	2.6635999999999997	3.19588	0.02908	0.00321212	0.127648	0.0280721
chr10	43407616	43407716	11461972	0	-	0.37	(0.36,0.39]	chr10	873975	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.1437	2.66359	3.18348	0.0340515	0.00310315	0.141465	0.0263402
chr18	21865464	21865564	16779503	0	+	0.37	(0.36,0.39]	chr18	1384234	9	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.1437	2.66359	3.18348	0.0340515	0.00310315	0.141465	0.0263402
chr9	100321682	100321771	10773928	0	-	0.370787	(0.36,0.39]	chr9	815522	1	CDS	CDS:EXON_MRNA	TEX10	ENSG00000136891.14	ENST00000535814.5:ENST00000374902.9	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.1437	2.66359	3.18348	0.0340515	0.00310315	0.141465	0.0263402
chrX	74585763	74585862	19117460	0	-	0.383838	(0.36,0.39]	chrX	1626323	29	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.1437	2.66359	3.18348	0.0340515	0.00310315	0.141465	0.0263402
chr11	118397429	118397528	12157864	0	+	0.363636	(0.36,0.39]	chr11	936937	11	UTR3	UTR3:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.02118	2.663545	3.30591	0.0251625	1.89047e-4	0.117055	0.003022
chr16	2771303	2771357	15494998	0	+	0.388889	(0.36,0.39]	chr16	1227824	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1:ENST00000573583.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	31	2	2.02118	2.663545	3.30591	0.0251625	1.89047e-4	0.117055	0.003022
chr2	215334918	215335004	2377134	0	+	0.383721	(0.36,0.39]	chr2	213545	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000446622.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	31	2	2.02118	2.663545	3.30591	0.0251625	1.89047e-4	0.117055	0.003022
chr12	51242458	51242552	12876226	0	+	0.457447	(0.455,0.49]	chr12	1000615	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.58479	2.66345	2.74211	0.00330545	0.00200187	0.028478	0.0189555
chr1	229323662	229323760	1541546	0	-	0.265306	[0,0.29]	chr1	154303	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	36	2	2.03267	2.663175	3.29368	0.0131453	4.04464e-5	0.0733537	8.69119e-4
chr7	12369640	12369737	8683363	0	-	0.350515	(0.33,0.36]	chr7	664007	2	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	2.54538	2.6631650000000002	2.78095	0.00388614	0.00259294	0.0322851	0.0229695
chr1	45511162	45511245	978296	0	-	0.506024	(0.49,0.53]	chr1	103084	4	UTR3	UTR3:EXON_MRNA	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	28	176	2	2.41141	2.66304	2.91467	2.40965e-5	1.75697e-6	5.6648e-4	7.11207e-5
chr5	181242169	181242231	7009005	0	-	0.612903	(0.59,1]	chr5	537338	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RACK1	ENSG00000204628.12	ENST00000512805.6:ENST00000511473.5:ENST00000504325.5:ENST00000507756.5:ENST00000502905.5:ENST00000511566.5:ENST00000376817.8:ENST00000508682.5:ENST00000504726.1:ENST00000511900.5:ENST00000513060.5:ENST00000512968.5:ENST00000510199.5:ENST00000502844.5:ENST00000507000.5:ENST00000514183.5:ENST00000502548.5:ENST00000503494.5:ENST00000506312.3:ENST00000503081.1:ENST00000515417.5:ENST00000513027.3:ENST00000626067.1:ENST00000505461.5:ENST00000507261.1:ENST00000508963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	183	2	2.2885	2.6630149999999997	3.03753	8.74982e-4	2.56861e-5	0.0106963	5.9568e-4
chr6	30725347	30725442	7112232	0	+	0.368421	(0.36,0.39]	chr6	545067	11	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	65	2	1.8131	2.662965	3.51283	0.0083482	1.73355e-6	0.054565	6.35767e-5
chr2	32222397	32222496	1711951	0	+	0.343434	(0.33,0.36]	chr2	167927	18	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.22102	2.66266	3.1043	0.00736622	5.89179e-4	0.0490627	0.00743488
chr1	156743065	156743160	1316759	0	-	0.621053	(0.59,1]	chr1	133965	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5:ENST00000482651.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	74	2	2.40419	2.66258	2.92097	0.0102634	0.00139249	0.0628742	0.0143941
chr8	123191886	123191970	9588442	0	+	0.52381	(0.49,0.53]	chr8	727179	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10:ENST00000521468.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.38097	2.6625	2.94403	0.0425419	0.00122634	0.167547	0.0130695
chr3	44750741	44750841	4149066	0	-	0.3	(0.29,0.33]	chr3	346666	21	UTR3	UTR3:EXON_MRNA:INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.24226	2.662435	3.08261	0.0306054	0.0048227	0.130226	0.0365653
chr7	158639893	158639991	9158581	0	-	0.316327	(0.29,0.33]	chr7	699496	2	UTR3	UTR3:EXON_MRNA:INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.24226	2.662435	3.08261	0.0306054	0.0048227	0.130226	0.0365653
chrX	141905807	141905907	18883524	0	+	0.45	(0.42,0.455]	chrX	1608997	5	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	1.87908	2.6622250000000003	3.44537	0.0189336	8.6897e-5	0.0958835	0.00177086
chr17	21002244	21002343	16477808	0	-	0.313131	(0.29,0.33]	chr17	1346694	28	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.48886	2.6620850000000003	2.83531	0.0055888	0.00228447	0.0419759	0.0209856
chr19	49909022	49909120	17608186	0	-	0.632653	(0.59,1]	chr19	1484492	8	CDS	CDS:EXON_MRNA:INTRON	IL4I1:NUP62	ENSG00000104951.16:ENSG00000213024.12	ENST00000341114.7:ENST00000595948.5:ENST00000601717.5:ENST00000596022.5:ENST00000597295.5:ENST00000596011.1:ENST00000422090.2:ENST00000352066.8:ENST00000597723.5:ENST00000597029.5:ENST00000596217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	79	2	2.1563	2.66181	3.16732	0.00708052	5.6576e-4	0.0478776	0.00718071
chr11	74254404	74254504	12016987	0	+	0.57	(0.53,0.59]	chr11	926524	10	UTR3	UTR3:EXON_MRNA	PPME1	ENSG00000214517.10	ENST00000328257.13:ENST00000398427.6:ENST00000543525.3:ENST00000541340.5:ENST00000539021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	50	2	1.27822	2.66175	4.04528	0.050343	4.28524e-5	0.180951	9.98851e-4
chr20	31801351	31801442	17749993	0	+	0.428571	(0.42,0.455]	chr20	1498093	4	UTR3	UTR3:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.24157	2.661695	3.08182	0.0087798	6.80627e-4	0.0562439	0.00876781
chrX	78118110	78118170	18747068	0	+	0.616667	(0.59,1]	chrX	1599831	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	208	2	2.58757	2.6616549999999997	2.73574	1.51529e-4	1.02855e-4	0.00252765	0.00200184
chr10	69394949	69395027	11096787	0	+	0.435897	(0.42,0.455]	chr10	843809	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	38	2	2.32656	2.66161	2.99666	0.00298867	0.00104775	0.0255712	0.0123035
chr16	88875627	88875723	16075708	0	-	0.677083	(0.59,1]	chr16	1291936	9	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	2.01575	2.661415	3.30708	0.0201728	0.00252451	0.0978331	0.0226777
chr2	28799597	28799696	1702894	0	+	0.333333	(0.33,0.36]	chr2	167042	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.31697	2.6613499999999997	3.00573	0.00966431	0.00630535	0.0606263	0.044701
chr12	55994497	55994596	12897168	0	+	0.333333	(0.33,0.36]	chr12	1003857	24	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	41	2	1.63877	2.66076	3.68275	0.0146763	2.69528e-5	0.0799372	6.88144e-4
chr2	55234896	55234962	1822078	0	+	0.393939	(0.39,0.42]	chr2	173961	2	CDS	CDS:EXON_MRNA	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000272317.11:ENST00000478196.6:ENST00000495843.1:ENST00000468810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	144	2	2.33095	2.66076	2.99057	7.09987e-4	2.59168e-7	0.00895243	1.26319e-5
chr11	9586107	9586187	11793769	0	+	0.3875	(0.36,0.39]	chr11	903104	2	SS3_PROX	SS3_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000524612.5:ENST00000530712.6:ENST00000530175.5:ENST00000532275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.63115	2.66075	2.69035	0.0245975	0.00123789	0.114841	0.013161
chr7	151074757	151074841	8617523	0	+	0.547619	(0.53,0.59]	chr7	658379	2	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	47	2	2.16037	2.660735	3.1611	0.0254312	8.49658e-5	0.117089	0.00159594
chr1	1047572	1047629	2346	0	+	0.526316	(0.49,0.53]	chr1	529	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000466223.1:ENST00000478677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	34	2	1.99044	2.6607149999999997	3.33099	0.0435903	1.59567e-4	0.170594	0.00263091
chr16	75577278	75577369	15741960	0	+	0.428571	(0.42,0.455]	chr16	1254268	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GABARAPL2	ENSG00000034713.8	ENST00000037243.7:ENST00000563744.1:ENST00000568455.1:ENST00000565985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.42938	2.66065	2.89192	0.0045028	0.00157686	0.0349711	0.015761
chr11	65129728	65129821	12421655	0	-	0.645161	(0.59,1]	chr11	963738	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	SYVN1:MIR6751	ENSG00000162298.19:ENSG00000284489.1	ENST00000530451.1:ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000527765.1:ENST00000610479.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	3	46	2	2.59461	2.66043	2.72625	0.0259455	0.00394493	0.117079	0.0322851
chr2	107710610	107710710	2831275	0	-	0.24	[0,0.29]	chr2	252399	69	INTRON	INTRON	LINC01885:RP11-534J18.1	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	5	22	2	1.95226	2.660345	3.36843	0.0282226	3.09234e-4	0.124386	0.00477565
chr9	97926888	97926987	10759619	0	-	0.282828	[0,0.29]	chr9	814684	2	UTR3	UTR3:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	18	66	2	2.0501	2.6602699999999997	3.27044	6.52305e-4	1.01311e-5	0.00807069	3.04784e-4
chr1	162529132	162529232	507554	0	+	0.37	(0.36,0.39]	chr1	54762	67	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	10	55	2	2.1181	2.6602	3.2023	0.00385216	1.80229e-5	0.032128	4.47567e-4
chr12	53307488	53307588	13338782	0	-	0.62	(0.59,1]	chr12	1049025	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	71	2	2.26579	2.659995	3.0542	0.00663549	0.00263137	0.0456243	0.0231864
chr1	162597791	162597858	507936	0	+	0.41791	(0.39,0.42]	chr1	54827	1	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1:ENST00000486089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	27	2	2.61392	2.659915	2.70591	0.0185716	0.0017565	0.0932453	0.0171455
chr2	38749662	38749705	2605201	0	-	0.55814	(0.53,0.59]	chr2	234695	1	CDS	CDS:UTR5:EXON_MRNA	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	1.78041	2.659855	3.5393	0.0407112	6.46017e-4	0.163285	0.00799743
chr1	220019987	220020065	1511207	0	-	0.397436	(0.39,0.42]	chr1	151080	1	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	55	2	2.27012	2.6597999999999997	3.04948	0.00945558	1.91318e-5	0.0594007	4.6791e-4
chr1	8878649	8878720	852570	0	-	0.690141	(0.59,1]	chr1	85991	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000646370.2:ENST00000645609.1:ENST00000646680.1:ENST00000646156.1:ENST00000489867.2:ENST00000486051.5:ENST00000492343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	230	2	2.37513	2.659795	2.94446	5.06507e-4	1.55825e-5	0.0065937	4.36939e-4
chrX	24073090	24073176	18616641	0	+	0.476744	(0.455,0.49]	chrX	1589836	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000460032.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	84	2	2.48985	2.65973	2.82961	2.1638e-4	6.80416e-5	0.00361336	0.00132115
chr12	54231305	54231396	13342839	0	-	0.549451	(0.53,0.59]	chr12	1049600	5	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	7	56	2	2.3186	2.6597299999999997	3.00086	0.00299541	2.19267e-4	0.0256157	0.00365543
chr1	241630926	241631025	1578022	0	-	0.30303	(0.29,0.33]	chr1	157611	22	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	38	2	1.55778	2.65961	3.76144	0.03577	1.09291e-5	0.147298	2.96269e-4
chr1	17408894	17408991	874019	0	-	0.391753	(0.39,0.42]	chr1	89600	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	52	2	2.48899	2.65953	2.83007	6.84309e-4	2.4817e-4	0.00836671	0.00406956
chr9	35060861	35060923	10638106	0	-	0.596774	(0.59,1]	chr9	804513	2	CDS	CDS:UTR3:EXON_MRNA	VCP	ENSG00000165280.18	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	33	2	2.32455	2.659465	2.99438	0.0520547	0.00776449	0.193787	0.050813
chrX	77968780	77968873	19129667	0	-	0.634409	(0.59,1]	chrX	1626916	10	UTR3	UTR3:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	2	33	2	2.32455	2.659465	2.99438	0.0520547	0.00776449	0.193787	0.050813
chr17	1344856	1344953	16398374	0	-	0.42268	(0.42,0.455]	chr17	1334230	7	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	97	2	1.96953	2.659355	3.34918	7.06636e-4	6.39038e-6	0.00850581	2.08396e-4
chr7	121097698	121097742	8494825	0	+	0.522727	(0.49,0.53]	chr7	648341	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	1.56396	2.65928	3.7546	0.0388812	2.09468e-4	0.158355	0.00327655
chr16	30357194	30357288	15914334	0	-	0.531915	(0.53,0.59]	chr16	1275315	2	UTR3	UTR3:EXON_MRNA	TBC1D10B	ENSG00000169221.14	ENST00000409939.8:ENST00000475650.1:ENST00000478158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.29789	2.659215	3.02054	0.00674768	0.00577011	0.0468196	0.0426551
chr6	30705404	30705503	7659051	0	-	0.555556	(0.53,0.59]	chr6	584223	19	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000417033.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	2.0404	2.659215	3.2780300000000002	0.0362529	4.08373e-5	0.148525	8.76332e-4
chr16	173125	173225	15480731	0	+	0.62	(0.59,1]	chr16	1224195	1	CDS_START	CDS_START:CDS:EXON_MRNA	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1:ENST00000484216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	122	1578	2	2.37601	2.65913	2.94225	1.90827e-5	4.92466e-7	4.67103e-4	2.44272e-5
chr1	21833466	21833540	890728	0	-	0.635135	(0.59,1]	chr1	92268	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	79	2	2.26146	2.6591	3.05674	0.00467034	9.4094e-4	0.0361714	0.0106352
chr1	95151324	95151419	361698	0	+	0.326316	(0.29,0.33]	chr1	35669	1	CDS	CDS:EXON_MRNA	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	1.83055	2.659085	3.48762	0.0348758	2.18993e-6	0.144642	7.72993e-5
chr1	36341463	36341560	940169	0	-	0.350515	(0.33,0.36]	chr1	98983	20	UTR3	UTR3:EXON_MRNA	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.16995	2.658835	3.14772	0.0124739	6.79194e-4	0.0713206	0.00876781
chr5	119133786	119133884	6175262	0	+	0.357143	(0.33,0.36]	chr5	481642	4	CDS	CDS:EXON_MRNA	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000311085.8	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.16995	2.658835	3.14772	0.0124739	6.79194e-4	0.0713206	0.00876781
chr5	179726737	179726837	6414440	0	+	0.36	(0.33,0.36]	chr5	499208	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.65713	2.658525	3.65992	0.0528205	3.45596e-4	0.195536	0.00486237
chr1	179877692	179877747	1394974	0	-	0.381818	(0.36,0.39]	chr1	141336	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1:ENST00000474318.1:ENST00000483123.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr11	5323735	5323827	12241327	0	-	0.380435	(0.36,0.39]	chr11	946148	4	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5:OR51B2	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8:ENSG00000279012.2	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000624187.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr11	35809861	35809961	11910495	0	+	0.38	(0.36,0.39]	chr11	910190	36	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr15	34897558	34897631	15207056	0	-	0.383562	(0.36,0.39]	chr15	1197334	1	CDS	CDS:UTR3:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr16	21656987	21657084	15585620	0	+	0.371134	(0.36,0.39]	chr16	1235205	17	UTR3	UTR3:EXON_MRNA	METTL9	ENSG00000197006.14	ENST00000358154.8:ENST00000615720.4:ENST00000564733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr3	37265044	37265144	3411394	0	+	0.38	(0.36,0.39]	chr3	296393	132	INTRON	INTRON	GOLGA4	ENSG00000144674.16	ENST00000361924.6:ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000617480.4:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr4	56935444	56935544	4850411	0	+	0.37	(0.36,0.39]	chr4	399721	34	UTR3	UTR3:EXON_MRNA:INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000619101.5:ENST00000675105.1:ENST00000675341.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr9	125147572	125147672	10855758	0	-	0.37	(0.36,0.39]	chr9	822322	11	UTR3	UTR3:EXON_MRNA	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr9	128268116	128268160	10864279	0	-	0.386364	(0.36,0.39]	chr9	823574	1	CDS	CDS:EXON_MRNA:INTRON	GOLGA2	ENSG00000167110.18	ENST00000421699.7:ENST00000611957.4:ENST00000610329.4:ENST00000450617.6:ENST00000458730.2	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chrX	25645807	25645894	19007760	0	-	0.37931	(0.36,0.39]	chrX	1617369	2	EXON_PSEUDO	EXON_PSEUDO	RANBP1P1	ENSG00000228519.3	ENST00000496795.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	15	2	2.38564	2.6585	2.93136	0.0476159	0.00811967	0.17993	0.0528637
chr15	90981498	90981583	15439301	0	-	0.411765	(0.39,0.42]	chr15	1221387	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6:ENST00000560605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	39	2	1.65176	2.658215	3.66467	0.0131984	3.60066e-4	0.0740172	0.00544157
chr7	96688825	96688923	8939719	0	-	0.387755	(0.36,0.39]	chr7	682157	10	UTR3	UTR3:EXON_MRNA:INTRON	SEM1	ENSG00000127922.9	ENST00000466986.5:ENST00000618105.4:ENST00000619259.4:ENST00000617133.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.3:ENST00000482389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	2.02118	2.65796	3.29474	0.0251625	0.00194306	0.117055	0.0185233
chr17	44035514	44035613	16556066	0	-	0.333333	(0.33,0.36]	chr17	1358855	13	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	14	56	2	1.54614	2.6578	3.76946	0.012766	1.66477e-6	0.0725185	6.7743e-5
chr1	65633758	65633856	253658	0	+	0.408163	(0.39,0.42]	chr1	28907	7	UTR3	UTR3:EXON_MRNA:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.65092	2.657795	3.66467	0.0216584	3.60066e-4	0.103121	0.00544157
chr1	186355701	186355768	1412180	0	-	0.402985	(0.39,0.42]	chr1	142944	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000491783.5:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	38	2	1.79377	2.65758	3.52139	0.0299302	5.10101e-5	0.129773	0.00104581
chr1	211313559	211313659	699357	0	+	0.59	(0.53,0.59]	chr1	70835	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000367005.8:ENST00000529763.5:ENST00000486666.5:ENST00000526255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	36	2	1.70379	2.65756	3.61133	0.0330081	4.55298e-4	0.138711	0.00608573
chr9	73170050	73170107	10304794	0	+	0.403509	(0.39,0.42]	chr9	776069	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000491192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.62131	2.6575249999999997	2.69374	0.00609677	0.00386013	0.0439136	0.0310764
chr1	36301624	36301696	141699	0	+	0.430556	(0.42,0.455]	chr1	17599	2	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.56263	2.657465	2.7523	0.0153283	9.19381e-4	0.0828908	0.0104432
chr6	97144531	97144630	7854150	0	-	0.40404	(0.39,0.42]	chr6	601416	25	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.98676	2.657435	3.32811	0.0439902	0.00182819	0.163596	0.0183913
chr6	27838942	27839042	7105172	0	+	0.66	(0.59,1]	chr6	543472	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC15	ENSG00000233822.5	ENST00000612898.1:ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	151	2	2.40921	2.65723	2.90525	4.21945e-4	2.35262e-4	0.00572909	0.00387599
chr6	33404948	33405046	7121886	0	+	0.581633	(0.53,0.59]	chr6	547581	2	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	2.56002	2.6571100000000003	2.7542	0.00634904	3.14256e-4	0.0446708	0.00452711
chr9	137243456	137243556	10515409	0	+	0.61	(0.59,1]	chr9	797250	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	135	2	2.50936	2.657045	2.80473	0.00161521	1.02419e-4	0.016933900000000002	0.00183759
chr1	110401339	110401430	1222270	0	-	0.32967	(0.29,0.33]	chr1	119458	2	UTR3	UTR3:EXON_MRNA	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000602858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	96	2	2.65334	2.65671	2.6600799999999998	1.46845e-4	5.95453e-6	0.0026854	1.79274e-4
chr8	127736420	127736512	9612629	0	+	0.630435	(0.59,1]	chr8	728476	4	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000641036.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	43	2	2.25872	2.65646	3.0542	0.0193473	0.00663549	0.0969537	0.0456243
chr6	26027252	26027283	7646924	0	-	0.451613	(0.42,0.455]	chr6	582485	1	UTR5	UTR5:EXON_MRNA	H4C2	ENSG00000278705.2	ENST00000377745.4	protein_coding	protein_coding	protein_coding	protein_coding	11	67	2	2.41282	2.6563	2.89978	5.84644e-4	5.81698e-5	0.00740531	0.00128763
chr11	14479641	14479714	12281782	0	-	0.438356	(0.42,0.455]	chr11	949631	2	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.51372	2.656265	3.79881	0.0346574	1.65328e-4	0.141505	0.0029267300000000002
chr3	5180620	5180717	3278265	0	+	0.298969	(0.29,0.33]	chr3	288772	20	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.45591	2.6562349999999997	2.85656	0.00406506	9.79425e-4	0.032143	0.0116574
chr2	148051545	148051644	2116060	0	+	0.444444	(0.42,0.455]	chr2	196919	68	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.03532	2.6561950000000003	3.27707	0.040947	0.00207325	0.163285	0.0194849
chr5	141319660	141319755	6874998	0	-	0.452632	(0.42,0.455]	chr5	526345	7	CDS	CDS:EXON_MRNA:INTRON	TAF7	ENSG00000178913.8	ENST00000624699.1:ENST00000313368.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.03532	2.6561950000000003	3.27707	0.040947	0.00207325	0.163285	0.0194849
chrX	37728180	37728271	18656811	0	+	0.450549	(0.42,0.455]	chrX	1591367	7	CDS	CDS:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.03532	2.6561950000000003	3.27707	0.040947	0.00207325	0.163285	0.0194849
chr1	173487863	173487958	548621	0	+	0.494737	(0.49,0.53]	chr1	58305	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6:ENST00000470017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	116	2	2.16326	2.65599	3.14872	7.75247e-4	1.04774e-6	0.00967545	4.16187e-5
chr1	197688996	197689076	645220	0	+	0.3875	(0.36,0.39]	chr1	64875	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P32	ENSG00000213046.4	ENST00000418613.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	8	45	2	2.00093	2.655825	3.31072	0.00996106	3.24695e-5	0.0621728	7.18962e-4
chr22	19443769	19443868	18433521	0	-	0.545455	(0.53,0.59]	chr22	1570857	22	UTR3	UTR3:EXON_MRNA:INTRON	C22orf39:HIRA	ENSG00000242259.9:ENSG00000100084.14	ENST00000509549.5:ENST00000452818.1:ENST00000399562.9:ENST00000399568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	2.38191	2.6557649999999997	2.92962	0.00477439	0.0012954	0.0368489	0.0136936
chr12	54292654	54292745	13343346	0	-	0.593407	(0.59,1]	chr12	1049646	3	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.82129	2.655745	3.4902	0.0227814	0.00130379	0.105293	0.0142445
chr16	58545425	58545491	15966500	0	-	0.515152	(0.49,0.53]	chr16	1281156	2	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000441024.6:ENST00000567133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	75	2	2.25248	2.6557	3.05892	0.00144423	1.79873e-5	0.0155183	4.46935e-4
chr1	113974106	113974205	418216	0	+	0.333333	(0.33,0.36]	chr1	41199	7	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.54538	2.65544	2.7655	0.0175892	0.00259294	0.0918323	0.0229695
chr2	43948479	43948548	2623568	0	-	0.347826	(0.33,0.36]	chr2	236219	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000467058.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	23	2	2.54538	2.65544	2.7655	0.0175892	0.00259294	0.0918323	0.0229695
chr8	23531584	23531684	9230306	0	+	0.36	(0.33,0.36]	chr8	706531	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	37	2	2.22102	2.655315	3.08961	0.00736622	1.38453e-4	0.0490627	0.00234747
chr11	5300417	5300516	12241090	0	-	0.343434	(0.33,0.36]	chr11	946132	82	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	2.44986	2.655295	2.86073	0.0105608	0.00563343	0.0644466	0.0422191
chr7	105112293	105112387	8449880	0	+	0.43617	(0.42,0.455]	chr7	645366	6	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	72	2	2.24762	2.65519	3.06276	9.46614e-4	1.83422e-5	0.010681	5.00351e-4
chr6	26123439	26123523	7647049	0	-	0.47619	(0.455,0.49]	chr6	582516	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC4	ENSG00000180596.7	ENST00000314332.5:ENST00000396984.1	protein_coding	protein_coding	protein_coding	protein_coding	22	135	2	1.84559	2.65518	3.46477	0.00177168	6.23307e-8	0.0181045	3.723e-6
chr1	19121933	19122012	876105	0	-	0.506329	(0.49,0.53]	chr1	90064	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.38935	2.6550849999999997	2.92082	0.00827037	0.00488689	0.0534766	0.0376157
chr5	37294396	37294465	6539972	0	-	0.362319	(0.36,0.39]	chr5	506507	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	54	2	2.59525	2.65484	2.71443	5.60322e-4	2.00567e-4	0.00771955	0.00317675
chr16	30069585	30069673	15628431	0	+	0.602273	(0.59,1]	chr16	1239793	2	CDS	CDS:UTR3:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000564688.1:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	89	1066	2	2.30172	2.6547099999999997	3.0077	3.27693e-5	7.0374e-7	7.25098e-4	3.30394e-5
chr17	35639594	35639677	16206642	0	+	0.46988	(0.455,0.49]	chr17	1309071	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	35	2	2.52734	2.65461	2.78188	0.00792433	7.46087e-4	0.0523592	0.00892618
chr1	110023054	110023152	401936	0	+	0.367347	(0.36,0.39]	chr1	39336	15	UTR3	UTR3:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.42114	2.6543799999999997	2.88762	0.00564641	4.35345e-4	0.0422191	0.005869
chr3	196828799	196828898	3990183	0	+	0.393939	(0.39,0.42]	chr3	336202	5	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	2.3212	2.65436	2.98752	0.00312058	2.91053e-4	0.0264364	0.00462551
chr6	41935850	41935944	7701869	0	-	0.638298	(0.59,1]	chr6	590674	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5:ENST00000511686.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	73	2	2.36593	2.65428	2.94263	0.0141097	4.44672e-4	0.077233	0.00598735
chr11	64223392	64223492	11979524	0	+	0.66	(0.59,1]	chr11	918812	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FERMT3	ENSG00000149781.13	ENST00000345728.10:ENST00000279227.9:ENST00000545896.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.91544	2.65418	3.39292	0.0165875	0.00192565	0.0878414	0.0191769
chr17	1345244	1345341	16398378	0	-	0.319588	(0.29,0.33]	chr17	1334230	11	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	91	2	1.94691	2.654175	3.36144	0.00135558	2.91838e-7	0.0146752	1.39859e-5
chr1	11023525	11023624	42056	0	+	0.393939	(0.39,0.42]	chr1	5026	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.49701	2.654035	2.81106	0.0339607	6.4431e-4	0.141431	0.00799617
chr11	32932340	32932440	11899050	0	+	0.48	(0.455,0.49]	chr11	909001	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	59	2	1.93086	2.65402	3.37718	0.00521832	2.04354e-5	0.0398977	4.9659e-4
chr1	632037	632133	489	0	+	0.489583	(0.455,0.49]	chr1	106	11	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	79	459	2	2.45747	2.653955	2.85044	1.43431e-6	6.37779e-8	5.95367e-5	3.80147e-6
chr10	26759149	26759238	11420770	0	-	0.52809	(0.49,0.53]	chr10	870538	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.38683	2.653825	2.92082	0.012654	0.00827037	0.0718207	0.0534766
chr17	50134931	50135031	16584282	0	-	0.58	(0.53,0.59]	chr17	1362799	13	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.64837	2.6536549999999997	2.65894	0.0199467	0.0193255	0.0984041	0.0943643
chr3	38141186	38141286	3419188	0	+	0.58	(0.53,0.59]	chr3	297124	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYD88	ENSG00000172936.16	ENST00000396334.8:ENST00000417037.8:ENST00000652213.1:ENST00000416282.3:ENST00000650112.2:ENST00000421516.3:ENST00000650905.2:ENST00000651800.2:ENST00000652590.1:ENST00000481122.5:ENST00000484513.1:ENST00000463956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.64837	2.6536549999999997	2.65894	0.0199467	0.0193255	0.0984041	0.0943643
chr3	196237410	196237508	4663885	0	-	0.571429	(0.53,0.59]	chr3	385717	32	UTR3	UTR3:EXON_MRNA:INTRON	PCYT1A	ENSG00000161217.12	ENST00000441879.5:ENST00000419333.5:ENST00000431016.6:ENST00000292823.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.64837	2.6536549999999997	2.65894	0.0199467	0.0193255	0.0984041	0.0943643
chr9	127692243	127692342	10475574	0	+	0.535354	(0.53,0.59]	chr9	789241	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STXBP1	ENSG00000136854.24	ENST00000636509.2:ENST00000626539.3:ENST00000635950.2:ENST00000636962.2:ENST00000637953.1:ENST00000637464.2:ENST00000637173.2:ENST00000637060.2:ENST00000373302.8:ENST00000373299.5:ENST00000650920.1:ENST00000626416.2:ENST00000628768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	20	2	2.64837	2.6536549999999997	2.65894	0.0199467	0.0193255	0.0984041	0.0943643
chr1	50441340	50441439	1007971	0	-	0.636364	(0.59,1]	chr1	104687	45	UTR3	UTR3:EXON_MRNA	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	43	2	2.17889	2.653295	3.1277	0.025085	0.00490589	0.116848	0.0366648
chr12	57748324	57748424	13357731	0	-	0.46	(0.455,0.49]	chr12	1053000	7	UTR3	UTR3:EXON_MRNA:PRIMIRNA	CDK4:MIR6759	ENSG00000135446.17:ENSG00000283621.1	ENST00000312990.10:ENST00000257904.11:ENST00000638110.1:ENST00000552713.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	9	55	2	2.01306	2.6532799999999996	3.2935	0.00504605	3.58585e-5	0.0387124	7.84153e-4
chr1	236552194	236552292	769818	0	+	0.316327	(0.29,0.33]	chr1	77622	42	UTR3	UTR3:EXON_MRNA	LGALS8	ENSG00000116977.19	ENST00000526589.5:ENST00000450372.6:ENST00000416919.6:ENST00000366584.9	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38576	2.653205	2.92065	0.0439193	0.0117842	0.163572	0.0686664
chr10	125841648	125841744	11305304	0	+	0.322917	(0.29,0.33]	chr10	862173	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCCIP	ENSG00000107949.17	ENST00000368759.5:ENST00000299130.7	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38576	2.653205	2.92065	0.0439193	0.0117842	0.163572	0.0686664
chr12	66152270	66152323	13383971	0	-	0.320755	(0.29,0.33]	chr12	1054552	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	RP11-745O10.4:TMBIM4	ENSG00000228144.2:ENSG00000155957.18	ENST00000539652.1:ENST00000358230.8:ENST00000544599.5:ENST00000398033.8:ENST00000613669.4:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1:ENST00000534930.1:ENST00000556010.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	12	2	2.38576	2.653205	2.92065	0.0439193	0.0117842	0.163572	0.0686664
chr4	26431792	26431890	4766688	0	+	0.316327	(0.29,0.33]	chr4	394281	9	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38576	2.653205	2.92065	0.0439193	0.0117842	0.163572	0.0686664
chrX	155277105	155277205	19283285	0	-	0.32	(0.29,0.33]	chrX	1639082	10	UTR3	UTR3:EXON_MRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38576	2.653205	2.92065	0.0439193	0.0117842	0.163572	0.0686664
chr6	27867429	27867529	7649636	0	-	0.65	(0.59,1]	chr6	582823	1	CDS_START	CDS_START:CDS:EXON_MRNA	H1-5	ENSG00000184357.5	ENST00000331442.5	protein_coding	protein_coding	protein_coding	protein_coding	5	73	2	2.44587	2.6528	2.85973	0.0105307	7.1836e-4	0.0644466	0.00903729
chr17	75890204	75890300	16685503	0	-	0.260417	[0,0.29]	chr17	1373702	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	1.93716	2.6527950000000002	3.36843	0.0548436	3.09234e-4	0.189511	0.00477565
chr22	31956692	31956792	18351653	0	+	0.54	(0.53,0.59]	chr22	1560135	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	45	2	1.78041	2.65268	3.52495	0.0407112	5.15316e-5	0.163285	0.00105223
chr3	184172036	184172135	3948124	0	+	0.565657	(0.53,0.59]	chr3	331990	14	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	1.49715	2.652605	3.80806	0.0455868	1.65022e-4	0.175638	0.00269147
chr12	124324710	124324808	13597613	0	-	0.438776	(0.42,0.455]	chr12	1071370	4	UTR3	UTR3:EXON_MRNA	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000404121.6:ENST00000356219.7:ENST00000429285.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.36247	2.6525499999999997	2.94263	0.0462889	0.00766873	0.176878	0.0503696
chr2	28912647	28912710	1703602	0	+	0.428571	(0.42,0.455]	chr2	167126	1	CDS_START	CDS_START:CDS:EXON_MRNA	WDR43	ENSG00000163811.12	ENST00000407426.8:ENST00000440983.1:ENST00000296126.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.36247	2.6525499999999997	2.94263	0.0462889	0.00766873	0.176878	0.0503696
chr9	111371759	111371829	10798254	0	-	0.428571	(0.42,0.455]	chr9	817748	3	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000374383.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.36247	2.6525499999999997	2.94263	0.0462889	0.00766873	0.176878	0.0503696
chrX	119876534	119876598	18841998	0	+	0.40625	(0.39,0.42]	chrX	1605636	1	UTR3	UTR3:EXON_MRNA	NDUFA1	ENSG00000125356.7	ENST00000371437.5	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.50896	2.6524799999999997	3.796	0.052263	9.19925e-7	0.194473	3.73019e-5
chr7	76057970	76058070	8342313	0	+	0.61	(0.59,1]	chr7	636229	1	CDS_START	CDS_START:CDS:EXON_MRNA	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	216	2	2.58608	2.65246	2.71884	1.87781e-4	7.03507e-5	0.00325767	0.00135678
chr10	84560715	84560806	11167545	0	+	0.43956	(0.42,0.455]	chr10	848475	4	EXON_PSEUDO	EXON_PSEUDO	RPS3AP5	ENSG00000178429.9	ENST00000389400.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	52	2	2.40387	2.6523399999999997	2.90081	0.00231472	1.31286e-4	0.0219615	0.00226535
chr17	39260659	39260759	16534364	0	-	0.46	(0.455,0.49]	chr17	1353914	81	UTR3	UTR3:EXON_MRNA:INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.0008	2.65232	3.30384	0.0129467	0.00184955	0.0724783	0.0178046
chr8	96231773	96231835	9962100	0	-	0.451613	(0.42,0.455]	chr8	751578	1	CDS	CDS:UTR3:EXON_MRNA	UQCRB	ENSG00000156467.10	ENST00000287022.10:ENST00000517603.5:ENST00000521036.5:ENST00000518876.1:ENST00000517523.1:ENST00000518406.5:ENST00000521948.1:ENST00000523920.1:ENST00000519322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	87	2	2.41224	2.65227	2.8923	3.95119e-4	1.41073e-5	0.00587341	3.65117e-4
chr21	37223613	37223710	18244225	0	-	0.298969	(0.29,0.33]	chr21	1547397	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS26C	ENSG00000157538.14	ENST00000399000.7:ENST00000497493.1:ENST00000309117.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	22	2	2.63162	2.652195	2.67277	0.0255386	0.00179843	0.117089	0.0174371
chr20	47249286	47249362	17993511	0	-	0.473684	(0.455,0.49]	chr20	1524987	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.63872	2.652175	2.66563	0.00510378	0.0043075	0.0390492	0.0334284
chr9	33625107	33625200	10236160	0	+	0.473118	(0.455,0.49]	chr9	769679	10	EXON_PSEUDO	EXON_PSEUDO	ANXA2P2	ENSG00000231991.4	ENST00000435128.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	28	2	2.63872	2.652175	2.66563	0.00510378	0.0043075	0.0390492	0.0334284
chr2	169631774	169631853	2196650	0	+	0.455696	(0.455,0.49]	chr2	200994	1	CDS	CDS:UTR3:EXON_MRNA	PPIG	ENSG00000138398.17	ENST00000678088.1:ENST00000677392.1:ENST00000433207.6:ENST00000679324.1:ENST00000414307.6:ENST00000676508.1:ENST00000260970.8:ENST00000678695.1:ENST00000409714.7:ENST00000677750.1:ENST00000678721.1:ENST00000462903.6:ENST00000676756.1:ENST00000679107.1:ENST00000678499.1:ENST00000678638.1:ENST00000448752.7:ENST00000482772.5:ENST00000466142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	39	2	1.74392	2.652145	3.56037	0.0113166	5.72551e-4	0.0665375	0.0078026
chrX	109054141	109054241	18819069	0	+	0.44	(0.42,0.455]	chrX	1603841	2	PRIMIRNA	PRIMIRNA	ENSG00000275110	ENSG00000275110.1	ENST00000611066.1	miRNA	primary_miRNA	miRNA	primary_miRNA	375	2348	2	1.93199	2.652095	3.3722	2.78312e-5	2.48589e-11	7.05569e-4	3.92435e-9
chr12	69601325	69601352	12943577	0	+	0.555556	(0.53,0.59]	chr12	1009024	1	CDS	CDS:UTR3:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000550653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	28	2	2.515	2.6519950000000003	2.78899	0.0292633	0.00245784	0.129773	0.0221765
chr9	128257066	128257166	10864141	0	-	0.55	(0.53,0.59]	chr9	823499	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GOLGA2	ENSG00000167110.18	ENST00000421699.7:ENST00000611957.4:ENST00000610329.4:ENST00000639983.1	protein_coding	protein_coding	protein_coding	protein_coding	3	28	2	2.515	2.6519950000000003	2.78899	0.0292633	0.00245784	0.129773	0.0221765
chr5	14653031	14653130	6462541	0	-	0.444444	(0.42,0.455]	chr5	502940	12	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	64	2	1.92421	2.651915	3.37962	0.00183664	1.2947e-4	0.017742	0.00242147
chr6	35835205	35835303	7677932	0	-	0.571429	(0.53,0.59]	chr6	588535	24	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	35	2	2.37399	2.651805	2.92962	0.0126178	0.0012954	0.0717599	0.0136936
chr1	114706856	114706955	1239474	0	-	0.434343	(0.42,0.455]	chr1	121309	25	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	9	57	2	1.80241	2.6517049999999998	3.501	0.0130341	8.62752e-6	0.072809	2.43605e-4
chr15	57231151	57231204	14949564	0	+	0.396226	(0.39,0.42]	chr15	1174868	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000560887.1:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.59744	2.651675	2.70591	0.0185716	0.00572981	0.0932453	0.0417368
chr6	135200084	135200141	7414906	0	+	0.403509	(0.39,0.42]	chr6	568323	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	57	2	2.03292	2.65164	3.27036	0.00788976	1.09752e-5	0.0522564	2.97332e-4
chr7	99417428	99417511	8422456	0	+	0.325301	(0.29,0.33]	chr7	641942	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000222969.10:ENST00000496696.5:ENST00000456893.6:ENST00000431419.1:ENST00000466798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	28	2	2.35474	2.65159	2.94844	0.00297618	0.00217122	0.0254769	0.0208941
chr7	76326897	76326996	8863384	0	-	0.343434	(0.33,0.36]	chr7	677476	2	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	38	178	2	2.63791	2.6515750000000002	2.66524	4.26325e-6	1.49063e-6	1.49084e-4	5.60825e-5
chr10	21735138	21735235	10961845	0	+	0.412371	(0.39,0.42]	chr10	834194	1	CDS	CDS:UTR3:EXON_MRNA	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	2.25245	2.651375	3.0503	0.00570576	0.00427758	0.0424438	0.0332717
chr12	48074512	48074607	13319380	0	-	0.357895	(0.33,0.36]	chr12	1044654	3	CDS	CDS:UTR3:EXON_MRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5:ENST00000549595.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.53712	2.6513099999999996	2.7655	0.0175892	0.00766322	0.0918323	0.0503696
chr16	66818582	66818637	15986278	0	-	0.345455	(0.33,0.36]	chr16	1282463	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000290810.8:ENST00000379463.6:ENST00000394074.6:ENST00000567743.5:ENST00000563253.5:ENST00000563185.6:ENST00000561579.6:ENST00000564040.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	2.53712	2.6513099999999996	2.7655	0.0175892	0.00766322	0.0918323	0.0503696
chr15	48341288	48341328	14921568	0	+	0.375	(0.36,0.39]	chr15	1173082	1	CDS	CDS:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000559852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.63115	2.651125	2.6711	0.0245975	0.00434596	0.114841	0.0335517
chr17	44035811	44035910	16556069	0	-	0.383838	(0.36,0.39]	chr17	1358855	16	UTR3	UTR3:EXON_MRNA	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.63115	2.651125	2.6711	0.0245975	0.00434596	0.114841	0.0335517
chr3	168009873	168009971	4565780	0	-	0.387755	(0.36,0.39]	chr3	378127	13	UTR3	UTR3:EXON_MRNA	GOLIM4	ENSG00000173905.9	ENST00000470487.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.63115	2.651125	2.6711	0.0245975	0.00434596	0.114841	0.0335517
chr9	112221277	112221376	10802895	0	-	0.40404	(0.39,0.42]	chr9	818409	37	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	20	104	2	2.2435	2.6511199999999997	3.05874	1.37608e-4	8.80979e-6	0.00233495	2.72329e-4
chr5	176527193	176527290	6988767	0	-	0.42268	(0.42,0.455]	chr5	534353	6	UTR3	UTR3:EXON_MRNA	RNF44	ENSG00000146083.12	ENST00000274811.9	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.87908	2.65109	3.4231	0.0189336	0.00112541	0.0958835	0.0128481
chr12	56598324	56598422	13351665	0	-	0.27551	[0,0.29]	chr12	1051592	29	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.33679	2.65106	2.96533	0.00335866	0.0024246	0.0280262	0.0227938
chrX	48258535	48258631	18691068	0	+	0.447917	(0.42,0.455]	chrX	1593864	1	CDS	CDS:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	1.68865	2.6509400000000003	3.61323	0.0276098	2.83914e-5	0.124664	6.46853e-4
chr15	72583586	72583684	15018734	0	+	0.357143	(0.33,0.36]	chr15	1180122	4	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	49	2	1.95289	2.65091	3.34893	0.00206071	2.22813e-4	0.0194414	0.00370775
chr11	65127072	65127171	11982552	0	+	0.50505	(0.49,0.53]	chr11	919922	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPL49	ENSG00000149792.9	ENST00000524482.5:ENST00000526319.5:ENST00000279242.7:ENST00000531705.1:ENST00000532671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr11	73978378	73978477	12458827	0	-	0.494949	(0.49,0.53]	chr11	968513	1	UTR5	UTR5:EXON_MRNA	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5:ENST00000543714.5:ENST00000539764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr12	6921580	6921647	12715477	0	+	0.522388	(0.49,0.53]	chr12	987263	1	CDS	CDS:UTR3:EXON_MRNA	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000538763.5:ENST00000545045.6:ENST00000535366.5:ENST00000535275.5:ENST00000543975.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr12	112140899	112140980	13094454	0	+	0.493827	(0.49,0.53]	chr12	1021520	2	CDS	CDS:UTR3:EXON_MRNA	TRAFD1	ENSG00000135148.12	ENST00000550051.5:ENST00000257604.9:ENST00000549358.5:ENST00000547063.5:ENST00000548092.5:ENST00000412615.7:ENST00000552890.5:ENST00000552896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr17	78223953	78224052	16368064	0	+	0.50505	(0.49,0.53]	chr17	1329653	4	UTR3	UTR3:EXON_MRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr19	28459450	28459548	17525403	0	-	0.510204	(0.49,0.53]	chr19	1470922	20	INTRON	INTRON	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5	lncRNA	lncRNA	lncRNA	lncRNA	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr20	3933366	3933466	17883258	0	-	0.51	(0.49,0.53]	chr20	1513717	62	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.38097	2.6508950000000002	2.92082	0.0425419	0.00827037	0.167547	0.0534766
chr17	59682270	59682349	16295464	0	+	0.493671	(0.49,0.53]	chr17	1321727	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	11	75	2	2.57142	2.65083	2.7302399999999998	8.92776e-4	4.54255e-5	0.0108581	9.47289e-4
chr11	47479052	47479152	12386910	0	-	0.42	(0.39,0.42]	chr11	956967	1	SS3_PROX	SS3_PROX:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7:ENST00000531165.5:ENST00000532048.5:ENST00000422993.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.5823	2.65071	2.71912	0.0163125	0.00246531	0.0866586	0.0230262
chr16	88726714	88726795	16074538	0	-	0.580247	(0.53,0.59]	chr16	1291692	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.5766	2.65069	2.72478	0.00324675	8.34608e-4	0.0282494	0.00978328
chr12	54237363	54237463	13342900	0	-	0.35	(0.33,0.36]	chr12	1049602	60	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.4164	2.65067	2.88494	0.011989	6.89291e-4	0.0700473	0.00876781
chr1	206733011	206733108	683405	0	+	0.505155	(0.49,0.53]	chr1	69024	4	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.18239	2.650655	3.11892	0.024394	0.00398244	0.111797	0.0322851
chr12	6528029	6528091	12713523	0	+	0.516129	(0.49,0.53]	chr12	986601	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000542492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.30264	2.650565	2.99849	0.0165402	0.00630123	0.087611	0.0445415
chr14	22771017	22771098	14174781	0	+	0.493827	(0.49,0.53]	chr14	1110334	1	CDS	CDS:EXON_MRNA	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	1.69633	2.650545	3.60476	0.0531914	4.52633e-4	0.184818	0.00642319
chr3	33833456	33833556	3399554	0	+	0.32	(0.29,0.33]	chr3	295696	41	INTRON	INTRON	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000412887.5:ENST00000482561.1:ENST00000487821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	2.49936	2.6504849999999998	2.80161	0.00917022	0.00415667	0.0580029	0.0325842
chr18	59328812	59328912	17142321	0	-	0.27	[0,0.29]	chr18	1407602	11	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.50979	2.650475	2.79116	0.00608277	0.00287618	0.0438976	0.0247002
chr7	155297859	155297943	8632542	0	+	0.821429	(0.59,1]	chr7	659257	2	UTR5	UTR5:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000425172.1:ENST00000340368.9:ENST00000342407.5	protein_coding	protein_coding	protein_coding	protein_coding	10	136	2	2.35041	2.650255	2.9501	0.00179105	9.06824e-5	0.0173898	0.00182992
chr1	241633597	241633696	1578049	0	-	0.292929	(0.29,0.33]	chr1	157611	49	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	2.24226	2.6502049999999997	3.05815	0.0306054	1.75443e-4	0.130226	0.00284534
chr1	112670132	112670230	411473	0	+	0.336735	(0.33,0.36]	chr1	40540	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000466066.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	47	2	1.90548	2.6502	3.39492	0.00815737	1.86991e-5	0.0536275	4.59195e-4
chr1	40072463	40072556	151985	0	+	0.365591	(0.36,0.39]	chr1	19043	11	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	13	72	2	2.40203	2.650195	2.89836	8.61476e-4	1.33448e-5	0.0105878	3.49427e-4
chr19	34377807	34377881	17300325	0	+	0.540541	(0.53,0.59]	chr19	1429844	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	146	2	1.80327	2.6500250000000003	3.4967800000000002	0.00515902	6.37298e-8	0.0394588	3.80072e-6
chr5	139322782	139322874	6249030	0	+	0.456522	(0.455,0.49]	chr5	487006	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000503811.5:ENST00000618441.5:ENST00000504643.5:ENST00000505625.5:ENST00000502422.5:ENST00000512040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	73	2	1.86459	2.649985	3.43538	0.00533772	3.2185e-6	0.0406292	1.07226e-4
chr17	49828393	49828492	16260203	0	+	0.414141	(0.39,0.42]	chr17	1318079	10	UTR3	UTR3:EXON_MRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000424009.6:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	45	2	2.38186	2.649715	2.91757	0.00601449	1.19356e-4	0.0434483	0.00208353
chr2	75656669	75656768	1894575	0	+	0.353535	(0.33,0.36]	chr2	179770	15	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.51797	2.64946	2.78095	0.0303594	0.00388614	0.130016	0.0322851
chr2	216194918	216194986	2380610	0	+	0.455882	(0.455,0.49]	chr2	213859	1	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.30139	2.6491800000000003	2.99697	0.0530131	9.57891e-4	0.195536	0.0107247
chr12	69587560	69587616	12943417	0	+	0.357143	(0.33,0.36]	chr12	1008964	2	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000546859.5:ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000550455.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	2.44986	2.6491350000000002	2.84841	0.00563343	0.0020676	0.0422191	0.0194849
chr16	29670776	29670876	15626218	0	+	0.24	[0,0.29]	chr16	1239197	60	UTR3	UTR3:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	17	2	2.16074	2.6491350000000002	3.13753	0.0222978	0.00396668	0.105845	0.0317467
chr1	226064351	226064451	738343	0	+	0.57	(0.53,0.59]	chr1	74462	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366814.3:ENST00000366815.10:ENST00000653960.1:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	99	2	2.37973	2.6489599999999998	2.91819	4.40625e-4	2.34782e-5	0.00593537	6.12612e-4
chr3	141745475	141745574	3788832	0	+	0.40404	(0.39,0.42]	chr3	323389	3	UTR3	UTR3:EXON_MRNA:INTRON	RNF7:RP11-271K21.13	ENSG00000114125.14:ENSG00000285558.1	ENST00000480908.1:ENST00000393000.3:ENST00000273480.4:ENST00000477012.5:ENST00000477393.1:ENST00000648835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	2.62131	2.6488899999999997	2.67647	0.00609677	5.01348e-4	0.0439136	0.00653592
chr1	212361656	212361754	702771	0	+	0.367347	(0.36,0.39]	chr1	71311	10	UTR3	UTR3:EXON_MRNA	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.45656	2.6487249999999998	2.84089	0.0128123	0.0100637	0.0719798	0.0624019
chr15	59652277	59652326	15315594	0	-	0.367347	(0.36,0.39]	chr15	1208779	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	GTF2A2:AC092755.4	ENSG00000140307.11:ENSG00000227161.1	ENST00000396060.7:ENST00000267869.8:ENST00000396064.7:ENST00000396063.5:ENST00000396061.5:ENST00000484743.5:ENST00000559141.1:ENST00000559706.1:ENST00000441746.1:ENST00000480768.1:ENST00000472508.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	3	19	2	2.45656	2.6487249999999998	2.84089	0.0128123	0.0100637	0.0719798	0.0624019
chr22	30976544	30976643	18344852	0	+	0.373737	(0.36,0.39]	chr22	1559168	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.45656	2.6487249999999998	2.84089	0.0128123	0.0100637	0.0719798	0.0624019
chr6	135030082	135030182	7976288	0	-	0.38	(0.36,0.39]	chr6	609772	30	INTRON	INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000314674.7:ENST00000524715.5:ENST00000529882.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.45656	2.6487249999999998	2.84089	0.0128123	0.0100637	0.0719798	0.0624019
chr7	103361956	103362016	8441648	0	+	0.366667	(0.36,0.39]	chr7	645093	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	PSMC2	ENSG00000161057.13	ENST00000678493.1:ENST00000457587.5:ENST00000679205.1:ENST00000679341.1:ENST00000435765.5:ENST00000679250.1:ENST00000679046.1:ENST00000292644.5:ENST00000425206.6:ENST00000678488.1:ENST00000677943.1:ENST00000677769.1:ENST00000460021.1:ENST00000676908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	2.11101	2.648715	3.18642	0.00480242	0.00359152	0.0365653	0.0302391
chr14	58408943	58409033	14652165	0	-	0.411111	(0.39,0.42]	chr14	1147546	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000555061.5:ENST00000556367.6:ENST00000555930.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	1.87119	2.648645	3.4261	0.0373134	0.00107164	0.152293	0.0118238
chr7	97858277	97858341	8940675	0	-	0.484375	(0.455,0.49]	chr7	682259	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000462436.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	8	61	2	2.27492	2.648545	3.02217	0.0193827	1.03697e-5	0.0943643	2.85495e-4
chr1	53766274	53766374	1025549	0	-	0.41	(0.39,0.42]	chr1	106347	9	UTR3	UTR3:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.18155	2.64852	3.11549	0.0283931	0.00403491	0.127654	0.032143
chr12	57820621	57820720	13358205	0	-	0.414141	(0.39,0.42]	chr12	1053218	8	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.18155	2.64852	3.11549	0.0283931	0.00403491	0.127654	0.032143
chr12	98544950	98545005	13036833	0	+	0.418182	(0.39,0.42]	chr12	1014974	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1:ENST00000548223.5:ENST00000551987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	20	2	2.18155	2.64852	3.11549	0.0283931	0.00403491	0.127654	0.032143
chr17	8270207	8270302	16109453	0	+	0.4	(0.39,0.42]	chr17	1298324	11	UTR3	UTR3:EXON_MRNA	PFAS	ENSG00000178921.14	ENST00000314666.11:ENST00000546020.2	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.18155	2.64852	3.11549	0.0283931	0.00403491	0.127654	0.032143
chr2	232856958	232857057	2433840	0	+	0.393939	(0.39,0.42]	chr2	219595	2	UTR3	UTR3:EXON_MRNA	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.18155	2.64852	3.11549	0.0283931	0.00403491	0.127654	0.032143
chr3	23919600	23919699	3358563	0	+	0.272727	[0,0.29]	chr3	294139	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	10	43	2	2.61699	2.6484449999999997	2.6799	0.00121378	1.95674e-4	0.0135383	0.00310715
chrX	103686630	103686724	19155437	0	-	0.531915	(0.53,0.59]	chrX	1629364	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000498064.1:ENST00000467755.5:ENST00000488331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	63	2	1.98183	2.64841	3.31499	0.00781631	3.217e-5	0.0519574	7.12922e-4
chr17	35608305	35608387	16206321	0	+	0.426829	(0.42,0.455]	chr17	1309035	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	50	2	2.56263	2.6483049999999997	2.73398	9.19381e-4	3.96345e-4	0.0104432	0.00587914
chr19	12730639	12730719	17470521	0	-	0.5	(0.49,0.53]	chr19	1463053	1	UTR3	UTR3:EXON_MRNA	TRIR	ENSG00000123144.11	ENST00000242784.5:ENST00000592273.5:ENST00000591254.1:ENST00000588213.1:ENST00000589590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	2.59881	2.648135	2.69746	0.00380414	0.00184545	0.0317723	0.0178046
chr2	65269315	65269412	1854382	0	+	0.381443	(0.36,0.39]	chr2	175984	7	UTR3	UTR3:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding	23	112	2	2.11669	2.6480050000000004	3.17932	3.33509e-4	7.42797e-7	0.00508289	3.09912e-5
chr19	972760	972859	17190411	0	+	0.262626	[0,0.29]	chr19	1411266	8	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.61628	2.647905	2.67953	0.0101434	0.0046416	0.0626311	0.0354333
chr5	131393090	131393190	6221761	0	+	0.27	[0,0.29]	chr5	484085	21	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	2.61628	2.647905	2.67953	0.0101434	0.0046416	0.0626311	0.0354333
chr3	196471426	196471524	4665834	0	-	0.377551	(0.36,0.39]	chr3	385954	28	UTR3	UTR3:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.52746	2.64762	2.76778	0.00365703	0.00115604	0.0307238	0.0125677
chr12	8945500	8945584	13197282	0	-	0.547619	(0.53,0.59]	chr12	1033942	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000536844.5:ENST00000543704.5:ENST00000543258.1:ENST00000544245.1:ENST00000540837.1:ENST00000543845.1:ENST00000543159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	33	2	2.51602	2.647615	2.77921	0.0132865	0.00264912	0.0740932	0.024013
chr20	36783898	36783997	17958461	0	-	0.545455	(0.53,0.59]	chr20	1521662	62	UTR3	UTR3:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10:ENST00000465671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	33	2	2.51602	2.647615	2.77921	0.0132865	0.00264912	0.0740932	0.024013
chr17	82571796	82571870	16384277	0	+	0.472973	(0.455,0.49]	chr17	1332713	2	CDS	CDS:EXON_MRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.96875	2.64756	3.32637	0.0480352	1.64563e-4	0.180552	0.00269001
chr11	68049222	68049294	11997824	0	+	0.569444	(0.53,0.59]	chr11	923472	3	CDS	CDS:EXON_MRNA	TCIRG1	ENSG00000110719.10	ENST00000265686.8:ENST00000532635.5:ENST00000525724.5:ENST00000533005.5:ENST00000524870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	49	2	2.45052	2.64755	2.84458	0.00355092	5.21436e-4	0.0300049	0.00674101
chr1	6591309	6591407	845346	0	-	0.571429	(0.53,0.59]	chr1	85371	7	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.16	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	1.60439	2.64752	3.69065	0.0243675	3.04331e-4	0.111797	0.00472028
chr4	105484894	105484993	5026460	0	+	0.40404	(0.39,0.42]	chr4	409127	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	81	2	1.88207	2.6474349999999998	3.4128	0.0012034	1.8582e-5	0.0129255	5.04916e-4
chr19	40441212	40441304	17566444	0	-	0.380435	(0.36,0.39]	chr19	1476366	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERTAD3	ENSG00000167565.13	ENST00000322354.4:ENST00000392028.8:ENST00000601217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.82984	2.647405	3.46497	0.0234753	0.00105709	0.108434	0.0123035
chr13	54440965	54441052	14036976	0	-	0.62069	(0.59,1]	chr13	1101195	4	EXON_PSEUDO	EXON_PSEUDO	RPL13AP25	ENSG00000136149.6	ENST00000484130.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	32	2	2.61074	2.64733	2.68392	0.025486	0.0202468	0.117089	0.0984041
chr14	75134786	75134884	14709074	0	-	0.55102	(0.53,0.59]	chr14	1152525	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5:ENST00000557670.5:ENST00000555036.1:ENST00000555873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.50447	2.647135	2.7898	0.0301162	0.0128364	0.130016	0.0719798
chr19	4110581	4110655	17430740	0	-	0.581081	(0.53,0.59]	chr19	1454821	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAP2K2	ENSG00000126934.14	ENST00000262948.10:ENST00000394867.8:ENST00000599345.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	20	2	2.50447	2.647135	2.7898	0.0301162	0.0128364	0.130016	0.0719798
chr19	47741904	47741999	17363609	0	+	0.589474	(0.53,0.59]	chr19	1441384	6	UTR3	UTR3:EXON_MRNA	EHD2	ENSG00000024422.12	ENST00000263277.8	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.50447	2.647135	2.7898	0.0301162	0.0128364	0.130016	0.0719798
chr17	17383739	17383830	16464546	0	-	0.67033	(0.59,1]	chr17	1344546	5	EXON_PSEUDO	EXON_PSEUDO	RPL13P12	ENSG00000215030.5	ENST00000392730.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	104	2	2.37755	2.647115	2.91668	0.0015785	5.47942e-4	0.0157756	0.00756447
chr1	236559064	236559135	1568276	0	-	0.56338	(0.53,0.59]	chr1	157000	2	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr12	54238560	54238660	13342912	0	-	0.29	[0,0.29]	chr12	1049602	72	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	1.81307	2.647105	3.48114	0.0130205	1.59721e-4	0.0731489	0.00286408
chr13	51942469	51942554	14031036	0	-	0.552941	(0.53,0.59]	chr13	1100392	2	CDS	CDS:UTR3:EXON_MRNA	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000673867.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000674126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr15	57963976	57964069	15305198	0	-	0.569892	(0.53,0.59]	chr15	1208105	2	CDS	CDS:UTR3:EXON_MRNA	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr15	72756348	72756447	15370925	0	-	0.545455	(0.53,0.59]	chr15	1214580	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000562621.1:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr17	7512476	7512533	16105298	0	+	0.578947	(0.53,0.59]	chr17	1296791	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2:ENST00000576553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr17	61946966	61947017	16628241	0	-	0.568627	(0.53,0.59]	chr17	1366816	2	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr2	218274490	218274589	3186633	0	-	0.585859	(0.53,0.59]	chr2	279898	4	UTR3	UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr6	43181216	43181313	7156137	0	+	0.546392	(0.53,0.59]	chr6	552710	22	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr7	75983582	75983636	8342164	0	+	0.537037	(0.53,0.59]	chr7	636185	2	CDS	CDS:UTR3:EXON_MRNA	POR	ENSG00000127948.16	ENST00000461988.6:ENST00000394893.5:ENST00000454934.5:ENST00000412064.6:ENST00000447222.5:ENST00000460892.1:ENST00000439269.1:ENST00000496888.5:ENST00000487247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.515	2.647105	2.77921	0.0292633	0.0132865	0.129773	0.0740932
chr12	112408487	112408556	13545924	0	-	0.550725	(0.53,0.59]	chr12	1066144	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000424576.6:ENST00000546368.2:ENST00000550238.1:ENST00000551041.6:ENST00000552455.5:ENST00000550566.6:ENST00000549847.5:ENST00000551291.6:ENST00000553213.2:ENST00000549562.1:ENST00000548343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	78	2	2.30508	2.6469449999999997	2.98881	4.62354e-4	2.35204e-4	0.00654912	0.00356397
chr1	244408691	244408790	1590660	0	-	0.353535	(0.33,0.36]	chr1	158292	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RP11-518L10.5:ADSS2	ENSG00000240963.1:ENSG00000035687.10	ENST00000417765.1:ENST00000366535.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	17	2	2.28792	2.6468249999999998	3.00573	0.0239159	0.00630535	0.112531	0.044701
chr9	111440446	111440521	10798982	0	-	0.333333	(0.33,0.36]	chr9	817950	2	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.28792	2.6468249999999998	3.00573	0.0239159	0.00630535	0.112531	0.044701
chr16	24215013	24215112	15599237	0	+	0.383838	(0.36,0.39]	chr16	1236920	3	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	18	93	2	2.3384	2.6467549999999997	2.95511	2.4781e-4	4.79941e-6	0.00406478	1.50146e-4
chr12	54462641	54462725	13344066	0	-	0.52381	(0.49,0.53]	chr12	1049894	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	43	2	2.60116	2.64668	2.6922	0.0056515	4.50155e-4	0.0422191	0.00605268
chr5	149496554	149496653	6910257	0	-	0.313131	(0.29,0.33]	chr5	528470	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1:CTB-89H12.4	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.62025	2.64651	2.67277	0.0255386	0.00573581	0.117089	0.0417422
chr1	151052835	151052934	1291633	0	-	0.585859	(0.53,0.59]	chr1	128778	20	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	1.90953	2.6465	3.38347	0.0517711	0.00132446	0.193577	0.0138834
chr9	83660445	83660541	10710348	0	-	0.416667	(0.39,0.42]	chr9	810178	6	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	87	2	2.11044	2.64636	3.18228	4.99471e-4	8.18426e-6	0.0065184	2.55374e-4
chr7	155308299	155308358	8632656	0	+	0.288136	[0,0.29]	chr7	659288	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.15488	2.646205	3.13753	0.0436536	0.00396668	0.170594	0.0317467
chr12	118033817	118033912	13567680	0	-	0.452632	(0.42,0.455]	chr12	1067733	13	UTR3	UTR3:EXON_MRNA	WSB2	ENSG00000176871.9	ENST00000315436.8:ENST00000544233.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.22933	2.6461300000000003	3.06293	0.0102262	0.00492128	0.062872	0.0366648
chr2	96290325	96290419	2790436	0	-	0.425532	(0.42,0.455]	chr2	248779	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.48259	2.646095	2.8096	0.0031851	0.00253237	0.0267166	0.0233955
chr5	149365941	149366011	6290565	0	+	0.585714	(0.53,0.59]	chr5	490732	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PCYOX1L	ENSG00000145882.11	ENST00000510990.6:ENST00000274569.9:ENST00000511945.5:ENST00000505669.5:ENST00000503240.5:ENST00000514349.1:ENST00000507621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	27	2	2.63316	2.64605	2.65894	0.0193255	0.00474401	0.0943643	0.0361423
chr11	34471791	34471880	11906349	0	+	0.213483	[0,0.29]	chr11	909837	5	UTR3	UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5	protein_coding	protein_coding	protein_coding	protein_coding	15	59	2	2.63206	2.64593	2.6598	1.15031e-4	9.96615e-5	0.00219531	0.00180137
chr16	29665525	29665624	15626165	0	+	0.464646	(0.455,0.49]	chr16	1239197	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	73	2	2.33911	2.64526	2.95141	5.94441e-4	3.80375e-5	0.00804997	8.24619e-4
chr2	173955260	173955357	3020156	0	-	0.443299	(0.42,0.455]	chr2	267378	5	CDS	CDS:EXON_MRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	72	2	1.22725	2.645245	4.06324	0.0283136	1.14038e-6	0.124703	4.91686e-5
chr11	57335180	57335240	12394145	0	-	0.6	(0.59,1]	chr11	958562	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6:ENST00000529002.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	32	2	2.59461	2.6446899999999998	2.69477	0.0259455	0.020208	0.117079	0.0978331
chr11	61332968	61333054	12404258	0	-	0.639535	(0.59,1]	chr11	960292	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000542337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.59461	2.6446899999999998	2.69477	0.0259455	0.020208	0.117079	0.0978331
chr16	28379797	28379880	15904973	0	-	0.626506	(0.59,1]	chr16	1273441	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	2	32	2	2.59461	2.6446899999999998	2.69477	0.0259455	0.020208	0.117079	0.0978331
chr22	22485994	22486093	18444742	0	-	0.313131	(0.29,0.33]	chr22	1572767	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.45373	2.64452	2.83531	0.0156405	0.00228447	0.084273700000000007	0.0209856
chr1	19232927	19232996	877281	0	-	0.521739	(0.49,0.53]	chr1	90471	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000375208.7:ENST00000641089.1	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.56183	2.644475	2.72712	0.0261296	9.78408e-4	0.118976	0.0109424
chr16	2243045	2243134	15825094	0	-	0.640449	(0.59,1]	chr16	1262312	1	CDS	CDS:EXON_MRNA	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.03921	2.6444650000000003	3.24972	0.0371471	0.00314037	0.151849	0.0264943
chr11	86001096	86001158	12526160	0	-	0.5	(0.49,0.53]	chr11	972221	2	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1:ENST00000534412.5:ENST00000533350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	83	2	2.30058	2.64446	2.98834	2.39968e-4	1.85754e-4	0.00394917	0.00297468
chr1	155295664	155295756	1307595	0	-	0.619565	(0.59,1]	chr1	132223	1	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7:ENST00000434082.3	protein_coding	protein_coding	protein_coding	protein_coding	3	43	2	2.36593	2.644365	2.9228	0.0141097	0.00981698	0.077233	0.0612992
chr6	37170490	37170575	7136248	0	+	0.717647	(0.59,1]	chr6	549926	5	UTR5	UTR5:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	15	188	2	2.5198	2.64429	2.76878	2.43586e-4	1.31699e-4	0.00399705	0.00227125
chr11	119305301	119305399	12163802	0	+	0.469388	(0.455,0.49]	chr11	938080	57	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.43664	2.64418	2.85172	0.010864	0.00394058	0.0643837	0.0315828
chr3	45745113	45745212	3450178	0	+	0.292929	(0.29,0.33]	chr3	300538	15	UTR3	UTR3:EXON_MRNA	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000672477.1:ENST00000389061.10:ENST00000464102.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.36742	2.644035	2.92065	0.0147368	0.0117842	0.0801529	0.0686664
chr8	96333850	96333948	9499273	0	+	0.510204	(0.49,0.53]	chr8	722507	1	UTR3	UTR3:EXON_MRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000522072.1:ENST00000517982.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.49797	2.643795	2.78962	0.0129044	0.00843736	0.0725185	0.0546021
chr1	1786758	1786856	829678	0	-	0.295918	(0.29,0.33]	chr1	82929	16	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	13	58	2	2.60266	2.643775	2.68489	3.76837e-4	6.66927e-5	0.00563632	0.00130017
chr17	56891269	56891355	16608603	0	-	0.5	(0.49,0.53]	chr17	1364076	1	EXON_SMALL	EXON_SMALL:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	TRIM25:MIR3614	ENSG00000121060.19:ENSG00000284542.1	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000573108.1:ENST00000537230.3:ENST00000581261.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	3	23	2	2.13501	2.64354	3.15207	0.0287874	0.00347189	0.128869	0.0286293
chr19	1038678	1038776	17190852	0	+	0.510204	(0.49,0.53]	chr19	1411408	9	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.13501	2.64354	3.15207	0.0287874	0.00347189	0.128869	0.0286293
chr4	109491326	109491407	5039381	0	+	0.518519	(0.49,0.53]	chr4	409939	1	CDS	CDS:EXON_MRNA	SEC24B	ENSG00000138802.11	ENST00000504968.6:ENST00000399100.6:ENST00000265175.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.13501	2.64354	3.15207	0.0287874	0.00347189	0.128869	0.0286293
chr12	885605	885701	12681426	0	+	0.520833	(0.49,0.53]	chr12	984118	11	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	59	2	1.92426	2.643265	3.36227	0.00714643	2.26725e-5	0.0483104	5.39086e-4
chr17	64506119	64506206	16639791	0	-	0.563218	(0.53,0.59]	chr17	1368524	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	83	2	2.57468	2.643245	2.71181	3.99651e-4	1.32496e-4	0.0054764	0.00246589
chrX	115719133	115719229	19185329	0	-	0.479167	(0.455,0.49]	chrX	1631182	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	DANT2:SUMO2P21	ENSG00000235244.4:ENSG00000228532.4	ENST00000664453.1:ENST00000536192.3	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	26	2	1.79605	2.64319	3.49033	0.0427708	7.92678e-4	0.168094	0.00933379
chr4	48832624	48832682	4827251	0	+	0.517241	(0.49,0.53]	chr4	397801	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	OCIAD1	ENSG00000109180.15	ENST00000504654.5:ENST00000509122.5:ENST00000505922.6:ENST00000509664.5:ENST00000514981.5:ENST00000512981.5:ENST00000507210.5:ENST00000508996.5:ENST00000511662.5:ENST00000396448.6:ENST00000512236.5:ENST00000509164.5:ENST00000381473.7:ENST00000511102.5:ENST00000264312.12:ENST00000444354.6:ENST00000509963.5:ENST00000509246.5:ENST00000506801.5:ENST00000503016.5:ENST00000510824.5:ENST00000507546.5:ENST00000513641.5:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	2.41364	2.64316	2.87268	0.0112538	0.00175078	0.0665375	0.0180053
chr6	34606554	34606641	7674267	0	-	0.425287	(0.42,0.455]	chr6	588125	1	CDS	CDS:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.47379	2.64285	2.81191	0.00996858	6.31824e-4	0.0621728	0.0078507
chr22	21696647	21696746	18303777	0	+	0.464646	(0.455,0.49]	chr22	1554386	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1:ENST00000680573.1:ENST00000462188.1:ENST00000681027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	2.35644	2.642725	2.92901	0.00555877	0.00141135	0.0405952	0.0151901
chr1	214642351	214642448	710444	0	+	0.381443	(0.36,0.39]	chr1	71905	26	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.44447	2.64268	2.84089	0.0364669	0.0128123	0.145024	0.0719798
chr22	22486093	22486191	18444743	0	-	0.377551	(0.36,0.39]	chr22	1572767	18	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ZNF280B	ENSG00000275004.4	ENST00000626650.3:ENST00000619852.2:ENST00000613655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.44447	2.64268	2.84089	0.0364669	0.0128123	0.145024	0.0719798
chr4	13569128	13569226	5316443	0	-	0.387755	(0.36,0.39]	chr4	428060	5	UTR3	UTR3:EXON_MRNA	BOD1L1	ENSG00000038219.13	ENST00000040738.10	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.44447	2.64268	2.84089	0.0364669	0.0128123	0.145024	0.0719798
chr8	8784538	8784637	9688753	0	-	0.363636	(0.36,0.39]	chr8	734266	13	UTR3	UTR3:EXON_MRNA	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.44447	2.64268	2.84089	0.0364669	0.0128123	0.145024	0.0719798
chr8	132013249	132013347	9619625	0	+	0.367347	(0.36,0.39]	chr8	729109	25	UTR3	UTR3:EXON_MRNA	EFR3A	ENSG00000132294.15	ENST00000254624.10:ENST00000519656.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.44447	2.64268	2.84089	0.0364669	0.0128123	0.145024	0.0719798
chr17	1651107	1651174	16401266	0	-	0.552239	(0.53,0.59]	chr17	1334829	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5:ENST00000572723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	29	2	2.35511	2.642365	2.92962	0.0445399	0.0012954	0.172163	0.0136936
chr3	195782859	195782958	4661095	0	-	0.585859	(0.53,0.59]	chr3	385270	42	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	29	2	2.35511	2.642365	2.92962	0.0445399	0.0012954	0.172163	0.0136936
chr16	84759890	84759946	15790837	0	+	0.446429	(0.42,0.455]	chr16	1256689	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1:ENST00000563433.1:ENST00000566378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.34191	2.64227	2.94263	0.0159091	0.00766873	0.0854674	0.0503696
chr1	1048866	1048962	2364	0	+	0.697917	(0.59,1]	chr1	539	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000492947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	101	2	2.21052	2.642105	3.07369	0.010462	8.41923e-5	0.063428	0.0015859
chr21	31671298	31671398	18211188	0	-	0.48	(0.455,0.49]	chr21	1545273	4	UTR3	UTR3:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.35515	2.64208	2.92901	0.0140117	0.00141135	0.0767536	0.0151901
chr19	54180884	54180967	17627730	0	-	0.662651	(0.59,1]	chr19	1488029	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2:ENST00000414665.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	132	2	2.46925	2.64206	2.81487	0.00109873	1.6995e-4	0.0126772	0.00276512
chr19	3976468	3976553	17430173	0	-	0.694118	(0.59,1]	chr19	1454683	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	84	1073	2	2.49445	2.64199	2.78953	2.18329e-5	1.18908e-6	5.75288e-4	4.62793e-5
chr16	57253343	57253440	15683885	0	+	0.350515	(0.33,0.36]	chr16	1247542	11	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.51797	2.6417349999999997	2.7655	0.0303594	0.0175892	0.130016	0.0918323
chr6	26523406	26523506	7102714	0	+	0.36	(0.33,0.36]	chr6	543198	18	EXON_LNCRNA	EXON_LNCRNA	HCG11	ENSG00000228223.3	ENST00000411553.3	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	2.51797	2.6417349999999997	2.7655	0.0303594	0.0175892	0.130016	0.0918323
chrX	63349873	63349971	19088582	0	-	0.336735	(0.33,0.36]	chrX	1624065	28	UTR3	UTR3:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	13	2	2.51797	2.6417349999999997	2.7655	0.0303594	0.0175892	0.130016	0.0918323
chr12	54342205	54342287	12892063	0	+	0.463415	(0.455,0.49]	chr12	1002982	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-968A15.8:COPZ1	ENSG00000258344.1:ENSG00000111481.10	ENST00000553061.1:ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1:ENST00000550713.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	7	46	2	2.53523	2.6416399999999998	2.74805	0.00270505	3.3051e-4	0.0243939	0.00470169
chr20	35626089	35626148	17954693	0	-	0.338983	(0.33,0.36]	chr20	1521048	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000415920.5:ENST00000498814.1:ENST00000473373.1:ENST00000462352.5:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	22	2	2.63456	2.641535	2.64851	0.00707461	0.00492353	0.0478528	0.0366648
chr2	74156468	74156567	2740235	0	-	0.343434	(0.33,0.36]	chr2	243880	41	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	14	66	2	2.4147	2.641475	2.86825	2.65216e-4	1.1745e-4	0.004287	0.00206023
chr17	63817777	63817862	16318948	0	+	0.552941	(0.53,0.59]	chr17	1323920	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	DDX42	ENSG00000198231.13	ENST00000578681.5:ENST00000583590.5:ENST00000389924.7:ENST00000359353.9:ENST00000457800.3:ENST00000584010.5:ENST00000578593.1:ENST00000579539.1:ENST00000582985.1:ENST00000581767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	15	2	1.90953	2.641415	3.3733	0.0529193	0.0517711	0.193577	0.18423900000000001
chr6	30590601	30590701	7111577	0	+	0.57	(0.53,0.59]	chr6	544896	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ABCF1	ENSG00000204574.14	ENST00000376545.7:ENST00000441867.6:ENST00000326195.13:ENST00000475993.1:ENST00000479542.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	1.90953	2.641415	3.3733	0.0529193	0.0517711	0.193577	0.18423900000000001
chr9	136474927	136475025	10890914	0	-	0.540816	(0.53,0.59]	chr9	827596	10	CDS	CDS:EXON_MRNA	SEC16A	ENSG00000148396.18	ENST00000290037.10:ENST00000313050.11:ENST00000371706.7:ENST00000431893.3	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	1.90953	2.641415	3.3733	0.0529193	0.0517711	0.193577	0.18423900000000001
chr11	67586103	67586188	11996990	0	+	0.6	(0.59,1]	chr11	923176	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1:ENST00000495996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	190	2	2.59339	2.641375	2.68936	3.68888e-4	8.51282e-5	0.00553884	0.00159891
chr10	102111453	102111536	11668539	0	-	0.60241	(0.59,1]	chr10	889685	1	CDS	CDS:UTR5:EXON_MRNA	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.29319	2.6411550000000004	2.9891200000000002	0.00823979	0.00750123	0.0540283	0.0495953
chr2	135920526	135920600	2898454	0	-	0.378378	(0.36,0.39]	chr2	258615	2	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000422708.3	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.25794	2.640955	3.02397	0.00674398	0.00429221	0.0461258	0.0333617
chr2	85053508	85053607	1922249	0	+	0.282828	[0,0.29]	chr2	180789	2	UTR3	UTR3:EXON_MRNA	KCMF1	ENSG00000176407.18	ENST00000409785.9	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.88543	2.640905	3.39638	0.0226603	1.22724e-4	0.10742	0.00213239
chr19	12938679	12938770	17238337	0	+	0.659341	(0.59,1]	chr19	1421041	1	CDS_START	CDS_START:CDS:EXON_MRNA	CALR	ENSG00000179218.15	ENST00000587486.6:ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000590325.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	302	2	1.81485	2.640785	3.46672	0.00329585	3.54265e-7	0.0284751	1.64773e-5
chr1	35192494	35192585	936849	0	-	0.78022	(0.59,1]	chr1	98518	4	CDS	CDS:EXON_MRNA	SFPQ	ENSG00000116560.11	ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	9	82	2	1.38314	2.640775	3.89841	0.0378267	1.91539e-4	0.154319	0.00304814
chr17	7514266	7514353	16105321	0	+	0.551724	(0.53,0.59]	chr17	1296801	2	EXON_LNCRNA	EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6	protein_coding	processed_transcript	protein_coding	processed_transcript	5	37	2	2.26097	2.640755	3.02054	0.00577011	0.00389622	0.0426551	0.0313006
chr14	101925369	101925466	14494887	0	+	0.56701	(0.53,0.59]	chr14	1132932	2	UTR3	UTR3:EXON_MRNA	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000557268.5:ENST00000350249.7:ENST00000334743.9:ENST00000554147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.27113	2.6405149999999997	3.0099	0.0178853	0.00600486	0.0918323	0.042887
chr17	51178310	51178408	16587716	0	-	0.408163	(0.39,0.42]	chr17	1363528	10	UTR3	UTR3:EXON_MRNA	MBTD1	ENSG00000011258.16	ENST00000586178.6:ENST00000415868.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.49701	2.640505	2.784	0.0339607	0.00261393	0.141431	0.0230705
chr2	38298315	38298402	2602715	0	-	0.390805	(0.39,0.42]	chr2	234407	3	CDS	CDS:UTR3:EXON_MRNA	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000629272.2:ENST00000477642.5:ENST00000489896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.49701	2.640505	2.784	0.0339607	0.00261393	0.141431	0.0230705
chr6	37172995	37173083	7136281	0	+	0.636364	(0.59,1]	chr6	549945	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PIM1	ENSG00000137193.14	ENST00000373509.6:ENST00000468243.5:ENST00000479509.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	336	2	2.43282	2.64023	2.84764	9.17427e-5	4.16267e-5	0.00183796	8.84997e-4
chr16	22534418	22534516	15591470	0	+	0.591837	(0.59,1]	chr16	1236299	8	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000415833.6:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000528249.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	64	2	1.96416	2.640165	3.31617	0.044741	3.02114e-4	0.166115	0.00472028
chr10	28616172	28616267	10990594	0	+	0.421053	(0.42,0.455]	chr10	835905	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6:ENST00000480474.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	57	2	2.07515	2.6401649999999997	3.20518	0.00239083	6.88593e-5	0.0217482	0.00146004
chr12	54238161	54238261	13342908	0	-	0.36	(0.33,0.36]	chr12	1049602	68	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.8112	2.6401399999999997	3.46908	0.0257865	0.00114872	0.116737	0.0130528
chr1	37998973	37999060	950344	0	-	0.586207	(0.53,0.59]	chr1	100162	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5:ENST00000483132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	26	2	2.2596	2.6400699999999997	3.02054	0.0185443	0.00577011	0.0948733	0.0426551
chr5	176388919	176388973	6401934	0	+	0.537037	(0.53,0.59]	chr5	497299	1	CDS	CDS:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.2596	2.6400699999999997	3.02054	0.0185443	0.00577011	0.0948733	0.0426551
chr8	143586218	143586290	10145172	0	-	0.583333	(0.53,0.59]	chr8	762509	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EEF1D	ENSG00000104529.18	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000618139.3:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000526838.5:ENST00000532741.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1:ENST00000526786.5:ENST00000530616.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.65775	2.639895	3.62204	0.0573191	4.3021e-4	0.196623	0.00620274
chr6	31777593	31777662	7662373	0	-	0.536232	(0.53,0.59]	chr6	585247	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000470953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.36991	2.639845	2.90978	0.00857883	0.00501452	0.0552386	0.0370872
chr6	159679210	159679310	8048197	0	-	0.42	(0.39,0.42]	chr6	615183	103	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	42	2	2.5371	2.639765	2.74243	0.00369167	5.20981e-4	0.030936	0.00674037
chrX	55009116	55009179	19084553	0	-	0.603175	(0.59,1]	chrX	1623729	2	UTR3	UTR3:EXON_MRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	2.04605	2.639765	3.23348	0.0103872	0.00352837	0.0640167	0.0298518
chr5	113015067	113015166	6153909	0	+	0.292929	(0.29,0.33]	chr5	480731	17	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	36	2	1.99403	2.6397399999999998	3.28545	0.0202925	4.11768e-5	0.098158	8.82748e-4
chr10	70233327	70233380	11560928	0	-	0.773585	(0.59,1]	chr10	879682	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	2.36593	2.639605	2.91328	0.0141097	5.13816e-4	0.077233	0.00665221
chr15	58643885	58643978	15311151	0	-	0.397849	(0.39,0.42]	chr15	1208325	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	2.18155	2.639455	3.09736	0.0283931	5.79886e-4	0.127654	0.00734771
chr3	8880658	8880758	4024634	0	-	0.29	[0,0.29]	chr3	337801	37	UTR3	UTR3:EXON_MRNA:INTRON	RAD18	ENSG00000070950.10	ENST00000427329.5:ENST00000264926.7	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.20534	2.6394200000000003	3.0735	0.0117033	0.00785095	0.0685676	0.0520241
chr2	74159172	74159254	2740264	0	-	0.390244	(0.39,0.42]	chr2	243888	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	53	2	2.27503	2.6393950000000004	3.00376	0.0025739	6.87502e-5	0.0235767	0.00133223
chr7	151076012	151076099	8617539	0	+	0.678161	(0.59,1]	chr7	658390	1	CDS	CDS:UTR3:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000469467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	51	2	1.99004	2.639325	3.28861	0.0214639	0.0028753	0.102904	0.0256141
chr1	32334027	32334122	922170	0	-	0.389474	(0.36,0.39]	chr1	97099	3	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	16	80	2	2.56277	2.639275	2.71578	7.50039e-5	5.05085e-5	0.00157609	0.00103686
chr2	96286687	96286782	2790389	0	-	0.578947	(0.53,0.59]	chr2	248745	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000480615.1:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	106	2	2.4557	2.639135	2.82257	2.78917e-4	2.50989e-5	0.00447039	5.82876e-4
chr1	203308421	203308520	668392	0	+	0.555556	(0.53,0.59]	chr1	67323	11	UTR3	UTR3:EXON_MRNA:INTRON	BTG2	ENSG00000159388.6	ENST00000475157.1:ENST00000290551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	34	2	2.63316	2.638955	2.64475	0.00474401	0.00453071	0.0361423	0.0351187
chr2	47160379	47160478	2631440	0	-	0.383838	(0.36,0.39]	chr2	236916	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	70	2	2.2618	2.638715	3.01563	0.00119438	1.08601e-5	0.0134155	2.94718e-4
chr21	43694081	43694181	18135735	0	+	0.68	(0.59,1]	chr21	1538248	8	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	33	2	2.28778	2.63845	2.9891200000000002	0.0556537	0.00823979	0.191528	0.0540283
chr7	107919646	107919743	8457484	0	+	0.298969	(0.29,0.33]	chr7	646335	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	2.14478	2.6384499999999997	3.13212	0.00551048	0.00445138	0.0414592	0.0340751
chr6	8102434	8102521	7590215	0	-	0.586207	(0.53,0.59]	chr6	579012	1	CDS_START	CDS_START:CDS:EXON_MRNA	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10:ENST00000507463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	1.65775	2.6381550000000002	3.61856	0.0573191	0.0303021	0.196623	0.129773
chr18	59328020	59328119	17142313	0	-	0.292929	(0.29,0.33]	chr18	1407602	3	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.63796	2.638045	2.63813	0.00803229	6.9438e-4	0.0528968	0.00846751
chr1	182388637	182388737	1401268	0	-	0.49	(0.455,0.49]	chr1	141707	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	75	2	2.02626	2.638015	3.24977	8.65723e-4	4.77546e-5	0.0106337	9.90649e-4
chr9	83973285	83973342	10712922	0	-	0.421053	(0.42,0.455]	chr9	810512	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000376256.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	76	2	2.29236	2.637965	2.98357	4.96621e-4	3.24557e-5	0.00648267	7.95671e-4
chr7	135928737	135928836	9085568	0	-	0.333333	(0.33,0.36]	chr7	693646	21	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	15	84	2	2.07183	2.6379099999999998	3.20399	0.00373558	5.88641e-7	0.0312668	2.54355e-5
chr2	208251451	208251551	3142583	0	-	0.38	(0.36,0.39]	chr2	277724	1	CDS_START	CDS_START:CDS:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000415282.5:ENST00000462386.5:ENST00000417583.5:ENST00000451391.5:ENST00000481557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.48922	2.637905	2.78659	0.0132982	0.0110399	0.0740932	0.0652374
chr17	48626169	48626269	16578607	0	-	0.52	(0.49,0.53]	chr17	1361946	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	46	2	1.64924	2.637855	3.62647	0.0286659	2.59929e-5	0.126175	6.68294e-4
chr19	49490778	49490839	17370753	0	+	0.590164	(0.59,1]	chr19	1443126	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1:ENST00000474171.1:ENST00000468655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	521	2	2.12731	2.6377800000000002	3.14825	4.20099e-4	3.7621e-7	0.00611538	1.73294e-5
chr3	129277685	129277773	3730641	0	+	0.318182	(0.29,0.33]	chr3	318988	4	UTR3	UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.35474	2.637695	2.92065	0.0117842	0.00297618	0.0686664	0.0254769
chr8	58582206	58582299	9351276	0	+	0.311828	(0.29,0.33]	chr8	715167	6	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000523483.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.35474	2.637695	2.92065	0.0117842	0.00297618	0.0686664	0.0254769
chr11	125620810	125620909	12194550	0	+	0.333333	(0.33,0.36]	chr11	940807	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000525946.5:ENST00000526364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	55	2	2.27433	2.637645	3.00096	0.00200332	2.7944e-5	0.0196867	6.3975e-4
chr5	95795875	95795972	6108515	0	+	0.350515	(0.33,0.36]	chr5	478272	20	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	14	63	2	2.13794	2.63755	3.13716	9.42656e-4	1.59791e-5	0.0106522	4.46084e-4
chr16	69340193	69340283	15723523	0	+	0.488889	(0.455,0.49]	chr16	1252002	1	CDS	CDS:EXON_MRNA	NIP7	ENSG00000132603.15	ENST00000563364.3:ENST00000569637.6:ENST00000254940.10:ENST00000254941.6:ENST00000565034.1:ENST00000562131.1:ENST00000567202.5:ENST00000562523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.53286	2.637485	2.74211	0.0282409	0.00330545	0.124386	0.028478
chr1	10461290	10461389	856673	0	-	0.464646	(0.455,0.49]	chr1	86469	49	UTR3	UTR3:EXON_MRNA	DFFA	ENSG00000160049.12	ENST00000377038.8	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	1.7301	2.637355	3.54461	0.0168678	4.40117e-5	0.0889456	9.24938e-4
chr8	116755697	116755797	10035030	0	-	0.64	(0.59,1]	chr8	755394	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	133	2	2.35778	2.6372299999999997	2.91668	5.55385e-4	5.47942e-4	0.00756447	0.00705776
chr19	34377502	34377586	17300320	0	+	0.607143	(0.59,1]	chr19	1429840	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000590375.5:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	172	2	2.16689	2.63718	3.10747	0.00209758	1.66525e-5	0.0204266	4.21393e-4
chr22	19722484	19722582	18295902	0	+	0.755102	(0.59,1]	chr22	1552883	1	UTR3	UTR3:EXON_MRNA	SEPTIN5:SEPT5-GP1BB	ENSG00000184702.20:ENSG00000284874.1	ENST00000455784.7:ENST00000406395.5:ENST00000406172.6:ENST00000455843.5:ENST00000383045.7:ENST00000438754.6:ENST00000431044.5:ENST00000470814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.42639	2.6369350000000003	2.84748	0.0409084	0.0124539	0.163285	0.0712518
chrM	2622	2719	19377165	0	+	0.505155	(0.49,0.53]	chrM	1649798	22	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	2179	13335	2	2.54511	2.6368850000000004	2.72866	9.7685e-8	1.13558e-8	5.46951e-6	9.48087e-7
chr10	7788176	7788207	10915853	0	+	0.645161	(0.59,1]	chr10	831306	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000462760.1:ENST00000460362.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000460820.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	32	2	2.4994	2.63679	2.77418	0.0333573	0.0160729	0.137922	0.0860154
chr15	56733457	56733546	15303163	0	-	0.595506	(0.59,1]	chr15	1208002	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF280D:RP11-566D24.2	ENSG00000137871.21:ENSG00000285253.1	ENST00000267807.12:ENST00000559237.5:ENST00000559000.6:ENST00000558002.5:ENST00000558320.5:ENST00000559352.1:ENST00000560298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	44	2	2.61074	2.6367399999999996	2.66274	0.025486	0.00482151	0.117089	0.0365653
chr4	75645230	75645329	5472865	0	-	0.313131	(0.29,0.33]	chr4	438361	35	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	45	2	2.19551	2.636665	3.07782	0.00356761	4.58926e-5	0.0301227	9.56296e-4
chr19	11123173	11123258	17230216	0	+	0.6	(0.59,1]	chr19	1419618	1	CDS	CDS:EXON_MRNA	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.25537	2.636645	3.01792	0.00890868	0.00111911	0.0567495	0.0121894
chr12	57720809	57720909	12904349	0	+	0.62	(0.59,1]	chr12	1005909	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000552285.5:ENST00000315970.12:ENST00000439210.6:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389146.10:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	68	2	2.42199	2.63661	2.85123	0.00475078	0.0022846	0.0367332	0.0209856
chr12	6525582	6525649	12713492	0	+	0.567164	(0.53,0.59]	chr12	986581	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000542492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	2.37399	2.636575	2.89916	0.0126178	0.00890406	0.0717599	0.0565003
chr17	41523842	41523919	16542250	0	-	0.584416	(0.53,0.59]	chr17	1355969	1	CDS	CDS:EXON_MRNA	KRT19	ENSG00000171345.13	ENST00000361566.7:ENST00000468880.1:ENST00000593096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.37399	2.636575	2.89916	0.0126178	0.00890406	0.0717599	0.0565003
chrX	53537625	53537696	19077201	0	-	0.535211	(0.53,0.59]	chrX	1622654	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000480438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.37399	2.636575	2.89916	0.0126178	0.00890406	0.0717599	0.0565003
chr10	102160817	102160909	11226663	0	+	0.532609	(0.53,0.59]	chr10	854863	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	26	2	2.16037	2.6365600000000002	3.11275	0.0254312	0.00407571	0.117089	0.032143
chr12	57233826	57233904	12902147	0	+	0.589744	(0.53,0.59]	chr12	1005211	2	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1:ENST00000556798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.16037	2.6365600000000002	3.11275	0.0254312	0.00407571	0.117089	0.032143
chr17	63590939	63591038	16317563	0	+	0.474747	(0.455,0.49]	chr17	1323671	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	71	2	2.3919	2.636555	2.88121	2.69792e-4	1.57495e-4	0.00402504	0.002844
chr11	46382649	46382713	11935307	0	+	0.609375	(0.59,1]	chr11	912490	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MDK	ENSG00000110492.16	ENST00000405308.6:ENST00000490240.5:ENST00000359803.7:ENST00000533952.5:ENST00000617138.4:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000481047.1:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	168	2	2.20941	2.6365100000000004	3.06361	0.00355442	1.30382e-5	0.0300236	3.42684e-4
chr8	116856645	116856708	10035265	0	-	0.47619	(0.455,0.49]	chr8	755451	1	CDS	CDS:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.61715	2.6363000000000003	3.65545	0.0342264	3.50134e-4	0.142155	0.0049086
chr20	56397206	56397298	17834445	0	+	0.478261	(0.455,0.49]	chr20	1507897	1	CDS	CDS:UTR3:EXON_MRNA	CSTF1	ENSG00000101138.12	ENST00000415828.5:ENST00000428552.1:ENST00000217109.9:ENST00000452950.1:ENST00000493039.5:ENST00000490539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	1.96875	2.636295	3.30384	0.0480352	0.00184955	0.180552	0.0178046
chrX	134500175	134500274	18863977	0	+	0.323232	(0.29,0.33]	chrX	1607407	2	UTR3	UTR3:EXON_MRNA:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	86	2	2.37225	2.63627	2.90029	2.08307e-4	4.54177e-6	0.00352647	1.42842e-4
chr12	32726564	32726656	13284216	0	-	0.445652	(0.42,0.455]	chr12	1041571	3	EXON_PSEUDO	EXON_PSEUDO	RP11-278C7.1	ENSG00000257511.1	ENST00000550917.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	31	2	2.03532	2.636195	3.23707	0.040947	2.71467e-4	0.163285	0.00404536
chr22	21695393	21695490	18303763	0	+	0.587629	(0.53,0.59]	chr22	1554381	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1:ENST00000680573.1:ENST00000681612.1:ENST00000462188.1:ENST00000681027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	26	2	2.36244	2.63611	2.90978	0.0131162	0.00857883	0.073569	0.0552386
chr20	34285439	34285536	17946712	0	-	0.546392	(0.53,0.59]	chr20	1519959	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	AHCY:CTD-3216D2.5	ENSG00000101444.13:ENSG00000272945.1	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5:ENST00000609218.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	10	77	2	2.4751	2.63596	2.79682	7.16255e-4	1.07815e-4	0.00901405	0.00192599
chr3	37016718	37016817	4118138	0	-	0.575758	(0.53,0.59]	chr3	344290	3	EXON_PSEUDO	EXON_PSEUDO	RPL29P11	ENSG00000224858.5	ENST00000494408.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	49	2	2.56002	2.635915	2.71181	0.00634904	3.99651e-4	0.0446708	0.0054764
chr5	168548992	168549092	6968907	0	-	0.31	(0.29,0.33]	chr5	532791	6	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.34203	2.63576	2.92949	0.010113	3.73367e-4	0.0626311	0.00519568
chr1	244706575	244706673	804417	0	+	0.418367	(0.39,0.42]	chr1	80056	9	UTR3	UTR3:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.38313	2.635745	2.88836	0.0128066	0.0102432	0.0725185	0.062872
chr18	35337506	35337594	17076692	0	-	0.397727	(0.39,0.42]	chr18	1402844	3	CDS	CDS:UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.38313	2.635745	2.88836	0.0128066	0.0102432	0.0725185	0.062872
chr20	47209790	47209886	17993105	0	-	0.416667	(0.39,0.42]	chr20	1524924	7	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.38313	2.635745	2.88836	0.0128066	0.0102432	0.0725185	0.062872
chr4	150817190	150817257	5731014	0	-	0.41791	(0.39,0.42]	chr4	452851	2	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.38313	2.635745	2.88836	0.0128066	0.0102432	0.0725185	0.062872
chr17	28573442	28573525	16485912	0	-	0.542169	(0.53,0.59]	chr17	1347737	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	131	2	2.00224	2.635605	3.26897	0.00247412	4.5359e-7	0.0231065	2.03851e-5
chrX	119243626	119243720	18840475	0	+	0.329787	(0.29,0.33]	chrX	1605479	5	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	12	58	2	1.61533	2.63556	3.65579	0.0237602	5.45263e-7	0.112145	2.38626e-5
chr6	143507236	143507330	8005361	0	-	0.37234	(0.36,0.39]	chr6	611769	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUCA2	ENSG00000001036.14	ENST00000002165.11:ENST00000367585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	76	2	2.08367	2.6355000000000004	3.18733	0.00219806	2.85393e-6	0.0209987	9.65561e-5
chr17	68531542	68531641	16337429	0	+	0.343434	(0.33,0.36]	chr17	1325397	12	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000588188.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	62	2	2.18962	2.635475	3.08133	5.6635e-4	4.29339e-5	0.0077844	9.09187e-4
chr2	86144099	86144183	2772777	0	-	0.333333	(0.33,0.36]	chr2	246307	3	UTR3	UTR3:EXON_MRNA	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.51887	2.635395	2.75192	0.0358636	0.00318114	0.147298	0.0267094
chr5	75372751	75372851	6645206	0	-	0.35	(0.33,0.36]	chr5	513404	44	UTR3	UTR3:EXON_MRNA:INTRON	CERT1	ENSG00000113163.19	ENST00000646172.1:ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000357457.9:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.51887	2.635395	2.75192	0.0358636	0.00318114	0.147298	0.0267094
chr6	119348462	119348545	7921023	0	-	0.650602	(0.59,1]	chr6	606539	1	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	7	116	2	1.79051	2.635375	3.4802399999999998	0.0396851	7.412e-6	0.161349	2.16033e-4
chr1	150218811	150218910	1288421	0	-	0.232323	[0,0.29]	chr1	128126	5	UTR3	UTR3:EXON_MRNA	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	2.03267	2.6353549999999997	3.23804	0.0131453	5.85812e-5	0.0733537	0.00117676
chr15	60386027	60386075	15317100	0	-	0.479167	(0.455,0.49]	chr15	1208992	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5:ENST00000560546.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	1.95898	2.635345	3.31171	0.047107	1.87327e-4	0.172269	0.00325006
chr2	178431917	178432006	3039707	0	-	0.303371	(0.29,0.33]	chr2	268857	8	UTR3	UTR3:EXON_MRNA	PRKRA	ENSG00000180228.14	ENST00000677859.1:ENST00000325748.9:ENST00000490501.5:ENST00000678775.1:ENST00000677689.1:ENST00000676922.1:ENST00000676832.1:ENST00000677584.1:ENST00000678053.1:ENST00000679037.1:ENST00000678845.1:ENST00000677981.1:ENST00000677206.1:ENST00000676505.1:ENST00000448279.2:ENST00000676586.1:ENST00000474793.6:ENST00000677136.1:ENST00000677386.1:ENST00000677460.1:ENST00000678167.1:ENST00000677253.1:ENST00000457633.2:ENST00000678058.1:ENST00000679202.1:ENST00000676752.1:ENST00000424699.5:ENST00000487082.5:ENST00000432031.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	38	2	2.39609	2.6353400000000002	2.87459	0.0040115	1.72733e-4	0.0324137	0.00280648
chr6	27126333	27126421	7648651	0	-	0.488636	(0.455,0.49]	chr6	582708	6	UTR3	UTR3:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.30139	2.63532	2.96925	0.0530131	0.00698725	0.195536	0.0473262
chr7	135576269	135576341	8552576	0	+	0.472222	(0.455,0.49]	chr7	652697	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.30139	2.63532	2.96925	0.0530131	0.00698725	0.195536	0.0473262
chr9	120873978	120874060	10834329	0	-	0.463415	(0.455,0.49]	chr9	820595	1	CDS	CDS:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10:ENST00000456291.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.30139	2.63532	2.96925	0.0530131	0.00698725	0.195536	0.0473262
chr9	37132538	37132638	10252965	0	+	0.42	(0.39,0.42]	chr9	771594	52	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	30	2	2.59744	2.6352	2.67296	0.00572981	0.00159022	0.0417368	0.0168452
chr7	127652193	127652283	8514928	0	+	0.711111	(0.59,1]	chr7	649640	1	UTR5	UTR5:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000463020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	222	2	2.45572	2.635185	2.81465	5.06706e-4	2.16601e-5	0.00709888	5.16988e-4
chr1	167426348	167426448	523034	0	+	0.3	(0.29,0.33]	chr1	56157	104	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	25	2	2.63162	2.634875	2.63813	0.00803229	0.00179843	0.0528968	0.0174371
chr1	225983401	225983501	1531399	0	-	0.31	(0.29,0.33]	chr1	153219	8	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.63162	2.634875	2.63813	0.00803229	0.00179843	0.0528968	0.0174371
chr19	46719786	46719878	17595153	0	-	0.673913	(0.59,1]	chr19	1481276	4	UTR3	UTR3:EXON_MRNA	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000594581.5:ENST00000601869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	51	2	1.90752	2.634875	3.36223	0.0282297	0.00203572	0.127287	0.0192213
chr7	139045802	139045901	9102039	0	-	0.313131	(0.29,0.33]	chr7	694516	24	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.63162	2.634875	2.63813	0.00803229	0.00179843	0.0528968	0.0174371
chr5	88206438	88206499	6685323	0	-	0.360656	(0.36,0.39]	chr5	515511	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMEM161B	ENSG00000164180.14	ENST00000514135.5:ENST00000296595.11:ENST00000511087.5:ENST00000510089.5:ENST00000506536.5:ENST00000511218.5:ENST00000512429.5:ENST00000507872.1:ENST00000509387.5:ENST00000503755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	25	2	2.32678	2.63482	2.94286	0.0193538	0.00128446	0.0943643	0.0136229
chr11	119093183	119093283	12162028	0	+	0.53	(0.49,0.53]	chr11	937746	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000542044.5:ENST00000544387.5:ENST00000543090.5:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648374.1:ENST00000544182.1:ENST00000539045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	54	2	2.5375	2.6347300000000002	2.73196	0.00104367	3.65807e-4	0.0115928	0.0054989
chr3	152445367	152445453	3818322	0	+	0.453488	(0.42,0.455]	chr3	325666	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.22933	2.63468	3.04003	0.0102262	7.68268e-4	0.062872	0.00916171
chr5	138933989	138934089	6248100	0	+	0.51	(0.49,0.53]	chr5	486856	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000520520.1:ENST00000522792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	2.21413	2.6346249999999998	3.05512	0.00995539	1.59562e-4	0.0621728	0.00263091
chr20	36592785	36592882	17776916	0	+	0.391753	(0.39,0.42]	chr20	1501907	13	UTR3	UTR3:EXON_MRNA:INTRON	TGIF2:TGIF2-RAB5IF	ENSG00000118707.11:ENSG00000259399.1	ENST00000373874.6:ENST00000373872.9:ENST00000558530.1:ENST00000611732.4	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	1.97465	2.6345799999999997	3.29451	0.00476181	1.98354e-4	0.036813	0.00314412
chr17	28720005	28720030	16177251	0	+	0.56	(0.53,0.59]	chr17	1305474	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	174	2	2.50329	2.63439	2.76549	1.34856e-4	2.45812e-6	0.00249892	8.56405e-5
chr15	78892262	78892313	15042602	0	+	0.431373	(0.42,0.455]	chr15	1183456	2	CDS	CDS:EXON_MRNA:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000558893.5:ENST00000558830.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559751.1:ENST00000558923.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	26	2	1.71996	2.63417	3.54838	0.0542346	5.9986e-4	0.199653	0.0075062
chr6	17626074	17626164	7618983	0	-	0.444444	(0.42,0.455]	chr6	580528	4	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.71996	2.63417	3.54838	0.0542346	5.9986e-4	0.199653	0.0075062
chr5	75342605	75342705	6036962	0	+	0.5	(0.49,0.53]	chr5	473588	1	CDS_START	CDS_START:CDS:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000509431.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000442032.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	40	2	2.16719	2.634145	3.1011	0.00606444	5.69237e-4	0.0432957	0.00778538
chr7	100627339	100627415	8952228	0	-	0.75	(0.59,1]	chr7	684162	2	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000461176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	70	2	2.47837	2.63395	2.78953	0.00970721	9.28839e-4	0.0608296	0.0105151
chr12	56598032	56598129	13351662	0	-	0.546392	(0.53,0.59]	chr12	1051592	26	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	2.62309	2.63392	2.64475	0.00453071	0.00065129300000000005	0.0351187	0.00805846
chr9	34389996	34390051	10636210	0	-	0.418182	(0.39,0.42]	chr9	804165	2	EXON_SMALL	EXON_SMALL:INTRON	C9orf24:Y_RNA	ENSG00000164972.13:ENSG00000207032.1	ENST00000297623.7:ENST00000444429.1:ENST00000384305.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	11	65	2	1.83322	2.633875	3.43453	0.00911513	3.22227e-6	0.0578044	1.07321e-4
chr1	26731151	26731241	110494	0	+	0.533333	(0.53,0.59]	chr1	13259	1	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	10	80	2	2.19975	2.63384	3.06793	0.00293564	1.78012e-5	0.0261315	4.43767e-4
chr1	150578243	150578325	1288962	0	-	0.463415	(0.455,0.49]	chr1	128253	1	CDS	CDS:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	38	2	2.0008	2.633515	3.26623	0.0129467	2.31662e-4	0.0724783	0.00354314
chr15	48878740	48878835	14921711	0	+	0.4	(0.39,0.42]	chr15	1173117	1	UTR3	UTR3:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3:ENST00000560490.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.31773	2.63345	2.94917	0.00382583	0.00121791	0.0319415	0.0130188
chr22	41893385	41893485	18383811	0	+	0.39	(0.36,0.39]	chr22	1565063	1	SS5_PROX	SS5_PROX:INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	42	2	2.1437	2.633435	3.12317	0.0340515	3.13585e-5	0.141465	6.98935e-4
chr7	128972503	128972582	9060345	0	-	0.531646	(0.53,0.59]	chr7	691773	2	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.15403	2.6333900000000003	3.11275	0.0118065	0.00407571	0.0686664	0.032143
chr16	88696995	88697090	16074263	0	-	0.315789	(0.29,0.33]	chr16	1291562	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RNF166	ENSG00000158717.11	ENST00000562544.1:ENST00000567408.1:ENST00000312838.9:ENST00000537718.6:ENST00000541206.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.59395	2.6333599999999997	2.67277	0.0255386	0.0249836	0.117089	0.114013
chr2	61190587	61190658	2687407	0	-	0.323944	(0.29,0.33]	chr2	239916	2	CDS	CDS:EXON_MRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1:ENST00000463046.5:ENST00000490552.1:ENST00000498268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	2.59395	2.6333599999999997	2.67277	0.0255386	0.0249836	0.117089	0.114013
chr3	9386026	9386121	3297515	0	+	0.315789	(0.29,0.33]	chr3	289403	15	UTR3	UTR3:EXON_MRNA	THUMPD3	ENSG00000134077.16	ENST00000345094.7:ENST00000452837.7	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.59395	2.6333599999999997	2.67277	0.0255386	0.0249836	0.117089	0.114013
chr7	121174834	121174934	8495608	0	+	0.32	(0.29,0.33]	chr7	648409	248	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.59395	2.6333599999999997	2.67277	0.0255386	0.0249836	0.117089	0.114013
chr8	51819160	51819259	9823491	0	-	0.323232	(0.29,0.33]	chr8	743254	17	UTR3	UTR3:EXON_MRNA	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.59395	2.6333599999999997	2.67277	0.0255386	0.0249836	0.117089	0.114013
chr5	86618055	86618130	6073030	0	+	0.6	(0.59,1]	chr5	476380	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COX7C	ENSG00000127184.13	ENST00000511472.5:ENST00000247655.4:ENST00000505430.5:ENST00000509578.1:ENST00000515763.1:ENST00000513124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	199	2	2.25842	2.63312	3.00782	5.72512e-4	3.62241e-5	0.00726471	8.7552e-4
chr9	129006578	129006678	10482858	0	+	0.58	(0.53,0.59]	chr9	791186	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	2.27113	2.63312	2.99511	0.0178853	9.46531e-4	0.0918323	0.010681
chr2	32490040	32490095	1713765	0	+	0.418182	(0.39,0.42]	chr2	168205	1	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.37759	2.632975	2.88836	0.0428865	0.0102432	0.161091	0.062872
chr7	100632081	100632139	8952286	0	-	0.603448	(0.59,1]	chr7	684197	1	CDS	CDS:EXON_MRNA:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	1.97731	2.6329599999999997	3.28861	0.00878719	0.0028753	0.0562439	0.0256141
chr12	110724711	110724764	13539268	0	-	0.283019	[0,0.29]	chr12	1065119	2	CDS	CDS:EXON_MRNA:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	33	2	2.30015	2.63274	2.96533	0.0024246	0.00128723	0.0227938	0.0136506
chr12	57233179	57233262	12902139	0	+	0.578313	(0.53,0.59]	chr12	1005207	1	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000555563.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.14205	2.6327249999999998	3.1234	0.0123179	0.00390623	0.070688	0.0322851
chr19	55643115	55643204	17397012	0	+	0.550562	(0.53,0.59]	chr19	1448833	2	UTR3	UTR3:EXON_MRNA:INTRON	ZNF581:ZNF580:CCDC106	ENSG00000171425.10:ENSG00000213015.9:ENSG00000173581.8	ENST00000587252.5:ENST00000325333.10:ENST00000585995.1:ENST00000592996.5:ENST00000543039.2:ENST00000545125.1	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.14205	2.6327249999999998	3.1234	0.0123179	0.00390623	0.070688	0.0322851
chr16	1839254	1839346	15823054	0	-	0.51087	(0.49,0.53]	chr16	1261668	1	CDS	CDS:EXON_MRNA	MEIOB	ENSG00000162039.17	ENST00000325962.9:ENST00000470044.5:ENST00000397344.7:ENST00000490154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.56183	2.63245	2.70307	0.0261296	0.00363585	0.118976	0.0298137
chr5	154803676	154803745	6314894	0	+	0.507246	(0.49,0.53]	chr5	492477	3	CDS	CDS:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6:ENST00000524248.5:ENST00000518677.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.56183	2.63245	2.70307	0.0261296	0.00363585	0.118976	0.0298137
chr6	10724555	10724613	7048554	0	+	0.517241	(0.49,0.53]	chr6	539743	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5:ENST00000495549.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.56183	2.63245	2.70307	0.0261296	0.00363585	0.118976	0.0298137
chr9	105694660	105694760	10400161	0	+	0.53	(0.49,0.53]	chr9	783644	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	TMEM38B	ENSG00000095209.12	ENST00000374692.8:ENST00000434214.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.56183	2.63245	2.70307	0.0261296	0.00363585	0.118976	0.0298137
chrX	53600213	53600309	19077898	0	-	0.520833	(0.49,0.53]	chrX	1622915	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.56183	2.63245	2.70307	0.0261296	0.00363585	0.118976	0.0298137
chr4	78912229	78912328	4912706	0	+	0.444444	(0.42,0.455]	chr4	404414	3	UTR3	UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.20599	2.63244	3.05889	0.0227797	0.00524205	0.105293	0.0399155
chr4	145377575	145377670	5146243	0	+	0.421053	(0.42,0.455]	chr4	416392	8	EXON_MRNA	EXON_MRNA	RP11-142A22.3	ENSG00000278943.1	ENST00000624774.1	TEC	TEC	TEC	TEC	3	21	2	2.20599	2.63244	3.05889	0.0227797	0.00524205	0.105293	0.0399155
chr1	114707154	114707254	1239477	0	-	0.31	(0.29,0.33]	chr1	121309	28	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.24226	2.632345	3.02243	0.0306054	9.33835e-4	0.130226	0.0105624
chr14	52641099	52641198	14630041	0	-	0.282828	[0,0.29]	chr14	1145962	13	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	8	31	2	1.79922	2.632275	3.46533	0.0223458	8.04462e-5	0.106042	0.00152269
chr2	17665299	17665398	2532933	0	-	0.282828	[0,0.29]	chr2	227814	16	UTR3	UTR3:EXON_MRNA	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000481708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.61628	2.632255	2.64823	0.0216669	0.0101434	0.103121	0.0626311
chr1	193029594	193029657	1428353	0	-	0.412698	(0.39,0.42]	chr1	143539	2	CDS	CDS:EXON_MRNA	UCHL5	ENSG00000116750.14	ENST00000367455.8:ENST00000367454.6:ENST00000367450.7:ENST00000367451.8:ENST00000367449.5:ENST00000367448.5:ENST00000421683.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.55844	2.632175	2.70591	0.0263695	0.0185716	0.117164	0.0932453
chr7	128330873	128330928	9058831	0	-	0.418182	(0.39,0.42]	chr7	691302	2	CDS	CDS:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.55844	2.632175	2.70591	0.0263695	0.0185716	0.117164	0.0932453
chr7	121141972	121142056	8495278	0	+	0.452381	(0.42,0.455]	chr7	648402	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	12	67	2	2.23261	2.63204	3.03147	5.07675e-4	2.02875e-4	0.00660682	0.0034429
chrX	139726639	139726737	19258518	0	-	0.346939	(0.33,0.36]	chrX	1635793	4	UTR3	UTR3:EXON_MRNA	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000327569.7:ENST00000361648.6:ENST00000433868.5:ENST00000450801.1	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	1.91461	2.63177	3.34893	0.0179419	2.22813e-4	0.0939469	0.00370775
chr13	46158586	46158651	14009943	0	-	0.369231	(0.36,0.39]	chr13	1098573	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.23949	2.63173	3.02397	0.00674398	0.00261122	0.0461258	0.0230705
chr1	212361360	212361459	702768	0	+	0.444444	(0.42,0.455]	chr1	71311	7	UTR3	UTR3:EXON_MRNA	PPP2R5A	ENSG00000066027.12	ENST00000261461.7	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	1.9028	2.631495	3.36019	0.0112346	2.44137e-5	0.0665375	6.30952e-4
chr8	144096583	144096663	9650300	0	+	0.65	(0.59,1]	chr8	731515	1	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000525122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.24397	2.630945	3.01792	0.0206682	0.00111911	0.0997234	0.0121894
chr3	179623979	179624040	3928915	0	+	0.360656	(0.36,0.39]	chr3	330264	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000482604.5:ENST00000480374.1:ENST00000473500.5:ENST00000471112.1:ENST00000476587.1:ENST00000493716.1:ENST00000680692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	47	2	2.02118	2.630735	3.24029	0.0251625	1.37288e-5	0.117055	3.56831e-4
chr12	9696267	9696367	12728916	0	+	0.36	(0.33,0.36]	chr12	989545	15	UTR3	UTR3:EXON_MRNA	CLEC2D	ENSG00000069493.15	ENST00000290855.11	protein_coding	protein_coding	protein_coding	protein_coding	13	63	2	2.55863	2.630725	2.70282	3.9745e-4	5.66153e-5	0.00588767	0.00114182
chr2	231256236	231256306	2424828	0	+	0.671429	(0.59,1]	chr2	218486	3	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	ARMC9:RPS28P4	ENSG00000135931.19:ENSG00000237039.1	ENST00000349938.8:ENST00000683165.1:ENST00000611582.5:ENST00000683275.1:ENST00000682002.1:ENST00000682334.1:ENST00000682027.1:ENST00000683271.1:ENST00000436339.6:ENST00000683702.1:ENST00000684011.1:ENST00000683107.1:ENST00000684432.1:ENST00000684565.1:ENST00000684051.1:ENST00000682100.1:ENST00000682367.1:ENST00000683063.1:ENST00000683112.1:ENST00000683814.1:ENST00000682233.1:ENST00000682030.1:ENST00000684718.1:ENST00000683321.1:ENST00000683040.1:ENST00000683966.1:ENST00000683553.1:ENST00000684368.1:ENST00000682264.1:ENST00000683575.1:ENST00000683629.1:ENST00000469789.2:ENST00000683520.1:ENST00000441378.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	5	63	2	2.41177	2.630605	2.84944	0.0128238	0.00235332	0.0719798	0.0215127
chr2	32618401	32618501	1715096	0	+	0.3	(0.29,0.33]	chr2	168405	6	UTR3	UTR3:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	2.17855	2.63058	3.08261	0.0183673	0.0048227	0.0928041	0.0365653
chr2	36849255	36849355	2594606	0	-	0.37	(0.36,0.39]	chr2	233508	117	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.62565	2.6304299999999996	2.63521	0.0219469	0.00633242	0.103959	0.0446708
chr2	10427318	10427418	1631142	0	+	0.44	(0.42,0.455]	chr2	161840	6	UTR3	UTR3:EXON_MRNA	HPCAL1	ENSG00000115756.13	ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	33	2	2.55474	2.630425	2.70611	0.00397496	0.00228741	0.0322851	0.0210026
chr11	884067	884118	12228458	0	-	0.529412	(0.49,0.53]	chr11	943952	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528521.1:ENST00000526714.5:ENST00000524832.5:ENST00000531010.1:ENST00000531859.5:ENST00000534254.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	1.92759	2.630415	3.33324	0.0267071	0.00162947	0.118504	0.0169972
chr5	53884717	53884814	6575901	0	-	0.350515	(0.33,0.36]	chr5	509078	9	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.93784	2.6302700000000003	3.3227	0.0278501	0.00222616	0.123353	0.0211992
chr10	80519371	80519470	11152039	0	+	0.474747	(0.455,0.49]	chr10	847928	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	2.26324	2.6301050000000004	2.99697	0.00868189	9.57891e-4	0.0558093	0.0107247
chr4	56451871	56451961	4848646	0	+	0.422222	(0.42,0.455]	chr4	399459	1	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	13	76	2	2.36027	2.630025	2.89978	3.27999e-4	5.81698e-5	0.00467073	0.00128763
chr2	215312481	215312581	2376893	0	+	0.46	(0.455,0.49]	chr2	213490	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATIC	ENSG00000138363.15	ENST00000444305.5:ENST00000488712.5:ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5:ENST00000413174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.56938	2.629955	2.69053	0.0182983	0.00635313	0.0925808	0.0449666
chr20	31794401	31794474	17749918	0	+	0.465753	(0.455,0.49]	chr20	1498073	1	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.56938	2.629955	2.69053	0.0182983	0.00635313	0.0925808	0.0449666
chr15	52095656	52095747	14935572	0	+	0.483516	(0.455,0.49]	chr15	1174249	5	EXON_PSEUDO	EXON_PSEUDO	CTD-2184D3.1	ENSG00000242327.1	ENST00000486386.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	40	2	2.35972	2.629735	2.89975	0.0058634	3.94125e-4	0.0427941	0.00541075
chr9	112275928	112276013	10803456	0	-	0.435294	(0.42,0.455]	chr9	818479	2	CDS	CDS:EXON_MRNA:INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	41	2	2.22933	2.629715	3.0301	0.0102262	1.85605e-4	0.062872	0.00297242
chr6	30600696	30600790	7658377	0	-	0.585106	(0.53,0.59]	chr6	583973	4	UTR3	UTR3:EXON_MRNA	PPP1R10	ENSG00000204569.10	ENST00000376511.7	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.45844	2.6295200000000003	2.8006	0.00930921	0.00233666	0.0587563	0.0221314
chr1	28237836	28237878	115326	0	+	0.428571	(0.42,0.455]	chr1	14095	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP5IF1	ENSG00000130770.18	ENST00000497986.5:ENST00000335514.10:ENST00000468425.2:ENST00000465645.1	protein_coding	protein_coding	protein_coding	protein_coding	13	78	2	2.52506	2.62952	2.73398	3.96345e-4	7.60153e-5	0.00587914	0.00144778
chr9	35718811	35718910	10639705	0	-	0.59596	(0.59,1]	chr9	805116	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	2.33806	2.629515	2.92097	0.0102634	0.00632881	0.0628742	0.0448545
chr16	46660273	46660372	15927116	0	-	0.424242	(0.42,0.455]	chr16	1277396	43	UTR3	UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	2.44942	2.62951	2.8096	0.00253237	0.0016479	0.0233955	0.0163521
chr1	37997962	37998047	950332	0	-	0.576471	(0.53,0.59]	chr1	100156	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	2.47	2.6294950000000004	2.78899	0.0089333	0.00245784	0.0567495	0.0221765
chr7	100677751	100677818	8428123	0	+	0.552239	(0.53,0.59]	chr7	643341	1	CDS	CDS:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000451587.5:ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000431068.5:ENST00000412215.5:ENST00000393924.1:ENST00000469287.5:ENST00000470354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	34	2	2.47	2.6294950000000004	2.78899	0.0089333	0.00245784	0.0567495	0.0221765
chr7	128997388	128997461	9060605	0	-	0.534247	(0.53,0.59]	chr7	691839	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.47	2.6294950000000004	2.78899	0.0089333	0.00245784	0.0567495	0.0221765
chrX	65739044	65739119	18716354	0	+	0.573333	(0.53,0.59]	chrX	1596879	2	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.47	2.6294950000000004	2.78899	0.0089333	0.00245784	0.0567495	0.0221765
chr1	52087450	52087549	192285	0	+	0.434343	(0.42,0.455]	chr1	24661	8	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr10	74618980	74619080	11122379	0	+	0.45	(0.42,0.455]	chr10	846402	181	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr10	84141600	84141629	11164506	0	+	0.448276	(0.42,0.455]	chr10	848121	1	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr11	6611245	6611303	12249881	0	-	0.448276	(0.42,0.455]	chr11	946820	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TAF10:RP11-732A19.10	ENSG00000166337.10:ENSG00000285338.1	ENST00000299424.9:ENST00000616342.1:ENST00000527248.2:ENST00000532191.2:ENST00000531760.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr17	3924151	3924246	16414119	0	-	0.452632	(0.42,0.455]	chr17	1336654	4	UTR3	UTR3:EXON_MRNA	ATP2A3	ENSG00000074370.18	ENST00000309890.11:ENST00000397041.8:ENST00000397035.7	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr20	37518412	37518511	17962214	0	-	0.444444	(0.42,0.455]	chr20	1522201	11	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr7	141636959	141637016	8575093	0	+	0.421053	(0.42,0.455]	chr7	654172	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000494688.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.50649	2.6293949999999997	2.7523	0.0302857	0.0153283	0.130016	0.0828908
chr20	32850010	32850109	17755873	0	+	0.414141	(0.39,0.42]	chr20	1498956	14	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	15	87	2	2.20389	2.629365	3.05484	0.00100255	3.99764e-6	0.0119197	1.28782e-4
chr1	207790252	207790304	690180	0	+	0.384615	(0.36,0.39]	chr1	70111	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000636114.1:ENST00000488596.5:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.92623	2.62932	3.33241	0.0166541	0.00193631	0.0881353	0.0192272
chr15	40663558	40663656	14883481	0	+	0.295918	(0.29,0.33]	chr15	1168843	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KNL1	ENSG00000137812.20	ENST00000346991.9:ENST00000399668.7:ENST00000526913.5:ENST00000531626.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	2.62025	2.62919	2.63813	0.00803229	0.00573581	0.0528968	0.0417422
chrX	155239041	155239141	18920370	0	+	0.37	(0.36,0.39]	chrX	1612534	3	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	1.85874	2.629175	3.39961	0.0415243	1.76848e-5	0.164804	4.41339e-4
chr9	131499902	131500000	10498835	0	+	0.418367	(0.39,0.42]	chr9	793636	42	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	50	2	1.66154	2.629085	3.59663	0.0452475	4.26553e-6	0.174743	1.35769e-4
chr12	76355788	76355888	13424335	0	-	0.37	(0.36,0.39]	chr12	1056701	41	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.32678	2.62907	2.93136	0.0193538	0.00811967	0.0943643	0.0528637
chr14	55068404	55068504	14298085	0	+	0.39	(0.36,0.39]	chr14	1117553	39	UTR3	UTR3:EXON_MRNA:INTRON	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.32678	2.62907	2.93136	0.0193538	0.00811967	0.0943643	0.0528637
chrX	85090546	85090645	18751858	0	+	0.373737	(0.36,0.39]	chrX	1600208	30	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.32678	2.62907	2.93136	0.0193538	0.00811967	0.0943643	0.0528637
chr2	177219596	177219695	2228539	0	+	0.323232	(0.29,0.33]	chr2	203394	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1:ENST00000432457.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	34	2	1.99385	2.629035	3.26422	0.00637284	2.56761e-4	0.0448323	0.00385453
chr6	8079691	8079790	7589981	0	-	0.252525	[0,0.29]	chr6	578979	4	UTR3	UTR3:EXON_MRNA:INTRON	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	59	2	2.41109	2.629015	2.84694	1.82473e-4	9.93215e-5	0.00294865	0.00195842
chr7	135929133	135929232	9085572	0	-	0.313131	(0.29,0.33]	chr7	693646	25	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	41	187	2	2.29094	2.628615	2.96629	6.70836e-5	6.16667e-8	0.00142615	3.69156e-6
chr14	73219189	73219289	14395305	0	+	0.37	(0.36,0.39]	chr14	1124567	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000406768.1:ENST00000555867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr2	8853487	8853587	2505680	0	-	0.39	(0.36,0.39]	chr2	226072	9	UTR3	UTR3:EXON_MRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr2	24770027	24770124	1682332	0	+	0.371134	(0.36,0.39]	chr2	164459	18	UTR3	UTR3:EXON_MRNA	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr2	53890103	53890155	2664351	0	-	0.384615	(0.36,0.39]	chr2	238167	1	CDS	CDS:UTR3:EXON_MRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr20	3932969	3933068	17883254	0	-	0.363636	(0.36,0.39]	chr20	1513717	58	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr4	17804321	17804411	5337604	0	-	0.366667	(0.36,0.39]	chr4	429244	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6:ENST00000507768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr5	138573762	138573783	6862550	0	-	0.380952	(0.36,0.39]	chr5	525250	1	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr6	108680221	108680320	7323117	0	+	0.383838	(0.36,0.39]	chr6	562727	5	UTR3	UTR3:EXON_MRNA	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2:ENST00000540898.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr7	106269232	106269312	8978069	0	-	0.375	(0.36,0.39]	chr7	687105	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000679461.1:ENST00000681936.1:ENST00000680152.1:ENST00000681887.1:ENST00000680129.1:ENST00000680786.1:ENST00000681223.1:ENST00000679717.1:ENST00000680516.1:ENST00000484527.6:ENST00000354289.9:ENST00000491027.6:ENST00000681297.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.62565	2.6284	2.63115	0.0245975	0.0219469	0.114841	0.103959
chr1	51788265	51788361	191699	0	+	0.291667	(0.29,0.33]	chr1	24578	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	32	2	2.39609	2.62834	2.86059	0.0040115	5.48907e-4	0.0324137	0.00697672
chr2	144388882	144388980	2929234	0	-	0.306122	(0.29,0.33]	chr2	259616	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZEB2	ENSG00000169554.22	ENST00000639389.1:ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000647488.1:ENST00000675069.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	32	2	2.39609	2.62834	2.86059	0.0040115	5.48907e-4	0.0324137	0.00697672
chr18	57550414	57550513	17137066	0	-	0.30303	(0.29,0.33]	chr18	1407062	62	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FECH	ENSG00000066926.13	ENST00000262093.11:ENST00000652755.1:ENST00000651787.1:ENST00000382873.8:ENST00000585494.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	38	2	2.17855	2.628185	3.07782	0.0183673	4.58926e-5	0.0928041	9.56296e-4
chr11	85974707	85974759	12525880	0	-	0.576923	(0.53,0.59]	chr11	972169	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	57	2	2.38191	2.628145	2.87438	0.00477439	1.55101e-4	0.0368489	0.00258327
chr3	13354010	13354107	4046592	0	-	0.649485	(0.59,1]	chr3	339637	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000479519.5:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	67	2	2.08001	2.628085	3.17616	0.00582883	0.00434232	0.0421606	0.0339139
chr1	235110507	235110604	1560077	0	-	0.443299	(0.42,0.455]	chr1	156012	13	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	34	217	2	2.21926	2.6280799999999997	3.0369	1.3783e-4	7.51421e-8	0.00254294	4.36274e-6
chr5	71658414	71658511	6026828	0	+	0.340206	(0.33,0.36]	chr5	472497	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCCC2	ENSG00000131844.17	ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000683339.1:ENST00000684530.1:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1:ENST00000684473.1:ENST00000682175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	43	2	2.05605	2.62784	3.19963	0.0063694	2.93591e-5	0.0449937	7.31344e-4
chr16	85675609	85675708	15798109	0	+	0.414141	(0.39,0.42]	chr16	1257094	32	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	69	2	1.88392	2.6275	3.37108	0.00419792	5.21879e-6	0.0328796	1.60277e-4
chr4	38688778	38688876	4796571	0	+	0.602041	(0.59,1]	chr4	395562	3	CDS	CDS:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	2.26579	2.6274550000000003	2.9891200000000002	0.00823979	0.00263137	0.0540283	0.0231864
chr5	175526831	175526928	6397792	0	+	0.453608	(0.42,0.455]	chr5	496826	2	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	60	2	1.89459	2.62739	3.36019	0.00432468	2.44137e-5	0.0335423	6.30952e-4
chr1	8867250	8867350	852436	0	-	0.48	(0.455,0.49]	chr1	85937	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2:ENST00000645609.1:ENST00000645600.1:ENST00000497492.1:ENST00000646660.1:ENST00000646680.1:ENST00000646906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	2.51261	2.62736	2.74211	0.00330545	0.00280343	0.028478	0.0242354
chr4	99074913	99074981	5548251	0	-	0.514706	(0.49,0.53]	chr4	443155	1	CDS	CDS:UTR3:EXON_MRNA	ADH5	ENSG00000197894.12	ENST00000296412.14:ENST00000626055.2:ENST00000512621.5:ENST00000512659.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.38204	2.62736	2.87268	0.0049129	0.00175078	0.0366648	0.0180053
chr16	87739175	87739274	16071809	0	-	0.535354	(0.53,0.59]	chr16	1291156	82	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	20	2	2.34461	2.627195	2.90978	0.0457008	0.00857883	0.168044	0.0552386
chr5	177490245	177490328	6991767	0	-	0.554217	(0.53,0.59]	chr5	534953	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PDLIM7	ENSG00000196923.14	ENST00000355841.7:ENST00000359895.6:ENST00000493815.5:ENST00000486828.6:ENST00000393551.5:ENST00000505074.5:ENST00000355572.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	20	2	2.34461	2.627195	2.90978	0.0457008	0.00857883	0.168044	0.0552386
chr1	155660141	155660238	1310548	0	-	0.56701	(0.53,0.59]	chr1	132517	5	CDS	CDS:UTR3:EXON_MRNA:EXON_PSEUDO	RP11-29H23.5:YY1AP1	ENSG00000246203.2:ENSG00000163374.20	ENST00000500626.2:ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:unprocessed_pseudogene	2	20	2	2.35511	2.627135	2.89916	0.0445399	0.00890406	0.172163	0.0565003
chr1	183546244	183546337	597947	0	+	0.55914	(0.53,0.59]	chr1	62104	4	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.35511	2.627135	2.89916	0.0445399	0.00890406	0.172163	0.0565003
chr16	30114276	30114362	15913025	0	-	0.546512	(0.53,0.59]	chr16	1274993	3	UTR3	UTR3:EXON_MRNA	MAPK3	ENSG00000102882.12	ENST00000466521.5:ENST00000263025.9:ENST00000322266.9:ENST00000484663.5:ENST00000490298.5:ENST00000485579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.35511	2.627135	2.89916	0.0445399	0.00890406	0.172163	0.0565003
chr17	45024034	45024133	16560946	0	-	0.565657	(0.53,0.59]	chr17	1359989	8	UTR3	UTR3:EXON_MRNA	DCAKD	ENSG00000172992.12	ENST00000452796.6:ENST00000342350.9:ENST00000651974.1:ENST00000310604.8:ENST00000614054.4	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.35511	2.627135	2.89916	0.0445399	0.00890406	0.172163	0.0565003
chr2	101019038	101019136	1957162	0	+	0.581633	(0.53,0.59]	chr2	185919	1	UTR3	UTR3:EXON_MRNA:INTRON	RPL31	ENSG00000071082.11	ENST00000409028.8:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding	2	20	2	2.35511	2.627135	2.89916	0.0445399	0.00890406	0.172163	0.0565003
chr3	129254667	129254743	3730385	0	+	0.565789	(0.53,0.59]	chr3	318889	1	CDS	CDS:UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504350.1:ENST00000509208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	20	2	2.35511	2.627135	2.89916	0.0445399	0.00890406	0.172163	0.0565003
chr9	131163869	131163955	10496010	0	+	0.44186	(0.42,0.455]	chr9	793290	1	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000489260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	79	2	2.32045	2.6270550000000004	2.93366	6.86279e-4	1.99387e-5	0.00876781	4.85705e-4
chr3	100732597	100732672	3637629	0	+	0.32	(0.29,0.33]	chr3	311851	2	CDS	CDS:UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	28	2	2.62211	2.626865	2.63162	0.00310562	0.00179843	0.0274272	0.0174371
chr7	157191178	157191277	8635966	0	+	0.464646	(0.455,0.49]	chr7	659694	20	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.25667	2.6268200000000004	2.99697	0.00445666	9.57891e-4	0.0346553	0.0107247
chr4	126690566	126690666	5633278	0	-	0.41	(0.39,0.42]	chr4	449064	2251	INTRON	INTRON	RP11-719N9.1	ENSG00000286251.2	ENST00000661809.1	lncRNA	lncRNA	lncRNA	lncRNA	5	26	2	2.02663	2.6266249999999998	3.22662	0.0130764	0.00257296	0.0729985	0.0229363
chr2	96277626	96277715	2790282	0	-	0.606742	(0.59,1]	chr2	248700	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.55837	2.62657	2.69477	0.020208	0.00709491	0.0978331	0.0479177
chr10	68339497	68339555	11089736	0	+	0.37931	(0.36,0.39]	chr10	842843	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000461310.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.66836	2.62656	3.58476	0.0474647	5.01956e-4	0.17993	0.00653592
chr3	152465580	152465680	3818534	0	+	0.34	(0.33,0.36]	chr3	325707	33	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	51	2	1.81272	2.626395	3.44007	0.00734254	1.36013e-5	0.0490627	3.54469e-4
chr14	104836376	104836471	14799099	0	-	0.621053	(0.59,1]	chr14	1159997	5	EXON_PSEUDO	EXON_PSEUDO	RPS2P4	ENSG00000196183.5	ENST00000476944.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	43	2	1.96416	2.626385	3.28861	0.044741	0.0028753	0.166115	0.0256141
chr5	56504721	56504809	6587864	0	-	0.465909	(0.455,0.49]	chr5	510045	2	EXON_PSEUDO	EXON_PSEUDO	RPL26P19	ENSG00000226221.1	ENST00000450941.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	47	2	1.79605	2.626155	3.45626	0.0427708	1.18079e-5	0.168094	3.14877e-4
chr16	84124629	84124728	16060673	0	-	0.464646	(0.455,0.49]	chr16	1290001	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000619773.1:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.04847	2.625975	3.20348	0.0192065	3.27782e-4	0.0943643	0.0046686
chr17	4272121	4272219	16417099	0	-	0.285714	[0,0.29]	chr17	1337241	30	UTR3	UTR3:EXON_MRNA	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.42645	2.62544	2.82443	0.0180803	0.0123114	0.0920398	0.070688
chr7	139307436	139307536	8565444	0	+	0.26	[0,0.29]	chr7	653581	97	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.42645	2.62544	2.82443	0.0180803	0.0123114	0.0920398	0.070688
chr7	121085128	121085227	8494699	0	+	0.626263	(0.59,1]	chr7	648338	81	INTRON	INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	105	2	2.27431	2.62542	2.97653	0.00142722	0.00116207	0.0153442	0.0126313
chr11	60064261	60064292	11961647	0	+	0.419355	(0.39,0.42]	chr11	915673	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000525686.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.38186	2.6254049999999998	2.86895	0.00601449	0.00177945	0.0434483	0.0172974
chr7	133034859	133034915	9078004	0	-	0.482143	(0.455,0.49]	chr7	693066	1	EXON_SMALL	EXON_SMALL:EXON_PSEUDO:PRIMIRNA:INTRON	CHCHD3:MIR3654:RP11-371A22.1	ENSG00000106554.13:ENSG00000284135.1:ENSG00000283041.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1:ENST00000634247.1	miRNA	miRNA	miRNA:protein_coding:processed_pseudogene	miRNA:protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene:primary_miRNA	8	45	2	2.00791	2.6253849999999996	3.24286	0.00484225	2.77105e-4	0.0366328	0.00444204
chr5	178210983	178211073	6411594	0	+	0.277778	[0,0.29]	chr5	498729	5	UTR3	UTR3:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	21	50	2	1.53823	2.625225	3.71222	0.00935106	1.5878e-5	0.0588361	4.03876e-4
chr10	101786450	101786550	11665787	0	-	0.36	(0.33,0.36]	chr10	889337	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000462994.1:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	2.48427	2.624885	2.7655	0.0175892	0.00150101	0.0918323	0.0152367
chr11	65429402	65429501	11984637	0	+	0.484848	(0.455,0.49]	chr11	920390	54	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	24	141	2	2.47514	2.624775	2.77441	1.06835e-4	1.63935e-6	0.00191084	6.67479e-5
chr16	56476604	56476704	15678999	0	+	0.46	(0.455,0.49]	chr16	1246383	5	UTR3	UTR3:EXON_MRNA	OGFOD1	ENSG00000087263.17	ENST00000336111.9:ENST00000566157.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	55	2	2.48533	2.62466	2.76399	8.75629e-4	3.84099e-4	0.0106963	0.00531017
chr19	49489849	49489862	17370736	0	+	0.615385	(0.59,1]	chr19	1443111	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	142	2	2.55872	2.624625	2.69053	4.39604e-4	3.32141e-4	0.00628612	0.00472432
chr22	45843863	45843959	18397385	0	+	0.375	(0.36,0.39]	chr22	1566825	3	UTR3	UTR3:EXON_MRNA	ATXN10	ENSG00000130638.17	ENST00000381061.8:ENST00000252934.10	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.6181	2.624625	2.63115	0.0245975	0.00176908	0.114841	0.0172426
chrX	134425824	134425923	18863536	0	+	0.373737	(0.36,0.39]	chrX	1607356	6	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.6181	2.624625	2.63115	0.0245975	0.00176908	0.114841	0.0172426
chr19	39488060	39488138	17326796	0	+	0.538462	(0.53,0.59]	chr19	1435089	1	CDS	CDS:UTR3:EXON_MRNA	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000602265.5:ENST00000595961.5:ENST00000597552.1:ENST00000601252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	2.0404	2.6245700000000003	3.20874	0.0362529	0.00278422	0.148525	0.0241009
chr20	50124761	50124859	18004578	0	-	0.632653	(0.59,1]	chr20	1526012	67	UTR3	UTR3:EXON_MRNA:INTRON	PEDS1-UBE2V1:PEDS1	ENSG00000124208.16:ENSG00000240849.11	ENST00000341698.2:ENST00000371652.9:ENST00000371650.9:ENST00000371656.3:ENST00000453505.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	58	2	1.9603	2.6244549999999998	3.28861	0.0141758	0.0028753	0.0776158	0.0256141
chr16	23689493	23689584	15595340	0	+	0.527473	(0.49,0.53]	chr16	1236747	1	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	43	2	1.5639	2.624445	3.68499	0.0185114	2.9991e-4	0.0948661	0.00472028
chr5	82276017	82276108	6672992	0	-	0.318681	(0.29,0.33]	chr5	515059	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS23	ENSG00000186468.13	ENST00000296674.13:ENST00000651545.1:ENST00000510210.5:ENST00000512493.5:ENST00000510019.5:ENST00000507980.1:ENST00000504293.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	64	2	2.11593	2.6244300000000003	3.13293	0.00799071	2.13058e-6	0.0527444	7.54259e-5
chr22	21447431	21447529	18302338	0	+	0.704082	(0.59,1]	chr22	1554129	8	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.66744	2.624385	3.58133	0.0369183	8.92036e-4	0.145208	0.010856
chr3	184307613	184307708	3949090	0	+	0.526316	(0.49,0.53]	chr3	332351	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5:ENST00000473991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	35	2	2.54558	2.624325	2.70307	0.00363585	0.0024326	0.0298137	0.0228485
chr6	27867529	27867588	7649637	0	-	0.423729	(0.42,0.455]	chr6	582824	1	UTR5	UTR5:EXON_MRNA	H1-5	ENSG00000184357.5	ENST00000331442.5	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.15137	2.62431	3.09725	0.0123864	3.95958e-5	0.07101	9.47364e-4
chr5	126777311	126777409	6202242	0	+	0.632653	(0.59,1]	chr5	483161	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	1.87297	2.624215	3.37546	0.0308113	2.25785e-4	0.130016	0.00375451
chr1	41070657	41070721	956986	0	-	0.578125	(0.53,0.59]	chr1	101275	2	CDS	CDS:EXON_MRNA	SCMH1	ENSG00000010803.16	ENST00000397171.6:ENST00000361191.9:ENST00000361705.7:ENST00000402904.6:ENST00000397174.6:ENST00000372597.5:ENST00000372596.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000456518.3	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.0289	2.624155	3.21941	0.0373899	0.00266171	0.146698	0.0240332
chr19	54458806	54458906	17391285	0	+	0.58	(0.53,0.59]	chr19	1447407	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.0289	2.624155	3.21941	0.0373899	0.00266171	0.146698	0.0240332
chr11	60901294	60901369	12402811	0	-	0.586667	(0.53,0.59]	chr11	959920	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PRPF19	ENSG00000110107.9	ENST00000227524.9:ENST00000540473.5:ENST00000541371.5	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.45844	2.62412	2.7898	0.0128364	0.00930921	0.0719798	0.0587563
chr19	39435847	39435895	17563252	0	-	0.645833	(0.59,1]	chr19	1475634	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	292	2	2.52836	2.624095	2.71983	1.85814e-4	1.7021e-5	0.00322865	4.2997e-4
chr16	58161801	58161899	15965643	0	-	0.469388	(0.455,0.49]	chr16	1280935	24	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	45	2	1.51376	2.62394	3.73412	0.0475178	1.26741e-5	0.17993	3.34022e-4
chr19	5896402	5896502	17437909	0	-	0.68	(0.59,1]	chr19	1456265	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AC024592.12:NDUFA11	ENSG00000267740.5:ENSG00000174886.14	ENST00000592091.5:ENST00000586349.5:ENST00000585661.1:ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000591341.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	42	2	2.25872	2.62392	2.9891200000000002	0.0193473	0.00823979	0.0969537	0.0540283
chr22	19176129	19176229	18431154	0	-	0.54	(0.53,0.59]	chr22	1570487	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	69	2	1.94437	2.623905	3.30344	0.0143432	9.28103e-6	0.0783202	2.58687e-4
chr5	132880958	132881058	6837698	0	-	0.43	(0.42,0.455]	chr5	523235	57	UTR3	UTR3:EXON_MRNA	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.72071	2.62365	3.52659	0.0499984	6.87022e-4	0.179758	0.00876781
chr17	50133935	50134034	16584272	0	-	0.555556	(0.53,0.59]	chr17	1362799	3	UTR3	UTR3:EXON_MRNA	PPP1R9B	ENSG00000108819.11	ENST00000612501.2	protein_coding	protein_coding	protein_coding	protein_coding	6	46	2	2.01641	2.6236300000000004	3.2308500000000002	0.0108917	2.81517e-4	0.0645168	0.00415519
chr6	85677757	85677856	7826457	0	-	0.383838	(0.36,0.39]	chr6	599652	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000624295.3:ENST00000658871.1:ENST00000453754.5:ENST00000625175.3:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000623267.3:ENST00000425170.2:ENST00000433843.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	20	100	2	2.40428	2.623555	2.84283	1.14764e-4	7.09942e-6	0.00219095	2.0881e-4
chr6	35468798	35468873	7130844	0	+	0.653333	(0.59,1]	chr6	549009	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL10A	ENSG00000198755.11	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000490335.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	213	2	2.50716	2.623535	2.73991	1.41809e-4	1.08105e-4	0.0023917	0.00208056
chr11	499045	499145	12226420	0	-	0.62	(0.59,1]	chr11	943355	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5:ENST00000529115.5:ENST00000527485.5:ENST00000529368.5:ENST00000529306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	32	2	2.39747	2.623455	2.84944	0.0430221	0.0128238	0.161091	0.0719798
chr1	6186476	6186573	842299	0	-	0.319588	(0.29,0.33]	chr1	84886	16	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	57	2	2.11593	2.62345	3.13097	0.00799071	4.62589e-6	0.0527444	1.45186e-4
chr6	31828913	31829008	7116696	0	+	0.652632	(0.59,1]	chr6	546209	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	158	2	2.35365	2.623385	2.89312	0.00113124	7.07679e-5	0.0123076	0.00149595
chr4	57030203	57030301	4851288	0	+	0.469388	(0.455,0.49]	chr4	399863	1	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	1.43393	2.62334	3.81275	0.0573788	0.0138827	0.196772	0.0760883
chr21	44851069	44851168	18277422	0	-	0.535354	(0.53,0.59]	chr21	1550248	16	UTR3	UTR3:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.0271	2.623255	3.21941	0.00643061	0.00266171	0.0450905	0.0240332
chr12	108648686	108648768	13530511	0	-	0.47561	(0.455,0.49]	chr12	1063937	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000549387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.52734	2.623235	2.71913	0.00792433	0.00103266	0.0523592	0.011478
chr16	2243134	2243224	15825095	0	-	0.711111	(0.59,1]	chr16	1262312	2	CDS	CDS:EXON_MRNA	ECI1	ENSG00000167969.13	ENST00000301729.9:ENST00000562238.5:ENST00000570258.5:ENST00000566379.1:ENST00000563447.1:ENST00000563029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.47837	2.623195	2.76802	0.0158525	0.00970721	0.0854671	0.0608296
chr5	168556971	168557071	6968987	0	-	0.28	[0,0.29]	chr5	532791	86	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.16409	2.6230599999999997	3.08203	0.0125675	7.1311e-4	0.0716375	0.0085671400000000009
chr17	49050626	49050725	16256652	0	+	0.363636	(0.36,0.39]	chr17	1317683	13	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.05966	2.62304	3.18642	0.0366015	0.00359152	0.145024	0.0302391
chr2	112663025	112663125	2001921	0	+	0.39	(0.36,0.39]	chr2	190058	1	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.05966	2.62304	3.18642	0.0366015	0.00359152	0.145024	0.0302391
chr6	149378590	149378678	7480749	0	+	0.488636	(0.455,0.49]	chr6	571630	5	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	69	2	2.19394	2.62303	3.05212	0.00207604	1.87787e-5	0.0203524	4.60859e-4
chr2	159748103	159748203	2163032	0	+	0.44	(0.42,0.455]	chr2	199192	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000473749.1:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.05515	2.6229649999999998	3.19078	0.017518	0.00310864	0.0924156	0.0274272
chr1	201135266	201135365	1446494	0	-	0.525253	(0.49,0.53]	chr1	145188	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	1.99044	2.62279	3.25514	0.0435903	0.00227467	0.170594	0.0209546
chr10	74118169	74118268	11117649	0	+	0.515152	(0.49,0.53]	chr10	846311	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	1.99044	2.62279	3.25514	0.0435903	0.00227467	0.170594	0.0209546
chr8	108229069	108229132	10002581	0	-	0.396825	(0.39,0.42]	chr8	754199	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000677746.1:ENST00000523646.1:ENST00000676931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	79	2	2.48357	2.622785	2.762	0.00171404	1.34543e-5	0.017714	3.52082e-4
chr3	13341747	13341815	4046460	0	-	0.455882	(0.455,0.49]	chr3	339609	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.51376	2.6225899999999998	3.73142	0.0475178	2.35261e-4	0.17993	0.00356397
chr2	47799287	47799387	1788194	0	+	0.49	(0.455,0.49]	chr2	172666	4	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.27492	2.6220850000000002	2.96925	0.0193827	0.00698725	0.0943643	0.0473262
chr8	100718160	100718260	9976102	0	-	0.4	(0.39,0.42]	chr8	752701	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2:ENST00000518196.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	84	433	2	2.42306	2.62208	2.8211	1.59729e-6	8.02615e-8	5.92899e-5	5.1409e-6
chr10	87753495	87753594	11607862	0	-	0.272727	[0,0.29]	chr10	884001	21	UTR3	UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.87547	2.62195	3.36843	0.0144841	3.09234e-4	0.0789039	0.00477565
chr6	34417505	34417605	7673782	0	-	0.52	(0.49,0.53]	chr6	588056	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS10-NUDT3:RPS10	ENSG00000270800.3:ENSG00000124614.16	ENST00000639725.1:ENST00000639877.1:ENST00000605528.2:ENST00000648437.1:ENST00000644700.1:ENST00000344700.8:ENST00000621356.3:ENST00000467531.5:ENST00000464218.5:ENST00000644393.1	protein_coding	protein_coding	protein_coding	protein_coding	11	70	2	2.09452	2.6219400000000004	3.14936	0.00219772	2.58622e-5	0.0209983	5.98691e-4
chr12	55994596	55994695	12897169	0	+	0.373737	(0.36,0.39]	chr12	1003857	25	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.38564	2.62174	2.85784	0.0476159	0.00191736	0.17993	0.0183299
chr3	20170608	20170703	4076352	0	-	0.389474	(0.36,0.39]	chr3	341645	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5:ENST00000442720.5:ENST00000412997.6:ENST00000460637.1:ENST00000437051.5:ENST00000417364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.38564	2.62174	2.85784	0.0476159	0.00191736	0.17993	0.0183299
chr16	2766487	2766585	15494940	0	+	0.602041	(0.59,1]	chr16	1227802	51	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	15	184	2	2.45548	2.621725	2.78797	2.1998e-4	1.91324e-4	0.00366674	0.00304751
chr22	36487480	36487577	18499382	0	-	0.391753	(0.39,0.42]	chr22	1578355	4	UTR3	UTR3:EXON_MRNA	FOXRED2	ENSG00000100350.15	ENST00000397224.9	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.01677	2.621695	3.22662	0.0235818	0.00257296	0.111323	0.0229363
chr3	179400620	179400719	4605536	0	-	0.414141	(0.39,0.42]	chr3	380149	47	UTR3	UTR3:EXON_MRNA	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.01677	2.621695	3.22662	0.0235818	0.00257296	0.111323	0.0229363
chr9	130885393	130885488	10494285	0	+	0.631579	(0.59,1]	chr9	792934	16	CDS	CDS:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	57	2	2.30623	2.6216049999999997	2.93698	0.0170607	0.0015925	0.0896731	0.0159023
chr21	33550728	33550827	18101164	0	+	0.565657	(0.53,0.59]	chr21	1534527	1	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	SON:MIR6501	ENSG00000159140.21:ENSG00000284448.1	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000290239.7	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	5	35	2	1.94437	2.62156	3.29875	0.0143432	0.00191422	0.0783202	0.018324
chr10	78035417	78035510	11140867	0	+	0.322581	(0.29,0.33]	chr10	847075	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000466129.6:ENST00000465692.2:ENST00000475468.6:ENST00000482069.5:ENST00000646254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	62	2	1.78211	2.62155	3.46099	0.0042902	1.51857e-6	0.0333617	6.25616e-5
chr2	65268563	65268634	1854374	0	+	0.492958	(0.49,0.53]	chr2	175982	1	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	9	65	2	2.18417	2.6215450000000002	3.05892	0.00578816	1.79873e-5	0.0427749	4.46935e-4
chr16	24214816	24214914	15599235	0	+	0.397959	(0.39,0.42]	chr16	1236920	1	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	13	73	2	2.57957	2.62153	2.66349	2.98559e-4	7.84836e-5	0.00471823	0.00149145
chr10	96552993	96553059	11640418	0	-	0.363636	(0.36,0.39]	chr10	886611	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.1437	2.6214500000000003	3.0992	0.0340515	5.86576e-4	0.141465	0.00742331
chr12	6570868	6570950	13187065	0	-	0.573171	(0.53,0.59]	chr12	1032252	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000646322.1:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000642686.1:ENST00000645143.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000535717.2:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000642893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	31	2	2.22207	2.621305	3.02054	0.00910511	0.00577011	0.0576716	0.0426551
chr3	195783256	195783355	4661099	0	-	0.565657	(0.53,0.59]	chr3	385270	46	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	2.36991	2.621275	2.87264	0.00501452	0.00168899	0.0370872	0.0175515
chr1	149886069	149886164	1287104	0	-	0.326316	(0.29,0.33]	chr1	127851	18	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	12	65	2	2.34203	2.6211599999999997	2.90029	0.010113	4.54177e-6	0.0626311	1.42842e-4
chr17	61590476	61590532	16625629	0	-	0.410714	(0.39,0.42]	chr17	1366487	2	UTR3	UTR3:EXON_MRNA	NACA2	ENSG00000253506.3	ENST00000521764.3	protein_coding	protein_coding	protein_coding	protein_coding	9	54	2	2.11822	2.6211599999999997	3.1241	0.005418	3.0762e-5	0.0409315	6.89383e-4
chr2	65104733	65104806	2708237	0	-	0.39726	(0.39,0.42]	chr2	241370	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	64	2	2.32718	2.62113	2.91508	4.41174e-4	2.83485e-4	0.0062930699999999996	0.00417646
chr12	53516039	53516139	13339509	0	-	0.44	(0.42,0.455]	chr12	1049176	41	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000551087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	1.93033	2.62097	3.31161	0.0505055	0.00186138	0.181202	0.018635
chr12	56664775	56664800	13352214	0	-	0.36	(0.33,0.36]	chr12	1051784	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	41	2	2.51887	2.62074	2.72261	0.0358636	9.0019e-5	0.147298	0.0016684
chr8	116726015	116726093	10034724	0	-	0.435897	(0.42,0.455]	chr8	755367	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000518949.5:ENST00000518995.5:ENST00000522800.5:ENST00000518034.5:ENST00000517974.1:ENST00000522453.1:ENST00000519046.5:ENST00000520813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	60	2	2.42938	2.62074	2.8121	0.0045028	4.69141e-5	0.0349711	9.7437e-4
chr2	189924118	189924216	2274553	0	+	0.520408	(0.49,0.53]	chr2	206588	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	C2orf88:HNRNPCP2	ENSG00000187699.10:ENSG00000204253.4	ENST00000478197.1:ENST00000495546.1:ENST00000399515.2	protein_coding	processed_transcript	protein_coding:processed_pseudogene	processed_transcript:processed_pseudogene	7	37	2	1.63631	2.6205350000000003	3.60476	0.0223637	4.52633e-4	0.104967	0.00642319
chr12	123289108	123289207	13595009	0	-	0.242424	[0,0.29]	chr12	1070977	1	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.4397	2.62052	2.80134	0.0388194	0.0049344	0.149227	0.0379087
chr15	77485310	77485407	15037373	0	+	0.268041	[0,0.29]	chr15	1182624	25	UTR3	UTR3:EXON_MRNA	HMG20A	ENSG00000140382.15	ENST00000381714.7:ENST00000336216.9:ENST00000558288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.4397	2.62052	2.80134	0.0388194	0.0049344	0.149227	0.0379087
chr12	108652344	108652417	13530552	0	-	0.479452	(0.455,0.49]	chr12	1063946	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5:ENST00000552030.5:ENST00000547361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	54	2	1.94735	2.620425	3.2935	0.00680997	3.58585e-5	0.0465162	7.84153e-4
chrX	49323802	49323863	18694519	0	+	0.590164	(0.59,1]	chrX	1594827	2	CDS	CDS:EXON_MRNA	GAGE12J	ENSG00000224659.2	ENST00000442437.2	protein_coding	protein_coding	protein_coding	protein_coding	8	107	2	2.3791	2.6202050000000003	2.86131	0.00271535	2.95355e-4	0.0237499	0.00467597
chr1	148751539	148751637	458214	0	+	0.428571	(0.42,0.455]	chr1	45663	22	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.32656	2.620145	2.91373	0.00892357	0.00298867	0.0567495	0.0255712
chr14	67648046	67648114	14361547	0	+	0.441176	(0.42,0.455]	chr14	1122676	1	CDS	CDS:EXON_MRNA	ARG2	ENSG00000081181.8	ENST00000261783.4:ENST00000557319.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	2.32656	2.620145	2.91373	0.00892357	0.00298867	0.0567495	0.0255712
chr5	34831834	34831931	5929881	0	+	0.42268	(0.42,0.455]	chr5	464654	12	UTR3	UTR3:EXON_MRNA	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000428746.6	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.32656	2.620145	2.91373	0.00892357	0.00298867	0.0567495	0.0255712
chr1	32334856	32334936	922179	0	-	0.45	(0.42,0.455]	chr1	97101	3	CDS	CDS:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.32646	2.620095	2.91373	0.00892357	0.00624136	0.0567495	0.0443844
chr1	156334876	156334918	1314295	0	-	0.452381	(0.42,0.455]	chr1	133465	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.32629	2.62001	2.91373	0.0153564	0.00892357	0.0832114	0.0567495
chr14	52641593	52641692	14630046	0	-	0.393939	(0.39,0.42]	chr14	1145962	18	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.3855	2.61983	2.85416	0.0049615	0.00225069	0.0368419	0.021386
chr12	50925038	50925138	12875780	0	+	0.45	(0.42,0.455]	chr12	1000521	1	CDS_START	CDS_START:CDS:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000550502.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.3259	2.619815	2.91373	0.0484606	0.00892357	0.175495	0.0567495
chr16	74626412	74626483	16032634	0	-	0.422535	(0.42,0.455]	chr16	1287415	2	CDS	CDS:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.3259	2.619815	2.91373	0.0484606	0.00892357	0.175495	0.0567495
chr3	101682838	101682907	4331673	0	-	0.449275	(0.42,0.455]	chr3	361340	2	CDS	CDS:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	150	2	1.42091	2.61956	3.81821	0.0156981	2.20232e-9	0.0845755	2.09759e-7
chr6	34280276	34280376	7672404	0	-	0.4	(0.39,0.42]	chr6	588026	7	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	2.36783	2.61952	2.87121	9.23937e-4	4.65001e-4	0.0111585	0.00615886
chr11	1763859	1763954	12230540	0	-	0.726316	(0.59,1]	chr11	944425	1	UTR5	UTR5:EXON_MRNA:INTRON	RP11-295K3.1:CTSD	ENSG00000250644.3:ENSG00000117984.15	ENST00000636615.1:ENST00000636397.1:ENST00000637815.2:ENST00000429746.2:ENST00000236671.7:ENST00000678991.1:ENST00000637381.2:ENST00000433655.6:ENST00000637915.1:ENST00000636571.1:ENST00000637387.1:ENST00000636843.1:ENST00000438213.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	42	2	2.11074	2.61922	3.1277	0.0305	0.00490589	0.130204	0.0366648
chr17	48576721	48576821	16578098	0	-	0.71	(0.59,1]	chr17	1361840	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HOXB3:HOXB4	ENSG00000120093.12:ENSG00000182742.6	ENST00000498678.6:ENST00000472863.5:ENST00000460160.5:ENST00000489475.5:ENST00000476342.1:ENST00000465120.3:ENST00000552000.2:ENST00000332503.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	42	2	2.11074	2.61922	3.1277	0.0305	0.00490589	0.130204	0.0366648
chr6	30743935	30744035	7659370	0	-	0.6	(0.59,1]	chr6	584323	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IER3	ENSG00000137331.12	ENST00000376377.2:ENST00000259874.6	protein_coding	protein_coding	protein_coding	protein_coding	3	42	2	2.11074	2.61922	3.1277	0.0305	0.00490589	0.130204	0.0366648
chr17	68046503	68046596	16333852	0	+	0.451613	(0.42,0.455]	chr17	1325140	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000678388.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2:ENST00000582898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	47	2	1.97508	2.61919	3.2633	0.0147202	4.36674e-5	0.0802571	9.18809e-4
chr15	41279588	41279688	14885227	0	+	0.38	(0.36,0.39]	chr15	1169243	3	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000560411.5:ENST00000392151.6:ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	103	2	2.39538	2.61907	2.84276	5.08577e-5	3.71354e-5	0.00114482	8.06818e-4
chr12	100218414	100218500	13038819	0	+	0.44186	(0.42,0.455]	chr12	1015301	1	CDS	CDS:UTR3:EXON_MRNA	ACTR6	ENSG00000075089.10	ENST00000553038.5:ENST00000188312.7:ENST00000546902.5:ENST00000548180.5:ENST00000552376.5:ENST00000552064.5:ENST00000551617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.57051	2.61874	2.66697	0.0265466	0.0190326	0.120071	0.0958835
chr2	36846764	36846864	2594581	0	-	0.43	(0.42,0.455]	chr2	233508	92	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.57051	2.61874	2.66697	0.0265466	0.0190326	0.120071	0.0958835
chr21	32320585	32320640	18213273	0	-	0.454545	(0.42,0.455]	chr21	1545470	2	CDS	CDS:EXON_MRNA	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.57051	2.61874	2.66697	0.0265466	0.0190326	0.120071	0.0958835
chr5	133104284	133104336	6227187	0	+	0.442308	(0.42,0.455]	chr5	484831	2	CDS	CDS:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000514825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.57051	2.61874	2.66697	0.0265466	0.0190326	0.120071	0.0958835
chr7	50590958	50591058	8815568	0	-	0.44	(0.42,0.455]	chr7	672831	10	UTR3	UTR3:EXON_MRNA	GRB10	ENSG00000106070.20	ENST00000335866.7:ENST00000398812.6:ENST00000398810.6:ENST00000401949.6:ENST00000402578.5:ENST00000644769.1:ENST00000403097.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.57051	2.61874	2.66697	0.0265466	0.0190326	0.120071	0.0958835
chrX	141906406	141906506	18883530	0	+	0.43	(0.42,0.455]	chrX	1608997	11	CDS	CDS:EXON_MRNA:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.57051	2.61874	2.66697	0.0265466	0.0190326	0.120071	0.0958835
chr19	19506659	19506758	17263986	0	+	0.434343	(0.42,0.455]	chr19	1426397	13	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	48	2	2.25867	2.61862	2.97857	0.0025407	2.50668e-4	0.0233955	0.00378275
chr3	38252990	38253090	3420116	0	+	0.47	(0.455,0.49]	chr3	297237	2	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.22282	2.61846	3.0141	0.00483628	9.3076e-4	0.0366328	0.0111917
chr5	154816045	154816142	6315031	0	+	0.525773	(0.49,0.53]	chr5	492515	21	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.3642	2.6184399999999997	2.87268	0.00248477	0.00175078	0.0223997	0.0180053
chr11	33706962	33707061	12344182	0	-	0.424242	(0.42,0.455]	chr11	953994	41	UTR3	UTR3:EXON_MRNA:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.19674	2.618385	3.04003	0.0254904	7.68268e-4	0.117089	0.00916171
chr16	87402997	87403097	15801156	0	+	0.45	(0.42,0.455]	chr16	1257524	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.19674	2.618385	3.04003	0.0254904	7.68268e-4	0.117089	0.00916171
chr9	109050282	109050355	10788079	0	-	0.452055	(0.42,0.455]	chr9	816830	1	CDS	CDS:UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.19674	2.618385	3.04003	0.0254904	7.68268e-4	0.117089	0.00916171
chr2	32515184	32515281	1714032	0	+	0.402062	(0.39,0.42]	chr2	168274	3	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.49426	2.618345	2.74243	0.0085468	0.00369167	0.0551026	0.030936
chr11	57818172	57818270	11953258	0	+	0.469388	(0.455,0.49]	chr11	914890	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	45	2	2.17632	2.618285	3.06025	0.00634339	1.55878e-4	0.0446708	0.00259387
chr9	34086778	34086876	10634748	0	-	0.346939	(0.33,0.36]	chr9	803967	5	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	2.44986	2.61816	2.78646	0.00563343	2.81934e-4	0.0422191	0.00415762
chr10	96521470	96521569	11640093	0	-	0.30303	(0.29,0.33]	chr10	886559	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	1.83055	2.61802	3.40549	0.0348758	1.12275e-4	0.144642	0.00199494
chr1	109426330	109426389	1220629	0	-	0.661017	(0.59,1]	chr1	119118	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.24689	2.618005	2.9891200000000002	0.00890458	0.00823979	0.0565003	0.0540283
chr14	21263280	21263377	14521057	0	-	0.226804	[0,0.29]	chr14	1137292	8	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1:ENST00000555127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	44	2	2.28853	2.6177900000000003	2.94705	0.00443139	4.42068e-5	0.0344729	9.28926e-4
chr10	60785725	60785787	11063600	0	+	0.387097	(0.36,0.39]	chr10	841939	2	CDS	CDS:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	43	2	2.46777	2.617775	2.76778	0.00365703	4.3886e-4	0.0307238	0.00591388
chr19	57293778	57293875	17405798	0	+	0.42268	(0.42,0.455]	chr19	1450092	17	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	1.71996	2.61767	3.51538	0.0542346	5.28826e-5	0.199653	0.00107799
chr19	15835185	15835280	17246588	0	+	0.4	(0.39,0.42]	chr19	1422765	5	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	41	223	2	2.51646	2.617555	2.71865	8.1708e-6	7.12796e-7	2.55068e-4	2.99472e-5
chr20	47224316	47224396	17993256	0	-	0.5875	(0.53,0.59]	chr20	1524952	1	CDS	CDS:EXON_MRNA:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.36244	2.61754	2.87264	0.0131162	0.00168899	0.073569	0.0175515
chr19	805099	805187	17189514	0	+	0.659091	(0.59,1]	chr19	1411030	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1:ENST00000585956.5:ENST00000587136.1:ENST00000585932.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	8	102	2	2.18066	2.61753	3.0544	0.00401624	2.52807e-4	0.0324137	0.00381058
chrX	101412471	101412567	18786563	0	+	0.458333	(0.455,0.49]	chrX	1601436	5	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	1.96875	2.61749	3.26623	0.0480352	2.31662e-4	0.180552	0.00354314
chr1	183553597	183553697	598033	0	+	0.44	(0.42,0.455]	chr1	62141	5	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.48259	2.617445	2.7523	0.0153283	0.0031851	0.0828908	0.0267166
chr10	27539459	27539557	10988557	0	+	0.27551	[0,0.29]	chr10	835725	15	UTR3	UTR3:EXON_MRNA:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682181.1:ENST00000682668.1:ENST00000684134.1:ENST00000682777.1:ENST00000684191.1:ENST00000682347.1:ENST00000683030.1:ENST00000683915.1:ENST00000684457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.40395	2.617175	2.8304	0.0210081	0.0121878	0.101116	0.0701019
chr10	113910128	113910227	11262965	0	+	0.252525	[0,0.29]	chr10	858164	17	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.40395	2.617175	2.8304	0.0210081	0.0121878	0.101116	0.0701019
chr2	69880094	69880194	1877948	0	+	0.27	[0,0.29]	chr2	177317	12	UTR3	UTR3:EXON_MRNA	GMCL1	ENSG00000087338.5	ENST00000282570.4	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.40395	2.617175	2.8304	0.0210081	0.0121878	0.101116	0.0701019
chr13	46130875	46130938	14009650	0	-	0.52381	(0.49,0.53]	chr13	1098496	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	2.30147	2.617145	2.93282	0.0033367	3.30011e-4	0.0278556	0.00504024
chr7	105567170	105567264	8974516	0	-	0.446809	(0.42,0.455]	chr7	686877	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EFCAB10	ENSG00000185055.11	ENST00000469099.5:ENST00000480514.6:ENST00000485614.5:ENST00000486180.5:ENST00000490493.1:ENST00000460135.1	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.34191	2.6169149999999997	2.89192	0.0159091	0.00157686	0.0854674	0.015761
chr8	11838387	11838448	9202065	0	+	0.42623	(0.42,0.455]	chr8	703063	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	143	2	2.48292	2.616645	2.75037	2.41003e-5	1.35996e-5	6.23934e-4	3.54469e-4
chr5	10307716	10307809	6447181	0	-	0.731183	(0.59,1]	chr5	502204	2	UTR5	UTR5:EXON_MRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	122	2	1.72077	2.616105	3.51144	0.0137395	1.99699e-5	0.0760883	4.86327e-4
chr22	41907210	41907307	18383964	0	+	0.43299	(0.42,0.455]	chr22	1565112	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	31	2	2.36247	2.61605	2.86963	0.0462889	4.62477e-4	0.176878	0.00613242
chr8	42399650	42399703	9305599	0	+	0.433962	(0.42,0.455]	chr8	712493	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	VDAC3	ENSG00000078668.14	ENST00000518563.5:ENST00000520115.5:ENST00000522069.5:ENST00000522572.5:ENST00000022615.9:ENST00000521348.5:ENST00000518495.5:ENST00000521158.5:ENST00000522010.1:ENST00000522178.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.36247	2.61605	2.86963	0.0462889	4.62477e-4	0.176878	0.00613242
chr4	48423157	48423255	4826831	0	+	0.306122	(0.29,0.33]	chr4	397749	12	UTR3	UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.59395	2.61604	2.63813	0.0249836	0.00803229	0.114013	0.0528968
chr7	121140919	121141013	8495266	0	+	0.510638	(0.49,0.53]	chr7	648396	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	9	59	2	2.54541	2.61597	2.68653	0.00122977	2.65074e-4	0.013593	0.00395787
chr11	87256768	87256868	12054218	0	+	0.48	(0.455,0.49]	chr11	929276	197	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.10347	2.6159499999999998	3.12843	0.0313707	0.00392855	0.13127	0.0322851
chr15	65154881	65154981	15343674	0	-	0.46	(0.455,0.49]	chr15	1211477	2	CDS	CDS:UTR3:EXON_MRNA	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000560166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.10347	2.6159499999999998	3.12843	0.0313707	0.00392855	0.13127	0.0322851
chr12	48688655	48688755	13321333	0	-	0.48	(0.455,0.49]	chr12	1044934	3	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.92777	2.615805	3.30384	0.0286531	0.00184955	0.128685	0.0178046
chrX	81278330	81278411	18749953	0	+	0.45679	(0.455,0.49]	chrX	1600053	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.92777	2.615805	3.30384	0.0286531	0.00184955	0.128685	0.0178046
chr19	55386652	55386752	17396159	0	+	0.6	(0.59,1]	chr19	1448671	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL28	ENSG00000108107.15	ENST00000344063.7:ENST00000558815.5:ENST00000428193.6:ENST00000431533.6:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000558752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	195	2	2.32809	2.61578	2.90347	9.67627e-4	2.35151e-5	0.011536	5.56431e-4
chr11	10799282	10799353	12272555	0	-	0.338028	(0.33,0.36]	chr11	948977	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000525606.5:ENST00000534470.1:ENST00000528839.1:ENST00000534272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	50	2	2.29014	2.615775	2.94141	0.00117614	1.08179e-4	0.0132131	0.00193141
chr16	81660883	81660946	15771570	0	+	0.47619	(0.455,0.49]	chr16	1255505	1	CDS	CDS:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000398040.8:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.23479	2.615745	2.9967	0.0209335	0.00650423	0.101282	0.0454205
chr1	149884647	149884742	1287089	0	-	0.4	(0.39,0.42]	chr1	127851	3	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	1.60776	2.615665	3.62357	0.0291807	7.02045e-8	0.129773	4.12272e-6
chr6	34245942	34246038	7124354	0	+	0.645833	(0.59,1]	chr6	548262	12	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	70	878	2	2.4323	2.615455	2.79861	3.54405e-5	1.50252e-6	8.64179e-4	5.64327e-5
chr1	183626342	183626441	1404921	0	-	0.393939	(0.39,0.42]	chr1	142115	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	1.99911	2.615425	3.23174	0.0477207	2.82122e-4	0.17993	0.00415762
chr1	207326751	207326837	686318	0	+	0.465116	(0.455,0.49]	chr1	69490	1	CDS	CDS:EXON_MRNA	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	84	2	1.85979	2.615315	3.37084	0.00423971	1.67935e-6	0.0331932	6.17774e-5
chr3	10149965	10150062	3302443	0	+	0.371134	(0.36,0.39]	chr3	290668	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VHL	ENSG00000134086.8	ENST00000256474.3:ENST00000345392.2:ENST00000477538.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	2.16717	2.6150450000000003	3.06292	0.0152504	0.00499846	0.0828908	0.0370021
chr1	171575060	171575128	537449	0	+	0.485294	(0.455,0.49]	chr1	57696	3	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.15064	2.61503	3.07942	0.00661084	1.46687e-4	0.046082	0.0026854
chr8	47857155	47857227	9816346	0	-	0.472222	(0.455,0.49]	chr8	742665	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.47392	2.6148949999999997	2.75587	0.00293507	0.00157443	0.025146	0.016717
chrX	25645980	25646067	19007762	0	-	0.563218	(0.53,0.59]	chrX	1617369	4	EXON_PSEUDO	EXON_PSEUDO	RANBP1P1	ENSG00000228519.3	ENST00000496795.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	32	2	2.45052	2.614865	2.77921	0.0132865	0.00355092	0.0740932	0.0300049
chr6	143165012	143165081	7445936	0	+	0.304348	(0.29,0.33]	chr6	569861	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	2.45373	2.61479	2.77585	0.0156405	0.0143131	0.084273700000000007	0.0780602
chr11	66625280	66625380	11991340	0	+	0.62	(0.59,1]	chr11	922178	11	CDS	CDS:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2:ENST00000409738.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	56	2	2.50322	2.6147349999999996	2.72625	0.00863444	0.00394493	0.0556009	0.0322851
chr1	244705555	244705622	804406	0	+	0.462687	(0.455,0.49]	chr1	80054	1	CDS	CDS:EXON_MRNA	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.15985	2.614495	3.06914	0.0128965	6.6649e-4	0.0722356	0.00820018
chr19	12793015	12793115	17237300	0	+	0.44	(0.42,0.455]	chr19	1420767	3	UTR3	UTR3:EXON_MRNA	JUNB	ENSG00000171223.6	ENST00000302754.6	protein_coding	protein_coding	protein_coding	protein_coding	10	57	2	2.53982	2.6144350000000003	2.68905	0.00119301	1.75726e-4	0.0128249	0.00307149
chr11	17075623	17075700	12295031	0	-	0.38961	(0.36,0.39]	chr11	950296	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000531908.5:ENST00000525828.1:ENST00000533969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	18	2	2.20444	2.614205	3.02397	0.0237257	0.00674398	0.109365	0.0461258
chr16	22346402	22346496	15891349	0	-	0.37234	(0.36,0.39]	chr16	1271755	6	UTR3	UTR3:EXON_MRNA	CDR2	ENSG00000140743.8	ENST00000268383.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.20444	2.614205	3.02397	0.0237257	0.00674398	0.109365	0.0461258
chr11	18506856	18506923	12302800	0	-	0.567164	(0.53,0.59]	chr11	951496	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TSG101	ENSG00000074319.13	ENST00000536719.5:ENST00000251968.4:ENST00000545247.6:ENST00000543054.5:ENST00000543087.5:ENST00000544804.5:ENST00000438874.6:ENST00000542488.5:ENST00000535077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	32	2	2.43852	2.61416	2.7898	0.0128364	0.00373745	0.0719798	0.0303359
chr1	226986452	226986544	740602	0	+	0.565217	(0.53,0.59]	chr1	74763	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-1087E8.6:COQ8A	ENSG00000288674.1:ENSG00000163050.18	ENST00000366779.6:ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5:ENST00000479852.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	2.515	2.61409	2.71318	0.0292633	0.00340745	0.129773	0.0283456
chr11	62881880	62881900	11974414	0	+	0.55	(0.53,0.59]	chr11	918039	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000539458.1:ENST00000541649.2:ENST00000538682.6:ENST00000536981.6:ENST00000539891.6:ENST00000679594.1:ENST00000535768.2:ENST00000537508.6:ENST00000537839.5:ENST00000546253.5:ENST00000457660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.515	2.61409	2.71318	0.0292633	0.00340745	0.129773	0.0283456
chr1	1785382	1785480	829664	0	-	0.397959	(0.39,0.42]	chr1	82929	2	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	12	63	2	1.49547	2.61401	3.73255	0.0235423	1.51578e-6	0.111247	5.67784e-5
chr1	51356406	51356504	1014255	0	-	0.428571	(0.42,0.455]	chr1	104961	23	UTR3	UTR3:EXON_MRNA	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.0371	2.6139400000000004	3.19078	0.00638814	0.00310864	0.0450608	0.0274272
chr1	151399559	151399572	471564	0	+	0.153846	[0,0.29]	chr1	48181	1	EXON_MRNA	EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5	protein_coding	retained_intron	protein_coding	retained_intron	6	30	2	2.40395	2.6139099999999997	2.82387	0.0210081	2.4558e-4	0.101116	0.00371192
chr5	32355289	32355383	6518894	0	-	0.287234	[0,0.29]	chr5	504941	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000502988.5:ENST00000510369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	18	2	2.42645	2.6138950000000003	2.80134	0.0123114	0.0049344	0.070688	0.0379087
chr19	3983109	3983200	17430253	0	-	0.648352	(0.59,1]	chr19	1454731	1	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	37	451	2	2.54114	2.61373	2.68632	2.60802e-5	2.04928e-5	6.70208e-4	4.97369e-4
chr4	26433069	26433167	4766701	0	+	0.377551	(0.36,0.39]	chr4	394281	22	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	1.78505	2.61356	3.44207	0.0228572	1.3128e-5	0.108215	3.44837e-4
chr8	56010902	56011001	9343338	0	+	0.333333	(0.33,0.36]	chr8	714639	9	UTR3	UTR3:EXON_MRNA	LYN	ENSG00000254087.8	ENST00000519728.6:ENST00000520220.6	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.65713	2.6133100000000002	3.56949	0.0528205	5.48184e-4	0.195536	0.00697082
chr1	162529331	162529431	507556	0	+	0.3	(0.29,0.33]	chr1	54762	69	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.58845	2.61329	2.63813	0.00803229	4.30021e-4	0.0528968	0.00581002
chr2	187464905	187465002	3070148	0	-	0.412371	(0.39,0.42]	chr2	271827	8	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	2.38766	2.6132299999999997	2.8388	0.00119001	6.72604e-4	0.0128045	0.00873144
chr15	74983324	74983376	15376477	0	-	0.403846	(0.39,0.42]	chr15	1215581	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199580.1	ENST00000362710.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	3	20	2	1.99911	2.612865	3.22662	0.0477207	0.00257296	0.17993	0.0229363
chr2	181063256	181063348	2242315	0	+	0.326087	(0.29,0.33]	chr2	204439	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	UBE2E3	ENSG00000170035.16	ENST00000392415.6:ENST00000410062.9:ENST00000602710.5:ENST00000602762.5:ENST00000602837.1:ENST00000602970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	41	2	1.51736	2.6126199999999997	3.70788	0.02428	1.58728e-5	0.114157	4.0383e-4
chr19	3977906	3977995	17430190	0	-	0.696629	(0.59,1]	chr19	1454695	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	21	258	2	2.50742	2.612615	2.71781	8.50589e-5	7.72727e-5	0.00174644	0.00146988
chr16	1701008	1701106	15488691	0	+	0.561224	(0.53,0.59]	chr16	1226190	9	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.01641	2.612575	3.20874	0.0108917	0.00278422	0.0645168	0.0241009
chr2	135782787	135782887	2083393	0	+	0.36	(0.33,0.36]	chr2	195478	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	43	2	1.65713	2.6123700000000003	3.56761	0.0528205	5.36554e-6	0.195536	1.64061e-4
chr12	56110625	56110692	12898067	0	+	0.447761	(0.42,0.455]	chr12	1004157	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11:ENST00000552266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	32	2	2.33282	2.61237	2.89192	0.00677333	0.00157686	0.0462932	0.015761
chr7	158732064	158732162	9159288	0	-	0.387755	(0.36,0.39]	chr7	699685	12	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.45656	2.61217	2.76778	0.0100637	0.00365703	0.0624019	0.0307238
chr9	77720631	77720730	10699835	0	-	0.353535	(0.33,0.36]	chr9	809634	47	UTR3	UTR3:EXON_MRNA	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.31026	2.61205	2.91384	0.0519897	0.0021527	0.18423900000000001	0.0208395
chr11	14457743	14457823	12281546	0	-	0.3375	(0.33,0.36]	chr11	949564	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000532088.1:ENST00000525214.1:ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	2.44986	2.61201	2.77416	0.00563343	8.34192e-4	0.0422191	0.00978328
chr10	68645177	68645274	11090646	0	+	0.412371	(0.39,0.42]	chr10	842885	6	CDS	CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	2.19876	2.611965	3.02517	0.00372927	8.3811e-4	0.031224	0.00981548
chr17	15510263	15510362	16456724	0	-	0.373737	(0.36,0.39]	chr17	1343297	29	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	33	2	2.53311	2.61173	2.69035	0.00345778	0.00123789	0.0293796	0.013161
chr22	39314685	39314765	18513212	0	-	0.575	(0.53,0.59]	chr22	1580598	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000467105.1:ENST00000402527.5:ENST00000481985.5:ENST00000471290.1:ENST00000453303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	34	244	2	2.52333	2.6117	2.70007	1.35959e-5	2.38648e-6	3.8923e-4	8.32518e-5
chr16	68190767	68190858	15714912	0	+	0.461538	(0.455,0.49]	chr16	1251034	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.53286	2.611695	2.69053	0.0282409	0.0182983	0.124386	0.0925808
chr22	49580616	49580716	18543672	0	-	0.48	(0.455,0.49]	chr22	1583956	53	INTRON	INTRON	C22orf34	ENSG00000188511.12	ENST00000414287.5:ENST00000416411.1	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	2.53286	2.611695	2.69053	0.0282409	0.0182983	0.124386	0.0925808
chr6	36927977	36928076	7135790	0	+	0.464646	(0.455,0.49]	chr6	549805	47	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.53286	2.611695	2.69053	0.0282409	0.0182983	0.124386	0.0925808
chr3	186786218	186786273	3958242	0	+	0.290909	(0.29,0.33]	chr3	333856	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	EIF4A2:MIR1248	ENSG00000156976.17:ENSG00000283958.1	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000466362.1:ENST00000468362.5:ENST00000492144.5:ENST00000465792.1:ENST00000629190.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	6	27	2	2.27431	2.611375	2.94844	0.00432139	0.00217122	0.0335176	0.0208941
chr6	31779676	31779745	7662400	0	-	0.623188	(0.59,1]	chr6	585262	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000463184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.61074	2.6111199999999997	2.6115	0.025486	0.00584247	0.117089	0.0422426
chr12	56273183	56273254	13349849	0	-	0.492958	(0.49,0.53]	chr12	1051004	1	CDS	CDS:UTR3:EXON_MRNA	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5:ENST00000542324.6:ENST00000546621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	71	2	2.54541	2.61095	2.67649	2.65074e-4	2.28191e-4	0.00395787	0.00379211
chr5	1814338	1814415	5852791	0	+	0.519481	(0.49,0.53]	chr5	460315	1	CDS	CDS:EXON_MRNA	NDUFS6	ENSG00000145494.12	ENST00000274137.10:ENST00000469176.1	protein_coding	protein_coding	protein_coding	protein_coding	11	71	2	2.54541	2.61095	2.67649	2.65074e-4	2.28191e-4	0.00395787	0.00379211
chr19	10115683	10115751	17457675	0	-	0.573529	(0.53,0.59]	chr19	1460376	1	CDS	CDS:EXON_MRNA	EIF3G	ENSG00000130811.12	ENST00000253108.9:ENST00000593054.5:ENST00000590158.1:ENST00000589454.5:ENST00000587146.5:ENST00000588709.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	36	2	2.20093	2.610735	3.02054	0.00577011	0.00507963	0.0426551	0.037544
chr12	123596924	123597021	13127190	0	+	0.329897	(0.29,0.33]	chr12	1025792	3	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000543425.1:ENST00000262225.8:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	49	2	1.69422	2.610575	3.52693	0.0117607	7.50057e-6	0.0686664	2.17987e-4
chr9	131198615	131198715	10496373	0	+	0.59	(0.53,0.59]	chr9	793351	15	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	103	2	2.59035	2.6105099999999997	2.63067	1.20217e-4	9.21351e-5	0.00209719	0.00184494
chr17	8204870	8204970	16432115	0	-	0.68	(0.59,1]	chr17	1340326	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5:ENST00000578549.5:ENST00000580998.5:ENST00000578753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	64	2	1.8279	2.61041	3.39292	0.015383	0.00192565	0.0833374	0.0191769
chr22	37232800	37232893	18503572	0	-	0.634409	(0.59,1]	chr22	1578961	1	CDS_START	CDS_START:CDS:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11:ENST00000406508.5:ENST00000405484.5:ENST00000441619.5:ENST00000469532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.44587	2.6100250000000003	2.77418	0.0160729	0.0105307	0.0860154	0.0644466
chr6	31791609	31791673	7662538	0	-	0.625	(0.59,1]	chr6	585320	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5:ENST00000489979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.44587	2.6100250000000003	2.77418	0.0160729	0.0105307	0.0860154	0.0644466
chr20	43705218	43705288	17794411	0	+	0.528571	(0.49,0.53]	chr20	1504233	1	CDS	CDS:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.13501	2.60994	3.08487	0.0287874	6.09273e-4	0.128869	0.00760626
chr1	206733597	206733694	683411	0	+	0.474227	(0.455,0.49]	chr1	69024	10	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.12994	2.609775	3.08961	0.0304832	0.00445157	0.130204	0.0340751
chr1	166748166	166748265	519526	0	+	0.414141	(0.39,0.42]	chr1	55780	9	EXON_PSEUDO	EXON_PSEUDO	RPL4P2	ENSG00000232341.2	ENST00000447259.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	35	2	2.18155	2.609745	3.03794	0.0283931	1.79125e-4	0.127654	0.00289872
chr14	52641198	52641296	14630042	0	-	0.397959	(0.39,0.42]	chr14	1145962	14	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.27012	2.609645	2.94917	0.00945558	0.00121791	0.0594007	0.0130188
chr1	3889775	3889867	838269	0	-	0.413043	(0.39,0.42]	chr1	84315	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.59744	2.609375	2.62131	0.00609677	0.00572981	0.0439136	0.0417368
chr1	22091815	22091914	93082	0	+	0.444444	(0.42,0.455]	chr1	10799	4	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	1.87159	2.6092750000000002	3.34696	0.0214479	2.50958e-5	0.102998	5.82876e-4
chr2	183002197	183002269	3060703	0	-	0.263889	[0,0.29]	chr2	271410	2	CDS	CDS:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	2.44493	2.6092449999999996	2.77356	0.00386792	9.10413e-4	0.0322452	0.0103519
chr16	4455846	4455939	15501311	0	+	0.344086	(0.33,0.36]	chr16	1229037	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJA3	ENSG00000103423.14	ENST00000431375.6:ENST00000355296.8:ENST00000576911.5:ENST00000262375.11:ENST00000576180.1:ENST00000574393.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	2.51887	2.609185	2.6995	0.0358636	0.017838	0.147298	0.0934844
chr2	190979771	190979866	3087889	0	-	0.357895	(0.33,0.36]	chr2	272862	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2:ENST00000361099.8:ENST00000673762.1:ENST00000540176.6:ENST00000674081.1:ENST00000674028.1:ENST00000673858.1:ENST00000423282.2:ENST00000673863.1:ENST00000673832.1:ENST00000673942.1:ENST00000673777.1:ENST00000673734.1:ENST00000409465.5:ENST00000674080.1:ENST00000673952.1:ENST00000674153.1:ENST00000673841.1:ENST00000392322.7:ENST00000452281.6:ENST00000673885.1:ENST00000392323.6:ENST00000464072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	2.51887	2.609185	2.6995	0.0358636	0.017838	0.147298	0.0934844
chr6	17609729	17609828	7070300	0	+	0.333333	(0.33,0.36]	chr6	541144	15	UTR3	UTR3:EXON_MRNA	FAM8A1	ENSG00000137414.6	ENST00000259963.4	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.51887	2.609185	2.6995	0.0358636	0.017838	0.147298	0.0934844
chr7	131489409	131489508	8535497	0	+	0.353535	(0.33,0.36]	chr7	651710	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000352689.11:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.51887	2.609185	2.6995	0.0358636	0.017838	0.147298	0.0934844
chr7	158801569	158801669	9160006	0	-	0.36	(0.33,0.36]	chr7	699808	21	INTRON	INTRON	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.51887	2.609185	2.6995	0.0358636	0.017838	0.147298	0.0934844
chrX	124045231	124045299	18851998	0	+	0.338235	(0.33,0.36]	chrX	1606184	2	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.51887	2.609185	2.6995	0.0358636	0.017838	0.147298	0.0934844
chr3	152459270	152459327	3818469	0	+	0.421053	(0.42,0.455]	chr3	325700	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	33	2	2.59462	2.6090400000000002	2.62346	0.0062772	0.00164881	0.0445415	0.0163523
chr1	207685356	207685456	689238	0	+	0.29	[0,0.29]	chr1	69987	10	INTRON	INTRON	CR1L	ENSG00000197721.17	ENST00000508064.7:ENST00000530905.1:ENST00000294997.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	17	2	1.94841	2.60901	3.26961	0.0427374	0.00229774	0.168094	0.0210664
chr15	84680772	84680832	15420969	0	-	0.416667	(0.39,0.42]	chr15	1219627	2	CDS	CDS:EXON_MRNA:INTRON	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000558217.5:ENST00000455959.7:ENST00000560409.5:ENST00000558196.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	97	2	2.55307	2.60901	2.66495	7.09177e-5	2.78501e-5	0.00149851	6.37768e-4
chr2	152760233	152760331	2139525	0	+	0.285714	[0,0.29]	chr2	198151	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000463690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	1.94841	2.60901	3.26961	0.0427374	0.00229774	0.168094	0.0210664
chr8	47826723	47826792	9816026	0	-	0.681159	(0.59,1]	chr8	742585	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	68	2	2.60638	2.60894	2.6115	0.00584247	0.00223524	0.0422426	0.021278
chr10	26748470	26748569	11420661	0	-	0.282828	[0,0.29]	chr10	870518	20	UTR3	UTR3:EXON_MRNA	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.42645	2.608535	2.79062	0.0123114	0.00169679	0.070688	0.01759
chr4	57015578	57015656	4851132	0	+	0.320513	(0.29,0.33]	chr4	399812	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5:ENST00000510355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	24	2	1.88142	2.6084300000000002	3.33544	0.0142455	0.0016889	0.0779233	0.0165476
chr12	21635430	21635520	13236602	0	-	0.311111	(0.29,0.33]	chr12	1037941	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000648372.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000470985.3:ENST00000542765.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	35	2	2.34203	2.60831	2.87459	0.010113	1.72733e-4	0.0626311	0.00280648
chr1	222630000	222630097	723965	0	+	0.412371	(0.39,0.42]	chr1	72962	26	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1:ENST00000354906.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.49701	2.608065	2.71912	0.0339607	0.0163125	0.141431	0.0866586
chr2	61188909	61188989	2687386	0	-	0.4	(0.39,0.42]	chr2	239907	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000436269.1:ENST00000492604.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.49701	2.608065	2.71912	0.0339607	0.0163125	0.141431	0.0866586
chr20	18551088	18551175	17719792	0	+	0.390805	(0.39,0.42]	chr20	1495733	1	CDS	CDS:EXON_MRNA:INTRON	SEC23B	ENSG00000101310.17	ENST00000336714.8:ENST00000262544.6:ENST00000643747.1:ENST00000650089.1:ENST00000377465.6:ENST00000422877.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.49701	2.608065	2.71912	0.0339607	0.0163125	0.141431	0.0866586
chr5	37298867	37298922	6540018	0	-	0.418182	(0.39,0.42]	chr5	506513	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.49701	2.608065	2.71912	0.0339607	0.0163125	0.141431	0.0866586
chr5	95658797	95658897	6107400	0	+	0.41	(0.39,0.42]	chr5	478166	1	SS3_PROX	SS3_PROX:INTRON	RFESD	ENSG00000175449.14	ENST00000508206.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	15	2	2.49701	2.608065	2.71912	0.0339607	0.0163125	0.141431	0.0866586
chr1	93137515	93137613	354911	0	+	0.306122	(0.29,0.33]	chr1	34953	6	UTR3	UTR3:EXON_MRNA	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000370298.9	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.59395	2.6080300000000003	2.62211	0.0249836	0.00310562	0.114013	0.0274272
chr12	68842546	68842646	12941214	0	+	0.31	(0.29,0.33]	chr12	1008678	28	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MDM2	ENSG00000135679.26	ENST00000258149.11:ENST00000540709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	2.59395	2.6080300000000003	2.62211	0.0249836	0.00310562	0.114013	0.0274272
chr4	52713769	52713869	4829922	0	+	0.59	(0.53,0.59]	chr4	398211	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR:LINC01618	ENSG00000226950.8:ENSG00000250302.3	ENST00000411630.7:ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2:ENST00000653147.1:ENST00000623036.1	lncRNA	lncRNA	lncRNA	lncRNA	7	65	2	1.87133	2.6076699999999997	3.34401	0.0308819	6.89617e-6	0.130016	2.23425e-4
chr1	107058423	107058520	388495	0	+	0.340206	(0.33,0.36]	chr1	37653	7	UTR3	UTR3:EXON_MRNA:INTRON	PRMT6	ENSG00000198890.9	ENST00000370078.2:ENST00000650338.1:ENST00000649727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	17	2	2.07736	2.6074200000000003	3.13748	0.0442037	0.00379835	0.172163	0.0307587
chr4	139389284	139389384	5128469	0	+	0.34	(0.33,0.36]	chr4	415252	13	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.07736	2.6074200000000003	3.13748	0.0442037	0.00379835	0.172163	0.0307587
chr6	10756466	10756518	7048722	0	+	0.442308	(0.42,0.455]	chr6	539799	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5:ENST00000478732.1:ENST00000486421.1:ENST00000467229.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	37	2	2.54043	2.60708	2.67373	0.00705852	5.59707e-4	0.047732	0.00771312
chr11	9437826	9437900	11792808	0	+	0.378378	(0.36,0.39]	chr11	902918	2	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	2.29974	2.60703	2.91432	0.00926291	4.97991e-5	0.0586162	0.00102381
chr3	47587424	47587522	4161755	0	-	0.510204	(0.49,0.53]	chr3	348302	23	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.60116	2.60703	2.6129	0.0056515	0.0052746	0.0422191	0.0389109
chr7	107146384	107146461	8455074	0	+	0.519481	(0.49,0.53]	chr7	645822	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5:ENST00000488792.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.60116	2.60703	2.6129	0.0056515	0.0052746	0.0422191	0.0389109
chr7	27458554	27458652	8739180	0	-	0.397959	(0.39,0.42]	chr7	667100	5	EXON_PSEUDO	EXON_PSEUDO	EIF4HP1	ENSG00000233830.2	ENST00000453115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	42	2	2.48556	2.60679	2.72802	0.00384158	3.73817e-4	0.0320512	0.00520009
chr1	202736302	202736392	1451797	0	-	0.488889	(0.455,0.49]	chr1	145799	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.08503	2.6067299999999998	3.12843	0.0158994	0.00392855	0.0856643	0.0322851
chr7	851949	852043	8093681	0	+	0.478723	(0.455,0.49]	chr7	618431	1	CDS	CDS:EXON_MRNA	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000450881.5:ENST00000429178.5:ENST00000433212.5:ENST00000464442.5:ENST00000480475.5:ENST00000488628.1:ENST00000463848.1:ENST00000457861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.08503	2.6067299999999998	3.12843	0.0158994	0.00392855	0.0856643	0.0322851
chr10	70421846	70421946	11100449	0	+	0.53	(0.49,0.53]	chr10	844350	2	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	11	70	2	2.48144	2.6067	2.73196	3.65807e-4	2.35335e-4	0.0054989	0.00356494
chr12	6570266	6570359	13187058	0	-	0.344086	(0.33,0.36]	chr12	1032249	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000646322.1:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000642686.1:ENST00000645143.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000535717.2:ENST00000646608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	76	2	2.37682	2.6065199999999997	2.83622	3.11498e-4	1.09088e-5	0.00449391	3.24674e-4
chr10	74095755	74095855	11117410	0	+	0.61	(0.59,1]	chr10	846251	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	72	2	1.72824	2.606405	3.48457	0.0471232	1.16515e-4	0.179872	0.0020505
chr19	46787771	46787865	17595595	0	-	0.702128	(0.59,1]	chr19	1481428	5	CDS	CDS:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	9	117	2	2.56487	2.606405	2.64794	0.00117129	4.56002e-4	0.0127267	0.00646045
chr6	136278046	136278137	7982503	0	-	0.43956	(0.42,0.455]	chr6	610361	3	CDS	CDS:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5:ENST00000533621.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	1.58956	2.6063549999999998	3.62315	0.0485703	4.234e-4	0.175495	0.00613535
chr1	150560288	150560381	468533	0	+	0.580645	(0.53,0.59]	chr1	47508	2	UTR3	UTR3:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	50	2	1.98183	2.6063400000000003	3.2308500000000002	0.00781631	2.81517e-4	0.0519574	0.00415519
chr18	77993634	77993731	17184469	0	-	0.546392	(0.53,0.59]	chr18	1410280	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662085.1:ENST00000582805.1:ENST00000656930.1:ENST00000578833.3	lncRNA	lncRNA	lncRNA	lncRNA	15	112	2	2.39232	2.6063099999999997	2.8203	4.08341e-4	1.52679e-5	0.00600264	3.90063e-4
chr11	9424913	9424990	11792669	0	+	0.415584	(0.39,0.42]	chr11	902866	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000530037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	2.34349	2.60622	2.86895	0.0169272	0.00177945	0.0890655	0.0172974
chr2	43946177	43946243	2623538	0	-	0.378788	(0.36,0.39]	chr2	236200	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.81435	2.60619	3.39803	0.0302191	0.00122711	0.129773	0.0130695
chr21	39178448	39178547	18255566	0	-	0.464646	(0.455,0.49]	chr21	1547880	1	CDS	CDS:UTR3:EXON_MRNA	PSMG1	ENSG00000183527.12	ENST00000331573.8:ENST00000481921.5:ENST00000411828.5:ENST00000380900.2:ENST00000431628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	44	2	2.25667	2.6059650000000003	2.95526	0.00445666	2.88167e-4	0.0346553	0.00423739
chr14	99502718	99502806	14481696	0	+	0.511364	(0.49,0.53]	chr14	1131369	1	CDS	CDS:EXON_MRNA	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	67	2	2.28265	2.6059099999999997	2.92917	0.00205195	4.42985e-5	0.0201238	9.29789e-4
chrX	21409113	21409213	18606174	0	+	0.28	[0,0.29]	chrX	1589107	338	INTRON	INTRON	CNKSR2	ENSG00000149970.16	ENST00000642501.1:ENST00000642359.1:ENST00000643841.1:ENST00000645038.1:ENST00000425654.7:ENST00000379510.5:ENST00000543067.6:ENST00000644798.1:ENST00000645679.1:ENST00000644832.1:ENST00000643171.1:ENST00000279451.9:ENST00000645245.1:ENST00000646175.1:ENST00000644585.1:ENST00000644295.1:ENST00000645074.1:ENST00000645791.1:ENST00000642565.1:ENST00000644095.1:ENST00000642460.1:ENST00000643309.1:ENST00000643220.1:ENST00000485012.2:ENST00000647532.1:ENST00000647423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	2.15488	2.6059099999999997	3.05694	0.0436536	1.83756e-4	0.170594	0.00296795
chr5	179833684	179833782	6415272	0	+	0.622449	(0.59,1]	chr5	499331	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	6	78	2	1.78511	2.605785	3.42646	0.0261127	1.57704e-4	0.118976	0.00261303
chr15	57954802	57954900	15305102	0	-	0.438776	(0.42,0.455]	chr15	1208082	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.34191	2.6057699999999997	2.86963	0.0159091	4.62477e-4	0.0854674	0.00613242
chr3	101457436	101457535	4330776	0	-	0.454545	(0.42,0.455]	chr3	361246	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	SENP7:RP11-144C15.2	ENSG00000138468.16:ENSG00000282978.1	ENST00000394095.7:ENST00000314261.11:ENST00000394094.6:ENST00000394091.5:ENST00000348610.3:ENST00000635481.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	5	35	2	2.34191	2.6057699999999997	2.86963	0.0159091	4.62477e-4	0.0854674	0.00613242
chr7	92609979	92610079	8924939	0	-	0.3	(0.29,0.33]	chr7	681136	52	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	1.74619	2.60576	3.46533	0.0509174	2.24958e-5	0.181793	5.90075e-4
chr9	125238827	125238883	10856250	0	-	0.339286	(0.33,0.36]	chr9	822386	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	29	2	1.82394	2.6056150000000002	3.38729	0.0494504	1.20567e-4	0.18557	0.00210079
chr11	5340512	5340607	12241497	0	-	0.347368	(0.33,0.36]	chr11	946157	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	44	2	1.68466	2.6055	3.52634	0.0351252	7.28639e-6	0.145575	2.13219e-4
chr2	230879071	230879159	2422260	0	+	0.5	(0.49,0.53]	chr2	218129	5	UTR3	UTR3:EXON_MRNA	ITM2C	ENSG00000135916.16	ENST00000326427.11:ENST00000335005.10:ENST00000326407.10	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.26641	2.60522	2.94403	0.0190546	0.00122634	0.093872	0.0130695
chr12	49763187	49763284	12869274	0	+	0.597938	(0.59,1]	chr12	999645	4	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	5	69	2	1.90752	2.6051100000000003	3.3027	0.0282297	2.94605e-4	0.127287	0.00432147
chr5	10307624	10307716	6447180	0	-	0.771739	(0.59,1]	chr5	502204	1	UTR5	UTR5:EXON_MRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	69	2	1.90752	2.6051100000000003	3.3027	0.0282297	2.94605e-4	0.127287	0.00432147
chr1	15807549	15807649	867310	0	-	0.51	(0.49,0.53]	chr1	88163	1	CDS_START	CDS_START:CDS:EXON_MRNA	UQCRHL	ENSG00000233954.6	ENST00000483273.2	protein_coding	protein_coding	protein_coding	protein_coding	26	163	2	2.39402	2.6050649999999997	2.81611	5.8379e-5	2.22944e-6	0.00129108	7.85272e-5
chrX	124045299	124045368	18851999	0	+	0.449275	(0.42,0.455]	chrX	1606184	3	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1:ENST00000435215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	40	2	1.97151	2.60495	3.23839	0.0084649	2.92986e-4	0.0546473	0.00464297
chr8	74603334	74603425	9894968	0	-	0.461538	(0.455,0.49]	chr8	748013	2	EXON_PSEUDO	EXON_PSEUDO	PCBP2P2	ENSG00000253341.1	ENST00000517662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	22	131	2	2.54689	2.6048549999999997	2.66282	1.01143e-4	5.83886e-6	0.00198069	1.76187e-4
chr10	96190039	96190136	11637382	0	-	0.42268	(0.42,0.455]	chr10	886265	10	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	BLNK:NPM1P25	ENSG00000095585.17:ENSG00000229417.1	ENST00000224337.10:ENST00000429734.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	4	30	2	2.03532	2.604825	3.17433	0.040947	3.82052e-4	0.163285	0.0052929
chr12	57070673	57070746	13353888	0	-	0.424658	(0.42,0.455]	chr12	1052248	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1:ENST00000553654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	2.03532	2.604645	3.17397	0.040947	0.0031821	0.163285	0.0267094
chr15	44606024	44606091	15254586	0	-	0.447761	(0.42,0.455]	chr15	1202638	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000558093.1:ENST00000682915.1:ENST00000558988.5:ENST00000683255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.03532	2.604645	3.17397	0.040947	0.0031821	0.163285	0.0267094
chr2	15475783	15475880	2529248	0	-	0.43299	(0.42,0.455]	chr2	227504	2	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.03532	2.604645	3.17397	0.040947	0.0031821	0.163285	0.0267094
chr3	136332417	136332514	3763187	0	+	0.443299	(0.42,0.455]	chr3	321908	21	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000471595.5:ENST00000478469.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.03532	2.604645	3.17397	0.040947	0.0031821	0.163285	0.0267094
chr8	102295635	102295708	9983094	0	-	0.452055	(0.42,0.455]	chr8	753258	1	CDS	CDS:EXON_MRNA	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.03532	2.604645	3.17397	0.040947	0.0031821	0.163285	0.0267094
chr6	159784665	159784756	8049119	0	-	0.461538	(0.455,0.49]	chr6	615277	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000536807.1:ENST00000543532.5:ENST00000538530.5:ENST00000467544.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	84	2	2.06258	2.6044150000000004	3.14625	0.00110413	9.46864e-6	0.0127344	2.63474e-4
chr12	49051846	49051943	13323537	0	-	0.57732000000000006	(0.53,0.59]	chr12	1045564	11	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	1.90953	2.60414	3.29875	0.0517711	0.00191422	0.193577	0.018324
chr3	48599634	48599710	4168703	0	-	0.539474	(0.53,0.59]	chr3	349572	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000471189.5:ENST00000480561.5:ENST00000415995.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	26	2	1.90953	2.60414	3.29875	0.0517711	0.00191422	0.193577	0.018324
chr3	101682368	101682468	4331667	0	-	0.33	(0.29,0.33]	chr3	361337	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	69	2	2.42855	2.6040900000000002	2.77963	2.32642e-4	2.20356e-5	0.00355641	5.7946e-4
chr17	28632048	28632143	16486593	0	-	0.484211	(0.455,0.49]	chr17	1348008	1	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000577261.1:ENST00000582417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	28	2	1.90433	2.604085	3.30384	0.0185466	0.00184955	0.0932453	0.0178046
chr7	129830828	129830926	9061525	0	-	0.459184	(0.455,0.49]	chr7	691964	2	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.35644	2.6040799999999997	2.85172	0.010864	0.00555877	0.0643837	0.0405952
chr15	90966488	90966578	15439134	0	-	0.455556	(0.455,0.49]	chr15	1221335	6	UTR3	UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	1.95898	2.604055	3.24913	0.047107	0.00239443	0.172269	0.0225356
chr19	47745559	47745659	17363623	0	+	0.66	(0.59,1]	chr19	1441386	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	NOP53	ENSG00000105373.19	ENST00000246802.10:ENST00000594525.5:ENST00000600410.5:ENST00000598681.5:ENST00000599253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	92	2	2.01818	2.60396	3.18974	0.00523578	5.51091e-4	0.038667	0.00760492
chr16	81540664	81540764	15770351	0	+	0.52	(0.49,0.53]	chr16	1255454	63	INTRON	INTRON	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.48488	2.6037	2.72252	0.032052	0.0161474	0.133433	0.0860154
chr19	50399427	50399484	17375961	0	+	0.526316	(0.49,0.53]	chr19	1444438	2	CDS	CDS:EXON_MRNA	POLD1	ENSG00000062822.15	ENST00000600859.5:ENST00000599857.7:ENST00000613923.6:ENST00000601098.6:ENST00000643407.1:ENST00000440232.7:ENST00000595904.6:ENST00000600746.1:ENST00000593887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.48488	2.6037	2.72252	0.032052	0.0161474	0.133433	0.0860154
chr20	34927775	34927868	17767087	0	+	0.505376	(0.49,0.53]	chr20	1500611	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000477932.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	17	2	2.48488	2.6037	2.72252	0.032052	0.0161474	0.133433	0.0860154
chr6	2833707	2833783	7570210	0	-	0.513158	(0.49,0.53]	chr6	577589	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.48488	2.6037	2.72252	0.032052	0.0161474	0.133433	0.0860154
chr9	97671099	97671199	10380906	0	+	0.53	(0.49,0.53]	chr9	781834	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NCBP1	ENSG00000136937.13	ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.48488	2.6037	2.72252	0.032052	0.0161474	0.133433	0.0860154
chrX	152717485	152717578	18912215	0	+	0.526882	(0.49,0.53]	chrX	1610490	4	CDS	CDS:EXON_MRNA	MAGEA2B	ENSG00000183305.14	ENST00000331220.6:ENST00000370293.6:ENST00000423993.5:ENST00000682532.1:ENST00000453150.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.48488	2.6037	2.72252	0.032052	0.0161474	0.133433	0.0860154
chr19	44878520	44878620	17349382	0	+	0.59	(0.53,0.59]	chr19	1439156	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NECTIN2	ENSG00000130202.10	ENST00000252485.8:ENST00000252483.10:ENST00000591581.1:ENST00000585601.1	protein_coding	protein_coding	protein_coding	protein_coding	3	26	2	2.54844	2.60369	2.65894	0.0193255	0.00663226	0.0943643	0.0461575
chr17	59668858	59668940	16295318	0	+	0.402439	(0.39,0.42]	chr17	1321681	2	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5	protein_coding	protein_coding	protein_coding	protein_coding	13	90	2	2.13033	2.60363	3.07693	0.00865856	1.0594e-6	0.0557159	4.20053e-5
chr11	111853704	111853736	12603216	0	-	0.40625	(0.39,0.42]	chr11	977133	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	ALG9:RP11-108O10.8	ENSG00000086848.15:ENSG00000258529.5	ENST00000616540.5:ENST00000614444.4:ENST00000619129.4:ENST00000398006.6:ENST00000531154.5:ENST00000622211.4:ENST00000530851.6:ENST00000613181.4:ENST00000527714.5:ENST00000618252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.34349	2.603585	2.86368	0.0169272	0.0101619	0.0890655	0.0627153
chr6	78936011	78936110	7805048	0	-	0.393939	(0.39,0.42]	chr6	597905	17	UTR3	UTR3:EXON_MRNA	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.34349	2.603585	2.86368	0.0169272	0.0101619	0.0890655	0.0627153
chrX	40713777	40713842	19047112	0	-	0.415385	(0.39,0.42]	chrX	1618984	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000482034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.34349	2.603585	2.86368	0.0169272	0.0101619	0.0890655	0.0627153
chr16	53157347	53157444	15665903	0	+	0.42268	(0.42,0.455]	chr16	1245065	13	CDS	CDS:UTR5:EXON_MRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.57051	2.60358	2.63665	0.0265466	0.0048172	0.120071	0.0365653
chr1	89933861	89933960	349102	0	+	0.494949	(0.49,0.53]	chr1	34169	8	CDS	CDS:EXON_MRNA	LRRC8D	ENSG00000171492.14	ENST00000337338.9:ENST00000394593.7:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.56183	2.603555	2.64528	0.0261296	0.0202736	0.118976	0.0984041
chr1	246186842	246186942	1596145	0	-	0.5	(0.49,0.53]	chr1	158556	2	UTR5	UTR5:EXON_MRNA:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.56183	2.603555	2.64528	0.0261296	0.0202736	0.118976	0.0984041
chr19	19024812	19024910	17501944	0	-	0.510204	(0.49,0.53]	chr19	1468620	3	CDS	CDS:UTR3:EXON_MRNA	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.56183	2.603555	2.64528	0.0261296	0.0202736	0.118976	0.0984041
chr4	13336481	13336562	4721270	0	+	0.493827	(0.49,0.53]	chr4	391938	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HSP90AB2P	ENSG00000205940.8	ENST00000602906.1:ENST00000507090.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	2	17	2	2.56183	2.603555	2.64528	0.0261296	0.0202736	0.118976	0.0984041
chr8	37749793	37749852	9289988	0	+	0.508475	(0.49,0.53]	chr8	710353	1	CDS	CDS:EXON_MRNA	ERLIN2	ENSG00000147475.17	ENST00000518526.5:ENST00000519638.3:ENST00000521993.3:ENST00000521644.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	17	2	2.56183	2.603555	2.64528	0.0261296	0.0202736	0.118976	0.0984041
chr11	17367177	17367262	11827896	0	+	0.482353	(0.455,0.49]	chr11	905439	3	CDS	CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.35515	2.603435	2.85172	0.0140117	0.010864	0.0767536	0.0643837
chr15	64376742	64376823	15341504	0	-	0.419753	(0.39,0.42]	chr15	1211059	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634318.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000635320.1:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	2.18155	2.6033600000000003	3.02517	0.0283931	8.3811e-4	0.127654	0.00981548
chr7	135929529	135929628	9085576	0	-	0.393939	(0.39,0.42]	chr7	693646	29	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	11	67	2	2.48556	2.60336	2.72116	0.00384158	2.88247e-5	0.0320512	6.56466e-4
chr1	31906614	31906711	921166	0	-	0.371134	(0.36,0.39]	chr1	96904	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	18	2	2.1437	2.60331	3.06292	0.0340515	0.00499846	0.141465	0.0370021
chr6	170583685	170583747	8091284	0	-	0.354839	(0.33,0.36]	chr6	618084	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000392090.6:ENST00000545869.5:ENST00000542896.5:ENST00000544866.5:ENST00000539212.5:ENST00000538195.1:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2:ENST00000544755.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	60	2	1.99105	2.60318	3.21531	0.0055161	5.68473e-6	0.0414985	1.72431e-4
chr17	50724564	50724664	16264961	0	+	0.32	(0.29,0.33]	chr17	1319406	2	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	26	2	2.27411	2.603005	2.9319	0.00686811	0.00145571	0.0468903	0.0148357
chr12	112405944	112406037	13545894	0	-	0.408602	(0.39,0.42]	chr12	1066133	2	CDS	CDS:EXON_MRNA	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000553205.1:ENST00000424576.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	140	2	2.29223	2.60298	2.91373	5.05844e-5	2.63085e-6	0.00114113	9.05095e-5
chr20	49280484	49280571	17812193	0	+	0.356322	(0.33,0.36]	chr20	1506722	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1:ENSG10010137846.1	ENSG00000177410.13:ENSG00000277967.1	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000623640.1:ENST00000659056.1:ENST00000615977.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	18	92	2	2.2417	2.602945	2.96419	0.0010466	1.64882e-6	0.0123035	6.0825e-5
chr11	75404759	75404812	12023102	0	+	0.509434	(0.49,0.53]	chr11	926993	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000524851.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	42	253	2	2.48402	2.6027750000000003	2.72153	4.38136e-6	2.21582e-6	1.3924e-4	8.62674e-5
chr20	3753873	3753965	17882926	0	-	0.673913	(0.59,1]	chr20	1513638	5	UTR3	UTR3:EXON_MRNA	C20orf27	ENSG00000101220.18	ENST00000399672.5:ENST00000379772.4:ENST00000217195.12:ENST00000399683.7	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.59461	2.6026749999999996	2.61074	0.0259455	0.025486	0.117089	0.117079
chr3	40457417	40457471	3429563	0	+	0.722222	(0.59,1]	chr3	298302	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000465325.1:ENST00000396203.7:ENST00000416518.1:ENST00000435633.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.59461	2.6026749999999996	2.61074	0.0259455	0.025486	0.117089	0.117079
chr6	31792825	31792895	7662558	0	-	0.6	(0.59,1]	chr6	585335	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	58	2	2.11074	2.602645	3.09455	0.0305	7.92671e-4	0.130204	0.00933379
chr15	40663362	40663460	14883479	0	+	0.22449	[0,0.29]	chr15	1168843	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KNL1	ENSG00000137812.20	ENST00000346991.9:ENST00000399668.7:ENST00000526913.5:ENST00000531626.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	24	2	2.13178	2.60264	3.0735	0.00785095	0.00489392	0.0520241	0.0366648
chr10	34391142	34391242	11450001	0	-	0.32	(0.29,0.33]	chr10	873074	65	INTRON	INTRON	PARD3	ENSG00000148498.16	ENST00000545260.5:ENST00000545693.5:ENST00000374789.8:ENST00000374788.8:ENST00000346874.9:ENST00000374794.8:ENST00000350537.9:ENST00000374790.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	15	62	2	2.59713	2.6024700000000003	2.60781	1.36042e-4	1.13347e-4	0.0025162	0.00201153
chr3	150458460	150458536	3807487	0	+	0.368421	(0.36,0.39]	chr3	324961	2	CDS	CDS:UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000480589.1:ENST00000466814.1:ENST00000485421.1:ENST00000460316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	2.02118	2.6023300000000003	3.18348	0.0251625	0.00310315	0.117055	0.0263402
chr11	125653796	125653847	12194899	0	+	0.313726	(0.29,0.33]	chr11	940876	2	CDS	CDS:EXON_MRNA:INTRON	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	2.25579	2.6021150000000004	2.94844	0.00934624	0.00217122	0.0589275	0.0208941
chr12	101395541	101395639	13506213	0	-	0.387755	(0.36,0.39]	chr12	1061580	26	UTR3	UTR3:EXON_MRNA	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000550597.1:ENST00000551828.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	2.53311	2.602105	2.6711	0.00434596	0.00345778	0.0335517	0.0293796
chr17	1844577	1844631	16083991	0	+	0.481481	(0.455,0.49]	chr17	1293282	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10:ENST00000571725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.35214	2.60193	2.85172	0.0455621	0.010864	0.168044	0.0643837
chr20	10613740	10613837	17900112	0	-	0.484536	(0.455,0.49]	chr20	1514986	10	EXON_PSEUDO	EXON_PSEUDO	RP5-1099D15.1	ENSG00000235036.4	ENST00000456064.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	16	2	2.35214	2.60193	2.85172	0.0455621	0.010864	0.168044	0.0643837
chr3	161224929	161224996	3857657	0	+	0.477612	(0.455,0.49]	chr3	327593	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NMD3	ENSG00000169251.13	ENST00000468606.5:ENST00000460503.5:ENST00000493066.5:ENST00000473909.5:ENST00000472947.5:ENST00000351193.7:ENST00000463518.5:ENST00000476237.5:ENST00000460469.1:ENST00000478160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	16	2	2.35214	2.60193	2.85172	0.0455621	0.010864	0.168044	0.0643837
chr7	4767551	4767651	8109634	0	+	0.46	(0.455,0.49]	chr7	619657	52	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.35214	2.60193	2.85172	0.0455621	0.010864	0.168044	0.0643837
chrX	142203987	142204053	19261788	0	-	0.484848	(0.455,0.49]	chrX	1636103	1	UTR5	UTR5:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.35214	2.60193	2.85172	0.0455621	0.010864	0.168044	0.0643837
chr4	128271216	128271315	5639357	0	-	0.464646	(0.455,0.49]	chr4	449280	21	UTR3	UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	2.0456	2.60186	3.15812	0.00663817	8.56318e-5	0.0456262	0.00160672
chr1	42676566	42676662	161195	0	+	0.53125	(0.53,0.59]	chr1	20206	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPIH	ENSG00000171960.12	ENST00000372550.6:ENST00000678038.1:ENST00000676675.1:ENST00000304979.8:ENST00000677307.1:ENST00000677356.1:ENST00000677312.1:ENST00000461351.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	46	2	1.85636	2.601855	3.34735	0.0197135	1.46925e-4	0.0983378	0.0026854
chr1	113975492	113975591	418230	0	+	0.343434	(0.33,0.36]	chr1	41199	21	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.09934	2.60182	3.1043	0.0120497	5.89179e-4	0.0694419	0.00743488
chr4	102722955	102723041	5563501	0	-	0.511628	(0.49,0.53]	chr4	444304	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645348.1:ENST00000505239.1:ENST00000646451.1:ENST00000506478.1:ENST00000644965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.99044	2.6018049999999997	3.21317	0.0435903	3.08783e-4	0.170594	0.00445935
chr12	54292373	54292473	13343343	0	-	0.6	(0.59,1]	chr12	1049645	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	7	85	2	2.26579	2.60175	2.93771	0.00263137	0.00168288	0.0231864	0.0175167
chr6	31828241	31828337	7116689	0	+	0.572917	(0.53,0.59]	chr6	546209	3	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	21	147	2	2.19222	2.6016	3.01098	2.51415e-4	3.59383e-6	0.00379206	1.29307e-4
chr2	74209941	74209995	1891689	0	+	0.481481	(0.455,0.49]	chr2	179183	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000462026.2:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.51261	2.6015699999999997	2.69053	0.0182983	0.00280343	0.0925808	0.0242354
chr3	43718495	43718549	3441062	0	+	0.481481	(0.455,0.49]	chr3	299383	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	2.51261	2.6015699999999997	2.69053	0.0182983	0.00280343	0.0925808	0.0242354
chr11	119300471	119300569	12163753	0	+	0.387755	(0.36,0.39]	chr11	938080	8	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.56782	2.601515	2.63521	0.00659672	0.00633242	0.0460001	0.0446708
chr2	38482327	38482422	1748004	0	+	0.557895	(0.53,0.59]	chr2	169990	6	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	23	150	2	2.20866	2.60138	2.9941	1.1692e-4	1.37064e-5	0.0020526	3.92338e-4
chr1	117952296	117952352	428707	0	+	0.464286	(0.455,0.49]	chr1	42380	1	CDS	CDS:EXON_MRNA	WDR3	ENSG00000065183.16	ENST00000349139.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.50904	2.6012399999999998	2.69344	0.0310515	0.0176068	0.131262	0.0925619
chr12	120460357	120460457	13116280	0	+	0.46	(0.455,0.49]	chr12	1023783	5	UTR3	UTR3:EXON_MRNA	GATC	ENSG00000257218.6	ENST00000551765.6	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.50904	2.6012399999999998	2.69344	0.0310515	0.0176068	0.131262	0.0925619
chr17	82718571	82718671	16385060	0	+	0.48	(0.455,0.49]	chr17	1332780	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.50904	2.6012399999999998	2.69344	0.0310515	0.0176068	0.131262	0.0925619
chr7	139045304	139045404	9102034	0	-	0.49	(0.455,0.49]	chr7	694516	19	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.50904	2.6012399999999998	2.69344	0.0310515	0.0176068	0.131262	0.0925619
chr1	37981728	37981811	950224	0	-	0.349398	(0.33,0.36]	chr1	100113	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000489537.5:ENST00000461869.5:ENST00000470585.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	33	2	2.17058	2.60119	3.0318	0.01664	1.96415e-4	0.0878065	0.00311664
chr9	124412421	124412492	10850108	0	-	0.535211	(0.53,0.59]	chr9	821907	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1:ENST00000466951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	97	2	2.42789	2.600995	2.7741	5.31454e-4	3.5207e-5	0.00740832	7.72667e-4
chr19	11116858	11116928	17230149	0	+	0.528571	(0.49,0.53]	chr19	1419601	1	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000558013.5:ENST00000252444.9:ENST00000559340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	79	2	1.59806	2.600975	3.60389	0.0164861	8.75853e-7	0.0873033	3.5689000000000003e-05
chr5	14651940	14652039	6462530	0	-	0.535354	(0.53,0.59]	chr5	502940	1	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	88	2	2.14828	2.600975	3.05367	0.00373986	8.96417e-6	0.0312988	2.5207e-4
chr19	14091884	14091983	17478345	0	-	0.525253	(0.49,0.53]	chr19	1464173	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKACA	ENSG00000072062.15	ENST00000308677.9:ENST00000677951.1:ENST00000677971.1:ENST00000350356.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.49797	2.60052	2.70307	0.00843736	0.00363585	0.0546021	0.0298137
chr7	158773340	158773396	9159717	0	-	0.410714	(0.39,0.42]	chr7	699777	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1:ENST00000483958.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	1.87119	2.600495	3.3298	0.0373134	0.00165391	0.152293	0.0163614
chr17	42301274	42301364	16228028	0	+	0.577778	(0.53,0.59]	chr17	1312812	1	CDS	CDS:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	2.27113	2.6003749999999997	2.92962	0.0178853	0.0012954	0.0918323	0.0136936
chr16	30724074	30724172	15631066	0	+	0.581633	(0.53,0.59]	chr16	1240525	6	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	60	2	2.51629	2.600305	2.68432	0.00118971	5.70328e-4	0.0128045	0.00779621
chr7	5603495	5603556	8112099	0	+	0.606557	(0.59,1]	chr7	620029	1	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000444748.5:ENST00000447103.5:ENST00000405801.2:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	60	2	1.96394	2.60027	3.2366	0.0453144	4.06803e-4	0.174798	0.00552995
chr12	6537665	6537748	12713619	0	+	0.60241	(0.59,1]	chr12	986662	2	CDS	CDS:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000492719.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	569	2	2.3039	2.6001849999999997	2.89647	6.48483e-5	3.85527e-6	0.00126605	1.36508e-4
chr5	138467698	138467792	6244791	0	+	0.56383	(0.53,0.59]	chr5	486656	11	CDS	CDS:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.19041	2.600155	3.0099	0.00600486	0.00191981	0.042887	0.019137
chr10	97259552	97259628	11644762	0	-	0.407895	(0.39,0.42]	chr10	887057	3	CDS	CDS:EXON_MRNA	ARHGAP19-SLIT1:ARHGAP19	ENSG00000269891.2:ENSG00000213390.11	ENST00000479633.2:ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000371027.5:ENST00000466484.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.49426	2.600085	2.70591	0.0185716	0.0085468	0.0932453	0.0551026
chr11	34091980	34092056	11905407	0	+	0.421053	(0.42,0.455]	chr11	909565	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000528948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	129	2	2.01459	2.59993	3.18527	3.55027e-4	1.36106e-6	0.004974	5.70519e-5
chr1	114718168	114718216	1239597	0	-	0.458333	(0.455,0.49]	chr1	121345	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000483407.1:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	78	2	2.2939600000000002	2.599735	2.90551	7.7445e-4	2.43364e-5	0.00966722	5.70869e-4
chr17	81511902	81511985	16707882	0	-	0.662651	(0.59,1]	chr17	1377341	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	135	2	2.18805	2.5995749999999997	3.0111	0.00190031	1.19375e-4	0.0190143	0.00208353
chr16	177282	177311	15480751	0	+	0.62069	(0.59,1]	chr16	1224209	1	CDS	CDS:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	97	1195	2	2.39186	2.5995	2.80714	2.09885e-5	1.61759e-6	5.0507e-4	6.59391e-5
chr6	36489159	36489258	7134483	0	+	0.323232	(0.29,0.33]	chr6	549568	21	UTR3	UTR3:EXON_MRNA	KCTD20	ENSG00000112078.14	ENST00000536244.5:ENST00000373731.7:ENST00000449081.6	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	2.14085	2.5995	3.05815	0.0117968	1.75443e-4	0.0686664	0.00284534
chrX	16844934	16845034	18971681	0	-	0.37	(0.36,0.39]	chrX	1615428	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.56782	2.599485	2.63115	0.0245975	0.00659672	0.114841	0.0460001
chr5	146122491	146122587	6891129	0	-	0.395833	(0.39,0.42]	chr5	527459	1	CDS	CDS:UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	58	2	2.28336	2.59922	2.91508	5.28864e-4	4.41174e-4	0.006804	0.0062930699999999996
chr21	45474579	45474678	18145525	0	+	0.606061	(0.59,1]	chr21	1539685	2	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	2.06696	2.59918	3.1314	0.0170848	6.69043e-4	0.0897702	0.00820018
chr1	162526838	162526938	507531	0	+	0.33	(0.29,0.33]	chr1	54762	44	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	13	55	2	2.52637	2.599145	2.67192	2.43559e-4	1.94568e-4	0.00399705	0.00309
chr17	75777707	75777805	16684882	0	-	0.387755	(0.36,0.39]	chr17	1373459	14	UTR3	UTR3:EXON_MRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8	protein_coding	protein_coding	protein_coding	protein_coding	20	97	2	2.52442	2.599095	2.67377	5.31597e-5	2.16433e-5	0.00108035	5.7224e-4
chr6	27838570	27838661	7105168	0	+	0.461538	(0.455,0.49]	chr6	543469	10	UTR5	UTR5:EXON_MRNA	H2BC15	ENSG00000233822.5	ENST00000612898.1:ENST00000449538.3:ENST00000606613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	166	2	2.1322	2.59901	3.06582	2.10314e-4	2.07918e-7	0.00327655	1.17756e-5
chr3	139369313	139369367	4479590	0	-	0.462963	(0.455,0.49]	chr3	372237	2	CDS	CDS:UTR3:EXON_MRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	2.50703	2.5987799999999996	2.69053	0.0182983	6.13589e-4	0.0925808	0.00765301
chr11	9589589	9589688	11793807	0	+	0.272727	[0,0.29]	chr11	903118	11	UTR3	UTR3:EXON_MRNA:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	2.08434	2.598455	3.11257	0.0181581	0.00120521	0.0945306	0.0134827
chr16	85672737	85672836	15798080	0	+	0.424242	(0.42,0.455]	chr16	1257094	3	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	122	2	2.55945	2.59828	2.63711	6.2225e-5	1.23853e-5	0.00134309	3.28918e-4
chr10	46005463	46005557	11470918	0	-	0.37234	(0.36,0.39]	chr10	874825	5	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	13	60	2	2.19505	2.5981	3.00115	0.0012486	3.72487e-4	0.0137762	0.00518571
chr1	36341172	36341269	940166	0	-	0.402062	(0.39,0.42]	chr1	98983	17	UTR3	UTR3:EXON_MRNA	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	10	58	2	1.961	2.59808	3.23516	0.00719538	1.41395e-5	0.0486209	3.65815e-4
chr13	47763554	47763650	13724357	0	+	0.416667	(0.39,0.42]	chr13	1081244	2	EXON_PSEUDO	EXON_PSEUDO	NAP1L4P3	ENSG00000234145.1	ENST00000432820.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	58	2	1.961	2.59808	3.23516	0.00719538	1.41395e-5	0.0486209	3.65815e-4
chr17	1680991	1681054	16401620	0	-	0.412698	(0.39,0.42]	chr17	1334967	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000574728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	58	2	1.961	2.59808	3.23516	0.00719538	1.41395e-5	0.0486209	3.65815e-4
chr6	31806757	31806826	7662694	0	-	0.73913	(0.59,1]	chr6	585376	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	66	2	2.38157	2.59808	2.81459	0.00534794	0.00278977	0.0392783	0.0249234
chr11	7994981	7995049	11789495	0	+	0.470588	(0.455,0.49]	chr11	902517	1	CDS	CDS:UTR3:EXON_MRNA	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1:ENST00000528763.2:ENST00000677795.1:ENST00000532882.2:ENST00000677866.1:ENST00000530219.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.27492	2.597955	2.92099	0.0193827	0.00138399	0.0943643	0.0143168
chr11	59574595	59574694	12400592	0	-	0.464646	(0.455,0.49]	chr11	959394	3	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.27492	2.597955	2.92099	0.0193827	0.00138399	0.0943643	0.0143168
chr5	168549092	168549192	6968908	0	-	0.22	[0,0.29]	chr5	532791	7	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.40395	2.597555	2.79116	0.0210081	0.00287618	0.101116	0.0247002
chr5	180577566	180577665	6416569	0	+	0.282828	[0,0.29]	chr5	499475	35	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.40395	2.597555	2.79116	0.0210081	0.00287618	0.101116	0.0247002
chr1	215621212	215621311	714010	0	+	0.333333	(0.33,0.36]	chr1	72144	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KCTD3	ENSG00000136636.13	ENST00000259154.9:ENST00000495537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	2.17058	2.5972600000000003	3.02394	0.01664	8.89743e-4	0.0878065	0.0102057
chr17	42615041	42615139	16229326	0	+	0.632653	(0.59,1]	chr17	1313178	1	UTR3	UTR3:EXON_MRNA	TUBG1	ENSG00000131462.9	ENST00000680678.1:ENST00000681413.1:ENST00000680672.1:ENST00000681490.1:ENST00000681947.1:ENST00000588056.2:ENST00000251413.8:ENST00000589688.2:ENST00000681919.1:ENST00000681114.1:ENST00000680617.1:ENST00000679484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	31	2	2.42639	2.5972049999999998	2.76802	0.0409084	0.0158525	0.163285	0.0854671
chrX	48466961	48467053	19062831	0	-	0.597826	(0.59,1]	chrX	1620428	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5:ENST00000429543.2:ENST00000488083.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.42639	2.5972049999999998	2.76802	0.0409084	0.0158525	0.163285	0.0854671
chr3	113811861	113811958	3676143	0	+	0.329897	(0.29,0.33]	chr3	314510	26	UTR3	UTR3:EXON_MRNA	ATP6V1A	ENSG00000114573.10	ENST00000273398.8	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	2.57219	2.59715	2.62211	0.00310562	9.93325e-4	0.0274272	0.0111014
chr7	92607598	92607697	8924915	0	-	0.292929	(0.29,0.33]	chr7	681136	28	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	2.57219	2.59715	2.62211	0.00310562	9.93325e-4	0.0274272	0.0111014
chr1	205716393	205716492	1462019	0	-	0.343434	(0.33,0.36]	chr1	147460	37	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	12	55	2	2.35613	2.597085	2.83804	8.04677e-4	8.57053e-5	0.0100063	0.00160731
chr21	39349065	39349140	18257139	0	-	0.786667	(0.59,1]	chr21	1548179	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000436324.5:ENST00000380747.5:ENST00000491183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.4994	2.597085	2.69477	0.0333573	0.020208	0.137922	0.0978331
chr8	143915338	143915431	10146627	0	-	0.698925	(0.59,1]	chr8	762999	3	UTR3	UTR3:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8	protein_coding	protein_coding	protein_coding	protein_coding	2	31	2	2.4994	2.597085	2.69477	0.0333573	0.020208	0.137922	0.0978331
chr1	145111896	145111996	446147	0	+	0.34	(0.33,0.36]	chr1	43866	4	UTR3	UTR3:EXON_MRNA	FAM72D	ENSG00000215784.6	ENST00000400889.3	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	2.25264	2.597025	2.94141	0.00367014	1.08179e-4	0.0308215	0.00193141
chr12	51242750	51242849	12876229	0	+	0.313131	(0.29,0.33]	chr12	1000617	2	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	57	2	2.33272	2.59701	2.8613	0.00296866	1.84919e-5	0.0264052	4.55132e-4
chr7	100628072	100628136	8952237	0	-	0.609375	(0.59,1]	chr7	684170	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000473374.5:ENST00000473963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	86	2	1.96265	2.596975	3.2313	0.0238491	9.87985e-5	0.112466	0.00178726
chr22	21762346	21762446	18442374	0	-	0.41	(0.39,0.42]	chr22	1572508	28	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	29	150	2	2.40666	2.59686	2.78706	2.4014e-5	3.62478e-6	5.6648e-4	1.29307e-4
chr15	57954211	57954309	15305096	0	-	0.346939	(0.33,0.36]	chr15	1208082	9	UTR3	UTR3:EXON_MRNA:INTRON	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	1.82394	2.596765	3.36959	0.0494504	0.0014168	0.18557	0.0145694
chr16	85590370	85590469	15797225	0	+	0.494949	(0.49,0.53]	chr16	1256993	337	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	1.76393	2.596735	3.42954	0.0279906	0.00105489	0.123926	0.0123035
chr19	6415807	6415896	17442204	0	-	0.696629	(0.59,1]	chr19	1456780	1	CDS	CDS:EXON_MRNA	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000619396.4:ENST00000595223.5	protein_coding	protein_coding	protein_coding	protein_coding	9	114	2	2.58699	2.596685	2.60638	0.00223524	3.42382e-4	0.021278	0.00482513
chr1	631265	631362	481	0	+	0.463918	(0.455,0.49]	chr1	106	3	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	70	371	2	2.22771	2.59667	2.96563	9.91424e-6	6.43752e-8	3.00031e-4	3.83331e-6
chrX	154675345	154675443	19279025	0	-	0.469388	(0.455,0.49]	chrX	1638662	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.52734	2.5964850000000004	2.66563	0.00792433	0.0043075	0.0523592	0.0334284
chr1	71064973	71065073	1086851	0	-	0.31	(0.29,0.33]	chr1	110807	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	55	2	2.42855	2.5964799999999997	2.76441	2.69341e-4	2.32642e-4	0.00434425	0.00355641
chr14	92162140	92162239	14458442	0	+	0.292929	(0.29,0.33]	chr14	1128971	5	UTR3	UTR3:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.06067	2.5963950000000002	3.13212	0.0384863	0.00551048	0.149227	0.0414592
chr17	42839111	42839166	16230299	0	+	0.290909	(0.29,0.33]	chr17	1313589	1	CDS	CDS:UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000589469.5:ENST00000543428.5:ENST00000293362.7:ENST00000592169.2:ENST00000593111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	2.06067	2.5963950000000002	3.13212	0.0384863	0.00551048	0.149227	0.0414592
chr5	55415969	55416050	5974088	0	+	0.320988	(0.29,0.33]	chr5	468397	1	CDS	CDS:UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000518955.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	2.06067	2.5963950000000002	3.13212	0.0384863	0.00551048	0.149227	0.0414592
chr10	60794072	60794169	11063690	0	+	0.216495	[0,0.29]	chr10	841962	2	UTR3	UTR3:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding	34	138	2	2.17333	2.596295	3.01926	2.38796e-4	1.25245e-7	0.00393328	6.77766e-6
chr6	32185702	32185799	7664817	0	-	0.453608	(0.42,0.455]	chr6	586181	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PBX2:XXbac-BPG300A18.13	ENSG00000204304.12:ENSG00000273333.2	ENST00000375050.6:ENST00000559458.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	43	2	2.50714	2.596295	2.68545	0.00135767	0.00122903	0.0146849	0.0130835
chr2	54972961	54973058	2666103	0	-	0.371134	(0.36,0.39]	chr2	238467	9	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000491592.1:ENST00000485749.1:ENST00000402434.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	195	2	2.44172	2.5962	2.75068	4.93549e-5	4.30962e-7	0.00112273	1.95063e-5
chr10	97432708	97432800	11212392	0	+	0.402174	(0.39,0.42]	chr10	852981	3	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.44959	2.59601	2.74243	0.00369167	0.00167534	0.030936	0.0164993
chr22	41884926	41885011	18383721	0	+	0.635294	(0.59,1]	chr22	1565041	2	CDS	CDS:UTR3:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	2.11074	2.595885	3.08103	0.0305	2.20237e-4	0.130204	0.0034006
chr19	12928341	12928436	17472111	0	-	0.568421	(0.53,0.59]	chr19	1463349	1	CDS	CDS:UTR3:EXON_MRNA	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5:ENST00000593021.1:ENST00000592662.5:ENST00000586280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	2.29749	2.59588	2.89427	0.00181945	3.98634e-4	0.0183913	0.00546791
chr15	89201477	89201574	15434478	0	-	0.360825	(0.36,0.39]	chr15	1220451	5	EXON_PSEUDO	EXON_PSEUDO	RP11-326A19.5	ENSG00000259948.2	ENST00000563131.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	33	2	2.38564	2.59584	2.80604	0.0476159	2.42014e-4	0.17993	0.00366309
chr17	32362913	32362984	16200571	0	+	0.535211	(0.53,0.59]	chr17	1308169	1	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	2.28509	2.5957049999999997	2.90632	0.0019345	3.72925e-4	0.0184806	0.00559101
chrX	119469854	119469952	18841516	0	+	0.55102	(0.53,0.59]	chrX	1605559	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9:ENST00000460013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	116	2	2.50329	2.5957049999999997	2.68812	1.34856e-4	3.91446e-5	0.00249892	8.45259e-4
chr17	74209186	74209217	16348716	0	+	0.354839	(0.33,0.36]	chr17	1326163	1	CDS	CDS:EXON_MRNA	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1	protein_coding	protein_coding	protein_coding	protein_coding	43	190	2	2.43665	2.5956650000000003	2.75468	4.53973e-6	2.46831e-6	1.42816e-4	9.43045e-5
chr10	59792717	59792816	11517226	0	-	0.424242	(0.42,0.455]	chr10	877718	41	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	40	2	2.47379	2.595575	2.71736	0.00996858	3.91972e-4	0.0621728	0.00539186
chr4	169687657	169687757	5217860	0	+	0.4	(0.39,0.42]	chr4	420881	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000511092.5:ENST00000347613.8:ENST00000360642.7:ENST00000512813.5:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.49701	2.5953749999999998	2.69374	0.0339607	0.00386013	0.141431	0.0310764
chr19	10287755	10287855	17224670	0	+	0.64	(0.59,1]	chr19	1418518	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	4	55	2	2.55837	2.595255	2.63214	0.00709491	0.005622	0.0479177	0.0421873
chr16	70563875	70563962	15730086	0	+	0.482759	(0.455,0.49]	chr16	1252987	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000568539.1:ENST00000563739.5:ENST00000562722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	48	2	2.35761	2.5952200000000003	2.83283	0.00138275	6.06795e-4	0.0143168	0.00817698
chr16	3189648	3189748	15497114	0	+	0.54	(0.53,0.59]	chr16	1228495	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AJ003147.9	ENSG00000262668.2	ENST00000652759.1:ENST00000576468.1	lncRNA	lncRNA	lncRNA	lncRNA	83	569	2	2.41445	2.59512	2.77579	2.86314e-6	2.37284e-7	1.0727e-4	1.17275e-5
chr1	143956086	143956186	1261713	0	-	0.47	(0.455,0.49]	chr1	123681	9	UTR3	UTR3:EXON_MRNA	FAM72C	ENSG00000263513.6	ENST00000584486.6:ENST00000369175.4	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	2.29155	2.595045	2.89854	0.00354718	4.22484e-4	0.0291792	0.00613535
chr7	72942331	72942431	8330198	0	+	0.62	(0.59,1]	chr7	634054	6	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	2.16581	2.59503	3.02425	0.00657102	3.23511e-4	0.0458787	0.00498177
chr13	46158907	46158989	14009948	0	-	0.439024	(0.42,0.455]	chr13	1098577	2	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000416500.5:ENST00000442275.1	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.93033	2.594525	3.25872	0.0505055	4.85053e-5	0.181202	0.00110436
chr17	76564087	76564184	16359190	0	+	0.360825	(0.36,0.39]	chr17	1328581	11	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	42	195	2	2.57761	2.5945099999999996	2.61141	4.90776e-6	1.45644e-6	1.52632e-4	6.03234e-5
chr1	32174374	32174474	127052	0	+	0.4	(0.39,0.42]	chr1	15636	36	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	36	2	2.56748	2.594395	2.62131	0.00609677	9.10614e-4	0.0439136	0.0103521
chr7	6461581	6461680	8664665	0	-	0.383838	(0.36,0.39]	chr7	662823	6	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	2.42114	2.594315	2.76749	0.00564641	0.00287858	0.0422191	0.0247002
chr4	67677610	67677666	5453280	0	-	0.375	(0.36,0.39]	chr4	436178	1	CDS	CDS:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000420827.2:ENST00000429659.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	1.72333	2.59415	3.46497	0.0514027	0.00105709	0.18321	0.0123035
chr19	41344746	41344805	17568630	0	-	0.559322	(0.53,0.59]	chr19	1476899	1	CDS	CDS:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6:ENST00000600196.2:ENST00000677934.1:ENST00000597453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	59	2	2.33159	2.594105	2.85662	0.00153017	4.88685e-4	0.0155189	0.00686067
chr2	189923235	189923335	2274544	0	+	0.48	(0.455,0.49]	chr2	206587	431	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000478197.1:ENST00000495546.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	41	2	1.80405	2.594075	3.3841	0.017721400000000002	1.17485e-4	0.0918323	0.00206023
chr19	39384926	39385002	17325905	0	+	0.578947	(0.53,0.59]	chr19	1434773	1	INTRON	INTRON	SAMD4B	ENSG00000179134.15	ENST00000596368.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	1.97928	2.59401	3.20874	0.0218546	0.00278422	0.104785	0.0241009
chr11	126268704	126268804	12645211	0	-	0.56	(0.53,0.59]	chr11	981874	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000528744.5:ENST00000530680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	49	2	2.15403	2.59394	3.03385	0.0118065	1.81515e-4	0.0686664	0.00293332
chr3	152300094	152300193	3816859	0	+	0.353535	(0.33,0.36]	chr3	325627	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	120	2	2.37399	2.593925	2.81386	5.97232e-5	2.76204e-6	0.00130766	9.47025e-5
chr14	100727068	100727135	14489526	0	+	0.641791	(0.59,1]	chr14	1132100	1	CDS_START	CDS_START:CDS:EXON_MRNA	DLK1	ENSG00000185559.16	ENST00000392848.9:ENST00000341267.9:ENST00000555747.1:ENST00000331224.10:ENST00000556051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	79	2	2.4986	2.5939	2.6892	0.00349906	0.00147019	0.0296494	0.0149767
chr1	65433224	65433323	251623	0	+	0.454545	(0.42,0.455]	chr1	28780	14	UTR3	UTR3:EXON_MRNA:INTRON	LEPR:LEPROT	ENSG00000116678.20:ENSG00000213625.9	ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.63927	2.593825	3.54838	0.0455517	5.9986e-4	0.175554	0.0075062
chr8	26360991	26361091	9238246	0	+	0.33	(0.29,0.33]	chr8	707515	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000524169.5:ENST00000518397.5:ENST00000522535.5:ENST00000665949.1:ENST00000660435.1:ENST00000523925.5:ENST00000315985.7:ENST00000521557.5:ENST00000519439.5:ENST00000523964.5:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000518215.5:ENST00000665751.1:ENST00000518890.5:ENST00000517754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	2.38576	2.593685	2.80161	0.0439193	0.00415667	0.163572	0.0325842
chr3	128480620	128480719	4441116	0	-	0.373737	(0.36,0.39]	chr3	368923	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GATA2	ENSG00000179348.12	ENST00000341105.7:ENST00000430265.6:ENST00000489987.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	1.85489	2.59365	3.33241	0.0350721	0.00193631	0.141601	0.0192272
chr1	160292551	160292620	1328697	0	-	0.507246	(0.49,0.53]	chr1	135981	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.26641	2.593615	2.92082	0.0190546	0.00827037	0.093872	0.0534766
chr17	81869329	81869406	16709710	0	-	0.519481	(0.49,0.53]	chr17	1377743	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGDIA	ENSG00000141522.12	ENST00000269321.12:ENST00000400721.8:ENST00000584461.5:ENST00000541078.6:ENST00000580685.5:ENST00000579121.5:ENST00000581876.5:ENST00000583868.5:ENST00000582984.5:ENST00000580033.5:ENST00000583791.1:ENST00000578351.1:ENST00000583111.5:ENST00000584397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.26641	2.593615	2.92082	0.0190546	0.00827037	0.093872	0.0534766
chr19	55673968	55674068	17397355	0	+	0.57	(0.53,0.59]	chr19	1448949	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	2.56002	2.59335	2.62668	0.00634904	0.00157636	0.0446708	0.015761
chr12	56670274	56670364	13352273	0	-	0.366667	(0.36,0.39]	chr12	1051797	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	144	2	2.33247	2.5932899999999997	2.85411	7.09063e-5	1.08913e-6	0.00149851	4.3062e-5
chr15	34227738	34227792	14860486	0	+	0.407407	(0.39,0.42]	chr15	1166998	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	EMC4	ENSG00000128463.13	ENST00000249209.8:ENST00000267750.9:ENST00000560911.5:ENST00000561372.1:ENST00000559078.5:ENST00000558205.5:ENST00000557879.1:ENST00000558102.1:ENST00000559421.1:ENST00000558810.1:ENST00000561246.1:ENST00000560947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.99911	2.593245	3.18738	0.0477207	7.15306e-5	0.17993	0.00137393
chr6	17675228	17675298	7619490	0	-	0.485714	(0.455,0.49]	chr6	580614	1	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	2.09123	2.59276	3.09429	0.00905243	3.75881e-5	0.0574173	8.15231e-4
chr16	46672333	46672402	15927245	0	-	0.318841	(0.29,0.33]	chr16	1277431	2	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	2.45373	2.5927550000000004	2.73178	0.0156405	0.00360855	0.084273700000000007	0.0296421
chr2	65087913	65088009	2708066	0	-	0.302083	(0.29,0.33]	chr2	241346	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	2.45373	2.5927550000000004	2.73178	0.0156405	0.00360855	0.084273700000000007	0.0296421
chr7	116506159	116506258	8475390	0	+	0.292929	(0.29,0.33]	chr7	647296	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAV2	ENSG00000105971.15	ENST00000222693.5:ENST00000343213.2:ENST00000495841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	35	2	2.57219	2.592535	2.61288	0.00138819	9.93325e-4	0.0149724	0.0111014
chr20	5100029	5100124	17887639	0	-	0.368421	(0.36,0.39]	chr20	1514035	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	54	2	2.2621000000000002	2.592035	2.92197	9.03509e-4	1.60658e-4	0.0102771	0.00287058
chr3	33868513	33868613	3399923	0	+	0.4	(0.39,0.42]	chr3	295769	21	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	53	2	2.26834	2.59171	2.91508	8.525e-4	4.41174e-4	0.00994988	0.0062930699999999996
chr21	8445657	8445757	18042001	0	+	0.5	(0.49,0.53]	chr21	1530902	58	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	3166	18710	2	2.51224	2.59169	2.67114	1.29377e-7	2.02909e-8	6.97639e-6	1.55645e-6
chr8	123207881	123207977	9588607	0	+	0.5	(0.49,0.53]	chr8	727199	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	15	57	2	1.34944	2.591315	3.83319	0.0199461	1.34601e-4	0.0984041	0.00249552
chr6	159684853	159684943	8048255	0	-	0.477778	(0.455,0.49]	chr6	615191	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000535459.5:ENST00000541573.5:ENST00000540491.1:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	39	2	1.68956	2.59131	3.49306	0.0381365	6.07633e-5	0.155455	0.00121305
chr16	154300	154400	15480578	0	+	0.67	(0.59,1]	chr16	1224152	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	139	1672	2	2.37128	2.59119	2.8111	1.68813e-5	1.23774e-6	4.26874e-4	5.28262e-5
chr7	128770446	128770545	8521861	0	+	0.515152	(0.49,0.53]	chr7	650198	14	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	13	82	2	2.54958	2.591165	2.63275	2.97496e-4	9.6395e-5	0.00470429	0.00175267
chr2	99194824	99194924	1952285	0	+	0.27	[0,0.29]	chr2	185449	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-111H13.1:RP11-38C17.1:MRPL30	ENSG00000241962.9:ENSG00000273155.1:ENSG00000185414.20	ENST00000424491.5:ENST00000410042.1:ENST00000473743.5:ENST00000338148.8:ENST00000409145.5:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	27	2	2.56591	2.591095	2.61628	0.0101434	0.00106789	0.0626311	0.0118238
chr1	26257596	26257663	108682	0	+	0.537313	(0.53,0.59]	chr1	12915	1	CDS	CDS:EXON_MRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	1.88327	2.59101	3.29875	0.0298124	0.00191422	0.129773	0.018324
chr17	18208688	18208785	16150145	0	+	0.340206	(0.33,0.36]	chr17	1301927	4	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000541285.1:ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.4164	2.59095	2.7655	0.0175892	0.011989	0.0918323	0.0700473
chr7	139045205	139045304	9102033	0	-	0.353535	(0.33,0.36]	chr7	694516	18	UTR3	UTR3:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.4164	2.59095	2.7655	0.0175892	0.011989	0.0918323	0.0700473
chr9	122819984	122820084	10841283	0	-	0.36	(0.33,0.36]	chr9	821333	20	UTR3	UTR3:EXON_MRNA:INTRON	PDCL	ENSG00000136940.14	ENST00000436632.5:ENST00000259467.9	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.4164	2.59095	2.7655	0.0175892	0.011989	0.0918323	0.0700473
chr1	23310980	23311066	894713	0	-	0.546512	(0.53,0.59]	chr1	92820	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	115	2	2.00224	2.590945	3.17965	0.00247412	1.73234e-6	0.0231065	6.35589e-5
chr10	70202994	70203074	11560608	0	-	0.2875	[0,0.29]	chr10	879625	3	UTR3	UTR3:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8	protein_coding	protein_coding	protein_coding	protein_coding	27	103	2	2.40834	2.590465	2.77259	3.1156e-5	1.96538e-5	7.66507e-4	4.78898e-4
chr12	120496421	120496521	13116586	0	+	0.53	(0.49,0.53]	chr12	1023812	1	CDS_START	CDS_START:CDS:EXON_MRNA	DYNLL1	ENSG00000088986.11	ENST00000392509.6:ENST00000549649.5:ENST00000548342.5:ENST00000548214.1:ENST00000392508.2:ENST00000550178.1:ENST00000242577.11:ENST00000552870.1:ENST00000549989.1:ENST00000550845.5	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	1.9676	2.590385	3.21317	0.00876974	3.08783e-4	0.056115	0.00445935
chr3	155916018	155916105	3824435	0	+	0.402299	(0.39,0.42]	chr3	326195	1	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	15	59	2	1.46261	2.59027	3.71793	0.0136973	1.58821e-5	0.0752082	4.4403e-4
chr1	37494003	37494098	946794	0	-	0.494737	(0.49,0.53]	chr1	99428	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8:ENST00000487792.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.45798	2.59025	2.72252	0.0161474	0.00353238	0.0860154	0.029076
chr1	155660045	155660141	1310547	0	-	0.520833	(0.49,0.53]	chr1	132517	4	CDS	CDS:UTR3:EXON_MRNA:EXON_PSEUDO	RP11-29H23.5:YY1AP1	ENSG00000246203.2:ENSG00000163374.20	ENST00000500626.2:ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:unprocessed_pseudogene	4	28	2	2.45798	2.59025	2.72252	0.0161474	0.00353238	0.0860154	0.029076
chr1	159918799	159918899	1326675	0	-	0.62	(0.59,1]	chr1	135580	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	204	2	2.41158	2.59004	2.7685	1.98016e-4	1.42944e-4	0.00314048	0.00262111
chr17	16439326	16439415	16142064	0	+	0.685393	(0.59,1]	chr17	1300748	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000584141.5:ENST00000658116.1:ENST00000492250.5:ENST00000654356.1:ENST00000578757.5:ENST00000475953.5:ENST00000578380.6:ENST00000470491.6:ENST00000581913.5:ENST00000660462.1:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	38	497	2	2.17525	2.589945	3.00464	4.19997e-4	8.82448e-7	0.00611538	3.59284e-5
chr1	156036779	156036878	1313210	0	-	0.484848	(0.455,0.49]	chr1	133124	16	UTR3	UTR3:EXON_MRNA	UBQLN4	ENSG00000160803.8	ENST00000368309.4	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.81931	2.589905	3.3605	0.0235519	0.00147278	0.108737	0.0157578
chr19	13099318	13099418	17472254	0	-	0.74	(0.59,1]	chr19	1463396	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LYL1	ENSG00000104903.5	ENST00000264824.5	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.19052	2.58982	2.9891200000000002	0.0237927	0.00823979	0.109413	0.0540283
chr5	163519056	163519155	6343962	0	+	0.313131	(0.29,0.33]	chr5	494143	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAT2B	ENSG00000038274.17	ENST00000280969.9:ENST00000518095.5:ENST00000321757.11:ENST00000523606.1:ENST00000521838.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	15	2	2.24226	2.5898149999999998	2.93737	0.0306054	0.00826984	0.130226	0.0534766
chr1	19093312	19093399	875778	0	-	0.494253	(0.49,0.53]	chr1	89926	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1:ENST00000492606.1:ENST00000467272.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	30	2	1.65324	2.589805	3.52637	0.0407792	6.68602e-4	0.163285	0.00820018
chr5	179730042	179730142	6414474	0	+	0.36	(0.33,0.36]	chr5	499211	15	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	76	2	1.87807	2.589795	3.30152	0.00426528	1.1167e-6	0.0333884	4.4003e-5
chr16	69693342	69693441	15725288	0	+	0.434343	(0.42,0.455]	chr16	1252127	17	CDS	CDS:UTR3:EXON_MRNA:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	50	2	1.79995	2.589785	3.37962	0.00677326	1.2947e-4	0.0468196	0.00242147
chr6	35834328	35834426	7677923	0	-	0.387755	(0.36,0.39]	chr6	588535	15	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	29	2	2.48922	2.589785	2.69035	0.0110399	0.00123789	0.0652374	0.013161
chr8	17967074	17967170	9214809	0	+	0.375	(0.36,0.39]	chr8	704085	2	CDS	CDS:EXON_MRNA	PCM1	ENSG00000078674.18	ENST00000325083.12:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.48922	2.589785	2.69035	0.0110399	0.00123789	0.0652374	0.013161
chr6	17649231	17649300	7619221	0	-	0.405797	(0.39,0.42]	chr6	580570	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.48556	2.58965	2.69374	0.00386013	0.00384158	0.0320512	0.0310764
chr17	81511533	81511626	16707877	0	-	0.591398	(0.59,1]	chr17	1377337	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	246	2	2.32425	2.58962	2.85499	3.68538e-4	2.25444e-5	0.00553438	5.3659e-4
chr2	110650545	110650624	2838046	0	-	0.493671	(0.49,0.53]	chr2	253312	1	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5:ENST00000490632.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	44	2	1.73918	2.5895449999999998	3.43991	0.0213952	8.40266e-5	0.102813	0.00158427
chr6	31785245	31785327	7662473	0	-	0.536585	(0.53,0.59]	chr6	585310	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5:ENST00000489979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	50	2	1.79365	2.589515	3.38538	0.0165609	1.18366e-4	0.087473	0.00207204
chr12	120566824	120566902	13116970	0	+	0.474359	(0.455,0.49]	chr12	1023913	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000413266.6:ENST00000546262.6:ENST00000540046.5:ENST00000545419.5:ENST00000366112.6:ENST00000535470.5:ENST00000538254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.18128	2.58899	2.9967	0.0111696	0.00650423	0.0665375	0.0454205
chr2	237098132	237098229	2451733	0	+	0.484536	(0.455,0.49]	chr2	221180	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COPS8	ENSG00000198612.11	ENST00000392008.6:ENST00000354371.7:ENST00000447464.1:ENST00000465362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.18128	2.58899	2.9967	0.0111696	0.00650423	0.0665375	0.0454205
chr1	206649863	206649963	682566	0	+	0.41	(0.39,0.42]	chr1	68980	10	UTR3	UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000489878.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.66154	2.58895	3.51636	0.0452475	6.99837e-4	0.174743	0.00846751
chrX	124071235	124071323	18852278	0	+	0.386364	(0.36,0.39]	chrX	1606272	2	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	2.54205	2.58863	2.63521	0.00633242	0.00253891	0.0446708	0.0227257
chr1	228457524	228457620	1539743	0	-	0.65625	(0.59,1]	chr1	154185	1	CDS	CDS:EXON_MRNA	H2AW	ENSG00000181218.5	ENST00000366695.3	protein_coding	protein_coding	protein_coding	protein_coding	7	92	2	2.42199	2.588555	2.75512	0.00475078	4.62727e-4	0.0367332	0.00613432
chr5	168552283	168552383	6968940	0	-	0.41	(0.39,0.42]	chr5	532791	39	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	PANK3:SLC2A3P1	ENSG00000120137.7:ENSG00000253861.1	ENST00000239231.7:ENST00000519666.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	9	52	2	2.5823	2.5885350000000003	2.59477	0.00246531	1.97342e-4	0.0230262	0.00313008
chr1	87104469	87104532	341411	0	+	0.380952	(0.36,0.39]	chr1	33630	1	CDS	CDS:EXON_MRNA:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.336	2.588445	2.84089	0.0154226	0.0128123	0.0834369	0.0719798
chr1	153646117	153646211	478446	0	+	0.361702	(0.36,0.39]	chr1	49171	10	UTR3	UTR3:EXON_MRNA	CHTOP	ENSG00000160679.13	ENST00000368690.7:ENST00000614256.4:ENST00000368694.8:ENST00000403433.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.336	2.588445	2.84089	0.0154226	0.0128123	0.0834369	0.0719798
chr22	30977527	30977625	18344862	0	+	0.387755	(0.36,0.39]	chr22	1559168	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.336	2.588445	2.84089	0.0154226	0.0128123	0.0834369	0.0719798
chr5	72208483	72208581	6027882	0	+	0.5	(0.49,0.53]	chr5	472574	34	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.9035	2.58839	3.27328	0.0295204	2.21441e-4	0.129773	0.00341572
chr14	52004193	52004242	14284132	0	+	0.408163	(0.39,0.42]	chr14	1116793	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RTRAF	ENSG00000087302.9	ENST00000261700.8:ENST00000556760.5:ENST00000553362.1:ENST00000553479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.18155	2.58831	2.99507	0.0283931	0.00637824	0.127654	0.0449937
chr2	127798902	127798998	2868991	0	-	0.416667	(0.39,0.42]	chr2	256462	1	EXON_SMALL	EXON_SMALL:INTRON	WDR33:RNY4P7	ENSG00000136709.12:ENSG00000201470.1	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5:ENST00000409658.7:ENST00000408998.1:ENST00000364600.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	3	19	2	2.18155	2.58831	2.99507	0.0283931	0.00637824	0.127654	0.0449937
chr6	167962332	167962432	7550262	0	+	0.4	(0.39,0.42]	chr6	576348	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000476946.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.18155	2.58831	2.99507	0.0283931	0.00637824	0.127654	0.0449937
chr5	96767906	96767999	6117288	0	+	0.505376	(0.49,0.53]	chr5	478593	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAST	ENSG00000153113.24	ENST00000338252.7:ENST00000508830.5:ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000674984.1:ENST00000675663.1:ENST00000508608.6:ENST00000675267.1:ENST00000341926.7:ENST00000675266.1:ENST00000675614.1:ENST00000395813.5:ENST00000511049.5:ENST00000675858.1:ENST00000309190.9:ENST00000674587.1:ENST00000504465.5:ENST00000511782.5:ENST00000509903.5:ENST00000675033.1:ENST00000675479.1:ENST00000510756.6:ENST00000348386.7:ENST00000510500.5:ENST00000437034.6:ENST00000508579.5:ENST00000515663.5:ENST00000484552.6:ENST00000325674.11:ENST00000675275.1:ENST00000675185.1:ENST00000675734.1:ENST00000510098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	41	2	2.38935	2.5882899999999998	2.78723	0.00488689	7.16432e-4	0.0376157	0.00859467
chr17	75042180	75042277	16682069	0	-	0.515464	(0.49,0.53]	chr17	1372890	1	CDS	CDS:EXON_MRNA	ATP5PD	ENSG00000167863.12	ENST00000344546.8:ENST00000301587.9:ENST00000538432.2:ENST00000582341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	46	2	2.30147	2.5882750000000003	2.87508	0.0033367	4.55699e-4	0.0278556	0.00645757
chr5	103202232	103202331	6133282	0	+	0.30303	(0.29,0.33]	chr5	479642	7	UTR3	UTR3:EXON_MRNA	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.25579	2.58822	2.92065	0.0117842	0.00934624	0.0686664	0.0589275
chr5	40834255	40834265	6552958	0	-	0.4	(0.39,0.42]	chr5	507737	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000509877.5:ENST00000507642.5:ENST00000504562.1:ENST00000508493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	197	2	2.05241	2.5882050000000003	3.124	3.38388e-4	4.50656e-8	0.00514861	2.81313e-6
chr6	31642208	31642305	7661405	0	-	0.628866	(0.59,1]	chr6	584824	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000470875.5:ENST00000437771.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	78	2	2.58269	2.588165	2.59364	0.0067313	0.0010223	0.0461258	0.0113689
chr10	46005557	46005651	11470919	0	-	0.414894	(0.39,0.42]	chr10	874825	6	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.98041	2.588145	3.19588	0.00554472	0.00321212	0.0405292	0.0280721
chr7	158732454	158732551	9159292	0	-	0.391753	(0.39,0.42]	chr7	699685	16	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	1.94226	2.5881	3.23394	0.01151	5.30858e-5	0.0679423	0.00108035
chr9	112686906	112687006	10804972	0	-	0.24	[0,0.29]	chr9	818555	31	UTR3	UTR3:EXON_MRNA	INIP	ENSG00000148153.14	ENST00000374242.9	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.3458	2.5881	2.8304	0.0121878	0.0116272	0.0701019	0.0685835
chr1	67412506	67412606	1079131	0	-	0.32	(0.29,0.33]	chr1	110137	48	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	21	86	2	1.83807	2.5879149999999997	3.33776	0.00296211	3.61119e-7	0.0263627	1.6707e-5
chr20	35654727	35654826	17955006	0	-	0.545455	(0.53,0.59]	chr20	1521109	13	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	73	2	2.19041	2.58786	2.98531	0.00191981	7.82534e-5	0.019137	0.00148756
chr17	78117868	78117935	16693091	0	-	0.701493	(0.59,1]	chr17	1375211	2	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.17	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	55	2	2.5215	2.587825	2.65415	0.032241	0.00171847	0.135671	0.0168227
chr2	74155088	74155187	2740221	0	-	0.373737	(0.36,0.39]	chr2	243880	27	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.42114	2.587805	2.75447	0.00564641	3.28568e-4	0.0422191	0.00467693
chr11	2954586	2954646	12233499	0	-	0.366667	(0.36,0.39]	chr11	944868	2	CDS	CDS:EXON_MRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000492594.6:ENST00000492685.5:ENST00000528363.5:ENST00000483643.7:ENST00000528261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	27	2	2.28639	2.5877850000000002	2.88918	0.00768469	0.00212816	0.050396	0.0206577
chr15	66379652	66379748	15352776	0	-	0.447917	(0.42,0.455]	chr15	1212508	5	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	TIPIN:RPL9P25	ENSG00000075131.10:ENSG00000240821.1	ENST00000562124.5:ENST00000568216.5:ENST00000570251.1:ENST00000561773.1:ENST00000489563.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	11	59	2	2.02584	2.587705	3.14957	0.00222605	9.82296e-5	0.0205981	0.00193927
chr1	229324153	229324251	1541551	0	-	0.357143	(0.33,0.36]	chr1	154303	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	45	2	1.96645	2.58766	3.20887	0.0197415	1.76058e-5	0.095966	4.39493e-4
chr2	113931305	113931396	2006850	0	+	0.406593	(0.39,0.42]	chr2	190764	1	CDS	CDS:UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	55	2	2.16078	2.587605	3.01443	0.00370921	2.8712e-5	0.0302984	7.20639e-4
chr10	102162551	102162645	11226685	0	+	0.265957	[0,0.29]	chr10	854877	4	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	2.55853	2.5874050000000004	2.61628	0.0101434	0.007538	0.0626311	0.0497903
chr6	13708742	13708841	7605946	0	-	0.494949	(0.49,0.53]	chr6	580078	115	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.56183	2.587365	2.6129	0.0261296	0.0052746	0.118976	0.0389109
chr1	179865660	179865757	1394850	0	-	0.484536	(0.455,0.49]	chr1	141318	6	UTR5	UTR5:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.50904	2.5873350000000004	2.66563	0.0310515	0.0043075	0.131262	0.0334284
chr10	119173736	119173804	11718004	0	-	0.455882	(0.455,0.49]	chr10	893969	1	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000463322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.50904	2.5873350000000004	2.66563	0.0310515	0.0043075	0.131262	0.0334284
chr3	152445281	152445367	3818321	0	+	0.465116	(0.455,0.49]	chr3	325666	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.50904	2.5873350000000004	2.66563	0.0310515	0.0043075	0.131262	0.0334284
chr7	135672752	135672806	8553468	0	+	0.444444	(0.42,0.455]	chr7	652930	1	CDS	CDS:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000515197.2:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	30	2	2.36247	2.58719	2.81191	0.0462889	6.31824e-4	0.176878	0.0078507
chr12	120783673	120783752	13581930	0	-	0.443038	(0.42,0.455]	chr12	1069245	1	CDS	CDS:EXON_MRNA	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5:ENST00000543181.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.36247	2.58711	2.81175	0.0462889	0.00227654	0.176878	0.0209546
chr17	49424548	49424641	16581264	0	-	0.430108	(0.42,0.455]	chr17	1362397	4	EXON_PSEUDO	EXON_PSEUDO	EIF4EP2	ENSG00000229944.3	ENST00000422816.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	23	2	2.36247	2.58711	2.81175	0.0462889	0.00227654	0.176878	0.0209546
chr1	84646058	84646156	1131612	0	-	0.459184	(0.455,0.49]	chr1	112678	25	UTR3	UTR3:EXON_MRNA	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	1.96949	2.587085	3.20468	0.00919557	6.38295e-5	0.0582809	0.00125289
chr9	34086484	34086582	10634745	0	-	0.295918	(0.29,0.33]	chr9	803967	2	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.24226	2.5870800000000003	2.9319	0.0306054	0.00145571	0.130226	0.0148357
chr2	126677501	126677600	2056168	0	+	0.454545	(0.42,0.455]	chr2	192601	189	INTRON	INTRON	GYPC	ENSG00000136732.16	ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.36247	2.58692	2.81137	0.0462889	0.0120386	0.176878	0.0700876
chr2	128120405	128120456	2059773	0	+	0.431373	(0.42,0.455]	chr2	193206	2	CDS	CDS:UTR3:EXON_MRNA	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.36247	2.58692	2.81137	0.0462889	0.0120386	0.176878	0.0700876
chr3	149084819	149084889	4509632	0	-	0.442857	(0.42,0.455]	chr3	374286	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000481663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.36247	2.58692	2.81137	0.0462889	0.0120386	0.176878	0.0700876
chr6	7211354	7211448	7030982	0	+	0.43617	(0.42,0.455]	chr6	538717	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.36247	2.58692	2.81137	0.0462889	0.0120386	0.176878	0.0700876
chr7	56079970	56080070	8290743	0	+	0.45	(0.42,0.455]	chr7	631576	2	UTR3	UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000395436.7:ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000395435.7:ENST00000342190.11:ENST00000436782.5:ENST00000434526.8:ENST00000423763.5:ENST00000438133.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.36247	2.58692	2.81137	0.0462889	0.0120386	0.176878	0.0700876
chr3	52707910	52708008	3479524	0	+	0.326531	(0.29,0.33]	chr3	305088	2	UTR3	UTR3:EXON_MRNA	SPCS1	ENSG00000114902.14	ENST00000423431.5:ENST00000233025.11:ENST00000619898.5:ENST00000474945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	30	2	2.17855	2.586905	2.99526	0.0183673	2.55279e-4	0.0928041	0.00383691
chr6	37171399	37171491	7136263	0	+	0.597826	(0.59,1]	chr6	549937	4	CDS	CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	27	338	2	2.47307	2.5868599999999997	2.70065	4.62998e-4	9.04576e-6	0.00655735	2.53669e-4
chr6	136259415	136259515	7982291	0	-	0.35	(0.33,0.36]	chr6	610291	29	UTR3	UTR3:EXON_MRNA:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000533422.5:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	2.47163	2.58674	2.70185	0.0129725	0.00121183	0.0724783	0.0129756
chr1	112667073	112667145	411441	0	+	0.361111	(0.36,0.39]	chr1	40528	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1:ENST00000466066.1:ENST00000476820.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	47	2	2.55738	2.586695	2.61601	0.0013225	3.36245e-4	0.0144203	0.00474861
chr3	10305032	10305094	4032330	0	-	0.709677	(0.59,1]	chr3	338587	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000476597.1:ENST00000490283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.11074	2.58666	3.06258	0.0305	0.00616167	0.130204	0.0438642
chr16	30069443	30069498	15628429	0	+	0.636364	(0.59,1]	chr16	1239792	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000562679.5:ENST00000564688.1:ENST00000566146.1:ENST00000566130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.32384	2.58664	2.84944	0.0157639	0.0128238	0.0851539	0.0719798
chr17	5438841	5438907	16421573	0	-	0.772727	(0.59,1]	chr17	1338198	1	CDS	CDS:EXON_MRNA:INTRON	C1QBP	ENSG00000108561.8	ENST00000225698.8:ENST00000570805.1:ENST00000573406.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.32384	2.58664	2.84944	0.0157639	0.0128238	0.0851539	0.0719798
chr7	150950072	150950167	9128655	0	-	0.621053	(0.59,1]	chr7	697467	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	159	2	1.77772	2.58659	3.39546	0.0110472	5.21195e-6	0.0652709	1.60151e-4
chr5	176389397	176389497	6401940	0	+	0.6	(0.59,1]	chr5	497304	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ARL10:HIGD2A	ENSG00000175414.7:ENSG00000146066.3	ENST00000514533.1:ENST00000274787.3	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	2.11642	2.58658	3.05674	0.0144884	9.4094e-4	0.0790431	0.0106352
chr6	37331571	37331671	7137060	0	+	0.53	(0.49,0.53]	chr6	550025	5	UTR3	UTR3:EXON_MRNA	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.46958	2.586325	2.70307	0.00363585	0.00344146	0.0298137	0.0292838
chr1	47333945	47334045	182195	0	+	0.66	(0.59,1]	chr1	23807	1	CDS_START	CDS_START:CDS:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000471289.2:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	107	2	2.11947	2.5863	3.05313	0.00815168	9.44977e-5	0.0535952	0.00172285
chr8	97851666	97851762	9507217	0	+	0.4375	(0.42,0.455]	chr8	722769	3	UTR3	UTR3:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	7	47	2	2.22933	2.58629	2.94325	0.0102262	1.00632e-4	0.062872	0.00181216
chr22	20566466	20566553	18298985	0	+	0.574713	(0.53,0.59]	chr22	1553478	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000423862.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	59	2	2.43271	2.5862249999999998	2.73974	9.01417e-4	9.00802e-4	0.0109447	0.0102618
chr6	7251494	7251591	7031391	0	+	0.340206	(0.33,0.36]	chr6	538755	27	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	1.82394	2.58613	3.34832	0.0494504	2.58174e-5	0.18557	5.98209e-4
chr11	5571049	5571147	12243836	0	-	0.377551	(0.36,0.39]	chr11	946260	36	INTRON	INTRON	CTD-2643I7.5	ENSG00000239920.2	ENST00000380259.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	14	2	2.38564	2.586115	2.78659	0.0476159	0.0132982	0.17993	0.0740932
chr15	65577659	65577758	14980169	0	+	0.383838	(0.36,0.39]	chr15	1177605	14	UTR3	UTR3:EXON_MRNA	HACD3	ENSG00000074696.13	ENST00000261875.10	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.38564	2.586115	2.78659	0.0476159	0.0132982	0.17993	0.0740932
chr18	49118743	49118834	17116011	0	-	0.373626	(0.36,0.39]	chr18	1405381	1	CDS	CDS:EXON_MRNA	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.38564	2.586115	2.78659	0.0476159	0.0132982	0.17993	0.0740932
chr4	140379568	140379652	5131286	0	+	0.380952	(0.36,0.39]	chr4	415405	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SCOC	ENSG00000153130.18	ENST00000394205.7:ENST00000338517.8:ENST00000394203.7:ENST00000506322.5:ENST00000512749.5:ENST00000506597.2:ENST00000608372.6:ENST00000510586.5:ENST00000502535.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.38564	2.586115	2.78659	0.0476159	0.0132982	0.17993	0.0740932
chr5	41918586	41918686	5952040	0	+	0.39	(0.36,0.39]	chr5	466508	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.38564	2.586115	2.78659	0.0476159	0.0132982	0.17993	0.0740932
chr6	53294282	53294382	7740436	0	-	0.48	(0.455,0.49]	chr6	594396	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1:ENST00000370913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	49	2	2.47392	2.5861	2.69828	0.00157443	4.39828e-4	0.016717	0.00592532
chr11	117169175	117169273	12154357	0	+	0.316327	(0.29,0.33]	chr11	936189	16	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.49936	2.5860649999999996	2.67277	0.0255386	0.00917022	0.117089	0.0580029
chr14	55065819	55065919	14298059	0	+	0.32	(0.29,0.33]	chr14	1117553	13	UTR3	UTR3:EXON_MRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.49936	2.5860649999999996	2.67277	0.0255386	0.00917022	0.117089	0.0580029
chr14	55062882	55062971	14298026	0	+	0.617977	(0.59,1]	chr14	1117542	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000553976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	31	2	2.32455	2.5860149999999997	2.84748	0.0520547	0.0124539	0.193787	0.0712518
chr1	247156849	247156941	1603276	0	-	0.445652	(0.42,0.455]	chr1	159212	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10:ENST00000491848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.22933	2.58598	2.94263	0.0102262	0.00766873	0.062872	0.0503696
chr3	196351627	196351726	4664981	0	-	0.343434	(0.33,0.36]	chr3	385869	41	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.53712	2.58584	2.63456	0.00766322	0.00707461	0.0503696	0.0478528
chr3	48609520	48609620	4168820	0	-	0.74	(0.59,1]	chr3	349624	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000412343.5:ENST00000467690.5:ENST00000463708.1:ENST00000493806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	31	2	2.39747	2.585825	2.77418	0.0430221	0.0160729	0.161091	0.0860154
chr13	46143289	46143346	14009778	0	-	0.473684	(0.455,0.49]	chr13	1098517	1	CDS	CDS:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.53286	2.5857900000000003	2.63872	0.0282409	0.00510378	0.124386	0.0390492
chr9	34087073	34087171	10634751	0	-	0.479592	(0.455,0.49]	chr9	803967	8	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.53286	2.5857900000000003	2.63872	0.0282409	0.00510378	0.124386	0.0390492
chr1	1402182	1402256	827652	0	-	0.513514	(0.49,0.53]	chr1	82457	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MRPL20	ENSG00000242485.6	ENST00000344843.12:ENST00000487659.1:ENST00000493287.5:ENST00000492508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	17	2	2.3044	2.58575	2.8671	0.0509448	0.0100489	0.181793	0.0623334
chr1	161169659	161169720	498905	0	+	0.508197	(0.49,0.53]	chr1	53946	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPOX	ENSG00000143224.18	ENST00000352210.9:ENST00000367999.9:ENST00000497522.5:ENST00000470607.5:ENST00000651150.1:ENST00000539753.5:ENST00000652182.1:ENST00000652473.1:ENST00000544598.5:ENST00000495483.5:ENST00000535223.5:ENST00000462866.5:ENST00000652103.1:ENST00000650741.1:ENST00000652297.1:ENST00000494216.1:ENST00000462977.1:ENST00000460611.1:ENST00000537523.5:ENST00000541818.1:ENST00000652100.1:ENST00000537829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.3044	2.58575	2.8671	0.0509448	0.0100489	0.181793	0.0623334
chr11	35810060	35810159	11910497	0	+	0.494949	(0.49,0.53]	chr11	910190	38	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.3044	2.58575	2.8671	0.0509448	0.0100489	0.181793	0.0623334
chr1	15492942	15493035	866346	0	-	0.354839	(0.33,0.36]	chr1	88001	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CASP9	ENSG00000132906.18	ENST00000546424.5:ENST00000333868.10:ENST00000348549.9:ENST00000400777.7:ENST00000424908.5:ENST00000375890.8:ENST00000474305.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.47163	2.585565	2.6995	0.017838	0.0129725	0.0934844	0.0724783
chr3	143056947	143057046	3793635	0	+	0.343434	(0.33,0.36]	chr3	323977	6	UTR3	UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000473835.7:ENST00000463563.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.47163	2.585565	2.6995	0.017838	0.0129725	0.0934844	0.0724783
chr10	102110614	102110701	11668523	0	-	0.574713	(0.53,0.59]	chr10	889670	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9:ENST00000461873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	2.38191	2.58545	2.78899	0.00477439	0.00245784	0.0368489	0.0221765
chr11	47716678	47716771	12388786	0	-	0.301075	(0.29,0.33]	chr11	957284	3	UTR3	UTR3:EXON_MRNA	FNBP4	ENSG00000109920.13	ENST00000263773.10	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.22218	2.5853099999999998	2.94844	0.023782	0.00217122	0.109413	0.0208941
chr5	314790	314882	5848847	0	+	0.315217	(0.29,0.33]	chr5	459659	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTD-2546F11.1:PDCD6:PDCD6-AHRR	ENSG00000286001.1:ENSG00000249915.8:ENSG00000288622.1	ENST00000651543.1:ENST00000614778.4:ENST00000618970.4:ENST00000628729.2:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505113.6:ENST00000675395.1:ENST00000512529.6:ENST00000511482.1:ENST00000512466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	2.22218	2.5853099999999998	2.94844	0.023782	0.00217122	0.109413	0.0208941
chr1	155258889	155258954	1307312	0	-	0.507692	(0.49,0.53]	chr1	132113	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SCAMP3	ENSG00000116521.11	ENST00000478737.5:ENST00000355379.3:ENST00000302631.8:ENST00000472397.5:ENST00000490999.5:ENST00000465312.5:ENST00000462151.5:ENST00000497470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.38097	2.5852950000000003	2.78962	0.0425419	0.0129044	0.167547	0.0725185
chr12	49990737	49990792	13327184	0	-	0.490909	(0.49,0.53]	chr12	1046312	2	CDS	CDS:EXON_MRNA:INTRON	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.38097	2.5852950000000003	2.78962	0.0425419	0.0129044	0.167547	0.0725185
chr20	49034995	49035095	17811328	0	+	0.5	(0.49,0.53]	chr20	1506468	19	UTR3	UTR3:EXON_MRNA	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000679542.1:ENST00000681119.1:ENST00000680130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.38097	2.5852950000000003	2.78962	0.0425419	0.0129044	0.167547	0.0725185
chr4	150851884	150851980	5731372	0	-	0.5	(0.49,0.53]	chr4	452901	1	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.38097	2.5852950000000003	2.78962	0.0425419	0.0129044	0.167547	0.0725185
chr6	154832325	154832422	7502033	0	+	0.494845	(0.49,0.53]	chr6	572935	5	CDS	CDS:EXON_MRNA	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.38097	2.5852950000000003	2.78962	0.0425419	0.0129044	0.167547	0.0725185
chr10	46014443	46014497	11471019	0	-	0.462963	(0.455,0.49]	chr10	874860	1	CDS	CDS:UTR5:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	1.90433	2.58528	3.26623	0.0185466	2.31662e-4	0.0932453	0.00354314
chr7	101239660	101239732	8953864	0	-	0.583333	(0.53,0.59]	chr7	684769	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FIS1	ENSG00000214253.9	ENST00000449367.5:ENST00000223136.5:ENST00000482199.5:ENST00000474120.5:ENST00000442303.1:ENST00000473527.5:ENST00000463406.5:ENST00000435848.1:ENST00000480497.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	39	2	2.29789	2.585265	2.87264	0.00674768	0.00168899	0.0468196	0.0175515
chr17	58090372	58090471	16287304	0	+	0.50505	(0.49,0.53]	chr17	1320910	12	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	1.56396	2.585245	3.60653	0.0388812	4.50981e-4	0.158355	0.00605268
chr10	119070885	119070985	11717564	0	-	0.45	(0.42,0.455]	chr10	893850	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.85887	2.5852399999999998	3.31161	0.00931874	0.00186138	0.0588091	0.018635
chr2	27241910	27241981	1691775	0	+	0.577465	(0.53,0.59]	chr2	165797	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000456311.1:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.27113	2.585145	2.89916	0.0178853	0.00890406	0.0918323	0.0565003
chr17	35671753	35671826	16206973	0	+	0.547945	(0.53,0.59]	chr17	1309113	1	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.16037	2.585135	3.0099	0.0254312	0.00600486	0.117089	0.042887
chr1	30872717	30872815	915896	0	-	0.510204	(0.49,0.53]	chr1	95914	34	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.05119	2.585055	3.11892	0.0360743	0.00398244	0.145024	0.0322851
chr17	1660697	1660762	16401379	0	-	0.507692	(0.49,0.53]	chr17	1334878	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.30264	2.58487	2.8671	0.0165402	0.0100489	0.087611	0.0623334
chr17	7656289	7656388	16106181	0	+	0.515152	(0.49,0.53]	chr17	1297135	5	UTR3	UTR3:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.30264	2.58487	2.8671	0.0165402	0.0100489	0.087611	0.0623334
chr8	41654761	41654858	9806268	0	-	0.494845	(0.49,0.53]	chr8	741510	17	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.30264	2.58487	2.8671	0.0165402	0.0100489	0.087611	0.0623334
chr12	24832722	24832792	13255886	0	-	0.471429	(0.455,0.49]	chr12	1038858	1	CDS	CDS:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.96875	2.58472	3.20069	0.0480352	0.00285821	0.180552	0.0245841
chr21	15826976	15827051	18051778	0	+	0.48	(0.455,0.49]	chr21	1531976	1	CDS	CDS:EXON_MRNA:INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000453553.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.96875	2.58472	3.20069	0.0480352	0.00285821	0.180552	0.0245841
chr16	21835692	21835789	15889952	0	-	0.57732000000000006	(0.53,0.59]	chr16	1271456	10	CDS	CDS:EXON_MRNA:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.14885	2.584695	3.02054	0.0262993	0.00577011	0.117164	0.0426551
chr12	6528944	6529039	12713535	0	+	0.536842	(0.53,0.59]	chr12	986609	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000539084.5:ENST00000315579.10:ENST00000535804.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	49	2	2.37399	2.5846850000000003	2.79538	0.0126178	2.47731e-4	0.0717599	0.00374232
chr7	135927055	135927154	9085551	0	-	0.343434	(0.33,0.36]	chr7	693646	4	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	39	175	2	2.53942	2.5846799999999996	2.62994	7.42636e-6	2.77663e-6	2.36134e-4	9.47585e-5
chrX	41345403	41345475	18669466	0	+	0.416667	(0.39,0.42]	chrX	1592222	1	CDS	CDS:UTR3:EXON_MRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	2.02403	2.58465	3.14527	0.0111868	5.33048e-4	0.0665375	0.00742114
chr6	117999068	117999163	7354839	0	+	0.505263	(0.49,0.53]	chr6	565161	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	SLC35F1:RP11-632C17__A.1	ENSG00000196376.11:ENSG00000230202.1	ENST00000360388.9:ENST00000443998.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	15	98	2	2.4432	2.5845599999999997	2.72592	8.82833e-4	1.2167e-5	0.0107603	3.23688e-4
chr11	67398270	67398358	12427587	0	-	0.693182	(0.59,1]	chr11	965287	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP1CA	ENSG00000172531.16	ENST00000537694.2:ENST00000376745.9:ENST00000312989.11:ENST00000677322.1:ENST00000677343.1:ENST00000527663.6:ENST00000679175.1:ENST00000532446.5:ENST00000532279.2:ENST00000526510.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	42	2	2.55837	2.584555	2.61074	0.025486	0.00709491	0.117089	0.0479177
chr6	26171161	26171255	7101425	0	+	0.308511	(0.29,0.33]	chr6	542819	3	UTR3	UTR3:EXON_MRNA	H2BC5	ENSG00000158373.8	ENST00000289316.2	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.36742	2.584515	2.80161	0.0147368	0.00415667	0.0801529	0.0325842
chr8	63210500	63210600	9370718	0	+	0.31	(0.29,0.33]	chr8	715902	9	UTR3	UTR3:EXON_MRNA	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000517371.5:ENST00000615676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	2.36742	2.584515	2.80161	0.0147368	0.00415667	0.0801529	0.0325842
chr19	16646249	16646347	17492555	0	-	0.336735	(0.33,0.36]	chr19	1466610	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTC-429P9.4:SMIM7	ENSG00000268790.5:ENSG00000214046.9	ENST00000593962.5:ENST00000601636.5:ENST00000595505.5:ENST00000593991.5:ENST00000593459.5:ENST00000594509.5:ENST00000600705.1:ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	22	2	1.69981	2.584445	3.46908	0.0370662	0.00114872	0.145667	0.0130528
chr20	32850207	32850306	17755875	0	+	0.353535	(0.33,0.36]	chr20	1498956	16	UTR3	UTR3:EXON_MRNA	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.69981	2.584445	3.46908	0.0370662	0.00114872	0.145667	0.0130528
chr8	100721483	100721583	9976141	0	-	0.66	(0.59,1]	chr8	752717	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	46	555	2	2.56251	2.5844050000000003	2.6063	3.43138e-5	9.63322e-6	8.37726e-4	2.67712e-4
chr4	118279619	118279719	5071414	0	+	0.45	(0.42,0.455]	chr4	411693	4	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG8	ENSG00000269893.8	ENST00000654083.1:ENST00000602520.5:ENST00000667980.1:ENST00000665363.1:ENST00000602414.6:ENST00000602819.6:ENST00000602483.5:ENST00000652022.1:ENST00000602573.1	lncRNA	lncRNA	lncRNA	lncRNA	6	37	2	1.87159	2.584395	3.2972	0.0214479	1.93851e-4	0.102998	0.00307904
chr11	3702634	3702720	12237998	0	-	0.5	(0.49,0.53]	chr11	945555	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	2.38097	2.5841000000000003	2.78723	0.0425419	7.16432e-4	0.167547	0.00859467
chr5	10391636	10391731	5875085	0	+	0.578947	(0.53,0.59]	chr5	461943	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	137	2	2.35299	2.583915	2.81484	8.09771e-4	3.53409e-6	0.0100672	1.15426e-4
chrX	110198026	110198125	19169141	0	-	0.363636	(0.36,0.39]	chrX	1630483	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AMMECR1	ENSG00000101935.11	ENST00000262844.10:ENST00000372059.6:ENST00000372057.1:ENST00000680410.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	2.38112	2.583855	2.78659	0.0132982	0.0031815	0.0740932	0.0279343
chr19	35169565	35169615	17303897	0	+	0.6	(0.59,1]	chr19	1430637	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FXYD5	ENSG00000089327.15	ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	67	2	2.47837	2.5837849999999998	2.6892	0.00970721	0.00147019	0.0608296	0.0149767
chr12	31980877	31980955	12816014	0	+	0.358974	(0.33,0.36]	chr12	995184	1	UTR5	UTR5:EXON_MRNA:INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.51887	2.58369	2.64851	0.0358636	0.00492353	0.147298	0.0366648
chr14	64415360	64415460	14343760	0	+	0.36	(0.33,0.36]	chr14	1121263	1	CDS_START	CDS_START:CDS:EXON_MRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000554739.5:ENST00000555252.5:ENST00000555709.7:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000557539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.51887	2.58369	2.64851	0.0358636	0.00492353	0.147298	0.0366648
chr21	33528514	33528604	18220586	0	-	0.433333	(0.42,0.455]	chr21	1546387	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	36	2	2.26097	2.583565	2.90616	0.00404179	0.00162359	0.032143	0.0169915
chr1	244854927	244855027	1591284	0	-	0.36	(0.33,0.36]	chr1	158391	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	67	2	2.20982	2.583495	2.95717	0.00125321	6.93918e-6	0.0133145	2.24784e-4
chr3	13317583	13317680	4046197	0	-	0.628866	(0.59,1]	chr3	339510	15	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.03921	2.583455	3.1277	0.0371471	0.00490589	0.151849	0.0366648
chr13	25326974	25327034	13647819	0	+	0.366667	(0.36,0.39]	chr13	1075896	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000381747.7:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.1437	2.583425	3.02315	0.0340515	8.65481e-4	0.141465	0.0100741
chr16	22535008	22535106	15591476	0	+	0.591837	(0.59,1]	chr16	1236299	14	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	41	2	2.24397	2.583385	2.9228	0.0206682	0.00981698	0.0997234	0.0612992
chr17	59661442	59661509	16295235	0	+	0.537313	(0.53,0.59]	chr17	1321647	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000483176.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	96	2	2.3589	2.5832800000000002	2.80766	2.30272e-4	1.73841e-4	0.00382267	0.00282343
chr16	11841906	11841964	15856715	0	-	0.396552	(0.39,0.42]	chr16	1266793	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000574823.5:ENST00000570767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	2.18155	2.583015	2.98448	0.0283931	2.45186e-4	0.127654	0.00370692
chr1	67411407	67411506	1079120	0	-	0.323232	(0.29,0.33]	chr1	110137	37	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	11	48	2	2.52115	2.58298	2.64481	0.00111965	1.57288e-4	0.0128408	0.00260854
chr1	93152697	93152796	1171191	0	-	0.292929	(0.29,0.33]	chr1	115372	31	UTR3	UTR3:EXON_MRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	2.45373	2.58289	2.71205	0.0156405	0.00120479	0.084273700000000007	0.0129255
chr5	118974492	118974585	6174265	0	+	0.301075	(0.29,0.33]	chr5	481546	5	PRIMIRNA	PRIMIRNA	MIR1244-2	ENSG00000283498.1	ENST00000636449.1	miRNA	primary_miRNA	miRNA	primary_miRNA	26	103	2	2.19532	2.582755	2.97019	2.2556e-4	1.57156e-6	0.00375226	5.84967e-5
chr1	16317531	16317631	869592	0	-	0.44	(0.42,0.455]	chr1	88616	17	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	12	62	2	1.90662	2.58267	3.25872	0.0031474	4.85053e-5	0.0265484	0.00110436
chr5	96790295	96790367	6721249	0	-	0.416667	(0.39,0.42]	chr5	517437	1	CDS	CDS:EXON_MRNA	ERAP1	ENSG00000164307.13	ENST00000296754.7:ENST00000443439.7:ENST00000507859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	28	2	1.99911	2.5826149999999997	3.16612	0.0477207	4.03393e-4	0.17993	0.00550292
chr10	60788059	60788146	11063625	0	+	0.356322	(0.33,0.36]	chr10	841944	1	CDS	CDS:EXON_MRNA:INTRON	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2:ENST00000487784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	51	2	2.37682	2.582335	2.78785	0.00115378	3.11498e-4	0.0130851	0.00449391
chr2	112663125	112663225	2001922	0	+	0.37	(0.36,0.39]	chr2	190058	2	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	1.85874	2.582325	3.30591	0.0415243	1.89047e-4	0.164804	0.003022
chr10	45004733	45004832	11023938	0	+	0.393939	(0.39,0.42]	chr10	838844	8	UTR3	UTR3:EXON_MRNA	ZNF22	ENSG00000165512.5	ENST00000298299.4	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.11399	2.5821449999999997	3.0503	0.014455	0.00570576	0.0787564	0.0424438
chrX	119583352	119583450	18841635	0	+	0.397959	(0.39,0.42]	chrX	1605602	2	UTR3	UTR3:EXON_MRNA:INTRON	UBE2A	ENSG00000077721.16	ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000628549.1:ENST00000371569.6:ENST00000628734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	2.11399	2.5821449999999997	3.0503	0.014455	0.00570576	0.0787564	0.0424438
chr1	26779887	26779983	111011	0	+	0.572917	(0.53,0.59]	chr1	13354	10	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	30	2	1.78041	2.58194	3.38347	0.0407112	0.00132446	0.163285	0.0138834
chr11	118751593	118751691	12625443	0	-	0.387755	(0.36,0.39]	chr11	979521	40	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	37	2	1.87107	2.581935	3.2928	0.00923108	2.65442e-4	0.0583477	0.004287
chr1	154207073	154207168	1302805	0	-	0.389474	(0.36,0.39]	chr1	131189	5	UTR3	UTR3:EXON_MRNA	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	66	2	2.1181	2.5819	3.0457	0.00385216	8.64539e-6	0.032128	2.4407e-4
chr1	27914443	27914515	911008	0	-	0.583333	(0.53,0.59]	chr1	95265	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000373909.7:ENST00000313433.11:ENST00000444045.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.50447	2.581705	2.65894	0.0301162	0.0193255	0.130016	0.0943643
chr17	28700172	28700250	16177222	0	+	0.589744	(0.53,0.59]	chr17	1305462	1	CDS	CDS:EXON_MRNA	SUPT6H	ENSG00000109111.15	ENST00000347486.8:ENST00000314616.11:ENST00000581510.1:ENST00000583340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.50447	2.581705	2.65894	0.0301162	0.0193255	0.130016	0.0943643
chr19	42199063	42199157	17573066	0	-	0.542553	(0.53,0.59]	chr19	1477583	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DEDD2	ENSG00000160570.14	ENST00000596251.6:ENST00000336034.8:ENST00000595337.5:ENST00000593804.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.50447	2.581705	2.65894	0.0301162	0.0193255	0.130016	0.0943643
chrX	9716844	9716944	18569295	0	+	0.55	(0.53,0.59]	chrX	1586578	7	UTR3	UTR3:EXON_MRNA:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.50447	2.581705	2.65894	0.0301162	0.0193255	0.130016	0.0943643
chr11	61368909	61369009	11968871	0	+	0.54	(0.53,0.59]	chr11	916935	3	UTR3	UTR3:EXON_MRNA	TMEM138	ENSG00000149483.12	ENST00000278826.11:ENST00000381787.2:ENST00000539776.1:ENST00000543833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.515	2.5816850000000002	2.64837	0.0292633	0.0199467	0.129773	0.0984041
chr12	123408285	123408382	13126871	0	+	0.556701	(0.53,0.59]	chr12	1025725	7	UTR3	UTR3:EXON_MRNA	KMT5A	ENSG00000183955.13	ENST00000330479.8:ENST00000402868.8:ENST00000437519.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.515	2.5816850000000002	2.64837	0.0292633	0.0199467	0.129773	0.0984041
chr16	88715784	88715854	16074390	0	-	0.571429	(0.53,0.59]	chr16	1291603	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	PIEZO1:MIR4722	ENSG00000103335.22:ENSG00000284585.1	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000518793.6:ENST00000521877.1:ENST00000327397.8:ENST00000578292.1:ENST00000472168.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	2	19	2	2.515	2.5816850000000002	2.64837	0.0292633	0.0199467	0.129773	0.0984041
chr3	184325903	184325957	3949257	0	+	0.555556	(0.53,0.59]	chr3	332454	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000448284.1:ENST00000466311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.515	2.5816850000000002	2.64837	0.0292633	0.0199467	0.129773	0.0984041
chr6	33418086	33418142	7669571	0	-	0.535714	(0.53,0.59]	chr6	587686	1	CDS	CDS:UTR5:EXON_MRNA	CUTA	ENSG00000112514.18	ENST00000374500.10:ENST00000488034.6:ENST00000374484.8:ENST00000482684.5:ENST00000487637.1:ENST00000492510.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.515	2.5816850000000002	2.64837	0.0292633	0.0199467	0.129773	0.0984041
chr9	129634155	129634255	10486403	0	+	0.56	(0.53,0.59]	chr9	791673	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5:ENST00000613644.4:ENST00000617943.4:ENST00000611055.4:ENST00000372483.9:ENST00000481189.1:ENST00000482347.1:ENST00000372481.7:ENST00000372480.1:ENST00000486391.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.515	2.5816850000000002	2.64837	0.0292633	0.0199467	0.129773	0.0984041
chr9	83971881	83971958	10712904	0	-	0.675325	(0.59,1]	chr9	810502	1	CDS	CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5	protein_coding	protein_coding	protein_coding	protein_coding	15	188	2	2.38418	2.58142	2.77866	7.30875e-4	5.07696e-5	0.00918532	0.00104173
chr3	43719145	43719245	3441069	0	+	0.37	(0.36,0.39]	chr3	299384	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000649763.1:ENST00000643140.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000454293.2:ENST00000642351.1:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	60	2	2.27411	2.581375	2.88864	0.00289952	2.76515e-5	0.0258199	6.33595e-4
chr4	57022151	57022246	4851201	0	+	0.389474	(0.36,0.39]	chr4	399835	1	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	33	2	2.52746	2.581335	2.63521	0.00633242	0.00115604	0.0446708	0.0125677
chr3	128479724	128479824	4441107	0	-	0.57	(0.53,0.59]	chr3	368923	4	UTR3	UTR3:EXON_MRNA	GATA2	ENSG00000179348.12	ENST00000341105.7	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	1.76849	2.5813249999999996	3.39416	0.0420665	0.00126006	0.158792	0.013837
chr2	85351770	85351862	2770315	0	-	0.532609	(0.53,0.59]	chr2	245707	2	CDS	CDS:EXON_MRNA:INTRON	RETSAT	ENSG00000042445.14	ENST00000295802.9:ENST00000449375.1:ENST00000409984.2:ENST00000490291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	2.14205	2.581295	3.02054	0.0123179	0.00577011	0.070688	0.0426551
chr4	78008599	78008688	5481618	0	-	0.325843	(0.29,0.33]	chr4	439413	2	EXON_PSEUDO	EXON_PSEUDO	RP11-777B9.5	ENSG00000249072.1	ENST00000510231.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	95	473	2	1.87858	2.581165	3.28375	2.27795e-4	1.45845e-10	0.00378703	1.89366e-8
chr7	12344194	12344290	8683093	0	-	0.427083	(0.42,0.455]	chr7	663945	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	1.97151	2.5811450000000002	3.19078	0.0084649	0.00310864	0.0546473	0.0274272
chr2	197501073	197501155	2292609	0	+	0.439024	(0.42,0.455]	chr2	207876	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HSPE1:HSPE1-MOB4	ENSG00000115541.11:ENSG00000270757.1	ENST00000409729.1:ENST00000473395.1:ENST00000233893.10:ENST00000409468.1:ENST00000604458.1:ENST00000495200.1:ENST00000465573.1:ENST00000463841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	58	2	2.37038	2.5811	2.79182	7.44716e-4	2.81794e-4	0.00891589	0.00451339
chr6	135195747	135195832	7414854	0	+	0.6	(0.59,1]	chr6	568297	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5:ENST00000534736.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	2.0452	2.580835	3.11647	0.0179494	0.00535979	0.0939469	0.0406564
chr2	96864704	96864792	2792276	0	-	0.545455	(0.53,0.59]	chr2	249241	1	CDS	CDS:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000482925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.88327	2.5806500000000003	3.2780300000000002	0.0298124	4.08373e-5	0.129773	8.76332e-4
chr16	46956831	46956929	15928730	0	-	0.295918	(0.29,0.33]	chr16	1277626	16	UTR3	UTR3:EXON_MRNA	DNAJA2	ENSG00000069345.12	ENST00000317089.10:ENST00000563158.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	34	2	2.34203	2.5805	2.81897	0.010113	2.43076e-4	0.0626311	0.00367789
chr1	42842692	42842780	162247	0	+	0.5	(0.49,0.53]	chr1	20420	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	29	2	2.56183	2.58032	2.59881	0.0261296	0.00184545	0.118976	0.0178046
chr15	66582189	66582248	14984356	0	+	0.491525	(0.49,0.53]	chr15	1178034	1	EXON_LNCRNA	EXON_LNCRNA	LINC01169	ENSG00000259471.1	ENST00000558797.1	lncRNA	lncRNA	lncRNA	lncRNA	4	29	2	2.56183	2.58032	2.59881	0.0261296	0.00184545	0.118976	0.0178046
chr12	6529512	6529593	12713542	0	+	0.567901	(0.53,0.59]	chr12	986613	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000539084.5:ENST00000315579.10:ENST00000539885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	45	2	2.0404	2.5801600000000002	3.11992	0.0362529	1.09102e-4	0.148525	0.00194222
chr13	51932966	51933065	14030934	0	-	0.383838	(0.36,0.39]	chr13	1100362	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP7B	ENSG00000123191.16	ENST00000634519.1:ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000634810.1:ENST00000673867.1:ENST00000673923.1:ENST00000448424.7:ENST00000673696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	23	2	2.48922	2.5801600000000002	2.6711	0.0110399	0.00434596	0.0652374	0.0335517
chr4	150849498	150849575	5731346	0	-	0.363636	(0.36,0.39]	chr4	452889	2	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.48922	2.5801600000000002	2.6711	0.0110399	0.00434596	0.0652374	0.0335517
chr10	79316125	79316224	11148610	0	+	0.414141	(0.39,0.42]	chr10	847412	20	UTR3	UTR3:EXON_MRNA	ZMIZ1	ENSG00000108175.18	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	2.19876	2.580035	2.96131	0.00372927	9.04431e-5	0.031224	0.00167558
chr19	582931	583025	17188341	0	+	0.638298	(0.59,1]	chr19	1410791	2	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	449	2	2.38525	2.579965	2.77468	9.33043e-5	6.75885e-6	0.00186388	1.99919e-4
chr1	67412706	67412806	1079133	0	-	0.32	(0.29,0.33]	chr1	110137	50	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	20	84	2	2.40314	2.57994	2.75674	2.31686e-4	9.35404e-6	0.00384041	2.6068e-4
chr21	45468604	45468695	18145464	0	+	0.593407	(0.59,1]	chr21	1539676	5	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	2.30623	2.579885	2.85354	0.0170607	2.78748e-4	0.0896731	0.00412391
chr7	101207650	101207724	8953637	0	-	0.581081	(0.53,0.59]	chr7	684658	2	CDS	CDS:EXON_MRNA:INTRON	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8	protein_coding	protein_coding	protein_coding	protein_coding	4	31	2	2.36991	2.5798550000000002	2.7898	0.0128364	0.00501452	0.0719798	0.0370872
chrX	110003874	110003970	18819234	0	+	0.635417	(0.59,1]	chrX	1603894	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	52	2	2.46484	2.5798050000000003	2.69477	0.020208	0.00383661	0.0978331	0.0310411
chr16	68126470	68126540	15714259	0	+	0.4	(0.39,0.42]	chr16	1250988	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2:ENST00000565750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	30	2	1.96364	2.57976	3.19588	0.00890556	0.00321212	0.0565003	0.0280721
chr18	9955885	9955983	16756149	0	+	0.357143	(0.33,0.36]	chr18	1381801	18	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	11	50	2	2.3652	2.5797350000000003	2.79427	8.24779e-4	1.77242e-4	0.00968205	0.0030964400000000002
chr5	32591624	32591687	5925133	0	+	0.460317	(0.455,0.49]	chr5	464180	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000513013.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000502897.5:ENST00000510442.1:ENST00000504789.5:ENST00000511988.5:ENST00000504016.1:ENST00000511175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	61	2	2.3153	2.5792200000000003	2.84314	0.00184266	7.87569e-5	0.0185307	0.00149607
chr2	86482015	86482102	1927351	0	+	0.402299	(0.39,0.42]	chr2	181648	2	CDS	CDS:UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	41	2	2.5371	2.579205	2.62131	0.00609677	5.20981e-4	0.0439136	0.00674037
chr12	76047034	76047134	13423842	0	-	0.44	(0.42,0.455]	chr12	1056597	106	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.11785	2.57894	3.04003	0.0154862	7.68268e-4	0.0836691	0.00916171
chr2	47690715	47690803	2633790	0	-	0.613636	(0.59,1]	chr2	237030	1	EXON_PSEUDO	EXON_PSEUDO	AC079250.1	ENSG00000230979.3	ENST00000456046.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	16	194	2	2.50716	2.5785099999999996	2.64986	2.72389e-4	1.41809e-4	0.00439014	0.0023917
chr1	32366322	32366422	922265	0	-	0.49	(0.455,0.49]	chr1	97129	18	UTR3	UTR3:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.46624	2.578385	2.69053	0.0182983	0.0094145	0.0925808	0.0592633
chr1	236595539	236595606	1568677	0	-	0.462687	(0.455,0.49]	chr1	157140	1	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.46624	2.578385	2.69053	0.0182983	0.0094145	0.0925808	0.0592633
chr16	3663492	3663562	15830529	0	-	0.485714	(0.455,0.49]	chr16	1263615	2	CDS	CDS:EXON_MRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.46624	2.578385	2.69053	0.0182983	0.0094145	0.0925808	0.0592633
chr9	4860275	4860375	10166153	0	+	0.47	(0.455,0.49]	chr9	765575	1	UTR3	UTR3:EXON_MRNA	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.46624	2.578385	2.69053	0.0182983	0.0094145	0.0925808	0.0592633
chr5	37290611	37290710	6539929	0	-	0.414141	(0.39,0.42]	chr5	506493	26	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	1.85749	2.5783650000000002	3.29924	0.00953248	1.02206e-5	0.0599768	3.07123e-4
chr2	132254786	132254885	2878620	0	-	0.50505	(0.49,0.53]	chr2	257829	16	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	11	72	2	2.09768	2.5783	3.05892	0.00318615	1.79873e-5	0.0279693	4.46935e-4
chr6	28903874	28903971	7652691	0	-	0.453608	(0.42,0.455]	chr6	583182	10	UTR3	UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	31	2	2.51988	2.578265	2.63665	0.0048172	0.00300574	0.0365653	0.0267032
chr1	226987096	226987185	740609	0	+	0.382022	(0.36,0.39]	chr1	74765	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP5-1087E8.6:COQ8A	ENSG00000288674.1:ENSG00000163050.18	ENST00000366779.6:ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5:ENST00000479852.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	49	2	2.40203	2.5782499999999997	2.75447	8.61476e-4	3.28568e-4	0.0105878	0.00467693
chr15	90909326	90909415	15103633	0	+	0.573034	(0.53,0.59]	chr15	1188715	1	CDS	CDS:EXON_MRNA	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000557865.5:ENST00000560616.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	40	2	2.13589	2.578215	3.02054	0.00577011	0.00395526	0.0426551	0.0316946
chr6	31730667	31730754	7662107	0	-	0.586207	(0.53,0.59]	chr6	585118	2	UTR3	UTR3:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	12	86	2	2.35955	2.578185	2.79682	4.95201e-4	1.07815e-4	0.00694421	0.00192599
chr20	38090074	38090173	17782057	0	+	0.363636	(0.36,0.39]	chr20	1502505	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	40	2	2.29974	2.5777900000000002	2.85584	0.00926291	1.78887e-4	0.0586162	0.0028962
chr1	180825254	180825344	586010	0	+	0.4	(0.39,0.42]	chr1	60701	2	CDS	CDS:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.44959	2.57775	2.70591	0.0185716	0.00167534	0.0932453	0.0164993
chr16	29799417	29799494	15626688	0	+	0.558442	(0.53,0.59]	chr16	1239275	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000160827.9:ENST00000400751.9:ENST00000569382.2:ENST00000563666.1:ENST00000563263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	34	2	2.16037	2.57774	2.99511	0.0254312	9.46531e-4	0.117089	0.010681
chr6	33301660	33301759	7669219	0	-	0.50505	(0.49,0.53]	chr6	587559	21	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5	protein_coding	protein_coding	protein_coding	protein_coding	15	90	2	2.35457	2.57742	2.80027	1.722e-4	1.04649e-4	0.00279898	0.0020295
chr7	106090704	106090804	8977608	0	-	0.32	(0.29,0.33]	chr7	687014	3	UTR3	UTR3:EXON_MRNA	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.45373	2.57729	2.70085	0.0156405	4.87372e-4	0.084273700000000007	0.00638318
chr11	66367771	66367869	12424329	0	-	0.612245	(0.59,1]	chr11	964647	1	CDS	CDS:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	53	2	2.54357	2.577155	2.61074	0.025486	0.00276959	0.117089	0.0240579
chr12	57269385	57269449	13354874	0	-	0.453125	(0.42,0.455]	chr12	1052526	2	CDS	CDS:UTR3:EXON_MRNA	RP11-123K3.4:R3HDM2	ENSG00000258830.1:ENSG00000179912.20	ENST00000548184.1:ENST00000393811.6:ENST00000347140.7:ENST00000402412.5:ENST00000358907.6:ENST00000441731.6:ENST00000634871.1:ENST00000429355.6:ENST00000403821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.34191	2.57683	2.81175	0.0159091	0.00227654	0.0854674	0.0209546
chr18	21629138	21629237	16777722	0	+	0.30303	(0.29,0.33]	chr18	1384081	1	UTR3	UTR3:EXON_MRNA	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	10	35	2	1.81695	2.576765	3.33658	0.0105563	1.69227e-4	0.0637867	0.00275464
chr2	151443528	151443618	2134597	0	+	0.388889	(0.36,0.39]	chr2	197770	1	CDS	CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.85874	2.57674	3.29474	0.0415243	0.00194306	0.164804	0.0185233
chr21	29329555	29329624	18089909	0	+	0.362319	(0.36,0.39]	chr21	1533705	2	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.85874	2.57674	3.29474	0.0415243	0.00194306	0.164804	0.0185233
chr18	12986861	12986957	16764015	0	+	0.5625	(0.53,0.59]	chr18	1382772	1	CDS	CDS:UTR3:EXON_MRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	74	2	2.21103	2.57667	2.94231	7.99474e-4	3.05722e-4	0.00995461	0.00442973
chr12	6595333	6595430	13187356	0	-	0.536082	(0.53,0.59]	chr12	1032370	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000647483.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	25	2	2.0404	2.576575	3.11275	0.0362529	0.00407571	0.148525	0.032143
chr20	49114299	49114396	17999398	0	-	0.546392	(0.53,0.59]	chr20	1525563	11	UTR3	UTR3:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.0404	2.576575	3.11275	0.0362529	0.00407571	0.148525	0.032143
chr10	92654595	92654695	11192289	0	+	0.27	[0,0.29]	chr10	851111	9	UTR3	UTR3:EXON_MRNA	KIF11	ENSG00000138160.7	ENST00000676757.1:ENST00000676647.1:ENST00000260731.5:ENST00000676621.1:ENST00000677720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	2.16074	2.57643	2.99212	0.0222978	0.0069187	0.105845	0.0473262
chr19	44916189	44916282	17349760	0	+	0.612903	(0.59,1]	chr19	1439263	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	APOC1	ENSG00000130208.10	ENST00000588750.5:ENST00000588802.5:ENST00000592535.6:ENST00000592885.5:ENST00000589781.1:ENST00000589078.1:ENST00000592176.1:ENST00000586638.5:ENST00000590334.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	78	2	2.57134	2.57636	2.58138	0.00259175	0.00235862	0.0237245	0.0215532
chr1	155291846	155291937	1307550	0	-	0.648352	(0.59,1]	chr1	132197	2	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	1.96265	2.5763249999999998	3.19	0.0238491	0.0039188	0.112466	0.0314356
chr2	84459172	84459269	2769122	0	-	0.701031	(0.59,1]	chr2	245554	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000651342.1:ENST00000483605.5:ENST00000442240.5:ENST00000491642.5:ENST00000430989.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	49	2	1.96265	2.5763249999999998	3.19	0.0238491	0.0039188	0.112466	0.0314356
chr3	177020831	177020931	4593435	0	-	0.41	(0.39,0.42]	chr3	379622	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	64	2	2.51567	2.576125	2.63658	3.21874e-4	1.80697e-4	0.00461043	0.00315126
chr12	52901945	52902045	13336964	0	-	0.55	(0.53,0.59]	chr12	1048626	1	CDS_START	CDS_START:CDS:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000549176.1:ENST00000546826.5:ENST00000547176.3:ENST00000548998.5:ENST00000546900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.85636	2.57612	3.29588	0.0197135	1.96478e-4	0.0983378	0.00335505
chr20	34927214	34927307	17767081	0	+	0.548387	(0.53,0.59]	chr20	1500611	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000477932.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	25	2	2.36244	2.57612	2.7898	0.0131162	0.0128364	0.073569	0.0719798
chr10	17237512	17237593	10938861	0	+	0.320988	(0.29,0.33]	chr10	833015	4	UTR3	UTR3:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	74	2	2.25163	2.5759600000000002	2.90029	0.00176075	4.54177e-6	0.0180053	1.42842e-4
chr17	78174376	78174471	16693270	0	-	0.589474	(0.53,0.59]	chr17	1375298	4	UTR3	UTR3:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5	protein_coding	protein_coding	protein_coding	protein_coding	7	49	2	2.08252	2.575955	3.06939	0.0050389	6.54756e-4	0.0372588	0.00860229
chr5	146142967	146143025	6891350	0	-	0.344828	(0.33,0.36]	chr5	527516	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	30	2	2.44986	2.575855	2.70185	0.00563343	0.00121183	0.0422191	0.0129756
chr5	138571076	138571141	6862522	0	-	0.553846	(0.53,0.59]	chr5	525244	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	60	2	2.43965	2.57573	2.71181	0.00168039	3.99651e-4	0.0175001	0.0054764
chr12	19089519	19089611	12763568	0	+	0.413043	(0.39,0.42]	chr12	991786	5	EXON_PSEUDO	EXON_PSEUDO	RPL7P6	ENSG00000227525.4	ENST00000480903.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	19	2	2.2627100000000002	2.5755350000000004	2.88836	0.0192666	0.0102432	0.0966228	0.062872
chr2	112117730	112117829	1999133	0	+	0.40404	(0.39,0.42]	chr2	189667	17	UTR3	UTR3:EXON_MRNA	TMEM87B	ENSG00000153214.11	ENST00000283206.9:ENST00000650799.1:ENST00000649734.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.2627100000000002	2.5755350000000004	2.88836	0.0192666	0.0102432	0.0966228	0.062872
chr2	175925975	175926075	3028097	0	-	0.4	(0.39,0.42]	chr2	268146	22	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.2627100000000002	2.5755350000000004	2.88836	0.0192666	0.0102432	0.0966228	0.062872
chr7	23312165	23312263	8724208	0	-	0.397959	(0.39,0.42]	chr7	666009	21	UTR3	UTR3:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.2627100000000002	2.5755350000000004	2.88836	0.0192666	0.0102432	0.0966228	0.062872
chr1	27404327	27404426	908746	0	-	0.454545	(0.42,0.455]	chr1	95011	2	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	17	96	2	2.44706	2.575235	2.70341	1.05285e-4	6.78234e-5	0.00204038	0.00131721
chr8	101205434	101205533	9976930	0	-	0.727273	(0.59,1]	chr8	752840	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	89	2	2.41177	2.57519	2.73861	0.00235332	0.00125376	0.0215127	0.0138274
chr17	59664786	59664847	16295272	0	+	0.409836	(0.39,0.42]	chr17	1321660	1	CDS	CDS:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000466513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	69	2	2.48357	2.574875	2.66618	0.00171404	4.28199e-5	0.017714	9.07048e-4
chr7	23516461	23516528	8725949	0	-	0.492537	(0.49,0.53]	chr7	666163	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.11	ENST00000297071.9:ENST00000392502.8:ENST00000538367.5:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1:ENST00000448549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	26	2	2.03065	2.5747850000000003	3.11892	0.0189484	0.00398244	0.0958835	0.0322851
chr7	76328881	76328980	8863404	0	-	0.383838	(0.36,0.39]	chr7	677476	22	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	26	131	2	2.14413	2.574765	3.0054	3.34256e-4	5.32273e-7	0.00509391	2.3385e-5
chr6	30737200	30737298	7659295	0	-	0.581633	(0.53,0.59]	chr6	584292	9	INTRON	INTRON	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5:ENST00000413165.5:ENST00000476729.5:ENST00000438162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.50447	2.57461	2.64475	0.0301162	0.00453071	0.130016	0.0351187
chr7	121124401	121124473	8495094	0	+	0.444444	(0.42,0.455]	chr7	648354	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	10	52	2	2.06706	2.57444	3.08182	0.00178874	6.80627e-4	0.0173692	0.00876781
chr10	3777569	3777668	11348529	0	-	0.343434	(0.33,0.36]	chr10	865180	17	UTR3	UTR3:EXON_MRNA:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.28792	2.574325	2.86073	0.0239159	0.0105608	0.112531	0.0644466
chr12	118246766	118246864	13108954	0	+	0.561224	(0.53,0.59]	chr12	1023124	8	EXON_PSEUDO	EXON_PSEUDO	RPS2P5	ENSG00000240342.3	ENST00000488803.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	52	2	2.50388	2.5743150000000004	2.64475	0.00453071	6.11414e-4	0.0351187	0.00763216
chr7	129017979	129018079	9060816	0	-	0.42	(0.39,0.42]	chr7	691874	1	CDS_START	CDS_START:CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.79377	2.574215	3.35466	0.0299302	1.40185e-4	0.129773	0.00236775
chr17	28573734	28573834	16485917	0	-	0.63	(0.59,1]	chr17	1347742	1	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	209	2	2.48185	2.5741899999999998	2.66653	3.18865e-4	7.20623e-5	0.00491578	0.00138336
chr11	110230508	110230605	12597161	0	-	0.43299	(0.42,0.455]	chr11	976511	12	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	31	2	2.24157	2.5738649999999996	2.90616	0.0087798	0.00162359	0.0562439	0.0169915
chr2	74969510	74969598	1893806	0	+	0.465909	(0.455,0.49]	chr2	179702	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE4	ENSG00000115350.12	ENST00000483063.2:ENST00000233699.8:ENST00000465242.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	2.15064	2.57367	2.9967	0.00661084	0.00650423	0.046082	0.0454205
chr7	107919743	107919840	8457485	0	+	0.350515	(0.33,0.36]	chr7	646335	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	58	2	2.27433	2.573565	2.8728	0.00200332	3.16831e-5	0.0196867	7.04278e-4
chr20	56365174	56365262	17834351	0	+	0.386364	(0.36,0.39]	chr20	1507867	2	CDS	CDS:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.25794	2.57356	2.88918	0.00429221	0.00212816	0.0333617	0.0206577
chr20	34280841	34280937	17946663	0	-	0.541667	(0.53,0.59]	chr20	1519947	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP4-785G19.5:AHCY	ENSG00000250917.1:ENSG00000101444.13	ENST00000512005.1:ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	6	41	2	2.23705	2.573415	2.90978	0.00857883	0.00245055	0.0552386	0.0221427
chr7	26276523	26276606	8183138	0	+	0.518072	(0.49,0.53]	chr7	624438	5	EXON_PSEUDO	EXON_PSEUDO	AC010677.5	ENSG00000232383.1	ENST00000441690.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	33	2	2.42431	2.573415	2.72252	0.0161474	0.0018555	0.0860154	0.0178545
chr7	128865376	128865427	8522607	0	+	0.431373	(0.42,0.455]	chr7	650498	1	CDS	CDS:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	11	64	2	2.47291	2.57332	2.67373	5.59707e-4	2.48605e-4	0.00771312	0.00375438
chr10	32009014	32009110	11441745	0	-	0.270833	[0,0.29]	chr10	872367	1	UTR3	UTR3:EXON_MRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.15488	2.5731599999999997	2.99144	0.0436536	0.00112713	0.170594	0.0122637
chr17	28943703	28943803	16488983	0	-	0.29	[0,0.29]	chr17	1348482	156	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	2.15488	2.5731599999999997	2.99144	0.0436536	0.00112713	0.170594	0.0122637
chr3	152455999	152456077	3818434	0	+	0.358974	(0.33,0.36]	chr3	325689	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.16995	2.573005	2.97606	0.0124739	0.00871774	0.0713206	0.0558165
chr1	6186087	6186185	842295	0	-	0.459184	(0.455,0.49]	chr1	84886	12	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	101	2	2.02345	2.5729800000000003	3.12251	7.02488e-4	4.80724e-6	0.00848325	1.65121e-4
chr3	13375572	13375641	4046813	0	-	0.550725	(0.53,0.59]	chr3	339672	2	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	81	2	1.92179	2.57287	3.22395	0.0100259	5.81032e-6	0.0623334	1.75356e-4
chr9	83661690	83661786	10710361	0	-	0.270833	[0,0.29]	chr9	810178	19	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	33	2	2.44493	2.57279	2.70065	0.00386792	5.07704e-4	0.0322452	0.00660682
chr16	22534811	22534909	15591474	0	+	0.581633	(0.53,0.59]	chr16	1236299	12	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPIPB5	ENSG00000243716.10	ENST00000415654.5:ENST00000521555.6:ENST00000424340.5:ENST00000451409.5:ENST00000517539.5:ENST00000357370.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	27	2	2.34461	2.5726050000000003	2.8006	0.0457008	0.00233666	0.168044	0.0221314
chr13	46146907	46147005	14009817	0	-	0.5	(0.49,0.53]	chr13	1098530	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	2.45798	2.572255	2.68653	0.00353238	0.00122977	0.029076	0.013593
chr5	139307515	139307605	6248862	0	+	0.422222	(0.42,0.455]	chr5	486959	1	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000505016.2:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	37	2	2.24157	2.572205	2.90284	0.0087798	4.27478e-4	0.0562439	0.00618684
chrX	3854827	3854927	18932327	0	-	0.53	(0.49,0.53]	chrX	1613472	22	EXON_LNCRNA	EXON_LNCRNA	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1:ENST00000661656.1:ENST00000661924.1:ENST00000381108.3:ENST00000669719.1:ENST00000655273.1:ENST00000456563.1	lncRNA	lncRNA	lncRNA	lncRNA	6	40	2	2.54558	2.572195	2.59881	0.0024326	0.00184545	0.0228485	0.0178046
chr17	48863647	48863747	16255735	0	+	0.31	(0.29,0.33]	chr17	1317495	7	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000258947.8	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.66431	2.5721600000000002	3.48001	0.0225076	0.00126219	0.10505	0.013837
chr1	226367543	226367608	1533083	0	-	0.584615	(0.53,0.59]	chr1	153435	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	27	2	2.35511	2.57205	2.78899	0.0445399	0.00245784	0.172163	0.0221765
chr19	18853251	18853350	17260636	0	+	0.585859	(0.53,0.59]	chr19	1425791	1	CDS	CDS:EXON_MRNA	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	27	2	2.35511	2.57205	2.78899	0.0445399	0.00245784	0.172163	0.0221765
chr3	133588549	133588644	3750853	0	+	0.4	(0.39,0.42]	chr3	321181	3	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.149	2.572035	2.99507	0.0149155	0.00637824	0.0812412	0.0449937
chr1	40267785	40267872	152970	0	+	0.436782	(0.42,0.455]	chr1	19147	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1:ENST00000472583.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.03532	2.57203	3.10874	0.040947	5.40397e-4	0.163285	0.00688813
chr8	47974881	47974962	9316278	0	+	0.530864	(0.53,0.59]	chr8	713588	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000518382.1:ENST00000521261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	114	2	1.9643	2.571975	3.17965	0.00299943	1.73234e-6	0.0266732	6.35589e-5
chr17	53106179	53106268	16270803	0	+	0.348315	(0.33,0.36]	chr17	1319815	6	EXON_PSEUDO	EXON_PSEUDO	MTCO1P40	ENSG00000262902.1	ENST00000574371.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	44	2	1.70359	2.57183	3.44007	0.0245566	1.36013e-5	0.114841	3.54469e-4
chr7	100435459	100435533	8951549	0	-	0.527027	(0.49,0.53]	chr7	683975	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPP1R35	ENSG00000160813.7	ENST00000292330.3:ENST00000487452.1:ENST00000470295.5:ENST00000476185.1:ENST00000491407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	22	2	2.49797	2.571625	2.64528	0.0202736	0.00843736	0.0984041	0.0546021
chr15	44717790	44717882	14899982	0	+	0.48913	(0.455,0.49]	chr15	1171710	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000561424.5:ENST00000648006.3:ENST00000349264.10:ENST00000559220.1:ENST00000561139.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	126	2	2.5627	2.571585	2.58047	8.02212e-5	1.30086e-5	0.00167176	3.42113e-4
chr9	112219298	112219397	10802875	0	-	0.252525	[0,0.29]	chr9	818409	17	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	23	84	2	2.32762	2.57157	2.81552	9.97136e-5	1.40878e-5	0.00180213	3.99697e-4
chr1	24842330	24842429	103292	0	+	0.313131	(0.29,0.33]	chr1	12089	15	UTR3	UTR3:EXON_MRNA	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	2.22218	2.571415	2.92065	0.023782	0.0117842	0.109413	0.0686664
chr1	109096835	109096934	396891	0	+	0.323232	(0.29,0.33]	chr1	38418	24	UTR3	UTR3:EXON_MRNA	TMEM167B	ENSG00000215717.7	ENST00000338272.9:ENST00000651489.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.22218	2.571415	2.92065	0.023782	0.0117842	0.109413	0.0686664
chr10	35516522	35516572	11009446	0	+	0.44	(0.42,0.455]	chr10	837229	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	1.95205	2.571415	3.19078	0.0248244	0.00310864	0.113644	0.0274272
chr11	57326238	57326322	12394030	0	-	0.511905	(0.49,0.53]	chr11	958503	4	UTR3	UTR3:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	1.99044	2.571255	3.15207	0.0435903	0.00347189	0.170594	0.0286293
chr6	2889264	2889363	7570634	0	-	0.494949	(0.49,0.53]	chr6	577661	21	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.99044	2.571255	3.15207	0.0435903	0.00347189	0.170594	0.0286293
chr16	3689054	3689137	15830808	0	-	0.481928	(0.455,0.49]	chr16	1263692	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571538.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.30139	2.57109	2.84079	0.0530131	0.00201021	0.195536	0.0190112
chr3	113723958	113724026	4360348	0	-	0.470588	(0.455,0.49]	chr3	363925	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NAA50	ENSG00000121579.13	ENST00000240922.8:ENST00000616174.1:ENST00000477813.5:ENST00000497525.5:ENST00000497255.1:ENST00000493454.5:ENST00000481432.5:ENST00000493900.5:ENST00000630058.1:ENST00000478020.1:ENST00000467022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.30139	2.57109	2.84079	0.0530131	0.00201021	0.195536	0.0190112
chr2	231455123	231455195	3226710	0	-	0.416667	(0.39,0.42]	chr2	283837	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	44	2	2.50974	2.571015	2.63229	0.00123319	7.8066e-4	0.0131207	0.00973486
chr22	21622555	21622654	18303187	0	+	0.565657	(0.53,0.59]	chr22	1554195	10	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	58	2	2.28509	2.570855	2.85662	0.0019345	4.88685e-4	0.0184806	0.00686067
chr4	1211742	1211841	5278760	0	-	0.393939	(0.39,0.42]	chr4	424832	4	UTR3	UTR3:EXON_MRNA	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000503594.5	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.91489	2.570755	3.22662	0.0197788	0.00257296	0.0960939	0.0229363
chr7	130166063	130166160	9063141	0	-	0.278351	[0,0.29]	chr7	692134	15	UTR3	UTR3:EXON_MRNA	TMEM209	ENSG00000146842.17	ENST00000397622.7:ENST00000473456.5:ENST00000462753.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.31697	2.5707	2.82443	0.0180803	0.00756459	0.0920398	0.0499309
chr11	65997717	65997815	12423531	0	-	0.510204	(0.49,0.53]	chr11	964316	13	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	1.56417	2.57043	3.57669	0.0289719	3.59064e-5	0.127437	8.71318e-4
chr1	47231715	47231802	985675	0	-	0.62069	(0.59,1]	chr1	104085	1	SS5_PROX	SS5_PROX:INTRON	TAL1	ENSG00000162367.11	ENST00000464796.5	protein_coding	processed_transcript	protein_coding	processed_transcript	3	41	2	2.44587	2.57032	2.69477	0.020208	0.0105307	0.0978331	0.0644466
chr6	32120770	32120836	7664458	0	-	0.651515	(0.59,1]	chr6	586012	1	CDS	CDS:EXON_MRNA	ATF6B	ENSG00000213676.13	ENST00000375201.8:ENST00000375203.8:ENST00000453203.2:ENST00000495579.5:ENST00000485314.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	41	2	2.44587	2.57032	2.69477	0.020208	0.0105307	0.0978331	0.0644466
chr9	33927880	33927980	10633490	0	-	0.63	(0.59,1]	chr9	803820	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000474372.1:ENST00000488443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	41	2	2.44587	2.57032	2.69477	0.020208	0.0105307	0.0978331	0.0644466
chr1	32329067	32329160	128482	0	+	0.516129	(0.49,0.53]	chr1	15931	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000428704.1:ENST00000490081.5:ENST00000482310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	38	2	2.13501	2.570195	3.00538	0.0287874	2.13868e-4	0.128869	0.0033174
chr6	42888540	42888639	7153869	0	+	0.414141	(0.39,0.42]	chr6	552211	22	UTR3	UTR3:EXON_MRNA	RPL7L1	ENSG00000146223.16	ENST00000493763.7:ENST00000304734.9	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	1.75252	2.56995	3.38738	0.0297286	1.35138e-4	0.130016	0.0025017
chr1	202728645	202728742	1451711	0	-	0.443299	(0.42,0.455]	chr1	145774	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000647657.1:ENST00000649089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	49	2	2.3277	2.5698499999999997	2.812	0.00333145	2.25472e-4	0.0286606	0.00346549
chr5	134925505	134925600	6846850	0	-	0.452632	(0.42,0.455]	chr5	523925	10	EXON_PSEUDO	EXON_PSEUDO	MTND5P11	ENSG00000248923.1	ENST00000511037.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	35	2	2.3277	2.569725	2.81175	0.00333145	0.00227654	0.0286606	0.0209546
chr1	214655321	214655403	710586	0	+	0.439024	(0.42,0.455]	chr1	71945	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CENPF	ENSG00000117724.13	ENST00000366955.8:ENST00000469862.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.19674	2.5696849999999998	2.94263	0.0254904	0.00766873	0.117089	0.0503696
chr12	45850133	45850231	12851678	0	+	0.428571	(0.42,0.455]	chr12	998018	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6:ENST00000479608.5:ENST00000444670.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.19674	2.5696849999999998	2.94263	0.0254904	0.00766873	0.117089	0.0503696
chr12	56746978	56747032	13352848	0	-	0.462963	(0.455,0.49]	chr12	1051933	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5:ENST00000552408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.30139	2.569655	2.83792	0.0530131	0.0110512	0.195536	0.0665375
chr16	71733057	71733157	16007949	0	-	0.48	(0.455,0.49]	chr16	1286071	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	AP1G1	ENSG00000166747.13	ENST00000299980.9:ENST00000569748.5:ENST00000564155.5:ENST00000393512.7:ENST00000570052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.30139	2.569655	2.83792	0.0530131	0.0110512	0.195536	0.0665375
chr17	29286470	29286566	16491136	0	-	0.479167	(0.455,0.49]	chr17	1348893	6	CDS	CDS:EXON_MRNA:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.30139	2.569655	2.83792	0.0530131	0.0110512	0.195536	0.0665375
chr3	184027260	184027359	4622779	0	-	0.474747	(0.455,0.49]	chr3	381686	10	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	16	2	2.30139	2.569655	2.83792	0.0530131	0.0110512	0.195536	0.0665375
chr6	98920804	98920904	7856254	0	-	0.47	(0.455,0.49]	chr6	601631	27	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.30139	2.569655	2.83792	0.0530131	0.0110512	0.195536	0.0665375
chr8	56963692	56963792	9836828	0	-	0.46	(0.455,0.49]	chr8	744432	59	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.30139	2.569655	2.83792	0.0530131	0.0110512	0.195536	0.0665375
chr2	70088230	70088326	1878483	0	+	0.635417	(0.59,1]	chr2	177396	5	CDS	CDS:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	28	339	2	2.47764	2.56959	2.66154	1.09103e-4	2.12921e-5	0.00209898	5.0932e-4
chr6	152971071	152971162	8029504	0	-	0.208791	[0,0.29]	chr6	614119	7	UTR3	UTR3:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	1.81505	2.569515	3.32398	0.0409713	1.88525e-4	0.163285	0.00301697
chr8	22254302	22254401	9223622	0	+	0.282828	[0,0.29]	chr8	705500	39	UTR3	UTR3:EXON_MRNA	POLR3D	ENSG00000168495.13	ENST00000306433.9:ENST00000397802.8	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.81505	2.569515	3.32398	0.0409713	1.88525e-4	0.163285	0.00301697
chr4	26432872	26432970	4766699	0	+	0.367347	(0.36,0.39]	chr4	394281	20	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	10	51	2	2.43116	2.56944	2.70772	0.00129293	1.92058e-4	0.0141517	0.00305488
chrX	1389240	1389337	18925597	0	-	0.639175	(0.59,1]	chrX	1612959	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	49	2	2.14957	2.569345	2.9891200000000002	0.0126053	0.00823979	0.0719957	0.0540283
chr2	96285179	96285259	2790370	0	-	0.6375	(0.59,1]	chr2	248734	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000429650.1:ENST00000480615.1:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	43	2	2.42639	2.569305	2.71222	0.0409084	0.00398753	0.163285	0.031888
chr7	135927253	135927352	9085553	0	-	0.383838	(0.36,0.39]	chr7	693646	6	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	28	147	2	2.32911	2.56904	2.80897	1.94374e-4	7.90545e-7	0.00332647	3.27212e-5
chr19	18307274	18307368	17499070	0	-	0.510638	(0.49,0.53]	chr19	1468052	12	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.01913	2.569025	3.11892	0.0111252	0.00398244	0.0665375	0.0322851
chr4	128271117	128271216	5639356	0	-	0.282828	[0,0.29]	chr4	449280	20	UTR3	UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5:ENST00000503872.1:ENST00000503588.1	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.44493	2.5690049999999998	2.69308	0.00386792	0.00137675	0.0322452	0.0142677
chr21	45477749	45477821	18145562	0	+	0.75	(0.59,1]	chr21	1539704	1	CDS	CDS:EXON_MRNA:PRIMIRNA	COL18A1:MIR6815	ENSG00000182871.16:ENSG00000275167.1	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000611994.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	5	72	2	2.11074	2.569	3.02726	0.0305	2.90566e-4	0.130204	0.00427123
chr1	220030385	220030480	1511316	0	-	0.505263	(0.49,0.53]	chr1	151105	1	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	83	2	2.20512	2.56897	2.93282	3.30011e-4	2.72915e-4	0.00504024	0.00405845
chr1	19173016	19173093	876684	0	-	0.467532	(0.455,0.49]	chr1	90299	3	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	47	2	2.30416	2.568495	2.83283	0.00182199	6.06795e-4	0.0176039	0.00817698
chr2	38745132	38745187	2605143	0	-	0.509091	(0.49,0.53]	chr2	234663	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000477635.5:ENST00000443213.5:ENST00000487773.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	1.90685	2.568455	3.23006	0.0534351	0.00253719	0.184995	0.0233955
chr3	196471622	196471720	4665836	0	-	0.5	(0.49,0.53]	chr3	385954	30	UTR3	UTR3:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.90685	2.568455	3.23006	0.0534351	0.00253719	0.184995	0.0233955
chr9	34087171	34087269	10634752	0	-	0.5	(0.49,0.53]	chr9	803967	9	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	1.90685	2.568455	3.23006	0.0534351	0.00253719	0.184995	0.0233955
chr11	14466353	14466426	12281642	0	-	0.39726	(0.39,0.42]	chr11	949597	2	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	2.24847	2.568415	2.88836	0.0102432	0.00147373	0.062872	0.0150084
chrX	47144579	47144679	19059820	0	-	0.69	(0.59,1]	chrX	1619812	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFB11	ENSG00000147123.11	ENST00000377811.4:ENST00000276062.8	protein_coding	protein_coding	protein_coding	protein_coding	5	65	2	2.19905	2.5683800000000003	2.93771	0.0105866	0.00168288	0.0644466	0.0175167
chr3	184317434	184317497	3949145	0	+	0.587302	(0.53,0.59]	chr3	332382	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000455679.5:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	46	2	2.56002	2.5683100000000003	2.5766	0.00634904	8.34608e-4	0.0446708	0.00978328
chr13	113640545	113640638	13909848	0	+	0.376344	(0.36,0.39]	chr13	1090561	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000494812.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	40	2	2.18868	2.568245	2.94781	0.00436393	3.10006e-4	0.0340502	0.0044733
chrX	130065238	130065337	19220952	0	-	0.525253	(0.49,0.53]	chrX	1633279	14	UTR3	UTR3:EXON_MRNA	ELF4	ENSG00000102034.17	ENST00000308167.10:ENST00000335997.11:ENST00000615377.4	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.41364	2.56808	2.72252	0.0161474	0.0112538	0.0860154	0.0665375
chr6	163572805	163572904	7540855	0	+	0.333333	(0.33,0.36]	chr6	575649	22	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	59	2	2.19355	2.5679800000000004	2.94241	0.00302788	1.90888e-5	0.026885	4.67219e-4
chr19	18366347	18366446	17258218	0	+	0.444444	(0.42,0.455]	chr19	1425359	29	UTR3	UTR3:EXON_MRNA:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.32629	2.567945	2.8096	0.0153564	0.00253237	0.0832114	0.0233955
chr19	572581	572634	17188221	0	+	0.679245	(0.59,1]	chr19	1410747	2	UTR5	UTR5:EXON_MRNA:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	91	2	2.00297	2.567925	3.13288	0.0125191	1.67777e-4	0.0713905	0.00273359
chr12	95514097	95514194	13025188	0	+	0.319588	(0.29,0.33]	chr12	1014031	3	UTR3	UTR3:EXON_MRNA	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000550777.5:ENST00000551840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	69	2	2.24169	2.5679100000000004	2.89413	6.59608e-4	1.44116e-5	0.00865144	3.72082e-4
chr22	23895106	23895164	18309777	0	+	0.758621	(0.59,1]	chr22	1555585	1	UTR3	UTR3:EXON_MRNA	AP000350.10:MIF	ENSG00000251357.4:ENSG00000240972.2	ENST00000433835.3:ENST00000215754.8:ENST00000465752.1:ENST00000498385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	54	2	2.42324	2.56773	2.71222	0.0116918	0.00398753	0.0686664	0.031888
chr10	72887004	72887102	11113209	0	+	0.357143	(0.33,0.36]	chr10	845484	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCU	ENSG00000156026.14	ENST00000373053.7:ENST00000357157.10:ENST00000605597.5:ENST00000536019.5:ENST00000605416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	21	2	2.36984	2.5676699999999997	2.7655	0.0175892	0.00564505	0.0918323	0.041184
chr12	54232274	54232374	13342849	0	-	0.51	(0.49,0.53]	chr12	1049602	9	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.18239	2.56765	2.95291	0.024394	0.00119735	0.111797	0.0134293
chr19	13100656	13100748	17472270	0	-	0.576087	(0.53,0.59]	chr19	1463403	1	CDS	CDS:EXON_MRNA	LYL1	ENSG00000104903.5	ENST00000264824.5:ENST00000590974.1	protein_coding	protein_coding	protein_coding	protein_coding	9	67	2	2.51602	2.567625	2.61923	0.00264912	1.69911e-4	0.024013	0.00276512
chr9	34635417	34635517	10637513	0	-	0.44	(0.42,0.455]	chr9	804341	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SIGMAR1	ENSG00000147955.18	ENST00000277010.9:ENST00000679597.1:ENST00000353468.4:ENST00000378892.5:ENST00000497006.2:ENST00000680104.1:ENST00000681409.1:ENST00000680730.1:ENST00000680244.1:ENST00000477726.1:ENST00000461426.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	2.07164	2.567285	3.06293	0.0101168	0.00492128	0.0626311	0.0366648
chr2	26191073	26191161	2565636	0	-	0.511364	(0.49,0.53]	chr2	230525	6	UTR3	UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	29	2	2.26641	2.5672550000000003	2.8681	0.0190546	0.00175299	0.093872	0.0171299
chr1	19148059	19148127	876398	0	-	0.558824	(0.53,0.59]	chr1	90164	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.34461	2.567205	2.7898	0.0457008	0.0128364	0.168044	0.0719798
chr10	3103778	3103861	10903535	0	+	0.566265	(0.53,0.59]	chr10	829700	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000421751.1:ENST00000407806.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	19	2	2.34461	2.567205	2.7898	0.0457008	0.0128364	0.168044	0.0719798
chr15	52886372	52886470	14936406	0	+	0.581633	(0.53,0.59]	chr15	1174328	9	EXON_PSEUDO	EXON_PSEUDO	RPSAP55	ENSG00000214896.4	ENST00000477347.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	19	2	2.34461	2.567205	2.7898	0.0457008	0.0128364	0.168044	0.0719798
chr15	79889092	79889179	15402329	0	-	0.505747	(0.49,0.53]	chr15	1217902	1	CDS	CDS:UTR3:EXON_MRNA	MTHFS:ST20-MTHFS	ENSG00000136371.11:ENSG00000259332.3	ENST00000258874.4:ENST00000559722.2:ENST00000615374.5:ENST00000479961.1:ENST00000494999.1:ENST00000560919.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	1.78308	2.567205	3.35133	0.0425234	0.00150139	0.167547	0.0152367
chr22	41177863	41177962	18378972	0	+	0.555556	(0.53,0.59]	chr22	1564239	12	CDS	CDS:EXON_MRNA	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.34461	2.567205	2.7898	0.0457008	0.0128364	0.168044	0.0719798
chr17	82718343	82718443	16385057	0	+	0.57	(0.53,0.59]	chr17	1332777	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	19	2	2.35511	2.56716	2.77921	0.0445399	0.0132865	0.172163	0.0740932
chr2	64635828	64635926	2705000	0	-	0.581633	(0.53,0.59]	chr2	241251	44	UTR3	UTR3:EXON_MRNA	SERTAD2	ENSG00000179833.4	ENST00000313349.3	protein_coding	protein_coding	protein_coding	protein_coding	2	19	2	2.35511	2.56716	2.77921	0.0445399	0.0132865	0.172163	0.0740932
chr20	35631491	35631578	17954759	0	-	0.574713	(0.53,0.59]	chr20	1521076	1	CDS	CDS:UTR3:EXON_MRNA	CPNE1	ENSG00000214078.13	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000483495.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000486021.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	19	2	2.35511	2.56716	2.77921	0.0445399	0.0132865	0.172163	0.0740932
chr3	50607967	50608054	4179550	0	-	0.574713	(0.53,0.59]	chr3	352075	4	CDS	CDS:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	19	2	2.35511	2.56716	2.77921	0.0445399	0.0132865	0.172163	0.0740932
chr5	256514	256609	5848247	0	+	0.589474	(0.53,0.59]	chr5	459604	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000510361.5:ENST00000264932.11:ENST00000514027.5:ENST00000515752.5:ENST00000511810.5:ENST00000515815.5:ENST00000509082.1:ENST00000503674.5:ENST00000509564.1:ENST00000507522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	19	2	2.35511	2.56716	2.77921	0.0445399	0.0132865	0.172163	0.0740932
chr7	74689128	74689227	8337511	0	+	0.555556	(0.53,0.59]	chr7	635329	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GTF2I	ENSG00000263001.7	ENST00000650807.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000432143.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	19	2	2.35511	2.56716	2.77921	0.0445399	0.0132865	0.172163	0.0740932
chr1	110023349	110023447	401939	0	+	0.459184	(0.455,0.49]	chr1	39336	18	UTR3	UTR3:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8	protein_coding	protein_coding	protein_coding	protein_coding	10	67	2	2.26324	2.5670650000000004	2.87089	0.00868189	1.64427e-5	0.0558093	4.16297e-4
chr17	81511694	81511762	16707879	0	-	0.441176	(0.42,0.455]	chr17	1377338	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.07474	2.566815	3.05889	0.0338882	0.00524205	0.139841	0.0399155
chr6	7882760	7882855	7587983	0	-	0.4	(0.39,0.42]	chr6	578854	14	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.149	2.5667400000000002	2.98448	0.0149155	2.45186e-4	0.0812412	0.00370692
chr14	23033563	23033618	14528837	0	-	0.545455	(0.53,0.59]	chr14	1138389	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	30	2	2.23406	2.56661	2.89916	0.00890406	0.00870728	0.0565003	0.0558165
chr7	141010418	141010503	9112070	0	-	0.447059	(0.42,0.455]	chr7	695436	1	CDS	CDS:EXON_MRNA:INTRON	MRPS33	ENSG00000090263.16	ENST00000324787.10:ENST00000393008.7:ENST00000469351.1:ENST00000484502.1:ENST00000496958.5:ENST00000467334.1:ENST00000496641.1:ENST00000485202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	33	2	2.56263	2.56657	2.57051	0.0265466	9.19381e-4	0.120071	0.0104432
chr6	33275964	33275985	7121550	0	+	0.47619	(0.455,0.49]	chr6	547506	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1:ENST00000479802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	107	2	1.90795	2.56656	3.22517	0.00332113	5.27291e-7	0.0285847	2.31924e-5
chr16	18793053	18793152	15877076	0	-	0.464646	(0.455,0.49]	chr16	1269296	15	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	186	2	2.5197	2.5664949999999997	2.61329	6.37521e-5	3.37335e-6	0.00136352	1.11428e-4
chr6	109382278	109382378	7886812	0	-	0.67	(0.59,1]	chr6	603726	1	CDS_START	CDS_START:CDS:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000324953.9:ENST00000275080.11:ENST00000512821.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	66	2	2.0452	2.566135	3.08707	0.0179494	8.79989e-4	0.0939469	0.0107294
chr6	35872562	35872645	7678319	0	-	0.578313	(0.53,0.59]	chr6	588583	1	CDS	CDS:EXON_MRNA:INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.27113	2.5660749999999997	2.86102	0.0178853	0.0017805	0.0918323	0.0172974
chr10	46005745	46005839	11470921	0	-	0.361702	(0.36,0.39]	chr10	874825	8	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	1.94571	2.566065	3.18642	0.00359152	0.00208276	0.0302391	0.0195717
chr6	2890062	2890162	7570642	0	-	0.56	(0.53,0.59]	chr6	577661	29	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	1.65775	2.56597	3.47419	0.0573191	8.75273e-4	0.196623	0.0106963
chr16	28844418	28844484	15907773	0	-	0.681818	(0.59,1]	chr16	1273894	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	TUFM:MIR4721	ENSG00000178952.11:ENSG00000283845.1	ENST00000313511.8:ENST00000577590.1:ENST00000565012.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	3	43	2	2.4994	2.56577	2.63214	0.0333573	0.005622	0.137922	0.0421873
chr1	235112063	235112108	1560093	0	-	0.422222	(0.42,0.455]	chr1	156013	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5:ENST00000467767.5:ENST00000473132.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	2.21768	2.5657050000000003	2.91373	0.00892357	0.00277726	0.0567495	0.0241009
chr5	43496059	43496157	6561280	0	-	0.479592	(0.455,0.49]	chr5	508493	11	EXON_PSEUDO	EXON_PSEUDO:INTRON	C5orf34:EEF1A1P19	ENSG00000172244.9:ENSG00000249855.1	ENST00000306862.7:ENST00000503655.2:ENST00000513637.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	5	33	2	1.92777	2.565625	3.20348	0.0286531	3.27782e-4	0.128685	0.0046686
chr1	40097138	40097238	954927	0	-	0.72	(0.59,1]	chr1	100923	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641924.1:ENST00000527311.7:ENST00000372779.9:ENST00000526547.2:ENST00000641548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.89703	2.565255	3.23348	0.00861577	0.00352837	0.0555319	0.0298518
chr3	15251160	15251260	3325358	0	+	0.35	(0.33,0.36]	chr3	292828	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CAPN7	ENSG00000131375.10	ENST00000253693.7:ENST00000443567.5:ENST00000463417.5:ENST00000472400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.65713	2.5650649999999997	3.473	0.0528205	8.77304e-4	0.195536	0.0101202
chr5	138824529	138824619	6246972	0	+	0.488889	(0.455,0.49]	chr5	486744	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1:ENST00000518919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	2.15985	2.56455	2.96925	0.0128965	0.00698725	0.0722356	0.0473262
chr3	156541623	156541722	4538648	0	-	0.323232	(0.29,0.33]	chr3	376076	22	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	11	41	2	1.66337	2.56435	3.46533	0.0137224	2.24958e-5	0.0753413	5.90075e-4
chr4	38690075	38690172	4796586	0	+	0.319588	(0.29,0.33]	chr4	395570	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.45591	2.5643399999999996	2.67277	0.0255386	0.00406506	0.117089	0.032143
chr12	53413990	53414088	12886208	0	+	0.469388	(0.455,0.49]	chr12	1002329	29	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.92777	2.56423	3.20069	0.0286531	0.00285821	0.128685	0.0245841
chr10	5456086	5456179	10909058	0	+	0.494624	(0.49,0.53]	chr10	830425	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3:ENST00000484741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	86	2	2.51036	2.5640650000000003	2.61777	0.00172617	4.3382e-5	0.0178146	0.00091744700000000005
chr18	31545996	31546089	16809159	0	+	0.419355	(0.39,0.42]	chr18	1386480	4	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.3855	2.563965	2.74243	0.0049615	0.00369167	0.0368419	0.030936
chr6	117707112	117707210	7353883	0	+	0.408163	(0.39,0.42]	chr6	565154	2	UTR3	UTR3:EXON_MRNA	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.3855	2.563965	2.74243	0.0049615	0.00369167	0.0368419	0.030936
chr12	46207528	46207621	13313640	0	-	0.505376	(0.49,0.53]	chr12	1043524	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	50	2	2.28265	2.56379	2.84493	0.00205195	5.26587e-4	0.0201238	0.00679103
chr11	33171435	33171490	12343762	0	-	0.418182	(0.39,0.42]	chr11	953948	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206808.1	ENST00000384081.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	4	25	2	2.34349	2.563745	2.784	0.0169272	0.00261393	0.0890655	0.0230705
chr19	2037928	2038027	17421448	0	-	0.50505	(0.49,0.53]	chr19	1453118	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	38	2	1.37284	2.56372	3.7546	0.0455304	2.09468e-4	0.175554	0.00327655
chr3	41225793	41225861	3432476	0	+	0.367647	(0.36,0.39]	chr3	298540	3	CDS	CDS:EXON_MRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	2.28639	2.56364	2.84089	0.0128123	0.00768469	0.0719798	0.050396
chr7	123545610	123545676	9045657	0	-	0.378788	(0.36,0.39]	chr7	690533	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000459880.1:ENST00000466896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	43	2	1.47979	2.56355	3.64731	0.0319856	2.27851e-5	0.135058	5.41358e-4
chr12	53382865	53382960	12885893	0	+	0.463158	(0.455,0.49]	chr12	1002309	9	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.52734	2.5630100000000002	2.59868	0.00792433	3.61596e-4	0.0523592	0.00506298
chr22	20889723	20889823	18299838	0	+	0.38	(0.36,0.39]	chr22	1553630	20	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.10159	2.56278	3.02397	0.00841765	0.00674398	0.0543584	0.0461258
chr22	21789406	21789505	18442652	0	-	0.383838	(0.36,0.39]	chr22	1572534	2	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	9	45	2	1.86118	2.56266	3.26414	0.0121414	4.42599e-5	0.0699297	9.29425e-4
chr17	32224921	32225015	16199276	0	+	0.361702	(0.36,0.39]	chr17	1308042	3	UTR3	UTR3:EXON_MRNA:INTRON	RHOT1	ENSG00000126858.19	ENST00000333942.10:ENST00000358365.7:ENST00000583994.5:ENST00000545287.7:ENST00000354266.7:ENST00000581031.5:ENST00000578205.5:ENST00000394692.6:ENST00000580392.5:ENST00000584692.1:ENST00000584852.1:ENST00000582586.1:ENST00000646284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	33	2	2.29974	2.5622749999999996	2.82481	0.00926291	6.14057e-4	0.0586162	0.00765639
chr16	2766585	2766684	15494941	0	+	0.59596	(0.59,1]	chr16	1227802	52	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	21	231	2	1.89955	2.562245	3.22494	0.00180628	9.6369e-6	0.0175103	2.94282e-4
chr12	54239059	54239159	13342917	0	-	0.46	(0.455,0.49]	chr12	1049602	77	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	12	66	2	2.09865	2.5622249999999998	3.0258	0.00151642	6.21073e-5	0.0153857	0.00134149
chr10	30338026	30338126	11436304	0	-	0.49	(0.455,0.49]	chr10	871981	6	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	42	2	2.53963	2.56221	2.58479	0.00200187	0.00112063	0.0189555	0.0128408
chr1	21836869	21836937	890768	0	-	0.617647	(0.59,1]	chr1	92288	2	CDS	CDS:EXON_MRNA:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000471322.2:ENST00000374676.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	102	2	2.3791	2.5621600000000004	2.74522	0.00271535	5.30049e-4	0.0237499	0.00739367
chr16	28837062	28837149	15620409	0	+	0.436782	(0.42,0.455]	chr16	1238485	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000564162.1:ENST00000567024.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	21	126	2	2.04391	2.5620149999999997	3.08012	9.94209e-4	6.70379e-7	0.0118266	2.8446e-5
chr17	38918877	38918977	16218413	0	+	0.58	(0.53,0.59]	chr17	1310821	2	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	92	2	2.49063	2.5619300000000003	2.63323	2.91603e-4	1.46903e-4	0.00463214	0.00246392
chr12	2799849	2799940	12696832	0	+	0.395604	(0.39,0.42]	chr12	984963	1	CDS	CDS:EXON_MRNA	FKBP4	ENSG00000004478.8	ENST00000001008.6:ENST00000543037.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	25	2	1.79377	2.561785	3.3298	0.0299302	0.00165391	0.129773	0.0163614
chr22	19514817	19514887	18295725	0	+	0.571429	(0.53,0.59]	chr22	1552799	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	2.4751	2.5617349999999997	2.64837	0.0199467	7.16255e-4	0.0984041	0.00901405
chr3	184173318	184173416	3948137	0	+	0.459184	(0.455,0.49]	chr3	331990	27	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.99447	2.56145	3.12843	0.012436	0.00392855	0.0712518	0.0322851
chr12	12876020	12876107	12740965	0	+	0.482759	(0.455,0.49]	chr12	990416	7	EXON_PSEUDO	EXON_PSEUDO	RPL13AP20	ENSG00000234498.3	ENST00000459725.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	34	2	1.79605	2.56121	3.32637	0.0427708	1.64563e-4	0.168094	0.00269001
chr2	47162338	47162392	2631465	0	-	0.37037	(0.36,0.39]	chr2	236928	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	38	2	2.42114	2.5610549999999996	2.70097	0.00564641	4.47648e-4	0.0422191	0.00602369
chr3	128644918	128644983	4441566	0	-	0.369231	(0.36,0.39]	chr3	369045	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	60	2	1.54838	2.561	3.57362	0.038399	1.06281e-6	0.15648	4.21166e-5
chr3	31624913	31624999	3392379	0	+	0.372093	(0.36,0.39]	chr3	295074	1	CDS	CDS:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	10	59	2	1.89703	2.5609450000000002	3.22486	0.0150863	5.21107e-6	0.0821417	1.60138e-4
chr19	18306990	18307085	17499067	0	-	0.568421	(0.53,0.59]	chr19	1468052	9	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	79	2	2.41538	2.560805	2.70623	5.71292e-4	1.88417e-4	0.00724987	0.0032588
chr22	20933778	20933871	18300019	0	+	0.483871	(0.455,0.49]	chr22	1553639	1	CDS	CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	106	2	1.71598	2.56079	3.4056	0.0069036	2.15248e-7	0.0471249	1.08055e-5
chr13	30462624	30462712	13949072	0	-	0.477273	(0.455,0.49]	chr13	1094862	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000490788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	46	2	1.62103	2.560755	3.50048	0.0186223	5.99835e-5	0.0952021	0.00130886
chr1	114726210	114726298	1239687	0	-	0.363636	(0.36,0.39]	chr1	121378	1	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000483030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	78	2	2.41973	2.560735	2.70174	2.69589e-4	8.17833e-5	0.00434657	0.00154716
chr1	26281222	26281322	108920	0	+	0.51	(0.49,0.53]	chr1	12976	2	UTR3	UTR3:EXON_MRNA	SH3BGRL3	ENSG00000142669.15	ENST00000270792.10:ENST00000319041.6	protein_coding	protein_coding	protein_coding	protein_coding	10	63	2	2.49297	2.56065	2.62833	6.69943e-4	3.00556e-4	0.0087033	0.00438757
chr4	70979127	70979209	4878883	0	+	0.402439	(0.39,0.42]	chr4	401899	1	CDS	CDS:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	2.34349	2.560645	2.7778	0.0169272	2.79638e-4	0.0890655	0.0041355
chr5	151811100	151811199	6299837	0	+	0.40404	(0.39,0.42]	chr5	491960	57	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	69	2	2.41932	2.5603	2.70128	5.30354e-4	1.55594e-4	0.00739546	0.00259062
chr6	85624044	85624112	7825895	0	-	0.352941	(0.33,0.36]	chr6	599586	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	21	2	2.47163	2.56007	2.64851	0.0129725	0.00492353	0.0724783	0.0366648
chr12	119687870	119687963	13576781	0	-	0.408602	(0.39,0.42]	chr12	1068233	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.37759	2.56001	2.74243	0.0428865	0.00369167	0.161091	0.030936
chr1	202728158	202728255	1451706	0	-	0.329897	(0.29,0.33]	chr1	145774	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	30	2	1.71387	2.55968	3.40549	0.0355849	1.12275e-4	0.147262	0.00199494
chr6	135218775	135218874	7415105	0	+	0.323232	(0.29,0.33]	chr6	568361	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	64	2	2.4676	2.55925	2.6509	1.80002e-4	9.33798e-5	0.00291129	0.00186503
chr2	28799401	28799499	1702892	0	+	0.306122	(0.29,0.33]	chr2	167042	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	40	2	1.99403	2.55924	3.12445	0.0202925	3.32826e-5	0.098158	7.35011e-4
chr12	56164559	56164645	13349054	0	-	0.534884	(0.53,0.59]	chr12	1050709	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-977G19.5:SMARCC2	ENSG00000258199.1:ENSG00000139613.12	ENST00000553176.1:ENST00000550164.6:ENST00000394023.7:ENST00000347471.8:ENST00000267064.8:ENST00000552674.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	3	25	2	2.47	2.5591850000000003	2.64837	0.0199467	0.0089333	0.0984041	0.0567495
chr19	12813366	12813466	17237482	0	+	0.57	(0.53,0.59]	chr19	1420822	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	THSD8:RNASEH2A	ENSG00000284491.3:ENSG00000104889.7	ENST00000639767.2:ENST00000221486.6:ENST00000593017.2:ENST00000643757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	25	2	1.90953	2.559135	3.20874	0.0517711	0.00278422	0.193577	0.0241009
chr1	52404334	52404423	1019018	0	-	0.539326	(0.53,0.59]	chr1	105651	2	UTR5	UTR5:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	7	43	2	1.99466	2.55903	3.1234	0.0049448	0.00390623	0.0367601	0.0322851
chr21	36376345	36376441	18111963	0	+	0.260417	[0,0.29]	chr21	1535575	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000546482.5:ENST00000549948.5:ENST00000551788.5:ENST00000551367.5:ENST00000552581.5:ENST00000547657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	25	2	2.50979	2.558815	2.60784	0.00608277	0.00209281	0.0438976	0.0196502
chr7	135577795	135577871	8552594	0	+	0.486842	(0.455,0.49]	chr7	652707	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.04847	2.558805	3.06914	0.0192065	6.6649e-4	0.0943643	0.00820018
chr11	125644090	125644179	12194798	0	+	0.449438	(0.42,0.455]	chr11	940864	1	CDS	CDS:EXON_MRNA	CHEK1	ENSG00000149554.14	ENST00000438015.7:ENST00000427383.6:ENST00000428830.6:ENST00000544373.5:ENST00000278916.8:ENST00000532449.6:ENST00000534070.5:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	1.87908	2.558735	3.23839	0.0189336	2.92986e-4	0.0958835	0.00464297
chr6	44113842	44113942	7710206	0	-	0.57	(0.53,0.59]	chr6	591820	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPL14	ENSG00000180992.7	ENST00000372014.5	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.45844	2.55869	2.65894	0.0193255	0.00930921	0.0943643	0.0587563
chrX	47636547	47636641	19060920	0	-	0.457447	(0.455,0.49]	chrX	1619983	12	UTR3	UTR3:EXON_MRNA	ELK1	ENSG00000126767.18	ENST00000376983.8:ENST00000247161.7	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.27492	2.55847	2.84202	0.0193827	5.41187e-4	0.0943643	0.00689416
chr7	128307617	128307716	9058585	0	-	0.333333	(0.33,0.36]	chr7	691245	101	UTR3	UTR3:EXON_MRNA	RBM28	ENSG00000106344.8	ENST00000223073.6	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.54538	2.5584550000000004	2.57153	0.00330025	0.00259294	0.028478	0.0229695
chr19	41306941	41307035	17334337	0	+	0.404255	(0.39,0.42]	chr19	1436801	5	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000602130.5:ENST00000617305.4:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	2.2627100000000002	2.5584350000000002	2.85416	0.0192666	0.00225069	0.0966228	0.021386
chr20	34089444	34089539	17945934	0	-	0.326316	(0.29,0.33]	chr20	1519882	13	UTR3	UTR3:EXON_MRNA	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.24226	2.5584249999999997	2.87459	0.0306054	1.72733e-4	0.130226	0.00280648
chr19	54174043	54174143	17627657	0	-	0.71	(0.59,1]	chr19	1488016	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	77	2	2.4986	2.5584100000000003	2.61822	0.00349906	0.00201173	0.0296494	0.019022
chr12	21644021	21644108	13236696	0	-	0.482759	(0.455,0.49]	chr12	1037968	2	CDS	CDS:EXON_MRNA	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000396075.5:ENST00000470280.1:ENST00000450584.5:ENST00000539782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	112	2	2.16519	2.558305	2.95142	1.4425e-4	3.9461e-5	0.00242525	9.44465e-4
chr1	151052639	151052737	1291631	0	-	0.306122	(0.29,0.33]	chr1	128778	18	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	79	2	2.31544	2.558285	2.80113	1.35489e-4	3.09022e-5	0.00231202	7.62166e-4
chr3	139379379	139379466	4479703	0	-	0.448276	(0.42,0.455]	chr3	372284	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2:ENST00000515006.5:ENST00000512153.5:ENST00000513274.5:ENST00000510491.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	30	2	1.58962	2.5581050000000003	3.52659	0.0352	6.87022e-4	0.142054	0.00876781
chr5	180575982	180576081	6416553	0	+	0.292929	(0.29,0.33]	chr5	499475	19	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	8	34	2	2.50329	2.558085	2.61288	0.00142661	0.00138819	0.0149724	0.0146595
chr5	72208188	72208286	6027879	0	+	0.397959	(0.39,0.42]	chr5	472574	31	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.92026	2.55807	3.19588	0.00726512	0.00321212	0.0487474	0.0280721
chr17	1650758	1650801	16401260	0	-	0.674419	(0.59,1]	chr17	1334823	1	CDS	CDS:UTR3:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000571958.1:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.5215	2.558055	2.59461	0.032241	0.0259455	0.135671	0.117079
chr22	36467708	36467803	18499232	0	-	0.621053	(0.59,1]	chr22	1578324	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TXN2	ENSG00000100348.10	ENST00000216185.7:ENST00000416967.1:ENST00000487725.1:ENST00000403313.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.5215	2.558055	2.59461	0.032241	0.0259455	0.135671	0.117079
chr7	102569834	102569924	8955612	0	-	0.411111	(0.39,0.42]	chr7	685222	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	POLR2J3:RP11-514P8.7	ENSG00000168255.20:ENSG00000270249.2:ENSG00000285437.1	ENST00000489144.5:ENST00000464525.5:ENST00000379340.9:ENST00000486319.5:ENST00000513506.6:ENST00000508848.5:ENST00000506060.5:ENST00000502415.5:ENST00000514917.3:ENST00000507355.5:ENST00000608621.5:ENST00000511313.5:ENST00000504157.5:ENST00000613744.4:ENST00000508910.5:ENST00000621093.4:ENST00000443430.2:ENST00000513438.1:ENST00000504101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	46	2	2.24454	2.557875	2.87121	0.00181306	4.65001e-4	0.0183913	0.00615886
chr4	67641150	67641228	5452902	0	-	0.358974	(0.33,0.36]	chr4	436112	1	CDS	CDS:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000505673.2	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.13965	2.557855	2.97606	0.0297101	0.00871774	0.129986	0.0558165
chr3	184307440	184307525	3949088	0	+	0.458824	(0.455,0.49]	chr3	332349	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5:ENST00000473991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	31	2	2.35972	2.5577949999999996	2.75587	0.0058634	0.00293507	0.0427941	0.025146
chr3	20169281	20169380	4076338	0	-	0.40404	(0.39,0.42]	chr3	341644	77	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.49426	2.557785	2.62131	0.0085468	0.00609677	0.0551026	0.0439136
chr3	150741308	150741401	4518344	0	-	0.408602	(0.39,0.42]	chr3	375083	3	UTR3	UTR3:EXON_MRNA	SIAH2	ENSG00000181788.4	ENST00000312960.4	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.49426	2.557785	2.62131	0.0085468	0.00609677	0.0551026	0.0439136
chr2	231456076	231456159	3226723	0	-	0.409639	(0.39,0.42]	chr2	283845	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000466274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	60	2	2.48229	2.5575200000000002	2.63275	8.62602e-4	1.55045e-4	0.0105966	0.00258327
chr6	136278684	136278776	7982510	0	-	0.380435	(0.36,0.39]	chr6	610361	10	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	34	2	2.16717	2.55749	2.94781	0.0152504	3.10006e-4	0.0828908	0.0044733
chr5	41920843	41920942	5952065	0	+	0.383838	(0.36,0.39]	chr5	466512	22	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.48922	2.557435	2.62565	0.0219469	0.0110399	0.103959	0.0652374
chr4	98901875	98901928	5547903	0	-	0.415094	(0.39,0.42]	chr4	443118	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	1.99911	2.5572999999999997	3.11549	0.0477207	0.00403491	0.17993	0.032143
chr18	60149673	60149772	16913799	0	+	0.444444	(0.42,0.455]	chr18	1392147	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-795H16.3:RPS3AP49	ENSG00000267686.2:ENSG00000242060.1	ENST00000588794.1:ENST00000472161.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	29	2	2.36247	2.55713	2.75179	0.0462889	8.66526e-4	0.176878	0.0100799
chr6	34244980	34245076	7124344	0	+	0.666667	(0.59,1]	chr6	548262	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	134	1581	2	2.50011	2.55712	2.61413	1.14305e-5	3.07465e-6	3.3808e-4	1.03124e-4
chr6	27893462	27893562	7105349	0	+	0.59	(0.53,0.59]	chr6	543492	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC17	ENSG00000274641.2	ENST00000616182.2	protein_coding	protein_coding	protein_coding	protein_coding	8	59	2	2.47886	2.5571099999999998	2.63536	0.00138105	6.09389e-4	0.014307	0.00818575
chrX	24064200	24064267	18616549	0	+	0.402985	(0.39,0.42]	chrX	1589812	1	CDS	CDS:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	13	67	2	2.20389	2.557085	2.91028	0.00100255	5.0472e-5	0.0119197	0.0010363
chr16	28845313	28845396	15907786	0	-	0.566265	(0.53,0.59]	chr16	1273905	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	40	2	1.88327	2.55706	3.2308500000000002	0.0298124	2.81517e-4	0.129773	0.00415519
chr12	95467675	95467768	13481512	0	-	0.526882	(0.49,0.53]	chr12	1060100	4	EXON_PSEUDO	EXON_PSEUDO	RP11-490G8.1	ENSG00000241556.1	ENST00000478358.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	36	2	1.78308	2.557035	3.33099	0.0425234	1.59567e-4	0.167547	0.00263091
chr3	47916609	47916703	4164425	0	-	0.43617	(0.42,0.455]	chr3	348579	8	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	2.05515	2.5570199999999996	3.05889	0.017518	0.00524205	0.0924156	0.0399155
chr9	35714573	35714630	10639655	0	-	0.649123	(0.59,1]	chr9	805090	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	3	41	2	2.50322	2.55698	2.61074	0.025486	0.00863444	0.117089	0.0556009
chr10	27142386	27142485	11423611	0	-	0.373737	(0.36,0.39]	chr10	870978	1	CDS	CDS:EXON_MRNA:INTRON	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	12	58	2	2.32673	2.5568549999999997	2.78698	4.13751e-4	3.67531e-4	0.00562243	0.00552242
chr11	119091412	119091469	12162000	0	+	0.631579	(0.59,1]	chr11	937729	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.72057	2.5567450000000003	3.39292	0.0314051	0.00192565	0.131369	0.0191769
chr10	21703000	21703100	10961515	0	+	0.38	(0.36,0.39]	chr10	834141	141	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000420525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	17	2	2.32678	2.556685	2.78659	0.0193538	0.0132982	0.0943643	0.0740932
chr5	131391890	131391990	6221749	0	+	0.38	(0.36,0.39]	chr5	484085	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.32678	2.556685	2.78659	0.0193538	0.0132982	0.0943643	0.0740932
chr6	107901369	107901443	7881867	0	-	0.378378	(0.36,0.39]	chr6	603382	1	CDS	CDS:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000466419.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.32678	2.556685	2.78659	0.0193538	0.0132982	0.0943643	0.0740932
chr3	53240250	53240348	4189151	0	-	0.632653	(0.59,1]	chr3	353822	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000487660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	100	2	1.94138	2.556645	3.17191	0.0100942	1.5194e-4	0.0625146	0.00276208
chr6	125276145	125276243	7932922	0	-	0.469388	(0.455,0.49]	chr6	607259	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HDDC2	ENSG00000111906.18	ENST00000608456.5:ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000609021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	69	2	2.46921	2.5565350000000002	2.64386	2.93041e-4	2.55246e-4	0.00464297	0.00383691
chr1	205716294	205716393	1462018	0	-	0.282828	[0,0.29]	chr1	147460	36	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	2.25155	2.556505	2.86146	0.00495706	1.88656e-4	0.0368301	0.0032588
chr11	57816896	57816994	11953245	0	+	0.489796	(0.455,0.49]	chr11	914890	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	2.27492	2.55642	2.83792	0.0193827	0.0110512	0.0943643	0.0665375
chr15	76292430	76292504	15382224	0	-	0.459459	(0.455,0.49]	chr15	1216378	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1:ENST00000560309.5:ENST00000561092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.27492	2.55642	2.83792	0.0193827	0.0110512	0.0943643	0.0665375
chr15	90974190	90974246	15439219	0	-	0.482143	(0.455,0.49]	chr15	1221357	2	CDS	CDS:UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000442656.6:ENST00000559828.1:ENST00000559326.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.27492	2.55642	2.83792	0.0193827	0.0110512	0.0943643	0.0665375
chr9	97648007	97648079	10380650	0	+	0.458333	(0.455,0.49]	chr9	781744	1	CDS	CDS:UTR3:EXON_MRNA	NCBP1	ENSG00000136937.13	ENST00000478100.3:ENST00000375147.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.27492	2.55642	2.83792	0.0193827	0.0110512	0.0943643	0.0665375
chr7	156688029	156688110	9145679	0	-	0.432099	(0.42,0.455]	chr7	699167	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000461603.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	31	2	2.40664	2.556375	2.70611	0.00445101	0.00397496	0.0340751	0.0322851
chr11	63758215	63758275	11976849	0	+	0.3	(0.29,0.33]	chr11	918382	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	33	2	1.99403	2.556225	3.11842	0.0202925	1.21194e-4	0.098158	0.00210755
chr17	78171836	78171918	16367718	0	+	0.621951	(0.59,1]	chr17	1329565	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	66	2	2.42324	2.5562199999999997	2.6892	0.0116918	0.00147019	0.0686664	0.0149767
chr2	54972186	54972282	2666095	0	-	0.302083	(0.29,0.33]	chr2	238467	1	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5	protein_coding	protein_coding	protein_coding	protein_coding	20	83	2	2.43903	2.555475	2.67192	2.43559e-4	3.34743e-5	0.00399705	7.3915e-4
chr19	15835566	15835661	17246592	0	+	0.442105	(0.42,0.455]	chr19	1422765	9	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000655708.1:ENST00000642256.2:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1	lncRNA	lncRNA	lncRNA	lncRNA	3	21	2	2.54043	2.55547	2.57051	0.0265466	0.00705852	0.120071	0.047732
chr3	196362588	196362687	4665092	0	-	0.434343	(0.42,0.455]	chr3	385881	4	CDS	CDS:UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.54043	2.55547	2.57051	0.0265466	0.00705852	0.120071	0.047732
chr5	138424074	138424163	6244530	0	+	0.449438	(0.42,0.455]	chr5	486562	1	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5:ENST00000505756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.54043	2.55547	2.57051	0.0265466	0.00705852	0.120071	0.047732
chr8	82291623	82291717	9917210	0	-	0.510638	(0.49,0.53]	chr8	749084	1	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P4	ENSG00000206228.4	ENST00000509706.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	28	2	2.49797	2.555435	2.6129	0.00843736	0.0052746	0.0546021	0.0389109
chr19	22694823	22694923	17516319	0	-	0.54	(0.53,0.59]	chr19	1470205	230	INTRON	INTRON	CTC-457E21.9	ENSG00000268981.5	ENST00000601860.5	lncRNA	lncRNA	lncRNA	lncRNA	630	4527	2	1.98172	2.555285	3.12885	2.75319e-5	6.16668e-10	6.9883e-4	6.81699e-8
chr1	241506085	241506168	1577456	0	-	0.373494	(0.36,0.39]	chr1	157525	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	48	2	2.46506	2.55524	2.64542	6.12028e-4	5.97135e-4	0.0080833	0.00763546
chr22	16614429	16614527	18285852	0	+	0.479592	(0.455,0.49]	chr22	1551656	20	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000588548.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	21	114	2	2.15236	2.5551899999999996	2.95802	3.10438e-4	4.69225e-6	0.0044792	1.625e-4
chr12	120546502	120546601	13116748	0	+	0.464646	(0.455,0.49]	chr12	1023847	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000551139.6:ENST00000536869.5:ENST00000537997.1:ENST00000543578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	24	2	1.98188	2.555155	3.12843	0.0226804	0.00392855	0.105116	0.0322851
chr16	88793	88890	15815331	0	-	0.618557	(0.59,1]	chr16	1259922	2	CDS	CDS:UTR3:EXON_MRNA	NPRL3	ENSG00000103148.17	ENST00000610509.1:ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	30	2	2.42639	2.555155	2.68392	0.0409084	0.0202468	0.163285	0.0984041
chr17	48542984	48543067	16577777	0	-	0.626506	(0.59,1]	chr17	1361781	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HOXB2	ENSG00000173917.11	ENST00000504772.3:ENST00000330070.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	30	2	2.42639	2.555155	2.68392	0.0409084	0.0202468	0.163285	0.0984041
chr8	29060382	29060482	9250762	0	+	0.49	(0.455,0.49]	chr8	708717	38	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	24	2	1.98188	2.555155	3.12843	0.0226804	0.00392855	0.105116	0.0322851
chr9	37422695	37422750	10255240	0	+	0.690909	(0.59,1]	chr9	771670	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GRHPR	ENSG00000137106.18	ENST00000493368.5:ENST00000318158.11:ENST00000460882.5:ENST00000377824.8:ENST00000487399.5:ENST00000491488.5:ENST00000607784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	30	2	2.42639	2.555155	2.68392	0.0409084	0.0202468	0.163285	0.0984041
chr20	32143043	32143105	17752395	0	+	0.629032	(0.59,1]	chr20	1498476	2	CDS	CDS:EXON_MRNA	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	2	30	2	2.4994	2.5550699999999997	2.61074	0.0333573	0.025486	0.137922	0.117089
chr3	47846350	47846443	3456905	0	+	0.645161	(0.59,1]	chr3	301424	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1:ENST00000461905.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	30	2	2.4994	2.5550699999999997	2.61074	0.0333573	0.025486	0.137922	0.117089
chr13	30465866	30465938	13949108	0	-	0.555556	(0.53,0.59]	chr13	1094878	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	36	2	2.33084	2.5550249999999997	2.77921	0.0132865	0.00283321	0.0740932	0.0252865
chr22	20582903	20582967	18299156	0	+	0.59375	(0.59,1]	chr22	1553496	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1:ENST00000476187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	55	2	1.82129	2.55495	3.28861	0.0227814	0.0028753	0.105293	0.0256141
chr1	87105693	87105793	341424	0	+	0.3	(0.29,0.33]	chr1	33632	11	UTR3	UTR3:EXON_MRNA:INTRON	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.18913	2.5548900000000003	2.92065	0.0117842	0.00629431	0.0686664	0.044701
chr12	120461757	120461844	13580769	0	-	0.321839	(0.29,0.33]	chr12	1069056	2	UTR3	UTR3:EXON_MRNA	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000548326.1:ENST00000548792.1:ENST00000603963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	2.18913	2.5548900000000003	2.92065	0.0117842	0.00629431	0.0686664	0.044701
chr17	18208882	18208980	16150147	0	+	0.581633	(0.53,0.59]	chr17	1301927	6	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000541285.1:ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	44	2	2.0892	2.55487	3.02054	0.00577011	0.00316986	0.0426551	0.0267094
chr10	28608344	28608431	10990508	0	+	0.356322	(0.33,0.36]	chr10	835881	2	CDS	CDS:UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6:ENST00000495268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	37	2	2.48427	2.5548349999999997	2.6254	0.00150101	0.00106803	0.0152367	0.0124232
chr7	72942232	72942331	8330197	0	+	0.666667	(0.59,1]	chr7	634054	5	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	5	66	2	2.50322	2.5548	2.60638	0.00863444	0.00223524	0.0556009	0.021278
chrX	119469757	119469854	18841515	0	+	0.505155	(0.49,0.53]	chrX	1605559	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9:ENST00000460013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	85	2	2.23125	2.55455	2.87785	7.11284e-4	2.9634e-5	0.00856	7.34601e-4
chr21	29056397	29056474	18201935	0	-	0.324675	(0.29,0.33]	chr21	1544698	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT8	ENSG00000156261.13	ENST00000432178.5:ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	80	2	1.79223	2.554415	3.3166	0.0151293	2.13006e-7	0.0823648	1.07266e-5
chr5	31553097	31553195	5919690	0	+	0.316327	(0.29,0.33]	chr5	463928	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	43	2	2.53635	2.55427	2.57219	9.93325e-4	3.3084e-4	0.0111014	0.00505107
chr2	96278628	96278711	2790296	0	-	0.578313	(0.53,0.59]	chr2	248711	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000484372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	32	2	2.54844	2.55423	2.56002	0.00663226	0.00634904	0.0461575	0.0446708
chr21	42908863	42908921	18133918	0	+	0.568965	(0.53,0.59]	chr21	1538016	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	32	2	2.54844	2.55423	2.56002	0.00663226	0.00634904	0.0461575	0.0446708
chr6	87701584	87701684	7828224	0	-	0.65	(0.59,1]	chr6	599867	1	CDS_START	CDS_START:CDS:EXON_MRNA	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.25872	2.55408	2.84944	0.0193473	0.0128238	0.0969537	0.0719798
chr11	62881205	62881288	11974403	0	+	0.686747	(0.59,1]	chr11	918032	2	CDS	CDS:EXON_MRNA	SLC3A2	ENSG00000168003.18	ENST00000680729.1:ENST00000680002.1:ENST00000681467.1:ENST00000377890.6:ENST00000538084.2:ENST00000681569.1:ENST00000680725.1:ENST00000377891.6:ENST00000377889.6:ENST00000681215.1:ENST00000535296.5:ENST00000680631.1:ENST00000544377.2:ENST00000680610.1:ENST00000680297.1:ENST00000680134.1:ENST00000681232.1:ENST00000681657.1:ENST00000541425.6:ENST00000679908.1:ENST00000681563.1:ENST00000338663.12:ENST00000680654.1:ENST00000681107.1:ENST00000539458.1:ENST00000541372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.11894	2.55403	2.9891200000000002	0.0293157	0.00823979	0.128478	0.0540283
chr20	50894318	50894415	18006326	0	-	0.350515	(0.33,0.36]	chr20	1526245	4	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	49	2	2.3136	2.553935	2.79427	0.00110072	1.77242e-4	0.0119958	0.0030964400000000002
chr7	128769954	128770052	8521856	0	+	0.387755	(0.36,0.39]	chr7	650198	9	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	19	92	2	2.48122	2.5539300000000003	2.62664	1.33565e-4	2.50278e-5	0.00248469	5.82427e-4
chr1	1052689	1052786	2421	0	+	0.515464	(0.49,0.53]	chr1	579	8	EXON_MRNA	EXON_MRNA:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	29	2	1.85272	2.55393	3.25514	0.0211739	0.00227467	0.101864	0.0209546
chr6	109376112	109376212	7886746	0	-	0.27	[0,0.29]	chr6	603704	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000324953.9:ENST00000275080.11:ENST00000499860.6:ENST00000512821.5:ENST00000506649.5:ENST00000512212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	24	2	2.31697	2.553795	2.79062	0.00756459	0.00169679	0.0499309	0.01759
chr6	160105874	160105972	7528980	0	+	0.418367	(0.39,0.42]	chr6	574976	9	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.77926	2.553685	3.32811	0.0429531	0.00182819	0.161091	0.0183913
chr19	1440044	1440128	17193290	0	+	0.738095	(0.59,1]	chr19	1412197	2	CDS_START	CDS_START:CDS:EXON_MRNA	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2:ENST00000617694.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	169	2	2.32245	2.553565	2.78468	6.68815e-4	1.30667e-4	0.00820018	0.00243846
chr12	112408242	112408338	13545921	0	-	0.458333	(0.455,0.49]	chr12	1066142	1	CDS	CDS:UTR5:EXON_MRNA	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000424576.6:ENST00000546368.2:ENST00000550238.1:ENST00000551041.6:ENST00000552455.5:ENST00000550566.6:ENST00000549847.5:ENST00000551291.6:ENST00000553213.2:ENST00000549562.1:ENST00000548343.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	105	2	2.38992	2.55355	2.71718	1.02231e-4	2.97392e-5	0.00199025	6.72989e-4
chr7	32868953	32869050	8759796	0	-	0.340206	(0.33,0.36]	chr7	668168	9	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.11	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	2.32576	2.553355	2.78095	0.00388614	0.0017547	0.0322851	0.0171423
chr10	11920217	11920315	11369099	0	-	0.418367	(0.39,0.42]	chr10	867005	3	UTR3	UTR3:EXON_MRNA	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.25245	2.553305	2.85416	0.00427758	0.00225069	0.0332717	0.021386
chr9	83973342	83973399	10712923	0	-	0.421053	(0.42,0.455]	chr9	810512	2	CDS	CDS:UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000376256.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	50	2	1.79613	2.55324	3.31035	0.0121028	3.43313e-5	0.0701019	8.37726e-4
chr14	21211122	21211222	14520517	0	-	0.4	(0.39,0.42]	chr14	1137229	21	UTR3	UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000553444.1:ENST00000556897.5:ENST00000420743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	189	2	2.37551	2.553065	2.73062	2.24501e-5	1.00721e-6	5.34673e-4	4.45909e-5
chr8	140516105	140516200	9641878	0	+	0.347368	(0.33,0.36]	chr8	730104	10	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	19	82	2	2.38398	2.5529200000000003	2.72186	1.4508e-4	2.70138e-5	0.00243814	6.89365e-4
chr12	30630366	30630464	13276773	0	-	0.27551	[0,0.29]	chr12	1040595	15	UTR3	UTR3:EXON_MRNA	IPO8	ENSG00000133704.10	ENST00000256079.9	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.28104	2.552735	2.82443	0.0202028	0.0180803	0.0984041	0.0920398
chr8	53967715	53967812	9832426	0	-	0.237113	[0,0.29]	chr8	743907	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	67	2	2.50385	2.552605	2.60136	5.17394e-4	3.22609e-5	0.00722535	7.14846e-4
chr12	55968108	55968169	12896892	0	+	0.47541	(0.455,0.49]	chr12	1003782	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000555357.1:ENST00000554619.5:ENST00000556276.5:ENST00000556656.5:ENST00000556146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	1.90433	2.55251	3.20069	0.0185466	0.00285821	0.0932453	0.0245841
chr15	49134339	49134426	15267182	0	-	0.390805	(0.39,0.42]	chr15	1204438	1	CDS	CDS:EXON_MRNA	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000559016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	41	2	2.14714	2.5525	2.95786	0.00248955	0.00138212	0.0224387	0.0149186
chr20	53576114	53576211	18015902	0	-	0.484536	(0.455,0.49]	chr20	1526885	5	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.46624	2.55248	2.63872	0.0094145	0.00510378	0.0592633	0.0390492
chr7	135573653	135573739	8552549	0	+	0.476744	(0.455,0.49]	chr7	652691	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000489493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	1.80094	2.55239	3.30384	0.0265942	0.00184955	0.120205	0.0178046
chr5	41919653	41919753	5952053	0	+	0.44	(0.42,0.455]	chr5	466512	10	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.16214	2.552385	2.94263	0.00766873	0.00696724	0.0503696	0.0474632
chr6	31828145	31828241	7116688	0	+	0.604167	(0.59,1]	chr6	546209	2	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	14	164	2	2.27915	2.5523800000000003	2.82561	6.43788e-4	1.79794e-4	0.00799509	0.0031384
chr8	141431232	141431326	9643445	0	+	0.712766	(0.59,1]	chr8	730369	3	UTR3	UTR3:EXON_MRNA	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000329397.6:ENST00000349124.3:ENST00000680615.1:ENST00000681443.1:ENST00000524028.1	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.42381	2.551885	2.67996	0.00470478	0.00452614	0.0363963	0.0346018
chr1	185311246	185311322	1410747	0	-	0.315789	(0.29,0.33]	chr1	142656	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	IVNS1ABP	ENSG00000116679.16	ENST00000367498.8:ENST00000459929.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	1.78695	2.55174	3.31653	0.0289406	0.00261621	0.127328	0.0238929
chr12	101393988	101394085	13506197	0	-	0.350515	(0.33,0.36]	chr12	1061580	10	UTR3	UTR3:EXON_MRNA	ARL1	ENSG00000120805.14	ENST00000261636.13	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	2.31697	2.5517149999999997	2.78646	0.00966431	2.81934e-4	0.0606263	0.00415762
chr1	228097851	228097913	744031	0	+	0.612903	(0.59,1]	chr1	75097	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000482962.5:ENST00000497165.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	104	2	1.98097	2.55154	3.12211	0.00354903	7.51607e-4	0.0291916	0.00938882
chr1	161518148	161518246	500531	0	+	0.387755	(0.36,0.39]	chr1	54251	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5:ENST00000537821.2:ENST00000461298.1:ENST00000459885.1:ENST00000486608.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	8	39	2	1.89391	2.55139	3.20887	0.0121625	8.51229e-5	0.0701019	0.00174655
chr10	32900574	32900673	11443879	0	-	0.373737	(0.36,0.39]	chr10	872611	4	UTR3	UTR3:EXON_MRNA:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	78	2	2.4131	2.55131	2.68952	3.15787e-4	3.63741e-5	0.00487361	7.94731e-4
chr2	159768146	159768245	2163239	0	+	0.282828	[0,0.29]	chr2	199224	9	UTR3	UTR3:EXON_MRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	2.40124	2.550945	2.70065	0.00258406	5.07704e-4	0.0236624	0.00660682
chr11	118751495	118751593	12625442	0	-	0.306122	(0.29,0.33]	chr11	979521	39	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	85	2	2.21491	2.55086	2.88681	3.46562e-4	3.71419e-6	0.00487164	1.32118e-4
chr2	131491875	131491949	2876997	0	-	0.72973	(0.59,1]	chr2	257668	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MZT2A	ENSG00000173272.16	ENST00000427024.5:ENST00000445782.2:ENST00000410036.2:ENST00000309451.7:ENST00000488586.1:ENST00000491265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	40	2	2.17889	2.550845	2.9228	0.025085	0.00981698	0.116848	0.0612992
chr20	56367079	56367178	17834373	0	+	0.30303	(0.29,0.33]	chr20	1507875	9	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.99403	2.55082	3.10761	0.0202925	6.03128e-4	0.098158	0.00754033
chr20	17187509	17187562	17714462	0	+	0.433962	(0.42,0.455]	chr20	1495230	1	EXON_SMALL	EXON_SMALL	RNU6-27P	ENSG00000251955.1	ENST00000516146.1	snRNA	snRNA	snRNA	snRNA	17	93	2	1.9267	2.550685	3.17467	0.00195521	3.24817e-6	0.0193972	1.07937e-4
chr1	165754230	165754272	1341613	0	-	0.333333	(0.33,0.36]	chr1	137616	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.07736	2.55065	3.02394	0.0442037	8.89743e-4	0.172163	0.0102057
chr1	629306	629406	823321	0	-	0.44	(0.42,0.455]	chr1	81474	3	SS3_PROX	SS3_PROX:INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	20	2	2.50649	2.550555	2.59462	0.0302857	0.0062772	0.130016	0.0445415
chr16	69757843	69757937	15995196	0	-	0.43617	(0.42,0.455]	chr16	1284292	15	EXON_PSEUDO	EXON_PSEUDO	CTD-2033A16.2	ENSG00000260290.2	ENST00000566277.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	20	2	2.50649	2.550555	2.59462	0.0302857	0.0062772	0.130016	0.0445415
chr16	2765403	2765501	15494929	0	+	0.602041	(0.59,1]	chr16	1227802	40	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	10	103	2	1.91133	2.550535	3.18974	0.00484573	5.51091e-4	0.0366328	0.00760492
chr6	26331426	26331526	7647456	0	-	0.57	(0.53,0.59]	chr6	582610	3	SS5_PROX	SS5_PROX:INTRON	RP1-45P21.8	ENSG00000287050.1	ENST00000655687.1	lncRNA	lncRNA	lncRNA	lncRNA	14	99	2	2.44311	2.5504949999999997	2.65788	3.01774e-4	7.69994e-5	0.00439897	0.00161315
chr1	75789257	75789356	299121	0	+	0.393939	(0.39,0.42]	chr1	31259	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000319942.8:ENST00000462042.5:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	49	2	2.27503	2.55047	2.82591	0.0025739	2.09867e-4	0.0235767	0.00327655
chr17	35598435	35598535	16206217	0	+	0.37	(0.36,0.39]	chr17	1309017	1	SS5_PROX	SS5_PROX:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	2.53311	2.550465	2.56782	0.00659672	0.00345778	0.0460001	0.0293796
chr8	144314525	144314622	9652016	0	+	0.484536	(0.455,0.49]	chr8	731933	3	UTR3	UTR3:EXON_MRNA	HSF1	ENSG00000185122.11	ENST00000400780.8:ENST00000528838.6:ENST00000532338.5:ENST00000527328.5:ENST00000614796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	47	2	2.40916	2.5504249999999997	2.69169	0.00126948	0.00105201	0.0139061	0.0116806
chr20	17607443	17607542	17717455	0	+	0.282828	[0,0.29]	chr20	1495347	4	UTR3	UTR3:EXON_MRNA	DSTN	ENSG00000125868.16	ENST00000246069.12:ENST00000474024.5	protein_coding	protein_coding	protein_coding	protein_coding	8	23	2	1.59833	2.550285	3.50224	0.0350112	7.95529e-4	0.145163	0.009356
chr7	127372841	127372941	9057510	0	-	0.28	[0,0.29]	chr7	691096	1	SS5_PROX	SS5_PROX:INTRON	ZNF800	ENSG00000048405.10	ENST00000485577.1:ENST00000265827.8:ENST00000393313.5:ENST00000393312.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	27	2	2.42058	2.55024	2.6799	0.00490744	0.00121378	0.0366648	0.0135383
chr1	32774077	32774176	130815	0	+	0.606061	(0.59,1]	chr1	16163	13	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	5	56	2	2.04605	2.550125	3.0542	0.0103872	0.00663549	0.0640167	0.0456243
chr1	205716591	205716691	1462021	0	-	0.35	(0.33,0.36]	chr1	147460	39	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	21	90	2	2.36997	2.550105	2.7302399999999998	1.27947e-4	1.71912e-5	0.00241206	4.33046e-4
chr6	35573877	35573975	7676280	0	-	0.469388	(0.455,0.49]	chr6	588423	4	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.10347	2.550085	2.9967	0.0313707	0.00650423	0.13127	0.0454205
chr14	20472392	20472477	14171331	0	+	0.458824	(0.455,0.49]	chr14	1109138	2	CDS	CDS:UTR5:EXON_MRNA	PNP	ENSG00000198805.12	ENST00000553418.5:ENST00000361505.10:ENST00000557229.5:ENST00000556293.5:ENST00000554056.5:ENST00000553591.1:ENST00000554065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.40664	2.55004	2.69344	0.0176068	0.0123662	0.0925619	0.0705839
chr19	46788054	46788144	17595598	0	-	0.511111	(0.49,0.53]	chr19	1481430	2	UTR5	UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	2.16719	2.550005	2.93282	0.00606444	3.30011e-4	0.0432957	0.00504024
chr7	156763700	156763795	9146452	0	-	0.463158	(0.455,0.49]	chr7	699235	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5:ENST00000434503.5:ENST00000430278.5:ENST00000434278.5:ENST00000444719.5:ENST00000461469.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	2.12994	2.549595	2.96925	0.0304832	0.00698725	0.130204	0.0473262
chr16	1700812	1700910	15488689	0	+	0.581633	(0.53,0.59]	chr16	1226190	7	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	2.37402	2.5494	2.72478	0.00324675	0.00230837	0.0282494	0.0211205
chr12	51059435	51059533	12876165	0	+	0.479592	(0.455,0.49]	chr12	1000594	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000550929.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	5	31	2	2.35644	2.5492749999999997	2.74211	0.00555877	0.00330545	0.0405952	0.028478
chr4	121819371	121819440	5626293	0	-	0.391304	(0.39,0.42]	chr4	448545	1	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.22707	2.54914	2.87121	0.00574688	4.65001e-4	0.0426551	0.00615886
chr1	235110118	235110215	1560073	0	-	0.494845	(0.49,0.53]	chr1	156012	9	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	2.4971	2.54913	2.60116	0.0056515	6.41492e-4	0.0422191	0.00796686
chr10	69380017	69380095	11096630	0	+	0.589744	(0.53,0.59]	chr10	843771	3	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	34	2	2.0404	2.549075	3.05775	0.0362529	6.94592e-4	0.148525	0.00846751
chr19	12886050	12886142	17471816	0	-	0.717391	(0.59,1]	chr19	1463277	9	CDS	CDS:EXON_MRNA	KLF1	ENSG00000105610.6	ENST00000264834.6	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.32384	2.54901	2.77418	0.0160729	0.0157639	0.0860154	0.0851539
chr6	43054273	43054373	7706876	0	-	0.62	(0.59,1]	chr6	591187	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP1-20C7.7:MRPL2	ENSG00000288564.1:ENSG00000112651.12	ENST00000673761.1:ENST00000388752.8:ENST00000230413.9:ENST00000485654.1:ENST00000489623.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.32384	2.54901	2.77418	0.0160729	0.0157639	0.0860154	0.0851539
chr12	103946867	103946949	13056917	0	+	0.390244	(0.39,0.42]	chr12	1017357	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	79	562	2	1.69347	2.548925	3.40438	0.00111975	8.5129e-11	0.0128408	1.18044e-8
chr5	138198604	138198693	6860963	0	-	0.393258	(0.39,0.42]	chr5	524939	1	CDS	CDS:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7:ENST00000471692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	1.87119	2.548905	3.22662	0.0373134	0.00257296	0.152293	0.0229363
chr6	18224641	18224739	7622463	0	-	0.387755	(0.36,0.39]	chr6	580929	9	UTR3	UTR3:EXON_MRNA	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	111	2	2.04667	2.54887	3.05107	9.44692e-4	7.92575e-7	0.0113546	3.27936e-5
chrX	123908380	123908480	18851076	0	+	0.34	(0.33,0.36]	chrX	1606109	13	UTR3	UTR3:EXON_MRNA	XIAP	ENSG00000101966.13	ENST00000434753.7:ENST00000371199.8:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.93784	2.5488	3.15976	0.0278501	0.00437542	0.123353	0.0340502
chr5	179729742	179729842	6414471	0	+	0.34	(0.33,0.36]	chr5	499211	12	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	44	185	2	2.31904	2.54871	2.77838	1.14518e-5	1.98966e-6	3.08901e-4	7.87541e-5
chr12	6923298	6923398	12715501	0	+	0.35	(0.33,0.36]	chr12	987278	6	UTR3	UTR3:EXON_MRNA	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000545045.6:ENST00000535366.5	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.47163	2.548685	2.62574	0.0129725	0.00176861	0.0724783	0.0172426
chrX	154348769	154348848	19277948	0	-	0.759494	(0.59,1]	chrX	1638235	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	2.24047	2.54864	2.85681	0.00487097	0.00235278	0.0366486	0.0222204
chr12	98549852	98549952	13036884	0	+	0.44	(0.42,0.455]	chr12	1014988	21	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.85887	2.54863	3.23839	0.00931874	2.92986e-4	0.0588091	0.00464297
chr4	24576503	24576590	5359202	0	-	0.425287	(0.42,0.455]	chr4	429884	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000511553.5:ENST00000513092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	42	2	1.85887	2.54863	3.23839	0.00931874	2.92986e-4	0.0588091	0.00464297
chr2	28799696	28799794	1702895	0	+	0.27551	[0,0.29]	chr2	167042	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	44	2	1.42203	2.5486	3.67517	0.0514084	2.4982e-6	0.192759	8.67672e-5
chr13	27667122	27667220	13658561	0	+	0.571429	(0.53,0.59]	chr13	1076549	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	POLR1D	ENSG00000186184.19	ENST00000637180.1:ENST00000399697.7:ENST00000636817.1:ENST00000630983.1:ENST00000465887.2:ENST00000637071.1:ENST00000636952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	39	2	1.97928	2.5485349999999998	3.11779	0.0218546	5.11883e-4	0.104785	0.00664583
chr4	56502531	56502627	4849154	0	+	0.385417	(0.36,0.39]	chr4	399579	8	UTR3	UTR3:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000507126.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	2.46176	2.548485	2.63521	0.00633242	0.00365867	0.0446708	0.0299719
chr12	111485712	111485788	13540186	0	-	0.460526	(0.455,0.49]	chr12	1065296	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1:ENST00000552323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	39	2	2.00242	2.548435	3.09445	0.0074882	6.1765e-4	0.0495195	0.00822794
chr6	18225228	18225326	7622469	0	-	0.306122	(0.29,0.33]	chr6	580929	15	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	47	2	1.75944	2.548405	3.33737	0.0226161	7.07571e-6	0.107244	2.08408e-4
chr2	170993089	170993187	3010654	0	-	0.336735	(0.33,0.36]	chr2	266766	24	UTR3	UTR3:EXON_MRNA	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	24	2	1.62754	2.54831	3.46908	0.0331893	0.00114872	0.137855	0.0130528
chr7	139572029	139572129	9103379	0	-	0.45	(0.42,0.455]	chr7	694628	106	UTR3	UTR3:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.42938	2.548175	2.66697	0.0190326	0.0045028	0.0958835	0.0349711
chr12	56159658	56159730	12898534	0	+	0.625	(0.59,1]	chr12	1004357	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYL6	ENSG00000092841.19	ENST00000548580.5:ENST00000550184.5:ENST00000348108.8:ENST00000293422.9:ENST00000552297.5:ENST00000549017.5:ENST00000549566.5:ENST00000547703.5:ENST00000550697.6:ENST00000547649.5:ENST00000536128.5:ENST00000548725.5:ENST00000547408.5:ENST00000551589.5:ENST00000550639.1:ENST00000546630.1:ENST00000548400.5:ENST00000549392.5:ENST00000548293.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	76	2	1.72057	2.548015	3.37546	0.0314051	2.25785e-4	0.131369	0.00375451
chr3	23889111	23889194	3358496	0	+	0.313253	(0.29,0.33]	chr3	294112	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1:ENST00000493707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	31	2	1.75944	2.54801	3.33658	0.0226161	1.69227e-4	0.107244	0.00275464
chr1	28742420	28742520	118406	0	+	0.51	(0.49,0.53]	chr1	14541	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	51	2	2.45352	2.54799	2.64246	0.00164469	5.94013e-4	0.0171491	0.00745979
chr19	583306	583400	17188345	0	+	0.691489	(0.59,1]	chr19	1410791	6	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	207	2	2.35587	2.54799	2.74011	6.20308e-4	4.61073e-5	0.00824471	9.58414e-4
chr6	85641339	85641439	7826078	0	-	0.39	(0.36,0.39]	chr6	599612	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	33	2	1.89391	2.547945	3.20198	0.0121625	4.4092e-4	0.0701019	0.0062930699999999996
chr19	39486396	39486495	17326778	0	+	0.515152	(0.49,0.53]	chr19	1435082	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TIMM50	ENSG00000105197.11	ENST00000544017.5:ENST00000601358.5:ENST00000607714.6:ENST00000599794.5:ENST00000597666.5:ENST00000601403.5:ENST00000602028.5:ENST00000602265.5:ENST00000599733.5:ENST00000594583.2:ENST00000595961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	32	2	1.65423	2.547865	3.4415	0.0288442	9.98297e-4	0.129096	0.0111246
chr7	135927451	135927550	9085555	0	-	0.333333	(0.33,0.36]	chr7	693646	8	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	21	99	2	2.22096	2.5476799999999997	2.8744	6.14605e-4	2.35676e-6	0.00821597	8.27472e-5
chr12	909580	909678	12681680	0	+	0.255102	[0,0.29]	chr12	984184	9	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.84905	2.54761	3.2461700000000002	0.0241194	6.06567e-4	0.110734	0.00817698
chr12	57489508	57489558	12902740	0	+	0.54	(0.53,0.59]	chr12	1005348	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MARS1	ENSG00000166986.15	ENST00000537638.6:ENST00000548674.5:ENST00000550449.5:ENST00000546481.1:ENST00000545888.6:ENST00000262027.10:ENST00000628866.2:ENST00000447721.6:ENST00000549074.5:ENST00000551431.5:ENST00000547501.5:ENST00000553162.5:ENST00000551842.5:ENST00000548714.5:ENST00000551892.1:ENST00000552007.5:ENST00000630803.1:ENST00000630571.2:ENST00000553123.1:ENST00000552371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	34	2	2.35511	2.5474249999999996	2.73974	0.0445399	9.00802e-4	0.172163	0.0102618
chr22	30971222	30971295	18344795	0	+	0.383562	(0.36,0.39]	chr22	1559159	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4:ENST00000643280.1:ENST00000643877.1:ENST00000643071.1:ENST00000540687.6:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000569149.2:ENST00000563812.2:ENST00000566220.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	2.32678	2.547135	2.76749	0.0193538	0.00287858	0.0943643	0.0247002
chr16	88719880	88719960	16074446	0	-	0.55	(0.53,0.59]	chr16	1291633	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000495568.7:ENST00000466823.3:ENST00000497793.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	40	2	1.48274	2.547035	3.61133	0.0371726	4.55298e-4	0.151929	0.00608573
chr1	67413006	67413106	1079136	0	-	0.34	(0.33,0.36]	chr1	110137	53	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	22	98	2	2.36816	2.5469150000000003	2.72567	1.72711e-4	8.09368e-6	0.00303685	2.31397e-4
chr2	203190767	203190862	2321858	0	+	0.610526	(0.59,1]	chr2	210348	5	EXON_MRNA	EXON_MRNA:EXON_PSEUDO:SS5_PROX:INTRON	NBEAL1:RPL12P16	ENSG00000144426.19:ENSG00000204196.5	ENST00000683969.1:ENST00000449802.5:ENST00000681967.1:ENST00000683338.1:ENST00000683001.1:ENST00000682108.1:ENST00000414576.6:ENST00000460355.1:ENST00000683650.1:ENST00000431098.1	protein_coding	protein_coding	protein_coding:transcribed_processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:transcribed_processed_pseudogene	10	126	2	1.81134	2.546885	3.28243	0.0124516	2.50216e-5	0.0710389	5.82427e-4
chr1	247879053	247879151	816545	0	+	0.367347	(0.36,0.39]	chr1	80729	27	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	9	52	2	2.06832	2.546875	3.02543	0.0122123	2.29139e-5	0.0702898	5.4427e-4
chr5	140528277	140528372	6255118	0	+	0.421053	(0.42,0.455]	chr5	487634	2	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.34191	2.54685	2.75179	0.0159091	8.66526e-4	0.0854674	0.0100799
chr3	133828608	133828697	4461273	0	-	0.494382	(0.49,0.53]	chr3	370799	8	UTR3	UTR3:EXON_MRNA:INTRON	RAB6B	ENSG00000154917.11	ENST00000285208.9:ENST00000543906.5:ENST00000469959.1:ENST00000486858.5	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.09506	2.5467750000000002	2.99849	0.00820526	0.00630123	0.05339	0.0445415
chr8	11837887	11837987	9202060	0	+	0.56	(0.53,0.59]	chr8	703061	1	SS3_PROX	SS3_PROX:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	34	2	2.0728	2.5466699999999998	3.02054	0.0086901	0.00577011	0.0559355	0.0426551
chr7	76329079	76329179	8863406	0	-	0.45	(0.42,0.455]	chr7	677476	24	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	23	126	2	2.26156	2.54662	2.83168	1.53861e-4	5.26576e-6	0.00279457	1.61486e-4
chr5	37291799	37291899	6539941	0	-	0.32	(0.29,0.33]	chr5	506493	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000508182.1:ENST00000502533.5:ENST00000381843.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	29	2	2.14478	2.5466100000000003	2.94844	0.00445138	0.00217122	0.0340751	0.0208941
chr6	30069492	30069586	7110075	0	+	0.510638	(0.49,0.53]	chr6	544501	3	UTR3	UTR3:EXON_MRNA	PPP1R11	ENSG00000204619.8	ENST00000376773.5:ENST00000376772.8:ENST00000376769.6:ENST00000376765.6:ENST00000376763.5:ENST00000376758.1	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	1.65324	2.546575	3.43991	0.0407792	8.40266e-5	0.163285	0.00158427
chr10	70218763	70218817	11560780	0	-	0.425926	(0.42,0.455]	chr10	879669	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1:ENST00000460755.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	38	2	2.52254	2.546525	2.57051	0.0265466	5.58298e-4	0.120071	0.00709272
chr9	76385623	76385722	10694374	0	-	0.313131	(0.29,0.33]	chr9	809404	2	UTR3	UTR3:EXON_MRNA	RFK	ENSG00000135002.12	ENST00000376736.6:ENST00000490113.1	protein_coding	protein_coding	protein_coding	protein_coding	11	55	2	1.99395	2.54641	3.09887	0.0131526	5.96903e-6	0.0733631	1.7968e-4
chr16	400342	400424	15481510	0	+	0.609756	(0.59,1]	chr16	1224422	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000620944.4:ENST00000621774.4:ENST00000219479.7:ENST00000448828.5:ENST00000444498.5:ENST00000460297.1:ENST00000382940.8:ENST00000433358.5:ENST00000450036.1:ENST00000468031.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	89	2	1.60816	2.546365	3.48457	0.0256592	1.16515e-4	0.117611	0.0020505
chr1	114396853	114396953	1236970	0	-	0.33	(0.29,0.33]	chr1	120945	42	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000492227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	2.14426	2.5463500000000003	2.94844	0.0142448	0.00217122	0.077929	0.0208941
chr1	172611242	172611341	545513	0	+	0.30303	(0.29,0.33]	chr1	58220	11	UTR3	UTR3:EXON_MRNA	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.14426	2.5463500000000003	2.94844	0.0142448	0.00217122	0.077929	0.0208941
chr22	41523204	41523278	18381027	0	+	0.594595	(0.59,1]	chr22	1564604	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000677492.1:ENST00000679284.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.32455	2.546285	2.76802	0.0520547	0.0158525	0.193787	0.0854671
chr4	26432381	26432479	4766694	0	+	0.326531	(0.29,0.33]	chr4	394281	15	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.61234	2.546175	3.48001	0.0360321	0.00126219	0.145024	0.013837
chr12	54350712	54350806	12892161	0	+	0.478723	(0.455,0.49]	chr12	1003028	3	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000550171.5:ENST00000455864.6:ENST00000549116.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	129	2	2.50838	2.546095	2.58381	1.27375e-4	1.31059e-5	0.00241206	3.4436e-4
chrX	71541169	71541269	18732799	0	+	0.45	(0.42,0.455]	chrX	1598760	27	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	62	2	2.06065	2.5460599999999998	3.03147	0.0013812	2.02875e-4	0.014307	0.0034429
chr1	241502506	241502570	1577418	0	-	0.53125	(0.53,0.59]	chr1	157517	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	29	2	1.88327	2.546005	3.20874	0.0298124	0.00278422	0.129773	0.0241009
chr7	155308456	155308555	8632658	0	+	0.616162	(0.59,1]	chr7	659289	2	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	44	519	2	2.36215	2.5458600000000002	2.72957	7.95489e-5	6.76284e-6	0.00165891	2.00003e-4
chr1	42747331	42747412	966427	0	-	0.567901	(0.53,0.59]	chr1	101708	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	P3H1	ENSG00000117385.16	ENST00000397054.7:ENST00000296388.10:ENST00000460031.5:ENST00000495874.5:ENST00000236040.8:ENST00000462474.5:ENST00000472802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	39	2	2.515	2.5458	2.5766	0.0292633	8.34608e-4	0.129773	0.00978328
chr17	58090969	58091068	16287310	0	+	0.383838	(0.36,0.39]	chr17	1320910	18	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.06832	2.5457349999999996	3.02315	0.0122123	8.65481e-4	0.0702898	0.0100741
chr1	28201053	28201150	912952	0	-	0.278351	[0,0.29]	chr1	95445	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	DNAJC8	ENSG00000126698.11	ENST00000603289.5:ENST00000263697.6:ENST00000489277.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	55	2	2.22966	2.54556	2.86146	4.29688e-4	1.88656e-4	0.00580733	0.0032588
chr1	19105047	19105118	875911	0	-	0.56338	(0.53,0.59]	chr1	89985	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	1.96733	2.5453650000000003	3.1234	0.022694	0.00390623	0.105117	0.0322851
chr17	82079356	82079440	16710665	0	-	0.654762	(0.59,1]	chr17	1378131	1	CDS	CDS:UTR3:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000584610.2:ENST00000578424.2:ENST00000580382.1:ENST00000636628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	1.72824	2.545235	3.36223	0.0471232	0.00203572	0.179872	0.0192213
chr5	150710567	150710664	6914731	0	-	0.340206	(0.33,0.36]	chr5	529276	23	UTR3	UTR3:EXON_MRNA	DCTN4	ENSG00000132912.13	ENST00000447998.7:ENST00000424236.5	protein_coding	protein_coding	protein_coding	protein_coding	10	51	2	2.05144	2.545205	3.03897	0.00903135	2.12757e-5	0.0573114	5.08963e-4
chr16	85590270	85590370	15797224	0	+	0.5	(0.49,0.53]	chr16	1256993	336	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.30264	2.545185	2.78773	0.0165402	0.00257389	0.087611	0.0235767
chr15	58597257	58597356	15310674	0	-	0.373737	(0.36,0.39]	chr15	1208273	86	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	42	2	2.2842	2.54512	2.80604	0.0049656	2.42014e-4	0.0381176	0.00366309
chr7	73441101	73441200	8853470	0	-	0.565657	(0.53,0.59]	chr7	675865	8	UTR3	UTR3:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9	protein_coding	protein_coding	protein_coding	protein_coding	10	73	2	2.43965	2.54511	2.65057	0.00168039	1.3966e-4	0.0175001	0.00236116
chr11	57333053	57333149	12394119	0	-	0.53125	(0.53,0.59]	chr11	958548	2	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6:ENST00000529002.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	33	2	2.16037	2.544995	2.92962	0.0254312	0.0012954	0.117089	0.0136936
chr2	70986039	70986137	2728030	0	-	0.55102	(0.53,0.59]	chr2	243102	2	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	48	2	1.85914	2.544995	3.2308500000000002	0.0128779	2.81517e-4	0.0721992	0.00415519
chr1	47218837	47218935	985538	0	-	0.510204	(0.49,0.53]	chr1	104046	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3:ENST00000459729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.38683	2.54495	2.70307	0.012654	0.00363585	0.0718207	0.0298137
chr7	42927382	42927459	8791681	0	-	0.519481	(0.49,0.53]	chr7	670224	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	2.21702	2.5448500000000003	2.87268	0.00959574	0.00175078	0.0603269	0.0180053
chr17	38878099	38878180	16217996	0	+	0.493827	(0.49,0.53]	chr17	1310783	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	2.30189	2.54481	2.78773	0.00685554	0.00257389	0.0471063	0.0235767
chr5	126804853	126804932	6202519	0	+	0.455696	(0.455,0.49]	chr5	483169	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	43	2	2.23785	2.544785	2.85172	0.010864	0.0010058	0.0643837	0.0112071
chr5	132866881	132866981	6226313	0	+	0.58	(0.53,0.59]	chr5	484687	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	UQCRQ	ENSG00000164405.11	ENST00000378667.1:ENST00000498309.1:ENST00000378670.8:ENST00000496429.1:ENST00000378665.1:ENST00000480372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	106	2	2.41177	2.544645	2.67752	3.64378e-4	4.18806e-5	0.00509947	9.83444e-4
chr3	22381818	22381881	3353704	0	+	0.412698	(0.39,0.42]	chr3	294009	1	EXON_PSEUDO	EXON_PSEUDO	HMGB1P5	ENSG00000132967.9	ENST00000255320.6	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	transcribed_processed_pseudogene	4	24	2	2.13132	2.5445900000000004	2.95786	0.02908	0.00138212	0.127648	0.0149186
chr7	4756993	4757090	8109523	0	+	0.505155	(0.49,0.53]	chr7	619636	1	CDS	CDS:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.49797	2.5444500000000003	2.59093	0.00843736	7.86196e-4	0.0546021	0.00929193
chr16	29697311	29697411	15626489	0	+	0.58	(0.53,0.59]	chr16	1239216	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	QPRT	ENSG00000103485.19	ENST00000449759.2:ENST00000219771.7:ENST00000395384.9:ENST00000562473.1:ENST00000564967.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	45	2	2.52856	2.54429	2.56002	0.00634904	0.00107225	0.0446708	0.0118238
chr22	36511596	36511691	18499599	0	-	0.536842	(0.53,0.59]	chr22	1578411	2	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000478547.1:ENST00000462641.1:ENST00000405442.5:ENST00000426531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	45	2	2.52856	2.54429	2.56002	0.00634904	0.00107225	0.0446708	0.0118238
chr7	121295652	121295751	8496826	0	+	0.585859	(0.53,0.59]	chr7	648451	1	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	18	123	2	2.40358	2.54408	2.68458	9.77349e-5	6.4443e-5	0.00177105	0.00137787
chr10	19746726	19746826	10954399	0	+	0.39	(0.36,0.39]	chr10	833877	124	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000480707.1	protein_coding	processed_transcript	protein_coding	processed_transcript	19	96	2	2.25456	2.54387	2.83318	5.90211e-4	4.97391e-6	0.00799891	1.54467e-4
chr15	55359790	55359886	15294011	0	-	0.364583	(0.36,0.39]	chr15	1207173	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CCPG1:DNAAF4-CCPG1	ENSG00000260916.8:ENSG00000261771.5	ENST00000442196.8:ENST00000565113.5:ENST00000310958.10:ENST00000425574.7:ENST00000568543.1:ENST00000568592.1:ENST00000568808.5:ENST00000568372.5:ENST00000569205.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	3	18	2	2.45656	2.5438549999999998	2.63115	0.0245975	0.0100637	0.114841	0.0624019
chr5	36177194	36177292	5933549	0	+	0.387755	(0.36,0.39]	chr5	465232	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SKP2	ENSG00000145604.17	ENST00000274254.9:ENST00000677537.1:ENST00000678260.1:ENST00000513151.6:ENST00000546211.6:ENST00000620197.5:ENST00000678270.1:ENST00000679258.1:ENST00000679015.1:ENST00000677911.1:ENST00000677984.1:ENST00000676559.1:ENST00000678537.1:ENST00000274255.11:ENST00000678580.1:ENST00000508514.5:ENST00000509692.5:ENST00000678149.1:ENST00000678948.1:ENST00000513263.2:ENST00000677861.1:ENST00000504386.1:ENST00000677905.1:ENST00000677886.1:ENST00000678129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	2.45656	2.5438549999999998	2.63115	0.0245975	0.0100637	0.114841	0.0624019
chr7	148800501	148800582	8611116	0	+	0.37037	(0.36,0.39]	chr7	656755	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CUL1	ENSG00000055130.17	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000617797.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.45656	2.5438549999999998	2.63115	0.0245975	0.0100637	0.114841	0.0624019
chrX	138635555	138635655	19251320	0	-	0.38	(0.36,0.39]	chrX	1635541	2	CDS	CDS:EXON_MRNA	FGF13	ENSG00000129682.16	ENST00000315930.11:ENST00000305414.8:ENST00000441825.8:ENST00000626909.2:ENST00000436198.5:ENST00000455663.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.45656	2.5438549999999998	2.63115	0.0245975	0.0100637	0.114841	0.0624019
chr6	12514548	12514636	7056033	0	+	0.579545	(0.53,0.59]	chr6	540326	6	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	30	2	2.29789	2.543845	2.7898	0.0128364	0.00674768	0.0719798	0.0468196
chr9	109119429	109119525	10788786	0	-	0.791667	(0.59,1]	chr9	816908	2	CDS	CDS:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.09833	2.5437250000000002	2.9891200000000002	0.0150311	0.00823979	0.0816517	0.0540283
chr6	116278894	116278987	7908902	0	-	0.473118	(0.455,0.49]	chr6	605659	4	CDS	CDS:EXON_MRNA	TSPYL1	ENSG00000189241.8	ENST00000652202.1:ENST00000368608.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	1.95898	2.543705	3.12843	0.047107	0.00392855	0.172269	0.0322851
chr1	171584109	171584187	537545	0	+	0.487179	(0.455,0.49]	chr1	57718	3	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	11	61	2	2.33911	2.54358	2.74805	5.94441e-4	3.3051e-4	0.00804997	0.00470169
chr22	21772927	21772982	18442484	0	-	0.4	(0.39,0.42]	chr22	1572521	2	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	9	62	2	1.79377	2.543435	3.2931	0.0299302	3.08248e-6	0.129773	1.0335e-4
chr3	128650539	128650619	4441623	0	-	0.6875	(0.59,1]	chr3	369051	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	66	2	1.8502	2.5434	3.2366	0.0334531	4.06803e-4	0.140296	0.00552995
chr11	47467822	47467922	12386786	0	-	0.29	[0,0.29]	chr11	956932	20	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	10	33	2	1.55562	2.54337	3.53112	0.0332276	5.30932e-5	0.139614	0.00108035
chr17	35007371	35007470	16204857	0	+	0.464646	(0.455,0.49]	chr17	1308772	30	UTR3	UTR3:EXON_MRNA	LIG3	ENSG00000005156.12	ENST00000378526.9	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.23479	2.543255	2.85172	0.0209335	0.010864	0.101282	0.0643837
chr3	15070462	15070560	4050328	0	-	0.469388	(0.455,0.49]	chr3	340156	5	UTR3	UTR3:EXON_MRNA	RBSN	ENSG00000131381.12	ENST00000253699.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.23479	2.543255	2.85172	0.0209335	0.010864	0.101282	0.0643837
chr5	95793174	95793267	6108486	0	+	0.354839	(0.33,0.36]	chr5	478270	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000504179.5:ENST00000503737.1:ENST00000513091.1:ENST00000514198.1	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	2.46028	2.54284	2.6254	0.00381804	0.00106803	0.0309081	0.0124232
chr22	43167017	43167116	18527853	0	-	0.30303	(0.29,0.33]	chr22	1582334	5	UTR3	UTR3:EXON_MRNA	TTLL12	ENSG00000100304.13	ENST00000216129.7:ENST00000484711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.45373	2.542675	2.63162	0.0156405	0.00179843	0.084273700000000007	0.0174371
chr4	87337179	87337275	5517999	0	-	0.3125	(0.29,0.33]	chr4	441925	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-529H2.2:HSD17B11	ENSG00000255723.1:ENSG00000198189.11	ENST00000508163.1:ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	5	24	2	2.45373	2.542675	2.63162	0.0156405	0.00179843	0.084273700000000007	0.0174371
chr11	63759491	63759591	11976863	0	+	0.46	(0.455,0.49]	chr11	918385	12	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.12994	2.5426	2.95526	0.0304832	2.88167e-4	0.130204	0.00423739
chr9	92274425	92274521	10737396	0	-	0.479167	(0.455,0.49]	chr9	812360	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.12994	2.5426	2.95526	0.0304832	2.88167e-4	0.130204	0.00423739
chrX	120254951	120255046	18844008	0	+	0.389474	(0.36,0.39]	chrX	1605766	16	CDS	CDS:EXON_MRNA	ZBTB33	ENSG00000177485.7	ENST00000326624.2:ENST00000557385.2	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.89872	2.54257	3.18642	0.056542	0.00359152	0.19417	0.0302391
chr4	118723019	118723118	5617824	0	-	0.282828	[0,0.29]	chr4	447551	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	2.11932	2.542325	2.96533	0.0332641	0.0024246	0.137922	0.0227938
chr6	41787797	41787825	7150312	0	+	0.5	(0.49,0.53]	chr6	551643	1	CDS	CDS:UTR3:EXON_MRNA	RP11-298J23.10:TOMM6	ENSG00000124593.16:ENSG00000214736.8	ENST00000456057.5:ENST00000487182.5:ENST00000335515.10:ENST00000398884.7:ENST00000398881.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	1.56467	2.54224	3.51981	0.051923	6.88328e-4	0.18423900000000001	0.00876781
chr11	34079696	34079765	11905274	0	+	0.550725	(0.53,0.59]	chr11	909527	2	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.88327	2.542205	3.20114	0.0298124	6.63641e-5	0.129773	0.00129398
chr19	58550637	58550722	17413367	0	+	0.470588	(0.455,0.49]	chr19	1451224	2	UTR3	UTR3:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	7	54	2	1.96875	2.54215	3.11555	0.0480352	1.18691e-5	0.180552	3.16198e-4
chr17	81932963	81933046	16710119	0	-	0.554217	(0.53,0.59]	chr17	1377897	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6	protein_coding	protein_coding	protein_coding	protein_coding	13	92	2	2.51629	2.54209	2.56789	5.70328e-4	8.86372e-5	0.00779621	0.00164717
chr3	47875756	47875828	4164007	0	-	0.527778	(0.49,0.53]	chr3	348543	2	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3:ENST00000462206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	2.21702	2.54206	2.8671	0.0100489	0.00959574	0.0623334	0.0603269
chr9	128267933	128267997	10864275	0	-	0.5	(0.49,0.53]	chr9	823570	1	CDS	CDS:EXON_MRNA:INTRON	GOLGA2	ENSG00000167110.18	ENST00000421699.7:ENST00000611957.4:ENST00000610329.4:ENST00000450617.6:ENST00000458730.2	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.21702	2.54206	2.8671	0.0100489	0.00959574	0.0623334	0.0603269
chr16	21953423	21953456	15586711	0	+	0.515152	(0.49,0.53]	chr16	1235406	1	CDS_START	CDS_START:CDS:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000630839.2:ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.38097	2.54202	2.70307	0.0425419	0.00363585	0.167547	0.0298137
chrX	155239641	155239741	18920376	0	+	0.34	(0.33,0.36]	chrX	1612534	9	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	10	43	2	2.17012	2.5419799999999997	2.91384	0.0021527	0.00108046	0.0208395	0.0118355
chr1	155318229	155318291	483653	0	+	0.548387	(0.53,0.59]	chr1	50786	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5:ENST00000492887.5:ENST00000492244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	57	2	2.34398	2.54186	2.73974	0.00143671	9.00802e-4	0.0154399	0.0102618
chr5	98855381	98855480	6725369	0	-	0.363636	(0.36,0.39]	chr5	517718	15	UTR3	UTR3:EXON_MRNA	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.05966	2.5418149999999997	3.02397	0.0366015	0.00674398	0.145024	0.0461258
chr7	43688510	43688610	8794419	0	-	0.39	(0.36,0.39]	chr7	670449	224	INTRON	INTRON	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000223336.11:ENST00000310564.10:ENST00000415798.5:ENST00000431651.5:ENST00000451651.5:ENST00000418140.5:ENST00000448704.5:ENST00000470156.1:ENST00000457939.1:ENST00000420441.1:ENST00000478504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.05966	2.5418149999999997	3.02397	0.0366015	0.00674398	0.145024	0.0461258
chr8	140526548	140526648	10132108	0	-	0.38	(0.36,0.39]	chr8	760954	65	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.05966	2.5418149999999997	3.02397	0.0366015	0.00674398	0.145024	0.0461258
chr1	65366047	65366121	250968	0	+	0.405405	(0.39,0.42]	chr1	28659	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6:ENST00000263441.11:ENST00000395325.7:ENST00000371069.5:ENST00000472787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr12	4669740	4669817	12706891	0	+	0.415584	(0.39,0.42]	chr12	985879	1	CDS	CDS:EXON_MRNA	RP11-234B24.6:NDUFA9	ENSG00000255639.3:ENSG00000139180.11	ENST00000648836.1:ENST00000266544.10:ENST00000544675.1:ENST00000543979.1:ENST00000544741.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr2	206120396	206120496	3132920	0	-	0.42	(0.39,0.42]	chr2	276949	57	UTR3	UTR3:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr2	226995522	226995621	2412586	0	+	0.40404	(0.39,0.42]	chr2	216865	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RHBDD1	ENSG00000144468.17	ENST00000341329.7:ENST00000392062.7:ENST00000491490.5:ENST00000493526.1:ENST00000483268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr5	119496594	119496646	6178255	0	+	0.403846	(0.39,0.42]	chr5	481987	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000520216.5:ENST00000512029.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr6	7199612	7199712	7030863	0	+	0.41	(0.39,0.42]	chr6	538711	99	INTRON	INTRON	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr8	42049068	42049159	9809964	0	-	0.417582	(0.39,0.42]	chr8	741864	2	UTR5	UTR5:EXON_MRNA	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2:ENST00000426524.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr9	77720828	77720927	10699837	0	-	0.393939	(0.39,0.42]	chr9	809634	49	UTR3	UTR3:EXON_MRNA	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.37759	2.54175	2.70591	0.0428865	0.0185716	0.161091	0.0932453
chr9	133363759	133363794	10880452	0	-	0.285714	[0,0.29]	chr9	825845	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1:ENST00000467910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	2.40395	2.54174	2.67953	0.0210081	0.0046416	0.101116	0.0354333
chr12	110346654	110346746	13085916	0	+	0.282609	[0,0.29]	chr12	1020554	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	80	2	1.92682	2.5417	3.15658	0.00590259	5.03473e-7	0.0427941	2.22486e-5
chr16	31189172	31189226	15633454	0	+	0.333333	(0.33,0.36]	chr16	1241203	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2:ENST00000564766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	37	2	2.05144	2.54162	3.0318	0.00903135	1.96415e-4	0.0573114	0.00311664
chr10	94613311	94613410	11202936	0	+	0.343434	(0.33,0.36]	chr10	852122	36	UTR3	UTR3:EXON_MRNA	HELLS	ENSG00000119969.15	ENST00000371327.2	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.07736	2.541545	3.00573	0.0442037	0.00630535	0.172163	0.044701
chr4	55425632	55425723	4843500	0	+	0.351648	(0.33,0.36]	chr4	398981	3	UTR3	UTR3:EXON_MRNA:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000608091.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.07736	2.541545	3.00573	0.0442037	0.00630535	0.172163	0.044701
chr5	111126783	111126883	6144710	0	+	0.34	(0.33,0.36]	chr5	480258	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.07736	2.541545	3.00573	0.0442037	0.00630535	0.172163	0.044701
chr7	135162894	135162993	9082210	0	-	0.343434	(0.33,0.36]	chr7	693268	149	INTRON	INTRON	CYREN	ENSG00000122783.17	ENST00000459937.5	protein_coding	processed_transcript	protein_coding	processed_transcript	3	16	2	2.07736	2.541545	3.00573	0.0442037	0.00630535	0.172163	0.044701
chr1	40416258	40416341	153975	0	+	0.433735	(0.42,0.455]	chr1	19269	2	CDS	CDS:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	7	42	2	2.51988	2.541255	2.56263	0.00300574	9.19381e-4	0.0267032	0.0104432
chr5	43294775	43294861	6560211	0	-	0.383721	(0.36,0.39]	chr5	508353	2	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2:ENST00000508319.1:ENST00000514610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	72	2	2.10088	2.5410500000000003	2.98122	6.7155e-4	4.19033e-5	0.00822827	9.83754e-4
chr8	144085881	144085953	9650276	0	+	0.680556	(0.59,1]	chr8	731501	1	CDS	CDS:EXON_MRNA	GPAA1	ENSG00000197858.11	ENST00000355091.9:ENST00000361036.10:ENST00000529638.1:ENST00000530796.1:ENST00000534072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	42	2	2.4994	2.541045	2.58269	0.0333573	0.0067313	0.137922	0.0461258
chr6	43777468	43777566	7159849	0	+	0.510204	(0.49,0.53]	chr6	553439	1	CDS	CDS:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000476772.5:ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000425836.7:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000518538.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000512683.1:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	117	2	2.49297	2.54056	2.58815	6.69943e-4	1.09607e-5	0.0087033	2.97102e-4
chr3	100736645	100736716	3637671	0	+	0.549296	(0.53,0.59]	chr3	311853	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	58	2	2.5209	2.5404600000000004	2.56002	0.00634904	3.09131e-4	0.0446708	0.00446345
chr9	137112170	137112230	10893154	0	-	0.616667	(0.59,1]	chr9	828362	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPP7	ENSG00000176978.14	ENST00000371579.7:ENST00000473532.5:ENST00000470766.5:ENST00000463619.1:ENST00000483783.1:ENST00000472306.5:ENST00000485456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.38614	2.540455	2.69477	0.020208	0.0128707	0.0978331	0.0725185
chr19	53876047	53876144	17388685	0	+	0.505155	(0.49,0.53]	chr19	1446783	17	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.38204	2.5397499999999997	2.69746	0.0049129	0.00380414	0.0366648	0.0317723
chr12	110429758	110429858	13537381	0	-	0.66	(0.59,1]	chr12	1064862	262	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	11	124	2	2.24907	2.53973	2.83039	9.76228e-4	8.24076e-4	0.0109247	0.0102141
chrX	53604670	53604752	19077946	0	-	0.585366	(0.53,0.59]	chrX	1622933	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	29	2	2.0693	2.5396	3.0099	0.0160468	0.00600486	0.0860154	0.042887
chr4	77035297	77035395	4900539	0	+	0.469388	(0.455,0.49]	chr4	403559	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	58	2	1.80405	2.53947	3.27489	0.017721400000000002	1.06338e-5	0.0918323	2.90771e-4
chr1	47216877	47216975	985518	0	-	0.397959	(0.39,0.42]	chr1	104046	7	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	15	66	2	1.83326	2.53944	3.24562	0.00253015	5.84121e-5	0.0227254	0.00129108
chr1	162590322	162590416	507856	0	+	0.404255	(0.39,0.42]	chr1	54811	1	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	11	59	2	1.85749	2.539425	3.22136	0.00953248	6.03429e-6	0.0599768	1.9852e-4
chr12	7920518	7920618	13193168	0	-	0.3	(0.29,0.33]	chr12	1033481	14	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	22	2	2.22218	2.53937	2.85656	0.023782	9.79425e-4	0.109413	0.0116574
chr14	74782126	74782225	14401399	0	+	0.454545	(0.42,0.455]	chr14	1125425	9	CDS	CDS:EXON_MRNA	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.32629	2.539295	2.7523	0.0153564	0.0153283	0.0832114	0.0828908
chr2	26269952	26269997	1686215	0	+	0.444444	(0.42,0.455]	chr2	164826	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.32629	2.539295	2.7523	0.0153564	0.0153283	0.0832114	0.0828908
chr3	150458835	150458935	3807491	0	+	0.43	(0.42,0.455]	chr3	324963	3	UTR3	UTR3:EXON_MRNA	TSC22D2	ENSG00000196428.12	ENST00000361875.7:ENST00000480589.1:ENST00000466814.1:ENST00000460316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.32629	2.539295	2.7523	0.0153564	0.0153283	0.0832114	0.0828908
chr8	101201606	101201641	9976889	0	-	0.428571	(0.42,0.455]	chr8	752831	1	CDS	CDS:EXON_MRNA	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000519103.1:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.32629	2.539295	2.7523	0.0153564	0.0153283	0.0832114	0.0828908
chr15	74929173	74929232	15376357	0	-	0.491525	(0.49,0.53]	chr15	1215564	2	CDS	CDS:UTR5:EXON_MRNA:INTRON	COX5A	ENSG00000178741.12	ENST00000322347.11:ENST00000567270.5:ENST00000562233.5:ENST00000568783.5:ENST00000568517.1:ENST00000564811.1	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	2.5375	2.5392900000000003	2.54108	0.00104367	5.09746e-4	0.0115928	0.00713668
chr19	40750271	40750365	17567426	0	-	0.510638	(0.49,0.53]	chr19	1476617	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000598485.6:ENST00000596809.5:ENST00000597507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.51671	2.53927	2.56183	0.0261296	0.00768763	0.118976	0.050396
chr2	96278297	96278358	2790290	0	-	0.52459	(0.49,0.53]	chr2	248706	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.51671	2.53927	2.56183	0.0261296	0.00768763	0.118976	0.050396
chr17	30249116	30249168	16495764	0	-	0.461538	(0.455,0.49]	chr17	1349316	1	CDS	CDS:UTR3:EXON_MRNA	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578795.1:ENST00000578090.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	2.50904	2.53921	2.56938	0.0310515	0.00635313	0.131262	0.0449666
chr1	32333838	32333932	922168	0	-	0.308511	(0.29,0.33]	chr1	97099	1	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	19	73	2	2.46436	2.5392	2.61404	1.08789e-4	6.59295e-5	0.00209334	0.00128652
chr10	94602910	94603010	11202829	0	+	0.43	(0.42,0.455]	chr10	852111	9	INTRON	INTRON	RP11-119K6.6:HELLS	ENSG00000244332.1:ENSG00000119969.15	ENST00000432120.1:ENST00000371327.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	15	2	2.3259	2.5391	2.7523	0.0484606	0.0153283	0.175495	0.0828908
chr11	13714594	13714680	11812973	0	+	0.44186	(0.42,0.455]	chr11	904618	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAR1	ENSG00000197601.13	ENST00000354817.8:ENST00000527202.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.3259	2.5391	2.7523	0.0484606	0.0153283	0.175495	0.0828908
chr13	27435432	27435497	13658070	0	+	0.430769	(0.42,0.455]	chr13	1076493	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GTF3A	ENSG00000122034.17	ENST00000381140.10:ENST00000419181.5:ENST00000470606.5:ENST00000482655.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.3259	2.5391	2.7523	0.0484606	0.0153283	0.175495	0.0828908
chr17	43189658	43189730	16231585	0	+	0.444444	(0.42,0.455]	chr17	1313893	2	CDS	CDS:EXON_MRNA	NBR1	ENSG00000188554.15	ENST00000341165.10:ENST00000542611.5:ENST00000590996.6:ENST00000589872.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.3259	2.5391	2.7523	0.0484606	0.0153283	0.175495	0.0828908
chr6	36108745	36108845	7132618	0	+	0.43	(0.42,0.455]	chr6	549275	4	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.3259	2.5391	2.7523	0.0484606	0.0153283	0.175495	0.0828908
chrX	153352628	153352727	18914115	0	+	0.444444	(0.42,0.455]	chrX	1610850	48	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3:ENST00000438239.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.3259	2.5391	2.7523	0.0484606	0.0153283	0.175495	0.0828908
chr1	162599363	162599458	507953	0	+	0.378947	(0.36,0.39]	chr1	54834	1	UTR3	UTR3:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1:ENST00000486089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	54	2	1.91484	2.539055	3.16327	0.00697505	2.37351e-5	0.0474916	5.60496e-4
chr4	99881399	99881498	5550915	0	-	0.292929	(0.29,0.33]	chr4	443610	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LAMTOR3	ENSG00000109270.13	ENST00000499666.7:ENST00000226522.8:ENST00000515100.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.24226	2.538785	2.83531	0.0306054	0.00228447	0.130226	0.0209856
chr11	62516368	62516462	12408595	0	-	0.340426	(0.33,0.36]	chr11	960899	6	UTR3	UTR3:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000525875.1:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	2.10153	2.538725	2.97592	0.00871844	4.1482e-4	0.0560911	0.00607555
chr9	112222761	112222860	10802910	0	-	0.272727	[0,0.29]	chr9	818409	52	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	10	47	2	1.88543	2.53869	3.19195	0.0226603	7.26476e-6	0.10742	2.13023e-4
chr1	7778117	7778169	29739	0	+	0.423077	(0.42,0.455]	chr1	3436	1	CDS	CDS:EXON_MRNA	VAMP3	ENSG00000049245.13	ENST00000054666.11:ENST00000470357.1:ENST00000487194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.50649	2.5385	2.57051	0.0302857	0.0265466	0.130016	0.120071
chr1	108628166	108628262	394861	0	+	0.447917	(0.42,0.455]	chr1	38035	1	CDS	CDS:EXON_MRNA	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.50649	2.5385	2.57051	0.0302857	0.0265466	0.130016	0.120071
chr14	20311700	20311752	14517199	0	-	0.442308	(0.42,0.455]	chr14	1136455	2	CDS	CDS:UTR3:EXON_MRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000554184.5:ENST00000556854.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.50649	2.5385	2.57051	0.0302857	0.0265466	0.130016	0.120071
chr4	38944052	38944152	4797489	0	+	0.43	(0.42,0.455]	chr4	395675	6	UTR3	UTR3:EXON_MRNA	FAM114A1	ENSG00000197712.12	ENST00000358869.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50649	2.5385	2.57051	0.0302857	0.0265466	0.130016	0.120071
chr5	175509134	175509202	6397599	0	+	0.441176	(0.42,0.455]	chr5	496773	2	CDS	CDS:UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000507017.5:ENST00000321442.10:ENST00000508290.5:ENST00000502393.5:ENST00000507823.5:ENST00000513725.1:ENST00000506963.1:ENST00000502865.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	15	2	2.50649	2.5385	2.57051	0.0302857	0.0265466	0.130016	0.120071
chr9	97569237	97569337	10380171	0	+	0.45	(0.42,0.455]	chr9	781692	2	SS5_PROX	SS5_PROX:INTRON	TMOD1	ENSG00000136842.14	ENST00000395211.6:ENST00000259365.9:ENST00000375175.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50649	2.5385	2.57051	0.0302857	0.0265466	0.130016	0.120071
chr2	37099905	37100005	2597012	0	-	0.36	(0.33,0.36]	chr2	233829	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF2AK2	ENSG00000055332.19	ENST00000681329.1:ENST00000681507.1:ENST00000681463.1:ENST00000679507.1:ENST00000233057.9:ENST00000679979.1:ENST00000680273.1:ENST00000681516.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	1.82394	2.53833	3.25272	0.0494504	2.63256e-4	0.18557	0.00393206
chr17	39253661	39253761	16534294	0	-	0.33	(0.29,0.33]	chr17	1353914	11	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.99403	2.5383199999999997	3.08261	0.0202925	0.0048227	0.098158	0.0365653
chr5	95794613	95794710	6108502	0	+	0.28866000000000003	[0,0.29]	chr5	478272	7	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	14	51	2	2.36438	2.5383	2.71222	5.56571e-4	1.34594e-4	0.00707233	0.00249552
chr14	55064925	55065024	14298050	0	+	0.292929	(0.29,0.33]	chr14	1117553	4	UTR3	UTR3:EXON_MRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	1.99389	2.5382499999999997	3.08261	0.00896841	0.0048227	0.0569518	0.0365653
chr6	30704908	30705007	7659046	0	-	0.525253	(0.49,0.53]	chr6	584223	14	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	12	66	2	2.03465	2.53823	3.04181	0.0015896	1.75203e-4	0.0158857	0.00306313
chr1	120850901	120850985	1258548	0	-	0.464286	(0.455,0.49]	chr1	123329	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA	CH17-3B23.3:RNVU1-19	ENSG00000287979.1:ENSG00000275538.1	ENST00000664186.1:ENST00000613023.1	snRNA	snRNA	snRNA:lncRNA	snRNA:lncRNA	11	57	2	1.91811	2.538115	3.15812	0.00411364	8.56318e-5	0.0325842	0.00160672
chr1	235109631	235109729	1560068	0	-	0.377551	(0.36,0.39]	chr1	156012	4	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	11	63	2	2.00093	2.538045	3.07516	0.00996106	6.89731e-6	0.0621728	0.00020353099999999999
chr6	80010885	80010957	7258411	0	+	0.388889	(0.36,0.39]	chr6	559221	2	CDS	CDS:EXON_MRNA	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7:ENST00000430061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.38564	2.537995	2.69035	0.0476159	0.00123789	0.17993	0.013161
chr4	121668119	121668206	5625874	0	-	0.275862	[0,0.29]	chr4	448423	3	UTR3	UTR3:EXON_MRNA	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	2.25155	2.5379899999999997	2.82443	0.0180803	0.00495706	0.0920398	0.0368301
chr8	144097033	144097083	9650305	0	+	0.58	(0.53,0.59]	chr8	731519	1	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000525122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	33	2	1.85636	2.537885	3.21941	0.0197135	0.00266171	0.0983378	0.0240332
chr1	241881966	241882017	796617	0	+	0.352941	(0.33,0.36]	chr1	79470	2	CDS	CDS:EXON_MRNA:INTRON	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5:ENST00000521202.2	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.31026	2.53788	2.7655	0.0519897	0.0175892	0.18423900000000001	0.0918323
chr12	65215976	65216043	12927903	0	+	0.358209	(0.33,0.36]	chr12	1007608	1	CDS	CDS:EXON_MRNA	LEMD3	ENSG00000174106.3	ENST00000308330.3	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.31026	2.53788	2.7655	0.0519897	0.0175892	0.18423900000000001	0.0918323
chr12	123221807	123221895	13594537	0	-	0.340909	(0.33,0.36]	chr12	1070877	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MPHOSPH9	ENSG00000051825.15	ENST00000606320.6:ENST00000541076.6:ENST00000545556.6:ENST00000302373.8:ENST00000539336.2:ENST00000537854.5:ENST00000539639.5:ENST00000541437.5:ENST00000538169.5:ENST00000535049.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	2.31026	2.53788	2.7655	0.0519897	0.0175892	0.18423900000000001	0.0918323
chr4	122174573	122174652	5084061	0	+	0.35443	(0.33,0.36]	chr4	412442	1	CDS	CDS:EXON_MRNA	KIAA1109	ENSG00000138688.16	ENST00000679879.1:ENST00000264501.8:ENST00000388738.7	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.31026	2.53788	2.7655	0.0519897	0.0175892	0.18423900000000001	0.0918323
chr16	68122458	68122553	15714217	0	+	0.568421	(0.53,0.59]	chr16	1250981	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	71	2	2.05519	2.53783	3.02047	0.00373312	6.25942e-5	0.0312524	0.00124286
chr1	202748944	202749041	1451936	0	-	0.371134	(0.36,0.39]	chr1	145835	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1:ENST00000649929.1:ENST00000647754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	13	2	2.44447	2.53781	2.63115	0.0364669	0.0245975	0.145024	0.114841
chr2	32298252	32298311	1712179	0	+	0.38983	(0.36,0.39]	chr2	167948	1	CDS	CDS:UTR3:EXON_MRNA	YIPF4	ENSG00000119820.11	ENST00000238831.9:ENST00000437765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.44447	2.53781	2.63115	0.0364669	0.0245975	0.145024	0.114841
chr10	95290915	95291003	11630313	0	-	0.784091	(0.59,1]	chr10	885763	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.46484	2.53779	2.61074	0.025486	0.00383661	0.117089	0.0310411
chr8	109343404	109343481	9555169	0	+	0.454545	(0.42,0.455]	chr8	725152	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENY2	ENSG00000120533.13	ENST00000521662.5:ENST00000522766.5:ENST00000517311.5:ENST00000339942.11:ENST00000520147.5:ENST00000521688.6:ENST00000522407.5:ENST00000523335.1:ENST00000517756.5:ENST00000517350.5:ENST00000523707.1:ENST00000521619.1:ENST00000518118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	36	2	1.65244	2.53777	3.4231	0.0163345	0.00112541	0.0867615	0.0128481
chrX	92113899	92113993	19142680	0	-	0.425532	(0.42,0.455]	chrX	1627984	8	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	28	2	2.03532	2.537675	3.04003	0.040947	7.68268e-4	0.163285	0.00916171
chr1	180884263	180884361	586608	0	+	0.265306	[0,0.29]	chr1	60742	3	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	9	38	2	2.03267	2.53765	3.04263	0.0131453	6.05547e-5	0.0733537	0.00121263
chrX	24054968	24055037	18616448	0	+	0.608696	(0.59,1]	chrX	1589780	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	225	2	1.8706	2.53757	3.20454	0.00422398	3.31233e-6	0.0330713	1.09599e-4
chr12	46187000	46187098	13313418	0	-	0.367347	(0.36,0.39]	chr12	1043464	41	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.1437	2.5375300000000003	2.93136	0.0340515	0.00811967	0.141465	0.0528637
chr2	183607634	183607731	3061353	0	-	0.360825	(0.36,0.39]	chr2	271462	3	EXON_PSEUDO	EXON_PSEUDO	CACYBPP2	ENSG00000177855.8	ENST00000453625.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	17	2	2.1437	2.5375300000000003	2.93136	0.0340515	0.00811967	0.141465	0.0528637
chr20	3931976	3932075	17883244	0	-	0.383838	(0.36,0.39]	chr20	1513717	48	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.1437	2.5375300000000003	2.93136	0.0340515	0.00811967	0.141465	0.0528637
chr3	10312031	10312098	4032405	0	-	0.671642	(0.59,1]	chr3	338595	2	CDS	CDS:EXON_MRNA	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000482647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	2.09833	2.5374299999999996	2.97653	0.0150311	0.00142722	0.0816517	0.0153442
chr6	170584581	170584636	8091295	0	-	0.763636	(0.59,1]	chr6	618092	1	UTR5	UTR5:EXON_MRNA	PDCD2	ENSG00000071994.11	ENST00000541970.6:ENST00000167218.9:ENST00000545869.5:ENST00000542896.5:ENST00000453163.6:ENST00000537445.5:ENST00000544336.5:ENST00000614056.4:ENST00000443345.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	64	2	2.09833	2.5374299999999996	2.97653	0.0150311	0.00142722	0.0816517	0.0153442
chr19	38727945	38728026	17323742	0	+	0.679012	(0.59,1]	chr19	1434368	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000497637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	65	2	1.90752	2.53742	3.16732	0.0282297	5.6576e-4	0.127287	0.00718071
chr1	27850635	27850729	114787	0	+	0.446809	(0.42,0.455]	chr1	13956	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000486634.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	41	2	2.3893	2.537375	2.68545	0.00221606	0.00135767	0.0205138	0.0146849
chr1	219997072	219997162	1510964	0	-	0.377778	(0.36,0.39]	chr1	151029	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	2.32678	2.5373200000000002	2.74786	0.0193538	4.02573e-5	0.0943643	8.65857e-4
chr15	59768549	59768649	14962126	0	+	0.36	(0.33,0.36]	chr15	1175886	3	EXON_PSEUDO	EXON_PSEUDO	RPS3AP6	ENSG00000234797.5	ENST00000484430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	79	2	2.50313	2.5372950000000003	2.57146	1.28998e-4	6.29011e-5	0.00241696	0.00124286
chr6	26104259	26104337	7101129	0	+	0.423077	(0.42,0.455]	chr6	542790	1	UTR3	UTR3:EXON_MRNA	H4C3	ENSG00000197061.5	ENST00000377803.4	protein_coding	protein_coding	protein_coding	protein_coding	18	117	2	2.06164	2.53715	3.01266	0.00283698	7.9567e-7	0.0253181	3.29138e-5
chr17	17814680	17814747	16465693	0	-	0.671642	(0.59,1]	chr17	1344689	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000662439.1:ENST00000395756.5:ENST00000447641.5:ENST00000581707.1:ENST00000490796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	40	2	2.30623	2.5371249999999996	2.76802	0.0170607	0.0158525	0.0896731	0.0854671
chr2	26234286	26234355	2566089	0	-	0.434783	(0.42,0.455]	chr2	230622	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2:ENST00000461025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	59	2	1.63927	2.53696	3.43465	0.0455517	3.26154e-6	0.175554	1.08317e-4
chr16	1699975	1700073	15488680	0	+	0.306122	(0.29,0.33]	chr16	1226188	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000566742.5:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.34203	2.536905	2.73178	0.010113	0.00360855	0.0626311	0.0296421
chr1	77956635	77956700	1112752	0	-	0.461538	(0.455,0.49]	chr1	111870	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000470287.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	52	2	2.37552	2.5369	2.69828	0.00134626	4.39828e-4	0.0145759	0.00592532
chr4	121820615	121820690	5626308	0	-	0.386667	(0.36,0.39]	chr4	448551	2	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	13	63	2	2.43505	2.536875	2.6387	3.96422e-4	2.0858e-4	0.00587914	0.00327071
chr12	76352893	76352993	13424306	0	-	0.26	[0,0.29]	chr12	1056701	12	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.96069	2.5366299999999997	3.11257	0.0162003	0.00120521	0.0866586	0.0134827
chr22	35410826	35410910	18359490	0	+	0.654762	(0.59,1]	chr22	1561009	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000444778.1:ENST00000464908.5:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	41	2	2.47837	2.5364899999999997	2.59461	0.0259455	0.00970721	0.117079	0.0608296
chr19	41353239	41353336	17568718	0	-	0.546392	(0.53,0.59]	chr19	1476913	3	UTR5	UTR5:EXON_MRNA	TGFB1	ENSG00000105329.11	ENST00000221930.6	protein_coding	protein_coding	protein_coding	protein_coding	13	99	2	2.2732	2.536365	2.79953	0.00369236	1.1396e-5	0.030936	3.08038e-4
chr1	225411336	225411388	1528157	0	-	0.403846	(0.39,0.42]	chr1	152804	1	CDS	CDS:EXON_MRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000424022.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	63	2	2.19876	2.53629	2.87382	0.00372927	3.04876e-5	0.031224	6.83541e-4
chr18	36796304	36796404	17079096	0	-	0.29	[0,0.29]	chr18	1403215	23	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	54	2	2.41258	2.5361900000000004	2.6598	4.15137e-4	1.15031e-4	0.00564039	0.00219531
chr12	111470069	111470169	13540021	0	-	0.47	(0.455,0.49]	chr12	1065268	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000643474.1:ENST00000643694.1:ENST00000550889.5:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	26	2	2.40664	2.536135	2.66563	0.0123662	0.0043075	0.0705839	0.0334284
chr9	7477731	7477829	10545927	0	-	0.428571	(0.42,0.455]	chr9	799719	8	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	113	2	2.3913	2.536125	2.68095	1.98842e-4	1.19995e-5	0.0033896	3.19378e-4
chr6	67882978	67883078	7784090	0	-	0.42	(0.39,0.42]	chr6	596223	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	58	288	2	2.53038	2.535945	2.54151	1.86625e-6	1.75104e-6	7.49347e-5	6.40631e-5
chr4	78872705	78872798	4912306	0	+	0.473118	(0.455,0.49]	chr4	404392	2	CDS	CDS:UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	72	2	1.8731	2.5357849999999997	3.19847	0.00299234	1.88969e-5	0.0256001	5.12059e-4
chr14	103335760	103335860	14502142	0	+	0.37	(0.36,0.39]	chr14	1133996	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF5	ENSG00000100664.11	ENST00000560877.5:ENST00000559249.5:ENST00000560338.5:ENST00000216554.8:ENST00000560763.5:ENST00000558316.5:ENST00000560200.5:ENST00000558265.5:ENST00000561325.5:ENST00000392715.6:ENST00000559130.5:ENST00000559532.5:ENST00000558506.1:ENST00000558551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	30	2	2.18188	2.53553	2.88918	0.00600314	0.00212816	0.042887	0.0206577
chr4	67631707	67631771	5452798	0	-	0.375	(0.36,0.39]	chr4	436076	1	CDS	CDS:EXON_MRNA	UBA6	ENSG00000033178.13	ENST00000322244.10:ENST00000505673.2	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.18188	2.53553	2.88918	0.00600314	0.00212816	0.042887	0.0206577
chr15	41480786	41480885	14887012	0	+	0.474747	(0.455,0.49]	chr15	1169493	2	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.14	ENST00000389629.8	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.69295	2.53518	3.37741	0.018341	1.27402e-4	0.0945306	0.00241206
chr8	37860208	37860307	9794179	0	-	0.444444	(0.42,0.455]	chr8	740400	17	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.87908	2.53493	3.19078	0.0189336	0.00310864	0.0958835	0.0274272
chr5	138559863	138559955	6862398	0	-	0.423913	(0.42,0.455]	chr5	525205	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	38	2	1.96087	2.534805	3.10874	0.00983972	5.40397e-4	0.0615953	0.00688813
chr10	73072104	73072180	11568891	0	-	0.434211	(0.42,0.455]	chr10	880505	2	CDS	CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	18	114	2	2.20868	2.5347600000000003	2.86084	0.0019911	2.03472e-6	0.019572	7.26068e-5
chr10	80247497	80247590	11593728	0	-	0.548387	(0.53,0.59]	chr10	883127	4	EXON_PSEUDO	EXON_PSEUDO	EIF5AP4	ENSG00000234743.1	ENST00000441206.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	26	2	2.34461	2.534695	2.72478	0.0457008	0.00324675	0.168044	0.0282494
chr11	110231576	110231673	12597172	0	-	0.309278	(0.29,0.33]	chr11	976511	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5:ENST00000533961.1:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	2.43093	2.53453	2.63813	0.00803229	0.00205677	0.0528968	0.0194059
chr2	237098229	237098327	2451734	0	+	0.326531	(0.29,0.33]	chr2	221180	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COPS8	ENSG00000198612.11	ENST00000392008.6:ENST00000354371.7:ENST00000447464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	2.43093	2.53453	2.63813	0.00803229	0.00205677	0.0528968	0.0194059
chr1	53772328	53772408	1025611	0	-	0.3375	(0.33,0.36]	chr1	106356	1	CDS	CDS:EXON_MRNA	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	1.82006	2.534525	3.24899	0.0323353	1.31723e-5	0.135977	3.45454e-4
chr8	17230222	17230322	9729252	0	-	0.35	(0.33,0.36]	chr8	735884	54	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.31697	2.534445	2.75192	0.00966431	0.00318114	0.0606263	0.0267094
chr8	38210880	38210977	9292335	0	+	0.340206	(0.33,0.36]	chr8	710695	5	UTR3	UTR3:EXON_MRNA	BAG4	ENSG00000156735.11	ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.31697	2.534445	2.75192	0.00966431	0.00318114	0.0606263	0.0267094
chr1	38019317	38019383	143028	0	+	0.439394	(0.42,0.455]	chr1	17928	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UTP11	ENSG00000183520.12	ENST00000373014.5:ENST00000488453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.34191	2.534385	2.72686	0.0159091	0.00330337	0.0854674	0.027613
chrX	101412758	101412854	18786566	0	+	0.447917	(0.42,0.455]	chrX	1601436	8	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.34191	2.534385	2.72686	0.0159091	0.00330337	0.0854674	0.027613
chr12	51379290	51379387	13333044	0	-	0.556701	(0.53,0.59]	chr12	1047259	1	CDS	CDS:EXON_MRNA	GALNT6	ENSG00000139629.16	ENST00000543196.6:ENST00000356317.8:ENST00000603641.1:ENST00000604381.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	26	2	2.35511	2.5341449999999996	2.71318	0.0445399	0.00340745	0.172163	0.0283456
chr22	31621399	31621466	18473642	0	-	0.552239	(0.53,0.59]	chr22	1576735	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PISD:MIR7109	ENSG00000241878.11:ENSG00000284082.1	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000613748.1:ENST00000422020.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	3	26	2	2.35511	2.5341449999999996	2.71318	0.0445399	0.00340745	0.172163	0.0283456
chr3	129268931	129269000	3730542	0	+	0.536232	(0.53,0.59]	chr3	318949	1	CDS	CDS:EXON_MRNA:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000509889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	26	2	2.35511	2.5341449999999996	2.71318	0.0445399	0.00340745	0.172163	0.0283456
chrX	152736819	152736912	18912264	0	+	0.548387	(0.53,0.59]	chrX	1610509	7	CDS	CDS:EXON_MRNA:INTRON	MAGEA12:CSAG4	ENSG00000213401.10:ENSG00000242599.7	ENST00000393869.8:ENST00000357916.8:ENST00000361201.8:ENST00000393900.4	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	26	2	2.35511	2.5341449999999996	2.71318	0.0445399	0.00340745	0.172163	0.0283456
chr10	34391442	34391541	11450004	0	-	0.323232	(0.29,0.33]	chr10	873074	68	INTRON	INTRON	PARD3	ENSG00000148498.16	ENST00000545260.5:ENST00000545693.5:ENST00000374789.8:ENST00000374788.8:ENST00000346874.9:ENST00000374794.8:ENST00000350537.9:ENST00000374790.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	2.43001	2.533985	2.63796	0.00181907	6.9438e-4	0.0183913	0.00846751
chr3	33142645	33142743	3397818	0	+	0.530612	(0.53,0.59]	chr3	295508	3	UTR3	UTR3:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	8	58	2	2.49112	2.53386	2.5766	0.00129901	8.34608e-4	0.0142093	0.00978328
chr19	35648322	35648403	17305981	0	+	0.54321	(0.53,0.59]	chr19	1431248	1	UTR5	UTR5:EXON_MRNA	COX6B1	ENSG00000126267.11	ENST00000649813.2	protein_coding	protein_coding	protein_coding	protein_coding	18	122	2	2.38268	2.53363	2.68458	1.12536e-4	6.4443e-5	0.00199947	0.00137787
chr17	28945368	28945468	16489000	0	-	0.43	(0.42,0.455]	chr17	1348488	4	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	54	2	2.16396	2.5334	2.90284	0.00149934	4.27478e-4	0.0152367	0.00618684
chr3	156540933	156541031	4538641	0	-	0.295918	(0.29,0.33]	chr3	376076	15	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	10	44	2	2.22839	2.53335	2.83831	0.00486332	8.93913e-5	0.0374757	0.00165853
chr9	92210706	92210806	10736716	0	-	0.41	(0.39,0.42]	chr9	812217	6	UTR3	UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	169	2	2.19092	2.533295	2.87567	1.50309e-4	5.75424e-7	0.00273551	2.49726e-5
chr17	41763066	41763151	16543063	0	-	0.670588	(0.59,1]	chr17	1356285	2	CDS	CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8:ENST00000585793.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	63	2	2.01236	2.53328	3.0542	0.00765638	0.00663549	0.0503696	0.0456243
chr3	150543833	150543930	4517215	0	-	0.28866000000000003	[0,0.29]	chr3	374942	20	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	15	58	2	2.51953	2.533245	2.54696	6.71148e-4	8.63958e-5	0.00871633	0.00161041
chr16	88810069	88810143	16075171	0	-	0.608108	(0.59,1]	chr16	1291801	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	APRT	ENSG00000198931.11	ENST00000378364.8:ENST00000567713.5:ENST00000568319.5:ENST00000567391.5:ENST00000426324.6:ENST00000567057.5:ENST00000563655.5:ENST00000569616.1:ENST00000568575.1:ENST00000562464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	71	2	2.03921	2.5332350000000003	3.02726	0.0371471	2.90566e-4	0.151849	0.00427123
chr17	40628489	40628587	16539549	0	-	0.377551	(0.36,0.39]	chr17	1354810	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCE1:RP5-1028K7.3	ENSG00000073584.20:ENSG00000264058.2	ENST00000348513.12:ENST00000643318.1:ENST00000643255.1:ENST00000644527.1:ENST00000646242.1:ENST00000578112.6:ENST00000647508.1:ENST00000644701.1:ENST00000643030.1:ENST00000646401.1:ENST00000580419.6:ENST00000645227.1:ENST00000643378.1:ENST00000647294.1:ENST00000642576.1:ENST00000400122.8:ENST00000647515.1:ENST00000377808.9:ENST00000644523.1:ENST00000469334.6:ENST00000643683.1:ENST00000644443.1:ENST00000646283.1:ENST00000264640.9:ENST00000643893.1:ENST00000644909.1:ENST00000645152.1:ENST00000646856.1:ENST00000431889.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	23	2	1.66836	2.533195	3.39803	0.0474647	0.00122711	0.17993	0.0130695
chr1	205716790	205716889	1462023	0	-	0.434343	(0.42,0.455]	chr1	147460	41	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.15996	2.53306	2.90616	0.00365851	0.00162359	0.0299719	0.0169915
chr17	1679608	1679703	16401603	0	-	0.652632	(0.59,1]	chr17	1334959	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	9	110	2	2.4986	2.532935	2.56727	0.00349906	3.80286e-4	0.0296494	0.00527451
chr5	113015166	113015265	6153910	0	+	0.424242	(0.42,0.455]	chr5	480731	18	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	48	2	1.63927	2.532655	3.42604	0.0455517	1.46189e-5	0.175554	3.76794e-4
chr7	150322733	150322829	8614610	0	+	0.46875	(0.455,0.49]	chr7	657670	2	UTR5	UTR5:EXON_MRNA	ZBED6CL	ENSG00000188707.6	ENST00000343855.6	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.52734	2.53256	2.53778	0.00792433	0.00105636	0.0523592	0.0117237
chr17	67945866	67945958	16333329	0	+	0.434783	(0.42,0.455]	chr17	1325046	6	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.15137	2.53255	2.91373	0.0123864	0.00892357	0.07101	0.0567495
chr3	47586248	47586346	4161743	0	-	0.428571	(0.42,0.455]	chr3	348302	11	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.15137	2.53255	2.91373	0.0123864	0.00892357	0.07101	0.0567495
chr4	145123477	145123538	5146163	0	+	0.42623	(0.42,0.455]	chr4	416377	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ABCE1	ENSG00000164163.11	ENST00000296577.9:ENST00000507193.5:ENST00000506506.5:ENST00000515678.5:ENST00000510321.1:ENST00000504683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	2.15137	2.53255	2.91373	0.0123864	0.00892357	0.07101	0.0567495
chr5	151771961	151772040	6299403	0	+	0.582278	(0.53,0.59]	chr5	491852	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000627077.2:ENST00000678976.1:ENST00000677408.1:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000518726.5:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000520006.2:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677369.1:ENST00000677284.1:ENST00000676894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	40	2	2.2596	2.532375	2.80515	0.0185443	6.42453e-4	0.0948733	0.00850441
chr1	37958185	37958263	949974	0	-	0.397436	(0.39,0.42]	chr1	100060	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000487062.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	2.38186	2.5322649999999998	2.68267	0.00601449	0.00125229	0.0434483	0.0133064
chr1	148750081	148750178	458199	0	+	0.340206	(0.33,0.36]	chr1	45663	7	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	9	45	2	1.93923	2.53217	3.12511	0.0142064	3.17836e-5	0.0777259	7.06287e-4
chrX	53533028	53533121	19077144	0	-	0.537634	(0.53,0.59]	chrX	1622623	11	UTR3	UTR3:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	7	53	2	1.94437	2.532145	3.11992	0.0143432	1.09102e-4	0.0783202	0.00194222
chr20	45641271	45641370	17986383	0	-	0.727273	(0.59,1]	chr20	1523961	9	EXON_PSEUDO	EXON_PSEUDO	RPS2P7	ENSG00000235508.3	ENST00000447334.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	176	2	2.29552	2.5320099999999996	2.7685	5.90259e-4	1.42944e-4	0.00743488	0.00262111
chr20	50081993	50082090	18004127	0	-	0.515464	(0.49,0.53]	chr20	1525944	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	186	2	2.39402	2.53193	2.66984	5.8379e-5	2.52243e-6	0.00129108	8.74348e-5
chr5	144170541	144170627	6881868	0	-	0.55814	(0.53,0.59]	chr5	527241	4	UTR5	UTR5:EXON_MRNA	YIPF5	ENSG00000145817.17	ENST00000274496.10:ENST00000448443.6:ENST00000513112.5:ENST00000519064.5:ENST00000522203.5:ENST00000508754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.515	2.53172	2.54844	0.0292633	0.00663226	0.129773	0.0461575
chr6	34589570	34589670	7674096	0	-	0.54	(0.53,0.59]	chr6	588118	24	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	3	25	2	2.515	2.53172	2.54844	0.0292633	0.00663226	0.129773	0.0461575
chr7	6374526	6374595	8113771	0	+	0.623188	(0.59,1]	chr7	620384	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RAC1	ENSG00000136238.18	ENST00000348035.9:ENST00000356142.4:ENST00000488373.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	75	2	2.45126	2.53138	2.6115	0.00584247	0.00209267	0.0422426	0.0204266
chr15	48879313	48879408	14921717	0	+	0.294737	(0.29,0.33]	chr15	1173117	7	UTR3	UTR3:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.74619	2.5313600000000003	3.31653	0.0509174	0.00261621	0.181793	0.0238929
chr17	57974654	57974736	16611361	0	-	0.414634	(0.39,0.42]	chr17	1364355	2	CDS	CDS:EXON_MRNA	VEZF1	ENSG00000136451.9	ENST00000258963.7:ENST00000581208.2:ENST00000584396.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.34349	2.531305	2.71912	0.0169272	0.0163125	0.0890655	0.0866586
chr5	177296944	177297043	6406763	0	+	0.393939	(0.39,0.42]	chr5	498036	16	UTR3	UTR3:EXON_MRNA	NSD1	ENSG00000165671.21	ENST00000354179.8:ENST00000439151.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.34349	2.531305	2.71912	0.0169272	0.0163125	0.0890655	0.0866586
chr10	63213867	63213965	11531880	0	-	0.479592	(0.455,0.49]	chr10	878549	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JMJD1C	ENSG00000171988.19	ENST00000639129.1:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	33	2	1.79605	2.53114	3.26623	0.0427708	2.31662e-4	0.168094	0.00354314
chr5	33456001	33456066	5927393	0	+	0.369231	(0.36,0.39]	chr5	464397	1	CDS	CDS:UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000504698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	38	2	2.17306	2.53112	2.88918	0.00224077	0.00212816	0.0207282	0.0206577
chr1	95192560	95192659	362112	0	+	0.323232	(0.29,0.33]	chr1	35683	8	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	8	40	2	2.17855	2.531015	2.88348	0.0183673	6.59632e-5	0.0928041	0.00128696
chr1	52056288	52056379	191961	0	+	0.648352	(0.59,1]	chr1	24615	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000524414.5:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	30	2	2.28778	2.53098	2.77418	0.0556537	0.0160729	0.191528	0.0860154
chr6	73373185	73373263	7795158	0	-	0.448718	(0.42,0.455]	chr6	597080	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	OOEP:RPL39P3	ENSG00000203907.10:ENSG00000235174.1	ENST00000370363.5:ENST00000441145.1:ENST00000424573.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	35	184	2	2.32683	2.53093	2.73503	2.08728e-5	5.36979e-6	5.03955e-4	1.79904e-4
chr5	83054520	83054619	6673222	0	-	0.363636	(0.36,0.39]	chr5	515109	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	31	2	1.5966	2.530785	3.46497	0.021097	0.00105709	0.102041	0.0123035
chr9	97927383	97927478	10759624	0	-	0.326316	(0.29,0.33]	chr9	814685	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	19	77	2	2.52014	2.53071	2.54128	1.98942e-4	4.0904e-5	0.00339074	8.77439e-4
chr12	93399976	93400076	13019153	0	+	0.35	(0.33,0.36]	chr12	1013446	7	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	2.22102	2.5305	2.83998	0.00736622	2.04094e-4	0.0490627	0.0032041
chr21	39178547	39178647	18255567	0	-	0.43	(0.42,0.455]	chr21	1547880	2	CDS	CDS:UTR3:EXON_MRNA	PSMG1	ENSG00000183527.12	ENST00000331573.8:ENST00000481921.5:ENST00000411828.5:ENST00000380900.2:ENST00000431628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	53	2	2.11744	2.530345	2.94325	0.00497755	1.00632e-4	0.0381953	0.00181216
chr2	85630795	85630870	1925464	0	+	0.466667	(0.455,0.49]	chr2	181236	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000613444.4:ENST00000450066.6:ENST00000409025.5:ENST00000409470.5:ENST00000323701.11:ENST00000409766.7:ENST00000493829.5:ENST00000467885.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	2.52734	2.5301	2.53286	0.0282409	0.00792433	0.124386	0.0523592
chr6	36923539	36923638	7135745	0	+	0.575758	(0.53,0.59]	chr6	549805	2	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.16037	2.5297650000000003	2.89916	0.0254312	0.00890406	0.117089	0.0565003
chr3	14198212	14198309	3319947	0	+	0.319588	(0.29,0.33]	chr3	292182	2	UTR3	UTR3:EXON_MRNA	LSM3	ENSG00000170860.4	ENST00000306024.4	protein_coding	protein_coding	protein_coding	protein_coding	12	51	2	2.28665	2.529525	2.7724	0.0022585	6.68288e-5	0.0214524	0.00130254
chr12	47779062	47779162	12860193	0	+	0.58	(0.53,0.59]	chr12	998316	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC48A1	ENSG00000211584.14	ENST00000548498.5:ENST00000547002.5:ENST00000549243.5:ENST00000442892.2:ENST00000551301.1:ENST00000442218.3:ENST00000461620.1:ENST00000476104.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.14885	2.529315	2.90978	0.0262993	0.00857883	0.117164	0.0552386
chr1	169464490	169464587	1358085	0	-	0.329897	(0.29,0.33]	chr1	138648	7	UTR3	UTR3:EXON_MRNA	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000643377.1:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	11	2	2.38576	2.5292649999999997	2.67277	0.0439193	0.0255386	0.163572	0.117089
chr2	64093334	64093431	2703537	0	-	0.298969	(0.29,0.33]	chr2	241114	8	UTR3	UTR3:EXON_MRNA	PELI1	ENSG00000197329.12	ENST00000358912.5	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.38576	2.5292649999999997	2.67277	0.0439193	0.0255386	0.163572	0.117089
chr8	132812119	132812217	9620208	0	+	0.295918	(0.29,0.33]	chr8	729171	11	UTR3	UTR3:EXON_MRNA:INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395383.5:ENST00000361997.9:ENST00000395386.7:ENST00000315808.14:ENST00000337920.8:ENST00000395376.5:ENST00000395390.6:ENST00000486199.5:ENST00000395374.1:ENST00000469979.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	11	2	2.38576	2.5292649999999997	2.67277	0.0439193	0.0255386	0.163572	0.117089
chr8	140529845	140529945	10132141	0	-	0.33	(0.29,0.33]	chr8	760954	98	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.38576	2.5292649999999997	2.67277	0.0439193	0.0255386	0.163572	0.117089
chr9	93679109	93679204	10364374	0	+	0.294737	(0.29,0.33]	chr9	780314	16	UTR3	UTR3:EXON_MRNA	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.38576	2.5292649999999997	2.67277	0.0439193	0.0255386	0.163572	0.117089
chr7	50402913	50403013	8279160	0	+	0.42	(0.39,0.42]	chr7	630737	24	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.3855	2.52923	2.67296	0.0049615	0.00159022	0.0368419	0.0168452
chr6	31815613	31815684	7116658	0	+	0.690141	(0.59,1]	chr6	546202	2	UTR5	UTR5:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	9	95	2	1.51843	2.5292	3.53997	0.0276347	9.75839e-5	0.122497	0.00193292
chr17	1660762	1660827	16401380	0	-	0.476923	(0.455,0.49]	chr17	1334878	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	1.96875	2.52918	3.08961	0.0480352	0.00445157	0.180552	0.0340751
chr7	74744757	74744849	8338099	0	+	0.478261	(0.455,0.49]	chr7	635459	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GTF2I	ENSG00000263001.7	ENST00000650807.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000620631.4:ENST00000438130.6:ENST00000473333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	1.96875	2.52918	3.08961	0.0480352	0.00445157	0.180552	0.0340751
chr9	92258853	92258925	10737225	0	-	0.472222	(0.455,0.49]	chr9	812292	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	1.96875	2.52918	3.08961	0.0480352	0.00445157	0.180552	0.0340751
chr7	105113045	105113139	8449888	0	+	0.553191	(0.53,0.59]	chr7	645366	14	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	51	2	2.47886	2.528765	2.57867	0.00198261	0.00138105	0.0195088	0.014307
chr3	23920592	23920691	3358573	0	+	0.343434	(0.33,0.36]	chr3	294139	12	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	31	139	2	2.33918	2.5286799999999996	2.71818	9.70087e-5	1.70491e-6	0.00192518	6.25986e-5
chr7	151074208	151074293	8617515	0	+	0.588235	(0.53,0.59]	chr7	658374	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	49	2	1.57718	2.528545	3.47991	0.0353812	6.7738e-5	0.146532	0.0013157
chr7	115833272	115833322	9019529	0	-	0.44	(0.42,0.455]	chr7	689075	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199224.1	ENST00000362354.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	15	82	2	2.25717	2.528495	2.79982	6.12524e-4	2.88753e-5	0.0076411	7.23839e-4
chr6	38676902	38677000	7689639	0	-	0.285714	[0,0.29]	chr6	589572	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	112	2	2.00517	2.5284	3.05163	4.63197e-4	4.94915e-7	0.00655972	2.18815e-5
chr2	101266811	101266879	1957400	0	+	0.367647	(0.36,0.39]	chr2	185959	3	CDS	CDS:EXON_MRNA	CNOT11	ENSG00000158435.8	ENST00000289382.8:ENST00000420107.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.38564	2.52837	2.6711	0.0476159	0.00434596	0.17993	0.0335517
chrX	12975109	12975205	18584841	0	+	0.677083	(0.59,1]	chrX	1587304	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7	protein_coding	protein_coding	protein_coding	protein_coding	12	142	2	1.70729	2.528055	3.34882	0.0113893	1.97552e-5	0.0668123	5.29643e-4
chr19	538145	538245	17188098	0	+	0.52	(0.49,0.53]	chr19	1410709	6	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.26641	2.528015	2.78962	0.0190546	0.0129044	0.093872	0.0725185
chr7	143598933	143599033	8582884	0	+	0.51	(0.49,0.53]	chr7	655911	10	EXON_PSEUDO	EXON_PSEUDO	TCAF1P1	ENSG00000223459.6	ENST00000414990.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	3	21	2	2.26641	2.528015	2.78962	0.0190546	0.0129044	0.093872	0.0725185
chr17	38753255	38753334	16217776	0	+	0.607595	(0.59,1]	chr17	1310737	1	CDS	CDS:EXON_MRNA	PSMB3	ENSG00000277791.5	ENST00000619426.5:ENST00000610434.4:ENST00000613870.4:ENST00000620309.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	134	2	1.47272	2.527995	3.58327	0.0488838	4.7067e-6	0.175974	1.62873e-4
chr3	196349346	196349445	4664958	0	-	0.353535	(0.33,0.36]	chr3	385869	18	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.51887	2.5279949999999998	2.53712	0.0358636	0.00766322	0.147298	0.0503696
chr4	83461188	83461287	5500202	0	-	0.343434	(0.33,0.36]	chr4	440770	18	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	2.51887	2.5279949999999998	2.53712	0.0358636	0.00766322	0.147298	0.0503696
chr6	107871012	107871110	7881552	0	-	0.336735	(0.33,0.36]	chr6	603337	34	UTR3	UTR3:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000459782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.51887	2.5279949999999998	2.53712	0.0358636	0.00766322	0.147298	0.0503696
chr1	237603008	237603107	777829	0	+	0.515152	(0.49,0.53]	chr1	78185	5	INTRON	INTRON	RYR2	ENSG00000198626.17	ENST00000366574.7:ENST00000360064.7	protein_coding	protein_coding	protein_coding	protein_coding	216	1380	2	1.75043	2.52776	3.30509	1.93849e-4	9.9021e-11	0.00332542	1.34998e-8
chr18	13028166	13028266	16764404	0	+	0.42	(0.39,0.42]	chr18	1382833	86	INTRON	INTRON	CEP192	ENSG00000101639.18	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.49701	2.5277250000000002	2.55844	0.0339607	0.0263695	0.141431	0.117164
chr2	239990134	239990182	3245667	0	-	0.395833	(0.39,0.42]	chr2	286031	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.49701	2.5277250000000002	2.55844	0.0339607	0.0263695	0.141431	0.117164
chrX	141908647	141908733	18883553	0	+	0.395349	(0.39,0.42]	chrX	1608999	5	CDS	CDS:EXON_MRNA	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.49701	2.5277250000000002	2.55844	0.0339607	0.0263695	0.141431	0.117164
chr12	7919923	7920022	13193162	0	-	0.424242	(0.42,0.455]	chr12	1033481	8	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	43	2	1.97508	2.527465	3.07985	0.0147202	1.37948e-4	0.0802571	0.00233981
chr8	17230619	17230719	9729256	0	-	0.36	(0.33,0.36]	chr8	735884	58	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9:ENST00000518541.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.16995	2.527445	2.88494	0.0124739	6.89291e-4	0.0713206	0.00876781
chr5	134962055	134962153	6232940	0	+	0.5	(0.49,0.53]	chr5	485541	15	UTR3	UTR3:EXON_MRNA:INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	34	2	2.30264	2.527395	2.75215	0.0165402	8.79689e-4	0.087611	0.0107294
chr3	101576579	101576671	4331341	0	-	0.532609	(0.53,0.59]	chr3	361271	2	EXON_PSEUDO	EXON_PSEUDO	RP11-234A1.1	ENSG00000242299.1	ENST00000496294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	24	155	2	1.90205	2.52735	3.15265	9.63786e-4	1.16534e-6	0.0107863	5.00117e-5
chr9	131260624	131260722	10870363	0	-	0.642857	(0.59,1]	chr9	824566	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	54	2	1.61229	2.527335	3.44238	0.0434296	0.00158239	0.162491	0.0167793
chr7	151074398	151074472	8617518	0	+	0.540541	(0.53,0.59]	chr7	658376	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	41	2	2.16037	2.52732	2.89427	0.0254312	3.98634e-4	0.117089	0.00546791
chr15	44380805	44380890	14898246	0	+	0.423529	(0.42,0.455]	chr15	1171520	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1:ENST00000559550.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	49	2	2.08565	2.52712	2.96859	0.00331964	2.9375e-4	0.0277324	0.00465315
chrX	154777141	154777232	18918816	0	+	0.384615	(0.36,0.39]	chrX	1612327	4	UTR3	UTR3:EXON_MRNA	DKC1	ENSG00000130826.18	ENST00000620277.4:ENST00000369550.10	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.29974	2.5271049999999997	2.75447	0.00926291	3.28568e-4	0.0586162	0.00467693
chr16	24823903	24824000	15603092	0	+	0.340206	(0.33,0.36]	chr16	1237217	2	UTR3	UTR3:EXON_MRNA:INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000569098.1:ENST00000464539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.13965	2.526745	2.91384	0.0297101	0.0021527	0.129986	0.0208395
chr21	44770776	44770876	18276941	0	-	0.28	[0,0.29]	chr21	1550170	23	UTR3	UTR3:EXON_MRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000481546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	43	2	1.90672	2.52664	3.14656	0.00631112	2.61296e-5	0.0447391	6.71231e-4
chr14	73198030	73198129	14395089	0	+	0.434343	(0.42,0.455]	chr14	1124535	1	CDS	CDS:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000555386.5:ENST00000557511.5:ENST00000553855.5:ENST00000406768.1:ENST00000554995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.48259	2.5265500000000003	2.57051	0.0265466	0.0031851	0.120071	0.0267166
chr5	154815363	154815460	6315024	0	+	0.515464	(0.49,0.53]	chr5	492515	14	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.10817	2.5261	2.94403	0.00798134	0.00122634	0.0527008	0.0130695
chr1	77947831	77947925	1112658	0	-	0.287234	[0,0.29]	chr1	111852	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000489495.5:ENST00000294623.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	13	2	2.40395	2.52609	2.64823	0.0216669	0.0210081	0.103121	0.101116
chr12	50987837	50987935	13330000	0	-	0.234694	[0,0.29]	chr12	1046718	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	13	2	2.40395	2.52609	2.64823	0.0216669	0.0210081	0.103121	0.101116
chr7	10933692	10933792	8678212	0	-	0.28	[0,0.29]	chr7	663710	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NDUFA4	ENSG00000189043.10	ENST00000339600.6:ENST00000482299.1:ENST00000470761.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	13	2	2.40395	2.52609	2.64823	0.0216669	0.0210081	0.103121	0.101116
chr10	73007672	73007764	11568234	0	-	0.347826	(0.33,0.36]	chr10	880432	6	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	42	2	1.70359	2.525955	3.34832	0.0245566	2.58174e-5	0.114841	5.98209e-4
chr11	57491715	57491788	12394747	0	-	0.534247	(0.53,0.59]	chr11	958755	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000529452.5:ENST00000533515.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	29	2	2.14205	2.525915	2.90978	0.0123179	0.00857883	0.070688	0.0552386
chr12	53446059	53446156	12886381	0	+	0.536082	(0.53,0.59]	chr12	1002393	1	UTR3	UTR3:EXON_MRNA:INTRON	PRR13:RP11-793H13.8	ENSG00000205352.11:ENSG00000257379.1	ENST00000549924.5:ENST00000551003.5:ENST00000429243.7:ENST00000547717.1:ENST00000549068.5:ENST00000546581.5:ENST00000549581.5:ENST00000547368.5:ENST00000379786.8:ENST00000549135.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	29	2	2.14205	2.525915	2.90978	0.0123179	0.00857883	0.070688	0.0552386
chr19	975641	975740	17190440	0	+	0.535354	(0.53,0.59]	chr19	1411266	37	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	1.48274	2.525685	3.56863	0.0371726	3.93456e-5	0.151929	8.48445e-4
chr12	69586269	69586344	12943400	0	+	0.52	(0.49,0.53]	chr12	1008954	1	CDS	CDS:UTR5:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000546859.5:ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000550455.5:ENST00000549933.5:ENST00000544368.6:ENST00000551899.5:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	34	2	2.38683	2.52561	2.66439	0.012654	0.00134122	0.0718207	0.0139818
chr10	43394629	43394688	11461840	0	-	0.440678	(0.42,0.455]	chr10	873963	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	30	2	2.24157	2.525585	2.8096	0.0087798	0.00253237	0.0562439	0.0233955
chr16	51646956	51647044	15663195	0	+	0.295455	(0.29,0.33]	chr16	1244826	3	EXON_LNCRNA	EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000562726.1	protein_coding	processed_transcript	protein_coding	processed_transcript	16	64	2	2.37906	2.52549	2.67192	2.43559e-4	1.55169e-4	0.00399705	0.00258416
chr4	52713469	52713569	4829919	0	+	0.36	(0.33,0.36]	chr4	398211	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DANCR:LINC01618	ENSG00000226950.8:ENSG00000250302.3	ENST00000411630.7:ENST00000650700.1:ENST00000441504.2:ENST00000676012.1:ENST00000675590.1:ENST00000675705.1:ENST00000676450.1:ENST00000444958.2:ENST00000676262.1:ENST00000675988.1:ENST00000676199.1:ENST00000425653.2:ENST00000675191.1:ENST00000653147.1	lncRNA	lncRNA	lncRNA	lncRNA	4	20	2	2.4164	2.52548	2.63456	0.011989	0.00707461	0.0700473	0.0478528
chr17	45103035	45103121	16237739	0	+	0.55814	(0.53,0.59]	chr17	1315018	2	CDS	CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000590114.6:ENST00000592654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.26097	2.525385	2.7898	0.0128364	0.00389622	0.0719798	0.0313006
chr1	108638626	108638726	394970	0	+	0.4	(0.39,0.42]	chr1	38052	36	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.18155	2.5252499999999998	2.86895	0.0283931	0.00177945	0.127654	0.0172974
chr7	88210056	88210130	8914259	0	-	0.418919	(0.39,0.42]	chr7	680433	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRI	ENSG00000075142.14	ENST00000265729.7:ENST00000419179.5:ENST00000472930.6:ENST00000490437.5:ENST00000394641.7:ENST00000431660.5:ENST00000457606.5:ENST00000486860.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.18155	2.5252499999999998	2.86895	0.0283931	0.00177945	0.127654	0.0172974
chr1	149851113	149851213	464856	0	+	0.67	(0.59,1]	chr1	46803	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC19	ENSG00000272196.2	ENST00000607355.2	protein_coding	protein_coding	protein_coding	protein_coding	32	441	2	1.87442	2.525195	3.17597	0.00227456	5.51221e-7	0.0209546	2.68756e-5
chr1	30981311	30981405	916791	0	-	0.56383	(0.53,0.59]	chr1	96051	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526128.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	24	2	2.0404	2.52515	3.0099	0.0362529	0.00600486	0.148525	0.042887
chr3	49012762	49012859	3459268	0	+	0.56701	(0.53,0.59]	chr3	301931	11	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000489684.2:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.0404	2.52515	3.0099	0.0362529	0.00600486	0.148525	0.042887
chr1	241635953	241636032	1578074	0	-	0.341772	(0.33,0.36]	chr1	157616	3	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3:ENST00000638018.1:ENST00000638160.1:ENST00000638121.1:ENST00000636025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.28465	2.525075	2.7655	0.0188404	0.0175892	0.0958835	0.0918323
chr10	111012985	111013082	11254057	0	+	0.340206	(0.33,0.36]	chr10	857448	13	UTR3	UTR3:EXON_MRNA	SHOC2	ENSG00000108061.12	ENST00000369452.9:ENST00000265277.9:ENST00000451838.1	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.28465	2.525075	2.7655	0.0188404	0.0175892	0.0958835	0.0918323
chr3	177020931	177021030	4593436	0	-	0.353535	(0.33,0.36]	chr3	379622	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	2.28465	2.525075	2.7655	0.0188404	0.0175892	0.0958835	0.0918323
chr3	184027359	184027458	4622780	0	-	0.484848	(0.455,0.49]	chr3	381686	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	46	225	2	1.99921	2.525	3.05079	1.2057e-4	2.39267e-7	0.00210079	1.32863e-5
chr1	29097870	29097935	121422	0	+	0.523077	(0.49,0.53]	chr1	14727	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000646871.1:ENST00000490308.2:ENST00000650132.1:ENST00000649992.1:ENST00000460378.1:ENST00000462032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.18239	2.5247450000000002	2.8671	0.024394	0.0100489	0.111797	0.0623334
chr12	6750224	6750305	13188378	0	-	0.518519	(0.49,0.53]	chr12	1032682	2	CDS	CDS:EXON_MRNA	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000435120.5:ENST00000541305.1:ENST00000539187.5:ENST00000537126.5:ENST00000541346.1:ENST00000540710.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.18239	2.5247450000000002	2.8671	0.024394	0.0100489	0.111797	0.0623334
chr15	51876169	51876269	14933619	0	+	0.52	(0.49,0.53]	chr15	1174073	5	INTRON	INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.18239	2.5247450000000002	2.8671	0.024394	0.0100489	0.111797	0.0623334
chr19	39979900	39979984	17327718	0	+	0.52381	(0.49,0.53]	chr19	1435389	2	CDS	CDS:EXON_MRNA	PSMC4	ENSG00000013275.8	ENST00000157812.7:ENST00000455878.2:ENST00000593455.5:ENST00000601697.5:ENST00000596386.1:ENST00000601194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.18239	2.5247450000000002	2.8671	0.024394	0.0100489	0.111797	0.0623334
chr11	65078327	65078424	12421413	0	-	0.536082	(0.53,0.59]	chr11	963673	10	UTR3	UTR3:EXON_MRNA:INTRON	CDCA5	ENSG00000146670.10	ENST00000529290.5:ENST00000525464.1:ENST00000533015.5:ENST00000275517.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	24	2	2.0289	2.5247200000000003	3.02054	0.0373899	0.00577011	0.146698	0.0426551
chr2	218277632	218277661	3186672	0	-	0.551724	(0.53,0.59]	chr2	279920	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6:ENST00000439306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.0289	2.5247200000000003	3.02054	0.0373899	0.00577011	0.146698	0.0426551
chr7	106659799	106659898	8981146	0	-	0.484848	(0.455,0.49]	chr7	687224	56	UTR3	UTR3:EXON_MRNA:INTRON	CTB-111H14.1:CCDC71L	ENSG00000243797.6:ENSG00000253276.4	ENST00000490856.5:ENST00000592441.1:ENST00000523505.3:ENST00000315965.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	35	2	2.30139	2.5247200000000003	2.74805	0.0530131	3.3051e-4	0.195536	0.00470169
chr19	16566584	16566657	17491733	0	-	0.561644	(0.53,0.59]	chr19	1466528	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000470077.1:ENST00000488894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	24	2	2.2596	2.5247	2.7898	0.0185443	0.0128364	0.0948733	0.0719798
chrX	47635893	47635987	19060913	0	-	0.553191	(0.53,0.59]	chrX	1619983	5	UTR3	UTR3:EXON_MRNA	ELK1	ENSG00000126767.18	ENST00000376983.8:ENST00000247161.7	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.2596	2.5247	2.7898	0.0185443	0.0128364	0.0948733	0.0719798
chr1	23321527	23321595	894825	0	-	0.323529	(0.29,0.33]	chr1	92844	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	1.71387	2.524655	3.33544	0.0355849	0.0016889	0.147262	0.0165476
chr7	25123007	25123106	8730808	0	-	0.313131	(0.29,0.33]	chr7	666449	45	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7	protein_coding	protein_coding	protein_coding	protein_coding	17	68	2	2.12305	2.524645	2.92624	0.00134195	1.12581e-5	0.0145367	3.04525e-4
chr21	46161378	46161478	18280632	0	-	0.66	(0.59,1]	chr21	1550787	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SPATC1L	ENSG00000160284.15	ENST00000330205.10:ENST00000291672.6	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	1.87297	2.524565	3.17616	0.0308113	0.00434232	0.130016	0.0339139
chr20	50584269	50584366	17816225	0	+	0.42268	(0.42,0.455]	chr20	1507152	17	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	1.58516	2.524505	3.46385	0.0389398	7.26611e-5	0.158547	0.00139386
chr16	2767768	2767866	15494953	0	+	0.571429	(0.53,0.59]	chr16	1227802	64	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000572883.1:ENST00000572721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	170	2	2.31001	2.524435	2.73886	1.1505e-4	6.35157e-6	0.00203948	2.07228e-4
chr12	31280969	31281066	13279787	0	-	0.329897	(0.29,0.33]	chr12	1041229	5	UTR3	UTR3:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	1.86069	2.524365	3.18804	0.021654	3.92193e-4	0.103926	0.00539186
chr17	35626694	35626768	16206507	0	+	0.391892	(0.39,0.42]	chr17	1309051	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	44	2	2.09048	2.52417	2.95786	0.00224175	0.00138212	0.0207345	0.0149186
chr6	67883676	67883776	7784097	0	-	0.5	(0.49,0.53]	chr6	596223	16	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	53	307	2	2.43936	2.52415	2.60894	6.48916e-6	1.23837e-6	2.11321e-4	4.79731e-5
chr2	222908872	222908964	2405994	0	+	0.304348	(0.29,0.33]	chr2	216556	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	98	2	2.12305	2.5240650000000002	2.92508	0.00134195	1.04519e-6	0.0145367	4.15268e-5
chr22	20953551	20953649	18300219	0	+	0.234694	[0,0.29]	chr22	1553647	39	UTR3	UTR3:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	86	2	2.2816	2.52392	2.76624	3.71259e-4	6.00196e-6	0.00557284	1.80624e-4
chr4	94289729	94289827	4982808	0	+	0.316327	(0.29,0.33]	chr4	407331	3	UTR3	UTR3:EXON_MRNA	SMARCAD1	ENSG00000163104.18	ENST00000359052.8:ENST00000457823.6:ENST00000354268.9:ENST00000394961.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	2.45373	2.52384	2.59395	0.0249836	0.0156405	0.114013	0.084273700000000007
chr3	9476287	9476385	3298373	0	+	0.418367	(0.39,0.42]	chr3	289609	3	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000466242.5:ENST00000682236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.48908	2.5237600000000002	2.55844	0.0263695	0.0101318	0.117164	0.0626311
chr12	54284861	54284961	12891478	0	+	0.34	(0.33,0.36]	chr12	1002945	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000677778.1:ENST00000677840.1:ENST00000677666.1:ENST00000677061.1:ENST00000677072.1:ENST00000676661.1:ENST00000679251.1:ENST00000678199.1:ENST00000676925.1:ENST00000677832.1:ENST00000678093.1:ENST00000678687.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	66	269	2	2.27251	2.52369	2.77487	8.22495e-6	2.85455e-7	2.34786e-4	1.53987e-5
chr8	47976876	47976975	9316302	0	+	0.262626	[0,0.29]	chr8	713600	2	UTR3	UTR3:EXON_MRNA	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000521151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	61	206	2	2.14571	2.523595	2.90148	6.56749e-5	3.21739e-8	0.00128176	2.32938e-6
chr1	30871337	30871436	915882	0	-	0.525253	(0.49,0.53]	chr1	95914	20	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr12	56143280	56143333	12898425	0	+	0.509434	(0.49,0.53]	chr12	1004309	2	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr13	45988863	45988941	14008409	0	-	0.525641	(0.49,0.53]	chr13	1098360	2	CDS	CDS:EXON_MRNA	ZC3H13	ENSG00000123200.17	ENST00000242848.8:ENST00000679008.1:ENST00000282007.7	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr20	58994109	58994174	17841407	0	+	0.523077	(0.49,0.53]	chr20	1508887	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NELFCD	ENSG00000101158.15	ENST00000602795.6:ENST00000652272.2:ENST00000460601.5:ENST00000477741.5:ENST00000474543.5:ENST00000478389.5:ENST00000479207.1:ENST00000486263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr3	52693257	52693329	3479470	0	+	0.5	(0.49,0.53]	chr3	305058	2	CDS	CDS:EXON_MRNA	GNL3	ENSG00000163938.17	ENST00000394799.6:ENST00000418458.6:ENST00000496254.5:ENST00000497356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr5	43628199	43628293	5960181	0	+	0.5	(0.49,0.53]	chr5	467061	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000660752.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000657172.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1:ENST00000503651.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr5	141516850	141516950	6875041	0	-	0.53	(0.49,0.53]	chr5	526352	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1:ENST00000518047.5:ENST00000468119.3:ENST00000643312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr6	135181307	135181375	7414695	0	+	0.5	(0.49,0.53]	chr6	568243	1	UTR5	UTR5:EXON_MRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.48488	2.523355	2.56183	0.032052	0.0261296	0.133433	0.118976
chr1	19145792	19145862	876370	0	-	0.528571	(0.49,0.53]	chr1	90149	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000465036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.81659	2.523325	3.23006	0.0376859	0.00253719	0.147713	0.0233955
chr1	40414158	40414240	153951	0	+	0.52439	(0.49,0.53]	chr1	19257	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2:ENST00000487871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.81659	2.523325	3.23006	0.0376859	0.00253719	0.147713	0.0233955
chr1	54536891	54536987	200697	0	+	0.510417	(0.49,0.53]	chr1	25652	2	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P63	ENSG00000227453.1	ENST00000427917.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	25	2	1.81659	2.523325	3.23006	0.0376859	0.00253719	0.147713	0.0233955
chrX	40074203	40074301	19045134	0	-	0.530612	(0.53,0.59]	chrX	1618754	20	CDS	CDS:EXON_MRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4:ENST00000490976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	45	2	2.47	2.5233	2.5766	0.0089333	8.34608e-4	0.0567495	0.00978328
chr1	38998240	38998311	145689	0	+	0.507042	(0.49,0.53]	chr1	18058	2	CDS	CDS:EXON_MRNA:INTRON	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.92759	2.523255	3.11892	0.0267071	0.00398244	0.118504	0.0322851
chr7	102857449	102857525	8440189	0	+	0.526316	(0.49,0.53]	chr7	644861	1	EXON_SMALL	EXON_SMALL	RN7SKP198	ENSG00000238324.1	ENST00000459286.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	4	25	2	1.92759	2.523255	3.11892	0.0267071	0.00398244	0.118504	0.0322851
chr17	68042084	68042173	16333800	0	+	0.449438	(0.42,0.455]	chr17	1325123	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	62	2	1.87159	2.523115	3.17464	0.0214479	7.70757e-6	0.102998	2.21228e-4
chr22	38486358	38486440	18509623	0	-	0.512195	(0.49,0.53]	chr22	1579959	5	CDS	CDS:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	46	2	1.94299	2.5231	3.10321	0.0152714	1.1948e-4	0.0828908	0.00208475
chr19	12943455	12943536	17238394	0	+	0.518519	(0.49,0.53]	chr19	1421063	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000588454.6:ENST00000586803.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	55	2	2.42839	2.52308	2.61777	0.00172617	5.32316e-4	0.0178146	0.00683582
chr1	51448045	51448135	1015193	0	-	0.488889	(0.455,0.49]	chr1	105065	1	CDS	CDS:EXON_MRNA	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.35515	2.52284	2.69053	0.0182983	0.0140117	0.0925808	0.0767536
chr17	40171883	40171979	16223510	0	+	0.46875	(0.455,0.49]	chr17	1311972	16	UTR3	UTR3:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.35515	2.52284	2.69053	0.0182983	0.0140117	0.0925808	0.0767536
chr2	202883674	202883741	3128710	0	-	0.477612	(0.455,0.49]	chr2	276627	2	CDS	CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000464820.1:ENST00000463824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.35515	2.52284	2.69053	0.0182983	0.0140117	0.0925808	0.0767536
chrX	48792138	48792221	18693001	0	+	0.60241	(0.59,1]	chrX	1594399	3	CDS	CDS:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	15	175	2	2.22891	2.522705	2.8165	8.37657e-4	1.09368e-4	0.00981548	0.00210293
chr3	33670502	33670602	4115066	0	-	0.38	(0.36,0.39]	chr3	343947	66	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.20444	2.522665	2.84089	0.0237257	0.0128123	0.109365	0.0719798
chrX	41123549	41123628	18668110	0	+	0.367089	(0.36,0.39]	chrX	1591911	2	UTR5	UTR5:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.20444	2.522665	2.84089	0.0237257	0.0128123	0.109365	0.0719798
chr12	62336290	62336390	12913827	0	+	0.41	(0.39,0.42]	chr12	1006428	12	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	63	2	2.49974	2.522495	2.54525	6.03386e-4	2.11447e-4	0.00814312	0.00328766
chr1	241511966	241512054	1577519	0	-	0.409091	(0.39,0.42]	chr1	157538	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1:ENST00000497042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	52	2	2.43922	2.5224	2.60558	9.01224e-4	4.23634e-4	0.0102618	0.00613675
chr6	27831527	27831560	7649618	0	-	0.545455	(0.53,0.59]	chr6	582813	1	UTR5	UTR5:EXON_MRNA	H4C12	ENSG00000273542.2	ENST00000611927.2	protein_coding	protein_coding	protein_coding	protein_coding	18	129	2	2.27912	2.521995	2.76487	7.86143e-4	7.04472e-6	0.00929193	2.27146e-4
chr14	77469149	77469249	14415670	0	+	0.55	(0.53,0.59]	chr14	1126884	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AHSA1	ENSG00000100591.8	ENST00000555133.5:ENST00000216479.8:ENST00000555457.5:ENST00000555729.3:ENST00000555473.1:ENST00000556369.1:ENST00000557476.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	38	2	2.515	2.52178	2.52856	0.0292633	0.00107225	0.129773	0.0118238
chr3	186900467	186900557	3958575	0	+	0.444444	(0.42,0.455]	chr3	333918	4	EXON_PSEUDO	EXON_PSEUDO	RPS20P14	ENSG00000223803.1	ENST00000412545.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	38	2	2.11785	2.52149	2.92513	0.0154862	3.39829e-4	0.0836691	0.00479167
chr9	111934380	111934479	10420392	0	+	0.444444	(0.42,0.455]	chr9	784485	15	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.11785	2.52149	2.92513	0.0154862	3.39829e-4	0.0836691	0.00479167
chr19	53068374	53068474	17624125	0	-	0.48	(0.455,0.49]	chr19	1487287	3	CDS	CDS:EXON_MRNA	ZNF160	ENSG00000170949.18	ENST00000599056.5:ENST00000418871.5:ENST00000429604.5:ENST00000683776.1:ENST00000601421.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.35214	2.5213349999999997	2.69053	0.0455621	0.0182983	0.168044	0.0925808
chr3	44925794	44925894	4149288	0	-	0.48	(0.455,0.49]	chr3	346689	56	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC3	ENSG00000163812.15	ENST00000339420.7:ENST00000424952.7:ENST00000443879.2:ENST00000296127.7	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.35214	2.5213349999999997	2.69053	0.0455621	0.0182983	0.168044	0.0925808
chr18	32113802	32113860	16810717	0	+	0.37931	(0.36,0.39]	chr18	1386598	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000585103.5:ENST00000578914.1:ENST00000583733.1:ENST00000257190.9:ENST00000580499.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	20	2	1.85874	2.52111	3.18348	0.0415243	0.00310315	0.164804	0.0263402
chrX	109642132	109642232	19168159	0	-	0.37	(0.36,0.39]	chrX	1630379	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL4	ENSG00000068366.21	ENST00000505075.1:ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	20	2	1.85874	2.52111	3.18348	0.0415243	0.00310315	0.164804	0.0263402
chr19	38729617	38729710	17323765	0	+	0.537634	(0.53,0.59]	chr19	1434384	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000589528.1:ENST00000497637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.37399	2.5210600000000003	2.66813	0.0126178	5.09538e-4	0.0717599	0.00662599
chr3	129265629	129265710	3730502	0	+	0.567901	(0.53,0.59]	chr3	318929	2	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000504547.1:ENST00000513410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	2.37399	2.5210600000000003	2.66813	0.0126178	5.09538e-4	0.0717599	0.00662599
chr1	19128210	19128264	876179	0	-	0.481481	(0.455,0.49]	chr1	90099	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr1	226363098	226363160	1533034	0	-	0.467742	(0.455,0.49]	chr1	153423	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000676481.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000463968.5:ENST00000468608.1:ENST00000677374.1:ENST00000677815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr15	34490276	34490374	15205577	0	-	0.489796	(0.455,0.49]	chr15	1197044	14	EXON_PSEUDO	EXON_PSEUDO	HNRNPLP2	ENSG00000259917.1	ENST00000568980.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr16	1961221	1961291	15489746	0	+	0.485714	(0.455,0.49]	chr16	1226444	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFB10	ENSG00000140990.15	ENST00000268668.11:ENST00000543683.6:ENST00000565031.1:ENST00000569148.1:ENST00000570172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr16	84758733	84758807	15790821	0	+	0.472973	(0.455,0.49]	chr16	1256679	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr17	40291057	40291151	16224420	0	+	0.489362	(0.455,0.49]	chr17	1312118	1	CDS	CDS:EXON_MRNA	CDC6	ENSG00000094804.12	ENST00000209728.9:ENST00000580824.5:ENST00000577249.1:ENST00000649662.1:ENST00000473555.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr2	190930436	190930496	2280029	0	+	0.466667	(0.455,0.49]	chr2	206943	1	CDS	CDS:UTR5:EXON_MRNA	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000409626.5:ENST00000457316.5:ENST00000409428.5:ENST00000409215.5:ENST00000412247.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr22	21920811	21920910	18443458	0	-	0.484848	(0.455,0.49]	chr22	1572559	15	UTR3	UTR3:EXON_MRNA	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr5	138417482	138417546	6244460	0	+	0.46875	(0.455,0.49]	chr5	486541	1	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr9	37086671	37086770	10252796	0	+	0.464646	(0.455,0.49]	chr9	771576	18	EXON_LNCRNA	EXON_LNCRNA	EBLN3P	ENSG00000281649.2	ENST00000664037.1:ENST00000660341.1:ENST00000662098.1:ENST00000666604.1:ENST00000653711.1:ENST00000625445.1:ENST00000664382.1:ENST00000656197.1:ENST00000658888.1:ENST00000653587.1:ENST00000664088.1:ENST00000665375.1:ENST00000631093.1:ENST00000657640.1:ENST00000629870.2:ENST00000625218.1:ENST00000627197.1:ENST00000654889.1:ENST00000656730.1:ENST00000628924.1	lncRNA	lncRNA	lncRNA	lncRNA	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chrX	18256938	18257030	18974806	0	-	0.48913	(0.455,0.49]	chrX	1615661	2	CDS	CDS:EXON_MRNA	SCML2	ENSG00000102098.19	ENST00000251900.9:ENST00000665583.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.50904	2.52095	2.53286	0.0310515	0.0282409	0.131262	0.124386
chr2	171952909	171953001	2208410	0	+	0.380435	(0.36,0.39]	chr2	202136	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	1.85489	2.520655	3.18642	0.0350721	0.00359152	0.141601	0.0302391
chr16	69694039	69694139	15725295	0	+	0.44	(0.42,0.455]	chr16	1252127	24	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	34	2	2.04415	2.5204050000000002	2.99666	0.0101476	0.00104775	0.0627153	0.0123035
chr17	42200653	42200752	16546625	0	-	0.414141	(0.39,0.42]	chr17	1357142	16	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	14	54	2	1.44611	2.520375	3.59464	0.0165234	3.6617e-5	0.087611	8.82767e-4
chr1	39572392	39572466	953051	0	-	0.364865	(0.36,0.39]	chr1	100588	1	CDS	CDS:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000474378.1:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	53	2	2.46777	2.520275	2.57278	5.85449e-4	4.3886e-4	0.00793746	0.00591388
chr5	134927247	134927345	6846866	0	-	0.438776	(0.42,0.455]	chr5	523926	7	EXON_PSEUDO	EXON_PSEUDO	MTND4P12	ENSG00000247627.2	ENST00000498999.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	47	2	1.47189	2.5202	3.56851	0.0264934	3.9883e-5	0.117676	9.51945e-4
chr2	74892391	74892488	1893443	0	+	0.371134	(0.36,0.39]	chr2	179646	16	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	9	47	2	2.00093	2.5201849999999997	3.03944	0.00996106	5.52787e-5	0.0621728	0.00112179
chr20	21166205	21166302	17925235	0	-	0.43299	(0.42,0.455]	chr20	1517257	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	KIZ-AS1:RPS15AP1	ENSG00000232712.6:ENSG00000214535.3	ENST00000616177.4:ENST00000457423.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	19	115	2	2.14108	2.520105	2.89913	0.00130937	2.08122e-6	0.0143025	7.38737e-5
chr1	154156665	154156762	1302305	0	-	0.298969	(0.29,0.33]	chr1	131065	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	2.36742	2.520095	2.67277	0.0255386	0.0147368	0.117089	0.0801529
chr13	41128443	41128540	13989305	0	-	0.329897	(0.29,0.33]	chr13	1097167	10	UTR3	UTR3:EXON_MRNA	KBTBD6	ENSG00000165572.8	ENST00000379485.2	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.36742	2.520095	2.67277	0.0255386	0.0147368	0.117089	0.0801529
chr5	118974307	118974399	6174263	0	+	0.315217	(0.29,0.33]	chr5	481546	3	PRIMIRNA	PRIMIRNA	MIR1244-2	ENSG00000283498.1	ENST00000636449.1	miRNA	primary_miRNA	miRNA	primary_miRNA	3	15	2	2.36742	2.520095	2.67277	0.0255386	0.0147368	0.117089	0.0801529
chrX	71299976	71300043	18730895	0	+	0.522388	(0.49,0.53]	chrX	1598444	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000450092.6:ENST00000454976.2:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	84	2	2.49902	2.52005	2.54108	5.09746e-4	9.11652e-5	0.00713668	0.00168187
chr19	46716270	46716370	17595141	0	-	0.78	(0.59,1]	chr19	1481274	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRKD2	ENSG00000105287.13	ENST00000601806.5:ENST00000291281.9:ENST00000433867.5:ENST00000595515.5:ENST00000598633.1:ENST00000593363.1	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	2.11894	2.519955	2.92097	0.0293157	0.0102634	0.128478	0.0628742
chr8	144096415	144096494	9650298	0	+	0.594937	(0.59,1]	chr8	731513	2	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000528618.1:ENST00000525122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	112	2	1.8325	2.5199100000000003	3.20732	0.00890209	1.12583e-4	0.0567495	0.00199971
chr6	80042202	80042283	7258744	0	+	0.333333	(0.33,0.36]	chr6	559313	1	UTR3	UTR3:EXON_MRNA	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.00765	2.519725	3.0318	0.0287001	1.96415e-4	0.128757	0.00311664
chr9	130887177	130887276	10494303	0	+	0.474747	(0.455,0.49]	chr9	792936	16	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	21	115	2	2.3616	2.519705	2.67781	1.24616e-4	1.7222e-5	0.00236583	4.33531e-4
chr6	133984582	133984682	7412294	0	+	0.37	(0.36,0.39]	chr6	568104	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000367871.5:ENST00000237264.9:ENST00000477527.1:ENST00000481694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	2.42114	2.5196199999999997	2.6181	0.00564641	0.00176908	0.0422191	0.0172426
chr1	165655504	165655594	515906	0	+	0.211111	[0,0.29]	chr1	55493	1	UTR3	UTR3:EXON_MRNA:INTRON	MGST3	ENSG00000143198.13	ENST00000367888.8:ENST00000367889.8:ENST00000495447.5:ENST00000367885.5:ENST00000367884.6:ENST00000367883.3:ENST00000627653.1:ENST00000494074.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	2.3458	2.5194400000000003	2.69308	0.0116272	0.00137675	0.0685835	0.0142677
chr14	63375810	63375909	14666188	0	-	0.333333	(0.33,0.36]	chr14	1148392	46	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.27335	2.519425	2.7655	0.0175892	0.00837768	0.0918323	0.0541213
chr20	49117186	49117248	17999430	0	-	0.33871	(0.33,0.36]	chr20	1525576	2	CDS	CDS:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.27335	2.519425	2.7655	0.0175892	0.00837768	0.0918323	0.0541213
chr19	45687459	45687552	17590094	0	-	0.462366	(0.455,0.49]	chr19	1480425	1	UTR3	UTR3:EXON_MRNA	SNRPD2	ENSG00000125743.11	ENST00000342669.8:ENST00000585392.2:ENST00000587367.5:ENST00000588301.5:ENST00000391932.7:ENST00000588599.5:ENST00000590212.1	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	1.92777	2.518895	3.11002	0.0286531	1.15314e-4	0.128685	0.0020426
chrX	71291891	71291972	18730799	0	+	0.382716	(0.36,0.39]	chrX	1598408	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	80	2	2.50807	2.518795	2.52952	1.68894e-4	7.39227e-5	0.00297945	0.00141713
chr12	51049012	51049079	12876042	0	+	0.41791	(0.39,0.42]	chr12	1000555	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000551261.5:ENST00000546992.5:ENST00000548390.5:ENST00000548401.1:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	2.34349	2.518615	2.69374	0.0169272	0.00386013	0.0890655	0.0310764
chrX	155236297	155236367	18920341	0	+	0.4	(0.39,0.42]	chrX	1612527	2	CDS	CDS:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	2.34349	2.518615	2.69374	0.0169272	0.00386013	0.0890655	0.0310764
chr5	111192225	111192315	6760663	0	-	0.444444	(0.42,0.455]	chr5	519120	1	EXON_PSEUDO	EXON_PSEUDO	RPS3AP21	ENSG00000214784.4	ENST00000461022.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	26	2	1.7601	2.518585	3.27707	0.0312663	0.00207325	0.132093	0.0194849
chr1	52826155	52826253	196103	0	+	0.397959	(0.39,0.42]	chr1	24993	47	UTR3	UTR3:EXON_MRNA	ZYG11B	ENSG00000162378.13	ENST00000294353.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.98676	2.51853	3.0503	0.0439902	0.00570576	0.163596	0.0424438
chr18	32129187	32129285	16810878	0	+	0.408163	(0.39,0.42]	chr18	1386626	1	UTR3	UTR3:EXON_MRNA	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000257190.9:ENST00000577999.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.98676	2.51853	3.0503	0.0439902	0.00570576	0.163596	0.0424438
chr6	57152285	57152351	7191430	0	+	0.393939	(0.39,0.42]	chr6	556091	2	CDS	CDS:EXON_MRNA:INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000491832.6:ENST00000504603.1:ENST00000508548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	1.98676	2.51853	3.0503	0.0439902	0.00570576	0.163596	0.0424438
chr10	110604399	110604496	11250771	0	+	0.247423	[0,0.29]	chr10	857205	2	UTR3	UTR3:EXON_MRNA	SMC3	ENSG00000108055.10	ENST00000361804.5	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.42058	2.5184300000000004	2.61628	0.0101434	0.00490744	0.0626311	0.0366648
chr11	59637699	59637798	12401032	0	-	0.282828	[0,0.29]	chr11	959467	11	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.42058	2.5184300000000004	2.61628	0.0101434	0.00490744	0.0626311	0.0366648
chr3	140978921	140979020	3783447	0	+	0.272727	[0,0.29]	chr3	322887	26	UTR3	UTR3:EXON_MRNA	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	2.42058	2.5184300000000004	2.61628	0.0101434	0.00490744	0.0626311	0.0366648
chr1	63453917	63453974	1070785	0	-	0.333333	(0.33,0.36]	chr1	109469	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ITGB3BP	ENSG00000142856.17	ENST00000271002.15:ENST00000489099.5:ENST00000371092.7:ENST00000461681.5:ENST00000463803.5:ENST00000476508.5:ENST00000460394.5:ENST00000462285.5:ENST00000489863.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr1	87092530	87092599	341287	0	+	0.333333	(0.33,0.36]	chr1	33612	1	CDS	CDS:EXON_MRNA	HS2ST1:RP5-1052I5.2	ENSG00000153936.17:ENSG00000267561.2	ENST00000370550.10:ENST00000370551.8:ENST00000591456.1:ENST00000370548.3	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr1	231561129	231561192	752977	0	+	0.349206	(0.33,0.36]	chr1	76612	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TSNAX:TSNAX-DISC1	ENSG00000116918.15:ENSG00000270106.6	ENST00000413309.3:ENST00000602634.5:ENST00000602956.5:ENST00000602962.5:ENST00000602885.5:ENST00000602567.1:ENST00000644515.1:ENST00000646525.1:ENST00000647072.1:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr11	90207600	90207699	12542558	0	-	0.343434	(0.33,0.36]	chr11	973149	9	UTR5	UTR5:EXON_MRNA:INTRON	CHORDC1	ENSG00000110172.12	ENST00000320585.11:ENST00000529987.5:ENST00000457199.6:ENST00000533724.5:ENST00000529726.1:ENST00000525317.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr12	122615469	122615526	13124675	0	+	0.350877	(0.33,0.36]	chr12	1025267	1	CDS	CDS:UTR5:EXON_MRNA	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12:ENST00000436959.7:ENST00000546125.1:ENST00000539013.5:ENST00000541427.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr6	49619362	49619462	7729747	0	-	0.36	(0.33,0.36]	chr6	592981	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr7	24688610	24688710	8181809	0	+	0.34	(0.33,0.36]	chr7	624342	11	UTR3	UTR3:EXON_MRNA	MPP6	ENSG00000105926.16	ENST00000222644.10:ENST00000396475.6	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.51797	2.51842	2.51887	0.0358636	0.0303594	0.147298	0.130016
chr6	7882377	7882473	7587979	0	-	0.458333	(0.455,0.49]	chr6	578854	10	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	52	2	1.90433	2.5183	3.13227	0.0185466	2.90346e-5	0.0932453	6.60686e-4
chr16	154196	154271	15480576	0	+	0.866667	(0.59,1]	chr16	1224150	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	58	2	1.88006	2.51819	3.15632	0.0554008	6.43048e-4	0.191173	0.00850474
chr7	72947022	72947120	8330247	0	+	0.5	(0.49,0.53]	chr7	634065	9	UTR3	UTR3:EXON_MRNA:INTRON	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	10	62	2	1.83331	2.51817	3.20303	0.0103144	1.77694e-5	0.063642	4.87271e-4
chr12	56643736	56643836	13352169	0	-	0.34	(0.33,0.36]	chr12	1051760	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	41	2	2.4164	2.51809	2.61978	0.011989	9.20108e-5	0.0700473	0.0018428
chr9	136862200	136862283	10892339	0	-	0.614458	(0.59,1]	chr9	827987	2	UTR3	UTR3:EXON_MRNA	EDF1	ENSG00000107223.13	ENST00000224073.6:ENST00000371649.5	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.49936	2.51792	3.53648	0.0358913	0.00107706	0.144634	0.0124943
chr12	24817707	24817807	13255733	0	-	0.33	(0.29,0.33]	chr12	1038842	78	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000543099.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	47	2	2.19859	2.517875	2.83716	0.00139265	1.69403e-4	0.0143949	0.00298622
chr11	47466031	47466131	12386768	0	-	0.37	(0.36,0.39]	chr11	956932	2	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	9	47	2	2.2842	2.517835	2.75147	0.0049656	1.45783e-4	0.0381176	0.00244642
chr5	150094301	150094394	6293945	0	+	0.462366	(0.455,0.49]	chr5	491108	1	EXON_PSEUDO	EXON_PSEUDO	RPL7P1	ENSG00000214485.6	ENST00000468161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	63	2	1.80094	2.51778	3.23462	0.0265942	4.87179e-6	0.120205	1.51951e-4
chr1	241632509	241632608	1578038	0	-	0.444444	(0.42,0.455]	chr1	157611	38	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	101	2	2.45603	2.51767	2.57931	3.00873e-4	2.59583e-5	0.00472028	6.00795e-4
chr9	110244777	110244843	10792298	0	-	0.393939	(0.39,0.42]	chr9	817297	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9:ENST00000487892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	130	2	2.47985	2.51756	2.55527	1.18973e-4	8.87109e-6	0.00226117	2.49574e-4
chr17	52127479	52127579	16593785	0	-	0.38	(0.36,0.39]	chr17	1363724	547	INTRON	INTRON	CA10	ENSG00000154975.14	ENST00000442502.6:ENST00000570565.5:ENST00000451037.7:ENST00000571371.5:ENST00000285273.8:ENST00000575181.1:ENST00000573294.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	119	772	2	1.3372	2.5175549999999998	3.69791	0.00488981	1.32439e-12	0.0376368	2.88964e-10
chr6	31538762	31538850	7661165	0	-	0.454545	(0.42,0.455]	chr6	584707	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	1.58962	2.5174950000000003	3.44537	0.0352	8.6897e-5	0.142054	0.00177086
chr19	15244230	15244322	17484982	0	-	0.684783	(0.59,1]	chr19	1465318	1	CDS	CDS:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	2.4986	2.517065	2.53553	0.00349906	0.00134354	0.0296494	0.014003
chr2	113940030	113940102	2006941	0	+	0.486111	(0.455,0.49]	chr2	190776	2	CDS	CDS:UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	41	2	1.56984	2.516865	3.46389	0.0151327	9.14164e-4	0.0821639	0.0110519
chr8	42405557	42405652	9305664	0	+	0.463158	(0.455,0.49]	chr8	712517	2	UTR3	UTR3:EXON_MRNA	VDAC3	ENSG00000078668.14	ENST00000522572.5:ENST00000022615.9	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.29155	2.5168299999999997	2.74211	0.00354718	0.00330545	0.0291792	0.028478
chrX	154359818	154359905	19278090	0	-	0.666667	(0.59,1]	chrX	1638312	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.11074	2.51677	2.9228	0.0305	0.00981698	0.130204	0.0612992
chr19	58544757	58544857	17413284	0	+	0.8	(0.59,1]	chr19	1451171	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	12	111	2	1.33738	2.51674	3.6961	0.0347374	3.68566e-5	0.144185	8.01958e-4
chr16	70262368	70262468	15996982	0	-	0.55	(0.53,0.59]	chr16	1284632	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	47	2	2.01284	2.51669	3.02054	0.00577011	0.00319369	0.0426551	0.0267777
chr12	57821415	57821515	13358213	0	-	0.47	(0.455,0.49]	chr12	1053218	16	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.18128	2.5164999999999997	2.85172	0.0111696	0.010864	0.0665375	0.0643837
chr19	1242455	1242532	17192021	0	+	0.675325	(0.59,1]	chr19	1411826	1	CDS	CDS:EXON_MRNA	ATP5F1D	ENSG00000099624.8	ENST00000395633.5:ENST00000215375.7:ENST00000592624.1:ENST00000590265.5:ENST00000588538.5:ENST00000591660.5:ENST00000591249.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	2.25872	2.51645	2.77418	0.0193473	0.0160729	0.0969537	0.0860154
chr11	85983919	85983973	12525982	0	-	0.518519	(0.49,0.53]	chr11	972198	2	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.65324	2.516295	3.37935	0.0407792	4.98514e-6	0.163285	1.54467e-4
chrX	71060425	71060523	19106534	0	-	0.44898	(0.42,0.455]	chrX	1625280	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNX12	ENSG00000147164.12	ENST00000622259.4:ENST00000483560.1:ENST00000374274.8:ENST00000622277.4:ENST00000490561.6:ENST00000465030.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	1.72071	2.51616	3.31161	0.0499984	0.00186138	0.179758	0.018635
chr1	114707055	114707154	1239476	0	-	0.323232	(0.29,0.33]	chr1	121309	27	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	13	54	2	2.41937	2.5161249999999997	2.61288	0.00138819	1.66882e-4	0.0149724	0.00271977
chr2	47800581	47800680	1788207	0	+	0.353535	(0.33,0.36]	chr2	172666	17	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	2.00765	2.515795	3.02394	0.0287001	8.89743e-4	0.128757	0.0102057
chr2	157295730	157295798	2152484	0	+	0.352941	(0.33,0.36]	chr2	198591	2	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.00765	2.515795	3.02394	0.0287001	8.89743e-4	0.128757	0.0102057
chr1	19143979	19144035	876348	0	-	0.5	(0.49,0.53]	chr1	90137	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.99044	2.515755	3.04107	0.0435903	0.00533879	0.170594	0.0392268
chr11	126265736	126265823	12645167	0	-	0.528736	(0.49,0.53]	chr11	981841	1	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000527817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	1.99044	2.515755	3.04107	0.0435903	0.00533879	0.170594	0.0392268
chr5	72209270	72209368	6027890	0	+	0.5	(0.49,0.53]	chr5	472574	42	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.99044	2.515755	3.04107	0.0435903	0.00533879	0.170594	0.0392268
chr5	138391588	138391684	6244193	0	+	0.59375	(0.59,1]	chr5	486509	7	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.72824	2.51547	3.3027	0.0471232	2.94605e-4	0.179872	0.00432147
chr11	77666817	77666916	12473803	0	-	0.373737	(0.36,0.39]	chr11	970340	70	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000480887.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.19	2.5154449999999997	2.84089	0.0128123	0.0111937	0.0719798	0.0665375
chr17	8206841	8206934	16432140	0	-	0.516129	(0.49,0.53]	chr17	1340343	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5:ENST00000578549.5:ENST00000580998.5:ENST00000577833.5:ENST00000581511.5:ENST00000580390.5:ENST00000584561.1:ENST00000582368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	2.01464	2.515405	3.01617	0.0205094	8.62231e-4	0.0991175	0.0100487
chr8	17966327	17966400	9214800	0	+	0.465753	(0.455,0.49]	chr8	704081	1	CDS	CDS:EXON_MRNA	PCM1	ENSG00000078674.18	ENST00000325083.12:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.27492	2.515395	2.75587	0.0193827	0.00293507	0.0943643	0.025146
chr6	159779990	159780087	8049067	0	-	0.43299	(0.42,0.455]	chr6	615257	2	CDS	CDS:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000546204.1:ENST00000539756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	60	2	1.60466	2.5153499999999998	3.42604	0.0141514	1.46189e-5	0.0774533	3.76794e-4
chrX	124101675	124101773	18852596	0	+	0.326531	(0.29,0.33]	chrX	1606330	12	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	67	2	2.48901	2.515145	2.54128	1.98942e-4	1.0358e-4	0.00339074	0.0018571
chr12	123596729	123596826	13127188	0	+	0.350515	(0.33,0.36]	chr12	1025792	1	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000543425.1:ENST00000262225.8:ENST00000509052.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	80	2	2.29014	2.5150300000000003	2.73992	0.00117614	1.04979e-5	0.0132131	2.88092e-4
chr1	32680347	32680436	130418	0	+	0.303371	(0.29,0.33]	chr1	16120	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	40	167	2	1.86628	2.514945	3.16361	8.69543e-4	2.32888e-8	0.0106775	1.60638e-6
chr21	33577300	33577390	18101458	0	+	0.277778	[0,0.29]	chr21	1534606	9	UTR3	UTR3:EXON_MRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000478183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	17	2	2.20534	2.514885	2.82443	0.0180803	0.0117033	0.0920398	0.0685676
chr6	7287712	7287812	7586869	0	-	0.24	[0,0.29]	chr6	578692	67	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	2.20534	2.514885	2.82443	0.0180803	0.0117033	0.0920398	0.0685676
chr3	196937578	196937648	4666641	0	-	0.514286	(0.49,0.53]	chr3	386086	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NCBP2	ENSG00000114503.11	ENST00000467803.1:ENST00000321256.10:ENST00000447325.5:ENST00000463783.1:ENST00000428425.1:ENST00000427641.2:ENST00000452404.6:ENST00000468923.5:ENST00000422610.5:ENST00000411704.1:ENST00000479647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	1.69633	2.514785	3.33324	0.0531914	0.00162947	0.184818	0.0169972
chr1	205790849	205790946	1462472	0	-	0.453608	(0.42,0.455]	chr1	147533	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4:ENST00000484228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr11	134245689	134245789	12222278	0	+	0.45	(0.42,0.455]	chr11	942599	2	UTR3	UTR3:EXON_MRNA	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000531741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr17	48863048	48863147	16255729	0	+	0.424242	(0.42,0.455]	chr17	1317495	1	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000507306.1:ENST00000509784.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr2	171728716	171728783	2207878	0	+	0.432836	(0.42,0.455]	chr2	202087	1	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr4	40786109	40786194	4804509	0	+	0.447059	(0.42,0.455]	chr4	396525	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	NSUN7:ARL4AP2	ENSG00000179299.17:ENSG00000248780.1	ENST00000316607.5:ENST00000381782.7:ENST00000423784.5:ENST00000507378.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr5	122799753	122799816	6187628	0	+	0.444444	(0.42,0.455]	chr5	482498	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SNX2	ENSG00000205302.7	ENST00000512394.5:ENST00000379516.7:ENST00000505934.5:ENST00000505854.5:ENST00000514949.1:ENST00000510372.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr6	42867684	42867781	7153755	0	+	0.443299	(0.42,0.455]	chr6	552174	24	UTR3	UTR3:EXON_MRNA	BICRAL	ENSG00000112624.12	ENST00000614467.4:ENST00000314073.9:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chrX	103253625	103253725	19154917	0	-	0.43	(0.42,0.455]	chrX	1629257	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TCEAL8	ENSG00000180964.17	ENST00000360000.8:ENST00000372685.8:ENST00000451678.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.36247	2.51472	2.66697	0.0462889	0.0190326	0.176878	0.0958835
chr1	17407438	17407535	874004	0	-	0.505155	(0.49,0.53]	chr1	89600	8	UTR3	UTR3:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	9	55	2	2.40248	2.51471	2.62694	0.00107652	6.60942e-4	0.0118238	0.00866622
chr19	34366344	34366435	17300205	0	+	0.549451	(0.53,0.59]	chr19	1429824	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000587521.7:ENST00000587384.6:ENST00000592277.5:ENST00000642240.1:ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000646312.1:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	72	2	2.18736	2.514685	2.84201	0.00311033	8.06276e-5	0.0263966	0.00167444
chr3	156543103	156543202	4538663	0	-	0.50505	(0.49,0.53]	chr3	376076	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSR3	ENSG00000114850.7	ENST00000265044.7:ENST00000467789.5:ENST00000476217.5:ENST00000498205.5:ENST00000478842.5:ENST00000464138.1:ENST00000463503.5:ENST00000496050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	87	2	2.41156	2.514665	2.61777	0.00172617	6.69057e-5	0.0178146	0.00130396
chr3	49359818	49359916	4174069	0	-	0.397959	(0.39,0.42]	chr3	350894	8	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	14	71	2	2.25378	2.514585	2.77539	7.48045e-4	6.04118e-5	0.00934936	0.00120998
chr4	1727903	1728001	4680960	0	+	0.520408	(0.49,0.53]	chr4	387955	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TACC3	ENSG00000013810.21	ENST00000458173.4:ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000467746.6:ENST00000493975.5:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.03065	2.51457	2.99849	0.0189484	0.00630123	0.0958835	0.0445415
chr22	21763343	21763442	18442384	0	-	0.494949	(0.49,0.53]	chr22	1572508	38	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	18	106	2	1.92316	2.514295	3.10543	0.00186446	2.76113e-6	0.0186636	9.46832e-5
chr21	5232752	5232838	18154091	0	-	0.581395	(0.53,0.59]	chr21	1541236	2	EXON_LNCRNA	EXON_LNCRNA	RP11-717F1.1	ENSG00000279669.1	ENST00000623753.1	lncRNA	lncRNA	lncRNA	lncRNA	7	54	2	1.77634	2.514255	3.25217	0.025972	4.79919e-5	0.117079	0.00109351
chr19	38845649	38845735	17561169	0	-	0.44186	(0.42,0.455]	chr19	1475099	1	CDS	CDS:EXON_MRNA	HNRNPL	ENSG00000104824.18	ENST00000221419.10:ENST00000647557.1:ENST00000388749.7:ENST00000601449.5:ENST00000600873.5:ENST00000598985.5:ENST00000601047.5:ENST00000600233.5:ENST00000601813.1:ENST00000600741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	76	2	1.87857	2.514185	3.1498	0.00949283	3.94534e-6	0.0596168	1.27509e-4
chr3	184323161	184323241	3949218	0	+	0.725	(0.59,1]	chr3	332426	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	80	2	2.09078	2.5138800000000003	2.93698	0.00582429	0.0015925	0.0427941	0.0159023
chr6	32162850	32162950	7118528	0	+	0.57	(0.53,0.59]	chr6	546944	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	51	2	2.08502	2.513665	2.94231	0.00828532	3.05722e-4	0.0543012	0.00442973
chr10	72275017	72275088	11111174	0	+	0.619718	(0.59,1]	chr10	845357	3	CDS	CDS:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	96	2	1.97731	2.51362	3.04993	0.00878719	2.84421e-4	0.0562439	0.00455408
chr1	15929984	15930084	71836	0	+	0.53	(0.49,0.53]	chr1	8104	20	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.3044	2.51346	2.72252	0.0509448	0.0161474	0.181793	0.0860154
chr16	69136680	69136780	15721539	0	+	0.53	(0.49,0.53]	chr16	1251789	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UTP4	ENSG00000141076.18	ENST00000563299.5:ENST00000562237.5:ENST00000567460.5:ENST00000566227.5:ENST00000314423.12:ENST00000352319.8:ENST00000563094.5:ENST00000569800.5:ENST00000567235.6:ENST00000568448.1:ENST00000567015.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.3044	2.51346	2.72252	0.0509448	0.0161474	0.181793	0.0860154
chr17	63830424	63830501	16319005	0	+	0.519481	(0.49,0.53]	chr17	1323942	3	CDS	CDS:UTR3:EXON_MRNA	PSMC5	ENSG00000087191.13	ENST00000579708.5:ENST00000310144.11:ENST00000581842.5:ENST00000582130.5:ENST00000584320.5:ENST00000579147.5:ENST00000580864.5:ENST00000585123.5:ENST00000581764.1:ENST00000584536.5:ENST00000585242.5:ENST00000578570.5:ENST00000375812.8:ENST00000581882.5:ENST00000579031.5:ENST00000584880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.3044	2.51346	2.72252	0.0509448	0.0161474	0.181793	0.0860154
chr22	35403206	35403269	18359404	0	+	0.52381	(0.49,0.53]	chr22	1560982	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000451351.5:ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000416905.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	16	2	2.3044	2.51346	2.72252	0.0509448	0.0161474	0.181793	0.0860154
chr6	161024913	161025012	7532228	0	+	0.515152	(0.49,0.53]	chr6	575318	23	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6:ENST00000448119.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	16	2	2.3044	2.51346	2.72252	0.0509448	0.0161474	0.181793	0.0860154
chr16	28836009	28836087	15620396	0	+	0.717949	(0.59,1]	chr16	1238478	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000569318.1:ENST00000566007.5:ENST00000564162.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	8	97	2	1.81952	2.51342	3.20732	0.0162925	1.12583e-4	0.0867467	0.00199971
chr18	3272898	3272998	16729863	0	+	0.49	(0.455,0.49]	chr18	1380123	1	CDS_START	CDS_START:CDS:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	2.48891	2.513345	2.53778	0.00105636	7.24922e-4	0.0117237	0.00911324
chr7	101210330	101210387	8953669	0	-	0.614035	(0.59,1]	chr7	684672	1	CDS	CDS:UTR3:EXON_MRNA	PLOD3	ENSG00000106397.12	ENST00000454310.5:ENST00000223127.8:ENST00000487563.1:ENST00000460132.5:ENST00000440925.1:ENST00000466881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	39	2	1.96394	2.51326	3.06258	0.0453144	0.00616167	0.174798	0.0438642
chr11	65348849	65348931	11984109	0	+	0.560976	(0.53,0.59]	chr11	920293	1	CDS	CDS:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	33	2	2.01641	2.5131550000000002	3.0099	0.0108917	0.00600486	0.0645168	0.042887
chr1	1322391	1322484	827167	0	-	0.494624	(0.49,0.53]	chr1	82265	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS11	ENSG00000127054.21	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000618806.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000429572.5:ENST00000498173.2:ENST00000496353.1:ENST00000493534.6:ENST00000534345.5:ENST00000532952.5:ENST00000531019.5:ENST00000490853.5:ENST00000498476.6:ENST00000470679.3:ENST00000525285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr11	57805909	57805972	11953122	0	+	0.52381	(0.49,0.53]	chr11	914843	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr15	57192225	57192293	14949171	0	+	0.5	(0.49,0.53]	chr15	1174846	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561346.5:ENST00000559216.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr2	49229702	49229802	2642435	0	-	0.52	(0.49,0.53]	chr2	237477	107	INTRON	INTRON	RP11-152D8.1	ENSG00000282998.1	ENST00000635306.1	lncRNA	lncRNA	lncRNA	lncRNA	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr2	161371246	161371322	2164990	0	+	0.5	(0.49,0.53]	chr2	199380	2	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr3	38486007	38486106	3421772	0	+	0.50505	(0.49,0.53]	chr3	297512	28	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr5	98856479	98856561	6725380	0	-	0.5	(0.49,0.53]	chr5	517720	1	CDS	CDS:UTR3:EXON_MRNA	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000512392.5:ENST00000512844.5:ENST00000513064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr8	20216412	20216495	9220056	0	+	0.506024	(0.49,0.53]	chr8	704719	1	CDS	CDS:EXON_MRNA	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.38097	2.513125	2.64528	0.0425419	0.0202736	0.167547	0.0984041
chr1	11908080	11908151	45004	0	+	0.464789	(0.455,0.49]	chr1	5686	3	EXON_LNCRNA	EXON_LNCRNA	RP5-934G17.7	ENSG00000285646.2	ENST00000661075.1:ENST00000649268.2:ENST00000650448.1:ENST00000666735.1	lncRNA	lncRNA	lncRNA	lncRNA	11	69	2	1.99447	2.51307	3.03167	0.012436	4.77203e-6	0.0712518	1.64158e-4
chrX	71242254	71242339	19106960	0	-	0.494118	(0.49,0.53]	chrX	1625393	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZMYM3	ENSG00000147130.14	ENST00000373998.5:ENST00000314425.9:ENST00000373988.5:ENST00000373984.7:ENST00000489332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	1.90685	2.512885	3.11892	0.0534351	0.00398244	0.184995	0.0322851
chr10	68968975	68969048	11093258	0	+	0.383562	(0.36,0.39]	chr10	843252	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.25794	2.51286	2.76778	0.00429221	0.00365703	0.0333617	0.0307238
chr1	47218739	47218837	985537	0	-	0.510204	(0.49,0.53]	chr1	104046	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3:ENST00000459729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	2.42431	2.512735	2.60116	0.0056515	0.0018555	0.0422191	0.0178545
chr4	53428026	53428091	4832129	0	+	0.415385	(0.39,0.42]	chr4	398381	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FIP1L1:RP11-231C18.3	ENSG00000145216.16:ENSG00000282278.1	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000507166.5:ENST00000513975.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	40	2	1.50406	2.5127249999999997	3.52139	0.0413581	5.10101e-5	0.164391	0.00104581
chr19	40749803	40749896	17567421	0	-	0.526882	(0.49,0.53]	chr19	1476617	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C19orf54	ENSG00000188493.15	ENST00000469741.6:ENST00000470681.5:ENST00000378313.7:ENST00000598485.6:ENST00000596809.5:ENST00000597507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.30264	2.51258	2.72252	0.0165402	0.0161474	0.087611	0.0860154
chr4	70958956	70959040	4878679	0	+	0.5	(0.49,0.53]	chr4	401882	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	2.30264	2.51258	2.72252	0.0165402	0.0161474	0.087611	0.0860154
chr10	5813213	5813258	11352937	0	-	0.6	(0.59,1]	chr10	865791	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000380181.7:ENST00000456041.5:ENST00000418688.5:ENST00000608581.5:ENST00000380127.5:ENST00000609712.1	protein_coding	protein_coding	protein_coding	protein_coding	3	40	2	2.50322	2.51236	2.5215	0.032241	0.00863444	0.135671	0.0556009
chr12	54400920	54400995	13343770	0	-	0.6	(0.59,1]	chr12	1049765	2	CDS	CDS:EXON_MRNA	ITGA5	ENSG00000161638.11	ENST00000293379.9:ENST00000552564.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	40	2	2.50322	2.51236	2.5215	0.032241	0.00863444	0.135671	0.0556009
chr14	20316324	20316423	14517254	0	-	0.494949	(0.49,0.53]	chr14	1136479	2	CDS	CDS:EXON_MRNA	CCNB1IP1	ENSG00000100814.18	ENST00000353689.8:ENST00000437553.6:ENST00000398160.6:ENST00000358932.9:ENST00000398169.7:ENST00000398163.6:ENST00000556854.5:ENST00000557665.5:ENST00000554047.1:ENST00000556563.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	2.30189	2.512205	2.72252	0.0161474	0.00685554	0.0860154	0.0471063
chr19	28459943	28460042	17525408	0	-	0.515152	(0.49,0.53]	chr19	1470922	25	INTRON	INTRON	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5	lncRNA	lncRNA	lncRNA	lncRNA	4	26	2	2.30189	2.512205	2.72252	0.0161474	0.00685554	0.0860154	0.0471063
chr5	72911794	72911892	6029421	0	+	0.367347	(0.36,0.39]	chr5	472817	32	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	38	2	1.73106	2.51193	3.2928	0.0123344	2.65442e-4	0.0707783	0.004287
chr19	38383290	38383390	17320772	0	+	0.58	(0.53,0.59]	chr19	1433590	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000602911.5:ENST00000590331.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	87	2	1.79975	2.51185	3.22395	0.00857256	5.81032e-6	0.0552386	1.75356e-4
chr10	102162457	102162551	11226684	0	+	0.308511	(0.29,0.33]	chr10	854877	3	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	42	2	1.99389	2.511765	3.02964	0.00896841	6.35336e-5	0.0569518	0.00124813
chr11	8683201	8683265	11790589	0	+	0.640625	(0.59,1]	chr11	902643	1	CDS	CDS:UTR5:EXON_MRNA	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000529227.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	468	2	2.32347	2.511705	2.69994	1.47748e-4	7.59743e-6	0.00269793	2.19458e-4
chr11	66284636	66284718	12423974	0	-	0.573171	(0.53,0.59]	chr11	964474	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	YIF1A	ENSG00000174851.16	ENST00000359461.10:ENST00000376901.9:ENST00000471387.6:ENST00000526497.5:ENST00000485820.1:ENST00000496746.5:ENST00000494836.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	55	2	2.37842	2.511585	2.64475	0.00453071	7.03525e-4	0.0351187	0.00848325
chr20	483060	483160	17871444	0	-	0.39	(0.36,0.39]	chr20	1511949	44	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	70	2	1.54142	2.511435	3.48145	0.0117546	2.22295e-6	0.0686664	7.83144e-5
chr20	49280853	49280935	17812198	0	+	0.426829	(0.42,0.455]	chr20	1506725	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFAS1	ENSG00000177410.13	ENST00000371743.8:ENST00000417721.5:ENST00000441722.5:ENST00000450535.5:ENST00000458653.5:ENST00000428008.6:ENST00000620594.2:ENST00000652916.1:ENST00000326677.9:ENST00000623640.1:ENST00000659056.1	lncRNA	lncRNA	lncRNA	lncRNA	5	27	2	1.96397	2.51143	3.05889	0.0138503	0.00524205	0.0759947	0.0399155
chr1	182853305	182853361	594817	0	+	0.553571	(0.53,0.59]	chr1	61556	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000483416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	2.22207	2.511335	2.8006	0.00910511	0.00233666	0.0576716	0.0221314
chr1	19086144	19086207	875698	0	-	0.587302	(0.53,0.59]	chr1	89899	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	1.90953	2.51114	3.11275	0.0517711	0.00407571	0.193577	0.032143
chr10	72274947	72275017	11111173	0	+	0.7	(0.59,1]	chr10	845357	2	CDS	CDS:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	63	2	2.0452	2.510865	2.97653	0.0179494	0.00142722	0.0939469	0.0153442
chr15	74410623	74410723	15374428	0	-	0.66	(0.59,1]	chr15	1215147	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.0452	2.510865	2.97653	0.0179494	0.00142722	0.0939469	0.0153442
chr16	87404581	87404680	15801172	0	+	0.323232	(0.29,0.33]	chr16	1257525	16	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	35	2	2.48886	2.5108449999999998	2.53283	0.0055888	5.94788e-4	0.0419759	0.00746384
chr1	194189260	194189359	640474	0	+	0.474747	(0.455,0.49]	chr1	64400	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-563D10.1:EEF1A1P14	ENSG00000227240.2:ENSG00000233057.1	ENST00000656143.1:ENST00000655677.1:ENST00000454538.1:ENST00000421195.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	26	2	2.50904	2.510825	2.51261	0.0310515	0.00280343	0.131262	0.0242354
chr4	102799406	102799500	5563950	0	-	0.414894	(0.39,0.42]	chr4	444361	1	CDS	CDS:UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5:ENST00000505307.5:ENST00000510129.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	67	2	2.38926	2.5107749999999998	2.63229	7.8066e-4	1.89756e-4	0.00973486	0.00302753
chr14	102042445	102042507	14495822	0	+	0.580645	(0.53,0.59]	chr14	1133246	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000645085.1:ENST00000644888.1:ENST00000644239.2:ENST00000643591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.14885	2.510745	2.87264	0.0262993	0.00168899	0.117164	0.0175515
chr5	138420876	138420962	6244497	0	+	0.569767	(0.53,0.59]	chr5	486556	3	CDS	CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	32	2	2.16037	2.510695	2.86102	0.0254312	0.0017805	0.117089	0.0172974
chr22	40312901	40312997	18376014	0	+	0.53125	(0.53,0.59]	chr22	1563708	1	CDS	CDS:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000335727.13:ENST00000446273.1	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.36244	2.51069	2.65894	0.0193255	0.0131162	0.0943643	0.073569
chr1	200409945	200410000	1443705	0	-	0.654545	(0.59,1]	chr1	144526	1	UTR5	UTR5:EXON_MRNA	ZNF281	ENSG00000162702.8	ENST00000294740.3:ENST00000367353.2:ENST00000367352.3	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.42639	2.5105	2.59461	0.0409084	0.0259455	0.163285	0.117079
chr2	87455558	87455645	1931416	0	+	0.597701	(0.59,1]	chr2	182227	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYTOR:RP13-511M20.1	ENSG00000222041.11:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000645257.1:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5	lncRNA	lncRNA	lncRNA	lncRNA	2	29	2	2.4994	2.51045	2.5215	0.0333573	0.032241	0.137922	0.135671
chr7	100678164	100678231	8428128	0	+	0.626866	(0.59,1]	chr7	643345	2	CDS	CDS:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000451587.5:ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000431068.5:ENST00000393924.1:ENST00000469287.5:ENST00000470354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	29	2	2.4994	2.51045	2.5215	0.0333573	0.032241	0.137922	0.135671
chr8	144396423	144396500	10148644	0	-	0.675325	(0.59,1]	chr8	763589	2	CDS	CDS:EXON_MRNA:INTRON	CPSF1	ENSG00000071894.17	ENST00000616140.2:ENST00000620219.4:ENST00000531042.5:ENST00000527827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.4994	2.51045	2.5215	0.0333573	0.032241	0.137922	0.135671
chrX	135032554	135032625	18865050	0	+	0.647887	(0.59,1]	chrX	1607586	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	29	2	2.4994	2.51045	2.5215	0.0333573	0.032241	0.137922	0.135671
chr11	34100939	34101037	11905504	0	+	0.357143	(0.33,0.36]	chr11	909587	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	58	2	2.22098	2.51032	2.79966	0.00172428	5.31274e-5	0.0178074	0.00108035
chr1	231364439	231364538	1548244	0	-	0.383838	(0.36,0.39]	chr1	155129	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	2.28639	2.5101649999999998	2.73394	0.00768469	0.00131831	0.050396	0.0143836
chr17	16441209	16441225	16142087	0	+	0.125	[0,0.29]	chr17	1300759	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000658116.1:ENST00000492250.5:ENST00000654356.1:ENST00000475953.5:ENST00000470491.6:ENST00000581913.5:ENST00000660462.1:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	18	44	2	1.93829	2.51016	3.08203	0.00149489	7.1311e-4	0.0159607	0.0085671400000000009
chr7	121295552	121295652	8496825	0	+	0.38	(0.36,0.39]	chr7	648450	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	26	122	2	2.47574	2.51011	2.54448	6.83076e-5	1.15778e-5	0.0014507	3.09867e-4
chr5	10377797	10377894	5874940	0	+	0.402062	(0.39,0.42]	chr5	461911	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	35	2	2.149	2.5101050000000003	2.87121	0.0149155	4.65001e-4	0.0812412	0.00615886
chr12	129111085	129111183	13153747	0	+	0.438776	(0.42,0.455]	chr12	1027739	16	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM132D-AS1	ENSG00000249196.6	ENST00000512133.6:ENST00000542535.5:ENST00000541320.5:ENST00000510001.6:ENST00000537367.5:ENST00000508925.6:ENST00000540739.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	31	2	2.44942	2.5099650000000002	2.57051	0.0265466	0.0016479	0.120071	0.0163521
chr4	44700439	44700537	4816766	0	+	0.479592	(0.455,0.49]	chr4	397340	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GUF1	ENSG00000151806.14	ENST00000281543.6:ENST00000506793.5:ENST00000511493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	30	2	2.18128	2.509935	2.83859	0.0111696	0.00215336	0.0665375	0.0208395
chr1	151266373	151266439	471387	0	+	0.515152	(0.49,0.53]	chr1	48106	2	CDS	CDS:UTR3:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000476855.5:ENST00000445776.1:ENST00000427779.5:ENST00000470396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.45798	2.509905	2.56183	0.0261296	0.00353238	0.118976	0.029076
chr2	69938284	69938383	1878428	0	+	0.525253	(0.49,0.53]	chr2	177393	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	2.45798	2.509905	2.56183	0.0261296	0.00353238	0.118976	0.029076
chr12	102076796	102076847	13508159	0	-	0.411765	(0.39,0.42]	chr12	1061942	1	CDS	CDS:UTR3:EXON_MRNA	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000546385.5:ENST00000251074.5:ENST00000547269.1:ENST00000551744.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.13132	2.50984	2.88836	0.02908	0.0102432	0.127648	0.062872
chr16	58530296	58530347	15966325	0	-	0.392157	(0.39,0.42]	chr16	1281087	2	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000570139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.13132	2.50984	2.88836	0.02908	0.0102432	0.127648	0.062872
chr2	47799586	47799685	1788197	0	+	0.40404	(0.39,0.42]	chr2	172666	7	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.13132	2.50984	2.88836	0.02908	0.0102432	0.127648	0.062872
chr8	47849440	47849503	9816265	0	-	0.412698	(0.39,0.42]	chr8	742641	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.13132	2.50984	2.88836	0.02908	0.0102432	0.127648	0.062872
chr1	11949839	11949906	45230	0	+	0.537313	(0.53,0.59]	chr1	5721	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000485046.5:ENST00000449038.5:ENST00000196061.5:ENST00000358133.5:ENST00000429000.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.50447	2.509735	2.515	0.0301162	0.0292633	0.130016	0.129773
chr17	42795032	42795120	16229956	0	+	0.556818	(0.53,0.59]	chr17	1313459	4	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	WNK4	ENSG00000126562.17	ENST00000246914.10:ENST00000591448.5:ENST00000587745.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	18	2	2.50447	2.509735	2.515	0.0301162	0.0292633	0.130016	0.129773
chr19	3466340	3466439	17202187	0	+	0.575758	(0.53,0.59]	chr19	1413755	37	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.50447	2.509735	2.515	0.0301162	0.0292633	0.130016	0.129773
chr19	6440751	6440849	17442464	0	-	0.55102	(0.53,0.59]	chr19	1456911	8	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	18	2	2.50447	2.509735	2.515	0.0301162	0.0292633	0.130016	0.129773
chr19	40232488	40232587	17565153	0	-	0.535354	(0.53,0.59]	chr19	1476051	23	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.50447	2.509735	2.515	0.0301162	0.0292633	0.130016	0.129773
chr21	46221853	46221914	18281228	0	-	0.557377	(0.53,0.59]	chr21	1550912	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.50447	2.509735	2.515	0.0301162	0.0292633	0.130016	0.129773
chr1	186318524	186318603	1411762	0	-	0.468354	(0.455,0.49]	chr1	142780	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000467810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	30	2	2.26324	2.5095549999999998	2.75587	0.00868189	0.00293507	0.0558093	0.025146
chr5	139307695	139307785	6248864	0	+	0.488889	(0.455,0.49]	chr5	486959	3	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	58	2	1.56242	2.50934	3.45626	0.0198935	1.18079e-5	0.0966287	3.14877e-4
chr16	88721893	88721979	16074475	0	-	0.639535	(0.59,1]	chr16	1291651	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	39	2	1.96416	2.5091799999999997	3.0542	0.044741	0.00663549	0.166115	0.0456243
chr19	40458376	40458460	17566592	0	-	0.630952	(0.59,1]	chr19	1476401	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	146	2	2.23367	2.509175	2.78468	0.00200748	1.30667e-4	0.0190066	0.00243846
chr8	127738462	127738562	9612652	0	+	0.69	(0.59,1]	chr8	728488	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MYC	ENSG00000136997.21	ENST00000259523.10:ENST00000517291.2:ENST00000651626.1:ENST00000377970.6:ENST00000524013.2:ENST00000621592.8:ENST00000520751.1:ENST00000652288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	111	2	1.91097	2.50908	3.10719	0.0064672	1.92106e-4	0.0454205	0.00305521
chr2	200583644	200583734	2307057	0	+	0.3	(0.29,0.33]	chr2	208388	3	UTR3	UTR3:EXON_MRNA	SGO2	ENSG00000163535.18	ENST00000357799.9	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.24226	2.509055	2.77585	0.0306054	0.0143131	0.130226	0.0780602
chr12	67302419	67302517	12934029	0	+	0.408163	(0.39,0.42]	chr12	1008084	2	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	2.149	2.508975	2.86895	0.0149155	0.00177945	0.0812412	0.0172974
chr19	12699200	12699297	17470231	0	-	0.463918	(0.455,0.49]	chr19	1462936	1	UTR3	UTR3:EXON_MRNA	TNPO2	ENSG00000105576.16	ENST00000425528.6:ENST00000356861.9	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.04847	2.5088600000000003	2.96925	0.0192065	0.00698725	0.0943643	0.0473262
chr8	123209425	123209496	9588623	0	+	0.309859	(0.29,0.33]	chr8	727200	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	13	64	2	1.67976	2.508715	3.33767	0.023292	8.32861e-7	0.110214	3.41526e-5
chrX	53379208	53379308	19076614	0	-	0.47	(0.455,0.49]	chrX	1622486	52	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.92777	2.50869	3.08961	0.0286531	0.00445157	0.128685	0.0340751
chr1	1315887	1315971	827084	0	-	0.488095	(0.455,0.49]	chr1	82227	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS11	ENSG00000127054.21	ENST00000540437.5:ENST00000545578.5:ENST00000620829.4:ENST00000618806.4:ENST00000435064.6:ENST00000323275.10:ENST00000411962.5:ENST00000462432.5:ENST00000419704.5:ENST00000458452.7:ENST00000421495.6:ENST00000532772.5:ENST00000450926.6:ENST00000527098.5:ENST00000528879.5:ENST00000531377.5:ENST00000434694.6:ENST00000488042.6:ENST00000526797.5:ENST00000526332.5:ENST00000430786.5:ENST00000527719.5:ENST00000530031.5:ENST00000526113.1:ENST00000526904.5:ENST00000525603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	51	2	2.40166	2.50862	2.61558	0.00184897	6.27085e-4	0.0185736	0.00779876
chr11	102396721	102396818	12562685	0	-	0.319588	(0.29,0.33]	chr11	974345	5	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	18	73	2	2.42264	2.5086199999999996	2.5946	4.30128e-4	3.30088e-5	0.00620274	7.3026e-4
chr1	150557493	150557558	468492	0	+	0.6	(0.59,1]	chr1	47480	1	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	4	54	2	2.03921	2.508615	2.97802	0.0371471	0.00133365	0.151849	0.0139317
chr6	144095397	144095497	8006757	0	-	0.61	(0.59,1]	chr6	611845	1	CDS_START	CDS_START:CDS:EXON_MRNA	SF3B5	ENSG00000169976.7	ENST00000367569.4	protein_coding	protein_coding	protein_coding	protein_coding	5	64	2	2.44587	2.508605	2.57134	0.0105307	0.00259175	0.0644466	0.0237245
chr6	96553503	96553601	7281658	0	+	0.387755	(0.36,0.39]	chr6	561255	1	UTR3	UTR3:EXON_MRNA	UFL1	ENSG00000014123.10	ENST00000369278.5	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.32678	2.508565	2.69035	0.0193538	0.00123789	0.0943643	0.013161
chr19	12944319	12944404	17238407	0	+	0.623529	(0.59,1]	chr19	1421071	5	UTR3	UTR3:EXON_MRNA	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	371	2	2.24207	2.508375	2.77468	4.17311e-4	6.75885e-6	0.00610827	1.99919e-4
chr17	18209856	18209954	16150157	0	+	0.336735	(0.33,0.36]	chr17	1301927	16	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	2.31697	2.508235	2.6995	0.017838	0.00966431	0.0934844	0.0606263
chr14	77715771	77715841	14415764	0	+	0.471429	(0.455,0.49]	chr14	1126907	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SLIRP	ENSG00000119705.10	ENST00000613856.4:ENST00000238688.9:ENST00000557431.5:ENST00000557623.5:ENST00000557342.6:ENST00000555890.5:ENST00000556831.5:ENST00000556310.1:ENST00000556375.5:ENST00000553981.1:ENST00000556956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	67	2	2.18348	2.508155	2.83283	6.06795e-4	5.12912e-4	0.00817698	0.00665221
chrX	24055614	24055678	18616455	0	+	0.421875	(0.42,0.455]	chrX	1589784	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	110	2	1.82443	2.507975	3.19152	0.00665171	4.1205e-7	0.0457102	1.87917e-5
chr9	128169462	128169519	10863737	0	-	0.491228	(0.49,0.53]	chr9	823398	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	55	2	1.46766	2.507565	3.54747	0.0523669	6.21089e-6	0.194793	1.85694e-4
chr17	47680019	47680076	16251960	0	+	0.421053	(0.42,0.455]	chr17	1316751	1	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	34	2	1.97508	2.507555	3.04003	0.0147202	7.68268e-4	0.0802571	0.00916171
chr9	124858017	124858067	10852988	0	-	0.58	(0.53,0.59]	chr9	822046	1	CDS	CDS:UTR3:EXON_MRNA	RPL35	ENSG00000136942.15	ENST00000373570.8:ENST00000348462.6:ENST00000487431.1:ENST00000493018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	272	2	2.31317	2.507545	2.70192	1.56931e-5	6.46313e-6	3.99695e-4	2.1067e-4
chr16	28834599	28834693	15620376	0	+	0.606383	(0.59,1]	chr16	1238466	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	20	232	2	2.49685	2.5073999999999996	2.51795	2.94016e-4	8.67157e-5	0.00465665	0.0016155
chr6	49615771	49615871	7729709	0	-	0.36	(0.33,0.36]	chr6	592969	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9:ENST00000646963.1:ENST00000642530.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	49	2	1.87524	2.5072	3.13916	0.00509273	4.50423e-5	0.0376359	0.0010411
chr12	53018797	53018866	12884409	0	+	0.507246	(0.49,0.53]	chr12	1001738	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1:ENST00000550025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	64	2	1.92071	2.507035	3.09336	0.00291545	1.28432e-4	0.0250116	0.00241206
chr5	72896457	72896556	6029259	0	+	0.40404	(0.39,0.42]	chr5	472778	1	CDS	CDS:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000605210.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	1.96364	2.50697	3.0503	0.00890556	0.00570576	0.0565003	0.0424438
chr13	46126410	46126508	14009604	0	-	0.44898	(0.42,0.455]	chr13	1098488	6	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	23	117	2	2.06299	2.506875	2.95076	4.02944e-4	5.13544e-6	0.00593039	1.58468e-4
chr15	52046099	52046189	14935305	0	+	0.333333	(0.33,0.36]	chr15	1174207	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MAPK6	ENSG00000069956.13	ENST00000558063.5:ENST00000560254.1:ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000558100.1:ENST00000680652.1:ENST00000558841.1:ENST00000558891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	2.17058	2.5067950000000003	2.84301	0.01664	5.76955e-4	0.0878065	0.00731854
chr7	128758953	128759037	8521741	0	+	0.47619	(0.455,0.49]	chr7	650177	2	CDS	CDS:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	12	71	2	1.8078	2.50678	3.20576	0.00913341	6.06648e-6	0.0579028	1.82424e-4
chr13	28668493	28668574	13661192	0	+	0.407407	(0.39,0.42]	chr13	1076733	1	CDS_START	CDS_START:CDS:EXON_MRNA	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	12	63	2	2.3075	2.506665	2.70583	0.00129243	9.63515e-5	0.0141493	0.00175267
chr2	157259149	157259245	2152115	0	+	0.4375	(0.42,0.455]	chr2	198573	11	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.32656	2.506005	2.68545	0.00298867	0.00135767	0.0255712	0.0146849
chr13	98021822	98021920	13859283	0	+	0.387755	(0.36,0.39]	chr13	1086746	1	UTR3	UTR3:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	2.37674	2.505975	2.63521	0.00633242	0.00529284	0.0446708	0.0390084
chr20	38089974	38090074	17782056	0	+	0.55	(0.53,0.59]	chr20	1502505	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000618318.1:ENST00000614670.1:ENST00000471511.1:ENST00000484683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	29	2	2.22207	2.505935	2.7898	0.0128364	0.00910511	0.0719798	0.0576716
chr1	111456692	111456755	407310	0	+	0.47619	(0.455,0.49]	chr1	40179	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1:ENST00000464154.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	51	2	2.40916	2.505815	2.60247	0.00105201	8.0052e-4	0.0116806	0.00996169
chrX	47202357	47202430	18686777	0	+	0.561644	(0.53,0.59]	chrX	1593211	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11	protein_coding	protein_coding	protein_coding	protein_coding	8	56	2	2.45142	2.50572	2.56002	0.00634904	4.64724e-4	0.0446708	0.00615823
chr12	69353265	69353361	12941810	0	+	0.364583	(0.36,0.39]	chr12	1008795	1	UTR3	UTR3:EXON_MRNA	LYZ	ENSG00000090382.7	ENST00000261267.7:ENST00000549690.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr18	47840926	47841026	17109802	0	-	0.37	(0.36,0.39]	chr18	1405054	321	UTR3	UTR3:EXON_MRNA	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr2	189775560	189775660	3082890	0	-	0.39	(0.36,0.39]	chr2	272436	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ORMDL1	ENSG00000128699.14	ENST00000392349.9:ENST00000392350.7:ENST00000325795.7:ENST00000409519.5:ENST00000458355.1:ENST00000442547.5	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr3	15807357	15807457	4055449	0	-	0.39	(0.36,0.39]	chr3	340889	93	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr3	60196632	60196732	4221862	0	-	0.37	(0.36,0.39]	chr3	355981	1159	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr6	4943545	4943615	7021914	0	+	0.385714	(0.36,0.39]	chr6	538433	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5:ENST00000469671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr6	149738693	149738745	8019005	0	-	0.365385	(0.36,0.39]	chr6	612737	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8:ENST00000403890.7:ENST00000367402.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr7	99891575	99891673	8948959	0	-	0.377551	(0.36,0.39]	chr7	683376	13	UTR3	UTR3:EXON_MRNA:INTRON	TRIM4	ENSG00000146833.16	ENST00000447480.5:ENST00000349062.7:ENST00000355947.6	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.38564	2.505645	2.62565	0.0476159	0.0219469	0.17993	0.103959
chr22	19435712	19435787	18295308	0	+	0.56	(0.53,0.59]	chr22	1552703	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPL40	ENSG00000185608.9	ENST00000333130.4:ENST00000443660.5:ENST00000471259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	39	2	1.78041	2.50563	3.2308500000000002	0.0407112	2.81517e-4	0.163285	0.00415519
chr1	156742299	156742395	1316751	0	-	0.489583	(0.455,0.49]	chr1	133965	3	UTR3	UTR3:EXON_MRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5	protein_coding	protein_coding	protein_coding	protein_coding	18	100	2	2.49923	2.505585	2.51194	3.74025e-4	3.17642e-5	0.0056063	7.05916e-4
chr3	156540735	156540834	4538639	0	-	0.333333	(0.33,0.36]	chr3	376076	13	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	14	72	2	2.01701	2.5055300000000003	2.99405	0.00697043	3.50325e-6	0.0474694	1.1444e-4
chr1	200407515	200407614	1443679	0	-	0.444444	(0.42,0.455]	chr1	144520	5	CDS	CDS:EXON_MRNA	ZNF281	ENSG00000162702.8	ENST00000294740.3:ENST00000367353.2:ENST00000367352.3	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.95205	2.50547	3.05889	0.0248244	0.00524205	0.113644	0.0399155
chr20	16740905	16741005	17714220	0	+	0.45	(0.42,0.455]	chr20	1495196	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SNRPB2	ENSG00000125870.11	ENST00000377943.9:ENST00000246071.8	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.95205	2.50547	3.05889	0.0248244	0.00524205	0.113644	0.0399155
chr19	2324131	2324181	17423008	0	-	0.58	(0.53,0.59]	chr19	1453483	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6:ENST00000589532.5:ENST00000591515.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	39	2	2.27113	2.505435	2.73974	0.0178853	9.00802e-4	0.0918323	0.0102618
chr6	31828817	31828913	7116695	0	+	0.625	(0.59,1]	chr6	546209	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	19	199	2	1.61041	2.5052950000000003	3.40018	0.00784327	6.19968e-6	0.0513122	2.03001e-4
chr2	74892295	74892391	1893442	0	+	0.375	(0.36,0.39]	chr2	179646	15	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.94692	2.5049200000000003	3.06292	0.0192083	0.00499846	0.0943643	0.0370021
chr6	153282643	153282733	8031079	0	-	0.655556	(0.59,1]	chr6	614220	5	EXON_PSEUDO	EXON_PSEUDO	RP11-475C16.1	ENSG00000218426.5	ENST00000492974.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	254	2	2.06517	2.5047800000000002	2.94439	0.00257469	5.6278e-6	0.0235828	1.70957e-4
chr10	70161003	70161069	11560497	0	-	0.439394	(0.42,0.455]	chr10	879593	1	CDS	CDS:EXON_MRNA	SAR1A	ENSG00000079332.15	ENST00000373242.6:ENST00000373241.9:ENST00000373238.5:ENST00000431664.6:ENST00000373236.1	protein_coding	protein_coding	protein_coding	protein_coding	11	57	2	2.19982	2.50471	2.8096	0.00253237	6.18521e-4	0.0233955	0.00769692
chr6	33201245	33201345	7121270	0	+	0.71	(0.59,1]	chr6	547376	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC39A7	ENSG00000112473.18	ENST00000444757.5:ENST00000374675.7:ENST00000374677.8	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.72057	2.50459	3.28861	0.0314051	0.0028753	0.131369	0.0256141
chr7	152135398	152135494	9134879	0	-	0.291667	(0.29,0.33]	chr7	698305	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	18	2	2.06067	2.504555	2.94844	0.0384863	0.00217122	0.149227	0.0208941
chr12	53415660	53415758	12886225	0	+	0.438776	(0.42,0.455]	chr12	1002329	46	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.34191	2.5044399999999998	2.66697	0.0190326	0.0159091	0.0958835	0.0854674
chr14	103339638	103339720	14502193	0	+	0.426829	(0.42,0.455]	chr14	1134025	1	CDS	CDS:EXON_MRNA	EIF5	ENSG00000100664.11	ENST00000216554.8:ENST00000392715.6:ENST00000558506.1:ENST00000561380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	2.19674	2.504245	2.81175	0.0254904	0.00227654	0.117089	0.0209546
chr6	24708776	24708843	7638812	0	-	0.447761	(0.42,0.455]	chr6	581806	1	CDS	CDS:EXON_MRNA	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.19674	2.504245	2.81175	0.0254904	0.00227654	0.117089	0.0209546
chr22	19723075	19723174	18295908	0	+	0.737374	(0.59,1]	chr22	1552883	7	UTR3	UTR3:EXON_MRNA	SEPTIN5:SEPT5-GP1BB	ENSG00000184702.20:ENSG00000284874.1	ENST00000455784.7:ENST00000406395.5:ENST00000406172.6:ENST00000455843.5:ENST00000438754.6:ENST00000431044.5:ENST00000470814.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	29	2	2.39747	2.504105	2.61074	0.0430221	0.025486	0.161091	0.117089
chr2	10123793	10123852	1628980	0	+	0.38983	(0.36,0.39]	chr2	161710	2	CDS	CDS:EXON_MRNA	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000459969.5:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000461327.5:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	57	2	2.13285	2.5040750000000003	2.8753	0.00240374	6.48632e-5	0.0226192	0.00126613
chr2	216119042	216119103	2379836	0	+	0.42623	(0.42,0.455]	chr2	213774	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.19674	2.504055	2.81137	0.0254904	0.0120386	0.117089	0.0700876
chr3	47850689	47850784	4163742	0	-	0.421053	(0.42,0.455]	chr3	348488	1	UTR3	UTR3:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.19674	2.504055	2.81137	0.0254904	0.0120386	0.117089	0.0700876
chr5	69365141	69365240	6625899	0	-	0.484848	(0.455,0.49]	chr5	511949	2	CDS	CDS:EXON_MRNA:INTRON	AK6:TAF9	ENSG00000085231.14:ENSG00000273841.5	ENST00000380822.9:ENST00000502819.5:ENST00000380818.7:ENST00000512561.5:ENST00000618980.1:ENST00000217893.10:ENST00000506736.1:ENST00000328663.8:ENST00000503245.5:ENST00000509462.5	protein_coding	protein_coding	protein_coding	protein_coding	13	69	2	2.23155	2.50382	2.77609	5.12443e-4	2.98403e-4	0.00665221	0.00471684
chr9	131222853	131222930	10496619	0	+	0.519481	(0.49,0.53]	chr9	793369	2	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000530491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	2.3044	2.503735	2.70307	0.00696379	0.00363585	0.0474632	0.0298137
chr8	143580505	143580567	10145108	0	-	0.564516	(0.53,0.59]	chr8	762495	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	EEF1D	ENSG00000104529.18	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000618139.3:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000526838.5:ENST00000532741.5:ENST00000527741.5:ENST00000530109.5:ENST00000529576.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1:ENST00000526786.5:ENST00000530616.5:ENST00000530848.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	31	2	2.36244	2.503595	2.64475	0.0131162	0.00453071	0.073569	0.0351187
chr9	96949585	96949682	10754222	0	-	0.546392	(0.53,0.59]	chr9	814162	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000645073.1:ENST00000637076.1:ENST00000637099.1:ENST00000637864.1:ENST00000652726.1:ENST00000637811.1:ENST00000650909.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	4	31	2	2.37399	2.503575	2.63316	0.0126178	0.00474401	0.0717599	0.0361423
chr17	41691414	41691511	16226850	0	+	0.402062	(0.39,0.42]	chr17	1312506	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000482111.1:ENST00000310837.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	147	2	1.84189	2.50342	3.16495	0.0027775	9.30016e-8	0.0248328	5.24771e-6
chr10	17234692	17234755	10938827	0	+	0.603175	(0.59,1]	chr10	833000	1	CDS	CDS:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5:ENST00000421459.2:ENST00000495528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	2.42381	2.50325	2.58269	0.0067313	0.00452614	0.0461258	0.0346018
chr1	179917549	179917647	580798	0	+	0.408163	(0.39,0.42]	chr1	60265	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000271583.7:ENST00000435319.8:ENST00000474875.5:ENST00000447964.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	2.30055	2.50323	2.70591	0.0185716	0.0070645	0.0932453	0.0477419
chr17	29550805	29550905	16181261	0	+	0.32	(0.29,0.33]	chr17	1305956	79	UTR3	UTR3:EXON_MRNA	TAOK1	ENSG00000160551.12	ENST00000261716.8	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.36742	2.5027749999999997	2.63813	0.0147368	0.00803229	0.0801529	0.0528968
chr14	68789039	68789138	14684721	0	-	0.686869	(0.59,1]	chr14	1149951	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFP36L1	ENSG00000185650.10	ENST00000555997.1:ENST00000439696.3:ENST00000336440.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	53	2	2.11074	2.50274	2.89474	0.0305	0.00190546	0.130204	0.018313
chr14	52642679	52642778	14630057	0	-	0.292929	(0.29,0.33]	chr14	1145962	29	UTR3	UTR3:EXON_MRNA	ERO1A	ENSG00000197930.13	ENST00000395686.8	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	1.61234	2.50246	3.39258	0.0360321	3.75753e-5	0.145024	9.03577e-4
chr4	109712082	109712182	5594067	0	-	0.29	[0,0.29]	chr4	446363	22	UTR3	UTR3:EXON_MRNA	PLA2G12A	ENSG00000123739.11	ENST00000243501.10	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.15488	2.502335	2.84979	0.0436536	6.05262e-4	0.170594	0.00756349
chrX	72272670	72272770	19107957	0	-	0.52	(0.49,0.53]	chrX	1625630	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS4X	ENSG00000198034.11	ENST00000470671.1:ENST00000492695.1:ENST00000316084.10:ENST00000486733.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	59	345	2	2.38179	2.502335	2.62288	1.44516e-5	5.7348e-7	4.07746e-4	2.491e-5
chr21	39297228	39297327	18256805	0	-	0.414141	(0.39,0.42]	chr21	1548125	9	UTR3	UTR3:EXON_MRNA:INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000380800.7:ENST00000341322.4	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.38313	2.50222	2.62131	0.0128066	0.00609677	0.0725185	0.0439136
chr22	36524663	36524732	18499746	0	-	0.405797	(0.39,0.42]	chr22	1578465	2	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5:ENST00000457241.5:ENST00000432675.4:ENST00000402116.2:ENST00000496875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	2.38313	2.50222	2.62131	0.0128066	0.00609677	0.0725185	0.0439136
chr13	95170531	95170628	14110890	0	-	0.350515	(0.33,0.36]	chr13	1104414	1	CDS	CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	1.82394	2.50218	3.18042	0.0494504	3.92606e-4	0.18557	0.00539371
chr10	3778947	3779045	11348543	0	-	0.489796	(0.455,0.49]	chr10	865180	31	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	1.51376	2.502045	3.49033	0.0475178	7.92678e-4	0.17993	0.00933379
chr17	46030500	46030597	16565481	0	-	0.474227	(0.455,0.49]	chr17	1360684	7	UTR3	UTR3:EXON_MRNA	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000572218.5:ENST00000575318.6:ENST00000638275.1:ENST00000576870.5:ENST00000262419.10:ENST00000648792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	72	2	2.49923	2.50182	2.50441	3.74025e-4	2.04429e-4	0.0056063	0.00320878
chr11	61314368	61314430	12404045	0	-	0.580645	(0.53,0.59]	chr11	960222	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000538280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.34461	2.501775	2.65894	0.0457008	0.0193255	0.168044	0.0943643
chr19	35629596	35629673	17305851	0	+	0.584416	(0.53,0.59]	chr19	1431188	2	CDS	CDS:EXON_MRNA	RBM42	ENSG00000126254.12	ENST00000588161.5:ENST00000262633.9:ENST00000592202.5:ENST00000586618.5:ENST00000589559.5:ENST00000592526.1:ENST00000589871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.34461	2.501775	2.65894	0.0457008	0.0193255	0.168044	0.0943643
chr2	30643055	30643152	1709567	0	+	0.536082	(0.53,0.59]	chr2	167661	26	UTR3	UTR3:EXON_MRNA	LCLAT1	ENSG00000172954.14	ENST00000379509.8:ENST00000309052.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.34461	2.501775	2.65894	0.0457008	0.0193255	0.168044	0.0943643
chr7	44386010	44386110	8798711	0	-	0.57	(0.53,0.59]	chr7	671097	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000487118.1:ENST00000475952.1:ENST00000338427.10:ENST00000493613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	18	2	2.34461	2.501775	2.65894	0.0457008	0.0193255	0.168044	0.0943643
chr1	36180553	36180652	140904	0	+	0.535354	(0.53,0.59]	chr1	17526	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAP7D1	ENSG00000116871.16	ENST00000316156.8:ENST00000474796.2:ENST00000373150.8:ENST00000373151.6:ENST00000373148.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr11	6609511	6609575	11783079	0	+	0.546875	(0.53,0.59]	chr11	901973	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ILK	ENSG00000166333.14	ENST00000532063.5:ENST00000526711.5:ENST00000537806.5:ENST00000420936.6:ENST00000299421.9:ENST00000530016.5:ENST00000528995.5:ENST00000396751.6:ENST00000526318.2:ENST00000528784.5:ENST00000534706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr11	57332701	57332778	12394114	0	-	0.532468	(0.53,0.59]	chr11	958546	2	CDS	CDS:EXON_MRNA	SSRP1	ENSG00000149136.9	ENST00000293880.9:ENST00000278412.7:ENST00000526696.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr15	59080935	59081022	14959615	0	+	0.563218	(0.53,0.59]	chr15	1175631	1	CDS	CDS:EXON_MRNA	RNF111	ENSG00000157450.16	ENST00000348370.9:ENST00000559209.5:ENST00000557998.5:ENST00000561186.5:ENST00000558977.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr16	30953744	30953844	15632268	0	+	0.57	(0.53,0.59]	chr16	1240824	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AC135048.13:ORAI3	ENSG00000261487.1:ENSG00000175938.7	ENST00000566056.1:ENST00000562642.1:ENST00000318663.5:ENST00000566237.1:ENST00000562699.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr17	21017941	21018026	16477979	0	-	0.564706	(0.53,0.59]	chr17	1346741	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000582335.1:ENST00000577610.5:ENST00000578446.1:ENST00000476111.5:ENST00000584538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr17	73196567	73196659	16347688	0	+	0.576087	(0.53,0.59]	chr17	1325953	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-143K11.5:COG1	ENSG00000264860.1:ENSG00000166685.12	ENST00000580671.1:ENST00000618996.4:ENST00000299886.9:ENST00000438720.7:ENST00000582587.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr17	82750655	82750755	16385352	0	+	0.57	(0.53,0.59]	chr17	1332864	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FN3K	ENSG00000167363.14	ENST00000300784.8	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr7	29916771	29916869	8200187	0	+	0.530612	(0.53,0.59]	chr7	625501	24	UTR3	UTR3:EXON_MRNA	WIPF3	ENSG00000122574.11	ENST00000242140.9	protein_coding	protein_coding	protein_coding	protein_coding	2	18	2	2.35511	2.50174	2.64837	0.0445399	0.0199467	0.172163	0.0984041
chr11	118750512	118750610	12625432	0	-	0.438776	(0.42,0.455]	chr11	979521	29	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.03532	2.5016	2.96788	0.040947	0.00109784	0.163285	0.0119666
chr16	24219861	24219960	15599286	0	+	0.454545	(0.42,0.455]	chr16	1236920	52	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.03532	2.5016	2.96788	0.040947	0.00109784	0.163285	0.0119666
chr6	124974789	124974889	7381235	0	+	0.36	(0.33,0.36]	chr6	565864	28	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000454842.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	2.48427	2.50157	2.51887	0.0358636	0.00150101	0.147298	0.0152367
chr2	152694541	152694622	2944458	0	-	0.493827	(0.49,0.53]	chr2	261657	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000354363.11:ENST00000545856.7:ENST00000493468.7:ENST00000448428.2:ENST00000489741.1:ENST00000450303.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	28	2	2.13501	2.5015549999999998	2.8681	0.0287874	0.00175299	0.128869	0.0171299
chr9	41672350	41672406	10662118	0	-	0.428571	(0.42,0.455]	chr9	806769	2	EXON_SMALL	EXON_SMALL:INTRON	FAM242F:Y_RNA	ENSG00000275239.4:ENSG00000278028.1	ENST00000611780.4:ENST00000616655.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	6	35	2	2.48259	2.5012350000000003	2.51988	0.0031851	0.00300574	0.0267166	0.0267032
chr1	26945567	26945626	112014	0	+	0.525424	(0.49,0.53]	chr1	13510	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUDC	ENSG00000090273.14	ENST00000321265.10:ENST00000484772.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	46	2	1.85272	2.501235	3.14975	0.0211739	8.97896e-5	0.101864	0.0016645
chr1	100082890	100082987	376769	0	+	0.278351	[0,0.29]	chr1	36525	8	UTR3	UTR3:EXON_MRNA	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000639171.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	38	2	1.81505	2.501205	3.18736	0.0409713	2.21678e-5	0.163285	5.28492e-4
chr9	124414841	124414935	10850135	0	-	0.521277	(0.49,0.53]	chr9	821919	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000498485.5:ENST00000441097.1:ENST00000466951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	48	2	2.10199	2.5012049999999997	2.90042	0.00487463	3.88511e-4	0.0375573	0.00534839
chr11	57817485	57817583	11953251	0	+	0.408163	(0.39,0.42]	chr11	914890	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	2.11399	2.501175	2.88836	0.014455	0.0102432	0.0787564	0.062872
chr5	133073229	133073329	6226855	0	+	0.41	(0.39,0.42]	chr5	484747	1	CDS	CDS:EXON_MRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.11399	2.501175	2.88836	0.014455	0.0102432	0.0787564	0.062872
chr16	173463	173471	15480735	0	+	0.625	(0.59,1]	chr16	1224197	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	73	2	2.39073	2.501115	2.6115	0.00584247	0.0027229	0.0422426	0.0245443
chr12	56724451	56724521	13352600	0	-	0.642857	(0.59,1]	chr12	1051860	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NACA:RP11-112B10.2	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000548563.5:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	384	2	2.31323	2.50109	2.68895	2.15298e-4	1.20657e-5	0.0036077	3.21043e-4
chr1	112670725	112670824	411479	0	+	0.414141	(0.39,0.42]	chr1	40540	7	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	31	147	2	2.19439	2.50108	2.80777	9.19039e-5	3.05246e-6	0.00184101	1.02399e-4
chr1	171557329	171557419	537264	0	+	0.544444	(0.53,0.59]	chr1	57662	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	16	104	2	2.29592	2.501075	2.70623	1.99557e-4	1.88417e-4	0.0032588	0.00316147
chr1	228099012	228099112	744043	0	+	0.4	(0.39,0.42]	chr1	75099	11	UTR3	UTR3:EXON_MRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding	93	481	2	2.35792	2.500965	2.64401	5.44921e-6	1.67335e-7	1.81762e-4	8.72388e-6
chr3	184323082	184323161	3949217	0	+	0.506329	(0.49,0.53]	chr3	332426	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000444861.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	22	2	2.3044	2.50093	2.69746	0.0509448	0.00380414	0.181793	0.0317723
chr10	119168099	119168194	11717943	0	-	0.378947	(0.36,0.39]	chr10	893951	5	UTR3	UTR3:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	2.1437	2.50077	2.85784	0.0340515	0.00191736	0.141465	0.0183299
chr5	154865288	154865385	6315147	0	+	0.360825	(0.36,0.39]	chr5	492548	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CNOT8	ENSG00000155508.14	ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	2.1437	2.50077	2.85784	0.0340515	0.00191736	0.141465	0.0183299
chr12	76067453	76067473	13424073	0	-	0.5	(0.49,0.53]	chr12	1056668	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	39	2	2.21413	2.50068	2.78723	0.00995539	7.16432e-4	0.0621728	0.00859467
chr12	67306497	67306597	12934071	0	+	0.43	(0.42,0.455]	chr12	1008094	15	CDS	CDS:EXON_MRNA:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.40664	2.50063	2.59462	0.0062772	0.00445101	0.0445415	0.0340751
chr20	56369580	56369676	18019681	0	-	0.46875	(0.455,0.49]	chr20	1527153	3	UTR3	UTR3:EXON_MRNA	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5	protein_coding	protein_coding	protein_coding	protein_coding	9	49	2	2.16841	2.50062	2.83283	0.00221684	6.06795e-4	0.0205155	0.00817698
chr16	2770936	2771036	15494994	0	+	0.54	(0.53,0.59]	chr16	1227822	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	65	2	2.38191	2.5005699999999997	2.61923	0.00477439	1.69911e-4	0.0368489	0.00276512
chr17	81919549	81919648	16710025	0	-	0.474747	(0.455,0.49]	chr17	1377880	14	UTR3	UTR3:EXON_MRNA:INTRON	SIRT7:MAFG	ENSG00000187531.14:ENSG00000197063.11	ENST00000572902.5:ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	1.44061	2.50049	3.56037	0.029923	5.72551e-4	0.130016	0.0078026
chr16	30067233	30067254	15628400	0	+	0.52381	(0.49,0.53]	chr16	1239778	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	236	2	2.25764	2.500325	2.74301	1.03176e-4	5.63105e-7	0.00200788	2.45142e-5
chr1	167425950	167426050	523030	0	+	0.47	(0.455,0.49]	chr1	56157	100	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	30	2	2.15985	2.5003200000000003	2.84079	0.0128965	0.00201021	0.0722356	0.0190112
chr8	30237767	30237864	9253415	0	+	0.484536	(0.455,0.49]	chr8	708949	5	EXON_PSEUDO	EXON_PSEUDO	HSPA8P11	ENSG00000248159.1	ENST00000508840.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	30	2	2.15985	2.5003200000000003	2.84079	0.0128965	0.00201021	0.0722356	0.0190112
chr8	100919302	100919401	9976209	0	-	0.393939	(0.39,0.42]	chr8	752728	29	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	67	2	2.45536	2.500305	2.54525	6.03386e-4	1.8019e-4	0.00814312	0.00291352
chr1	35602383	35602481	938327	0	-	0.357143	(0.33,0.36]	chr1	98692	30	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.82006	2.50024	3.18042	0.0323353	3.92606e-4	0.135977	0.00539371
chr3	150542867	150542963	4517205	0	-	0.395833	(0.39,0.42]	chr3	374942	10	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	8	53	2	1.66154	2.499915	3.33829	0.0452475	6.66806e-6	0.174743	1.97401e-4
chr5	113013384	113013484	6153892	0	+	0.39	(0.36,0.39]	chr5	480730	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	55	2	2.23181	2.4997949999999998	2.76778	0.00365703	3.85903e-4	0.0307238	0.00532469
chr3	4984843	4984939	3277659	0	+	0.197917	[0,0.29]	chr3	288722	13	UTR3	UTR3:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	20	72	2	1.57036	2.4997499999999997	3.42914	0.0130981	3.81299e-7	0.0731173	1.74979e-5
chr7	148730041	148730122	8610384	0	+	0.382716	(0.36,0.39]	chr7	656634	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CUL1	ENSG00000055130.17	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000617797.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	1.97546	2.499715	3.02397	0.0239316	0.00674398	0.109927	0.0461258
chr7	107161229	107161326	8455231	0	+	0.278351	[0,0.29]	chr7	645853	18	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	24	89	2	2.2816	2.499645	2.71769	3.71259e-4	6.34104e-6	0.00557284	1.8889e-4
chr11	88293910	88294005	12533061	0	-	0.4	(0.39,0.42]	chr11	972518	16	UTR3	UTR3:EXON_MRNA:INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	31	2	2.13033	2.49964	2.86895	0.00865856	0.00177945	0.0557159	0.0172974
chr10	35483411	35483478	11009112	0	+	0.462687	(0.455,0.49]	chr10	837217	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	1.8708	2.499615	3.12843	0.0324007	0.00392855	0.134751	0.0322851
chr7	12336140	12336236	8683006	0	-	0.489583	(0.455,0.49]	chr7	663912	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	46	2	1.88914	2.49958	3.11002	0.0127583	1.15314e-4	0.0719798	0.0020426
chr9	128254891	128254980	10477625	0	+	0.438202	(0.42,0.455]	chr9	789798	3	UTR3	UTR3:EXON_MRNA	DNM1	ENSG00000106976.21	ENST00000372923.8:ENST00000341179.11:ENST00000393594.7:ENST00000628346.2:ENST00000486160.3:ENST00000627543.2:ENST00000634267.2:ENST00000630850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.36247	2.49956	2.63665	0.0462889	0.0048172	0.176878	0.0365653
chr19	4360652	4360747	17431395	0	-	0.673684	(0.59,1]	chr19	1454998	4	UTR3	UTR3:EXON_MRNA	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.14957	2.499505	2.84944	0.0128238	0.0126053	0.0719957	0.0719798
chr6	152972362	152972454	8029519	0	-	0.402174	(0.39,0.42]	chr6	614127	2	CDS	CDS:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	45	2	1.961	2.49947	3.03794	0.00719538	1.79125e-4	0.0486209	0.00289872
chr11	93721621	93721708	12076160	0	+	0.402299	(0.39,0.42]	chr11	930600	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP295:SCARNA9	ENSG00000166004.15:ENSG00000254911.3	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1:ENST00000530422.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	31	149	2	2.32903	2.49945	2.66987	7.50911e-5	2.61733e-6	0.00143057	9.89086e-5
chr14	77511584	77511684	14717352	0	-	0.41	(0.39,0.42]	chr14	1153348	57	UTR3	UTR3:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.37759	2.49945	2.62131	0.0428865	0.00609677	0.161091	0.0439136
chr21	38120357	38120408	18250129	0	-	0.392157	(0.39,0.42]	chr21	1547539	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KCNJ6:DSCR4	ENSG00000157542.11:ENSG00000184029.9	ENST00000645093.1:ENST00000398948.5:ENST00000328264.7:ENST00000482032.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	18	2	2.37759	2.49945	2.62131	0.0428865	0.00609677	0.161091	0.0439136
chr11	14513634	14513699	12282147	0	-	0.461538	(0.455,0.49]	chr11	949716	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RP11-140L24.4:PSMA1	ENSG00000256206.2:ENSG00000129084.18	ENST00000555531.1:ENST00000396394.7:ENST00000530457.5:ENST00000528307.5:ENST00000418988.2:ENST00000527632.1:ENST00000531023.1:ENST00000533331.5:ENST00000529524.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	93	2	2.28143	2.4993049999999997	2.71718	3.93144e-4	2.97392e-5	0.00584546	6.72989e-4
chr12	54463233	54463297	13344073	0	-	0.484375	(0.455,0.49]	chr12	1049898	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTSF1	ENSG00000170627.11	ENST00000546931.5:ENST00000552397.5:ENST00000305879.8:ENST00000552395.5:ENST00000546575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	46	2	2.40508	2.4991849999999998	2.59329	0.0022198	7.86326e-4	0.0211918	0.00929193
chr20	57358532	57358618	18021336	0	-	0.430233	(0.42,0.455]	chr20	1527343	2	UTR3	UTR3:EXON_MRNA	MTRNR2L3	ENSG00000256222.3	ENST00000543500.3	protein_coding	protein_coding	protein_coding	protein_coding	13	63	2	1.46104	2.499055	3.53707	0.0216096	6.65925e-6	0.103758	1.9719e-4
chr18	36156559	36156654	16825158	0	+	0.368421	(0.36,0.39]	chr18	1387613	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	2.32678	2.49894	2.6711	0.0193538	0.00434596	0.0943643	0.0335517
chr3	40457876	40457889	3429572	0	+	0.384615	(0.36,0.39]	chr3	298310	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000465325.1:ENST00000396203.7:ENST00000416518.1:ENST00000435633.5:ENST00000479563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	2.32678	2.49894	2.6711	0.0193538	0.00434596	0.0943643	0.0335517
chr1	149860143	149860240	1287075	0	-	0.474227	(0.455,0.49]	chr1	127846	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	H4C15	ENSG00000270276.2	ENST00000621520.1:ENST00000612061.1:ENST00000579512.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.15985	2.498885	2.83792	0.0128965	0.0110512	0.0722356	0.0665375
chr10	11884357	11884457	11368991	0	-	0.48	(0.455,0.49]	chr10	866995	97	INTRON	INTRON	PROSER2-AS1	ENSG00000225778.5	ENST00000445498.5	lncRNA	lncRNA	lncRNA	lncRNA	4	23	2	2.15985	2.498885	2.83792	0.0128965	0.0110512	0.0722356	0.0665375
chr3	5179943	5180040	3278258	0	+	0.28866000000000003	[0,0.29]	chr3	288772	13	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	15	56	2	2.42712	2.498715	2.57031	8.1794e-4	9.27476e-5	0.0101664	0.00169635
chr19	44909250	44909321	17349681	0	+	0.746479	(0.59,1]	chr19	1439244	1	UTR3	UTR3:EXON_MRNA	APOE	ENSG00000130203.10	ENST00000252486.9	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	2.00297	2.498675	2.99438	0.0125191	0.00776449	0.0713905	0.050813
chr1	37957905	37957998	949971	0	-	0.430108	(0.42,0.455]	chr1	100059	11	UTR3	UTR3:EXON_MRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.7601	2.4985850000000003	3.23707	0.0312663	2.71467e-4	0.132093	0.00404536
chr1	1054823	1054881	2446	0	+	0.741379	(0.59,1]	chr1	590	1	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	39	2	1.88006	2.498265	3.11647	0.0554008	0.00535979	0.191173	0.0406564
chr11	64766005	64766080	12419193	0	-	0.693333	(0.59,1]	chr11	962884	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5:ENST00000413725.5:ENST00000433274.6:ENST00000486867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	1.88006	2.498265	3.11647	0.0554008	0.00535979	0.191173	0.0406564
chr6	27810574	27810665	7105139	0	+	0.417582	(0.39,0.42]	chr6	543458	2	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	12	53	2	1.94189	2.4982499999999996	3.05461	0.00208619	8.55091e-4	0.0196013	0.0105173
chr8	100918904	100919004	9976205	0	-	0.39	(0.36,0.39]	chr8	752728	25	UTR3	UTR3:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7	protein_coding	protein_coding	protein_coding	protein_coding	32	142	2	2.30722	2.4981850000000003	2.68915	4.30984e-5	5.01072e-6	9.12504e-4	1.7067e-4
chr17	35624491	35624587	16206484	0	+	0.5	(0.49,0.53]	chr17	1309045	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5:ENST00000619183.1:ENST00000588116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	34	2	1.78308	2.498125	3.21317	0.0425234	3.08783e-4	0.167547	0.00445935
chr6	32168307	32168404	7664642	0	-	0.57732000000000006	(0.53,0.59]	chr6	586094	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	66	2	1.64521	2.49812	3.35103	0.0162808	2.54119e-5	0.0866972	5.894e-4
chrX	134426417	134426516	18863542	0	+	0.494949	(0.49,0.53]	chrX	1607356	12	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	2.45056	2.4980700000000002	2.54558	0.0024326	8.30002e-4	0.0228485	0.00973943
chrX	19351259	19351333	18604858	0	+	0.554054	(0.53,0.59]	chrX	1589017	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000423505.5:ENST00000422285.7:ENST00000492364.1:ENST00000355808.9:ENST00000379805.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	1.88327	2.49801	3.11275	0.0298124	0.00407571	0.129773	0.032143
chrX	153947754	153947854	19275556	0	-	0.53	(0.49,0.53]	chrX	1637875	3	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	2.48202	2.497845	2.51367	0.00138956	0.00120983	0.0143689	0.0135286
chr1	93360492	93360539	356105	0	+	0.468085	(0.455,0.49]	chr1	35142	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1:ENST00000481583.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.30139	2.497415	2.69344	0.0530131	0.0176068	0.195536	0.0925619
chr11	102350018	102350101	12112621	0	+	0.481928	(0.455,0.49]	chr11	932296	3	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	BIRC2	ENSG00000110330.9	ENST00000227758.7:ENST00000530675.5:ENST00000532832.5:ENST00000534646.5:ENST00000533742.5:ENST00000532672.5:ENST00000531259.5:ENST00000527465.1:ENST00000527910.5:ENST00000613397.4:ENST00000621637.1:ENST00000528344.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	2.30139	2.497415	2.69344	0.0530131	0.0176068	0.195536	0.0925619
chr16	47587667	47587763	15645641	0	+	0.458333	(0.455,0.49]	chr16	1243389	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PHKB	ENSG00000102893.16	ENST00000566044.5:ENST00000299167.12:ENST00000323584.10:ENST00000567402.5:ENST00000570047.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	15	2	2.30139	2.497415	2.69344	0.0530131	0.0176068	0.195536	0.0925619
chr7	44828466	44828565	8800304	0	-	0.464646	(0.455,0.49]	chr7	671362	18	UTR3	UTR3:EXON_MRNA	H2AZ2	ENSG00000105968.19	ENST00000222690.10	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.30139	2.497415	2.69344	0.0530131	0.0176068	0.195536	0.0925619
chrX	16841962	16842060	18594147	0	+	0.479592	(0.455,0.49]	chrX	1588438	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10:ENST00000485153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.30139	2.497415	2.69344	0.0530131	0.0176068	0.195536	0.0925619
chr17	59693752	59693852	16295595	0	+	0.57	(0.53,0.59]	chr17	1321773	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000579456.5:ENST00000472651.5:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	83	2	2.43271	2.497395	2.56208	9.01417e-4	1.4409e-4	0.0109447	0.00242438
chr5	142000864	142000961	6878175	0	-	0.556701	(0.53,0.59]	chr5	526950	3	UTR3	UTR3:EXON_MRNA:INTRON	GNPDA1	ENSG00000113552.16	ENST00000513454.5:ENST00000311337.11:ENST00000500692.6:ENST00000503794.5:ENST00000508177.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.87133	2.4973650000000003	3.1234	0.0308819	0.00390623	0.130016	0.0322851
chr9	131496070	131496168	10498796	0	+	0.510204	(0.49,0.53]	chr9	793636	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	1.56467	2.497105	3.42954	0.051923	0.00105489	0.18423900000000001	0.0123035
chr7	43803761	43803847	8259181	0	+	0.418605	(0.39,0.42]	chr7	628895	2	CDS	CDS:EXON_MRNA	BLVRA	ENSG00000106605.11	ENST00000265523.9:ENST00000402924.5:ENST00000486984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.99911	2.49709	2.99507	0.0477207	0.00637824	0.17993	0.0449937
chr1	161173953	161174049	1332786	0	-	0.520833	(0.49,0.53]	chr1	136732	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	B4GALT3	ENSG00000158850.15	ENST00000319769.10:ENST00000622395.4:ENST00000470882.5:ENST00000367998.5:ENST00000466504.5:ENST00000465740.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.12684	2.49697	2.8671	0.0134683	0.0100489	0.0744999	0.0623334
chr17	22204183	22204280	16168813	0	+	0.505155	(0.49,0.53]	chr17	1304328	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	25	2	2.12684	2.49697	2.8671	0.0134683	0.0100489	0.0744999	0.0623334
chr9	122261392	122261492	10840806	0	-	0.51	(0.49,0.53]	chr9	821273	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RBM18	ENSG00000119446.14	ENST00000417201.4:ENST00000483428.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	22	2	2.38097	2.4969349999999997	2.6129	0.0425419	0.0052746	0.167547	0.0389109
chr9	127447932	127447989	10859973	0	-	0.526316	(0.49,0.53]	chr9	822653	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	167	2	2.11437	2.496725	2.87908	1.28638e-4	3.49165e-6	0.00222617	1.26266e-4
chr10	17229275	17229348	10938766	0	+	0.739726	(0.59,1]	chr10	832981	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000497849.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	175	2	1.73726	2.49672	3.25618	0.00658832	1.26509e-5	0.0454205	3.33686e-4
chr5	149520289	149520384	6910508	0	-	0.336842	(0.33,0.36]	chr5	528536	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606299.2:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	33	2	1.95788	2.4967	3.03552	0.00652477	0.0012034	0.0455786	0.0134762
chr16	28822998	28823085	15620232	0	+	0.781609	(0.59,1]	chr16	1238389	1	UTR5	UTR5:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	49	2	2.38157	2.496155	2.61074	0.025486	0.00534794	0.117089	0.0392783
chr16	11846500	11846551	15856762	0	-	0.372549	(0.36,0.39]	chr16	1266800	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000574823.5:ENST00000570767.5:ENST00000572090.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	32	2	2.16717	2.49599	2.82481	0.0152504	6.14057e-4	0.0828908	0.00765639
chr2	171946707	171946783	2208347	0	+	0.368421	(0.36,0.39]	chr2	202129	1	CDS	CDS:EXON_MRNA:INTRON	HAT1	ENSG00000128708.13	ENST00000412731.5:ENST00000264108.5:ENST00000457761.6:ENST00000494601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	34	2	2.25794	2.49594	2.73394	0.00429221	0.00131831	0.0333617	0.0143836
chr3	181822930	181822990	4614276	0	-	0.583333	(0.53,0.59]	chr3	380752	2	EXON_SMALL	EXON_SMALL	RNA5SP150	ENSG00000199839.1	ENST00000362969.1	rRNA	rRNA	rRNA	rRNA	227	1405	2	2.06727	2.49592	2.92457	1.89346e-5	1.27173e-8	4.64552e-4	1.04373e-6
chrX	24057693	24057754	18616478	0	+	0.47541	(0.455,0.49]	chrX	1589792	2	CDS	CDS:EXON_MRNA:INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	52	2	1.89707	2.49576	3.09445	0.0033244	6.1765e-4	0.0277689	0.00822794
chr1	7843336	7843433	30397	0	+	0.391753	(0.39,0.42]	chr1	3564	7	UTR3	UTR3:EXON_MRNA	PER3	ENSG00000049246.15	ENST00000377532.8:ENST00000613533.4:ENST00000614998.4:ENST00000361923.2	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.49426	2.495635	2.49701	0.0339607	0.0085468	0.141431	0.0551026
chr14	21210725	21210824	14520513	0	-	0.393939	(0.39,0.42]	chr14	1137229	17	UTR3	UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.49426	2.495635	2.49701	0.0339607	0.0085468	0.141431	0.0551026
chr9	37866474	37866573	10257544	0	+	0.393939	(0.39,0.42]	chr9	772014	51	UTR3	UTR3:EXON_MRNA	DCAF10	ENSG00000122741.16	ENST00000242323.8:ENST00000377724.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.49426	2.495635	2.49701	0.0339607	0.0085468	0.141431	0.0551026
chr5	31820563	31820638	6517287	0	-	0.4	(0.39,0.42]	chr5	504780	1	EXON_SMALL	EXON_SMALL	RNU6-358P	ENSG00000252373.1	ENST00000516564.1	snRNA	snRNA	snRNA	snRNA	10	60	2	1.84551	2.495615	3.14572	0.0168113	9.48249e-6	0.0886699	2.63817e-4
chr10	56357424	56357523	11514046	0	-	0.282828	[0,0.29]	chr10	877457	3	UTR3	UTR3:EXON_MRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	15	2	2.16074	2.49557	2.8304	0.0222978	0.0121878	0.105845	0.0701019
chr11	32979670	32979770	11899537	0	+	0.28	[0,0.29]	chr11	909057	33	UTR3	UTR3:EXON_MRNA:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	19	2	1.72144	2.495525	3.26961	0.0389538	0.00229774	0.158558	0.0210664
chr2	233837478	233837576	3231739	0	-	0.357143	(0.33,0.36]	chr2	284581	9	UTR3	UTR3:EXON_MRNA	HJURP	ENSG00000123485.12	ENST00000433484.2:ENST00000432087.5:ENST00000441687.5:ENST00000411486.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	39	2	2.09934	2.4954650000000003	2.89159	0.0120497	1.48308e-4	0.0694419	0.00248688
chr9	83677804	83677882	10710529	0	-	0.576923	(0.53,0.59]	chr9	810206	2	CDS	CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	34	2	2.20093	2.495365	2.7898	0.0128364	0.00507963	0.0719798	0.037544
chr19	583400	583494	17188346	0	+	0.659574	(0.59,1]	chr19	1410791	7	UTR3	UTR3:EXON_MRNA	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000576925.4:ENST00000333511.9:ENST00000353555.9:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000576984.3:ENST00000571735.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	115	2	2.04286	2.495215	2.94757	0.0108394	8.06144e-5	0.0643837	0.00152571
chr6	119179140	119179237	7919320	0	-	0.319588	(0.29,0.33]	chr6	606471	21	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	9	33	2	1.9084	2.495045	3.08169	0.00606296	0.00114594	0.0432922	0.0130468
chr3	185818540	185818639	4628155	0	-	0.373737	(0.36,0.39]	chr3	382223	41	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1:ENST00000466214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	58	2	1.86118	2.494885	3.12859	0.0121414	1.08013e-5	0.0699297	2.93191e-4
chr19	1415342	1415441	17193047	0	+	0.343434	(0.33,0.36]	chr19	1412128	49	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	2.47163	2.4948	2.51797	0.0303594	0.0129725	0.130016	0.0724783
chrX	119789959	119790011	19192809	0	-	0.423077	(0.42,0.455]	chrX	1631603	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL39	ENSG00000198918.8	ENST00000361575.4:ENST00000468844.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	54	274	2	2.26708	2.494615	2.72215	1.44813e-5	9.20057e-7	3.73634e-4	4.12747e-5
chr21	44945628	44945727	18142476	0	+	0.454545	(0.42,0.455]	chr21	1539440	14	INTRON	INTRON	FAM207A	ENSG00000160256.13	ENST00000397826.7:ENST00000458015.1:ENST00000291634.11	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.93033	2.4946099999999998	3.05889	0.0505055	0.00524205	0.181202	0.0399155
chr7	119861627	119861727	9033667	0	-	0.28	[0,0.29]	chr7	689739	604	INTRON	INTRON	LINC02476	ENSG00000225546.6	ENST00000660268.1:ENST00000431071.5:ENST00000426413.2	lncRNA	lncRNA	lncRNA	lncRNA	9	34	2	1.56356	2.494395	3.42523	0.0431251	9.58862e-6	0.161433	2.93255e-4
chr3	40312096	40312178	3429119	0	+	0.329268	(0.29,0.33]	chr3	298224	2	UTR3	UTR3:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4	protein_coding	protein_coding	protein_coding	protein_coding	31	132	2	2.13419	2.4943400000000002	2.85449	4.97872e-4	4.81095e-7	0.0069784	2.13843e-5
chr12	909087	909186	12681675	0	+	0.434343	(0.42,0.455]	chr12	984184	4	UTR3	UTR3:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.07474	2.4942349999999998	2.91373	0.0338882	0.00892357	0.139841	0.0567495
chr16	58531957	58532016	15966344	0	-	0.440678	(0.42,0.455]	chr16	1281093	1	CDS	CDS:EXON_MRNA	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000563130.5:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.07474	2.4942349999999998	2.91373	0.0338882	0.00892357	0.139841	0.0567495
chr2	174075120	174075219	3020305	0	-	0.373737	(0.36,0.39]	chr2	267409	28	UTR3	UTR3:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000497760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	121	2	2.28087	2.4942200000000003	2.70757	1.61178e-4	5.03152e-6	0.00287786	1.55773e-4
chr3	129265710	129265792	3730503	0	+	0.560976	(0.53,0.59]	chr3	318929	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5:ENST00000513410.1:ENST00000509889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	25	2	2.35511	2.494135	2.63316	0.0445399	0.00474401	0.172163	0.0361423
chr3	195788518	195788617	4661152	0	-	0.575758	(0.53,0.59]	chr3	385270	99	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	25	2	2.35511	2.494135	2.63316	0.0445399	0.00474401	0.172163	0.0361423
chr6	163573403	163573503	7540861	0	+	0.29	[0,0.29]	chr6	575649	28	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	25	2	1.87547	2.49402	3.11257	0.0144841	0.00120521	0.0789039	0.0134827
chr14	75134200	75134298	14709068	0	-	0.255102	[0,0.29]	chr14	1152525	29	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9:ENST00000556969.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	33	2	2.16409	2.4939799999999996	2.82387	0.0125675	2.4558e-4	0.0716375	0.00371192
chr10	17235168	17235230	10938833	0	+	0.483871	(0.455,0.49]	chr10	833003	1	CDS	CDS:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	61	2	2.17632	2.4938450000000003	2.81137	0.00634339	4.71337e-5	0.0446708	9.78524e-4
chr20	59034222	59034320	18026305	0	-	0.357143	(0.33,0.36]	chr20	1527983	12	UTR3	UTR3:EXON_MRNA	PRELID3B	ENSG00000101166.16	ENST00000355937.9	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.28792	2.49371	2.6995	0.0239159	0.017838	0.112531	0.0934844
chr17	42842173	42842272	16230333	0	+	0.414141	(0.39,0.42]	chr17	1313600	7	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.11822	2.493585	2.86895	0.005418	0.00177945	0.0409315	0.0172974
chr22	21789308	21789406	18442651	0	-	0.336735	(0.33,0.36]	chr22	1572534	1	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.0111	2.4935799999999997	2.97606	0.0124964	0.00871774	0.071421	0.0558165
chr3	140979612	140979711	3783454	0	+	0.333333	(0.33,0.36]	chr3	322887	33	UTR3	UTR3:EXON_MRNA	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.0111	2.4935799999999997	2.97606	0.0124964	0.00871774	0.071421	0.0558165
chr6	26546545	26546642	7102838	0	+	0.350515	(0.33,0.36]	chr6	543213	12	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.0111	2.4935799999999997	2.97606	0.0124964	0.00871774	0.071421	0.0558165
chrX	77968225	77968318	19129661	0	-	0.333333	(0.33,0.36]	chrX	1626916	4	UTR3	UTR3:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	2.10153	2.493235	2.88494	0.00871844	6.89291e-4	0.0560911	0.00876781
chr16	28845911	28846008	15907793	0	-	0.556701	(0.53,0.59]	chr16	1273909	1	CDS	CDS:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000565012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	42	2	2.2732	2.4931900000000002	2.71318	0.00369236	0.00340745	0.030936	0.0283456
chr1	47368468	47368541	182542	0	+	0.452055	(0.42,0.455]	chr1	23819	1	CDS	CDS:EXON_MRNA:INTRON	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2:ENST00000371870.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.36247	2.492965	2.62346	0.0462889	0.00164881	0.176878	0.0163523
chr9	109090999	109091077	10788496	0	-	0.423077	(0.42,0.455]	chr9	816883	2	CDS	CDS:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	27	2	2.36247	2.492965	2.62346	0.0462889	0.00164881	0.176878	0.0163523
chr8	90020982	90021056	9473351	0	+	0.364865	(0.36,0.39]	chr8	720739	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DECR1	ENSG00000104325.7	ENST00000519328.5:ENST00000517314.5:ENST00000521603.5:ENST00000523447.5:ENST00000517597.5:ENST00000519410.5:ENST00000220764.7:ENST00000522161.5:ENST00000519007.5:ENST00000517761.5:ENST00000520227.1:ENST00000524326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	30	2	1.81435	2.4929	3.17145	0.0302191	3.99865e-4	0.129773	0.0054764
chr1	203309011	203309110	668398	0	+	0.50505	(0.49,0.53]	chr1	67323	17	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BTG2	ENSG00000159388.6	ENST00000475157.1:ENST00000290551.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	33	2	2.38683	2.49282	2.59881	0.012654	0.00184545	0.0718207	0.0178046
chr3	73065722	73065821	3556705	0	+	0.262626	[0,0.29]	chr3	309059	1	UTR3	UTR3:EXON_MRNA	PPP4R2	ENSG00000163605.15	ENST00000356692.10	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.15488	2.4926399999999997	2.8304	0.0436536	0.0121878	0.170594	0.0701019
chr7	38230295	38230388	8235008	0	+	0.27957	[0,0.29]	chr7	627877	5	UTR3	UTR3:EXON_MRNA	STARD3NL	ENSG00000010270.14	ENST00000009041.12:ENST00000434197.5:ENST00000471550.1:ENST00000396013.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	13	2	2.15488	2.4926399999999997	2.8304	0.0436536	0.0121878	0.170594	0.0701019
chr21	8392642	8392741	18041456	0	+	0.535354	(0.53,0.59]	chr21	1530861	38	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1101	6969	2	2.14452	2.4926	2.84068	6.19382e-6	1.03936e-8	2.02873e-4	8.02243e-7
chr11	66277106	66277202	11989575	0	+	0.604167	(0.59,1]	chr11	921606	10	UTR3	UTR3:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	2.08709	2.49246	2.89783	0.00890645	0.00198798	0.0565003	0.0195488
chr1	29119654	29119752	121646	0	+	0.581633	(0.53,0.59]	chr1	14751	30	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	51	2	2.0427	2.491975	2.94125	0.00395612	0.0012261800000000001	0.0316979	0.0135648
chr20	50893444	50893541	18006317	0	-	0.515464	(0.49,0.53]	chr20	1526243	21	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	8	51	2	2.10817	2.4919000000000002	2.87563	0.00798134	1.52968e-4	0.0527008	0.00254995
chr1	156643715	156643813	1316239	0	-	0.469388	(0.455,0.49]	chr1	133856	22	EXON_LNCRNA	EXON_LNCRNA	RP11-284F21.10	ENSG00000272405.1	ENST00000605886.1	lncRNA	lncRNA	lncRNA	lncRNA	7	40	2	2.29155	2.49162	2.69169	0.00354718	0.00126948	0.0291792	0.0139061
chr19	38724156	38724247	17323699	0	+	0.659341	(0.59,1]	chr19	1434347	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	5	62	2	2.47837	2.491555	2.50474	0.00970721	0.0032572	0.0608296	0.02728
chr19	1390870	1390960	17192910	0	+	0.622222	(0.59,1]	chr19	1412102	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS7	ENSG00000115286.20	ENST00000546283.5:ENST00000545446.5:ENST00000618074.4:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000620479.4:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	49	2	2.29886	2.49139	2.68392	0.0202468	0.00759671	0.0984041	0.0505607
chr16	11915452	11915536	15857327	0	-	0.678571	(0.59,1]	chr16	1266932	2	CDS	CDS:EXON_MRNA:INTRON	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000420576.6	protein_coding	protein_coding	protein_coding	protein_coding	2	29	2	2.28778	2.491275	2.69477	0.0556537	0.020208	0.191528	0.0978331
chr15	44561440	44561538	14899893	0	+	0.357143	(0.33,0.36]	chr15	1171685	4	UTR3	UTR3:EXON_MRNA	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5:ENST00000558353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	51	2	1.69073	2.49107	3.29141	0.00653525	5.86683e-5	0.0456362	0.00129243
chr7	135977028	135977100	9086054	0	-	0.5	(0.49,0.53]	chr7	693665	1	CDS_START	CDS_START:CDS:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	7	44	2	2.02795	2.4909	2.95385	0.0110299	2.87717e-4	0.0652374	0.00423277
chr2	121337874	121337974	2860447	0	-	0.34	(0.33,0.36]	chr2	255378	2	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.33322	2.490865	2.64851	0.00492353	0.00451613	0.0366648	0.0350603
chr12	12721107	12721207	12739869	0	+	0.31	(0.29,0.33]	chr12	990326	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDKN1B	ENSG00000111276.12	ENST00000684771.1:ENST00000682620.1:ENST00000477087.1:ENST00000228872.9:ENST00000614874.2:ENST00000396340.1:ENST00000442489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	2.06067	2.49066	2.92065	0.0384863	0.0117842	0.149227	0.0686664
chr4	76115188	76115276	5475181	0	-	0.306818	(0.29,0.33]	chr4	438872	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUP54	ENSG00000138750.15	ENST00000507257.5:ENST00000508604.5:ENST00000264883.8:ENST00000502850.5:ENST00000508465.5:ENST00000514987.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	2.06067	2.49066	2.92065	0.0384863	0.0117842	0.149227	0.0686664
chr17	42201047	42201146	16546629	0	-	0.464646	(0.455,0.49]	chr17	1357142	20	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	1.62077	2.490635	3.3605	0.0239989	0.00147278	0.110225	0.0157578
chr1	205715599	205715698	1462011	0	-	0.373737	(0.36,0.39]	chr1	147460	29	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	38	166	2	2.27181	2.4905549999999996	2.7093	5.63558e-5	1.08312e-6	0.00113756	4.73402e-5
chr9	124861418	124861486	10853026	0	-	0.617647	(0.59,1]	chr9	822063	1	CDS	CDS:EXON_MRNA	RPL35	ENSG00000136942.15	ENST00000373570.8:ENST00000348462.6:ENST00000487431.1:ENST00000493018.5:ENST00000629845.1:ENST00000495728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	180	2	2.14879	2.49047	2.83215	0.00101994	1.00141e-4	0.0113451	0.00196575
chrX	24057632	24057693	18616477	0	+	0.442623	(0.42,0.455]	chrX	1589792	1	CDS	CDS:EXON_MRNA:INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	67	2	2.26652	2.490105	2.71369	0.00146622	9.10309e-5	0.0157384	0.0016818
chr20	31766618	31766682	17749629	0	+	0.5	(0.49,0.53]	chr20	1498009	2	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.48202	2.489995	2.49797	0.00843736	0.00138956	0.0546021	0.0143689
chr12	54293199	54293290	13343352	0	-	0.549451	(0.53,0.59]	chr12	1049646	9	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	15	103	2	2.11041	2.489935	2.86946	0.00139854	1.79885e-5	0.0150825	4.46935e-4
chr7	36406180	36406277	8230469	0	+	0.515464	(0.49,0.53]	chr7	627455	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANLN	ENSG00000011426.11	ENST00000396068.6:ENST00000265748.7:ENST00000424865.1:ENST00000460598.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.38097	2.48989	2.59881	0.0425419	0.00184545	0.167547	0.0178046
chr16	58708170	58708270	15967625	0	-	0.55	(0.53,0.59]	chr16	1281404	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.85636	2.4898800000000003	3.1234	0.0197135	0.00390623	0.0983378	0.0322851
chr7	99458257	99458326	8947105	0	-	0.652174	(0.59,1]	chr7	683032	2	UTR3	UTR3:EXON_MRNA:INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000491560.1:ENST00000488775.5:ENST00000394186.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	153	2	2.39609	2.4898	2.58351	0.00154869	1.60239e-4	0.0164839	0.00263962
chr10	102109445	102109507	11668508	0	-	0.548387	(0.53,0.59]	chr10	889660	2	CDS	CDS:EXON_MRNA	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	1.92179	2.48977	3.05775	0.0100259	6.94592e-4	0.0623334	0.00846751
chr10	119072971	119073053	11717586	0	-	0.414634	(0.39,0.42]	chr10	893856	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.38186	2.48965	2.59744	0.00601449	0.00572981	0.0434483	0.0417368
chr5	113014275	113014374	6153901	0	+	0.343434	(0.33,0.36]	chr5	480731	9	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	31	2	2.00765	2.48961	2.97157	0.0287001	2.7996e-4	0.128757	0.00413887
chr13	46150935	46151006	14009860	0	-	0.450704	(0.42,0.455]	chr13	1098546	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000469227.5:ENST00000494531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.34191	2.48928	2.63665	0.0159091	0.0048172	0.0854674	0.0365653
chr7	100098577	100098646	8949685	0	-	0.507246	(0.49,0.53]	chr7	683546	1	CDS	CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	60	2	1.6558	2.489	3.3222	0.0129897	2.96558e-5	0.0725705	6.71364e-4
chr10	74240342	74240442	11118579	0	+	0.43	(0.42,0.455]	chr10	846340	154	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.03532	2.488975	2.94263	0.040947	0.00766873	0.163285	0.0503696
chr11	32934935	32935035	11899076	0	+	0.44	(0.42,0.455]	chr11	909001	33	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5:ENST00000524678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.03532	2.488975	2.94263	0.040947	0.00766873	0.163285	0.0503696
chr3	9475821	9475906	3298368	0	+	0.505882	(0.49,0.53]	chr3	289607	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	39	2	2.38683	2.48888	2.59093	0.012654	7.86196e-4	0.0718207	0.00929193
chr3	49375489	49375589	4174237	0	-	0.51	(0.49,0.53]	chr3	350929	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	51	2	2.21702	2.4886	2.76018	0.00959574	1.35342e-4	0.0603269	0.0025037
chr22	21622950	21623048	18303191	0	+	0.44898	(0.42,0.455]	chr22	1554195	14	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.40664	2.488575	2.57051	0.0265466	0.00445101	0.120071	0.0340751
chr1	160289862	160289960	1328665	0	-	0.408163	(0.39,0.42]	chr1	135960	14	UTR3	UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	50	2	2.38186	2.488315	2.59477	0.00601449	1.97342e-4	0.0434483	0.00313008
chr22	20917406	20917494	18299853	0	+	0.647727	(0.59,1]	chr22	1553631	1	UTR5	UTR5:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	70	2	2.08167	2.4882049999999998	2.89474	0.00939499	0.00190546	0.0590912	0.018313
chr3	47587816	47587914	4161759	0	-	0.336735	(0.33,0.36]	chr3	348302	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	52	2	1.6133	2.488185	3.36307	0.0264235	5.62985e-6	0.120071	1.71004e-4
chr3	184365000	184365049	3949547	0	+	0.326531	(0.29,0.33]	chr3	332560	1	CDS_START	CDS_START:CDS:EXON_MRNA	POLR2H	ENSG00000163882.9	ENST00000456318.5:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1:ENST00000488213.5:ENST00000489043.1:ENST00000490958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	2.14085	2.48808	2.83531	0.0117968	0.00228447	0.0686664	0.0209856
chr8	41653315	41653411	9806253	0	-	0.3125	(0.29,0.33]	chr8	741510	2	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.14085	2.48808	2.83531	0.0117968	0.00228447	0.0686664	0.0209856
chr14	49586049	49586127	14613985	0	-	0.487179	(0.455,0.49]	chr14	1144057	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS29	ENSG00000213741.11	ENST00000396020.7:ENST00000556230.2:ENST00000245458.11:ENST00000557111.5:ENST00000557367.2:ENST00000554075.2:ENST00000557519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.40664	2.48801	2.56938	0.0123662	0.00635313	0.0705839	0.0449666
chr6	53269112	53269169	7740173	0	-	0.438596	(0.42,0.455]	chr6	594338	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	1.99701	2.48779	2.97857	0.0235036	2.50668e-4	0.111072	0.00378275
chr17	7656388	7656487	16106182	0	+	0.515152	(0.49,0.53]	chr17	1297135	6	UTR3	UTR3:EXON_MRNA	ATP1B2	ENSG00000129244.9	ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.41364	2.487735	2.56183	0.0261296	0.0112538	0.118976	0.0665375
chr7	140702959	140703010	8569927	0	+	0.509804	(0.49,0.53]	chr7	654009	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000465506.5:ENST00000247866.9:ENST00000464564.6:ENST00000476181.5:ENST00000464566.5:ENST00000460088.5:ENST00000472695.5:ENST00000476470.5:ENST00000471136.5:ENST00000475276.1:ENST00000479181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	2.41364	2.487735	2.56183	0.0261296	0.0112538	0.118976	0.0665375
chr17	59685660	59685734	16295510	0	+	0.405405	(0.39,0.42]	chr17	1321755	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000472651.5:ENST00000475458.1	protein_coding	protein_coding	protein_coding	protein_coding	17	83	2	2.27511	2.48771	2.70031	2.89143e-4	6.48624e-5	0.0042512	0.00138613
chr2	8858378	8858478	2505729	0	-	0.48	(0.455,0.49]	chr2	226072	58	UTR3	UTR3:EXON_MRNA	MBOAT2	ENSG00000143797.12	ENST00000305997.8:ENST00000471753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.46624	2.48764	2.50904	0.0310515	0.0094145	0.131262	0.0592633
chr4	82844477	82844509	5496685	0	-	0.46875	(0.455,0.49]	chr4	440201	1	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000508479.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.46624	2.48764	2.50904	0.0310515	0.0094145	0.131262	0.0592633
chr22	17729292	17729389	18291169	0	+	0.402062	(0.39,0.42]	chr22	1552152	19	UTR3	UTR3:EXON_MRNA	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000317582.10:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.77926	2.48757	3.19588	0.0429531	0.00321212	0.161091	0.0280721
chr4	119298581	119298679	5619255	0	-	0.367347	(0.36,0.39]	chr4	447755	23	UTR3	UTR3:EXON_MRNA	C4orf3	ENSG00000164096.13	ENST00000399075.6:ENST00000504110.2	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	2.42114	2.48757	2.554	0.00564641	2.5975e-4	0.0422191	0.00389822
chr17	48622511	48622608	16578568	0	-	0.505155	(0.49,0.53]	chr17	1361937	15	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	150	2	2.37062	2.48749	2.60436	8.80916e-5	9.64519e-6	0.00178337	2.68002e-4
chr15	52551134	52551234	15287499	0	-	0.32	(0.29,0.33]	chr15	1206631	42	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	10	41	2	2.33272	2.48736	2.642	0.00296866	3.11949e-4	0.0264052	0.00449966
chr19	11131613	11131709	17230307	0	+	0.583333	(0.53,0.59]	chr19	1419642	2	UTR3	UTR3:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.47	2.487235	2.50447	0.0301162	0.0089333	0.130016	0.0567495
chrX	152701118	152701211	18912167	0	+	0.548387	(0.53,0.59]	chrX	1610467	3	CDS	CDS:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000417212.5:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.47	2.487235	2.50447	0.0301162	0.0089333	0.130016	0.0567495
chr7	107202224	107202323	8455593	0	+	0.383838	(0.36,0.39]	chr7	645927	9	UTR3	UTR3:EXON_MRNA	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.66365	2.487185	3.31072	0.0345996	3.24695e-5	0.143631	7.18962e-4
chr2	86491140	86491207	1927452	0	+	0.358209	(0.33,0.36]	chr2	181680	1	CDS	CDS:UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000491383.5:ENST00000470160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	24	2	1.81447	2.487115	3.15976	0.0171093	0.00437542	0.0903794	0.0340502
chr4	143521511	143521595	5136281	0	+	0.452381	(0.42,0.455]	chr4	415823	2	CDS	CDS:EXON_MRNA	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.16214	2.486945	2.81175	0.00696724	0.00227654	0.0474632	0.0209546
chr1	26780079	26780175	111013	0	+	0.583333	(0.53,0.59]	chr1	13354	12	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	24	2	2.45844	2.48672	2.515	0.0292633	0.00930921	0.129773	0.0587563
chr19	15263419	15263483	17485188	0	-	0.578125	(0.53,0.59]	chr19	1465363	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000602230.1:ENST00000678800.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	24	2	2.45844	2.48672	2.515	0.0292633	0.00930921	0.129773	0.0587563
chr6	133987139	133987239	7412322	0	+	0.36	(0.33,0.36]	chr6	568116	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000237264.9:ENST00000477527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	1.93784	2.48668	3.03552	0.0278501	0.0012034	0.123353	0.0134762
chr14	90766897	90766989	14456148	0	+	0.565217	(0.53,0.59]	chr14	1128657	5	EXON_PSEUDO	EXON_PSEUDO	CTD-3035D6.1	ENSG00000213315.5	ENST00000472287.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	77	2	2.01641	2.486555	2.9567	0.0108917	1.80167e-5	0.0645168	4.47539e-4
chr4	24576329	24576416	5359200	0	-	0.436782	(0.42,0.455]	chr4	429884	2	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	9	50	2	2.4279	2.4865000000000004	2.5451	0.00112955	9.43793e-4	0.0128875	0.0106637
chr16	23682063	23682157	15595258	0	+	0.425532	(0.42,0.455]	chr16	1236721	1	CDS_START	CDS_START:CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000567897.6:ENST00000568568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	46	2	2.19674	2.485415	2.77409	0.0254904	1.22763e-4	0.117089	0.00213274
chr10	75211095	75211158	11126402	0	+	0.650794	(0.59,1]	chr10	846622	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	61	2	2.19905	2.4850700000000003	2.77109	0.0105866	0.00331425	0.0644466	0.0285314
chr11	47839916	47839990	12389990	0	-	0.486486	(0.455,0.49]	chr11	957565	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5:ENST00000526870.1:ENST00000529863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	2.0008	2.4850250000000003	2.96925	0.0129467	0.00698725	0.0724783	0.0473262
chr3	48604650	48604715	4168765	0	-	0.569231	(0.53,0.59]	chr3	349605	1	CDS	CDS:UTR3:EXON_MRNA	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000472438.5:ENST00000412343.5:ENST00000467690.5:ENST00000463708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	2.0404	2.48501	2.92962	0.0362529	0.0012954	0.148525	0.0136936
chr1	45614292	45614366	175141	0	+	0.432432	(0.42,0.455]	chr1	22748	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	54	2	1.99142	2.484995	2.97857	0.00293113	2.50668e-4	0.0260981	0.00378275
chr10	110285482	110285581	11250198	0	+	0.343434	(0.33,0.36]	chr10	857033	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MXI1	ENSG00000119950.21	ENST00000332674.9:ENST00000361248.8:ENST00000239007.11:ENST00000651225.1:ENST00000652649.1:ENST00000651613.1:ENST00000652243.1:ENST00000651495.1:ENST00000652506.1:ENST00000650900.1:ENST00000651811.1:ENST00000651167.1:ENST00000651467.1:ENST00000651004.1:ENST00000650843.1:ENST00000651318.1:ENST00000650644.1:ENST00000650696.1:ENST00000652604.1:ENST00000652463.1:ENST00000650810.1:ENST00000652028.1:ENST00000651866.1:ENST00000651848.1:ENST00000652323.1:ENST00000651112.1:ENST00000485566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	30	2	2.05605	2.4849449999999997	2.91384	0.0063694	0.0021527	0.0449937	0.0208395
chr1	9730012	9730111	854608	0	-	0.282828	[0,0.29]	chr1	86233	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4:ENST00000435891.5:ENST00000477264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	26	2	2.40395	2.4849300000000003	2.56591	0.0210081	0.00106789	0.101116	0.0118238
chr9	133362312	133362408	10880434	0	-	0.302083	(0.29,0.33]	chr9	825839	10	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	2.11314	2.48485	2.85656	0.00327704	9.79425e-4	0.0274403	0.0116574
chr1	45568484	45568584	174794	0	+	0.53	(0.49,0.53]	chr1	22659	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000351829.9:ENST00000476957.5:ENST00000497973.5:ENST00000473038.5:ENST00000495913.5:ENST00000487654.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	37	2	1.75643	2.4848	3.21317	0.0293825	3.08783e-4	0.129773	0.00445935
chrX	65741057	65741154	18716376	0	+	0.525773	(0.49,0.53]	chrX	1596885	13	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	19	117	2	2.05219	2.48473	2.91727	0.00146451	2.6784e-6	0.0157265	9.19863e-5
chr5	95794128	95794225	6108497	0	+	0.381443	(0.36,0.39]	chr5	478272	2	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000503737.1:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	12	48	2	1.86435	2.484705	3.10506	0.00321418	7.38785e-4	0.0269353	0.00924579
chr19	58549736	58549798	17413354	0	+	0.629032	(0.59,1]	chr19	1451214	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595974.5:ENST00000600840.1:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	7	78	2	1.74696	2.48468	3.2224	0.0204559	4.73062e-4	0.0992616	0.00668763
chr7	135662495	135662579	8553364	0	+	0.75	(0.59,1]	chr7	652923	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000515197.2:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	51	2	2.30623	2.484485	2.66274	0.0170607	0.00482151	0.0896731	0.0365653
chr2	200920992	200921065	3120401	0	-	0.39726	(0.39,0.42]	chr2	275418	1	CDS	CDS:EXON_MRNA	ORC2	ENSG00000115942.9	ENST00000234296.7:ENST00000464147.1:ENST00000487853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.2627100000000002	2.48431	2.70591	0.0192666	0.0185716	0.0966228	0.0932453
chr20	43461063	43461162	17792083	0	+	0.40404	(0.39,0.42]	chr20	1503885	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SRSF6:RP1-138B7.8	ENSG00000124193.16:ENSG00000288000.1	ENST00000662078.1:ENST00000668808.1:ENST00000670741.1:ENST00000244020.5:ENST00000483871.6:ENST00000657241.1:ENST00000671022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	2.2627100000000002	2.48431	2.70591	0.0192666	0.0185716	0.0966228	0.0932453
chr8	123369956	123370024	10057388	0	-	0.397059	(0.39,0.42]	chr8	756702	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.2627100000000002	2.48431	2.70591	0.0192666	0.0185716	0.0966228	0.0932453
chr2	15628444	15628517	1650981	0	+	0.39726	(0.39,0.42]	chr2	162971	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	1.87119	2.4842750000000002	3.09736	0.0373134	5.79886e-4	0.152293	0.00734771
chr7	73296946	73297046	8331807	0	+	0.59	(0.53,0.59]	chr7	634444	3	EXON_PSEUDO	EXON_PSEUDO	POM121B	ENSG00000205578.6	ENST00000380760.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	28	2	2.0693	2.48423	2.89916	0.0160468	0.00890406	0.0860154	0.0565003
chr1	205790654	205790751	1462470	0	-	0.484536	(0.455,0.49]	chr1	147533	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.27492	2.48418	2.69344	0.0193827	0.0176068	0.0943643	0.0925619
chr2	74003266	74003366	1890188	0	+	0.59	(0.53,0.59]	chr2	179068	1	SS5_PROX	SS5_PROX:INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	24	174	2	1.72395	2.48414	3.24433	0.00382982	1.34687e-7	0.0319735	7.23809e-6
chr16	28842974	28843074	15907755	0	-	0.54	(0.53,0.59]	chr16	1273882	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000569217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	1.97928	2.484045	2.98881	0.0218546	2.35204e-4	0.104785	0.00356397
chr1	19187440	19187540	876848	0	-	0.47	(0.455,0.49]	chr1	90364	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.12994	2.48393	2.83792	0.0304832	0.0110512	0.130204	0.0665375
chr19	58597725	58597816	17643746	0	-	0.472527	(0.455,0.49]	chr19	1491215	7	EXON_LNCRNA	EXON_LNCRNA	AC016629.3	ENSG00000269600.2	ENST00000596029.2:ENST00000596427.1	lncRNA	lncRNA	lncRNA	lncRNA	3	19	2	2.12994	2.48393	2.83792	0.0304832	0.0110512	0.130204	0.0665375
chr2	26282844	26282924	1686350	0	+	0.475	(0.455,0.49]	chr2	164860	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HADHB	ENSG00000138029.14	ENST00000537713.5:ENST00000405867.7:ENST00000317799.10:ENST00000494615.1:ENST00000545822.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.12994	2.48393	2.83792	0.0304832	0.0110512	0.130204	0.0665375
chr4	82357312	82357378	5493501	0	-	0.318182	(0.29,0.33]	chr4	439976	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000508119.5:ENST00000513584.1:ENST00000509263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	37	2	2.01933	2.483885	2.94844	0.0025696	0.00217122	0.0229363	0.0208941
chr3	150584006	150584102	3807969	0	+	0.197917	[0,0.29]	chr3	325052	2	UTR3	UTR3:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000477551.5:ENST00000465535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	36	2	2.16074	2.4838750000000003	2.80701	0.0222978	1.14345e-4	0.105845	0.00202843
chr17	82084233	82084308	16710735	0	-	0.626667	(0.59,1]	chr17	1378178	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	5	61	2	2.11642	2.4838250000000004	2.85123	0.0144884	0.0022846	0.0790431	0.0209856
chr1	207768307	207768404	689953	0	+	0.360825	(0.36,0.39]	chr1	70087	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1:ENST00000636114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	54	2	1.88565	2.4837800000000003	3.08191	0.0059682	4.1566e-5	0.0431692	8.8376e-4
chr19	40613403	40613466	17330361	0	+	0.603175	(0.59,1]	chr19	1436011	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000308370.11:ENST00000396819.8:ENST00000243562.13:ENST00000546155.5:ENST00000598055.1:ENST00000601032.5:ENST00000612121.4:ENST00000600499.5:ENST00000610893.4:ENST00000612845.4:ENST00000599724.5:ENST00000597071.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	39	2	2.44587	2.4836850000000004	2.5215	0.032241	0.0105307	0.135671	0.0644466
chr1	1055644	1055739	2455	0	+	0.568421	(0.53,0.59]	chr1	592	8	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN:RP11-54O7.14	ENSG00000188157.15:ENSG00000242590.1	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1:ENST00000418300.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	28	2	1.65775	2.48359	3.30943	0.0573191	0.0018255	0.196623	0.0183913
chr13	33837221	33837314	13682643	0	+	0.387097	(0.36,0.39]	chr13	1078395	11	UTR3	UTR3:EXON_MRNA:INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.336	2.483575	2.63115	0.0245975	0.0154226	0.114841	0.0834369
chr2	175073330	175073428	3027019	0	-	0.377551	(0.36,0.39]	chr2	268001	12	UTR3	UTR3:EXON_MRNA	ATF2	ENSG00000115966.17	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.336	2.483575	2.63115	0.0245975	0.0154226	0.114841	0.0834369
chr21	43968030	43968115	18137486	0	+	0.576471	(0.53,0.59]	chr21	1538525	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000481319.1:ENST00000467358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	28	2	2.05734	2.4835599999999998	2.90978	0.0167029	0.00857883	0.0883198	0.0552386
chr3	12583782	12583873	4040902	0	-	0.582418	(0.53,0.59]	chr3	339179	3	UTR3	UTR3:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.05734	2.4835599999999998	2.90978	0.0167029	0.00857883	0.0883198	0.0552386
chr3	13316716	13316812	4046188	0	-	0.583333	(0.53,0.59]	chr3	339510	6	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	2.05734	2.4835599999999998	2.90978	0.0167029	0.00857883	0.0883198	0.0552386
chr1	198703297	198703372	647934	0	+	0.466667	(0.455,0.49]	chr1	65087	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PTPRC	ENSG00000081237.20	ENST00000367379.6:ENST00000643513.1:ENST00000348564.11:ENST00000530727.5:ENST00000442510.8:ENST00000645247.1:ENST00000462363.6:ENST00000367367.8:ENST00000529828.5:ENST00000427110.6:ENST00000391970.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:processed_transcript	3	21	2	2.30139	2.48351	2.66563	0.0530131	0.0043075	0.195536	0.0334284
chr5	138187313	138187413	6243594	0	+	0.51	(0.49,0.53]	chr5	486391	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000394894.8:ENST00000508792.5	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.13501	2.48346	2.83191	0.0287874	1.99461e-4	0.128869	0.00316009
chr17	78174662	78174758	16693273	0	-	0.71875	(0.59,1]	chr17	1375298	7	UTR3	UTR3:EXON_MRNA	TK1	ENSG00000167900.12	ENST00000301634.12:ENST00000588734.5:ENST00000590862.5	protein_coding	protein_coding	protein_coding	protein_coding	6	70	2	2.24047	2.4833600000000002	2.72625	0.00487097	0.00394493	0.0366486	0.0322851
chr3	47851931	47852026	4163755	0	-	0.452632	(0.42,0.455]	chr3	348488	14	UTR3	UTR3:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	1.86513	2.48332	3.10151	0.0357107	3.57711e-5	0.147298	7.83224e-4
chr10	68341241	68341309	11089755	0	+	0.382353	(0.36,0.39]	chr10	842849	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	51	2	1.76426	2.48328	3.2023	0.0178361	1.80229e-5	0.0918323	4.47567e-4
chr3	196069511	196069568	4663356	0	-	0.315789	(0.29,0.33]	chr3	385619	2	CDS	CDS:EXON_MRNA	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000491658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	50	184	2	2.43326	2.48326	2.53326	7.95603e-6	2.85379e-6	2.49257e-4	9.65561e-5
chr19	48615872	48615946	17602795	0	-	0.648649	(0.59,1]	chr19	1482900	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000549533.1:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	28	323	2	2.32083	2.483085	2.64534	3.15059e-4	2.05766e-5	0.00486272	4.98113e-4
chr1	6545480	6545580	845245	0	-	0.41	(0.39,0.42]	chr1	85352	3	SS3_PROX	SS3_PROX:INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.01677	2.48297	2.94917	0.0235818	0.00121791	0.111323	0.0130188
chr12	111552279	111552354	13540867	0	-	0.333333	(0.33,0.36]	chr12	1065364	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	18	2	1.80608	2.48292	3.15976	0.0416784	0.00437542	0.157445	0.0340502
chr11	18400848	18400906	11831487	0	+	0.551724	(0.53,0.59]	chr11	906008	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LDHA	ENSG00000134333.14	ENST00000543445.5:ENST00000396222.6:ENST00000430553.6:ENST00000545467.5:ENST00000422447.8:ENST00000545215.5:ENST00000541097.5:ENST00000536528.5:ENST00000543695.5:ENST00000539814.5:ENST00000227157.8:ENST00000478970.6:ENST00000495052.5:ENST00000540430.5:ENST00000379412.9:ENST00000542179.1:ENST00000486690.6:ENST00000625635.1:ENST00000537296.5:ENST00000460405.5:ENST00000375710.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	52	333	2	2.02259	2.482885	2.94318	1.31119e-4	1.79041e-7	0.00226303	1.04199e-5
chr22	17728510	17728608	18291161	0	+	0.408163	(0.39,0.42]	chr22	1552152	11	UTR3	UTR3:EXON_MRNA	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	2.18155	2.482775	2.784	0.0283931	0.00261393	0.127654	0.0230705
chr6	10755141	10755194	7048707	0	+	0.396226	(0.39,0.42]	chr6	539793	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000475942.5:ENST00000461342.5:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5:ENST00000478732.1:ENST00000486421.1:ENST00000467229.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	24	2	2.18155	2.482775	2.784	0.0283931	0.00261393	0.127654	0.0230705
chr6	31636732	31636803	7115923	0	+	0.591549	(0.59,1]	chr6	545905	1	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000487839.1:ENST00000492691.5:ENST00000462617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	85	2	1.98883	2.48268	2.97653	0.00592324	0.00142722	0.042792	0.0153442
chr16	85673430	85673529	15798087	0	+	0.353535	(0.33,0.36]	chr16	1257094	10	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	83	2	1.95073	2.4826449999999998	3.01456	0.00131114	5.47851e-6	0.0143177	1.66872e-4
chr9	136866258	136866308	10892385	0	-	0.74	(0.59,1]	chr9	828008	1	UTR5	UTR5:EXON_MRNA	EDF1	ENSG00000107223.13	ENST00000224073.6:ENST00000371649.5:ENST00000371648.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.04362	2.482295	2.92097	0.036186	0.0102634	0.145024	0.0628742
chr15	72202453	72202536	15368021	0	-	0.626506	(0.59,1]	chr15	1214131	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000564440.5:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000563986.1:ENST00000569857.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	156	2	1.99884	2.482205	2.96557	0.00281318	7.26841e-5	0.0251249	0.00139422
chr21	45505900	45505966	18145882	0	+	0.636364	(0.59,1]	chr21	1539841	2	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1	protein_coding	protein_coding	protein_coding	protein_coding	6	80	2	2.11074	2.4821400000000002	2.85354	0.0305	2.78748e-4	0.130204	0.00412391
chr5	10403473	10403541	5875214	0	+	0.426471	(0.42,0.455]	chr5	461983	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	64	2	1.98051	2.48204	2.98357	0.00383646	3.24557e-5	0.0310411	7.95671e-4
chr11	5342685	5342777	12241520	0	-	0.380435	(0.36,0.39]	chr11	946162	1	CDS	CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	81	2	1.91484	2.48193	3.04902	0.00697505	2.23462e-6	0.0474916	7.86937e-5
chr22	20951210	20951308	18300195	0	+	0.489796	(0.455,0.49]	chr22	1553647	15	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	85	2	2.30304	2.4810350000000003	2.65903	0.00116102	2.91942e-5	0.0130851	6.64016e-4
chrX	3852633	3852733	18932305	0	-	0.36	(0.33,0.36]	chrX	1613471	19	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000657698.1	lncRNA	lncRNA	lncRNA	lncRNA	7	24	2	1.70359	2.480895	3.2582	0.0245566	0.00230915	0.114841	0.0211205
chr6	7881803	7881898	7587973	0	-	0.494737	(0.49,0.53]	chr6	578854	4	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	65	2	2.46846	2.480715	2.49297	6.69943e-4	4.21053e-4	0.0087033	0.00571742
chr12	64448530	64448630	12922126	0	+	0.33	(0.29,0.33]	chr12	1007119	5	UTR3	UTR3:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	11	51	2	1.75944	2.48046	3.20148	0.0226161	6.52899e-6	0.107244	1.94116e-4
chr12	56113272	56113369	12898098	0	+	0.340206	(0.33,0.36]	chr12	1004172	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11	protein_coding	protein_coding	protein_coding	protein_coding	16	67	2	2.25791	2.480365	2.70282	6.69776e-4	5.66153e-5	0.0087033	0.00114182
chr16	29663728	29663828	15626146	0	+	0.62	(0.59,1]	chr16	1239194	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000436527.5:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	39	2	2.36593	2.48027	2.59461	0.0259455	0.0141097	0.117079	0.077233
chr1	50926179	50926279	1012841	0	-	0.35	(0.33,0.36]	chr1	104807	678	INTRON	INTRON	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	2.09934	2.480035	2.86073	0.0120497	0.0105608	0.0694419	0.0644466
chr1	182385823	182385887	1401237	0	-	0.546875	(0.53,0.59]	chr1	141696	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000461447.1:ENST00000484996.5:ENST00000489818.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	73	2	1.93933	2.4798999999999998	3.02047	0.00455262	6.25942e-5	0.0352819	0.00124286
chr17	47682888	47682985	16251992	0	+	0.484536	(0.455,0.49]	chr17	1316763	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	72	2	2.35464	2.4798799999999996	2.60512	8.71378e-4	1.06212e-4	0.0106963	0.00189999
chr16	88726546	88726643	16074536	0	-	0.587629	(0.53,0.59]	chr16	1291690	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	2.38191	2.479255	2.5766	0.00477439	8.34608e-4	0.0368489	0.00978328
chr11	47469912	47470012	12386807	0	-	0.6	(0.59,1]	chr11	956932	41	UTR3	UTR3:EXON_MRNA:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.96394	2.4791600000000003	2.99438	0.0453144	0.00776449	0.174798	0.050813
chr14	99458363	99458449	14786165	0	-	0.44186	(0.42,0.455]	chr14	1158506	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000453764.5:ENST00000329331.7:ENST00000630307.2:ENST00000436070.6:ENST00000357563.4:ENST00000453938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	2.20599	2.479145	2.7523	0.0227797	0.0153283	0.105293	0.0828908
chr18	2610809	2610861	16726405	0	+	0.442308	(0.42,0.455]	chr18	1379655	2	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000574096.1	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.20599	2.479145	2.7523	0.0227797	0.0153283	0.105293	0.0828908
chr20	62294055	62294153	17861255	0	+	0.438776	(0.42,0.455]	chr20	1509978	2	UTR3	UTR3:EXON_MRNA	OSBPL2	ENSG00000130703.17	ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000643981.1:ENST00000642714.1:ENST00000471817.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.20599	2.479145	2.7523	0.0227797	0.0153283	0.105293	0.0828908
chr6	36925413	36925512	7135764	0	+	0.454545	(0.42,0.455]	chr6	549805	21	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.20599	2.479145	2.7523	0.0227797	0.0153283	0.105293	0.0828908
chr6	136278411	136278502	7982507	0	-	0.43956	(0.42,0.455]	chr6	610361	7	CDS	CDS:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.20599	2.479145	2.7523	0.0227797	0.0153283	0.105293	0.0828908
chr17	78170885	78170985	16367706	0	+	0.62	(0.59,1]	chr17	1329558	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000591770.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	38	2	2.11074	2.47911	2.84748	0.0305	0.0124539	0.130204	0.0712518
chr1	223774857	223774953	727591	0	+	0.364583	(0.36,0.39]	chr1	73491	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5:ENST00000463997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	39	2	1.89703	2.479085	3.06114	0.0150863	1.59276e-4	0.0821417	0.00263091
chr1	23310453	23310553	894707	0	-	0.43	(0.42,0.455]	chr1	92819	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	37	2	2.34191	2.4789950000000003	2.61608	0.0159091	6.89843e-4	0.0854674	0.00842607
chr13	98019732	98019809	13859258	0	+	0.376623	(0.36,0.39]	chr13	1086734	3	CDS	CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5:ENST00000468620.1:ENST00000493122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	1.85874	2.4789700000000003	3.0992	0.0415243	5.86576e-4	0.164804	0.00742331
chr21	32601862	32601962	18216066	0	-	0.38	(0.36,0.39]	chr21	1545780	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	CFAP298-TCP10L:CFAP298	ENSG00000265590.10:ENSG00000159079.19	ENST00000673740.1:ENST00000674122.1:ENST00000674072.1:ENST00000673633.1:ENST00000673979.1:ENST00000673722.1:ENST00000674123.1:ENST00000673984.1:ENST00000674042.1:ENST00000674025.1:ENST00000673879.1:ENST00000673799.1:ENST00000673985.1:ENST00000673900.1:ENST00000673727.1:ENST00000673694.1:ENST00000673072.2:ENST00000673672.1:ENST00000673807.1:ENST00000673945.1:ENST00000553001.2:ENST00000431216.5:ENST00000673870.1:ENST00000431599.1:ENST00000290155.8:ENST00000382549.8:ENST00000440966.5:ENST00000425336.1:ENST00000300260.7:ENST00000483315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	27	2	1.85874	2.4789700000000003	3.0992	0.0415243	5.86576e-4	0.164804	0.00742331
chr7	107203222	107203320	8982965	0	-	0.367347	(0.36,0.39]	chr7	687283	20	UTR3	UTR3:EXON_MRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.85874	2.4789700000000003	3.0992	0.0415243	5.86576e-4	0.164804	0.00742331
chr12	93411052	93411140	13472826	0	-	0.340909	(0.33,0.36]	chr12	1059391	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	2.16995	2.4789000000000003	2.78785	0.0124739	0.00115378	0.0713206	0.0130851
chrX	154348690	154348769	19277947	0	-	0.78481	(0.59,1]	chrX	1638235	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	101	2	1.90312	2.47876	3.0544	0.00874827	2.52807e-4	0.0560016	0.00381058
chr5	154818971	154819067	6929601	0	-	0.53125	(0.53,0.59]	chr5	530568	6	UTR3	UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	49	2	2.26097	2.4786599999999996	2.69635	0.00389622	0.00112127	0.0313006	0.0128408
chrY	5338588	5338682	19342308	0	-	0.5	(0.49,0.53]	chrY	1645390	10	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P2	ENSG00000235001.3	ENST00000422633.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	32	2	2.03636	2.47859	2.92082	0.00827037	0.00653228	0.0534766	0.0454205
chr15	83017292	83017389	15416731	0	-	0.463918	(0.455,0.49]	chr15	1219171	10	UTR3	UTR3:EXON_MRNA	BTBD1	ENSG00000064726.10	ENST00000261721.9	protein_coding	protein_coding	protein_coding	protein_coding	17	92	2	2.46664	2.4782450000000003	2.48985	2.72396e-4	6.80416e-5	0.00439014	0.00132115
chr10	68645562	68645658	11090650	0	+	0.427083	(0.42,0.455]	chr10	842885	10	CDS	CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.22933	2.4780949999999997	2.72686	0.0102262	0.00330337	0.062872	0.027613
chr20	44908232	44908332	17799169	0	+	0.39	(0.36,0.39]	chr20	1504696	19	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	2.18868	2.478085	2.76749	0.00436393	0.00287858	0.0340502	0.0247002
chr2	65312125	65312224	2708753	0	-	0.484848	(0.455,0.49]	chr2	241397	14	UTR3	UTR3:EXON_MRNA	SPRED2	ENSG00000198369.10	ENST00000356388.9	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.78554	2.47805	3.17056	0.0178667	4.1243e-4	0.0936098	0.00604953
chr1	228098812	228098912	744041	0	+	0.67	(0.59,1]	chr1	75099	9	UTR3	UTR3:EXON_MRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding	10	125	2	1.57133	2.478025	3.38472	0.0290023	1.34433e-5	0.129773	3.5182e-4
chr22	49963788	49963883	18414503	0	+	0.463158	(0.455,0.49]	chr22	1567879	8	UTR3	UTR3:EXON_MRNA	PIM3	ENSG00000198355.5	ENST00000360612.5	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.86152	2.4779850000000003	3.09445	0.0133542	6.1765e-4	0.0743429	0.00822794
chr15	72218997	72219097	15368200	0	-	0.6	(0.59,1]	chr15	1214174	1	CDS_START	CDS_START:CDS:EXON_MRNA	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000564178.5:ENST00000562997.5:ENST00000567087.5:ENST00000564276.1:ENST00000566809.1:ENST00000569050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	80	2	2.03295	2.477875	2.9228	0.00981698	0.00384188	0.0612992	0.0320512
chr2	15554060	15554138	2530040	0	-	0.461538	(0.455,0.49]	chr2	227569	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.95898	2.47784	2.9967	0.047107	0.00650423	0.172269	0.0454205
chr22	20889326	20889425	18299834	0	+	0.474747	(0.455,0.49]	chr22	1553630	16	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.95898	2.47784	2.9967	0.047107	0.00650423	0.172269	0.0454205
chr16	88721631	88721726	16074472	0	-	0.589474	(0.53,0.59]	chr16	1291649	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.92179	2.4778200000000004	3.03385	0.0100259	1.81515e-4	0.0623334	0.00293332
chr1	93346367	93346460	355959	0	+	0.569892	(0.53,0.59]	chr1	35124	6	UTR5	UTR5:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9:ENST00000370267.1	protein_coding	protein_coding	protein_coding	protein_coding	5	38	2	2.27113	2.477725	2.68432	0.0178853	0.00118971	0.0918323	0.0128045
chr7	42917777	42917835	8791578	0	-	0.362069	(0.36,0.39]	chr7	670204	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	65	2	1.94692	2.477655	3.00839	0.0192083	5.71248e-6	0.0943643	1.73257e-4
chrX	48574483	48574573	18692210	0	+	0.522222	(0.49,0.53]	chrX	1594190	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RBM3	ENSG00000102317.18	ENST00000472897.5:ENST00000376759.8:ENST00000488216.5:ENST00000466764.5:ENST00000490127.5:ENST00000489344.5:ENST00000491240.5:ENST00000485213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	36	2	1.8541	2.4776000000000002	3.1011	0.0205565	5.69237e-4	0.0996997	0.00778538
chr10	95238567	95238626	11629782	0	-	0.474576	(0.455,0.49]	chr10	885728	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000492511.1:ENST00000477757.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.10347	2.477595	2.85172	0.0313707	0.010864	0.13127	0.0643837
chr3	184306422	184306495	3949073	0	+	0.479452	(0.455,0.49]	chr3	332338	2	CDS	CDS:EXON_MRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000496925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.10347	2.477595	2.85172	0.0313707	0.010864	0.13127	0.0643837
chr1	179865757	179865854	1394851	0	-	0.474227	(0.455,0.49]	chr1	141318	7	UTR5	UTR5:EXON_MRNA:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.30139	2.477455	2.65352	0.0530131	0.00143499	0.195536	0.0147046
chr2	135866645	135866728	2898182	0	-	0.481928	(0.455,0.49]	chr2	258552	2	CDS	CDS:EXON_MRNA	MCM6	ENSG00000076003.5	ENST00000264156.3	protein_coding	protein_coding	protein_coding	protein_coding	8	44	2	2.19092	2.477455	2.76399	0.00318608	8.75629e-4	0.0267172	0.0106963
chr18	80139001	80139097	16969685	0	+	0.34375	(0.33,0.36]	chr18	1395619	3	UTR3	UTR3:EXON_MRNA:INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.97842	2.47724	2.97606	0.0469469	0.00871774	0.171977	0.0558165
chr2	85321972	85322071	2770130	0	-	0.353535	(0.33,0.36]	chr2	245643	41	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.97842	2.47724	2.97606	0.0469469	0.00871774	0.171977	0.0558165
chr2	127257347	127257447	2865240	0	-	0.34	(0.33,0.36]	chr2	255962	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ERCC3	ENSG00000163161.14	ENST00000426778.5:ENST00000285398.7:ENST00000646042.1:ENST00000647169.1:ENST00000445889.5:ENST00000647496.1:ENST00000491292.5:ENST00000646654.1:ENST00000645233.1:ENST00000645736.1:ENST00000645467.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	1.97842	2.47724	2.97606	0.0469469	0.00871774	0.171977	0.0558165
chr4	78930169	78930243	5482322	0	-	0.337838	(0.33,0.36]	chr4	439473	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PAQR3	ENSG00000163291.14	ENST00000342820.10:ENST00000512760.5:ENST00000511594.5:ENST00000512733.5:ENST00000395594.2:ENST00000515853.5:ENST00000512299.5:ENST00000505735.1:ENST00000508599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	1.97842	2.47724	2.97606	0.0469469	0.00871774	0.171977	0.0558165
chr7	141739123	141739166	8575546	0	+	0.325581	(0.29,0.33]	chr7	654281	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000496622.1:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000461433.1:ENST00000465167.1:ENST00000468267.1:ENST00000484178.5:ENST00000473783.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	16	2	2.17855	2.4772	2.77585	0.0183673	0.0143131	0.0928041	0.0780602
chr2	135661269	135661331	2082311	0	+	0.564516	(0.53,0.59]	chr2	195346	1	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.94437	2.477135	3.0099	0.0143432	0.00600486	0.0783202	0.042887
chr10	5766493	5766565	11352461	0	-	0.458333	(0.455,0.49]	chr10	865738	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	1.79605	2.4770849999999998	3.15812	0.0427708	8.56318e-5	0.168094	0.00160672
chr2	10129386	10129482	1629048	0	+	0.375	(0.36,0.39]	chr2	161739	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	2.16717	2.47688	2.78659	0.0152504	0.0132982	0.0828908	0.0740932
chr14	75133712	75133810	14709063	0	-	0.387755	(0.36,0.39]	chr14	1152525	24	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.38564	2.47673	2.56782	0.0476159	0.00659672	0.17993	0.0460001
chr22	20889226	20889326	18299833	0	+	0.37	(0.36,0.39]	chr22	1553630	15	UTR3	UTR3:EXON_MRNA	SNAP29	ENSG00000099940.12	ENST00000215730.12	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.38564	2.47673	2.56782	0.0476159	0.00659672	0.17993	0.0460001
chr11	60922361	60922459	11967052	0	+	0.602041	(0.59,1]	chr11	916468	3	UTR3	UTR3:EXON_MRNA	TMEM109	ENSG00000110108.10	ENST00000227525.8:ENST00000536171.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	1.96416	2.47664	2.9891200000000002	0.044741	0.00823979	0.166115	0.0540283
chr16	88805439	88805538	15807282	0	+	0.69697	(0.59,1]	chr16	1258116	1	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9:ENST00000562747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	1.96416	2.47664	2.9891200000000002	0.044741	0.00823979	0.166115	0.0540283
chr10	27539361	27539459	10988556	0	+	0.306122	(0.29,0.33]	chr10	835725	14	UTR3	UTR3:EXON_MRNA:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682181.1:ENST00000682668.1:ENST00000684134.1:ENST00000682777.1:ENST00000684191.1:ENST00000682347.1:ENST00000683030.1:ENST00000683915.1:ENST00000684457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	18	2	2.45373	2.4765449999999998	2.49936	0.0156405	0.00917022	0.084273700000000007	0.0580029
chr11	134152552	134152650	12674886	0	-	0.316327	(0.29,0.33]	chr11	983301	26	UTR3	UTR3:EXON_MRNA:INTRON	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000526787.2:ENST00000534532.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	2.45373	2.4765449999999998	2.49936	0.0156405	0.00917022	0.084273700000000007	0.0580029
chr3	49359624	49359721	4174067	0	-	0.340206	(0.33,0.36]	chr3	350894	6	UTR3	UTR3:EXON_MRNA	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1	protein_coding	protein_coding	protein_coding	protein_coding	13	49	2	1.51299	2.47653	3.44007	0.0220425	1.36013e-5	0.105595	3.54469e-4
chr5	171387863	171387948	6384184	0	+	0.6	(0.59,1]	chr5	495786	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000523339.1:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	317	2	2.38267	2.4764150000000003	2.57016	1.63996e-4	4.44836e-5	0.00292297	9.33561e-4
chr13	98453072	98453172	14117766	0	-	0.42	(0.39,0.42]	chr13	1105044	80	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	1.91489	2.476415	3.03794	0.0197788	1.79125e-4	0.0960939	0.00289872
chr6	2888665	2888765	7570628	0	-	0.4	(0.39,0.42]	chr6	577661	15	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.11399	2.476395	2.8388	0.014455	6.72604e-4	0.0787564	0.00873144
chr16	33978755	33978838	15640320	0	+	0.542169	(0.53,0.59]	chr16	1242719	1	EXON_PSEUDO	EXON_PSEUDO	RP11-598D12.4	ENSG00000198555.7	ENST00000568600.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	32	2	1.93217	2.476355	3.02054	0.0149802	0.00577011	0.0814081	0.0426551
chr1	182385759	182385823	1401236	0	-	0.609375	(0.59,1]	chr1	141696	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000461447.1:ENST00000484996.5:ENST00000489818.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	101	2	1.91973	2.476	3.03227	0.0167506	1.06161e-4	0.0883702	0.00189927
chr17	1659920	1660001	16401368	0	-	0.419753	(0.39,0.42]	chr17	1334870	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573681.1:ENST00000573725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	2.46573	2.475645	2.48556	0.00384158	0.00349672	0.0320512	0.0288123
chr18	209970	210031	16716188	0	+	0.377049	(0.36,0.39]	chr18	1379151	1	CDS	CDS:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	2.46176	2.4754899999999997	2.48922	0.0110399	0.00365867	0.0652374	0.0299719
chr12	69598341	69598421	12943544	0	+	0.5625	(0.53,0.59]	chr12	1009011	1	CDS	CDS:UTR3:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	70	2	1.79717	2.47515	3.15313	0.0116438	2.62198e-5	0.0686664	6.06365e-4
chr5	87408115	87408186	6681524	0	-	0.408451	(0.39,0.42]	chr5	515389	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	CCNH	ENSG00000134480.16	ENST00000645953.1:ENST00000505587.5:ENST00000508855.5:ENST00000256897.9:ENST00000504878.1:ENST00000504115.1:ENST00000513499.5:ENST00000510020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	21	2	1.89968	2.47499	3.0503	0.0298458	0.00570576	0.130016	0.0424438
chrX	75384441	75384538	18744498	0	+	0.402062	(0.39,0.42]	chrX	1599537	2	EXON_PSEUDO	EXON_PSEUDO	RPL21P134	ENSG00000233254.1	ENST00000453468.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	21	2	1.89968	2.47499	3.0503	0.0298458	0.00570576	0.130016	0.0424438
chr11	68033110	68033197	11997655	0	+	0.655172	(0.59,1]	chr11	923386	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA:INTRON	NDUFS8:MIR7113	ENSG00000110717.13:ENSG00000284293.1	ENST00000432321.6:ENST00000453471.6:ENST00000313468.10:ENST00000526446.5:ENST00000528492.1:ENST00000532399.1:ENST00000526339.5:ENST00000531228.1:ENST00000525419.5:ENST00000525628.1:ENST00000529645.1:ENST00000621222.1:ENST00000524810.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	6	58	2	1.66121	2.47491	3.28861	0.0272831	0.0028753	0.120977	0.0256141
chr20	482860	482960	17871442	0	-	0.53	(0.49,0.53]	chr20	1511949	42	UTR3	UTR3:EXON_MRNA:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	46	2	2.11783	2.47487	2.83191	0.0142725	1.99461e-4	0.0780078	0.00316009
chr12	31981643	31981741	12816022	0	+	0.316327	(0.29,0.33]	chr12	995186	7	CDS	CDS:EXON_MRNA:INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	25	2	1.89143	2.474805	3.05818	0.0332921	3.19046e-4	0.137922	0.00491578
chrX	48915178	48915278	19063623	0	-	0.6	(0.59,1]	chrX	1620597	1	CDS_START	CDS_START:CDS:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4:ENST00000442430.1	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.9603	2.47471	2.9891200000000002	0.0141758	0.00823979	0.0776158	0.0540283
chr10	73243109	73243206	11570204	0	-	0.556701	(0.53,0.59]	chr10	880648	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DNAJC9	ENSG00000213551.7	ENST00000469143.1:ENST00000453189.2:ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	31	2	2.16037	2.47468	2.78899	0.0254312	0.00245784	0.117089	0.0221765
chr14	94060097	94060183	14775234	0	-	0.534884	(0.53,0.59]	chr14	1157290	1	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	31	2	2.16037	2.47468	2.78899	0.0254312	0.00245784	0.117089	0.0221765
chr21	33550463	33550562	18101161	0	+	0.676768	(0.59,1]	chr21	1534525	11	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	SON:MIR6501	ENSG00000159140.21:ENSG00000284448.1	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000290239.7	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	5	67	2	2.11894	2.474665	2.83039	0.0293157	8.24076e-4	0.128478	0.0102141
chr1	222731356	222731436	724594	0	+	0.4125	(0.39,0.42]	chr1	73173	1	CDS	CDS:EXON_MRNA:INTRON	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.99911	2.4741400000000002	2.94917	0.0477207	0.00121791	0.17993	0.0130188
chr2	110968423	110968522	1993078	0	+	0.414141	(0.39,0.42]	chr2	189148	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	ACOXL:RPL5P9	ENSG00000153093.20:ENSG00000236330.1	ENST00000676595.1:ENST00000439055.6:ENST00000389811.8:ENST00000417074.5:ENST00000433706.5:ENST00000443586.5:ENST00000448118.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	4	25	2	1.99911	2.4741400000000002	2.94917	0.0477207	0.00121791	0.17993	0.0130188
chr11	46780193	46780256	12383872	0	-	0.460317	(0.455,0.49]	chr11	956114	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.70534	2.4741	3.24286	0.0239221	2.77105e-4	0.109927	0.00444204
chr7	12393593	12393685	8683621	0	-	0.467391	(0.455,0.49]	chr7	664071	1	CDS	CDS:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	55	2	2.45892	2.473915	2.48891	8.02402e-4	7.24922e-4	0.00943079	0.00911324
chr1	50326130	50326227	187863	0	+	0.690722	(0.59,1]	chr1	24236	1	EXON_PSEUDO	EXON_PSEUDO	RP11-183G22.1	ENSG00000234080.3	ENST00000423464.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	38	2	2.17889	2.473455	2.76802	0.025085	0.0158525	0.116848	0.0854671
chr6	159693222	159693278	8048344	0	-	0.714286	(0.59,1]	chr6	615211	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5:ENST00000444946.6:ENST00000337404.8:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3:ENST00000452684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	38	2	2.17889	2.473455	2.76802	0.025085	0.0158525	0.116848	0.0854671
chr17	49044026	49044086	16256579	0	+	0.583333	(0.53,0.59]	chr17	1317660	2	CDS	CDS:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.22207	2.4734249999999998	2.72478	0.00910511	0.00324675	0.0576716	0.0282494
chrX	154361482	154361570	19278109	0	-	0.534091	(0.53,0.59]	chrX	1638320	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	36	2	2.22207	2.4734249999999998	2.72478	0.00910511	0.00324675	0.0576716	0.0282494
chr16	51645952	51646052	15663184	0	+	0.53	(0.49,0.53]	chr16	1244823	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000565308.2:ENST00000562726.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	55	2	1.89161	2.4733650000000003	3.05512	0.00594773	1.59562e-4	0.0430241	0.00263091
chr4	144110363	144110460	5696540	0	-	0.298969	(0.29,0.33]	chr4	451524	12	UTR3	UTR3:EXON_MRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.14478	2.473195	2.80161	0.00445138	0.00415667	0.0340751	0.0325842
chr22	16806843	16806941	18421145	0	-	0.234694	[0,0.29]	chr22	1569146	65	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.15488	2.47302	2.79116	0.0436536	0.00287618	0.170594	0.0247002
chr7	42937669	42937763	8253317	0	+	0.276596	[0,0.29]	chr7	628548	2	UTR3	UTR3:EXON_MRNA:INTRON	MRPL32	ENSG00000106591.4	ENST00000223324.3:ENST00000413995.1:ENST00000496564.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	2.15488	2.47302	2.79116	0.0436536	0.00287618	0.170594	0.0247002
chr2	96284433	96284509	2790362	0	-	0.539474	(0.53,0.59]	chr2	248732	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	57	2	2.15051	2.472945	2.79538	0.00631495	2.47731e-4	0.0446309	0.00374232
chr11	112095153	112095244	12136345	0	+	0.384615	(0.36,0.39]	chr11	934907	3	UTR3	UTR3:EXON_MRNA:INTRON	SDHD:AP002884.2	ENSG00000204370.13:ENSG00000255292.9	ENST00000528182.5:ENST00000528021.6:ENST00000375549.8:ENST00000528048.5:ENST00000525291.5:ENST00000526592.5:ENST00000525987.5:ENST00000532699.1:ENST00000531744.5:ENST00000530923.5:ENST00000534010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	2.45656	2.47289	2.48922	0.0110399	0.0100637	0.0652374	0.0624019
chr9	6675365	6675448	10172489	0	+	0.361446	(0.36,0.39]	chr9	766244	2	EXON_PSEUDO	EXON_PSEUDO	RPL35AP20	ENSG00000232946.1	ENST00000427308.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	21	2	2.45656	2.47289	2.48922	0.0110399	0.0100637	0.0652374	0.0624019
chr16	11846768	11846843	15856766	0	-	0.4	(0.39,0.42]	chr16	1266802	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000570767.5:ENST00000572090.5:ENST00000571988.5:ENST00000573791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	2.01677	2.47286	2.92895	0.0235818	3.36969e-4	0.111323	0.00475537
chr5	113018532	113018631	6153944	0	+	0.393939	(0.39,0.42]	chr5	480731	52	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.01677	2.47286	2.92895	0.0235818	3.36969e-4	0.111323	0.00475537
chr21	14500666	14500735	18163954	0	-	0.362319	(0.36,0.39]	chr21	1542446	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	2.32678	2.4724399999999997	2.6181	0.0193538	0.00176908	0.0943643	0.0172426
chr16	1962822	1962909	15823819	0	-	0.609195	(0.59,1]	chr16	1261859	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	136	2	2.11268	2.472415	2.83215	0.00509302	1.00141e-4	0.0376359	0.00196575
chr4	165342227	165342320	5206959	0	+	0.344086	(0.33,0.36]	chr4	420285	4	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.17058	2.47237	2.77416	0.01664	8.34192e-4	0.0878065	0.00978328
chr3	150542673	150542770	4517203	0	-	0.268041	[0,0.29]	chr3	374942	8	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	18	68	2	2.17046	2.4723499999999996	2.77424	0.00168219	1.28667e-5	0.0175167	3.38533e-4
chr3	17160182	17160279	4059122	0	-	0.319588	(0.29,0.33]	chr3	341127	32	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.02337	2.47201	2.92065	0.0217631	0.0117842	0.103469	0.0686664
chr1	27407990	27408089	908783	0	-	0.424242	(0.42,0.455]	chr1	95011	39	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	2.3277	2.47189	2.61608	0.00333145	6.89843e-4	0.0286606	0.00842607
chr11	95832118	95832214	12086584	0	+	0.208333	[0,0.29]	chr11	931528	10	UTR3	UTR3:EXON_MRNA	CEP57	ENSG00000166037.11	ENST00000325486.9:ENST00000325542.10:ENST00000541150.5	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.11932	2.471875	2.82443	0.0332641	0.0180803	0.137922	0.0920398
chr5	171862235	171862333	6978845	0	-	0.285714	[0,0.29]	chr5	533363	8	UTR3	UTR3:EXON_MRNA	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.11932	2.471875	2.82443	0.0332641	0.0180803	0.137922	0.0920398
chr17	39996260	39996338	16222574	0	+	0.538462	(0.53,0.59]	chr17	1311754	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	53	2	2.0693	2.4718400000000003	2.87438	0.0160468	1.55101e-4	0.0860154	0.00258327
chrX	53624594	53624675	19078153	0	-	0.481481	(0.455,0.49]	chrX	1622973	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12:ENST00000489876.1:ENST00000622887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	38	2	1.61715	2.4717599999999997	3.32637	0.0342264	1.64563e-4	0.142155	0.00269001
chr6	31828433	31828529	7116691	0	+	0.697917	(0.59,1]	chr6	546209	5	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	12	137	2	2.29517	2.4715550000000004	2.64794	0.00104749	4.56002e-4	0.0116341	0.00646045
chr11	66643643	66643740	11991533	0	+	0.556701	(0.53,0.59]	chr11	922205	3	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	36	2	2.30988	2.47152	2.63316	0.00643853	0.00474401	0.0452349	0.0361423
chr6	31280316	31280408	7114331	0	+	0.576087	(0.53,0.59]	chr6	545583	1	EXON_PSEUDO	EXON_PSEUDO	RPL3P2	ENSG00000227939.1	ENST00000413027.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	36	2	2.14205	2.471325	2.8006	0.0123179	0.00233666	0.070688	0.0221314
chr4	151100484	151100536	5165554	0	+	0.384615	(0.36,0.39]	chr4	417307	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	42	2	2.35478	2.471215	2.58765	0.00193274	8.39697e-4	0.0192272	0.00981548
chr6	34244884	34244980	7124343	0	+	0.6875	(0.59,1]	chr6	548262	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	404	2	2.27709	2.471135	2.66518	1.77832e-4	1.58984e-5	0.00310649	4.04364e-4
chr7	77627092	77627189	8350212	0	+	0.391753	(0.39,0.42]	chr7	637034	5	CDS	CDS:EXON_MRNA	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000415482.6:ENST00000435495.6:ENST00000407343.3	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.89145	2.470875	3.0503	0.0119663	0.00570576	0.0700178	0.0424438
chr1	226159183	226159270	1531884	0	-	0.494253	(0.49,0.53]	chr1	153291	1	CDS	CDS:EXON_MRNA:INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6:ENST00000464927.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	33	2	2.07447	2.4707850000000002	2.8671	0.0100489	0.0053794	0.0623334	0.0395061
chr2	96185744	96185842	2789818	0	-	0.336735	(0.33,0.36]	chr2	248609	10	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	27	2	2.36984	2.470685	2.57153	0.00564505	0.00330025	0.041184	0.028478
chr6	30724492	30724587	7112223	0	+	0.421053	(0.42,0.455]	chr6	545067	2	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	258	1326	2	2.37602	2.4705399999999997	2.56506	6.88792e-7	1.5044e-7	3.24178e-5	7.97537e-6
chr1	161600292	161600381	501381	0	+	0.539326	(0.53,0.59]	chr1	54335	1	INTRON	INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	lncRNA	lncRNA	lncRNA:polymorphic_pseudogene	lncRNA:processed_transcript	5	37	2	2.37399	2.47032	2.56665	0.0126178	0.00209536	0.0717599	0.0196588
chr19	58544393	58544484	17413280	0	+	0.758242	(0.59,1]	chr19	1451170	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	14	162	2	2.35711	2.47031	2.58351	0.00120176	1.60239e-4	0.0134762	0.00263962
chr17	48841807	48841887	16255487	0	+	0.475	(0.455,0.49]	chr17	1317413	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000510356.5:ENST00000372317.7:ENST00000576582.5:ENST00000511697.1:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	25	2	2.27492	2.470275	2.66563	0.0193827	0.0043075	0.0943643	0.0334284
chr1	171557962	171558052	537271	0	+	0.444444	(0.42,0.455]	chr1	57662	9	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	17	85	2	2.12917	2.4699999999999998	2.81083	4.43251e-4	1.05629e-4	0.00596959	0.00204591
chr15	57286755	57286855	14950142	0	+	0.26	[0,0.29]	chr15	1174949	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560191.1:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	37	2	2.40124	2.46981	2.53838	0.00258406	5.9913e-4	0.0236624	0.0075062
chr19	38729332	38729432	17323762	0	+	0.66	(0.59,1]	chr19	1434383	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000497637.5:ENST00000477174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	123	2	1.96813	2.4698	2.97147	0.00303003	4.2002e-4	0.0257942	0.00611538
chr1	67686024	67686075	265204	0	+	0.588235	(0.53,0.59]	chr1	29638	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000460575.1:ENST00000617962.2:ENST00000484245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.16037	2.4697899999999997	2.77921	0.0254312	0.0132865	0.117089	0.0740932
chr10	102162269	102162363	11226682	0	+	0.553191	(0.53,0.59]	chr10	854877	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	23	2	2.16037	2.4697899999999997	2.77921	0.0254312	0.0132865	0.117089	0.0740932
chr2	231808475	231808575	2426600	0	+	0.59	(0.53,0.59]	chr2	218751	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000461350.5:ENST00000488111.1:ENST00000449174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	23	2	2.0404	2.46978	2.89916	0.0362529	0.00890406	0.148525	0.0565003
chr7	45109075	45109137	8801073	0	-	0.548387	(0.53,0.59]	chr7	671578	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBRG4	ENSG00000136270.14	ENST00000395655.8:ENST00000361278.7:ENST00000258770.8:ENST00000494076.5:ENST00000478532.5:ENST00000461363.1:ENST00000471142.5:ENST00000475893.1:ENST00000482285.1:ENST00000495078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.0404	2.46978	2.89916	0.0362529	0.00890406	0.148525	0.0565003
chr10	119836895	119836962	11719170	0	-	0.492537	(0.49,0.53]	chr10	894162	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCMBP	ENSG00000197771.13	ENST00000360003.7:ENST00000369077.4:ENST00000466047.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	2.21702	2.46977	2.72252	0.0161474	0.00959574	0.0860154	0.0603269
chr22	31619237	31619330	18473616	0	-	0.526882	(0.49,0.53]	chr22	1576720	9	UTR3	UTR3:EXON_MRNA	PISD	ENSG00000241878.11	ENST00000460723.5:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000439502.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.21702	2.46977	2.72252	0.0161474	0.00959574	0.0860154	0.0603269
chr1	206588460	206588558	682405	0	+	0.479592	(0.455,0.49]	chr1	68949	16	UTR3	UTR3:EXON_MRNA	RASSF5	ENSG00000266094.8	ENST00000579436.7:ENST00000581503.6:ENST00000636182.1:ENST00000577571.5:ENST00000581888.1:ENST00000579942.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.40664	2.46975	2.53286	0.0282409	0.0123662	0.124386	0.0705839
chr3	129315536	129315625	4444057	0	-	0.606742	(0.59,1]	chr3	369340	3	CDS	CDS:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	1.63662	2.46966	3.3027	0.0410169	2.94605e-4	0.163285	0.00432147
chr6	149594167	149594260	7481400	0	+	0.548387	(0.53,0.59]	chr6	571726	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPS18P9	ENSG00000220848.5	ENST00000648980.1:ENST00000482817.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	21	148	2	2.08203	2.469645	2.85726	0.00122018	2.51482e-6	0.0135383	8.73098e-5
chr7	76328782	76328881	8863403	0	-	0.434343	(0.42,0.455]	chr7	677476	21	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	11	63	2	1.95091	2.4695650000000002	2.98822	0.00692158	2.95027e-5	0.0472369	6.69242e-4
chr22	21448316	21448414	18302347	0	+	0.622449	(0.59,1]	chr22	1554129	17	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	4	51	2	2.17889	2.469475	2.76006	0.025085	0.00330486	0.116848	0.027613
chr17	8173587	8173674	16432057	0	-	0.448276	(0.42,0.455]	chr17	1340307	1	UTR3	UTR3:EXON_MRNA	TMEM107	ENSG00000179029.15	ENST00000437139.7:ENST00000449985.6	protein_coding	protein_coding	protein_coding	protein_coding	91	468	2	2.24194	2.46935	2.69676	3.66503e-5	5.51786e-8	7.98366e-4	3.70113e-6
chr16	84975750	84975849	16063272	0	-	0.555556	(0.53,0.59]	chr16	1290318	17	UTR3	UTR3:EXON_MRNA	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	23	2	2.0289	2.46934	2.90978	0.0373899	0.00857883	0.146698	0.0552386
chr1	211820565	211820665	1479734	0	-	0.34	(0.33,0.36]	chr1	149308	270	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.07736	2.4690450000000004	2.86073	0.0442037	0.0105608	0.172163	0.0644466
chr2	70277491	70277591	1878777	0	+	0.35	(0.33,0.36]	chr2	177457	2	UTR3	UTR3:EXON_MRNA	PCYOX1	ENSG00000116005.12	ENST00000433351.7:ENST00000264441.9	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.07736	2.4690450000000004	2.86073	0.0442037	0.0105608	0.172163	0.0644466
chr6	31540321	31540419	7661183	0	-	0.55102	(0.53,0.59]	chr6	584717	1	CDS	CDS:UTR3:EXON_MRNA	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1:ENST00000480131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	74	2	2.0728	2.4690399999999997	2.86528	0.0086901	3.38748e-5	0.0559355	8.28988e-4
chr9	93565424	93565522	10363318	0	+	0.285714	[0,0.29]	chr9	780189	10	UTR3	UTR3:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.28104	2.469035	2.65703	0.0202028	0.00320067	0.0984041	0.0280721
chr15	89197403	89197502	15093462	0	+	0.353535	(0.33,0.36]	chr15	1187100	21	UTR3	UTR3:EXON_MRNA	ABHD2	ENSG00000140526.18	ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.96645	2.46901	2.97157	0.0197415	2.7996e-4	0.095966	0.00413887
chr1	120617056	120617156	1257688	0	-	0.47	(0.455,0.49]	chr1	123306	375	INTRON	INTRON	PDE4DIPP2	ENSG00000275131.3	ENST00000612480.2	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	3	19	2	1.96875	2.4690000000000003	2.96925	0.0480352	0.00698725	0.180552	0.0473262
chr12	46187196	46187295	13313420	0	-	0.484848	(0.455,0.49]	chr12	1043464	43	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.96875	2.4690000000000003	2.96925	0.0480352	0.00698725	0.180552	0.0473262
chr7	75070704	75070769	8857705	0	-	0.476923	(0.455,0.49]	chr7	676660	2	CDS	CDS:EXON_MRNA	RCC1L	ENSG00000274523.5	ENST00000614461.4:ENST00000610322.5:ENST00000616051.1:ENST00000618035.4:ENST00000615250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	1.96875	2.4690000000000003	2.96925	0.0480352	0.00698725	0.180552	0.0473262
chr1	1574557	1574633	828194	0	-	0.710526	(0.59,1]	chr1	82542	1	UTR5	UTR5:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	52	2	1.82129	2.46888	3.11647	0.0227814	0.00535979	0.105293	0.0406564
chr21	33558021	33558115	18101240	0	+	0.414894	(0.39,0.42]	chr21	1534538	6	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	1.94226	2.468665	2.99507	0.01151	0.00637824	0.0679423	0.0449937
chr7	135622850	135622925	8553074	0	+	0.48	(0.455,0.49]	chr7	652846	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.08503	2.468375	2.85172	0.0158994	0.010864	0.0856643	0.0643837
chr8	26370313	26370413	9238345	0	+	0.37	(0.36,0.39]	chr8	707538	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000524169.5:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000518215.5:ENST00000665751.1:ENST00000518890.5:ENST00000517754.1:ENST00000518208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	38	2	2.46465	2.468295	2.47194	0.00204665	0.00159698	0.0200766	0.015942
chr14	102019892	102019974	14495551	0	+	0.463415	(0.455,0.49]	chr14	1133139	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	1.92777	2.46824	3.00871	0.0286531	2.11527e-4	0.128685	0.00328766
chr5	37309128	37309197	6540132	0	-	0.333333	(0.33,0.36]	chr5	506556	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP155	ENSG00000113569.16	ENST00000231498.8:ENST00000502533.5:ENST00000381843.6:ENST00000513532.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.28792	2.468215	2.64851	0.0239159	0.00492353	0.112531	0.0366648
chr5	180575586	180575685	6416549	0	+	0.333333	(0.33,0.36]	chr5	499475	15	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.28792	2.468215	2.64851	0.0239159	0.00492353	0.112531	0.0366648
chr5	138172064	138172134	6860764	0	-	0.514286	(0.49,0.53]	chr5	524881	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000411594.6:ENST00000512140.5:ENST00000428808.5:ENST00000432618.5:ENST00000425764.5:ENST00000450756.5:ENST00000515254.1:ENST00000430331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	1.81659	2.467755	3.11892	0.0376859	0.00398244	0.147713	0.0322851
chr7	152177818	152177914	9135338	0	-	0.385417	(0.36,0.39]	chr7	698399	18	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	44	2	1.83042	2.46774	3.10506	0.00477641	7.38785e-4	0.0363804	0.00924579
chr1	207048820	207048919	1465442	0	-	0.343434	(0.33,0.36]	chr1	148274	51	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.16995	2.4677249999999997	2.7655	0.0175892	0.0124739	0.0918323	0.0713206
chr16	84779362	84779455	15791040	0	+	0.333333	(0.33,0.36]	chr16	1256730	4	UTR3	UTR3:EXON_MRNA	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	2.16995	2.4677249999999997	2.7655	0.0175892	0.0124739	0.0918323	0.0713206
chr12	25206233	25206332	13258179	0	-	0.343434	(0.33,0.36]	chr12	1039078	11	UTR3	UTR3:EXON_MRNA	KRAS	ENSG00000133703.13	ENST00000256078.10:ENST00000311936.8	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.4164	2.467635	2.51887	0.0358636	0.011989	0.147298	0.0700473
chr14	75132736	75132834	14709053	0	-	0.357143	(0.33,0.36]	chr14	1152525	14	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.4164	2.467635	2.51887	0.0358636	0.011989	0.147298	0.0700473
chr16	74622565	74622662	16032594	0	-	0.350515	(0.33,0.36]	chr16	1287407	13	UTR3	UTR3:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.4164	2.467635	2.51887	0.0358636	0.011989	0.147298	0.0700473
chr2	86173705	86173762	2773096	0	-	0.350877	(0.33,0.36]	chr2	246378	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4:ENST00000474969.5:ENST00000409258.2:ENST00000486633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.4164	2.467635	2.51887	0.0358636	0.011989	0.147298	0.0700473
chr1	27407396	27407495	908777	0	-	0.515152	(0.49,0.53]	chr1	95011	33	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	16	92	2	2.45675	2.4676	2.47845	4.03082e-4	8.63401e-5	0.00593075	0.00160945
chr5	179729243	179729343	6414466	0	+	0.32	(0.29,0.33]	chr5	499211	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	50	180	2	2.20944	2.4675849999999997	2.72573	2.4144e-5	1.58149e-6	5.66775e-4	6.46312e-5
chr12	110720575	110720668	13539221	0	-	0.301075	(0.29,0.33]	chr12	1065103	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	81	2	2.12561	2.46736	2.80911	4.36138e-4	1.55916e-5	0.00623912	3.97516e-4
chr21	6486137	6486230	18155120	0	-	0.569892	(0.53,0.59]	chr21	1541457	1	CDS	CDS:UTR3:EXON_MRNA	U2AF1L5	ENSG00000275895.7	ENST00000610664.5:ENST00000623375.3:ENST00000637320.1:ENST00000639996.1:ENST00000620065.4:ENST00000636923.1:ENST00000624739.1:ENST00000619610.2:ENST00000636315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	2.38627	2.467355	2.54844	0.00663226	0.00217924	0.0461575	0.0208941
chr5	146113121	146113220	6891032	0	-	0.585859	(0.53,0.59]	chr5	527438	27	UTR3	UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	40	2	2.0404	2.4673350000000003	2.89427	0.0362529	3.98634e-4	0.148525	0.00546791
chr16	21837248	21837346	15889968	0	-	0.591837	(0.59,1]	chr16	1271456	26	CDS	CDS:EXON_MRNA	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.32384	2.46729	2.61074	0.025486	0.0157639	0.117089	0.0851539
chr7	150330404	150330504	8614692	0	+	0.64	(0.59,1]	chr7	657692	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.32384	2.46729	2.61074	0.025486	0.0157639	0.117089	0.0851539
chr1	151051264	151051362	1291617	0	-	0.428571	(0.42,0.455]	chr1	128778	4	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	15	79	2	2.36044	2.467025	2.57361	3.54843e-4	1.30561e-4	0.00538798	0.00225508
chr7	100627263	100627339	8952227	0	-	0.631579	(0.59,1]	chr7	684162	1	CDS	CDS:UTR3:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000490084.5:ENST00000462090.5:ENST00000476304.5:ENST00000461176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	102	2	1.67911	2.467	3.25489	0.0201164	8.68018e-5	0.0976908	0.0016165
chr10	96576699	96576799	11640660	0	-	0.37	(0.36,0.39]	chr10	886636	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1:ENST00000443638.1:ENST00000464654.1:ENST00000475401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	57	2	1.85874	2.4669499999999998	3.07516	0.0415243	6.89731e-6	0.164804	0.00020353099999999999
chr21	5243767	5243833	18154202	0	-	0.575758	(0.53,0.59]	chr21	1541242	2	EXON_LNCRNA	EXON_LNCRNA	RP11-717F1.1	ENSG00000279669.1	ENST00000623753.1	lncRNA	lncRNA	lncRNA	lncRNA	8	54	2	2.03947	2.46687	2.89427	0.00610305	3.98634e-4	0.0439421	0.00546791
chr1	150575769	150575868	1288935	0	-	0.444444	(0.42,0.455]	chr1	128249	17	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	65	2	1.83191	2.46671	3.10151	0.00501386	3.57711e-5	0.0384711	7.83224e-4
chr1	182386255	182386328	1401242	0	-	0.630137	(0.59,1]	chr1	141698	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000475808.5:ENST00000480604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	123	2	2.03295	2.4666449999999998	2.90034	0.00384188	2.17692e-4	0.0320512	0.00336773
chr8	123208460	123208556	9588613	0	+	0.677083	(0.59,1]	chr8	727199	9	UTR3	UTR3:EXON_MRNA:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	5	63	2	2.24397	2.4665850000000002	2.6892	0.0206682	0.00147019	0.0997234	0.0149767
chr11	64244478	64244569	12417232	0	-	0.417582	(0.39,0.42]	chr11	962454	1	UTR3	UTR3:EXON_MRNA	PPP1R14B	ENSG00000173457.11	ENST00000309318.8:ENST00000392210.6:ENST00000542235.1	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	1.79377	2.46652	3.13927	0.0299302	9.67557e-5	0.129773	0.00175376
chr10	7802347	7802425	10916008	0	+	0.512821	(0.49,0.53]	chr10	831346	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	44	2	2.06004	2.46636	2.87268	0.00373365	0.00175078	0.0303255	0.0180053
chr3	96617754	96617850	4316745	0	-	0.375	(0.36,0.39]	chr3	360010	6	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	201	828	2	2.0134	2.466335	2.91927	1.68544e-5	6.15206e-9	4.65665e-4	5.10427e-7
chr15	78548789	78548866	15040594	0	+	0.376623	(0.36,0.39]	chr15	1183234	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMA4	ENSG00000041357.16	ENST00000560217.5:ENST00000559082.5:ENST00000413382.6:ENST00000044462.12:ENST00000559934.5:ENST00000560099.5:ENST00000558281.5:ENST00000559365.5:ENST00000558341.5:ENST00000560737.5:ENST00000558094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	39	2	1.66836	2.46625	3.26414	0.0474647	4.42599e-5	0.17993	9.29425e-4
chr12	54280719	54280807	12891416	0	+	0.579545	(0.53,0.59]	chr12	1002903	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	81	516	2	2.46581	2.466125	2.46644	4.1737e-6	1.82831e-6	1.46393e-4	6.64996e-5
chr1	205715202	205715301	1462007	0	-	0.363636	(0.36,0.39]	chr1	147460	25	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	14	63	2	2.25777	2.466075	2.67438	8.23941e-4	1.20462e-4	0.0102141	0.00210079
chr4	78916168	78916266	4912746	0	+	0.316327	(0.29,0.33]	chr4	404414	43	UTR3	UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000502613.3	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.99403	2.4657	2.93737	0.0202925	0.00826984	0.098158	0.0534766
chr6	31816047	31816143	7116663	0	+	0.572917	(0.53,0.59]	chr6	546204	3	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	22	143	2	2.28295	2.465555	2.64816	1.71221e-4	2.35995e-5	0.0027849	6.15623e-4
chr4	102795751	102795849	5563910	0	-	0.377551	(0.36,0.39]	chr4	444349	15	UTR3	UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.1437	2.4651449999999997	2.78659	0.0340515	0.0132982	0.141465	0.0740932
chr20	1369263	1369359	17875162	0	-	0.333333	(0.33,0.36]	chr20	1512311	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	51	2	1.81756	2.46484	3.11212	0.0223533	1.24422e-5	0.106046	3.29303e-4
chr10	17234755	17234818	10938828	0	+	0.555556	(0.53,0.59]	chr10	833000	2	CDS	CDS:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5:ENST00000421459.2:ENST00000495528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	49	2	2.45052	2.46469	2.47886	0.00355092	0.00138105	0.0300049	0.014307
chr12	115961165	115961265	13554953	0	-	0.47	(0.455,0.49]	chr12	1066994	27	UTR3	UTR3:EXON_MRNA	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000648762.1:ENST00000648379.1:ENST00000650226.1:ENST00000649607.1:ENST00000648737.1:ENST00000649775.1:ENST00000648825.1:ENST00000649937.1:ENST00000548784.2:ENST00000648916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	54	2	1.95018	2.4646850000000002	2.97919	0.0063042	8.43808e-5	0.044701	0.00173269
chr1	50655441	50655528	1010125	0	-	0.482759	(0.455,0.49]	chr1	104766	1	CDS	CDS:EXON_MRNA:INTRON	FAF1	ENSG00000185104.20	ENST00000396153.7:ENST00000371778.5:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	29	2	2.26324	2.464435	2.66563	0.00868189	0.0043075	0.0558093	0.0334284
chr15	65556738	65556811	14979949	0	+	0.465753	(0.455,0.49]	chr15	1177560	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000562832.1	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.26324	2.464435	2.66563	0.00868189	0.0043075	0.0558093	0.0334284
chr2	11182839	11182938	2511602	0	-	0.30303	(0.29,0.33]	chr2	226811	32	UTR3	UTR3:EXON_MRNA	ROCK2	ENSG00000134318.14	ENST00000315872.11:ENST00000616279.4	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	1.61234	2.464435	3.31653	0.0360321	0.00261621	0.145024	0.0238929
chr15	44526357	44526457	14899609	0	+	0.31	(0.29,0.33]	chr15	1171638	23	UTR3	UTR3:EXON_MRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.25579	2.46428	2.67277	0.0255386	0.00934624	0.117089	0.0589275
chr6	7286518	7286617	7586857	0	-	0.323232	(0.29,0.33]	chr6	578692	55	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	2.25579	2.46428	2.67277	0.0255386	0.00934624	0.117089	0.0589275
chr1	32773283	32773382	130807	0	+	0.565657	(0.53,0.59]	chr1	16163	5	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.45844	2.46422	2.47	0.00930921	0.0089333	0.0587563	0.0567495
chr2	27243197	27243292	1691793	0	+	0.547368	(0.53,0.59]	chr2	165809	1	CDS	CDS:EXON_MRNA	CAD	ENSG00000084774.14	ENST00000264705.9:ENST00000403525.5:ENST00000428460.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.45844	2.46422	2.47	0.00930921	0.0089333	0.0587563	0.0567495
chr11	58618100	58618198	11955354	0	+	0.520408	(0.49,0.53]	chr11	914993	5	UTR3	UTR3:EXON_MRNA:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	64	2	2.38717	2.464125	2.54108	6.74369e-4	5.09746e-4	0.00826103	0.00713668
chr1	19339340	19339434	877774	0	-	0.585106	(0.53,0.59]	chr1	90666	7	UTR3	UTR3:EXON_MRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	80	2	2.06659	2.464105	2.86162	0.00244421	7.12934e-5	0.0229472	0.00137329
chr16	28823085	28823172	15620233	0	+	0.827586	(0.59,1]	chr16	1238389	2	UTR5	UTR5:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	10	108	2	1.72077	2.464045	3.20732	0.0137395	1.12583e-4	0.0760883	0.00199971
chr15	90084077	90084171	15437565	0	-	0.446809	(0.42,0.455]	chr15	1221146	12	UTR3	UTR3:EXON_MRNA	IDH2	ENSG00000182054.10	ENST00000330062.8:ENST00000560061.1:ENST00000559482.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.86513	2.46403	3.06293	0.0357107	0.00492128	0.147298	0.0366648
chr11	7987352	7987452	11789411	0	+	0.72	(0.59,1]	chr11	902499	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3F	ENSG00000175390.15	ENST00000533626.5:ENST00000651655.1:ENST00000677121.1:ENST00000678993.1:ENST00000640290.2:ENST00000531572.2:ENST00000531329.6:ENST00000678132.1:ENST00000528653.2:ENST00000677179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	142	2	1.77772	2.463865	3.15001	0.0110472	2.43576e-5	0.0652709	5.7125e-4
chr1	10459402	10459501	856654	0	-	0.383838	(0.36,0.39]	chr1	86469	30	UTR3	UTR3:EXON_MRNA	DFFA	ENSG00000160049.12	ENST00000377038.8	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.38564	2.463845	2.54205	0.0476159	0.00253891	0.17993	0.0227257
chr14	74735727	74735827	14401178	0	+	0.38	(0.36,0.39]	chr14	1125404	9	UTR3	UTR3:EXON_MRNA	FCF1	ENSG00000119616.11	ENST00000341162.8	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.08671	2.4638	2.84089	0.01635	0.0128123	0.0867615	0.0719798
chr7	107372594	107372677	8984676	0	-	0.373494	(0.36,0.39]	chr7	687369	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.08671	2.4638	2.84089	0.01635	0.0128123	0.0867615	0.0719798
chr11	35807477	35807577	11910471	0	+	0.44	(0.42,0.455]	chr11	910190	12	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	9	43	2	1.51711	2.46376	3.41041	0.0297484	1.00299e-4	0.129773	0.00180803
chr16	69699721	69699820	15725356	0	+	0.343434	(0.33,0.36]	chr16	1252140	35	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	2.13965	2.46375	2.78785	0.0297101	0.00115378	0.129986	0.0130851
chr1	112912624	112912722	1232302	0	-	0.357143	(0.33,0.36]	chr1	120455	9	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	10	36	2	1.53987	2.4635800000000003	3.38729	0.0280138	1.20567e-4	0.126417	0.00210079
chrX	141905907	141906006	18883525	0	+	0.515152	(0.49,0.53]	chrX	1608997	6	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	2.11157	2.4632449999999997	2.81492	0.0029074	6.31846e-4	0.0249432	0.00837621
chr18	9954211	9954309	16756132	0	+	0.377551	(0.36,0.39]	chr18	1381801	1	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000340541.4:ENST00000583879.5:ENST00000583475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	83	2	1.84693	2.46318	3.07943	0.00131064	2.05262e-5	0.0137878	5.46789e-4
chr1	201866807	201866883	661399	0	+	0.513158	(0.49,0.53]	chr1	66283	2	CDS	CDS:EXON_MRNA	IPO9	ENSG00000198700.10	ENST00000361565.9	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.92759	2.46304	2.99849	0.0267071	0.00630123	0.118504	0.0445415
chr10	128106843	128106942	11745092	0	-	0.525253	(0.49,0.53]	chr10	896083	44	CDS	CDS:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.92759	2.46304	2.99849	0.0267071	0.00630123	0.118504	0.0445415
chr9	83669184	83669255	10710442	0	-	0.507042	(0.49,0.53]	chr9	810200	1	CDS	CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000526134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	1.92759	2.46304	2.99849	0.0267071	0.00630123	0.118504	0.0445415
chr9	130104419	130104484	10488175	0	+	0.507692	(0.49,0.53]	chr9	791957	1	CDS	CDS:UTR3:EXON_MRNA	GPR107	ENSG00000148358.20	ENST00000372406.5:ENST00000372410.7:ENST00000347136.11:ENST00000493417.5:ENST00000610997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	1.92759	2.46304	2.99849	0.0267071	0.00630123	0.118504	0.0445415
chr9	133367264	133367364	10880495	0	-	0.6	(0.59,1]	chr9	825869	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000467910.5:ENST00000371991.3:ENST00000371982.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	69	2	2.11947	2.46292	2.80637	0.00815168	0.00274489	0.0535952	0.0238522
chr14	101964631	101964691	14494933	0	+	0.683333	(0.59,1]	chr14	1132935	2	UTR5	UTR5:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	28	2	2.42639	2.462895	2.4994	0.0409084	0.0333573	0.163285	0.137922
chr19	10922039	10922133	17228531	0	+	0.670213	(0.59,1]	chr19	1419257	4	UTR3	UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000344150.8:ENST00000586221.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	28	2	2.42639	2.462895	2.4994	0.0409084	0.0333573	0.163285	0.137922
chr5	141516753	141516850	6875040	0	-	0.628866	(0.59,1]	chr5	526351	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000476339.1:ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000448451.6:ENST00000643718.1:ENST00000518047.5:ENST00000468119.3:ENST00000643312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	28	2	2.42639	2.462895	2.4994	0.0409084	0.0333573	0.163285	0.137922
chr1	169387082	169387182	528394	0	+	0.35	(0.33,0.36]	chr1	56756	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BLZF1	ENSG00000117475.14	ENST00000329281.6:ENST00000367808.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.07736	2.462885	2.84841	0.0442037	0.0020676	0.172163	0.0194849
chr6	27838239	27838339	7649623	0	-	0.64	(0.59,1]	chr6	582817	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AC15	ENSG00000275221.2	ENST00000618958.2	protein_coding	protein_coding	protein_coding	protein_coding	5	54	2	2.00297	2.462885	2.9228	0.0125191	0.00981698	0.0713905	0.0612992
chr8	26412642	26412739	9238677	0	+	0.350515	(0.33,0.36]	chr8	707583	24	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.07736	2.462885	2.84841	0.0442037	0.0020676	0.172163	0.0194849
chr20	49946135	49946194	17814574	0	+	0.423729	(0.42,0.455]	chr20	1506953	1	CDS	CDS:UTR3:EXON_MRNA	RNF114	ENSG00000124226.11	ENST00000623528.3:ENST00000622999.3:ENST00000244061.6:ENST00000625177.3:ENST00000623732.3:ENST00000622920.1:ENST00000624666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	2.36247	2.4625500000000002	2.56263	0.0462889	9.19381e-4	0.176878	0.0104432
chr2	27041408	27041503	1690685	0	+	0.536842	(0.53,0.59]	chr2	165370	7	UTR3	UTR3:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000460665.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	99	2	2.44976	2.46243	2.4751	7.16255e-4	9.5325e-5	0.00901405	0.00173748
chr22	23894474	23894574	18309767	0	+	0.67	(0.59,1]	chr22	1555576	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	AP000350.10:MIF	ENSG00000251357.4:ENSG00000240972.2	ENST00000433835.3:ENST00000215754.8:ENST00000465752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	128	2	2.40419	2.46239	2.52059	0.00139249	5.34719e-4	0.0143941	0.00744072
chr22	16603112	16603211	18285737	0	+	0.515152	(0.49,0.53]	chr22	1551649	5	INTRON	INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	3	20	2	2.13501	2.4623150000000003	2.78962	0.0287874	0.0129044	0.128869	0.0725185
chr9	131130765	131130836	10495660	0	+	0.521127	(0.49,0.53]	chr9	793200	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000651639.1:ENST00000451030.5:ENST00000526412.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.13501	2.4623150000000003	2.78962	0.0287874	0.0129044	0.128869	0.0725185
chr7	103141446	103141545	8960443	0	-	0.515152	(0.49,0.53]	chr7	685654	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	NAPEPLD:RP11-401L13.4	ENSG00000161048.12:ENSG00000224415.1	ENST00000341533.8:ENST00000465647.6:ENST00000417955.5:ENST00000422589.5:ENST00000427257.5:ENST00000418294.1:ENST00000479761.1:ENST00000425379.1:ENST00000432746.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	6	38	2	2.38683	2.4621649999999997	2.5375	0.012654	0.00104367	0.0718207	0.0115928
chr22	16614040	16614137	18285848	0	+	0.56701	(0.53,0.59]	chr22	1551656	16	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1:ENST00000588548.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	14	97	2	1.80172	2.462035	3.12235	0.00654985	5.39156e-6	0.0454205	1.64762e-4
chr16	30070016	30070114	15628437	0	+	0.632653	(0.59,1]	chr16	1239798	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	112	2	1.23637	2.462005	3.68764	0.0433716	4.42534e-5	0.162318	0.00102453
chr10	102161832	102161925	11226676	0	+	0.516129	(0.49,0.53]	chr10	854871	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	51	2	2.21413	2.461875	2.70962	0.00995539	1.8355e-4	0.0621728	0.00296537
chr1	220006105	220006174	1511058	0	-	0.42029	(0.42,0.455]	chr1	151047	1	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	54	2	1.78521	2.46186	3.13851	0.0195653	2.78182e-5	0.0951892	6.37204e-4
chr11	118768287	118768352	12625625	0	-	0.430769	(0.42,0.455]	chr11	979575	2	CDS	CDS:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000526070.2:ENST00000525082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.19674	2.4618	2.72686	0.0254904	0.00330337	0.117089	0.027613
chr17	82601595	82601692	16384588	0	+	0.453608	(0.42,0.455]	chr17	1332764	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000529652.1:ENST00000624186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:TEC:processed_transcript	4	25	2	2.19674	2.4618	2.72686	0.0254904	0.00330337	0.117089	0.027613
chr2	157259245	157259342	2152116	0	+	0.443299	(0.42,0.455]	chr2	198573	12	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.19674	2.4618	2.72686	0.0254904	0.00330337	0.117089	0.027613
chr18	56602927	56603026	17136169	0	-	0.424242	(0.42,0.455]	chr18	1406915	59	UTR3	UTR3:EXON_MRNA	TXNL1	ENSG00000091164.13	ENST00000217515.11:ENST00000590954.5:ENST00000587807.5:ENST00000589931.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	2.44942	2.461605	2.47379	0.00996858	0.0016479	0.0621728	0.0163521
chr1	39752966	39753052	151198	0	+	0.523256	(0.49,0.53]	chr1	18840	1	CDS	CDS:UTR3:EXON_MRNA	PPIE	ENSG00000084072.17	ENST00000324379.10:ENST00000356511.6:ENST00000495526.5:ENST00000482751.5:ENST00000372830.5:ENST00000372835.9:ENST00000470213.5:ENST00000497370.5:ENST00000475350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.13501	2.461475	2.78794	0.0287874	0.00251838	0.128869	0.0226599
chr11	71434500	71434591	12444390	0	-	0.604396	(0.59,1]	chr11	966968	2	UTR3	UTR3:EXON_MRNA:INTRON	DHCR7	ENSG00000172893.17	ENST00000534795.5:ENST00000355527.8:ENST00000407721.6:ENST00000682708.1:ENST00000683287.1:ENST00000684396.1:ENST00000683714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	60	2	2.11642	2.461395	2.80637	0.0144884	0.00274489	0.0790431	0.0238522
chr13	95792613	95792712	13848752	0	+	0.363636	(0.36,0.39]	chr13	1086433	17	UTR3	UTR3:EXON_MRNA	DNAJC3	ENSG00000102580.15	ENST00000602402.6	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.89872	2.4613449999999997	3.02397	0.056542	0.00674398	0.19417	0.0461258
chr16	2767571	2767669	15494951	0	+	0.612245	(0.59,1]	chr16	1227802	62	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	2.42381	2.461205	2.4986	0.00452614	0.00349906	0.0346018	0.0296494
chr10	73766349	73766445	11115819	0	+	0.53125	(0.53,0.59]	chr10	845889	1	CDS	CDS:UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	2.35511	2.46088	2.56665	0.0445399	0.00209536	0.172163	0.0196588
chr8	140516486	140516581	9641882	0	+	0.357895	(0.33,0.36]	chr8	730104	14	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	2.43733	2.4608	2.48427	0.00277951	0.00150101	0.0248466	0.0152367
chr16	70535363	70535420	15729777	0	+	0.526316	(0.49,0.53]	chr16	1252909	2	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	1.9676	2.460725	2.95385	0.00876974	2.87717e-4	0.056115	0.00423277
chr1	162588692	162588762	507839	0	+	0.442857	(0.42,0.455]	chr1	54805	1	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.32656	2.46059	2.59462	0.0062772	0.00298867	0.0445415	0.0255712
chr9	83660924	83661020	10710353	0	-	0.416667	(0.39,0.42]	chr9	810178	11	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	55	2	1.69061	2.46059	3.23057	0.00532341	3.34829e-4	0.0392268	0.00509483
chr15	44608443	44608524	15254612	0	-	0.444444	(0.42,0.455]	chr15	1202645	1	CDS	CDS:UTR3:EXON_MRNA	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000558988.5:ENST00000683255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	2.32629	2.460455	2.59462	0.0153564	0.0062772	0.0832114	0.0445415
chr5	55358572	55358635	5973500	0	+	0.428571	(0.42,0.455]	chr5	468337	1	CDS	CDS:UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	2.32629	2.460455	2.59462	0.0153564	0.0062772	0.0832114	0.0445415
chr20	41123892	41123991	17790175	0	+	0.222222	[0,0.29]	chr20	1503539	7	UTR3	UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	2.11932	2.46033	2.80134	0.0332641	0.0049344	0.137922	0.0379087
chr16	176716	176811	15480741	0	+	0.663158	(0.59,1]	chr16	1224202	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1:ENST00000487791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	92	1031	2	2.18387	2.4602700000000004	2.73667	8.42867e-5	2.91432e-6	0.0015859	1.08954e-4
chr2	189468474	189468569	2272025	0	+	0.442105	(0.42,0.455]	chr2	206257	1	CDS	CDS:UTR3:EXON_MRNA	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.3259	2.46026	2.59462	0.0484606	0.0062772	0.175495	0.0445415
chr8	116856708	116856771	10035266	0	-	0.428571	(0.42,0.455]	chr8	755451	2	CDS	CDS:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	2.23503	2.4602399999999998	2.68545	0.00155841	0.00135767	0.0156889	0.0146849
chr19	1611029	1611125	17419518	0	-	0.333333	(0.33,0.36]	chr19	1452654	19	UTR3	UTR3:EXON_MRNA:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000592395.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000587425.5:ENST00000585731.5:ENST00000590684.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	42	2	1.70162	2.460195	3.21877	0.0112523	9.45896e-5	0.0665375	0.00188469
chr18	59328416	59328515	17142317	0	-	0.323232	(0.29,0.33]	chr18	1407602	7	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	12	56	2	1.99395	2.460095	2.92624	0.0131526	1.12581e-5	0.0733631	3.04525e-4
chr7	2376949	2377012	8096320	0	+	0.571429	(0.53,0.59]	chr7	618914	1	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	23	2	2.27113	2.4597499999999997	2.64837	0.0199467	0.0178853	0.0984041	0.0918323
chr9	131258663	131258761	10870343	0	-	0.571429	(0.53,0.59]	chr9	824566	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM78A	ENSG00000126882.13	ENST00000372269.7:ENST00000247295.4:ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.27113	2.4597499999999997	2.64837	0.0199467	0.0178853	0.0984041	0.0918323
chr8	111027305	111027386	10012249	0	-	0.345679	(0.33,0.36]	chr8	754628	1	EXON_LNCRNA	EXON_LNCRNA	LINC01608	ENSG00000253877.6	ENST00000670392.1:ENST00000658597.1:ENST00000662310.1:ENST00000671489.1:ENST00000668858.1:ENST00000669698.1:ENST00000665803.1:ENST00000658028.1:ENST00000664704.1:ENST00000661954.1:ENST00000661561.1:ENST00000658081.1:ENST00000667145.1:ENST00000658119.1:ENST00000524283.5:ENST00000669893.1:ENST00000660015.1:ENST00000668956.1:ENST00000657323.1:ENST00000663408.1:ENST00000653924.1:ENST00000659834.1:ENST00000658508.1:ENST00000669744.1:ENST00000658733.1:ENST00000657532.1:ENST00000665011.1:ENST00000523557.2:ENST00000669997.1:ENST00000663666.1:ENST00000660667.1:ENST00000668936.1	lncRNA	lncRNA	lncRNA	lncRNA	4	19	2	2.28465	2.459605	2.63456	0.0188404	0.00707461	0.0958835	0.0478528
chr1	145992622	145992717	1270237	0	-	0.536842	(0.53,0.59]	chr1	125527	3	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	59	337	2	1.92009	2.459555	2.99902	1.70106e-4	2.65786e-7	0.00276752	1.44836e-5
chr11	27498057	27498156	12314485	0	-	0.323232	(0.29,0.33]	chr11	952674	38	UTR3	UTR3:EXON_MRNA	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.78695	2.459535	3.13212	0.0289406	0.00551048	0.127328	0.0414592
chr13	48481124	48481219	13726823	0	+	0.315789	(0.29,0.33]	chr13	1081506	12	UTR3	UTR3:EXON_MRNA:INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.78695	2.459535	3.13212	0.0289406	0.00551048	0.127328	0.0414592
chr21	45480466	45480520	18145596	0	+	0.62963	(0.59,1]	chr21	1539723	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	10	118	2	1.74674	2.459535	3.17233	0.0158071	4.78944e-5	0.085143	9.91058e-4
chr7	140454219	140454318	9107992	0	-	0.323232	(0.29,0.33]	chr7	695057	13	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5:ENST00000495305.5:ENST00000474576.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	19	2	1.78695	2.459535	3.13212	0.0289406	0.00551048	0.127328	0.0414592
chr2	61518712	61518810	2690782	0	-	0.387755	(0.36,0.39]	chr2	240417	39	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	61	2	2.0435	2.4594	2.8753	0.00201835	6.48632e-5	0.0198129	0.00126613
chr15	40061252	40061349	14879428	0	+	0.536082	(0.53,0.59]	chr15	1168123	6	INTRON	INTRON	SRP14-AS1	ENSG00000248508.8	ENST00000559012.2:ENST00000655221.1:ENST00000667323.1:ENST00000504245.6:ENST00000668306.1	lncRNA	lncRNA	lncRNA	lncRNA	3	23	2	2.2596	2.45927	2.65894	0.0193255	0.0185443	0.0948733	0.0943643
chr19	2321779	2321822	17422982	0	-	0.627907	(0.59,1]	chr19	1453476	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LSM7	ENSG00000130332.15	ENST00000587502.2:ENST00000585409.2:ENST00000252622.15:ENST00000585395.6:ENST00000589532.5:ENST00000591515.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	50	2	2.38614	2.458805	2.53147	0.0128707	0.00807544	0.0725185	0.0531324
chr1	21695065	21695143	889661	0	-	0.371795	(0.36,0.39]	chr1	92055	1	CDS	CDS:EXON_MRNA:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000374732.7:ENST00000529637.5:ENST00000464577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	2.28639	2.45877	2.63115	0.0245975	0.00768469	0.114841	0.050396
chr5	73502544	73502601	6032182	0	+	0.350877	(0.33,0.36]	chr5	473082	2	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	BTF3	ENSG00000145741.16	ENST00000676862.1:ENST00000335895.12:ENST00000678135.1:ENST00000514360.5:ENST00000380591.7:ENST00000679077.1:ENST00000677654.1:ENST00000508901.1:ENST00000507081.6:ENST00000676856.1:ENST00000514505.7:ENST00000509708.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	51	2	2.15555	2.4585999999999997	2.76165	0.00575018	6.90648e-5	0.0426551	0.00133641
chr6	36598848	36598915	7134560	0	+	0.447761	(0.42,0.455]	chr6	549592	1	CDS	CDS:UTR3:EXON_MRNA	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	69	2	2.18693	2.45856	2.73019	0.00200137	4.7796e-5	0.0189555	0.00109049
chr5	72208975	72209073	6027887	0	+	0.326531	(0.29,0.33]	chr5	472574	39	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.14085	2.4583500000000003	2.77585	0.0143131	0.0117968	0.0780602	0.0686664
chr8	63211891	63211991	9370732	0	+	0.33	(0.29,0.33]	chr8	715902	23	UTR3	UTR3:EXON_MRNA	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000517371.5:ENST00000615676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	18	2	2.14085	2.4583500000000003	2.77585	0.0143131	0.0117968	0.0780602	0.0686664
chr22	21447529	21447628	18302339	0	+	0.555556	(0.53,0.59]	chr22	1554129	9	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	1.7872	2.458315	3.12943	0.00904074	4.81557e-4	0.0573336	0.00677016
chr7	873708	873802	8093914	0	+	0.351064	(0.33,0.36]	chr7	618494	5	UTR3	UTR3:EXON_MRNA:INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000425407.6:ENST00000429178.5:ENST00000433212.5:ENST00000457861.1:ENST00000475971.5:ENST00000497943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	2.12835	2.4581	2.78785	0.00459785	0.00115378	0.0351308	0.0130851
chr12	54233571	54233671	13342862	0	-	0.45	(0.42,0.455]	chr12	1049602	22	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	15	76	2	2.15166	2.45793	2.7642	6.21172e-4	1.43049e-4	0.00772798	0.00262236
chr7	12688254	12688354	8136647	0	+	0.47	(0.455,0.49]	chr7	621813	1	CDS_START	CDS_START:CDS:EXON_MRNA	ARL4A	ENSG00000122644.13	ENST00000396662.5:ENST00000356797.7:ENST00000396664.2:ENST00000439721.1:ENST00000396663.2:ENST00000651779.1:ENST00000404894.1	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.15985	2.45786	2.75587	0.0128965	0.00293507	0.0722356	0.025146
chr6	43179190	43179286	7156116	0	+	0.552083	(0.53,0.59]	chr6	552710	1	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	8	50	2	2.0427	2.4576700000000002	2.87264	0.00395612	0.00168899	0.0316979	0.0175515
chrX	77905261	77905357	18744924	0	+	0.333333	(0.33,0.36]	chrX	1599641	1	UTR3	UTR3:EXON_MRNA	COX7B	ENSG00000131174.7	ENST00000373335.4:ENST00000650309.2:ENST00000647835.1	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.65713	2.457665	3.2582	0.0528205	0.00230915	0.195536	0.0211205
chr11	2945116	2945214	12233395	0	-	0.510204	(0.49,0.53]	chr11	944838	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	31	2	2.12684	2.4572849999999997	2.78773	0.0134683	0.00257389	0.0744999	0.0235767
chr4	151100974	151101068	5165560	0	+	0.382979	(0.36,0.39]	chr4	417311	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	71	2	2.27506	2.45728	2.6395	3.99779e-4	1.13187e-4	0.0054764	0.00216261
chr7	43639499	43639581	8793915	0	-	0.560976	(0.53,0.59]	chr7	670392	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000488813.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	44	2	2.05734	2.4569799999999997	2.85662	0.0167029	4.88685e-4	0.0883198	0.00686067
chr9	92265025	92265123	10737291	0	-	0.530612	(0.53,0.59]	chr9	812316	2	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	2.0693	2.4569400000000003	2.84458	0.0160468	5.21436e-4	0.0860154	0.00674101
chr1	182384108	182384206	1401217	0	-	0.479592	(0.455,0.49]	chr1	141690	62	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1:ENST00000463851.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	39	202	2	2.06891	2.456695	2.84448	1.53654e-4	6.30499e-7	0.00279114	2.69935e-5
chr11	34090233	34090289	11905386	0	+	0.464286	(0.455,0.49]	chr11	909555	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	46	2	2.35972	2.45665	2.55358	0.0058634	4.7042e-4	0.0427941	0.00621718
chr8	90625173	90625272	9938565	0	-	0.30303	(0.29,0.33]	chr8	750226	33	UTR3	UTR3:EXON_MRNA	TMEM64	ENSG00000180694.14	ENST00000418210.2:ENST00000458549.7:ENST00000422900.1	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.83055	2.4565799999999998	3.08261	0.0348758	0.0048227	0.144642	0.0365653
chr12	56106587	56106661	12898021	0	+	0.554054	(0.53,0.59]	chr12	1004130	1	CDS	CDS:UTR5:EXON_MRNA	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5:ENST00000551061.1	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	1.61377	2.45626	3.29875	0.0436338	0.00191422	0.170594	0.018324
chr9	97998555	97998616	10381165	0	+	0.377049	(0.36,0.39]	chr9	781865	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANP32B	ENSG00000136938.9	ENST00000339399.5:ENST00000473205.1:ENST00000486769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	137	2	1.82944	2.45622	3.083	0.00138213	2.63608e-7	0.0149186	1.27947e-5
chr6	151099528	151099609	7489280	0	+	0.518519	(0.49,0.53]	chr6	572335	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	MTHFD1L:RPL32P16	ENSG00000120254.16:ENSG00000219747.1	ENST00000611279.4:ENST00000367321.8:ENST00000618312.4:ENST00000405720.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	13	76	2	2.30059	2.455895	2.6112	0.001114	1.01963e-4	0.0127792	0.00183311
chr14	77341274	77341373	14716030	0	-	0.50505	(0.49,0.53]	chr14	1153129	64	UTR3	UTR3:EXON_MRNA	TMED8	ENSG00000100580.8	ENST00000216468.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.26641	2.455845	2.64528	0.0202736	0.0190546	0.0984041	0.093872
chr6	135217863	135217880	7415095	0	+	0.529412	(0.49,0.53]	chr6	568359	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	2.26641	2.455845	2.64528	0.0202736	0.0190546	0.0984041	0.093872
chr17	82084875	82084953	16710745	0	-	0.653846	(0.59,1]	chr17	1378184	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	11	132	2	1.84259	2.455835	3.06908	0.011062	3.96328e-5	0.0653511	8.539e-4
chr6	38677000	38677098	7689640	0	-	0.357143	(0.33,0.36]	chr6	589572	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	32	131	2	2.31534	2.455825	2.59631	7.61889e-5	6.0085e-6	0.00159873	1.80766e-4
chr16	56429827	56429927	15959650	0	-	0.37	(0.36,0.39]	chr16	1279971	8	UTR3	UTR3:EXON_MRNA	NUDT21	ENSG00000167005.14	ENST00000300291.10	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.1437	2.4555949999999998	2.76749	0.0340515	0.00287858	0.141465	0.0247002
chr5	179707131	179707170	6414221	0	+	0.410256	(0.39,0.42]	chr5	499147	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	74	2	2.27012	2.45559	2.64106	0.00945558	2.25817e-5	0.0594007	5.37405e-4
chr2	74461661	74461757	2742884	0	-	0.5625	(0.53,0.59]	chr2	244411	4	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	63	2	1.75005	2.455575	3.1611	0.0106076	8.49658e-5	0.0640804	0.00159594
chr7	153413792	153413888	9138923	0	-	0.46875	(0.455,0.49]	chr7	698694	24	EXON_LNCRNA	EXON_LNCRNA	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000669818.1:ENST00000661082.1:ENST00000653989.1:ENST00000665909.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000670691.1:ENST00000416982.1	lncRNA	lncRNA	lncRNA	lncRNA	13	70	2	2.21818	2.4551749999999997	2.69217	0.001715	6.07848e-5	0.0167953	0.00132102
chr3	196053558	196053658	4663178	0	-	0.31	(0.29,0.33]	chr3	385559	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000463047.1:ENST00000475593.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	21	2	2.17855	2.455165	2.73178	0.0183673	0.00360855	0.0928041	0.0296421
chr19	2072705	2072804	17421617	0	-	0.464646	(0.455,0.49]	chr19	1453173	18	UTR3	UTR3:EXON_MRNA	MOB3A	ENSG00000172081.14	ENST00000357066.8	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.27152	2.45512	2.63872	0.00786769	0.00510378	0.0514287	0.0390492
chr6	158765740	158765837	8043891	0	-	0.484536	(0.455,0.49]	chr6	614903	1	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.27152	2.45512	2.63872	0.00786769	0.00510378	0.0514287	0.0390492
chr7	92609086	92609186	8924930	0	-	0.49	(0.455,0.49]	chr7	681136	43	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.27152	2.45512	2.63872	0.00786769	0.00510378	0.0514287	0.0390492
chr9	37357953	37358051	10255237	0	+	0.346939	(0.33,0.36]	chr9	771668	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	27	2	2.44986	2.45507	2.46028	0.00563343	0.00381804	0.0422191	0.0309081
chr17	32369857	32369955	16200649	0	+	0.295918	(0.29,0.33]	chr17	1308199	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	59	2	2.14527	2.45484	2.76441	5.41063e-4	2.69341e-4	0.00689416	0.00434425
chr3	133588834	133588929	3750856	0	+	0.294737	(0.29,0.33]	chr3	321181	6	UTR3	UTR3:EXON_MRNA	CDV3	ENSG00000091527.16	ENST00000264993.8:ENST00000420115.6:ENST00000515421.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.45373	2.45482	2.45591	0.0156405	0.00406506	0.084273700000000007	0.032143
chr14	19033322	19033421	14165657	0	+	0.313131	(0.29,0.33]	chr14	1108482	11	INTRON	INTRON	CTD-2314B22.1	ENSG00000258314.3	ENST00000611785.1	lncRNA	lncRNA	lncRNA	lncRNA	187	651	2	2.02051	2.45448	2.88845	2.21435e-5	2.71523e-9	5.27986e-4	2.73715e-7
chr2	96295572	96295658	2790495	0	-	0.534884	(0.53,0.59]	chr2	248807	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	1.97928	2.45445	2.92962	0.0218546	0.0012954	0.104785	0.0136936
chr1	162527835	162527935	507541	0	+	0.32	(0.29,0.33]	chr1	54762	54	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.98817	2.45441	2.92065	0.0117842	0.00889512	0.0686664	0.0565003
chr11	9446464	9446562	11792901	0	+	0.387755	(0.36,0.39]	chr11	902941	14	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.02118	2.4544	2.88762	0.0251625	4.35345e-4	0.117055	0.005869
chr12	50478328	50478426	12872206	0	+	0.234694	[0,0.29]	chr12	1000197	26	UTR3	UTR3:EXON_MRNA	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000398473.7	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.08434	2.4543850000000003	2.82443	0.0181581	0.0180803	0.0945306	0.0920398
chr2	173909841	173909940	3019698	0	-	0.242424	[0,0.29]	chr2	267353	20	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000651846.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000465379.1:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	2.08434	2.4543850000000003	2.82443	0.0181581	0.0180803	0.0945306	0.0920398
chr5	54403105	54403202	5970595	0	+	0.42268	(0.42,0.455]	chr5	468056	16	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC01033	ENSG00000249069.8	ENST00000653566.1:ENST00000655801.1:ENST00000654906.1:ENST00000659703.1:ENST00000662351.1:ENST00000523194.7:ENST00000665795.1:ENST00000667992.1:ENST00000657771.1:ENST00000658828.1:ENST00000670528.1:ENST00000657274.1:ENST00000504609.3	lncRNA	lncRNA	lncRNA	lncRNA	9	47	2	1.87857	2.454335	3.0301	0.00949283	1.85605e-4	0.0596168	0.00297242
chr14	75133517	75133615	14709061	0	-	0.346939	(0.33,0.36]	chr14	1152525	22	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	10	43	2	2.01701	2.4543	2.89159	0.00697043	1.48308e-4	0.0474694	0.00248688
chr11	66276527	66276623	11989569	0	+	0.583333	(0.53,0.59]	chr11	921606	4	UTR3	UTR3:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	5	36	2	2.43852	2.45426	2.47	0.0089333	0.00373745	0.0567495	0.0303359
chr11	64204459	64204543	11979329	0	+	0.5	(0.49,0.53]	chr11	918745	5	UTR3	UTR3:EXON_MRNA	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.65324	2.45419	3.25514	0.0407792	0.00227467	0.163285	0.0209546
chr16	67542265	67542365	15710610	0	+	0.62	(0.59,1]	chr16	1250318	5	CDS	CDS:EXON_MRNA	RIPOR1	ENSG00000039523.20	ENST00000379312.7:ENST00000042381.9:ENST00000540839.7:ENST00000422602.8:ENST00000428437.6:ENST00000569253.5:ENST00000566559.5:ENST00000569733.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.38614	2.4538200000000003	2.5215	0.032241	0.0128707	0.135671	0.0725185
chr2	219250549	219250647	3191520	0	-	0.622449	(0.59,1]	chr2	280988	2	CDS	CDS:EXON_MRNA	TUBA4A	ENSG00000127824.15	ENST00000248437.9:ENST00000392088.6	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.38614	2.4538200000000003	2.5215	0.032241	0.0128707	0.135671	0.0725185
chr22	19036380	19036479	18430025	0	-	0.464646	(0.455,0.49]	chr22	1570339	2	UTR3	UTR3:EXON_MRNA	DGCR2	ENSG00000070413.20	ENST00000537045.5:ENST00000545799.5:ENST00000263196.12:ENST00000389262.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	37	2	1.53019	2.4537999999999998	3.37741	0.0428973	1.27402e-4	0.161091	0.00241206
chr6	32976320	32976392	7120836	0	+	0.513889	(0.49,0.53]	chr6	547266	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	66	2	1.58979	2.45354	3.31729	0.0211872	7.87963e-6	0.101914	2.25573e-4
chr6	34245268	34245365	7124347	0	+	0.618557	(0.59,1]	chr6	548262	5	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	60	663	2	2.30703	2.453535	2.60004	7.81145e-5	9.07355e-6	0.0016316	2.53877e-4
chr22	37877673	37877772	18364681	0	+	0.535354	(0.53,0.59]	chr22	1562205	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF3L:RP5-1014D13.2	ENSG00000100129.18:ENSG00000279738.1	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5:ENST00000623726.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	9	63	2	2.21316	2.4534849999999997	2.69381	0.00482336	2.03527e-4	0.0371856	0.00320125
chr16	75631773	75631855	16039115	0	-	0.5	(0.49,0.53]	chr16	1288310	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	36	2	1.75643	2.453435	3.15044	0.0293825	4.32676e-4	0.129773	0.00583708
chr9	130885203	130885298	10494283	0	+	0.684211	(0.59,1]	chr9	792934	14	CDS	CDS:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	4	50	2	2.24397	2.453355	2.66274	0.0206682	0.00482151	0.0997234	0.0365653
chr5	79619648	79619748	6052929	0	+	0.42	(0.39,0.42]	chr5	474932	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5:ENST00000503620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	54	2	2.03292	2.4530950000000002	2.87327	0.00788976	6.4732e-5	0.0522564	0.00126536
chr1	30933442	30933542	916290	0	-	0.53	(0.49,0.53]	chr1	95961	1	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	1.90685	2.45267	2.99849	0.0534351	0.00630123	0.184995	0.0445415
chr18	35340230	35340310	17076723	0	-	0.5125	(0.49,0.53]	chr18	1402856	1	CDS	CDS:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5:ENST00000590140.1	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.90685	2.45267	2.99849	0.0534351	0.00630123	0.184995	0.0445415
chr1	28058026	28058094	912134	0	-	0.352941	(0.33,0.36]	chr1	95407	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6:ENST00000373864.5:ENST00000373863.3:ENST00000471498.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	2.13965	2.452575	2.7655	0.0297101	0.0175892	0.129986	0.0918323
chr12	69260043	69260120	12941597	0	+	0.350649	(0.33,0.36]	chr12	1008756	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	2.13965	2.452575	2.7655	0.0297101	0.0175892	0.129986	0.0918323
chr21	14373134	14373231	18163685	0	-	0.340206	(0.33,0.36]	chr21	1542397	22	UTR3	UTR3:EXON_MRNA	HSPA13	ENSG00000155304.6	ENST00000285667.4	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.13965	2.452575	2.7655	0.0297101	0.0175892	0.129986	0.0918323
chr17	81843916	81844011	16709493	0	-	0.715789	(0.59,1]	chr17	1377674	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	129	2	2.29488	2.4525449999999998	2.61021	0.00407435	1.97329e-4	0.0324137	0.00313008
chr8	21999604	21999674	9222074	0	+	0.428571	(0.42,0.455]	chr8	705036	2	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8:ENST00000517551.2	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	2.03532	2.4524749999999997	2.86963	0.040947	4.62477e-4	0.163285	0.00613242
chr1	113116361	113116436	413587	0	+	0.493333	(0.49,0.53]	chr1	40837	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.18239	2.4524549999999996	2.72252	0.024394	0.0161474	0.111797	0.0860154
chr16	1700225	1700322	15488683	0	+	0.515464	(0.49,0.53]	chr16	1226190	1	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.18239	2.4524549999999996	2.72252	0.024394	0.0161474	0.111797	0.0860154
chr8	23027132	23027210	9755855	0	-	0.576923	(0.53,0.59]	chr8	737516	1	CDS	CDS:UTR3:EXON_MRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000523752.5:ENST00000347739.3:ENST00000523504.5:ENST00000520109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	32	2	1.90953	2.45232	2.99511	0.0517711	9.46531e-4	0.193577	0.010681
chr7	150949790	150949884	9128652	0	-	0.553191	(0.53,0.59]	chr7	697467	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	87	2	2.31403	2.45219	2.59035	0.00100221	1.20217e-4	0.011917	0.00209719
chr12	108645905	108646005	13530482	0	-	0.59	(0.53,0.59]	chr12	1063929	9	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.27113	2.452145	2.63316	0.0178853	0.00474401	0.0918323	0.0361423
chr8	30069641	30069725	9780520	0	-	0.511905	(0.49,0.53]	chr8	739519	1	CDS	CDS:UTR3:EXON_MRNA	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000522794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	43	2	1.95113	2.45202	2.95291	0.00618788	0.00119735	0.0440445	0.0134293
chr2	15630906	15630974	1651011	0	+	0.25	[0,0.29]	chr2	162989	1	UTR3	UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	29	2	2.33679	2.451995	2.5672	0.00335866	0.00216014	0.0280262	0.0208941
chr14	102050463	102050518	14495928	0	+	0.509091	(0.49,0.53]	chr14	1133288	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.30264	2.4519	2.60116	0.0165402	0.0056515	0.087611	0.0422191
chr14	102727890	102727989	14500046	0	+	0.424242	(0.42,0.455]	chr14	1133640	15	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.15137	2.451835	2.7523	0.0153283	0.0123864	0.0828908	0.07101
chr17	1655446	1655543	16401317	0	-	0.494845	(0.49,0.53]	chr17	1334846	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	8	50	2	2.02795	2.45179	2.87563	0.0110299	1.52968e-4	0.0652374	0.00254995
chr1	204410832	204410927	1457486	0	-	0.568421	(0.53,0.59]	chr1	146827	15	CDS	CDS:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	3	24	2	2.35511	2.4517749999999996	2.54844	0.0445399	0.00663226	0.172163	0.0461575
chr10	24584610	24584710	11416153	0	-	0.52	(0.49,0.53]	chr10	870102	2	CDS	CDS:UTR3:EXON_MRNA	ARHGAP21	ENSG00000107863.19	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1:ENST00000320481.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.38683	2.45177	2.51671	0.012654	0.00768763	0.0718207	0.050396
chr1	207785618	207785682	690132	0	+	0.40625	(0.39,0.42]	chr1	70105	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000636114.1:ENST00000488596.5:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	25	119	2	2.3398	2.45169	2.56358	9.4525e-5	2.13699e-5	0.00188394	5.11112e-4
chr12	121831882	121831979	13120781	0	+	0.43299	(0.42,0.455]	chr12	1024535	18	UTR3	UTR3:EXON_MRNA	SETD1B	ENSG00000139718.11	ENST00000604567.6:ENST00000542440.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.36247	2.4514500000000004	2.54043	0.0462889	0.00705852	0.176878	0.047732
chr4	78859583	78859635	4912165	0	+	0.423077	(0.42,0.455]	chr4	404356	1	CDS	CDS:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1:ENST00000515075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.36247	2.4514500000000004	2.54043	0.0462889	0.00705852	0.176878	0.047732
chr12	96902603	96902698	13487520	0	-	0.4	(0.39,0.42]	chr12	1060757	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P33	ENSG00000258846.1	ENST00000554413.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	61	2	2.18155	2.451355	2.72116	0.0283931	2.88247e-5	0.127654	6.56466e-4
chr16	29698500	29698599	15626501	0	+	0.50505	(0.49,0.53]	chr16	1239217	12	UTR3	UTR3:EXON_MRNA	QPRT	ENSG00000103485.19	ENST00000395384.9	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.30147	2.451315	2.60116	0.0056515	0.0033367	0.0422191	0.0278556
chr11	126267254	126267335	12645192	0	-	0.444444	(0.42,0.455]	chr11	981861	2	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000528744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	44	2	1.63927	2.451285	3.2633	0.0455517	4.36674e-5	0.175554	9.18809e-4
chr15	57990468	57990552	15305467	0	-	0.369048	(0.36,0.39]	chr15	1208116	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	ALDH1A2:RP11-86K22.2	ENSG00000128918.15:ENSG00000274719.1	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000621880.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	7	33	2	2.2842	2.45115	2.6181	0.0049656	0.00176908	0.0381176	0.0172426
chrX	71296850	71296948	18730856	0	+	0.540816	(0.53,0.59]	chrX	1598426	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000450092.6:ENST00000454976.2:ENST00000418921.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	50	2	2.23406	2.451095	2.66813	0.00870728	5.09538e-4	0.0558165	0.00662599
chr1	21832494	21832550	890714	0	-	0.678571	(0.59,1]	chr1	92258	1	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1	protein_coding	protein_coding	protein_coding	protein_coding	10	107	2	1.77756	2.450955	3.12435	0.0106373	1.94602e-4	0.0647285	0.00332928
chr5	87268166	87268261	6074837	0	+	0.568421	(0.53,0.59]	chr5	476427	4	UTR5	UTR5:EXON_MRNA	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	31	2	2.0404	2.45071	2.86102	0.0362529	0.0017805	0.148525	0.0172974
chr19	47756687	47756738	17363750	0	+	0.54902	(0.53,0.59]	chr19	1441434	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	NOP53	ENSG00000105373.19	ENST00000246802.10:ENST00000600410.5:ENST00000598681.5:ENST00000595143.5:ENST00000597985.5:ENST00000598959.5:ENST00000594182.1:ENST00000598285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	91	2	2.05519	2.4507000000000003	2.84621	0.00373312	2.12343e-5	0.0312524	5.08042e-4
chr18	32412694	32412790	17064961	0	-	0.4375	(0.42,0.455]	chr18	1402366	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	GAREM1:HNRNPA1P7	ENSG00000141441.16:ENSG00000215492.6	ENST00000269209.7:ENST00000399218.8:ENST00000521273.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	11	55	2	2.06706	2.450505	2.83395	0.00178874	6.25227e-4	0.0173692	0.00830005
chr11	87038045	87038145	12052021	0	+	0.62	(0.59,1]	chr11	929239	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	52	2	1.96394	2.45046	2.93698	0.0453144	0.0015925	0.174798	0.0159023
chr8	123182763	123182856	9588350	0	+	0.655914	(0.59,1]	chr8	727171	9	UTR5	UTR5:EXON_MRNA	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	4	52	2	1.96394	2.45046	2.93698	0.0453144	0.0015925	0.174798	0.0159023
chr1	25266516	25266610	903058	0	-	0.361702	(0.36,0.39]	chr1	93958	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1:RP3-465N24.5	ENSG00000117616.18:ENSG00000261349.1	ENST00000473314.6:ENST00000568701.1:ENST00000561867.1:ENST00000568996.1:ENST00000450820.2:ENST00000566714.1	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:unprocessed_pseudogene	3	16	2	2.05966	2.450275	2.84089	0.0366015	0.0128123	0.145024	0.0719798
chr17	56946441	56946511	16608929	0	-	0.385714	(0.36,0.39]	chr17	1364145	1	CDS	CDS:EXON_MRNA	COIL	ENSG00000121058.5	ENST00000240316.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.05966	2.450275	2.84089	0.0366015	0.0128123	0.145024	0.0719798
chr21	33296183	33296257	18099793	0	+	0.378378	(0.36,0.39]	chr21	1534374	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AP000295.9:IL10RB	ENSG00000249624.10:ENSG00000243646.10	ENST00000683116.1:ENST00000646150.1:ENST00000682009.1:ENST00000290200.7:ENST00000422891.5:ENST00000493295.5:ENST00000451065.1:ENST00000609556.2:ENST00000637650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.05966	2.450275	2.84089	0.0366015	0.0128123	0.145024	0.0719798
chr3	20153612	20153711	3343191	0	+	0.383838	(0.36,0.39]	chr3	293809	12	UTR3	UTR3:EXON_MRNA	KAT2B	ENSG00000114166.8	ENST00000263754.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.05966	2.450275	2.84089	0.0366015	0.0128123	0.145024	0.0719798
chr13	30463530	30463580	13949082	0	-	0.44	(0.42,0.455]	chr13	1094868	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	73	2	2.20639	2.45023	2.69407	0.00119032	6.17136e-5	0.012807	0.00133592
chr16	87403195	87403294	15801158	0	+	0.434343	(0.42,0.455]	chr16	1257525	2	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.84101	2.44995	3.05889	0.0352234	0.00524205	0.142054	0.0399155
chr17	76144838	76144937	16687617	0	-	0.454545	(0.42,0.455]	chr17	1374345	25	UTR3	UTR3:EXON_MRNA	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.84101	2.44995	3.05889	0.0352234	0.00524205	0.142054	0.0399155
chr1	29053103	29053172	120956	0	+	0.608696	(0.59,1]	chr1	14667	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	73	2	2.30623	2.449935	2.59364	0.0170607	0.0010223	0.0896731	0.0113689
chr17	63550677	63550777	16317150	0	+	0.56	(0.53,0.59]	chr17	1323630	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000582274.1:ENST00000615512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	45	2	2.0271	2.4498699999999998	2.87264	0.00643061	0.00168899	0.0450905	0.0175515
chr3	41240077	41240169	3432634	0	+	0.26087	[0,0.29]	chr3	298581	9	UTR3	UTR3:EXON_MRNA:INTRON	CTNNB1	ENSG00000168036.18	ENST00000396185.8:ENST00000643031.1:ENST00000396183.7:ENST00000349496.11:ENST00000471014.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	27	2	1.65198	2.449865	3.24775	0.0369328	2.91652e-4	0.151225	0.00428484
chr1	108637931	108638030	394963	0	+	0.414141	(0.39,0.42]	chr1	38052	29	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	2.01081	2.449585	2.88836	0.0207537	0.0102432	0.100574	0.062872
chr10	69157104	69157163	11094516	0	+	0.40678	(0.39,0.42]	chr10	843432	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VPS26A	ENSG00000122958.15	ENST00000373382.5:ENST00000395098.5:ENST00000489656.5:ENST00000263559.11:ENST00000497564.5:ENST00000490696.5:ENST00000467852.1:ENST00000489794.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	21	2	2.01081	2.449585	2.88836	0.0207537	0.0102432	0.100574	0.062872
chr17	35605704	35605772	16206292	0	+	0.411765	(0.39,0.42]	chr17	1309028	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000592167.5:ENST00000593014.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.01081	2.449585	2.88836	0.0207537	0.0102432	0.100574	0.062872
chr16	9107038	9107137	15534201	0	+	0.50505	(0.49,0.53]	chr16	1230410	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C16orf72:RP11-473I1.9	ENSG00000182831.12:ENSG00000263244.2	ENST00000327827.12:ENST00000574285.2:ENST00000574616.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	39	2	1.94617	2.44954	2.95291	0.00934781	0.00119735	0.0589275	0.0134293
chr10	73398248	73398316	11571640	0	-	0.647059	(0.59,1]	chr10	880911	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	28	2	2.28778	2.4492599999999998	2.61074	0.0556537	0.025486	0.191528	0.117089
chr2	112645938	112646033	2001731	0	+	0.663158	(0.59,1]	chr2	189998	1	UTR5	UTR5:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	2	28	2	2.28778	2.4492599999999998	2.61074	0.0556537	0.025486	0.191528	0.117089
chr3	38008546	38008636	4121236	0	-	0.622222	(0.59,1]	chr3	344561	2	CDS	CDS:EXON_MRNA	PLCD1	ENSG00000187091.14	ENST00000334661.5:ENST00000461445.5:ENST00000463876.5:ENST00000495395.1:ENST00000484829.5:ENST00000495367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	28	2	2.28778	2.4492599999999998	2.61074	0.0556537	0.025486	0.191528	0.117089
chr22	30337827	30337897	18469694	0	-	0.6	(0.59,1]	chr22	1575843	3	CDS	CDS:UTR3:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13:ENST00000411423.1:ENST00000444440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	60	2	1.97731	2.44914	2.92097	0.0102634	0.00878719	0.0628742	0.0562439
chr3	9470552	9470646	3298308	0	+	0.56383	(0.53,0.59]	chr3	289589	2	CDS	CDS:UTR3:EXON_MRNA	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	37	2	1.78041	2.4491	3.11779	0.0407112	5.11883e-4	0.163285	0.00664583
chrX	142202777	142202865	19261775	0	-	0.522727	(0.49,0.53]	chrX	1636099	6	UTR3	UTR3:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	2.42839	2.448985	2.46958	0.00344146	5.32316e-4	0.0292838	0.00683582
chr2	113958245	113958344	2007129	0	+	0.242424	[0,0.29]	chr2	190801	9	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	67	2	2.32125	2.448975	2.5767	3.28732e-4	1.3379e-4	0.00504024	0.00229039
chr2	159748703	159748803	2163038	0	+	0.45	(0.42,0.455]	chr2	199192	10	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	44	2	1.99701	2.4489099999999997	2.90081	0.0235036	1.31286e-4	0.111072	0.00226535
chr17	75832965	75833045	16685057	0	-	0.525	(0.49,0.53]	chr17	1373516	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UNC13D	ENSG00000092929.12	ENST00000207549.9:ENST00000412096.6:ENST00000586930.1:ENST00000591563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	2.38097	2.4488399999999997	2.51671	0.0425419	0.00768763	0.167547	0.050396
chr2	218274982	218275080	3186638	0	-	0.520408	(0.49,0.53]	chr2	279898	9	UTR3	UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	21	2	2.38097	2.4488399999999997	2.51671	0.0425419	0.00768763	0.167547	0.050396
chr4	56460032	56460130	4848730	0	+	0.428571	(0.42,0.455]	chr4	399473	6	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	18	93	2	2.42653	2.4488250000000003	2.47112	1.57028e-4	1.09909e-4	0.00283728	0.00195639
chr16	67100165	67100264	15708075	0	+	0.282828	[0,0.29]	chr16	1249605	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000290858.11:ENST00000412916.7:ENST00000652116.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	2.28104	2.4486600000000003	2.61628	0.0202028	0.0101434	0.0984041	0.0626311
chr3	4982929	4983024	3277639	0	+	0.631579	(0.59,1]	chr3	288720	2	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	64	2	2.19052	2.4486	2.70668	0.0237927	0.0014458	0.109413	0.0155288
chr12	98515967	98516056	13036529	0	+	0.707865	(0.59,1]	chr12	1014932	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	72	2	2.44587	2.4485650000000003	2.45126	0.0105307	0.00209267	0.0644466	0.0204266
chr1	70237488	70237552	280759	0	+	0.421875	(0.42,0.455]	chr1	30188	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRSF11	ENSG00000116754.13	ENST00000370951.5:ENST00000370950.7:ENST00000395136.6:ENST00000486667.5:ENST00000484162.5:ENST00000370949.1:ENST00000463859.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.32646	2.448485	2.57051	0.0265466	0.00624136	0.120071	0.0443844
chr5	127552707	127552806	6205036	0	+	0.353535	(0.33,0.36]	chr5	483456	9	UTR3	UTR3:EXON_MRNA:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	15	69	2	2.19355	2.44827	2.70299	0.00302788	2.11613e-5	0.026885	5.06712e-4
chr18	13056514	13056606	16764699	0	+	0.423913	(0.42,0.455]	chr18	1382887	9	CDS	CDS:UTR3:EXON_MRNA	CEP192	ENSG00000101639.18	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.3259	2.4482049999999997	2.57051	0.0484606	0.0265466	0.175495	0.120071
chr5	132927120	132927207	6838187	0	-	0.448276	(0.42,0.455]	chr5	523334	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5:ENST00000465484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.3259	2.4482049999999997	2.57051	0.0484606	0.0265466	0.175495	0.120071
chr7	44802718	44802817	8261681	0	+	0.424242	(0.42,0.455]	chr7	629477	14	UTR3	UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.3259	2.4482049999999997	2.57051	0.0484606	0.0265466	0.175495	0.120071
chr8	109243204	109243301	10008530	0	-	0.42268	(0.42,0.455]	chr8	754382	2	CDS	CDS:UTR3:EXON_MRNA	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000679027.1:ENST00000678094.1:ENST00000676990.1:ENST00000519607.5:ENST00000427660.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.3259	2.4482049999999997	2.57051	0.0484606	0.0265466	0.175495	0.120071
chr5	178207159	178207225	6411551	0	+	0.409091	(0.39,0.42]	chr5	498712	2	CDS	CDS:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.87119	2.44818	3.02517	0.0373134	8.3811e-4	0.152293	0.00981548
chr11	65443858	65443958	11984782	0	+	0.48	(0.455,0.49]	chr11	920390	199	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	NEAT1:MIR612	ENSG00000245532.9:ENSG00000283791.1	ENST00000501122.2:ENST00000384994.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	12	61	2	2.01498	2.448095	2.88121	0.00237108	1.57495e-4	0.0216648	0.002844
chr11	64197333	64197397	11979245	0	+	0.453125	(0.42,0.455]	chr11	918709	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000544739.5:ENST00000537479.5:ENST00000538497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	49	2	1.87159	2.44807	3.02455	0.0214479	5.96517e-5	0.102998	0.00119544
chr17	59838294	59838345	16296961	0	+	0.54902	(0.53,0.59]	chr17	1321860	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	74	2	1.48274	2.4480399999999998	3.41334	0.0371726	4.1948e-6	0.151929	1.3386e-4
chr4	165333547	165333625	5206865	0	+	0.230769	[0,0.29]	chr4	420257	2	CDS	CDS:EXON_MRNA:INTRON	MSMO1	ENSG00000052802.13	ENST00000507013.5:ENST00000261507.11:ENST00000393766.6:ENST00000504317.1:ENST00000505270.1	protein_coding	protein_coding	protein_coding	protein_coding	12	52	2	1.79922	2.4478999999999997	3.09658	0.0223458	6.26841e-6	0.106042	1.8727e-4
chr1	229324251	229324349	1541552	0	-	0.44898	(0.42,0.455]	chr1	154303	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	36	2	1.47189	2.447495	3.4231	0.0264934	0.00112541	0.117676	0.0128481
chr14	102034439	102034452	14495722	0	+	0.307692	(0.29,0.33]	chr14	1133202	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.22218	2.447475	2.67277	0.0255386	0.023782	0.117089	0.109413
chr3	101565617	101565709	3637896	0	+	0.315217	(0.29,0.33]	chr3	311905	9	CDS	CDS:EXON_MRNA	TRMT10C	ENSG00000174173.7	ENST00000309922.7:ENST00000495642.1	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.22218	2.447475	2.67277	0.0255386	0.023782	0.117089	0.109413
chr4	78809069	78809169	4911650	0	+	0.32	(0.29,0.33]	chr4	404312	320	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	2.22218	2.447475	2.67277	0.0255386	0.023782	0.117089	0.109413
chr5	179709790	179709872	6414254	0	+	0.304878	(0.29,0.33]	chr5	499164	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.22218	2.447475	2.67277	0.0255386	0.023782	0.117089	0.109413
chrX	30219631	30219723	18640668	0	+	0.293478	(0.29,0.33]	chrX	1590511	2	UTR3	UTR3:EXON_MRNA	MAGEB2	ENSG00000099399.6	ENST00000378988.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.22218	2.447475	2.67277	0.0255386	0.023782	0.117089	0.109413
chrX	154675248	154675345	19279024	0	-	0.319588	(0.29,0.33]	chrX	1638662	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GAB3	ENSG00000160219.12	ENST00000496390.5:ENST00000424127.3:ENST00000369575.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	2.22218	2.447475	2.67277	0.0255386	0.023782	0.117089	0.109413
chr6	52273741	52273828	7736687	0	-	0.574713	(0.53,0.59]	chr6	593721	1	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	9	58	2	1.8935	2.44718	3.00086	0.00775741	2.19267e-4	0.050813	0.00365543
chr12	54351657	54351751	12892171	0	+	0.478723	(0.455,0.49]	chr12	1003028	13	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000262061.7	protein_coding	protein_coding	protein_coding	protein_coding	13	67	2	2.23155	2.4471249999999998	2.6627	5.73968e-4	5.12443e-4	0.00781936	0.00665221
chr2	110653435	110653523	2838076	0	-	0.443182	(0.42,0.455]	chr2	253318	1	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	38	2	1.98051	2.44712	2.91373	0.00892357	0.00383646	0.0567495	0.0310411
chr18	9936161	9936213	16755945	0	+	0.403846	(0.39,0.42]	chr18	1381778	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000584796.5:ENST00000583879.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	99	2	1.90567	2.446945	2.98822	0.0065841	1.41105e-6	0.0454205	5.33533e-5
chrX	120439054	120439153	19196150	0	-	0.353535	(0.33,0.36]	chrX	1631971	27	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	2.12835	2.4469250000000002	2.7655	0.0175892	0.00459785	0.0918323	0.0351308
chr12	56107520	56107613	12898033	0	+	0.516129	(0.49,0.53]	chr12	1004141	1	CDS	CDS:EXON_MRNA	RP11-603J24.9:PA2G4	ENSG00000257411.2:ENSG00000170515.14	ENST00000548861.2:ENST00000552766.5:ENST00000303305.11:ENST00000553057.5:ENST00000550166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	58	2	2.4432	2.44688	2.45056	8.82833e-4	8.30002e-4	0.0107603	0.00973943
chr1	634527	634627	823376	0	-	0.49	(0.455,0.49]	chr1	81486	15	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	28	2	1.80405	2.44683	3.08961	0.017721400000000002	0.00445157	0.0918323	0.0340751
chr6	17615420	17615516	7618873	0	-	0.229167	[0,0.29]	chr6	580511	5	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	14	47	2	1.85644	2.44671	3.03698	0.00598039	2.51661e-5	0.0428861	6.50076e-4
chr10	17237271	17237351	10938858	0	+	0.3125	(0.29,0.33]	chr10	833015	1	UTR3	UTR3:EXON_MRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000224237.9:ENST00000487938.5:ENST00000469543.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	111	2	2.08887	2.4466650000000003	2.80446	6.67734e-4	1.61665e-6	0.008679	5.98677e-5
chr17	41755743	41755843	16542982	0	-	0.62	(0.59,1]	chr17	1356257	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	7	93	2	2.03921	2.44663	2.85405	0.0371471	1.36809e-4	0.151849	0.00232603
chr1	154273841	154273941	480186	0	+	0.54	(0.53,0.59]	chr1	49756	1	CDS_START	CDS_START:CDS:EXON_MRNA	HAX1	ENSG00000143575.15	ENST00000457918.6:ENST00000483970.6:ENST00000447768.6:ENST00000328703.12:ENST00000531435.5:ENST00000477780.2:ENST00000532105.1:ENST00000435087.1:ENST00000471326.5:ENST00000492550.1:ENST00000459914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	1.88327	2.446585	3.0099	0.0298124	0.00600486	0.129773	0.042887
chr1	109237730	109237788	398116	0	+	0.534483	(0.53,0.59]	chr1	38599	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000369923.4:ENST00000468588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	27	2	1.78041	2.44658	3.11275	0.0407112	0.00407571	0.163285	0.032143
chrX	120605482	120605559	18844391	0	+	0.376623	(0.36,0.39]	chrX	1605833	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCTS1	ENSG00000232119.8	ENST00000493879.5:ENST00000493274.5:ENST00000371317.10:ENST00000371315.3:ENST00000487133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	2.25794	2.446575	2.63521	0.00633242	0.00429221	0.0446708	0.0333617
chr19	38619174	38619268	17322721	0	+	0.617021	(0.59,1]	chr19	1434210	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3K	ENSG00000178982.10	ENST00000614624.4:ENST00000593149.5:ENST00000588934.5:ENST00000538434.5:ENST00000593062.5:ENST00000586932.5:ENST00000248342.9:ENST00000545173.6:ENST00000591409.5:ENST00000586513.4:ENST00000588422.3:ENST00000592558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	124	2	1.72077	2.4465500000000002	3.17233	0.0137395	4.78944e-5	0.0760883	9.91058e-4
chr1	148985490	148985588	460056	0	+	0.346939	(0.33,0.36]	chr1	45840	42	UTR3	UTR3:EXON_MRNA:INTRON	PDE4DIP	ENSG00000178104.19	ENST00000524974.5:ENST00000585156.5:ENST00000618462.4:ENST00000369356.8:ENST00000369354.7:ENST00000369349.7:ENST00000369351.7:ENST00000313431.13:ENST00000529945.2:ENST00000467859.3:ENST00000530062.5:ENST00000491426.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	19	2	1.97842	2.44613	2.91384	0.0469469	0.0021527	0.171977	0.0208395
chr18	21623788	21623888	16777666	0	+	0.41	(0.39,0.42]	chr18	1384072	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SNRPD1	ENSG00000167088.11	ENST00000300413.10:ENST00000579618.1:ENST00000582475.1	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	2.4030300000000002	2.4460100000000002	2.48899	0.00255585	6.84309e-4	0.0234576	0.00836671
chr10	43396455	43396549	11461859	0	-	0.617021	(0.59,1]	chr10	873969	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	85	2	2.24689	2.446005	2.64512	0.00890458	8.60995e-4	0.0565003	0.0105856
chr7	12343082	12343178	8683081	0	-	0.458333	(0.455,0.49]	chr7	663939	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	40	2	2.13613	2.4459999999999997	2.75587	0.00293507	0.00278559	0.025146	0.0248987
chr1	19419660	19419750	878589	0	-	0.566667	(0.53,0.59]	chr1	90710	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000489607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	27	2	1.87133	2.445935	3.02054	0.0308819	0.00577011	0.130016	0.0426551
chr11	106097503	106097602	12122396	0	+	0.464646	(0.455,0.49]	chr11	933147	7	UTR3	UTR3:EXON_MRNA	AASDHPPT	ENSG00000149313.11	ENST00000278618.9:ENST00000534152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	34	2	2.35644	2.4458349999999998	2.53523	0.00555877	0.00270505	0.0405952	0.0243939
chr12	54232074	54232174	13342847	0	-	0.47	(0.455,0.49]	chr12	1049602	7	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.35644	2.4458349999999998	2.53523	0.00555877	0.00270505	0.0405952	0.0243939
chr16	70253978	70254038	15996885	0	-	0.583333	(0.53,0.59]	chr16	1284602	2	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000675588.1:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000569825.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	2.37663	2.445815	2.515	0.0292633	0.00121282	0.129773	0.012983
chr21	33554101	33554200	18101198	0	+	0.353535	(0.33,0.36]	chr21	1534527	35	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	37	2	1.91991	2.44574	2.97157	0.0106036	2.7996e-4	0.0640636	0.00413887
chrX	103357999	103358091	18792627	0	+	0.26087	[0,0.29]	chrX	1602181	1	UTR3	UTR3:EXON_MRNA	TCEAL9	ENSG00000185222.10	ENST00000372656.5:ENST00000372661.6:ENST00000646896.1	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.7788	2.445685	3.11257	0.0208453	0.00120521	0.100997	0.0134827
chr2	43995794	43995847	2624069	0	-	0.773585	(0.59,1]	chr2	236303	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	2.42639	2.445615	2.46484	0.0409084	0.00383661	0.163285	0.0310411
chr1	16872521	16872619	74901	0	+	0.561224	(0.53,0.59]	chr1	8639	17	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CROCC:RP11-108M9.3	ENSG00000058453.17:ENSG00000228549.5	ENST00000466256.6:ENST00000438002.1:ENST00000662795.1:ENST00000668460.1:ENST00000451828.1:ENST00000660907.1:ENST00000453554.1:ENST00000666785.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	10	66	2	2.31403	2.445315	2.5766	0.00100221	8.34608e-4	0.011917	0.00978328
chr3	184183901	184183996	3948258	0	+	0.631579	(0.59,1]	chr3	332048	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000439647.5:ENST00000461733.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	51	2	2.03921	2.44522	2.85123	0.0371471	0.0022846	0.151849	0.0209856
chrX	12976894	12976977	18584861	0	+	0.46988	(0.455,0.49]	chrX	1587310	2	UTR3	UTR3:EXON_MRNA	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	11	57	2	1.91061	2.4449	2.97919	0.00539467	8.43808e-5	0.0396115	0.00173269
chr4	105485981	105486080	5026471	0	+	0.525253	(0.49,0.53]	chr4	409127	14	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	35	185	2	2.18533	2.44481	2.70429	6.27983e-5	7.09688e-6	0.00124286	2.28124e-4
chr16	56940157	56940245	15681290	0	+	0.465909	(0.455,0.49]	chr16	1246901	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	HERPUD1	ENSG00000051108.15	ENST00000439977.7:ENST00000300302.9:ENST00000344114.8:ENST00000570273.5:ENST00000379792.6:ENST00000563781.5:ENST00000568358.1:ENST00000564678.1:ENST00000563911.5:ENST00000568651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	29	2	2.04847	2.44463	2.84079	0.0192065	0.00201021	0.0943643	0.0190112
chr8	100721448	100721483	9976140	0	-	0.714286	(0.59,1]	chr8	752716	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	155	2	1.70797	2.44456	3.18115	0.00994477	2.0138e-5	0.0621728	4.89942e-4
chr14	94801023	94801111	14776640	0	-	0.363636	(0.36,0.39]	chr14	1157598	3	EXON_PSEUDO	EXON_PSEUDO	RPL15P2	ENSG00000240914.1	ENST00000490252.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	79	2	2.40789	2.4445550000000003	2.48122	1.69716e-4	1.33565e-4	0.00276222	0.00248469
chr3	196049479	196049578	4663135	0	-	0.424242	(0.42,0.455]	chr3	385550	3	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.99701	2.444465	2.89192	0.0235036	0.00157686	0.111072	0.015761
chr1	220022346	220022432	1511232	0	-	0.372093	(0.36,0.39]	chr1	151086	1	CDS	CDS:UTR3:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	44	2	2.42114	2.4444549999999996	2.46777	0.00564641	4.3886e-4	0.0422191	0.00591388
chr8	86560103	86560203	9457725	0	+	0.35	(0.33,0.36]	chr8	720297	18	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	20	2	2.36984	2.444355	2.51887	0.0358636	0.00564505	0.147298	0.041184
chr5	25189264	25189362	6504020	0	-	0.306122	(0.29,0.33]	chr5	504194	6	INTRON	INTRON	LINC02228	ENSG00000251273.4	ENST00000641970.1:ENST00000641261.2:ENST00000507600.2:ENST00000670589.1:ENST00000662466.1	lncRNA	lncRNA	lncRNA	lncRNA	6	24	2	2.14426	2.4441800000000002	2.7441	0.0142448	0.00173745	0.077929	0.0179204
chr1	236603155	236603255	1568764	0	-	0.42	(0.39,0.42]	chr1	157168	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6:ENST00000366579.1	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.66154	2.44408	3.22662	0.0452475	0.00257296	0.174743	0.0229363
chr8	140531843	140531943	10132161	0	-	0.4	(0.39,0.42]	chr8	760954	118	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	26	2	1.56001	2.44406	3.32811	0.0393342	0.00182819	0.151063	0.0183913
chr19	804035	804121	17189498	0	+	0.546512	(0.53,0.59]	chr19	1411021	1	CDS	CDS:EXON_MRNA:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	53	2	2.0949	2.4440049999999998	2.79311	0.00477326	6.84253e-4	0.0368489	0.00836671
chr19	53875079	53875175	17388675	0	+	0.645833	(0.59,1]	chr19	1446783	7	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	5	60	2	1.99004	2.4439349999999997	2.89783	0.0214639	0.00198798	0.102904	0.0195488
chr2	74214535	74214632	1891744	0	+	0.381443	(0.36,0.39]	chr2	179209	4	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	39	2	2.42114	2.443815	2.46649	0.00564641	7.95961e-4	0.0422191	0.00935982
chrX	151408874	151408972	18909829	0	+	0.346939	(0.33,0.36]	chrX	1610139	40	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	13	52	2	2.0302	2.44379	2.85738	0.00232929	1.17185e-4	0.0213008	0.00222902
chr11	32934037	32934137	11899067	0	+	0.34	(0.33,0.36]	chr11	909001	24	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	28	2	2.41541	2.4435200000000004	2.47163	0.0129725	0.00212038	0.0724783	0.0198025
chr15	71165045	71165138	15364110	0	-	0.526882	(0.49,0.53]	chr15	1213705	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	THSD4-AS1:HMGB1P6	ENSG00000259964.7:ENSG00000259781.1	ENST00000561571.5:ENST00000569046.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	6	35	2	1.94299	2.44351	2.94403	0.0152714	0.00122634	0.0828908	0.0130695
chr15	90882473	90882572	15103387	0	+	0.676768	(0.59,1]	chr15	1188584	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	2.03921	2.443345	2.84748	0.0371471	0.0124539	0.151849	0.0712518
chr3	53255942	53256022	4189316	0	-	0.7625	(0.59,1]	chr3	353849	1	UTR5	UTR5:EXON_MRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000483706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	65	2	1.83241	2.443305	3.0542	0.0111021	0.00663549	0.0665375	0.0456243
chrX	155279239	155279330	19283310	0	-	0.395604	(0.39,0.42]	chrX	1639094	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CLIC2	ENSG00000155962.13	ENST00000369449.7:ENST00000465553.5:ENST00000321926.4:ENST00000491205.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	49	2	2.13033	2.44326	2.75619	0.00865856	1.38708e-4	0.0557159	0.00235122
chr10	74072790	74072852	11117173	0	+	0.483871	(0.455,0.49]	chr10	846208	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	2.04847	2.4431950000000002	2.83792	0.0192065	0.0110512	0.0943643	0.0665375
chr19	808545	808617	17189557	0	+	0.625	(0.59,1]	chr19	1411045	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	101	2	1.60816	2.44313	3.2781	0.0256592	7.63487e-5	0.117611	0.00145373
chr1	29119165	29119263	121641	0	+	0.520408	(0.49,0.53]	chr1	14751	25	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	28	2	2.01913	2.443115	2.8671	0.0111252	0.0100489	0.0665375	0.0623334
chr3	141876801	141876901	3789686	0	+	0.58	(0.53,0.59]	chr3	323444	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	ATP1B3	ENSG00000069849.11	ENST00000475483.5:ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	49	2	1.94497	2.44311	2.94125	0.00618933	0.0012261800000000001	0.0440521	0.0135648
chr1	51781249	51781335	191618	0	+	0.395349	(0.39,0.42]	chr1	24544	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	26	2	2.18025	2.44308	2.70591	0.0185716	0.00587938	0.0932453	0.0424857
chr16	20775838	20775908	15582785	0	+	0.457143	(0.455,0.49]	chr16	1234744	1	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000289416.10:ENST00000440284.6:ENST00000561795.5:ENST00000562251.5	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	2.15985	2.442965	2.72608	0.0128965	1.66807e-4	0.0722356	0.00271868
chr22	35408407	35408485	18359460	0	+	0.551282	(0.53,0.59]	chr22	1560998	1	CDS	CDS:EXON_MRNA:INTRON	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000417343.1:ENST00000444778.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	42	2	2.38191	2.442955	2.504	0.00477439	0.00279409	0.0368489	0.0241702
chr6	26156582	26156674	7101285	0	+	0.619565	(0.59,1]	chr6	542804	2	CDS	CDS:EXON_MRNA	H1-4	ENSG00000168298.7	ENST00000304218.6	protein_coding	protein_coding	protein_coding	protein_coding	27	297	2	2.27592	2.44294	2.60996	2.6643e-4	4.93061e-5	0.00430195	0.00101415
chr6	160061574	160061646	7528495	0	+	0.486111	(0.455,0.49]	chr6	574832	2	CDS	CDS:UTR3:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	1.79605	2.44283	3.08961	0.0427708	0.00445157	0.168094	0.0340751
chr1	10408070	10408140	39788	0	+	0.542857	(0.53,0.59]	chr1	4798	1	CDS	CDS:EXON_MRNA:INTRON	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000483936.5:ENST00000465632.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding	10	68	2	1.79717	2.442745	3.08832	0.0116438	4.03289e-5	0.0686664	8.67021e-4
chrX	154359989	154360088	19278092	0	-	0.656566	(0.59,1]	chrX	1638314	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	60	2	2.3821	2.44266	2.50322	0.00863444	0.00554753	0.0556009	0.0417049
chr22	21449988	21450086	18302364	0	+	0.612245	(0.59,1]	chr22	1554129	34	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.19052	2.4426449999999997	2.69477	0.0237927	0.020208	0.109413	0.0978331
chr7	44834402	44834500	8800366	0	-	0.397959	(0.39,0.42]	chr7	671367	26	UTR3	UTR3:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5	protein_coding	protein_coding	protein_coding	protein_coding	8	41	2	2.31773	2.4426050000000004	2.56748	0.00382583	9.10614e-4	0.0319415	0.0103521
chrX	48466238	48466322	19062823	0	-	0.619048	(0.59,1]	chrX	1620422	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC38A5	ENSG00000017483.15	ENST00000595796.5:ENST00000619100.4:ENST00000622196.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5:ENST00000429543.2:ENST00000488083.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	37	2	1.96416	2.442565	2.92097	0.044741	0.0102634	0.166115	0.0628742
chr2	241229405	241229502	3250547	0	-	0.71134	(0.59,1]	chr2	286983	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5:ENST00000484412.1:ENST00000442730.1:ENST00000494862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	61	2	1.79051	2.44253	3.09455	0.0396851	7.92671e-4	0.161349	0.00933379
chr12	31980955	31981055	12816015	0	+	0.37	(0.36,0.39]	chr12	995185	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000540924.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	2.05966	2.44221	2.82476	0.0366015	8.21459e-4	0.145024	0.0102028
chr8	53967812	53967909	9832427	0	-	0.226804	[0,0.29]	chr8	743907	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	32	2	2.3458	2.4420900000000003	2.53838	0.0116272	5.9913e-4	0.0685835	0.0075062
chr16	75631415	75631502	16039109	0	-	0.505747	(0.49,0.53]	chr16	1288306	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	43	2	2.38683	2.4419649999999997	2.4971	0.012654	6.41492e-4	0.0718207	0.00796686
chr1	156134473	156134528	486112	0	+	0.509091	(0.49,0.53]	chr1	51270	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000470199.2:ENST00000368299.7:ENST00000502357.5:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	62	2	1.26856	2.44196	3.61536	0.0541847	3.77921e-6	0.199653	1.22746e-4
chr1	160997485	160997584	1331413	0	-	0.565657	(0.53,0.59]	chr1	136426	24	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.35511	2.441835	2.52856	0.0445399	0.00107225	0.172163	0.0118238
chr4	53428091	53428191	4832130	0	+	0.57	(0.53,0.59]	chr4	398382	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FIP1L1:RP11-231C18.3	ENSG00000145216.16:ENSG00000282278.1	ENST00000337488.11:ENST00000358575.9:ENST00000507922.5:ENST00000306932.10:ENST00000505125.5:ENST00000507166.5:ENST00000513975.5:ENST00000514543.5:ENST00000513008.5:ENST00000504094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	70	2	1.75164	2.4418100000000003	3.13198	0.00657847	1.01201e-4	0.0459288	0.00198127
chr20	34616041	34616139	17947577	0	-	0.5	(0.49,0.53]	chr20	1520061	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1:ENST00000628281.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	31	2	2.41364	2.44161	2.46958	0.0112538	0.00344146	0.0665375	0.0292838
chr7	76329768	76329861	8863413	0	-	0.537634	(0.53,0.59]	chr7	677478	2	CDS	CDS:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	10	72	2	1.55135	2.44153	3.33171	0.0294511	7.58734e-6	0.129773	2.19184e-4
chr6	28159064	28159163	7105842	0	+	0.424242	(0.42,0.455]	chr6	543601	52	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	9	49	2	2.11744	2.44145	2.76546	0.00497755	2.96831e-4	0.0381953	0.0043341
chr22	41636515	41636600	18381433	0	+	0.482353	(0.455,0.49]	chr22	1564687	1	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	2.19092	2.441305	2.69169	0.00318608	0.00126948	0.0267172	0.0139061
chr12	4099321	4099420	12704124	0	+	0.464646	(0.455,0.49]	chr12	985492	20	EXON_PSEUDO	EXON_PSEUDO	HSPA8P5	ENSG00000256356.1	ENST00000456928.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	24	2	2.35515	2.4412450000000003	2.52734	0.0140117	0.00792433	0.0767536	0.0523592
chr2	159748503	159748603	2163036	0	+	0.36	(0.33,0.36]	chr2	199192	8	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	26	2	2.10153	2.4412399999999996	2.78095	0.00871844	0.00388614	0.0560911	0.0322851
chr12	76355388	76355488	13424331	0	-	0.27	[0,0.29]	chr12	1056701	37	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	2.03267	2.44123	2.84979	0.0131453	6.05262e-4	0.0733537	0.00756349
chr20	47294722	47294779	17993973	0	-	0.438596	(0.42,0.455]	chr20	1525035	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.34191	2.44117	2.54043	0.0159091	0.00705852	0.0854674	0.047732
chr1	40422760	40422854	154043	0	+	0.585106	(0.53,0.59]	chr1	19281	8	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.23705	2.4409	2.64475	0.00453071	0.00245055	0.0351187	0.0221427
chr12	52949273	52949352	12884235	0	+	0.696203	(0.59,1]	chr12	1001690	1	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	79	2	1.42148	2.44077	3.46006	0.0566164	1.47498e-4	0.194397	0.00269445
chr1	110022072	110022170	401926	0	+	0.469388	(0.455,0.49]	chr1	39336	5	UTR3	UTR3:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.19092	2.440725	2.69053	0.0182983	0.00318608	0.0925808	0.0267172
chr22	21670565	21670615	18303486	0	+	0.4	(0.39,0.42]	chr22	1554292	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	39	2	2.19876	2.440715	2.68267	0.00372927	0.00125229	0.031224	0.0133064
chrX	103675685	103675780	19155322	0	-	0.389474	(0.36,0.39]	chrX	1629338	3	UTR3	UTR3:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	13	57	2	2.16673	2.4405799999999997	2.71443	7.72869e-4	5.60322e-4	0.00921437	0.00771955
chr1	11107104	11107199	859510	0	-	0.4	(0.39,0.42]	chr1	86914	7	UTR3	UTR3:EXON_MRNA	MTOR	ENSG00000198793.13	ENST00000361445.9:ENST00000376838.5	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.01677	2.440225	2.86368	0.0235818	0.0101619	0.111323	0.0627153
chr7	6462174	6462273	8664671	0	-	0.343434	(0.33,0.36]	chr7	662823	12	UTR3	UTR3:EXON_MRNA:INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000454368.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	48	2	2.00765	2.440225	2.8728	0.0287001	3.16831e-5	0.128757	7.04278e-4
chr2	32503138	32503236	1713904	0	+	0.438776	(0.42,0.455]	chr2	168239	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1:ENST00000497023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	29	2	2.40664	2.4402150000000002	2.47379	0.00996858	0.00445101	0.0621728	0.0340751
chr1	71063686	71063785	1086838	0	-	0.212121	[0,0.29]	chr1	110807	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	1.80685	2.440175	3.0735	0.0438772	0.00785095	0.163572	0.0520241
chr1	222621225	222621292	723875	0	+	0.41791	(0.39,0.42]	chr1	72950	2	CDS	CDS:EXON_MRNA	MIA3	ENSG00000154305.18	ENST00000344922.10:ENST00000470521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.38313	2.44007	2.49701	0.0339607	0.0128066	0.141431	0.0725185
chr14	77720769	77720828	14718825	0	-	0.40678	(0.39,0.42]	chr14	1153487	2	CDS	CDS:UTR3:EXON_MRNA	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.38313	2.44007	2.49701	0.0339607	0.0128066	0.141431	0.0725185
chr17	30287805	30287873	16496168	0	-	0.411765	(0.39,0.42]	chr17	1349364	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	BLMH	ENSG00000108578.15	ENST00000261714.11:ENST00000578090.5:ENST00000577623.5:ENST00000581037.5:ENST00000584603.2:ENST00000580709.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.38313	2.44007	2.49701	0.0339607	0.0128066	0.141431	0.0725185
chr1	159920409	159920509	1326694	0	-	0.53	(0.49,0.53]	chr1	135592	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9:ENST00000478033.1:ENST00000320307.8:ENST00000397334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	68	2	2.00284	2.4400500000000003	2.87726	0.00342076	6.30634e-5	0.0283456	0.00135503
chr21	37472683	37472760	18116989	0	+	0.506494	(0.49,0.53]	chr21	1536248	1	CDS	CDS:UTR5:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.38204	2.440005	2.49797	0.00843736	0.0049129	0.0546021	0.0366648
chr17	38852603	38852652	16532291	0	-	0.469388	(0.455,0.49]	chr17	1353503	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPL23	ENSG00000125691.14	ENST00000479035.7:ENST00000394333.5:ENST00000394332.5:ENST00000584912.5:ENST00000245857.9:ENST00000577407.5:ENST00000470646.1:ENST00000378096.3:ENST00000577760.1:ENST00000584056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	95	2	1.93086	2.43971	2.94856	0.00521832	3.12218e-6	0.0398977	1.04507e-4
chr22	35424155	35424255	18359639	0	+	0.62	(0.59,1]	chr22	1561064	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	59	2	2.24689	2.439515	2.63214	0.00890458	0.005622	0.0565003	0.0421873
chr2	74106076	74106176	1891227	0	+	0.48	(0.455,0.49]	chr2	179120	40	UTR3	UTR3:EXON_MRNA	TET3	ENSG00000187605.16	ENST00000409262.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.75044	2.439435	3.12843	0.0463133	0.00392855	0.170072	0.0322851
chr12	48694063	48694156	13321388	0	-	0.387097	(0.36,0.39]	chr12	1044936	11	CDS	CDS:UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8:ENST00000417344.2:ENST00000551989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	1.85489	2.4394299999999998	3.02397	0.0350721	0.00674398	0.141601	0.0461258
chr4	143350023	143350117	5694582	0	-	0.734043	(0.59,1]	chr4	451354	9	EXON_PSEUDO	EXON_PSEUDO	RP11-364L4.1	ENSG00000228981.3	ENST00000475555.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	137	2	2.19708	2.43941	2.68174	0.00253044	2.04667e-4	0.0233955	0.0032118
chr1	160289374	160289472	1328660	0	-	0.387755	(0.36,0.39]	chr1	135960	9	UTR3	UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	68	2	2.38112	2.4394	2.49768	0.0031815	6.44009e-5	0.0279343	0.00126255
chr11	118751691	118751789	12625444	0	-	0.387755	(0.36,0.39]	chr11	979521	41	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	60	2	2.0435	2.439345	2.83519	0.00201835	8.47223e-5	0.0198129	0.00159231
chr2	197409848	197409927	3106496	0	-	0.556962	(0.53,0.59]	chr2	274581	2	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	41	2	2.3186	2.43931	2.56002	0.00634904	0.00299541	0.0446708	0.0256157
chr6	52282044	52282109	7736778	0	-	0.538462	(0.53,0.59]	chr6	593751	1	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8	protein_coding	protein_coding	protein_coding	protein_coding	6	41	2	2.3186	2.43931	2.56002	0.00634904	0.00299541	0.0446708	0.0256157
chr18	163369	163454	16715708	0	+	0.494118	(0.49,0.53]	chr18	1379081	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000580410.5:ENST00000578942.5:ENST00000383589.6:ENST00000581983.1:ENST00000583119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.21413	2.43926	2.66439	0.00995539	0.00134122	0.0621728	0.0139818
chr18	46089821	46089908	17103862	0	-	0.517241	(0.49,0.53]	chr18	1404373	1	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000589611.1:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.21413	2.43926	2.66439	0.00995539	0.00134122	0.0621728	0.0139818
chr1	19086678	19086749	875705	0	-	0.56338	(0.53,0.59]	chr1	89903	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.37399	2.4392300000000002	2.50447	0.0301162	0.0126178	0.130016	0.0717599
chr11	61795461	61795555	11971301	0	+	0.531915	(0.53,0.59]	chr11	917378	1	CDS	CDS:EXON_MRNA:INTRON	FEN1:FADS2	ENSG00000168496.4:ENSG00000134824.14	ENST00000305885.3:ENST00000535723.1:ENST00000574708.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.37399	2.4392300000000002	2.50447	0.0301162	0.0126178	0.130016	0.0717599
chr9	135503639	135503737	10510109	0	+	0.55102	(0.53,0.59]	chr9	795602	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS2	ENSG00000122140.11	ENST00000371785.5:ENST00000241600.10:ENST00000488610.5:ENST00000485333.5:ENST00000472852.1:ENST00000453385.1:ENST00000472946.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	31	2	1.86855	2.439225	3.0099	0.0189167	0.00600486	0.0934721	0.042887
chr1	88832543	88832643	344329	0	+	0.32	(0.29,0.33]	chr1	33835	4	SS3_PROX	SS3_PROX:INTRON	PKN2	ENSG00000065243.20	ENST00000370521.8:ENST00000370513.9	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.74619	2.439155	3.13212	0.0509174	0.00551048	0.181793	0.0414592
chr14	55177244	55177336	14637683	0	-	0.326087	(0.29,0.33]	chr14	1146742	3	CDS	CDS:EXON_MRNA	DLGAP5	ENSG00000126787.13	ENST00000395425.6:ENST00000247191.7	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.74619	2.439155	3.13212	0.0509174	0.00551048	0.181793	0.0414592
chr22	21693815	21693872	18303743	0	+	0.508772	(0.49,0.53]	chr22	1554373	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	50	2	2.15115	2.4391350000000003	2.72712	0.00244265	9.78408e-4	0.0229387	0.0109424
chr8	47820718	47820793	9815962	0	-	0.386667	(0.36,0.39]	chr8	742567	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.42114	2.43885	2.45656	0.0100637	0.00564641	0.0624019	0.0422191
chr18	23541369	23541433	17037364	0	-	0.546875	(0.53,0.59]	chr18	1400567	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5:ENST00000586718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	23	2	2.36244	2.43872	2.515	0.0292633	0.0131162	0.129773	0.073569
chr7	73207000	73207094	8331592	0	+	0.553191	(0.53,0.59]	chr7	634360	10	EXON_LNCRNA	EXON_LNCRNA	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	23	2	2.36244	2.43872	2.515	0.0292633	0.0131162	0.129773	0.073569
chr6	31815756	31815856	7116660	0	+	0.64	(0.59,1]	chr6	546203	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	11	115	2	2.02434	2.438535	2.85273	0.00310399	6.88883e-4	0.0274272	0.00841789
chr1	151267243	151267343	471400	0	+	0.54	(0.53,0.59]	chr1	48117	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000445776.1:ENST00000427779.5:ENST00000453615.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	31	2	1.85636	2.43845	3.02054	0.0197135	0.00577011	0.0983378	0.0426551
chrX	1387348	1387419	18925577	0	-	0.647887	(0.59,1]	chrX	1612953	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	59	2	2.16424	2.43823	2.71222	0.0123032	0.00398753	0.0705839	0.031888
chr6	31782086	31782177	7662433	0	-	0.637363	(0.59,1]	chr6	585285	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1:ENST00000482996.5:ENST00000461874.1:ENST00000474643.5:ENST00000483275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	75	2	1.78172	2.438135	3.09455	0.0185954	7.92671e-4	0.0933517	0.00933379
chr13	25096697	25096796	13647290	0	+	0.383838	(0.36,0.39]	chr13	1075795	5	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	14	65	2	1.95472	2.438085	2.92145	0.00427139	2.18158e-5	0.0334337	5.20454e-4
chr11	34100251	34100349	11905497	0	+	0.336735	(0.33,0.36]	chr11	909587	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	68	2	1.74292	2.438015	3.13311	0.00822569	4.42881e-6	0.0540283	1.40161e-4
chr22	19423419	19423519	18433314	0	-	0.45	(0.42,0.455]	chr22	1570845	123	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	56	2	2.0286	2.438015	2.84743	0.00302631	2.0116e-4	0.0257942	0.0034174
chr6	170549005	170549059	8091142	0	-	0.388889	(0.36,0.39]	chr6	618046	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	60	2	1.71276	2.438015	3.16327	0.00708056	2.37351e-5	0.0478776	5.60496e-4
chr4	78850989	78851056	4912077	0	+	0.402985	(0.39,0.42]	chr4	404350	2	CDS	CDS:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000505725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.18155	2.437645	2.69374	0.0283931	0.00386013	0.127654	0.0310764
chr19	57862429	57862528	17410256	0	+	0.414141	(0.39,0.42]	chr19	1450687	24	UTR3	UTR3:EXON_MRNA	ZNF587	ENSG00000198466.12	ENST00000339656.8:ENST00000419854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	1.98676	2.43756	2.88836	0.0439902	0.0102432	0.163596	0.062872
chr1	241860610	241860704	796398	0	+	0.414894	(0.39,0.42]	chr1	79440	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EXO1	ENSG00000174371.17	ENST00000366548.8:ENST00000348581.9:ENST00000518483.5:ENST00000469419.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.37759	2.4373	2.49701	0.0428865	0.0339607	0.161091	0.141431
chr14	67650935	67651034	14683065	0	-	0.393939	(0.39,0.42]	chr14	1149578	40	UTR3	UTR3:EXON_MRNA	VTI1B	ENSG00000100568.11	ENST00000554659.6	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.37759	2.4373	2.49701	0.0428865	0.0339607	0.161091	0.141431
chr18	9257062	9257160	16752378	0	+	0.408163	(0.39,0.42]	chr18	1381467	30	CDS	CDS:EXON_MRNA	ANKRD12	ENSG00000101745.17	ENST00000262126.9:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.37759	2.4373	2.49701	0.0428865	0.0339607	0.161091	0.141431
chr3	160515451	160515515	4553248	0	-	0.40625	(0.39,0.42]	chr3	376988	1	CDS	CDS:UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678020.1:ENST00000678765.1:ENST00000483437.2:ENST00000678734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.37759	2.4373	2.49701	0.0428865	0.0339607	0.161091	0.141431
chr8	130054243	130054340	10090234	0	-	0.412371	(0.39,0.42]	chr8	758595	23	UTR3	UTR3:EXON_MRNA	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000524124.5:ENST00000357668.2:ENST00000521075.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.37759	2.4373	2.49701	0.0428865	0.0339607	0.161091	0.141431
chr9	86265742	86265842	10717944	0	-	0.4	(0.39,0.42]	chr9	810993	13	UTR3	UTR3:EXON_MRNA	ISCA1	ENSG00000135070.15	ENST00000375991.9:ENST00000311534.6	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.37759	2.4373	2.49701	0.0428865	0.0339607	0.161091	0.141431
chrX	71290637	71290737	18730784	0	+	0.44	(0.42,0.455]	chrX	1598402	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6:ENST00000450092.6:ENST00000454976.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	103	2	1.8563	2.4371	3.0179	0.00265658	1.67987e-6	0.0232657	6.82378e-5
chr1	30990298	30990397	916883	0	-	0.40404	(0.39,0.42]	chr1	96056	83	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	31	2	2.25245	2.43688	2.62131	0.00609677	0.00427758	0.0439136	0.0332717
chr17	1853100	1853189	16084078	0	+	0.404494	(0.39,0.42]	chr17	1293288	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPA1	ENSG00000132383.12	ENST00000571058.5:ENST00000570451.5:ENST00000254719.10:ENST00000571725.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	2.13132	2.436875	2.74243	0.02908	0.00369167	0.127648	0.030936
chrX	49589528	49589603	18695210	0	+	0.56	(0.53,0.59]	chrX	1595037	1	UTR5	UTR5:EXON_MRNA	GAGE2A	ENSG00000189064.8	ENST00000362097.1	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.14885	2.436815	2.72478	0.0262993	0.00324675	0.117164	0.0282494
chr6	139372468	139372563	7995327	0	-	0.536842	(0.53,0.59]	chr6	611348	8	UTR3	UTR3:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.16037	2.436775	2.71318	0.0254312	0.00340745	0.117089	0.0283456
chr3	143122597	143122692	3793712	0	+	0.473684	(0.455,0.49]	chr3	323991	3	UTR3	UTR3:EXON_MRNA	CHST2	ENSG00000175040.6	ENST00000309575.5	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	1.80405	2.436595	3.06914	0.017721400000000002	6.6649e-4	0.0918323	0.00820018
chr2	27037631	27037702	1690633	0	+	0.549296	(0.53,0.59]	chr2	165335	2	CDS	CDS:EXON_MRNA	TMEM214	ENSG00000119777.20	ENST00000321326.11:ENST00000435172.6:ENST00000238788.14:ENST00000404032.7:ENST00000475258.5:ENST00000425720.5:ENST00000460904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.08252	2.43616	2.7898	0.0128364	0.0050389	0.0719798	0.0372588
chr16	24215409	24215508	15599241	0	+	0.474747	(0.455,0.49]	chr16	1236920	7	UTR3	UTR3:EXON_MRNA:INTRON	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	27	139	2	2.4273	2.43611	2.44492	6.9089e-5	2.46869e-5	0.00146432	5.76764e-4
chr17	75332699	75332797	16683334	0	-	0.408163	(0.39,0.42]	chr17	1373194	1	CDS	CDS:EXON_MRNA	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	2.38313	2.436105	2.48908	0.0128066	0.0101318	0.0725185	0.0626311
chr12	50991594	50991672	13330042	0	-	0.487179	(0.455,0.49]	chr12	1046731	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC11A2	ENSG00000110911.17	ENST00000551215.5:ENST00000547688.7:ENST00000644495.1:ENST00000643884.1:ENST00000546636.5:ENST00000547198.5:ENST00000646264.1:ENST00000394904.9:ENST00000262052.9:ENST00000550782.5:ENST00000643123.1:ENST00000646740.1:ENST00000642227.1:ENST00000541174.6:ENST00000545993.7:ENST00000546743.5:ENST00000548554.1:ENST00000551231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	23	2	2.18128	2.435905	2.69053	0.0182983	0.0111696	0.0925808	0.0665375
chr10	78035351	78035417	11140866	0	+	0.439394	(0.42,0.455]	chr10	847074	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000466129.6:ENST00000465692.2:ENST00000475468.6:ENST00000482069.5:ENST00000646254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	93	478	2	2.34009	2.43568	2.53127	5.43049e-6	5.94285e-7	1.81467e-4	2.56223e-5
chr2	231713220	231713313	2426305	0	+	0.301075	(0.29,0.33]	chr2	218683	5	UTR3	UTR3:EXON_MRNA:PRIMIRNA	PTMA:MIR1244-1	ENSG00000187514.17:ENSG00000284378.1	ENST00000448874.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000409683.5:ENST00000412128.1:ENST00000612829.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	22	82	2	2.32389	2.4356400000000002	2.54739	2.89373e-4	3.33129e-5	0.00460301	7.35634e-4
chr1	114705363	114705463	1239459	0	-	0.37	(0.36,0.39]	chr1	121309	10	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	2.39898	2.43546	2.47194	0.00221341	0.00204665	0.0204985	0.0200766
chr4	73142241	73142313	5466655	0	-	0.472222	(0.455,0.49]	chr4	437852	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1:ENST00000639793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.30139	2.435385	2.56938	0.0530131	0.00635313	0.195536	0.0449666
chr9	83686003	83686079	10710615	0	-	0.368421	(0.36,0.39]	chr9	810228	1	CDS	CDS:EXON_MRNA:INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	29	2	2.23949	2.43532	2.63115	0.0245975	0.00261122	0.114841	0.0230705
chrX	16858762	16858849	18971832	0	-	0.356322	(0.33,0.36]	chrX	1615464	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	2.33322	2.43517	2.53712	0.00766322	0.00451613	0.0503696	0.0350603
chr2	87521206	87521284	1932087	0	+	0.435897	(0.42,0.455]	chr2	182285	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CYTOR:RP13-511M20.1	ENSG00000222041.11:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000629257.1:ENST00000437561.1:ENST00000645729.1:ENST00000413202.1:ENST00000643509.1:ENST00000409054.2:ENST00000643321.1	lncRNA	lncRNA	lncRNA	lncRNA	6	32	2	1.96397	2.435065	2.90616	0.0138503	0.00162359	0.0759947	0.0169915
chr19	18437003	18437054	17499344	0	-	0.705882	(0.59,1]	chr19	1468118	1	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	ISYNA1	ENSG00000105655.19	ENST00000338128.13:ENST00000582811.6:ENST00000457269.8:ENST00000582770.6:ENST00000578963.5:ENST00000577916.6:ENST00000577820.5:ENST00000578352.5:ENST00000581800.5:ENST00000583534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	1.88006	2.43459	2.9891200000000002	0.0554008	0.00823979	0.191173	0.0540283
chr6	136259515	136259614	7982292	0	-	0.383838	(0.36,0.39]	chr6	610291	30	UTR3	UTR3:EXON_MRNA:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000533422.5:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	24	2	2.336	2.434555	2.53311	0.0154226	0.00345778	0.0834369	0.0293796
chr9	128180468	128180523	10863858	0	-	0.563636	(0.53,0.59]	chr9	823432	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000476239.5:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	91	2	2.06396	2.4345549999999996	2.80515	6.42453e-4	5.63878e-4	0.00850441	0.007161
chr1	19218809	19218908	877126	0	-	0.434343	(0.42,0.455]	chr1	90423	33	UTR3	UTR3:EXON_MRNA	EMC1	ENSG00000127463.15	ENST00000477853.6:ENST00000375199.7:ENST00000480380.1:ENST00000375208.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr1	40238861	40238960	152780	0	+	0.424242	(0.42,0.455]	chr1	19091	32	CDS	CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr1	54404857	54404930	1029931	0	-	0.424658	(0.42,0.455]	chr1	106865	1	CDS	CDS:UTR5:EXON_MRNA	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr1	154945571	154945665	1305908	0	-	0.446809	(0.42,0.455]	chr1	131551	1	CDS	CDS:EXON_MRNA	PBXIP1	ENSG00000163346.17	ENST00000368465.5:ENST00000368463.8	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr1	172442125	172442224	1369791	0	-	0.454545	(0.42,0.455]	chr1	139583	4	CDS	CDS:EXON_MRNA:INTRON	PIGC	ENSG00000135845.10	ENST00000484368.1:ENST00000367728.1:ENST00000344529.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr11	6609070	6609156	11783071	0	+	0.453488	(0.42,0.455]	chr11	901967	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ILK	ENSG00000166333.14	ENST00000532063.5:ENST00000526711.5:ENST00000537806.5:ENST00000420936.6:ENST00000526114.5:ENST00000299421.9:ENST00000530016.5:ENST00000527121.5:ENST00000528995.5:ENST00000396751.6:ENST00000526318.2:ENST00000528784.5:ENST00000534706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr11	66628746	66628845	11991377	0	+	0.434343	(0.42,0.455]	chr11	922187	22	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr11	114450127	114450203	12150582	0	+	0.421053	(0.42,0.455]	chr11	935913	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	REXO2	ENSG00000076043.11	ENST00000265881.10:ENST00000539275.5:ENST00000544827.5:ENST00000546316.5:ENST00000539788.5:ENST00000538403.5:ENST00000538791.3:ENST00000544507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr15	90501754	90501851	15100813	0	+	0.443299	(0.42,0.455]	chr15	1188226	18	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr16	52655952	52656045	15664631	0	+	0.451613	(0.42,0.455]	chr16	1245029	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-297L17.4:RP11-297L17.6	ENSG00000261261.3:ENSG00000234337.4	ENST00000664440.1:ENST00000567701.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr22	20838614	20838713	18439874	0	-	0.424242	(0.42,0.455]	chr22	1572064	1	CDS_START	CDS_START:CDS:EXON_MRNA	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr6	157909727	157909790	7516396	0	+	0.428571	(0.42,0.455]	chr6	573542	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681183.1:ENST00000681534.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000680095.1:ENST00000680015.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr8	94495730	94495810	9960051	0	-	0.425	(0.42,0.455]	chr8	751258	1	CDS	CDS:UTR3:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000521080.5:ENST00000523263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chrX	30617453	30617533	18640858	0	+	0.425	(0.42,0.455]	chrX	1590567	1	EXON_PSEUDO	EXON_PSEUDO	CKS1BP6	ENSG00000178556.8	ENST00000424932.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	14	2	2.36247	2.4344799999999998	2.50649	0.0462889	0.0302857	0.176878	0.130016
chr1	110342179	110342279	404012	0	+	0.51	(0.49,0.53]	chr1	39591	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBM15	ENSG00000162775.17	ENST00000652747.1:ENST00000618772.4:ENST00000487146.8:ENST00000602849.1:ENST00000369784.9:ENST00000650953.2:ENST00000654015.1:ENST00000652342.2:ENST00000617047.1	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.38683	2.434425	2.48202	0.012654	0.00138956	0.0718207	0.0143689
chr16	70265599	70265662	15997019	0	-	0.507937	(0.49,0.53]	chr16	1284642	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	37	2	2.38683	2.434425	2.48202	0.012654	0.00138956	0.0718207	0.0143689
chr7	134064907	134065002	8545542	0	+	0.368421	(0.36,0.39]	chr7	652016	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000468932.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	2.32678	2.434415	2.54205	0.0193538	0.00253891	0.0943643	0.0227257
chr8	140521853	140521953	10132061	0	-	0.4	(0.39,0.42]	chr8	760954	18	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.38313	2.434345	2.48556	0.0128066	0.00384158	0.0725185	0.0320512
chr12	24814514	24814613	13255701	0	-	0.343434	(0.33,0.36]	chr12	1038842	46	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.00765	2.43419	2.86073	0.0287001	0.0105608	0.128757	0.0644466
chr9	113263413	113263511	10425151	0	+	0.346939	(0.33,0.36]	chr9	784741	31	UTR3	UTR3:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.00765	2.43419	2.86073	0.0287001	0.0105608	0.128757	0.0644466
chr6	85677955	85678054	7826459	0	-	0.30303	(0.29,0.33]	chr6	599652	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-321N4.5:SNHG5	ENSG00000271793.2:ENSG00000203875.13	ENST00000682106.1:ENST00000655847.1:ENST00000673729.1:ENST00000673640.1:ENST00000673769.1:ENST00000658383.1:ENST00000623901.4:ENST00000656441.1:ENST00000657203.1:ENST00000659276.1:ENST00000659725.1:ENST00000668100.1:ENST00000652832.1:ENST00000623163.4:ENST00000650155.1:ENST00000624128.2:ENST00000589187.5:ENST00000673721.1:ENST00000666607.1:ENST00000661011.1:ENST00000658742.1:ENST00000658584.1:ENST00000661487.1:ENST00000666667.1:ENST00000665113.1:ENST00000623650.4:ENST00000671327.1:ENST00000622963.4:ENST00000587692.6:ENST00000669160.1:ENST00000667637.1:ENST00000671650.1:ENST00000656092.1:ENST00000658077.1:ENST00000655116.1:ENST00000670094.1:ENST00000654795.1:ENST00000658919.1:ENST00000660318.1:ENST00000431043.2:ENST00000663073.1:ENST00000667693.1:ENST00000669413.1:ENST00000663448.1:ENST00000667421.1:ENST00000668505.1:ENST00000657339.1:ENST00000420199.6:ENST00000659811.1:ENST00000662914.1:ENST00000664198.1:ENST00000664449.1:ENST00000665270.1:ENST00000669678.1:ENST00000658836.1:ENST00000655834.1:ENST00000623910.4:ENST00000667289.1:ENST00000657398.1:ENST00000659484.1:ENST00000660580.1:ENST00000661360.1:ENST00000662245.1:ENST00000667545.1:ENST00000655881.1:ENST00000663133.1:ENST00000668512.1:ENST00000414002.6:ENST00000427501.6:ENST00000435947.6:ENST00000664396.1:ENST00000669824.1:ENST00000665041.1:ENST00000670410.1:ENST00000369605.9:ENST00000624295.3:ENST00000658871.1:ENST00000453754.5:ENST00000625175.3:ENST00000428833.6:ENST00000623001.4:ENST00000660949.1:ENST00000666912.1:ENST00000667622.1:ENST00000670327.1:ENST00000623267.3:ENST00000425170.2:ENST00000433843.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	18	76	2	1.91717	2.43385	2.95053	0.00520027	2.99084e-6	0.0397656	1.00477e-4
chr13	46126017	46126115	14009600	0	-	0.418367	(0.39,0.42]	chr13	1098488	2	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	17	84	2	2.25378	2.4338249999999997	2.61387	7.48045e-4	4.04077e-5	0.00934936	8.68609e-4
chr21	8393630	8393728	18041466	0	+	0.469388	(0.455,0.49]	chr21	1530861	48	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2555	12528	2	2.25282	2.4337999999999997	2.61478	1.39978e-6	2.5492e-8	5.30768e-5	1.89218e-6
chr10	119073440	119073508	11717591	0	-	0.367647	(0.36,0.39]	chr10	893860	1	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.29974	2.43378	2.56782	0.00926291	0.00659672	0.0586162	0.0460001
chr2	219216363	219216462	3191232	0	-	0.555556	(0.53,0.59]	chr2	280832	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-803J6.1:ABCB6	ENSG00000284820.1:ENSG00000115657.14	ENST00000446716.5:ENST00000295750.5:ENST00000265316.9:ENST00000448398.5:ENST00000417678.5:ENST00000452545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	49	2	1.99466	2.43365	2.87264	0.0049448	0.00168899	0.0367601	0.0175515
chr20	45640485	45640583	17986375	0	-	0.55102	(0.53,0.59]	chr20	1523961	1	EXON_PSEUDO	EXON_PSEUDO	RPS2P7	ENSG00000235508.3	ENST00000447334.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	35	2	2.15403	2.433605	2.71318	0.0118065	0.00340745	0.0686664	0.0283456
chr8	38128374	38128458	9291669	0	+	0.547619	(0.53,0.59]	chr8	710629	2	CDS	CDS:UTR3:EXON_MRNA	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000518186.1:ENST00000524247.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.15403	2.433605	2.71318	0.0118065	0.00340745	0.0686664	0.0283456
chr20	47210760	47210860	17993116	0	-	0.56	(0.53,0.59]	chr20	1524927	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.22207	2.4334100000000003	2.64475	0.00910511	0.00453071	0.0576716	0.0351187
chr2	135911437	135911493	2898356	0	-	0.392857	(0.39,0.42]	chr2	258591	2	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000478212.5:ENST00000489964.5:ENST00000422708.3:ENST00000491481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	30	2	2.16078	2.433345	2.70591	0.0185716	0.00370921	0.0932453	0.0302984
chr9	136419043	136419106	10512273	0	+	0.428571	(0.42,0.455]	chr9	796214	1	CDS	CDS:EXON_MRNA	PMPCA	ENSG00000165688.12	ENST00000371717.8:ENST00000399219.7:ENST00000462616.1:ENST00000444897.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	36	2	1.99701	2.43332	2.86963	0.0235036	4.62477e-4	0.111072	0.00613242
chr1	42179709	42179809	964205	0	-	0.52	(0.49,0.53]	chr1	101504	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.3044	2.433115	2.56183	0.0509448	0.0261296	0.181793	0.118976
chr10	100356431	100356531	11219423	0	+	0.52	(0.49,0.53]	chr10	853921	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.3044	2.433115	2.56183	0.0509448	0.0261296	0.181793	0.118976
chr16	30423790	30423878	15914681	0	-	0.5	(0.49,0.53]	chr16	1275401	3	UTR3	UTR3:EXON_MRNA	DCTPP1	ENSG00000179958.10	ENST00000319285.5:ENST00000567983.1:ENST00000678016.1	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.3044	2.433115	2.56183	0.0509448	0.0261296	0.181793	0.118976
chr22	19909487	19909586	18435081	0	-	0.494949	(0.49,0.53]	chr22	1571076	101	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.3044	2.433115	2.56183	0.0509448	0.0261296	0.181793	0.118976
chr4	1241429	1241528	5279077	0	-	0.50505	(0.49,0.53]	chr4	424903	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000506180.5:ENST00000514210.5:ENST00000514495.1:ENST00000515399.5:ENST00000513420.1:ENST00000510568.1:ENST00000515690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	15	2	2.3044	2.433115	2.56183	0.0509448	0.0261296	0.181793	0.118976
chr7	54419639	54419738	8284837	0	+	0.494949	(0.49,0.53]	chr7	630941	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	LINC01445:SLC25A5P3	ENSG00000231427.6:ENSG00000213673.3	ENST00000659445.1:ENST00000444439.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	2	15	2	2.3044	2.433115	2.56183	0.0509448	0.0261296	0.181793	0.118976
chr4	105485289	105485388	5026464	0	+	0.545455	(0.53,0.59]	chr4	409127	7	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	91	2	2.37973	2.433055	2.48638	4.40625e-4	2.31037e-4	0.00593537	0.00382996
chr12	119718779	119718861	13577111	0	-	0.52439	(0.49,0.53]	chr12	1068310	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000678494.1:ENST00000612548.4:ENST00000392520.2:ENST00000537607.5:ENST00000676833.1:ENST00000543324.2:ENST00000544588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	15	2	2.38097	2.432925	2.48488	0.0425419	0.032052	0.167547	0.133433
chr5	39105549	39105649	6546192	0	-	0.51	(0.49,0.53]	chr5	507259	4	UTR3	UTR3:EXON_MRNA	FYB1	ENSG00000082074.19	ENST00000646045.2:ENST00000512982.4:ENST00000351578.12	protein_coding	protein_coding	protein_coding	protein_coding	2	15	2	2.38097	2.432925	2.48488	0.0425419	0.032052	0.167547	0.133433
chr2	85318414	85318513	2770094	0	-	0.434343	(0.42,0.455]	chr2	245643	5	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.95205	2.43289	2.91373	0.0248244	0.00892357	0.113644	0.0567495
chrX	136873642	136873741	19250709	0	-	0.424242	(0.42,0.455]	chrX	1635446	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000496459.2:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	1.95205	2.43289	2.91373	0.0248244	0.00892357	0.113644	0.0567495
chr11	73677405	73677503	12457783	0	-	0.479592	(0.455,0.49]	chr11	968371	19	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.40664	2.43278	2.45892	0.0123662	8.02402e-4	0.0705839	0.00943079
chr15	72760418	72760518	15370968	0	-	0.46	(0.455,0.49]	chr15	1214586	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ADPGK	ENSG00000159322.18	ENST00000456471.3:ENST00000311669.12:ENST00000569534.5:ENST00000567941.5:ENST00000563907.5:ENST00000569517.5:ENST00000567733.1:ENST00000565814.1:ENST00000569058.1:ENST00000566509.5:ENST00000562286.1:ENST00000562823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	2.35644	2.43274	2.50904	0.0310515	0.00555877	0.131262	0.0405952
chrX	154478815	154478915	19278462	0	-	0.77	(0.59,1]	chrX	1638449	1	CDS_START	CDS_START:CDS:EXON_MRNA	LAGE3	ENSG00000196976.7	ENST00000357360.4	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.36593	2.432665	2.4994	0.0333573	0.0141097	0.137922	0.077233
chr5	137753337	137753427	6858093	0	-	0.711111	(0.59,1]	chr5	524501	2	CDS	CDS:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.81066	2.43243	3.0542	0.0369806	0.00663549	0.145401	0.0456243
chr16	30065759	30065843	15628380	0	+	0.702381	(0.59,1]	chr16	1239763	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	57	614	2	2.40095	2.4323550000000003	2.46376	4.22501e-5	2.94062e-5	9.90672e-4	6.67979e-4
chr7	128862855	128862904	8522579	0	+	0.632653	(0.59,1]	chr7	650486	1	UTR5	UTR5:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.38614	2.432255	2.47837	0.0128707	0.00970721	0.0725185	0.0608296
chr1	26272020	26272071	108833	0	+	0.490196	(0.49,0.53]	chr1	12948	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5:ENST00000468163.1:ENST00000491670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.30264	2.432235	2.56183	0.0261296	0.0165402	0.118976	0.087611
chr17	45098382	45098467	16237689	0	+	0.494118	(0.49,0.53]	chr17	1315005	1	CDS	CDS:UTR3:EXON_MRNA	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000590310.2:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000543908.5:ENST00000590114.6:ENST00000592654.3:ENST00000588455.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	20	2	2.30264	2.432235	2.56183	0.0261296	0.0165402	0.118976	0.087611
chr2	210432817	210432916	3145320	0	-	0.525253	(0.49,0.53]	chr2	277990	17	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.30264	2.432235	2.56183	0.0261296	0.0165402	0.118976	0.087611
chr19	6413273	6413359	17442172	0	-	0.523256	(0.49,0.53]	chr19	1456765	3	UTR3	UTR3:EXON_MRNA	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	2.04938	2.43215	2.81492	0.00271214	6.31846e-4	0.023726	0.00837621
chr17	59839811	59839911	16296978	0	+	0.4	(0.39,0.42]	chr17	1321863	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1:ENST00000591782.1:ENST00000588617.1:ENST00000592790.1:ENST00000587470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	2.18155	2.4321099999999998	2.68267	0.0283931	0.00125229	0.127654	0.0133064
chr6	43548360	43548460	7708342	0	-	0.47	(0.455,0.49]	chr6	591527	2	CDS	CDS:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000513451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.35515	2.4320950000000003	2.50904	0.0310515	0.0140117	0.131262	0.0767536
chrX	46440531	46440622	19057497	0	-	0.461538	(0.455,0.49]	chrX	1619621	10	EXON_PSEUDO	EXON_PSEUDO	GAPDHP65	ENSG00000235587.2	ENST00000425487.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	19	2	2.35515	2.4320950000000003	2.50904	0.0310515	0.0140117	0.131262	0.0767536
chr15	72585842	72585940	15018757	0	+	0.5	(0.49,0.53]	chr15	1180122	27	UTR3	UTR3:EXON_MRNA	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000563310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.30189	2.4318600000000004	2.56183	0.0261296	0.00685554	0.118976	0.0471063
chr15	90501560	90501657	15100811	0	+	0.43299	(0.42,0.455]	chr15	1188226	16	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.19674	2.431855	2.66697	0.0254904	0.0190326	0.117089	0.0958835
chr2	74214339	74214437	1891742	0	+	0.418367	(0.39,0.42]	chr2	179209	2	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000470592.5:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	55	2	2.34748	2.431575	2.51567	0.00178189	3.21874e-4	0.0182044	0.00461043
chr6	53291775	53291869	7740410	0	-	0.43617	(0.42,0.455]	chr6	594391	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11:ENST00000485336.5:ENST00000465983.5:ENST00000486973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	95	2	1.75395	2.43153	3.10911	0.00489312	2.64917e-6	0.0376595	9.11128e-5
chr2	176337664	176337754	2225167	0	+	0.277778	[0,0.29]	chr2	203312	1	UTR3	UTR3:EXON_MRNA	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000443241.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	23	2	2.3458	2.431525	2.51725	0.0116272	0.00319723	0.0685835	0.0267978
chr7	72942728	72942827	8330202	0	+	0.646465	(0.59,1]	chr7	634054	10	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.17889	2.431405	2.68392	0.025085	0.0202468	0.116848	0.0984041
chr1	110951478	110951573	1223722	0	-	0.4	(0.39,0.42]	chr1	119615	3	CDS	CDS:EXON_MRNA:INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000494675.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.99911	2.431395	2.86368	0.0477207	0.0101619	0.17993	0.0627153
chr12	62325871	62325933	12913718	0	+	0.403226	(0.39,0.42]	chr12	1006409	1	CDS	CDS:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10:ENST00000549237.5:ENST00000546694.1:ENST00000552997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	1.99911	2.431395	2.86368	0.0477207	0.0101619	0.17993	0.0627153
chr6	31828337	31828433	7116690	0	+	0.666667	(0.59,1]	chr6	546209	4	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	17	186	2	2.1713	2.431215	2.69113	9.99413e-4	1.24737e-4	0.0118878	0.00216542
chr21	8395606	8395682	18041486	0	+	0.513158	(0.49,0.53]	chr21	1530862	1	EXON_SMALL	EXON_SMALL:INTRON	CH507-528H12.1:RNA5-8SN3	ENSG00000280441.3:ENSG00000275215.1	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1:ENST00000613359.1	rRNA	rRNA	rRNA:lncRNA	rRNA:lncRNA	683	3615	2	2.41598	2.43117	2.44636	3.44008e-7	3.29227e-7	1.80175e-5	1.55344e-5
chr7	139376061	139376156	8565835	0	+	0.421053	(0.42,0.455]	chr7	653633	1	CDS	CDS:UTR3:EXON_MRNA	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	1.58516	2.431115	3.27707	0.0389398	0.00207325	0.158547	0.0194849
chr7	56061797	56061849	8290538	0	+	0.5	(0.49,0.53]	chr7	631511	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5:ENST00000462133.5:ENST00000494736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	74	2	2.34715	2.43107	2.51499	8.61126e-4	1.90426e-4	0.010586	0.00303348
chr22	30334496	30334593	18469653	0	-	0.628866	(0.59,1]	chr22	1575821	27	UTR3	UTR3:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.87297	2.431045	2.9891200000000002	0.0308113	0.00823979	0.130016	0.0540283
chrX	74590941	74591040	19117512	0	-	0.323232	(0.29,0.33]	chrX	1626323	81	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11:ENST00000349225.2	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.18913	2.43095	2.67277	0.0255386	0.00629431	0.117089	0.044701
chr5	10264877	10264971	5874672	0	+	0.382979	(0.36,0.39]	chr5	461895	2	UTR3	UTR3:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000515676.5:ENST00000506600.1:ENST00000511995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	58	2	2.28873	2.430755	2.57278	5.85449e-4	5.21752e-4	0.00793746	0.00674485
chr1	7781134	7781233	29771	0	+	0.474747	(0.455,0.49]	chr1	3443	16	UTR3	UTR3:EXON_MRNA	VAMP3	ENSG00000049245.13	ENST00000054666.11	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr1	113119232	113119329	413616	0	+	0.474227	(0.455,0.49]	chr1	40843	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6:ENST00000492207.5:ENST00000466161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr11	214759	214848	11755967	0	+	0.47191	(0.455,0.49]	chr11	897559	4	UTR3	UTR3:EXON_MRNA	RIC8A	ENSG00000177963.15	ENST00000526104.6:ENST00000325207.9:ENST00000527696.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr11	118522766	118522866	12159160	0	+	0.49	(0.455,0.49]	chr11	937154	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2A	ENSG00000118058.23	ENST00000389506.10:ENST00000534358.8:ENST00000648565.1:ENST00000527839.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr12	109109869	109109969	13078613	0	+	0.47	(0.455,0.49]	chr12	1019347	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UNG	ENSG00000076248.11	ENST00000242576.7:ENST00000336865.6:ENST00000539287.5:ENST00000446767.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr15	89835514	89835614	15436668	0	-	0.46	(0.455,0.49]	chr15	1221026	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AP3S2:ARPIN-AP3S2	ENSG00000157823.17:ENSG00000250021.7	ENST00000336418.9:ENST00000398333.7:ENST00000423566.6:ENST00000558926.1:ENST00000558011.5:ENST00000560940.5:ENST00000560771.5:ENST00000557999.5:ENST00000558806.5:ENST00000561410.5:ENST00000559162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr17	49826017	49826117	16260173	0	+	0.47	(0.455,0.49]	chr17	1318067	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000435742.2:ENST00000513171.5:ENST00000514540.5:ENST00000513980.5:ENST00000512616.5:ENST00000509794.5:ENST00000513075.1:ENST00000503101.1:ENST00000503635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr2	86482536	86482615	1927357	0	+	0.455696	(0.455,0.49]	chr2	181652	2	CDS	CDS:UTR3:EXON_MRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr20	53576988	53577085	18015911	0	-	0.474227	(0.455,0.49]	chr20	1526885	14	CDS	CDS:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr3	39096092	39096189	3422814	0	+	0.474227	(0.455,0.49]	chr3	297713	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WDR48	ENSG00000114742.14	ENST00000302313.10:ENST00000420940.6:ENST00000466405.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr7	157192646	157192739	8635981	0	+	0.473118	(0.455,0.49]	chr7	659695	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	UBE3C:RPS27AP12	ENSG00000009335.18:ENSG00000225224.1	ENST00000348165.10:ENST00000429552.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr8	23261399	23261499	9229395	0	+	0.49	(0.455,0.49]	chr8	706439	9	UTR3	UTR3:EXON_MRNA	CHMP7	ENSG00000147457.14	ENST00000397677.6:ENST00000313219.8:ENST00000517325.5:ENST00000523091.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr9	129120512	129120586	10483480	0	+	0.486486	(0.455,0.49]	chr9	791354	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	PTPA	ENSG00000119383.21	ENST00000358994.9:ENST00000455292.6:ENST00000357197.8:ENST00000348141.9:ENST00000347048.8:ENST00000337738.6:ENST00000355007.7:ENST00000393370.7:ENST00000414331.5:ENST00000452489.6:ENST00000453358.5:ENST00000417504.5:ENST00000440346.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.35214	2.43059	2.50904	0.0455621	0.0310515	0.168044	0.131262
chr21	31659665	31659717	18093395	0	+	0.634615	(0.59,1]	chr21	1533870	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	75	2	1.70472	2.43052	3.15632	0.0236159	6.43048e-4	0.109018	0.00850474
chr14	52004516	52004615	14284139	0	+	0.444444	(0.42,0.455]	chr14	1116800	1	UTR3	UTR3:EXON_MRNA	RTRAF	ENSG00000087302.9	ENST00000261700.8:ENST00000556760.5:ENST00000553362.1:ENST00000553479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	56	2	1.722	2.430255	3.13851	0.0179091	2.78182e-5	0.0918323	6.37204e-4
chr17	78172572	78172668	16367726	0	+	0.552083	(0.53,0.59]	chr17	1329566	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589711.1:ENST00000588282.5:ENST00000589168.1:ENST00000590201.1:ENST00000592456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	73	2	1.63267	2.4300550000000003	3.22744	0.0170789	1.57108e-5	0.0902695	4.3971e-4
chr1	46285422	46285520	981889	0	-	0.571429	(0.53,0.59]	chr1	103528	2	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000617760.4:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr10	80518274	80518374	11152028	0	+	0.58	(0.53,0.59]	chr10	847928	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000372158.6:ENST00000372164.7:ENST00000341863.10:ENST00000616406.1:ENST00000265450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr16	2165856	2165936	15491124	0	+	0.5625	(0.53,0.59]	chr16	1226958	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr17	49054174	49054272	16256688	0	+	0.55102	(0.53,0.59]	chr17	1317683	49	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr2	130120867	130120947	2873650	0	-	0.5625	(0.53,0.59]	chr2	257005	1	SS3_PROX	SS3_PROX:INTRON	POTEF	ENSG00000196604.13	ENST00000409914.7	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr20	56367673	56367772	17834379	0	+	0.535354	(0.53,0.59]	chr20	1507875	15	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr3	118394941	118395041	4391993	0	-	0.55	(0.53,0.59]	chr3	364478	3071	INTRON	INTRON	RP11-384F7.1	ENSG00000243276.6	ENST00000482142.5	lncRNA	lncRNA	lncRNA	lncRNA	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr4	17614754	17614813	4734289	0	+	0.542373	(0.53,0.59]	chr4	392782	1	CDS	CDS:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000506409.1:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr9	35708412	35708484	10639575	0	-	0.569444	(0.53,0.59]	chr9	805042	2	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.34461	2.429805	2.515	0.0457008	0.0292633	0.168044	0.129773
chr19	12810070	12810139	17237443	0	+	0.565217	(0.53,0.59]	chr19	1420807	1	CDS	CDS:UTR3:EXON_MRNA	THSD8:RNASEH2A	ENSG00000284491.3:ENSG00000104889.7	ENST00000639767.2:ENST00000221486.6:ENST00000646769.1:ENST00000593017.2:ENST00000643757.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr19	41292338	41292424	17334180	0	+	0.534884	(0.53,0.59]	chr19	1436757	2	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000599719.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000600596.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr19	41305854	41305867	17334324	0	+	0.538462	(0.53,0.59]	chr19	1436795	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr19	49154079	49154175	17605445	0	-	0.541667	(0.53,0.59]	chr19	1483739	8	CDS	CDS:EXON_MRNA	HRC	ENSG00000130528.12	ENST00000252825.9:ENST00000595625.1	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr20	46354881	46354965	17990022	0	-	0.535714	(0.53,0.59]	chr20	1524523	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10:ENST00000243896.6:ENST00000372227.5:ENST00000317734.12:ENST00000480329.5:ENST00000487729.5:ENST00000484318.5:ENST00000481809.1:ENST00000420518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr22	19377868	19377967	18432845	0	-	0.585859	(0.53,0.59]	chr22	1570769	1	CDS	CDS:UTR3:EXON_MRNA	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr3	49015097	49015188	3459297	0	+	0.549451	(0.53,0.59]	chr3	301943	4	CDS	CDS:UTR3:EXON_MRNA	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr5	32380074	32380172	6519148	0	-	0.55102	(0.53,0.59]	chr5	504961	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000510369.5:ENST00000507465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr7	72926412	72926477	8330029	0	+	0.538462	(0.53,0.59]	chr7	634008	1	CDS_START	CDS_START:CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chrX	40062745	40062826	19045013	0	-	0.555556	(0.53,0.59]	chrX	1618727	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BCOR	ENSG00000183337.18	ENST00000413905.6:ENST00000378463.5:ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000442018.6:ENST00000673391.1:ENST00000427012.3:ENST00000406200.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	17	2	2.35511	2.4297899999999997	2.50447	0.0445399	0.0301162	0.172163	0.130016
chr6	129578015	129578115	7955640	0	-	0.36	(0.33,0.36]	chr6	608194	20	UTR3	UTR3:EXON_MRNA	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.69981	2.429785	3.15976	0.0370662	0.00437542	0.145667	0.0340502
chr6	75240330	75240385	7800192	0	-	0.490909	(0.49,0.53]	chr6	597624	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	COX7A2	ENSG00000112695.12	ENST00000370081.6:ENST00000684430.1:ENST00000370089.6:ENST00000509698.6:ENST00000459637.2:ENST00000460985.1:ENST00000472311.6:ENST00000377978.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	58	2	2.39075	2.429605	2.46846	0.00224283	4.21053e-4	0.0213415	0.00571742
chr15	90905844	90905930	15103593	0	+	0.511628	(0.49,0.53]	chr15	1188695	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000560192.5:ENST00000360468.7:ENST00000559132.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	44	2	2.16131	2.429385	2.69746	0.00380414	0.00226803	0.0317723	0.0209546
chr2	96283276	96283352	2790348	0	-	0.526316	(0.49,0.53]	chr2	248724	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	44	2	2.16131	2.429385	2.69746	0.00380414	0.00226803	0.0317723	0.0209546
chr11	61966688	61966788	12406752	0	-	0.53	(0.49,0.53]	chr11	960804	3	SS5_PROX	SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	1.99044	2.42927	2.8681	0.0435903	0.00175299	0.170594	0.0171299
chr11	118375062	118375145	12157626	0	+	0.493976	(0.49,0.53]	chr11	936869	3	CDS	CDS:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	1.99044	2.42927	2.8681	0.0435903	0.00175299	0.170594	0.0171299
chr6	34588379	34588478	7674084	0	-	0.535354	(0.53,0.59]	chr6	588118	12	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.0693	2.429145	2.78899	0.0160468	0.00245784	0.0860154	0.0221765
chr12	98515867	98515967	13036528	0	+	0.59	(0.53,0.59]	chr12	1014931	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	35	2	2.29789	2.428955	2.56002	0.00674768	0.00634904	0.0468196	0.0446708
chr14	69380373	69380455	14687499	0	-	0.353659	(0.33,0.36]	chr14	1150256	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERH	ENSG00000100632.11	ENST00000557016.6:ENST00000216520.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	41	2	2.14668	2.428825	2.71097	0.00265444	6.6741e-4	0.023248	0.00867533
chr6	34757840	34757940	7125497	0	+	0.45	(0.42,0.455]	chr6	548358	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRPC	ENSG00000124562.10	ENST00000244520.10:ENST00000374018.5:ENST00000374017.3:ENST00000474635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	2.15137	2.42874	2.70611	0.0123864	0.00397496	0.07101	0.0322851
chr1	46316680	46316776	178678	0	+	0.375	(0.36,0.39]	chr1	23178	2	UTR3	UTR3:EXON_MRNA	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	101	2	2.30283	2.428665	2.5545	4.36378e-4	1.72227e-5	0.00624085	4.33531e-4
chr6	31782782	31782845	7662443	0	-	0.571429	(0.53,0.59]	chr6	585291	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000474643.5:ENST00000461328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	48	2	1.73953	2.42866	3.11779	0.0146694	5.11883e-4	0.0800115	0.00664583
chr17	46756691	46756788	16246444	0	+	0.298969	(0.29,0.33]	chr17	1315970	10	UTR3	UTR3:EXON_MRNA	NSF	ENSG00000073969.18	ENST00000398238.8	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.36742	2.42814	2.48886	0.0147368	0.0055888	0.0801529	0.0419759
chr17	82080845	82080922	16710687	0	-	0.662338	(0.59,1]	chr17	1378142	3	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	6	72	2	2.14957	2.428125	2.70668	0.0126053	0.0014458	0.0719957	0.0155288
chr11	61799725	61799824	12405898	0	-	0.373737	(0.36,0.39]	chr11	960580	2	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	28	116	2	2.24197	2.4280299999999997	2.61409	9.62031e-5	1.94743e-5	0.00191028	4.75021e-4
chr5	138556415	138556515	6862355	0	-	0.44	(0.42,0.455]	chr5	525188	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000512328.1:ENST00000507115.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	77	2	1.98156	2.42786	2.87416	0.00232558	3.04637e-5	0.0220596	6.83179e-4
chr14	93397138	93397234	14773705	0	-	0.395833	(0.39,0.42]	chr14	1157079	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000202306.1	ENST00000365436.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	6	35	2	1.87119	2.427835	2.98448	0.0373134	2.45186e-4	0.152293	0.00370692
chr5	10434275	10434374	5875540	0	+	0.30303	(0.29,0.33]	chr5	462061	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000511802.5:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	57	2	2.33272	2.427665	2.52261	0.00296866	8.18396e-5	0.0264052	0.00154806
chr12	62335590	62335690	12913820	0	+	0.3	(0.29,0.33]	chr12	1006428	5	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	54	2	1.99395	2.427625	2.8613	0.0131526	1.84919e-5	0.0733631	4.55132e-4
chr6	31816719	31816814	7116670	0	+	0.652632	(0.59,1]	chr6	546204	10	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	13	139	2	1.57107	2.4274	3.28373	0.0163842	2.89873e-5	0.0869402	7.24986e-4
chr14	30650564	30650650	14200217	0	+	0.383721	(0.36,0.39]	chr14	1112765	1	CDS	CDS:UTR3:EXON_MRNA	SCFD1	ENSG00000092108.22	ENST00000678760.1:ENST00000677690.1:ENST00000678124.1:ENST00000678716.1:ENST00000678402.1:ENST00000679153.1:ENST00000678516.1:ENST00000678802.1:ENST00000679096.1:ENST00000679102.1:ENST00000678475.1:ENST00000676509.1:ENST00000676750.1:ENST00000679165.1:ENST00000676658.1:ENST00000678399.1:ENST00000678185.1:ENST00000677027.1:ENST00000678006.1:ENST00000677413.1:ENST00000555259.5:ENST00000554437.6:ENST00000676834.1:ENST00000678858.1:ENST00000553693.6:ENST00000676914.1:ENST00000676465.1:ENST00000676812.1:ENST00000678669.1:ENST00000676520.1:ENST00000676876.1:ENST00000677617.1:ENST00000676954.1:ENST00000677456.1:ENST00000678735.1:ENST00000679342.1:ENST00000678637.1:ENST00000469043.2:ENST00000677176.1:ENST00000557076.6:ENST00000677637.1:ENST00000677974.1:ENST00000458591.7:ENST00000484733.6:ENST00000556768.5:ENST00000544052.6:ENST00000463622.6:ENST00000676674.1:ENST00000677340.1:ENST00000311943.11:ENST00000679075.1:ENST00000678396.1:ENST00000676473.1:ENST00000396629.6:ENST00000678579.1:ENST00000678104.1:ENST00000554776.5:ENST00000556534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.82984	2.4269049999999996	3.02397	0.0234753	0.00674398	0.108434	0.0461258
chr4	169697188	169697279	5217958	0	+	0.351648	(0.33,0.36]	chr4	420911	1	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.4164	2.4268650000000003	2.43733	0.011989	0.00277951	0.0700473	0.0248466
chr22	41246122	41246218	18518889	0	-	0.614583	(0.59,1]	chr22	1581098	15	UTR3	UTR3:EXON_MRNA	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.67735	2.426755	3.17616	0.0534288	0.00434232	0.184995	0.0339139
chr2	48377714	48377813	1788992	0	+	0.292929	(0.29,0.33]	chr2	172754	24	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.16	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.14085	2.42645	2.71205	0.0117968	0.00120479	0.0686664	0.0129255
chr7	131487628	131487728	8535479	0	+	0.43	(0.42,0.455]	chr7	651709	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000458153.5:ENST00000498778.5:ENST00000468830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	31	2	1.66182	2.4263000000000003	3.19078	0.0204671	0.00310864	0.0993047	0.0274272
chr1	28743888	28743986	118421	0	+	0.377551	(0.36,0.39]	chr1	14542	15	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	2.38564	2.426065	2.46649	0.0476159	7.95961e-4	0.17993	0.00935982
chr12	103937721	103937806	13056811	0	+	0.294118	(0.29,0.33]	chr12	1017319	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	86	446	2	1.74729	2.42604	3.10479	0.00128637	8.11674e-10	0.0140881	8.70782e-8
chr1	40071812	40071905	151978	0	+	0.376344	(0.36,0.39]	chr1	19043	4	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	9	43	2	2.2842	2.4260349999999997	2.56787	0.0049656	4.4684e-4	0.0381176	0.00601445
chr5	149509878	149509953	6910398	0	-	0.333333	(0.33,0.36]	chr5	528500	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5:ENST00000503350.6:ENST00000606299.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	29	2	2.00765	2.4253299999999998	2.84301	0.0287001	5.76955e-4	0.128757	0.00731854
chr18	31547629	31547727	16809176	0	+	0.387755	(0.36,0.39]	chr18	1386482	10	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.38564	2.4251449999999997	2.46465	0.0476159	0.00159698	0.17993	0.015942
chr10	84152348	84152441	11164622	0	+	0.387097	(0.36,0.39]	chr10	848162	1	UTR3	UTR3:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	18	79	2	2.34954	2.4248000000000003	2.50006	3.23397e-4	9.07757e-5	0.00498075	0.00167735
chr17	81860471	81860547	16709684	0	-	0.789474	(0.59,1]	chr17	1377728	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000681031.1:ENST00000680846.1:ENST00000679366.1:ENST00000681020.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680847.1:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	113	2	2.31902	2.424745	2.53047	0.00219962	7.54387e-4	0.0210117	0.0090193
chr22	19176037	19176129	18431153	0	-	0.619565	(0.59,1]	chr22	1570486	6	UTR3	UTR3:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	90	2	2.35041	2.424505	2.4986	0.00349906	0.00179105	0.0296494	0.0173898
chr17	8206523	8206623	16432134	0	-	0.46	(0.455,0.49]	chr17	1340338	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	AURKB	ENSG00000178999.13	ENST00000316199.10:ENST00000585124.6:ENST00000534871.5:ENST00000584972.5:ENST00000578549.5:ENST00000580998.5:ENST00000578753.1:ENST00000577833.5:ENST00000581511.5:ENST00000580390.5:ENST00000584561.1:ENST00000582368.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	1.92777	2.42438	2.92099	0.0286531	0.00138399	0.128685	0.0143168
chr19	4839001	4839096	17434011	0	-	0.547368	(0.53,0.59]	chr19	1455546	8	UTR3	UTR3:EXON_MRNA	PLIN3	ENSG00000105355.9	ENST00000221957.9:ENST00000592528.5:ENST00000589163.5:ENST00000585479.5	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.0693	2.424255	2.77921	0.0160468	0.0132865	0.0860154	0.0740932
chr5	139330188	139330287	6249107	0	+	0.343434	(0.33,0.36]	chr5	487023	9	UTR3	UTR3:EXON_MRNA	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000502499.5:ENST00000394805.8:ENST00000618441.5:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	85	2	2.36601	2.42423	2.48245	2.39934e-4	5.27111e-5	0.00394917	0.00107537
chr6	35580035	35580128	7676345	0	-	0.451613	(0.42,0.455]	chr6	588437	1	CDS	CDS:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.34191	2.4242	2.50649	0.0302857	0.0159091	0.130016	0.0854674
chr12	120198853	120198926	13579754	0	-	0.493151	(0.49,0.53]	chr12	1068811	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	150	2	2.10899	2.424175	2.73936	3.41118e-4	4.20061e-6	0.00518901	1.34033e-4
chr1	20749802	20749882	883170	0	-	0.4875	(0.455,0.49]	chr1	91355	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000491748.1:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	2.26324	2.424015	2.58479	0.00868189	0.00200187	0.0558093	0.0189555
chr9	91922065	91922165	10735021	0	-	0.34	(0.33,0.36]	chr9	812027	350	INTRON	INTRON	ROR2	ENSG00000169071.15	ENST00000375715.5:ENST00000375708.4:ENST00000495386.5:ENST00000546883.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	1.82394	2.42394	3.02394	0.0494504	8.89743e-4	0.18557	0.0102057
chr22	40826537	40826637	18517889	0	-	0.41	(0.39,0.42]	chr22	1580938	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8:ENST00000620312.4	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.38186	2.423795	2.46573	0.00601449	0.00349672	0.0434483	0.0288123
chr1	235111771	235111868	1560090	0	-	0.247423	[0,0.29]	chr1	156012	26	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	32	116	2	1.87353	2.423745	2.97396	0.00169124	3.43576e-7	0.0175714	1.60752e-5
chrX	65741348	65741445	18716379	0	+	0.391753	(0.39,0.42]	chrX	1596885	16	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	22	107	2	1.62906	2.423625	3.21819	0.00626452	5.49725e-7	0.0445415	2.40337e-5
chr8	47976778	47976876	9316301	0	+	0.561224	(0.53,0.59]	chr8	713600	1	UTR3	UTR3:EXON_MRNA	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000521151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	67	2	1.15487	2.423555	3.69224	0.0492369	1.78865e-5	0.184979	4.45448e-4
chr1	32333141	32333238	128530	0	+	0.515464	(0.49,0.53]	chr1	15954	2	UTR3	UTR3:EXON_MRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	41	2	2.30147	2.423525	2.54558	0.0033367	0.0024326	0.0278556	0.0228485
chr17	40408491	40408560	16538965	0	-	0.391304	(0.39,0.42]	chr17	1354661	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	15	64	2	1.93169	2.423385	2.91508	0.00146071	4.41174e-4	0.0148863	0.0062930699999999996
chr5	163442044	163442143	6343408	0	+	0.393939	(0.39,0.42]	chr5	494001	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000514367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	41	2	1.9926	2.42338	2.85416	0.00367258	0.00225069	0.0300803	0.021386
chr6	163570909	163571009	7540836	0	+	0.4	(0.39,0.42]	chr6	575649	3	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8:ENST00000537883.5:ENST00000541696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	95	2	2.36651	2.42338	2.48025	1.79109e-4	9.07058e-5	0.00312723	0.00167668
chr2	37201641	37201724	1742639	0	+	0.337349	(0.33,0.36]	chr2	169565	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000470216.1:ENST00000402297.6:ENST00000406711.5:ENST00000392061.6:ENST00000397226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	1.8112	2.4233599999999997	3.03552	0.0257865	0.0012034	0.116737	0.0134762
chr20	56368168	56368267	17834384	0	+	0.424242	(0.42,0.455]	chr20	1507875	20	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.03532	2.4233450000000003	2.81137	0.040947	0.0120386	0.163285	0.0700876
chr8	47849153	47849228	9816261	0	-	0.453333	(0.42,0.455]	chr8	742639	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.03532	2.4233450000000003	2.81137	0.040947	0.0120386	0.163285	0.0700876
chr8	116847599	116847691	10035165	0	-	0.423913	(0.42,0.455]	chr8	755412	1	CDS	CDS:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7:ENST00000523986.5:ENST00000517749.1:ENST00000518055.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.03532	2.4233450000000003	2.81137	0.040947	0.0120386	0.163285	0.0700876
chr12	52901158	52901219	13336955	0	-	0.409836	(0.39,0.42]	chr12	1048623	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000547031.5:ENST00000549176.1:ENST00000546826.5:ENST00000547176.3:ENST00000548998.5:ENST00000546900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	2.10425	2.42334	2.74243	0.00810106	0.00369167	0.0528637	0.030936
chr14	21233952	21234022	14520759	0	-	0.514286	(0.49,0.53]	chr14	1137268	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	42	2	1.48824	2.423325	3.35841	0.0375277	1.37225e-4	0.14721	0.00253405
chr17	47649918	47649999	16251621	0	+	0.691358	(0.59,1]	chr17	1316630	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9	protein_coding	protein_coding	protein_coding	protein_coding	7	81	2	2.34108	2.423325	2.50557	0.00648714	0.00154292	0.0454205	0.0156458
chr12	69272875	69272974	12941729	0	+	0.343434	(0.33,0.36]	chr12	1008771	35	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	39	2	1.81451	2.423155	3.0318	0.0120734	1.96415e-4	0.0695634	0.00311664
chrX	48523698	48523771	18691802	0	+	0.369863	(0.36,0.39]	chrX	1594129	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EBP:LL0XNC01-30I4.1	ENSG00000147155.11:ENSG00000286268.1	ENST00000276096.10:ENST00000498425.1:ENST00000651615.1:ENST00000495186.6:ENST00000446158.5:ENST00000414061.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	91	2	2.25456	2.42287	2.59118	5.90211e-4	2.31991e-5	0.00799891	5.49997e-4
chr9	35706833	35706900	10639554	0	-	0.58209	(0.53,0.59]	chr9	805027	2	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	2.20093	2.42284	2.64475	0.00507963	0.00453071	0.037544	0.0351187
chr15	95825562	95825656	15131640	0	+	0.510638	(0.49,0.53]	chr15	1190264	5	EXON_LNCRNA	EXON_LNCRNA	RP11-61O11.1	ENSG00000275016.5	ENST00000612595.2:ENST00000667774.1:ENST00000656202.1	lncRNA	lncRNA	lncRNA	lncRNA	6	37	2	2.03065	2.422785	2.81492	0.0189484	6.31846e-4	0.0958835	0.00837621
chr21	33912288	33912343	18224353	0	-	0.4	(0.39,0.42]	chr21	1546669	1	CDS	CDS:EXON_MRNA	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	52	2	2.38186	2.4227600000000002	2.46366	0.00601449	2.65476e-4	0.0434483	0.00396352
chr20	49058463	49058548	17811469	0	+	0.423529	(0.42,0.455]	chr20	1506476	1	CDS_START	CDS_START:CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	2.15996	2.4227049999999997	2.68545	0.00365851	0.00135767	0.0299719	0.0146849
chr1	1048099	1048188	2355	0	+	0.707865	(0.59,1]	chr1	535	2	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.32384	2.42267	2.5215	0.032241	0.0157639	0.135671	0.0851539
chr16	30665305	30665401	15630711	0	+	0.75	(0.59,1]	chr16	1240377	1	CDS	CDS:EXON_MRNA:INTRON	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000287468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.32384	2.42267	2.5215	0.032241	0.0157639	0.135671	0.0851539
chr1	37493370	37493469	946787	0	-	0.292929	(0.29,0.33]	chr1	99426	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	29	2	2.34203	2.4226599999999996	2.50329	0.010113	0.00142661	0.0626311	0.0146595
chr7	135928243	135928342	9085563	0	-	0.434343	(0.42,0.455]	chr7	693646	16	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	51	266	2	1.55976	2.42265	3.28554	0.00237822	6.60603e-9	0.0224508	5.40254e-7
chr6	41935391	41935483	7701864	0	-	0.576087	(0.53,0.59]	chr6	590673	6	UTR3	UTR3:EXON_MRNA	CCND3	ENSG00000112576.13	ENST00000511642.5:ENST00000616010.4:ENST00000372991.9:ENST00000372988.8:ENST00000415497.6:ENST00000372987.8:ENST00000414200.6:ENST00000510503.5	protein_coding	protein_coding	protein_coding	protein_coding	5	37	2	2.16037	2.422345	2.68432	0.0254312	0.00118971	0.117089	0.0128045
chr16	28403782	28403841	15905242	0	-	0.677966	(0.59,1]	chr16	1273530	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.8502	2.4222900000000003	2.99438	0.0334531	0.00776449	0.140296	0.050813
chr1	19112695	19112781	876000	0	-	0.616279	(0.59,1]	chr1	90017	3	CDS	CDS:UTR3:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding	5	59	2	1.90752	2.42225	2.93698	0.0282297	0.0015925	0.127287	0.0159023
chr1	155137988	155138043	483035	0	+	0.436364	(0.42,0.455]	chr1	50527	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC50A1	ENSG00000169241.19	ENST00000484157.5:ENST00000490770.5:ENST00000475824.6:ENST00000368401.6:ENST00000622581.4:ENST00000490276.5:ENST00000303343.12:ENST00000368404.9:ENST00000650403.1:ENST00000368405.7:ENST00000488609.5:ENST00000484027.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	56	2	1.9435500000000001	2.42218	2.90081	0.00507333	1.31286e-4	0.0389088	0.00226535
chr7	12357347	12357431	8683233	0	-	0.47619	(0.455,0.49]	chr7	663979	2	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	2.27492	2.4221500000000002	2.56938	0.0193827	0.00635313	0.0943643	0.0449666
chr12	111486760	111486824	13540198	0	-	0.4375	(0.42,0.455]	chr12	1065302	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000552323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	1.93033	2.4220300000000003	2.91373	0.0505055	0.00892357	0.181202	0.0567495
chrX	24788584	24788681	19007600	0	-	0.443299	(0.42,0.455]	chrX	1617324	3	EXON_PSEUDO	EXON_PSEUDO	EEF1B2P3	ENSG00000232472.1	ENST00000447718.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	18	2	1.93033	2.4220300000000003	2.91373	0.0505055	0.00892357	0.181202	0.0567495
chr12	53411731	53411829	12886185	0	+	0.377551	(0.36,0.39]	chr12	1002329	6	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	9	43	2	2.42114	2.421895	2.42265	0.00564641	5.72524e-4	0.0422191	0.00726471
chr11	10797049	10797144	12272529	0	-	0.263158	[0,0.29]	chr11	948968	1	UTR3	UTR3:EXON_MRNA	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	12	2	2.40395	2.421825	2.4397	0.0388194	0.0210081	0.149227	0.101116
chr7	106250584	106250684	8977864	0	-	0.3	(0.29,0.33]	chr7	687059	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000680482.1:ENST00000463871.2:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000680616.1:ENST00000681887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	28	2	2.35474	2.4218	2.48886	0.0055888	0.00297618	0.0419759	0.0254769
chr8	47970510	47970601	9316223	0	+	0.472527	(0.455,0.49]	chr8	713563	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000518680.1:ENST00000517709.1:ENST00000648554.1:ENST00000519470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	73	2	2.33911	2.42176	2.50441	5.94441e-4	2.04429e-4	0.00804997	0.00320878
chr12	101716727	101716812	13048867	0	+	0.4	(0.39,0.42]	chr12	1016516	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	49	2	2.34349	2.421615	2.49974	0.0169272	2.11447e-4	0.0890655	0.00328766
chr18	12986577	12986671	16764012	0	+	0.223404	[0,0.29]	chr18	1382771	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	1.94841	2.42159	2.89477	0.0427374	0.00179424	0.168094	0.0174091
chr5	168548693	168548793	6968904	0	-	0.27	[0,0.29]	chr5	532791	3	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.94841	2.42159	2.89477	0.0427374	0.00179424	0.168094	0.0174091
chr7	107160260	107160357	8455221	0	+	0.257732	[0,0.29]	chr7	645853	8	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	9	31	2	2.33679	2.421285	2.50578	0.00335866	0.00151355	0.0280262	0.0161238
chr16	68183302	68183366	15714835	0	+	0.375	(0.36,0.39]	chr16	1251026	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NFATC3	ENSG00000072736.19	ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000575270.5:ENST00000346183.8:ENST00000539828.6:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.38564	2.4211	2.45656	0.0476159	0.0100637	0.17993	0.0624019
chr3	47714414	47714490	4163057	0	-	0.381579	(0.36,0.39]	chr3	348436	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.38564	2.4211	2.45656	0.0476159	0.0100637	0.17993	0.0624019
chr4	17628151	17628250	4734429	0	+	0.353535	(0.33,0.36]	chr4	392804	26	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	1.80608	2.4208	3.03552	0.0416784	0.0012034	0.157445	0.0134762
chr1	171557419	171557510	537265	0	+	0.56044	(0.53,0.59]	chr1	57662	3	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	23	144	2	2.22535	2.42064	2.61593	2.01499e-4	3.00202e-5	0.00342288	6.77985e-4
chr17	77214702	77214799	16362215	0	+	0.412371	(0.39,0.42]	chr17	1329013	8	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.22707	2.420495	2.61392	0.00574688	0.0017565	0.0426551	0.0171455
chr4	6641729	6641821	4704239	0	+	0.478261	(0.455,0.49]	chr4	390529	1	UTR3	UTR3:EXON_MRNA	MRFAP1	ENSG00000179010.15	ENST00000617365.4:ENST00000320912.8:ENST00000382581.5:ENST00000507420.1:ENST00000512914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	43	2	1.70534	2.4201699999999997	3.135	0.0239221	1.04065e-4	0.109927	0.002022
chr1	145996266	145996344	1270288	0	-	0.397436	(0.39,0.42]	chr1	125553	1	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	53	224	2	1.9008100000000001	2.42006	2.93931	2.03455e-4	2.72355e-7	0.00320041	1.4763e-5
chr8	101201641	101201741	9976890	0	-	0.45	(0.42,0.455]	chr8	752832	1	CDS_START	CDS_START:CDS:EXON_MRNA	ZNF706	ENSG00000120963.12	ENST00000520984.5:ENST00000311212.9:ENST00000519744.5:ENST00000517844.5:ENST00000519103.1:ENST00000520347.5:ENST00000519882.5:ENST00000521272.5:ENST00000518336.5:ENST00000523146.1:ENST00000519916.1:ENST00000523922.1:ENST00000520454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	39	2	2.33282	2.41998	2.50714	0.00677333	0.00122903	0.0462932	0.0130835
chr11	14469487	14469563	12281675	0	-	0.434211	(0.42,0.455]	chr11	949607	3	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	1.7601	2.419975	3.07985	0.0312663	1.37948e-4	0.132093	0.00233981
chr16	67100661	67100760	15708080	0	+	0.363636	(0.36,0.39]	chr16	1249605	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000290858.11:ENST00000412916.7:ENST00000652116.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.20444	2.419825	2.63521	0.0237257	0.00633242	0.109365	0.0446708
chr1	206587669	206587768	682397	0	+	0.323232	(0.29,0.33]	chr1	68949	8	UTR3	UTR3:EXON_MRNA	RASSF5	ENSG00000266094.8	ENST00000579436.7:ENST00000580449.5:ENST00000581503.6:ENST00000636182.1:ENST00000577571.5:ENST00000581888.1:ENST00000579942.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	13	2	2.38576	2.419745	2.45373	0.0439193	0.0156405	0.163572	0.084273700000000007
chr8	21974721	21974774	9221802	0	+	0.320755	(0.29,0.33]	chr8	704937	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	2.38576	2.419745	2.45373	0.0439193	0.0156405	0.163572	0.084273700000000007
chrX	54565093	54565193	18704399	0	+	0.33	(0.29,0.33]	chrX	1596125	46	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.38576	2.419745	2.45373	0.0439193	0.0156405	0.163572	0.084273700000000007
chr7	135587854	135587923	8552701	0	+	0.42029	(0.42,0.455]	chr7	652729	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.87159	2.419735	2.96788	0.0214479	0.00109784	0.102998	0.0119666
chr14	52774590	52774690	14286043	0	+	0.33	(0.29,0.33]	chr14	1117027	36	UTR3	UTR3:EXON_MRNA	STYX	ENSG00000198252.12	ENST00000354586.5:ENST00000442123.6	protein_coding	protein_coding	protein_coding	protein_coding	10	32	2	1.50286	2.41972	3.33658	0.035536	1.69227e-4	0.147135	0.00275464
chr5	33467897	33467991	5927527	0	+	0.340426	(0.33,0.36]	chr5	464457	3	UTR3	UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000507716.5:ENST00000503422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	26	2	1.36994	2.41951	3.46908	0.0479853	0.00114872	0.17535800000000001	0.0130528
chr4	56450618	56450702	4848632	0	+	0.440476	(0.42,0.455]	chr4	399453	1	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3:ENST00000508554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	78	2	2.14108	2.419435	2.69779	0.00130937	5.67322e-5	0.0143025	0.00114271
chrX	24077267	24077363	18616685	0	+	0.614583	(0.59,1]	chrX	1589843	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	44	472	2	2.41161	2.41929	2.42697	1.07581e-4	3.20775e-5	0.00207122	7.1146e-4
chr8	47820868	47820943	9815964	0	-	0.546667	(0.53,0.59]	chr8	742567	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	42	2	2.14205	2.4192	2.69635	0.0123179	0.00112127	0.070688	0.0128408
chr17	41867511	41867610	16543743	0	-	0.363636	(0.36,0.39]	chr17	1356443	7	UTR3	UTR3:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.16717	2.419135	2.6711	0.0152504	0.00434596	0.0828908	0.0335517
chr10	74074822	74074903	11117194	0	+	0.419753	(0.39,0.42]	chr10	846214	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	49	2	1.78357	2.4190899999999997	3.05461	0.00474988	8.55091e-4	0.0361846	0.0105173
chr8	123015585	123015682	10055912	0	-	0.505155	(0.49,0.53]	chr8	756440	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DERL1	ENSG00000136986.10	ENST00000259512.9:ENST00000405944.7:ENST00000524119.1:ENST00000419562.6:ENST00000519018.5:ENST00000523036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	2.13501	2.41904	2.70307	0.0287874	0.00363585	0.128869	0.0298137
chr15	64088686	64088768	15339212	0	-	0.402439	(0.39,0.42]	chr15	1210846	1	CDS	CDS:UTR3:EXON_MRNA	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	2.34349	2.418875	2.49426	0.0169272	0.0085468	0.0890655	0.0551026
chr3	44751141	44751241	4149070	0	-	0.4	(0.39,0.42]	chr3	346666	25	UTR3	UTR3:EXON_MRNA:INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	2.34349	2.418875	2.49426	0.0169272	0.0085468	0.0890655	0.0551026
chrX	85088864	85088963	18751841	0	+	0.383838	(0.36,0.39]	chrX	1600208	13	UTR3	UTR3:EXON_MRNA	APOOL	ENSG00000155008.15	ENST00000373173.7:ENST00000613473.1	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.38112	2.4188400000000003	2.45656	0.0100637	0.0031815	0.0624019	0.0279343
chr7	158733330	158733427	9159301	0	-	0.360825	(0.36,0.39]	chr7	699685	25	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.81435	2.4187499999999997	3.02315	0.0302191	8.65481e-4	0.129773	0.0100741
chr12	118032042	118032138	13108826	0	+	0.395833	(0.39,0.42]	chr12	1023088	9	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RFC5	ENSG00000111445.14	ENST00000454402.7:ENST00000392542.6:ENST00000543153.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.13132	2.418615	2.70591	0.02908	0.0185716	0.127648	0.0932453
chr16	22284983	22285082	15589644	0	+	0.414141	(0.39,0.42]	chr16	1235909	11	UTR3	UTR3:EXON_MRNA	EEF2K	ENSG00000103319.12	ENST00000263026.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.13132	2.418615	2.70591	0.02908	0.0185716	0.127648	0.0932453
chr7	30612095	30612170	8203673	0	+	0.4	(0.39,0.42]	chr7	625806	1	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	17	2	2.13132	2.418615	2.70591	0.02908	0.0185716	0.127648	0.0932453
chr8	53795742	53795839	9831911	0	-	0.402062	(0.39,0.42]	chr8	743842	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATP6V1H	ENSG00000047249.18	ENST00000359530.7:ENST00000355221.7:ENST00000520188.5:ENST00000523343.1:ENST00000396774.6:ENST00000524164.5:ENST00000523426.1:ENST00000521900.5:ENST00000522849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.13132	2.418615	2.70591	0.02908	0.0185716	0.127648	0.0932453
chr8	63187448	63187547	9370484	0	+	0.414141	(0.39,0.42]	chr8	715891	13	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4:ENST00000518373.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.13132	2.418615	2.70591	0.02908	0.0185716	0.127648	0.0932453
chr19	804828	804883	17189509	0	+	0.436364	(0.42,0.455]	chr19	1411027	1	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	PTBP1:MIR4745	ENSG00000011304.22:ENSG00000284361.1	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2:ENST00000621737.4:ENST00000577608.1:ENST00000585956.5:ENST00000587136.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	17	79	2	1.73602	2.4184	3.10078	0.00418968	1.38541e-5	0.0328662	3.94563e-4
chr5	69175034	69175113	6019343	0	+	0.468354	(0.455,0.49]	chr5	471243	3	CDS	CDS:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	11	58	2	2.24865	2.4184	2.58815	0.00240656	2.15612e-4	0.0217576	0.00361208
chr1	212103137	212103236	701715	0	+	0.292929	(0.29,0.33]	chr1	71180	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DTL	ENSG00000143476.18	ENST00000542077.5:ENST00000366991.5:ENST00000475419.5:ENST00000496442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	2.24226	2.4181049999999997	2.59395	0.0306054	0.0249836	0.130226	0.114013
chr10	68693695	68693794	11091140	0	+	0.292929	(0.29,0.33]	chr10	842935	20	UTR3	UTR3:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.24226	2.4181049999999997	2.59395	0.0306054	0.0249836	0.130226	0.114013
chr10	113916198	113916298	11263026	0	+	0.33	(0.29,0.33]	chr10	858164	78	UTR3	UTR3:EXON_MRNA	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.24226	2.4181049999999997	2.59395	0.0306054	0.0249836	0.130226	0.114013
chr5	151810901	151811001	6299835	0	+	0.33	(0.29,0.33]	chr5	491960	55	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	2.24226	2.4181049999999997	2.59395	0.0306054	0.0249836	0.130226	0.114013
chr16	31189119	31189172	15633453	0	+	0.471698	(0.455,0.49]	chr16	1241203	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2:ENST00000564766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	47	2	1.90433	2.41793	2.93153	0.0185466	1.08756e-4	0.0932453	0.00193746
chr10	63623642	63623741	11071628	0	+	0.363636	(0.36,0.39]	chr10	842295	29	UTR3	UTR3:EXON_MRNA	REEP3	ENSG00000165476.14	ENST00000373758.5	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.06832	2.417905	2.76749	0.0122123	0.00287858	0.0702898	0.0247002
chr11	10763800	10763879	11799343	0	+	0.367089	(0.36,0.39]	chr11	903534	3	CDS	CDS:EXON_MRNA	CTR9	ENSG00000198730.9	ENST00000361367.7	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.20444	2.417795	2.63115	0.0245975	0.0237257	0.114841	0.109365
chr21	8210591	8210690	18041123	0	+	0.454545	(0.42,0.455]	chr21	1530812	13	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2446	11720	2	2.25972	2.417655	2.57559	1.4019700000000001e-06	3.35607e-8	5.31423e-5	2.42183e-6
chr9	69072959	69073057	10291435	0	+	0.346939	(0.33,0.36]	chr9	775005	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-16N10.2:FXN	ENSG00000285130.2:ENSG00000165060.15	ENST00000642330.1:ENST00000642889.1:ENST00000645088.1:ENST00000643352.1:ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000646862.1:ENST00000644977.1:ENST00000643765.1:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	17	2	2.31697	2.41747	2.51797	0.0303594	0.00966431	0.130016	0.0606263
chr9	98086981	98087079	10759995	0	-	0.510204	(0.49,0.53]	chr9	814726	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRIM14	ENSG00000106785.15	ENST00000375098.7:ENST00000478530.1:ENST00000341469.7:ENST00000342043.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	36	2	2.21702	2.417395	2.61777	0.00959574	0.00172617	0.0603269	0.0178146
chr1	186313872	186313970	1411710	0	-	0.234694	[0,0.29]	chr1	142761	21	UTR3	UTR3:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.15488	2.417205	2.67953	0.0436536	0.0046416	0.170594	0.0354333
chr14	75133224	75133322	14709058	0	-	0.27551	[0,0.29]	chr14	1152525	19	UTR3	UTR3:EXON_MRNA	TMED10	ENSG00000170348.9	ENST00000303575.9	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.15488	2.417205	2.67953	0.0436536	0.0046416	0.170594	0.0354333
chr8	58582672	58582765	9351281	0	+	0.344086	(0.33,0.36]	chr8	715167	11	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000523483.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	10	46	2	2.31697	2.417185	2.5174	0.00966431	1.97784e-4	0.0606263	0.00313694
chr1	40995916	40995992	156552	0	+	0.473684	(0.455,0.49]	chr1	19691	1	CDS	CDS:EXON_MRNA	CTPS1	ENSG00000171793.16	ENST00000480420.6:ENST00000650070.2:ENST00000649864.1:ENST00000648914.1:ENST00000648020.1:ENST00000649124.1:ENST00000498694.2:ENST00000648801.1:ENST00000463285.6:ENST00000479480.6:ENST00000372616.1:ENST00000650634.1:ENST00000649215.1:ENST00000486889.2:ENST00000463423.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr1	113973512	113973611	418210	0	+	0.484848	(0.455,0.49]	chr1	41199	1	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000369561.8:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr1	150471451	150471550	468007	0	+	0.464646	(0.455,0.49]	chr1	47283	10	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr12	56283816	56283857	13349968	0	-	0.463415	(0.455,0.49]	chr12	1051035	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000542324.6:ENST00000546621.5:ENST00000546891.5:ENST00000548849.5:ENST00000549221.5:ENST00000546930.5:ENST00000548041.5:ENST00000550734.5:ENST00000551936.5:ENST00000551253.5:ENST00000547449.1:ENST00000547912.1:ENST00000552688.5:ENST00000551473.5:ENST00000547298.5:ENST00000551137.5:ENST00000550655.5:ENST00000551968.5:ENST00000550159.5:ENST00000551430.6:ENST00000552222.5:ENST00000547283.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr15	42532198	42532294	14892406	0	+	0.489583	(0.455,0.49]	chr15	1170513	8	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr17	49805362	49805445	16259953	0	+	0.457831	(0.455,0.49]	chr17	1318008	1	CDS	CDS:EXON_MRNA:INTRON	KAT7	ENSG00000136504.13	ENST00000675278.1:ENST00000259021.9:ENST00000454930.6:ENST00000509773.5:ENST00000510819.5:ENST00000424009.6:ENST00000509124.5:ENST00000435742.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr19	16551215	16551313	17491569	0	-	0.489796	(0.455,0.49]	chr19	1466498	15	UTR3	UTR3:EXON_MRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000593812.1:ENST00000595753.6:ENST00000652421.1:ENST00000409648.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr21	43971387	43971438	18137522	0	+	0.470588	(0.455,0.49]	chr21	1538541	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr5	62393954	62394047	6611690	0	-	0.462366	(0.455,0.49]	chr5	511049	1	CDS	CDS:UTR3:EXON_MRNA	DIMT1	ENSG00000086189.11	ENST00000651114.1:ENST00000199320.9:ENST00000680062.1:ENST00000680214.1:ENST00000680785.1:ENST00000681672.1:ENST00000509182.2:ENST00000681272.1:ENST00000680960.1:ENST00000679751.1:ENST00000681192.1:ENST00000681393.1:ENST00000680267.1:ENST00000681244.1:ENST00000506390.5:ENST00000514911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr6	142218497	142218543	7442999	0	+	0.478261	(0.455,0.49]	chr6	569617	1	CDS	CDS:EXON_MRNA	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.30139	2.417125	2.53286	0.0530131	0.0282409	0.195536	0.124386
chr1	27404723	27404822	908750	0	-	0.373737	(0.36,0.39]	chr1	95011	6	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	8	38	2	2.413	2.41707	2.42114	0.00564641	0.00106686	0.0422191	0.0118238
chr1	634028	634128	823371	0	-	0.43	(0.42,0.455]	chr1	81486	10	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	20	98	2	2.28716	2.41692	2.54668	1.63294e-4	9.8144e-5	0.00291121	0.00177661
chr19	18323020	18323112	17499236	0	-	0.815217	(0.59,1]	chr19	1468082	1	UTR5	UTR5:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6:ENST00000594828.7:ENST00000593564.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	62	2	1.67735	2.416835	3.15632	0.0534288	6.43048e-4	0.184995	0.00850474
chr9	35719212	35719282	10639711	0	-	0.585714	(0.53,0.59]	chr9	805120	3	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.3186	2.4168000000000003	2.515	0.0292633	0.00299541	0.129773	0.0256157
chr1	160348998	160349060	496701	0	+	0.483871	(0.455,0.49]	chr1	53446	1	CDS	CDS:UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000437169.5:ENST00000294785.10:ENST00000421914.5:ENST00000438008.5:ENST00000467837.5:ENST00000491332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	1.98188	2.4168	2.85172	0.0226804	0.010864	0.105116	0.0643837
chr6	30704016	30704115	7659037	0	-	0.515152	(0.49,0.53]	chr6	584223	5	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000489540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	70	2	2.20659	2.416765	2.62694	6.60942e-4	5.92952e-4	0.00866622	0.00744861
chr17	42125334	42125424	16545935	0	-	0.577778	(0.53,0.59]	chr17	1356948	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	38	2	2.0404	2.416755	2.79311	0.0362529	6.84253e-4	0.148525	0.00836671
chr10	70423240	70423340	11100463	0	+	0.48	(0.455,0.49]	chr10	844350	16	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	12	62	2	1.62813	2.416735	3.20534	0.0152764	1.74734e-5	0.0828908	4.38078e-4
chr20	57498054	57498153	18021538	0	-	0.313131	(0.29,0.33]	chr20	1527368	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6	protein_coding	protein_coding	protein_coding	protein_coding	9	33	2	2.03156	2.416585	2.80161	0.00415667	0.00334813	0.0325842	0.0279463
chr4	24529685	24529770	5358718	0	-	0.447059	(0.42,0.455]	chr4	429821	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DHX15	ENSG00000109606.13	ENST00000510645.5:ENST00000336812.5:ENST00000508032.5:ENST00000512903.1:ENST00000513036.5:ENST00000508368.1:ENST00000504279.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	1.86513	2.416505	2.96788	0.0357107	0.00109784	0.147298	0.0119666
chr6	31730941	31731003	7662110	0	-	0.596774	(0.59,1]	chr6	585120	1	CDS	CDS:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	14	154	2	2.30564	2.41632	2.527	8.02302e-4	4.70154e-4	0.00997959	0.00621531
chr11	3705199	3705277	12238025	0	-	0.461538	(0.455,0.49]	chr11	945561	1	CDS	CDS:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	2.26324	2.41631	2.56938	0.00868189	0.00635313	0.0558093	0.0449666
chr1	47280821	47280918	985994	0	-	0.412371	(0.39,0.42]	chr1	104121	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	38	2	2.34349	2.41624	2.48899	0.0169272	6.84309e-4	0.0890655	0.00836671
chr14	102041671	102041734	14495810	0	+	0.587302	(0.53,0.59]	chr14	1133237	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000556139.2:ENST00000645085.1:ENST00000556499.3:ENST00000644888.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	2.37399	2.4162150000000002	2.45844	0.0126178	0.00930921	0.0717599	0.0587563
chr21	43981087	43981187	18137621	0	+	0.55	(0.53,0.59]	chr21	1538553	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	29	2	2.37399	2.4162150000000002	2.45844	0.0126178	0.00930921	0.0717599	0.0587563
chr14	77510287	77510386	14717339	0	-	0.313131	(0.29,0.33]	chr14	1153348	44	UTR3	UTR3:EXON_MRNA	SPTLC2	ENSG00000100596.7	ENST00000216484.7	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	1.71387	2.416145	3.11842	0.0355849	1.21194e-4	0.147262	0.00210755
chr6	31817006	31817102	7116673	0	+	0.614583	(0.59,1]	chr6	546204	13	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	13	134	2	1.90553	2.416125	2.92672	0.00404124	2.10249e-4	0.032143	0.00355792
chr1	629828	629923	470	0	+	0.4	(0.39,0.42]	chr1	105	3	EXON_PSEUDO	EXON_PSEUDO	MTND2P28	ENSG00000225630.1	ENST00000457540.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	38	166	2	2.20419	2.41609	2.62799	4.66208e-5	7.63057e-6	0.00107127	2.20396e-4
chr12	110339648	110339721	13085835	0	+	0.438356	(0.42,0.455]	chr12	1020520	3	CDS	CDS:UTR3:EXON_MRNA	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000548169.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	66	2	2.0198	2.41595	2.8121	0.00505434	4.69141e-5	0.0387703	9.7437e-4
chr12	67305202	67305302	12934058	0	+	0.44	(0.42,0.455]	chr12	1008094	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	47	2	2.32442	2.41578	2.50714	0.00182252	0.00122903	0.0183913	0.0130835
chr12	54237163	54237263	13342898	0	-	0.39	(0.36,0.39]	chr12	1049602	58	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	11	51	2	2.03744	2.41569	2.79394	0.00563874	1.10976e-4	0.0422191	0.00197469
chr1	224389235	224389335	1526431	0	-	0.42	(0.39,0.42]	chr1	152610	42	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2:ENST00000486652.5:ENST00000678555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	2.3342	2.4156050000000002	2.49701	0.0339607	0.00157538	0.141431	0.015761
chr1	112913990	112914077	1232316	0	-	0.402299	(0.39,0.42]	chr1	120457	1	CDS	CDS:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	32	172	2	1.91112	2.41541	2.9197	0.00132692	2.51643e-7	0.0144372	1.23584e-5
chr11	319756	319837	12225819	0	-	0.592593	(0.59,1]	chr11	943136	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	IFITM3	ENSG00000142089.17	ENST00000399808.5:ENST00000680209.1:ENST00000681304.1:ENST00000681840.1:ENST00000680932.1:ENST00000679382.1:ENST00000681198.1:ENST00000680920.1:ENST00000679793.1:ENST00000531688.2:ENST00000602735.2:ENST00000526811.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	8	91	2	2.29488	2.4152050000000003	2.53553	0.00407435	0.00134354	0.0324137	0.014003
chr18	46091740	46091840	17103882	0	-	0.45	(0.42,0.455]	chr18	1404380	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000589611.1:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	85	2	2.0929	2.4152050000000003	2.73751	0.00170991	2.57763e-5	0.0176835	5.97534e-4
chr1	157134079	157134179	1318885	0	-	0.37	(0.36,0.39]	chr1	134406	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ETV3	ENSG00000117036.12	ENST00000368192.9:ENST00000326786.4	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr10	21670448	21670533	10961182	0	+	0.364706	(0.36,0.39]	chr10	834114	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000652258.1:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1:ENST00000468309.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr10	63214262	63214360	11531884	0	-	0.367347	(0.36,0.39]	chr10	878549	9	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JMJD1C	ENSG00000171988.19	ENST00000639129.1:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr17	2682388	2682486	16086747	0	+	0.367347	(0.36,0.39]	chr17	1293760	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000675390.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr4	173314030	173314103	5233659	0	+	0.369863	(0.36,0.39]	chr4	421224	2	CDS	CDS:EXON_MRNA	GALNT7	ENSG00000109586.12	ENST00000265000.9:ENST00000505308.5:ENST00000506317.1:ENST00000503213.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr5	53963787	53963887	6576698	0	-	0.38	(0.36,0.39]	chr5	509095	118	INTRON	INTRON	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr6	4133571	4133671	7575898	0	-	0.37	(0.36,0.39]	chr6	578166	1	CDS_START	CDS_START:CDS:EXON_MRNA	ECI2	ENSG00000198721.13	ENST00000380125.6:ENST00000496241.6:ENST00000380120.6:ENST00000361538.6:ENST00000380118.8:ENST00000464057.5:ENST00000478266.6:ENST00000465828.5:ENST00000464583.5:ENST00000495548.1:ENST00000489086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr7	106906185	106906285	8454020	0	+	0.39	(0.36,0.39]	chr7	645783	9	UTR3	UTR3:EXON_MRNA	PIK3CG	ENSG00000105851.11	ENST00000496166.6:ENST00000359195.3	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chrX	20127907	20128006	18985429	0	-	0.383838	(0.36,0.39]	chrX	1616648	35	UTR3	UTR3:EXON_MRNA	EIF1AX	ENSG00000173674.11	ENST00000379607.10	protein_coding	protein_coding	protein_coding	protein_coding	2	12	2	2.38564	2.4150549999999997	2.44447	0.0476159	0.0364669	0.17993	0.145024
chr13	54440790	54440877	14036974	0	-	0.517241	(0.49,0.53]	chr13	1101195	2	EXON_PSEUDO	EXON_PSEUDO	RPL13AP25	ENSG00000136149.6	ENST00000484130.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	95	2	1.59806	2.414965	3.23187	0.0164861	9.88401e-7	0.0873033	3.95181e-5
chr1	109311555	109311655	1219445	0	-	0.58	(0.53,0.59]	chr1	118935	21	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	4	30	2	2.0289	2.41475	2.8006	0.0373899	0.00233666	0.146698	0.0221314
chr1	43362194	43362253	164238	0	+	0.559322	(0.53,0.59]	chr1	20869	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000482046.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.0404	2.414695	2.78899	0.0362529	0.00245784	0.148525	0.0221765
chr5	139683394	139683492	6250958	0	+	0.55102	(0.53,0.59]	chr5	487158	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1:ENST00000505812.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	30	2	2.0404	2.414695	2.78899	0.0362529	0.00245784	0.148525	0.0221765
chr7	27458260	27458358	8739177	0	-	0.55102	(0.53,0.59]	chr7	667100	2	EXON_PSEUDO	EXON_PSEUDO	EIF4HP1	ENSG00000233830.2	ENST00000453115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	30	2	2.0404	2.414695	2.78899	0.0362529	0.00245784	0.148525	0.0221765
chr14	81177140	81177240	14730344	0	-	0.35	(0.33,0.36]	chr14	1153987	18	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.07736	2.4146400000000003	2.75192	0.0442037	0.00318114	0.172163	0.0267094
chr7	137879505	137879602	9097068	0	-	0.340206	(0.33,0.36]	chr7	694031	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CREB3L2	ENSG00000182158.15	ENST00000330387.11:ENST00000616381.4:ENST00000620715.4	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.07736	2.4146400000000003	2.75192	0.0442037	0.00318114	0.172163	0.0267094
chr4	24554870	24554943	5358983	0	-	0.369863	(0.36,0.39]	chr4	429864	3	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	9	40	2	2.04221	2.414595	2.78698	0.00653435	3.67531e-4	0.0456317	0.00552242
chr10	79354637	79354737	11148695	0	+	0.34	(0.33,0.36]	chr10	847447	9	UTR3	UTR3:EXON_MRNA	PPIF	ENSG00000108179.14	ENST00000225174.8	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.31026	2.414565	2.51887	0.0519897	0.0358636	0.18423900000000001	0.147298
chr3	49362609	49362626	4174101	0	-	0.352941	(0.33,0.36]	chr3	350902	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	11	2	2.31026	2.414565	2.51887	0.0519897	0.0358636	0.18423900000000001	0.147298
chr6	96553798	96553897	7281661	0	+	0.343434	(0.33,0.36]	chr6	561255	4	UTR3	UTR3:EXON_MRNA	UFL1	ENSG00000014123.10	ENST00000369278.5	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.31026	2.414565	2.51887	0.0519897	0.0358636	0.18423900000000001	0.147298
chr9	125153672	125153742	10855821	0	-	0.357143	(0.33,0.36]	chr9	822330	3	CDS	CDS:EXON_MRNA	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5	protein_coding	protein_coding	protein_coding	protein_coding	2	11	2	2.31026	2.414565	2.51887	0.0519897	0.0358636	0.18423900000000001	0.147298
chr2	121765267	121765367	2034652	0	+	0.44	(0.42,0.455]	chr2	192256	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TSN	ENSG00000211460.12	ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	30	2	1.71996	2.4143499999999998	3.10874	0.0542346	5.40397e-4	0.199653	0.00688813
chr1	225921931	225922005	1531302	0	-	0.662162	(0.59,1]	chr1	153181	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RP4-559A3.7:PYCR2:MIR6741	ENSG00000255835.1:ENSG00000143811.19:ENSG00000284519.1	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000466127.1:ENST00000446534.1:ENST00000618782.1:ENST00000489681.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	5	58	2	2.11642	2.41432	2.71222	0.0144884	0.00398753	0.0790431	0.031888
chr20	62388456	62388466	17861424	0	+	0.3	(0.29,0.33]	chr20	1510060	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	49	2	1.83055	2.414295	2.99804	0.0348758	1.3028e-5	0.144642	3.42469e-4
chr19	16133470	16133565	17247597	0	+	0.410526	(0.39,0.42]	chr19	1423028	13	UTR3	UTR3:EXON_MRNA	RAB8A	ENSG00000167461.12	ENST00000300935.8	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.27012	2.4142799999999998	2.55844	0.0263695	0.00945558	0.117164	0.0594007
chr14	54427516	54427615	14635494	0	-	0.313131	(0.29,0.33]	chr14	1146393	41	UTR3	UTR3:EXON_MRNA	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	45	2	2.21564	2.41426	2.61288	0.00138819	8.6617e-4	0.0149724	0.0100799
chr1	6186379	6186476	842298	0	-	0.546392	(0.53,0.59]	chr1	84886	15	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	69	2	2.10304	2.41391	2.72478	0.00324675	8.37015e-4	0.0282494	0.00981083
chr6	32830353	32830440	7667150	0	-	0.643678	(0.59,1]	chr6	586785	2	CDS	CDS:EXON_MRNA	XXbac-BPG246D15.9:TAP2	ENSG00000250264.1:ENSG00000204267.16	ENST00000452392.2:ENST00000652259.1:ENST00000620123.4:ENST00000374897.4:ENST00000464100.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	38	2	2.32455	2.4138849999999996	2.50322	0.0520547	0.00863444	0.193787	0.0556009
chr13	21146865	21146927	13633484	0	+	0.387097	(0.36,0.39]	chr13	1074763	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SAP18	ENSG00000150459.12	ENST00000621421.4:ENST00000382533.8:ENST00000607003.5:ENST00000492245.5:ENST00000450573.5:ENST00000467636.1:ENST00000471009.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	33	2	2.06832	2.41373	2.75914	0.0122123	8.69953e-4	0.0702898	0.0101157
chr2	96274722	96274818	2790246	0	-	0.302083	(0.29,0.33]	chr2	248677	5	UTR3	UTR3:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	2.18913	2.41363	2.63813	0.00803229	0.00629431	0.0528968	0.044701
chr10	6427432	6427528	11354608	0	-	0.4375	(0.42,0.455]	chr10	866019	4	UTR3	UTR3:EXON_MRNA	PRKCQ	ENSG00000065675.15	ENST00000397176.6:ENST00000539722.5:ENST00000610727.1:ENST00000263125.10	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.07474	2.41352	2.7523	0.0338882	0.0153283	0.139841	0.0828908
chr20	1443549	1443648	17875431	0	-	0.434343	(0.42,0.455]	chr20	1512356	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NSFL1C	ENSG00000088833.18	ENST00000476071.5:ENST00000555944.5:ENST00000353088.6:ENST00000461211.5:ENST00000216879.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	2.07474	2.41352	2.7523	0.0338882	0.0153283	0.139841	0.0828908
chr5	79668891	79668959	6053438	0	+	0.441176	(0.42,0.455]	chr5	474989	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TENT2	ENSG00000164329.14	ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7:ENST00000504982.1:ENST00000513735.5:ENST00000515298.5:ENST00000510721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	18	2	2.07474	2.41352	2.7523	0.0338882	0.0153283	0.139841	0.0828908
chr2	85320390	85320489	2770114	0	-	0.383838	(0.36,0.39]	chr2	245643	25	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	14	60	2	2.08213	2.41334	2.74455	0.00170782	1.00888e-4	0.0167283	0.00197588
chr22	41680303	41680363	18520293	0	-	0.566667	(0.53,0.59]	chr22	1581366	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	SNU13	ENSG00000100138.15	ENST00000401959.6:ENST00000648674.1:ENST00000215956.10:ENST00000463675.6:ENST00000648350.1:ENST00000649479.1:ENST00000402458.1:ENST00000469028.2:ENST00000649722.1:ENST00000488571.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	52	2	2.19975	2.413215	2.62668	0.00293564	0.00157636	0.0261315	0.015761
chr12	68731109	68731184	12940188	0	+	0.346667	(0.33,0.36]	chr12	1008478	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000538993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	40	2	1.95788	2.413065	2.86825	0.00652477	2.65216e-4	0.0455786	0.004287
chr9	92210806	92210889	10736717	0	-	0.385542	(0.36,0.39]	chr9	812218	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684232.1:ENST00000684101.1:ENST00000682714.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	1.93673	2.412955	2.88918	0.00693194	0.00212816	0.0473262	0.0206577
chr7	76054913	76054998	8342280	0	+	0.6	(0.59,1]	chr7	636218	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MDH2	ENSG00000146701.12	ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1:ENST00000492663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	153	2	2.16246	2.41287	2.66328	0.00162783	2.26541e-4	0.0169972	0.00348145
chr7	92614543	92614642	8924985	0	-	0.333333	(0.33,0.36]	chr7	681136	98	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	2.05144	2.4128	2.77416	0.00903135	8.34192e-4	0.0573114	0.00978328
chr14	102026573	102026640	14495624	0	+	0.38806	(0.36,0.39]	chr14	1133161	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	2.19	2.412605	2.63521	0.0111937	0.00633242	0.0665375	0.0446708
chr14	100334874	100334974	14788504	0	-	0.57	(0.53,0.59]	chr14	1158692	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000554950.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	66	2	2.38191	2.41251	2.44311	0.00477439	3.01774e-4	0.0368489	0.00439897
chr11	5300516	5300616	12241091	0	-	0.31	(0.29,0.33]	chr11	946132	83	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	20	2	2.02337	2.41249	2.80161	0.0217631	0.00415667	0.103469	0.0325842
chr11	125584229	125584320	12194216	0	+	0.32967	(0.29,0.33]	chr11	940681	7	UTR3	UTR3:EXON_MRNA	EI24	ENSG00000149547.15	ENST00000620753.4:ENST00000278903.11:ENST00000527235.6	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.02337	2.41249	2.80161	0.0217631	0.00415667	0.103469	0.0325842
chr17	51169992	51170049	16266641	0	+	0.54386	(0.53,0.59]	chr17	1319618	2	CDS	CDS:EXON_MRNA:INTRON	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000393190.4:ENST00000570801.1:ENST00000573262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	1.70379	2.41244	3.12109	0.0330081	3.24817e-5	0.138711	7.18962e-4
chr22	31956972	31957062	18351656	0	+	0.444444	(0.42,0.455]	chr22	1560136	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000248975.6:ENST00000471374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	2.34191	2.4122500000000002	2.48259	0.0159091	0.0031851	0.0854674	0.0267166
chr19	5691318	5691410	17210640	0	+	0.586957	(0.53,0.59]	chr19	1415423	1	CDS	CDS:EXON_MRNA	RPL36	ENSG00000130255.13	ENST00000579649.5:ENST00000577222.5:ENST00000347512.8:ENST00000579446.1:ENST00000590786.5:ENST00000394580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	64	396	2	2.28784	2.41216	2.53648	1.77079e-5	2.07819e-6	4.85777e-4	7.37958e-5
chr8	38120931	38121003	9291589	0	+	0.513889	(0.49,0.53]	chr8	710613	1	CDS	CDS:UTR3:EXON_MRNA	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000518186.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	1.78308	2.4120749999999997	3.04107	0.0425234	0.00533879	0.167547	0.0392268
chr1	111703335	111703405	409048	0	+	0.357143	(0.33,0.36]	chr1	40257	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAP1A	ENSG00000116473.14	ENST00000356415.5:ENST00000433097.5:ENST00000369709.3:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	2.05855	2.412025	2.7655	0.018622	0.0175892	0.0952021	0.0918323
chr4	145124989	145125045	5146180	0	+	0.357143	(0.33,0.36]	chr4	416383	1	CDS	CDS:UTR3:EXON_MRNA	ABCE1	ENSG00000164163.11	ENST00000296577.9:ENST00000507193.5:ENST00000504683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	18	2	2.05855	2.412025	2.7655	0.018622	0.0175892	0.0952021	0.0918323
chr1	26278618	26278713	108904	0	+	0.6	(0.59,1]	chr1	12966	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	27	2	2.32455	2.411975	2.4994	0.0520547	0.0333573	0.193787	0.137922
chr12	120134629	120134726	13579061	0	-	0.649485	(0.59,1]	chr12	1068549	2	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000549815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.32455	2.411975	2.4994	0.0520547	0.0333573	0.193787	0.137922
chr17	44219750	44219847	16557305	0	-	0.773196	(0.59,1]	chr17	1359184	1	INTRON	INTRON	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000527034.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.32455	2.411975	2.4994	0.0520547	0.0333573	0.193787	0.137922
chr19	3464356	3464455	17202167	0	+	0.676768	(0.59,1]	chr19	1413755	17	UTR3	UTR3:EXON_MRNA	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000443272.3	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.32455	2.411975	2.4994	0.0520547	0.0333573	0.193787	0.137922
chr8	143921210	143921309	10146687	0	-	0.626263	(0.59,1]	chr8	763001	51	CDS	CDS:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8:ENST00000527096.5	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.32455	2.411975	2.4994	0.0520547	0.0333573	0.193787	0.137922
chr7	149003518	149003610	9124729	0	-	0.23913	[0,0.29]	chr7	696952	6	UTR3	UTR3:EXON_MRNA	PDIA4	ENSG00000155660.11	ENST00000652332.1:ENST00000286091.9	protein_coding	protein_coding	protein_coding	protein_coding	8	31	2	2.3458	2.41194	2.47808	0.0116272	8.43399e-4	0.0685835	0.00984729
chr16	88521828	88521927	15805890	0	+	0.616162	(0.59,1]	chr16	1257865	53	INTRON	INTRON	ZFPM1	ENSG00000179588.9	ENST00000319555.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.39747	2.41193	2.42639	0.0430221	0.0409084	0.163285	0.161091
chr6	43513134	43513200	7708000	0	-	0.651515	(0.59,1]	chr6	591422	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YIPF3	ENSG00000137207.12	ENST00000372422.7:ENST00000510102.5:ENST00000506469.5:ENST00000490447.6:ENST00000503147.1:ENST00000503972.5:ENST00000514627.5:ENST00000460547.6:ENST00000512713.5:ENST00000455768.6:ENST00000416380.6:ENST00000372417.1:ENST00000500090.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	27	2	2.39747	2.41193	2.42639	0.0430221	0.0409084	0.163285	0.161091
chr7	150945464	150945514	9128605	0	-	0.68	(0.59,1]	chr7	697444	1	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.39747	2.41193	2.42639	0.0430221	0.0409084	0.163285	0.161091
chr8	143915524	143915617	10146629	0	-	0.655914	(0.59,1]	chr8	762999	5	UTR3	UTR3:EXON_MRNA	PLEC	ENSG00000178209.16	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000322810.8:ENST00000398774.6:ENST00000354589.7:ENST00000357649.6:ENST00000345136.8	protein_coding	protein_coding	protein_coding	protein_coding	2	27	2	2.39747	2.41193	2.42639	0.0430221	0.0409084	0.163285	0.161091
chr20	47210560	47210657	17993113	0	-	0.587629	(0.53,0.59]	chr20	1524924	15	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6	protein_coding	protein_coding	protein_coding	protein_coding	8	50	2	2.19041	2.411785	2.63316	0.00474401	0.00191981	0.0361423	0.019137
chr16	28836800	28836887	15620406	0	+	0.632184	(0.59,1]	chr16	1238485	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000566007.5:ENST00000564162.1:ENST00000567024.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	16	180	2	2.0449	2.4117800000000003	2.77866	0.00282625	5.07696e-5	0.0252363	0.00104173
chr6	37170320	37170405	7136246	0	+	0.776471	(0.59,1]	chr6	549926	3	UTR5	UTR5:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	29	325	2	1.92457	2.41125	2.89793	0.00174858	5.17999e-6	0.0180053	1.59464e-4
chr22	21450971	21451069	18302374	0	+	0.693878	(0.59,1]	chr22	1554129	44	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	2.01575	2.41106	2.80637	0.0201728	0.00274489	0.0978331	0.0238522
chr4	176331462	176331559	5242256	0	+	0.257732	[0,0.29]	chr4	421869	33	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.20534	2.41081	2.61628	0.0117033	0.0101434	0.0685676	0.0626311
chr1	161209856	161209931	499147	0	+	0.546667	(0.53,0.59]	chr1	54022	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000679218.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000478866.5:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	40	2	1.70379	2.41079	3.11779	0.0330081	5.11883e-4	0.138711	0.00664583
chr22	42618998	42619095	18524332	0	-	0.587629	(0.53,0.59]	chr22	1581940	13	UTR3	UTR3:EXON_MRNA	CYB5R3	ENSG00000100243.21	ENST00000352397.10:ENST00000361740.8:ENST00000407623.7:ENST00000407332.5:ENST00000470741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	40	2	1.70379	2.41079	3.11779	0.0330081	5.11883e-4	0.138711	0.00664583
chr9	133020477	133020576	10502746	0	+	0.535354	(0.53,0.59]	chr9	794052	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P5	ENSG00000196205.8	ENST00000436459.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	24	161	2	2.05866	2.410755	2.76285	0.00107766	3.15292e-6	0.0124943	1.05314e-4
chr1	225790190	225790283	737935	0	+	0.301075	(0.29,0.33]	chr1	74393	10	UTR3	UTR3:EXON_MRNA	SRP9	ENSG00000143742.14	ENST00000304786.12:ENST00000366839.8:ENST00000651761.1	protein_coding	protein_coding	protein_coding	protein_coding	33	127	2	2.37225	2.4107450000000004	2.44924	2.08307e-4	7.64732e-6	0.00352647	2.20857e-4
chr22	31956423	31956513	18351650	0	+	0.477778	(0.455,0.49]	chr22	1560134	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	YWHAH	ENSG00000128245.15	ENST00000397492.1:ENST00000443669.5:ENST00000248975.6:ENST00000479649.1:ENST00000471374.1:ENST00000420430.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	31	2	2.13079	2.41066	2.69053	0.0182983	0.00422749	0.0925808	0.0329189
chr17	35723795	35723892	16207500	0	+	0.43299	(0.42,0.455]	chr17	1309154	2	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	47	2	2.25867	2.41065	2.56263	0.0025407	9.19381e-4	0.0233955	0.0104432
chr11	6486367	6486467	11781874	0	+	0.33	(0.29,0.33]	chr11	901763	18	INTRON	INTRON	CTD-2010I16.2	ENSG00000283977.1	ENST00000639224.1:ENST00000640959.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	17	2	2.36742	2.410575	2.45373	0.0156405	0.0147368	0.084273700000000007	0.0801529
chr5	163483267	163483367	6343702	0	+	0.3	(0.29,0.33]	chr5	494093	1	CDS	CDS:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000353866.7:ENST00000393915.9:ENST00000432118.6:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.36742	2.410575	2.45373	0.0156405	0.0147368	0.084273700000000007	0.0801529
chr5	77767205	77767305	6650815	0	-	0.38	(0.36,0.39]	chr5	513877	520	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.19	2.4105749999999997	2.63115	0.0245975	0.0111937	0.114841	0.0665375
chr2	197409927	197410007	3106497	0	-	0.575	(0.53,0.59]	chr2	274581	3	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	30	2	1.60161	2.41051	3.21941	0.0451605	0.00266171	0.167576	0.0240332
chr2	157258762	157258859	2152111	0	+	0.546392	(0.53,0.59]	chr2	198573	7	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.26097	2.410495	2.56002	0.00634904	0.00389622	0.0446708	0.0313006
chr15	69455228	69455287	15002386	0	+	0.677966	(0.59,1]	chr15	1179285	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	44	472	2	2.11451	2.4103950000000003	2.70628	3.2734e-4	8.70634e-6	0.00502702	2.45632e-4
chr12	132769511	132769611	13624689	0	-	0.46	(0.455,0.49]	chr12	1073451	7	UTR3	UTR3:EXON_MRNA	GOLGA3	ENSG00000090615.15	ENST00000204726.8:ENST00000450791.7	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.98188	2.410235	2.83859	0.0226804	0.00215336	0.105116	0.0208395
chr4	143349461	143349555	5694576	0	-	0.606383	(0.59,1]	chr4	451354	3	EXON_PSEUDO	EXON_PSEUDO	RP11-364L4.1	ENSG00000228981.3	ENST00000475555.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	52	2	2.04605	2.4101150000000002	2.77418	0.0160729	0.0103872	0.0860154	0.0640167
chr1	226374225	226374289	1533155	0	-	0.421875	(0.42,0.455]	chr1	153453	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	30	2	2.19674	2.4101	2.62346	0.0254904	0.00164881	0.117089	0.0163523
chr20	62905601	62905693	18031262	0	-	0.402174	(0.39,0.42]	chr20	1529200	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.11399	2.40995	2.70591	0.0185716	0.014455	0.0932453	0.0787564
chr7	103433460	103433510	8962808	0	-	0.4	(0.39,0.42]	chr7	686018	1	EXON_SMALL	EXON_SMALL:INTRON	SLC26A5:Y_RNA	ENSG00000170615.15:ENSG00000251852.1	ENST00000339444.10:ENST00000356767.8:ENST00000393735.6:ENST00000306312.8:ENST00000393730.5:ENST00000445809.5:ENST00000454864.5:ENST00000432958.6:ENST00000354356.8:ENST00000423416.5:ENST00000393729.5:ENST00000456463.5:ENST00000487407.1:ENST00000516043.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	2.11399	2.40995	2.70591	0.0185716	0.014455	0.0932453	0.0787564
chrX	134500274	134500372	18863978	0	+	0.346939	(0.33,0.36]	chrX	1607407	3	UTR3	UTR3:EXON_MRNA:INTRON	HPRT1	ENSG00000165704.15	ENST00000298556.8:ENST00000475720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	26	2	2.36984	2.40985	2.44986	0.00564505	0.00563343	0.0422191	0.041184
chr4	39457606	39457681	5383262	0	-	0.48	(0.455,0.49]	chr4	431470	1	CDS	CDS:UTR5:EXON_MRNA	RPL9	ENSG00000163682.17	ENST00000645496.2:ENST00000295955.14:ENST00000503277.6:ENST00000508595.6:ENST00000449470.6:ENST00000506581.6:ENST00000503040.5:ENST00000511075.5:ENST00000437992.2:ENST00000514842.6:ENST00000645585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	103	2	1.54994	2.40982	3.2697	0.00472875	3.70782e-6	0.0360883	1.31913e-4
chr15	77615304	77615400	15391774	0	-	0.583333	(0.53,0.59]	chr15	1216760	13	CDS	CDS:EXON_MRNA	LINGO1	ENSG00000169783.13	ENST00000355300.7:ENST00000561030.5:ENST00000557798.1:ENST00000561686.5	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.0404	2.409805	2.77921	0.0362529	0.0132865	0.148525	0.0740932
chr7	73477339	73477434	8853849	0	-	0.547368	(0.53,0.59]	chr7	675937	6	CDS	CDS:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	29	2	2.27113	2.409785	2.54844	0.0178853	0.00663226	0.0918323	0.0461575
chr18	35141628	35141725	16822730	0	+	0.329897	(0.29,0.33]	chr18	1387343	14	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	11	41	2	2.28665	2.40974	2.53283	0.0022585	5.94788e-4	0.0214524	0.00746384
chr9	121179911	121180010	10835874	0	-	0.272727	[0,0.29]	chr9	820919	19	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.40395	2.4095500000000003	2.41515	0.0210081	0.00119134	0.101116	0.0128164
chr6	32168501	32168597	7664644	0	-	0.583333	(0.53,0.59]	chr6	586094	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AGPAT1	ENSG00000204310.13	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	86	2	1.93933	2.4093850000000003	2.8794400000000002	0.00455262	3.08968e-5	0.0352819	6.92047e-4
chr2	26367145	26367220	1687107	0	+	0.533333	(0.53,0.59]	chr2	164921	1	CDS	CDS:EXON_MRNA	SELENOI	ENSG00000138018.18	ENST00000442141.5:ENST00000613142.4:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.0289	2.40935	2.7898	0.0373899	0.0128364	0.146698	0.0719798
chr6	30707383	30707454	7659071	0	-	0.549296	(0.53,0.59]	chr6	584229	1	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000417033.1:ENST00000492462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.0289	2.40935	2.7898	0.0373899	0.0128364	0.146698	0.0719798
chr6	67883576	67883676	7784096	0	-	0.5	(0.49,0.53]	chr6	596223	15	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	61	326	2	2.30407	2.4092000000000002	2.51433	1.40831e-5	2.08038e-6	3.99616e-4	7.38661e-5
chr21	43693882	43693982	18135733	0	+	0.51	(0.49,0.53]	chr21	1538248	6	UTR3	UTR3:EXON_MRNA	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	2.03065	2.4091899999999997	2.78773	0.0189484	0.00257389	0.0958835	0.0235767
chr19	11666068	11666164	17464488	0	-	0.510417	(0.49,0.53]	chr19	1462117	1	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P10	ENSG00000214223.4	ENST00000444945.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	30	2	2.21702	2.40909	2.60116	0.00959574	0.0056515	0.0603269	0.0422191
chr6	43771246	43771312	7159783	0	+	0.530303	(0.53,0.59]	chr6	553427	1	CDS_START	CDS_START:CDS:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000476772.5:ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000425836.7:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000518538.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000512683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	58	2	2.30153	2.4087750000000003	2.51602	0.00264912	0.00107248	0.024013	0.0118238
chr16	69703380	69703479	15725393	0	+	0.313131	(0.29,0.33]	chr16	1252140	72	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NFAT5:RP11-311C24.1	ENSG00000102908.22:ENSG00000260772.1	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7:ENST00000561622.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	4	17	2	2.14426	2.408515	2.67277	0.0255386	0.0142448	0.117089	0.077929
chr2	231456009	231456076	3226722	0	-	0.552239	(0.53,0.59]	chr2	283844	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000466274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	91	2	1.8853	2.40835	2.9314	0.00442316	2.15321e-5	0.034414	5.14531e-4
chr8	38261748	38261847	9292760	0	+	0.323232	(0.29,0.33]	chr8	710795	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000517385.5:ENST00000526071.1:ENST00000529872.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	30	2	2.17855	2.408255	2.63796	0.0183673	6.9438e-4	0.0928041	0.00846751
chr10	124765535	124765608	11731041	0	-	0.369863	(0.36,0.39]	chr10	895190	3	CDS	CDS:UTR3:EXON_MRNA	RP11-12J10.3:EEF1AKMT2	ENSG00000258539.1:ENSG00000203791.15	ENST00000494792.1:ENST00000652548.1:ENST00000466270.5:ENST00000368836.7:ENST00000464099.5:ENST00000498770.1:ENST00000468738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	1.97546	2.408175	2.84089	0.0239316	0.0128123	0.109927	0.0719798
chr4	76132522	76132620	5475364	0	-	0.408163	(0.39,0.42]	chr4	438905	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	NUP54	ENSG00000138750.15	ENST00000507257.5:ENST00000264883.8:ENST00000502850.5:ENST00000514987.5:ENST00000512151.5:ENST00000504173.1:ENST00000514313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	38	2	1.58577	2.40817	3.23057	0.0214904	3.34829e-4	0.102904	0.00509483
chr3	185926600	185926667	4628356	0	-	0.522388	(0.49,0.53]	chr3	382277	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000493864.1:ENST00000477939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	36	2	2.30264	2.408155	2.51367	0.0165402	0.00120983	0.087611	0.0135286
chr9	112227554	112227627	10802961	0	-	0.438356	(0.42,0.455]	chr9	818421	3	CDS	CDS:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.33282	2.407705	2.48259	0.00677333	0.0031851	0.0462932	0.0267166
chr11	119305399	119305498	12163803	0	+	0.50505	(0.49,0.53]	chr11	938080	58	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.69633	2.407625	3.11892	0.0531914	0.00398244	0.184818	0.0322851
chr8	47969970	47970057	9316216	0	+	0.402299	(0.39,0.42]	chr8	713558	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000650327.1:ENST00000518680.1:ENST00000517709.1:ENST00000648554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	48	2	2.03728	2.40754	2.7778	0.00508196	2.79638e-4	0.038965	0.0041355
chr11	65351759	65351855	11984139	0	+	0.5	(0.49,0.53]	chr11	920300	1	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	62	2	1.81941	2.4074549999999997	2.9955	0.0158768	2.81012e-5	0.0854674	6.42183e-4
chr17	40408560	40408630	16538966	0	-	0.428571	(0.42,0.455]	chr17	1354661	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	1.87159	2.40742	2.94325	0.0214479	1.00632e-4	0.102998	0.00181216
chr1	45584066	45584146	174818	0	+	0.5625	(0.53,0.59]	chr1	22676	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	51	2	1.60161	2.40741	3.21321	0.0451605	6.1362e-5	0.167576	0.00133162
chr10	18681046	18681144	10946976	0	+	0.377551	(0.36,0.39]	chr10	833591	60	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.1437	2.4074	2.6711	0.0340515	0.00434596	0.141465	0.0335517
chr5	37290116	37290215	6539924	0	-	0.383838	(0.36,0.39]	chr5	506493	21	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.1437	2.4074	2.6711	0.0340515	0.00434596	0.141465	0.0335517
chr2	26373541	26373629	1687172	0	+	0.431818	(0.42,0.455]	chr2	164927	3	CDS	CDS:EXON_MRNA:INTRON	SELENOI	ENSG00000138018.18	ENST00000613142.4:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	10	49	2	1.98051	2.40723	2.83395	0.00383646	6.25227e-4	0.0310411	0.00830005
chr12	110445451	110445533	13537549	0	-	0.47561	(0.455,0.49]	chr12	1064892	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RP11-478C19.2:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000426440.5:ENST00000547365.1:ENST00000548878.6:ENST00000471641.1:ENST00000475777.2:ENST00000549408.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	9	48	2	1.56466	2.407215	3.24977	0.0309562	4.77546e-5	0.131262	9.90649e-4
chr10	68342243	68342338	11089768	0	+	0.284211	[0,0.29]	chr10	842858	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	21	2	1.84905	2.40719	2.96533	0.0241194	0.0024246	0.110734	0.0227938
chr1	54226430	54226530	1028119	0	-	0.43	(0.42,0.455]	chr1	106759	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	41	2	1.51711	2.407155	3.2972	0.0297484	1.93851e-4	0.129773	0.00307904
chr6	31641165	31641228	7661390	0	-	0.555556	(0.53,0.59]	chr6	584814	2	CDS	CDS:UTR3:EXON_MRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	45	2	1.78041	2.40713	3.03385	0.0407112	1.81515e-4	0.163285	0.00293332
chr12	110429259	110429359	13537376	0	-	0.64	(0.59,1]	chr12	1064862	257	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	17	190	2	2.20891	2.4071	2.60529	0.00172261	7.92529e-5	0.0177928	0.00150306
chr7	6044561	6044661	8662621	0	-	0.52	(0.49,0.53]	chr7	662581	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5:ENST00000470168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	41	2	2.38935	2.4068300000000002	2.42431	0.00488689	0.0018555	0.0376157	0.0178545
chr14	55051646	55051724	14297908	0	+	0.705128	(0.59,1]	chr14	1117525	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000556515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.96416	2.4068	2.84944	0.044741	0.0128238	0.166115	0.0719798
chr1	247879250	247879349	816547	0	+	0.575758	(0.53,0.59]	chr1	80729	29	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.35511	2.4067749999999997	2.45844	0.0445399	0.00930921	0.172163	0.0587563
chr12	56601637	56601729	13351714	0	-	0.586957	(0.53,0.59]	chr12	1051625	2	CDS	CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	3	23	2	2.35511	2.4067749999999997	2.45844	0.0445399	0.00930921	0.172163	0.0587563
chr9	128178708	128178796	10863838	0	-	0.568182	(0.53,0.59]	chr9	823426	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000475471.1:ENST00000476239.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	23	2	2.35511	2.4067749999999997	2.45844	0.0445399	0.00930921	0.172163	0.0587563
chr4	1693596	1693696	5279949	0	-	0.46	(0.455,0.49]	chr4	424979	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.15985	2.406685	2.65352	0.0128965	0.00143499	0.0722356	0.0147046
chr7	5231146	5231246	8111511	0	+	0.38	(0.36,0.39]	chr7	619928	3	UTR3	UTR3:EXON_MRNA	WIPI2	ENSG00000157954.15	ENST00000401525.7:ENST00000288828.9:ENST00000382384.6:ENST00000471851.1:ENST00000479690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.18188	2.4065149999999997	2.63115	0.0245975	0.00600314	0.114841	0.042887
chr5	163443890	163443984	6343430	0	+	0.308511	(0.29,0.33]	chr5	494014	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000509143.1:ENST00000509425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	36	2	1.99395	2.40646	2.81897	0.0131526	2.43076e-4	0.0733631	0.00367789
chr1	155478579	155478678	1309210	0	-	0.484848	(0.455,0.49]	chr1	132425	8	CDS	CDS:UTR3:EXON_MRNA	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	36	2	1.5635	2.406315	3.24913	0.018773	0.00239443	0.0958835	0.0225356
chr16	88810422	88810489	16075177	0	-	0.641791	(0.59,1]	chr16	1291805	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	APRT	ENSG00000198931.11	ENST00000378364.8:ENST00000567713.5:ENST00000568319.5:ENST00000567391.5:ENST00000426324.6:ENST00000563655.5:ENST00000569616.1:ENST00000562464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	37	2	2.38614	2.4062650000000003	2.42639	0.0409084	0.0128707	0.163285	0.0725185
chr7	100640778	100640872	8952383	0	-	0.595745	(0.59,1]	chr7	684216	2	CDS	CDS:EXON_MRNA	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5:ENST00000474947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	37	2	2.38614	2.4062650000000003	2.42639	0.0409084	0.0128707	0.163285	0.0725185
chrX	153948749	153948848	19275566	0	-	0.545455	(0.53,0.59]	chrX	1637875	13	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	5	35	2	2.37399	2.406255	2.43852	0.0126178	0.00373745	0.0717599	0.0303359
chrX	65741639	65741736	18716382	0	+	0.463918	(0.455,0.49]	chrX	1596885	19	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	18	85	2	1.49454	2.406215	3.31789	0.0123193	2.55552e-6	0.0705839	8.83735e-5
chr1	77948485	77948578	1112665	0	-	0.301075	(0.29,0.33]	chr1	111852	11	UTR3	UTR3:EXON_MRNA:INTRON	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000492724.1:ENST00000492405.5:ENST00000488814.5:ENST00000294623.8:ENST00000370767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	61	2	2.38372	2.406135	2.42855	3.73664e-4	2.32642e-4	0.00560169	0.00355641
chr3	196828318	196828405	3990178	0	+	0.436782	(0.42,0.455]	chr3	336201	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7:ENST00000426668.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.24157	2.40604	2.57051	0.0265466	0.0087798	0.120071	0.0562439
chrX	132072956	132073024	18860621	0	+	0.441176	(0.42,0.455]	chrX	1607238	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.24157	2.40604	2.57051	0.0265466	0.0087798	0.120071	0.0562439
chr4	65573554	65573651	4864486	0	+	0.525773	(0.49,0.53]	chr4	400319	2	EXON_PSEUDO	EXON_PSEUDO	RP11-408P14.1	ENSG00000243199.1	ENST00000466377.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	41	2	1.72711	2.40599	3.08487	0.0162279	6.09273e-4	0.0864269	0.00760626
chr17	75846533	75846633	16685226	0	-	0.6	(0.59,1]	chr17	1373620	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5:ENST00000588373.5:ENST00000433525.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	36	2	1.96394	2.40571	2.84748	0.0453144	0.0124539	0.174798	0.0712518
chr21	8437142	8437242	18041915	0	+	0.67	(0.59,1]	chr21	1530900	41	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	2212	23169	2	2.29438	2.40562	2.51686	1.4986e-5	4.40915e-6	3.8331e-4	1.53492e-4
chr5	133091165	133091216	6227042	0	+	0.411765	(0.39,0.42]	chr5	484787	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1	protein_coding	protein_coding	protein_coding	protein_coding	9	45	2	2.03292	2.40536	2.7778	0.00788976	2.79638e-4	0.0522564	0.0041355
chr3	98577366	98577466	4319509	0	-	0.49	(0.455,0.49]	chr3	360247	34	INTRON	INTRON	RP11-227H4.8:RP11-227H4.9	ENSG00000285635.1:ENSG00000286602.1	ENST00000512905.6:ENST00000654582.1	protein_coding	nonsense_mediated_decay	protein_coding:lncRNA	nonsense_mediated_decay:lncRNA	3	18	2	1.95898	2.40535	2.85172	0.047107	0.010864	0.172269	0.0643837
chr22	21763841	21763941	18442389	0	-	0.53	(0.49,0.53]	chr22	1572508	43	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	18	86	2	1.88876	2.4051400000000003	2.92152	0.00133292	1.16526e-4	0.0139317	0.00222174
chr13	95161268	95161335	14110789	0	-	0.373134	(0.36,0.39]	chr13	1104382	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	42	2	1.81435	2.40502	2.99569	0.0302191	7.37624e-5	0.129773	0.00141413
chr11	6483303	6483401	11781843	0	+	0.44898	(0.42,0.455]	chr11	901762	12	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2010I16.2:TIMM10B	ENSG00000283977.1:ENSG00000132286.12	ENST00000639224.1:ENST00000640959.1:ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	43	2	2.2473	2.404965	2.56263	0.0048106	9.19381e-4	0.0371037	0.0104432
chr21	29061334	29061417	18201989	0	-	0.457831	(0.455,0.49]	chr21	1544716	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000432178.5:ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	26	142	2	2.16735	2.4049449999999997	2.64254	7.89511e-4	3.62699e-6	0.00983876	1.18394e-4
chr17	40411108	40411177	16538992	0	-	0.347826	(0.33,0.36]	chr17	1354667	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	14	70	2	1.8158	2.404925	2.99405	0.0161406	3.50325e-6	0.0860154	1.1444e-4
chr11	65997424	65997522	12423528	0	-	0.469388	(0.455,0.49]	chr11	964316	10	UTR3	UTR3:EXON_MRNA	EIF1AD	ENSG00000175376.9	ENST00000312234.6:ENST00000533544.6:ENST00000526451.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.96875	2.40477	2.84079	0.0480352	0.00201021	0.180552	0.0190112
chr7	2366524	2366591	8096205	0	+	0.462687	(0.455,0.49]	chr7	618882	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF3B	ENSG00000106263.18	ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.1:ENST00000463026.5:ENST00000466199.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	1.96875	2.40477	2.84079	0.0480352	0.00201021	0.180552	0.0190112
chr17	32366664	32366757	16200611	0	+	0.451613	(0.42,0.455]	chr17	1308181	1	CDS	CDS:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000584696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	56	2	1.90662	2.40473	2.90284	0.0031474	4.27478e-4	0.0265484	0.00618684
chr1	228458410	228458510	746383	0	+	0.66	(0.59,1]	chr1	75785	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BU1	ENSG00000196890.4	ENST00000620438.1	protein_coding	protein_coding	protein_coding	protein_coding	4	48	2	2.38614	2.40469	2.42324	0.0128707	0.0116918	0.0725185	0.0686664
chr11	406359	406448	12225958	0	-	0.662921	(0.59,1]	chr11	943207	5	CDS	CDS:EXON_MRNA	SIGIRR	ENSG00000185187.13	ENST00000527295.5:ENST00000332725.7:ENST00000397632.7:ENST00000431843.7:ENST00000526395.5:ENST00000528845.5:ENST00000527987.1:ENST00000531205.5:ENST00000534145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	27	2	2.28778	2.40464	2.5215	0.0556537	0.032241	0.191528	0.135671
chr21	33588641	33588706	18221069	0	-	0.815385	(0.59,1]	chr21	1546523	1	UTR5	UTR5:EXON_MRNA:INTRON	DONSON:AP000304.12	ENSG00000159147.18:ENSG00000249209.2	ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000432378.5:ENST00000429238.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	27	2	2.28778	2.40464	2.5215	0.0556537	0.032241	0.191528	0.135671
chr3	31532828	31532924	3391444	0	+	0.708333	(0.59,1]	chr3	295002	3	EXON_LNCRNA	EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000453168.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	27	2	2.28778	2.40464	2.5215	0.0556537	0.032241	0.191528	0.135671
chr2	36847761	36847860	2594591	0	-	0.393939	(0.39,0.42]	chr2	233508	102	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.34349	2.40461	2.46573	0.0169272	0.00349672	0.0890655	0.0288123
chr3	14181614	14181670	3319779	0	+	0.392857	(0.39,0.42]	chr3	292169	2	CDS	CDS:EXON_MRNA	LSM3	ENSG00000170860.4	ENST00000306024.4	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.34349	2.40461	2.46573	0.0169272	0.00349672	0.0890655	0.0288123
chr19	49832361	49832415	17373042	0	+	0.555556	(0.53,0.59]	chr19	1443811	2	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	MED25:MIR6800	ENSG00000104973.19:ENSG00000284114.1	ENST00000593767.3:ENST00000312865.10:ENST00000538643.5:ENST00000595185.5:ENST00000599722.1:ENST00000614963.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	3	22	2	2.16037	2.40437	2.64837	0.0254312	0.0199467	0.117089	0.0984041
chr8	144424214	144424268	10148897	0	-	0.574074	(0.53,0.59]	chr8	763714	1	CDS	CDS:UTR3:EXON_MRNA	VPS28	ENSG00000160948.14	ENST00000377348.6:ENST00000292510.6:ENST00000526054.5:ENST00000526977.5:ENST00000529182.5:ENST00000526204.5:ENST00000530983.5:ENST00000528142.5:ENST00000530836.5:ENST00000527797.6:ENST00000533806.5:ENST00000531032.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.16037	2.40437	2.64837	0.0254312	0.0199467	0.117089	0.0984041
chr6	2948548	2948623	7570805	0	-	0.546667	(0.53,0.59]	chr6	577709	3	CDS	CDS:UTR3:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	1.90953	2.404345	2.89916	0.0517711	0.00890406	0.193577	0.0565003
chr21	33549771	33549870	18101154	0	+	0.454545	(0.42,0.455]	chr21	1534525	4	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.99701	2.40419	2.81137	0.0235036	0.0120386	0.111072	0.0700876
chr7	121296049	121296149	8496830	0	+	0.38	(0.36,0.39]	chr7	648451	5	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.17668	2.403915	2.63115	0.0245975	0.00353709	0.114841	0.029112
chr6	43613659	43613730	7159294	0	+	0.464789	(0.455,0.49]	chr6	553358	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	POLH	ENSG00000170734.12	ENST00000372236.9:ENST00000372226.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.27492	2.4038899999999996	2.53286	0.0282409	0.0193827	0.124386	0.0943643
chr8	11845025	11845124	9699206	0	-	0.50505	(0.49,0.53]	chr8	734804	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	58	2	2.20659	2.403875	2.60116	0.0056515	5.92952e-4	0.0422191	0.00744861
chr2	135912485	135912566	2898369	0	-	0.345679	(0.33,0.36]	chr2	258597	1	CDS	CDS:EXON_MRNA:INTRON	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000489964.5:ENST00000422708.3:ENST00000491481.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	47	2	2.25264	2.4037949999999997	2.55495	0.00367014	2.66779e-4	0.0308215	0.00398163
chr1	169477240	169477326	1358218	0	-	0.453488	(0.42,0.455]	chr1	138672	2	CDS	CDS:EXON_MRNA:INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.05515	2.4037249999999997	2.7523	0.017518	0.0153283	0.0924156	0.0828908
chr16	18792657	18792756	15877072	0	-	0.444444	(0.42,0.455]	chr16	1269296	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	13	68	2	2.26652	2.40367	2.54082	0.00146622	1.61532e-4	0.0157384	0.00265627
chrX	152701304	152701397	18912169	0	+	0.591398	(0.59,1]	chrX	1610467	5	CDS	CDS:EXON_MRNA	MAGEA3	ENSG00000221867.9	ENST00000598245.2:ENST00000417212.5:ENST00000370278.4	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.03921	2.4036150000000003	2.76802	0.0371471	0.0158525	0.151849	0.0854671
chr2	195735730	195735829	2290931	0	+	0.262626	[0,0.29]	chr2	207636	8	UTR3	UTR3:EXON_MRNA	SLC39A10	ENSG00000196950.14	ENST00000409086.7:ENST00000430412.5:ENST00000359634.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	16	2	1.81505	2.403585	2.99212	0.0409713	0.0069187	0.163285	0.0473262
chr3	5179556	5179653	3278254	0	+	0.360825	(0.36,0.39]	chr3	288772	9	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8:ENST00000455168.5:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	58	2	1.952	2.4035349999999998	2.85507	0.00826903	3.51295e-5	0.0542098	7.71015e-4
chr2	173955649	173955746	3020160	0	-	0.453608	(0.42,0.455]	chr2	267378	9	CDS	CDS:EXON_MRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	34	2	2.11785	2.40345	2.68905	0.0154862	0.00119301	0.0836691	0.0128249
chrX	66197823	66197894	18717597	0	+	0.633803	(0.59,1]	chrX	1596996	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	66	2	1.86913	2.40342	2.93771	0.0194297	0.00168288	0.0973387	0.0175167
chr15	40529569	40529621	14882396	0	+	0.403846	(0.39,0.42]	chr15	1168659	1	EXON_SMALL	EXON_SMALL:INTRON	RP11-111A22.1:RNU6-516P	ENSG00000259536.5:ENSG00000223313.1	ENST00000561460.5:ENST00000561039.1:ENST00000411381.1	snRNA	snRNA	snRNA:lncRNA	snRNA:lncRNA	7	35	2	2.3212	2.4033800000000003	2.48556	0.00384158	0.00312058	0.0320512	0.0264364
chr21	31702243	31702311	18211519	0	-	0.455882	(0.455,0.49]	chr21	1545348	1	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.96875	2.4033350000000002	2.83792	0.0480352	0.0110512	0.180552	0.0665375
chr2	74891037	74891134	1893429	0	+	0.484536	(0.455,0.49]	chr2	179646	2	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.35644	2.40329	2.45014	0.00555877	0.00397453	0.0405952	0.0322851
chr9	94460370	94460466	10367800	0	+	0.354167	(0.33,0.36]	chr9	780591	11	UTR3	UTR3:EXON_MRNA	MFSD14B	ENSG00000148110.16	ENST00000375344.8:ENST00000428393.3	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.96645	2.4032150000000003	2.83998	0.0197415	2.04094e-4	0.095966	0.0032041
chr6	33290845	33290934	7121657	0	+	0.539326	(0.53,0.59]	chr6	547536	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PFDN6	ENSG00000204220.12	ENST00000395131.5:ENST00000395134.3:ENST00000374607.5:ENST00000374610.6:ENST00000374606.10:ENST00000491382.1:ENST00000463584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	74	2	2.0949	2.4030899999999997	2.71128	0.00477326	9.48387e-5	0.0368489	0.0017288
chr22	21622063	21622161	18303182	0	+	0.540816	(0.53,0.59]	chr22	1554195	5	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	100	2	2.14673	2.4029749999999996	2.65922	0.00239236	3.16254e-5	0.0225356	7.03221e-4
chr12	31981153	31981251	12816017	0	+	0.336735	(0.33,0.36]	chr12	995186	2	CDS	CDS:EXON_MRNA:INTRON	RESF1	ENSG00000174718.12	ENST00000541981.5:ENST00000312561.9:ENST00000535596.5:ENST00000397578.7:ENST00000381054.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	2.28792	2.402945	2.51797	0.0303594	0.0239159	0.130016	0.112531
chr14	102729670	102729769	14500064	0	+	0.333333	(0.33,0.36]	chr14	1133640	33	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.28792	2.402945	2.51797	0.0303594	0.0239159	0.130016	0.112531
chr9	135942061	135942161	10887526	0	-	0.35	(0.33,0.36]	chr9	826835	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	14	2	2.28792	2.402945	2.51797	0.0303594	0.0239159	0.130016	0.112531
chr18	6462874	6462932	17007691	0	-	0.5	(0.49,0.53]	chr18	1397497	2	EXON_PSEUDO	EXON_PSEUDO:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	7	38	2	2.10199	2.4025299999999996	2.70307	0.00487463	0.00363585	0.0375573	0.0298137
chr15	69452948	69453020	15002361	0	+	0.597222	(0.59,1]	chr15	1179281	1	CDS_START	CDS_START:CDS:EXON_MRNA	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	67	708	2	2.38536	2.4024799999999997	2.4196	6.89455e-5	1.93552e-5	0.00146142	4.72712e-4
chr3	101681134	101681215	4331653	0	-	0.481481	(0.455,0.49]	chr3	361334	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	132	2	2.20242	2.402425	2.60243	1.10858e-4	3.02528e-5	0.00197298	7.48342e-4
chr17	28639314	28639387	16486684	0	-	0.479452	(0.455,0.49]	chr17	1348053	1	CDS	CDS:UTR3:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7:ENST00000580882.5:ENST00000581267.1:ENST00000577417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	1.79605	2.40238	3.00871	0.0427708	2.11527e-4	0.168094	0.00328766
chr16	27134823	27134912	15898625	0	-	0.483146	(0.455,0.49]	chr16	1272819	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P38	ENSG00000261557.1	ENST00000567658.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	39	2	1.90433	2.40204	2.89975	0.0185466	3.94125e-4	0.0932453	0.00541075
chr7	116506258	116506357	8475391	0	+	0.282828	[0,0.29]	chr7	647296	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAV2	ENSG00000105971.15	ENST00000222693.5:ENST00000343213.2:ENST00000495841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	43	2	2.30015	2.402	2.50385	0.00128723	5.17394e-4	0.0136506	0.00722535
chr3	47875828	47875900	4164008	0	-	0.5	(0.49,0.53]	chr3	348543	3	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3:ENST00000462206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	37	2	2.26641	2.401955	2.5375	0.0190546	0.00104367	0.093872	0.0115928
chr11	64203176	64203228	11979312	0	+	0.538462	(0.53,0.59]	chr11	918735	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	39	2	1.90953	2.4019	2.89427	0.0517711	3.98634e-4	0.193577	0.00546791
chr19	812045	812139	17189595	0	+	0.521277	(0.49,0.53]	chr19	1411055	14	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	67	2	2.39164	2.401775	2.41191	0.00116644	3.6134e-4	0.0131312	0.00506061
chr1	200405928	200406027	1443663	0	-	0.343434	(0.33,0.36]	chr1	144518	11	UTR3	UTR3:EXON_MRNA	ZNF281	ENSG00000162702.8	ENST00000294740.3:ENST00000367353.2	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.28465	2.4017600000000003	2.51887	0.0358636	0.0188404	0.147298	0.0958835
chr2	60779705	60779775	1839516	0	+	0.342857	(0.33,0.36]	chr2	174659	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PAPOLG	ENSG00000115421.13	ENST00000496283.5:ENST00000414060.5:ENST00000238714.8:ENST00000453839.5:ENST00000483370.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	2.28465	2.4017600000000003	2.51887	0.0358636	0.0188404	0.147298	0.0958835
chr3	197043344	197043443	4667417	0	-	0.333333	(0.33,0.36]	chr3	386231	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	2.28465	2.4017600000000003	2.51887	0.0358636	0.0188404	0.147298	0.0958835
chr4	83470202	83470294	5500301	0	-	0.358696	(0.33,0.36]	chr4	440801	1	CDS	CDS:UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6:ENST00000506553.5:ENST00000611288.4:ENST00000505489.5:ENST00000511801.1:ENST00000503217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	2.28465	2.4017600000000003	2.51887	0.0358636	0.0188404	0.147298	0.0958835
chr2	112663425	112663525	2001925	0	+	0.41	(0.39,0.42]	chr2	190058	5	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	35	2	2.10973	2.401735	2.69374	0.00386013	0.00359606	0.0310764	0.0302737
chr11	64211111	64211171	11979380	0	+	0.516667	(0.49,0.53]	chr11	918765	2	CDS	CDS:UTR5:EXON_MRNA	FERMT3	ENSG00000149781.13	ENST00000544997.5:ENST00000345728.10:ENST00000279227.9:ENST00000541252.1	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.05119	2.40167	2.75215	0.0360743	8.79689e-4	0.145024	0.0107294
chr2	131052352	131052452	2875724	0	-	0.54	(0.53,0.59]	chr2	257460	46	UTR3	UTR3:EXON_MRNA	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	1.8935	2.40164	2.90978	0.00857883	0.00775741	0.0552386	0.050813
chr13	37009510	37009610	13969128	0	-	0.25	[0,0.29]	chr13	1096045	3	UTR3	UTR3:EXON_MRNA	SUPT20H	ENSG00000102710.20	ENST00000350612.11:ENST00000490716.5:ENST00000484078.5:ENST00000360252.8:ENST00000495071.6:ENST00000475892.5:ENST00000356185.7:ENST00000469488.6:ENST00000472948.1:ENST00000473871.1:ENST00000542180.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	12	2	2.15488	2.401555	2.64823	0.0436536	0.0216669	0.170594	0.103121
chr14	81178929	81179029	14730362	0	-	0.26	[0,0.29]	chr14	1153987	36	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	2.15488	2.401555	2.64823	0.0436536	0.0216669	0.170594	0.103121
chr21	14539131	14539230	18164345	0	-	0.272727	[0,0.29]	chr21	1542480	154	INTRON	INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	12	2	2.15488	2.401555	2.64823	0.0436536	0.0216669	0.170594	0.103121
chr1	47218347	47218445	985533	0	-	0.306122	(0.29,0.33]	chr1	104046	22	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	18	71	2	2.15135	2.40102	2.65069	0.00209207	2.15382e-5	0.0204266	5.14641e-4
chr21	33558867	33558961	18101249	0	+	0.361702	(0.36,0.39]	chr21	1534538	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	1.61529	2.400855	3.18642	0.0466766	0.00359152	0.171348	0.0302391
chr1	173488243	173488339	548625	0	+	0.40625	(0.39,0.42]	chr1	58305	5	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	15	74	2	2.16377	2.400825	2.63788	0.00182037	5.2317e-5	0.0183913	0.00106746
chr21	14516891	14516963	18164119	0	-	0.361111	(0.36,0.39]	chr21	1542464	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.85874	2.4008000000000003	2.94286	0.0415243	0.00128446	0.164804	0.0136229
chr7	105106688	105106772	8449811	0	+	0.404762	(0.39,0.42]	chr7	645326	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	2.18025	2.40078	2.62131	0.00609677	0.00587938	0.0439136	0.0424857
chr9	131499018	131499116	10498826	0	+	0.397959	(0.39,0.42]	chr9	793636	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1:ENST00000682662.1:ENST00000683161.1:ENST00000684112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	2.18025	2.40078	2.62131	0.00609677	0.00587938	0.0439136	0.0424857
chr10	68970200	68970275	11093271	0	+	0.48	(0.455,0.49]	chr10	843258	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.0456	2.400735	2.75587	0.00663817	0.00293507	0.0456262	0.025146
chr5	127553697	127553796	6205046	0	+	0.252525	[0,0.29]	chr5	483456	19	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.72784	2.40067	3.0735	0.0182267	0.00785095	0.0945306	0.0520241
chr19	51345210	51345310	17614040	0	-	0.63	(0.59,1]	chr19	1485850	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.19052	2.4006299999999996	2.61074	0.025486	0.0237927	0.117089	0.109413
chr3	45224841	45224935	4150469	0	-	0.606383	(0.59,1]	chr3	346803	5	UTR3	UTR3:EXON_MRNA	TMEM158	ENSG00000249992.2	ENST00000503771.2	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.19052	2.4006299999999996	2.61074	0.025486	0.0237927	0.117089	0.109413
chr8	47858917	47858986	9816367	0	-	0.608696	(0.59,1]	chr8	742675	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	3	36	2	2.19052	2.4006299999999996	2.61074	0.025486	0.0237927	0.117089	0.109413
chr21	37438079	37438179	18116641	0	+	0.34	(0.33,0.36]	chr21	1536238	73	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	2.31697	2.40062	2.48427	0.00966431	0.00150101	0.0606263	0.0152367
chr9	128190687	128190757	10863967	0	-	0.657143	(0.59,1]	chr9	823460	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	36	2	1.88006	2.400515	2.92097	0.0554008	0.0102634	0.191173	0.0628742
chr6	27146417	27146517	7648720	0	-	0.66	(0.59,1]	chr6	582721	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC12	ENSG00000197903.8	ENST00000356950.2	protein_coding	protein_coding	protein_coding	protein_coding	26	282	2	2.24961	2.400465	2.55132	3.52216e-4	7.03294e-5	0.00493699	0.00148713
chr6	47624324	47624422	7171947	0	+	0.265306	[0,0.29]	chr6	554515	2	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.63351	2.40039	3.16727	0.0208248	4.54416e-4	0.100465	0.00608573
chr2	96185448	96185547	2789815	0	-	0.393939	(0.39,0.42]	chr2	248609	7	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	2.01677	2.400385	2.784	0.0235818	0.00261393	0.111323	0.0230705
chr16	75631502	75631589	16039110	0	-	0.54023	(0.53,0.59]	chr16	1288306	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	41	2	2.23406	2.4003550000000002	2.56665	0.00870728	0.00209536	0.0558165	0.0196588
chr7	6403111	6403206	8114069	0	+	0.431579	(0.42,0.455]	chr7	620430	8	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	2.32666	2.400225	2.47379	0.00996858	9.50599e-4	0.0621728	0.0107235
chr5	109368653	109368746	6755084	0	-	0.430108	(0.42,0.455]	chr5	518830	2	CDS	CDS:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.32662	2.400205	2.47379	0.00996858	0.00161131	0.0621728	0.01608
chr6	52273229	52273292	7736681	0	-	0.428571	(0.42,0.455]	chr6	593717	1	CDS	CDS:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.32646	2.400125	2.47379	0.00996858	0.00624136	0.0621728	0.0443844
chr10	110007280	110007380	11691422	0	-	0.68	(0.59,1]	chr10	891734	8	INTRON	INTRON	ADD3-AS1	ENSG00000203876.10	ENST00000627565.2:ENST00000625954.3	lncRNA	lncRNA	lncRNA	lncRNA	12	147	2	1.67911	2.400085	3.12106	0.0201164	1.52934e-5	0.0976908	3.90685e-4
chr19	48965308	48965407	17368080	0	+	0.616162	(0.59,1]	chr19	1442236	1	UTR5	UTR5:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	219	2343	2	2.16671	2.4000500000000002	2.63339	7.18381e-5	2.09034e-6	0.00151627	7.41818e-5
chr19	10149910	10149968	17457923	0	-	0.448276	(0.42,0.455]	chr19	1460478	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DNMT1	ENSG00000130816.17	ENST00000586667.2:ENST00000340748.8:ENST00000359526.9:ENST00000592705.5:ENST00000679103.1:ENST00000677634.1:ENST00000676820.1:ENST00000677250.1:ENST00000677013.1:ENST00000677685.1:ENST00000677616.1:ENST00000676604.1:ENST00000678024.1:ENST00000676868.1:ENST00000677783.1:ENST00000678694.1:ENST00000679100.1:ENST00000678647.1:ENST00000676610.1:ENST00000678804.1:ENST00000679313.1:ENST00000677946.1:ENST00000586799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.36247	2.3999	2.43733	0.0462889	0.0103896	0.176878	0.0640167
chr2	85621484	85621579	1925366	0	+	0.452632	(0.42,0.455]	chr2	181216	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	USP39	ENSG00000168883.20	ENST00000459775.5:ENST00000491659.5:ENST00000474572.6:ENST00000613444.4:ENST00000450066.6:ENST00000448971.5:ENST00000442708.5:ENST00000465282.5:ENST00000409025.5:ENST00000455732.5:ENST00000409470.5:ENST00000323701.11:ENST00000458268.5:ENST00000409766.7:ENST00000493829.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.36247	2.3999	2.43733	0.0462889	0.0103896	0.176878	0.0640167
chr16	21957234	21957318	15586750	0	+	0.535714	(0.53,0.59]	chr16	1235412	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	UQCRC2	ENSG00000140740.11	ENST00000630839.2:ENST00000565464.5:ENST00000268379.9:ENST00000561553.5:ENST00000567757.1:ENST00000563898.5:ENST00000565331.5:ENST00000564095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	120	2	2.33512	2.39982	2.46452	3.86217e-4	6.43558e-5	0.00577413	0.00126174
chrX	63349481	63349579	19088578	0	-	0.520408	(0.49,0.53]	chrX	1624065	24	UTR3	UTR3:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	9	52	2	1.9676	2.399755	2.83191	0.00876974	1.99461e-4	0.056115	0.00316009
chr17	81934652	81934745	16710141	0	-	0.677419	(0.59,1]	chr17	1377910	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6:ENST00000582198.5:ENST00000405481.8:ENST00000585215.5:ENST00000577624.5	protein_coding	protein_coding	protein_coding	protein_coding	4	49	2	2.03921	2.399635	2.76006	0.0371471	0.00330486	0.151849	0.027613
chr16	2767177	2767275	15494947	0	+	0.622449	(0.59,1]	chr16	1227802	58	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	6	69	2	2.25537	2.39947	2.54357	0.00890868	0.00276959	0.0567495	0.0240579
chr1	160305432	160305515	1328843	0	-	0.493976	(0.49,0.53]	chr1	136038	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1:ENST00000481522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	50	2	2.30089	2.3994299999999997	2.49797	0.00843736	6.96659e-4	0.0546021	0.00846751
chr15	58596660	58596760	15310668	0	-	0.31	(0.29,0.33]	chr15	1208273	80	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.17855	2.3994	2.62025	0.0183673	0.00573581	0.0928041	0.0417422
chr10	70202914	70202994	11560607	0	-	0.3125	(0.29,0.33]	chr10	879625	2	UTR3	UTR3:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8	protein_coding	protein_coding	protein_coding	protein_coding	23	78	2	1.99718	2.39919	2.8012	4.64518e-4	1.03251e-4	0.0061569	0.00200917
chr17	76736354	76736449	16692121	0	-	0.652632	(0.59,1]	chr17	1375075	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	SRSF2:MIR636	ENSG00000161547.17:ENSG00000283805.1	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000452355.7:ENST00000508921.7:ENST00000384825.1:ENST00000583836.1:ENST00000358156.6	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	13	152	2	1.50151	2.399145	3.29678	0.02469	1.18033e-5	0.113136	3.47435e-4
chr12	62384152	62384227	12914312	0	+	0.32	(0.29,0.33]	chr12	1006461	2	CDS	CDS:EXON_MRNA	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10:ENST00000549268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	1.66607	2.399095	3.13212	0.0424383	0.00551048	0.160073	0.0414592
chr17	59110049	59110146	16617306	0	-	0.329897	(0.29,0.33]	chr17	1365438	3	UTR3	UTR3:EXON_MRNA	SKA2	ENSG00000182628.13	ENST00000330137.12	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.71587	2.39878	3.08169	0.0253939	0.00114594	0.115076	0.0130468
chr2	96894021	96894051	2792535	0	-	0.733333	(0.59,1]	chr2	249299	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	121	2	2.37649	2.39869	2.42089	0.00138009	0.00101098	0.0149186	0.0112623
chr17	59694046	59694143	16295598	0	+	0.319588	(0.29,0.33]	chr17	1321774	3	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000579456.5:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	46	168	2	2.16584	2.39853	2.63122	1.03612e-4	1.33654e-6	0.00201586	5.1213e-5
chr2	74214828	74214926	1891747	0	+	0.336735	(0.33,0.36]	chr2	179209	7	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	55	2	2.13794	2.3985250000000002	2.65911	9.42656e-4	4.11639e-4	0.0106522	0.00604771
chr14	101994253	101994324	14495246	0	+	0.478873	(0.455,0.49]	chr14	1132999	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	41	2	2.04847	2.39826	2.74805	0.0192065	3.3051e-4	0.0943643	0.00470169
chr7	104671075	104671175	8445859	0	+	0.44	(0.42,0.455]	chr7	645154	16	INTRON	INTRON	LHFPL3	ENSG00000187416.13	ENST00000424859.7:ENST00000401970.3:ENST00000683240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	2.04415	2.398225	2.7523	0.0153283	0.0101476	0.0828908	0.0627153
chr21	33558961	33559056	18101250	0	+	0.368421	(0.36,0.39]	chr21	1534538	16	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	47	2	2.2842	2.397865	2.51153	0.0049656	3.37219e-4	0.0381176	0.00475813
chr10	5457092	5457190	10909070	0	+	0.27551	[0,0.29]	chr10	830430	2	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.16074	2.3977950000000003	2.63485	0.0222978	7.34761e-4	0.105845	0.00880003
chr1	110012947	110012999	401820	0	+	0.480769	(0.455,0.49]	chr1	39281	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000475081.1:ENST00000359172.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.12994	2.397785	2.66563	0.0304832	0.0043075	0.130204	0.0334284
chr12	53415267	53415365	12886221	0	+	0.469388	(0.455,0.49]	chr12	1002329	42	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.12994	2.397785	2.66563	0.0304832	0.0043075	0.130204	0.0334284
chr9	128695724	128695821	10480937	0	+	0.391753	(0.39,0.42]	chr9	790686	12	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	11	49	2	1.95674	2.39777	2.8388	0.00322149	6.72604e-4	0.026992	0.00873144
chr5	168506020	168506109	6369237	0	+	0.404494	(0.39,0.42]	chr5	494731	1	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5:ENST00000518757.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	28	2	2.18155	2.397735	2.61392	0.0283931	0.0017565	0.127654	0.0171455
chr11	10507893	10507979	12270794	0	-	0.395349	(0.39,0.42]	chr11	948733	1	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR4485:MTRNR2L8	ENSG00000283813.1:ENSG00000255823.5	ENST00000638094.1:ENST00000536684.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	1034	4555	2	2.37865	2.3974	2.41615	4.5383e-7	1.6895e-7	2.03932e-5	9.90709e-6
chr1	44747651	44747700	173852	0	+	0.387755	(0.36,0.39]	chr1	22321	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	35	2	1.96997	2.3973649999999997	2.82476	0.00890772	8.21459e-4	0.0565003	0.0102028
chr1	236571350	236571411	1568406	0	-	0.508197	(0.49,0.53]	chr1	157038	1	CDS	CDS:EXON_MRNA	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.38097	2.3973050000000002	2.41364	0.0425419	0.0112538	0.167547	0.0665375
chr7	135927352	135927451	9085554	0	-	0.343434	(0.33,0.36]	chr7	693646	7	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	24	93	2	2.26009	2.39729	2.53449	2.15752e-4	3.5845e-5	0.00361336	7.84153e-4
chr16	1701204	1701302	15488693	0	+	0.377551	(0.36,0.39]	chr16	1226190	11	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	8	40	2	2.32678	2.3972749999999996	2.46777	0.0193538	4.3886e-4	0.0943643	0.00591388
chr1	40422289	40422383	154038	0	+	0.542553	(0.53,0.59]	chr1	19281	3	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	18	89	2	1.62128	2.39722	3.17316	0.00509231	7.8686e-5	0.0376359	0.00164157
chr3	195788220	195788320	4661149	0	-	0.58	(0.53,0.59]	chr3	385270	96	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	33	2	1.48483	2.3971299999999998	3.30943	0.0472509	0.0018255	0.172726	0.0183913
chr1	65257037	65257137	249868	0	+	0.47	(0.455,0.49]	chr1	28627	20	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.10347	2.3970000000000002	2.69053	0.0313707	0.0182983	0.13127	0.0925808
chr11	62766242	62766276	11973899	0	+	0.470588	(0.455,0.49]	chr11	917908	1	CDS	CDS:UTR3:EXON_MRNA	POLR2G	ENSG00000168002.12	ENST00000301788.12:ENST00000525455.5:ENST00000524819.5:ENST00000531944.5:ENST00000527435.5:ENST00000526368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.10347	2.3970000000000002	2.69053	0.0313707	0.0182983	0.13127	0.0925808
chr12	67302322	67302419	12934028	0	+	0.463918	(0.455,0.49]	chr12	1008084	1	CDS	CDS:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.10347	2.3970000000000002	2.69053	0.0313707	0.0182983	0.13127	0.0925808
chr15	49155524	49155578	15267406	0	-	0.481481	(0.455,0.49]	chr15	1204475	1	CDS_START	CDS_START:CDS:EXON_MRNA	COPS2	ENSG00000166200.15	ENST00000388901.10:ENST00000299259.10:ENST00000542928.5:ENST00000558843.5:ENST00000561248.1:ENST00000558545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.10347	2.3970000000000002	2.69053	0.0313707	0.0182983	0.13127	0.0925808
chr7	152176285	152176381	9135322	0	-	0.458333	(0.455,0.49]	chr7	698399	2	CDS	CDS:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.10347	2.3970000000000002	2.69053	0.0313707	0.0182983	0.13127	0.0925808
chr3	47871007	47871105	4163955	0	-	0.602041	(0.59,1]	chr3	348527	3	CDS	CDS:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.09833	2.39655	2.69477	0.020208	0.0150311	0.0978331	0.0816517
chr1	149886540	149886640	1287109	0	-	0.58	(0.53,0.59]	chr1	127854	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	19	123	2	2.06935	2.396465	2.72358	0.00131034	1.35411e-5	0.0137851	3.87872e-4
chr1	36136840	36136930	939918	0	-	0.422222	(0.42,0.455]	chr1	98933	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TRAPPC3	ENSG00000054116.12	ENST00000617904.4:ENST00000616074.4:ENST00000616395.4:ENST00000373166.8:ENST00000462715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.87908	2.396405	2.91373	0.0189336	0.00892357	0.0958835	0.0567495
chr5	154814680	154814778	6315017	0	+	0.561224	(0.53,0.59]	chr5	492515	7	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	15	87	2	2.02632	2.396395	2.76647	0.00103756	2.92577e-4	0.0115312	0.00464297
chr11	119019221	119019321	12161667	0	+	0.53	(0.49,0.53]	chr11	937583	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:PRIMIRNA:INTRON	ENSG00000283704:TRAPPC4	ENSG00000283704.1:ENSG00000196655.12	ENST00000577421.1:ENST00000527680.1:ENST00000533058.5:ENST00000533632.6:ENST00000359005.8:ENST00000531290.5:ENST00000434101.6:ENST00000525303.5:ENST00000528230.5:ENST00000447216.2:ENST00000525079.5:ENST00000533012.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	6	34	2	2.09506	2.39626	2.69746	0.00820526	0.00380414	0.05339	0.0317723
chrX	37730444	37730543	18656834	0	+	0.353535	(0.33,0.36]	chrX	1591369	21	UTR3	UTR3:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.27335	2.39611	2.51887	0.0358636	0.00837768	0.147298	0.0541213
chr15	83138871	83138971	15417647	0	-	0.35	(0.33,0.36]	chr15	1219251	113	UTR3	UTR3:EXON_MRNA:INTRON	HDGFL3	ENSG00000166503.9	ENST00000568294.5:ENST00000299633.7	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.0111	2.396025	2.78095	0.0124964	0.00388614	0.071421	0.0322851
chr1	114726298	114726386	1239688	0	-	0.420455	(0.42,0.455]	chr1	121378	2	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000483030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	46	2	2.18693	2.3959849999999996	2.60504	0.00201537	0.00200137	0.0197874	0.0189555
chr1	21852160	21852233	890948	0	-	0.616438	(0.59,1]	chr1	92382	2	CDS	CDS:EXON_MRNA:INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000493940.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	122	2	2.01707	2.395835	2.7746	0.00551697	2.11789e-4	0.0415005	0.00329129
chr17	81888240	81888329	16709768	0	-	0.58427	(0.53,0.59]	chr17	1377763	1	CDS	CDS:EXON_MRNA	ALYREF	ENSG00000183684.8	ENST00000505490.3	protein_coding	protein_coding	protein_coding	protein_coding	8	47	2	1.60439	2.39573	3.18707	0.0243675	3.55681e-4	0.111797	0.00539248
chr10	68984185	68984283	11093419	0	+	0.346939	(0.33,0.36]	chr10	843302	15	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	16	65	2	2.02052	2.3956549999999996	2.77079	0.00260369	3.4875e-5	0.0238297	7.6567e-4
chr3	150542577	150542673	4517202	0	-	0.291667	(0.29,0.33]	chr3	374942	7	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	14	58	2	1.89656	2.395345	2.89413	0.00981789	1.44116e-5	0.06149	3.72082e-4
chr21	14485617	14485715	18163799	0	-	0.27551	[0,0.29]	chr21	1542428	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	29	2	2.28041	2.3951000000000002	2.50979	0.00608277	0.00240042	0.0438976	0.0217482
chr16	88876589	88876686	16075718	0	-	0.597938	(0.59,1]	chr16	1291936	19	UTR3	UTR3:EXON_MRNA	CBFA2T3	ENSG00000129993.15	ENST00000268679.9:ENST00000327483.9:ENST00000563856.1:ENST00000563920.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	70	2	2.14957	2.395085	2.6406	0.0126053	0.00193045	0.0719957	0.0192201
chr8	108214606	108214661	10002426	0	-	0.436364	(0.42,0.455]	chr8	754160	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	43	2	1.98051	2.395055	2.8096	0.00383646	0.00253237	0.0310411	0.0233955
chr7	139571929	139572029	9103378	0	-	0.37	(0.36,0.39]	chr7	694628	105	UTR3	UTR3:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.85874	2.3950500000000003	2.93136	0.0415243	0.00811967	0.164804	0.0528637
chr17	42841875	42841974	16230330	0	+	0.464646	(0.455,0.49]	chr17	1313600	4	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	10	52	2	1.94735	2.395025	2.8427	0.00680997	1.88409e-4	0.0465162	0.00301567
chr12	108646903	108647003	13530492	0	-	0.3	(0.29,0.33]	chr12	1063929	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	79	2	1.78222	2.394945	3.00767	0.00400355	3.18598e-6	0.0324137	1.06184e-4
chr12	53512651	53512750	13339475	0	-	0.393939	(0.39,0.42]	chr12	1049176	7	UTR3	UTR3:EXON_MRNA:INTRON	ATF7-NPFF:ATF7	ENSG00000267281.3:ENSG00000170653.19	ENST00000591834.1:ENST00000548446.6:ENST00000420353.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.30055	2.394815	2.48908	0.0101318	0.0070645	0.0626311	0.0477419
chr1	67412206	67412306	1079128	0	-	0.35	(0.33,0.36]	chr1	110137	45	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	19	68	2	1.54109	2.39461	3.24813	0.0114755	4.40268e-6	0.0677573	1.39714e-4
chr18	9954506	9954604	16756135	0	+	0.255102	[0,0.29]	chr18	1381801	4	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	30	107	2	2.1224	2.39447	2.66654	6.69978e-4	3.30296e-6	0.0087033	1.0931e-4
chr10	102162834	102162928	11226688	0	+	0.393617	(0.39,0.42]	chr10	854877	7	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	22	2	1.79377	2.39442	2.99507	0.0299302	0.00637824	0.129773	0.0449937
chr1	54032049	54032149	1027174	0	-	0.31	(0.29,0.33]	chr1	106598	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5:ENST00000371341.5:ENST00000470395.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	37	2	1.86069	2.394415	2.92814	0.021654	1.23255e-4	0.103926	0.00214023
chr2	15627053	15627145	1650967	0	+	0.391304	(0.39,0.42]	chr2	162969	1	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	41	2	1.87119	2.39438	2.91757	0.0373134	1.19356e-4	0.152293	0.00208353
chr8	102253914	102254011	9982630	0	-	0.319588	(0.29,0.33]	chr8	753097	18	UTR3	UTR3:EXON_MRNA	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000517465.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	22	2	2.24226	2.394345	2.54643	0.0306054	0.0026976	0.130226	0.0236059
chr12	98535037	98535137	13036728	0	+	0.38	(0.36,0.39]	chr12	1014956	8	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.02118	2.394335	2.76749	0.0251625	0.00287858	0.117055	0.0247002
chr17	41754983	41755078	16542974	0	-	0.568421	(0.53,0.59]	chr17	1356256	5	UTR3	UTR3:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	6	40	2	2.3186	2.3943000000000003	2.47	0.0089333	0.00299541	0.0567495	0.0256157
chr1	35925666	35925765	139013	0	+	0.383838	(0.36,0.39]	chr1	17250	61	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.89872	2.3939500000000002	2.88918	0.056542	0.00212816	0.19417	0.0206577
chr12	6919664	6919763	12715456	0	+	0.525253	(0.49,0.53]	chr12	987255	2	CDS	CDS:EXON_MRNA	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000538763.5:ENST00000545045.6:ENST00000535366.5:ENST00000535275.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	1.66773	2.393325	3.11892	0.0381288	0.00398244	0.149227	0.0322851
chr2	86144795	86144881	2772785	0	-	0.5	(0.49,0.53]	chr2	246309	6	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.66773	2.393325	3.11892	0.0381288	0.00398244	0.149227	0.0322851
chr12	57234552	57234648	12902157	0	+	0.520833	(0.49,0.53]	chr12	1005218	3	UTR3	UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	41	2	2.3044	2.39321	2.48202	0.00696379	0.00138956	0.0474632	0.0143689
chr16	2767669	2767768	15494952	0	+	0.646465	(0.59,1]	chr16	1227802	63	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000572883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	89	2	2.3821	2.3931449999999996	2.40419	0.00554753	0.00139249	0.0417049	0.0143941
chr17	16441739	16441832	16142094	0	+	0.569892	(0.53,0.59]	chr17	1300762	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000658116.1:ENST00000475953.5:ENST00000470491.6:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	72	453	2	1.75101	2.392845	3.03468	5.70643e-4	2.64916e-8	0.0078	1.7936e-6
chr1	633528	633628	823366	0	-	0.37	(0.36,0.39]	chr1	81486	5	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	19	76	2	1.80075	2.392835	2.98492	0.00322673	1.36722e-5	0.0281987	3.55439e-4
chr2	175927272	175927372	3028110	0	-	0.38	(0.36,0.39]	chr2	268146	35	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.16717	2.3926350000000003	2.6181	0.0152504	0.00176908	0.0828908	0.0172426
chr10	34390843	34390943	11449998	0	-	0.28	[0,0.29]	chr10	873074	62	INTRON	INTRON	PARD3	ENSG00000148498.16	ENST00000545260.5:ENST00000545693.5:ENST00000374789.8:ENST00000374788.8:ENST00000346874.9:ENST00000374794.8:ENST00000350537.9:ENST00000374790.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.96069	2.39256	2.82443	0.0180803	0.0162003	0.0920398	0.0866586
chr2	65088592	65088690	2708073	0	-	0.408163	(0.39,0.42]	chr2	241348	1	CDS	CDS:EXON_MRNA:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	55	2	2.149	2.3923300000000003	2.63566	0.0149155	8.67573e-5	0.0812412	0.00161602
chr16	30067354	30067366	15628402	0	+	0.5	(0.49,0.53]	chr16	1239780	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	97	2	2.34474	2.3920399999999997	2.43934	8.56081e-4	5.3846e-5	0.00999001	0.00119955
chr8	29052973	29053072	9250684	0	+	0.434343	(0.42,0.455]	chr8	708707	15	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000397358.7:ENST00000522468.1:ENST00000561377.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	33	2	2.22933	2.392035	2.55474	0.0102262	0.00228741	0.062872	0.0210026
chr14	50068567	50068643	14276550	0	+	0.552632	(0.53,0.59]	chr14	1116067	1	EXON_SMALL	EXON_SMALL	RN7SKP193	ENSG00000201358.1	ENST00000364488.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	14	75	2	1.69448	2.39203	3.08958	0.00597529	1.30551e-4	0.0428562	0.0024373
chrX	120158681	120158750	18843885	0	+	0.594203	(0.59,1]	chrX	1605732	2	UTR5	UTR5:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	6	71	2	2.0452	2.391905	2.73861	0.0179494	0.00125376	0.0939469	0.0138274
chr15	90500301	90500398	15100798	0	+	0.371134	(0.36,0.39]	chr15	1188226	3	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000558957.1:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.32678	2.39167	2.45656	0.0193538	0.0100637	0.0943643	0.0624019
chr7	75185861	75185957	8857914	0	-	0.385417	(0.36,0.39]	chr7	676725	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	GTF2IP1	ENSG00000277053.4	ENST00000618412.4:ENST00000622829.4	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	4	20	2	2.32678	2.39167	2.45656	0.0193538	0.0100637	0.0943643	0.0624019
chr3	128813815	128813913	3729274	0	+	0.520408	(0.49,0.53]	chr3	318662	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000482525.5:ENST00000675497.1:ENST00000674589.1:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	78	2	1.78765	2.391575	2.9955	0.0046588	2.81012e-5	0.0360874	6.42183e-4
chr9	35697415	35697509	10639429	0	-	0.617021	(0.59,1]	chr9	804959	6	UTR3	UTR3:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	12	130	2	2.39073	2.3914999999999997	2.39227	0.0027229	4.62175e-4	0.0245443	0.00613242
chr15	80121765	80121820	15045240	0	+	0.509091	(0.49,0.53]	chr15	1183641	2	CDS	CDS:EXON_MRNA	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1:ENST00000561017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	40	2	2.18417	2.39149	2.59881	0.00578816	0.00184545	0.0427749	0.0178046
chr1	52385160	52385211	1018816	0	-	0.45098	(0.42,0.455]	chr1	105600	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.71996	2.391445	3.06293	0.0542346	0.00492128	0.199653	0.0366648
chr14	90401258	90401332	14455536	0	+	0.432432	(0.42,0.455]	chr14	1128569	1	CDS	CDS:UTR5:EXON_MRNA	CALM1	ENSG00000198668.13	ENST00000557020.5:ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553995.5:ENST00000556757.5:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000555267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.71996	2.391445	3.06293	0.0542346	0.00492128	0.199653	0.0366648
chr12	101393891	101393988	13506196	0	-	0.391753	(0.39,0.42]	chr12	1061580	9	UTR3	UTR3:EXON_MRNA	ARL1	ENSG00000120805.14	ENST00000261636.13	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	2.34349	2.391355	2.43922	0.0169272	9.01224e-4	0.0890655	0.0102618
chr1	206733792	206733890	683413	0	+	0.55102	(0.53,0.59]	chr1	69024	12	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.0693	2.39124	2.71318	0.0160468	0.00340745	0.0860154	0.0283456
chr20	47224396	47224476	17993257	0	-	0.5375	(0.53,0.59]	chr20	1524952	2	CDS	CDS:EXON_MRNA:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	1.88327	2.391215	2.89916	0.0298124	0.00890406	0.129773	0.0565003
chr2	96303244	96303330	2790582	0	-	0.511628	(0.49,0.53]	chr2	248855	2	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	6	36	2	2.11783	2.3911100000000003	2.66439	0.0142725	0.00134122	0.0780078	0.0139818
chr16	23571089	23571189	15594609	0	+	0.34	(0.33,0.36]	chr16	1236627	6	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.80608	2.39107	2.97606	0.0416784	0.00871774	0.157445	0.0558165
chr1	201146804	201146869	1446614	0	-	0.615385	(0.59,1]	chr1	145203	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.93269	2.391065	2.84944	0.0257004	0.0128238	0.116399	0.0719798
chr10	69398672	69398750	11096825	0	+	0.641026	(0.59,1]	chr10	843815	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	1.93269	2.391065	2.84944	0.0257004	0.0128238	0.116399	0.0719798
chr20	43715987	43716087	17794526	0	+	0.64	(0.59,1]	chr20	1504264	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	1.93269	2.391065	2.84944	0.0257004	0.0128238	0.116399	0.0719798
chrX	40935765	40935864	19047381	0	-	0.707071	(0.59,1]	chrX	1619017	9	EXON_PSEUDO	EXON_PSEUDO	RPS2P55	ENSG00000216866.5	ENST00000397318.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	25	262	2	2.18274	2.390785	2.59883	3.93891e-4	9.63161e-5	0.00541075	0.0019118
chrX	77968688	77968780	19129666	0	-	0.48913	(0.455,0.49]	chrX	1626916	9	UTR3	UTR3:EXON_MRNA	PGAM4	ENSG00000226784.3	ENST00000458128.3	protein_coding	protein_coding	protein_coding	protein_coding	16	82	2	2.20322	2.39078	2.57834	8.8931e-4	7.91016e-5	0.0108355	0.00150254
chr3	152299404	152299502	3816852	0	+	0.520408	(0.49,0.53]	chr3	325627	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	59	2	1.26856	2.3904199999999998	3.51228	0.0541847	7.99738e-6	0.199653	2.28719e-4
chr2	27070561	27070651	2569023	0	-	0.377778	(0.36,0.39]	chr2	231076	2	UTR3	UTR3:EXON_MRNA	OST4	ENSG00000228474.6	ENST00000456793.2:ENST00000447619.5:ENST00000429985.1	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	1.78505	2.39037	2.99569	0.0228572	7.37624e-5	0.108215	0.00141413
chr2	27022218	27022318	1690515	0	+	0.49	(0.455,0.49]	chr2	165272	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MAPRE3	ENSG00000084764.12	ENST00000233121.7:ENST00000494788.1:ENST00000405074.7:ENST00000475633.5:ENST00000481222.5:ENST00000491354.5:ENST00000648289.1:ENST00000474367.1:ENST00000458529.5:ENST00000402218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	23	2	2.27152	2.39028	2.50904	0.0310515	0.00786769	0.131262	0.0514287
chr12	50475525	50475604	12872177	0	+	0.493671	(0.49,0.53]	chr12	1000195	1	CDS	CDS:UTR3:EXON_MRNA	LARP4	ENSG00000161813.22	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000614335.4:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.13501	2.390145	2.64528	0.0287874	0.0202736	0.128869	0.0984041
chr5	113013780	113013879	6153896	0	+	0.333333	(0.33,0.36]	chr5	480731	4	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	40	2	2.31697	2.39008	2.46319	0.00966431	4.66633e-4	0.0606263	0.0061711
chr1	109311854	109311953	1219448	0	-	0.494949	(0.49,0.53]	chr1	118935	24	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.99044	2.3900300000000003	2.78962	0.0435903	0.0129044	0.170594	0.0725185
chr11	6476820	6476917	12249652	0	-	0.515464	(0.49,0.53]	chr11	946744	23	UTR3	UTR3:EXON_MRNA	ARFIP2	ENSG00000132254.13	ENST00000614314.4:ENST00000254584.6:ENST00000396777.8:ENST00000531037.5:ENST00000445086.6:ENST00000423813.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.99044	2.3900300000000003	2.78962	0.0435903	0.0129044	0.170594	0.0725185
chr1	53226971	53227044	1021879	0	-	0.410959	(0.39,0.42]	chr1	106071	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAGOH	ENSG00000162385.11	ENST00000371470.8:ENST00000371466.4:ENST00000495868.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	57	2	1.29442	2.389995	3.48557	0.0379514	9.58193e-6	0.154813	2.6635e-4
chr10	91227514	91227603	11187223	0	+	0.393258	(0.39,0.42]	chr10	850389	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6:ENST00000490164.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	36	2	2.27012	2.3899299999999997	2.50974	0.00945558	0.00123319	0.0594007	0.0131207
chrX	154353376	154353457	19278009	0	-	0.555556	(0.53,0.59]	chrX	1638267	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000466325.1:ENST00000415241.1:ENST00000438732.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	62	2	1.72504	2.38992	3.0548	0.0213174	5.01853e-5	0.102501	0.00103096
chr4	2929202	2929299	4687496	0	+	0.402062	(0.39,0.42]	chr4	388871	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	27	2	1.89145	2.389905	2.88836	0.0119663	0.0102432	0.0700178	0.062872
chr2	222619644	222619737	3196879	0	-	0.397849	(0.39,0.42]	chr2	281678	1	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.18155	2.389495	2.59744	0.0283931	0.00572981	0.127654	0.0417368
chr2	74152724	74152822	2740197	0	-	0.22449	[0,0.29]	chr2	243880	3	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	1.94841	2.389405	2.8304	0.0427374	0.0121878	0.168094	0.0701019
chr7	74195689	74195785	8334067	0	+	0.5	(0.49,0.53]	chr7	634971	5	UTR3	UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	110	2	2.2395	2.38924	2.53898	1.64482e-4	1.43445e-4	0.0029267300000000002	0.00241812
chr1	202746232	202746323	1451907	0	-	0.406593	(0.39,0.42]	chr1	145831	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000649770.1:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1:ENST00000649089.1:ENST00000235790.9:ENST00000650422.1:ENST00000649929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	34	2	2.10425	2.388605	2.67296	0.00810106	0.00159022	0.0528637	0.0168452
chr3	38491853	38491952	3421831	0	+	0.343434	(0.33,0.36]	chr3	297512	87	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.07736	2.38843	2.6995	0.0442037	0.017838	0.172163	0.0934844
chr6	157943032	157943130	7516749	0	+	0.357143	(0.33,0.36]	chr6	573600	3	UTR3	UTR3:EXON_MRNA	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.07736	2.38843	2.6995	0.0442037	0.017838	0.172163	0.0934844
chr7	135162396	135162496	9082205	0	-	0.36	(0.33,0.36]	chr7	693268	144	INTRON	INTRON	CYREN	ENSG00000122783.17	ENST00000459937.5	protein_coding	processed_transcript	protein_coding	processed_transcript	3	14	2	2.07736	2.38843	2.6995	0.0442037	0.017838	0.172163	0.0934844
chr8	48060728	48060828	9316851	0	+	0.36	(0.33,0.36]	chr8	713640	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UBE2V2	ENSG00000169139.12	ENST00000523432.5:ENST00000521346.5:ENST00000523111.7:ENST00000518360.5:ENST00000517630.5:ENST00000520809.1:ENST00000520595.2:ENST00000521628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.07736	2.38843	2.6995	0.0442037	0.017838	0.172163	0.0934844
chr1	52089627	52089726	192307	0	+	0.262626	[0,0.29]	chr1	24661	30	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000313334.13	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.95226	2.388345	2.82443	0.0282226	0.0180803	0.124386	0.0920398
chr1	205715698	205715798	1462012	0	-	0.43	(0.42,0.455]	chr1	147460	30	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	2.3873	2.3883	2.3893	0.00221606	0.00131117	0.0205138	0.0143177
chr8	18062350	18062423	9732862	0	-	0.342466	(0.33,0.36]	chr8	736303	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000517409.2:ENST00000519545.6:ENST00000636719.1:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	21	2	2.0111	2.3883	2.7655	0.0175892	0.0124964	0.0918323	0.071421
chr1	46675437	46675535	983390	0	-	0.44898	(0.42,0.455]	chr1	103800	9	UTR3	UTR3:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000481623.2:ENST00000674495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	18	2	2.20599	2.38825	2.57051	0.0265466	0.0227797	0.120071	0.105293
chr1	77639048	77639148	1111383	0	-	0.45	(0.42,0.455]	chr1	111662	2	SS5_PROX	SS5_PROX:INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000370798.5:ENST00000433749.5:ENST00000414381.5:ENST00000463166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.20599	2.38825	2.57051	0.0265466	0.0227797	0.120071	0.105293
chr15	63733071	63733145	15336324	0	-	0.445946	(0.42,0.455]	chr15	1210618	3	CDS	CDS:EXON_MRNA:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.20599	2.38825	2.57051	0.0265466	0.0227797	0.120071	0.105293
chr2	171728361	171728418	2207874	0	+	0.421053	(0.42,0.455]	chr2	202083	2	CDS	CDS:EXON_MRNA	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000397119.8:ENST00000410079.7:ENST00000508530.5:ENST00000409197.5:ENST00000409317.5:ENST00000409773.5:ENST00000409453.5:ENST00000482454.5:ENST00000479806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.20599	2.38825	2.57051	0.0265466	0.0227797	0.120071	0.105293
chr5	53603451	53603530	5968846	0	+	0.443038	(0.42,0.455]	chr5	467963	1	CDS	CDS:UTR3:EXON_MRNA	NDUFS4	ENSG00000164258.12	ENST00000507026.5:ENST00000502423.5:ENST00000296684.10:ENST00000506974.5:ENST00000506765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.20599	2.38825	2.57051	0.0265466	0.0227797	0.120071	0.105293
chr7	26212081	26212108	8183118	0	+	0.444444	(0.42,0.455]	chr7	624435	1	CDS	CDS:UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.20599	2.38825	2.57051	0.0265466	0.0227797	0.120071	0.105293
chr6	30704412	30704512	7659041	0	-	0.54	(0.53,0.59]	chr6	584223	9	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	8	60	2	1.88327	2.388115	2.89296	0.0298124	5.81444e-5	0.129773	0.00116944
chr11	118758773	118758837	12625524	0	-	0.46875	(0.455,0.49]	chr11	979552	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	50	2	2.09123	2.38804	2.68485	0.00905243	2.15323e-4	0.0574173	0.0033324
chr1	112669542	112669605	411466	0	+	0.349206	(0.33,0.36]	chr1	40534	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000466066.1:ENST00000476820.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	44	2	2.22102	2.387985	2.55495	0.00736622	2.66779e-4	0.0490627	0.00398163
chr3	160432437	160432515	3853105	0	+	0.487179	(0.455,0.49]	chr3	327488	3	CDS	CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000486711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	49	2	2.01192	2.387955	2.76399	0.00331234	8.75629e-4	0.0276741	0.0106963
chr6	163563419	163563494	7540754	0	+	0.6	(0.59,1]	chr6	575634	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000537041.5:ENST00000544823.5:ENST00000537883.5:ENST00000540719.1:ENST00000544361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	57	2	2.01575	2.387905	2.76006	0.0201728	0.00330486	0.0978331	0.027613
chr12	68659382	68659481	12939563	0	+	0.343434	(0.33,0.36]	chr12	1008340	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RAP1B	ENSG00000127314.18	ENST00000393436.9:ENST00000250559.14:ENST00000450214.6:ENST00000463493.5:ENST00000537460.5:ENST00000543393.5:ENST00000540209.5:ENST00000542145.5:ENST00000539091.5:ENST00000543697.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	46	2	1.42742	2.38787	3.34832	0.0305501	2.58174e-5	0.130226	5.98209e-4
chr8	100948658	100948723	9976509	0	-	0.461538	(0.455,0.49]	chr8	752762	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000521309.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5:ENST00000418997.1:ENST00000437293.5:ENST00000523131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	2.08503	2.3877800000000002	2.69053	0.0182983	0.0158994	0.0925808	0.0856643
chr21	31668478	31668578	18093491	0	+	0.44	(0.42,0.455]	chr21	1533903	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	136	2	2.07388	2.38753	2.70118	4.46316e-4	5.63297e-6	0.00635425	1.71069e-4
chr17	19446263	19446361	16472798	0	-	0.632653	(0.59,1]	chr17	1345836	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC004448.5:RPS2P46	ENSG00000235979.9:ENSG00000189343.7	ENST00000658570.1:ENST00000627753.1:ENST00000668984.1:ENST00000629630.1:ENST00000655270.1:ENST00000456537.6:ENST00000458332.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	8	65	2	1.35963	2.387495	3.41536	0.0471501	0.00164655	0.17993	0.0163443
chr1	26278523	26278618	108903	0	+	0.442105	(0.42,0.455]	chr1	12966	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	55	2	2.16396	2.3874050000000002	2.61085	0.00149934	7.93561e-4	0.0152367	0.00988333
chr12	56137498	56137586	12898352	0	+	0.545455	(0.53,0.59]	chr12	1004272	1	CDS	CDS:EXON_MRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000547667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.2596	2.3872999999999998	2.515	0.0292633	0.0185443	0.129773	0.0948733
chr15	64683481	64683581	14978108	0	+	0.55	(0.53,0.59]	chr15	1177327	19	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.2596	2.3872999999999998	2.515	0.0292633	0.0185443	0.129773	0.0948733
chr17	76626005	76626095	16691358	0	-	0.544444	(0.53,0.59]	chr17	1374936	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ST6GALNAC1	ENSG00000070526.15	ENST00000592042.5:ENST00000156626.12:ENST00000359088.9:ENST00000585633.1:ENST00000588375.1:ENST00000590784.1:ENST00000589004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.2596	2.3872999999999998	2.515	0.0292633	0.0185443	0.129773	0.0948733
chr19	49335713	49335786	17369673	0	+	0.547945	(0.53,0.59]	chr19	1442731	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CD37	ENSG00000104894.12	ENST00000391859.6:ENST00000597033.5:ENST00000426897.6:ENST00000598095.5:ENST00000595725.5:ENST00000323906.9:ENST00000593512.5:ENST00000597852.5:ENST00000535669.6:ENST00000596426.5:ENST00000598134.1:ENST00000597602.1:ENST00000595660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	22	2	2.2596	2.3872999999999998	2.515	0.0292633	0.0185443	0.129773	0.0948733
chr2	70986236	70986334	2728032	0	-	0.55102	(0.53,0.59]	chr2	243102	4	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	22	2	2.2596	2.3872999999999998	2.515	0.0292633	0.0185443	0.129773	0.0948733
chrX	154350118	154350207	19277965	0	-	0.539326	(0.53,0.59]	chrX	1638245	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000498491.5:ENST00000462590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	68	2	2.09406	2.3872299999999997	2.6804	0.00212471	4.7595e-4	0.0198408	0.00672665
chr10	22535537	22535635	11411105	0	-	0.316327	(0.29,0.33]	chr10	869854	8	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.71587	2.387025	3.05818	0.0253939	3.19046e-4	0.115076	0.00491578
chr12	57721279	57721371	12904354	0	+	0.5	(0.49,0.53]	chr12	1005910	5	UTR3	UTR3:EXON_MRNA	OS9	ENSG00000135506.16	ENST00000315970.12:ENST00000257966.12:ENST00000435406.6:ENST00000551035.5:ENST00000413095.6:ENST00000389142.9:ENST00000549307.5:ENST00000546916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	1.90685	2.386975	2.8671	0.0534351	0.0100489	0.184995	0.0623334
chr6	160029549	160029602	7528149	0	+	0.490566	(0.49,0.53]	chr6	574734	1	CDS	CDS:EXON_MRNA	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.90685	2.386975	2.8671	0.0534351	0.0100489	0.184995	0.0623334
chr14	102022750	102022815	14495580	0	+	0.523077	(0.49,0.53]	chr14	1133145	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.05119	2.3868549999999997	2.72252	0.0360743	0.0161474	0.145024	0.0860154
chrX	65740960	65741057	18716375	0	+	0.515464	(0.49,0.53]	chrX	1596885	12	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	11	63	2	1.52104	2.38674	3.25244	0.0273533	1.25784e-5	0.123591	3.31924e-4
chr11	67611487	67611569	11997079	0	+	0.646341	(0.59,1]	chr11	923222	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000526770.5:ENST00000526169.1:ENST00000533919.5:ENST00000527355.5:ENST00000527923.1:ENST00000531250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	48	2	2.11074	2.3867399999999996	2.66274	0.0305	0.00482151	0.130204	0.0365653
chr17	2682486	2682584	16086748	0	+	0.306122	(0.29,0.33]	chr17	1293760	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000675390.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	22	2	2.27411	2.386735	2.49936	0.00917022	0.00686811	0.0580029	0.0468903
chr16	28823359	28823458	15620236	0	+	0.818182	(0.59,1]	chr16	1238391	1	CDS	CDS:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	43	2	1.8502	2.3865	2.9228	0.0334531	0.00981698	0.140296	0.0612992
chr12	54231775	54231875	13342844	0	-	0.39	(0.36,0.39]	chr12	1049602	4	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	8	36	2	2.23949	2.3863000000000003	2.53311	0.00345778	0.00261122	0.0293796	0.0230705
chr2	61536609	61536709	2690976	0	-	0.57	(0.53,0.59]	chr2	240460	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	42	2	1.97928	2.386195	2.79311	0.0218546	6.84253e-4	0.104785	0.00836671
chr5	72913868	72913967	6029442	0	+	0.262626	[0,0.29]	chr5	472817	53	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	18	2	2.3458	2.386125	2.42645	0.0123114	0.0116272	0.070688	0.0685835
chr19	39435606	39435657	17563247	0	-	0.627451	(0.59,1]	chr19	1475630	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	353	2	1.97385	2.38606	2.79827	0.00169996	5.75151e-6	0.01759	1.74411e-4
chr2	216190279	216190334	2380562	0	+	0.454545	(0.42,0.455]	chr2	213847	2	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	46	2	2.11785	2.38582	2.65379	0.0154862	2.5885e-4	0.0836691	0.00388572
chr19	46609248	46609344	17357583	0	+	0.40625	(0.39,0.42]	chr19	1440686	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CALM3	ENSG00000160014.17	ENST00000391918.6:ENST00000597743.5:ENST00000477244.5:ENST00000291295.14:ENST00000602169.2:ENST00000597868.5:ENST00000599839.5:ENST00000596362.1:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	95	2	2.25836	2.38575	2.51314	2.44704e-4	6.46079e-5	0.00370204	0.00138111
chr18	35977409	35977504	16824843	0	+	0.389474	(0.36,0.39]	chr18	1387517	1	CDS	CDS:EXON_MRNA:INTRON	C18orf21	ENSG00000141428.17	ENST00000610527.4:ENST00000618334.1:ENST00000269194.10:ENST00000592875.6:ENST00000587873.5:ENST00000333234.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.32678	2.385625	2.44447	0.0364669	0.0193538	0.145024	0.0943643
chr4	169707166	169707266	5218059	0	+	0.38	(0.36,0.39]	chr4	420923	4	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.32678	2.385625	2.44447	0.0364669	0.0193538	0.145024	0.0943643
chr9	128695532	128695628	10480935	0	+	0.375	(0.36,0.39]	chr9	790686	10	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.32678	2.385625	2.44447	0.0364669	0.0193538	0.145024	0.0943643
chr18	59329407	59329506	17142327	0	-	0.292929	(0.29,0.33]	chr18	1407602	17	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	16	69	2	1.89656	2.38553	2.8745	0.00981789	5.6114e-6	0.06149	1.70548e-4
chr1	114719578	114719660	1239614	0	-	0.52439	(0.49,0.53]	chr1	121355	1	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	7	40	2	2.30147	2.3855250000000003	2.46958	0.00344146	0.0033367	0.0292838	0.0278556
chr6	31835101	31835200	7116759	0	+	0.575758	(0.53,0.59]	chr6	546213	6	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5	lncRNA	lncRNA	lncRNA	lncRNA	30	191	2	2.06021	2.38539	2.71057	4.85022e-4	3.13218e-6	0.00681567	1.04757e-4
chr11	67585137	67585189	11996978	0	+	0.596154	(0.59,1]	chr11	923169	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000498765.5:ENST00000467591.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	150	2	2.37467	2.38538	2.39609	0.00154869	3.85069e-4	0.0164839	0.00531612
chr5	146143411	146143480	6891356	0	-	0.536232	(0.53,0.59]	chr5	527520	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	54	2	2.0042	2.385335	2.76647	0.0113999	2.92577e-4	0.0668496	0.00464297
chr11	66059857	66059933	11987451	0	+	0.565789	(0.53,0.59]	chr11	921323	2	CDS	CDS:EXON_MRNA	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000529994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	30	2	1.90953	2.385275	2.86102	0.0517711	0.0017805	0.193577	0.0172974
chr16	88738297	88738368	16074682	0	-	0.676056	(0.59,1]	chr16	1291760	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	3	37	2	2.32455	2.38521	2.44587	0.0520547	0.0105307	0.193787	0.0644466
chr3	195786532	195786632	4661132	0	-	0.62	(0.59,1]	chr3	385270	79	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	37	2	2.32455	2.38521	2.44587	0.0520547	0.0105307	0.193787	0.0644466
chr7	100099278	100099358	8949695	0	-	0.6	(0.59,1]	chr7	683553	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5:ENST00000467516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	49	2	1.96394	2.385155	2.80637	0.0453144	0.00274489	0.174798	0.0238522
chr8	23528955	23529002	9230278	0	+	0.787234	(0.59,1]	chr8	706524	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000519192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	82	2	2.06696	2.3851199999999997	2.70328	0.0170848	6.00007e-4	0.0897702	0.00750723
chr13	113641287	113641380	13909856	0	+	0.311828	(0.29,0.33]	chr13	1090561	12	UTR3	UTR3:EXON_MRNA	TFDP1	ENSG00000198176.13	ENST00000375370.10	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.99415	2.3850000000000002	2.77585	0.0333928	0.0143131	0.140128	0.0780602
chr2	20250286	20250386	2540640	0	-	0.3	(0.29,0.33]	chr2	228490	17	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000440577.5	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.99415	2.3850000000000002	2.77585	0.0333928	0.0143131	0.140128	0.0780602
chr6	36969852	36969952	7683209	0	-	0.3	(0.29,0.33]	chr6	589205	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MTCH1	ENSG00000137409.20	ENST00000373616.9:ENST00000373627.10:ENST00000471737.1:ENST00000418541.6:ENST00000460219.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	15	2	1.99415	2.3850000000000002	2.77585	0.0333928	0.0143131	0.140128	0.0780602
chr8	43124359	43124458	9308517	0	+	0.292929	(0.29,0.33]	chr8	712880	16	UTR3	UTR3:EXON_MRNA:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000674937.1:ENST00000674676.1:ENST00000675675.1:ENST00000675322.1:ENST00000674646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	1.99415	2.3850000000000002	2.77585	0.0333928	0.0143131	0.140128	0.0780602
chr14	92162536	92162635	14458446	0	+	0.323232	(0.29,0.33]	chr14	1128971	9	UTR3	UTR3:EXON_MRNA	CPSF2	ENSG00000165934.13	ENST00000298875.9	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	1.99403	2.3849400000000003	2.77585	0.0202925	0.0143131	0.098158	0.0780602
chr15	44379689	44379788	14898234	0	+	0.444444	(0.42,0.455]	chr15	1171514	1	CDS	CDS:EXON_MRNA	GOLM2	ENSG00000166734.20	ENST00000299957.11:ENST00000650436.1:ENST00000345795.6:ENST00000558847.1	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	2.2473	2.38492	2.52254	0.0048106	5.58298e-4	0.0371037	0.00709272
chr17	39254561	39254661	16534303	0	-	0.45	(0.42,0.455]	chr17	1353914	20	UTR3	UTR3:EXON_MRNA	FBXL20	ENSG00000108306.13	ENST00000264658.11	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.22933	2.38488	2.54043	0.0102262	0.00705852	0.062872	0.047732
chr15	41301337	41301437	14885434	0	+	0.38	(0.36,0.39]	chr15	1169280	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	15	2	2.1437	2.3846749999999997	2.62565	0.0340515	0.0219469	0.141465	0.103959
chr2	171481901	171482000	2207021	0	+	0.373737	(0.36,0.39]	chr2	201956	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DCAF17	ENSG00000115827.14	ENST00000468592.5:ENST00000375255.8:ENST00000539783.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	15	2	2.1437	2.3846749999999997	2.62565	0.0340515	0.0219469	0.141465	0.103959
chr4	48422175	48422273	4826821	0	+	0.377551	(0.36,0.39]	chr4	397749	2	UTR3	UTR3:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	2.1437	2.3846749999999997	2.62565	0.0340515	0.0219469	0.141465	0.103959
chr3	98585440	98585513	4319595	0	-	0.547945	(0.53,0.59]	chr3	360265	1	CDS	CDS:EXON_MRNA	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2:ENST00000510489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	46	2	2.08502	2.38467	2.68432	0.00828532	0.00118971	0.0543012	0.0128045
chr17	75168043	75168141	16682495	0	-	0.357143	(0.33,0.36]	chr17	1372978	26	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7:ENST00000314523.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	77	2	1.81451	2.384615	2.95472	0.0120734	2.85153e-6	0.0695634	9.65121e-5
chr11	1995451	1995543	12230702	0	-	0.434783	(0.42,0.455]	chr11	944462	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	H19	ENSG00000130600.19	ENST00000414790.6:ENST00000412788.5:ENST00000439725.5:ENST00000411861.5:ENST00000417089.6:ENST00000431095.7:ENST00000442037.5:ENST00000428066.6:ENST00000436715.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	24	2	2.36247	2.3845549999999998	2.40664	0.0462889	0.00445101	0.176878	0.0340751
chr19	29207732	29207817	17528317	0	-	0.447059	(0.42,0.455]	chr19	1471070	2	CDS	CDS:EXON_MRNA	UQCRFS1	ENSG00000169021.6	ENST00000304863.6	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.36247	2.3845549999999998	2.40664	0.0462889	0.00445101	0.176878	0.0340751
chr5	154818779	154818875	6929599	0	-	0.427083	(0.42,0.455]	chr5	530568	4	UTR3	UTR3:EXON_MRNA	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	2.36247	2.3845549999999998	2.40664	0.0462889	0.00445101	0.176878	0.0340751
chr2	38748046	38748101	2605180	0	-	0.418182	(0.39,0.42]	chr2	234683	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000452806.5:ENST00000409276.5:ENST00000432873.5:ENST00000431066.5:ENST00000443213.5:ENST00000487773.1:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	2.01081	2.384535	2.75826	0.0207537	0.00103132	0.100574	0.0121443
chr10	68791358	68791451	11091911	0	+	0.258065	[0,0.29]	chr10	843085	2	UTR3	UTR3:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000265872.11	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	2.16074	2.38429	2.60784	0.0222978	0.00209281	0.105845	0.0196502
chr16	4803589	4803686	15838344	0	-	0.463918	(0.455,0.49]	chr16	1264802	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000587936.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	1.92777	2.38428	2.84079	0.0286531	0.00201021	0.128685	0.0190112
chr8	140524051	140524150	10132083	0	-	0.474747	(0.455,0.49]	chr8	760954	40	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	1.92777	2.38428	2.84079	0.0286531	0.00201021	0.128685	0.0190112
chr5	10261559	10261652	5874635	0	+	0.580645	(0.53,0.59]	chr5	461881	1	CDS	CDS:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000423695.6:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	66	2	2.03947	2.38422	2.72897	0.00610305	1.64347e-4	0.0439421	0.00269001
chr19	40605569	40605652	17330258	0	+	0.674699	(0.59,1]	chr19	1435950	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	LTBP4	ENSG00000090006.18	ENST00000204005.13:ENST00000599016.5:ENST00000308370.11:ENST00000598717.5:ENST00000396819.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	66	2	1.63662	2.38401	3.1314	0.0410169	6.69043e-4	0.163285	0.00820018
chr1	11054772	11054864	859075	0	-	0.76087	(0.59,1]	chr1	86758	3	UTR3	UTR3:EXON_MRNA	SRM	ENSG00000116649.10	ENST00000475189.1:ENST00000376957.7:ENST00000490101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	66	2	2.1563	2.3838999999999997	2.6115	0.00708052	0.00584247	0.0478776	0.0422426
chr1	207049550	207049636	1465450	0	-	0.488372	(0.455,0.49]	chr1	148276	6	CDS	CDS:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.30139	2.3838150000000002	2.46624	0.0530131	0.0094145	0.195536	0.0592633
chr3	9470646	9470740	3298309	0	+	0.478723	(0.455,0.49]	chr3	289589	3	CDS	CDS:UTR3:EXON_MRNA	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000486465.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.30139	2.3838150000000002	2.46624	0.0530131	0.0094145	0.195536	0.0592633
chrX	47652080	47652144	19061078	0	-	0.484375	(0.455,0.49]	chrX	1620027	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	UXT	ENSG00000126756.12	ENST00000335890.3:ENST00000333119.7:ENST00000485641.5:ENST00000460840.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	2.30139	2.3838150000000002	2.46624	0.0530131	0.0094145	0.195536	0.0592633
chr8	69690338	69690438	9876379	0	-	0.43	(0.42,0.455]	chr8	746644	76	INTRON	INTRON	SLCO5A1	ENSG00000137571.11	ENST00000260126.9:ENST00000524945.5:ENST00000526750.1:ENST00000530307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	311	1475	2	2.24218	2.3833349999999998	2.52449	1.92137e-6	2.15483e-7	7.61956e-5	1.08123e-5
chr17	75167846	75167944	16682493	0	-	0.27551	[0,0.29]	chr17	1372978	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7:ENST00000314523.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	39	125	2	2.04652	2.38327	2.72002	3.12553e-4	2.06102e-6	0.00482619	7.34852e-5
chr11	62571610	62571682	12409133	0	-	0.611111	(0.59,1]	chr11	960967	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000524420.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	212	2	2.36202	2.383215	2.40441	4.81647e-4	2.18117e-4	0.00677097	0.00337385
chr14	101766554	101766653	14493256	0	+	0.353535	(0.33,0.36]	chr14	1132783	14	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000557268.5:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	29	2	2.22102	2.3832000000000004	2.54538	0.00736622	0.00259294	0.0490627	0.0229695
chr19	11132093	11132189	17230312	0	+	0.458333	(0.455,0.49]	chr19	1419642	7	UTR3	UTR3:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	37	2	2.07467	2.38318	2.69169	0.00905778	0.00126948	0.0574177	0.0139061
chr7	50401322	50401422	8279144	0	+	0.62	(0.59,1]	chr7	630737	8	UTR3	UTR3:EXON_MRNA	IKZF1	ENSG00000185811.19	ENST00000331340.8:ENST00000349824.8:ENST00000343574.9:ENST00000357364.8:ENST00000440768.6:ENST00000346667.8:ENST00000615491.4:ENST00000359197.9:ENST00000439701.2	protein_coding	protein_coding	protein_coding	protein_coding	3	38	2	2.28778	2.383075	2.47837	0.0556537	0.00970721	0.191528	0.0608296
chr7	44827480	44827578	8800294	0	-	0.459184	(0.455,0.49]	chr7	671362	8	UTR3	UTR3:EXON_MRNA	H2AZ2	ENSG00000105968.19	ENST00000222690.10	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.92777	2.382845	2.83792	0.0286531	0.0110512	0.128685	0.0665375
chr9	128694856	128694953	10480928	0	+	0.43299	(0.42,0.455]	chr9	790686	3	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13:ENST00000372686.5	protein_coding	protein_coding	protein_coding	protein_coding	26	126	2	2.2649	2.38272	2.50054	1.21088e-4	3.48607e-5	0.00230012	7.655e-4
chr19	16647133	16647232	17492564	0	-	0.474747	(0.455,0.49]	chr19	1466610	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CTC-429P9.4:SMIM7	ENSG00000268790.5:ENSG00000214046.9	ENST00000593962.5:ENST00000601636.5:ENST00000595505.5:ENST00000593991.5:ENST00000593459.5:ENST00000594509.5:ENST00000600705.1:ENST00000465250.6:ENST00000481671.6:ENST00000594662.5:ENST00000597781.5:ENST00000598278.5:ENST00000593409.5:ENST00000487803.5:ENST00000627144.2:ENST00000487416.7:ENST00000593404.5:ENST00000597711.5:ENST00000599310.5:ENST00000397349.6:ENST00000602194.5:ENST00000600740.5:ENST00000463051.5:ENST00000461488.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	2.07467	2.3826	2.69053	0.0182983	0.00905778	0.0925808	0.0574177
chr16	172912	173007	15480727	0	+	0.663158	(0.59,1]	chr16	1224192	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HBA2	ENSG00000188536.13	ENST00000251595.11:ENST00000397806.1:ENST00000482565.1:ENST00000484216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	100	1062	2	1.64006	2.3824899999999998	3.12492	0.00179571	2.1291e-7	0.0174229	1.20127e-5
chr5	139307875	139307966	6248866	0	+	0.472527	(0.455,0.49]	chr5	486959	5	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	70	2	1.98888	2.382485	2.77609	0.00127995	2.98403e-4	0.0135903	0.00471684
chr2	69938581	69938680	1878431	0	+	0.484848	(0.455,0.49]	chr2	177393	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	1.96875	2.38245	2.79615	0.0480352	2.49149e-4	0.180552	0.00376163
chr3	184307889	184307952	3949094	0	+	0.619048	(0.59,1]	chr3	332355	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000310118.9:ENST00000439383.5:ENST00000435761.5:ENST00000432855.1:ENST00000473991.1:ENST00000491494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	43	2	1.99004	2.38211	2.77418	0.0214639	0.0160729	0.102904	0.0860154
chr8	100703275	100703359	9975934	0	-	0.297619	(0.29,0.33]	chr8	752645	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PABPC1:MIR7705	ENSG00000070756.17:ENSG00000284570.1	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000614758.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5:ENST00000517990.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	152	610	2	1.57114	2.38209	3.19304	9.82669e-4	2.23445e-10	0.0116947	2.78017e-8
chr2	15629601	15629697	1650995	0	+	0.458333	(0.455,0.49]	chr2	162977	1	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	2.35716	2.3819	2.40664	0.0123662	0.00260884	0.0705839	0.0230635
chr2	110658464	110658520	2838131	0	-	0.357143	(0.33,0.36]	chr2	253340	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	38	2	2.3136	2.38173	2.44986	0.00563343	0.00110072	0.0422191	0.0119958
chr18	59328912	59329011	17142322	0	-	0.292929	(0.29,0.33]	chr18	1407602	12	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	18	68	2	2.32825	2.381705	2.43516	0.00115302	7.64185e-5	0.0130851	0.00145498
chrX	48267148	48267247	18691159	0	+	0.424242	(0.42,0.455]	chrX	1593888	4	UTR3	UTR3:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	9	46	2	1.97151	2.381665	2.79182	0.0084649	2.81794e-4	0.0546473	0.00451339
chr9	131189062	131189131	10496271	0	+	0.478261	(0.455,0.49]	chr9	793327	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.5:ENST00000453861.6:ENST00000470765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	101	2	2.07268	2.38157	2.69046	5.31025e-4	3.60524e-5	0.00740433	7.88197e-4
chr5	113017047	113017146	6153929	0	+	0.393939	(0.39,0.42]	chr5	480731	37	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	10	52	2	2.13033	2.38154	2.63275	0.00865856	1.55045e-4	0.0557159	0.00258327
chr19	34433347	34433412	17300904	0	+	0.353846	(0.33,0.36]	chr19	1429970	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	UBA2	ENSG00000126261.13	ENST00000607361.5:ENST00000586313.1:ENST00000590048.6:ENST00000246548.9:ENST00000439527.6:ENST00000592672.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	1.82394	2.3813899999999997	2.93884	0.0494504	0.00135211	0.18557	0.0140654
chr1	32333238	32333335	128531	0	+	0.43299	(0.42,0.455]	chr1	15954	3	UTR3	UTR3:EXON_MRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000476391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	27	2	2.19225	2.38138	2.57051	0.0265466	0.00548036	0.120071	0.0402071
chr7	92123793	92123853	8922207	0	-	0.45	(0.42,0.455]	chr7	680653	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	2.19225	2.38138	2.57051	0.0265466	0.00548036	0.120071	0.0402071
chr19	48965769	48965842	17368087	0	+	0.575342	(0.53,0.59]	chr19	1442242	1	CDS	CDS:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	58	342	2	2.26246	2.3813649999999997	2.50027	1.53358e-5	8.83171e-6	3.91711e-4	2.72926e-4
chr17	1656391	1656478	16401328	0	-	0.482759	(0.455,0.49]	chr17	1334852	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5	protein_coding	protein_coding	protein_coding	protein_coding	9	47	2	2.35761	2.381345	2.40508	0.0022198	0.00138275	0.0211918	0.0143168
chr3	149031820	149031920	4509075	0	-	0.33	(0.29,0.33]	chr3	374148	18	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.83055	2.381225	2.9319	0.0348758	0.00145571	0.144642	0.0148357
chr21	8209898	8209997	18041116	0	+	0.666667	(0.59,1]	chr21	1530812	6	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	3327	34315	2	2.27861	2.38122	2.48383	1.64864e-5	5.44904e-6	4.17282e-4	1.81762e-4
chr11	119301555	119301653	12163764	0	+	0.428571	(0.42,0.455]	chr11	938080	19	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000634840.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.03532	2.38109	2.72686	0.040947	0.00330337	0.163285	0.027613
chr19	34194559	34194641	17298734	0	+	0.451219	(0.42,0.455]	chr19	1429653	2	CDS	CDS:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000589878.5:ENST00000540746.6:ENST00000433627.9:ENST00000586157.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	2.03532	2.38109	2.72686	0.040947	0.00330337	0.163285	0.027613
chr3	179581139	179581220	3928631	0	+	0.432099	(0.42,0.455]	chr3	330200	1	CDS	CDS:EXON_MRNA	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000429709.7:ENST00000484312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	2.03532	2.38109	2.72686	0.040947	0.00330337	0.163285	0.027613
chr2	20318536	20318590	2541345	0	-	0.481481	(0.455,0.49]	chr2	228593	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7:ENST00000442400.5:ENST00000420234.5:ENST00000429419.6:ENST00000432105.5:ENST00000446940.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	23	2	2.23479	2.381065	2.52734	0.0209335	0.00792433	0.101282	0.0523592
chr3	177024008	177024107	4593467	0	-	0.242424	[0,0.29]	chr3	379622	48	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	31	2	2.35803	2.3809899999999997	2.40395	0.0210081	9.33535e-4	0.101116	0.0105624
chr2	164573818	164573897	2172255	0	+	0.367089	(0.36,0.39]	chr2	199802	2	EXON_PSEUDO	EXON_PSEUDO	RP11-452N17.1	ENSG00000277998.1	ENST00000613695.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	5	26	2	2.1437	2.3809	2.6181	0.0340515	0.00176908	0.141465	0.0172426
chr3	47681304	47681402	4162716	0	-	0.265306	[0,0.29]	chr3	348397	4	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000462198.5:ENST00000485737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	12	2	1.93716	2.380795	2.82443	0.0548436	0.0180803	0.189511	0.0920398
chr3	13317294	13317390	4046194	0	-	0.385417	(0.36,0.39]	chr3	339510	12	UTR3	UTR3:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	9	38	2	1.93673	2.380745	2.82476	0.00693194	8.21459e-4	0.0473262	0.0102028
chr10	70230340	70230399	11560897	0	-	0.271186	[0,0.29]	chr10	879675	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000373230.7:ENST00000625364.1:ENST00000460755.1:ENST00000495346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	25	2	2.25155	2.3806700000000003	2.50979	0.00608277	0.00495706	0.0438976	0.0368301
chr1	32334406	32334501	922174	0	-	0.589474	(0.53,0.59]	chr1	97099	7	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	10	63	2	2.2203	2.38056	2.54082	0.0016462	0.00100675	0.0163443	0.011962800000000001
chr12	54281443	54281502	12891428	0	+	0.542373	(0.53,0.59]	chr12	1002911	2	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000679101.1:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000678690.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	23	141	2	2.35668	2.38013	2.40358	1.03872e-4	9.77349e-5	0.00201993	0.00177105
chr3	128650700	128650800	4441625	0	-	0.7	(0.59,1]	chr3	369052	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5:ENST00000495462.5:ENST00000476931.1:ENST00000497415.1:ENST00000481168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	59	2	1.74555	2.379935	3.01432	0.0444308	0.00121259	0.165174	0.0135383
chr17	32365329	32365408	16200596	0	+	0.518987	(0.49,0.53]	chr17	1308175	1	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5:ENST00000579416.1:ENST00000582705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	94	2	1.7452	2.379865	3.01453	0.00573905	5.63292e-6	0.0426551	1.71069e-4
chr12	64435626	64435674	12921994	0	+	0.416667	(0.39,0.42]	chr12	1007100	1	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.2627100000000002	2.37986	2.49701	0.0339607	0.0192666	0.141431	0.0966228
chr17	59938737	59938837	16297496	0	+	0.41	(0.39,0.42]	chr17	1321956	18	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	2.2627100000000002	2.37986	2.49701	0.0339607	0.0192666	0.141431	0.0966228
chr19	15236799	15236897	17484898	0	-	0.397959	(0.39,0.42]	chr19	1465289	14	UTR3	UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.2627100000000002	2.37986	2.49701	0.0339607	0.0192666	0.141431	0.0966228
chrX	120525064	120525164	19196658	0	-	0.4	(0.39,0.42]	chrX	1632024	193	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000679965.1:ENST00000681263.1:ENST00000681706.1:ENST00000681908.1:ENST00000681652.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.2627100000000002	2.37986	2.49701	0.0339607	0.0192666	0.141431	0.0966228
chr12	104349512	104349612	13059149	0	+	0.34	(0.33,0.36]	chr12	1017716	12	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.00765	2.379785	2.75192	0.0287001	0.00318114	0.128757	0.0267094
chrX	111705730	111705830	18825941	0	+	0.4	(0.39,0.42]	chrX	1604174	157	INTRON	INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000394780.8:ENST00000610588.4:ENST00000251943.8:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000470704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.37759	2.379725	2.38186	0.0428865	0.00601449	0.161091	0.0434483
chr1	32330631	32330686	128499	0	+	0.472727	(0.455,0.49]	chr1	15935	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5:ENST00000484305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	18	2	2.35214	2.37939	2.40664	0.0455621	0.0123662	0.168044	0.0705839
chr20	49084025	49084093	17811738	0	+	0.352941	(0.33,0.36]	chr20	1506546	1	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.22102	2.37907	2.53712	0.00766322	0.00736622	0.0503696	0.0490627
chr11	47469216	47469315	12386800	0	-	0.515152	(0.49,0.53]	chr11	956932	34	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6:ENST00000361904.7	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.9676	2.37861	2.78962	0.0129044	0.00876974	0.0725185	0.056115
chr6	158583953	158584044	7521601	0	+	0.362637	(0.36,0.39]	chr6	573942	1	CDS	CDS:EXON_MRNA	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	2.336	2.37857	2.42114	0.0154226	0.00564641	0.0834369	0.0422191
chr10	3118781	3118869	10903699	0	+	0.579545	(0.53,0.59]	chr10	829755	1	CDS	CDS:UTR3:EXON_MRNA	PFKP	ENSG00000067057.18	ENST00000381125.9:ENST00000381075.7:ENST00000678206.1:ENST00000678089.1:ENST00000676796.1:ENST00000415005.6:ENST00000413079.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	1.96733	2.378565	2.7898	0.022694	0.0128364	0.105117	0.0719798
chr5	146455205	146455281	6281005	0	+	0.565789	(0.53,0.59]	chr5	489519	3	CDS	CDS:EXON_MRNA	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	1.96733	2.378565	2.7898	0.022694	0.0128364	0.105117	0.0719798
chr16	46659977	46660076	15927113	0	-	0.353535	(0.33,0.36]	chr16	1277396	40	UTR3	UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	29	2	2.10798	2.3782449999999997	2.64851	0.00492353	0.00458903	0.0366648	0.0355575
chr17	32370250	32370349	16200653	0	+	0.353535	(0.33,0.36]	chr17	1308199	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	18	2	2.28465	2.37814	2.47163	0.0188404	0.0129725	0.0958835	0.0724783
chr5	93682637	93682737	6701882	0	-	0.38	(0.36,0.39]	chr5	516398	612	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	41	2	2.00093	2.3777	2.75447	0.00996106	3.28568e-4	0.0621728	0.00467693
chr11	85990324	85990399	12526047	0	-	0.4	(0.39,0.42]	chr11	972204	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1	protein_coding	protein_coding	protein_coding	protein_coding	8	44	2	1.79377	2.37754	2.96131	0.0299302	9.04431e-5	0.129773	0.00167558
chr5	93683205	93683298	6701888	0	-	0.462366	(0.455,0.49]	chr5	516399	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	FAM172A:NPM1P27	ENSG00000113391.19:ENSG00000249353.2	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000502784.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	12	61	2	1.98867	2.377415	2.76616	0.00395226	1.29557e-4	0.0322851	0.00223885
chr3	160436288	160436387	4552528	0	-	0.444444	(0.42,0.455]	chr3	376920	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RP11-432B6.3:TRIM59	ENSG00000248710.1:ENSG00000213186.8	ENST00000483754.1:ENST00000543469.1:ENST00000309784.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.84101	2.37737	2.91373	0.0352234	0.00892357	0.142054	0.0567495
chr1	29117796	29117894	121627	0	+	0.44898	(0.42,0.455]	chr1	14751	11	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	72	2	2.08823	2.377205	2.66618	9.0548e-4	2.64991e-4	0.0102981	0.004287
chr8	124543131	124543205	9593470	0	+	0.5	(0.49,0.53]	chr8	727758	1	CDS	CDS:UTR3:EXON_MRNA	NDUFB9	ENSG00000147684.10	ENST00000606244.2:ENST00000677021.1:ENST00000276689.8:ENST00000677822.1:ENST00000518008.5:ENST00000522532.6:ENST00000517367.1:ENST00000524241.2:ENST00000677782.1:ENST00000676713.1:ENST00000677950.1:ENST00000518657.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	40	2	1.93897	2.376945	2.81492	0.0151118	6.31846e-4	0.0820541	0.00837621
chr18	8916887	8916984	16750727	0	+	0.515464	(0.49,0.53]	chr18	1381318	2	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	15	81	2	2.2619	2.376695	2.49149	8.70114e-4	1.42205e-4	0.0101169	0.00260826
chr1	29117404	29117502	121623	0	+	0.459184	(0.455,0.49]	chr1	14751	7	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	91	2	2.09777	2.37669	2.65561	0.0022782	2.03623e-5	0.0216337	4.9502e-4
chr12	120176142	120176217	13579529	0	-	0.52	(0.49,0.53]	chr12	1068752	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000548821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	2.03065	2.376585	2.72252	0.0189484	0.0161474	0.0958835	0.0860154
chr16	51646680	51646780	15663192	0	+	0.52	(0.49,0.53]	chr16	1244825	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000565308.2:ENST00000562726.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	2.03065	2.376585	2.72252	0.0189484	0.0161474	0.0958835	0.0860154
chr7	139079863	139079958	9102392	0	-	0.494737	(0.49,0.53]	chr7	694570	9	CDS	CDS:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.03065	2.376585	2.72252	0.0189484	0.0161474	0.0958835	0.0860154
chr19	11450698	11450788	17231283	0	+	0.711111	(0.59,1]	chr19	1419944	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000591510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	116	2	2.18771	2.37646	2.56521	0.00177174	0.00125196	0.0172666	0.0138105
chr2	28799794	28799892	1702896	0	+	0.265306	[0,0.29]	chr2	167042	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	50	2	2.32541	2.376265	2.42712	8.1794e-4	4.63899e-4	0.0101664	0.00614893
chr4	99948461	99948523	5551582	0	-	0.419355	(0.39,0.42]	chr4	443718	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	52	2	2.26834	2.375955	2.48357	0.00171404	8.525e-4	0.017714	0.00994988
chr7	56058619	56058702	8290493	0	+	0.433735	(0.42,0.455]	chr7	631485	1	CDS	CDS:EXON_MRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000482776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	1.69266	2.375775	3.05889	0.0354788	0.00524205	0.143019	0.0399155
chr21	29326439	29326534	18089877	0	+	0.421053	(0.42,0.455]	chr21	1533699	5	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000451655.5:ENST00000447177.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.19674	2.37574	2.55474	0.0254904	0.00228741	0.117089	0.0210026
chr16	89563042	89563142	15810107	0	+	0.6	(0.59,1]	chr16	1258685	1	UTR3	UTR3:EXON_MRNA	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	48	2	2.03921	2.375715	2.71222	0.0371471	0.00398753	0.151849	0.031888
chr2	222613869	222613928	3196820	0	-	0.525424	(0.49,0.53]	chr2	281672	2	CDS	CDS:EXON_MRNA	FARSB	ENSG00000116120.11	ENST00000281828.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.26641	2.375645	2.48488	0.032052	0.0190546	0.133433	0.093872
chr20	37530458	37530543	17778964	0	+	0.517647	(0.49,0.53]	chr20	1502240	6	EXON_PSEUDO	EXON_PSEUDO	PPIAP3	ENSG00000235044.1	ENST00000450588.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	19	2	2.26641	2.375645	2.48488	0.032052	0.0190546	0.133433	0.093872
chr7	143264085	143264167	8580779	0	+	0.5	(0.49,0.53]	chr7	655581	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSTK1	ENSG00000197448.14	ENST00000436038.5:ENST00000409500.7:ENST00000358406.10:ENST00000443571.6:ENST00000442394.5:ENST00000479303.1:ENST00000494735.1:ENST00000473649.1:ENST00000489654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	2.26641	2.375645	2.48488	0.032052	0.0190546	0.133433	0.093872
chr20	58905382	58905480	17841191	0	+	0.540816	(0.53,0.59]	chr20	1508823	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000683015.1:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000487862.5:ENST00000496934.5:ENST00000683632.1:ENST00000684644.1:ENST00000684761.1:ENST00000682590.1:ENST00000684466.1:ENST00000682092.1:ENST00000682986.1:ENST00000475610.2:ENST00000682411.1:ENST00000683932.1:ENST00000682917.1:ENST00000682680.1:ENST00000476196.5:ENST00000494081.5:ENST00000487981.5:ENST00000493958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	63	2	2.0693	2.3752750000000002	2.68125	0.0160468	1.14991e-4	0.0860154	0.00203853
chr5	139314674	139314734	6248936	0	+	0.466667	(0.455,0.49]	chr5	486964	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000514402.1:ENST00000505625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	60	2	2.10658	2.37522	2.64386	0.00204602	2.93041e-4	0.0193107	0.00464297
chr3	22382042	22382141	3353707	0	+	0.484848	(0.455,0.49]	chr3	294010	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	HMGB1P5	ENSG00000132967.9	ENST00000255320.6:ENST00000451497.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	8	44	2	2.0008	2.374425	2.74805	0.0129467	3.3051e-4	0.0724783	0.00470169
chr5	168551486	168551585	6968932	0	-	0.272727	[0,0.29]	chr5	532791	31	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	1.67519	2.374345	3.0735	0.0299989	0.00785095	0.130016	0.0520241
chr17	1679703	1679799	16401604	0	-	0.510417	(0.49,0.53]	chr17	1334959	2	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1	protein_coding	protein_coding	protein_coding	protein_coding	10	60	2	1.81941	2.3742900000000002	2.92917	0.0158768	4.42985e-5	0.0854674	9.29789e-4
chr17	76270193	76270263	16358523	0	+	0.642857	(0.59,1]	chr17	1328416	1	CDS	CDS:EXON_MRNA	UBALD2	ENSG00000185262.9	ENST00000327490.8:ENST00000587913.1:ENST00000589240.1	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.32455	2.37418	2.42381	0.0520547	0.00452614	0.193787	0.0346018
chr1	22091517	22091616	93079	0	+	0.353535	(0.33,0.36]	chr1	10799	1	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding	17	72	2	1.88536	2.374035	2.86271	0.00519113	1.00194e-5	0.0396971	2.77162e-4
chr21	8210690	8210789	18041124	0	+	0.606061	(0.59,1]	chr21	1530812	14	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	11164	116367	2	2.16082	2.3737950000000003	2.58677	3.63778e-5	2.55328e-6	7.94763e-4	9.70716e-5
chr1	44651154	44651249	173229	0	+	0.4	(0.39,0.42]	chr1	22214	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6:ENST00000474064.5:ENST00000484745.5:ENST00000480686.5:ENST00000474956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	1.99911	2.3737	2.74829	0.0477207	8.96426e-4	0.17993	0.0102618
chr1	151051952	151052050	1291624	0	-	0.428571	(0.42,0.455]	chr1	128778	11	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.84101	2.373585	2.90616	0.0352234	0.00162359	0.142054	0.0169915
chr3	11809516	11809599	4039935	0	-	0.481928	(0.455,0.49]	chr3	339024	1	CDS	CDS:UTR3:EXON_MRNA	TAMM41	ENSG00000144559.10	ENST00000273037.9:ENST00000455809.5:ENST00000498127.5:ENST00000457498.5:ENST00000486090.1:ENST00000414736.1:ENST00000444133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.75044	2.37357	2.9967	0.0463133	0.00650423	0.170072	0.0454205
chr8	23573025	23573122	9230729	0	+	0.474227	(0.455,0.49]	chr8	706561	13	UTR3	UTR3:EXON_MRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.75044	2.37357	2.9967	0.0463133	0.00650423	0.170072	0.0454205
chr6	32180512	32180606	7118668	0	+	0.468085	(0.455,0.49]	chr6	547014	3	UTR3	UTR3:EXON_MRNA	RNF5	ENSG00000204308.8	ENST00000375094.4	protein_coding	protein_coding	protein_coding	protein_coding	8	41	2	2.13079	2.3731850000000003	2.61558	0.00422749	0.00184897	0.0329189	0.0185736
chr9	4860175	4860275	10166152	0	+	0.48	(0.455,0.49]	chr9	765574	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	1.90433	2.3731750000000003	2.84202	0.0185466	5.41187e-4	0.0932453	0.00689416
chr6	33276390	33276466	7121557	0	+	0.618421	(0.59,1]	chr6	547511	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5:ENST00000472218.1:ENST00000479802.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	35	367	2	2.3649	2.373095	2.38129	1.15595e-4	9.69298e-5	0.00220519	0.00175682
chr14	76886656	76886750	14714357	0	-	0.446809	(0.42,0.455]	chr14	1152840	4	EXON_PSEUDO	EXON_PSEUDO	RPL22P2	ENSG00000241081.1	ENST00000469811.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	57	2	2.06065	2.37305	2.68545	0.0013812	0.00135767	0.0146849	0.014307
chr12	4304858	4304957	12704492	0	+	0.434343	(0.42,0.455]	chr12	985544	50	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	27	2	2.15137	2.372995	2.59462	0.0123864	0.0062772	0.07101	0.0445415
chr6	27133171	27133267	7104126	0	+	0.677083	(0.59,1]	chr6	543283	1	CDS	CDS:EXON_MRNA	H2AC11	ENSG00000196787.3	ENST00000359193.3	protein_coding	protein_coding	protein_coding	protein_coding	28	298	2	2.32629	2.3729750000000003	2.41966	2.6776e-4	1.02529e-4	0.0039954	0.00199587
chr21	33909146	33909211	18224321	0	-	0.430769	(0.42,0.455]	chr21	1546663	2	CDS	CDS:EXON_MRNA:INTRON	AP000304.12:ATP5PO	ENSG00000249209.2:ENSG00000241837.7	ENST00000429238.2:ENST00000290299.7:ENST00000491703.5:ENST00000431254.5:ENST00000652380.1:ENST00000495005.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	41	2	1.87571	2.37267	2.86963	0.0138685	4.62477e-4	0.0760883	0.00613242
chr7	130506412	130506499	9064222	0	-	0.321839	(0.29,0.33]	chr7	692357	3	UTR3	UTR3:EXON_MRNA	COPG2	ENSG00000158623.14	ENST00000425248.5	protein_coding	protein_coding	protein_coding	protein_coding	12	42	2	1.81695	2.372545	2.92814	0.0105563	1.23255e-4	0.0637867	0.00214023
chr13	79552910	79553009	13800343	0	+	0.343434	(0.33,0.36]	chr13	1085549	5	UTR3	UTR3:EXON_MRNA	NDFIP2	ENSG00000102471.14	ENST00000612570.4:ENST00000218652.11:ENST00000650134.1:ENST00000487865.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.27335	2.37249	2.47163	0.0129725	0.00837768	0.0724783	0.0541213
chr3	49096028	49096079	4172400	0	-	0.470588	(0.455,0.49]	chr3	350320	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000497635.5:ENST00000487495.5:ENST00000494984.5:ENST00000414533.5:ENST00000634473.1:ENST00000464962.6:ENST00000634336.1:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000466179.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	2.15985	2.37232	2.58479	0.0128965	0.00200187	0.0722356	0.0189555
chr16	20780973	20781051	15582845	0	+	0.5	(0.49,0.53]	chr16	1234766	1	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1	protein_coding	protein_coding	protein_coding	protein_coding	11	66	2	1.65491	2.372265	3.08962	0.0213636	1.44383e-5	0.102709	3.72689e-4
chrX	23986943	23987040	19005957	0	-	0.329897	(0.29,0.33]	chrX	1617228	34	UTR3	UTR3:EXON_MRNA	KLHL15	ENSG00000174010.9	ENST00000328046.8	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	1.61234	2.37223	3.13212	0.0360321	0.00551048	0.145024	0.0414592
chr17	51168241	51168292	16266621	0	+	0.509804	(0.49,0.53]	chr17	1319613	1	CDS	CDS:EXON_MRNA	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000393190.4:ENST00000570801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	50	2	2.10199	2.372225	2.64246	0.00487463	5.94013e-4	0.0375573	0.00745979
chr5	179823933	179824010	6415169	0	+	0.571429	(0.53,0.59]	chr5	499313	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SQSTM1	ENSG00000161011.20	ENST00000514093.5:ENST00000422245.5:ENST00000481335.5:ENST00000464493.5:ENST00000508284.5:ENST00000389805.9:ENST00000504627.1:ENST00000453046.5:ENST00000510187.5:ENST00000360718.5:ENST00000485412.1:ENST00000466342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.36244	2.372175	2.38191	0.0131162	0.00477439	0.073569	0.0368489
chr12	56311210	56311278	13350263	0	-	0.5	(0.49,0.53]	chr12	1051099	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-977G19.10:CNPY2	ENSG00000144785.8:ENSG00000257727.6	ENST00000549318.5:ENST00000547423.5:ENST00000548360.1:ENST00000546466.5:ENST00000273308.9:ENST00000546937.5:ENST00000553191.1:ENST00000551475.5:ENST00000551286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	2.18239	2.37211	2.56183	0.0261296	0.024394	0.118976	0.111797
chr3	184172430	184172529	3948128	0	+	0.525253	(0.49,0.53]	chr3	331990	18	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.18239	2.37211	2.56183	0.0261296	0.024394	0.118976	0.111797
chr17	75846333	75846433	16685224	0	-	0.62	(0.59,1]	chr17	1373620	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5:ENST00000588373.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	78	2	1.65693	2.372	3.08707	0.0211812	8.79989e-4	0.102436	0.0107294
chr10	110898349	110898447	11253067	0	+	0.357143	(0.33,0.36]	chr10	857381	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	PDCD4:MIR4680	ENSG00000150593.18:ENSG00000284482.1	ENST00000393104.6:ENST00000280154.12:ENST00000498367.1:ENST00000580906.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	3	14	2	1.97842	2.37196	2.7655	0.0469469	0.0175892	0.171977	0.0918323
chr15	92897804	92897885	15114074	0	+	0.345679	(0.33,0.36]	chr15	1189331	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	CHASERR:RP11-437B10.1	ENSG00000272888.7:ENSG00000279765.3	ENST00000653163.1:ENST00000557682.6:ENST00000556895.5:ENST00000629685.2:ENST00000554133.5:ENST00000630790.1:ENST00000555520.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	14	2	1.97842	2.37196	2.7655	0.0469469	0.0175892	0.171977	0.0918323
chr2	43947256	43947313	2623550	0	-	0.350877	(0.33,0.36]	chr2	236206	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000681961.1:ENST00000683694.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	1.97842	2.37196	2.7655	0.0469469	0.0175892	0.171977	0.0918323
chr2	182964741	182964808	3060315	0	-	0.358209	(0.33,0.36]	chr2	271344	2	CDS	CDS:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2:ENST00000495619.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	1.97842	2.37196	2.7655	0.0469469	0.0175892	0.171977	0.0918323
chr3	33853945	33854013	3399769	0	+	0.352941	(0.33,0.36]	chr3	295743	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8:ENST00000465122.5:ENST00000495235.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	1.97842	2.37196	2.7655	0.0469469	0.0175892	0.171977	0.0918323
chr5	37288532	37288631	6539908	0	-	0.353535	(0.33,0.36]	chr5	506493	5	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	1.97842	2.37196	2.7655	0.0469469	0.0175892	0.171977	0.0918323
chr16	81711271	81711369	15772102	0	+	0.326531	(0.29,0.33]	chr16	1255597	16	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	18	62	2	1.74582	2.37193	2.99804	0.00655853	1.3028e-5	0.0454205	3.42469e-4
chr5	72194160	72194259	6027736	0	+	0.474747	(0.455,0.49]	chr5	472560	4	CDS	CDS:UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12:ENST00000513526.6:ENST00000511641.2:ENST00000504492.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.23479	2.371915	2.50904	0.0310515	0.0209335	0.131262	0.101282
chr9	35068250	35068300	10638204	0	-	0.48	(0.455,0.49]	chr9	804574	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	VCP:RP11-182N22.10	ENSG00000165280.18:ENSG00000288699.1	ENST00000679902.1:ENST00000678465.1:ENST00000677257.1:ENST00000679800.1:ENST00000678018.1:ENST00000678650.1:ENST00000448530.6:ENST00000358901.11:ENST00000679647.1:ENST00000681335.1:ENST00000417448.2:ENST00000680916.1:ENST00000679599.1:ENST00000679862.1:ENST00000681690.1:ENST00000679204.2:ENST00000676836.2:ENST00000493886.5:ENST00000480327.2:ENST00000681845.1:ENST00000680079.1:ENST00000681386.1:ENST00000679449.1:ENST00000680900.1:ENST00000679392.1:ENST00000680575.1:ENST00000680108.1:ENST00000679901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	2.23479	2.371915	2.50904	0.0310515	0.0209335	0.131262	0.101282
chr12	120199309	120199376	13579761	0	-	0.567164	(0.53,0.59]	chr12	1068815	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	96	2	2.22725	2.37177	2.51629	5.70328e-4	3.09523e-4	0.00779621	0.00446855
chr19	46719602	46719694	17595151	0	-	0.478261	(0.455,0.49]	chr19	1481276	2	UTR3	UTR3:EXON_MRNA	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000594581.5:ENST00000601869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	51	2	1.94735	2.37175	2.79615	0.00680997	2.49149e-4	0.0465162	0.00376163
chrX	55182083	55182173	19085029	0	-	0.4	(0.39,0.42]	chrX	1623834	2	UTR5	UTR5:EXON_MRNA	MTRNR2L10	ENSG00000256045.3	ENST00000545075.3	protein_coding	protein_coding	protein_coding	protein_coding	30	146	2	1.92125	2.371325	2.8214	0.00106629	1.17748e-6	0.0124098	4.58895e-5
chr1	228098212	228098312	744035	0	+	0.4	(0.39,0.42]	chr1	75099	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000478424.5:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	54	258	2	1.82663	2.371295	2.91596	5.13304e-4	8.7243e-8	0.00718457	4.97182e-6
chr12	56663531	56663626	13352200	0	-	0.326316	(0.29,0.33]	chr12	1051779	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	38	2	1.62519	2.37126	3.11733	0.0201432	6.70613e-5	0.0984041	0.00142582
chr12	54241354	54241454	13342940	0	-	0.37	(0.36,0.39]	chr12	1049602	100	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	13	55	2	2.21698	2.37122	2.52546	0.00116446	4.15364e-4	0.0126557	0.00608105
chr8	18066876	18066974	9732910	0	-	0.367347	(0.36,0.39]	chr8	736311	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000637857.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000523744.2:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	47	2	1.66035	2.37113	3.08191	0.026191	4.1566e-5	0.119224	8.8376e-4
chr8	66113331	66113419	9375210	0	+	0.590909	(0.59,1]	chr8	716186	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	AC084082.3	ENSG00000253190.4	ENST00000520930.1:ENST00000671118.1:ENST00000659894.1:ENST00000660814.1:ENST00000655427.1:ENST00000652875.1:ENST00000517961.3:ENST00000653437.1:ENST00000663048.1	lncRNA	lncRNA	lncRNA	lncRNA	52	549	2	1.56451	2.371065	3.17762	0.00404847	4.83628e-7	0.032143	2.40116e-5
chrX	63349285	63349383	19088576	0	-	0.316327	(0.29,0.33]	chrX	1624065	22	UTR3	UTR3:EXON_MRNA:INTRON	LINC01278:SPIN4	ENSG00000235437.8:ENSG00000186767.7	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1:ENST00000670248.1:ENST00000610234.5:ENST00000374884.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	17	2	2.24226	2.3708099999999996	2.49936	0.0306054	0.00917022	0.130226	0.0580029
chr19	54201132	54201184	17390391	0	+	0.653846	(0.59,1]	chr19	1447201	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1:ENST00000460761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	78	2	1.91973	2.3706050000000003	2.82148	0.0167506	7.99341e-4	0.0883702	0.00939703
chr7	75422604	75422704	8858979	0	-	0.63	(0.59,1]	chr7	676969	12	CDS	CDS:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	2.23761	2.370415	2.50322	0.00863444	0.00314845	0.0556009	0.0277515
chr17	2417616	2417714	16406459	0	-	0.418367	(0.39,0.42]	chr17	1335472	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000574623.1:ENST00000571669.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.18155	2.3699950000000003	2.55844	0.0283931	0.0263695	0.127654	0.117164
chr4	83470294	83470386	5500302	0	-	0.413043	(0.39,0.42]	chr4	440801	2	CDS	CDS:UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6:ENST00000506553.5:ENST00000611288.4:ENST00000505489.5:ENST00000511801.1:ENST00000503217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.18155	2.3699950000000003	2.55844	0.0283931	0.0263695	0.127654	0.117164
chr12	98535335	98535435	13036731	0	+	0.32	(0.29,0.33]	chr12	1014956	11	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	2.28605	2.36989	2.45373	0.0156405	0.00224889	0.084273700000000007	0.0207945
chr2	197421028	197421128	3106615	0	-	0.44	(0.42,0.455]	chr2	274605	1	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2:ENST00000409915.8:ENST00000414963.2:ENST00000487698.5:ENST00000414174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	32	2	2.33282	2.3697299999999997	2.40664	0.00677333	0.00445101	0.0462932	0.0340751
chr10	59792121	59792221	11517220	0	-	0.39	(0.36,0.39]	chr10	877718	35	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	2.06832	2.36971	2.6711	0.0122123	0.00434596	0.0702898	0.0335517
chr7	157207476	157207555	8636130	0	+	0.329114	(0.29,0.33]	chr7	659705	2	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000469336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	38	2	2.25023	2.369545	2.48886	0.0055888	0.00104393	0.0419759	0.0115949
chr11	32935135	32935235	11899078	0	+	0.52	(0.49,0.53]	chr11	909001	35	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5:ENST00000524678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	2.32512	2.36938	2.41364	0.0112538	0.00306772	0.0665375	0.0272156
chr21	31668578	31668666	18093492	0	+	0.409091	(0.39,0.42]	chr21	1533904	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	93	2	2.34868	2.36923	2.38978	4.19293e-4	7.69255e-5	0.00611538	0.00146447
chr5	149550964	149551048	6910827	0	-	0.654762	(0.59,1]	chr5	528576	1	UTR5	UTR5:EXON_MRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000657706.1:ENST00000670598.1:ENST00000523203.5:ENST00000515748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	35	2	2.04362	2.3691950000000004	2.69477	0.036186	0.020208	0.145024	0.0978331
chr8	144096186	144096250	9650295	0	+	0.65625	(0.59,1]	chr8	731511	2	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000528618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	35	2	2.04362	2.3691950000000004	2.69477	0.036186	0.020208	0.145024	0.0978331
chr1	65415017	65415117	251477	0	+	0.36	(0.33,0.36]	chr1	28747	21	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	15	58	2	2.30216	2.3690800000000003	2.436	7.32846e-4	3.31462e-4	0.00920898	0.00471504
chr1	202943777	202943863	1453211	0	-	0.569767	(0.53,0.59]	chr1	146064	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10:ENST00000367254.7:ENST00000417068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	53	2	2.23406	2.36897	2.50388	0.00870728	6.11414e-4	0.0558165	0.00763216
chr20	19823859	19823943	17921172	0	-	0.571429	(0.53,0.59]	chr20	1516821	6	EXON_PSEUDO	EXON_PSEUDO	RPL12P12	ENSG00000236992.2	ENST00000424633.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	81	2	2.34697	2.36895	2.39093	6.55436e-4	5.33622e-4	0.00860229	0.00685157
chr21	8393728	8393827	18041467	0	+	0.606061	(0.59,1]	chr21	1530861	49	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	10616	110292	2	2.19299	2.368835	2.54468	2.92236e-5	3.44739e-6	6.64641e-4	1.25142e-4
chr5	131392690	131392790	6221757	0	+	0.31	(0.29,0.33]	chr5	484085	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	38	2	1.99403	2.36876	2.74349	0.0202925	1.65851e-4	0.098158	0.00270436
chr12	47781367	47781466	12860219	0	+	0.545455	(0.53,0.59]	chr12	998325	12	UTR3	UTR3:EXON_MRNA:INTRON	SLC48A1	ENSG00000211584.14	ENST00000442892.2:ENST00000442218.3	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	1.94437	2.36874	2.79311	0.0143432	6.84253e-4	0.0783202	0.00836671
chr1	19339151	19339245	877772	0	-	0.37234	(0.36,0.39]	chr1	90666	5	UTR3	UTR3:EXON_MRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	50	2	1.78505	2.368685	2.95232	0.0228572	3.83403e-5	0.108215	8.31029e-4
chr1	54052999	54053088	1027398	0	-	0.58427	(0.53,0.59]	chr1	106652	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371341.5:ENST00000440019.5:ENST00000420738.5:ENST00000452421.5:ENST00000371337.3	protein_coding	protein_coding	protein_coding	protein_coding	7	46	2	2.30988	2.36864	2.4274	0.00643853	0.00178327	0.0452349	0.017318
chr12	55994099	55994199	12897164	0	+	0.54	(0.53,0.59]	chr12	1003857	20	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	46	2	2.30988	2.36864	2.4274	0.00643853	0.00178327	0.0452349	0.017318
chr19	46775329	46775419	17595458	0	-	0.644444	(0.59,1]	chr19	1481382	6	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	4	47	2	2.17889	2.36863	2.55837	0.025085	0.00709491	0.116848	0.0479177
chr14	102729571	102729670	14500063	0	+	0.40404	(0.39,0.42]	chr14	1133640	32	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.84882	2.36859	2.88836	0.0214409	0.0102432	0.102904	0.062872
chr5	140438460	140438538	6254177	0	+	0.448718	(0.42,0.455]	chr5	487482	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000532219.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.19674	2.3685850000000004	2.54043	0.0254904	0.00705852	0.117089	0.047732
chr11	64769075	64769129	12419231	0	-	0.537037	(0.53,0.59]	chr11	962907	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000489544.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	2.22207	2.368535	2.515	0.0292633	0.00910511	0.129773	0.0576716
chr20	1165271	1165366	17645637	0	+	0.547368	(0.53,0.59]	chr20	1491534	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PSMF1	ENSG00000125818.18	ENST00000652336.1:ENST00000333082.7:ENST00000246015.8:ENST00000335877.11:ENST00000484891.1:ENST00000381898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	27	2	2.22207	2.368535	2.515	0.0292633	0.00910511	0.129773	0.0576716
chr1	150625145	150625244	1289230	0	-	0.393939	(0.39,0.42]	chr1	128272	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8:ENST00000369014.10:ENST00000361532.9:ENST00000361631.9:ENST00000509582.5:ENST00000339643.9:ENST00000638926.1:ENST00000271690.12:ENST00000356527.9:ENST00000513281.5:ENST00000505321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	24	2	1.74181	2.36844	2.99507	0.0245629	0.00637824	0.114841	0.0449937
chr16	21835984	21836081	15889955	0	-	0.56701	(0.53,0.59]	chr16	1271456	13	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	2.23281	2.368405	2.504	0.00279409	0.00154317	0.0241702	0.0164318
chr11	47466131	47466230	12386769	0	-	0.323232	(0.29,0.33]	chr11	956932	3	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	2.0986	2.368365	2.63813	0.00919301	0.00803229	0.0581197	0.0528968
chr4	108667542	108667635	5038568	0	+	0.247312	[0,0.29]	chr4	409875	4	UTR3	UTR3:EXON_MRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9	protein_coding	protein_coding	protein_coding	protein_coding	14	51	2	2.28853	2.36834	2.44815	0.00443139	1.41931e-4	0.0344729	0.00239352
chrX	124101969	124102067	18852599	0	+	0.316327	(0.29,0.33]	chrX	1606330	15	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	52	2	1.56693	2.368275	3.16962	0.0130656	2.42328e-5	0.0729807	5.68668e-4
chr5	69168257	69168343	6019273	0	+	0.5	(0.49,0.53]	chr5	471227	2	CDS	CDS:UTR3:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	54	2	2.11783	2.36815	2.61847	0.0142725	1.68264e-4	0.0780078	0.00274115
chr12	93400076	93400176	13019154	0	+	0.34	(0.33,0.36]	chr12	1013446	8	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5	protein_coding	protein_coding	protein_coding	protein_coding	13	47	2	1.65994	2.367995	3.07605	0.0108884	6.95237e-5	0.0662244	0.00147069
chr17	41755268	41755363	16542977	0	-	0.578947	(0.53,0.59]	chr17	1356256	8	UTR3	UTR3:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	9	58	2	2.2732	2.3679449999999997	2.46269	0.00369236	7.66631e-4	0.030936	0.00915627
chr14	98972878	98972962	14784434	0	-	0.488095	(0.455,0.49]	chr14	1158427	1	EXON_PSEUDO	EXON_PSEUDO	RPL3P4	ENSG00000232573.1	ENST00000417615.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	75	2	2.30255	2.36794	2.43333	9.86428e-4	2.41722e-4	0.0117367	0.00366027
chr3	160433904	160433999	3853122	0	+	0.252632	[0,0.29]	chr3	327498	2	UTR3	UTR3:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	15	2	2.11932	2.3678	2.61628	0.0332641	0.0101434	0.137922	0.0626311
chr2	96186039	96186138	2789821	0	-	0.515152	(0.49,0.53]	chr2	248609	13	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	80	2	2.3235	2.367705	2.41191	4.14843e-4	3.6134e-4	0.00607555	0.00506061
chr6	90516304	90516402	7843509	0	-	0.346939	(0.33,0.36]	chr6	600991	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8:ENST00000479630.1:ENST00000369320.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	24	2	1.69981	2.367665	3.03552	0.0370662	0.0012034	0.145667	0.0134762
chr20	2461694	2461755	17878926	0	-	0.52459	(0.49,0.53]	chr20	1512812	2	UTR3	UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	80	2	2.23125	2.367515	2.50378	7.11284e-4	2.06209e-4	0.00856	0.00349719
chr12	49990082	49990174	13327176	0	-	0.358696	(0.33,0.36]	chr12	1046307	11	UTR3	UTR3:EXON_MRNA:INTRON	RACGAP1	ENSG00000161800.13	ENST00000548961.5:ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.57515	2.367455	3.15976	0.0299562	0.00437542	0.130016	0.0340502
chr1	160305687	160305746	1328846	0	-	0.440678	(0.42,0.455]	chr1	136040	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000647899.1:ENST00000648632.1:ENST00000481522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	35	2	1.86513	2.36738	2.86963	0.0357107	4.62477e-4	0.147298	0.00613242
chr5	166382304	166382402	6357344	0	+	0.510204	(0.49,0.53]	chr5	494315	1	EXON_PSEUDO	EXON_PSEUDO	CTB-63M22.1	ENSG00000229119.3	ENST00000518938.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	26	142	2	2.1481	2.36732	2.58654	4.95524e-4	8.89295e-6	0.00694781	2.50128e-4
chr6	33301463	33301562	7669217	0	-	0.585859	(0.53,0.59]	chr6	587559	19	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	10	65	2	1.67949	2.367145	3.0548	0.0184962	5.01853e-5	0.0932453	0.00103096
chr1	35193049	35193145	936855	0	-	0.572917	(0.53,0.59]	chr1	98520	1	UTR5	UTR5:EXON_MRNA	SFPQ	ENSG00000116560.11	ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	14	84	2	1.8412	2.36708	2.89296	0.00429353	5.81444e-5	0.0336045	0.00116944
chrX	53379605	53379705	19076618	0	-	0.5	(0.49,0.53]	chrX	1622486	56	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.2359	2.366935	2.49797	0.00843736	0.00449268	0.0546021	0.0343656
chr17	2307914	2308011	16085141	0	+	0.319588	(0.29,0.33]	chr17	1293490	2	INTRON	INTRON	SRR	ENSG00000167720.13	ENST00000572709.5:ENST00000344595.10:ENST00000576848.1:ENST00000576620.5:ENST00000575840.5:ENST00000574987.1:ENST00000570662.2	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.06067	2.36672	2.67277	0.0384863	0.0255386	0.149227	0.117089
chr18	73171767	73171862	17175423	0	-	0.315789	(0.29,0.33]	chr18	1409660	14	INTRON	INTRON	LINC02864	ENSG00000263711.6	ENST00000584544.5:ENST00000581011.5:ENST00000581862.6:ENST00000669547.1:ENST00000661525.1	lncRNA	lncRNA	lncRNA	lncRNA	3	13	2	2.06067	2.36672	2.67277	0.0384863	0.0255386	0.149227	0.117089
chr8	22005387	22005487	9222138	0	+	0.32	(0.29,0.33]	chr8	705059	4	UTR3	UTR3:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.06067	2.36672	2.67277	0.0384863	0.0255386	0.149227	0.117089
chr1	244409287	244409386	1590666	0	-	0.333333	(0.33,0.36]	chr1	158292	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-518L10.5:ADSS2	ENSG00000240963.1:ENSG00000035687.10	ENST00000417765.1:ENST00000366535.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	21	2	2.31697	2.366685	2.4164	0.011989	0.00966431	0.0700473	0.0606263
chr1	95193945	95194044	362126	0	+	0.282828	[0,0.29]	chr1	35683	22	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	9	32	2	2.03267	2.36666	2.70065	0.0131453	5.07704e-4	0.0733537	0.00660682
chr12	67305302	67305401	12934059	0	+	0.363636	(0.36,0.39]	chr12	1008094	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	2.10159	2.36637	2.63115	0.0245975	0.00841765	0.114841	0.0543584
chrX	24077749	24077845	18616690	0	+	0.34375	(0.33,0.36]	chrX	1589843	11	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	19	74	2	2.25252	2.3661149999999997	2.47971	3.80395e-4	2.03083e-4	0.00568871	0.0031947
chr4	118278708	118278804	5071404	0	+	0.510417	(0.49,0.53]	chr4	411691	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG8	ENSG00000269893.8	ENST00000654083.1:ENST00000602520.5:ENST00000667980.1:ENST00000665363.1:ENST00000602414.6:ENST00000602819.6:ENST00000602483.5:ENST00000652022.1	lncRNA	lncRNA	lncRNA	lncRNA	11	63	2	2.18417	2.3659749999999997	2.54778	0.00578816	1.5436e-4	0.0427749	0.00257254
chr17	81859326	81859387	16709670	0	-	0.622951	(0.59,1]	chr17	1377721	2	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000681872.1:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000680719.1:ENST00000680191.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000679366.1:ENST00000681020.1:ENST00000681485.1:ENST00000679628.1:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6:ENST00000680732.1:ENST00000680838.1:ENST00000680847.1:ENST00000574007.6:ENST00000573778.7:ENST00000576380.6:ENST00000576052.2:ENST00000471535.2:ENST00000576541.2:ENST00000467086.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	116	2	1.72077	2.365935	3.0111	0.0137395	1.19375e-4	0.0760883	0.00208353
chrX	302179	302277	18549184	0	+	0.530612	(0.53,0.59]	chrX	1585413	30	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	2.0728	2.36587	2.65894	0.0193255	0.0086901	0.0943643	0.0559355
chr6	159680304	159680403	8048208	0	-	0.333333	(0.33,0.36]	chr6	615183	114	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	2.28792	2.36586	2.4438	0.0239159	9.36025e-4	0.112531	0.0105869
chr5	137751848	137751948	6858078	0	-	0.37	(0.36,0.39]	chr5	524499	63	UTR3	UTR3:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.66836	2.36564	3.06292	0.0474647	0.00499846	0.17993	0.0370021
chr20	38092065	38092164	17782077	0	+	0.454545	(0.42,0.455]	chr20	1502505	23	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000373433.9:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	33	2	2.34191	2.365605	2.3893	0.0159091	0.00221606	0.0854674	0.0205138
chr11	78079744	78079804	12477646	0	-	0.55	(0.53,0.59]	chr11	970667	1	UTR5	UTR5:EXON_MRNA	NDUFC2-KCTD14:NDUFC2	ENSG00000259112.2:ENSG00000151366.13	ENST00000528251.1:ENST00000530054.1:ENST00000612612.5:ENST00000614236.2:ENST00000281031.5:ENST00000527806.1:ENST00000534029.5:ENST00000525085.1:ENST00000528164.1	protein_coding	protein_coding	protein_coding	protein_coding	6	39	2	1.60161	2.36552	3.12943	0.0451605	4.81557e-4	0.167576	0.00677016
chr11	65855335	65855435	12423158	0	-	0.6	(0.59,1]	chr11	964156	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	CFL1	ENSG00000172757.13	ENST00000527752.1:ENST00000308162.10:ENST00000525451.6:ENST00000530945.1:ENST00000527344.5:ENST00000531407.5:ENST00000524553.5:ENST00000534769.5:ENST00000531413.5:ENST00000532134.5:ENST00000530413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	165	2	1.94305	2.3654200000000003	2.78779	0.00303351	1.12848e-4	0.0269316	0.0020041
chr15	41303136	41303236	14885452	0	+	0.45	(0.42,0.455]	chr15	1169280	52	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	7	36	2	2.2473	2.364945	2.48259	0.0048106	0.0031851	0.0371037	0.0267166
chr7	73295724	73295812	8331793	0	+	0.568182	(0.53,0.59]	chr7	634438	1	EXON_PSEUDO	EXON_PSEUDO	POM121B	ENSG00000205578.6	ENST00000380760.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	4	28	2	2.2596	2.3648	2.47	0.0185443	0.0089333	0.0948733	0.0567495
chr3	150546051	150546135	4517240	0	-	0.583333	(0.53,0.59]	chr3	374954	1	CDS_START	CDS_START:CDS:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1:ENST00000491660.1	protein_coding	protein_coding	protein_coding	protein_coding	11	67	2	2.09406	2.3647099999999996	2.63536	0.00212471	6.09389e-4	0.0198408	0.00818575
chrX	78131021	78131119	19129689	0	-	0.408163	(0.39,0.42]	chrX	1626920	14	UTR3	UTR3:EXON_MRNA	TAF9B	ENSG00000187325.5	ENST00000341864.6	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.98676	2.364595	2.74243	0.0439902	0.00369167	0.163596	0.030936
chr1	153665662	153665728	1298444	0	-	0.530303	(0.53,0.59]	chr1	130404	1	CDS	CDS:EXON_MRNA	ILF2	ENSG00000143621.17	ENST00000615950.4:ENST00000361891.9:ENST00000368684.8	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	2.35511	2.364565	2.37402	0.0445399	0.00230837	0.172163	0.0211205
chrM	2427	2524	19377163	0	+	0.412371	(0.39,0.42]	chrM	1649798	20	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	4237	18065	2	2.10654	2.364515	2.62249	4.96165e-6	1.43217e-8	1.54226e-4	1.15677e-6
chr3	37276895	37276994	3411514	0	+	0.242424	[0,0.29]	chr3	296407	4	INTRON	INTRON	GOLGA4	ENSG00000144674.16	ENST00000361924.6:ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000617480.4:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	34	2	1.36048	2.364455	3.36843	0.0289523	3.09234e-4	0.127375	0.00477565
chr19	19506857	19506956	17263988	0	+	0.424242	(0.42,0.455]	chr19	1426397	15	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	52	2	2.11744	2.3644	2.61136	0.00497755	3.33599e-4	0.0381953	0.00472923
chr12	21657748	21657842	13236842	0	-	0.606383	(0.59,1]	chr12	1037994	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	RP11-501E24.9:LDHB	ENSG00000285854.1:ENSG00000111716.14	ENST00000647960.1:ENST00000350669.5:ENST00000673047.2:ENST00000396076.5:ENST00000450584.5:ENST00000539782.1:ENST00000544151.1:ENST00000535112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	173	2	2.22106	2.36411	2.50716	0.00227028	1.41809e-4	0.0215634	0.0023917
chr1	65414718	65414818	251474	0	+	0.29	[0,0.29]	chr1	28747	18	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	2.16096	2.3640800000000004	2.5672	0.00733882	0.00216014	0.0491503	0.0208941
chrX	110177196	110177295	18820978	0	+	0.292929	(0.29,0.33]	chrX	1603939	39	UTR3	UTR3:EXON_MRNA:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000464177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	24	2	2.27431	2.36402	2.45373	0.0156405	0.00432139	0.084273700000000007	0.0335176
chr3	42794156	42794253	4142275	0	-	0.443299	(0.42,0.455]	chr3	346322	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP4-613B23.5:HIGD1A:RP11-70C1.3	ENSG00000280571.2:ENSG00000181061.14:ENSG00000235288.3	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5:ENST00000625589.2:ENST00000452906.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	31	2	1.7601	2.3639900000000003	2.96788	0.0312663	0.00109784	0.132093	0.0119666
chr6	125301848	125301932	7933189	0	-	0.654762	(0.59,1]	chr6	607292	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HDDC2	ENSG00000111906.18	ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000608461.1:ENST00000608284.1:ENST00000609574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	56	2	2.01575	2.363985	2.71222	0.0201728	0.00398753	0.0978331	0.031888
chr7	127591379	127591459	8514805	0	+	0.575	(0.53,0.59]	chr7	649588	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF5:FSCN3	ENSG00000004059.11:ENSG00000106328.10	ENST00000463733.5:ENST00000000233.10:ENST00000478328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	68	2	2.01641	2.363845	2.71128	0.0108917	9.48387e-5	0.0645168	0.0017288
chr10	102107242	102107337	11668481	0	-	0.568421	(0.53,0.59]	chr10	889648	9	UTR3	UTR3:EXON_MRNA	LDB1	ENSG00000198728.11	ENST00000673968.1	protein_coding	protein_coding	protein_coding	protein_coding	8	38	2	1.34395	2.36371	3.38347	0.0477987	0.00132446	0.1801	0.0138834
chr21	33558115	33558209	18101241	0	+	0.255319	[0,0.29]	chr21	1534538	7	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	28	2	2.11113	2.3637050000000004	2.61628	0.0101434	0.00342811	0.0626311	0.0283582
chr8	124998804	124998904	9595349	0	+	0.68	(0.59,1]	chr8	727885	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	5	57	2	2.34108	2.36361	2.38614	0.0128707	0.00648714	0.0725185	0.0454205
chr6	26281094	26281193	7647334	0	-	0.464646	(0.455,0.49]	chr6	582588	3	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	37	2	1.80621	2.3636	2.92099	0.012455	0.00138399	0.0710484	0.0143168
chr13	112546974	112547072	14159329	0	-	0.408163	(0.39,0.42]	chr13	1107575	6	UTR3	UTR3:EXON_MRNA:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000611152.1:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	1.99911	2.363565	2.72802	0.0477207	3.73817e-4	0.17993	0.00520009
chr11	46759355	46759442	12383644	0	-	0.551724	(0.53,0.59]	chr11	956034	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000527333.5:ENST00000526876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	35	2	2.16037	2.3635099999999998	2.56665	0.0254312	0.00209536	0.117089	0.0196588
chr11	64203124	64203176	11979311	0	+	0.538462	(0.53,0.59]	chr11	918735	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1:ENST00000355603.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	35	2	2.16037	2.3635099999999998	2.56665	0.0254312	0.00209536	0.117089	0.0196588
chr20	47249362	47249439	17993512	0	-	0.532468	(0.53,0.59]	chr20	1524987	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	29	2	1.61377	2.36326	3.11275	0.0436338	0.00407571	0.170594	0.032143
chr2	9584342	9584437	2508157	0	-	0.410526	(0.39,0.42]	chr2	226349	5	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	15	70	2	2.35855	2.3631900000000003	2.36783	9.23937e-4	2.31761e-4	0.0111585	0.00354435
chr7	100038192	100038292	8425136	0	+	0.35	(0.33,0.36]	chr7	642421	41	UTR3	UTR3:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	1.81756	2.36314	2.90872	0.0223533	4.00944e-4	0.106046	0.00548902
chr3	38255184	38255284	3420138	0	+	0.34	(0.33,0.36]	chr3	297237	24	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.07736	2.3629350000000002	2.64851	0.0442037	0.00492353	0.172163	0.0366648
chr4	151104493	151104593	5165602	0	+	0.47	(0.455,0.49]	chr4	417331	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000514682.5:ENST00000512690.5:ENST00000512797.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding	12	63	2	2.18674	2.36275	2.53876	0.0034804	1.64036e-4	0.0295021	0.00268619
chr17	49051907	49052006	16256665	0	+	0.434343	(0.42,0.455]	chr17	1317683	26	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	10	48	2	1.59752	2.362735	3.12795	0.0221403	1.0291e-4	0.105595	0.00184556
chr15	52547243	52547343	15287460	0	-	0.28	[0,0.29]	chr15	1206631	3	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9	protein_coding	protein_coding	protein_coding	protein_coding	15	62	2	1.55562	2.362655	3.16969	0.0332276	1.59925e-6	0.139614	5.93501e-5
chr2	216132324	216132387	2379976	0	+	0.396825	(0.39,0.42]	chr2	213805	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	38	2	2.02403	2.362655	2.70128	0.0111868	5.30354e-4	0.0665375	0.00739546
chr5	139478269	139478357	6867232	0	-	0.579545	(0.53,0.59]	chr5	525700	1	CDS	CDS:UTR3:EXON_MRNA	STING1	ENSG00000184584.13	ENST00000330794.9:ENST00000507297.5:ENST00000512606.6:ENST00000650883.1:ENST00000502362.2:ENST00000652271.1:ENST00000652293.1:ENST00000651565.1:ENST00000652640.1:ENST00000651699.1:ENST00000514119.6:ENST00000652110.1:ENST00000652543.1:ENST00000509573.5:ENST00000511886.6:ENST00000503287.5:ENST00000510817.2:ENST00000502825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	36	2	2.0289	2.362625	2.69635	0.0373899	0.00112127	0.146698	0.0128408
chr2	48378208	48378307	1788997	0	+	0.333333	(0.33,0.36]	chr2	172754	29	UTR3	UTR3:EXON_MRNA	FOXN2	ENSG00000170802.16	ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	2.09934	2.36254	2.62574	0.0120497	0.00176861	0.0694419	0.0172426
chr1	220032386	220032456	1511337	0	-	0.514286	(0.49,0.53]	chr1	151111	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.26641	2.362195	2.45798	0.0190546	0.00353238	0.093872	0.029076
chr9	93565620	93565719	10363320	0	+	0.313131	(0.29,0.33]	chr9	780189	12	UTR3	UTR3:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11	protein_coding	protein_coding	protein_coding	protein_coding	11	40	2	2.29415	2.3620799999999997	2.43001	0.00181907	0.00128132	0.0183913	0.0136028
chr10	75219062	75219138	11126488	0	+	0.421053	(0.42,0.455]	chr10	846649	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5:ENST00000413289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	55	2	2.24762	2.3619149999999998	2.47621	0.00161397	9.46614e-4	0.0169243	0.010681
chr9	103204478	103204578	10778052	0	-	0.4	(0.39,0.42]	chr9	815846	160	INTRON	INTRON	LINC01492	ENSG00000225564.6	ENST00000411575.5	lncRNA	lncRNA	lncRNA	lncRNA	14	68	2	2.27503	2.3619000000000003	2.44877	0.0025739	1.27771e-4	0.0235767	0.00221183
chr7	152181304	152181404	9135374	0	-	0.52	(0.49,0.53]	chr7	698409	7	CDS	CDS:UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	40	2	1.77058	2.361745	2.95291	0.0133397	0.00119735	0.0743125	0.0134293
chr5	178055950	178056047	6410847	0	+	0.505155	(0.49,0.53]	chr5	498581	7	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:INTRON	FAM153CP:RP11-889L3.1	ENSG00000204677.13:ENSG00000218227.3	ENST00000652765.1:ENST00000651508.1:ENST00000652706.2:ENST00000511189.3:ENST00000652372.1:ENST00000651413.2:ENST00000651496.2:ENST00000652760.2:ENST00000651248.2:ENST00000662167.1:ENST00000652262.2:ENST00000669380.1:ENST00000652571.2:ENST00000651447.2:ENST00000651969.2:ENST00000668044.1:ENST00000663123.1:ENST00000651697.2:ENST00000652167.1:ENST00000652694.2:ENST00000663505.1:ENST00000667131.1:ENST00000651398.2:ENST00000511511.6:ENST00000506096.6:ENST00000651406.1:ENST00000652057.1:ENST00000652464.2:ENST00000511819.6:ENST00000477964.1	lncRNA	retained_intron	lncRNA:transcribed_processed_pseudogene	retained_intron:lncRNA:transcribed_processed_pseudogene	11	66	2	2.11783	2.36172	2.60561	0.0142725	6.58293e-5	0.0780078	0.00128463
chr7	56101664	56101757	8827410	0	-	0.473118	(0.455,0.49]	chr7	673685	2	UTR3	UTR3:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4	protein_coding	protein_coding	protein_coding	protein_coding	13	64	2	1.91811	2.36164	2.80517	0.00411364	1.00884e-4	0.0325842	0.00181604
chr8	47943208	47943287	9817261	0	-	0.417722	(0.39,0.42]	chr8	742889	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	2.18155	2.361635	2.54172	0.0283931	0.00247353	0.127654	0.0223024
chr16	31492977	31493048	15917497	0	-	0.549296	(0.53,0.59]	chr16	1276007	1	CDS	CDS:EXON_MRNA	RUSF1	ENSG00000140688.17	ENST00000570164.5:ENST00000327237.7:ENST00000568491.1:ENST00000430477.6:ENST00000567994.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	43	2	1.78041	2.36136	2.94231	0.0407112	3.05722e-4	0.163285	0.00442973
chr5	134927737	134927835	6846871	0	-	0.438776	(0.42,0.455]	chr5	523926	12	EXON_PSEUDO	EXON_PSEUDO	MTND4P12	ENSG00000247627.2	ENST00000498999.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	56	2	1.25864	2.361325	3.46401	0.0517151	1.12126e-5	0.193577	3.03388e-4
chr11	123058328	123058406	12636966	0	-	0.397436	(0.39,0.42]	chr11	980702	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HSPA8	ENSG00000109971.14	ENST00000453788.6:ENST00000533540.5:ENST00000534624.6:ENST00000532636.5:ENST00000532091.1:ENST00000227378.7:ENST00000534319.5:ENST00000526110.5:ENST00000524552.5:ENST00000526686.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	121	2	1.82798	2.3612349999999998	2.89449	0.00127425	3.08258e-6	0.0139561	1.0335e-4
chr19	810919	811013	17189583	0	+	0.340426	(0.33,0.36]	chr19	1411055	2	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	56	2	1.82066	2.36109	2.90152	0.0051643	3.9727e-5	0.0381529	9.49417e-4
chr2	206161359	206161415	2337595	0	+	0.482143	(0.455,0.49]	chr2	211074	1	CDS	CDS:UTR3:EXON_MRNA	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000445505.5:ENST00000429769.5:ENST00000392222.7:ENST00000415904.1:ENST00000455150.1:ENST00000435123.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	43	2	2.26324	2.3610800000000003	2.45892	0.00868189	8.02402e-4	0.0558093	0.00943079
chr15	31326928	31327023	14848032	0	+	0.778947	(0.59,1]	chr15	1165879	2	UTR5	UTR5:EXON_MRNA	KLF13	ENSG00000169926.11	ENST00000307145.4	protein_coding	protein_coding	protein_coding	protein_coding	2	26	2	2.32455	2.3610100000000003	2.39747	0.0520547	0.0430221	0.193787	0.161091
chr19	7623730	7623806	17447036	0	-	0.697368	(0.59,1]	chr19	1457886	1	CDS	CDS:EXON_MRNA	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.32455	2.3610100000000003	2.39747	0.0520547	0.0430221	0.193787	0.161091
chr19	10321117	10321188	17459346	0	-	0.788732	(0.59,1]	chr19	1460742	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAVER1	ENSG00000161847.14	ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000585935.5:ENST00000593136.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	26	2	2.32455	2.3610100000000003	2.39747	0.0520547	0.0430221	0.193787	0.161091
chr21	37073473	37073573	18114228	0	+	0.67	(0.59,1]	chr21	1535843	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC3	ENSG00000182670.13	ENST00000492275.5:ENST00000418766.5:ENST00000485402.5:ENST00000438055.5:ENST00000450533.5:ENST00000355666.5:ENST00000481605.5:ENST00000463216.5:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	26	2	2.32455	2.3610100000000003	2.39747	0.0520547	0.0430221	0.193787	0.161091
chr19	12884698	12884791	17471801	0	-	0.55914	(0.53,0.59]	chr19	1463271	4	UTR3	UTR3:EXON_MRNA	KLF1	ENSG00000105610.6	ENST00000264834.6	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	1.93217	2.360985	2.7898	0.0149802	0.0128364	0.0814081	0.0719798
chr7	16783776	16783871	8149507	0	+	0.368421	(0.36,0.39]	chr7	622215	4	UTR3	UTR3:EXON_MRNA	TSPAN13	ENSG00000106537.8	ENST00000262067.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.336	2.36082	2.38564	0.0476159	0.0154226	0.17993	0.0834369
chrX	48257802	48257860	18691059	0	+	0.362069	(0.36,0.39]	chrX	1593858	2	CDS	CDS:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.336	2.36082	2.38564	0.0476159	0.0154226	0.17993	0.0834369
chr11	65121738	65121813	12421570	0	-	0.613333	(0.59,1]	chr11	963726	1	CDS_START	CDS_START:CDS:EXON_MRNA	FAU:SYVN1	ENSG00000149806.11:ENSG00000162298.19	ENST00000529639.6:ENST00000531743.5:ENST00000527548.5:ENST00000525297.5:ENST00000531357.1:ENST00000279259.7:ENST00000529259.1:ENST00000526555.5:ENST00000434372.2:ENST00000530451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	210	2	2.08529	2.360615	2.63594	7.61904e-4	1.93367e-4	0.00910324	0.00331847
chr18	21869855	21869955	16779547	0	+	0.25	[0,0.29]	chr18	1384234	53	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.15488	2.360395	2.56591	0.0436536	0.00106789	0.170594	0.0118238
chr11	64769963	64770033	12419243	0	-	0.485714	(0.455,0.49]	chr11	962916	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000433274.6:ENST00000486960.5:ENST00000496969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	50	2	1.97839	2.3602499999999997	2.74211	0.00330545	0.00217457	0.028478	0.0202707
chr21	31659717	31659769	18093396	0	+	0.634615	(0.59,1]	chr21	1533870	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	77	2	2.04605	2.36003	2.67401	0.0103872	0.00166951	0.0640167	0.0173932
chr2	131050362	131050462	2875704	0	-	0.46	(0.455,0.49]	chr2	257460	26	UTR3	UTR3:EXON_MRNA	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.72305	2.359875	2.9967	0.0324537	0.00650423	0.134899	0.0454205
chr4	56490567	56490645	4849026	0	+	0.410256	(0.39,0.42]	chr4	399551	1	CDS	CDS:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000646579.1:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	40	2	1.63008	2.359785	3.08949	0.0358647	1.31388e-4	0.147298	0.00226623
chr2	74155286	74155384	2740223	0	-	0.265306	[0,0.29]	chr2	243880	29	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.16074	2.359635	2.55853	0.0222978	0.007538	0.105845	0.0497903
chr11	57672895	57672992	11951851	0	+	0.402062	(0.39,0.42]	chr11	914646	10	UTR5	UTR5:EXON_MRNA:INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.99911	2.359115	2.71912	0.0477207	0.0163125	0.17993	0.0866586
chr15	34982642	34982741	15207849	0	-	0.393939	(0.39,0.42]	chr15	1197460	13	CDS	CDS:EXON_MRNA	ZNF770	ENSG00000198146.4	ENST00000356321.4	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.99911	2.359115	2.71912	0.0477207	0.0163125	0.17993	0.0866586
chr19	48922708	48922803	17367853	0	+	0.652632	(0.59,1]	chr19	1442160	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	93	2	1.74674	2.359065	2.97139	0.0158071	3.85356e-4	0.085143	0.00531819
chr7	138551121	138551180	8563200	0	+	0.38983	(0.36,0.39]	chr7	653261	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	2.08671	2.35893	2.63115	0.0245975	0.01635	0.114841	0.0867615
chr17	8379871	8379936	16432832	0	-	0.4	(0.39,0.42]	chr17	1340552	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-849F2.7:RPL26	ENSG00000263809.1:ENSG00000161970.15	ENST00000582471.1:ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000578069.1:ENST00000584441.5:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6:ENST00000578812.5:ENST00000583515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	74	2	1.71376	2.3588649999999998	3.00397	0.00313895	8.22558e-5	0.0264943	0.0017048
chr7	144647979	144648078	9120723	0	-	0.383838	(0.36,0.39]	chr7	696680	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	TPK1:EEF1A1P10	ENSG00000196511.14:ENSG00000243746.1	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5:ENST00000475365.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	11	54	2	2.06832	2.35886	2.6494	0.0122123	7.99975e-5	0.0702898	0.00151453
chr12	108646005	108646105	13530483	0	-	0.52	(0.49,0.53]	chr12	1063929	10	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.01464	2.358855	2.70307	0.0205094	0.00363585	0.0991175	0.0298137
chr19	50798933	50799031	17611877	0	-	0.581633	(0.53,0.59]	chr19	1485211	13	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C19orf48	ENSG00000167747.15	ENST00000641834.1:ENST00000598463.5:ENST00000596655.1:ENST00000596287.5:ENST00000597705.5:ENST00000597493.5:ENST00000593287.5:ENST00000600373.5:ENST00000601267.5:ENST00000595794.5:ENST00000596554.5:ENST00000599004.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript	5	32	2	2.21316	2.358815	2.50447	0.0301162	0.00482336	0.130016	0.0371856
chr12	884935	885030	12681419	0	+	0.547368	(0.53,0.59]	chr12	984118	4	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	38	2	2.0728	2.358775	2.64475	0.0086901	0.00453071	0.0559355	0.0351187
chr7	128841266	128841363	8522358	0	+	0.57732000000000006	(0.53,0.59]	chr7	650350	2	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6:ENST00000388853.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	22	2	2.35511	2.3587749999999996	2.36244	0.0445399	0.0131162	0.172163	0.073569
chrX	101413142	101413238	18786570	0	+	0.552083	(0.53,0.59]	chrX	1601436	12	CDS	CDS:EXON_MRNA	HNRNPH2	ENSG00000126945.9	ENST00000316594.6	protein_coding	protein_coding	protein_coding	protein_coding	3	22	2	2.35511	2.3587749999999996	2.36244	0.0445399	0.0131162	0.172163	0.073569
chr4	176329210	176329308	5242233	0	+	0.326531	(0.29,0.33]	chr4	421869	10	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	14	55	2	2.22839	2.3587	2.48901	0.00486332	1.0358e-4	0.0374757	0.0018571
chr21	8256780	8256856	18041330	0	+	0.513158	(0.49,0.53]	chr21	1530846	1	EXON_SMALL	EXON_SMALL	5_8S_rRNA	ENSG00000277739.1	ENST00000610460.1	rRNA	rRNA	rRNA	rRNA	786	3953	2	2.29887	2.358695	2.41852	1.01814e-6	4.11648e-7	4.49791e-5	1.87783e-5
chr5	151790907	151790984	6299610	0	+	0.467532	(0.455,0.49]	chr5	491904	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000678750.1:ENST00000677687.1:ENST00000678372.1:ENST00000677211.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	42	2	2.35761	2.3586650000000002	2.35972	0.0058634	0.00138275	0.0427941	0.0143168
chr2	9584625	9584719	2508160	0	-	0.414894	(0.39,0.42]	chr2	226349	8	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	11	53	2	1.961	2.358595	2.75619	0.00719538	1.38708e-4	0.0486209	0.00235122
chr4	77037944	77038039	4900567	0	+	0.442105	(0.42,0.455]	chr4	403561	13	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	41	2	2.3277	2.3585000000000003	2.3893	0.00333145	0.00221606	0.0286606	0.0205138
chr1	110401248	110401339	1222269	0	-	0.351648	(0.33,0.36]	chr1	119458	1	UTR3	UTR3:EXON_MRNA	LAMTOR5	ENSG00000134248.14	ENST00000464240.1:ENST00000474861.6:ENST00000483260.5:ENST00000256644.8:ENST00000602318.6:ENST00000602858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	29	2	2.26699	2.358425	2.44986	0.00563343	0.00427416	0.0422191	0.0332637
chr4	87161370	87161468	5516788	0	-	0.397959	(0.39,0.42]	chr4	441810	14	UTR3	UTR3:EXON_MRNA	KLHL8	ENSG00000145332.14	ENST00000273963.10:ENST00000498875.6:ENST00000425278.6	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.01081	2.3583600000000002	2.70591	0.0207537	0.0185716	0.100574	0.0932453
chr1	15876582	15876678	71291	0	+	0.53125	(0.53,0.59]	chr1	8057	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8:ENST00000438066.1:ENST00000471538.1:ENST00000442985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	26	2	2.05734	2.3581399999999997	2.65894	0.0193255	0.0167029	0.0943643	0.0883198
chr17	4897770	4897867	16094203	0	+	0.56701	(0.53,0.59]	chr17	1294839	6	UTR3	UTR3:EXON_MRNA	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000571207.5:ENST00000574871.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.05734	2.3581399999999997	2.65894	0.0193255	0.0167029	0.0943643	0.0883198
chr8	47974754	47974800	9316276	0	+	0.543478	(0.53,0.59]	chr8	713587	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000647877.1:ENST00000520637.2:ENST00000518382.1:ENST00000521261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	26	2	2.05734	2.3581399999999997	2.65894	0.0193255	0.0167029	0.0943643	0.0883198
chr12	31280873	31280969	13279786	0	-	0.427083	(0.42,0.455]	chr12	1041229	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-627K11.6:SINHCAF	ENSG00000275097.1:ENSG00000139146.14	ENST00000622889.1:ENST00000337682.9:ENST00000539409.5:ENST00000448582.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	5	25	2	1.96397	2.358135	2.7523	0.0153283	0.0138503	0.0828908	0.0759947
chr5	44814912	44815007	5961577	0	+	0.421053	(0.42,0.455]	chr5	467217	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.96397	2.358135	2.7523	0.0153283	0.0138503	0.0828908	0.0759947
chr1	151262179	151262279	471334	0	+	0.53	(0.49,0.53]	chr1	48079	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMD4	ENSG00000159352.16	ENST00000368881.8:ENST00000368884.8:ENST00000461434.1:ENST00000462970.5:ENST00000476855.5:ENST00000437736.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	28	2	1.56396	2.358015	3.15207	0.0388812	0.00347189	0.158355	0.0286293
chrX	109641832	109641932	19168156	0	-	0.29	[0,0.29]	chrX	1630379	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACSL4	ENSG00000068366.21	ENST00000505075.1:ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	21	2	2.20534	2.357565	2.50979	0.0117033	0.00608277	0.0685676	0.0438976
chr5	150094581	150094674	6293948	0	+	0.462366	(0.455,0.49]	chr5	491108	4	EXON_PSEUDO	EXON_PSEUDO	RPL7P1	ENSG00000214485.6	ENST00000468161.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	88	2	2.19799	2.35751	2.51703	6.27405e-4	8.20331e-5	0.00780219	0.00170103
chr2	15379601	15379677	2528266	0	-	0.473684	(0.455,0.49]	chr2	227409	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5:ENST00000441755.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	2.12994	2.3573649999999997	2.58479	0.0304832	0.00200187	0.130204	0.0189555
chr18	36159734	36159830	16825194	0	+	0.458333	(0.455,0.49]	chr18	1387628	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	34	2	1.78554	2.357275	2.92901	0.0178667	0.00141135	0.0936098	0.0151901
chr5	176528158	176528255	6988777	0	-	0.360825	(0.36,0.39]	chr5	534353	16	UTR3	UTR3:EXON_MRNA	RNF44	ENSG00000146083.12	ENST00000274811.9	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.94692	2.357205	2.76749	0.0192083	0.00287858	0.0943643	0.0247002
chr11	27890933	27891033	12317028	0	-	0.51	(0.49,0.53]	chr11	952778	22	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	39	2	2.25637	2.357175	2.45798	0.00420813	0.00353238	0.0329484	0.029076
chr14	99510682	99510782	14481780	0	+	0.71	(0.59,1]	chr14	1131384	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	CCNK	ENSG00000090061.17	ENST00000389879.9:ENST00000555049.5:ENST00000553865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	26	2	2.28778	2.357085	2.42639	0.0556537	0.0409084	0.191528	0.163285
chr11	9588602	9588700	11793797	0	+	0.459184	(0.455,0.49]	chr11	903118	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000530175.5:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	2.04847	2.35705	2.66563	0.0192065	0.0043075	0.0943643	0.0334284
chr8	108239957	108240001	10002698	0	-	0.409091	(0.39,0.42]	chr8	754219	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	98	2	2.0052	2.356955	2.70871	0.00135462	1.35073e-5	0.0146656	3.53336e-4
chr20	41124189	41124288	17790178	0	+	0.242424	[0,0.29]	chr20	1503539	10	UTR3	UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	2.15488	2.356705	2.55853	0.0436536	0.007538	0.170594	0.0497903
chr3	40309784	40309862	3429089	0	+	0.576923	(0.53,0.59]	chr3	298210	2	UTR5	UTR5:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1:ENST00000488260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	126	2	2.23281	2.356675	2.48054	0.00154317	2.79138e-5	0.0164318	6.39185e-4
chr14	35262652	35262748	14225071	0	+	0.458333	(0.455,0.49]	chr14	1113783	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PRORP:RP11-561B11.2:RPL9P3	ENSG00000100890.16:ENSG00000258790.1:ENSG00000240392.1	ENST00000604948.5:ENST00000557565.1:ENST00000534898.9:ENST00000321130.14:ENST00000250377.11:ENST00000603544.5:ENST00000605870.5:ENST00000557404.3:ENST00000475906.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	6	28	2	1.86152	2.35662	2.85172	0.0133542	0.010864	0.0743429	0.0643837
chr12	31791184	31791279	13283308	0	-	0.252632	[0,0.29]	chr12	1041529	1	UTR3	UTR3:EXON_MRNA	H3-5	ENSG00000188375.5	ENST00000340398.5	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	1.72144	2.35644	2.99144	0.0389538	0.00112713	0.158558	0.0122637
chr10	43386736	43386831	11461760	0	-	0.505263	(0.49,0.53]	chr10	873955	1	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	26	135	2	2.31893	2.356335	2.39374	9.79521e-5	6.79633e-5	0.00193581	0.00131985
chr1	44739932	44739987	173767	0	+	0.6	(0.59,1]	chr1	22300	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.19052	2.35601	2.5215	0.032241	0.0237927	0.135671	0.109413
chr7	116499781	116499881	8475322	0	+	0.63	(0.59,1]	chr7	647283	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAV2	ENSG00000105971.15	ENST00000484871.5:ENST00000485561.5:ENST00000472470.5:ENST00000467035.5:ENST00000477018.5:ENST00000498493.5:ENST00000462876.5:ENST00000478226.5:ENST00000222693.5:ENST00000343213.2:ENST00000393480.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.19052	2.35601	2.5215	0.032241	0.0237927	0.135671	0.109413
chr16	89561226	89561297	15810083	0	+	0.774648	(0.59,1]	chr16	1258671	1	CDS	CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	272	2	2.12161	2.35589	2.59017	6.25389e-4	6.63515e-5	0.00777933	0.00141636
chr1	30872421	30872520	915893	0	-	0.444444	(0.42,0.455]	chr1	95914	31	UTR3	UTR3:EXON_MRNA	SDC3	ENSG00000162512.16	ENST00000339394.7:ENST00000336798.11	protein_coding	protein_coding	protein_coding	protein_coding	14	70	2	2.1708	2.35581	2.54082	0.001598	1.61532e-4	0.0169168	0.00265627
chr7	105111917	105112011	8449876	0	+	0.382979	(0.36,0.39]	chr7	645366	2	CDS	CDS:UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	29	2	2.02118	2.355765	2.69035	0.0251625	0.00123789	0.117055	0.013161
chr20	47221393	47221474	17993226	0	-	0.54321	(0.53,0.59]	chr20	1524946	2	CDS	CDS:EXON_MRNA:INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4	protein_coding	protein_coding	protein_coding	protein_coding	7	45	2	2.26097	2.3557449999999998	2.45052	0.00389622	0.00355092	0.0313006	0.0300049
chr1	47280336	47280433	985989	0	-	0.525773	(0.49,0.53]	chr1	104121	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	46	2	2.21413	2.3556150000000002	2.4971	0.00995539	6.41492e-4	0.0621728	0.00796686
chr1	55063584	55063681	203849	0	+	0.608247	(0.59,1]	chr1	26182	1	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	45	2	2.21052	2.35496	2.4994	0.0333573	0.010462	0.137922	0.063428
chr1	6591016	6591114	845343	0	-	0.520408	(0.49,0.53]	chr1	85371	4	UTR3	UTR3:EXON_MRNA	KLHL21	ENSG00000162413.16	ENST00000377663.3:ENST00000377658.8	protein_coding	protein_coding	protein_coding	protein_coding	11	55	2	1.95752	2.354835	2.75215	0.00314981	8.79689e-4	0.0265669	0.0107294
chr1	161540280	161540380	500760	0	+	0.49	(0.455,0.49]	chr1	54270	135	INTRON	INTRON	RP11-25K21.6	ENSG00000273112.1	ENST00000537821.2	lncRNA	lncRNA	lncRNA	lncRNA	165	830	2	1.95549	2.35475	2.75401	4.76854e-5	3.47273e-8	0.00109049	2.25577e-6
chr8	47828257	47828347	9816043	0	-	0.344444	(0.33,0.36]	chr8	742591	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.00765	2.35475	2.70185	0.0287001	0.00121183	0.128757	0.0129756
chr15	42569795	42569894	14892759	0	+	0.30303	(0.29,0.33]	chr15	1170560	31	UTR3	UTR3:EXON_MRNA	HAUS2	ENSG00000137814.12	ENST00000260372.8	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.34203	2.354725	2.36742	0.0147368	0.010113	0.0801529	0.0626311
chr11	34097697	34097781	11905470	0	+	0.535714	(0.53,0.59]	chr11	909582	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5:ENST00000531668.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	75	2	1.7116	2.3546	2.9976	0.00790557	7.21865e-5	0.0516646	0.00152286
chr10	32925870	32925949	11444150	0	-	0.443038	(0.42,0.455]	chr10	872671	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	65	2	2.04128	2.354505	2.66773	0.00699169	6.96894e-5	0.0475909	0.00134514
chr1	8354687	8354787	847368	0	-	0.54	(0.53,0.59]	chr1	85701	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000467350.1:ENST00000400907.6:ENST00000476556.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.16037	2.354405	2.54844	0.0254312	0.00663226	0.117089	0.0461575
chr1	182876446	182876541	595067	0	+	0.484211	(0.455,0.49]	chr1	61628	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000490519.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	32	2	2.23479	2.354355	2.47392	0.0209335	0.00157443	0.101282	0.016717
chr22	21772872	21772927	18442483	0	-	0.563636	(0.53,0.59]	chr22	1572521	1	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	10	77	2	1.90953	2.35431	2.79909	0.0517711	1.78106e-5	0.193577	4.4397e-4
chr19	48965507	48965607	17368082	0	+	0.54	(0.53,0.59]	chr19	1442237	1	CDS_START	CDS_START:CDS:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	143	739	2	1.80211	2.3542300000000003	2.90635	1.75902e-4	6.05237e-8	0.00285264	4.01581e-6
chr11	85981744	85981775	12525957	0	-	0.419355	(0.39,0.42]	chr11	972190	1	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000530542.1:ENST00000534375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	2.21029	2.35365	2.49701	0.0339607	0.0100911	0.141431	0.0625052
chrX	134426714	134426813	18863545	0	+	0.363636	(0.36,0.39]	chrX	1607356	15	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	8	31	2	1.76426	2.35356	2.94286	0.0178361	0.00128446	0.0918323	0.0136229
chr17	47682791	47682888	16251991	0	+	0.525773	(0.49,0.53]	chr17	1316763	5	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	50	2	2.25637	2.353465	2.45056	0.00420813	8.30002e-4	0.0329484	0.00973943
chr19	10921657	10921757	17228527	0	+	0.62	(0.59,1]	chr19	1419256	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586298.1:ENST00000592516.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	42	2	1.93269	2.353435	2.77418	0.0257004	0.0160729	0.116399	0.0860154
chr1	36291459	36291546	141590	0	+	0.45977	(0.455,0.49]	chr1	17568	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	35	2	2.06803	2.3533749999999998	2.63872	0.00562101	0.00510378	0.041036	0.0390492
chr16	2765994	2766093	15494935	0	+	0.666667	(0.59,1]	chr16	1227802	46	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	8	87	2	2.32754	2.35332	2.3791	0.0035583	0.00271535	0.0300503	0.0237499
chr19	46610207	46610302	17357593	0	+	0.663158	(0.59,1]	chr19	1440686	12	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	250	2	2.07724	2.35325	2.62926	0.00100532	5.40074e-5	0.0119507	0.00109707
chr1	219988667	219988745	1510879	0	-	0.474359	(0.455,0.49]	chr1	151023	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5	protein_coding	protein_coding	protein_coding	protein_coding	10	60	2	1.80094	2.353225	2.90551	0.0265942	2.43364e-5	0.120205	5.70869e-4
chr5	176346253	176346349	6988276	0	-	0.395833	(0.39,0.42]	chr5	534216	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KIAA1191	ENSG00000122203.15	ENST00000393725.6:ENST00000298569.9:ENST00000393728.6:ENST00000614420.4:ENST00000620366.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	1.96364	2.353035	2.74243	0.00890556	0.00369167	0.0565003	0.030936
chr1	150560659	150560751	468537	0	+	0.554348	(0.53,0.59]	chr1	47508	6	UTR3	UTR3:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6:ENST00000489159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	59	2	2.08502	2.3529150000000003	2.62081	0.00828532	3.14057e-4	0.0543012	0.00452711
chr12	7814030	7814125	13192348	0	-	0.515789	(0.49,0.53]	chr12	1033373	17	UTR3	UTR3:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5:ENST00000542505.5:ENST00000396589.6:ENST00000535295.5:ENST00000539924.5	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.2359	2.35274	2.46958	0.00449268	0.00344146	0.0343656	0.0292838
chr11	62152174	62152274	11972551	0	+	0.48	(0.455,0.49]	chr11	917625	3	UTR3	UTR3:EXON_MRNA	INCENP	ENSG00000149503.13	ENST00000278849.4:ENST00000394818.8	protein_coding	protein_coding	protein_coding	protein_coding	10	47	2	1.74392	2.352655	2.96139	0.0113166	2.95549e-4	0.0665375	0.00467597
chr11	65856014	65856094	12423168	0	-	0.6	(0.59,1]	chr11	964161	2	CDS	CDS:EXON_MRNA:INTRON	CFL1	ENSG00000172757.13	ENST00000527752.1:ENST00000308162.10:ENST00000525451.6:ENST00000530945.1:ENST00000527344.5:ENST00000531407.5:ENST00000524553.5:ENST00000534769.5:ENST00000531413.5:ENST00000532134.5:ENST00000530413.1:ENST00000534784.1:ENST00000526975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	138	2	2.32809	2.35229	2.37649	0.00101098	9.67627e-4	0.011536	0.0112623
chr19	1395390	1395488	17192963	0	+	0.653061	(0.59,1]	chr19	1412118	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDUFS7	ENSG00000115286.20	ENST00000545446.5:ENST00000618074.4:ENST00000543289.5:ENST00000539480.5:ENST00000313408.11:ENST00000233627.14:ENST00000534853.5:ENST00000620479.4:ENST00000546172.7:ENST00000622587.4:ENST00000540530.5:ENST00000535382.1:ENST00000591358.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	2.11074	2.3521900000000002	2.59364	0.0305	0.0010223	0.130204	0.0113689
chr8	128096469	128096567	9615788	0	+	0.428571	(0.42,0.455]	chr8	728744	13	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000671092.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1:ENST00000667630.1	lncRNA	lncRNA	lncRNA	lncRNA	4	21	2	1.95205	2.352175	2.7523	0.0248244	0.0153283	0.113644	0.0828908
chr5	179616859	179616958	7002080	0	-	0.444444	(0.42,0.455]	chr5	536250	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPH1	ENSG00000169045.17	ENST00000393432.8:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000329433.10:ENST00000523449.5:ENST00000519033.5:ENST00000521720.5:ENST00000502632.5:ENST00000519958.5:ENST00000523136.1:ENST00000504549.5:ENST00000514731.5:ENST00000521173.5:ENST00000523921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	92	2	1.98156	2.352115	2.72267	0.00232558	1.83552e-5	0.0220596	4.53637e-4
chr8	144412537	144412637	10148832	0	-	0.65	(0.59,1]	chr8	763668	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC39A4	ENSG00000147804.10	ENST00000527148.5:ENST00000529462.5:ENST00000301305.8:ENST00000276833.9:ENST00000532718.5:ENST00000530807.5:ENST00000531013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	57	2	1.85635	2.351915	2.84748	0.0142857	0.0124539	0.0780535	0.0712518
chr8	47953619	47953719	9817367	0	-	0.48	(0.455,0.49]	chr8	742901	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	41	2	1.80405	2.3519	2.89975	0.017721400000000002	3.94125e-4	0.0918323	0.00541075
chr12	54240955	54241055	13342936	0	-	0.36	(0.33,0.36]	chr12	1049602	96	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	12	46	2	2.07836	2.35188	2.6254	0.00180005	0.00106803	0.0174508	0.0124232
chr22	21628252	21628334	18441859	0	-	0.585366	(0.53,0.59]	chr22	1572447	3	UTR3	UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	50	2	2.19975	2.3518749999999997	2.504	0.00293564	0.00279409	0.0261315	0.0241702
chr3	42786094	42786162	4142194	0	-	0.367647	(0.36,0.39]	chr3	346316	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP4-613B23.5:HIGD1A:RP11-70C1.3	ENSG00000280571.2:ENSG00000181061.14:ENSG00000235288.3	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5:ENST00000625589.2:ENST00000452906.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	5	24	2	2.32678	2.3517599999999996	2.37674	0.0193538	0.00529284	0.0943643	0.0390084
chr3	194447851	194447930	4654943	0	-	0.341772	(0.33,0.36]	chr3	384459	1	CDS	CDS:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	1.93784	2.35167	2.7655	0.0278501	0.0175892	0.123353	0.0918323
chr1	206696182	206696269	1464604	0	-	0.482759	(0.455,0.49]	chr1	148042	5	EXON_PSEUDO	EXON_PSEUDO	RP11-343H5.4	ENSG00000224114.1	ENST00000451736.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	37	2	1.94735	2.35161	2.75587	0.00680997	0.00293507	0.0465162	0.025146
chr1	182383714	182383812	1401213	0	-	0.27551	[0,0.29]	chr1	141690	58	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	94	2	2.32027	2.351465	2.38266	8.06233e-5	6.66493e-5	0.00167444	0.0012994
chr7	128770938	128771037	8521866	0	+	0.373737	(0.36,0.39]	chr7	650198	19	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	8	38	2	2.32678	2.35142	2.37606	0.0193538	7.48691e-4	0.0943643	0.00895549
chr18	36807846	36807934	17079218	0	-	0.431818	(0.42,0.455]	chr18	1403245	1	CDS	CDS:UTR3:EXON_MRNA	TPGS2	ENSG00000134779.15	ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5:ENST00000589049.5:ENST00000591823.5:ENST00000585635.5:ENST00000590692.5:ENST00000590337.5:ENST00000587511.1:ENST00000587207.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	1.78888	2.351305	2.91373	0.0259111	0.00892357	0.117079	0.0567495
chr19	7913893	7913990	17218880	0	+	0.42268	(0.42,0.455]	chr19	1417269	16	UTR3	UTR3:EXON_MRNA	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000397983.7	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.78888	2.351305	2.91373	0.0259111	0.00892357	0.117079	0.0567495
chr4	102826595	102826683	5564239	0	-	0.579545	(0.53,0.59]	chr4	444402	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000503742.5:ENST00000321805.11:ENST00000338145.7:ENST00000349311.12:ENST00000357194.10:ENST00000505307.5:ENST00000510129.5:ENST00000502563.5:ENST00000508238.5:ENST00000514755.5:ENST00000508974.5:ENST00000502690.5:ENST00000508818.5:ENST00000503418.5:ENST00000508249.1:ENST00000513098.5:ENST00000503282.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	33	2	2.0693	2.35123	2.63316	0.0160468	0.00474401	0.0860154	0.0361423
chr5	180575289	180575388	6416546	0	+	0.454545	(0.42,0.455]	chr5	499475	12	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.03532	2.351145	2.66697	0.040947	0.0190326	0.163285	0.0958835
chr9	124521519	124521618	10850475	0	-	0.454545	(0.42,0.455]	chr9	821976	44	UTR3	UTR3:EXON_MRNA	NR6A1	ENSG00000148200.17	ENST00000487099.7	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.03532	2.351145	2.66697	0.040947	0.0190326	0.163285	0.0958835
chr8	47840015	47840102	9816169	0	-	0.37931	(0.36,0.39]	chr8	742633	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.81435	2.350985	2.88762	0.0302191	4.35345e-4	0.129773	0.005869
chr19	54180702	54180802	17627728	0	-	0.72	(0.59,1]	chr19	1488028	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000494142.1:ENST00000449249.5:ENST00000391754.5:ENST00000495279.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	47	2	2.03921	2.350975	2.66274	0.0371471	0.00482151	0.151849	0.0365653
chr2	47160676	47160775	2631443	0	-	0.30303	(0.29,0.33]	chr2	236916	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	61	2	2.24851	2.3509	2.45329	9.14793e-4	2.77977e-4	0.0110583	0.00411408
chr6	43539409	43539507	7708248	0	-	0.479592	(0.455,0.49]	chr6	591510	7	EXON_PSEUDO	EXON_PSEUDO:INTRON	XPO5:RP3-337H4.6	ENSG00000124571.18:ENSG00000219470.1	ENST00000265351.12:ENST00000398835.7:ENST00000612911.1:ENST00000402069.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_pseudogene	4	23	2	1.95898	2.350545	2.74211	0.047107	0.00330545	0.172269	0.028478
chr3	194404048	194404146	4654480	0	-	0.265306	[0,0.29]	chr3	384345	15	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	2.08434	2.3503100000000003	2.61628	0.0181581	0.0101434	0.0945306	0.0626311
chr8	123320737	123320836	10056869	0	-	0.232323	[0,0.29]	chr8	756580	10	UTR3	UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	18	2	2.08434	2.3503100000000003	2.61628	0.0181581	0.0101434	0.0945306	0.0626311
chr15	72208799	72208891	15368091	0	-	0.597826	(0.59,1]	chr15	1214149	3	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000568459.5:ENST00000561609.5:ENST00000569857.5:ENST00000563275.1:ENST00000568743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	87	2	2.31902	2.350295	2.38157	0.00534794	0.00219962	0.0392783	0.0210117
chr11	59642957	59643035	12401089	0	-	0.487179	(0.455,0.49]	chr11	959482	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PATL1	ENSG00000166889.14	ENST00000300146.10:ENST00000531919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	2.26324	2.34994	2.43664	0.00868189	0.00394058	0.0558093	0.0315828
chrX	49333346	49333407	18694598	0	+	0.590164	(0.59,1]	chrX	1594852	2	CDS	CDS:EXON_MRNA	GAGE13	ENSG00000274274.1	ENST00000612958.1	protein_coding	protein_coding	protein_coding	protein_coding	7	76	2	2.1563	2.349935	2.54357	0.00708052	0.00276959	0.0478776	0.0240579
chr21	29064967	29065036	18202030	0	-	0.362319	(0.36,0.39]	chr21	1544737	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CCT8	ENSG00000156261.13	ENST00000540844.5:ENST00000470450.5:ENST00000286788.9:ENST00000626972.2:ENST00000431234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	54	2	1.49752	2.34991	3.2023	0.0251844	1.80229e-5	0.117089	4.47567e-4
chr1	2241925	2242024	6715	0	+	0.575758	(0.53,0.59]	chr1	1635	89	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr11	65287777	65287840	11983535	0	+	0.539683	(0.53,0.59]	chr11	920179	2	CDS	CDS:UTR3:EXON_MRNA	POLA2:RP11-867O8.9	ENSG00000014138.9:ENSG00000285816.1	ENST00000527850.5:ENST00000649896.1:ENST00000265465.8:ENST00000527618.5:ENST00000525924.1:ENST00000533192.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr12	48830468	48830568	13321903	0	-	0.59	(0.53,0.59]	chr12	1045076	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX23	ENSG00000174243.10	ENST00000308025.8:ENST00000550834.1	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr3	119503531	119503610	3689848	0	+	0.544304	(0.53,0.59]	chr3	315416	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000486418.5:ENST00000492164.5:ENST00000466984.1:ENST00000463927.6:ENST00000498399.1:ENST00000469324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr9	111414576	111414651	10798710	0	-	0.573333	(0.53,0.59]	chr9	817878	3	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr9	128259316	128259391	10864171	0	-	0.573333	(0.53,0.59]	chr9	823518	3	CDS	CDS:EXON_MRNA:INTRON	GOLGA2	ENSG00000167110.18	ENST00000421699.7:ENST00000611957.4:ENST00000610329.4:ENST00000639983.1:ENST00000462089.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr9	128999623	128999714	10482773	0	+	0.549451	(0.53,0.59]	chr9	791144	1	CDS	CDS:EXON_MRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000487952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chrX	49326752	49326815	18694550	0	+	0.555556	(0.53,0.59]	chrX	1594833	2	CDS	CDS:EXON_MRNA	GAGE12J	ENSG00000224659.2	ENST00000442437.2	protein_coding	protein_coding	protein_coding	protein_coding	2	16	2	2.34461	2.3498599999999996	2.35511	0.0457008	0.0445399	0.172163	0.168044
chr12	54230941	54231032	13342835	0	-	0.406593	(0.39,0.42]	chr12	1049600	1	UTR3	UTR3:EXON_MRNA:PRIMIRNA	MIR3198-2:CBX5	ENSG00000283803.1:ENSG00000094916.16	ENST00000577868.1:ENST00000209875.9	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	6	31	2	2.01677	2.34972	2.68267	0.0235818	0.00125229	0.111323	0.0133064
chr5	126836831	126836925	6202855	0	+	0.457447	(0.455,0.49]	chr5	483234	7	UTR3	UTR3:EXON_MRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	79	2	2.15167	2.34971	2.54775	0.00161198	6.60356e-5	0.0160849	0.0014099
chr2	152656010	152656108	2944039	0	-	0.408163	(0.39,0.42]	chr2	261535	46	UTR3	UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.21029	2.349685	2.48908	0.0101318	0.0100911	0.0626311	0.0625052
chr1	110952242	110952337	1223730	0	-	0.463158	(0.455,0.49]	chr1	119615	11	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000494675.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.12994	2.34966	2.56938	0.0304832	0.00635313	0.130204	0.0449666
chr7	135927154	135927253	9085552	0	-	0.383838	(0.36,0.39]	chr7	693646	5	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	16	72	2	1.51174	2.3495350000000004	3.18733	0.0202768	2.85393e-6	0.098158	9.65561e-5
chr6	31736481	31736572	7662173	0	-	0.714286	(0.59,1]	chr6	585147	3	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	17	172	2	1.80581	2.349465	2.89312	0.00457178	7.07679e-5	0.0349438	0.00149595
chr6	36110140	36110239	7132632	0	+	0.393939	(0.39,0.42]	chr6	549275	18	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.91489	2.349445	2.784	0.0197788	0.00261393	0.0960939	0.0230705
chr17	57684489	57684589	16287097	0	+	0.31	(0.29,0.33]	chr17	1320878	50	UTR3	UTR3:EXON_MRNA	MSI2	ENSG00000153944.12	ENST00000284073.7:ENST00000674964.1:ENST00000675379.1:ENST00000674522.1	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.06067	2.3494	2.63813	0.0384863	0.00803229	0.149227	0.0528968
chrX	72276234	72276334	19107997	0	-	0.32	(0.29,0.33]	chrX	1625650	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPS4X	ENSG00000198034.11	ENST00000316084.10:ENST00000373626.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	16	2	2.06067	2.3494	2.63813	0.0384863	0.00803229	0.149227	0.0528968
chr11	64204053	64204126	11979324	0	+	0.424658	(0.42,0.455]	chr11	918744	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	36	2	1.71996	2.349265	2.97857	0.0542346	2.50668e-4	0.199653	0.00378275
chr1	39561697	39561787	952924	0	-	0.533333	(0.53,0.59]	chr1	100526	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000492468.5:ENST00000482028.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000530186.1:ENST00000421687.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	29	2	1.90953	2.34926	2.78899	0.0517711	0.00245784	0.193577	0.0221765
chr1	19172863	19172939	876682	0	-	0.473684	(0.455,0.49]	chr1	90299	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	33	2	2.00791	2.34922	2.69053	0.0182983	0.00484225	0.0925808	0.0366328
chr5	176507047	176507145	6402678	0	+	0.295918	(0.29,0.33]	chr5	497383	2	UTR3	UTR3:EXON_MRNA	FAF2	ENSG00000113194.13	ENST00000261942.7	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.24226	2.3490849999999996	2.45591	0.0306054	0.00406506	0.130226	0.032143
chr6	38684443	38684514	7689719	0	-	0.323944	(0.29,0.33]	chr6	589591	2	CDS	CDS:EXON_MRNA	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.74949	2.348965	2.94844	0.0162875	0.00217122	0.0866586	0.0208941
chr21	29326916	29327011	18089882	0	+	0.473684	(0.455,0.49]	chr21	1533699	10	CDS	CDS:EXON_MRNA	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.15985	2.348815	2.53778	0.0128965	0.00105636	0.0722356	0.0117237
chr7	2372672	2372733	8096273	0	+	0.47541	(0.455,0.49]	chr7	618904	1	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000360876.9:ENST00000397011.2	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	2.15985	2.348815	2.53778	0.0128965	0.00105636	0.0722356	0.0117237
chr6	31629547	31629646	7115831	0	+	0.646465	(0.59,1]	chr6	545858	1	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000483470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	77	2	1.49472	2.34855	3.20238	0.0371034	4.79306e-4	0.151849	0.00629006
chr6	33290745	33290845	7121656	0	+	0.65	(0.59,1]	chr6	547535	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	PFDN6:MIR6834	ENSG00000204220.12:ENSG00000284064.1	ENST00000395131.5:ENST00000395134.3:ENST00000374607.5:ENST00000374610.6:ENST00000374606.10:ENST00000491382.1:ENST00000622807.1:ENST00000463584.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	6	69	2	1.99004	2.34836	2.70668	0.0214639	0.0014458	0.102904	0.0155288
chr9	135953679	135953753	10887652	0	-	0.418919	(0.39,0.42]	chr9	826863	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1:ENST00000486258.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	2.11399	2.3481449999999997	2.5823	0.014455	0.00246531	0.0787564	0.0230262
chr17	43014702	43014799	16550638	0	-	0.536082	(0.53,0.59]	chr17	1357992	2	UTR3	UTR3:EXON_MRNA	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	40	2	2.0693	2.3479900000000002	2.62668	0.0160468	0.00157636	0.0860154	0.015761
chr16	9103273	9103372	15534163	0	+	0.373737	(0.36,0.39]	chr16	1230410	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.85489	2.34789	2.84089	0.0350721	0.0128123	0.141601	0.0719798
chr2	106697714	106697810	2825357	0	-	0.489583	(0.455,0.49]	chr2	252231	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	40	2	2.16841	2.347875	2.52734	0.00792433	0.00221684	0.0523592	0.0205155
chr1	55057422	55057514	203780	0	+	0.619565	(0.59,1]	chr1	26152	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	333	2	1.6051	2.34766	3.09022	0.00639018	1.65838e-6	0.0449467	6.10767e-5
chr7	92612361	92612460	8924963	0	-	0.40404	(0.39,0.42]	chr7	681136	76	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	11	50	2	2.3075	2.3475799999999998	2.38766	0.00129243	0.00119001	0.0141493	0.0128045
chr15	68787769	68787844	15359946	0	-	0.373333	(0.36,0.39]	chr15	1213230	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000483551.6:ENST00000560303.1:ENST00000561430.5:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	34	2	2.05973	2.34747	2.63521	0.00633242	0.0039268	0.0446708	0.031494
chr1	225866573	225866627	1530764	0	-	0.5	(0.49,0.53]	chr1	153094	1	CDS	CDS:UTR5:EXON_MRNA	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000537914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.69633	2.34741	2.99849	0.0531914	0.00630123	0.184818	0.0445415
chr11	47166759	47166822	12385349	0	-	0.52381	(0.49,0.53]	chr11	956436	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARFGAP2	ENSG00000149182.15	ENST00000426335.6:ENST00000627920.2:ENST00000524782.6:ENST00000395449.7:ENST00000533243.5:ENST00000527776.5:ENST00000526342.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	22	2	1.69633	2.34741	2.99849	0.0531914	0.00630123	0.184818	0.0445415
chr12	53033805	53033881	12884573	0	+	0.5	(0.49,0.53]	chr12	1001783	1	CDS	CDS:UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	1.69633	2.34741	2.99849	0.0531914	0.00630123	0.184818	0.0445415
chr13	81690975	81691072	13802217	0	+	0.309278	(0.29,0.33]	chr13	1085685	12	EXON_LNCRNA	EXON_LNCRNA	PTMAP5	ENSG00000214182.5	ENST00000607242.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	9	34	2	1.99395	2.3474	2.70085	0.0131526	4.87372e-4	0.0733631	0.00638318
chr6	27132315	27132369	7648713	0	-	0.481481	(0.455,0.49]	chr6	582715	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1:ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	8	40	2	1.86152	2.347175	2.83283	0.0133542	6.06795e-4	0.0743429	0.00817698
chr20	36049741	36049839	17956039	0	-	0.295918	(0.29,0.33]	chr20	1521358	43	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	21	71	2	2.20523	2.34712	2.48901	4.85282e-4	1.0358e-4	0.00681794	0.0018571
chr9	133362216	133362312	10880433	0	-	0.552083	(0.53,0.59]	chr9	825839	9	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8	protein_coding	protein_coding	protein_coding	protein_coding	11	68	2	2.2614899999999998	2.3471	2.43271	0.00132759	9.01417e-4	0.0139137	0.0109447
chr14	90766805	90766897	14456147	0	+	0.521739	(0.49,0.53]	chr14	1128657	4	EXON_PSEUDO	EXON_PSEUDO	CTD-3035D6.1	ENSG00000213315.5	ENST00000472287.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	22	2	1.9035	2.34656	2.78962	0.0295204	0.0129044	0.129773	0.0725185
chr21	44806606	44806705	18277276	0	-	0.424242	(0.42,0.455]	chr21	1550219	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	69	2	2.11744	2.34649	2.57554	0.00497755	8.0708e-5	0.0381953	0.00152731
chr2	47161838	47161858	2631458	0	-	0.4	(0.39,0.42]	chr2	236924	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5:ENST00000484408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.99911	2.346425	2.69374	0.0477207	0.00386013	0.17993	0.0310764
chr6	85622618	85622687	7825880	0	-	0.405797	(0.39,0.42]	chr6	599580	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.99911	2.346425	2.69374	0.0477207	0.00386013	0.17993	0.0310764
chr8	4788005	4788102	9177804	0	+	0.391753	(0.39,0.42]	chr8	700904	8	EXON_PSEUDO	EXON_PSEUDO	PAICSP4	ENSG00000254244.1	ENST00000517543.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	33	2	2.22707	2.3464	2.46573	0.00574688	0.00349672	0.0426551	0.0288123
chr1	161100621	161100682	1332380	0	-	0.393443	(0.39,0.42]	chr1	136646	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PFDN2	ENSG00000143256.5	ENST00000468311.1:ENST00000368010.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	1.98676	2.346335	2.70591	0.0439902	0.0185716	0.163596	0.0932453
chr21	45494861	45494915	18145762	0	+	0.648148	(0.59,1]	chr21	1539803	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000459895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	58	2	2.11074	2.3460599999999996	2.58138	0.0305	0.00235862	0.130204	0.0215532
chr14	102005138	102005236	14495377	0	+	0.55102	(0.53,0.59]	chr14	1133063	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000645114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	1.96733	2.346055	2.72478	0.022694	0.00324675	0.105117	0.0282494
chr7	152177626	152177722	9135336	0	-	0.552083	(0.53,0.59]	chr7	698399	16	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	33	2	2.22207	2.346035	2.47	0.00910511	0.0089333	0.0576716	0.0567495
chr6	34240880	34240915	7124299	0	+	0.685714	(0.59,1]	chr6	548243	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:PRIMIRNA:INTRON	HMGA1:MIR6835	ENSG00000137309.20:ENSG00000276404.1	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000478214.1:ENST00000374116.3:ENST00000621552.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	9	68	2	1.40346	2.3460349999999996	3.28861	0.0346008	0.0028753	0.141505	0.0256141
chr17	8382142	8382210	16432859	0	-	0.470588	(0.455,0.49]	chr17	1340565	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-849F2.7:RPL26	ENSG00000263809.1:ENSG00000161970.15	ENST00000582471.1:ENST00000648839.1:ENST00000584164.6:ENST00000584906.6:ENST00000583011.6:ENST00000582485.5:ENST00000582556.5:ENST00000585176.1:ENST00000584343.6:ENST00000578812.5:ENST00000583515.1:ENST00000578115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	118	2	2.11622	2.345955	2.57569	2.74446e-4	3.69278e-5	0.00406677	8.89337e-4
chr6	17629145	17629244	7619014	0	-	0.383838	(0.36,0.39]	chr6	580534	6	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.66836	2.345755	3.02315	0.0474647	8.65481e-4	0.17993	0.0100741
chr1	2395790	2395871	7533	0	+	0.493827	(0.49,0.53]	chr1	1692	1	CDS_START	CDS_START:CDS:EXON_MRNA	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000493207.1:ENST00000378512.5:ENST00000443438.5:ENST00000488353.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.3044	2.3456149999999996	2.38683	0.0509448	0.012654	0.181793	0.0718207
chr1	113975096	113975195	418226	0	+	0.414141	(0.39,0.42]	chr1	41199	17	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	1.74181	2.34549	2.94917	0.0245629	0.00121791	0.114841	0.0130188
chr12	54292745	54292836	13343347	0	-	0.527473	(0.49,0.53]	chr12	1049646	4	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.30147	2.34541	2.38935	0.00488689	0.0033367	0.0376157	0.0278556
chr2	44321355	44321445	2624149	0	-	0.388889	(0.36,0.39]	chr2	236321	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000444696.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	2.05966	2.345405	2.63115	0.0366015	0.0245975	0.145024	0.114841
chr2	61490641	61490708	2690478	0	-	0.38806	(0.36,0.39]	chr2	240357	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	2.05966	2.345405	2.63115	0.0366015	0.0245975	0.145024	0.114841
chr2	195680042	195680142	2290365	0	+	0.38	(0.36,0.39]	chr2	207583	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC39A10	ENSG00000196950.14	ENST00000458054.1:ENST00000409086.7:ENST00000444421.5:ENST00000430412.5:ENST00000412905.1:ENST00000359634.10:ENST00000418005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	2.05966	2.345405	2.63115	0.0366015	0.0245975	0.145024	0.114841
chr16	9107731	9107830	15534208	0	+	0.494949	(0.49,0.53]	chr16	1230410	46	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C16orf72:RP11-473I1.9	ENSG00000182831.12:ENSG00000263244.2	ENST00000327827.12:ENST00000574285.2:ENST00000574616.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	35	2	2.26641	2.3453600000000003	2.42431	0.0190546	0.0018555	0.093872	0.0178545
chr13	25326915	25326974	13647818	0	+	0.457627	(0.455,0.49]	chr13	1075896	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000381747.7:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	2.18128	2.34516	2.50904	0.0310515	0.0111696	0.131262	0.0665375
chr19	1241745	1241797	17192012	0	+	0.788462	(0.59,1]	chr19	1411822	1	UTR5	UTR5:EXON_MRNA	ATP5F1D	ENSG00000099624.8	ENST00000395633.5:ENST00000215375.7:ENST00000592624.1:ENST00000590265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	46	2	2.32384	2.344885	2.36593	0.0157639	0.0141097	0.0851539	0.077233
chr1	162566068	162566168	507607	0	+	0.44	(0.42,0.455]	chr1	54774	1	CDS_START	CDS_START:CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	12	58	2	2.07515	2.34485	2.61455	0.00239083	3.62473e-4	0.0217482	0.00545349
chr6	35575247	35575344	7676294	0	-	0.515464	(0.49,0.53]	chr6	588423	18	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.30264	2.344735	2.38683	0.0165402	0.012654	0.087611	0.0718207
chrX	53533214	53533308	19077146	0	-	0.446809	(0.42,0.455]	chrX	1622623	13	UTR3	UTR3:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.32656	2.3445150000000003	2.36247	0.0462889	0.00298867	0.176878	0.0255712
chr2	28776882	28776982	1702656	0	+	0.44	(0.42,0.455]	chr2	166994	1	CDS_START	CDS_START:CDS:EXON_MRNA	PPP1CB	ENSG00000213639.10	ENST00000455580.5:ENST00000420282.5:ENST00000441461.5:ENST00000427786.1:ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000464273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	2.32646	2.344465	2.36247	0.0462889	0.00624136	0.176878	0.0443844
chr16	57252858	57252955	15683880	0	+	0.340206	(0.33,0.36]	chr16	1247542	6	UTR3	UTR3:EXON_MRNA	ARL2BP	ENSG00000102931.8	ENST00000219204.8:ENST00000563234.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.16995	2.34441	2.51887	0.0358636	0.0124739	0.147298	0.0713206
chr12	45923008	45923081	13312648	0	-	0.452055	(0.42,0.455]	chr12	1043367	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000550629.1:ENST00000547654.5:ENST00000465950.5:ENST00000549162.5:ENST00000550893.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.32629	2.34438	2.36247	0.0462889	0.0153564	0.176878	0.0832114
chr1	27406208	27406307	908765	0	-	0.565657	(0.53,0.59]	chr1	95011	21	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.90953	2.34437	2.77921	0.0517711	0.0132865	0.193577	0.0740932
chr11	47422573	47422647	12386589	0	-	0.554054	(0.53,0.59]	chr11	956857	1	CDS	CDS:UTR3:EXON_MRNA	PSMC3	ENSG00000165916.9	ENST00000619920.4:ENST00000602866.5:ENST00000298852.8:ENST00000530912.5:ENST00000524447.6:ENST00000531051.6:ENST00000530651.5:ENST00000530887.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	1.90953	2.34437	2.77921	0.0517711	0.0132865	0.193577	0.0740932
chr11	57803712	57803804	11953096	0	+	0.543478	(0.53,0.59]	chr11	914830	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000527599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	21	2	1.90953	2.34437	2.77921	0.0517711	0.0132865	0.193577	0.0740932
chr17	44854268	44854356	16559942	0	-	0.545455	(0.53,0.59]	chr17	1359704	1	CDS	CDS:EXON_MRNA	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000590977.5:ENST00000590124.5:ENST00000402521.7:ENST00000589769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	21	2	1.90953	2.34437	2.77921	0.0517711	0.0132865	0.193577	0.0740932
chr6	131658322	131658420	7402884	0	+	0.336735	(0.33,0.36]	chr6	567377	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	2.17058	2.344275	2.51797	0.0303594	0.01664	0.130016	0.0878065
chr1	43704465	43704561	166697	0	+	0.4375	(0.42,0.455]	chr1	21511	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-7O11.7:KDM4A	ENSG00000284989.1:ENSG00000066135.13	ENST00000645057.1:ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr12	46187098	46187196	13313419	0	-	0.428571	(0.42,0.455]	chr12	1043464	42	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr12	54499354	54499402	12893645	0	+	0.4375	(0.42,0.455]	chr12	1003086	1	CDS	CDS:UTR5:EXON_MRNA	NCKAP1L	ENSG00000123338.13	ENST00000293373.11:ENST00000548221.5:ENST00000547500.1:ENST00000545638.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr14	23062415	23062469	14529030	0	-	0.425926	(0.42,0.455]	chr14	1138480	1	CDS	CDS:UTR3:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555478.5:ENST00000555395.1:ENST00000554680.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr15	41481182	41481282	14887016	0	+	0.45	(0.42,0.455]	chr15	1169493	6	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.14	ENST00000389629.8	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr16	81652202	81652286	15771481	0	+	0.440476	(0.42,0.455]	chr16	1255492	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr16	90137916	90137993	15813847	0	+	0.441558	(0.42,0.455]	chr16	1259660	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	FAM157C	ENSG00000260528.5	ENST00000563357.1:ENST00000568070.1	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr17	20903966	20904063	16164187	0	+	0.443299	(0.42,0.455]	chr17	1303948	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC144NL-AS1	ENSG00000233098.9	ENST00000577537.5:ENST00000439794.6:ENST00000417232.6:ENST00000443508.7:ENST00000583962.2:ENST00000577860.5	lncRNA	lncRNA	lncRNA	lncRNA	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr2	126557980	126558071	2864148	0	-	0.428571	(0.42,0.455]	chr2	255780	7	EXON_PSEUDO	EXON_PSEUDO	YWHAZP2	ENSG00000213236.3	ENST00000440317.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr5	43704304	43704404	5960964	0	+	0.45	(0.42,0.455]	chr5	467152	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1:ENST00000503059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr5	72875675	72875737	6029038	0	+	0.435484	(0.42,0.455]	chr5	472717	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000520850.5:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6:ENST00000508762.5:ENST00000505082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr5	134924383	134924470	6232561	0	+	0.448276	(0.42,0.455]	chr5	485526	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCBD2:MTND6P4	ENSG00000132570.15:ENSG00000249119.1	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1:ENST00000506002.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	2	13	2	2.3259	2.344185	2.36247	0.0484606	0.0462889	0.176878	0.175495
chr10	74109063	74109156	11117552	0	+	0.548387	(0.53,0.59]	chr10	846287	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	21	2	1.89806	2.3439300000000003	2.7898	0.0532477	0.0128364	0.184818	0.0719798
chr11	113790195	113790291	12146796	0	+	0.5625	(0.53,0.59]	chr11	935577	11	EXON_LNCRNA	EXON_LNCRNA	ATF4P4	ENSG00000256167.1	ENST00000393544.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	3	21	2	1.89806	2.3439300000000003	2.7898	0.0532477	0.0128364	0.184818	0.0719798
chrX	55222683	55222746	18705527	0	+	0.539683	(0.53,0.59]	chrX	1596392	2	CDS	CDS:EXON_MRNA	PAGE5	ENSG00000158639.13	ENST00000374955.8:ENST00000289619.9:ENST00000374952.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	1.89806	2.3439300000000003	2.7898	0.0532477	0.0128364	0.184818	0.0719798
chr1	52383829	52383883	1018799	0	-	0.574074	(0.53,0.59]	chr1	105590	1	CDS	CDS:EXON_MRNA	ORC1	ENSG00000085840.13	ENST00000371568.8:ENST00000371566.1	protein_coding	protein_coding	protein_coding	protein_coding	3	21	2	2.0289	2.34392	2.65894	0.0373899	0.0193255	0.146698	0.0943643
chr17	7581377	7581411	16105732	0	+	0.588235	(0.53,0.59]	chr17	1296999	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-186B7.4:CD68	ENSG00000264772.6:ENSG00000129226.14	ENST00000581621.1:ENST00000380498.10:ENST00000250092.11:ENST00000584180.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	21	2	2.0289	2.34392	2.65894	0.0373899	0.0193255	0.146698	0.0943643
chr14	23034781	23034881	14528853	0	-	0.61	(0.59,1]	chr14	1138398	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	PSMB5	ENSG00000100804.19	ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	56	2	2.30623	2.3438999999999997	2.38157	0.0170607	0.00534794	0.0896731	0.0392783
chr17	75039208	75039271	16682035	0	-	0.444444	(0.42,0.455]	chr17	1372881	1	CDS	CDS:UTR3:EXON_MRNA	ATP5PD	ENSG00000167863.12	ENST00000344546.8:ENST00000301587.9:ENST00000580649.1:ENST00000538432.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	42	2	2.07164	2.3438600000000003	2.61608	0.0101168	6.89843e-4	0.0626311	0.00842607
chr6	34237139	34237228	7124258	0	+	0.719101	(0.59,1]	chr6	548229	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	269	2	1.69143	2.34376	2.99609	0.00361286	1.30644e-5	0.030409	3.43346e-4
chr7	128863004	128863062	8522581	0	+	0.465517	(0.455,0.49]	chr7	650488	1	CDS	CDS:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	10	42	2	1.42128	2.3437550000000003	3.26623	0.0337086	2.31662e-4	0.141277	0.00354314
chr20	5115199	5115282	17887785	0	-	0.325301	(0.29,0.33]	chr20	1514074	4	UTR3	UTR3:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	2.14085	2.3436399999999997	2.54643	0.0117968	0.0026976	0.0686664	0.0236059
chr16	18792360	18792459	15877069	0	-	0.353535	(0.33,0.36]	chr16	1269296	8	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	13	55	2	1.53987	2.343605	3.14734	0.0280138	9.55613e-6	0.126417	2.65824e-4
chr1	154268855	154268954	480139	0	+	0.59596	(0.59,1]	chr1	49736	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000428595.1:ENST00000493867.1:ENST00000484819.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	98	2	2.1563	2.343385	2.53047	0.00708052	7.54387e-4	0.0478776	0.0090193
chr6	53269016	53269112	7740172	0	-	0.458333	(0.455,0.49]	chr6	594337	18	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	1.68956	2.343265	2.99697	0.0381365	9.57891e-4	0.155455	0.0107247
chrX	154359731	154359818	19278089	0	-	0.586207	(0.53,0.59]	chrX	1638312	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	58	2	2.23406	2.34274	2.45142	0.00870728	4.64724e-4	0.0558165	0.00615823
chr1	43996964	43997061	969340	0	-	0.494845	(0.49,0.53]	chr1	102243	6	UTR3	UTR3:EXON_MRNA:INTRON	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr21	33421510	33421610	18100498	0	+	0.5	(0.49,0.53]	chr21	1534478	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	IFNGR2	ENSG00000159128.15	ENST00000290219.11:ENST00000439213.5:ENST00000381995.5:ENST00000545369.2:ENST00000405436.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr3	49099181	49099253	4172442	0	-	0.513889	(0.49,0.53]	chr3	350347	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000637543.1:ENST00000637908.1:ENST00000634432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr4	7774675	7774774	4712705	0	+	0.494949	(0.49,0.53]	chr4	390956	26	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2	lncRNA	lncRNA	lncRNA	lncRNA	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr5	129974890	129974945	6217761	0	+	0.490909	(0.49,0.53]	chr5	483986	1	EXON_SMALL	EXON_SMALL:INTRON	CHSY3:RNU6ATAC10P	ENSG00000198108.4:ENSG00000221562.1	ENST00000305031.5:ENST00000507545.1:ENST00000408635.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:processed_transcript	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr8	9580196	9580296	9190919	0	+	0.5	(0.49,0.53]	chr8	702162	1	CDS_START	CDS_START:CDS:EXON_MRNA	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5	protein_coding	protein_coding	protein_coding	protein_coding	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr9	122378846	122378918	10452631	0	+	0.513889	(0.49,0.53]	chr9	787058	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTGS1	ENSG00000095303.17	ENST00000643810.1:ENST00000540753.6:ENST00000645132.1:ENST00000362012.7:ENST00000647067.1:ENST00000619306.5:ENST00000426608.6:ENST00000223423.8:ENST00000643576.1:ENST00000373698.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chrX	124073387	124073484	18852300	0	+	0.494845	(0.49,0.53]	chrX	1606275	17	INTRON	INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	14	2	2.3044	2.342685	2.38097	0.0509448	0.0425419	0.181793	0.167547
chr1	67686507	67686587	265211	0	+	0.75	(0.59,1]	chr1	29640	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000460575.1:ENST00000617962.2:ENST00000484245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	56	2	1.79051	2.342625	2.89474	0.0396851	0.00190546	0.161349	0.018313
chr1	155295115	155295208	1307587	0	-	0.602151	(0.59,1]	chr1	132217	1	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7:ENST00000434082.3	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.25872	2.342555	2.42639	0.0409084	0.0193473	0.163285	0.0969537
chr11	61967077	61967166	12406756	0	-	0.629214	(0.59,1]	chr11	960806	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000532601.1:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	35	2	2.25872	2.342555	2.42639	0.0409084	0.0193473	0.163285	0.0969537
chr12	56663626	56663720	13352201	0	-	0.329787	(0.29,0.33]	chr12	1051779	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	46	153	2	2.04487	2.342555	2.64024	1.75401e-4	2.28228e-6	0.00306633	8.03317e-5
chr21	45530769	45530836	18279217	0	-	0.641791	(0.59,1]	chr21	1550607	1	CDS	CDS:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5:ENST00000567670.5:ENST00000311124.9:ENST00000650808.1:ENST00000380010.8:ENST00000485649.3	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.25872	2.342555	2.42639	0.0409084	0.0193473	0.163285	0.0969537
chr19	15835756	15835851	17246594	0	+	0.484211	(0.455,0.49]	chr19	1422765	11	EXON_LNCRNA	EXON_LNCRNA	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000655708.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1	lncRNA	lncRNA	lncRNA	lncRNA	5	25	2	1.99447	2.3425	2.69053	0.0182983	0.012436	0.0925808	0.0712518
chr2	151475169	151475268	2134936	0	+	0.282828	[0,0.29]	chr2	197868	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	2.28104	2.342495	2.40395	0.0210081	0.0202028	0.101116	0.0984041
chrX	16844637	16844736	18971678	0	-	0.282828	[0,0.29]	chrX	1615428	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	15	2	2.28104	2.342495	2.40395	0.0210081	0.0202028	0.101116	0.0984041
chr6	38676119	38676217	7689631	0	-	0.326531	(0.29,0.33]	chr6	589572	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	42	2	2.07096	2.34192	2.61288	0.00195265	0.00138819	0.0186112	0.0149724
chr1	109592344	109592443	399339	0	+	0.515152	(0.49,0.53]	chr1	38901	1	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.30264	2.341805	2.38097	0.0425419	0.0165402	0.167547	0.087611
chr20	5604740	5604840	17889637	0	-	0.52	(0.49,0.53]	chr20	1514370	3	SS3_PROX	SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	2.30264	2.341805	2.38097	0.0425419	0.0165402	0.167547	0.087611
chr6	33697553	33697652	7669946	0	-	0.515152	(0.49,0.53]	chr6	587746	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	UQCC2	ENSG00000137288.10	ENST00000606961.1:ENST00000374231.8:ENST00000607484.6:ENST00000374214.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.30264	2.341805	2.38097	0.0425419	0.0165402	0.167547	0.087611
chr17	45104911	45105011	16237762	0	+	0.52	(0.49,0.53]	chr17	1315027	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NMT1	ENSG00000136448.13	ENST00000678938.1:ENST00000592782.5:ENST00000676828.1:ENST00000587014.2:ENST00000591931.2:ENST00000678606.1:ENST00000677949.1:ENST00000587670.2:ENST00000258960.7:ENST00000678576.1:ENST00000676753.1:ENST00000678332.1:ENST00000590114.6:ENST00000592654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	25	2	1.56467	2.3417950000000003	3.11892	0.051923	0.00398244	0.18423900000000001	0.0322851
chr2	157258859	157258955	2152112	0	+	0.375	(0.36,0.39]	chr2	198573	8	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.85874	2.341775	2.82481	0.0415243	6.14057e-4	0.164804	0.00765639
chr20	29575059	29575115	17747420	0	+	0.428571	(0.42,0.455]	chr20	1497679	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000283592.1	ENST00000638104.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	7	37	2	1.87159	2.34175	2.81191	0.0214479	6.31824e-4	0.102998	0.0078507
chr9	131174230	131174318	10496118	0	+	0.511364	(0.49,0.53]	chr9	793300	3	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	115	2	1.7928	2.34174	2.89068	0.00268202	5.09713e-6	0.0242082	1.5765e-4
chr1	25901490	25901586	905282	0	-	0.447917	(0.42,0.455]	chr1	94151	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000485226.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	192	2	1.44776	2.341655	3.23555	0.00784006	2.80445e-8	0.0520241	1.87905e-6
chr8	140523851	140523951	10132081	0	-	0.44	(0.42,0.455]	chr8	760954	38	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.87159	2.3414800000000002	2.81137	0.0214479	0.0120386	0.102998	0.0700876
chrX	48923173	48923273	19063681	0	-	0.5	(0.49,0.53]	chrX	1620617	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	OTUD5	ENSG00000068308.14	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000610466.4:ENST00000428668.2	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.30189	2.34143	2.38097	0.0425419	0.00685554	0.167547	0.0471063
chr6	26545963	26546060	7102832	0	+	0.443299	(0.42,0.455]	chr6	543213	6	UTR3	UTR3:EXON_MRNA	HMGN4	ENSG00000182952.5	ENST00000377575.3	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.93033	2.341315	2.7523	0.0505055	0.0153283	0.181202	0.0828908
chr21	45278102	45278169	18278528	0	-	0.492537	(0.49,0.53]	chr21	1550478	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POFUT2	ENSG00000186866.17	ENST00000331343.11:ENST00000334538.13:ENST00000471540.5:ENST00000612472.4:ENST00000349485.10:ENST00000451615.1:ENST00000493524.5:ENST00000468360.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	2.30147	2.34122	2.38097	0.0425419	0.0033367	0.167547	0.0278556
chr20	38951538	38951636	17787105	0	+	0.418367	(0.39,0.42]	chr20	1503189	1	CDS	CDS:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.87119	2.341125	2.81106	0.0373134	6.4431e-4	0.152293	0.00799617
chr2	74462045	74462140	2742888	0	-	0.631579	(0.59,1]	chr2	244411	8	CDS	CDS:UTR3:EXON_MRNA	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	46	2	2.17889	2.341055	2.50322	0.025085	0.00863444	0.116848	0.0556009
chr10	69401322	69401415	11096853	0	+	0.537634	(0.53,0.59]	chr10	843823	3	UTR3	UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	82	2	1.85914	2.340855	2.82257	0.0128779	2.50989e-5	0.0721992	5.82876e-4
chr19	49490503	49490576	17370748	0	+	0.671233	(0.59,1]	chr19	1443121	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1:ENST00000474171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	84	859	2	2.17058	2.34082	2.51106	1.29794e-4	1.06137e-5	0.00242629	2.90425e-4
chr3	47124108	47124206	4159646	0	-	0.479592	(0.455,0.49]	chr3	347925	40	CDS	CDS:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000409792.4:ENST00000330022.11:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	63	2	2.13874	2.340585	2.54243	0.00121538	5.34358e-4	0.0130089	0.00743689
chr19	9828337	9828393	17223488	0	+	0.5	(0.49,0.53]	chr19	1418089	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBL5	ENSG00000198258.11	ENST00000358666.7:ENST00000590068.1:ENST00000589960.5:ENST00000593087.1:ENST00000586895.6:ENST00000588141.1:ENST00000588595.5:ENST00000589372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	44	2	2.16719	2.34043	2.51367	0.00606444	0.00120983	0.0432957	0.0135286
chr1	202335654	202335754	1450379	0	-	0.51	(0.49,0.53]	chr1	145702	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1:ENST00000460852.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	24	2	2.18239	2.34018	2.49797	0.024394	0.00843736	0.111797	0.0546021
chr16	34268262	34268359	15924771	0	-	0.505155	(0.49,0.53]	chr16	1276975	24	EXON_PSEUDO	EXON_PSEUDO	BCLAF1P2	ENSG00000279800.2	ENST00000624956.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	24	2	2.18239	2.34018	2.49797	0.024394	0.00843736	0.111797	0.0546021
chr22	40330920	40331020	18376198	0	+	0.53	(0.49,0.53]	chr22	1563732	78	UTR3	UTR3:EXON_MRNA	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000454349.7:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.18239	2.34018	2.49797	0.024394	0.00843736	0.111797	0.0546021
chr1	171537332	171537402	537061	0	+	0.5	(0.49,0.53]	chr1	57638	2	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding	8	43	2	2.13458	2.3400800000000004	2.54558	0.00409201	0.0024326	0.0322679	0.0228485
chr7	135977100	135977186	9086055	0	-	0.732558	(0.59,1]	chr7	693666	1	UTR5	UTR5:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	16	173	2	2.12266	2.33986	2.55706	0.00351888	1.05717e-4	0.0298102	0.00189161
chr1	52086856	52086955	192279	0	+	0.282828	[0,0.29]	chr1	24661	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BTF3L4	ENSG00000134717.18	ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	20	2	2.0001	2.339815	2.67953	0.0227161	0.0046416	0.107633	0.0354333
chr1	100082403	100082501	376764	0	+	0.244898	[0,0.29]	chr1	36525	3	UTR3	UTR3:EXON_MRNA	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	20	2	2.0001	2.339815	2.67953	0.0227161	0.0046416	0.107633	0.0354333
chr2	113916936	113917008	2006703	0	+	0.361111	(0.36,0.39]	chr2	190750	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ACTR3	ENSG00000115091.12	ENST00000443297.5:ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	2.19	2.33961	2.48922	0.0111937	0.0110399	0.0665375	0.0652374
chr19	55668669	55668730	17397295	0	+	0.557377	(0.53,0.59]	chr19	1448925	1	CDS	CDS:UTR3:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	1.65775	2.3391450000000003	3.02054	0.0573191	0.00577011	0.196623	0.0426551
chr7	72940816	72940904	8330181	0	+	0.568182	(0.53,0.59]	chr7	634048	1	CDS	CDS:EXON_MRNA	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.65775	2.3391450000000003	3.02054	0.0573191	0.00577011	0.196623	0.0426551
chrX	53683971	53684070	19078776	0	-	0.666667	(0.59,1]	chrX	1623073	2	UTR5	UTR5:EXON_MRNA:INTRON	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000218328.12:ENST00000446750.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	35	2	2.17889	2.3391450000000003	2.4994	0.0333573	0.025085	0.137922	0.116848
chr1	32326938	32327007	128459	0	+	0.536232	(0.53,0.59]	chr1	15923	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000481281.5:ENST00000463172.5:ENST00000428704.1:ENST00000472928.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	25	2	1.76849	2.3391349999999997	2.90978	0.0420665	0.00857883	0.158792	0.0552386
chr1	155319860	155319928	483674	0	+	0.544118	(0.53,0.59]	chr1	50798	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000447866.5:ENST00000368356.9:ENST00000467076.5:ENST00000356657.10:ENST00000612683.1:ENST00000492887.5:ENST00000492244.5:ENST00000490140.1:ENST00000489324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	25	2	1.76849	2.3391349999999997	2.90978	0.0420665	0.00857883	0.158792	0.0552386
chr20	38952617	38952715	17787116	0	+	0.316327	(0.29,0.33]	chr20	1503191	2	UTR3	UTR3:EXON_MRNA	FAM83D	ENSG00000101447.15	ENST00000619304.4:ENST00000619850.2	protein_coding	protein_coding	protein_coding	protein_coding	13	45	2	2.32825	2.33901	2.34977	0.00115302	9.41664e-4	0.0130851	0.010642
chr16	15866578	15866674	15867191	0	-	0.510417	(0.49,0.53]	chr16	1268253	10	UTR3	UTR3:EXON_MRNA	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5	protein_coding	protein_coding	protein_coding	protein_coding	7	36	2	1.80533	2.3390050000000002	2.87268	0.0163404	0.00175078	0.0867615	0.0180053
chr3	160402732	160402832	3852777	0	+	0.31	(0.29,0.33]	chr3	327381	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SMC4	ENSG00000113810.16	ENST00000497311.5:ENST00000465903.5:ENST00000485645.5:ENST00000472282.5:ENST00000472991.5:ENST00000357388.8:ENST00000469762.5:ENST00000468653.5:ENST00000467468.5:ENST00000469858.5:ENST00000489573.5:ENST00000462787.5:ENST00000485867.5:ENST00000490207.5:ENST00000344722.5:ENST00000470240.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	26	2	2.18913	2.3389949999999997	2.48886	0.00629431	0.0055888	0.044701	0.0419759
chr5	168552583	168552682	6968943	0	-	0.474747	(0.455,0.49]	chr5	532791	42	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	PANK3:SLC2A3P1	ENSG00000120137.7:ENSG00000253861.1	ENST00000239231.7:ENST00000519666.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	6	31	2	2.15064	2.33899	2.52734	0.00792433	0.00661084	0.0523592	0.046082
chr11	2972190	2972279	12233686	0	-	0.325843	(0.29,0.33]	chr11	944911	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.17855	2.338955	2.49936	0.0183673	0.00917022	0.0928041	0.0580029
chr6	113959980	113960039	7903138	0	-	0.322034	(0.29,0.33]	chr6	605443	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000425835.6:ENST00000523628.5:ENST00000521610.5:ENST00000522371.5:ENST00000521163.5:ENST00000518690.5:ENST00000523240.5:ENST00000521233.1:ENST00000520895.5:ENST00000524334.1:ENST00000520170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	19	2	2.17855	2.338955	2.49936	0.0183673	0.00917022	0.0928041	0.0580029
chr4	70913242	70913342	4878219	0	+	0.34	(0.33,0.36]	chr4	401866	103	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	36	2	1.5354	2.338835	3.14227	0.0272526	1.5366e-4	0.120857	0.00279114
chr15	41299439	41299538	14885415	0	+	0.343434	(0.33,0.36]	chr15	1169280	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	11	39	2	1.70162	2.33877	2.97592	0.0112523	4.1482e-4	0.0665375	0.00607555
chr1	44754749	44754845	173930	0	+	0.395833	(0.39,0.42]	chr1	22344	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	52	2	1.66154	2.33873	3.01592	0.0452475	2.42918e-5	0.174743	5.69937e-4
chr1	40292569	40292669	153228	0	+	0.43	(0.42,0.455]	chr1	19196	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ZMPSTE24	ENSG00000084073.10	ENST00000675937.1:ENST00000674703.1:ENST00000372759.4:ENST00000675754.1:ENST00000474142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	27	2	1.86513	2.33844	2.81175	0.0357107	0.00227654	0.147298	0.0209546
chr21	8437936	8438035	18041923	0	+	0.606061	(0.59,1]	chr21	1530900	49	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	9840	100059	2	2.18388	2.338415	2.49295	3.11336e-5	4.97285e-6	6.96814e-4	1.69971e-4
chr1	93160128	93160226	1171270	0	-	0.377551	(0.36,0.39]	chr1	115397	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000483033.1:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	27	2	2.29974	2.33824	2.37674	0.00926291	0.00529284	0.0586162	0.0390084
chr3	155936337	155936423	3824645	0	+	0.476744	(0.455,0.49]	chr3	326231	1	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	8	49	2	1.79605	2.338095	2.88014	0.0427708	6.16382e-5	0.168094	0.0012284
chr1	222734798	222734898	724630	0	+	0.33	(0.29,0.33]	chr1	73180	22	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.22218	2.337955	2.45373	0.023782	0.0156405	0.109413	0.084273700000000007
chr17	14207408	14207506	16134790	0	+	0.408163	(0.39,0.42]	chr17	1300108	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COX10	ENSG00000006695.12	ENST00000664217.1:ENST00000670279.1:ENST00000261643.8:ENST00000580561.1:ENST00000581931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.18155	2.337905	2.49426	0.0283931	0.0085468	0.127654	0.0551026
chr21	39180284	39180378	18255586	0	-	0.414894	(0.39,0.42]	chr21	1547890	1	CDS	CDS:UTR3:EXON_MRNA	PSMG1	ENSG00000183527.12	ENST00000331573.8:ENST00000411828.5:ENST00000380900.2:ENST00000431628.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.18155	2.337905	2.49426	0.0283931	0.0085468	0.127654	0.0551026
chr1	22091914	22092014	93083	0	+	0.34	(0.33,0.36]	chr1	10799	5	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	46	165	2	2.1042	2.337815	2.57143	1.07374e-4	2.7247e-6	0.00192008	1.02377e-4
chr6	159783965	159784065	8049111	0	-	0.42	(0.39,0.42]	chr6	615272	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000536807.1:ENST00000543532.5:ENST00000538530.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	82	2	1.98503	2.3374300000000003	2.68983	0.00330114	2.31702e-5	0.028478	5.49766e-4
chr1	32679902	32679991	130413	0	+	0.325843	(0.29,0.33]	chr1	16120	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	44	2	1.91015	2.33728	2.76441	0.00447087	2.69341e-4	0.034213	0.00434425
chr1	45511245	45511328	978297	0	-	0.457831	(0.455,0.49]	chr1	103084	5	UTR3	UTR3:EXON_MRNA	PRDX1	ENSG00000117450.15	ENST00000676549.1:ENST00000424390.2:ENST00000447184.6:ENST00000262746.5:ENST00000319248.13:ENST00000372079.1	protein_coding	protein_coding	protein_coding	protein_coding	22	114	2	2.04347	2.33712	2.63077	0.00160867	9.73976e-6	0.0169168	2.70457e-4
chr18	12987152	12987248	16764018	0	+	0.395833	(0.39,0.42]	chr18	1382774	2	UTR3	UTR3:EXON_MRNA	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	58	2	2.33095	2.337045	2.34314	8.79726e-4	7.09987e-4	0.0101404	0.00895243
chr1	116404444	116404526	423963	0	+	0.621951	(0.59,1]	chr1	41856	1	UTR3	UTR3:EXON_MRNA:INTRON	ATP1A1	ENSG00000163399.16	ENST00000295598.10:ENST00000537345.5:ENST00000369496.8:ENST00000440951.1	protein_coding	protein_coding	protein_coding	protein_coding	9	101	2	1.96195	2.33698	2.71201	0.0144738	2.96433e-4	0.0790046	0.00432938
chr12	110347207	110347299	13085922	0	+	0.271739	[0,0.29]	chr12	1020554	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	42	2	2.26021	2.3369400000000002	2.41367	0.00206871	6.78943e-4	0.0202834	0.0083133
chr1	44759276	44759348	173980	0	+	0.555556	(0.53,0.59]	chr1	22371	2	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	1.60439	2.33689	3.06939	0.0243675	6.54756e-4	0.111797	0.00860229
chr14	68788842	68788941	14684719	0	-	0.535354	(0.53,0.59]	chr14	1149951	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZFP36L1	ENSG00000185650.10	ENST00000555997.1:ENST00000439696.3:ENST00000336440.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	28	2	2.0404	2.33678	2.63316	0.0362529	0.00474401	0.148525	0.0361423
chr3	196354899	196354998	4665014	0	-	0.272727	[0,0.29]	chr3	385869	74	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	17	2	1.84905	2.33674	2.82443	0.0241194	0.0180803	0.110734	0.0920398
chr6	31795021	31795117	7662583	0	-	0.739583	(0.59,1]	chr6	585344	3	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000440048.1	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	2.22725	2.3365600000000004	2.44587	0.0105307	0.00535937	0.0644466	0.0406564
chr14	102027490	102027544	14495637	0	+	0.481481	(0.455,0.49]	chr14	1133168	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000647366.1:ENST00000647119.1:ENST00000554854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.98188	2.336205	2.69053	0.0226804	0.0182983	0.105116	0.0925808
chr1	180884953	180885052	586615	0	+	0.383838	(0.36,0.39]	chr1	60742	10	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.81435	2.336095	2.85784	0.0302191	0.00191736	0.129773	0.0183299
chr7	107902324	107902393	8457290	0	+	0.376812	(0.36,0.39]	chr7	646275	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000639772.1:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10:ENST00000451081.5:ENST00000450038.5:ENST00000453354.5:ENST00000460577.5:ENST00000494441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	2.28639	2.3360149999999997	2.38564	0.0476159	0.00768469	0.17993	0.050396
chr8	38128854	38128951	9291674	0	+	0.43299	(0.42,0.455]	chr8	710633	2	CDS	CDS:UTR3:EXON_MRNA	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000524247.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	2.03532	2.335985	2.63665	0.040947	0.0048172	0.163285	0.0365653
chr18	198046	198132	16716064	0	+	0.418605	(0.39,0.42]	chr18	1379123	1	CDS	CDS:UTR3:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000578942.5:ENST00000383589.6:ENST00000583119.5:ENST00000578786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	44	2	1.84551	2.3357099999999997	2.82591	0.0168113	2.09867e-4	0.0886699	0.00327655
chr11	65130001	65130088	12421660	0	-	0.678161	(0.59,1]	chr11	963742	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	SYVN1:MIR6751	ENSG00000162298.19:ENSG00000284489.1	ENST00000294256.12:ENST00000377190.8:ENST00000449943.5:ENST00000307289.10:ENST00000526060.5:ENST00000527765.1:ENST00000610479.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	5	47	2	1.55494	2.335705	3.11647	0.0511194	0.00535979	0.182342	0.0406564
chr1	110018551	110018650	401885	0	+	0.606061	(0.59,1]	chr1	39317	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8:ENST00000359172.3:ENST00000481423.1:ENST00000469401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.14957	2.335535	2.5215	0.032241	0.0126053	0.135671	0.0719957
chrX	48893540	48893634	19063440	0	-	0.62766	(0.59,1]	chrX	1620512	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TIMM17B	ENSG00000126768.12	ENST00000376582.7:ENST00000465150.6:ENST00000396779.7:ENST00000466995.5:ENST00000495490.6:ENST00000472645.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	48	2	1.82129	2.335365	2.84944	0.0227814	0.0128238	0.105293	0.0719798
chrX	120163787	120163884	18843942	0	+	0.412371	(0.39,0.42]	chrX	1605751	1	UTR3	UTR3:EXON_MRNA	RHOXF2	ENSG00000131721.6	ENST00000371388.5	protein_coding	protein_coding	protein_coding	protein_coding	12	57	2	2.03728	2.3350150000000003	2.63275	0.00508196	1.55045e-4	0.038965	0.00258327
chr3	57575610	57575673	4210705	0	-	0.412698	(0.39,0.42]	chr3	355318	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	27	2	1.96364	2.334775	2.70591	0.0185716	0.00890556	0.0932453	0.0565003
chr8	11821749	11821795	9201891	0	+	0.391304	(0.39,0.42]	chr8	703035	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531249.2:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	27	2	1.96364	2.334775	2.70591	0.0185716	0.00890556	0.0932453	0.0565003
chr2	37203153	37203252	1742657	0	+	0.262626	[0,0.29]	chr2	169570	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CEBPZOS	ENSG00000218739.10	ENST00000397064.6:ENST00000402297.6:ENST00000406711.5:ENST00000392061.6	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.5959700000000001	2.3347350000000002	3.0735	0.0533838	0.00785095	0.184995	0.0520241
chr9	92286535	92286618	10737522	0	-	0.39759	(0.39,0.42]	chr9	812385	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000490438.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	2.18025	2.334665	2.48908	0.0101318	0.00587938	0.0626311	0.0424857
chr17	51168292	51168343	16266622	0	+	0.568627	(0.53,0.59]	chr17	1319613	2	CDS	CDS:EXON_MRNA	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000393190.4:ENST00000570801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	61	2	1.95745	2.3346299999999998	2.71181	0.00586082	3.99651e-4	0.0427941	0.0054764
chr4	56446756	56446856	4848588	0	+	0.37	(0.36,0.39]	chr4	399435	1	CDS_START	CDS_START:CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	18	75	2	1.77073	2.334545	2.89836	0.00532822	1.33448e-5	0.0405598	3.49427e-4
chr12	56663436	56663531	13352199	0	-	0.336842	(0.33,0.36]	chr12	1051779	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	24	2	1.82006	2.334235	2.84841	0.0323353	0.0020676	0.135977	0.0194849
chr1	101786436	101786534	1200894	0	-	0.540816	(0.53,0.59]	chr1	117316	2	EXON_PSEUDO	EXON_PSEUDO	RPSAP19	ENSG00000183298.5	ENST00000431241.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	45	2	1.5389	2.334165	3.12943	0.0306924	4.81557e-4	0.130016	0.00677016
chr2	237098034	237098132	2451732	0	+	0.357143	(0.33,0.36]	chr2	221180	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	COPS8	ENSG00000198612.11	ENST00000392008.6:ENST00000354371.7:ENST00000447464.1:ENST00000465362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	29	2	1.96645	2.33415	2.70185	0.0197415	0.00121183	0.095966	0.0129756
chr17	36495898	36495986	16521902	0	-	0.454545	(0.42,0.455]	chr17	1351831	4	UTR3	UTR3:EXON_MRNA	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000611622.4:ENST00000620567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	2.32629	2.3341000000000003	2.34191	0.0159091	0.0153564	0.0854674	0.0832114
chr3	153164342	153164442	3818943	0	+	0.43	(0.42,0.455]	chr3	325742	12	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.32629	2.3341000000000003	2.34191	0.0159091	0.0153564	0.0854674	0.0832114
chr2	43889733	43889828	2622928	0	-	0.431579	(0.42,0.455]	chr2	236091	1	CDS	CDS:UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000682154.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000682696.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682353.1:ENST00000682779.1:ENST00000684433.1:ENST00000682885.1:ENST00000419884.6:ENST00000684743.1:ENST00000463456.5:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000683096.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000682434.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	68	2	2.29236	2.3340199999999998	2.37568	8.0114e-4	4.96621e-4	0.00996644	0.00648267
chr2	3580163	3580217	1616683	0	+	0.5	(0.49,0.53]	chr2	160402	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS7	ENSG00000171863.15	ENST00000645674.2:ENST00000646909.1:ENST00000647131.1:ENST00000462576.5:ENST00000403564.5:ENST00000407445.8:ENST00000481006.1:ENST00000406376.1:ENST00000645540.1:ENST00000472966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	93	2	2.27527	2.33399	2.39271	4.11094e-4	2.19498e-4	0.00604141	0.0033943
chr11	61792561	61792641	12405891	0	-	0.675	(0.59,1]	chr11	960578	1	UTR5	UTR5:EXON_MRNA:PRIMIRNA	TMEM258:MIR611	ENSG00000134825.16:ENSG00000284108.1	ENST00000537328.6:ENST00000535297.1:ENST00000257262.12:ENST00000545210.5:ENST00000541893.5:ENST00000543510.1:ENST00000540434.1:ENST00000384869.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	7	70	2	1.94138	2.333815	2.72625	0.0100942	0.00394493	0.0625146	0.0322851
chr14	21362793	21362870	14521256	0	-	0.402597	(0.39,0.42]	chr14	1137361	1	CDS	CDS:EXON_MRNA	SUPT16H	ENSG00000092201.10	ENST00000216297.7	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.77926	2.33381	2.88836	0.0429531	0.0102432	0.161091	0.062872
chr20	63521960	63522042	17865471	0	+	0.658537	(0.59,1]	chr20	1510945	2	UTR3	UTR3:EXON_MRNA	PPDPF	ENSG00000125534.10	ENST00000370179.8	protein_coding	protein_coding	protein_coding	protein_coding	17	177	2	2.21783	2.333765	2.4497	0.00124385	2.54048e-4	0.0137442	0.00382054
chr1	154157638	154157721	1302315	0	-	0.46988	(0.455,0.49]	chr1	131066	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000513769.5:ENST00000302206.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	59	2	2.31283	2.333735	2.35464	0.00103268	8.71378e-4	0.011478	0.0106963
chr6	36855418	36855516	7682944	0	-	0.438776	(0.42,0.455]	chr6	589169	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPIL1	ENSG00000137168.8	ENST00000483552.1:ENST00000373699.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	2.22933	2.33333	2.43733	0.0103896	0.0102262	0.0640167	0.062872
chr7	130131836	130131936	8529043	0	+	0.4	(0.39,0.42]	chr7	651128	12	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.79377	2.33312	2.87247	0.0299302	1.58014e-4	0.129773	0.00261731
chr15	90966578	90966653	15439135	0	-	0.52	(0.49,0.53]	chr15	1221336	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.66773	2.33311	2.99849	0.0381288	0.00630123	0.149227	0.0445415
chr17	44319906	44320000	16557789	0	-	0.638298	(0.59,1]	chr17	1359328	4	UTR3	UTR3:EXON_MRNA	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000592372.5:ENST00000593166.1:ENST00000537904.6:ENST00000588767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	106	2	2.20941	2.332725	2.45604	0.00355442	0.0010867	0.0300236	0.0118659
chr2	47160478	47160577	2631441	0	-	0.414141	(0.39,0.42]	chr2	236916	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	103	2	2.05553	2.33253	2.60953	4.81861e-4	3.14991e-5	0.00632264	7.72764e-4
chr15	59768947	59769046	14962130	0	+	0.40404	(0.39,0.42]	chr15	1175886	7	EXON_PSEUDO	EXON_PSEUDO	RPS3AP6	ENSG00000234797.5	ENST00000484430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	51	2	1.81079	2.3324749999999996	2.85416	0.00341071	0.00225069	0.0283456	0.021386
chr13	52642878	52642973	13748712	0	+	0.431579	(0.42,0.455]	chr13	1083046	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-78J21.7:HNRNPA1L2	ENSG00000273784.5:ENSG00000139675.13	ENST00000683187.1:ENST00000357495.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	40	2	2.26097	2.33242	2.40387	0.00404179	0.00231472	0.032143	0.0219615
chr17	39984293	39984388	16222441	0	+	0.568421	(0.53,0.59]	chr17	1311716	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	21	2	2.16037	2.33242	2.50447	0.0301162	0.0254312	0.130016	0.117089
chr9	65573383	65573439	10278593	0	+	0.428571	(0.42,0.455]	chr9	773890	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000276723.1	ENST00000614432.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	8	39	2	2.04128	2.33237	2.62346	0.00699169	0.00164881	0.0475909	0.0163523
chr20	3930089	3930188	17883225	0	-	0.414141	(0.39,0.42]	chr20	1513717	29	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.3212	2.332345	2.34349	0.0169272	0.00312058	0.0890655	0.0264364
chrX	53604752	53604834	19077947	0	-	0.536585	(0.53,0.59]	chrX	1622933	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	34	2	2.16037	2.332185	2.504	0.0254312	0.00279409	0.117089	0.0241702
chr19	15611842	15611935	17245482	0	+	0.473118	(0.455,0.49]	chr19	1422501	3	EXON_PSEUDO	EXON_PSEUDO	RPL23AP2	ENSG00000225067.4	ENST00000471227.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	26	117	2	1.98752	2.3321449999999997	2.67677	4.22438e-4	4.04992e-5	0.00573557	9.64741e-4
chr2	177221083	177221182	2228554	0	+	0.333333	(0.33,0.36]	chr2	203394	19	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	97	2	2.03954	2.331535	2.62353	0.00140988	9.89635e-6	0.0151901	2.74064e-4
chr1	150574573	150574673	1288923	0	-	0.36	(0.33,0.36]	chr1	128249	5	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	1.65713	2.33143	3.00573	0.0528205	0.00630535	0.195536	0.044701
chr11	111739246	111739344	12602082	0	-	0.357143	(0.33,0.36]	chr11	976937	15	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R1B	ENSG00000137713.16	ENST00000311129.9:ENST00000426998.6:ENST00000527614.6	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.65713	2.33143	3.00573	0.0528205	0.00630535	0.195536	0.044701
chr2	144399195	144399291	2929344	0	-	0.458333	(0.455,0.49]	chr2	259644	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZEB2	ENSG00000169554.22	ENST00000636471.1:ENST00000627532.3:ENST00000638128.1:ENST00000637304.1:ENST00000636179.1:ENST00000636820.1:ENST00000637045.1:ENST00000636413.1:ENST00000638007.1:ENST00000638087.1:ENST00000419938.5:ENST00000409487.7:ENST00000440875.6:ENST00000636732.2:ENST00000636026.2:ENST00000675069.1:ENST00000539609.7:ENST00000558170.6:ENST00000303660.8:ENST00000675145.1:ENST00000427902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.12994	2.3314	2.53286	0.0304832	0.0282409	0.130204	0.124386
chrX	119588520	119588612	19191788	0	-	0.456522	(0.455,0.49]	chrX	1631494	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NKRF	ENSG00000186416.17	ENST00000304449.8:ENST00000649446.1:ENST00000542113.3:ENST00000487600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.12994	2.3314	2.53286	0.0304832	0.0282409	0.130204	0.124386
chr20	34281033	34281133	17946665	0	-	0.53	(0.49,0.53]	chr20	1519948	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	RP4-785G19.5:AHCY	ENSG00000250917.1:ENSG00000101444.13	ENST00000512005.1:ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	8	46	2	1.46766	2.331245	3.19483	0.0523669	6.77168e-5	0.194793	0.0013157
chr4	2514498	2514595	4683878	0	+	0.587629	(0.53,0.59]	chr4	388476	8	UTR3	UTR3:EXON_MRNA:INTRON	RNF4	ENSG00000063978.16	ENST00000541204.5:ENST00000314289.13:ENST00000511859.5:ENST00000511600.5:ENST00000508235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	25	2	1.88327	2.33124	2.77921	0.0298124	0.0132865	0.129773	0.0740932
chr6	75255505	75255604	7800324	0	-	0.373737	(0.36,0.39]	chr6	597646	27	UTR3	UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	35	2	2.17306	2.33114	2.48922	0.0110399	0.00224077	0.0652374	0.0207282
chr10	75214020	75214070	11126435	0	+	0.46	(0.455,0.49]	chr10	846638	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1:ENST00000447677.5:ENST00000413289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	1.96875	2.331095	2.69344	0.0480352	0.0176068	0.180552	0.0925619
chr2	64632696	64632794	2704968	0	-	0.459184	(0.455,0.49]	chr2	241251	12	UTR3	UTR3:EXON_MRNA	SERTAD2	ENSG00000179833.4	ENST00000313349.3	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.96875	2.331095	2.69344	0.0480352	0.0176068	0.180552	0.0925619
chr2	227531150	227531210	2415140	0	+	0.483333	(0.455,0.49]	chr2	217244	2	CDS	CDS:EXON_MRNA:INTRON	AGFG1	ENSG00000173744.18	ENST00000409979.6:ENST00000310078.13:ENST00000409315.5:ENST00000373671.7:ENST00000409171.5:ENST00000456594.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.96875	2.331095	2.69344	0.0480352	0.0176068	0.180552	0.0925619
chr12	120557281	120557373	13116860	0	+	0.5	(0.49,0.53]	chr12	1023870	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RNF10	ENSG00000022840.17	ENST00000325954.9:ENST00000542438.1:ENST00000538796.5:ENST00000413266.6:ENST00000536869.5:ENST00000543578.1:ENST00000535417.1:ENST00000542207.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	26	2	1.93897	2.330745	2.72252	0.0161474	0.0151118	0.0860154	0.0820541
chr6	31784594	31784654	7662465	0	-	0.566667	(0.53,0.59]	chr6	585306	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000495010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	45	2	2.23406	2.33073	2.4274	0.00870728	0.00178327	0.0558165	0.017318
chr5	151807333	151807433	6299799	0	+	0.41	(0.39,0.42]	chr5	491960	19	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	50	2	1.33865	2.3307149999999996	3.32278	0.0417156	2.95704e-5	0.165497	6.70125e-4
chr11	34100546	34100644	11905500	0	+	0.346939	(0.33,0.36]	chr11	909587	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	73	2	1.51299	2.33067	3.14835	0.0220425	1.84207e-6	0.105595	6.69371e-5
chr5	10402383	10402452	5875201	0	+	0.42029	(0.42,0.455]	chr5	461975	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000514961.1:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	67	2	2.18411	2.33063	2.47715	9.36125e-4	4.42432e-4	0.0105876	0.00630885
chr7	74174742	74174842	8333845	0	+	0.75	(0.59,1]	chr7	634925	3	SS5_PROX	SS5_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000489484.5:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000479338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	70	2	2.03921	2.330525	2.62184	0.0371471	8.93288e-4	0.151849	0.010245
chr1	19197740	19197811	876958	0	-	0.464789	(0.455,0.49]	chr1	90390	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	2.15167	2.330355	2.50904	0.0310515	0.00161198	0.131262	0.0160849
chr10	104259575	104259649	11236774	0	+	0.391892	(0.39,0.42]	chr10	856312	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSTO1	ENSG00000148834.13	ENST00000470554.5:ENST00000493946.1:ENST00000539281.5:ENST00000369710.8:ENST00000369713.10:ENST00000445155.5:ENST00000432659.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	38	2	2.27868	2.33027	2.38186	0.00601449	0.00209079	0.0434483	0.0196408
chr22	20951503	20951600	18300198	0	+	0.494845	(0.49,0.53]	chr22	1553647	18	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	89	2	1.44884	2.330195	3.21155	0.0353033	1.16903e-6	0.146227	4.56364e-5
chr8	66925488	66925541	9866676	0	-	0.641509	(0.59,1]	chr8	745985	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG6	ENSG00000245910.8	ENST00000520348.5:ENST00000520944.5:ENST00000521399.5:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	42	484	2	1.61061	2.3301600000000002	3.04971	0.00557431	6.3499e-7	0.0419048	2.71691e-5
chr9	89315169	89315233	10349726	0	+	0.390625	(0.39,0.42]	chr9	778998	1	CDS	CDS:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	12	55	2	1.49767	2.329875	3.16208	0.0278687	2.3671e-5	0.125776	5.5951e-4
chr7	84984315	84984410	8362713	0	+	0.410526	(0.39,0.42]	chr7	637705	9	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P8	ENSG00000229251.3	ENST00000436090.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	24	2	1.46372	2.3297999999999996	3.19588	0.0529342	0.00321212	0.184259	0.0280721
chr10	73398180	73398248	11571639	0	-	0.647059	(0.59,1]	chr10	880911	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	1.96416	2.329465	2.69477	0.044741	0.020208	0.166115	0.0978331
chr11	119334724	119334824	12163894	0	+	0.65	(0.59,1]	chr11	938090	3	UTR5	UTR5:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	1.96416	2.329465	2.69477	0.044741	0.020208	0.166115	0.0978331
chr3	180971343	180971438	3933693	0	+	0.336842	(0.33,0.36]	chr3	330742	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5:ENST00000482125.1:ENST00000481383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.13965	2.32926	2.51887	0.0358636	0.0297101	0.147298	0.129986
chr7	143306043	143306140	8581144	0	+	0.350515	(0.33,0.36]	chr7	655693	11	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	14	2	2.13965	2.32926	2.51887	0.0358636	0.0297101	0.147298	0.129986
chr16	70526656	70526726	15729682	0	+	0.428571	(0.42,0.455]	chr16	1252878	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SF3B3	ENSG00000189091.13	ENST00000566095.6:ENST00000577085.1:ENST00000302516.10:ENST00000567654.1:ENST00000564899.1	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.11785	2.3291399999999998	2.54043	0.0154862	0.00705852	0.0836691	0.047732
chrX	124022530	124022627	18851764	0	+	0.340206	(0.33,0.36]	chrX	1606146	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	STAG2	ENSG00000101972.19	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	25	2	2.18663	2.32913	2.47163	0.0129725	0.00609632	0.0724783	0.043509
chr1	37569030	37569121	947252	0	-	0.483516	(0.455,0.49]	chr1	99526	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GNL2	ENSG00000134697.13	ENST00000373062.8:ENST00000462812.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	2.30139	2.3289150000000003	2.35644	0.0530131	0.00555877	0.195536	0.0405952
chr1	47218151	47218249	985531	0	-	0.530612	(0.53,0.59]	chr1	104046	20	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	2.01284	2.3287950000000004	2.64475	0.00453071	0.00319369	0.0351187	0.0267777
chr7	150950335	150950420	9128658	0	-	0.611765	(0.59,1]	chr7	697468	3	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	100	2	1.72824	2.3287899999999997	2.92934	0.0471232	8.94753e-5	0.179872	0.00165983
chr8	23566365	23566454	9230657	0	+	0.573034	(0.53,0.59]	chr8	706548	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	222	2	2.00809	2.32867	2.64925	7.87806e-4	2.07261e-6	0.00981869	7.36127e-5
chrX	141905607	141905707	18883522	0	+	0.58	(0.53,0.59]	chrX	1608997	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.14205	2.328525	2.515	0.0292633	0.0123179	0.129773	0.070688
chr11	59638093	59638192	12401036	0	-	0.393939	(0.39,0.42]	chr11	959467	15	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.27012	2.3284700000000003	2.38682	0.00945558	0.00228306	0.0594007	0.0209856
chr6	5109148	5109239	7579323	0	-	0.505495	(0.49,0.53]	chr6	578324	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LYRM4	ENSG00000214113.11	ENST00000606472.1:ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000458438.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	27	2	2.09506	2.3284450000000003	2.56183	0.0261296	0.00820526	0.118976	0.05339
chr7	5593310	5593402	8111992	0	+	0.630435	(0.59,1]	chr7	620013	4	CDS	CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8	protein_coding	protein_coding	protein_coding	protein_coding	5	55	2	1.8502	2.328285	2.80637	0.0334531	0.00274489	0.140296	0.0238522
chr1	36137886	36137978	939930	0	-	0.456522	(0.455,0.49]	chr1	98937	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRAPPC3	ENSG00000054116.12	ENST00000617904.4:ENST00000616074.4:ENST00000616395.4:ENST00000373166.8:ENST00000462715.1:ENST00000373163.5:ENST00000373162.5:ENST00000469757.1:ENST00000373159.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	2.30139	2.32827	2.35515	0.0530131	0.0140117	0.195536	0.0767536
chr11	9403289	9403371	11792439	0	+	0.463415	(0.455,0.49]	chr11	902812	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1:ENST00000533680.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	18	2	2.30139	2.32827	2.35515	0.0530131	0.0140117	0.195536	0.0767536
chr14	24238905	24239004	14180627	0	+	0.484848	(0.455,0.49]	chr14	1111695	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GMPR2	ENSG00000100938.18	ENST00000355299.8:ENST00000620807.4:ENST00000559836.5:ENST00000561038.5:ENST00000559287.5:ENST00000559910.5:ENST00000348719.11:ENST00000420554.6:ENST00000557854.5:ENST00000399440.7:ENST00000559104.5:ENST00000456667.7:ENST00000558483.5:ENST00000558748.1:ENST00000559479.1:ENST00000558788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.30139	2.32827	2.35515	0.0530131	0.0140117	0.195536	0.0767536
chr7	107195981	107196055	8455524	0	+	0.459459	(0.455,0.49]	chr7	645912	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HBP1	ENSG00000105856.14	ENST00000468410.5:ENST00000222574.9:ENST00000485846.5:ENST00000463202.5:ENST00000498408.1:ENST00000461963.1:ENST00000607681.1:ENST00000463790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	18	2	2.30139	2.32827	2.35515	0.0530131	0.0140117	0.195536	0.0767536
chr2	216499948	216499958	2381787	0	+	0.4	(0.39,0.42]	chr2	214024	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPL37A	ENSG00000197756.10	ENST00000490649.1:ENST00000478153.1:ENST00000491306.6:ENST00000487233.1:ENST00000600880.5:ENST00000446558.5:ENST00000420712.1:ENST00000359681.3:ENST00000598925.5:ENST00000427280.6:ENST00000456586.5:ENST00000441179.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	37	2	2.02403	2.32816	2.63229	0.0111868	7.8066e-4	0.0665375	0.00973486
chr19	3984135	3984206	17430265	0	-	0.605634	(0.59,1]	chr19	1454737	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600720.1:ENST00000594885.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	52	526	2	2.28427	2.328115	2.37196	1.45995e-4	4.00235e-5	0.00267496	8.61253e-4
chr1	161963577	161963676	503866	0	+	0.353535	(0.33,0.36]	chr1	54599	51	UTR3	UTR3:EXON_MRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000681738.1:ENST00000681801.1:ENST00000367942.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	2.00765	2.32808	2.64851	0.0287001	0.00492353	0.128757	0.0366648
chr19	10682536	10682620	17226208	0	+	0.654762	(0.59,1]	chr19	1418886	1	CDS	CDS:EXON_MRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.0452	2.3279699999999997	2.61074	0.025486	0.0179494	0.117089	0.0939469
chr9	35707071	35707162	10639558	0	-	0.593407	(0.59,1]	chr9	805031	1	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	66	2	2.24397	2.32787	2.41177	0.0206682	0.00235332	0.0997234	0.0215127
chr16	89561595	89561683	15810089	0	+	0.636364	(0.59,1]	chr16	1258676	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	241	2	2.01662	2.3277400000000004	2.63886	8.0585e-4	1.33764e-4	0.00946909	0.00248816
chr8	108229132	108229195	10002582	0	-	0.428571	(0.42,0.455]	chr8	754199	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000677746.1:ENST00000523646.1:ENST00000676931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	84	2	2.22242	2.32755	2.43268	0.001203	1.01528e-4	0.0134762	0.00182725
chr9	133020774	133020874	10502749	0	+	0.53	(0.49,0.53]	chr9	794052	14	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P5	ENSG00000196205.8	ENST00000436459.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	51	263	2	1.99598	2.327515	2.65905	1.87245e-4	1.0654e-6	0.00325006	4.2205e-5
chr2	132255576	132255675	2878628	0	-	0.40404	(0.39,0.42]	chr2	257829	24	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1202	5530	2	1.93158	2.327475	2.72337	1.88371e-5	1.33278e-8	5.10782e-4	9.93516e-7
chr7	100605152	100605215	8427982	0	+	0.68254	(0.59,1]	chr7	643256	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PCOLCE	ENSG00000106333.13	ENST00000223061.6:ENST00000482863.1:ENST00000487172.1:ENST00000468214.1:ENST00000460002.1:ENST00000490909.1:ENST00000486440.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	84	2	1.96394	2.327235	2.69053	0.0453144	3.32141e-4	0.174798	0.00472432
chr19	10259713	10259813	17224490	0	+	0.66	(0.59,1]	chr19	1418475	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MRPL4	ENSG00000105364.14	ENST00000592514.5:ENST00000307422.9:ENST00000253099.11:ENST00000393733.6	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.04362	2.3271800000000002	2.61074	0.036186	0.025486	0.145024	0.117089
chr8	30082849	30082949	9780661	0	-	0.7	(0.59,1]	chr8	739547	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000518340.1:ENST00000522055.1:ENST00000523761.1:ENST00000517569.1:ENST00000521083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.04362	2.3271800000000002	2.61074	0.036186	0.025486	0.145024	0.117089
chr8	54047864	54047964	9833045	0	-	0.24	[0,0.29]	chr8	744007	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000520718.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	2.16074	2.327125	2.49351	0.0222978	0.0015585	0.105845	0.0156889
chr3	180976292	180976391	3933746	0	+	0.343434	(0.33,0.36]	chr3	330755	1	UTR3	UTR3:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000475315.5:ENST00000357559.9:ENST00000468861.5:ENST00000491062.5:ENST00000445140.6:ENST00000472339.5:ENST00000480918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	67	2	1.94312	2.327045	2.71097	8.52867e-4	6.6741e-4	0.00995384	0.00867533
chr9	97930528	97930627	10759656	0	-	0.40404	(0.39,0.42]	chr9	814691	6	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	19	88	2	2.3075	2.3270049999999998	2.34651	0.00129243	8.22474e-5	0.0141493	0.00155552
chr17	67344692	67344780	16652512	0	-	0.397727	(0.39,0.42]	chr17	1369549	2	CDS	CDS:UTR3:EXON_MRNA	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	2.03239	2.32685	2.62131	0.00663814	0.00609677	0.046176300000000003	0.0439136
chr1	31005941	31006031	917041	0	-	0.477778	(0.455,0.49]	chr1	96071	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	13	2	2.30139	2.326765	2.35214	0.0530131	0.0455621	0.195536	0.168044
chr21	46268352	46268448	18281670	0	-	0.489583	(0.455,0.49]	chr21	1551038	4	INTRON	INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.30139	2.326765	2.35214	0.0530131	0.0455621	0.195536	0.168044
chr7	139716127	139716225	9104837	0	-	0.479592	(0.455,0.49]	chr7	694707	3	CDS	CDS:EXON_MRNA	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.30139	2.326765	2.35214	0.0530131	0.0455621	0.195536	0.168044
chr9	35753563	35753661	10246732	0	+	0.459184	(0.455,0.49]	chr9	770910	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RGP1	ENSG00000107185.10	ENST00000378078.5:ENST00000496906.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	13	2	2.30139	2.326765	2.35214	0.0530131	0.0455621	0.195536	0.168044
chrX	55221766	55221820	18705515	0	+	0.481481	(0.455,0.49]	chrX	1596386	1	CDS	CDS:EXON_MRNA	PAGE5	ENSG00000158639.13	ENST00000374955.8:ENST00000289619.9:ENST00000374952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	13	2	2.30139	2.326765	2.35214	0.0530131	0.0455621	0.195536	0.168044
chr6	31510563	31510656	7115429	0	+	0.55914	(0.53,0.59]	chr6	545681	8	UTR3	UTR3:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	4	27	2	2.29789	2.3265000000000002	2.35511	0.0445399	0.00674768	0.172163	0.0468196
chr7	152179930	152180028	9135360	0	-	0.55102	(0.53,0.59]	chr7	698405	2	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000679393.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.29789	2.3265000000000002	2.35511	0.0445399	0.00674768	0.172163	0.0468196
chr21	8439822	8439898	18041942	0	+	0.513158	(0.49,0.53]	chr21	1530901	1	EXON_SMALL	EXON_SMALL:INTRON	CH507-528H12.1:RNA5-8SN1	ENSG00000280441.3:ENSG00000278189.1	ENST00000651813.1:ENST00000652379.1:ENST00000619471.1	rRNA	rRNA	rRNA:lncRNA	rRNA:lncRNA	800	3941	2	2.32278	2.326335	2.32989	9.38313e-7	8.13117e-7	3.79261e-5	3.71963e-5
chr7	73191370	73191462	8331417	0	+	0.478261	(0.455,0.49]	chr7	634280	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	GTF2IP4	ENSG00000233369.7	ENST00000544802.5:ENST00000453092.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	6	30	2	1.72305	2.32603	2.92901	0.0324537	0.00141135	0.134899	0.0151901
chr1	149885690	149885785	1287100	0	-	0.589474	(0.53,0.59]	chr1	127851	14	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	10	69	2	1.97928	2.32563	2.67198	0.0218546	7.04237e-5	0.104785	0.00135811
chr19	811295	811388	17189587	0	+	0.677419	(0.59,1]	chr19	1411055	6	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	155	2	2.21783	2.32557	2.43331	0.00124385	5.15628e-4	0.0137442	0.00667434
chr6	32185314	32185411	7664813	0	-	0.484536	(0.455,0.49]	chr6	586181	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PBX2:XXbac-BPG300A18.13	ENSG00000204304.12:ENSG00000273333.2	ENST00000375050.6:ENST00000559458.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	36	2	1.7301	2.325545	2.92099	0.0168678	0.00138399	0.0889456	0.0143168
chr6	31780440	31780504	7662409	0	-	0.59375	(0.59,1]	chr6	585268	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000428445.1	protein_coding	protein_coding	protein_coding	protein_coding	4	41	2	1.72824	2.32552	2.9228	0.0471232	0.00981698	0.179872	0.0612992
chr5	154817312	154817410	6315044	0	+	0.418367	(0.39,0.42]	chr5	492515	34	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	11	44	2	1.7965	2.32533	2.85416	0.00551087	0.00225069	0.0402901	0.021386
chrX	86160263	86160362	19141867	0	-	0.535354	(0.53,0.59]	chrX	1627919	1	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P29	ENSG00000215093.3	ENST00000416082.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	67	2	2.13424	2.325265	2.51629	0.00254381	5.70328e-4	0.0227544	0.00779621
chr2	106698291	106698387	2825363	0	-	0.4375	(0.42,0.455]	chr2	252231	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	52	2	1.47603	2.32526	3.17449	0.023817	7.7054e-5	0.112408	0.00146588
chr11	9588997	9589095	11793801	0	+	0.357143	(0.33,0.36]	chr11	903118	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000530712.6:ENST00000527848.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	57	2	2.25264	2.3252550000000003	2.39787	0.00367014	1.85787e-4	0.0308215	0.00297506
chr15	41306234	41306334	14885483	0	+	0.41	(0.39,0.42]	chr15	1169280	83	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	10	47	2	2.26834	2.3251	2.38186	0.00601449	8.525e-4	0.0434483	0.00994988
chr7	121076577	121076648	8494613	0	+	0.43662	(0.42,0.455]	chr7	648335	1	UTR5	UTR5:EXON_MRNA:INTRON	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000520801.5:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	84	2	1.96087	2.325095	2.68932	0.00983972	1.59251e-5	0.0615953	4.05015e-4
chr16	18792954	18793053	15877075	0	-	0.363636	(0.36,0.39]	chr16	1269296	14	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000546206.6:ENST00000562819.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	38	176	2	1.88758	2.32496	2.76234	0.0012483	5.06702e-7	0.0137762	2.23828e-5
chr11	59575684	59575783	12400603	0	-	0.454545	(0.42,0.455]	chr11	959394	14	UTR3	UTR3:EXON_MRNA	OSBP	ENSG00000110048.12	ENST00000263847.6	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.05515	2.324885	2.59462	0.017518	0.0062772	0.0924156	0.0445415
chr8	47966186	47966259	9316172	0	+	0.561644	(0.53,0.59]	chr8	713541	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000650216.1:ENST00000519138.1:ENST00000647877.1:ENST00000520637.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	37	2	2.01641	2.3247850000000003	2.63316	0.0108917	0.00474401	0.0645168	0.0361423
chr10	73246006	73246091	11570235	0	-	0.458824	(0.455,0.49]	chr10	880660	2	CDS	CDS:EXON_MRNA	DNAJC9	ENSG00000213551.7	ENST00000372950.6	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.95898	2.3247549999999997	2.69053	0.047107	0.0182983	0.172269	0.0925808
chr17	41908988	41909068	16544189	0	-	0.4625	(0.455,0.49]	chr17	1356577	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6:ENST00000590770.5:ENST00000590735.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.95898	2.3247549999999997	2.69053	0.047107	0.0182983	0.172269	0.0925808
chr6	34879966	34880063	7675205	0	-	0.474227	(0.455,0.49]	chr6	588165	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TAF11	ENSG00000064995.18	ENST00000361288.9:ENST00000650109.1:ENST00000420584.3	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.95898	2.3247549999999997	2.69053	0.047107	0.0182983	0.172269	0.0925808
chr7	100033799	100033898	8425092	0	+	0.474747	(0.455,0.49]	chr7	642419	6	CDS	CDS:EXON_MRNA	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.95898	2.3247549999999997	2.69053	0.047107	0.0182983	0.172269	0.0925808
chr18	9400823	9400923	16753340	0	+	0.25	[0,0.29]	chr18	1381535	14	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.15488	2.324195	2.49351	0.0436536	0.0015585	0.170594	0.0156889
chr3	185490374	185490471	4625805	0	-	0.505155	(0.49,0.53]	chr3	382039	9	UTR3	UTR3:EXON_MRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	28	2	1.64924	2.323865	2.99849	0.0286659	0.00630123	0.126175	0.0445415
chr10	18675611	18675710	10946921	0	+	0.40404	(0.39,0.42]	chr10	833591	5	UTR3	UTR3:EXON_MRNA	ARL5B	ENSG00000165997.5	ENST00000377275.4	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.18155	2.32364	2.46573	0.0283931	0.00349672	0.127654	0.0288123
chr8	47794289	47794359	9815686	0	-	0.4	(0.39,0.42]	chr8	742517	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.18155	2.32364	2.46573	0.0283931	0.00349672	0.127654	0.0288123
chr1	171341012	171341112	536506	0	+	0.34	(0.33,0.36]	chr1	57552	2	SS3_PROX	SS3_PROX:INTRON	FMO4	ENSG00000076258.10	ENST00000367749.4:ENST00000480136.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	25	2	2.12835	2.3236100000000004	2.51887	0.0358636	0.00459785	0.147298	0.0351308
chr22	20587446	20587539	18299209	0	+	0.72043	(0.59,1]	chr22	1553516	9	UTR3	UTR3:EXON_MRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.87297	2.323575	2.77418	0.0308113	0.0160729	0.130016	0.0860154
chrM	2134	2232	19377160	0	+	0.387755	(0.36,0.39]	chrM	1649798	17	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	5619	21312	2	2.25209	2.323545	2.395	6.62819e-7	2.74104e-7	3.12517e-5	1.32286e-5
chr22	21688731	21688790	18303687	0	+	0.610169	(0.59,1]	chr22	1554361	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	1.96265	2.3232850000000003	2.68392	0.0238491	0.0202468	0.112466	0.0984041
chr17	40389319	40389418	16538734	0	-	0.353535	(0.33,0.36]	chr17	1354547	9	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000577541.1	protein_coding	protein_coding	protein_coding	protein_coding	16	65	2	1.51299	2.32305	3.13311	0.0220425	4.42881e-6	0.105595	1.40161e-4
chr17	28575229	28575329	16485939	0	-	0.56	(0.53,0.59]	chr17	1347759	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9:ENST00000460201.6:ENST00000584086.5:ENST00000581807.5:ENST00000435638.5:ENST00000578590.1:ENST00000582381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	63	2	2.23406	2.322915	2.41177	0.00870728	3.64378e-4	0.0558165	0.00509947
chr16	53325191	53325290	15667645	0	+	0.272727	[0,0.29]	chr16	1245316	4	UTR3	UTR3:EXON_MRNA	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000564845.5:ENST00000398510.7:ENST00000565803.2:ENST00000219084.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	15	2	1.81505	2.322725	2.8304	0.0409713	0.0121878	0.163285	0.0701019
chr12	120199117	120199205	13579758	0	-	0.534091	(0.53,0.59]	chr12	1068813	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	74	405	2	2.01963	2.32272	2.62581	6.80399e-5	1.97465e-6	0.00132115	7.81897e-5
chr5	168552383	168552483	6968941	0	-	0.41	(0.39,0.42]	chr5	532791	40	UTR3	UTR3:EXON_MRNA:EXON_PSEUDO	PANK3:SLC2A3P1	ENSG00000120137.7:ENSG00000253861.1	ENST00000239231.7:ENST00000519666.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	6	28	2	2.02403	2.32267	2.62131	0.0111868	0.00609677	0.0665375	0.0439136
chr19	57307175	57307274	17405830	0	+	0.373737	(0.36,0.39]	chr19	1450093	30	EXON_LNCRNA	EXON_LNCRNA	CTC-444N24.11	ENSG00000268205.1	ENST00000593427.1	lncRNA	lncRNA	lncRNA	lncRNA	4	17	2	1.85874	2.3226649999999998	2.78659	0.0415243	0.0132982	0.164804	0.0740932
chr10	49958369	49958424	11039489	0	+	0.436364	(0.42,0.455]	chr10	840851	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.07474	2.322625	2.57051	0.0338882	0.0265466	0.139841	0.120071
chr10	95628429	95628492	11633100	0	-	0.444444	(0.42,0.455]	chr10	886043	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ALDH18A1	ENSG00000059573.9	ENST00000371224.7:ENST00000371221.3:ENST00000489386.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.07474	2.322625	2.57051	0.0338882	0.0265466	0.139841	0.120071
chr14	90405308	90405407	14455585	0	+	0.424242	(0.42,0.455]	chr14	1128586	7	UTR3	UTR3:EXON_MRNA	CALM1	ENSG00000198668.13	ENST00000356978.9:ENST00000626705.2:ENST00000553630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	2.07474	2.322625	2.57051	0.0338882	0.0265466	0.139841	0.120071
chr7	32982940	32983039	8211287	0	+	0.454545	(0.42,0.455]	chr7	626613	20	INTRON	INTRON	FKBP9	ENSG00000122642.11	ENST00000538336.5:ENST00000494374.5:ENST00000242209.9:ENST00000472007.5:ENST00000489038.5:ENST00000490776.3:ENST00000418354.5:ENST00000463443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.07474	2.322625	2.57051	0.0338882	0.0265466	0.139841	0.120071
chr2	173368235	173368330	2218767	0	+	0.4	(0.39,0.42]	chr2	202933	7	UTR3	UTR3:EXON_MRNA	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000496441.5:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	1.93908	2.322495	2.70591	0.0185716	0.0154765	0.0932453	0.0836906
chr3	39097464	39097560	4126334	0	-	0.40625	(0.39,0.42]	chr3	345289	10	UTR3	UTR3:EXON_MRNA	GORASP1	ENSG00000114745.14	ENST00000319283.8:ENST00000441302.6:ENST00000452389.6:ENST00000453680.5:ENST00000422110.6:ENST00000431601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	1.93908	2.322495	2.70591	0.0185716	0.0154765	0.0932453	0.0836906
chr16	3182611	3182706	15828816	0	-	0.557895	(0.53,0.59]	chr16	1263135	8	INTRON	INTRON	AJ003147.8	ENSG00000262521.1	ENST00000576762.1	lncRNA	lncRNA	lncRNA	lncRNA	101	560	2	1.96835	2.32245	2.67655	7.51975e-5	4.85379e-7	0.00158	2.15445e-5
chr11	119044279	119044372	12626405	0	-	0.473118	(0.455,0.49]	chr11	979738	2	UTR3	UTR3:EXON_MRNA	HYOU1	ENSG00000149428.19	ENST00000617285.5:ENST00000614668.4:ENST00000614711.4:ENST00000612687.4:ENST00000652093.1	protein_coding	protein_coding	protein_coding	protein_coding	11	65	2	1.80094	2.3223	2.84366	0.0265942	2.00869e-5	0.120205	4.89041e-4
chr7	100678541	100678614	8428133	0	+	0.616438	(0.59,1]	chr7	643347	3	CDS	CDS:EXON_MRNA	GNB2	ENSG00000172354.10	ENST00000303210.9:ENST00000436220.5:ENST00000424361.5:ENST00000419828.5:ENST00000427895.5:ENST00000393926.5:ENST00000393924.1:ENST00000469287.5:ENST00000470354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	55	2	2.30623	2.322145	2.33806	0.0170607	0.00632881	0.0896731	0.0448545
chr7	92112152	92112246	8922085	0	-	0.287234	[0,0.29]	chr7	680629	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	18	2	1.65198	2.32205	2.99212	0.0369328	0.0069187	0.151225	0.0473262
chr2	74462863	74462963	2742897	0	-	0.6	(0.59,1]	chr2	244414	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MOGS	ENSG00000115275.14	ENST00000448666.7:ENST00000409065.5:ENST00000462189.1:ENST00000462443.2:ENST00000649601.1:ENST00000649075.1:ENST00000649854.1:ENST00000648810.1:ENST00000647915.1:ENST00000647771.1:ENST00000647723.1:ENST00000452063.7:ENST00000648768.1:ENST00000649777.1:ENST00000647753.1:ENST00000650523.1:ENST00000489655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	83	2	1.79051	2.322025	2.85354	0.0396851	2.78748e-4	0.161349	0.00412391
chr7	127371616	127371714	9057496	0	-	0.295918	(0.29,0.33]	chr7	691091	17	UTR3	UTR3:EXON_MRNA:INTRON	ZNF800	ENSG00000048405.10	ENST00000485577.1:ENST00000265827.8:ENST00000393313.5:ENST00000393312.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	37	2	1.84264	2.32198	2.80132	0.0081759	4.91954e-4	0.0532189	0.00690147
chr5	43292555	43292637	6560184	0	-	0.414634	(0.39,0.42]	chr5	508339	2	CDS	CDS:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	21	97	2	2.14299	2.321915	2.50084	0.00102642	3.42809e-5	0.0121443	7.54811e-4
chr7	6024486	6024579	8662409	0	-	0.505376	(0.49,0.53]	chr7	662531	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1:ENST00000490523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	128	2	2.08862	2.321895	2.55517	9.10941e-4	1.41852e-5	0.0110519	3.66618e-4
chr8	18066974	18067073	9732911	0	-	0.484848	(0.455,0.49]	chr8	736311	12	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637244.1:ENST00000637857.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10:ENST00000519468.5:ENST00000519545.6:ENST00000637718.1:ENST00000636299.1:ENST00000637603.1:ENST00000523593.6:ENST00000636823.1:ENST00000635769.1:ENST00000523744.2:ENST00000636435.1:ENST00000637638.1:ENST00000636828.1:ENST00000637202.1:ENST00000636715.1:ENST00000637561.1:ENST00000518087.7:ENST00000636537.1:ENST00000637872.1:ENST00000637805.1:ENST00000636269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	67	2	1.64975	2.321815	2.99388	0.0228527	1.27969e-5	0.108215	3.36748e-4
chr2	177220885	177220984	2228552	0	+	0.383838	(0.36,0.39]	chr2	203394	17	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	47	2	2.2621000000000002	2.32161	2.38112	0.0031815	9.03509e-4	0.0279343	0.0102771
chr16	46660571	46660651	15927119	0	-	0.3875	(0.36,0.39]	chr16	1277398	1	CDS	CDS:UTR3:EXON_MRNA	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.80227	2.32158	2.84089	0.0128123	0.0123074	0.0719798	0.070688
chrX	151973505	151973599	19267770	0	-	0.542553	(0.53,0.59]	chrX	1636824	10	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	44	2	2.2732	2.321555	2.36991	0.00501452	0.00369236	0.0370872	0.030936
chr1	46316584	46316680	178677	0	+	0.364583	(0.36,0.39]	chr1	23178	1	UTR3	UTR3:EXON_MRNA	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000496387.5:ENST00000460947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	127	2	2.29903	2.3215500000000002	2.34407	7.48716e-5	4.52943e-5	0.00157457	9.45966e-4
chr2	112579483	112579533	2849004	0	-	0.38	(0.36,0.39]	chr2	254212	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000207383.1	ENST00000384653.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	50	191	2	1.90518	2.321495	2.73781	2.86995e-4	6.91986e-7	0.00422471	3.25461e-5
chr6	33313303	33313390	7669345	0	-	0.712644	(0.59,1]	chr6	587587	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TAPBP	ENSG00000231925.12	ENST00000434618.7:ENST00000475304.5:ENST00000489157.5:ENST00000426633.6:ENST00000480730.5:ENST00000437116.2:ENST00000456592.3:ENST00000467025.1:ENST00000476333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	87	2	2.24689	2.32149	2.39609	0.00890458	0.00154869	0.0565003	0.0164839
chr12	869008	869104	12681245	0	+	0.479167	(0.455,0.49]	chr12	984068	13	CDS	CDS:EXON_MRNA:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	28	2	2.12994	2.321275	2.51261	0.0304832	0.00280343	0.130204	0.0242354
chr12	62335890	62335990	12913823	0	+	0.46	(0.455,0.49]	chr12	1006428	8	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	2.12994	2.321275	2.51261	0.0304832	0.00280343	0.130204	0.0242354
chr11	73676128	73676226	12457770	0	-	0.397959	(0.39,0.42]	chr11	968371	6	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.89968	2.3210550000000003	2.74243	0.0298458	0.00369167	0.130016	0.030936
chr21	8393333	8393432	18041463	0	+	0.727273	(0.59,1]	chr21	1530861	45	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	6050	60596	2	2.0457	2.32091	2.59612	7.92873e-5	2.41277e-6	0.00150306	9.25552e-5
chr2	28800384	28800482	1702902	0	+	0.336735	(0.33,0.36]	chr2	167042	12	UTR3	UTR3:EXON_MRNA:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	21	2	2.16995	2.32079	2.47163	0.0129725	0.0124739	0.0724783	0.0713206
chr4	88521189	88521285	5523024	0	-	0.322917	(0.29,0.33]	chr4	442325	3	UTR3	UTR3:EXON_MRNA	PYURF:PIGY	ENSG00000145337.5:ENSG00000255072.2	ENST00000273968.5:ENST00000527353.2	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	2.27411	2.3207649999999997	2.36742	0.0147368	0.00686811	0.0801529	0.0468903
chr3	179624040	179624137	3928916	0	+	0.247423	[0,0.29]	chr3	330265	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000482604.5:ENST00000480374.1:ENST00000473500.5:ENST00000471112.1:ENST00000476587.1:ENST00000493716.1:ENST00000680692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	23	2	1.94841	2.320745	2.69308	0.0427374	0.00137675	0.168094	0.0142677
chr8	128101071	128101163	9615836	0	+	0.532609	(0.53,0.59]	chr8	728754	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.12	ENST00000667305.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000662410.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657449.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000653853.1:ENST00000523190.6:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000670535.1:ENST00000670009.1:ENST00000668351.1:ENST00000657682.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1:ENST00000665175.1:ENST00000667630.1	lncRNA	lncRNA	lncRNA	lncRNA	8	50	2	2.30988	2.320735	2.33159	0.00643853	0.00153017	0.0452349	0.0155189
chr11	3771747	3771837	12238707	0	-	0.488889	(0.455,0.49]	chr11	945655	1	CDS	CDS:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	2.23479	2.320715	2.40664	0.0209335	0.0123662	0.101282	0.0705839
chr4	38688681	38688778	4796570	0	+	0.57732000000000006	(0.53,0.59]	chr4	395562	2	CDS	CDS:EXON_MRNA	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	1.78041	2.320715	2.86102	0.0407112	0.0017805	0.163285	0.0172974
chr7	143390767	143390853	8581674	0	+	0.581395	(0.53,0.59]	chr7	655868	2	UTR3	UTR3:EXON_MRNA	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6	protein_coding	protein_coding	protein_coding	protein_coding	11	63	2	2.06261	2.32064	2.57867	0.00198261	0.00180717	0.0195088	0.0175179
chr10	97432800	97432892	11212393	0	+	0.48913	(0.455,0.49]	chr10	852981	4	UTR3	UTR3:EXON_MRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6	protein_coding	protein_coding	protein_coding	protein_coding	8	40	2	2.19092	2.32053	2.45014	0.00397453	0.00318608	0.0322851	0.0267172
chr12	22687514	22687612	12786278	0	+	0.387755	(0.36,0.39]	chr12	993067	27	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	16	67	2	1.92514	2.32046	2.71578	0.00377419	5.05085e-5	0.0315798	0.00103686
chrX	136873741	136873841	19250710	0	-	0.38	(0.36,0.39]	chrX	1635446	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000496459.2:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	28	2	1.43858	2.32028	3.20198	0.0581529	4.4092e-4	0.199345	0.0062930699999999996
chr19	7962891	7962989	17447939	0	-	0.72449	(0.59,1]	chr19	1458189	14	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	3	34	2	2.11894	2.32022	2.5215	0.032241	0.0293157	0.135671	0.128478
chr7	5529294	5529394	8659496	0	-	0.59	(0.53,0.59]	chr7	662124	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6:ENST00000645025.1:ENST00000480301.1:ENST00000443528.5:ENST00000417101.2:ENST00000414620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	53	302	2	2.04215	2.32021	2.59827	1.13997e-4	3.11115e-6	0.00202297	1.15321e-4
chr5	138556515	138556558	6862356	0	-	0.465116	(0.455,0.49]	chr5	525189	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000512328.1:ENST00000507115.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	40	2	1.80165	2.32012	2.83859	0.00883114	0.00215336	0.0563279	0.0208395
chr18	2601395	2601485	16726308	0	+	0.322222	(0.29,0.33]	chr18	1379637	1	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	2.14085	2.320105	2.49936	0.0117968	0.00917022	0.0686664	0.0580029
chr11	61326778	61326835	12404182	0	-	0.491228	(0.49,0.53]	chr11	960256	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	46	2	1.85272	2.319775	2.78683	0.0211739	2.60854e-4	0.101864	0.00391395
chr7	74196453	74196549	8334075	0	+	0.541667	(0.53,0.59]	chr7	634971	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	48	2	1.39693	2.319715	3.2425	0.0401297	2.6381e-4	0.153343	0.00427022
chr1	32775794	32775887	923472	0	-	0.580645	(0.53,0.59]	chr1	97310	7	UTR3	UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000469100.5:ENST00000373477.9:ENST00000490826.1:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	40	2	2.16037	2.3196149999999998	2.47886	0.0254312	0.00138105	0.117089	0.014307
chr9	89311292	89311351	10349686	0	+	0.508475	(0.49,0.53]	chr9	778989	1	CDS_START	CDS_START:CDS:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	1.76393	2.319505	2.87508	0.0279906	4.55699e-4	0.123926	0.00645757
chr20	56367970	56368069	17834382	0	+	0.424242	(0.42,0.455]	chr20	1507875	18	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	10	49	2	2.23503	2.31945	2.40387	0.00231472	0.00155841	0.0219615	0.0156889
chr11	33710026	33710125	12344213	0	-	0.494949	(0.49,0.53]	chr11	953994	72	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1:ENST00000652086.1:ENST00000426650.7:ENST00000533403.6:ENST00000415002.7:ENST00000445143.6:ENST00000437761.6:ENST00000351554.8:ENST00000527577.5:ENST00000643183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	39	2	2.21413	2.31922	2.42431	0.00995539	0.0018555	0.0621728	0.0178545
chr6	31835002	31835101	7116758	0	+	0.707071	(0.59,1]	chr6	546213	5	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5	lncRNA	lncRNA	lncRNA	lncRNA	37	381	2	1.84957	2.319105	2.78864	0.00173942	6.94396e-6	0.0179345	2.04752e-4
chr22	20119023	20119085	18297442	0	+	0.483871	(0.455,0.49]	chr22	1553196	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000467920.1:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	49	2	1.67674	2.319065	2.96139	0.0117851	2.95549e-4	0.0690332	0.00467597
chr1	149841157	149841193	1286940	0	-	0.611111	(0.59,1]	chr1	127831	1	UTR5	UTR5:EXON_MRNA	H3C14	ENSG00000203811.1	ENST00000369158.1	protein_coding	protein_coding	protein_coding	protein_coding	9	102	2	2.09833	2.3190549999999996	2.53978	0.0150311	4.84679e-4	0.0816517	0.0068113
chr1	32782471	32782539	923543	0	-	0.470588	(0.455,0.49]	chr1	97329	2	CDS	CDS:UTR3:EXON_MRNA	YARS1	ENSG00000134684.12	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000487404.5:ENST00000478828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	34	2	1.79605	2.319035	2.84202	0.0427708	5.41187e-4	0.168094	0.00689416
chr19	10318228	10318300	17459313	0	-	0.597222	(0.59,1]	chr19	1460726	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4:ENST00000615032.4:ENST00000585935.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	41	2	1.79051	2.318995	2.84748	0.0396851	0.0124539	0.161349	0.0712518
chr16	88723920	88723971	16074505	0	-	0.54902	(0.53,0.59]	chr16	1291672	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000566414.1:ENST00000474606.1:ENST00000475586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	49	2	2.18736	2.31894	2.45052	0.00355092	0.00311033	0.0300049	0.0263966
chr18	9923919	9923970	16755816	0	+	0.588235	(0.53,0.59]	chr18	1381759	1	EXON_SMALL	EXON_SMALL:INTRON	VAPA:RNA5SP450	ENSG00000101558.14:ENSG00000223138.1	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5:ENST00000411206.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene:protein_coding	rRNA_pseudogene:protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	49	2	2.18736	2.31894	2.45052	0.00355092	0.00311033	0.0300049	0.0263966
chr7	135674360	135674458	8553486	0	+	0.397959	(0.39,0.42]	chr7	652937	3	UTR3	UTR3:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	85	2	2.03728	2.318375	2.59947	0.00508196	2.19747e-5	0.038965	5.24103e-4
chr7	99460154	99460223	8947130	0	-	0.434783	(0.42,0.455]	chr7	683044	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5MF-PTCD1:PTCD1:ATP5MF	ENSG00000248919.7:ENSG00000106246.18:ENSG00000241468.8	ENST00000413834.5:ENST00000430982.1:ENST00000437572.1:ENST00000451138.1:ENST00000466753.1:ENST00000414062.5:ENST00000449683.5:ENST00000292475.8:ENST00000359832.8:ENST00000491560.1:ENST00000488775.5:ENST00000394186.3:ENST00000481899.1:ENST00000523680.1:ENST00000485011.1:ENST00000524321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	57	2	1.82578	2.318305	2.81083	0.00787944	1.05629e-4	0.0514996	0.00204591
chr6	67888746	67888844	7784148	0	-	0.561224	(0.53,0.59]	chr6	596229	19	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	34	196	2	1.89984	2.318275	2.73671	6.39858e-4	3.83482e-6	0.00794883	1.35853e-4
chr2	55049929	55050021	2666890	0	-	0.793478	(0.59,1]	chr2	238530	3	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RTN4	ENSG00000115310.18	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000402434.6:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	10	97	2	1.74761	2.31805	2.88849	0.011962800000000001	6.26999e-4	0.0700164	0.00831935
chr5	175526928	175527025	6397793	0	+	0.319588	(0.29,0.33]	chr5	496826	3	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	9	36	2	1.99403	2.318015	2.642	0.0202925	3.11949e-4	0.098158	0.00449966
chr1	19117351	19117414	876053	0	-	0.492063	(0.49,0.53]	chr1	90039	2	CDS	CDS:UTR5:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.99044	2.31786	2.64528	0.0435903	0.0202736	0.170594	0.0984041
chr7	121244269	121244338	8496304	0	+	0.550725	(0.53,0.59]	chr7	648418	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5:ENST00000466055.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	38	2	2.26097	2.3174799999999998	2.37399	0.0126178	0.00389622	0.0717599	0.0313006
chr2	24067673	24067761	2555656	0	-	0.272727	[0,0.29]	chr2	229428	2	UTR3	UTR3:EXON_MRNA	SF3B6	ENSG00000115128.7	ENST00000233468.5	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	2.0001	2.317475	2.63485	0.0227161	7.34761e-4	0.107633	0.00880003
chr2	206126538	206126611	3132982	0	-	0.452055	(0.42,0.455]	chr2	276956	1	CDS	CDS:EXON_MRNA	NDUFS1	ENSG00000023228.14	ENST00000233190.11:ENST00000455934.6:ENST00000423725.5:ENST00000457011.5:ENST00000440274.5:ENST00000432169.5:ENST00000449699.5	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.72071	2.31722	2.91373	0.0499984	0.00892357	0.179758	0.0567495
chr9	111422133	111422200	10798791	0	-	0.447761	(0.42,0.455]	chr9	817904	1	CDS	CDS:EXON_MRNA	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.19674	2.317035	2.43733	0.0254904	0.0103896	0.117089	0.0640167
chr20	50890728	50890825	18006289	0	-	0.42268	(0.42,0.455]	chr20	1526241	9	UTR3	UTR3:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.99701	2.31683	2.63665	0.0235036	0.0048172	0.111072	0.0365653
chr3	196830279	196830378	3990198	0	+	0.313131	(0.29,0.33]	chr3	336202	20	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	2.14426	2.31656	2.48886	0.0142448	0.0055888	0.077929	0.0419759
chr12	120438126	120438226	13116043	0	+	0.67	(0.59,1]	chr12	1023742	1	CDS_START	CDS_START:CDS:EXON_MRNA	COX6A1:AL021546.6	ENSG00000111775.3:ENSG00000111780.8	ENST00000550009.1:ENST00000229379.3:ENST00000551806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	125	2	1.8401	2.31644	2.79278	0.00541352	4.18316e-4	0.0397441	0.00611538
chr11	46762975	46763043	12383688	0	-	0.382353	(0.36,0.39]	chr11	956060	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	1.89872	2.3163299999999998	2.73394	0.056542	0.00131831	0.19417	0.0143836
chr8	53967036	53967133	9832419	0	-	0.329897	(0.29,0.33]	chr8	743907	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	29	2	1.99415	2.316055	2.63796	0.0333928	6.9438e-4	0.140128	0.00846751
chr1	235110604	235110701	1560078	0	-	0.412371	(0.39,0.42]	chr1	156012	14	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	37	171	2	1.99629	2.31604	2.63579	4.93524e-4	2.26079e-6	0.00692257	7.95912e-5
chr10	72274316	72274368	11111165	0	+	0.730769	(0.59,1]	chr10	845353	1	CDS	CDS:UTR5:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	62	2	1.73729	2.316015	2.89474	0.0303312	0.00190546	0.129874	0.018313
chr3	182857877	182857952	3944272	0	+	0.28	[0,0.29]	chr3	331168	1	CDS	CDS:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000498086.5	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	1.80685	2.31564	2.82443	0.0438772	0.0180803	0.163572	0.0920398
chr19	38831077	38831166	17561000	0	-	0.505618	(0.49,0.53]	chr19	1475045	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ECH1:AC104534.3	ENSG00000104823.9:ENSG00000268083.5	ENST00000221418.9:ENST00000601778.5:ENST00000598707.5:ENST00000594164.5:ENST00000600178.5:ENST00000601060.5:ENST00000598316.5:ENST00000595470.1:ENST00000594769.5:ENST00000602021.1:ENST00000596118.1:ENST00000597089.5:ENST00000597205.1:ENST00000597805.1:ENST00000601094.5:ENST00000595567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	1.76393	2.315515	2.8671	0.0279906	0.0100489	0.123926	0.0623334
chr19	41307505	41307599	17334343	0	+	0.340426	(0.33,0.36]	chr19	1436801	11	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000392006.8	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.28792	2.315515	2.34311	0.0239159	0.00300559	0.112531	0.0256959
chrM	10569	10666	19377246	0	+	0.402062	(0.39,0.42]	chrM	1649823	1	CDS	CDS:EXON_MRNA	MT-ND4L	ENSG00000212907.2	ENST00000361335.1	protein_coding	protein_coding	protein_coding	protein_coding	183	744	2	2.2871	2.315515	2.34393	2.04833e-6	1.55634e-6	7.30849e-5	6.3916e-5
chr6	119348881	119348965	7921028	0	-	0.619048	(0.59,1]	chr6	606539	6	CDS	CDS:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	5	47	2	1.63662	2.3155	2.99438	0.0410169	0.00776449	0.163285	0.050813
chr12	24812917	24813017	13255685	0	-	0.32	(0.29,0.33]	chr12	1038842	30	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	15	46	2	1.5858	2.315185	3.04457	0.0110459	1.09203e-4	0.0665375	0.00209994
chr20	49174194	49174269	18000014	0	-	0.36	(0.33,0.36]	chr20	1525647	1	UTR5	UTR5:EXON_MRNA:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2:ENST00000456866.2	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	2.07736	2.3151349999999997	2.55291	0.0442037	5.05339e-4	0.172163	0.00657874
chrX	302081	302179	18549183	0	+	0.632653	(0.59,1]	chrX	1585413	29	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.24397	2.315055	2.38614	0.0206682	0.0128707	0.0997234	0.0725185
chr3	10150841	10150939	3302452	0	+	0.336735	(0.33,0.36]	chr3	290668	10	UTR3	UTR3:EXON_MRNA	VHL	ENSG00000134086.8	ENST00000256474.3:ENST00000345392.2	protein_coding	protein_coding	protein_coding	protein_coding	10	38	2	2.01701	2.31492	2.61283	0.00697043	7.60348e-4	0.0474694	0.00908558
chr1	151176903	151176983	1292177	0	-	0.525	(0.49,0.53]	chr1	128992	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	VPS72	ENSG00000163159.14	ENST00000368892.9:ENST00000354473.4:ENST00000496809.5:ENST00000640458.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	18	2	1.90685	2.314685	2.72252	0.0534351	0.0161474	0.184995	0.0860154
chr2	191836220	191836319	3089799	0	-	0.515152	(0.49,0.53]	chr2	273160	3	CDS	CDS:EXON_MRNA	CAVIN2	ENSG00000168497.5	ENST00000304141.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.90685	2.314685	2.72252	0.0534351	0.0161474	0.184995	0.0860154
chr19	54188230	54188330	17627811	0	-	0.64	(0.59,1]	chr19	1488050	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000414665.5:ENST00000453320.1:ENST00000464098.5:ENST00000474910.5:ENST00000491216.5:ENST00000495968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	65	2	2.24689	2.314495	2.3821	0.00890458	0.00554753	0.0565003	0.0417049
chr12	6538238	6538306	12713628	0	+	0.573529	(0.53,0.59]	chr12	986667	2	UTR3	UTR3:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	64	377	2	2.10046	2.314485	2.52851	8.28541e-5	1.9772e-6	0.00171126	7.08513e-5
chr2	74172668	74172752	2740401	0	-	0.392857	(0.39,0.42]	chr2	243905	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	16	2	2.13132	2.314165	2.49701	0.0339607	0.02908	0.141431	0.127648
chr2	175926973	175927073	3028107	0	-	0.42	(0.39,0.42]	chr2	268146	32	UTR3	UTR3:EXON_MRNA	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.13132	2.314165	2.49701	0.0339607	0.02908	0.141431	0.127648
chr4	118752792	118752888	5618141	0	-	0.416667	(0.39,0.42]	chr4	447623	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5:ENST00000514561.5:ENST00000419654.6:ENST00000511033.1:ENST00000509818.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.13132	2.314165	2.49701	0.0339607	0.02908	0.141431	0.127648
chr5	122020444	122020533	6184697	0	+	0.404494	(0.39,0.42]	chr5	482282	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRFBP1	ENSG00000151304.6	ENST00000339397.5:ENST00000504881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.13132	2.314165	2.49701	0.0339607	0.02908	0.141431	0.127648
chr7	4770943	4771042	8109668	0	+	0.40404	(0.39,0.42]	chr7	619657	86	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.13132	2.314165	2.49701	0.0339607	0.02908	0.141431	0.127648
chr5	62386065	62386164	5993804	0	+	0.30303	(0.29,0.33]	chr5	469639	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-95I19.4:KIF2A	ENSG00000288643.1:ENSG00000068796.19	ENST00000509663.2:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000674752.1:ENST00000675534.1:ENST00000675387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	30	2	2.28605	2.31404	2.34203	0.010113	0.00224889	0.0626311	0.0207945
chr1	231363947	231364045	1548239	0	-	0.306122	(0.29,0.33]	chr1	155129	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EGLN1:RP5-876B10.7	ENSG00000135766.9:ENSG00000287856.1	ENST00000667629.1:ENST00000366641.4:ENST00000653908.1:ENST00000653198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	12	2	2.24226	2.3140099999999997	2.38576	0.0439193	0.0306054	0.163572	0.130226
chr12	51240788	51240870	12876206	0	+	0.329268	(0.29,0.33]	chr12	1000603	5	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000552173.5:ENST00000549555.5:ENST00000425012.6:ENST00000412716.8:ENST00000439799.6:ENST00000551919.5:ENST00000549041.1:ENST00000549732.6:ENST00000604900.5:ENST00000436900.2:ENST00000551534.5:ENST00000552459.2:ENST00000549497.5:ENST00000551313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	12	2	2.24226	2.3140099999999997	2.38576	0.0439193	0.0306054	0.163572	0.130226
chr3	33090902	33090999	4111911	0	-	0.309278	(0.29,0.33]	chr3	343554	6	UTR3	UTR3:EXON_MRNA:INTRON	GLB1:TMPPE	ENSG00000170266.16:ENSG00000188167.9	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1:ENST00000416695.6:ENST00000342462.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	12	2	2.24226	2.3140099999999997	2.38576	0.0439193	0.0306054	0.163572	0.130226
chr3	161251209	161251309	3857936	0	+	0.28	[0,0.29]	chr3	327668	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NMD3	ENSG00000169251.13	ENST00000472947.5:ENST00000351193.7:ENST00000460469.1	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.94841	2.3139700000000003	2.67953	0.0427374	0.0046416	0.168094	0.0354333
chr12	54238261	54238361	13342909	0	-	0.44	(0.42,0.455]	chr12	1049602	69	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	17	80	2	1.92973	2.31376	2.69779	0.00239734	5.67322e-5	0.0225609	0.00114271
chr2	47476366	47476434	1785251	0	+	0.426471	(0.42,0.455]	chr2	172517	1	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	39	2	1.87571	2.31375	2.75179	0.0138685	8.66526e-4	0.0760883	0.0100799
chr1	173488339	173488434	548626	0	+	0.294737	(0.29,0.33]	chr1	58305	6	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	25	86	2	2.0956	2.3137100000000004	2.53182	7.79868e-4	2.75607e-5	0.00973078	6.31638e-4
chr7	143306626	143306723	8581150	0	+	0.329897	(0.29,0.33]	chr7	655693	17	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.66607	2.31348	2.96089	0.0424383	5.56633e-4	0.160073	0.0076748
chr10	43385986	43386079	11461752	0	-	0.247312	[0,0.29]	chr10	873953	5	UTR3	UTR3:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.73193	2.31335	2.89477	0.0218934	0.00179424	0.104942	0.0174091
chr20	2655328	2655420	17652858	0	+	0.5	(0.49,0.53]	chr20	1492186	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NOP56	ENSG00000101361.17	ENST00000651302.1:ENST00000329276.10:ENST00000494697.5:ENST00000469588.5:ENST00000445139.1:ENST00000460258.5:ENST00000496775.5:ENST00000480992.5:ENST00000484998.5:ENST00000612233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	43	2	2.2359	2.313325	2.39075	0.00449268	0.00224283	0.0343656	0.0213415
chr3	47918718	47918779	4164447	0	-	0.57377	(0.53,0.59]	chr3	348585	1	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1:ENST00000423088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	1.96733	2.313135	2.65894	0.022694	0.0193255	0.105117	0.0943643
chr11	117168092	117168191	12154346	0	+	0.232323	[0,0.29]	chr11	936189	5	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	28	2	2.28041	2.313105	2.3458	0.0116272	0.00240042	0.0685835	0.0217482
chr22	21807754	21807846	18442839	0	-	0.467391	(0.455,0.49]	chr22	1572549	2	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	8	41	2	1.61715	2.31293	3.00871	0.0342264	2.11527e-4	0.142155	0.00328766
chr13	25340034	25340134	13647957	0	+	0.45	(0.42,0.455]	chr13	1075928	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000381718.7:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	2.05515	2.31283	2.57051	0.0265466	0.017518	0.120071	0.0924156
chr4	26433265	26433363	4766703	0	+	0.44898	(0.42,0.455]	chr4	394281	24	UTR3	UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000355476.8:ENST00000342320.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.05515	2.31283	2.57051	0.0265466	0.017518	0.120071	0.0924156
chr16	9103471	9103570	15534165	0	+	0.323232	(0.29,0.33]	chr16	1230410	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	C16orf72	ENSG00000182831.12	ENST00000327827.12:ENST00000574285.2	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.99403	2.312825	2.63162	0.0202925	0.00179843	0.098158	0.0174371
chr17	42310569	42310649	16228135	0	+	0.6125	(0.59,1]	chr17	1312854	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000546010.6:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	74	2	2.08167	2.31262	2.54357	0.00939499	0.00276959	0.0590912	0.0240579
chr17	81932482	81932581	16710114	0	-	0.555556	(0.53,0.59]	chr17	1377895	2	UTR3	UTR3:EXON_MRNA	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13	protein_coding	protein_coding	protein_coding	protein_coding	12	73	2	2.2732	2.31255	2.3519	0.00369236	3.49762e-4	0.030936	0.0049086
chr2	178038901	178038952	2231311	0	+	0.372549	(0.36,0.39]	chr2	203615	1	EXON_SMALL	EXON_SMALL	RNU6-629P	ENSG00000206788.1	ENST00000384061.1	snRNA	snRNA	snRNA	snRNA	13	56	2	2.1181	2.3124000000000002	2.5067	0.00385216	2.05751e-4	0.032128	0.00322749
chr12	56110558	56110625	12898066	0	+	0.447761	(0.42,0.455]	chr12	1004157	1	CDS	CDS:EXON_MRNA	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11:ENST00000552528.1:ENST00000552266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	1.43354	2.31216	3.19078	0.0450749	0.00310864	0.167319	0.0274272
chrX	134426219	134426318	18863540	0	+	0.464646	(0.455,0.49]	chrX	1607356	10	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.78554	2.312065	2.83859	0.0178667	0.00215336	0.0936098	0.0208395
chr2	65255544	65255619	1854241	0	+	0.426667	(0.42,0.455]	chr2	175964	1	CDS	CDS:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	8	46	2	1.63927	2.31187	2.98447	0.0455517	7.73648e-5	0.175554	0.00147139
chr4	39780414	39780513	4802031	0	+	0.383838	(0.36,0.39]	chr4	396197	21	UTR3	UTR3:EXON_MRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.16717	2.311865	2.45656	0.0152504	0.0100637	0.0828908	0.0624019
chr5	140194465	140194565	6252746	0	+	0.58	(0.53,0.59]	chr5	487337	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6:ENST00000644078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	40	2	1.88327	2.311505	2.73974	0.0298124	9.00802e-4	0.129773	0.0102618
chr1	150814076	150814157	1290641	0	-	0.580247	(0.53,0.59]	chr1	128529	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6:ENST00000515192.5:ENST00000505755.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	28	2	1.90953	2.311355	2.71318	0.0517711	0.00340745	0.193577	0.0283456
chr20	44501148	44501224	17982008	0	-	0.565789	(0.53,0.59]	chr20	1523372	2	CDS	CDS:EXON_MRNA	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	4	28	2	1.90953	2.311355	2.71318	0.0517711	0.00340745	0.193577	0.0283456
chr11	5301946	5302045	12241106	0	-	0.393939	(0.39,0.42]	chr11	946136	1	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	33	2	1.99911	2.31106	2.62301	0.0477207	6.74579e-4	0.17993	0.00826103
chr5	79284327	79284426	6662405	0	-	0.393939	(0.39,0.42]	chr5	514361	3	EXON_PSEUDO	EXON_PSEUDO	RPS3AP20	ENSG00000213757.3	ENST00000474167.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	33	2	1.99911	2.31106	2.62301	0.0477207	6.74579e-4	0.17993	0.00826103
chr1	219987141	219987228	1510863	0	-	0.528736	(0.49,0.53]	chr1	151017	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	2.06004	2.3109349999999997	2.56183	0.0261296	0.00373365	0.118976	0.0303255
chr1	25360705	25360802	104292	0	+	0.402062	(0.39,0.42]	chr1	12231	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	50	2	2.02663	2.3106999999999998	2.59477	0.0130764	1.97342e-4	0.0729985	0.00313008
chr2	54972767	54972864	2666101	0	-	0.412371	(0.39,0.42]	chr2	238467	7	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5:ENST00000491592.1:ENST00000485749.1:ENST00000402434.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	62	284	2	2.18256	2.31069	2.43882	7.73661e-5	2.18087e-6	0.00162034	7.70264e-5
chr6	32170164	32170260	7664664	0	-	0.583333	(0.53,0.59]	chr6	586104	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	AGPAT1:MIR6721	ENSG00000204310.13:ENSG00000284469.1	ENST00000336984.6:ENST00000395497.5:ENST00000490711.5:ENST00000375104.6:ENST00000395499.5:ENST00000375107.8:ENST00000395496.5:ENST00000617181.1:ENST00000476663.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	6	43	2	1.90953	2.31067	2.71181	0.0517711	3.99651e-4	0.193577	0.0054764
chr2	24018433	24018533	1677519	0	+	0.63	(0.59,1]	chr2	164015	3	EXON_MRNA	EXON_MRNA:INTRON	MFSD2B	ENSG00000205639.12	ENST00000669179.1:ENST00000406420.7:ENST00000338315.6:ENST00000495018.1:ENST00000469562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	127	2	1.70303	2.3105450000000003	2.91806	0.0242764	5.28471e-5	0.114156	0.00107799
chr8	47886079	47886147	9816654	0	-	0.617647	(0.59,1]	chr8	742739	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	6	65	2	2.19905	2.3105200000000004	2.42199	0.0105866	0.00475078	0.0644466	0.0367332
chr10	84560989	84561080	11167548	0	+	0.384615	(0.36,0.39]	chr10	848475	7	EXON_PSEUDO	EXON_PSEUDO	RPS3AP5	ENSG00000178429.9	ENST00000389400.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	37	2	1.73186	2.31052	2.88918	0.00956627	0.00212816	0.0601872	0.0206577
chr19	10317166	10317261	17459301	0	-	0.663158	(0.59,1]	chr19	1460720	11	UTR3	UTR3:EXON_MRNA	CTD-2369P2.12:RAVER1	ENSG00000267303.1:ENSG00000161847.14	ENST00000586529.1:ENST00000617231.5:ENST00000592208.5:ENST00000611074.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	75	2	2.29319	2.310365	2.32754	0.00750123	0.0035583	0.0495953	0.0300503
chr21	33549969	33550068	18101156	0	+	0.464646	(0.455,0.49]	chr21	1534525	6	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	1.98188	2.3103000000000002	2.63872	0.0226804	0.00510378	0.105116	0.0390492
chr8	123357648	123357736	10057257	0	-	0.477273	(0.455,0.49]	chr8	756674	2	CDS	CDS:UTR3:UTR5:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	1.98188	2.3103000000000002	2.63872	0.0226804	0.00510378	0.105116	0.0390492
chr15	41380186	41380282	14886249	0	+	0.270833	[0,0.29]	chr15	1169383	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	39	117	2	2.0876	2.31027	2.53294	1.37532e-4	1.76681e-5	0.0023339	4.84749e-4
chr14	81661716	81661812	14439184	0	+	0.4375	(0.42,0.455]	chr14	1127404	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P2	ENSG00000258841.1	ENST00000553854.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	32	2	1.99701	2.310235	2.62346	0.0235036	0.00164881	0.111072	0.0163523
chr2	70986531	70986630	2728035	0	-	0.444444	(0.42,0.455]	chr2	243102	7	UTR3	UTR3:EXON_MRNA:INTRON	AC007040.11:TEX261	ENSG00000258881.6:ENSG00000144043.12	ENST00000606025.5:ENST00000453130.1:ENST00000272438.9:ENST00000478068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	32	2	1.99701	2.310235	2.62346	0.0235036	0.00164881	0.111072	0.0163523
chr6	7282237	7282336	7586814	0	-	0.464646	(0.455,0.49]	chr6	578692	12	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	36	2	2.26324	2.3102	2.35716	0.00868189	0.00260884	0.0558093	0.0230635
chr7	106248794	106248893	8977846	0	-	0.414141	(0.39,0.42]	chr7	687059	6	UTR3	UTR3:EXON_MRNA	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.13132	2.3102	2.48908	0.02908	0.0101318	0.127648	0.0626311
chr1	6623730	6623830	19580	0	+	0.5	(0.49,0.53]	chr1	3165	22	UTR3	UTR3:EXON_MRNA	PHF13	ENSG00000116273.6	ENST00000377648.5	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.13501	2.309945	2.48488	0.032052	0.0287874	0.133433	0.128869
chr14	23026253	23026318	14528762	0	-	0.523077	(0.49,0.53]	chr14	1138374	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMB5	ENSG00000100804.19	ENST00000555895.5:ENST00000361611.11:ENST00000460922.2:ENST00000493471.2:ENST00000425762.2:ENST00000334454.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.13501	2.309945	2.48488	0.032052	0.0287874	0.133433	0.128869
chr7	6402921	6403016	8114067	0	+	0.484211	(0.455,0.49]	chr7	620430	6	UTR3	UTR3:EXON_MRNA	RAC1	ENSG00000136238.18	ENST00000348035.9	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	2.26324	2.3098400000000003	2.35644	0.00868189	0.00555877	0.0558093	0.0405952
chr4	82824554	82824614	5496478	0	-	0.433333	(0.42,0.455]	chr4	440171	1	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1	protein_coding	protein_coding	protein_coding	protein_coding	10	56	2	1.87159	2.3094200000000003	2.74725	0.0214479	7.28342e-5	0.102998	0.00139695
chr3	184335268	184335358	3949369	0	+	0.544444	(0.53,0.59]	chr3	332501	5	UTR3	UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000346169.7:ENST00000350481.9:ENST00000342981.8:ENST00000424196.5:ENST00000434061.6:ENST00000676453.1:ENST00000475721.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	27	2	2.16037	2.309405	2.45844	0.0254312	0.00930921	0.117089	0.0587563
chr11	61801813	61801912	12405919	0	-	0.383838	(0.36,0.39]	chr11	960580	23	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	26	103	2	1.80366	2.3094	2.81514	0.00256386	2.23915e-6	0.0229156	8.69488e-5
chr1	631651	631748	485	0	+	0.525773	(0.49,0.53]	chr1	106	7	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	36	2	1.46766	2.30905	3.15044	0.0523669	4.32676e-4	0.194793	0.00583708
chr14	55062971	55063059	14298027	0	+	0.568182	(0.53,0.59]	chr14	1117542	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000554364.1:ENST00000622254.1:ENST00000553976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	2.0693	2.3088699999999998	2.54844	0.0160468	0.00663226	0.0860154	0.0461575
chr16	3665970	3666044	15830557	0	-	0.527027	(0.49,0.53]	chr16	1263627	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	45	2	1.46766	2.308705	3.14975	0.0523669	8.97896e-5	0.194793	0.0016645
chr10	68983792	68983890	11093415	0	+	0.357143	(0.33,0.36]	chr10	843302	11	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	11	41	2	1.95788	2.308495	2.65911	0.00652477	4.11639e-4	0.0455786	0.00604771
chr12	57233748	57233826	12902146	0	+	0.666667	(0.59,1]	chr12	1005211	1	CDS	CDS:UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000555634.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1:ENST00000556798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.19052	2.308455	2.42639	0.0409084	0.0237927	0.163285	0.109413
chr20	62938146	62938199	17863357	0	+	0.754717	(0.59,1]	chr20	1510440	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GID8	ENSG00000101193.8	ENST00000266069.5:ENST00000497101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	34	2	2.19052	2.308455	2.42639	0.0409084	0.0237927	0.163285	0.109413
chr5	10262480	10262549	5874645	0	+	0.492754	(0.49,0.53]	chr5	461883	1	CDS	CDS:EXON_MRNA	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000280326.9:ENST00000515676.5:ENST00000506600.1:ENST00000511995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	52	2	2.25248	2.30834	2.3642	0.00248477	0.00144423	0.0223997	0.0155183
chr1	6185699	6185796	842291	0	-	0.484536	(0.455,0.49]	chr1	84886	8	UTR3	UTR3:EXON_MRNA:INTRON	RP1-120G22.12:RPL22	ENSG00000285629.1:ENSG00000116251.11	ENST00000484532.6:ENST00000234875.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	1.61991	2.308305	2.9967	0.0447186	0.00650423	0.166115	0.0454205
chr15	59116689	59116768	14959915	0	+	0.468354	(0.455,0.49]	chr15	1175700	1	CDS	CDS:EXON_MRNA	CCNB2	ENSG00000157456.8	ENST00000288207.7:ENST00000559622.5:ENST00000621385.1:ENST00000559301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	1.61991	2.308305	2.9967	0.0447186	0.00650423	0.166115	0.0454205
chr6	30704214	30704313	7659039	0	-	0.525253	(0.49,0.53]	chr6	584223	7	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	8	44	2	2.21413	2.308305	2.40248	0.00995539	0.00107652	0.0621728	0.0118238
chr2	135782887	135782985	2083394	0	+	0.295918	(0.29,0.33]	chr2	195479	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	28	2	1.97847	2.3083	2.63813	0.00803229	0.00619596	0.0528968	0.0440912
chr8	143597348	143597447	10145295	0	-	0.686869	(0.59,1]	chr8	762554	6	UTR5	UTR5:EXON_MRNA:INTRON	EEF1D	ENSG00000104529.18	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000618139.3:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000526838.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000524397.5:ENST00000526786.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000531931.1:ENST00000423316.7:ENST00000526710.1:ENST00000532596.5:ENST00000529832.5:ENST00000530306.5:ENST00000530545.5:ENST00000525261.5:ENST00000534804.5:ENST00000524900.1:ENST00000534475.5:ENST00000528303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	165	2	2.16689	2.308295	2.4497	0.00209758	2.54048e-4	0.0204266	0.00382054
chr21	8437837	8437936	18041922	0	+	0.454545	(0.42,0.455]	chr21	1530900	48	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	2171	9648	2	2.15981	2.308125	2.45644	3.54419e-6	1.20372e-7	1.15745e-4	7.3883e-6
chr16	29810289	29810389	15626819	0	+	0.5	(0.49,0.53]	chr16	1239346	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAZ:AC009133.24	ENSG00000103495.14:ENSG00000280607.1	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000616501.4:ENST00000568411.5:ENST00000563012.1:ENST00000568544.5:ENST00000568282.1:ENST00000565777.1:ENST00000562594.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	7	33	2	1.89342	2.30797	2.72252	0.0161474	0.0079839	0.0860154	0.0521676
chr7	6040973	6041055	8662583	0	-	0.536585	(0.53,0.59]	chr7	662569	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5:ENST00000474029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	49	2	1.78041	2.307915	2.83542	0.0407112	1.95776e-4	0.163285	0.00310806
chr11	108472886	108472983	12588787	0	-	0.329897	(0.29,0.33]	chr11	976251	9	UTR3	UTR3:EXON_MRNA	POGLUT3	ENSG00000178202.13	ENST00000434945.6:ENST00000323468.10	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	2.14085	2.3079099999999997	2.47497	0.0117968	8.25434e-4	0.0686664	0.00968876
chr19	3453762	3453839	17202055	0	+	0.584416	(0.53,0.59]	chr19	1413737	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NFIC	ENSG00000141905.19	ENST00000641145.1:ENST00000589123.5:ENST00000395111.7:ENST00000586919.5:ENST00000341919.7:ENST00000443272.3:ENST00000590282.5:ENST00000589537.1:ENST00000589164.1:ENST00000589969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	21	2	2.27113	2.30787	2.34461	0.0457008	0.0178853	0.168044	0.0918323
chr2	31868262	31868360	2588589	0	-	0.561224	(0.53,0.59]	chr2	233052	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.27113	2.30787	2.34461	0.0457008	0.0178853	0.168044	0.0918323
chr3	49100574	49100674	4172465	0	-	0.5	(0.49,0.53]	chr3	350367	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000636018.1:ENST00000637543.1:ENST00000478561.5:ENST00000494838.6:ENST00000470225.6:ENST00000635443.1:ENST00000494767.2:ENST00000635541.1:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	55	2	2.10817	2.30781	2.50745	0.00798134	3.33735e-4	0.0527008	0.00472923
chr12	122092862	122092962	13122631	0	+	0.49	(0.455,0.49]	chr12	1024773	132	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.26324	2.30769	2.35214	0.0455621	0.00868189	0.168044	0.0558093
chr2	189924315	189924415	2274555	0	+	0.47	(0.455,0.49]	chr2	206589	2	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000478197.1:ENST00000495546.1	protein_coding	processed_transcript	protein_coding	processed_transcript	23	102	2	1.95841	2.307675	2.65694	6.56849e-4	7.76094e-5	0.0081065	0.00162479
chr5	146463550	146463631	6281092	0	+	0.493827	(0.49,0.53]	chr5	489543	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000513298.5:ENST00000510724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	53	2	2.16476	2.30766	2.45056	0.00364507	8.30002e-4	0.0306714	0.00973943
chr12	51242947	51243046	12876231	0	+	0.484848	(0.455,0.49]	chr12	1000617	4	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	109	2	2.21106	2.307635	2.40421	3.42381e-4	6.96656e-5	0.00520632	0.0013449
chr5	61159263	61159360	6609667	0	-	0.268041	[0,0.29]	chr5	510906	17	UTR3	UTR3:EXON_MRNA	SMIM15	ENSG00000188725.8	ENST00000339020.8	protein_coding	protein_coding	protein_coding	protein_coding	17	59	2	1.83552	2.307565	2.77961	0.00899051	2.01465e-5	0.0570835	4.90083e-4
chr2	159748403	159748503	2163035	0	+	0.4	(0.39,0.42]	chr2	199192	7	CDS	CDS:EXON_MRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000461582.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	51	2	1.74181	2.3075400000000004	2.87327	0.0245629	6.4732e-5	0.114841	0.00126536
chr1	31907684	31907781	921177	0	-	0.360825	(0.36,0.39]	chr1	96904	14	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	10	41	2	2.04221	2.307495	2.57278	0.00653435	5.85449e-4	0.0456317	0.00793746
chr9	128695339	128695435	10480933	0	+	0.354167	(0.33,0.36]	chr9	790686	8	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.96645	2.30748	2.64851	0.0197415	0.00492353	0.095966	0.0366648
chr16	20780785	20780857	15582841	0	+	0.402778	(0.39,0.42]	chr16	1234762	2	CDS	CDS:EXON_MRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000440284.6:ENST00000562251.5:ENST00000563914.1	protein_coding	protein_coding	protein_coding	protein_coding	9	42	2	2.22707	2.307365	2.38766	0.00574688	0.00119001	0.0426551	0.0128045
chr2	126657799	126657896	2055970	0	+	0.546392	(0.53,0.59]	chr2	192600	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	GYPC	ENSG00000136732.16	ENST00000484700.2:ENST00000459787.1:ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	21	2	2.2596	2.307355	2.35511	0.0445399	0.0185443	0.172163	0.0948733
chr1	100080577	100080659	376744	0	+	0.439024	(0.42,0.455]	chr1	36517	2	CDS	CDS:UTR3:EXON_MRNA	RP4-714D9.5:MFSD14A	ENSG00000283761.1:ENSG00000156875.14	ENST00000638792.1:ENST00000638968.1:ENST00000639040.1:ENST00000639037.1:ENST00000639171.1:ENST00000640238.1:ENST00000640357.1:ENST00000370152.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	2.04415	2.3073300000000003	2.57051	0.0265466	0.0101476	0.120071	0.0627153
chr10	71823896	71823996	11563293	0	-	0.34	(0.33,0.36]	chr10	879992	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PSAP	ENSG00000197746.14	ENST00000394936.8:ENST00000394934.4:ENST00000610929.3:ENST00000633965.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.07736	2.30724	2.53712	0.0442037	0.00766322	0.172163	0.0503696
chr3	42784974	42785073	4142181	0	-	0.333333	(0.33,0.36]	chr3	346309	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP4-613B23.5:HIGD1A	ENSG00000280571.2:ENSG00000181061.14	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	2.07736	2.30724	2.53712	0.0442037	0.00766322	0.172163	0.0503696
chr9	131163081	131163173	10496001	0	+	0.554348	(0.53,0.59]	chr9	793284	2	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000489260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	72	2	2.2614899999999998	2.30724	2.35299	0.00132759	8.09771e-4	0.0139137	0.0100672
chr15	71164369	71164469	15364103	0	-	0.3	(0.29,0.33]	chr15	1213704	162	INTRON	INTRON	THSD4-AS1	ENSG00000259964.7	ENST00000561571.5	lncRNA	lncRNA	lncRNA	lncRNA	5	19	2	1.99415	2.3072	2.62025	0.0333928	0.00573581	0.140128	0.0417422
chr6	33272586	33272627	7121514	0	+	0.390244	(0.39,0.42]	chr6	547497	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS18	ENSG00000231500.7	ENST00000439602.7:ENST00000474973.5:ENST00000474626.5:ENST00000476222.5:ENST00000496813.5:ENST00000490191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	24	2	2.01677	2.307105	2.59744	0.0235818	0.00572981	0.111323	0.0417368
chr5	163443796	163443890	6343429	0	+	0.329787	(0.29,0.33]	chr5	494014	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000509143.1:ENST00000509425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	66	2	1.79223	2.306865	2.8215	0.0151293	8.61126e-6	0.0823648	2.43348e-4
chr10	74119566	74119666	11117663	0	+	0.42	(0.39,0.42]	chr10	846311	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	100	2	2.09165	2.306855	2.52206	0.00104316	2.92546e-5	0.0122719	6.65302e-4
chrX	124051120	124051219	18852062	0	+	0.373737	(0.36,0.39]	chrX	1606208	1	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	2.28639	2.306585	2.32678	0.0193538	0.00768469	0.0943643	0.050396
chr19	47742755	47742850	17363618	0	+	0.526316	(0.49,0.53]	chr19	1441384	15	UTR3	UTR3:EXON_MRNA	EHD2	ENSG00000024422.12	ENST00000263277.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	2.05119	2.3065100000000003	2.56183	0.0360743	0.0261296	0.145024	0.118976
chr3	47918779	47918841	4164448	0	-	0.516129	(0.49,0.53]	chr3	348585	2	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1:ENST00000423088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	2.05119	2.3065100000000003	2.56183	0.0360743	0.0261296	0.145024	0.118976
chr9	87727603	87727703	10347546	0	+	0.47	(0.455,0.49]	chr9	778714	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	CTSL	ENSG00000135047.16	ENST00000678442.1:ENST00000679149.1:ENST00000679157.1:ENST00000676946.1:ENST00000676531.1:ENST00000677935.1:ENST00000677345.1:ENST00000677821.1:ENST00000678752.1:ENST00000677019.1:ENST00000343150.10:ENST00000678367.1:ENST00000677864.1:ENST00000482054.2:ENST00000342020.6:ENST00000677262.1:ENST00000678649.1:ENST00000679141.1:ENST00000676881.1:ENST00000340342.11:ENST00000495822.2:ENST00000677955.1:ENST00000676769.1:ENST00000679030.1:ENST00000678596.1:ENST00000676961.1:ENST00000676576.1:ENST00000678599.1:ENST00000677638.1:ENST00000677615.1:ENST00000679252.1:ENST00000676466.1:ENST00000677349.1:ENST00000677761.1:ENST00000678654.1:ENST00000676480.1:ENST00000678965.1:ENST00000676909.1:ENST00000679028.1:ENST00000678259.1:ENST00000679025.1:ENST00000677523.1:ENST00000375894.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	1.8708	2.3064549999999997	2.74211	0.0324007	0.00330545	0.134751	0.028478
chr1	182383911	182384009	1401215	0	-	0.397959	(0.39,0.42]	chr1	141690	60	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	145	2	1.37499	2.3063000000000002	3.23761	0.00866042	1.5757e-7	0.0557262	8.2754e-6
chr11	110263959	110264050	12597514	0	-	0.461538	(0.455,0.49]	chr11	976577	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000642511.1:ENST00000532118.5:ENST00000528556.5:ENST00000533991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	2.10347	2.306255	2.50904	0.0313707	0.0310515	0.13127	0.131262
chr21	33575595	33575667	18101436	0	+	0.458333	(0.455,0.49]	chr21	1534595	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000457208.5:ENST00000467616.5:ENST00000473102.5:ENST00000484294.5:ENST00000470533.5:ENST00000478183.5:ENST00000465834.5:ENST00000477419.5:ENST00000491794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.10347	2.306255	2.50904	0.0313707	0.0310515	0.13127	0.131262
chr3	17699877	17699977	4064564	0	-	0.49	(0.455,0.49]	chr3	341340	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBC1D5	ENSG00000131374.14	ENST00000253692.11:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000444471.5:ENST00000433533.5:ENST00000481396.5:ENST00000480435.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.10347	2.306255	2.50904	0.0313707	0.0310515	0.13127	0.131262
chr8	54065747	54065813	9833233	0	-	0.484848	(0.455,0.49]	chr8	744048	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LYPLA1	ENSG00000120992.18	ENST00000316963.8:ENST00000618914.4:ENST00000618741.1:ENST00000343231.10:ENST00000519272.5:ENST00000518546.5:ENST00000522007.5:ENST00000519891.5:ENST00000521352.5:ENST00000521898.5:ENST00000519926.5:ENST00000517297.5:ENST00000520896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.10347	2.306255	2.50904	0.0313707	0.0310515	0.13127	0.131262
chr9	128988116	128988186	10482644	0	+	0.485714	(0.455,0.49]	chr9	791097	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.10347	2.306255	2.50904	0.0313707	0.0310515	0.13127	0.131262
chrX	40935569	40935667	19047379	0	-	0.469388	(0.455,0.49]	chrX	1619017	7	EXON_PSEUDO	EXON_PSEUDO	RPS2P55	ENSG00000216866.5	ENST00000397318.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	17	2	2.10347	2.306255	2.50904	0.0313707	0.0310515	0.13127	0.131262
chr12	120465626	120465706	13580814	0	-	0.575	(0.53,0.59]	chr12	1069071	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SRSF9	ENSG00000111786.9	ENST00000229390.8:ENST00000603963.1:ENST00000550458.1:ENST00000546942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	32	2	1.97928	2.30622	2.63316	0.0218546	0.00474401	0.104785	0.0361423
chr22	39521545	39521639	18370796	0	+	0.56383	(0.53,0.59]	chr22	1563265	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATF4	ENSG00000128272.17	ENST00000404241.6:ENST00000674920.3:ENST00000679776.1:ENST00000337304.2:ENST00000675582.2:ENST00000396680.3:ENST00000676346.2:ENST00000680446.1:ENST00000674568.2:ENST00000680748.1:ENST00000674835.2	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	1.97928	2.30622	2.63316	0.0218546	0.00474401	0.104785	0.0361423
chr11	63998233	63998326	11978227	0	+	0.612903	(0.59,1]	chr11	918624	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OTUB1	ENSG00000167770.12	ENST00000422031.6:ENST00000301453.7:ENST00000541478.5:ENST00000535715.5:ENST00000538426.6:ENST00000543004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	25	2	2.28778	2.306165	2.32455	0.0556537	0.0520547	0.193787	0.191528
chr16	2768162	2768261	15494957	0	+	0.565657	(0.53,0.59]	chr16	1227802	68	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000572883.1:ENST00000572721.1:ENST00000573311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	143	2	1.99713	2.3061	2.61507	0.00100515	1.65322e-5	0.0119492	4.1841e-4
chr19	13139482	13139580	17239903	0	+	0.561224	(0.53,0.59]	chr19	1421267	12	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	8	44	2	1.61684	2.305975	2.99511	0.0233353	9.46531e-4	0.110406	0.010681
chr14	23066105	23066203	14529074	0	-	0.459184	(0.455,0.49]	chr14	1138499	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000557515.5:ENST00000262710.5:ENST00000457657.5:ENST00000357481.6:ENST00000338631.10:ENST00000473758.5:ENST00000397341.7:ENST00000555053.5:ENST00000555566.1:ENST00000557039.1:ENST00000555807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	51	2	1.96949	2.30595	2.64241	0.00919557	2.78671e-4	0.0582809	0.00412347
chr11	6486764	6486863	11781878	0	+	0.444444	(0.42,0.455]	chr11	901763	22	INTRON	INTRON	CTD-2010I16.2	ENSG00000283977.1	ENST00000639224.1:ENST00000640959.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	27	2	1.71996	2.3059399999999997	2.89192	0.0542346	0.00157686	0.199653	0.015761
chr21	33535224	33535320	18220664	0	-	0.458333	(0.455,0.49]	chr21	1546422	1	CDS	CDS:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	68	2	1.8731	2.30586	2.73862	0.00299234	1.62714e-4	0.0256001	0.00290162
chrX	1386601	1386701	18925568	0	-	0.62	(0.59,1]	chrX	1612948	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11	protein_coding	protein_coding	protein_coding	protein_coding	24	245	2	2.03176	2.30585	2.57994	0.00145159	5.93756e-5	0.0155886	0.00119141
chr6	33300184	33300283	7669204	0	-	0.616162	(0.59,1]	chr6	587559	6	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	15	151	2	2.21177	2.3057600000000003	2.39975	9.77557e-4	9.15344e-4	0.0116431	0.0104046
chr12	111456156	111456256	13539876	0	-	0.64	(0.59,1]	chr12	1065246	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000468920.2:ENST00000643474.1:ENST00000643694.1:ENST00000551551.1:ENST00000550889.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	95	2	1.85635	2.305735	2.75512	0.0142857	4.62727e-4	0.0780535	0.00613432
chr2	216130930	216130987	2379961	0	+	0.368421	(0.36,0.39]	chr2	213799	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000471649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	26	2	2.19	2.30557	2.42114	0.0111937	0.00564641	0.0665375	0.0422191
chr5	53884814	53884911	6575902	0	-	0.360825	(0.36,0.39]	chr5	509078	10	UTR3	UTR3:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.97546	2.305335	2.63521	0.0239316	0.00633242	0.109927	0.0446708
chr16	74606740	74606825	16032569	0	-	0.776471	(0.59,1]	chr16	1287399	2	CDS	CDS:EXON_MRNA	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000627032.2:ENST00000565260.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	133	2	2.16689	2.30491	2.44293	0.00209758	7.2493e-4	0.0204266	0.00869086
chr5	31552999	31553097	5919689	0	+	0.306122	(0.29,0.33]	chr5	463928	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	16	2	2.24226	2.30484	2.36742	0.0306054	0.0147368	0.130226	0.0801529
chr5	146287426	146287526	6280309	0	+	0.33	(0.29,0.33]	chr5	489484	15	UTR3	UTR3:EXON_MRNA:INTRON	RP11-449H3.3:RBM27	ENSG00000275740.1:ENSG00000091009.8	ENST00000506502.2:ENST00000265271.7	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.24226	2.30484	2.36742	0.0306054	0.0147368	0.130226	0.0801529
chr7	106250485	106250584	8977863	0	-	0.292929	(0.29,0.33]	chr7	687059	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NAMPT	ENSG00000105835.13	ENST00000681491.1:ENST00000222553.8:ENST00000681494.1:ENST00000680708.1:ENST00000681653.1:ENST00000681391.1:ENST00000680991.1:ENST00000680077.1:ENST00000681456.1:ENST00000680675.1:ENST00000681550.1:ENST00000680864.1:ENST00000680584.1:ENST00000680669.1:ENST00000424768.2:ENST00000681255.1:ENST00000679873.1:ENST00000679643.1:ENST00000681878.1:ENST00000489732.2:ENST00000679951.1:ENST00000680823.1:ENST00000680468.1:ENST00000679894.1:ENST00000680482.1:ENST00000463871.2:ENST00000679461.1:ENST00000681372.1:ENST00000681936.1:ENST00000680152.1:ENST00000680616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	2.24226	2.30484	2.36742	0.0306054	0.0147368	0.130226	0.0801529
chr1	71066854	71066934	1086873	0	-	0.4875	(0.455,0.49]	chr1	110815	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000477096.1:ENST00000254821.10:ENST00000487510.1:ENST00000479947.1:ENST00000473260.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	46	2	1.60095	2.30483	3.00871	0.0212785	2.11527e-4	0.102328	0.00328766
chr7	12233673	12233773	8134858	0	+	0.27	[0,0.29]	chr7	621602	18	UTR3	UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000396668.8:ENST00000396667.7	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	1.95226	2.304645	2.65703	0.0282226	0.00320067	0.124386	0.0280721
chr9	15776233	15776286	10585808	0	-	0.415094	(0.39,0.42]	chr9	801289	2	EXON_SMALL	EXON_SMALL	RNU6-14P	ENSG00000207360.1	ENST00000384630.1	snRNA	snRNA	snRNA	snRNA	18	81	2	1.37272	2.3045999999999998	3.23648	0.0252133	1.94634e-6	0.117089	6.99902e-5
chrX	1387278	1387348	18925576	0	-	0.685714	(0.59,1]	chrX	1612953	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	46	2	1.55494	2.30457	3.0542	0.0511194	0.00663549	0.182342	0.0456243
chr15	44717606	44717698	14899980	0	+	0.336957	(0.33,0.36]	chr15	1171710	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000559220.1:ENST00000561139.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	197	2	1.8772	2.304465	2.73173	9.21674e-4	3.35894e-7	0.0111356	1.57892e-5
chr21	45475475	45475535	18145534	0	+	0.716667	(0.59,1]	chr21	1539688	1	CDS	CDS:EXON_MRNA	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	2.08709	2.3042949999999998	2.5215	0.032241	0.00890645	0.135671	0.0565003
chr7	98385800	98385898	8943304	0	-	0.489796	(0.455,0.49]	chr7	682611	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	BAIAP2L1:RPS3AP26	ENSG00000006453.14:ENSG00000214389.2	ENST00000005260.9:ENST00000462558.5:ENST00000479789.1:ENST00000398259.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	16	80	2	1.91811	2.304285	2.69046	0.00411364	3.60524e-5	0.0325842	7.88197e-4
chr14	99492677	99492777	14481589	0	+	0.41	(0.39,0.42]	chr14	1131345	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CCNK	ENSG00000090061.17	ENST00000557165.5:ENST00000389879.9:ENST00000557441.5:ENST00000553636.1:ENST00000555049.5:ENST00000555842.1:ENST00000556641.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	20	2	1.98676	2.304035	2.62131	0.0439902	0.00609677	0.163596	0.0439136
chr5	149494469	149494569	6910236	0	-	0.43	(0.42,0.455]	chr5	528470	16	UTR3	UTR3:EXON_MRNA	CSNK1A1:CTB-89H12.4	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	14	65	2	1.72275	2.303935	2.88512	0.00841255	5.95335e-5	0.054565	0.00119321
chr17	39471468	39471566	16219788	0	+	0.55102	(0.53,0.59]	chr17	1311053	7	CDS	CDS:EXON_MRNA	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000584632.5:ENST00000430627.6:ENST00000581593.1	protein_coding	protein_coding	protein_coding	protein_coding	6	38	2	2.29789	2.303885	2.30988	0.00674768	0.00643853	0.0468196	0.0452349
chr2	10123362	10123462	1628974	0	+	0.54	(0.53,0.59]	chr2	161706	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000459969.5:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000461327.5:ENST00000498343.5:ENST00000491447.1:ENST00000615152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	38	2	2.29789	2.303885	2.30988	0.00674768	0.00643853	0.0468196	0.0452349
chr6	31829008	31829104	7116697	0	+	0.666667	(0.59,1]	chr6	546209	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	13	124	2	1.72399	2.303715	2.88344	0.00889613	2.63483e-4	0.0565003	0.00427022
chr1	32196291	32196391	127253	0	+	0.52	(0.49,0.53]	chr1	15695	12	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.81941	2.303675	2.78794	0.0158768	0.00251838	0.0854674	0.0226599
chr5	146135600	146135664	6891271	0	-	0.40625	(0.39,0.42]	chr5	527499	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	46	2	2.11822	2.303605	2.48899	0.005418	6.84309e-4	0.0409315	0.00836671
chr1	77964061	77964111	1112832	0	-	0.4	(0.39,0.42]	chr1	111894	1	CDS	CDS:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	1.64934	2.3036000000000003	2.95786	0.0412247	0.00138212	0.155868	0.0149186
chr6	36596915	36596968	7134537	0	+	0.509434	(0.49,0.53]	chr6	549581	2	CDS	CDS:EXON_MRNA	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000620242.1:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	77	2	2.09209	2.30354	2.51499	0.00158363	1.90426e-4	0.0167908	0.00303348
chr14	100369086	100369185	14788870	0	-	0.565657	(0.53,0.59]	chr14	1158769	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	WARS1	ENSG00000140105.18	ENST00000392882.7:ENST00000358655.8:ENST00000355338.6:ENST00000344102.9:ENST00000557135.5:ENST00000556645.5:ENST00000553395.5:ENST00000556504.5:ENST00000557722.5:ENST00000557297.5:ENST00000556435.5:ENST00000553808.5:ENST00000554331.5:ENST00000555063.5:ENST00000556338.5:ENST00000557239.5:ENST00000556698.5:ENST00000553524.5:ENST00000555410.5:ENST00000556579.5:ENST00000554772.5:ENST00000556660.5:ENST00000556783.5:ENST00000553413.5:ENST00000557094.5:ENST00000553769.6:ENST00000553545.5:ENST00000554820.5:ENST00000557347.5:ENST00000554509.5:ENST00000556209.5:ENST00000554605.5:ENST00000555813.5:ENST00000556695.5:ENST00000556295.5:ENST00000555031.5:ENST00000627608.1:ENST00000553934.1:ENST00000553581.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	34	2	2.0404	2.303525	2.56665	0.0362529	0.00209536	0.148525	0.0196588
chrX	134425725	134425824	18863535	0	+	0.343434	(0.33,0.36]	chrX	1607356	5	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	9	36	2	2.22102	2.3035050000000004	2.38599	0.00736622	0.00127971	0.0490627	0.0135886
chr7	107916878	107916964	8457452	0	+	0.372093	(0.36,0.39]	chr7	646318	2	CDS	CDS:UTR3:EXON_MRNA	DLD	ENSG00000091140.14	ENST00000417551.5:ENST00000415325.5:ENST00000440410.5:ENST00000437604.6:ENST00000205402.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	33	2	1.96997	2.303495	2.63702	0.00890772	0.00212882	0.0565003	0.0206577
chr15	58596859	58596958	15310670	0	-	0.373737	(0.36,0.39]	chr15	1208273	82	UTR3	UTR3:EXON_MRNA	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.97546	2.303305	2.63115	0.0245975	0.0239316	0.114841	0.109927
chr10	97432616	97432708	11212391	0	+	0.5	(0.49,0.53]	chr10	852981	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	137	2	2.13733	2.3033	2.46927	3.42347e-4	2.73793e-5	0.00520619	6.30338e-4
chr1	28538205	28538305	117424	0	+	0.51	(0.49,0.53]	chr1	14376	3	UTR3	UTR3:EXON_MRNA	RCC1	ENSG00000180198.17	ENST00000398958.6:ENST00000649185.1:ENST00000683442.1:ENST00000373833.10:ENST00000373832.5	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	2.30189	2.3031449999999998	2.3044	0.00696379	0.00685554	0.0474632	0.0471063
chr19	2271384	2271457	17195990	0	+	0.671233	(0.59,1]	chr19	1412847	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OAZ1:LLfos-48D6.2	ENSG00000104904.12:ENSG00000273734.1	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000621615.1:ENST00000582888.8:ENST00000593012.1:ENST00000588673.3:ENST00000586054.2:ENST00000589361.2:ENST00000592727.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	168	2	1.98097	2.30312	2.62527	0.00354903	1.4445e-4	0.0291916	0.00264688
chr3	23919699	23919798	3358564	0	+	0.313131	(0.29,0.33]	chr3	294139	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	33	126	2	1.99372	2.303105	2.61249	0.0014483	2.46705e-6	0.0155549	8.58479e-5
chr16	70568282	70568353	15730137	0	+	0.394366	(0.39,0.42]	chr16	1253008	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.2627100000000002	2.3031	2.34349	0.0192666	0.0169272	0.0966228	0.0890655
chr19	18279855	18279936	17499037	0	-	0.530864	(0.53,0.59]	chr19	1468044	3	UTR3	UTR3:EXON_MRNA	JUND	ENSG00000130522.6	ENST00000252818.5	protein_coding	protein_coding	protein_coding	protein_coding	11	64	2	1.98301	2.30305	2.62309	0.00369537	0.00065129300000000005	0.0309587	0.00805846
chr20	3931479	3931578	17883239	0	-	0.545455	(0.53,0.59]	chr20	1513717	43	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11:ENST00000432261.6	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	1.90942	2.302885	2.69635	0.0105233	0.00112127	0.0644466	0.0128408
chr22	21789604	21789703	18442654	0	-	0.474747	(0.455,0.49]	chr22	1572534	4	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	15	70	2	1.85463	2.302845	2.75106	0.00411732	7.39462e-5	0.0324653	0.00155715
chr5	163441215	163441315	6343397	0	+	0.37	(0.36,0.39]	chr5	493994	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510097.5:ENST00000510664.5:ENST00000511683.6:ENST00000512532.1:ENST00000504553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	71	2	1.99123	2.302845	2.61446	0.00488173	4.03035e-5	0.0376092	8.66797e-4
chr5	66078823	66078921	6006104	0	+	0.408163	(0.39,0.42]	chr5	470535	4	UTR3	UTR3:EXON_MRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.89968	2.3027949999999997	2.70591	0.0298458	0.0185716	0.130016	0.0932453
chr1	51772069	51772125	191521	0	+	0.482143	(0.455,0.49]	chr1	24527	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	55	2	1.87851	2.302295	2.72608	0.0092042	1.66807e-4	0.0583232	0.00271868
chr4	2929299	2929396	4687497	0	+	0.463918	(0.455,0.49]	chr4	388871	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	55	2	1.87851	2.302295	2.72608	0.0092042	1.66807e-4	0.0583232	0.00271868
chr1	32043684	32043780	125868	0	+	0.354167	(0.33,0.36]	chr1	15466	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	87	2	1.95452	2.3022	2.64988	0.00367385	1.07103e-5	0.0308502	2.92267e-4
chr17	28591784	28591872	16486138	0	-	0.545455	(0.53,0.59]	chr17	1347852	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000531839.5:ENST00000578479.1:ENST00000580567.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	38	2	2.23406	2.301985	2.36991	0.00870728	0.00501452	0.0558165	0.0370872
chr1	167790119	167790219	524604	0	+	0.5	(0.49,0.53]	chr1	56285	23	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.99044	2.3016699999999997	2.6129	0.0435903	0.0052746	0.170594	0.0389109
chr2	47482849	47482949	1785319	0	+	0.27	[0,0.29]	chr2	172536	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	19	2	1.7788	2.301615	2.82443	0.0208453	0.0180803	0.100997	0.0920398
chr8	47837211	47837280	9816138	0	-	0.478261	(0.455,0.49]	chr8	742621	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.90433	2.301305	2.69828	0.0185466	4.39828e-4	0.0932453	0.00592532
chr17	1661610	1661700	16401393	0	-	0.544444	(0.53,0.59]	chr17	1334888	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000573725.1:ENST00000572445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	46	2	1.61377	2.30129	2.98881	0.0436338	2.35204e-4	0.170594	0.00356397
chr17	82084063	82084153	16710733	0	-	0.733333	(0.59,1]	chr17	1378176	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	2.1563	2.301085	2.44587	0.0105307	0.00708052	0.0644466	0.0478776
chr9	112219100	112219199	10802873	0	-	0.414141	(0.39,0.42]	chr9	818409	15	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	20	92	2	1.77138	2.30105	2.83072	0.00483063	7.90877e-6	0.0372389	2.26389e-4
chr4	82851430	82851517	5496758	0	-	0.505747	(0.49,0.53]	chr4	440219	1	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000512664.5	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.7294	2.30104	2.87268	0.0216372	0.00175078	0.103121	0.0180053
chr12	68742560	68742658	12940314	0	+	0.306122	(0.29,0.33]	chr12	1008522	2	UTR3	UTR3:EXON_MRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	25	2	1.89143	2.3008	2.71017	0.0332921	8.23733e-4	0.137922	0.010214
chr7	12232174	12232274	8134843	0	+	0.33	(0.29,0.33]	chr7	621602	3	UTR3	UTR3:EXON_MRNA	TMEM106B	ENSG00000106460.19	ENST00000396668.8:ENST00000396667.7:ENST00000462754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	2.24226	2.300785	2.35931	0.0306054	0.00615202	0.130226	0.0438642
chr7	121297243	121297342	8496842	0	+	0.333333	(0.33,0.36]	chr7	648451	17	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	18	71	2	1.95452	2.3007150000000003	2.64691	0.00367385	3.22271e-5	0.0308502	7.14142e-4
chr7	103298567	103298637	8440980	0	+	0.385714	(0.36,0.39]	chr7	644992	1	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	25	2	1.96997	2.30056	2.63115	0.0245975	0.00890772	0.114841	0.0565003
chr12	30629381	30629479	13276763	0	-	0.387755	(0.36,0.39]	chr12	1040595	5	UTR3	UTR3:EXON_MRNA	IPO8	ENSG00000133704.10	ENST00000256079.9	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.1437	2.3001300000000002	2.45656	0.0340515	0.0100637	0.141465	0.0624019
chr8	100153316	100153414	9518811	0	+	0.377551	(0.36,0.39]	chr8	723526	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLR2K	ENSG00000147669.11	ENST00000519765.1:ENST00000353107.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	2.1437	2.3001300000000002	2.45656	0.0340515	0.0100637	0.141465	0.0624019
chr20	49094731	49094808	17811856	0	+	0.363636	(0.36,0.39]	chr20	1506592	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	30	2	2.11101	2.300115	2.48922	0.0110399	0.00480242	0.0652374	0.0365653
chr17	68531641	68531741	16337430	0	+	0.34	(0.33,0.36]	chr17	1325397	13	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000588188.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	31	2	2.26699	2.300105	2.33322	0.00451613	0.00427416	0.0350603	0.0332637
chr10	69104609	69104707	11094170	0	+	0.357143	(0.33,0.36]	chr10	843406	6	UTR3	UTR3:EXON_MRNA	SRGN	ENSG00000122862.5	ENST00000242465.4	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.12835	2.29999	2.47163	0.0129725	0.00459785	0.0724783	0.0351308
chr10	68973604	68973664	11093307	0	+	0.4	(0.39,0.42]	chr10	843270	2	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.87119	2.2996049999999997	2.72802	0.0373134	3.73817e-4	0.152293	0.00520009
chr1	168243837	168243937	526507	0	+	0.54	(0.53,0.59]	chr1	56538	14	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	5	33	2	1.65775	2.2995	2.94125	0.0573191	0.0012261800000000001	0.196623	0.0135648
chr20	62387901	62388001	17861417	0	+	0.53	(0.49,0.53]	chr20	1510056	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6:ENST00000370592.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	38	2	1.65491	2.2994700000000003	2.94403	0.0213636	0.00122634	0.102709	0.0130695
chr9	103204578	103204677	10778053	0	-	0.393939	(0.39,0.42]	chr9	815846	161	INTRON	INTRON	LINC01492	ENSG00000225564.6	ENST00000411575.5	lncRNA	lncRNA	lncRNA	lncRNA	7	34	2	2.149	2.299295	2.44959	0.0149155	0.00167534	0.0812412	0.0164993
chr11	33706764	33706863	12344180	0	-	0.343434	(0.33,0.36]	chr11	953994	39	UTR3	UTR3:EXON_MRNA:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	13	2	2.28792	2.29909	2.31026	0.0519897	0.0239159	0.18423900000000001	0.112531
chr20	63196510	63196608	18032016	0	-	0.357143	(0.33,0.36]	chr20	1529295	12	UTR3	UTR3:EXON_MRNA	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.28792	2.29909	2.31026	0.0519897	0.0239159	0.18423900000000001	0.112531
chr2	241352736	241352835	2467900	0	+	0.292929	(0.29,0.33]	chr2	223257	9	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	2.25579	2.2989100000000002	2.34203	0.010113	0.00934624	0.0626311	0.0589275
chr1	29015691	29015767	120575	0	+	0.368421	(0.36,0.39]	chr1	14617	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	25	2	1.57368	2.298825	3.02397	0.0292762	0.00674398	0.128453	0.0461258
chr6	34876318	34876417	7126531	0	+	0.383838	(0.36,0.39]	chr6	548492	25	UTR3	UTR3:EXON_MRNA:INTRON	UHRF1BP1	ENSG00000065060.17	ENST00000452449.6:ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.82984	2.29881	2.76778	0.0234753	0.00365703	0.108434	0.0307238
chrX	47582407	47582474	18687872	0	+	0.626866	(0.59,1]	chrX	1593542	1	UTR5	UTR5:EXON_MRNA	TIMP1	ENSG00000102265.12	ENST00000456754.6:ENST00000218388.9:ENST00000377017.5	protein_coding	protein_coding	protein_coding	protein_coding	4	45	2	2.03921	2.2987900000000003	2.55837	0.0371471	0.00709491	0.151849	0.0479177
chr8	38347591	38347687	9796166	0	-	0.416667	(0.39,0.42]	chr8	740758	2	CDS	CDS:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.91489	2.29878	2.68267	0.0197788	0.00125229	0.0960939	0.0133064
chr2	231713035	231713128	2426303	0	+	0.311828	(0.29,0.33]	chr2	218683	3	UTR3	UTR3:EXON_MRNA:PRIMIRNA	PTMA:MIR1244-1	ENSG00000187514.17:ENSG00000284378.1	ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000409683.5:ENST00000412128.1:ENST00000612829.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	9	30	2	2.14426	2.298775	2.45329	0.0142448	9.14793e-4	0.077929	0.0110583
chr10	72273989	72274060	11111161	0	+	0.605634	(0.59,1]	chr10	845349	2	UTR5	UTR5:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	45	2	2.11894	2.298655	2.47837	0.0293157	0.00970721	0.128478	0.0608296
chrX	53378613	53378712	19076608	0	-	0.272727	[0,0.29]	chrX	1622486	46	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	16	47	2	1.74207	2.29864	2.85521	0.00924965	8.3e-5	0.0586023	0.00156827
chr2	197497216	197497294	3106879	0	-	0.423077	(0.42,0.455]	chr2	274669	2	CDS	CDS:UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	102	2	2.27985	2.2985800000000003	2.31731	2.32425e-4	1.65842e-4	0.00385205	0.00270436
chr12	120197383	120197483	13579736	0	-	0.51	(0.49,0.53]	chr12	1068802	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	144	2	2.25006	2.2985100000000003	2.34696	1.04019e-4	8.01658e-5	0.002022	0.00151763
chr10	43386926	43387021	11461762	0	-	0.515789	(0.49,0.53]	chr10	873955	3	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	18	91	2	2.01905	2.29846	2.57787	0.00136067	7.95993e-5	0.0147143	0.00150748
chr12	102077321	102077412	13508165	0	-	0.417582	(0.39,0.42]	chr12	1061944	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	NUP37	ENSG00000075188.9	ENST00000552283.6:ENST00000251074.5:ENST00000547269.1:ENST00000551744.2:ENST00000551200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.99911	2.2982750000000003	2.59744	0.0477207	0.00572981	0.17993	0.0417368
chr2	47806451	47806551	1788271	0	+	0.41	(0.39,0.42]	chr2	172690	1	CDS	CDS:UTR3:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.99911	2.2982750000000003	2.59744	0.0477207	0.00572981	0.17993	0.0417368
chr8	56962997	56963096	9836821	0	-	0.393939	(0.39,0.42]	chr8	744432	52	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.99911	2.2982750000000003	2.59744	0.0477207	0.00572981	0.17993	0.0417368
chr6	139372847	139372941	7995331	0	-	0.37234	(0.36,0.39]	chr6	611348	12	UTR3	UTR3:EXON_MRNA	CITED2	ENSG00000164442.10	ENST00000367651.4:ENST00000536159.2:ENST00000537332.2	protein_coding	protein_coding	protein_coding	protein_coding	31	122	2	2.217	2.29826	2.37952	8.46985e-5	7.8841e-5	0.00164464	0.00159231
chr10	131973867	131973943	11750504	0	-	0.513158	(0.49,0.53]	chr10	896516	2	CDS	CDS:EXON_MRNA	BNIP3	ENSG00000176171.11	ENST00000368636.8:ENST00000540159.3:ENST00000633835.1:ENST00000631806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	28	2	1.7294	2.2982500000000003	2.8671	0.0216372	0.0100489	0.103121	0.0623334
chr19	16519158	16519258	17491226	0	-	0.58	(0.53,0.59]	chr19	1466413	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-3222D19.2:CHERP	ENSG00000141979.4:ENSG00000085872.15	ENST00000409035.1:ENST00000546361.7:ENST00000198939.6:ENST00000597261.1:ENST00000544299.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	32	2	1.88327	2.298225	2.71318	0.0298124	0.00340745	0.129773	0.0283456
chr12	56138025	56138074	12898361	0	+	0.469388	(0.455,0.49]	chr12	1004280	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT1	ENSG00000139641.13	ENST00000394048.10:ENST00000267113.4:ENST00000547667.5:ENST00000550878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	22	2	2.12994	2.29809	2.46624	0.0304832	0.0094145	0.130204	0.0592633
chr5	133076816	133076898	6226895	0	+	0.353659	(0.33,0.36]	chr5	484761	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1:ENST00000504328.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	24	2	1.65713	2.2979849999999997	2.93884	0.0528205	0.00135211	0.195536	0.0140654
chrY	10200230	10200306	19310729	0	+	0.578947	(0.53,0.59]	chrY	1641260	2	EXON_SMALL	EXON_SMALL	RNA5-8SP6	ENSG00000251705.1	ENST00000515896.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	33	236	2	1.07342	2.29798	3.52254	0.043348	3.59841e-9	0.170333	3.19934e-7
chr11	8947853	8947946	12262141	0	-	0.397849	(0.39,0.42]	chr11	948021	8	UTR3	UTR3:EXON_MRNA	TMEM9B	ENSG00000175348.11	ENST00000534025.6:ENST00000309134.9:ENST00000525069.5	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.25245	2.2979700000000003	2.34349	0.0169272	0.00427758	0.0890655	0.0332717
chr11	32587096	32587144	11898147	0	+	0.395833	(0.39,0.42]	chr11	908890	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3M	ENSG00000149100.13	ENST00000531921.5:ENST00000531120.6:ENST00000525782.5:ENST00000531186.5:ENST00000524896.5:ENST00000532444.5:ENST00000323213.9:ENST00000524711.5:ENST00000530026.5:ENST00000532054.1:ENST00000533439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	29	2	2.25245	2.2979700000000003	2.34349	0.0169272	0.00427758	0.0890655	0.0332717
chr1	15930582	15930682	71842	0	+	0.36	(0.33,0.36]	chr1	8104	26	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.07736	2.2976650000000003	2.51797	0.0442037	0.0303594	0.172163	0.130016
chr13	31137317	31137417	13951286	0	-	0.35	(0.33,0.36]	chr13	1094977	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000435381.5:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	2.07736	2.2976650000000003	2.51797	0.0442037	0.0303594	0.172163	0.130016
chr2	27615218	27615269	1693766	0	+	0.352941	(0.33,0.36]	chr2	166290	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNF512:RP11-158I13.2	ENSG00000243943.10:ENSG00000259080.1	ENST00000556601.5:ENST00000413371.6:ENST00000416005.6:ENST00000379717.5:ENST00000355467.6:ENST00000505973.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	13	2	2.07736	2.2976650000000003	2.51797	0.0442037	0.0303594	0.172163	0.130016
chr5	131671882	131671977	6829987	0	-	0.357895	(0.33,0.36]	chr5	522333	5	CDS	CDS:EXON_MRNA:INTRON	CTC-432M15.3:FNIP1	ENSG00000273217.1:ENSG00000217128.12	ENST00000514667.1:ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000615660.4	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.07736	2.2976650000000003	2.51797	0.0442037	0.0303594	0.172163	0.130016
chr8	17229330	17229429	9729243	0	-	0.333333	(0.33,0.36]	chr8	735884	45	UTR3	UTR3:EXON_MRNA	CNOT7	ENSG00000198791.12	ENST00000361272.9	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	2.07736	2.2976650000000003	2.51797	0.0442037	0.0303594	0.172163	0.130016
chr6	152971162	152971262	8029505	0	-	0.4	(0.39,0.42]	chr6	614120	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000477822.2:ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	28	2	2.09802	2.2975149999999998	2.49701	0.0339607	0.00495705	0.141431	0.0368301
chr9	137112111	137112170	10893153	0	-	0.745763	(0.59,1]	chr9	828362	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DPP7	ENSG00000176978.14	ENST00000371579.7:ENST00000473532.5:ENST00000470766.5:ENST00000463619.1:ENST00000483783.1:ENST00000472306.5:ENST00000485456.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	40	2	1.74555	2.297495	2.84944	0.0444308	0.0128238	0.165174	0.0719798
chr20	36048955	36049054	17956031	0	-	0.353535	(0.33,0.36]	chr20	1521358	35	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	15	53	2	1.86662	2.297445	2.72827	0.0032692900000000002	2.69438e-4	0.0273807	0.00434514
chr13	33836480	33836573	13682635	0	+	0.27957	[0,0.29]	chr13	1078395	3	UTR3	UTR3:EXON_MRNA:INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.15488	2.2972900000000003	2.4397	0.0436536	0.0388194	0.170594	0.149227
chr2	157313133	157313232	2152666	0	+	0.282828	[0,0.29]	chr2	198632	19	UTR3	UTR3:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.15488	2.2972900000000003	2.4397	0.0436536	0.0388194	0.170594	0.149227
chr20	53568725	53568822	18015825	0	-	0.28866000000000003	[0,0.29]	chr20	1526869	18	UTR3	UTR3:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3:ENST00000437222.1	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.15488	2.2972900000000003	2.4397	0.0436536	0.0388194	0.170594	0.149227
chr3	112532603	112532698	4354860	0	-	0.284211	[0,0.29]	chr3	363181	2	UTR3	UTR3:EXON_MRNA	ATG3	ENSG00000144848.11	ENST00000283290.10:ENST00000402314.6:ENST00000494571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	11	2	2.15488	2.2972900000000003	2.4397	0.0436536	0.0388194	0.170594	0.149227
chr3	170084344	170084435	3878304	0	+	0.241758	[0,0.29]	chr3	328577	4	CDS	CDS:EXON_MRNA	GPR160	ENSG00000173890.17	ENST00000355897.10:ENST00000485735.6:ENST00000473675.1	protein_coding	protein_coding	protein_coding	protein_coding	3	11	2	2.15488	2.2972900000000003	2.4397	0.0436536	0.0388194	0.170594	0.149227
chr8	97851762	97851858	9507218	0	+	0.375	(0.36,0.39]	chr8	722769	4	UTR3	UTR3:EXON_MRNA	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	9	38	2	2.17306	2.2971	2.42114	0.00564641	0.00224077	0.0422191	0.0207282
chr15	80158114	80158170	15045472	0	+	0.482143	(0.455,0.49]	chr15	1183671	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FAH	ENSG00000103876.14	ENST00000558022.5:ENST00000407106.5:ENST00000537726.5:ENST00000261755.9:ENST00000558767.6:ENST00000561369.1:ENST00000682012.1:ENST00000561421.6:ENST00000684569.1:ENST00000684363.1:ENST00000539156.5:ENST00000646551.1:ENST00000683593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	21	2	2.08503	2.297035	2.50904	0.0310515	0.0158994	0.131262	0.0856643
chr12	124863720	124863802	13601023	0	-	0.768293	(0.59,1]	chr12	1071756	1	UTR5	UTR5:EXON_MRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	35	2	2.28778	2.297005	2.30623	0.0556537	0.0170607	0.191528	0.0896731
chr21	5973233	5973333	18154293	0	-	0.65	(0.59,1]	chr21	1541261	1	CDS_START	CDS_START:CDS:EXON_MRNA	CH507-42P11.1	ENSG00000274559.3	ENST00000464664.3	protein_coding	protein_coding	protein_coding	protein_coding	3	35	2	2.28778	2.297005	2.30623	0.0556537	0.0170607	0.191528	0.0896731
chr20	33853739	33853828	17761773	0	+	0.494382	(0.49,0.53]	chr20	1500077	3	UTR3	UTR3:EXON_MRNA	CHMP4B	ENSG00000101421.4	ENST00000217402.3	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	2.09506	2.2965150000000003	2.49797	0.00843736	0.00820526	0.0546021	0.05339
chr17	63833908	63834006	16635143	0	-	0.520408	(0.49,0.53]	chr17	1367732	1	CDS	CDS:UTR3:EXON_MRNA	SMARCD2	ENSG00000108604.16	ENST00000448276.7:ENST00000613943.4:ENST00000323347.14:ENST00000225742.13:ENST00000450364.3:ENST00000584483.5:ENST00000584400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	2.13501	2.296495	2.45798	0.0287874	0.00353238	0.128869	0.029076
chr1	26779983	26780079	111012	0	+	0.520833	(0.49,0.53]	chr1	13354	11	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	2.03065	2.29624	2.56183	0.0261296	0.0189484	0.118976	0.0958835
chr1	39005391	39005486	145766	0	+	0.494737	(0.49,0.53]	chr1	18077	15	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.03065	2.29624	2.56183	0.0261296	0.0189484	0.118976	0.0958835
chr17	47222379	47222457	16248600	0	+	0.5	(0.49,0.53]	chr17	1316208	1	CDS	CDS:UTR3:EXON_MRNA	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000570671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	22	2	2.03065	2.29624	2.56183	0.0261296	0.0189484	0.118976	0.0958835
chr17	29261538	29261638	16490884	0	-	0.29	[0,0.29]	chr17	1348880	58	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	2.28104	2.296185	2.31133	0.0202028	0.00696038	0.0984041	0.0474632
chr10	22329736	22329833	10962214	0	+	0.360825	(0.36,0.39]	chr10	834314	3	UTR3	UTR3:EXON_MRNA	BMI1	ENSG00000168283.14	ENST00000376663.8	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	1.94692	2.29617	2.64542	0.0192083	6.12028e-4	0.0943643	0.00763546
chr4	25747531	25747630	5361844	0	-	0.474747	(0.455,0.49]	chr4	430113	2	UTR3	UTR3:EXON_MRNA	SEL1L3	ENSG00000091490.11	ENST00000264868.9:ENST00000399878.8:ENST00000513416.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	40	2	1.79605	2.2961	2.79615	0.0427708	2.49149e-4	0.168094	0.00376163
chr20	50936147	50936204	18006720	0	-	0.438596	(0.42,0.455]	chr20	1526287	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DPM1	ENSG00000000419.14	ENST00000371582.8:ENST00000466152.5:ENST00000683048.1:ENST00000371588.10:ENST00000494752.1:ENST00000682366.1:ENST00000371584.9:ENST00000684193.1:ENST00000683466.1:ENST00000682713.1:ENST00000681979.1:ENST00000684708.1:ENST00000413082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	26	2	1.86513	2.295995	2.72686	0.0357107	0.00330337	0.147298	0.027613
chr1	241513602	241513657	1577536	0	-	0.4	(0.39,0.42]	chr1	157544	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1:ENST00000497042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	33	2	2.27012	2.29566	2.3212	0.00945558	0.00312058	0.0594007	0.0264364
chr7	76304073	76304159	8343361	0	+	0.604651	(0.59,1]	chr7	636385	1	CDS_SOLITARY	CDS_SOLITARY:CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000447574.1:ENST00000674650.1:ENST00000675417.1:ENST00000429938.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	141	2	2.19147	2.29561	2.39975	0.0013039	9.77557e-4	0.0137186	0.0116431
chr13	45337103	45337197	14005924	0	-	0.297872	(0.29,0.33]	chr13	1098085	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000528619.5:ENST00000529421.5:ENST00000484604.5:ENST00000490277.1:ENST00000533567.5:ENST00000530245.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	42	2	1.89656	2.2950999999999997	2.69364	0.00981789	2.27069e-4	0.06149	0.0034888
chr1	241506002	241506085	1577455	0	-	0.445783	(0.42,0.455]	chr1	157525	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	39	2	2.15996	2.29467	2.42938	0.0045028	0.00365851	0.0349711	0.0299719
chr7	128092236	128092325	8519381	0	+	0.516854	(0.49,0.53]	chr7	649827	3	UTR3	UTR3:EXON_MRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	1.99044	2.294625	2.59881	0.0435903	0.00184545	0.170594	0.0178046
chr4	144110942	144111039	5696546	0	-	0.28866000000000003	[0,0.29]	chr4	451524	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GYPA:RP11-1289C17.1	ENSG00000170180.22:ENSG00000285783.1	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000510771.1:ENST00000650526.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	22	67	2	2.01246	2.29458	2.5767	5.80661e-4	3.28732e-4	0.00735699	0.00504024
chr3	47916514	47916609	4164424	0	-	0.421053	(0.42,0.455]	chr3	348579	7	CDS	CDS:EXON_MRNA:INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000482752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	42	2	1.87159	2.2944750000000003	2.71736	0.0214479	3.91972e-4	0.102998	0.00539186
chr5	149525044	149525134	6910557	0	-	0.422222	(0.42,0.455]	chr5	528543	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000670598.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	42	2	1.87159	2.2944750000000003	2.71736	0.0214479	3.91972e-4	0.102998	0.00539186
chr17	48622802	48622899	16578571	0	-	0.474227	(0.455,0.49]	chr17	1361937	18	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	55	2	1.92615	2.294425	2.6627	0.00372792	5.73968e-4	0.0302984	0.00781936
chr3	96617369	96617465	4316741	0	-	0.395833	(0.39,0.42]	chr3	360010	2	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	193	833	2	2.01419	2.294305	2.57442	2.19897e-5	1.68993e-7	5.78324e-4	8.8024e-6
chr6	163572904	163573004	7540856	0	+	0.29	[0,0.29]	chr6	575649	23	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	48	2	2.08391	2.294165	2.50442	0.00360933	2.32754e-4	0.0303804	0.00355688
chr1	23971141	23971241	898630	0	-	0.45	(0.42,0.455]	chr1	93367	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000485841.5:ENST00000338597.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	26	2	1.67452	2.294125	2.91373	0.0264395	0.00892357	0.117445	0.0567495
chr10	69364842	69364902	11096471	0	+	0.383333	(0.36,0.39]	chr10	843743	2	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	2.1437	2.294085	2.44447	0.0364669	0.0340515	0.145024	0.141465
chr10	73028269	73028369	11568445	0	-	0.39	(0.36,0.39]	chr10	880460	110	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.1437	2.294085	2.44447	0.0364669	0.0340515	0.145024	0.141465
chr15	22828203	22828302	14810608	0	+	0.383838	(0.36,0.39]	chr15	1162096	41	UTR3	UTR3:EXON_MRNA	NIPA1	ENSG00000170113.16	ENST00000437912.6:ENST00000337435.9	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.1437	2.294085	2.44447	0.0364669	0.0340515	0.145024	0.141465
chr17	82478270	82478370	16383608	0	+	0.38	(0.36,0.39]	chr17	1332634	3	SS3_PROX	SS3_PROX:INTRON	NARF	ENSG00000141562.18	ENST00000390006.8:ENST00000345415.11:ENST00000412079.6:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000577410.2:ENST00000579083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	2.1437	2.294085	2.44447	0.0364669	0.0340515	0.145024	0.141465
chr19	28534799	28534899	17526163	0	-	0.33	(0.29,0.33]	chr19	1470947	3	SS5_PROX	SS5_PROX:INTRON	AC005307.5:AC005307.4:AC005616.1	ENSG00000283403.1:ENSG00000267243.6:ENSG00000266893.1	ENST00000592347.5:ENST00000593065.5:ENST00000589999.1	lncRNA	lncRNA	lncRNA	lncRNA	4	14	2	1.99415	2.29405	2.59395	0.0333928	0.0249836	0.140128	0.114013
chr2	74155877	74155975	2740229	0	-	0.316327	(0.29,0.33]	chr2	243880	35	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	1.99415	2.29405	2.59395	0.0333928	0.0249836	0.140128	0.114013
chr8	47927830	47927890	9817091	0	-	0.383333	(0.36,0.39]	chr8	742831	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000541488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	37	2	2.18868	2.29383	2.39898	0.00436393	0.00221341	0.0340502	0.0204985
chr10	27110798	27110897	11423277	0	-	0.282828	[0,0.29]	chr10	870884	8	UTR3	UTR3:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	2.16074	2.293595	2.42645	0.0222978	0.0123114	0.105845	0.070688
chr10	73746832	73746932	11115608	0	+	0.56	(0.53,0.59]	chr10	845830	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000477008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	41	2	2.0271	2.2935600000000003	2.56002	0.00643061	0.00634904	0.0450905	0.0446708
chr22	16652313	16652413	18286242	0	+	0.36	(0.33,0.36]	chr22	1551703	39	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7:ENST00000415121.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	20	2	2.17058	2.2934900000000003	2.4164	0.01664	0.011989	0.0878065	0.0700473
chr19	7962989	7963088	17447940	0	-	0.434343	(0.42,0.455]	chr19	1458189	15	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	11	52	2	2.20868	2.2934150000000004	2.37815	0.0019911	0.00123168	0.019572	0.0131094
chr10	73775774	73775863	11115933	0	+	0.314607	(0.29,0.33]	chr10	845948	2	UTR3	UTR3:EXON_MRNA:INTRON	FUT11	ENSG00000196968.11	ENST00000372841.8:ENST00000394790.2:ENST00000489264.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	17	2	1.66607	2.29336	2.92065	0.0424383	0.0117842	0.160073	0.0686664
chr13	33837407	33837500	13682645	0	+	0.311828	(0.29,0.33]	chr13	1078395	13	UTR3	UTR3:EXON_MRNA:INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000380071.8:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	1.66607	2.29336	2.92065	0.0424383	0.0117842	0.160073	0.0686664
chr20	43460963	43461063	17792082	0	+	0.48	(0.455,0.49]	chr20	1503884	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SRSF6:RP1-138B7.8	ENSG00000124193.16:ENSG00000288000.1	ENST00000662078.1:ENST00000668808.1:ENST00000670741.1:ENST00000244020.5:ENST00000483871.6:ENST00000657241.1:ENST00000671022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	25	2	1.61715	2.2932	2.96925	0.0342264	0.00698725	0.142155	0.0473262
chr16	88734649	88734723	16074633	0	-	0.594595	(0.59,1]	chr16	1291730	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	10	104	2	2.21052	2.29312	2.37572	0.010462	6.96002e-4	0.063428	0.00846751
chr1	29119948	29120046	121649	0	+	0.336735	(0.33,0.36]	chr1	14751	33	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	38	2	2.17058	2.292805	2.41503	0.01664	6.19579e-4	0.0878065	0.00770898
chr14	32484184	32484272	14571973	0	-	0.511364	(0.49,0.53]	chr14	1141842	2	EXON_PSEUDO	EXON_PSEUDO	MTCO1P2	ENSG00000259045.1	ENST00000554243.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	17	87	2	1.7452	2.2927049999999998	2.84021	0.00573905	2.07916e-5	0.0426551	5.02099e-4
chr1	86863005	86863098	1144510	0	-	0.387097	(0.36,0.39]	chr1	113724	7	UTR3	UTR3:EXON_MRNA	SELENOF	ENSG00000183291.17	ENST00000331835.10:ENST00000611507.4:ENST00000616787.4:ENST00000370554.5:ENST00000648872.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	67	2	2.09584	2.292695	2.48955	8.87116e-4	3.04967e-4	0.0101856	0.00472197
chr20	1375534	1375603	17875229	0	-	0.42029	(0.42,0.455]	chr20	1512325	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314N13.10:FKBP1A	ENSG00000274322.1:ENSG00000088832.18	ENST00000618770.1:ENST00000617804.1:ENST00000677937.1:ENST00000439640.5:ENST00000618612.5:ENST00000400137.9:ENST00000460490.2:ENST00000678136.1:ENST00000677335.1:ENST00000474657.6:ENST00000381719.8:ENST00000678408.1:ENST00000381724.8:ENST00000381715.4:ENST00000678325.1:ENST00000612074.5:ENST00000474726.5:ENST00000677078.1:ENST00000677533.1:ENST00000679195.1:ENST00000614856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	29	2	1.87908	2.292595	2.70611	0.0189336	0.00397496	0.0958835	0.0322851
chr7	30631447	30631503	8203883	0	+	0.482143	(0.455,0.49]	chr7	625858	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000465748.2:ENST00000496643.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	57	2	2.15985	2.2922700000000003	2.42469	0.0128965	2.19004e-4	0.0722356	0.00338727
chrX	47228842	47228916	18687069	0	+	0.594595	(0.59,1]	chrX	1593352	2	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDK16	ENSG00000102225.16	ENST00000457458.6:ENST00000357227.9:ENST00000622098.4:ENST00000517426.5:ENST00000428400.5:ENST00000518022.5:ENST00000276052.10:ENST00000523344.5:ENST00000462827.2:ENST00000520141.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	78	2	1.90752	2.29208	2.67664	0.0282297	6.8436e-4	0.127287	0.00836671
chr19	16413377	16413476	17248492	0	+	0.525253	(0.49,0.53]	chr19	1423210	8	EXON_PSEUDO	EXON_PSEUDO	CTD-2013N17.1	ENSG00000240418.1	ENST00000494084.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	42	2	1.73918	2.292055	2.84493	0.0213952	5.26587e-4	0.102813	0.00679103
chr17	49710423	49710515	16583003	0	-	0.347826	(0.33,0.36]	chr17	1362589	2	UTR3	UTR3:EXON_MRNA	FAM117A	ENSG00000121104.8	ENST00000240364.7	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	2.26699	2.2919799999999997	2.31697	0.00966431	0.00427416	0.0606263	0.0332637
chr19	17405475	17405575	17495816	0	-	0.5	(0.49,0.53]	chr19	1467264	1	CDS_START	CDS_START:CDS:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	55	2	1.89161	2.291905	2.6922	0.00594773	4.50155e-4	0.0430241	0.00605268
chr2	74159090	74159172	2740263	0	-	0.463415	(0.455,0.49]	chr2	243888	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	44	2	2.0456	2.29169	2.53778	0.00663817	0.00105636	0.0456262	0.0117237
chr17	7014286	7014368	16103377	0	+	0.670732	(0.59,1]	chr17	1296034	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNASEK:RNASEK-C17orf49	ENSG00000219200.12:ENSG00000161939.19	ENST00000548577.5:ENST00000546395.5:ENST00000570898.1:ENST00000593646.6:ENST00000552039.2:ENST00000549775.5:ENST00000552176.2:ENST00000552842.1:ENST00000549393.2:ENST00000547863.5:ENST00000552321.2:ENST00000607564.1:ENST00000547302.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	34	2	2.25872	2.291635	2.32455	0.0520547	0.0193473	0.193787	0.0969537
chr22	37678493	37678573	18363199	0	+	0.6	(0.59,1]	chr22	1561875	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LGALS1	ENSG00000100097.12	ENST00000215909.10:ENST00000425542.5:ENST00000454173.1:ENST00000489315.5:ENST00000472321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	34	2	2.25872	2.291635	2.32455	0.0520547	0.0193473	0.193787	0.0969537
chr7	106112261	106112312	8977836	0	-	0.764706	(0.59,1]	chr7	687054	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SYPL1	ENSG00000008282.9	ENST00000011473.6:ENST00000455385.7:ENST00000483448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.25872	2.291635	2.32455	0.0520547	0.0193473	0.193787	0.0969537
chr5	133980804	133980880	6843356	0	-	0.605263	(0.59,1]	chr5	523584	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000492324.1:ENST00000425992.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	56	2	2.03921	2.29139	2.54357	0.0371471	0.00276959	0.151849	0.0240579
chr3	50258665	50258765	3465540	0	+	0.65	(0.59,1]	chr3	303018	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GNAI2	ENSG00000114353.17	ENST00000422163.5:ENST00000446079.5:ENST00000491100.5:ENST00000266027.9:ENST00000313601.11:ENST00000441156.5:ENST00000440628.5:ENST00000451956.1:ENST00000490122.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	63	2	2.27639	2.29131	2.30623	0.0170607	0.00420132	0.0896731	0.0328662
chr5	115913785	115913884	6161639	0	+	0.323232	(0.29,0.33]	chr5	481126	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AP3S1	ENSG00000177879.17	ENST00000316788.12:ENST00000395548.6:ENST00000505423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	35	2	1.99403	2.29124	2.58845	0.0202925	4.30021e-4	0.098158	0.00581002
chr1	220006243	220006313	1511060	0	-	0.314286	(0.29,0.33]	chr1	151047	3	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	39	2	1.99389	2.29117	2.58845	0.00896841	4.30021e-4	0.0569518	0.00581002
chr15	41358203	41358258	14886020	0	+	0.290909	(0.29,0.33]	chr15	1169344	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	35	2	2.17855	2.29094	2.40333	0.0183673	6.93909e-4	0.0928041	0.00846751
chr2	33637624	33637723	1724564	0	+	0.313131	(0.29,0.33]	chr2	168995	3	INTRON	INTRON	RP11-816B18.1	ENSG00000286415.1	ENST00000669243.1:ENST00000658639.1	lncRNA	lncRNA	lncRNA	lncRNA	9	35	2	2.17855	2.29094	2.40333	0.0183673	6.93909e-4	0.0928041	0.00846751
chr1	45014939	45015006	174353	0	+	0.58209	(0.53,0.59]	chr1	22554	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	67	2	1.8526	2.290785	2.72897	0.00925136	1.64347e-4	0.0586114	0.00269001
chr3	185418086	185418185	4625650	0	-	0.484848	(0.455,0.49]	chr3	382004	7	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	78	2	1.94735	2.29075	2.63415	0.00680997	3.49923e-5	0.0465162	7.68198e-4
chr17	48622220	48622317	16578565	0	-	0.546392	(0.53,0.59]	chr17	1361937	12	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	44	2	2.15403	2.290715	2.4274	0.0118065	0.00178327	0.0686664	0.017318
chr15	29700722	29700819	15183779	0	-	0.278351	[0,0.29]	chr15	1195074	15	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11:ENST00000677774.1	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	2.16409	2.290685	2.41728	0.0125675	0.00228359	0.0716375	0.0209856
chr14	21231004	21231072	14520727	0	-	0.5	(0.49,0.53]	chr14	1137258	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000557157.5:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	52	2	2.25594	2.29053	2.32512	0.00306772	0.00138797	0.0272156	0.0143567
chr6	157943227	157943324	7516751	0	+	0.237113	[0,0.29]	chr6	573600	5	UTR3	UTR3:EXON_MRNA	SNX9	ENSG00000130340.17	ENST00000680863.1:ENST00000679814.1:ENST00000680464.1:ENST00000681186.1:ENST00000679732.1:ENST00000681651.1:ENST00000680089.1:ENST00000680078.1:ENST00000680974.1:ENST00000681138.1:ENST00000392185.8:ENST00000679790.1:ENST00000680495.1:ENST00000679691.1:ENST00000681469.1:ENST00000680680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	42	2	2.11113	2.2904400000000003	2.46975	0.00342811	4.07355e-4	0.0283582	0.00599067
chr6	27147228	27147321	7104165	0	+	0.645161	(0.59,1]	chr6	543293	1	CDS	CDS:EXON_MRNA:PRIMIRNA	H2AC12:MIR3143	ENSG00000274997.2:ENSG00000265565.1	ENST00000377459.3:ENST00000584253.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	23	225	2	2.04582	2.29035	2.53488	0.00104678	1.56448e-4	0.0123035	0.00259991
chr2	27026541	27026638	1690566	0	+	0.608247	(0.59,1]	chr2	165296	3	UTR3	UTR3:EXON_MRNA	MAPRE3	ENSG00000084764.12	ENST00000233121.7:ENST00000405074.7	protein_coding	protein_coding	protein_coding	protein_coding	6	67	2	1.79051	2.29002	2.78953	0.0396851	9.28839e-4	0.161349	0.0105151
chr2	55232750	55232824	1822052	0	+	0.540541	(0.53,0.59]	chr2	173951	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS27A	ENSG00000143947.15	ENST00000402285.7:ENST00000449323.5:ENST00000404735.1:ENST00000463185.1:ENST00000272317.11:ENST00000471772.6:ENST00000478196.6:ENST00000494756.1:ENST00000495843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	72	2	1.75005	2.289815	2.82958	0.0106076	8.75863e-5	0.0640804	0.00162799
chr1	19174953	19175033	876709	0	-	0.5125	(0.49,0.53]	chr1	90315	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	37	2	2.19229	2.28956	2.38683	0.012654	0.00311904	0.0718207	0.0264364
chr7	44834305	44834402	8800365	0	-	0.329897	(0.29,0.33]	chr7	671367	25	UTR3	UTR3:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5	protein_coding	protein_coding	protein_coding	protein_coding	15	57	2	1.89656	2.2893	2.68204	0.00981789	4.04238e-5	0.06149	8.68902e-4
chr6	35834621	35834718	7677926	0	-	0.298969	(0.29,0.33]	chr6	588535	18	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	39	2	1.81695	2.289035	2.76112	0.0105563	3.43482e-4	0.0637867	0.00483927
chr15	90500204	90500301	15100797	0	+	0.412371	(0.39,0.42]	chr15	1188226	2	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1:ENST00000558957.1:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	1.79377	2.288885	2.784	0.0299302	0.00261393	0.129773	0.0230705
chr1	54031850	54031950	1027172	0	-	0.28	[0,0.29]	chr1	106598	53	UTR3	UTR3:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5	protein_coding	protein_coding	protein_coding	protein_coding	17	51	2	2.1355	2.2888	2.4421	0.00141834	3.26821e-4	0.0145848	0.00502339
chr7	73297244	73297344	8331810	0	+	0.62	(0.59,1]	chr7	634444	6	EXON_PSEUDO	EXON_PSEUDO	POM121B	ENSG00000205578.6	ENST00000380760.4	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	6	61	2	2.04605	2.28876	2.53147	0.0103872	0.00807544	0.0640167	0.0531324
chr5	119118909	119119004	6175108	0	+	0.347368	(0.33,0.36]	chr5	481620	2	CDS	CDS:EXON_MRNA:INTRON	DMXL1	ENSG00000172869.15	ENST00000539542.6:ENST00000503802.5:ENST00000311085.8:ENST00000514151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	2.05855	2.28871	2.51887	0.0358636	0.018622	0.147298	0.0952021
chr1	38864471	38864570	951537	0	-	0.282828	[0,0.29]	chr1	100303	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP5-864K19.7:MYCBP:RP5-864K19.6	ENSG00000273637.1:ENSG00000214114.9:ENSG00000274944.4	ENST00000622355.1:ENST00000397572.5:ENST00000494695.4:ENST00000495043.5:ENST00000489803.5:ENST00000454994.3:ENST00000489575.2:ENST00000621281.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	14	42	2	2.17693	2.288665	2.4004	0.00246711	6.25965e-4	0.0222554	0.00830879
chr1	225402638	225402733	1528061	0	-	0.273684	[0,0.29]	chr1	152775	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	45	2	1.88276	2.288655	2.69455	0.00321684	5.27788e-4	0.0269556	0.00736361
chr1	205715500	205715599	1462010	0	-	0.484848	(0.455,0.49]	chr1	147460	28	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	33	144	2	1.68029	2.28862	2.89695	0.00199157	2.07816e-6	0.0195758	7.37958e-5
chr4	99948180	99948274	5551579	0	-	0.308511	(0.29,0.33]	chr4	443717	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	38	2	1.3453	2.288595	3.23189	0.0512371	5.87177e-5	0.192148	0.00117909
chr5	138568986	138569049	6862497	0	-	0.460317	(0.455,0.49]	chr5	525235	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	77	2	1.98888	2.2885150000000003	2.58815	0.00127995	2.15612e-4	0.0135903	0.00361208
chr3	57571456	57571550	4210662	0	-	0.340426	(0.33,0.36]	chr3	355311	2	UTR3	UTR3:EXON_MRNA	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	71	2	2.14833	2.2884	2.42847	0.00253487	7.7945e-5	0.0233955	0.00148218
chrX	119243440	119243533	18840473	0	+	0.333333	(0.33,0.36]	chrX	1605479	3	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.8112	2.28835	2.7655	0.0257865	0.0175892	0.116737	0.0918323
chrX	154381025	154381097	18917489	0	+	0.680556	(0.59,1]	chrX	1611787	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EMD	ENSG00000102119.12	ENST00000369835.3:ENST00000369842.9:ENST00000486738.5:ENST00000428228.5:ENST00000682114.1:ENST00000684678.1:ENST00000683627.1:ENST00000684082.1:ENST00000684633.1:ENST00000682478.1:ENST00000683576.1:ENST00000492448.1:ENST00000471965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	2.0452	2.288335	2.53147	0.0179494	0.00807544	0.0939469	0.0531324
chr1	21823120	21823217	890595	0	-	0.649485	(0.59,1]	chr1	92196	10	UTR3	UTR3:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000486901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	34	2	2.17889	2.28818	2.39747	0.0430221	0.025085	0.161091	0.116848
chr1	186320311	186320364	1411782	0	-	0.490566	(0.49,0.53]	chr1	142790	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000467810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	33	2	2.03065	2.2881150000000003	2.54558	0.0189484	0.0024326	0.0958835	0.0228485
chr22	16649921	16650021	18286218	0	+	0.52	(0.49,0.53]	chr22	1551703	15	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7:ENST00000415121.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	6	33	2	2.03065	2.2881150000000003	2.54558	0.0189484	0.0024326	0.0958835	0.0228485
chr19	38838396	38838463	17561085	0	-	0.597015	(0.59,1]	chr19	1475071	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	AC104534.3:HNRNPL	ENSG00000268083.5:ENSG00000104824.18	ENST00000594769.5:ENST00000602021.1:ENST00000221419.10:ENST00000647557.1:ENST00000595443.5:ENST00000388749.7:ENST00000601449.5:ENST00000597731.1:ENST00000595164.5:ENST00000600873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	74	2	2.16424	2.288005	2.41177	0.0123032	0.00235332	0.0705839	0.0215127
chr16	8893236	8893331	15844372	0	-	0.368421	(0.36,0.39]	chr16	1265410	13	UTR3	UTR3:EXON_MRNA	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.08671	2.287965	2.48922	0.01635	0.0110399	0.0867615	0.0652374
chr6	7882855	7882951	7587984	0	-	0.364583	(0.36,0.39]	chr6	578854	15	UTR3	UTR3:EXON_MRNA	TXNDC5:BLOC1S5-TXNDC5	ENSG00000239264.9:ENSG00000259040.5	ENST00000379757.9:ENST00000460138.5:ENST00000439343.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	2.08671	2.287965	2.48922	0.01635	0.0110399	0.0867615	0.0652374
chr6	107871406	107871505	7881556	0	-	0.333333	(0.33,0.36]	chr6	603337	38	UTR3	UTR3:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000459782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	21	2	1.82394	2.2879300000000002	2.75192	0.0494504	0.00318114	0.18557	0.0267094
chr1	37574664	37574743	947311	0	-	0.43038	(0.42,0.455]	chr1	99535	1	CDS	CDS:EXON_MRNA	GNL2	ENSG00000134697.13	ENST00000373062.8	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.03532	2.287875	2.54043	0.040947	0.00705852	0.163285	0.047732
chr12	95861167	95861230	13026664	0	+	0.444444	(0.42,0.455]	chr12	1014075	1	CDS	CDS:EXON_MRNA	SNRPF	ENSG00000139343.10	ENST00000266735.9:ENST00000551316.1:ENST00000553192.5:ENST00000552085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	2.03532	2.287875	2.54043	0.040947	0.00705852	0.163285	0.047732
chr17	29262238	29262338	16490891	0	-	0.45	(0.42,0.455]	chr17	1348880	65	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.03532	2.287875	2.54043	0.040947	0.00705852	0.163285	0.047732
chr4	165342133	165342227	5206958	0	+	0.287234	[0,0.29]	chr4	420285	3	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.15488	2.28773	2.42058	0.0436536	0.00490744	0.170594	0.0366648
chr9	107330614	107330709	10410552	0	+	0.263158	[0,0.29]	chr9	784033	11	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.15488	2.28773	2.42058	0.0436536	0.00490744	0.170594	0.0366648
chr7	75423103	75423203	8858984	0	-	0.62	(0.59,1]	chr7	676969	17	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000607367.5:ENST00000473609.5:ENST00000473168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	45	2	1.96394	2.28772	2.6115	0.0453144	0.00584247	0.174798	0.0422426
chr3	4979961	4980031	3277604	0	+	0.528571	(0.49,0.53]	chr3	288705	1	CDS	CDS:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4:ENST00000467610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	35	2	1.4742	2.28765	3.1011	0.0502928	5.69237e-4	0.180775	0.00778538
chr11	86012336	86012392	12526279	0	-	0.375	(0.36,0.39]	chr11	972245	2	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531771.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	66	2	1.91484	2.28745	2.66006	0.00697505	4.49638e-5	0.0474916	9.41035e-4
chr11	66276138	66276238	11989565	0	+	0.64	(0.59,1]	chr11	921605	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.96416	2.2874499999999998	2.61074	0.044741	0.025486	0.166115	0.117089
chr6	27255967	27256060	7104287	0	+	0.473118	(0.455,0.49]	chr6	543351	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRSS16	ENSG00000112812.16	ENST00000230582.8:ENST00000421826.6:ENST00000377456.6:ENST00000485603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	23	2	1.72305	2.287385	2.85172	0.0324537	0.010864	0.134899	0.0643837
chr19	11450788	11450878	17231284	0	+	0.644444	(0.59,1]	chr19	1419944	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKCSH	ENSG00000130175.10	ENST00000592741.5:ENST00000677123.1:ENST00000591462.6:ENST00000587327.5:ENST00000589838.5:ENST00000586486.1:ENST00000591510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	2.01575	2.2870600000000003	2.55837	0.0201728	0.00709491	0.0978331	0.0479177
chr7	121140826	121140919	8495265	0	+	0.344086	(0.33,0.36]	chr7	648396	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	31	133	2	1.23093	2.287035	3.34314	0.0291006	2.05936e-8	0.129773	1.44156e-6
chr12	54351562	54351657	12892170	0	+	0.473684	(0.455,0.49]	chr12	1003028	12	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000262061.7	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	2.04847	2.2869450000000002	2.52542	0.0192065	3.01597e-4	0.0943643	0.00439897
chr11	46383666	46383766	11935319	0	+	0.52	(0.49,0.53]	chr11	912498	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MDK	ENSG00000110492.16	ENST00000405308.6:ENST00000359803.7:ENST00000617138.4:ENST00000395569.8:ENST00000395566.9:ENST00000395565.5:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	62	2	1.81941	2.286875	2.75434	0.0158768	6.94876e-5	0.0854674	0.00134429
chr1	112913598	112913695	1232312	0	-	0.298969	(0.29,0.33]	chr1	120455	19	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	9	28	2	1.62519	2.286815	2.94844	0.0201432	0.00217122	0.0984041	0.0208941
chr2	110667612	110667705	2838230	0	-	0.387097	(0.36,0.39]	chr2	253366	2	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000468927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	33	2	2.10159	2.286765	2.47194	0.00841765	0.00204665	0.0543584	0.0200766
chr7	92123733	92123793	8922206	0	-	0.333333	(0.33,0.36]	chr7	680653	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CYP51A1:CTB-161K23.4	ENSG00000001630.17:ENSG00000285772.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000422867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	52	2	2.01701	2.2867249999999997	2.55644	0.00697043	1.53305e-4	0.0474694	0.0025552
chr17	17264801	17264891	16464366	0	-	0.344444	(0.33,0.36]	chr17	1344509	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	COPS3	ENSG00000141030.13	ENST00000268717.10:ENST00000539941.6:ENST00000578317.5:ENST00000439936.6:ENST00000486810.5:ENST00000577210.5:ENST00000417352.5:ENST00000584216.5:ENST00000583160.5:ENST00000492672.5:ENST00000477299.5:ENST00000577246.5:ENST00000495640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	24	2	2.10153	2.28658	2.47163	0.0129725	0.00871844	0.0724783	0.0560911
chr14	102727495	102727593	14500042	0	+	0.479592	(0.455,0.49]	chr14	1133640	11	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	2.27152	2.286455	2.30139	0.0530131	0.00786769	0.195536	0.0514287
chr7	54755778	54755829	8823830	0	-	0.294118	(0.29,0.33]	chr7	673285	1	CDS	CDS:EXON_MRNA	SEC61G	ENSG00000132432.14	ENST00000395535.7:ENST00000415949.5:ENST00000352861.9:ENST00000450622.1:ENST00000460484.5:ENST00000480303.1:ENST00000461536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	27	2	1.36905	2.28636	3.20367	0.0494899	6.11481e-4	0.178101	0.00818575
chr19	14515353	14515451	17480908	0	-	0.5	(0.49,0.53]	chr19	1464580	7	UTR3	UTR3:EXON_MRNA	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000254322.3:ENST00000676577.1:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000595139.2:ENST00000598235.2:ENST00000601533.6:ENST00000677204.1:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.78308	2.28635	2.78962	0.0425234	0.0129044	0.167547	0.0725185
chr1	2308538	2308636	7391	0	+	0.346939	(0.33,0.36]	chr1	1667	19	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.28465	2.2862850000000003	2.28792	0.0239159	0.0188404	0.112531	0.0958835
chr18	35337231	35337331	17076689	0	-	0.35	(0.33,0.36]	chr18	1402843	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.28465	2.2862850000000003	2.28792	0.0239159	0.0188404	0.112531	0.0958835
chr1	45014785	45014836	174350	0	+	0.588235	(0.53,0.59]	chr1	22552	2	CDS	CDS:UTR3:EXON_MRNA	UROD	ENSG00000126088.14	ENST00000652165.1:ENST00000651476.1:ENST00000636293.1:ENST00000636836.1:ENST00000652287.1:ENST00000491773.6:ENST00000494399.5:ENST00000246337.9:ENST00000469548.5:ENST00000486699.5:ENST00000478467.5:ENST00000428106.1:ENST00000652514.1:ENST00000472254.1:ENST00000466193.1:ENST00000465678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	25	2	2.05734	2.2861700000000003	2.515	0.0292633	0.0167029	0.129773	0.0883198
chr22	20951796	20951893	18300201	0	+	0.453608	(0.42,0.455]	chr22	1553647	21	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	79	2	1.86877	2.2860899999999997	2.70341	0.00206658	1.05285e-4	0.0194849	0.00204038
chr11	110230702	110230799	12597163	0	-	0.309278	(0.29,0.33]	chr11	976511	14	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	27	2	2.11593	2.28592	2.45591	0.00799071	0.00406506	0.0527444	0.032143
chr3	23919107	23919195	3358556	0	+	0.386364	(0.36,0.39]	chr3	294134	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000643707.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	21	2	1.78505	2.28582	2.78659	0.0228572	0.0132982	0.108215	0.0740932
chr11	5301013	5301113	12241096	0	-	0.41	(0.39,0.42]	chr11	946133	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B4	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000183251.4	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000380224.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	40	2	1.79377	2.285785	2.7778	0.0299302	2.79638e-4	0.129773	0.0041355
chr3	183679582	183679680	3946035	0	+	0.306122	(0.29,0.33]	chr3	331446	4	UTR3	UTR3:EXON_MRNA	KLHL24	ENSG00000114796.16	ENST00000242810.11:ENST00000454652.6	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.89849	2.28563	2.67277	0.0255386	0.0197274	0.117089	0.0983378
chr9	83661403	83661498	10710358	0	-	0.252632	[0,0.29]	chr9	810178	16	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	27	2	1.72144	2.285615	2.84979	0.0389538	6.05262e-4	0.158558	0.00756349
chr6	36602086	36602184	7134599	0	+	0.346939	(0.33,0.36]	chr6	549605	2	UTR3	UTR3:EXON_MRNA	SRSF3	ENSG00000112081.17	ENST00000373715.11:ENST00000620941.1:ENST00000620389.1:ENST00000614136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	44	2	2.07183	2.28561	2.49939	0.00373558	6.86704e-4	0.0312668	0.00839272
chr16	30723779	30723877	15631063	0	+	0.591837	(0.59,1]	chr16	1240525	3	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	53	2	1.90752	2.28513	2.66274	0.0282297	0.00482151	0.127287	0.0365653
chr17	48895155	48895238	16255800	0	+	0.590361	(0.59,1]	chr17	1317515	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ATP5MC1	ENSG00000159199.14	ENST00000355938.9:ENST00000513347.1:ENST00000393366.7:ENST00000503641.5:ENST00000514808.5:ENST00000506855.1:ENST00000513781.5:ENST00000504591.2:ENST00000502964.5:ENST00000515060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	53	2	2.06696	2.28509	2.50322	0.0170848	0.00863444	0.0897702	0.0556009
chr10	68963290	68963379	11093198	0	+	0.47191	(0.455,0.49]	chr10	843234	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	9	38	2	1.55542	2.28476	3.0141	0.0239018	9.3076e-4	0.109882	0.0111917
chr5	113020611	113020710	6153965	0	+	0.373737	(0.36,0.39]	chr5	480731	73	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.7286	2.284745	2.84089	0.0227476	0.0128123	0.105293	0.0719798
chr19	28466590	28466685	17525479	0	-	0.557895	(0.53,0.59]	chr19	1470935	3	EXON_LNCRNA	EXON_LNCRNA	AC005307.5:AC005307.4	ENSG00000283403.1:ENSG00000267243.6	ENST00000592347.5:ENST00000593065.5:ENST00000592716.1:ENST00000591920.5:ENST00000585697.1	lncRNA	lncRNA	lncRNA	lncRNA	5	32	2	2.2596	2.28474	2.30988	0.0185443	0.00643853	0.0948733	0.0452349
chr17	42125603	42125692	16545938	0	-	0.550562	(0.53,0.59]	chr17	1356948	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-2132N18.3:RAB5C	ENSG00000267261.5:ENSG00000108774.15	ENST00000592574.1:ENST00000592248.5:ENST00000585562.5:ENST00000393860.7:ENST00000346213.9:ENST00000547517.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	32	2	1.76849	2.284545	2.8006	0.0420665	0.00233666	0.158792	0.0221314
chr12	54239558	54239658	13342922	0	-	0.38	(0.36,0.39]	chr12	1049602	82	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	11	47	2	1.86118	2.28445	2.70772	0.0121414	1.92058e-4	0.0699297	0.00305488
chr2	167934305	167934404	2998973	0	-	0.373737	(0.36,0.39]	chr2	265456	332	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	11	47	2	1.86118	2.28445	2.70772	0.0121414	1.92058e-4	0.0699297	0.00305488
chr15	41768656	41768754	14888963	0	+	0.438776	(0.42,0.455]	chr15	1169798	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MGA	ENSG00000174197.17	ENST00000566586.6:ENST00000219905.12:ENST00000568255.2:ENST00000682598.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.20599	2.28423	2.36247	0.0462889	0.0227797	0.176878	0.105293
chr2	131146971	131147070	2065728	0	+	0.424242	(0.42,0.455]	chr2	194095	3	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000409158.5:ENST00000234115.10:ENST00000628582.2:ENST00000438882.6:ENST00000404460.5:ENST00000409612.5:ENST00000409279.1	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.20599	2.28423	2.36247	0.0462889	0.0227797	0.176878	0.105293
chr2	181060664	181060738	2242288	0	+	0.445946	(0.42,0.455]	chr2	204432	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	UBE2E3	ENSG00000170035.16	ENST00000602303.5:ENST00000602959.5:ENST00000602479.5:ENST00000392415.6:ENST00000602291.5:ENST00000410062.9:ENST00000602710.5:ENST00000602762.5:ENST00000602888.5:ENST00000602837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.20599	2.28423	2.36247	0.0462889	0.0227797	0.176878	0.105293
chr21	14486062	14486114	18163804	0	-	0.423077	(0.42,0.455]	chr21	1542430	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.20599	2.28423	2.36247	0.0462889	0.0227797	0.176878	0.105293
chr5	97036215	97036315	6118953	0	+	0.43	(0.42,0.455]	chr5	478869	78	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.20599	2.28423	2.36247	0.0462889	0.0227797	0.176878	0.105293
chr8	30066847	30066918	9780490	0	-	0.450704	(0.42,0.455]	chr8	739513	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	SARAF	ENSG00000133872.14	ENST00000256255.11:ENST00000545648.2:ENST00000518174.5:ENST00000521265.5:ENST00000520303.5:ENST00000523127.5:ENST00000518340.1:ENST00000518296.5:ENST00000521934.1:ENST00000522794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	17	2	2.20599	2.28423	2.36247	0.0462889	0.0227797	0.176878	0.105293
chr1	32171291	32171391	127021	0	+	0.53	(0.49,0.53]	chr1	15636	5	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	5	28	2	2.26641	2.2841500000000003	2.30189	0.0190546	0.00685554	0.093872	0.0471063
chr1	193088159	193088258	631200	0	+	0.373737	(0.36,0.39]	chr1	64149	33	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	11	46	2	1.952	2.284005	2.61601	0.00826903	3.36245e-4	0.0542098	0.00474861
chr11	14468680	14468770	12281666	0	-	0.455556	(0.455,0.49]	chr11	949603	1	CDS	CDS:EXON_MRNA	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	20	66	2	1.39744	2.284	3.17056	0.0117524	4.1243e-4	0.068852	0.00604953
chr12	124778276	124778371	13600144	0	-	0.6	(0.59,1]	chr12	1071667	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.24397	2.283905	2.32384	0.0206682	0.0157639	0.0997234	0.0851539
chrX	65740184	65740281	18716367	0	+	0.494845	(0.49,0.53]	chrX	1596885	4	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	18	91	2	1.90799	2.28377	2.65955	0.00250584	4.52255e-5	0.0233954	9.44585e-4
chr5	75360638	75360737	6037173	0	+	0.373737	(0.36,0.39]	chr5	473669	4	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	20	2	1.72655	2.2837199999999998	2.84089	0.033108	0.0128123	0.13754	0.0719798
chr3	197954002	197954074	3992988	0	+	0.527778	(0.49,0.53]	chr3	336618	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL35A	ENSG00000182899.17	ENST00000647248.2:ENST00000448864.6:ENST00000485439.5:ENST00000642387.1:ENST00000329092.12:ENST00000429437.5:ENST00000442341.5:ENST00000439255.1:ENST00000474640.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	76	382	2	2.12524	2.2835599999999996	2.44188	5.44515e-5	1.93148e-6	0.00121201	6.97505e-5
chr1	186344510	186344578	1412053	0	-	0.411765	(0.39,0.42]	chr1	142894	3	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	2.18155	2.283525	2.3855	0.0283931	0.0049615	0.127654	0.0368419
chr22	21764140	21764240	18442392	0	-	0.56	(0.53,0.59]	chr22	1572508	46	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000491588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	132	2	2.26327	2.28341	2.30355	2.45232e-4	1.49384e-4	0.00402374	0.0024973
chr16	83811519	83811618	15786952	0	+	0.363636	(0.36,0.39]	chr16	1256107	2	UTR3	UTR3:EXON_MRNA:INTRON	HSBP1	ENSG00000230989.7	ENST00000433866.7:ENST00000570259.1:ENST00000569301.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	75	2	2.26389	2.28336	2.30283	4.36378e-4	3.14492e-4	0.00624085	0.00452711
chr11	66363435	66363535	12424273	0	-	0.63	(0.59,1]	chr11	964611	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	42	2	2.06696	2.2831799999999998	2.4994	0.0333573	0.0170848	0.137922	0.0897702
chr5	154814778	154814875	6315018	0	+	0.319588	(0.29,0.33]	chr5	492515	8	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.99415	2.28317	2.57219	0.0333928	9.93325e-4	0.140128	0.0111014
chr14	101987542	101987632	14495173	0	+	0.444444	(0.42,0.455]	chr14	1132981	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1:ENST00000681321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	32	2	1.65244	2.283085	2.91373	0.0163345	0.00892357	0.0867615	0.0567495
chr20	35652323	35652423	17954980	0	-	0.37	(0.36,0.39]	chr20	1521105	35	UTR3	UTR3:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000317677.9:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	31	2	2.16717	2.283075	2.39898	0.0152504	0.00221341	0.0828908	0.0204985
chr12	29390374	29390472	12810651	0	+	0.316327	(0.29,0.33]	chr12	994754	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	OVCH1-AS1	ENSG00000257599.3	ENST00000641955.1:ENST00000551108.1:ENST00000550906.2	lncRNA	lncRNA	lncRNA	lncRNA	10	34	2	1.99389	2.2830399999999997	2.57219	0.00896841	9.93325e-4	0.0569518	0.0111014
chr3	170244781	170244881	3878545	0	+	0.47	(0.455,0.49]	chr3	328593	1	EXON_SMALL	EXON_SMALL:INTRON	PRKCI:Y_RNA	ENSG00000163558.13:ENSG00000200118.1	ENST00000295797.5:ENST00000363248.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	46	209	2	2.20685	2.28302	2.35919	4.93025e-5	1.5809500000000002e-05	0.00112166	4.0263e-4
chr6	31806074	31806142	7662685	0	-	0.441176	(0.42,0.455]	chr6	585369	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5:ENST00000475835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	51	2	2.07164	2.28288	2.49412	0.0101168	3.62613e-4	0.0626311	0.00507539
chr9	137242879	137242975	10515403	0	+	0.614583	(0.59,1]	chr9	797249	5	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	173	2	1.71552	2.2828749999999998	2.85023	0.00787098	5.71859e-5	0.0514481	0.00126854
chr15	78897456	78897554	15042659	0	+	0.367347	(0.36,0.39]	chr15	1183475	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000561171.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	47	2	2.09786	2.282815	2.46777	0.00658605	4.3886e-4	0.0454205	0.00591388
chr12	101714574	101714645	13048844	0	+	0.366197	(0.36,0.39]	chr12	1016506	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	47	2	1.46012	2.28259	3.10506	0.0140845	7.38785e-4	0.0771411	0.00924579
chr12	51055894	51055957	12876119	0	+	0.349206	(0.33,0.36]	chr12	1000577	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LETMD1	ENSG00000050426.16	ENST00000551477.5:ENST00000547318.5:ENST00000552430.5:ENST00000553175.5:ENST00000550929.5:ENST00000550446.5:ENST00000550755.5:ENST00000547029.5:ENST00000550442.5:ENST00000549340.5:ENST00000262055.9:ENST00000547555.5:ENST00000547660.5:ENST00000550814.5:ENST00000550715.5:ENST00000548251.5:ENST00000548209.5:ENST00000418425.6:ENST00000549686.5:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000552433.1:ENST00000546814.1:ENST00000551931.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	43	2	1.96645	2.282585	2.59872	0.0197415	2.02519e-4	0.095966	0.00318597
chr10	79313121	79313214	11148578	0	+	0.623656	(0.59,1]	chr10	847409	5	UTR3	UTR3:EXON_MRNA:INTRON	ZMIZ1	ENSG00000108175.18	ENST00000334512.10:ENST00000611351.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.04362	2.28256	2.5215	0.036186	0.032241	0.145024	0.135671
chr17	82088968	82089036	16710796	0	-	0.720588	(0.59,1]	chr17	1378217	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.04362	2.28256	2.5215	0.036186	0.032241	0.145024	0.135671
chr2	202880659	202880759	3128676	0	-	0.25	[0,0.29]	chr2	276613	65	UTR3	UTR3:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000467777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	21	2	1.88543	2.28248	2.67953	0.0226603	0.0046416	0.10742	0.0354333
chr11	118750316	118750414	12625430	0	-	0.418367	(0.39,0.42]	chr11	979521	27	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.87119	2.282465	2.69374	0.0373134	0.00386013	0.152293	0.0310764
chr12	120127663	120127755	13578983	0	-	0.402174	(0.39,0.42]	chr12	1068517	6	UTR3	UTR3:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.87119	2.282465	2.69374	0.0373134	0.00386013	0.152293	0.0310764
chr17	40411404	40411455	16538998	0	-	0.392157	(0.39,0.42]	chr17	1354671	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.87119	2.282465	2.69374	0.0373134	0.00386013	0.152293	0.0310764
chr1	42702076	42702172	161435	0	+	0.322917	(0.29,0.33]	chr1	20256	2	UTR3	UTR3:EXON_MRNA	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000436427.1	protein_coding	protein_coding	protein_coding	protein_coding	16	46	2	1.74582	2.282395	2.81897	0.00655853	2.43076e-4	0.0454205	0.00367789
chr6	32180606	32180699	7118669	0	+	0.397849	(0.39,0.42]	chr6	547014	4	UTR3	UTR3:EXON_MRNA	RNF5	ENSG00000204308.8	ENST00000375094.4	protein_coding	protein_coding	protein_coding	protein_coding	18	76	2	2.08453	2.28239	2.48025	9.32403e-4	1.79109e-4	0.0105551	0.00312723
chr7	128697709	128697744	8521293	0	+	0.571429	(0.53,0.59]	chr7	650090	1	EXON_SMALL	EXON_SMALL	RNA5SP243	ENSG00000252866.1	ENST00000517057.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	14	75	2	1.75665	2.282155	2.80766	0.00526962	2.30272e-4	0.0389109	0.00382267
chr8	140520354	140520454	10132046	0	-	0.3	(0.29,0.33]	chr8	760954	3	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.17855	2.282155	2.38576	0.0439193	0.0183673	0.163572	0.0928041
chrX	20150109	20150209	18985579	0	-	0.33	(0.29,0.33]	chrX	1616690	3	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.17855	2.282155	2.38576	0.0439193	0.0183673	0.163572	0.0928041
chr18	35332912	35333011	17076645	0	-	0.323232	(0.29,0.33]	chr18	1402842	8	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.89143	2.2821	2.67277	0.0332921	0.0255386	0.137922	0.117089
chr9	122849427	122849526	10841423	0	-	0.323232	(0.29,0.33]	chr9	821358	50	UTR3	UTR3:EXON_MRNA	RC3H2	ENSG00000056586.16	ENST00000357244.7:ENST00000373670.5:ENST00000498479.5:ENST00000454740.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	1.89143	2.2821	2.67277	0.0332921	0.0255386	0.137922	0.117089
chr3	19984788	19984885	3342026	0	+	0.391753	(0.39,0.42]	chr3	293699	11	UTR3	UTR3:EXON_MRNA	RAB5A	ENSG00000144566.11	ENST00000273047.9	protein_coding	protein_coding	protein_coding	protein_coding	14	62	2	2.24454	2.2819900000000004	2.31944	0.00181306	4.24978e-4	0.0183913	0.00576904
chr17	47652784	47652876	16251655	0	+	0.413043	(0.39,0.42]	chr17	1316645	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000577918.5:ENST00000577875.5:ENST00000540627.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	43	2	2.02663	2.281865	2.5371	0.0130764	5.20981e-4	0.0729985	0.00674037
chr1	228098112	228098212	744034	0	+	0.47	(0.455,0.49]	chr1	75099	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000478424.5:ENST00000470558.5:ENST00000478336.5:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	76	355	2	2.20984	2.28178	2.35372	3.61166e-5	3.39362e-6	8.73633e-4	1.12087e-4
chr1	161961115	161961214	503841	0	+	0.50505	(0.49,0.53]	chr1	54599	26	UTR3	UTR3:EXON_MRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000367942.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.69633	2.281715	2.8671	0.0531914	0.0100489	0.184818	0.0623334
chr19	55662169	55662251	17397223	0	+	0.52439	(0.49,0.53]	chr19	1448905	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000592874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	18	2	2.18239	2.2816799999999997	2.38097	0.0425419	0.024394	0.167547	0.111797
chr22	30978019	30978117	18344867	0	+	0.387755	(0.36,0.39]	chr22	1559168	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	27	2	2.02118	2.2816150000000004	2.54205	0.0251625	0.00253891	0.117055	0.0227257
chr3	155916105	155916192	3824436	0	+	0.45977	(0.455,0.49]	chr3	326195	2	CDS	CDS:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	2.12994	2.2815399999999997	2.43314	0.0304832	3.19296e-4	0.130204	0.00457916
chrM	10469	10569	19377245	0	+	0.38	(0.36,0.39]	chrM	1649822	1	CDS_START	CDS_START:CDS:EXON_MRNA	MT-ND4L	ENSG00000212907.2	ENST00000361335.1	protein_coding	protein_coding	protein_coding	protein_coding	207	764	2	2.23666	2.28145	2.32624	3.79796e-6	9.61471e-7	1.2334e-4	4.28565e-5
chr1	23787851	23787946	98992	0	+	0.484211	(0.455,0.49]	chr1	11526	6	UTR3	UTR3:EXON_MRNA	PITHD1	ENSG00000057757.10	ENST00000246151.9:ENST00000374524.1	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	1.96949	2.28139	2.59329	0.00919557	7.86326e-4	0.0582809	0.00929193
chr5	126832747	126832801	6202812	0	+	0.518519	(0.49,0.53]	chr5	483227	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	30	2	1.56417	2.28133	2.99849	0.0289719	0.00630123	0.127437	0.0445415
chr2	43224608	43224703	2618850	0	-	0.684211	(0.59,1]	chr2	235740	3	CDS	CDS:EXON_MRNA	ZFP36L2	ENSG00000152518.8	ENST00000282388.4	protein_coding	protein_coding	protein_coding	protein_coding	5	53	2	1.8502	2.2812099999999997	2.71222	0.0334531	0.00398753	0.140296	0.031888
chr21	33577209	33577300	18101457	0	+	0.296703	(0.29,0.33]	chr21	1534606	8	UTR3	UTR3:EXON_MRNA	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000436227.5:ENST00000478183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	21	2	1.83055	2.281165	2.73178	0.0348758	0.00360855	0.144642	0.0296421
chr11	77616301	77616399	12473505	0	-	0.479592	(0.455,0.49]	chr11	970289	19	UTR3	UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	29	2	1.72305	2.28082	2.83859	0.0324537	0.00215336	0.134899	0.0208395
chr7	16665443	16665501	8148770	0	+	0.482759	(0.455,0.49]	chr7	622111	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	29	2	1.72305	2.28082	2.83859	0.0324537	0.00215336	0.134899	0.0208395
chrX	153693904	153693960	18915623	0	+	0.732143	(0.59,1]	chrX	1611190	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1:ENST00000457723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	61	2	1.58352	2.28077	2.97802	0.0477456	0.00133365	0.179958	0.0139317
chr12	120198638	120198723	13579751	0	-	0.552941	(0.53,0.59]	chr12	1068808	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	44	248	2	2.27225	2.28076	2.28927	5.71098e-5	2.86881e-5	0.00126699	6.53441e-4
chr12	69270997	69271096	12941710	0	+	0.383838	(0.36,0.39]	chr12	1008771	16	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	1.92623	2.28072	2.63521	0.0166541	0.00633242	0.0881353	0.0446708
chr19	808386	808424	17189554	0	+	0.473684	(0.455,0.49]	chr19	1411042	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	1.81931	2.28071	2.74211	0.0235519	0.00330545	0.108737	0.028478
chr5	138435619	138435700	6244657	0	+	0.481481	(0.455,0.49]	chr5	486606	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	1.8708	2.280665	2.69053	0.0324007	0.0182983	0.134751	0.0925808
chr8	102285601	102285691	9982979	0	-	0.466667	(0.455,0.49]	chr8	753214	2	CDS	CDS:EXON_MRNA	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.8708	2.280665	2.69053	0.0324007	0.0182983	0.134751	0.0925808
chr3	37277787	37277887	3411523	0	+	0.43	(0.42,0.455]	chr3	296407	13	INTRON	INTRON	GOLGA4	ENSG00000144674.16	ENST00000361924.6:ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000617480.4:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	57	2	2.14843	2.2806249999999997	2.41282	0.00271028	5.84644e-4	0.0244369	0.00740531
chr6	38676021	38676119	7689630	0	-	0.397959	(0.39,0.42]	chr6	589572	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	147	2	2.17051	2.2804450000000003	2.39038	2.07541e-4	1.99721e-5	0.00351693	4.86348e-4
chr5	126836358	126836453	6202850	0	+	0.305263	(0.29,0.33]	chr5	483234	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	23	2	1.61234	2.28039	2.94844	0.0360321	0.00217122	0.145024	0.0208941
chr22	21762147	21762246	18442372	0	-	0.636364	(0.59,1]	chr22	1572508	26	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	11	108	2	1.80537	2.280245	2.75512	0.00991402	4.62727e-4	0.0620511	0.00613432
chr21	36364175	36364259	18111838	0	+	0.392857	(0.39,0.42]	chr21	1535555	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MORC3	ENSG00000159256.13	ENST00000400485.6:ENST00000487909.5:ENST00000484028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	27	2	1.93908	2.280195	2.62131	0.0154765	0.00609677	0.0836906	0.0439136
chr5	69174329	69174409	6019335	0	+	0.4125	(0.39,0.42]	chr5	471239	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000507798.1	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.93908	2.280195	2.62131	0.0154765	0.00609677	0.0836906	0.0439136
chr1	205713714	205713813	1461992	0	-	0.464646	(0.455,0.49]	chr1	147460	10	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	26	120	2	2.15934	2.28015	2.40096	3.02395e-4	5.58407e-5	0.00472028	0.00112788
chr17	32350202	32350285	16200429	0	+	0.46988	(0.455,0.49]	chr17	1308125	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:PRIMIRNA:INTRON	RP11-227G15.3:MIR632:ZNF207	ENSG00000265794.5:ENSG00000283774.1:ENSG00000010244.19	ENST00000581915.5:ENST00000578389.1:ENST00000385193.1:ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	miRNA	protein_coding	miRNA:protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:primary_miRNA	19	87	2	2.08302	2.28015	2.47728	7.35853e-4	1.61732e-4	0.00881281	0.00288682
chrX	154352771	154352847	19278001	0	-	0.565789	(0.53,0.59]	chrX	1638262	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000474358.5:ENST00000466325.1:ENST00000415241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	70	2	1.93933	2.2800700000000003	2.62081	0.00455262	3.14057e-4	0.0352819	0.00452711
chr1	150577363	150577418	1288951	0	-	0.418182	(0.39,0.42]	chr1	128250	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	2.18155	2.27957	2.37759	0.0428865	0.0283931	0.161091	0.127654
chr16	87831986	87832084	16072448	0	-	0.673469	(0.59,1]	chr16	1291249	21	UTR3	UTR3:EXON_MRNA	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	1.96394	2.279275	2.59461	0.0453144	0.0259455	0.174798	0.117079
chr22	21449496	21449594	18302359	0	+	0.397959	(0.39,0.42]	chr22	1554129	29	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	18	78	2	2.25378	2.2791699999999997	2.30456	7.48045e-4	2.38964e-4	0.00934936	0.00361929
chr3	49099109	49099181	4172441	0	-	0.583333	(0.53,0.59]	chr3	350347	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000637281.1:ENST00000453392.5:ENST00000482248.7:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000634473.1:ENST00000464962.6:ENST00000637113.1:ENST00000459870.6:ENST00000636018.1:ENST00000470113.2:ENST00000637543.1:ENST00000637908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	1.76849	2.2791449999999998	2.7898	0.0420665	0.0128364	0.158792	0.0719798
chr6	126340114	126340193	7388578	0	+	0.531646	(0.53,0.59]	chr6	566380	1	UTR5	UTR5:EXON_MRNA	CENPW	ENSG00000203760.9	ENST00000368328.5:ENST00000368326.5:ENST00000368325.5	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.76849	2.2791449999999998	2.7898	0.0420665	0.0128364	0.158792	0.0719798
chr3	48536324	48536393	4167922	0	-	0.57971	(0.53,0.59]	chr3	349093	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PFKFB4	ENSG00000114268.12	ENST00000232375.8:ENST00000490115.5:ENST00000383734.6:ENST00000416568.5:ENST00000417753.5:ENST00000445633.5:ENST00000452531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	20	2	1.90953	2.27895	2.64837	0.0517711	0.0199467	0.193577	0.0984041
chr5	32228981	32229081	6518020	0	-	0.59	(0.53,0.59]	chr5	504832	21	UTR3	UTR3:EXON_MRNA	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.90953	2.27895	2.64837	0.0517711	0.0199467	0.193577	0.0984041
chr11	66277009	66277106	11989574	0	+	0.618557	(0.59,1]	chr11	921606	9	UTR3	UTR3:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	10	102	2	2.22725	2.278845	2.33044	0.00535937	0.00126677	0.0406564	0.0134549
chr5	56882267	56882367	5977924	0	+	0.42	(0.39,0.42]	chr5	468808	8	CDS	CDS:EXON_MRNA	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.99911	2.278775	2.55844	0.0477207	0.0263695	0.17993	0.117164
chr9	127789927	127790023	10476010	0	+	0.416667	(0.39,0.42]	chr9	789391	5	UTR3	UTR3:EXON_MRNA	CDK9	ENSG00000136807.14	ENST00000373264.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.99911	2.278775	2.55844	0.0477207	0.0263695	0.17993	0.117164
chr20	31665548	31665648	17939741	0	-	0.47	(0.455,0.49]	chr20	1519093	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	30	2	2.15064	2.27864	2.40664	0.0123662	0.00661084	0.0705839	0.046082
chr11	236965	237049	11755971	0	+	0.619048	(0.59,1]	chr11	897560	1	UTR5	UTR5:EXON_MRNA	PSMD13	ENSG00000185627.18	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	41	2	1.96265	2.2786299999999997	2.59461	0.0259455	0.0238491	0.117079	0.112466
chr3	185925561	185925626	4628344	0	-	0.569231	(0.53,0.59]	chr3	382271	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000487615.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1:ENST00000485530.5:ENST00000493864.1:ENST00000477939.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	43	2	2.2596	2.278545	2.29749	0.0185443	0.00181945	0.0948733	0.0183913
chr1	22086724	22086781	93029	0	+	0.385965	(0.36,0.39]	chr1	10790	2	CDS	CDS:UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000651171.1:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	29	2	2.18029	2.2785149999999996	2.37674	0.0077769	0.00529284	0.0517139	0.0390084
chr12	25207420	25207519	13258191	0	-	0.555556	(0.53,0.59]	chr12	1039078	23	UTR3	UTR3:EXON_MRNA	KRAS	ENSG00000133703.13	ENST00000256078.10:ENST00000311936.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.89806	2.2785	2.65894	0.0532477	0.0193255	0.184818	0.0943643
chr17	44011834	44011927	16555919	0	-	0.548387	(0.53,0.59]	chr17	1358813	8	UTR3	UTR3:EXON_MRNA	TMEM101	ENSG00000091947.10	ENST00000589334.5:ENST00000206380.8	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.89806	2.2785	2.65894	0.0532477	0.0193255	0.184818	0.0943643
chr2	191835827	191835922	3089795	0	-	0.589474	(0.53,0.59]	chr2	273158	17	UTR3	UTR3:EXON_MRNA	CAVIN2	ENSG00000168497.5	ENST00000304141.5	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	1.89806	2.2785	2.65894	0.0532477	0.0193255	0.184818	0.0943643
chr22	39875652	39875743	18372063	0	+	0.538462	(0.53,0.59]	chr22	1563474	5	EXON_PSEUDO	EXON_PSEUDO	UQCRFS1P1	ENSG00000226085.3	ENST00000435169.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	3	20	2	1.89806	2.2785	2.65894	0.0532477	0.0193255	0.184818	0.0943643
chr8	143991223	143991323	9649794	0	+	0.59	(0.53,0.59]	chr8	731402	1	CDS_START	CDS_START:CDS:EXON_MRNA	GRINA	ENSG00000178719.17	ENST00000395068.9:ENST00000313269.5:ENST00000529301.5:ENST00000530898.1:ENST00000531992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	1.89806	2.2785	2.65894	0.0532477	0.0193255	0.184818	0.0943643
chr5	146459246	146459337	6281048	0	+	0.472527	(0.455,0.49]	chr5	489531	5	CDS	CDS:EXON_MRNA	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000513298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	69	2	1.95455	2.27847	2.60239	0.00260473	1.87176e-4	0.0238382	0.00299689
chr12	120196872	120196934	13579730	0	-	0.612903	(0.59,1]	chr12	1068799	1	CDS	CDS:UTR3:EXON_MRNA	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000551217.1:ENST00000546989.5:ENST00000313104.9:ENST00000552292.5:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	310	2	2.05927	2.27841	2.49755	6.12528e-4	8.20746e-5	0.00819029	0.00155242
chr4	3518112	3518192	5285701	0	-	0.6	(0.59,1]	chr4	425812	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPAP1	ENSG00000163956.13	ENST00000650182.1:ENST00000296325.9:ENST00000648517.1:ENST00000515119.5:ENST00000509198.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	44	2	2.11074	2.278305	2.44587	0.0305	0.0105307	0.130204	0.0644466
chr16	18791964	18792063	15877065	0	-	0.333333	(0.33,0.36]	chr16	1269296	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	19	83	2	1.65544	2.277965	2.90049	0.0147066	2.83169e-6	0.0802105	9.62519e-5
chr7	73478001	73478096	8853856	0	-	0.452632	(0.42,0.455]	chr7	675937	13	CDS	CDS:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.22933	2.277895	2.32646	0.0102262	0.00624136	0.062872	0.0443844
chr3	196050365	196050464	4663144	0	-	0.333333	(0.33,0.36]	chr3	385550	12	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	47	164	2	2.17613	2.2776750000000003	2.37922	5.14143e-5	1.72014e-5	0.00105101	4.72777e-4
chr5	115615208	115615308	6776998	0	-	0.35	(0.33,0.36]	chr5	519913	21	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	1.57909	2.277575	2.97606	0.0532274	0.00871774	0.184818	0.0558165
chr8	96304110	96304181	9498968	0	+	0.43662	(0.42,0.455]	chr8	722469	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000518776.1:ENST00000522072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	26	2	2.19225	2.27736	2.36247	0.0462889	0.00548036	0.176878	0.0402071
chr6	149726378	149726476	8018876	0	-	0.295918	(0.29,0.33]	chr6	612716	22	UTR3	UTR3:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7	protein_coding	protein_coding	protein_coding	protein_coding	11	38	2	1.67976	2.2771749999999997	2.87459	0.023292	1.72733e-4	0.110214	0.00280648
chr1	8861269	8861359	852364	0	-	0.666667	(0.59,1]	chr1	85899	4	UTR3	UTR3:EXON_MRNA	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	287	2	2.18977	2.277165	2.36456	6.42022e-4	1.0773e-4	0.00850441	0.00192514
chr2	173955454	173955552	3020158	0	-	0.326531	(0.29,0.33]	chr2	267378	7	CDS	CDS:EXON_MRNA	SP3	ENSG00000172845.18	ENST00000650743.1:ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	37	2	1.62619	2.277165	2.92814	0.0358231	1.23255e-4	0.147298	0.00214023
chr21	33504123	33504223	18220326	0	-	0.45	(0.42,0.455]	chr21	1546319	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	34	2	2.07164	2.2771150000000002	2.48259	0.0101168	0.0031851	0.0626311	0.0267166
chr12	14460494	14460585	12745111	0	+	0.472527	(0.455,0.49]	chr12	990777	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATF7IP	ENSG00000171681.13	ENST00000539659.5:ENST00000537653.5:ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000541654.1:ENST00000540793.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	28	2	1.96875	2.27677	2.58479	0.0480352	0.00200187	0.180552	0.0189555
chr13	95310829	95310892	14112216	0	-	0.428571	(0.42,0.455]	chr13	1104504	1	EXON_SMALL	EXON_SMALL	RNY3P8	ENSG00000223298.1	ENST00000411366.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	34	150	2	2.07528	2.2767299999999997	2.47818	1.52206e-4	4.11277e-5	0.0025387	9.69031e-4
chr5	32354819	32354913	6518889	0	-	0.287234	[0,0.29]	chr5	504941	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000502988.5:ENST00000510369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	14	2	1.93716	2.27672	2.61628	0.0548436	0.0101434	0.189511	0.0626311
chrX	111621393	111621489	19174310	0	-	0.510417	(0.49,0.53]	chrX	1630748	19	EXON_PSEUDO	EXON_PSEUDO	EIF4BP7	ENSG00000225031.1	ENST00000432307.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	43	2	1.31778	2.27663	3.23548	0.0453281	2.76544e-4	0.168044	0.00444204
chr3	47870909	47871007	4163954	0	-	0.642857	(0.59,1]	chr3	348527	2	CDS	CDS:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9:ENST00000383736.3	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	2.12995	2.276595	2.42324	0.0116918	0.0032216	0.0686664	0.0269923
chr13	81690006	81690103	13802207	0	+	0.57732000000000006	(0.53,0.59]	chr13	1085685	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	PTMAP5	ENSG00000214182.5	ENST00000607242.1:ENST00000393073.4	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	13	76	2	2.06659	2.276585	2.48658	0.00244421	3.78696e-4	0.0229472	0.00525548
chrX	154351580	154351638	19277982	0	-	0.655172	(0.59,1]	chrX	1638249	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	2.24689	2.27656	2.30623	0.0170607	0.00890458	0.0896731	0.0565003
chr16	74301554	74301652	15739382	0	+	0.438776	(0.42,0.455]	chr16	1253988	1	CDS	CDS:UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	1.58516	2.27652	2.96788	0.0389398	0.00109784	0.158547	0.0119666
chr3	101576488	101576579	4331340	0	-	0.626374	(0.59,1]	chr3	361271	1	EXON_PSEUDO	EXON_PSEUDO	RP11-234A1.1	ENSG00000242299.1	ENST00000496294.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	36	353	2	2.23915	2.2763400000000003	2.31353	2.21916e-4	1.46774e-4	0.00369724	0.00246199
chr18	2572985	2573085	16726007	0	+	0.51	(0.49,0.53]	chr18	1379564	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9:ENST00000575515.1	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	2.01464	2.27607	2.5375	0.0205094	0.00104367	0.0991175	0.0115928
chr1	27407198	27407297	908775	0	-	0.484848	(0.455,0.49]	chr1	95011	31	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.86152	2.2760249999999997	2.69053	0.0182983	0.0133542	0.0925808	0.0743429
chr20	38129045	38129143	17962921	0	-	0.520408	(0.49,0.53]	chr20	1522305	18	UTR3	UTR3:EXON_MRNA	TGM2	ENSG00000198959.12	ENST00000361475.7:ENST00000469269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	31	2	1.76393	2.27583	2.78773	0.0279906	0.00257389	0.123926	0.0235767
chr6	67887461	67887560	7784135	0	-	0.424242	(0.42,0.455]	chr6	596229	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	55	247	2	2.25401	2.2757899999999998	2.29757	2.39277e-5	1.81234e-5	6.20311e-4	4.49999e-4
chr2	73250371	73250438	1885482	0	+	0.552239	(0.53,0.59]	chr2	178574	2	CDS	CDS:EXON_MRNA	CCT7	ENSG00000135624.16	ENST00000540468.5:ENST00000539919.5:ENST00000258091.10:ENST00000398422.2	protein_coding	protein_coding	protein_coding	protein_coding	10	59	2	2.2203	2.27557	2.33084	0.00283321	0.0016462	0.0252865	0.0163443
chr8	53966745	53966842	9832416	0	-	0.340206	(0.33,0.36]	chr8	743907	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	34	2	1.82006	2.275465	2.73087	0.0323353	3.90949e-4	0.135977	0.00538091
chr22	21763542	21763642	18442386	0	-	0.36	(0.33,0.36]	chr22	1572508	40	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	22	83	2	1.25617	2.2751099999999997	3.29405	0.0345094	5.30168e-7	0.143307	2.33131e-5
chr1	23083364	23083445	97791	0	+	0.481481	(0.455,0.49]	chr1	11308	1	UTR3	UTR3:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	31	2	2.24865	2.27502	2.30139	0.0530131	0.00240656	0.195536	0.0217576
chr17	68045839	68045939	16333845	0	+	0.35	(0.33,0.36]	chr17	1325138	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000678388.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2:ENST00000583392.2:ENST00000582898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	52	2	2.22102	2.274635	2.32825	0.00736622	2.92966e-4	0.0490627	0.00430287
chr1	167788920	167789020	524592	0	+	0.52	(0.49,0.53]	chr1	56285	11	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	2.05119	2.2745800000000003	2.49797	0.0360743	0.00843736	0.145024	0.0546021
chr8	47776843	47776913	9815493	0	-	0.457143	(0.455,0.49]	chr8	742462	1	CDS	CDS:EXON_MRNA:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000536429.1:ENST00000536483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	29	2	1.61991	2.27446	2.92901	0.0447186	0.00141135	0.166115	0.0151901
chr1	35872884	35872983	138457	0	+	0.383838	(0.36,0.39]	chr1	17150	26	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.05966	2.2744400000000002	2.48922	0.0366015	0.0110399	0.145024	0.0652374
chr4	143527867	143527945	5136351	0	+	0.371795	(0.36,0.39]	chr4	415847	1	CDS	CDS:EXON_MRNA	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.05966	2.2744400000000002	2.48922	0.0366015	0.0110399	0.145024	0.0652374
chr1	51760689	51760780	191403	0	+	0.43956	(0.42,0.455]	chr1	24508	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	57	2	2.2211	2.2744	2.3277	0.00333145	7.5665e-4	0.0286606	0.00904418
chr3	152465680	152465780	3818535	0	+	0.26	[0,0.29]	chr3	325707	34	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	31	2	2.05508	2.274295	2.49351	0.00812605	0.0015585	0.0534435	0.0156889
chr2	167933407	167933507	2998964	0	-	0.47	(0.455,0.49]	chr2	265456	323	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	39	2	2.25667	2.2741100000000003	2.29155	0.00445666	0.00354718	0.0346553	0.0291792
chr16	29666020	29666120	15626170	0	+	0.59	(0.53,0.59]	chr16	1239197	12	UTR3	UTR3:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	47	2	1.90942	2.2740650000000002	2.63871	0.0105233	0.00148857	0.0644466	0.0159153
chr2	44332557	44332656	2624269	0	-	0.454545	(0.42,0.455]	chr2	236353	2	CDS	CDS:EXON_MRNA:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5:ENST00000409272.5:ENST00000260648.10:ENST00000410081.5:ENST00000378520.7:ENST00000378511.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.20599	2.27395	2.34191	0.0227797	0.0159091	0.105293	0.0854674
chr2	65088395	65088492	2708071	0	-	0.371134	(0.36,0.39]	chr2	241346	17	UTR3	UTR3:EXON_MRNA:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	47	2	1.99042	2.2739000000000003	2.55738	0.00277583	0.0013225	0.0241009	0.0144203
chr19	34366782	34366851	17300210	0	+	0.623188	(0.59,1]	chr19	1429828	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000587521.7:ENST00000587384.6:ENST00000592277.5:ENST00000642240.1:ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000646312.1:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	80	2	2.01236	2.273895	2.53543	0.00765638	0.00300931	0.0503696	0.026728
chr14	102001534	102001607	14495337	0	+	0.39726	(0.39,0.42]	chr14	1133045	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	44	2	1.63008	2.273825	2.91757	0.0358647	1.19356e-4	0.147298	0.00208353
chr4	77048121	77048218	5479171	0	-	0.371134	(0.36,0.39]	chr4	439254	11	UTR3	UTR3:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	1.91184	2.273525	2.63521	0.00633242	0.00554415	0.0446708	0.0405292
chr10	84152441	84152535	11164623	0	+	0.340426	(0.33,0.36]	chr10	848162	2	UTR3	UTR3:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	23	92	2	1.58272	2.273455	2.96419	0.0107082	1.64882e-6	0.064368	6.0825e-5
chr12	56746067	56746167	13352837	0	-	0.44	(0.42,0.455]	chr12	1051926	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	1.95205	2.273335	2.59462	0.0248244	0.0062772	0.113644	0.0445415
chr6	154801970	154802058	7501713	0	+	0.443182	(0.42,0.455]	chr6	572857	1	CDS	CDS:EXON_MRNA	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.95205	2.273335	2.59462	0.0248244	0.0062772	0.113644	0.0445415
chr10	45985382	45985441	11026370	0	+	0.457627	(0.455,0.49]	chr10	839297	1	CDS	CDS:EXON_MRNA	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.27152	2.2732200000000002	2.27492	0.0193827	0.00786769	0.0943643	0.0514287
chr8	47912485	47912562	9816931	0	-	0.480519	(0.455,0.49]	chr8	742803	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.27152	2.2732200000000002	2.27492	0.0193827	0.00786769	0.0943643	0.0514287
chr11	9409927	9410006	11792509	0	+	0.417722	(0.39,0.42]	chr11	902826	1	CDS	CDS:UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	40	2	1.49151	2.27306	3.05461	0.0209416	8.55091e-4	0.101311	0.0105173
chr15	57286455	57286555	14950139	0	+	0.3	(0.29,0.33]	chr15	1174949	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000557843.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1:ENST00000560191.1:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	18	2	2.17855	2.2729850000000003	2.36742	0.0183673	0.0147368	0.0928041	0.0801529
chr16	69697941	69698040	15725338	0	+	0.313131	(0.29,0.33]	chr16	1252140	17	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	18	2	2.17855	2.2729850000000003	2.36742	0.0183673	0.0147368	0.0928041	0.0801529
chr9	89316610	89316703	10349742	0	+	0.301075	(0.29,0.33]	chr9	779005	3	UTR3	UTR3:EXON_MRNA	CKS2	ENSG00000123975.5	ENST00000314355.7	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.17855	2.2729850000000003	2.36742	0.0183673	0.0147368	0.0928041	0.0801529
chr1	29117209	29117307	121621	0	+	0.520408	(0.49,0.53]	chr1	14751	5	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	109	2	2.26638	2.272675	2.27897	4.15657e-4	1.3383e-4	0.00608448	0.00229039
chr1	1574477	1574557	828193	0	-	0.6625	(0.59,1]	chr1	82541	1	CDS_START	CDS_START:CDS:EXON_MRNA	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	33	2	2.11894	2.272665	2.42639	0.0409084	0.0293157	0.163285	0.128478
chr19	2039116	2039215	17421460	0	-	0.636364	(0.59,1]	chr19	1453118	14	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000591142.5:ENST00000589441.5:ENST00000250896.9:ENST00000587416.5:ENST00000588014.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.11894	2.272665	2.42639	0.0409084	0.0293157	0.163285	0.128478
chr1	33010329	33010429	924424	0	-	0.42	(0.39,0.42]	chr1	97512	25	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	95	2	1.35176	2.272615	3.19347	0.0187526	1.29858e-6	0.0934721	4.99504e-5
chr1	173488719	173488815	548630	0	+	0.3125	(0.29,0.33]	chr1	58305	10	UTR3	UTR3:EXON_MRNA	PRDX6	ENSG00000117592.9	ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding	12	41	2	2.05621	2.272535	2.48886	0.0055888	0.00156545	0.0419759	0.0156889
chr17	7651122	7651221	16106115	0	+	0.464646	(0.455,0.49]	chr17	1297096	3	UTR5	UTR5:EXON_MRNA:INTRON	ATP1B2	ENSG00000129244.9	ENST00000577026.5:ENST00000250111.9	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.69295	2.272335	2.85172	0.018341	0.010864	0.0945306	0.0643837
chr5	69171269	69171360	6019304	0	+	0.483516	(0.455,0.49]	chr5	471233	1	CDS	CDS:UTR3:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000506572.5:ENST00000256442.10:ENST00000508407.5:ENST00000505500.5:ENST00000503507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	1.53019	2.272145	3.0141	0.0428973	9.3076e-4	0.161091	0.0111917
chr12	120200783	120200873	13579779	0	-	0.622222	(0.59,1]	chr12	1068823	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1:ENST00000551783.1:ENST00000551336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	85	809	2	2.11725	2.2721099999999996	2.42697	1.22365e-4	3.14282e-5	0.00212711	7.72298e-4
chr16	88732334	88732401	16074600	0	-	0.507463	(0.49,0.53]	chr16	1291708	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	9	52	2	1.46766	2.27198	3.0763	0.0523669	4.23786e-5	0.194793	8.98949e-4
chr5	177331912	177331998	6991039	0	-	0.372093	(0.36,0.39]	chr5	534716	5	UTR3	UTR3:EXON_MRNA	LMAN2	ENSG00000169223.15	ENST00000303127.12:ENST00000504071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	2.16717	2.271955	2.37674	0.0152504	0.00529284	0.0828908	0.0390084
chr1	156526091	156526190	1315578	0	-	0.545455	(0.53,0.59]	chr1	133633	8	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	20	2	2.0289	2.2719500000000004	2.515	0.0373899	0.0292633	0.146698	0.129773
chr19	1090907	1090988	17417465	0	-	0.580247	(0.53,0.59]	chr19	1452112	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000590060.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	20	2	2.0289	2.2719500000000004	2.515	0.0373899	0.0292633	0.146698	0.129773
chr12	93487564	93487664	13019442	0	+	0.4	(0.39,0.42]	chr12	1013481	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6:ENST00000393128.8:ENST00000552326.5:ENST00000358678.7:ENST00000547098.5:ENST00000551396.5:ENST00000549561.6:ENST00000548545.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	38	2	1.79517	2.27173	2.74829	0.0144811	8.96426e-4	0.0790402	0.0102618
chr3	100748704	100748790	3637804	0	+	0.337209	(0.33,0.36]	chr3	311888	3	UTR3	UTR3:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000481203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	34	2	1.76184	2.271395	2.78095	0.00863184	0.00388614	0.0556009	0.0322851
chr1	109592939	109593038	399345	0	+	0.343434	(0.33,0.36]	chr1	38901	7	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	10	45	2	1.82006	2.271335	2.72261	0.0323353	9.0019e-5	0.135977	0.0016684
chr22	21867600	21867680	18443439	0	-	0.775	(0.59,1]	chr22	1572557	3	UTR5	UTR5:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	2.11894	2.27109	2.42324	0.0293157	0.0116918	0.128478	0.0686664
chr18	6462721	6462816	17007689	0	-	0.421053	(0.42,0.455]	chr18	1397496	7	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	3	16	2	2.03532	2.270905	2.50649	0.040947	0.0302857	0.163285	0.130016
chr2	32221010	32221109	1711937	0	+	0.444444	(0.42,0.455]	chr2	167927	4	UTR3	UTR3:EXON_MRNA	SLC30A6	ENSG00000152683.14	ENST00000357055.7:ENST00000435660.5:ENST00000282587.9:ENST00000449777.5:ENST00000454324.5:ENST00000379343.6:ENST00000406369.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.03532	2.270905	2.50649	0.040947	0.0302857	0.163285	0.130016
chr5	140526927	140527000	6255101	0	+	0.438356	(0.42,0.455]	chr5	487624	1	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.03532	2.270905	2.50649	0.040947	0.0302857	0.163285	0.130016
chr3	156542314	156542412	4538655	0	-	0.336735	(0.33,0.36]	chr3	376076	29	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	1.70359	2.270815	2.83804	0.0245566	8.57053e-5	0.114841	0.00160731
chr17	76734211	76734308	16692099	0	-	0.309278	(0.29,0.33]	chr17	1375073	2	UTR3	UTR3:EXON_MRNA	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	24	2	1.90299	2.2705599999999997	2.63813	0.0126076	0.00803229	0.0719957	0.0528968
chr2	182925101	182925201	3059898	0	-	0.32	(0.29,0.33]	chr2	271262	161	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.90299	2.2705599999999997	2.63813	0.0126076	0.00803229	0.0719957	0.0528968
chr1	33013180	33013280	924455	0	-	0.5	(0.49,0.53]	chr1	97517	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000491241.1:ENST00000467905.5:ENST00000480134.5:ENST00000550338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	64	2	1.99995	2.270515	2.54108	0.00253611	5.09746e-4	0.0227257	0.00713668
chr2	113939958	113940030	2006940	0	+	0.375	(0.36,0.39]	chr2	190776	1	CDS	CDS:UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	51	2	2.037	2.270355	2.50371	0.00217565	8.6826e-4	0.0202707	0.0106624
chr15	41281787	41281887	14885249	0	+	0.33	(0.29,0.33]	chr15	1169243	25	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.99415	2.27029	2.54643	0.0333928	0.0026976	0.140128	0.0236059
chr19	38726956	38727029	17323729	0	+	0.630137	(0.59,1]	chr19	1434361	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	7	57	2	1.61912	2.270045	2.92097	0.0241476	0.0102634	0.110851	0.0628742
chr9	73170202	73170297	10304796	0	+	0.252632	[0,0.29]	chr9	776070	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000491192.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	34	2	1.97252	2.26986	2.5672	0.00462732	0.00216014	0.0353513	0.0208941
chr19	47741621	47741715	17363606	0	+	0.553191	(0.53,0.59]	chr19	1441384	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EHD2	ENSG00000024422.12	ENST00000263277.8:ENST00000538399.1:ENST00000540884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	43	2	1.4703	2.269845	3.06939	0.0386603	6.54756e-4	0.149227	0.00860229
chr10	46006121	46006215	11470925	0	-	0.361702	(0.36,0.39]	chr10	874825	12	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5	protein_coding	protein_coding	protein_coding	protein_coding	12	51	2	2.23985	2.2697950000000002	2.29974	0.00926291	4.97246e-4	0.0586162	0.00648961
chrM	3401	3497	19377173	0	+	0.552083	(0.53,0.59]	chrM	1649799	2	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	70	384	2	2.09725	2.2697	2.44215	4.85524e-5	5.97125e-6	0.00110532	1.79731e-4
chr9	61642382	61642438	10271526	0	+	0.428571	(0.42,0.455]	chr9	773179	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000238933.1	ENST00000459194.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	8	41	2	1.87159	2.2696	2.66761	0.0214479	5.19201e-4	0.102998	0.00671984
chr8	100924915	100924973	9976267	0	-	0.465517	(0.455,0.49]	chr8	752740	1	CDS_START	CDS_START:CDS:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	69	2	1.87064	2.2695950000000003	2.66855	0.0068996	6.92842e-5	0.0470992	0.00134043
chr17	82750575	82750655	16385351	0	+	0.625	(0.59,1]	chr17	1332863	3	CDS	CDS:EXON_MRNA	FN3K	ENSG00000167363.14	ENST00000300784.8	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.03921	2.269305	2.4994	0.0371471	0.0333573	0.151849	0.137922
chr8	144791330	144791430	10150945	0	-	0.6	(0.59,1]	chr8	764126	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL8	ENSG00000161016.18	ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	290	2	2.20644	2.269305	2.33217	2.95799e-4	2.51276e-4	0.00467922	0.00379143
chr6	67885770	67885869	7784118	0	-	0.474747	(0.455,0.49]	chr6	596226	15	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	47	204	2	1.9708	2.26915	2.5675	1.74686e-4	6.26958e-6	0.00283676	2.04809e-4
chr3	51993672	51993748	4181343	0	-	0.631579	(0.59,1]	chr3	352458	3	UTR3	UTR3:EXON_MRNA	RPL29	ENSG00000162244.12	ENST00000294189.11:ENST00000648640.1:ENST00000480306.5:ENST00000466397.5:ENST00000495383.5:ENST00000479017.5:ENST00000475248.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	205	2	1.90615	2.26912	2.63209	0.00145294	2.99383e-4	0.0148204	0.00472028
chr5	111192497	111192588	6760666	0	-	0.483516	(0.455,0.49]	chr5	519120	4	EXON_PSEUDO	EXON_PSEUDO	RPS3AP21	ENSG00000214784.4	ENST00000461022.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	22	2	1.96875	2.2690650000000003	2.56938	0.0480352	0.00635313	0.180552	0.0449666
chr8	20220999	20221098	9220107	0	+	0.464646	(0.455,0.49]	chr8	704735	7	UTR3	UTR3:EXON_MRNA:INTRON	ATP6V1B2	ENSG00000147416.11	ENST00000276390.7:ENST00000523482.5:ENST00000521442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	1.96875	2.2690650000000003	2.56938	0.0480352	0.00635313	0.180552	0.0449666
chrX	81298358	81298452	18750155	0	+	0.297872	(0.29,0.33]	chrX	1600060	13	UTR3	UTR3:EXON_MRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	2.17855	2.26893	2.35931	0.0183673	0.00615202	0.0928041	0.0438642
chr10	27134905	27134981	11423534	0	-	0.407895	(0.39,0.42]	chr10	870966	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000463270.1:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	21	2	1.64934	2.26885	2.88836	0.0412247	0.0102432	0.155868	0.062872
chr8	37862695	37862794	9794204	0	-	0.393939	(0.39,0.42]	chr8	740400	42	UTR3	UTR3:EXON_MRNA	RAB11FIP1	ENSG00000156675.16	ENST00000330843.9:ENST00000287263.8:ENST00000522727.5	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.64934	2.26885	2.88836	0.0412247	0.0102432	0.155868	0.062872
chr3	37017505	37017599	3410787	0	+	0.43617	(0.42,0.455]	chr3	296300	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	MLH1	ENSG00000076242.16	ENST00000536378.5:ENST00000673899.1:ENST00000674111.1:ENST00000673972.1:ENST00000673713.1:ENST00000231790.8:ENST00000673715.1:ENST00000432299.6:ENST00000673897.1:ENST00000442249.6:ENST00000673947.1:ENST00000456676.6:ENST00000673673.1:ENST00000674019.1:ENST00000458205.6:ENST00000413212.2:ENST00000447829.6:ENST00000673990.1:ENST00000455445.6:ENST00000435176.5:ENST00000539477.6:ENST00000441265.6:ENST00000674107.1:ENST00000458009.5:ENST00000673889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	1.99701	2.26872	2.54043	0.0235036	0.00705852	0.111072	0.047732
chr9	5093163	5093260	10167532	0	+	0.28866000000000003	[0,0.29]	chr9	765714	17	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	10	35	2	1.88543	2.268665	2.6519	0.0226603	3.05561e-4	0.10742	0.00442973
chr12	57234456	57234552	12902156	0	+	0.416667	(0.39,0.42]	chr12	1005218	2	UTR3	UTR3:EXON_MRNA	SHMT2	ENSG00000182199.11	ENST00000556825.5:ENST00000328923.8:ENST00000554467.5:ENST00000557487.5:ENST00000557433.5:ENST00000414700.7:ENST00000557348.5:ENST00000553474.5:ENST00000555774.5:ENST00000449049.7:ENST00000555116.5:ENST00000553837.5:ENST00000557529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	43	2	2.149	2.2686200000000003	2.38824	0.0149155	6.81913e-4	0.0812412	0.00834704
chr18	59329308	59329407	17142326	0	-	0.373737	(0.36,0.39]	chr18	1407602	16	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	20	75	2	1.96371	2.268245	2.57278	7.37313e-4	5.85449e-4	0.00882938	0.00793746
chr6	33405436	33405533	7121891	0	+	0.56701	(0.53,0.59]	chr6	547581	7	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	5	34	2	1.90953	2.268105	2.62668	0.0517711	0.00157636	0.193577	0.015761
chr17	76161534	76161590	16687800	0	-	0.482143	(0.455,0.49]	chr17	1374399	1	CDS	CDS:EXON_MRNA	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000319945.10:ENST00000593155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	2.23479	2.26809	2.30139	0.0530131	0.0209335	0.195536	0.101282
chr20	36651862	36651959	17957196	0	-	0.484536	(0.455,0.49]	chr20	1521497	2	UTR3	UTR3:EXON_MRNA	NDRG3	ENSG00000101079.21	ENST00000359675.6:ENST00000373803.6:ENST00000349004.6	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	2.23479	2.26809	2.30139	0.0530131	0.0209335	0.195536	0.101282
chr8	21969482	21969576	9221746	0	+	0.468085	(0.455,0.49]	chr8	704921	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000521303.5:ENST00000519769.5:ENST00000518017.1:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	17	2	2.23479	2.26809	2.30139	0.0530131	0.0209335	0.195536	0.101282
chr12	56666203	56666266	13352231	0	-	0.412698	(0.39,0.42]	chr12	1051791	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	71	2	2.05328	2.267785	2.48229	8.62602e-4	7.1143e-4	0.0105966	0.00856116
chr2	110638063	110638159	2837909	0	-	0.322917	(0.29,0.33]	chr2	253272	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	29	2	1.47719	2.267685	3.05818	0.042905	3.19046e-4	0.161091	0.00491578
chr12	10506939	10507033	12732052	0	+	0.457447	(0.455,0.49]	chr12	989914	11	CDS	CDS:EXON_MRNA	EIF2S3B	ENSG00000180574.3	ENST00000322446.3:ENST00000538173.1	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	2.26324	2.26738	2.27152	0.00868189	0.00786769	0.0558093	0.0514287
chr10	119177020	119177086	11718040	0	-	0.393939	(0.39,0.42]	chr10	893979	1	CDS	CDS:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.149	2.2672499999999998	2.3855	0.0149155	0.0049615	0.0812412	0.0368419
chr1	207336775	207336859	686419	0	+	0.428571	(0.42,0.455]	chr1	69502	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD55	ENSG00000196352.16	ENST00000367063.6:ENST00000645323.1:ENST00000391921.9:ENST00000367064.9:ENST00000314754.12:ENST00000367067.8:ENST00000644836.1:ENST00000343420.6:ENST00000476590.1:ENST00000465534.5:ENST00000488171.6:ENST00000618707.2:ENST00000635614.2:ENST00000634386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	1.96397	2.26724	2.57051	0.0265466	0.0138503	0.120071	0.0759947
chr5	33460982	33461064	5927448	0	+	0.536585	(0.53,0.59]	chr5	464423	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000509410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	38	2	2.16037	2.267195	2.37402	0.0254312	0.00230837	0.117089	0.0211205
chr6	10747819	10747881	7048628	0	+	0.709677	(0.59,1]	chr6	539769	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMEM14B:RP11-637O19.3	ENSG00000137210.14:ENSG00000272162.1	ENST00000463448.5:ENST00000473166.5:ENST00000612333.4:ENST00000460341.5:ENST00000491103.5:ENST00000480194.5:ENST00000480294.1:ENST00000473807.5:ENST00000379542.10:ENST00000475942.5:ENST00000461342.5:ENST00000492297.5:ENST00000463100.5:ENST00000379530.7:ENST00000473276.5:ENST00000467317.5:ENST00000481240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	2.21052	2.2671799999999998	2.32384	0.0157639	0.010462	0.0851539	0.063428
chr7	135928342	135928440	9085564	0	-	0.408163	(0.39,0.42]	chr7	693646	17	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	23	96	2	2.01362	2.2671799999999998	2.52074	8.4921e-4	5.45257e-5	0.0104629	0.00110715
chr12	56714361	56714439	13352497	0	-	0.487179	(0.455,0.49]	chr12	1051849	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NACA	ENSG00000196531.14	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000550343.1:ENST00000548084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	42	206	2	1.94503	2.26696	2.58889	6.35821e-4	1.85067e-6	0.00842569	6.72429e-5
chr2	26209834	26209889	2565834	0	-	0.418182	(0.39,0.42]	chr2	230581	2	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	2.2627100000000002	2.2664150000000003	2.27012	0.0192666	0.00945558	0.0966228	0.0594007
chr19	40447826	40447888	17566482	0	-	0.580645	(0.53,0.59]	chr19	1476384	2	UTR3	UTR3:EXON_MRNA	BLVRB	ENSG00000090013.11	ENST00000643519.1:ENST00000263368.9:ENST00000595483.5:ENST00000643596.1:ENST00000601346.5:ENST00000597870.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	186	2	1.73953	2.266095	2.79266	0.0146694	8.00188e-7	0.0800115	3.30771e-5
chr4	139351190	139351286	5128071	0	+	0.416667	(0.39,0.42]	chr4	415173	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000480277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	2.149	2.266065	2.38313	0.0149155	0.0128066	0.0812412	0.0725185
chr11	75562245	75562340	12023282	0	+	0.694737	(0.59,1]	chr11	926999	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	34	2	2.24397	2.2658750000000003	2.28778	0.0556537	0.0206682	0.191528	0.0997234
chr11	65444157	65444257	11984785	0	+	0.63	(0.59,1]	chr11	920390	202	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	NEAT1:MIR612	ENSG00000245532.9:ENSG00000283791.1	ENST00000501122.2:ENST00000384994.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	33	306	2	1.35783	2.2658	3.17377	0.0141492	2.58425e-6	0.077492	9.81596e-5
chr1	150266357	150266439	1288637	0	-	0.5	(0.49,0.53]	chr1	128181	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APH1A	ENSG00000117362.13	ENST00000414276.6:ENST00000369109.8:ENST00000360244.8:ENST00000461320.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	2.11783	2.2657350000000003	2.41364	0.0142725	0.0112538	0.0780078	0.0665375
chr2	149571084	149571171	2932902	0	-	0.436782	(0.42,0.455]	chr2	260031	1	CDS	CDS:EXON_MRNA	MMADHC	ENSG00000168288.13	ENST00000303319.10:ENST00000428879.5:ENST00000422782.2	protein_coding	protein_coding	protein_coding	protein_coding	15	70	2	2.26467	2.2655950000000002	2.26652	0.00146622	4.17265e-4	0.0157384	0.00566841
chr5	32601183	32601283	5925233	0	+	0.25	[0,0.29]	chr5	464197	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUB1	ENSG00000113387.12	ENST00000506237.5:ENST00000512913.5:ENST00000265073.9:ENST00000511615.5:ENST00000515355.5:ENST00000504789.5:ENST00000504016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	49	2	2.25082	2.26552	2.28022	0.00149417	6.11476e-4	0.0159607	0.0076324
chr12	862176	862270	12681174	0	+	0.531915	(0.53,0.59]	chr12	984056	2	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.2596	2.265365	2.27113	0.0185443	0.0178853	0.0948733	0.0918323
chr20	44906836	44906936	17799155	0	+	0.35	(0.33,0.36]	chr20	1504696	5	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	2.1972	2.2652099999999997	2.33322	0.00451613	0.00332656	0.0350603	0.0277823
chr1	51794540	51794610	1016337	0	-	0.557143	(0.53,0.59]	chr1	105207	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000497358.1:ENST00000475310.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	2.16037	2.2651399999999997	2.36991	0.0254312	0.00501452	0.117089	0.0370872
chrX	153694532	153694582	18915633	0	+	0.56	(0.53,0.59]	chrX	1611196	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1:ENST00000413787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	32	2	2.16037	2.2651399999999997	2.36991	0.0254312	0.00501452	0.117089	0.0370872
chr1	10411417	10411484	39822	0	+	0.567164	(0.53,0.59]	chr1	4804	1	CDS	CDS:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000491493.5:ENST00000270776.13:ENST00000483936.5:ENST00000460189.1	protein_coding	protein_coding	protein_coding	protein_coding	9	53	2	2.2203	2.26509	2.30988	0.00643853	0.0016462	0.0452349	0.0163443
chr15	44519231	44519295	14899535	0	+	0.34375	(0.33,0.36]	chr15	1171627	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558966.5:ENST00000558373.5:ENST00000560620.1:ENST00000559738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	20	2	2.05855	2.26509	2.47163	0.018622	0.0129725	0.0952021	0.0724783
chr8	94519279	94519377	9960296	0	-	0.357143	(0.33,0.36]	chr8	751305	4	CDS	CDS:EXON_MRNA	VIRMA	ENSG00000164944.12	ENST00000297591.10:ENST00000522263.5:ENST00000421249.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	20	2	2.05855	2.26509	2.47163	0.018622	0.0129725	0.0952021	0.0724783
chr12	123291307	123291407	13595031	0	-	0.39	(0.36,0.39]	chr12	1070977	23	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	1.89872	2.264935	2.63115	0.056542	0.0245975	0.19417	0.114841
chr14	101870347	101870446	14494312	0	+	0.373737	(0.36,0.39]	chr14	1132844	131	INTRON	INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000557268.5:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	1.89872	2.264935	2.63115	0.056542	0.0245975	0.19417	0.114841
chr6	131671247	131671327	7403014	0	+	0.3625	(0.36,0.39]	chr6	567383	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000470930.5:ENST00000494023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	1.89872	2.264935	2.63115	0.056542	0.0245975	0.19417	0.114841
chr6	167039978	167040047	7546063	0	+	0.376812	(0.36,0.39]	chr6	575901	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CEP43:RP11-517H2.6	ENSG00000213066.13:ENSG00000272980.4	ENST00000622353.4:ENST00000366847.9:ENST00000609590.1:ENST00000349556.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	3	14	2	1.89872	2.264935	2.63115	0.056542	0.0245975	0.19417	0.114841
chrX	45110163	45110249	18680410	0	+	0.383721	(0.36,0.39]	chrX	1592744	2	CDS	CDS:UTR3:EXON_MRNA	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1:ENST00000431196.3:ENST00000479423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	14	2	1.89872	2.264935	2.63115	0.056542	0.0245975	0.19417	0.114841
chrX	123696720	123696817	19199143	0	-	0.371134	(0.36,0.39]	chrX	1632634	1	CDS	CDS:UTR3:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	14	2	1.89872	2.264935	2.63115	0.056542	0.0245975	0.19417	0.114841
chr1	51821497	51821555	1016628	0	-	0.37931	(0.36,0.39]	chr1	105296	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000473805.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	1.85874	2.26492	2.6711	0.0415243	0.00434596	0.164804	0.0335517
chr1	179073028	179073126	575651	0	+	0.387755	(0.36,0.39]	chr1	59700	10	UTR3	UTR3:EXON_MRNA	FAM20B	ENSG00000116199.12	ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.85874	2.26492	2.6711	0.0415243	0.00434596	0.164804	0.0335517
chr4	24554724	24554797	5358981	0	-	0.39726	(0.39,0.42]	chr4	429864	1	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.03239	2.2647	2.49701	0.0339607	0.00663814	0.141431	0.046176300000000003
chr22	22548452	22548547	18445049	0	-	0.6	(0.59,1]	chr22	1572803	4	CDS	CDS:EXON_MRNA	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	354	2	1.94802	2.26469	2.58136	8.15458e-4	4.34281e-5	0.00957456	0.00100822
chr21	46270400	46270481	18281692	0	-	0.37037	(0.36,0.39]	chr21	1551041	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6:ENST00000479557.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	28	2	1.89391	2.26456	2.63521	0.0121625	0.00633242	0.0701019	0.0446708
chr2	9584437	9584531	2508158	0	-	0.308511	(0.29,0.33]	chr2	226349	6	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	12	42	2	2.22839	2.264235	2.30008	0.00486332	7.84294e-4	0.0374757	0.00927662
chr18	31547333	31547432	16809173	0	+	0.464646	(0.455,0.49]	chr18	1386482	7	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.09123	2.263935	2.43664	0.00905243	0.00394058	0.0574173	0.0315828
chr11	9606141	9606234	11793847	0	+	0.526882	(0.49,0.53]	chr11	903124	1	EXON_PSEUDO	EXON_PSEUDO	RPL23AP65	ENSG00000243964.1	ENST00000475608.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	28	2	1.80533	2.263925	2.72252	0.0163404	0.0161474	0.0867615	0.0860154
chr2	65097970	65098066	2708169	0	-	0.333333	(0.33,0.36]	chr2	241364	1	CDS	CDS:EXON_MRNA:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	31	2	1.27542	2.263625	3.25183	0.0551658	3.87102e-4	0.190574	0.00578322
chr8	100919004	100919103	9976206	0	-	0.414141	(0.39,0.42]	chr8	752728	26	UTR3	UTR3:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	100	2	2.04774	2.2635199999999998	2.4793	0.00105443	4.02119e-5	0.0123035	8.64933e-4
chr11	67610447	67610514	11997065	0	+	0.61194	(0.59,1]	chr11	923216	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NDUFV1	ENSG00000167792.13	ENST00000647561.1:ENST00000532303.5:ENST00000532244.5:ENST00000322776.11:ENST00000529927.5:ENST00000415352.6:ENST00000532343.5:ENST00000526770.5:ENST00000526169.1:ENST00000533919.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	39	2	1.67735	2.263395	2.84944	0.0534288	0.0128238	0.184995	0.0719798
chr7	128759791	128759852	8521751	0	+	0.311475	(0.29,0.33]	chr7	650183	1	CDS	CDS:EXON_MRNA	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	21	76	2	1.99379	2.262805	2.53182	0.00354776	2.75607e-5	0.0300049	6.31638e-4
chr5	146140759	146140859	6891325	0	-	0.39	(0.36,0.39]	chr5	527511	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000512412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	48	2	2.17039	2.2625849999999996	2.35478	0.00193274	0.0015037	0.0192272	0.0152588
chr2	132254885	132254983	2878621	0	-	0.489796	(0.455,0.49]	chr2	257829	17	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	23	122	2	1.58521	2.26257	2.93993	0.0106823	1.01551e-6	0.064368	4.04261e-5
chr17	38920972	38921071	16218434	0	+	0.484848	(0.455,0.49]	chr17	1310821	23	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.90955	2.262565	2.61558	0.0171034	0.00184897	0.0903636	0.0185736
chr19	48617790	48617884	17602819	0	-	0.574468	(0.53,0.59]	chr19	1482910	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL18	ENSG00000063177.13	ENST00000552347.5:ENST00000547897.5:ENST00000551749.5:ENST00000552588.5:ENST00000549920.6:ENST00000550645.5:ENST00000084795.9:ENST00000547892.1:ENST00000546623.5:ENST00000549370.5:ENST00000549273.5:ENST00000550973.5:ENST00000552705.5:ENST00000552851.1:ENST00000550671.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay	37	219	2	1.73357	2.262545	2.79152	0.00188971	1.1098e-6	0.0189101	4.38492e-5
chr12	108646404	108646504	13530487	0	-	0.51	(0.49,0.53]	chr12	1063929	14	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	9	48	2	2.02795	2.262525	2.4971	0.0110299	6.41492e-4	0.0652374	0.00796686
chr6	38686891	38686974	7689744	0	-	0.39759	(0.39,0.42]	chr6	589597	1	CDS	CDS:EXON_MRNA	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	12	51	2	2.04237	2.26233	2.48229	0.00286705	8.62602e-4	0.0246558	0.0105966
chr9	78329177	78329269	10321091	0	+	0.358696	(0.33,0.36]	chr9	777290	2	UTR3	UTR3:EXON_MRNA	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	1.68466	2.26232	2.83998	0.0351252	2.04094e-4	0.145575	0.0032041
chr3	13319762	13319834	4046221	0	-	0.611111	(0.59,1]	chr3	339524	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7	protein_coding	protein_coding	protein_coding	protein_coding	6	63	2	2.17889	2.26228	2.34567	0.025085	0.00313683	0.116848	0.0264943
chr2	131149156	131149256	2065750	0	+	0.41	(0.39,0.42]	chr2	194095	25	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHB2	ENSG00000115762.16	ENST00000403716.5:ENST00000439822.6:ENST00000234115.10:ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.18025	2.26187	2.34349	0.0169272	0.00587938	0.0890655	0.0424857
chr11	34086063	34086141	11905340	0	+	0.551282	(0.53,0.59]	chr11	909541	1	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	91	2	2.13136	2.26184	2.39232	9.25918e-4	4.08341e-4	0.0104855	0.00600264
chr8	22138925	22138993	9750686	0	-	0.661765	(0.59,1]	chr8	737170	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9:ENST00000523293.2:ENST00000518664.5:ENST00000519074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	42	2	2.19905	2.2618	2.32455	0.0520547	0.0105866	0.193787	0.0644466
chr1	17413626	17413717	874072	0	-	0.626374	(0.59,1]	chr1	89624	2	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	5	52	2	2.0452	2.2617849999999997	2.47837	0.0179494	0.00970721	0.0939469	0.0608296
chr6	7251008	7251105	7031386	0	+	0.360825	(0.36,0.39]	chr6	538755	22	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7:ENST00000349384.10	protein_coding	protein_coding	protein_coding	protein_coding	11	43	2	1.99042	2.261765	2.53311	0.00345778	0.00277583	0.0293796	0.0241009
chr2	99194750	99194824	1952284	0	+	0.445946	(0.42,0.455]	chr2	185448	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-111H13.1:RP11-38C17.1:MRPL30	ENSG00000241962.9:ENSG00000273155.1:ENSG00000185414.20	ENST00000424491.5:ENST00000410042.1:ENST00000473743.5:ENST00000338148.8:ENST00000409145.5:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	43	2	1.96087	2.26175	2.56263	0.00983972	9.19381e-4	0.0615953	0.0104432
chr1	179919593	179919690	580819	0	+	0.28866000000000003	[0,0.29]	chr1	60267	15	UTR3	UTR3:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000435319.8	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.11932	2.261635	2.40395	0.0332641	0.0210081	0.137922	0.101116
chr5	65824407	65824507	6004068	0	+	0.45	(0.42,0.455]	chr5	470356	16	UTR3	UTR3:EXON_MRNA:INTRON	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000509935.2	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.19674	2.261515	2.32629	0.0254904	0.0153564	0.117089	0.0832114
chr17	75167748	75167846	16682492	0	-	0.326531	(0.29,0.33]	chr17	1372978	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	JPT1:SUMO2	ENSG00000189159.16:ENSG00000188612.12	ENST00000580380.1:ENST00000584079.5:ENST00000420826.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	40	2	1.29077	2.26133	3.23189	0.0481416	5.87177e-5	0.180948	0.00117909
chr13	32775546	32775645	13680572	0	+	0.434343	(0.42,0.455]	chr13	1078209	6	UTR3	UTR3:EXON_MRNA	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	2.19674	2.26132	2.3259	0.0484606	0.0254904	0.175495	0.117089
chrX	110195367	110195465	19169114	0	-	0.428571	(0.42,0.455]	chrX	1630483	13	UTR3	UTR3:EXON_MRNA	AMMECR1	ENSG00000101935.11	ENST00000262844.10	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.19674	2.26132	2.3259	0.0484606	0.0254904	0.175495	0.117089
chr2	110639794	110639848	2837927	0	-	0.425926	(0.42,0.455]	chr2	253278	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	1.95205	2.26128	2.57051	0.0265466	0.0248244	0.120071	0.113644
chr1	161518345	161518444	500533	0	+	0.353535	(0.33,0.36]	chr1	54251	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000367972.8:ENST00000271450.12:ENST00000483665.6:ENST00000467525.5:ENST00000471026.5:ENST00000537821.2:ENST00000461298.1:ENST00000459885.1:ENST00000486608.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	7	28	2	1.82006	2.260955	2.70185	0.0323353	0.00121183	0.135977	0.0129756
chr11	119095139	119095216	12626601	0	-	0.662338	(0.59,1]	chr11	979847	2	CDS	CDS:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	52	2	1.99004	2.260755	2.53147	0.0214639	0.00807544	0.102904	0.0531324
chrX	154359068	154359154	19278081	0	-	0.593023	(0.59,1]	chrX	1638306	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	1.99004	2.260755	2.53147	0.0214639	0.00807544	0.102904	0.0531324
chr7	97852413	97852468	8940608	0	-	0.418182	(0.39,0.42]	chr7	682229	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ASNS:RP5-1090P18.1	ENSG00000070669.17:ENSG00000284707.2	ENST00000394308.8:ENST00000641784.1:ENST00000641390.1:ENST00000175506.8:ENST00000394309.7:ENST00000437628.5:ENST00000454046.5:ENST00000641315.1:ENST00000422745.5:ENST00000455086.5:ENST00000444334.5:ENST00000487714.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	6	25	2	1.81545	2.26068	2.70591	0.0185716	0.0160991	0.0932453	0.0866586
chr9	92256739	92256800	10737203	0	-	0.393443	(0.39,0.42]	chr9	812290	2	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	25	2	1.81545	2.26068	2.70591	0.0185716	0.0160991	0.0932453	0.0866586
chr7	107160744	107160841	8455226	0	+	0.350515	(0.33,0.36]	chr7	645853	13	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	24	87	2	2.16096	2.26058	2.3602	5.14602e-4	1.72596e-4	0.0071931	0.00280529
chr7	44801521	44801621	8261669	0	+	0.42	(0.39,0.42]	chr7	629477	2	UTR3	UTR3:EXON_MRNA:INTRON	PPIA	ENSG00000196262.15	ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1:ENST00000494484.1:ENST00000480603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	63	2	1.86207	2.26053	2.65899	0.00513376	8.66237e-5	0.0379321	0.00177086
chr3	10301260	10301360	4032288	0	-	0.57	(0.53,0.59]	chr3	338574	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	SEC13	ENSG00000157020.18	ENST00000492602.5:ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	49	2	1.94437	2.260485	2.5766	0.0143432	8.34608e-4	0.0783202	0.00978328
chr3	170129069	170129165	4573908	0	-	0.510417	(0.49,0.53]	chr3	378573	5	CDS	CDS:EXON_MRNA	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.99044	2.260275	2.53011	0.0435903	0.00254862	0.170594	0.0227869
chr6	4891991	4892084	7021395	0	+	0.526882	(0.49,0.53]	chr6	538409	4	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000491864.1:ENST00000440139.5:ENST00000483019.1:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	1.99044	2.260275	2.53011	0.0435903	0.00254862	0.170594	0.0227869
chr2	32499639	32499733	1713864	0	+	0.382979	(0.36,0.39]	chr2	168223	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	2.1437	2.26022	2.37674	0.0340515	0.00529284	0.141465	0.0390084
chr5	135029055	135029143	6846893	0	-	0.556818	(0.53,0.59]	chr5	523930	3	CDS	CDS:EXON_MRNA	PITX1	ENSG00000069011.16	ENST00000265340.12:ENST00000506438.5	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	1.39693	2.260165	3.1234	0.0401297	0.00390623	0.153343	0.0322851
chr10	46005839	46005933	11470922	0	-	0.361702	(0.36,0.39]	chr10	874825	9	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	23	104	2	1.8621	2.260115	2.65813	0.00517191	5.79758e-6	0.0395545	1.7529e-4
chr10	68984283	68984381	11093420	0	+	0.408163	(0.39,0.42]	chr10	843302	16	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	25	107	2	1.836	2.25988	2.68376	0.00205908	1.14984e-5	0.0201928	3.09736e-4
chr3	152299601	152299699	3816854	0	+	0.295918	(0.29,0.33]	chr3	325627	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	53	2	1.63619	2.259835	2.88348	0.00953377	6.59632e-5	0.0598722	0.00128696
chr3	195788320	195788419	4661150	0	-	0.575758	(0.53,0.59]	chr3	385270	97	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	39	2	2.0404	2.25963	2.47886	0.0362529	0.00138105	0.148525	0.014307
chr19	18904770	18904852	17501195	0	-	0.646341	(0.59,1]	chr19	1468472	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	COPE	ENSG00000105669.14	ENST00000262812.9:ENST00000349893.8:ENST00000600932.5:ENST00000598969.5:ENST00000351079.8:ENST00000593827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	52	2	2.01575	2.2594849999999997	2.50322	0.0201728	0.00863444	0.0978331	0.0556009
chr20	50893056	50893153	18006313	0	-	0.402062	(0.39,0.42]	chr20	1526243	17	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.56001	2.258935	2.95786	0.0393342	0.00138212	0.151063	0.0149186
chr1	35601893	35601991	938322	0	-	0.285714	[0,0.29]	chr1	98692	25	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	11	33	2	1.83778	2.25884	2.6799	0.00861873	0.00121378	0.0555459	0.0135383
chr1	23082292	23082366	97779	0	+	0.513514	(0.49,0.53]	chr1	11304	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9:ENST00000494920.1:ENST00000602503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	31	2	1.56467	2.2587900000000003	2.95291	0.051923	0.00119735	0.18423900000000001	0.0134293
chr5	43290239	43290338	6560160	0	-	0.333333	(0.33,0.36]	chr5	508332	29	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.80608	2.258525	2.71097	0.0416784	6.6741e-4	0.157445	0.00867533
chr19	57292034	57292130	17405780	0	+	0.5	(0.49,0.53]	chr19	1450090	15	CDS	CDS:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	5	28	2	2.13501	2.2585249999999997	2.38204	0.0287874	0.0049129	0.128869	0.0366648
chr10	69401035	69401135	11096850	0	+	0.63	(0.59,1]	chr10	843822	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000470050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	53	2	1.74555	2.25832	2.77109	0.0444308	0.00331425	0.165174	0.0285314
chr17	35822639	35822736	16208511	0	+	0.463918	(0.455,0.49]	chr17	1309229	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TAF15:AC015849.13	ENSG00000270647.6:ENSG00000270894.1	ENST00000603067.5:ENST00000604879.5:ENST00000605844.6:ENST00000603777.5:ENST00000603393.5:ENST00000605649.5:ENST00000604360.5:ENST00000603427.5:ENST00000604841.5:ENST00000605197.2:ENST00000603678.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	6	30	2	2.15985	2.258145	2.35644	0.0128965	0.00555877	0.0722356	0.0405952
chr12	57060858	57060945	13353784	0	-	0.494253	(0.49,0.53]	chr12	1052219	2	CDS	CDS:UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7:ENST00000554340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	2.12684	2.258095	2.38935	0.0134683	0.00488689	0.0744999	0.0376157
chr19	39839034	39839114	17563536	0	-	0.625	(0.59,1]	chr19	1475748	1	CDS	CDS:UTR3:EXON_MRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	103	2	1.97731	2.258095	2.53888	0.00878719	7.85335e-4	0.0562439	0.00978906
chr5	149494668	149494767	6910238	0	-	0.383838	(0.36,0.39]	chr5	528470	18	UTR3	UTR3:EXON_MRNA	CSNK1A1:CTB-89H12.4	ENSG00000113712.19:ENSG00000230551.4	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000499521.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	20	75	2	2.04667	2.25805	2.46943	9.44692e-4	1.6661e-4	0.0113546	0.00271635
chr10	73776041	73776130	11115936	0	+	0.325843	(0.29,0.33]	chr10	845948	5	UTR3	UTR3:EXON_MRNA:INTRON	FUT11	ENSG00000196968.11	ENST00000372841.8:ENST00000394790.2:ENST00000489264.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	30	2	1.90299	2.257935	2.61288	0.0126076	0.00138819	0.0719957	0.0149724
chr16	28482105	28482191	15905531	0	-	0.639535	(0.59,1]	chr16	1273613	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	RP11-435I10.4:CLN3	ENSG00000261832.6:ENSG00000188603.22	ENST00000635887.1:ENST00000637376.1:ENST00000636078.1:ENST00000636503.1:ENST00000637378.1:ENST00000568224.4:ENST00000636017.1:ENST00000636866.1:ENST00000637299.1:ENST00000638036.1:ENST00000636766.1:ENST00000637745.1:ENST00000637100.1:ENST00000569430.7:ENST00000359984.12:ENST00000360019.8:ENST00000636147.2:ENST00000564091.6:ENST00000563874.5:ENST00000357857.14:ENST00000333496.14:ENST00000561689.6:ENST00000395653.9:ENST00000357806.11:ENST00000568076.6:ENST00000636907.1:ENST00000637184.1:ENST00000636839.1:ENST00000637107.1:ENST00000636351.1:ENST00000636977.1:ENST00000637578.1:ENST00000565354.5:ENST00000635958.1:ENST00000567963.6:ENST00000568452.6:ENST00000637871.1:ENST00000565316.6:ENST00000628023.3:ENST00000636228.1:ENST00000635861.1:ENST00000636172.1:ENST00000355477.10:ENST00000565140.5:ENST00000566057.5:ENST00000569030.5:ENST00000637699.1:ENST00000568422.6:ENST00000637050.1:ENST00000636853.1:ENST00000566824.6:ENST00000636685.1:ENST00000635973.1:ENST00000568497.6:ENST00000564574.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	33	2	2.19052	2.257535	2.32455	0.0520547	0.0237927	0.193787	0.109413
chr1	145992811	145992906	1270239	0	-	0.484211	(0.455,0.49]	chr1	125527	5	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	62	283	2	2.05534	2.25725	2.45916	9.48347e-5	2.94243e-6	0.00188777	9.91257e-5
chr2	177538887	177538986	2230157	0	+	0.30303	(0.29,0.33]	chr2	203559	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	34	2	2.22839	2.2572200000000002	2.28605	0.00486332	0.00224889	0.0374757	0.0207945
chr1	235342401	235342491	765781	0	+	0.322222	(0.29,0.33]	chr1	77256	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGPS1:TBCE	ENSG00000152904.11:ENSG00000285053.1	ENST00000488594.5:ENST00000471812.5:ENST00000358966.6:ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000282841.9:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000391855.2:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000497327.1:ENST00000645578.1:ENST00000642431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	2.06067	2.2572	2.45373	0.0384863	0.0156405	0.149227	0.084273700000000007
chr15	68189609	68189707	14995016	0	+	0.295918	(0.29,0.33]	chr15	1178737	19	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	2.06067	2.2572	2.45373	0.0384863	0.0156405	0.149227	0.084273700000000007
chr18	12986293	12986387	16764009	0	+	0.308511	(0.29,0.33]	chr18	1382771	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEH1L	ENSG00000085415.16	ENST00000262124.15:ENST00000399892.7:ENST00000590843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	15	2	2.06067	2.2572	2.45373	0.0384863	0.0156405	0.149227	0.084273700000000007
chr5	83052845	83052943	6673205	0	-	0.306122	(0.29,0.33]	chr5	515109	1	UTR3	UTR3:EXON_MRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	2.06067	2.2572	2.45373	0.0384863	0.0156405	0.149227	0.084273700000000007
chr8	21980083	21980143	9221858	0	+	0.433333	(0.42,0.455]	chr8	704955	1	CDS	CDS:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	2.15137	2.25692	2.36247	0.0462889	0.0123864	0.176878	0.07101
chr1	634624	634723	513	0	+	0.474747	(0.455,0.49]	chr1	108	12	EXON_PSEUDO	EXON_PSEUDO	MTCO3P12	ENSG00000198744.5	ENST00000416718.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	13	62	2	1.56242	2.2569150000000002	2.95141	0.0198935	3.80375e-5	0.0966287	8.24619e-4
chr6	34284264	34284364	7672444	0	-	0.38	(0.36,0.39]	chr6	588026	47	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	19	76	2	2.09923	2.2568099999999998	2.41439	0.00147974	1.15482e-4	0.0158291	0.00204405
chr5	163518957	163519056	6343961	0	+	0.292929	(0.29,0.33]	chr5	494143	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAT2B	ENSG00000038274.17	ENST00000280969.9:ENST00000518095.5:ENST00000321757.11:ENST00000523606.1:ENST00000521838.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	21	2	1.89143	2.25677	2.62211	0.0332921	0.00310562	0.137922	0.0274272
chr9	120817124	120817222	10833860	0	-	0.285714	[0,0.29]	chr9	820467	12	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	9	30	2	2.16409	2.2567199999999996	2.34935	0.0125675	0.0016884	0.0716375	0.0165476
chr1	27418268	27418345	908893	0	-	0.467532	(0.455,0.49]	chr1	95044	1	CDS	CDS:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	2.0008	2.256705	2.51261	0.0129467	0.00280343	0.0724783	0.0242354
chr21	33528849	33528937	18220590	0	-	0.375	(0.36,0.39]	chr21	1546390	1	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	61	2	1.92213	2.25668	2.59123	0.00300598	1.56992e-4	0.0256973	0.00283688
chr8	68359531	68359631	9384046	0	+	0.44	(0.42,0.455]	chr8	717264	278	INTRON	INTRON	C8orf34	ENSG00000165084.16	ENST00000518698.6:ENST00000349492.3:ENST00000523686.5:ENST00000348340.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	114	2	1.88227	2.256485	2.6307	0.00505533	7.70295e-6	0.038775	2.21169e-4
chr22	20918104	20918174	18299861	0	+	0.528571	(0.49,0.53]	chr22	1553633	2	CDS	CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	90	2	1.81634	2.25647	2.6966	0.00637766	2.24314e-5	0.0448616	5.3441e-4
chr15	57286655	57286755	14950141	0	+	0.41	(0.39,0.42]	chr15	1174949	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560191.1:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	30	2	1.89145	2.25638	2.62131	0.0119663	0.00609677	0.0700178	0.0439136
chr19	38714468	38714561	17323593	0	+	0.580645	(0.53,0.59]	chr19	1434317	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000489451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	36	2	2.13829	2.2561400000000003	2.37399	0.0126178	0.00663709	0.0717599	0.046176300000000003
chr16	70258032	70258102	15996933	0	-	0.6	(0.59,1]	chr16	1284615	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	104	2	2.09006	2.256025	2.42199	0.00475078	0.00213601	0.0367332	0.0199443
chr11	119092934	119093021	12162025	0	+	0.551724	(0.53,0.59]	chr11	937743	1	CDS	CDS:UTR3:EXON_MRNA	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000542044.5:ENST00000544387.5:ENST00000543090.5:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648374.1:ENST00000544182.1:ENST00000539045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	75	2	2.23281	2.2559649999999998	2.27912	0.00154317	7.86143e-4	0.0164318	0.00929193
chr2	38295895	38295993	2602686	0	-	0.346939	(0.33,0.36]	chr2	234394	21	UTR3	UTR3:EXON_MRNA	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.96645	2.255915	2.54538	0.0197415	0.00259294	0.095966	0.0229695
chr8	97865398	97865485	9507235	0	+	0.425287	(0.42,0.455]	chr8	722770	5	EXON_PSEUDO	EXON_PSEUDO	RPS23P1	ENSG00000243504.1	ENST00000491662.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	38	2	2.03532	2.2556599999999998	2.476	0.040947	7.24984e-4	0.163285	0.00869086
chr1	36305079	36305171	141736	0	+	0.478261	(0.455,0.49]	chr1	17609	7	UTR3	UTR3:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	2.09123	2.2555699999999996	2.41991	0.00905243	0.00192426	0.0574173	0.0183914
chr9	83970151	83970251	10712880	0	-	0.43	(0.42,0.455]	chr9	810485	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:PRIMIRNA:INTRON	HNRNPK:MIR7-1	ENSG00000165119.21:ENSG00000284179.1	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1:ENST00000384871.1:ENST00000492865.1:ENST00000481820.6	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	31	150	2	1.88725	2.25552	2.62379	0.00142244	4.34114e-6	0.0153047	1.37987e-4
chr3	47587522	47587620	4161756	0	-	0.469388	(0.455,0.49]	chr3	348302	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	34	2	2.15064	2.25518	2.35972	0.00661084	0.0058634	0.046082	0.0427941
chr16	85676005	85676104	15798113	0	+	0.464646	(0.455,0.49]	chr16	1257094	36	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	1.81931	2.25492	2.69053	0.0235519	0.0182983	0.108737	0.0925808
chr11	57740145	57740245	11952436	0	+	0.47	(0.455,0.49]	chr11	914745	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	TMX2-CTNND1:TMX2	ENSG00000288534.1:ENSG00000213593.10	ENST00000673781.1:ENST00000673810.1:ENST00000278422.9:ENST00000674116.1:ENST00000378312.8:ENST00000530114.5:ENST00000529403.1:ENST00000528110.5:ENST00000674060.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.98188	2.25461	2.52734	0.0226804	0.00792433	0.105116	0.0523592
chr11	62522022	62522121	12408652	0	-	0.464646	(0.455,0.49]	chr11	960901	53	CDS	CDS:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.98188	2.25461	2.52734	0.0226804	0.00792433	0.105116	0.0523592
chr19	48391358	48391454	17601760	0	-	0.760417	(0.59,1]	chr19	1482740	1	UTR5	UTR5:EXON_MRNA	KDELR1	ENSG00000105438.9	ENST00000330720.7:ENST00000600980.1:ENST00000599084.1:ENST00000594643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	209	2	1.8593	2.25458	2.64986	0.00171182	2.72389e-4	0.0167669	0.00439014
chr2	74528750	74528842	2743305	0	-	0.630435	(0.59,1]	chr2	244614	1	CDS	CDS:EXON_MRNA	AUP1	ENSG00000115307.17	ENST00000425118.5:ENST00000377526.4:ENST00000463900.5:ENST00000466894.5:ENST00000464887.1:ENST00000472800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	71	2	2.12699	2.2545450000000002	2.3821	0.00764565	0.00554753	0.0503696	0.0417049
chr3	88052825	88052923	4311686	0	-	0.336735	(0.33,0.36]	chr3	359651	10	UTR3	UTR3:EXON_MRNA	CGGBP1	ENSG00000163320.12	ENST00000309534.10:ENST00000482016.6:ENST00000398392.2	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	2.05855	2.254205	2.44986	0.018622	0.00563343	0.0952021	0.0422191
chr1	46286305	46286402	981898	0	-	0.597938	(0.59,1]	chr1	103530	3	CDS	CDS:EXON_MRNA	LRRC41	ENSG00000132128.17	ENST00000617190.5:ENST00000343304.10:ENST00000615587.4:ENST00000472710.2:ENST00000498402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	33	2	2.11074	2.254105	2.39747	0.0430221	0.0305	0.161091	0.130204
chr16	28832257	28832328	15620343	0	+	0.619718	(0.59,1]	chr16	1238442	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000570284.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	11	103	2	2.04741	2.254105	2.4608	0.00407427	0.00261257	0.0324137	0.0230705
chr19	55669443	55669526	17397305	0	+	0.626506	(0.59,1]	chr19	1448934	1	CDS	CDS:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9:ENST00000590551.1	protein_coding	protein_coding	protein_coding	protein_coding	3	33	2	2.11074	2.254105	2.39747	0.0430221	0.0305	0.161091	0.130204
chr13	25313682	25313751	13647677	0	+	0.478261	(0.455,0.49]	chr13	1075858	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000495460.1:ENST00000381747.7:ENST00000394327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	27	2	1.37968	2.254055	3.12843	0.0536837	0.00392855	0.185819	0.0322851
chr19	58387307	58387399	17412691	0	+	0.630435	(0.59,1]	chr19	1451024	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000599909.1:ENST00000598807.1:ENST00000596046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	186	2	1.75571	2.25403	2.75235	0.00607999	5.95119e-5	0.0438976	0.00119298
chr17	40417791	40417843	16539075	0	-	0.576923	(0.53,0.59]	chr17	1354714	1	UTR5	UTR5:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6	protein_coding	protein_coding	protein_coding	protein_coding	6	37	2	2.05734	2.25393	2.45052	0.0167029	0.00355092	0.0883198	0.0300049
chr4	105485092	105485190	5026462	0	+	0.459184	(0.455,0.49]	chr4	409127	5	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	9	45	2	2.0008	2.253915	2.50703	0.0129467	6.13589e-4	0.0724783	0.00765301
chr11	4129073	4129150	11774379	0	+	0.402597	(0.39,0.42]	chr11	901030	1	CDS	CDS:UTR3:EXON_MRNA	RRM1	ENSG00000167325.15	ENST00000300738.10:ENST00000532170.5:ENST00000533349.5:ENST00000534285.5:ENST00000533495.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	2.01081	2.2539100000000003	2.49701	0.0339607	0.0207537	0.141431	0.100574
chr12	111457213	111457286	13539888	0	-	0.575342	(0.53,0.59]	chr12	1065252	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000647445.1:ENST00000482777.5:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000550844.2:ENST00000468920.2:ENST00000643474.1:ENST00000643694.1:ENST00000551551.1:ENST00000550889.5:ENST00000645162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	37	2	2.0693	2.2539100000000003	2.43852	0.0160468	0.00373745	0.0860154	0.0303359
chr12	12721303	12721400	12739871	0	+	0.515464	(0.49,0.53]	chr12	990327	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDKN1B	ENSG00000111276.12	ENST00000684771.1:ENST00000682620.1:ENST00000228872.9:ENST00000614874.2:ENST00000396340.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	2.12684	2.253905	2.38097	0.0425419	0.0134683	0.167547	0.0744999
chr9	137242975	137243071	10515404	0	+	0.65625	(0.59,1]	chr9	797249	6	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	183	2	2.0256	2.2538549999999997	2.48211	0.0028918	1.88364e-4	0.0248106	0.0032588
chr12	56714668	56714703	13352501	0	-	0.4	(0.39,0.42]	chr12	1051852	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NACA:RP11-112B10.2	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000550343.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	93	2	1.90192	2.25375	2.60558	6.55765e-4	4.23634e-4	0.00809341	0.00613675
chr8	100703024	100703107	9975931	0	-	0.289157	[0,0.29]	chr8	752645	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PABPC1:MIR7705	ENSG00000070756.17:ENSG00000284570.1	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000614758.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	96	274	2	2.19083	2.253595	2.31636	1.19468e-5	6.08805e-6	3.1819e-4	2.00004e-4
chr1	36301552	36301624	141698	0	+	0.513889	(0.49,0.53]	chr1	17599	1	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	4	23	2	1.99044	2.2535749999999997	2.51671	0.0435903	0.00768763	0.170594	0.050396
chr16	81710486	81710584	15772094	0	+	0.244898	[0,0.29]	chr16	1255597	8	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	1.94841	2.25347	2.55853	0.0427374	0.007538	0.168094	0.0497903
chr18	9400025	9400125	16753332	0	+	0.23	[0,0.29]	chr18	1381535	6	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	17	2	1.94841	2.25347	2.55853	0.0427374	0.007538	0.168094	0.0497903
chr5	72911497	72911596	6029418	0	+	0.272727	[0,0.29]	chr5	472817	29	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	17	2	1.94841	2.25347	2.55853	0.0427374	0.007538	0.168094	0.0497903
chr9	33046502	33046601	10631172	0	-	0.212121	[0,0.29]	chr9	803364	49	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	1.94841	2.25347	2.55853	0.0427374	0.007538	0.168094	0.0497903
chr3	194419878	194419967	4654641	0	-	0.269663	[0,0.29]	chr3	384364	1	CDS	CDS:EXON_MRNA:INTRON	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000497567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	23	2	1.54058	2.252955	2.96533	0.0356882	0.0024246	0.143842	0.0227938
chr5	72910411	72910510	6029407	0	+	0.373737	(0.36,0.39]	chr5	472817	18	UTR3	UTR3:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000681711.1:ENST00000679378.1:ENST00000680111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	25	2	2.01657	2.252895	2.48922	0.0118295	0.0110399	0.0692539	0.0652374
chr1	45604935	45605016	175036	0	+	0.432099	(0.42,0.455]	chr1	22718	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	59	2	2.0286	2.252875	2.47715	0.00302631	4.42432e-4	0.0257942	0.00630885
chr1	24672385	24672485	102175	0	+	0.36	(0.33,0.36]	chr1	12034	2	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000447431.6	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.65713	2.25277	2.84841	0.0528205	0.0020676	0.195536	0.0194849
chr9	130886280	130886380	10494294	0	+	0.55	(0.53,0.59]	chr9	792936	7	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.48483	2.252685	3.02054	0.0472509	0.00577011	0.172726	0.0426551
chr12	56645261	56645353	13352188	0	-	0.652174	(0.59,1]	chr12	1051771	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	131	2	1.80537	2.252665	2.69996	0.00991402	1.85031e-4	0.0620511	0.00296795
chr2	74891134	74891231	1893430	0	+	0.371134	(0.36,0.39]	chr2	179646	3	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	9	31	2	1.83418	2.25264	2.6711	0.00997757	0.00434596	0.0622177	0.0335517
chr1	112619844	112619883	410958	0	+	0.538462	(0.53,0.59]	chr1	40485	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CAPZA1	ENSG00000116489.13	ENST00000485542.5:ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	20	2	2.16037	2.25249	2.34461	0.0457008	0.0254312	0.168044	0.117089
chr20	3930287	3930387	17883227	0	-	0.54	(0.53,0.59]	chr20	1513717	31	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.16037	2.25249	2.34461	0.0457008	0.0254312	0.168044	0.117089
chr5	137753966	137754066	6858100	0	-	0.56	(0.53,0.59]	chr5	524502	1	CDS_START	CDS_START:CDS:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.16037	2.25249	2.34461	0.0457008	0.0254312	0.168044	0.117089
chr6	159784756	159784847	8049120	0	-	0.406593	(0.39,0.42]	chr6	615277	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1:ENST00000536807.1:ENST00000543532.5:ENST00000538530.5:ENST00000467544.2:ENST00000538128.5:ENST00000543517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	55	2	2.13705	2.25244	2.36783	0.00175575	9.23937e-4	0.0171455	0.0111585
chr6	35469380	35469454	7130851	0	+	0.594595	(0.59,1]	chr6	549013	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL10A	ENSG00000198755.11	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000490335.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	260	2	1.84792	2.252365	2.65681	0.00313333	3.04e-5	0.0276345	6.82367e-4
chr10	27117651	27117727	11423350	0	-	0.381579	(0.36,0.39]	chr10	870908	2	CDS	CDS:EXON_MRNA	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7	protein_coding	protein_coding	protein_coding	protein_coding	7	30	2	1.81435	2.25235	2.69035	0.0302191	0.00123789	0.129773	0.013161
chrX	155239141	155239241	18920371	0	+	0.39	(0.36,0.39]	chrX	1612534	4	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	7	30	2	1.81435	2.25235	2.69035	0.0302191	0.00123789	0.129773	0.013161
chr2	55288833	55288932	2668507	0	-	0.373737	(0.36,0.39]	chr2	238748	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CCDC88A	ENSG00000115355.17	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000644512.1:ENST00000643375.1:ENST00000647547.1:ENST00000647401.1:ENST00000412148.6:ENST00000444458.5:ENST00000646285.1:ENST00000647396.1:ENST00000644809.1:ENST00000642563.1:ENST00000643265.1:ENST00000645969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	24	2	1.61529	2.2522349999999998	2.88918	0.0466766	0.00212816	0.171348	0.0206577
chr7	151072038	151072136	8617492	0	+	0.520408	(0.49,0.53]	chr7	658367	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC4A2	ENSG00000164889.15	ENST00000485713.5:ENST00000413384.7:ENST00000677246.1:ENST00000392826.6:ENST00000461735.1:ENST00000493040.5:ENST00000460010.1:ENST00000482697.1:ENST00000472204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	48	2	1.44884	2.25198	3.05512	0.0353033	1.59562e-4	0.146227	0.00263091
chr20	34290331	34290390	17946762	0	-	0.542373	(0.53,0.59]	chr20	1519967	1	CDS	CDS:EXON_MRNA	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	20	2	2.14885	2.2519799999999996	2.35511	0.0445399	0.0262993	0.172163	0.117164
chr6	89688572	89688650	7838365	0	-	0.538462	(0.53,0.59]	chr6	600572	1	CDS	CDS:EXON_MRNA	MDN1	ENSG00000112159.12	ENST00000369393.8:ENST00000629399.2	protein_coding	protein_coding	protein_coding	protein_coding	3	20	2	2.14885	2.2519799999999996	2.35511	0.0445399	0.0262993	0.172163	0.117164
chr1	32042624	32042720	125857	0	+	0.385417	(0.36,0.39]	chr1	15466	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	44	2	2.03744	2.251965	2.46649	0.00563874	7.95961e-4	0.0422191	0.00935982
chr17	61965375	61965468	16628436	0	-	0.473118	(0.455,0.49]	chr17	1366865	5	CDS	CDS:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	1.76168	2.2518949999999998	2.74211	0.0140234	0.00330545	0.076809	0.028478
chr19	11553449	11553547	17464364	0	-	0.653061	(0.59,1]	chr19	1462061	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5	protein_coding	protein_coding	protein_coding	protein_coding	6	62	2	2.21052	2.251855	2.29319	0.010462	0.00750123	0.063428	0.0495953
chr15	43116196	43116295	15244704	0	-	0.363636	(0.36,0.39]	chr15	1201032	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-473C18.6:RPS3AP47	ENSG00000285080.1:ENSG00000205871.5	ENST00000570199.2:ENST00000487100.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	21	84	2	2.15289	2.2518450000000003	2.3508	0.00108696	1.01347e-4	0.0125476	0.00182418
chrX	24071557	24071642	18616625	0	+	0.517647	(0.49,0.53]	chrX	1589830	1	CDS	CDS:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	12	61	2	2.16476	2.251805	2.33885	0.00364507	5.58754e-4	0.0306714	0.00709747
chr16	23596190	23596290	15895493	0	-	0.71	(0.59,1]	chr16	1272314	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1:ENST00000570319.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	100	2	1.40346	2.251715	3.09997	0.0346008	2.20596e-4	0.141505	0.00367555
chr22	29292546	29292606	18336654	0	+	0.433333	(0.42,0.455]	chr22	1558198	2	CDS	CDS:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	1.58962	2.251675	2.91373	0.0352	0.00892357	0.142054	0.0567495
chr3	12581807	12581879	3314775	0	+	0.444444	(0.42,0.455]	chr3	291637	1	CDS	CDS:UTR3:EXON_MRNA	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1:ENST00000677008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.58956	2.251645	2.91373	0.0485703	0.00892357	0.175495	0.0567495
chr6	79699706	79699805	7257897	0	+	0.373737	(0.36,0.39]	chr6	559150	3	UTR3	UTR3:EXON_MRNA	SH3BGRL2	ENSG00000198478.8	ENST00000369838.6	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.16717	2.251585	2.336	0.0154226	0.0152504	0.0834369	0.0828908
chr16	70571813	70571912	15730180	0	+	0.606061	(0.59,1]	chr16	1253031	1	UTR3	UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	106	2	2.0224	2.2515	2.4806	0.00380187	0.00183753	0.0307865	0.0184835
chr4	96152349	96152403	5536037	0	-	0.407407	(0.39,0.42]	chr4	442879	2	EXON_SMALL	EXON_SMALL	RNU6-34P	ENSG00000201744.1	ENST00000364874.1	snRNA	snRNA	snRNA	snRNA	14	50	2	1.36341	2.25134	3.13927	0.029381	9.67557e-5	0.129773	0.00175376
chr12	64418045	64418115	12921793	0	+	0.442857	(0.42,0.455]	chr12	1007012	1	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	9	36	2	1.7502	2.2512499999999998	2.7523	0.0153283	0.00848919	0.0828908	0.054798
chr18	23544959	23545054	17037404	0	-	0.442105	(0.42,0.455]	chr18	1400583	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.86513	2.25089	2.63665	0.0357107	0.0048172	0.147298	0.0365653
chr4	79317504	79317600	5483341	0	-	0.447917	(0.42,0.455]	chr4	439506	10	UTR3	UTR3:EXON_MRNA:INTRON	NAA11	ENSG00000156269.5	ENST00000511542.1:ENST00000513733.1:ENST00000286794.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	25	2	1.86513	2.25089	2.63665	0.0357107	0.0048172	0.147298	0.0365653
chr10	68573297	68573392	11089924	0	+	0.463158	(0.455,0.49]	chr10	842871	10	CDS	CDS:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.96875	2.2508049999999997	2.53286	0.0480352	0.0282409	0.180552	0.124386
chr10	97432524	97432616	11212390	0	+	0.663043	(0.59,1]	chr10	852981	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGAM1	ENSG00000171314.9	ENST00000334828.6:ENST00000467867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	93	2	1.50163	2.250615	2.9996	0.0299446	3.344e-4	0.129773	0.00472923
chr16	88731841	88731910	16074594	0	-	0.57971	(0.53,0.59]	chr16	1291704	3	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	1.85636	2.2505550000000003	2.64475	0.0197135	0.00453071	0.0983378	0.0351187
chr17	21002441	21002539	16477810	0	-	0.530612	(0.53,0.59]	chr17	1346694	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	35	2	1.85636	2.2505550000000003	2.64475	0.0197135	0.00453071	0.0983378	0.0351187
chr3	128069758	128069854	3725188	0	+	0.302083	(0.29,0.33]	chr3	318515	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000464451.5:ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	28	2	2.04737	2.25055	2.45373	0.0156405	0.00450176	0.084273700000000007	0.0344286
chr9	128185699	128185776	10863913	0	-	0.662338	(0.59,1]	chr9	823442	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1:ENST00000420484.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	71	2	2.11947	2.25052	2.38157	0.00815168	0.00534794	0.0535952	0.0392783
chr1	35921595	35921694	138972	0	+	0.454545	(0.42,0.455]	chr1	17250	20	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	1.93033	2.25042	2.57051	0.0505055	0.0265466	0.181202	0.120071
chr12	4300503	4300602	12704448	0	+	0.434343	(0.42,0.455]	chr12	985544	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	1.93033	2.25042	2.57051	0.0505055	0.0265466	0.181202	0.120071
chr3	160434095	160434190	3853124	0	+	0.452632	(0.42,0.455]	chr3	327498	4	UTR3	UTR3:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000344722.5:ENST00000462668.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	1.93033	2.25042	2.57051	0.0505055	0.0265466	0.181202	0.120071
chr4	17837626	17837713	4734775	0	+	0.448276	(0.42,0.455]	chr4	392888	1	CDS	CDS:UTR3:EXON_MRNA	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	1.93033	2.25042	2.57051	0.0505055	0.0265466	0.181202	0.120071
chr5	75360440	75360539	6037171	0	+	0.454545	(0.42,0.455]	chr5	473669	2	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000509085.5:ENST00000511986.1:ENST00000512053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	1.93033	2.25042	2.57051	0.0505055	0.0265466	0.181202	0.120071
chr9	72356052	72356101	10689120	0	-	0.44898	(0.42,0.455]	chr9	808828	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5:ENST00000343431.6:ENST00000471197.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	1.93033	2.25042	2.57051	0.0505055	0.0265466	0.181202	0.120071
chr1	20744896	20744993	883118	0	-	0.525773	(0.49,0.53]	chr1	91339	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	25	2	1.93897	2.2504	2.56183	0.0261296	0.0151118	0.118976	0.0820541
chr3	5172149	5172223	3278173	0	+	0.5	(0.49,0.53]	chr3	288748	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000419534.2:ENST00000468010.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.93897	2.2504	2.56183	0.0261296	0.0151118	0.118976	0.0820541
chr11	77021820	77021919	12031143	0	+	0.40404	(0.39,0.42]	chr11	927593	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000681955.1:ENST00000681411.1:ENST00000679924.1:ENST00000681251.1:ENST00000278544.9:ENST00000680351.1:ENST00000681258.1:ENST00000680164.1:ENST00000679759.1:ENST00000679813.1:ENST00000680624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	23	2	2.01081	2.2499450000000003	2.48908	0.0207537	0.0101318	0.100574	0.0626311
chr3	9468775	9468875	3298290	0	+	0.52	(0.49,0.53]	chr3	289585	2	SS5_PROX	SS5_PROX:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	2.01464	2.24976	2.48488	0.032052	0.0205094	0.133433	0.0991175
chr19	34400413	34400507	17300571	0	+	0.553191	(0.53,0.59]	chr19	1429897	5	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000592740.5:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding	4	26	2	2.0289	2.2494500000000004	2.47	0.0373899	0.0089333	0.146698	0.0567495
chr16	16016558	16016621	15567473	0	+	0.555556	(0.53,0.59]	chr16	1232689	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	26	2	2.0404	2.2494199999999998	2.45844	0.0362529	0.00930921	0.148525	0.0587563
chr10	97223850	97223949	11644394	0	-	0.30303	(0.29,0.33]	chr10	887008	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARHGAP19-SLIT1:ARHGAP19	ENSG00000269891.2:ENSG00000213390.11	ENST00000479633.2:ENST00000492211.5:ENST00000358308.7:ENST00000358531.9:ENST00000487035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	40	2	1.99395	2.249385	2.50482	0.0131526	3.79959e-4	0.0733631	0.00527038
chr4	144110846	144110942	5696545	0	-	0.302083	(0.29,0.33]	chr4	451524	17	UTR3	UTR3:EXON_MRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8:ENST00000642295.1:ENST00000510771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	92	2	2.1358	2.249385	2.36297	0.00165938	3.30364e-5	0.0172963	7.30822e-4
chr11	65892513	65892606	12423396	0	-	0.537634	(0.53,0.59]	chr11	964277	6	UTR3	UTR3:EXON_MRNA	FOSL1	ENSG00000175592.9	ENST00000448083.6:ENST00000312562.7:ENST00000531493.5	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	2.15403	2.24932	2.34461	0.0457008	0.0118065	0.168044	0.0686664
chr14	21211023	21211122	14520516	0	-	0.484848	(0.455,0.49]	chr14	1137229	20	UTR3	UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000553444.1:ENST00000556897.5:ENST00000420743.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	47	208	2	2.22905	2.24926	2.26947	3.63029e-5	3.37236e-5	8.25494e-4	7.93225e-4
chr1	226146222	226146319	1531750	0	-	0.515464	(0.49,0.53]	chr1	153270	17	UTR3	UTR3:EXON_MRNA	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	7	38	2	1.65324	2.249085	2.84493	0.0407792	5.26587e-4	0.163285	0.00679103
chr19	40802385	40802479	17331286	0	+	0.510638	(0.49,0.53]	chr19	1436248	6	INTRON	INTRON	RAB4B-EGLN2:EGLN2:CTC-490E21.12	ENSG00000171570.11:ENSG00000269858.6:ENSG00000268797.1	ENST00000594136.2:ENST00000303961.9:ENST00000406058.6:ENST00000593726.5:ENST00000597746.5:ENST00000601627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	24	2	1.85272	2.249	2.64528	0.0211739	0.0202736	0.101864	0.0984041
chr5	95484784	95484845	6716985	0	-	0.344262	(0.33,0.36]	chr5	516834	2	CDS	CDS:EXON_MRNA	TTC37	ENSG00000198677.12	ENST00000649566.1:ENST00000358746.7:ENST00000502768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	13	2	1.97842	2.2486450000000002	2.51887	0.0469469	0.0358636	0.171977	0.147298
chrX	110195465	110195564	19169115	0	-	0.343434	(0.33,0.36]	chrX	1630483	14	UTR3	UTR3:EXON_MRNA	AMMECR1	ENSG00000101935.11	ENST00000262844.10	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	1.97842	2.2486450000000002	2.51887	0.0469469	0.0358636	0.171977	0.147298
chr1	19357421	19357492	877961	0	-	0.478873	(0.455,0.49]	chr1	90685	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000674228.1:ENST00000459967.6:ENST00000457768.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	1.92777	2.248575	2.56938	0.0286531	0.00635313	0.128685	0.0449666
chr9	133363367	133363462	10880445	0	-	0.536842	(0.53,0.59]	chr9	825839	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6:ENST00000465565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	43	2	1.70379	2.24845	2.79311	0.0330081	6.84253e-4	0.138711	0.00836671
chr11	66643449	66643546	11991531	0	+	0.639175	(0.59,1]	chr11	922205	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	43	2	2.11074	2.24844	2.38614	0.0305	0.0128707	0.130204	0.0725185
chr16	30721284	30721380	15631034	0	+	0.635417	(0.59,1]	chr16	1240507	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	43	2	2.11074	2.24844	2.38614	0.0305	0.0128707	0.130204	0.0725185
chrX	135032907	135032998	18865054	0	+	0.692308	(0.59,1]	chrX	1607588	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RTL8C	ENSG00000134590.14	ENST00000257013.9:ENST00000464369.1:ENST00000495563.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	98	2	1.9588699999999999	2.24821	2.53755	0.00670615	0.00142129	0.0466206	0.0152931
chr2	241352140	241352239	2467894	0	+	0.393939	(0.39,0.42]	chr2	223257	3	UTR3	UTR3:EXON_MRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000360051.7:ENST00000616972.4:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000421717.1:ENST00000451310.1	protein_coding	protein_coding	protein_coding	protein_coding	13	59	2	1.961	2.24797	2.53494	0.00719538	1.68741e-4	0.0486209	0.0027484
chr12	49764545	49764642	12869288	0	+	0.402062	(0.39,0.42]	chr12	999645	18	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	15	66	2	2.04049	2.2479250000000004	2.45536	0.00344932	1.8019e-4	0.0293482	0.00291352
chr5	134779476	134779572	6231243	0	+	0.427083	(0.42,0.455]	chr5	485342	14	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	34	2	1.58967	2.247915	2.90616	0.026634	0.00162359	0.118265	0.0169915
chr7	128854592	128854682	8522522	0	+	0.711111	(0.59,1]	chr7	650455	3	CDS	CDS:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	4	44	2	1.96416	2.247815	2.53147	0.044741	0.00807544	0.166115	0.0531324
chr2	170962838	170962892	2206474	0	+	0.574074	(0.53,0.59]	chr2	201855	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GORASP2	ENSG00000115806.13	ENST00000234160.5:ENST00000493692.5:ENST00000442798.5:ENST00000486498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	42	2	2.23406	2.247515	2.26097	0.00870728	0.00389622	0.0558165	0.0313006
chr7	76048160	76048226	8342209	0	+	0.742424	(0.59,1]	chr7	636210	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	MDH2	ENSG00000146701.12	ENST00000461263.2:ENST00000443006.5:ENST00000315758.10:ENST00000461665.5:ENST00000432020.2:ENST00000490105.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	101	2	2.20362	2.2471550000000002	2.29069	0.00565413	0.00164656	0.0412424	0.0171652
chr4	48861049	48861145	4827549	0	+	0.364583	(0.36,0.39]	chr4	397856	4	UTR3	UTR3:EXON_MRNA	OCIAD1	ENSG00000109180.15	ENST00000509122.5:ENST00000396448.6:ENST00000381473.7:ENST00000264312.12:ENST00000444354.6:ENST00000425583.6:ENST00000508293.5:ENST00000513391.2:ENST00000502972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	50	2	1.99042	2.247065	2.50371	0.00277583	8.6826e-4	0.0241009	0.0106624
chr13	98452473	98452572	14117760	0	-	0.353535	(0.33,0.36]	chr13	1105044	74	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.07736	2.24688	2.4164	0.0442037	0.011989	0.172163	0.0700473
chr6	35834718	35834815	7677927	0	-	0.329897	(0.29,0.33]	chr6	588535	19	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	29	2	1.74949	2.246795	2.7441	0.0162875	0.00173745	0.0866586	0.0179204
chr8	144792029	144792129	10150955	0	-	0.68	(0.59,1]	chr8	764133	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:PRIMIRNA:INTRON	RPL8:MIR6850	ENSG00000161016.18:ENSG00000283764.1	ENST00000531975.5:ENST00000529163.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5:ENST00000612162.1:ENST00000531767.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	53	509	2	1.95999	2.2467449999999998	2.5335	6.53978e-4	1.8807e-5	0.00860229	4.61519e-4
chr14	54475846	54475944	14635656	0	-	0.316327	(0.29,0.33]	chr14	1146431	15	UTR3	UTR3:EXON_MRNA	GMFB	ENSG00000197045.13	ENST00000554908.5:ENST00000358056.8:ENST00000616146.4	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	1.99403	2.246695	2.49936	0.0202925	0.00917022	0.098158	0.0580029
chr12	76046536	76046636	13423837	0	-	0.31	(0.29,0.33]	chr12	1056597	101	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.99395	2.2466549999999996	2.49936	0.0131526	0.00917022	0.0733631	0.0580029
chr6	119177978	119178075	7919308	0	-	0.391753	(0.39,0.42]	chr6	606471	9	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	14	63	2	2.03728	2.24632	2.45536	0.00508196	1.8019e-4	0.038965	0.00291352
chr5	113018037	113018136	6153939	0	+	0.414141	(0.39,0.42]	chr5	480731	47	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	2.02663	2.24618	2.46573	0.0130764	0.00349672	0.0729985	0.0288123
chr5	178209329	178209388	6411574	0	+	0.542373	(0.53,0.59]	chr5	498718	1	CDS	CDS:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	7	39	2	1.85914	2.24615	2.63316	0.0128779	0.00474401	0.0721992	0.0361423
chr3	195782760	195782859	4661094	0	-	0.585859	(0.53,0.59]	chr3	385270	41	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	35	2	1.93217	2.246095	2.56002	0.0149802	0.00634904	0.0814081	0.0446708
chr8	86561099	86561199	9457735	0	+	0.34	(0.33,0.36]	chr8	720297	28	UTR3	UTR3:EXON_MRNA	CPNE3	ENSG00000085719.13	ENST00000517490.6:ENST00000614678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	29	2	2.00765	2.24596	2.48427	0.0287001	0.00150101	0.128757	0.0152367
chr6	7288504	7288601	7586878	0	-	0.391753	(0.39,0.42]	chr6	578694	7	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	100	2	2.04294	2.24573	2.44852	0.00244376	3.10656e-5	0.0229471	6.95382e-4
chr12	69589551	69589619	12943443	0	+	0.426471	(0.42,0.455]	chr12	1008976	2	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000299300.11:ENST00000551620.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2:ENST00000548787.1:ENST00000546850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	99	2	2.21156	2.245705	2.27985	4.60583e-4	1.65842e-4	0.00652447	0.00270436
chr1	160289472	160289569	1328661	0	-	0.391753	(0.39,0.42]	chr1	135960	10	UTR3	UTR3:EXON_MRNA	COPA	ENSG00000122218.16	ENST00000241704.8:ENST00000649963.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000648280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	76	2	1.41237	2.24563	3.07889	0.0377681	3.3014e-6	0.154092	1.09269e-4
chr21	44851168	44851267	18277423	0	-	0.535354	(0.53,0.59]	chr21	1550248	17	UTR3	UTR3:EXON_MRNA	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8	protein_coding	protein_coding	protein_coding	protein_coding	10	59	2	1.61684	2.24561	2.87438	0.0233353	1.55101e-4	0.110406	0.00258327
chr19	2269598	2269698	17195969	0	+	0.59	(0.53,0.59]	chr19	1412838	1	CDS_START	CDS_START:CDS:EXON_MRNA	OAZ1:LLfos-48D6.2	ENSG00000104904.12:ENSG00000273734.1	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000621615.1:ENST00000582888.8:ENST00000593012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	34	186	2	1.84953	2.24548	2.64143	8.74109e-4	8.15139e-6	0.0101169	2.545e-4
chr9	19200334	19200423	10595522	0	-	0.41573	(0.39,0.42]	chr9	801688	1	EXON_PSEUDO	EXON_PSEUDO	RP11-146N23.1	ENSG00000232176.1	ENST00000397390.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	42	2	2.00185	2.2454650000000003	2.48908	0.0101318	0.00255682	0.0626311	0.0228556
chr10	24584511	24584610	11416152	0	-	0.484848	(0.455,0.49]	chr10	870102	1	CDS	CDS:UTR3:EXON_MRNA	ARHGAP21	ENSG00000107863.19	ENST00000612832.4:ENST00000396432.7:ENST00000680286.1:ENST00000486374.5:ENST00000376410.7:ENST00000638156.1:ENST00000320481.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	1.98188	2.24546	2.50904	0.0310515	0.0226804	0.131262	0.105116
chr19	2206628	2206728	17195506	0	+	0.49	(0.455,0.49]	chr19	1412663	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DOT1L	ENSG00000104885.18	ENST00000398665.8	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.98188	2.24546	2.50904	0.0310515	0.0226804	0.131262	0.105116
chr19	9566039	9566136	17454614	0	-	0.381443	(0.36,0.39]	chr19	1459749	1	CDS	CDS:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.85489	2.24505	2.63521	0.0350721	0.00633242	0.141601	0.0446708
chr21	33550166	33550265	18101158	0	+	0.474747	(0.455,0.49]	chr21	1534525	8	CDS	CDS:EXON_MRNA:PRIMIRNA:INTRON	SON:MIR6501	ENSG00000159140.21:ENSG00000284448.1	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000290239.7	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	10	46	2	1.95018	2.244905	2.53963	0.0063042	0.00112063	0.044701	0.0128408
chr3	45688925	45689016	4150875	0	-	0.461538	(0.455,0.49]	chr3	346834	7	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LIMD1-AS1	ENSG00000230530.2	ENST00000658801.1:ENST00000429798.1:ENST00000655322.1	lncRNA	lncRNA	lncRNA	lncRNA	163	788	2	1.49062	2.24484	2.99906	0.0013593	3.45629e-9	0.014701	3.09745e-7
chr21	43094721	43094788	18271566	0	-	0.462687	(0.455,0.49]	chr21	1549532	2	CDS	CDS:UTR3:EXON_MRNA	U2AF1	ENSG00000160201.12	ENST00000291552.9:ENST00000380276.6:ENST00000464750.5:ENST00000475639.5:ENST00000459639.5:ENST00000478282.1:ENST00000471250.5:ENST00000486519.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	1.79605	2.244745	2.69344	0.0427708	0.0176068	0.168094	0.0925619
chr15	78893538	78893627	15042617	0	+	0.348315	(0.33,0.36]	chr15	1183461	1	CDS	CDS:EXON_MRNA:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000558830.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559258.5:ENST00000559690.5:ENST00000559158.5:ENST00000560422.5:ENST00000559751.1:ENST00000558923.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	37	2	1.70162	2.244735	2.78785	0.0112523	0.00115378	0.0665375	0.0130851
chr10	79354438	79354538	11148693	0	+	0.52	(0.49,0.53]	chr10	847447	7	UTR3	UTR3:EXON_MRNA	PPIF	ENSG00000108179.14	ENST00000225174.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.92759	2.24471	2.56183	0.0267071	0.0261296	0.118976	0.118504
chr14	94060527	94060613	14775239	0	-	0.523256	(0.49,0.53]	chr14	1157290	6	CDS	CDS:EXON_MRNA	DDX24	ENSG00000089737.17	ENST00000621632.5:ENST00000555762.1:ENST00000544005.5:ENST00000330836.9:ENST00000622786.4:ENST00000555054.1:ENST00000640432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	21	2	1.92759	2.24471	2.56183	0.0267071	0.0261296	0.118976	0.118504
chrX	135973763	135973852	19248675	0	-	0.52809	(0.49,0.53]	chrX	1635162	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MMGT1	ENSG00000169446.6	ENST00000305963.3:ENST00000679621.1:ENST00000680510.1	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.92759	2.24471	2.56183	0.0267071	0.0261296	0.118976	0.118504
chr11	75404812	75404865	12023103	0	+	0.660377	(0.59,1]	chr11	926993	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000524851.5:ENST00000526248.5:ENST00000525690.1:ENST00000525933.1:ENST00000530170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	475	2	2.24127	2.24466	2.24805	2.02581e-4	9.24502e-5	0.0034407	0.00169222
chr7	150332626	150332721	8614716	0	+	0.273684	[0,0.29]	chr7	657695	17	UTR3	UTR3:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.52343	2.24438	2.96533	0.0301267	0.0024246	0.130016	0.0227938
chr4	173333549	173333649	5798086	0	-	0.57	(0.53,0.59]	chr4	456436	1	CDS_START	CDS_START:CDS:EXON_MRNA	HMGB2	ENSG00000164104.12	ENST00000296503.10:ENST00000446922.6:ENST00000438704.6:ENST00000511316.1:ENST00000506267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	165	2	1.98486	2.244305	2.50375	5.10986e-4	2.93177e-5	0.00715356	6.66694e-4
chr3	17158038	17158135	4059100	0	-	0.381443	(0.36,0.39]	chr3	341127	10	UTR3	UTR3:EXON_MRNA	TBC1D5	ENSG00000131374.14	ENST00000253692.11	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	2.01657	2.244255	2.47194	0.0118295	0.00204665	0.0692539	0.0200766
chr12	98548655	98548755	13036872	0	+	0.28	[0,0.29]	chr12	1014988	9	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6	protein_coding	protein_coding	protein_coding	protein_coding	26	78	2	1.7185	2.24418	2.76986	0.00508755	8.61431e-6	0.039005	2.4335e-4
chr17	5432776	5432855	16421503	0	-	0.240506	[0,0.29]	chr17	1338171	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CTC-524C5.2:C1QBP	ENSG00000263272.1:ENSG00000108561.8	ENST00000575890.1:ENST00000225698.8:ENST00000574444.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	17	2	2.08434	2.244145	2.40395	0.0210081	0.0181581	0.101116	0.0945306
chr16	23689584	23689676	15595341	0	+	0.641304	(0.59,1]	chr16	1236747	2	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000564794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	59	2	1.63662	2.243925	2.85123	0.0410169	0.0022846	0.163285	0.0209856
chr3	31636258	31636355	3392499	0	+	0.350515	(0.33,0.36]	chr3	295101	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	1.69981	2.24383	2.78785	0.0370662	0.00115378	0.145667	0.0130851
chr7	76328583	76328683	8863401	0	-	0.58	(0.53,0.59]	chr7	677476	19	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	24	135	2	2.04728	2.24367	2.44006	7.48364e-4	5.87627e-5	0.00935278	0.00117993
chr10	91666779	91666870	11621724	0	-	0.483516	(0.455,0.49]	chr10	884667	1	EXON_PSEUDO	EXON_PSEUDO	GAPDHP28	ENSG00000213449.2	ENST00000455134.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	31	2	2.12994	2.24355	2.35716	0.0304832	0.00260884	0.130204	0.0230635
chr14	101983199	101983290	14495127	0	+	0.351648	(0.33,0.36]	chr14	1132967	3	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000680001.1:ENST00000681668.1:ENST00000645114.2:ENST00000681751.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	23	2	2.16995	2.24346	2.31697	0.0124739	0.00966431	0.0713206	0.0606263
chr21	33524932	33525000	18220548	0	-	0.529412	(0.49,0.53]	chr21	1546378	2	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000467575.1:ENST00000361093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	51	2	1.86872	2.243245	2.61777	0.00487661	0.00172617	0.0366648	0.0178146
chr19	11131709	11131805	17230308	0	+	0.479167	(0.455,0.49]	chr19	1419642	3	UTR3	UTR3:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000558013.5:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	2.12994	2.2431900000000002	2.35644	0.0304832	0.00555877	0.130204	0.0405952
chr8	35525469	35525567	9786516	0	-	0.469388	(0.455,0.49]	chr8	740155	4	EXON_PSEUDO	EXON_PSEUDO	LSM12P1	ENSG00000232024.2	ENST00000411836.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	26	2	2.12994	2.2431900000000002	2.35644	0.0304832	0.00555877	0.130204	0.0405952
chr8	123349364	123349444	10057172	0	-	0.4625	(0.455,0.49]	chr8	756662	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5:ENST00000521496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	26	2	2.12994	2.2431900000000002	2.35644	0.0304832	0.00555877	0.130204	0.0405952
chr19	9648968	9649068	17455060	0	-	0.48	(0.455,0.49]	chr19	1459822	73	UTR3	UTR3:EXON_MRNA	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.95898	2.24316	2.52734	0.047107	0.00792433	0.172269	0.0523592
chr17	35723989	35724086	16207502	0	+	0.329897	(0.29,0.33]	chr17	1309154	4	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	21	2	2.14426	2.243145	2.34203	0.0142448	0.010113	0.077929	0.0626311
chr9	125149672	125149772	10855779	0	-	0.41	(0.39,0.42]	chr9	822323	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	2.10425	2.243055	2.38186	0.00810106	0.00601449	0.0528637	0.0434483
chr11	46763480	46763555	12383695	0	-	0.386667	(0.36,0.39]	chr11	956064	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000526943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	1.85489	2.24302	2.63115	0.0350721	0.0245975	0.141601	0.114841
chr12	93400176	93400275	13019155	0	+	0.393939	(0.39,0.42]	chr12	1013446	9	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	19	78	2	2.05328	2.2428999999999997	2.43252	7.1143e-4	3.83902e-4	0.00856116	0.00574033
chr4	17614654	17614754	4734288	0	+	0.68	(0.59,1]	chr4	392781	1	CDS_START	CDS_START:CDS:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000506409.1:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	32	2	1.96416	2.24283	2.5215	0.044741	0.032241	0.166115	0.135671
chr21	33553009	33553109	18101187	0	+	0.47	(0.455,0.49]	chr21	1534527	24	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	34	2	1.56466	2.242825	2.92099	0.0309562	0.00138399	0.131262	0.0143168
chr5	175527801	175527898	6397802	0	+	0.360825	(0.36,0.39]	chr5	496826	12	UTR3	UTR3:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.81435	2.242725	2.6711	0.0302191	0.00434596	0.129773	0.0335517
chr16	28383117	28383208	15905010	0	-	0.681319	(0.59,1]	chr16	1273457	1	CDS	CDS:EXON_MRNA	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.36874	2.242605	3.11647	0.0535348	0.00535979	0.185328	0.0406564
chr20	483560	483660	17871449	0	-	0.49	(0.455,0.49]	chr20	1511949	49	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	46	2	1.94735	2.242565	2.53778	0.00680997	0.00105636	0.0465162	0.0117237
chr3	9470458	9470552	3298307	0	+	0.457447	(0.455,0.49]	chr3	289589	1	CDS	CDS:UTR3:EXON_MRNA	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	2.12994	2.242545	2.35515	0.0304832	0.0140117	0.130204	0.0767536
chr3	33114077	33114177	3397525	0	+	0.77	(0.59,1]	chr3	295466	1	CDS_START	CDS_START:CDS:EXON_MRNA	CRTAP	ENSG00000170275.15	ENST00000320954.11:ENST00000449224.1	protein_coding	protein_coding	protein_coding	protein_coding	4	43	2	2.11894	2.242435	2.36593	0.0293157	0.0141097	0.128478	0.077233
chr7	44843276	44843354	8800458	0	-	0.576923	(0.53,0.59]	chr7	671385	1	CDS	CDS:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9:ENST00000350771.7:ENST00000349299.7:ENST00000381124.9:ENST00000521529.5:ENST00000446531.1	protein_coding	protein_coding	protein_coding	protein_coding	6	33	2	1.96946	2.24223	2.515	0.0292633	0.0082201	0.129773	0.0534646
chr12	79775336	79775435	13433698	0	-	0.343434	(0.33,0.36]	chr12	1057192	19	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	2.22102	2.2419650000000004	2.26291	0.00736622	0.00241279	0.0490627	0.0218094
chrX	136874311	136874381	19250716	0	-	0.5	(0.49,0.53]	chrX	1635448	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	40	2	1.81941	2.2419000000000002	2.66439	0.0158768	0.00134122	0.0854674	0.0139818
chr3	120596359	120596459	3693600	0	+	0.59	(0.53,0.59]	chr3	315837	1	CDS_START	CDS_START:CDS:EXON_MRNA	NDUFB4	ENSG00000065518.8	ENST00000485064.1:ENST00000184266.3:ENST00000492739.1:ENST00000461682.1:ENST00000491335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	68	2	1.92677	2.24155	2.55633	0.00482553	4.55091e-4	0.0365844	0.006455
chr12	55968777	55968862	12896901	0	+	0.541176	(0.53,0.59]	chr12	1003787	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CDK2	ENSG00000123374.11	ENST00000556464.5:ENST00000555408.5:ENST00000553376.5:ENST00000266970.9:ENST00000440311.6:ENST00000354056.4:ENST00000554619.5:ENST00000556276.5:ENST00000556656.5:ENST00000556146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	27	2	1.70379	2.2415	2.77921	0.0330081	0.0132865	0.138711	0.0740932
chr7	25123304	25123403	8730811	0	-	0.272727	[0,0.29]	chr7	666449	48	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7:ENST00000409409.5	protein_coding	protein_coding	protein_coding	protein_coding	32	88	2	2.10203	2.241435	2.38084	2.98656e-4	8.74153e-5	0.00471941	0.0016272
chr16	23581093	23581173	15895336	0	-	0.475	(0.455,0.49]	chr16	1272279	2	UTR3	UTR3:EXON_MRNA	NDUFAB1	ENSG00000004779.10	ENST00000007516.8:ENST00000562133.5:ENST00000484769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	2.18128	2.2413350000000003	2.30139	0.0530131	0.0111696	0.195536	0.0665375
chr7	5925687	5925782	8112822	0	+	0.463158	(0.455,0.49]	chr7	620187	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCZ1	ENSG00000122674.12	ENST00000325974.9:ENST00000628813.2:ENST00000474507.1:ENST00000496860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	21	2	2.18128	2.2413350000000003	2.30139	0.0530131	0.0111696	0.195536	0.0665375
chr1	25448870	25448934	104497	0	+	0.453125	(0.42,0.455]	chr1	12246	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MACO1	ENSG00000204178.11	ENST00000399766.7:ENST00000374343.5:ENST00000647928.1:ENST00000470035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	25	2	2.1201	2.241285	2.36247	0.0462889	0.00744913	0.176878	0.0492835
chr5	151805017	151805111	6299775	0	+	0.329787	(0.29,0.33]	chr5	491958	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	45	2	1.96139	2.24127	2.52115	0.00262332	0.00111965	0.023151	0.0128408
chr18	35340550	35340650	17076727	0	-	0.42	(0.39,0.42]	chr18	1402857	1	CDS_START	CDS_START:CDS:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5:ENST00000590140.1:ENST00000589539.1:ENST00000593130.1	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.01677	2.24125	2.46573	0.0235818	0.00349672	0.111323	0.0288123
chr9	131276079	131276179	10870527	0	-	0.54	(0.53,0.59]	chr9	824597	1	CDS_START	CDS_START:CDS:EXON_MRNA	FAM78A	ENSG00000126882.13	ENST00000372271.4	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	1.96733	2.241165	2.515	0.0292633	0.022694	0.129773	0.105117
chr3	33535308	33535384	4113666	0	-	0.407895	(0.39,0.42]	chr3	343738	2	CDS	CDS:EXON_MRNA	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000487553.5:ENST00000635664.1:ENST00000476251.1:ENST00000494261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	2.18155	2.24105	2.30055	0.0283931	0.0070645	0.127654	0.0477419
chr12	31281937	31282033	13279797	0	-	0.364583	(0.36,0.39]	chr12	1041229	15	UTR3	UTR3:EXON_MRNA	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	42	2	1.57187	2.241035	2.9102	0.0154357	5.15161e-4	0.0835025	0.00719513
chr12	123597509	123597606	13127196	0	+	0.298969	(0.29,0.33]	chr12	1025792	9	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding	15	53	2	2.09822	2.240735	2.38325	0.00565103	2.12433e-4	0.0422191	0.00329689
chr11	62594980	62595070	12409379	0	-	0.555556	(0.53,0.59]	chr11	961050	1	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.69162	2.24071	2.7898	0.0342431	0.0128364	0.141233	0.0719798
chr19	305758	305851	17414752	0	-	0.548387	(0.53,0.59]	chr19	1451448	3	UTR3	UTR3:EXON_MRNA	MIER2	ENSG00000105556.12	ENST00000264819.7:ENST00000619835.4	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.69162	2.24071	2.7898	0.0342431	0.0128364	0.141233	0.0719798
chr1	19199702	19199754	876986	0	-	0.480769	(0.455,0.49]	chr1	90408	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.96875	2.2406800000000002	2.51261	0.0480352	0.00280343	0.180552	0.0242354
chr6	10723159	10723241	7048538	0	+	0.670732	(0.59,1]	chr6	539737	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	62	2	2.01575	2.240295	2.46484	0.0201728	0.00383661	0.0978331	0.0310411
chr17	58090670	58090770	16287307	0	+	0.55	(0.53,0.59]	chr17	1320910	15	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	16	88	2	2.01651	2.24022	2.46393	0.00136737	4.31686e-4	0.0141751	0.00622232
chr17	39204524	39204548	16219494	0	+	0.708333	(0.59,1]	chr17	1310973	1	CDS	CDS:UTR3:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	46	2	1.86913	2.239935	2.61074	0.025486	0.0194297	0.117089	0.0973387
chr11	32934137	32934237	11899068	0	+	0.39	(0.36,0.39]	chr11	909001	25	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	2.1437	2.2398499999999997	2.336	0.0340515	0.0154226	0.141465	0.0834369
chr16	23523678	23523776	15894969	0	-	0.377551	(0.36,0.39]	chr16	1272199	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EARS2	ENSG00000103356.18	ENST00000449606.7:ENST00000674054.1:ENST00000564987.1:ENST00000564776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	2.1437	2.2398499999999997	2.336	0.0340515	0.0154226	0.141465	0.0834369
chr15	42532103	42532198	14892405	0	+	0.547368	(0.53,0.59]	chr15	1170513	7	UTR3	UTR3:EXON_MRNA:INTRON	SNAP23	ENSG00000092531.10	ENST00000349777.5:ENST00000249647.8:ENST00000563873.5:ENST00000563830.2:ENST00000568841.5	protein_coding	protein_coding	protein_coding	protein_coding	5	32	2	2.0404	2.2394600000000002	2.43852	0.0362529	0.00373745	0.148525	0.0303359
chr19	6440259	6440357	17442459	0	-	0.438776	(0.42,0.455]	chr19	1456911	3	UTR3	UTR3:EXON_MRNA:INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1:ENST00000301454.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	29	2	2.07474	2.239305	2.40387	0.0338882	0.00231472	0.139841	0.0219615
chr1	154157540	154157638	1302314	0	-	0.632653	(0.59,1]	chr1	131065	24	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11:ENST00000513769.5:ENST00000302206.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	81	2	2.00297	2.23897	2.47497	0.0125191	0.00177395	0.0713905	0.0172819
chr1	37862028	37862123	949072	0	-	0.210526	[0,0.29]	chr1	99906	15	UTR3	UTR3:EXON_MRNA	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	2.16074	2.238855	2.31697	0.0222978	0.00756459	0.105845	0.0499309
chr6	85619342	85619417	7825846	0	-	0.36	(0.33,0.36]	chr6	599574	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	31	2	2.01701	2.238645	2.46028	0.00697043	0.00381804	0.0474694	0.0309081
chr1	148750178	148750275	458200	0	+	0.298969	(0.29,0.33]	chr1	45663	8	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.02337	2.23855	2.45373	0.0217631	0.0156405	0.103469	0.084273700000000007
chr5	154816630	154816727	6315037	0	+	0.546392	(0.53,0.59]	chr5	492515	27	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.60439	2.238515	2.87264	0.0243675	0.00168899	0.111797	0.0175515
chr2	47478436	47478519	1785273	0	+	0.385542	(0.36,0.39]	chr2	172523	3	CDS	CDS:UTR3:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	1.85874	2.23842	2.6181	0.0415243	0.00176908	0.164804	0.0172426
chr6	34246038	34246134	7124355	0	+	0.635417	(0.59,1]	chr6	548262	13	UTR3	UTR3:EXON_MRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding	30	286	2	2.22671	2.2382850000000003	2.24986	5.26975e-4	1.94442e-4	0.00735325	0.00308829
chr19	1611125	1611222	17419519	0	-	0.247423	[0,0.29]	chr19	1452654	20	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000592395.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000593064.5:ENST00000592628.5:ENST00000587425.5:ENST00000585731.5:ENST00000590684.5:ENST00000590436.5:ENST00000651991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	24	2	1.56356	2.238225	2.91289	0.0431251	9.07288e-4	0.161433	0.0110102
chr12	53308724	53308815	13338799	0	-	0.538462	(0.53,0.59]	chr12	1049038	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000550033.5:ENST00000672900.1:ENST00000546393.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	33	2	1.90953	2.23809	2.56665	0.0517711	0.00209536	0.193577	0.0196588
chr7	104670475	104670575	8445853	0	+	0.4	(0.39,0.42]	chr7	645154	10	INTRON	INTRON	LHFPL3	ENSG00000187416.13	ENST00000424859.7:ENST00000401970.3:ENST00000683240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	46	2	1.9926	2.238085	2.48357	0.00367258	0.00171404	0.0300803	0.017714
chr1	26255269	26255368	108658	0	+	0.494949	(0.49,0.53]	chr1	12909	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000480446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	2.09506	2.238015	2.38097	0.0425419	0.00820526	0.167547	0.05339
chr9	83970251	83970331	10712881	0	-	0.4375	(0.42,0.455]	chr9	810486	1	CDS	CDS:EXON_MRNA:PRIMIRNA	HNRNPK:MIR7-1	ENSG00000165119.21:ENSG00000284179.1	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1:ENST00000384871.1:ENST00000492865.1:ENST00000481820.6:ENST00000457156.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	18	85	2	1.68829	2.237995	2.7877	0.00808502	1.78315e-5	0.0531904	4.4446e-4
chr8	97725368	97725468	9506393	0	+	0.24	[0,0.29]	chr8	722727	8	UTR3	UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8	protein_coding	protein_coding	protein_coding	protein_coding	10	33	2	1.65198	2.2379249999999997	2.82387	0.0369328	2.4558e-4	0.151225	0.00371192
chr17	19446361	19446459	16472799	0	-	0.632653	(0.59,1]	chr17	1345836	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	AC004448.5:RPS2P46	ENSG00000235979.9:ENSG00000189343.7	ENST00000658570.1:ENST00000627753.1:ENST00000668984.1:ENST00000629630.1:ENST00000655270.1:ENST00000456537.6:ENST00000458332.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	16	146	2	1.5602	2.237905	2.91561	0.0131527	1.09901e-4	0.0737669	0.00211239
chr1	631844	631940	487	0	+	0.40625	(0.39,0.42]	chr1	106	9	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	60	217	2	1.98983	2.237895	2.48596	7.72355e-5	1.28587e-5	0.00161793	3.38348e-4
chr1	10461389	10461489	856674	0	-	0.52	(0.49,0.53]	chr1	86469	50	UTR3	UTR3:EXON_MRNA	DFFA	ENSG00000160049.12	ENST00000377038.8	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.99044	2.23766	2.48488	0.0435903	0.032052	0.170594	0.133433
chr11	47835729	47835809	12389943	0	-	0.5	(0.49,0.53]	chr11	957548	2	CDS	CDS:UTR3:EXON_MRNA	NUP160	ENSG00000030066.13	ENST00000378460.6:ENST00000530326.5:ENST00000528071.5:ENST00000528501.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	17	2	1.99044	2.23766	2.48488	0.0435903	0.032052	0.170594	0.133433
chr2	200815666	200815762	2309309	0	+	0.520833	(0.49,0.53]	chr2	208926	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BZW1	ENSG00000082153.18	ENST00000450637.5:ENST00000410110.6:ENST00000452206.5:ENST00000409600.6:ENST00000464483.1:ENST00000409226.5:ENST00000452790.6:ENST00000447069.5:ENST00000419090.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	17	2	1.99044	2.23766	2.48488	0.0435903	0.032052	0.170594	0.133433
chr6	135218278	135218377	7415100	0	+	0.323232	(0.29,0.33]	chr6	568361	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000531845.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	50	2	2.17071	2.23766	2.30461	0.00269699	5.08758e-4	0.0243391	0.00661955
chr7	133034523	133034606	9078000	0	-	0.46988	(0.455,0.49]	chr7	693064	3	PRIMIRNA	PRIMIRNA:INTRON	CHCHD3:MIR3654	ENSG00000106554.13:ENSG00000284135.1	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2:ENST00000639535.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	30	143	2	1.54216	2.23764	2.93312	0.00647046	7.82722e-7	0.0454205	3.24902e-5
chr1	162576912	162576981	507717	0	+	0.405797	(0.39,0.42]	chr1	54781	3	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.13132	2.237405	2.34349	0.02908	0.0169272	0.127648	0.0890655
chr19	12922648	12922747	17472048	0	-	0.585859	(0.53,0.59]	chr19	1463323	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	1.56485	2.237315	2.90978	0.0367536	0.00857883	0.145024	0.0552386
chr3	185917220	185917319	4628251	0	-	0.343434	(0.33,0.36]	chr3	382241	28	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	90	2	1.9608	2.237085	2.51337	0.0014749	3.11038e-5	0.0157789	6.96193e-4
chr2	182925301	182925401	3059900	0	-	0.25	[0,0.29]	chr2	271262	163	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	13	41	2	2.18537	2.23695	2.28853	0.00443139	0.00106927	0.0344729	0.0118238
chr19	49098641	49098704	17368565	0	+	0.428571	(0.42,0.455]	chr19	1442408	1	CDS	CDS:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	28	2	1.87908	2.23685	2.59462	0.0189336	0.0062772	0.0958835	0.0445415
chr14	19366596	19366695	14515782	0	-	0.313131	(0.29,0.33]	chr14	1136230	91	INTRON	INTRON	LINC01297	ENSG00000274827.4	ENST00000620186.4:ENST00000621052.1	lncRNA	lncRNA	lncRNA	lncRNA	208	617	2	1.69959	2.236795	2.774	2.53672e-4	1.08003e-8	0.00381572	9.14059e-7
chr21	8392938	8393037	18041459	0	+	0.636364	(0.59,1]	chr21	1530861	41	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	3667	34093	2	2.08985	2.23654	2.38323	5.96598e-5	1.09367e-5	0.00119553	3.25455e-4
chrX	154783426	154783507	19279853	0	-	0.567901	(0.53,0.59]	chrX	1638737	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	132	2	1.67289	2.23653	2.80017	0.00662495	5.41988e-6	0.0456243	1.6513e-4
chr22	38683939	38684038	18367289	0	+	0.444444	(0.42,0.455]	chr22	1562625	2	UTR3	UTR3:EXON_MRNA	TOMM22	ENSG00000100216.6	ENST00000216034.6:ENST00000492561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	19	2	1.72071	2.236505	2.7523	0.0499984	0.0153283	0.179758	0.0828908
chr5	83057083	83057154	6673248	0	-	0.43662	(0.42,0.455]	chr5	515110	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5:ENST00000511118.1:ENST00000504622.5:ENST00000509770.1:ENST00000503892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	19	2	1.72071	2.236505	2.7523	0.0499984	0.0153283	0.179758	0.0828908
chr5	95898429	95898524	6719577	0	-	0.421053	(0.42,0.455]	chr5	517193	3	CDS	CDS:EXON_MRNA	ELL2	ENSG00000118985.16	ENST00000237853.9	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.72071	2.236505	2.7523	0.0499984	0.0153283	0.179758	0.0828908
chr12	93399279	93399379	13019146	0	+	0.48	(0.455,0.49]	chr12	1013445	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	12	57	2	1.94735	2.236385	2.52542	0.00680997	3.01597e-4	0.0465162	0.00439897
chr6	31640791	31640864	7661385	0	-	0.589041	(0.53,0.59]	chr6	584812	1	CDS	CDS:UTR3:EXON_MRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000422948.5:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	52	2	1.91272	2.23637	2.56002	0.00634904	0.00387128	0.0446708	0.0311181
chr10	73383633	73383690	11571486	0	-	0.333333	(0.33,0.36]	chr10	880881	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	1.82394	2.236225	2.64851	0.0494504	0.00492353	0.18557	0.0366648
chr16	11846551	11846602	15856763	0	-	0.352941	(0.33,0.36]	chr16	1266800	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000574823.5:ENST00000570767.5:ENST00000572090.5:ENST00000571988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	20	2	1.82394	2.236225	2.64851	0.0494504	0.00492353	0.18557	0.0366648
chr12	122505328	122505427	13590793	0	-	0.282828	[0,0.29]	chr12	1070380	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RSRC2	ENSG00000111011.18	ENST00000331738.12:ENST00000532695.5:ENST00000433877.6:ENST00000527173.6:ENST00000392442.6:ENST00000525332.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	30	2	2.05508	2.23618	2.41728	0.00812605	0.00228359	0.0534435	0.0209856
chr10	72274368	72274421	11111166	0	+	0.660377	(0.59,1]	chr10	845353	2	CDS	CDS:UTR5:EXON_MRNA	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	52	2	2.17889	2.23604	2.29319	0.025085	0.00750123	0.116848	0.0495953
chr3	50607047	50607140	4179540	0	-	0.494624	(0.49,0.53]	chr3	352073	7	UTR3	UTR3:EXON_MRNA	CISH	ENSG00000114737.16	ENST00000348721.4:ENST00000491847.1:ENST00000443053.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	58	2	2.08124	2.235995	2.39075	0.00224283	0.00165066	0.0213415	0.0163614
chr8	26391262	26391362	9238456	0	+	0.48	(0.455,0.49]	chr8	707555	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000520077.5:ENST00000523949.5:ENST00000523515.5:ENST00000520409.5:ENST00000518611.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	1.61991	2.2358149999999997	2.85172	0.0447186	0.010864	0.166115	0.0643837
chr9	107329847	107329943	10410544	0	+	0.364583	(0.36,0.39]	chr9	784033	3	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	20	85	2	1.95472	2.235665	2.51661	0.00427139	3.02049e-5	0.0334337	6.78876e-4
chr10	68984381	68984479	11093421	0	+	0.418367	(0.39,0.42]	chr10	843302	17	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	33	134	2	2.18983	2.235245	2.28066	1.04461e-4	9.41075e-5	0.00187688	0.00186976
chr18	77975761	77975861	17184283	0	-	0.39	(0.36,0.39]	chr18	1410247	25	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	10	41	2	2.17039	2.2350649999999996	2.29974	0.00926291	0.0015037	0.0586162	0.0152588
chrX	130013344	130013443	18857819	0	+	0.59596	(0.59,1]	chrX	1606885	5	CDS	CDS:EXON_MRNA	BCORL1	ENSG00000085185.16	ENST00000218147.11:ENST00000540052.6	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	2.04362	2.235005	2.42639	0.0409084	0.036186	0.163285	0.145024
chr7	150332532	150332626	8614715	0	+	0.308511	(0.29,0.33]	chr7	657695	16	UTR3	UTR3:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	11	38	2	1.88142	2.234935	2.58845	0.0142455	4.30021e-4	0.0779233	0.00581002
chr7	44832268	44832365	8800344	0	-	0.329897	(0.29,0.33]	chr7	671367	4	UTR3	UTR3:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9	protein_coding	protein_coding	protein_coding	protein_coding	10	32	2	2.19551	2.23491	2.27431	0.00432139	0.00356761	0.0335176	0.0301227
chr1	95143901	95144001	361621	0	+	0.37	(0.36,0.39]	chr1	35650	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000456991.5:ENST00000604534.5:ENST00000455656.1:ENST00000463375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	51	2	2.00093	2.23482	2.46871	0.00996106	2.61929e-4	0.0621728	0.0039188
chr3	43718847	43718946	3441066	0	+	0.292929	(0.29,0.33]	chr3	299384	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000649763.1:ENST00000643140.1:ENST00000644371.2:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000463153.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	82	2	1.83194	2.23477	2.6376	0.00132422	4.29194e-5	0.0138834	0.00100019
chr15	41351058	41351129	14885943	0	+	0.492958	(0.49,0.53]	chr15	1169328	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000560177.5:ENST00000557840.5:ENST00000560898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	67	2	1.73918	2.2347099999999998	2.7302399999999998	0.0213952	4.54255e-5	0.102813	9.47289e-4
chr21	39348991	39349065	18257138	0	-	0.702703	(0.59,1]	chr21	1548179	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000380747.5:ENST00000443046.5:ENST00000464078.5:ENST00000491183.5:ENST00000479586.5:ENST00000482733.1:ENST00000463631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	109	2	2.00839	2.2345949999999997	2.4608	0.00407427	0.00250688	0.0324137	0.0225914
chr1	231000137	231000236	751445	0	+	0.343434	(0.33,0.36]	chr1	76393	1	UTR3	UTR3:EXON_MRNA	ARV1	ENSG00000173409.14	ENST00000310256.7:ENST00000366658.6:ENST00000459891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	26	2	2.09934	2.23459	2.36984	0.0120497	0.00564505	0.0694419	0.041184
chrX	154349648	154349721	19277959	0	-	0.589041	(0.53,0.59]	chrX	1638243	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000498491.5:ENST00000462590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	52	2	2.08252	2.234395	2.38627	0.0050389	0.00217924	0.0372588	0.0208941
chr14	68789335	68789433	14684724	0	-	0.5	(0.49,0.53]	chr14	1149951	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZFP36L1	ENSG00000185650.10	ENST00000555997.1:ENST00000439696.3:ENST00000336440.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.90685	2.23434	2.56183	0.0534351	0.0261296	0.184995	0.118976
chr20	34921072	34921139	17767007	0	+	0.522388	(0.49,0.53]	chr20	1500575	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000491533.5:ENST00000490464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	1.90685	2.23434	2.56183	0.0534351	0.0261296	0.184995	0.118976
chr20	62306196	62306258	17861326	0	+	0.516129	(0.49,0.53]	chr20	1510001	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ADRM1	ENSG00000130706.13	ENST00000491935.5:ENST00000620230.4:ENST00000253003.7:ENST00000462554.2:ENST00000465805.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	1.90685	2.23434	2.56183	0.0534351	0.0261296	0.184995	0.118976
chr5	132881058	132881158	6837699	0	-	0.5	(0.49,0.53]	chr5	523236	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	AFF4	ENSG00000072364.13	ENST00000265343.10	protein_coding	protein_coding	protein_coding	protein_coding	3	17	2	1.90685	2.23434	2.56183	0.0534351	0.0261296	0.184995	0.118976
chr5	146478492	146478572	6281251	0	+	0.5	(0.49,0.53]	chr5	489575	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TCERG1	ENSG00000113649.13	ENST00000507175.5:ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000509810.5:ENST00000515203.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	1.90685	2.23434	2.56183	0.0534351	0.0261296	0.184995	0.118976
chr7	99416137	99416198	8422441	0	+	0.491803	(0.49,0.53]	chr7	641935	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	BUD31	ENSG00000106245.11	ENST00000403633.6:ENST00000427499.5:ENST00000222969.10:ENST00000496696.5:ENST00000471813.1:ENST00000456893.6:ENST00000431419.1:ENST00000466798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	1.90685	2.23434	2.56183	0.0534351	0.0261296	0.184995	0.118976
chr1	109593236	109593336	399348	0	+	0.36	(0.33,0.36]	chr1	38901	10	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.82006	2.234285	2.64851	0.0323353	0.00492353	0.135977	0.0366648
chr19	6414300	6414390	17442186	0	-	0.666667	(0.59,1]	chr19	1456772	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000597656.5:ENST00000595223.5	protein_coding	protein_coding	protein_coding	protein_coding	17	162	2	2.01236	2.2340400000000002	2.45572	0.00202369	5.06706e-4	0.0191325	0.00709888
chr3	25598406	25598477	4093017	0	-	0.464789	(0.455,0.49]	chr3	342039	1	CDS	CDS:UTR3:EXON_MRNA	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	16	2	1.95898	2.23401	2.50904	0.047107	0.0310515	0.172269	0.131262
chr6	87656902	87656982	7270985	0	+	0.475	(0.455,0.49]	chr6	560531	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ORC3	ENSG00000135336.16	ENST00000546266.5:ENST00000257789.4:ENST00000392844.8:ENST00000681069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	16	2	1.95898	2.23401	2.50904	0.047107	0.0310515	0.172269	0.131262
chr1	39004245	39004341	145754	0	+	0.416667	(0.39,0.42]	chr1	18077	3	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	12	51	2	2.0861	2.23398	2.38186	0.00601449	0.0012097	0.0434483	0.0129616
chr4	82848890	82848977	5496732	0	-	0.45977	(0.455,0.49]	chr4	440213	2	CDS	CDS:EXON_MRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5	protein_coding	protein_coding	protein_coding	protein_coding	14	68	2	1.56242	2.233965	2.90551	0.0198935	2.43364e-5	0.0966287	5.70869e-4
chr10	67045507	67045607	11547557	0	-	0.57	(0.53,0.59]	chr10	878717	1189	INTRON	INTRON	CTNNA3	ENSG00000183230.18	ENST00000684154.1:ENST00000682758.1:ENST00000683963.1:ENST00000433211.7:ENST00000682945.1:ENST00000683624.1:ENST00000683272.1:ENST00000494580.1:ENST00000683771.1:ENST00000682166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	97	602	2	1.35591	2.233955	3.112	0.00509739	5.33653e-9	0.0390492	4.50695e-7
chr21	8401259	8401359	18041543	0	+	0.49	(0.455,0.49]	chr21	1530863	56	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1943	8295	2	2.23155	2.233835	2.23612	1.70978e-6	1.2809e-6	6.27699e-5	5.45455e-5
chrX	153949147	153949246	19275570	0	-	0.434343	(0.42,0.455]	chrX	1637875	17	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	12	48	2	1.54178	2.2334549999999997	2.92513	0.0183605	3.39829e-4	0.0928041	0.00479167
chr13	49691324	49691424	14020083	0	-	0.79	(0.59,1]	chr13	1099633	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5:ENST00000378268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	43	2	2.04362	2.2334300000000002	2.42324	0.036186	0.0116918	0.145024	0.0686664
chr17	63590841	63590939	16317562	0	+	0.377551	(0.36,0.39]	chr17	1323671	18	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	34	2	2.16717	2.2334199999999997	2.29967	0.0152504	0.0019325	0.0828908	0.0184661
chr18	9126830	9126907	16751054	0	+	0.428571	(0.42,0.455]	chr18	1381380	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFV2:RP11-21J18.1	ENSG00000178127.13:ENSG00000265257.5	ENST00000318388.11:ENST00000578850.1:ENST00000579126.5:ENST00000400033.1:ENST00000465096.5:ENST00000474740.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	16	69	2	1.99034	2.233275	2.47621	0.00161397	0.00103297	0.0169243	0.0114808
chr3	128069854	128069950	3725189	0	+	0.395833	(0.39,0.42]	chr3	318515	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC61A1	ENSG00000058262.10	ENST00000243253.8:ENST00000424880.2:ENST00000483956.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	38	2	1.98041	2.232985	2.48556	0.00554472	0.00384158	0.0405292	0.0320512
chr7	128865578	128865667	8522610	0	+	0.561798	(0.53,0.59]	chr7	650500	1	UTR3	UTR3:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	12	75	2	1.34395	2.2328900000000003	3.12183	0.0477987	1.21728e-5	0.1801	3.23744e-4
chr3	134477803	134477901	4465382	0	-	0.27551	[0,0.29]	chr3	371139	2	UTR3	UTR3:EXON_MRNA	ANAPC13	ENSG00000129055.13	ENST00000510994.5:ENST00000354910.10:ENST00000514612.5	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	1.84905	2.232665	2.61628	0.0241194	0.0101434	0.110734	0.0626311
chr1	200407614	200407714	1443680	0	-	0.38	(0.36,0.39]	chr1	144520	6	CDS	CDS:EXON_MRNA	ZNF281	ENSG00000162702.8	ENST00000294740.3:ENST00000367353.2:ENST00000367352.3	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.97546	2.2323399999999998	2.48922	0.0239316	0.0110399	0.109927	0.0652374
chr3	53230510	53230565	4189042	0	-	0.545455	(0.53,0.59]	chr3	353796	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000461139.5:ENST00000296289.10:ENST00000469678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	44	2	1.99466	2.23233	2.47	0.0089333	0.0049448	0.0567495	0.0367601
chr6	7289086	7289183	7586884	0	-	0.371134	(0.36,0.39]	chr6	578694	13	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	68	2	2.09786	2.23231	2.36676	0.00658605	1.18563e-4	0.0454205	0.00207539
chr17	68532337	68532437	16337437	0	+	0.32	(0.29,0.33]	chr17	1325397	20	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000588188.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	15	2	2.22218	2.23222	2.24226	0.0306054	0.023782	0.130226	0.109413
chr9	133363271	133363367	10880444	0	-	0.510417	(0.49,0.53]	chr9	825839	20	UTR3	UTR3:EXON_MRNA	SURF4	ENSG00000148248.14	ENST00000545297.5:ENST00000613129.4:ENST00000618229.4:ENST00000371989.8:ENST00000485435.6	protein_coding	protein_coding	protein_coding	protein_coding	8	41	2	1.56396	2.23219	2.90042	0.0388812	3.88511e-4	0.158355	0.00534839
chr16	81711173	81711271	15772101	0	+	0.55102	(0.53,0.59]	chr16	1255597	15	UTR3	UTR3:EXON_MRNA	CMIP	ENSG00000153815.17	ENST00000537098.8:ENST00000539778.6:ENST00000621537.4	protein_coding	protein_coding	protein_coding	protein_coding	11	64	2	1.40945	2.232125	3.0548	0.0385441	5.01853e-5	0.157058	0.00103096
chr21	8210294	8210393	18041120	0	+	0.717172	(0.59,1]	chr21	1530812	10	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	6839	64343	2	1.96109	2.23179	2.50249	1.37588e-4	4.68084e-6	0.00233472	1.62193e-4
chr12	57525630	57525725	12903119	0	+	0.642105	(0.59,1]	chr12	1005471	4	CDS	CDS:EXON_MRNA:INTRON	MBD6	ENSG00000166987.15	ENST00000355673.8:ENST00000552659.1	protein_coding	protein_coding	protein_coding	protein_coding	3	32	2	1.96394	2.2316700000000003	2.4994	0.0453144	0.0333573	0.174798	0.137922
chr7	103075272	103075372	8440701	0	+	0.79	(0.59,1]	chr7	644926	1	CDS_START	CDS_START:CDS:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323735.10:ENST00000306450.5:ENST00000323716.8:ENST00000434153.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	32	2	1.96394	2.2316700000000003	2.4994	0.0453144	0.0333573	0.174798	0.137922
chr1	11960706	11960767	45350	0	+	0.639344	(0.59,1]	chr1	5761	2	CDS	CDS:EXON_MRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	2.08167	2.23162	2.38157	0.00939499	0.00534794	0.0590912	0.0392783
chrX	48791109	48791209	18692988	0	+	0.61	(0.59,1]	chrX	1594392	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	7	70	2	2.08167	2.23162	2.38157	0.00939499	0.00534794	0.0590912	0.0392783
chr1	226365001	226365077	1533055	0	-	0.657895	(0.59,1]	chr1	153427	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1:ENST00000677815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	53	2	2.03921	2.23151	2.42381	0.0371471	0.00452614	0.151849	0.0346018
chr12	110720296	110720389	13539218	0	-	0.397849	(0.39,0.42]	chr12	1065103	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	43	2	1.8416	2.231455	2.62131	0.00609677	0.00442246	0.0439136	0.0339842
chr21	37202246	37202343	18115586	0	+	0.42268	(0.42,0.455]	chr21	1536145	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	29	2	2.1201	2.2310049999999997	2.34191	0.0159091	0.00744913	0.0854674	0.0492835
chr1	32196989	32197088	127260	0	+	0.474747	(0.455,0.49]	chr1	15695	19	UTR3	UTR3:EXON_MRNA	TXLNA	ENSG00000084652.16	ENST00000373610.8:ENST00000373609.1	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.4646	2.23065	2.9967	0.0410791	0.00650423	0.15538	0.0454205
chr3	179623919	179623979	3928914	0	+	0.466667	(0.455,0.49]	chr3	330264	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NDUFB5:RP11-15L13.5	ENSG00000136521.13:ENSG00000288698.1	ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000482604.5:ENST00000480374.1:ENST00000473500.5:ENST00000471112.1:ENST00000476587.1:ENST00000493716.1:ENST00000680692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	27	2	1.4646	2.23065	2.9967	0.0410791	0.00650423	0.15538	0.0454205
chr18	77973365	77973464	17184259	0	-	0.353535	(0.33,0.36]	chr18	1410247	1	INTRON	INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000666771.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662109.1:ENST00000662085.1:ENST00000583106.1:ENST00000582805.1	lncRNA	lncRNA	lncRNA	lncRNA	7	26	2	2.0111	2.23048	2.44986	0.0124964	0.00563343	0.071421	0.0422191
chr20	3930685	3930784	17883231	0	-	0.474747	(0.455,0.49]	chr20	1513717	35	UTR3	UTR3:EXON_MRNA	RNF24	ENSG00000101236.17	ENST00000336095.10:ENST00000358395.11	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.92777	2.230315	2.53286	0.0286531	0.0282409	0.128685	0.124386
chr2	74893068	74893165	1893450	0	+	0.340206	(0.33,0.36]	chr2	179646	23	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	10	35	2	2.19355	2.23027	2.26699	0.00427416	0.00302788	0.0332637	0.026885
chr1	173477397	173477492	548509	0	+	0.610526	(0.59,1]	chr1	58279	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	PRDX6	ENSG00000117592.9	ENST00000460950.1:ENST00000340385.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	257	2	1.80338	2.230095	2.65681	0.00386051	3.04e-5	0.0321963	6.82367e-4
chr16	87383970	87384067	16070303	0	-	0.515464	(0.49,0.53]	chr16	1290986	3	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000618298.6:ENST00000569412.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	286	1323	2	2.14983	2.229505	2.30918	7.55391e-6	1.44857e-6	2.18445e-4	6.00688e-5
chr5	34909257	34909356	6530625	0	-	0.393939	(0.39,0.42]	chr5	505503	1	CDS	CDS:UTR3:EXON_MRNA	RAD1	ENSG00000113456.19	ENST00000382038.7:ENST00000341754.8:ENST00000325577.8:ENST00000513914.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	1.75252	2.229215	2.70591	0.0297286	0.0185716	0.130016	0.0932453
chr11	60061160	60061260	11961611	0	+	0.57	(0.53,0.59]	chr11	915656	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000528298.5:ENST00000278865.8:ENST00000525686.1:ENST00000526199.1:ENST00000534744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	31	2	2.16037	2.22913	2.29789	0.0254312	0.00674768	0.117089	0.0468196
chr19	2246881	2246951	17195912	0	+	0.571429	(0.53,0.59]	chr19	1412811	1	CDS	CDS:EXON_MRNA	SF3A2	ENSG00000104897.10	ENST00000221494.10:ENST00000592314.5:ENST00000587637.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	50	2	1.70379	2.228995	2.7542	0.0330081	3.14256e-4	0.138711	0.00452711
chr19	10393098	10393157	17459907	0	-	0.542373	(0.53,0.59]	chr19	1460939	1	CDS	CDS:EXON_MRNA	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589625.5:ENST00000589331.1:ENST00000590632.1:ENST00000589629.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	26	2	1.90953	2.2289849999999998	2.54844	0.0517711	0.00663226	0.193577	0.0461575
chr3	195781568	195781668	4661082	0	-	0.58	(0.53,0.59]	chr3	385270	29	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	26	2	1.90953	2.2289849999999998	2.54844	0.0517711	0.00663226	0.193577	0.0461575
chr17	30735032	30735097	16188804	0	+	0.353846	(0.33,0.36]	chr17	1306781	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	SUZ12P1	ENSG00000264538.6	ENST00000578070.5:ENST00000579526.5:ENST00000497969.6:ENST00000578195.6:ENST00000582557.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	20	2	2.16995	2.228935	2.28792	0.0239159	0.0124739	0.112531	0.0713206
chr1	10149183	10149282	37548	0	+	0.333333	(0.33,0.36]	chr1	4396	1	CDS	CDS:EXON_MRNA	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.93784	2.228355	2.51887	0.0358636	0.0278501	0.147298	0.123353
chr8	97724869	97724969	9506388	0	+	0.34	(0.33,0.36]	chr8	722727	3	UTR3	UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	2.13965	2.22831	2.31697	0.0297101	0.00966431	0.129986	0.0606263
chr15	52550835	52550935	15287496	0	-	0.25	[0,0.29]	chr15	1206631	39	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	18	59	2	1.83552	2.227955	2.62039	0.00899051	4.16653e-5	0.0570835	8.85765e-4
chr19	40759520	40759610	17330888	0	+	0.733333	(0.59,1]	chr19	1436146	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1:ENST00000598452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	2.14957	2.2279	2.30623	0.0170607	0.0126053	0.0896731	0.0719957
chr9	131174142	131174230	10496117	0	+	0.625	(0.59,1]	chr9	793300	2	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	87	2	2.15659	2.227725	2.29886	0.00759671	0.00285892	0.0505607	0.0245889
chr2	241229307	241229405	3250546	0	-	0.510204	(0.49,0.53]	chr2	286983	22	UTR3	UTR3:EXON_MRNA	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000487169.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	30	2	2.07447	2.2277199999999997	2.38097	0.0425419	0.0053794	0.167547	0.0395061
chr16	84745107	84745202	15790683	0	+	0.589474	(0.53,0.59]	chr16	1256672	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	41	2	2.01641	2.227465	2.43852	0.0108917	0.00373745	0.0645168	0.0303359
chr2	15607174	15607243	1650759	0	+	0.463768	(0.455,0.49]	chr2	162931	1	CDS	CDS:UTR3:EXON_MRNA	DDX1	ENSG00000079785.16	ENST00000381341.7:ENST00000677302.1:ENST00000434671.2:ENST00000676759.1:ENST00000478695.2:ENST00000678786.1:ENST00000678536.1:ENST00000679227.1:ENST00000678755.1:ENST00000676937.1:ENST00000676916.1:ENST00000617198.5:ENST00000233084.8:ENST00000677437.1:ENST00000678137.1:ENST00000678594.1:ENST00000459706.2:ENST00000677355.1:ENST00000470674.2:ENST00000676635.1:ENST00000677552.1:ENST00000621973.2:ENST00000678391.1:ENST00000677649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	34	2	1.80094	2.22723	2.65352	0.0265942	0.00143499	0.120205	0.0147046
chr1	154157151	154157248	1302310	0	-	0.525773	(0.49,0.53]	chr1	131065	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	43	2	1.72711	2.227115	2.72712	0.0162279	9.78408e-4	0.0864269	0.0109424
chr1	143955986	143956086	1261712	0	-	0.33	(0.29,0.33]	chr1	123681	8	UTR3	UTR3:EXON_MRNA	FAM72C	ENSG00000263513.6	ENST00000584486.6:ENST00000369175.4	protein_coding	protein_coding	protein_coding	protein_coding	13	43	2	2.12082	2.22677	2.33272	0.00296866	0.00148642	0.0264052	0.0151359
chr6	159681994	159682094	8048225	0	-	0.42	(0.39,0.42]	chr6	615183	131	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	31	2	1.50406	2.226615	2.94917	0.0413581	0.00121791	0.164391	0.0130188
chr19	49799326	49799410	17372784	0	+	0.666667	(0.59,1]	chr19	1443714	1	CDS	CDS:UTR3:EXON_MRNA	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.67735	2.225765	2.77418	0.0534288	0.0160729	0.184995	0.0860154
chr5	140658938	140659013	6255632	0	+	0.493333	(0.49,0.53]	chr5	487822	1	CDS	CDS:EXON_MRNA	IK	ENSG00000113141.18	ENST00000417647.7:ENST00000610522.4:ENST00000515015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	36	2	1.85272	2.225765	2.59881	0.0211739	0.00184545	0.101864	0.0178046
chr3	42784876	42784974	4142180	0	-	0.418367	(0.39,0.42]	chr3	346309	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP4-613B23.5:HIGD1A	ENSG00000280571.2:ENSG00000181061.14	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6:ENST00000470543.1:ENST00000430190.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	56	2	1.57821	2.22574	2.87327	0.020538	6.4732e-5	0.0992467	0.00126536
chr1	71069275	71069362	1086899	0	-	0.494253	(0.49,0.53]	chr1	110823	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZRANB2	ENSG00000132485.14	ENST00000370920.8:ENST00000254821.10:ENST00000487510.1:ENST00000611683.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	47	2	1.35761	2.225485	3.09336	0.0469087	1.28432e-4	0.171977	0.00241206
chr10	102163117	102163211	11226691	0	+	0.329787	(0.29,0.33]	chr10	854877	10	UTR3	UTR3:EXON_MRNA:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	20	2	1.83055	2.2254	2.62025	0.0348758	0.00573581	0.144642	0.0417422
chr2	24815582	24815669	1682573	0	+	0.436782	(0.42,0.455]	chr2	164486	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CENPO	ENSG00000138092.11	ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000260662.2:ENST00000498362.1:ENST00000464156.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	21	2	1.63927	2.22532	2.81137	0.0455517	0.0120386	0.175554	0.0700876
chr1	214336870	214336957	710020	0	+	0.356322	(0.33,0.36]	chr1	71834	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SMYD2	ENSG00000143499.14	ENST00000491455.5:ENST00000471645.5:ENST00000366957.10:ENST00000460580.5:ENST00000416415.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	16	2	1.97842	2.225025	2.47163	0.0469469	0.0129725	0.171977	0.0724783
chr1	47377841	47377941	182643	0	+	0.3	(0.29,0.33]	chr1	23843	12	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.99403	2.22497	2.45591	0.0202925	0.00406506	0.098158	0.032143
chr2	113959135	113959234	2007138	0	+	0.343434	(0.33,0.36]	chr2	190801	18	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.82394	2.22484	2.62574	0.0494504	0.00176861	0.18557	0.0172426
chr1	220018994	220019079	1511195	0	-	0.470588	(0.455,0.49]	chr1	151074	1	CDS	CDS:UTR3:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	54	2	1.83409	2.224835	2.61558	0.00366014	0.00184897	0.0299832	0.0185736
chr5	69209799	69209892	6019596	0	+	0.322581	(0.29,0.33]	chr5	471312	1	UTR3	UTR3:EXON_MRNA	CENPH	ENSG00000153044.10	ENST00000515001.5:ENST00000283006.7:ENST00000502689.1:ENST00000510742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	44	2	1.89656	2.22478	2.553	0.00981789	2.8236e-4	0.06149	0.0041606
chr2	32515281	32515379	1714033	0	+	0.408163	(0.39,0.42]	chr2	168274	4	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.149	2.224775	2.30055	0.0149155	0.0070645	0.0812412	0.0477419
chr12	123261256	123261352	13594889	0	-	0.375	(0.36,0.39]	chr12	1070943	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDK2AP1	ENSG00000111328.7	ENST00000652466.1:ENST00000541002.7:ENST00000618072.4:ENST00000261692.7:ENST00000535979.5:ENST00000538446.5:ENST00000542174.5:ENST00000544658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	33	2	1.34438	2.22472	3.10506	0.043029	7.38785e-4	0.16111	0.00924579
chr6	52264587	52264675	7736586	0	-	0.5	(0.49,0.53]	chr6	593678	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MCM3	ENSG00000112118.20	ENST00000616552.4:ENST00000229854.12:ENST00000596288.7:ENST00000419835.8:ENST00000421471.1	protein_coding	protein_coding	protein_coding	protein_coding	9	44	2	2.06004	2.2246949999999996	2.38935	0.00488689	0.00373365	0.0376157	0.0303255
chr6	10730666	10730758	7048621	0	+	0.315217	(0.29,0.33]	chr6	539767	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM14C	ENSG00000111843.14	ENST00000541412.5:ENST00000229563.6:ENST00000466421.5:ENST00000467415.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	42	2	2.01933	2.2246699999999997	2.43001	0.0025696	0.00181907	0.0229363	0.0183913
chr11	6483697	6483795	11781847	0	+	0.326531	(0.29,0.33]	chr11	901762	16	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2010I16.2:TIMM10B	ENSG00000283977.1:ENSG00000132286.12	ENST00000639224.1:ENST00000640959.1:ENST00000254616.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	30	2	1.51736	2.2246300000000003	2.9319	0.02428	0.00145571	0.114157	0.0148357
chr5	151804326	151804405	6299767	0	+	0.253165	[0,0.29]	chr5	491954	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000678369.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000679193.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	36	2	2.17693	2.224625	2.27232	0.00296574	0.00246711	0.0263871	0.0222554
chr1	631169	631265	480	0	+	0.510417	(0.49,0.53]	chr1	106	2	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	39	180	2	2.0804	2.224555	2.36871	1.30804e-4	3.94354e-5	0.00243846	8.50327e-4
chr7	100099022	100099076	8949691	0	-	0.592593	(0.59,1]	chr7	683550	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	59	2	2.00297	2.2244200000000003	2.44587	0.0125191	0.0105307	0.0713905	0.0644466
chr5	154875922	154876018	6315265	0	+	0.375	(0.36,0.39]	chr5	492585	6	UTR3	UTR3:EXON_MRNA	CNOT8	ENSG00000155508.14	ENST00000517876.5:ENST00000403027.6:ENST00000285896.11	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.81362	2.224415	2.63521	0.016627	0.00633242	0.0880236	0.0446708
chr1	55063876	55063974	203852	0	+	0.520408	(0.49,0.53]	chr1	26182	4	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	2.18239	2.2244	2.26641	0.024394	0.0190546	0.111797	0.093872
chr17	35682759	35682824	16207085	0	+	0.507692	(0.49,0.53]	chr17	1309125	2	CDS	CDS:UTR3:EXON_MRNA	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	28	2	1.99044	2.2242100000000002	2.45798	0.0435903	0.00353238	0.170594	0.029076
chr22	28794731	28794819	18464263	0	-	0.477273	(0.455,0.49]	chr22	1574926	3	UTR3	UTR3:EXON_MRNA	XBP1	ENSG00000100219.16	ENST00000216037.10:ENST00000403532.7:ENST00000484256.1:ENST00000611155.4:ENST00000405219.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	38	2	2.09123	2.224195	2.35716	0.00905243	0.00260884	0.0574173	0.0230635
chr6	31736261	31736300	7662170	0	-	0.487179	(0.455,0.49]	chr6	585146	1	CDS_START	CDS_START:CDS:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	2.17632	2.22392	2.27152	0.00786769	0.00634339	0.0514287	0.0446708
chr19	38728995	38729074	17323756	0	+	0.594937	(0.59,1]	chr19	1434378	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000497637.5:ENST00000477174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	60	2	2.20362	2.223795	2.24397	0.0206682	0.00565413	0.0997234	0.0412424
chr19	44901027	44901104	17349610	0	+	0.558442	(0.53,0.59]	chr19	1439217	1	CDS	CDS:EXON_MRNA	TOMM40	ENSG00000130204.13	ENST00000252487.9:ENST00000405636.6:ENST00000592434.5:ENST00000426677.7:ENST00000592041.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	23	2	1.65775	2.223775	2.7898	0.0573191	0.0128364	0.196623	0.0719798
chr22	29296303	29296368	18336694	0	+	0.569231	(0.53,0.59]	chr22	1558203	2	CDS	CDS:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3:ENST00000610553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	23	2	1.65775	2.223775	2.7898	0.0573191	0.0128364	0.196623	0.0719798
chr3	23920294	23920393	3358570	0	+	0.434343	(0.42,0.455]	chr3	294139	9	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	37	156	2	2.01169	2.22375	2.43581	1.71204e-4	7.52898e-5	0.00278487	0.00158178
chr1	205713416	205713515	1461989	0	-	0.393939	(0.39,0.42]	chr1	147460	7	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	17	69	2	2.01497	2.223745	2.43252	0.00139142	3.83902e-4	0.0143864	0.00574033
chr4	143349742	143349836	5694579	0	-	0.585106	(0.53,0.59]	chr4	451354	6	EXON_PSEUDO	EXON_PSEUDO	RP11-364L4.1	ENSG00000228981.3	ENST00000475555.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	28	2	1.93217	2.223585	2.515	0.0292633	0.0149802	0.129773	0.0814081
chr11	118397528	118397627	12157865	0	+	0.424242	(0.42,0.455]	chr11	936937	12	UTR3	UTR3:EXON_MRNA	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.71996	2.22341	2.72686	0.0542346	0.00330337	0.199653	0.027613
chr5	96773904	96774001	6117352	0	+	0.43299	(0.42,0.455]	chr5	478607	14	UTR3	UTR3:EXON_MRNA:INTRON	CAST	ENSG00000153113.24	ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000674984.1:ENST00000675663.1:ENST00000675267.1:ENST00000675266.1:ENST00000395813.5:ENST00000309190.9:ENST00000674587.1:ENST00000675033.1:ENST00000675479.1:ENST00000437034.6:ENST00000325674.11:ENST00000675185.1:ENST00000510098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.71996	2.22341	2.72686	0.0542346	0.00330337	0.199653	0.027613
chr12	6965505	6965594	13188852	0	-	0.573034	(0.53,0.59]	chr12	1032781	3	UTR3	UTR3:EXON_MRNA	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000537646.5:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	35	2	2.0728	2.223395	2.37399	0.0126178	0.0086901	0.0717599	0.0559355
chr12	53479728	53479824	12886742	0	+	0.28125	[0,0.29]	chr12	1002482	4	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552819.5:ENST00000455667.7:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	99	2	1.67205	2.22322	2.77439	0.00937128	1.62101e-6	0.0589598	5.9966e-5
chr16	85675708	85675807	15798110	0	+	0.424242	(0.42,0.455]	chr16	1257094	33	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	50	2	1.52129	2.22321	2.92513	0.0168995	3.39829e-4	0.0890655	0.00479167
chr10	43387402	43387498	11461767	0	-	0.53125	(0.53,0.59]	chr10	873955	8	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	32	175	2	2.10619	2.22297	2.33975	2.66731e-4	5.38637e-5	0.00430547	0.00109422
chr15	43793773	43793872	14896753	0	+	0.616162	(0.59,1]	chr15	1171350	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SERF2	ENSG00000140264.21	ENST00000381359.5:ENST00000630046.2:ENST00000249786.9:ENST00000409646.5:ENST00000409960.6:ENST00000486144.1:ENST00000445816.5:ENST00000409291.5:ENST00000339624.9:ENST00000409617.6:ENST00000448830.2:ENST00000403425.5:ENST00000402131.5:ENST00000430901.1:ENST00000409614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	236	2	2.12161	2.22293	2.32425	6.25389e-4	3.68538e-4	0.00777933	0.00553438
chr12	103933855	103933955	13056767	0	+	0.33	(0.29,0.33]	chr12	1017310	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	22	2	1.71387	2.2228250000000003	2.73178	0.0355849	0.00360855	0.147262	0.0296421
chr11	117167699	117167797	12154342	0	+	0.418367	(0.39,0.42]	chr11	936189	1	UTR3	UTR3:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	26	2	1.66154	2.2227699999999997	2.784	0.0452475	0.00261393	0.174743	0.0230705
chr16	74623537	74623635	16032604	0	-	0.459184	(0.455,0.49]	chr16	1287407	23	UTR3	UTR3:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.68956	2.222715	2.75587	0.0381365	0.00293507	0.155455	0.025146
chr10	73783187	73783280	11115996	0	+	0.387097	(0.36,0.39]	chr10	845964	1	UTR3	UTR3:EXON_MRNA	CHCHD1	ENSG00000172586.8	ENST00000372837.3:ENST00000372833.6	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	2.05966	2.22265	2.38564	0.0476159	0.0366015	0.17993	0.145024
chr17	48622899	48622999	16578572	0	-	0.44	(0.42,0.455]	chr17	1361938	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	1.69266	2.22248	2.7523	0.0354788	0.0153283	0.143019	0.0828908
chr22	19505421	19505481	18295626	0	+	0.516667	(0.49,0.53]	chr22	1552777	2	CDS	CDS:UTR3:EXON_MRNA	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000437685.6:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000471470.1:ENST00000671972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	29	2	1.65491	2.222265	2.78962	0.0213636	0.0129044	0.102709	0.0725185
chr1	55039837	55039937	203591	0	+	0.74	(0.59,1]	chr1	26108	1	CDS_START	CDS_START:CDS:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000673726.1:ENST00000302118.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	71	2	2.14957	2.222225	2.29488	0.0126053	0.00407435	0.0719957	0.0324137
chr12	93399677	93399777	13019150	0	+	0.37	(0.36,0.39]	chr12	1013446	4	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000547014.5	protein_coding	protein_coding	protein_coding	protein_coding	26	96	2	2.02441	2.22218	2.41995	4.31231e-4	1.41908e-4	0.00582548	0.00260327
chrX	48791843	48791872	18692997	0	+	0.448276	(0.42,0.455]	chrX	1594397	1	CDS	CDS:UTR5:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	2.11785	2.222155	2.32646	0.0154862	0.00624136	0.0836691	0.0443844
chr12	95002738	95002821	13478156	0	-	0.361446	(0.36,0.39]	chr12	1059769	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000547986.5:ENST00000546788.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	33	2	2.11751	2.222145	2.32678	0.0193538	0.00296338	0.0943643	0.0253798
chr1	17033059	17033145	873142	0	-	0.406977	(0.39,0.42]	chr1	89461	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHB	ENSG00000117118.10	ENST00000375499.8:ENST00000485515.5:ENST00000491274.5:ENST00000475506.1:ENST00000463045.2:ENST00000466613.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	19	2	2.18155	2.22213	2.2627100000000002	0.0283931	0.0192666	0.127654	0.0966228
chr15	52550037	52550137	15287488	0	-	0.44	(0.42,0.455]	chr15	1206631	31	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5	protein_coding	protein_coding	protein_coding	protein_coding	11	48	2	1.77028	2.2220050000000002	2.67373	0.0100387	5.59707e-4	0.0623355	0.00771312
chr7	158648845	158648944	9158676	0	-	0.454545	(0.42,0.455]	chr7	699518	19	INTRON	INTRON	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	48	2	1.77028	2.2220050000000002	2.67373	0.0100387	5.59707e-4	0.0623355	0.00771312
chr4	99881795	99881894	5550919	0	-	0.343434	(0.33,0.36]	chr4	443610	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LAMTOR3	ENSG00000109270.13	ENST00000499666.7:ENST00000226522.8:ENST00000515100.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	23	2	2.17058	2.221965	2.27335	0.01664	0.00837768	0.0878065	0.0541213
chrX	48791872	48791972	18692998	0	+	0.66	(0.59,1]	chrX	1594398	1	CDS_START	CDS_START:CDS:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	7	74	2	1.8502	2.22192	2.59364	0.0334531	0.0010223	0.140296	0.0113689
chr17	76563214	76563311	16359181	0	+	0.360825	(0.36,0.39]	chr17	1328581	2	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000586942.6:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	15	70	2	1.38287	2.22164	3.06041	0.0446017	3.77931e-6	0.172386	1.22746e-4
chr5	95656703	95656801	6107378	0	+	0.265306	[0,0.29]	chr5	478161	5	UTR3	UTR3:EXON_MRNA	RFESD	ENSG00000175449.14	ENST00000380005.9:ENST00000311364.8:ENST00000458310.1	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	1.93716	2.22147	2.50578	0.0548436	0.00151355	0.189511	0.0161238
chr5	154816922	154817020	6315040	0	+	0.510204	(0.49,0.53]	chr5	492515	30	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.65324	2.2214300000000002	2.78962	0.0407792	0.0129044	0.163285	0.0725185
chr1	44757555	44757646	173961	0	+	0.461538	(0.455,0.49]	chr1	22359	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	87	2	1.47423	2.221415	2.9686	0.0418992	2.65202e-6	0.166188	9.12018e-5
chr16	15866004	15866100	15867185	0	-	0.302083	(0.29,0.33]	chr16	1268253	4	UTR3	UTR3:EXON_MRNA	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.52211	2.22138	2.92065	0.0241033	0.0117842	0.110691	0.0686664
chr1	109355366	109355417	1219903	0	-	0.431373	(0.42,0.455]	chr1	119026	1	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.03532	2.22098	2.40664	0.040947	0.00445101	0.163285	0.0340751
chr16	4803492	4803589	15838343	0	-	0.42268	(0.42,0.455]	chr16	1264802	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000587936.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	2.03532	2.22098	2.40664	0.040947	0.00445101	0.163285	0.0340751
chr5	139627377	139627473	6250574	0	+	0.447917	(0.42,0.455]	chr5	487112	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBE2D2	ENSG00000131508.16	ENST00000398733.8:ENST00000398734.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	2.03532	2.22098	2.40664	0.040947	0.00445101	0.163285	0.0340751
chr8	69690238	69690338	9876378	0	-	0.39	(0.36,0.39]	chr8	746644	75	INTRON	INTRON	SLCO5A1	ENSG00000137571.11	ENST00000260126.9:ENST00000524945.5:ENST00000526750.1:ENST00000530307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1164	4115	2	2.02312	2.2207049999999997	2.41829	1.08055e-5	1.38278e-7	2.93281e-4	8.27105e-6
chr17	81843347	81843442	16709487	0	-	0.705263	(0.59,1]	chr17	1377674	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	P4HB	ENSG00000185624.16	ENST00000680083.1:ENST00000680416.1:ENST00000575069.6:ENST00000681030.1:ENST00000680884.1:ENST00000681161.1:ENST00000681515.1:ENST00000679470.1:ENST00000571617.2:ENST00000679688.1:ENST00000680226.1:ENST00000571507.6:ENST00000680400.1:ENST00000574914.2:ENST00000331483.9:ENST00000680914.1:ENST00000680593.1:ENST00000681420.1:ENST00000681693.1:ENST00000576390.6:ENST00000681835.1:ENST00000681954.1:ENST00000681259.1:ENST00000681566.1:ENST00000680076.1:ENST00000680105.1:ENST00000680368.1:ENST00000474712.2:ENST00000473021.2:ENST00000681872.1:ENST00000484286.2:ENST00000466567.3:ENST00000679396.1:ENST00000415593.6:ENST00000679889.1:ENST00000681571.1:ENST00000680719.1:ENST00000680191.1:ENST00000680547.1:ENST00000680799.1:ENST00000680208.1:ENST00000679439.1:ENST00000439918.7:ENST00000472244.6:ENST00000681031.1:ENST00000680846.1:ENST00000681068.1:ENST00000477607.7:ENST00000679366.1:ENST00000681020.1:ENST00000681614.1:ENST00000681485.1:ENST00000679628.1:ENST00000476482.2:ENST00000679455.1:ENST00000680259.1:ENST00000680559.1:ENST00000680909.1:ENST00000681760.1:ENST00000681933.1:ENST00000570907.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	81	2	1.87624	2.220555	2.56487	0.0194045	0.00117129	0.0944333	0.0127267
chr11	5340607	5340701	12241498	0	-	0.382979	(0.36,0.39]	chr11	946157	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	39	2	2.05973	2.220425	2.38112	0.0039268	0.0031815	0.031494	0.0279343
chr7	42917573	42917673	8791575	0	-	0.4	(0.39,0.42]	chr7	670201	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RP11-111K18.1:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	51	2	1.87119	2.2202450000000002	2.5693	0.0373134	1.34921e-4	0.152293	0.00230697
chr1	1049718	1049795	2377	0	+	0.727273	(0.59,1]	chr1	547	3	CDS	CDS:EXON_MRNA	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.74555	2.22016	2.69477	0.0444308	0.020208	0.165174	0.0978331
chr19	49086514	49086561	17368434	0	+	0.446809	(0.42,0.455]	chr19	1442381	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598984.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000597936.5:ENST00000595231.5:ENST00000601411.1:ENST00000599687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	36	2	1.75469	2.2200699999999998	2.68545	0.0198622	0.00135767	0.0984041	0.0146849
chr11	86000710	86000779	12526154	0	-	0.449275	(0.42,0.455]	chr11	972216	2	CDS	CDS:UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000356360.9:ENST00000529016.5:ENST00000530542.1:ENST00000534412.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	98	2	2.20093	2.2197899999999997	2.23865	6.65482e-4	1.75375e-4	0.00867533	0.00284529
chr17	75321742	75321827	16683222	0	-	0.505882	(0.49,0.53]	chr17	1373179	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1:ENST00000648046.1:ENST00000578961.5:ENST00000462266.1:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	17	2	2.13501	2.219705	2.3044	0.0509448	0.0287874	0.181793	0.128869
chr8	23030758	23030815	9755898	0	-	0.508772	(0.49,0.53]	chr8	737537	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000518531.5:ENST00000519910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	17	2	2.13501	2.219705	2.3044	0.0509448	0.0287874	0.181793	0.128869
chr8	100918805	100918904	9976204	0	-	0.292929	(0.29,0.33]	chr8	752728	24	UTR3	UTR3:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7	protein_coding	protein_coding	protein_coding	protein_coding	27	87	2	2.0956	2.21956	2.34352	7.79868e-4	6.89208e-5	0.00973078	0.00133392
chr1	160358271	160358368	496815	0	+	0.536082	(0.53,0.59]	chr1	53515	1	UTR3	UTR3:EXON_MRNA	NCSTN	ENSG00000162736.17	ENST00000368063.6:ENST00000294785.10:ENST00000469159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	39	2	1.90953	2.219045	2.52856	0.0517711	0.00107225	0.193577	0.0118238
chr19	1555141	1555235	17419023	0	-	0.446809	(0.42,0.455]	chr19	1452568	6	UTR3	UTR3:EXON_MRNA	MEX3D	ENSG00000181588.17	ENST00000402693.5:ENST00000605173.2	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.96397	2.21888	2.47379	0.0138503	0.00996858	0.0759947	0.0621728
chr22	38494885	38494965	18509716	0	-	0.4375	(0.42,0.455]	chr22	1579986	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000497196.5:ENST00000477112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	28	2	1.96397	2.21888	2.47379	0.0138503	0.00996858	0.0759947	0.0621728
chr1	37509454	37509542	946962	0	-	0.454545	(0.42,0.455]	chr1	99466	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MEAF6	ENSG00000163875.16	ENST00000296214.10:ENST00000373075.6:ENST00000373074.5:ENST00000475828.5:ENST00000487788.5:ENST00000373073.8:ENST00000487792.5:ENST00000448519.2:ENST00000485039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	2.07474	2.218605	2.36247	0.0462889	0.0338882	0.176878	0.139841
chr2	182751721	182751785	2249242	0	+	0.453125	(0.42,0.455]	chr2	205045	2	CDS	CDS:UTR3:EXON_MRNA	DNAJC10	ENSG00000077232.19	ENST00000679526.1:ENST00000680258.1:ENST00000679491.1:ENST00000680667.1:ENST00000264065.12:ENST00000616986.5:ENST00000680480.1:ENST00000681873.1:ENST00000680060.1:ENST00000681139.1:ENST00000681146.1:ENST00000650903.2:ENST00000680484.1:ENST00000491074.6:ENST00000679884.1:ENST00000418559.6:ENST00000680648.1:ENST00000681122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.07474	2.218605	2.36247	0.0462889	0.0338882	0.176878	0.139841
chr20	508605	508660	17871727	0	-	0.454545	(0.42,0.455]	chr20	1512018	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.07474	2.218605	2.36247	0.0462889	0.0338882	0.176878	0.139841
chr6	43007413	43007506	7154463	0	+	0.430108	(0.42,0.455]	chr6	552344	1	CDS	CDS:UTR3:EXON_MRNA	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000461010.5:ENST00000470467.5:ENST00000676174.1:ENST00000467447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.07474	2.218605	2.36247	0.0462889	0.0338882	0.176878	0.139841
chr11	65430498	65430598	11984648	0	+	0.33	(0.29,0.33]	chr11	920390	65	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	12	38	2	2.08499	2.2184	2.35181	0.00414169	0.00160522	0.0325842	0.0160219
chr3	47586542	47586640	4161746	0	-	0.326531	(0.29,0.33]	chr3	348302	14	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	13	40	2	1.5621	2.2183450000000002	2.87459	0.0240763	1.72733e-4	0.113253	0.00280648
chr14	102016418	102016489	14495509	0	+	0.492958	(0.49,0.53]	chr14	1133118	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000645114.2:ENST00000643764.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	32	2	2.13501	2.2182399999999998	2.30147	0.0287874	0.0033367	0.128869	0.0278556
chr19	1258749	1258847	17192165	0	+	0.285714	[0,0.29]	chr19	1411881	16	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1	protein_coding	protein_coding	protein_coding	protein_coding	10	28	2	1.52343	2.21816	2.91289	0.0301267	9.07288e-4	0.130016	0.0110102
chr1	225790375	225790468	737937	0	+	0.27957	[0,0.29]	chr1	74393	12	UTR3	UTR3:EXON_MRNA	SRP9	ENSG00000143742.14	ENST00000304786.12:ENST00000366839.8:ENST00000651761.1	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.15488	2.2179599999999997	2.28104	0.0436536	0.0202028	0.170594	0.0984041
chr13	25341724	25341824	13647974	0	+	0.24	[0,0.29]	chr13	1075929	17	UTR3	UTR3:EXON_MRNA:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	14	2	2.15488	2.2179599999999997	2.28104	0.0436536	0.0202028	0.170594	0.0984041
chr6	34287156	34287256	7672473	0	-	0.28	[0,0.29]	chr6	588026	76	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.15488	2.2179599999999997	2.28104	0.0436536	0.0202028	0.170594	0.0984041
chr6	7251785	7251882	7031394	0	+	0.360825	(0.36,0.39]	chr6	538755	30	UTR3	UTR3:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379938.7	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.66836	2.217925	2.76749	0.0474647	0.00287858	0.17993	0.0247002
chr11	85958848	85958946	12525718	0	-	0.367347	(0.36,0.39]	chr11	972155	18	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	50	192	2	1.87112	2.217675	2.56423	4.99342e-4	2.33981e-6	0.00699807	8.22653e-5
chrX	72275724	72275824	19107991	0	-	0.43	(0.42,0.455]	chrX	1625646	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS4X	ENSG00000198034.11	ENST00000316084.10:ENST00000486733.2:ENST00000373626.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	2.20599	2.21766	2.22933	0.0227797	0.0102262	0.105293	0.062872
chr1	30992389	30992479	916904	0	-	0.466667	(0.455,0.49]	chr1	96059	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526215.5:ENST00000525948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.96875	2.217495	2.46624	0.0480352	0.0094145	0.180552	0.0592633
chr17	16194469	16194569	16461116	0	-	0.48	(0.455,0.49]	chr17	1343934	1	CDS_START	CDS_START:CDS:EXON_MRNA	NCOR1	ENSG00000141027.21	ENST00000268712.8:ENST00000395857.7:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000579974.1:ENST00000430577.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.96875	2.217495	2.46624	0.0480352	0.0094145	0.180552	0.0592633
chr17	28749968	28750066	16177581	0	+	0.479592	(0.455,0.49]	chr17	1305616	1	UTR3	UTR3:EXON_MRNA	TRAF4	ENSG00000076604.15	ENST00000262395.10:ENST00000444415.7	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.96875	2.217495	2.46624	0.0480352	0.0094145	0.180552	0.0592633
chr6	31829392	31829488	7116701	0	+	0.604167	(0.59,1]	chr6	546209	15	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	16	146	2	1.33254	2.21727	3.102	0.0320768	3.25562e-5	0.135438	7.20475e-4
chr1	32331527	32331582	128510	0	+	0.418182	(0.39,0.42]	chr1	15941	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDAC1	ENSG00000116478.12	ENST00000373548.8:ENST00000490081.5:ENST00000482310.5:ENST00000476391.5:ENST00000471488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	28	2	2.18155	2.217	2.25245	0.0283931	0.00427758	0.127654	0.0332717
chr10	28620287	28620385	10990638	0	+	0.336735	(0.33,0.36]	chr10	835918	8	UTR3	UTR3:EXON_MRNA	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000679398.1:ENST00000442148.6:ENST00000414108.6:ENST00000679428.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	41	2	1.68466	2.216885	2.74911	0.0351252	1.52901e-4	0.145575	0.00254973
chr4	77055226	77055303	5479243	0	-	0.480519	(0.455,0.49]	chr4	439262	2	CDS	CDS:EXON_MRNA:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000515468.1:ENST00000506614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	105	2	2.11622	2.216875	2.31753	3.12664e-4	2.74446e-4	0.00482683	0.00406677
chr17	67945683	67945774	16333327	0	+	0.494505	(0.49,0.53]	chr17	1325046	4	CDS	CDS:EXON_MRNA	BPTF	ENSG00000171634.18	ENST00000306378.11:ENST00000544778.6:ENST00000321892.8:ENST00000342579.8:ENST00000644067.1:ENST00000424123.7:ENST00000580465.5	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.9035	2.216805	2.53011	0.0295204	0.00254862	0.129773	0.0227869
chr11	5342404	5342494	12241517	0	-	0.333333	(0.33,0.36]	chr11	946160	7	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	19	2	1.91461	2.21674	2.51887	0.0358636	0.0179419	0.147298	0.0939469
chr9	131197215	131197315	10496359	0	+	0.55	(0.53,0.59]	chr9	793351	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000531929.5:ENST00000651334.1:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	118	2	1.96852	2.21652	2.46452	0.00177738	6.43558e-5	0.018161	0.00126174
chr7	131353457	131353557	8534110	0	+	0.35	(0.33,0.36]	chr7	651602	251	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000416992.6:ENST00000429546.5:ENST00000446815.5:ENST00000494286.5:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	32	2	1.82006	2.216445	2.61283	0.0323353	7.60348e-4	0.135977	0.00908558
chrX	155239341	155239441	18920373	0	+	0.32	(0.29,0.33]	chrX	1612534	6	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	19	68	2	1.4792	2.2164349999999997	2.95367	0.0243998	4.9654e-6	0.114708	1.54322e-4
chr19	55388242	55388332	17396182	0	+	0.666667	(0.59,1]	chr19	1448684	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:PRIMIRNA:INTRON	RPL28:MIR6805	ENSG00000108107.15:ENSG00000284029.1	ENST00000344063.7:ENST00000558815.5:ENST00000560583.5:ENST00000560055.5:ENST00000560881.5:ENST00000559463.5:ENST00000426763.3:ENST00000558131.1:ENST00000615055.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	59	558	2	1.8009	2.216425	2.63195	0.00136355	8.5485e-6	0.0147447	2.41864e-4
chr17	59648283	59648342	16295094	0	+	0.457627	(0.455,0.49]	chr17	1321616	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000579456.5:ENST00000584313.5:ENST00000585198.1:ENST00000472129.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	48	2	1.79401	2.216365	2.63872	0.00510378	0.00448115	0.0390492	0.0342902
chr17	7501593	7501661	16105171	0	+	0.514706	(0.49,0.53]	chr17	1296742	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	17	2	2.05119	2.21608	2.38097	0.0425419	0.0360743	0.167547	0.145024
chr9	107329656	107329751	10410542	0	+	0.410526	(0.39,0.42]	chr9	784033	1	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	19	77	2	2.08324	2.21596	2.34868	7.37242e-4	4.19293e-4	0.00882884	0.00611538
chr8	47929091	47929178	9817105	0	-	0.390805	(0.39,0.42]	chr8	742837	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000541488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	44	2	1.94226	2.215625	2.48899	0.01151	6.84309e-4	0.0679423	0.00836671
chr19	40757408	40757504	17330865	0	+	0.5625	(0.53,0.59]	chr19	1436135	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNRPA	ENSG00000077312.9	ENST00000601545.5:ENST00000601253.5:ENST00000597353.5:ENST00000599362.5:ENST00000599570.5:ENST00000243563.8:ENST00000601393.1:ENST00000598923.1:ENST00000600456.1:ENST00000598452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	55	2	1.97928	2.21535	2.45142	0.0218546	4.64724e-4	0.104785	0.00615823
chr1	77963573	77963644	1112826	0	-	0.366197	(0.36,0.39]	chr1	111890	1	CDS	CDS:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.1437	2.215045	2.28639	0.0340515	0.00768469	0.141465	0.050396
chr9	121180999	121181098	10835885	0	-	0.40404	(0.39,0.42]	chr9	820919	30	UTR3	UTR3:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	2.18155	2.2150100000000004	2.24847	0.0283931	0.00147373	0.127654	0.0150084
chr1	22092113	22092212	93085	0	+	0.343434	(0.33,0.36]	chr1	10799	7	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.97993	2.2148950000000003	2.44986	0.00884101	0.00563343	0.0563713	0.0422191
chr19	34379517	34379562	17300344	0	+	0.511111	(0.49,0.53]	chr19	1429854	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000589399.6:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000590362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	79	2	1.71819	2.214865	2.71154	0.0127186	3.12541e-5	0.0719798	6.97306e-4
chr15	90882572	90882671	15103388	0	+	0.686869	(0.59,1]	chr15	1188584	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	78	2	1.57629	2.21451	2.85273	0.0363893	6.88883e-4	0.14906	0.00841789
chr5	154814485	154814583	6315015	0	+	0.622449	(0.59,1]	chr5	492515	5	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	8	78	2	1.57629	2.21451	2.85273	0.0363893	6.88883e-4	0.14906	0.00841789
chr3	14943477	14943576	4050031	0	-	0.585859	(0.53,0.59]	chr3	340108	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	4	23	2	1.78041	2.21439	2.64837	0.0407112	0.0199467	0.163285	0.0984041
chr1	205713912	205714011	1461994	0	-	0.363636	(0.36,0.39]	chr1	147460	12	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	10	39	2	2.18868	2.214085	2.23949	0.00436393	0.00261122	0.0340502	0.0230705
chr18	35140756	35140853	16822721	0	+	0.371134	(0.36,0.39]	chr18	1387343	5	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	2.09786	2.2140199999999997	2.33018	0.00658605	0.0030776	0.0454205	0.0261799
chr1	22081721	22081794	92975	0	+	0.383562	(0.36,0.39]	chr1	10780	1	CDS	CDS:UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000498236.1:ENST00000656825.1:ENST00000315554.13:ENST00000651171.1:ENST00000652582.1:ENST00000667384.1:ENST00000411827.1:ENST00000662562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	48	2	1.78231	2.213865	2.64542	0.00611176	6.12028e-4	0.0439741	0.00763546
chr1	35641432	35641526	938725	0	-	0.648936	(0.59,1]	chr1	98727	1	UTR5	UTR5:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4	protein_coding	protein_coding	protein_coding	protein_coding	9	88	2	2.15132	2.213855	2.27639	0.00454202	0.00420132	0.035205	0.0328662
chr5	70946120	70946176	6024616	0	+	0.357143	(0.33,0.36]	chr5	472087	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2:ENST00000518504.5:ENST00000513228.1:ENST00000510679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	2.13965	2.213785	2.28792	0.0297101	0.0239159	0.129986	0.112531
chr3	196051842	196051941	4663159	0	-	0.434343	(0.42,0.455]	chr3	385550	27	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	21	90	2	2.10053	2.21363	2.32673	5.60842e-4	2.83049e-4	0.0077262	0.00417057
chr5	126836547	126836642	6202852	0	+	0.378947	(0.36,0.39]	chr5	483234	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	111	2	1.47082	2.21345	2.95608	0.0078906	1.79412e-6	0.0522603	6.53513e-5
chr2	216148179	216148276	2380139	0	+	0.371134	(0.36,0.39]	chr2	213829	2	CDS	CDS:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	37	2	1.85874	2.213305	2.56787	0.0415243	4.4684e-4	0.164804	0.00601445
chr16	2155777	2155858	15491020	0	+	0.802469	(0.59,1]	chr16	1226944	2	UTR5	UTR5:EXON_MRNA	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	70	2	1.73729	2.213245	2.6892	0.0303312	0.00147019	0.129874	0.0149767
chr1	20749722	20749802	883169	0	-	0.45	(0.42,0.455]	chr1	91355	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5:ENST00000491748.1:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	1.95205	2.21292	2.47379	0.0248244	0.00996858	0.113644	0.0621728
chr6	34244830	34244884	7124342	0	+	0.611111	(0.59,1]	chr6	548261	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	182	2	2.12361	2.212795	2.30198	0.00256028	3.07447e-4	0.0234951	0.00444575
chr1	150974618	150974714	1291470	0	-	0.78125	(0.59,1]	chr1	128718	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	CERS2	ENSG00000143418.20	ENST00000271688.10:ENST00000345896.8:ENST00000368954.10:ENST00000361419.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	42	2	2.03921	2.212675	2.38614	0.0371471	0.0128707	0.151849	0.0725185
chr17	81701703	81701803	16381124	0	+	0.62	(0.59,1]	chr17	1331935	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000676462.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000678658.1:ENST00000677159.1:ENST00000573949.1:ENST00000678607.1:ENST00000573320.2:ENST00000677466.1:ENST00000679340.1:ENST00000570652.2:ENST00000677663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	42	2	2.03921	2.212675	2.38614	0.0371471	0.0128707	0.151849	0.0725185
chr17	35836132	35836186	16208656	0	+	0.37037	(0.36,0.39]	chr17	1309257	1	CDS	CDS:UTR3:EXON_MRNA	TAF15	ENSG00000270647.6	ENST00000603067.5:ENST00000604879.5:ENST00000605844.6:ENST00000603777.5:ENST00000603393.5:ENST00000604841.5:ENST00000603346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	29	2	2.16717	2.212555	2.25794	0.0152504	0.00429221	0.0828908	0.0333617
chr6	44253694	44253791	7161629	0	+	0.484536	(0.455,0.49]	chr6	553873	2	UTR3	UTR3:EXON_MRNA	HSP90AB1	ENSG00000096384.20	ENST00000620073.4:ENST00000353801.7:ENST00000371646.10:ENST00000371554.2	protein_coding	protein_coding	protein_coding	protein_coding	148	639	2	2.10657	2.212545	2.31852	1.53345e-5	2.52991e-6	4.3016e-4	8.76245e-5
chr5	112162174	112162272	6150857	0	+	0.377551	(0.36,0.39]	chr5	480413	6	EXON_LNCRNA	EXON_LNCRNA	EPB41L4A-AS1	ENSG00000224032.7	ENST00000663232.1:ENST00000427306.2:ENST00000413221.7:ENST00000442823.2:ENST00000508590.1	lncRNA	lncRNA	lncRNA	lncRNA	14	62	2	1.76426	2.21216	2.66006	0.0178361	4.49638e-5	0.0918323	9.41035e-4
chr11	110230605	110230702	12597162	0	-	0.43299	(0.42,0.455]	chr11	976511	13	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	49	2	1.97671	2.212135	2.44756	0.00554508	9.46189e-4	0.0405292	0.0113687
chr6	85612488	85612586	7825773	0	-	0.285714	[0,0.29]	chr6	599558	49	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	16	2	1.80685	2.2115650000000002	2.61628	0.0438772	0.0101434	0.163572	0.0626311
chr19	40818510	40818607	17567656	0	-	0.597938	(0.59,1]	chr19	1476645	2	EXON_LNCRNA	EXON_LNCRNA	CYP2F2P	ENSG00000237118.3	ENST00000641827.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	40	2	2.09833	2.2114399999999996	2.32455	0.0520547	0.0150311	0.193787	0.0816517
chr7	139422619	139422712	8566310	0	+	0.376344	(0.36,0.39]	chr7	653683	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	32	2	1.66365	2.211395	2.75914	0.0345996	8.69953e-4	0.143631	0.0101157
chr19	3976251	3976300	17430170	0	-	0.489796	(0.455,0.49]	chr19	1454682	1	CDS	CDS:UTR3:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	254	1212	2	1.77656	2.2113199999999997	2.64608	1.53449e-4	6.04529e-8	0.00278926	3.63261e-6
chr20	36049152	36049250	17956033	0	-	0.336735	(0.33,0.36]	chr20	1521358	37	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	17	57	2	1.86342	2.2110250000000002	2.55863	0.00270082	3.9745e-4	0.0236323	0.00588767
chr5	151805395	151805490	6299779	0	+	0.4	(0.39,0.42]	chr5	491958	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	2.10425	2.21099	2.31773	0.00810106	0.00382583	0.0528637	0.0319415
chr18	36796604	36796704	17079099	0	-	0.51	(0.49,0.53]	chr18	1403215	26	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	46	2	1.52104	2.21073	2.90042	0.0273533	3.88511e-4	0.123591	0.00534839
chr1	43978103	43978199	169392	0	+	0.645833	(0.59,1]	chr1	21858	2	UTR3	UTR3:EXON_MRNA	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	69	2	2.16581	2.21059	2.25537	0.00890868	0.00657102	0.0567495	0.0458787
chrX	40651417	40651514	19046453	0	-	0.278351	[0,0.29]	chrX	1618839	19	UTR3	UTR3:EXON_MRNA:INTRON	MED14	ENSG00000180182.11	ENST00000324817.6:ENST00000416199.5	protein_coding	protein_coding	protein_coding	protein_coding	5	15	2	1.5959700000000001	2.2102	2.82443	0.0533838	0.0180803	0.184995	0.0920398
chr6	27824280	27824336	7105156	0	+	0.642857	(0.59,1]	chr6	543466	2	CDS	CDS:EXON_MRNA	H4C11	ENSG00000197238.5	ENST00000355057.3	protein_coding	protein_coding	protein_coding	protein_coding	9	89	2	1.8279	2.21012	2.59234	0.015383	0.00110395	0.0833374	0.0127339
chr17	67109305	67109400	16651029	0	-	0.494737	(0.49,0.53]	chr17	1369353	3	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	1.9035	2.210105	2.51671	0.0295204	0.00768763	0.129773	0.050396
chr19	8468773	8468834	17220652	0	+	0.52459	(0.49,0.53]	chr19	1417661	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000601645.5:ENST00000598367.5:ENST00000597270.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	36	2	1.66773	2.20994	2.75215	0.0381288	8.79689e-4	0.149227	0.0107294
chr13	25331876	25331975	13647870	0	+	0.323232	(0.29,0.33]	chr13	1075908	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NUP58	ENSG00000139496.16	ENST00000381736.8:ENST00000466694.5:ENST00000463407.5:ENST00000381718.7:ENST00000381747.7:ENST00000394327.2:ENST00000477876.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	14	2	1.74619	2.20948	2.67277	0.0509174	0.0255386	0.181793	0.117089
chrX	141908303	141908389	18883549	0	+	0.5	(0.49,0.53]	chrX	1608999	1	CDS	CDS:EXON_MRNA	MAGEC1	ENSG00000155495.9	ENST00000285879.5:ENST00000406005.2	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.69633	2.209425	2.72252	0.0531914	0.0161474	0.184818	0.0860154
chr1	156009145	156009243	1313060	0	-	0.571429	(0.53,0.59]	chr1	133080	2	UTR3	UTR3:EXON_MRNA	SSR2	ENSG00000163479.14	ENST00000295702.9:ENST00000472467.1:ENST00000488179.6:ENST00000529008.5:ENST00000496742.5:ENST00000484320.6:ENST00000532074.5:ENST00000480176.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	32	2	1.39828	2.20941	3.02054	0.0486819	0.00577011	0.175495	0.0426551
chr7	157182107	157182180	8635870	0	+	0.39726	(0.39,0.42]	chr7	659674	1	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	1.60776	2.20941	2.81106	0.0291807	6.4431e-4	0.129773	0.00799617
chr9	128169700	128169800	10863742	0	-	0.56	(0.53,0.59]	chr9	823403	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000471839.5:ENST00000476727.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	1.39828	2.20941	3.02054	0.0486819	0.00577011	0.175495	0.0426551
chr12	112507821	112507920	13095558	0	+	0.464646	(0.455,0.49]	chr12	1021682	21	UTR3	UTR3:EXON_MRNA	PTPN11	ENSG00000179295.18	ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.90955	2.209295	2.50904	0.0310515	0.0171034	0.131262	0.0903636
chr2	69904951	69905046	1878082	0	+	0.336842	(0.33,0.36]	chr2	177353	7	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNRNP27:MXD1	ENSG00000124380.11:ENSG00000059728.11	ENST00000244227.8:ENST00000409116.5:ENST00000435990.5:ENST00000487029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	33	2	2.1972	2.20911	2.22102	0.00736622	0.00332656	0.0490627	0.0277823
chr1	225982801	225982901	1531393	0	-	0.25	[0,0.29]	chr1	153219	2	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	9	22	2	1.34442	2.2089600000000003	3.0735	0.046303	0.00785095	0.170072	0.0520241
chr17	37085383	37085481	16523312	0	-	0.510204	(0.49,0.53]	chr17	1352032	5	UTR3	UTR3:EXON_MRNA	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.81659	2.208875	2.60116	0.0376859	0.0056515	0.147713	0.0422191
chr5	31526356	31526448	6517201	0	-	0.445652	(0.42,0.455]	chr5	504747	4	CDS	CDS:EXON_MRNA	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1:ENST00000507438.5	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	1.44978	2.20883	2.96788	0.0463803	0.00109784	0.177188	0.0119666
chr17	29285991	29286086	16491131	0	-	0.452632	(0.42,0.455]	chr17	1348893	1	CDS	CDS:EXON_MRNA:INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	2.05515	2.2088099999999997	2.36247	0.0462889	0.017518	0.176878	0.0924156
chr2	85322466	85322565	2770135	0	-	0.50505	(0.49,0.53]	chr2	245643	46	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8:ENST00000409232.7:ENST00000409015.5	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.03065	2.2087399999999997	2.38683	0.0189484	0.012654	0.0958835	0.0718207
chr1	180519015	180519067	1397582	0	-	0.442308	(0.42,0.455]	chr1	141453	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206905.1	ENST00000384178.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	26	110	2	1.84508	2.208615	2.57215	0.00149287	2.73519e-5	0.0152011	6.95757e-4
chr5	95652203	95652271	6107326	0	+	0.441176	(0.42,0.455]	chr5	478137	2	UTR5	UTR5:EXON_MRNA	RFESD	ENSG00000175449.14	ENST00000511684.5:ENST00000380005.9:ENST00000506212.1:ENST00000311364.8:ENST00000458310.1:ENST00000504893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	20	2	2.07474	2.208325	2.34191	0.0338882	0.0159091	0.139841	0.0854674
chr10	5456663	5456740	10909065	0	+	0.61039	(0.59,1]	chr10	830428	2	CDS	CDS:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	4	39	2	1.99004	2.208215	2.42639	0.0409084	0.0214639	0.163285	0.102904
chr11	102396916	102397013	12562687	0	-	0.319588	(0.29,0.33]	chr11	974345	7	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	14	47	2	2.18768	2.2080349999999997	2.22839	0.00486332	7.3036e-4	0.0374757	0.00874853
chr1	35434993	35435081	936950	0	-	0.511364	(0.49,0.53]	chr1	98531	1	CDS	CDS:EXON_MRNA	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000373266.8:ENST00000426982.6	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.8541	2.207965	2.56183	0.0261296	0.0205565	0.118976	0.0996997
chr7	150322829	150322925	8614611	0	+	0.572917	(0.53,0.59]	chr7	657670	3	UTR5	UTR5:EXON_MRNA	ZBED6CL	ENSG00000188707.6	ENST00000343855.6	protein_coding	protein_coding	protein_coding	protein_coding	7	41	2	2.14205	2.207625	2.2732	0.0123179	0.00369236	0.070688	0.030936
chr5	179730242	179730342	6414476	0	+	0.25	[0,0.29]	chr5	499211	17	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	69	194	2	1.76737	2.207445	2.64752	6.83428e-4	6.94024e-7	0.00876781	2.92826e-5
chr2	61496878	61496942	2690547	0	-	0.328125	(0.29,0.33]	chr2	240381	1	CDS	CDS:UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	32	2	1.90611	2.20733	2.50855	0.00854155	0.0023535	0.0551026	0.0222204
chr12	52950749	52950827	12884253	0	+	0.551282	(0.53,0.59]	chr12	1001696	1	CDS	CDS:EXON_MRNA	KRT18	ENSG00000111057.11	ENST00000388837.6:ENST00000550600.5:ENST00000388835.4:ENST00000549078.5:ENST00000548015.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	37	2	2.0404	2.20721	2.37402	0.0362529	0.00230837	0.148525	0.0211205
chr2	197494156	197494250	3106846	0	-	0.297872	(0.29,0.33]	chr2	274663	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	125	2	1.5524	2.20701	2.86162	0.0052393	7.3472e-7	0.0399155	3.06946e-5
chr11	5363198	5363298	12241730	0	-	0.54	(0.53,0.59]	chr11	946181	159	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	19	2	1.90953	2.207	2.50447	0.0517711	0.0301162	0.193577	0.130016
chr15	64093768	64093857	15339266	0	-	0.573034	(0.53,0.59]	chr15	1210861	1	UTR5	UTR5:EXON_MRNA	CIAO2A	ENSG00000166797.11	ENST00000300030.8:ENST00000380290.7:ENST00000559705.1:ENST00000557835.5:ENST00000559950.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.90953	2.207	2.50447	0.0517711	0.0301162	0.193577	0.130016
chr16	29485255	29485349	15909905	0	-	0.56383	(0.53,0.59]	chr16	1274266	7	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-345J4.11:NPIPB12	ENSG00000288632.1:ENSG00000169203.16	ENST00000675579.1:ENST00000458643.3:ENST00000550665.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	19	2	1.90953	2.207	2.50447	0.0517711	0.0301162	0.193577	0.130016
chr16	66933613	66933676	15987055	0	-	0.539683	(0.53,0.59]	chr16	1282655	1	CDS	CDS:UTR3:EXON_MRNA	CIAO2B	ENSG00000166595.12	ENST00000422424.7:ENST00000568572.5:ENST00000562362.5:ENST00000567511.1:ENST00000563490.1:ENST00000569299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	19	2	1.90953	2.207	2.50447	0.0517711	0.0301162	0.193577	0.130016
chr5	230937	231000	5847980	0	+	0.555556	(0.53,0.59]	chr5	459556	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000514027.5:ENST00000514233.1:ENST00000515752.5:ENST00000512962.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	19	2	1.90953	2.207	2.50447	0.0517711	0.0301162	0.193577	0.130016
chr13	45340711	45340810	14005969	0	-	0.59596	(0.59,1]	chr13	1098103	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000490277.1:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2:ENST00000442760.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	60	553	2	2.20089	2.206975	2.21306	2.38456e-4	8.53562e-5	0.0039283	0.00160276
chr4	82358725	82358792	5493517	0	-	0.373134	(0.36,0.39]	chr4	439978	2	CDS	CDS:UTR3:EXON_MRNA	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	56	2	1.76426	2.20683	2.6494	0.0178361	7.99975e-5	0.0918323	0.00151453
chr1	183544424	183544497	597926	0	+	0.561644	(0.53,0.59]	chr1	62094	2	CDS	CDS:EXON_MRNA	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000507469.5:ENST00000515829.6	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.15403	2.2068149999999997	2.2596	0.0185443	0.0118065	0.0948733	0.0686664
chr16	85590669	85590769	15797228	0	+	0.58	(0.53,0.59]	chr16	1256993	340	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.15403	2.2068149999999997	2.2596	0.0185443	0.0118065	0.0948733	0.0686664
chr18	49044054	49044154	17115257	0	-	0.49	(0.455,0.49]	chr18	1405347	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.72305	2.20679	2.69053	0.0324537	0.0182983	0.134899	0.0925808
chr2	36848159	36848259	2594595	0	-	0.39	(0.36,0.39]	chr2	233508	106	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.08671	2.2067449999999997	2.32678	0.0193538	0.01635	0.0943643	0.0867615
chr2	174229379	174229451	3021862	0	-	0.388889	(0.36,0.39]	chr2	267464	2	CDS	CDS:UTR5:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000427472.2	protein_coding	protein_coding	protein_coding	protein_coding	9	38	2	1.94692	2.206705	2.46649	0.0192083	7.95961e-4	0.0943643	0.00935982
chr1	19176659	19176727	876727	0	-	0.588235	(0.53,0.59]	chr1	90321	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	2.14205	2.20659	2.27113	0.0178853	0.0123179	0.0918323	0.070688
chr11	119336048	119336140	12163908	0	+	0.586957	(0.53,0.59]	chr11	938092	10	CDS	CDS:EXON_MRNA	RNF26	ENSG00000173456.5	ENST00000311413.5	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.14205	2.20659	2.27113	0.0178853	0.0123179	0.0918323	0.070688
chr17	43016060	43016144	16550652	0	-	0.535714	(0.53,0.59]	chr17	1357993	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VAT1	ENSG00000108828.16	ENST00000355653.8:ENST00000592388.1:ENST00000587173.5:ENST00000420567.7:ENST00000587147.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	30	2	2.14205	2.20659	2.27113	0.0178853	0.0123179	0.0918323	0.070688
chr1	179968958	179969049	580968	0	+	0.549451	(0.53,0.59]	chr1	60273	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	CEP350:RPSAP16	ENSG00000135837.16:ENSG00000235145.2	ENST00000491495.2:ENST00000367607.8:ENST00000447583.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	3	19	2	1.89806	2.20653	2.515	0.0532477	0.0292633	0.184818	0.129773
chr19	48968997	48969094	17604716	0	-	0.587629	(0.53,0.59]	chr19	1483492	10	UTR3	UTR3:EXON_MRNA	GYS1	ENSG00000104812.15	ENST00000263276.6:ENST00000323798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.89806	2.20653	2.515	0.0532477	0.0292633	0.184818	0.129773
chr20	2465707	2465763	17878974	0	-	0.535714	(0.53,0.59]	chr20	1512835	1	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	19	2	1.89806	2.20653	2.515	0.0532477	0.0292633	0.184818	0.129773
chr3	129257548	129257627	3730417	0	+	0.582278	(0.53,0.59]	chr3	318905	2	CDS	CDS:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	1.89806	2.20653	2.515	0.0532477	0.0292633	0.184818	0.129773
chr6	36902284	36902349	7135525	0	+	0.553846	(0.53,0.59]	chr6	549775	2	CDS	CDS:UTR5:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000355190.7:ENST00000373685.1:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	1.89806	2.20653	2.515	0.0532477	0.0292633	0.184818	0.129773
chr21	29343515	29343613	18090051	0	+	0.489796	(0.455,0.49]	chr21	1533713	8	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	10	44	2	1.96215	2.2061450000000002	2.45014	0.00422421	0.00397453	0.0328991	0.0322851
chr16	89561683	89561751	15810090	0	+	0.588235	(0.53,0.59]	chr16	1258677	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	198	2	2.034	2.206145	2.37829	1.75366e-4	7.13488e-5	0.00284527	0.00150747
chr12	110720482	110720575	13539220	0	-	0.322581	(0.29,0.33]	chr12	1065103	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	162	2	1.75632	2.2060649999999997	2.65581	0.00114082	1.22702e-6	0.0130105	4.75649e-5
chr4	41954790	41954888	4809494	0	+	0.408163	(0.39,0.42]	chr4	396957	7	UTR3	UTR3:EXON_MRNA	TMEM33	ENSG00000109133.13	ENST00000264452.9:ENST00000325094.9:ENST00000504986.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	22	2	2.149	2.205855	2.2627100000000002	0.0192666	0.0149155	0.0966228	0.0812412
chr17	75320072	75320170	16683203	0	-	0.326531	(0.29,0.33]	chr17	1373171	14	UTR3	UTR3:EXON_MRNA:INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1:ENST00000648046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	55	2	1.91015	2.205845	2.50154	0.00447087	1.16978e-4	0.034213	0.00222617
chr4	128287390	128287490	5639527	0	-	0.63	(0.59,1]	chr4	449301	2	CDS	CDS:EXON_MRNA:INTRON	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000512483.5	protein_coding	protein_coding	protein_coding	protein_coding	6	60	2	2.16424	2.205565	2.24689	0.0123032	0.00890458	0.0705839	0.0565003
chrM	7585	7685	19377213	0	+	0.44	(0.42,0.455]	chrM	1649807	1	CDS_START	CDS_START:CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	195	814	2	2.0161	2.2055	2.3949	3.40609e-5	5.81708e-7	7.50441e-4	2.79189e-5
chr6	17624651	17624742	7618967	0	-	0.527473	(0.49,0.53]	chr6	580522	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	11	49	2	1.72435	2.20544	2.68653	0.00946936	0.00122977	0.0595947	0.013593
chr12	48690943	48691042	13321356	0	-	0.282828	[0,0.29]	chr12	1044934	26	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.43697	2.20509	2.97321	0.0498317	2.24899e-4	0.179293	0.00374156
chr6	27810756	27810846	7105141	0	+	0.488889	(0.455,0.49]	chr6	543458	4	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	9	43	2	2.0008	2.20498	2.40916	0.0129467	0.00105201	0.0724783	0.0116806
chrX	73964365	73964462	18740569	0	+	0.412371	(0.39,0.42]	chrX	1599322	12	INTRON	INTRON	JPX	ENSG00000225470.8	ENST00000664637.1:ENST00000639185.1:ENST00000655090.1:ENST00000640437.1:ENST00000660546.1:ENST00000667886.1:ENST00000660840.1:ENST00000657179.1:ENST00000670506.1:ENST00000657910.1:ENST00000662120.1:ENST00000671207.1:ENST00000659254.1:ENST00000656624.1:ENST00000667573.1:ENST00000660856.1:ENST00000660836.1:ENST00000668590.1:ENST00000658649.1:ENST00000414209.6:ENST00000654137.1:ENST00000670994.1:ENST00000653479.1:ENST00000602772.5:ENST00000655879.1:ENST00000657372.1:ENST00000657096.1:ENST00000602985.6:ENST00000670685.1:ENST00000670503.1:ENST00000663027.1:ENST00000654995.1:ENST00000602895.6:ENST00000654374.1:ENST00000660087.1:ENST00000665032.1:ENST00000671336.1:ENST00000671476.1:ENST00000667057.1:ENST00000670192.1:ENST00000670464.1:ENST00000665345.1:ENST00000661546.1:ENST00000662543.1:ENST00000602938.6:ENST00000664295.1:ENST00000654005.1:ENST00000669149.1:ENST00000659852.1:ENST00000656509.1:ENST00000602294.6:ENST00000667294.1:ENST00000663470.1:ENST00000602920.6:ENST00000671021.1:ENST00000659849.1:ENST00000667937.1:ENST00000661130.1:ENST00000654196.1:ENST00000655994.1:ENST00000659373.1:ENST00000662239.1:ENST00000670805.1:ENST00000656263.1:ENST00000653069.1:ENST00000657638.1:ENST00000653808.1:ENST00000653929.1:ENST00000653885.1:ENST00000659023.1:ENST00000602546.5:ENST00000659622.1:ENST00000671518.1:ENST00000670408.1	lncRNA	lncRNA	lncRNA	lncRNA	9	36	2	1.4947	2.20489	2.91508	0.0374865	4.41174e-4	0.147062	0.0062930699999999996
chr8	140528646	140528746	10132129	0	-	0.41	(0.39,0.42]	chr8	760954	86	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.02663	2.20488	2.38313	0.0130764	0.0128066	0.0729985	0.0725185
chr14	96852840	96852939	14477708	0	+	0.373737	(0.36,0.39]	chr14	1131008	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000555351.2:ENST00000681195.1:ENST00000681524.1:ENST00000680084.1:ENST00000679533.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000680509.1:ENST00000557222.6:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000679736.1:ENST00000681176.1:ENST00000680922.1:ENST00000679903.1:ENST00000557352.2:ENST00000681101.1:ENST00000681419.1:ENST00000680348.1:ENST00000679941.1:ENST00000679452.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000681785.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000680724.1:ENST00000680339.1:ENST00000680384.1:ENST00000680222.1:ENST00000681077.1:ENST00000681061.1:ENST00000681677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	45	2	1.81435	2.2048	2.59525	0.0302191	2.00567e-4	0.129773	0.00317675
chr2	61518613	61518712	2690781	0	-	0.343434	(0.33,0.36]	chr2	240417	38	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	17	2	2.09934	2.2048	2.31026	0.0519897	0.0120497	0.18423900000000001	0.0694419
chr3	131462551	131462636	4450169	0	-	0.305882	(0.29,0.33]	chr3	370090	5	UTR3	UTR3:EXON_MRNA	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000510043.1:ENST00000425847.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	32	2	1.99403	2.20437	2.41471	0.0202925	0.00114926	0.098158	0.0124995
chr12	101714503	101714574	13048843	0	+	0.43662	(0.42,0.455]	chr12	1016506	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CHPT1	ENSG00000111666.11	ENST00000550385.1:ENST00000229266.8:ENST00000549872.5:ENST00000552351.5:ENST00000549128.5:ENST00000552215.5:ENST00000552329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	24	2	2.04415	2.20331	2.36247	0.0462889	0.0101476	0.176878	0.0627153
chr16	87403690	87403789	15801163	0	+	0.424242	(0.42,0.455]	chr16	1257525	7	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000570189.5:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	24	2	2.04415	2.20331	2.36247	0.0462889	0.0101476	0.176878	0.0627153
chr11	47467922	47468021	12386787	0	-	0.353535	(0.33,0.36]	chr11	956932	21	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	1.3818	2.20287	3.02394	0.0413881	8.89743e-4	0.164501	0.0102057
chr7	76327393	76327492	8863389	0	-	0.353535	(0.33,0.36]	chr7	677476	7	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	14	51	2	2.10798	2.202815	2.29765	0.00458903	5.09357e-4	0.0355575	0.00662599
chr19	9563281	9563379	17454586	0	-	0.459184	(0.455,0.49]	chr19	1459747	31	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	1.64975	2.20281	2.75587	0.0228527	0.00293507	0.108215	0.025146
chr3	139346947	139347044	3772073	0	+	0.43299	(0.42,0.455]	chr3	322556	2	CDS	CDS:EXON_MRNA	MRPS22	ENSG00000175110.13	ENST00000495075.5:ENST00000495225.1:ENST00000680020.1:ENST00000310776.9:ENST00000498505.5:ENST00000480938.5:ENST00000465373.5:ENST00000466690.5:ENST00000486705.1:ENST00000478464.5:ENST00000483545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	30	2	1.49942	2.20279	2.90616	0.0468435	0.00162359	0.171905	0.0169915
chr6	85622481	85622549	7825878	0	-	0.470588	(0.455,0.49]	chr6	599580	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	26	2	1.96875	2.2026950000000003	2.43664	0.0480352	0.00394058	0.180552	0.0315828
chr1	632519	632616	494	0	+	0.443299	(0.42,0.455]	chr1	106	16	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	59	237	2	1.86645	2.20254	2.53863	2.39339e-4	4.71988e-6	0.00394192	1.48019e-4
chr11	2944626	2944724	12233390	0	-	0.581633	(0.53,0.59]	chr11	944838	3	UTR3	UTR3:EXON_MRNA	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	41	2	1.39828	2.20251	3.00674	0.0486819	8.9408e-4	0.175495	0.01086
chr11	247363	247448	11756084	0	+	0.458824	(0.455,0.49]	chr11	897590	2	CDS	CDS:UTR3:EXON_MRNA	PSMD13	ENSG00000185627.18	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000528906.5:ENST00000621534.4:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	2.10347	2.20243	2.30139	0.0530131	0.0313707	0.195536	0.13127
chr12	48938066	48938164	13322620	0	-	0.489796	(0.455,0.49]	chr12	1045238	25	UTR3	UTR3:EXON_MRNA:INTRON	RP11-302B13.5:ARF3	ENSG00000272822.2:ENSG00000134287.10	ENST00000398092.4:ENST00000537495.2:ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.10347	2.20243	2.30139	0.0530131	0.0313707	0.195536	0.13127
chr15	41669283	41669379	14887935	0	+	0.46875	(0.455,0.49]	chr15	1169648	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MGA	ENSG00000174197.17	ENST00000566718.6:ENST00000545763.6:ENST00000570161.6:ENST00000563576.6:ENST00000566586.6:ENST00000219905.12:ENST00000682463.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.10347	2.20243	2.30139	0.0530131	0.0313707	0.195536	0.13127
chr15	75371278	75371378	15376872	0	-	0.48	(0.455,0.49]	chr15	1215753	20	UTR3	UTR3:EXON_MRNA	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	3	16	2	2.10347	2.20243	2.30139	0.0530131	0.0313707	0.195536	0.13127
chr18	26052623	26052697	17045881	0	-	0.459459	(0.455,0.49]	chr18	1401195	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.10347	2.20243	2.30139	0.0530131	0.0313707	0.195536	0.13127
chr22	17727631	17727729	18291152	0	+	0.489796	(0.455,0.49]	chr22	1552152	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1:ENST00000485631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	16	2	2.10347	2.20243	2.30139	0.0530131	0.0313707	0.195536	0.13127
chr3	41224533	41224633	3432458	0	+	0.51	(0.49,0.53]	chr3	298529	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000426215.5:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000488914.2:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.90685	2.20241	2.49797	0.0534351	0.00843736	0.184995	0.0546021
chr9	72007880	72007965	10688838	0	-	0.611765	(0.59,1]	chr9	808787	1	EXON_PSEUDO	EXON_PSEUDO	HSPB1P1	ENSG00000236060.2	ENST00000423240.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	50	2	2.09833	2.20228	2.30623	0.0170607	0.0150311	0.0896731	0.0816517
chr1	21748137	21748204	890217	0	-	0.432836	(0.42,0.455]	chr1	92154	1	CDS	CDS:EXON_MRNA	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000374730.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	20	2	1.93033	2.2020600000000004	2.47379	0.0505055	0.00996858	0.181202	0.0621728
chr1	46718275	46718371	983837	0	-	0.520833	(0.49,0.53]	chr1	103862	2	UTR5	UTR5:EXON_MRNA	EFCAB14	ENSG00000159658.15	ENST00000674268.1:ENST00000371933.8:ENST00000672422.2:ENST00000674435.1:ENST00000479745.6:ENST00000674495.1:ENST00000674263.1:ENST00000459797.2:ENST00000674415.1:ENST00000484461.2:ENST00000674302.1:ENST00000674331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	22	2	1.99044	2.20204	2.41364	0.0435903	0.0112538	0.170594	0.0665375
chr4	82358658	82358725	5493516	0	-	0.447761	(0.42,0.455]	chr4	439978	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	84	2	2.18116	2.20179	2.22242	0.001203	3.18139e-4	0.0134762	0.00456817
chr6	131820333	131820413	7403935	0	+	0.575	(0.53,0.59]	chr6	567502	1	EXON_SMALL	EXON_SMALL:INTRON	ENPP1:RN7SKP245	ENSG00000197594.14:ENSG00000200895.1	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1:ENST00000364025.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay	29	135	2	1.4538	2.20174	2.94968	0.00696544	9.96331e-6	0.0473262	3.01429e-4
chr1	148749692	148749789	458195	0	+	0.391753	(0.39,0.42]	chr1	45663	3	UTR3	UTR3:EXON_MRNA	NUDT4B	ENSG00000177144.8	ENST00000322209.5	protein_coding	protein_coding	protein_coding	protein_coding	16	64	2	1.98699	2.2017249999999997	2.41646	0.00129933	0.00123763	0.0136936	0.0136777
chr6	17658375	17658474	7619314	0	-	0.333333	(0.33,0.36]	chr6	580579	61	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	13	46	2	2.19355	2.2016850000000003	2.20982	0.00302788	0.00125321	0.026885	0.0133145
chr3	14943576	14943675	4050032	0	-	0.383838	(0.36,0.39]	chr3	340108	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	FGD5-AS1	ENSG00000225733.6	ENST00000430166.5:ENST00000424349.1:ENST00000655923.1:ENST00000665449.1:ENST00000665738.1	lncRNA	lncRNA	lncRNA	lncRNA	8	31	2	1.78505	2.201575	2.6181	0.0228572	0.00176908	0.108215	0.0172426
chr5	140537505	140537589	6255214	0	+	0.559524	(0.53,0.59]	chr5	487646	3	CDS	CDS:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000532219.5:ENST00000431508.5:ENST00000433049.5:ENST00000435794.5:ENST00000432301.5:ENST00000474060.1:ENST00000437495.1:ENST00000495578.1:ENST00000421706.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	2.0404	2.2014199999999997	2.36244	0.0362529	0.0131162	0.148525	0.073569
chr3	67375183	67375277	4255647	0	-	0.319149	(0.29,0.33]	chr3	357238	6	UTR3	UTR3:EXON_MRNA:INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.83055	2.20137	2.57219	0.0348758	9.93325e-4	0.144642	0.0111014
chr8	123207501	123207588	9588603	0	+	0.770115	(0.59,1]	chr8	727197	5	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	10	97	2	2.11947	2.2011700000000003	2.28287	0.00815168	0.00159219	0.0535952	0.0159023
chr1	112913695	112913792	1232313	0	-	0.381443	(0.36,0.39]	chr1	120455	20	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	10	39	2	2.11751	2.200855	2.2842	0.0049656	0.00296338	0.0381176	0.0253798
chr8	102863902	102863999	9984797	0	-	0.680412	(0.59,1]	chr8	753514	2	UTR5	UTR5:EXON_MRNA:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	95	2	1.77941	2.200625	2.62184	0.0140249	8.93288e-4	0.0768516	0.010245
chr10	5454264	5454350	10909037	0	+	0.465116	(0.455,0.49]	chr10	830415	1	CDS	CDS:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.99447	2.200555	2.40664	0.012436	0.0123662	0.0712518	0.0705839
chr2	218274785	218274884	3186636	0	-	0.515152	(0.49,0.53]	chr2	279898	7	UTR3	UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	35	2	1.94299	2.200485	2.45798	0.0152714	0.00353238	0.0828908	0.029076
chr19	6414390	6414481	17442187	0	-	0.637363	(0.59,1]	chr19	1456772	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000597656.5:ENST00000595223.5:ENST00000594496.5	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.81952	2.20045	2.58138	0.0162925	0.00235862	0.0867467	0.0215532
chr22	20574155	20574251	18299065	0	+	0.46875	(0.455,0.49]	chr22	1553488	6	EXON_MRNA	EXON_MRNA:INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5:ENST00000489651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	2.04847	2.200305	2.35214	0.0455621	0.0192065	0.168044	0.0943643
chr19	38729895	38729988	17323768	0	+	0.634409	(0.59,1]	chr19	1434384	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000589528.1	protein_coding	protein_coding	protein_coding	protein_coding	7	65	2	1.97731	2.200275	2.42324	0.0116918	0.00878719	0.0686664	0.0562439
chr22	19441264	19441358	18433495	0	-	0.340426	(0.33,0.36]	chr22	1570855	5	UTR3	UTR3:EXON_MRNA:INTRON	C22orf39:HIRA	ENSG00000242259.9:ENSG00000100084.14	ENST00000509549.5:ENST00000452818.1:ENST00000399562.9:ENST00000399568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	35	2	1.92877	2.2002	2.47163	0.0129725	0.00391839	0.0724783	0.0314356
chr11	65444357	65444457	11984787	0	+	0.55	(0.53,0.59]	chr11	920390	204	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	NEAT1:MIR612	ENSG00000245532.9:ENSG00000283791.1	ENST00000501122.2:ENST00000384994.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	22	121	2	1.94312	2.20019	2.4572600000000002	0.00165674	6.72315e-5	0.0163885	0.00142915
chr9	131197415	131197515	10496361	0	+	0.54	(0.53,0.59]	chr9	793351	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	104	2	2.11337	2.20008	2.28679	0.00102378	2.75661e-4	0.0121443	0.00408344
chr3	196348652	196348751	4664951	0	-	0.373737	(0.36,0.39]	chr3	385869	11	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	2.00093	2.199955	2.39898	0.00996106	0.00221341	0.0621728	0.0204985
chr20	5115117	5115199	17887784	0	-	0.280488	[0,0.29]	chr20	1514074	3	UTR3	UTR3:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	12	36	2	1.56356	2.19983	2.8361	0.0431251	5.62072e-5	0.161433	0.00124816
chr19	38724006	38724077	17323697	0	+	0.535211	(0.53,0.59]	chr19	1434345	2	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	8	48	2	1.97928	2.19979	2.4203	0.0218546	9.63254e-4	0.104785	0.0107809
chr6	35835303	35835403	7677933	0	-	0.55	(0.53,0.59]	chr6	588536	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	50	2	1.4107	2.199755	2.98881	0.046906	2.35204e-4	0.179138	0.00356397
chr1	116373421	116373511	423617	0	+	0.688889	(0.59,1]	chr1	41736	3	UTR5	UTR5:EXON_MRNA:INTRON	ATP1A1	ENSG00000163399.16	ENST00000418797.5:ENST00000295598.10:ENST00000488733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	96	2	1.64407	2.199595	2.75512	0.0227132	4.62727e-4	0.107633	0.00613432
chr4	153266908	153266959	5740732	0	-	0.411765	(0.39,0.42]	chr4	453552	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201786.1	ENST00000364916.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	20	79	2	1.91907	2.19946	2.47985	0.00190589	1.18973e-4	0.0183156	0.00226117
chr19	38305251	38305351	17559369	0	-	0.71	(0.59,1]	chr19	1474555	18	UTR3	UTR3:EXON_MRNA	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000586319.5:ENST00000592246.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	121	2	1.85635	2.1991899999999998	2.54203	0.0142857	2.87719e-4	0.0780535	0.00423277
chr12	53016541	53016610	12884386	0	+	0.521739	(0.49,0.53]	chr12	1001732	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	53	2	1.85272	2.199065	2.54541	0.0211739	2.65074e-4	0.101864	0.00395787
chr1	247156757	247156849	1603275	0	-	0.434783	(0.42,0.455]	chr1	159212	2	CDS	CDS:EXON_MRNA:INTRON	ZNF124	ENSG00000196418.13	ENST00000472531.5:ENST00000491356.5:ENST00000543802.3:ENST00000340684.10	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	2.07164	2.1990499999999997	2.32646	0.0101168	0.00624136	0.0626311	0.0443844
chr14	81474702	81474801	14732707	0	-	0.383838	(0.36,0.39]	chr14	1154139	33	UTR3	UTR3:EXON_MRNA	SEL1L	ENSG00000071537.14	ENST00000336735.9	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.02118	2.19896	2.37674	0.0251625	0.00529284	0.117055	0.0390084
chrX	65740281	65740378	18716368	0	+	0.474227	(0.455,0.49]	chrX	1596885	5	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	10	46	2	1.64975	2.1989	2.74805	0.0228527	3.3051e-4	0.108215	0.00470169
chr14	96565837	96565935	14476242	0	+	0.397959	(0.39,0.42]	chr14	1130890	9	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	1.81545	2.198875	2.5823	0.0160991	0.00246531	0.0866586	0.0230262
chr1	183553697	183553796	598034	0	+	0.50505	(0.49,0.53]	chr1	62141	6	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.21	ENST00000367537.7:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	48	2	1.77058	2.19876	2.62694	0.0133397	6.60942e-4	0.0743125	0.00866622
chr11	5342585	5342685	12241519	0	-	0.39	(0.36,0.39]	chr11	946161	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000300773.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	83	2	1.77073	2.1986850000000002	2.62664	0.00532822	2.50278e-5	0.0405598	5.82427e-4
chr10	73008038	73008129	11568238	0	-	0.373626	(0.36,0.39]	chr10	880432	10	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	24	104	2	1.42305	2.198655	2.97426	0.0197232	1.01762e-6	0.0959529	4.04731e-5
chr20	50893735	50893832	18006320	0	-	0.42268	(0.42,0.455]	chr20	1526243	24	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.05515	2.19853	2.34191	0.017518	0.0159091	0.0924156	0.0854674
chr20	32808387	32808484	17755555	0	+	0.443299	(0.42,0.455]	chr20	1498916	6	UTR3	UTR3:EXON_MRNA	DNMT3B	ENSG00000088305.18	ENST00000328111.6:ENST00000348286.6:ENST00000353855.6:ENST00000201963.3	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.7601	2.198375	2.63665	0.0312663	0.0048172	0.132093	0.0365653
chr9	128695049	128695146	10480930	0	+	0.360825	(0.36,0.39]	chr9	790686	5	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	14	52	2	2.02063	2.1983449999999998	2.37606	0.00306143	7.48691e-4	0.0271725	0.00895549
chr9	128178429	128178490	10863834	0	-	0.52459	(0.49,0.53]	chr9	823424	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000475471.1:ENST00000476239.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	26	2	1.78308	2.19799	2.6129	0.0425234	0.0052746	0.167547	0.0389109
chr5	133089628	133089695	6227026	0	+	0.492537	(0.49,0.53]	chr5	484781	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA4	ENSG00000170606.15	ENST00000304858.7:ENST00000617074.4:ENST00000615899.1	protein_coding	protein_coding	protein_coding	protein_coding	11	49	2	1.34075	2.197935	3.05512	0.0427685	1.59562e-4	0.168094	0.00263091
chr9	73166096	73166192	10304749	0	+	0.416667	(0.39,0.42]	chr9	776052	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000376911.1:ENST00000495713.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	65	2	2.03728	2.197915	2.35855	0.00508196	2.31761e-4	0.038965	0.00354435
chr4	105484993	105485092	5026461	0	+	0.484848	(0.455,0.49]	chr4	409127	4	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	57	2	1.61715	2.197865	2.77858	0.0342264	5.8997e-5	0.142155	0.00118443
chr19	38729524	38729617	17323764	0	+	0.666667	(0.59,1]	chr19	1434384	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000497637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	115	2	1.74761	2.197775	2.64794	0.011962800000000001	4.56002e-4	0.0700164	0.00646045
chr15	76287845	76287945	15382178	0	-	0.44	(0.42,0.455]	chr15	1216372	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000267950.12:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5:ENST00000559075.5:ENST00000560044.5:ENST00000559758.5:ENST00000560345.5:ENST00000559386.1:ENST00000560309.5:ENST00000561092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	54	2	1.54634	2.197695	2.84905	0.0338074	7.5591e-5	0.141431	0.00143985
chr10	68341173	68341241	11089754	0	+	0.426471	(0.42,0.455]	chr10	842849	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000480987.5:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	63	2	1.40714	2.19768	2.98822	0.0308776	2.95027e-5	0.131262	6.69242e-4
chr11	27495499	27495597	12314459	0	-	0.285714	[0,0.29]	chr11	952674	12	UTR3	UTR3:EXON_MRNA	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	1.7788	2.19754	2.61628	0.0208453	0.0101434	0.100997	0.0626311
chr12	103947310	103947393	13056922	0	+	0.457831	(0.455,0.49]	chr12	1017360	1	CDS	CDS:UTR3:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	48	238	2	1.81342	2.197255	2.58109	0.00162364	1.06867e-6	0.0169915	4.23248e-5
chr3	51969425	51969525	4181189	0	-	0.63	(0.59,1]	chr3	352426	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PCBP4:RP11-155D18.12:ABHD14B	ENSG00000090097.22:ENSG00000272762.5:ENSG00000114779.20	ENST00000489595.6:ENST00000488257.2:ENST00000483233.5:ENST00000315877.14:ENST00000361143.10:ENST00000487005.1:ENST00000395008.6:ENST00000461108.5:ENST00000525795.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	4	38	2	1.87297	2.197235	2.5215	0.032241	0.0308113	0.135671	0.130016
chr12	69588149	69588205	12943425	0	+	0.392857	(0.39,0.42]	chr12	1008970	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000546859.5:ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	68	2	1.55253	2.19714	2.84175	0.0135564	3.82109e-5	0.0755487	8.28276e-4
chr10	74107291	74107354	11117533	0	+	0.603175	(0.59,1]	chr10	846281	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000472585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	57	2	1.91544	2.196905	2.47837	0.0165875	0.00970721	0.0878414	0.0608296
chr1	96679153	96679246	1185020	0	-	0.397849	(0.39,0.42]	chr1	116525	4	EXON_PSEUDO	EXON_PSEUDO	RPL7P9	ENSG00000137970.7	ENST00000468715.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	31	2	1.65092	2.196675	2.74243	0.0216584	0.00369167	0.103121	0.030936
chr2	96283200	96283276	2790347	0	-	0.631579	(0.59,1]	chr2	248724	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000497539.5:ENST00000429650.1:ENST00000480242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	58	2	2.08709	2.1966599999999996	2.30623	0.0170607	0.00890645	0.0896731	0.0565003
chr21	33517064	33517141	18220463	0	-	0.493506	(0.49,0.53]	chr21	1546349	2	CDS	CDS:UTR3:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	26	2	2.12684	2.196625	2.26641	0.0190546	0.0134683	0.093872	0.0744999
chr16	20796369	20796429	15583015	0	+	0.35	(0.33,0.36]	chr16	1234814	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ACSM3	ENSG00000005187.12	ENST00000289416.10:ENST00000562251.5:ENST00000567387.5:ENST00000569141.1:ENST00000567711.1:ENST00000567006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	20	2	1.62754	2.19652	2.7655	0.0331893	0.0175892	0.137855	0.0918323
chr2	74892972	74893068	1893449	0	+	0.25	[0,0.29]	chr2	179646	22	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	12	36	2	1.85419	2.196285	2.53838	0.0136504	5.9913e-4	0.0760525	0.0075062
chr6	36923934	36924032	7135749	0	+	0.397959	(0.39,0.42]	chr6	549805	6	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000359359.6:ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.64934	2.195885	2.74243	0.0412247	0.00369167	0.155868	0.030936
chrX	20127310	20127409	18985423	0	-	0.272727	[0,0.29]	chrX	1616648	29	UTR3	UTR3:EXON_MRNA	EIF1AX	ENSG00000173674.11	ENST00000379607.10	protein_coding	protein_coding	protein_coding	protein_coding	16	42	2	1.34904	2.1958349999999998	3.04263	0.0392446	6.05547e-5	0.159701	0.00121263
chr11	62854536	62854620	12411585	0	-	0.321429	(0.29,0.33]	chr11	961821	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000539303.5:ENST00000545308.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	15	46	2	1.9084	2.19579	2.48318	0.00606296	2.92e-4	0.0432922	0.00463809
chr5	138179680	138179780	6243489	0	+	0.55	(0.53,0.59]	chr5	486320	1	CDS_START	CDS_START:CDS:EXON_MRNA	KIF20A	ENSG00000112984.12	ENST00000513276.5:ENST00000394894.8:ENST00000508792.5:ENST00000511638.5:ENST00000503417.1:ENST00000504621.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	1.60161	2.1957050000000002	2.7898	0.0451605	0.0128364	0.167576	0.0719798
chr6	34242711	34242795	7124318	0	+	0.595238	(0.59,1]	chr6	548249	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	230	2	2.0449	2.195615	2.34633	0.00282625	1.34649e-4	0.0252363	0.00230254
chr19	2269508	2269598	17195968	0	+	0.711111	(0.59,1]	chr19	1412837	1	UTR5	UTR5:EXON_MRNA	OAZ1:LLfos-48D6.2	ENSG00000104904.12:ENSG00000273734.1	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000621615.1:ENST00000582888.8:ENST00000593012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	159	2	1.55646	2.195525	2.83459	0.010461	1.52422e-4	0.063428	0.00254205
chr4	139388484	139388584	5128461	0	+	0.43	(0.42,0.455]	chr4	415252	5	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	8	38	2	2.11785	2.195515	2.27318	0.0154862	0.00211298	0.0836691	0.0198008
chr19	3977214	3977280	17430181	0	-	0.606061	(0.59,1]	chr19	1454689	1	CDS	CDS:EXON_MRNA:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	29	273	2	2.02647	2.1953250000000004	2.36418	0.00130451	1.20892e-4	0.0142517	0.00210329
chr1	55063779	55063876	203851	0	+	0.628866	(0.59,1]	chr1	26182	3	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	31	2	1.96416	2.195275	2.42639	0.044741	0.0409084	0.166115	0.163285
chrX	48793882	48793973	18693024	0	+	0.648352	(0.59,1]	chrX	1594413	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	10	90	2	1.89154	2.1950700000000003	2.4986	0.00669054	0.00349906	0.0465167	0.0296494
chr7	65954313	65954413	8301900	0	+	0.33	(0.29,0.33]	chr7	632921	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	12	36	2	1.81695	2.19457	2.57219	0.0105563	9.93325e-4	0.0637867	0.0111014
chr5	113013978	113014077	6153898	0	+	0.393939	(0.39,0.42]	chr5	480731	6	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	1.89145	2.19423	2.49701	0.0339607	0.0119663	0.141431	0.0700178
chr18	36796977	36797050	17079103	0	-	0.438356	(0.42,0.455]	chr18	1403217	2	CDS	CDS:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	28	2	2.05515	2.1939849999999996	2.33282	0.017518	0.00677333	0.0924156	0.0462932
chr3	197782108	197782208	3991868	0	+	0.38	(0.36,0.39]	chr3	336452	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FYTTD1	ENSG00000122068.13	ENST00000415708.6:ENST00000241502.9:ENST00000424384.2:ENST00000492360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	17	2	1.89872	2.19397	2.48922	0.056542	0.0110399	0.19417	0.0652374
chr6	132769669	132769769	7965471	0	-	0.39	(0.36,0.39]	chr6	609155	4	UTR3	UTR3:EXON_MRNA	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	17	2	1.89872	2.19397	2.48922	0.056542	0.0110399	0.19417	0.0652374
chr6	87675319	87675411	7827954	0	-	0.358696	(0.33,0.36]	chr6	599839	6	UTR3	UTR3:EXON_MRNA	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	3	12	2	2.07736	2.19381	2.31026	0.0519897	0.0442037	0.18423900000000001	0.172163
chrX	63298547	63298647	19088063	0	-	0.35	(0.33,0.36]	chrX	1624030	384	INTRON	INTRON	LINC01278	ENSG00000235437.8	ENST00000667050.1:ENST00000665386.1:ENST00000670731.1:ENST00000610088.6:ENST00000659363.1:ENST00000666891.1:ENST00000659374.1:ENST00000661141.1:ENST00000664128.1:ENST00000669572.1:ENST00000654366.1:ENST00000659087.1:ENST00000653861.1	lncRNA	lncRNA	lncRNA	lncRNA	3	12	2	2.07736	2.19381	2.31026	0.0519897	0.0442037	0.18423900000000001	0.172163
chr10	22536515	22536613	11411115	0	-	0.561224	(0.53,0.59]	chr10	869854	18	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	9	51	2	1.84678	2.1938	2.54082	0.0134899	0.00100675	0.0745701	0.011962800000000001
chrX	66266672	66266771	18718309	0	+	0.555556	(0.53,0.59]	chrX	1597078	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HEPH	ENSG00000089472.17	ENST00000519389.6:ENST00000683049.1:ENST00000458621.6:ENST00000684042.1:ENST00000343002.7:ENST00000336279.9:ENST00000441993.7:ENST00000419594.6:ENST00000682362.1:ENST00000425114.2:ENST00000682927.1:ENST00000683420.1:ENST00000684071.1:ENST00000684625.1:ENST00000684603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	36	2	1.88327	2.193635	2.504	0.0298124	0.00279409	0.129773	0.0241702
chr16	75577539	75577625	15741963	0	+	0.348837	(0.33,0.36]	chr16	1254269	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GABARAPL2	ENSG00000034713.8	ENST00000037243.7:ENST00000563744.1:ENST00000565985.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	38	2	1.95788	2.1935350000000002	2.42919	0.00652477	0.00151039	0.0455786	0.0160934
chr6	163571807	163571907	7540845	0	+	0.27	[0,0.29]	chr6	575649	12	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	44	2	2.02881	2.1934199999999997	2.35803	0.002766	9.33535e-4	0.0247437	0.0105624
chr10	123164952	123165046	11299073	0	+	0.319149	(0.29,0.33]	chr10	861589	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	11	34	2	1.77373	2.193305	2.61288	0.0110365	0.00138819	0.0665375	0.0149724
chr4	143553281	143553379	5136632	0	+	0.295918	(0.29,0.33]	chr4	415936	2	UTR3	UTR3:EXON_MRNA	SMARCA5	ENSG00000153147.6	ENST00000283131.4	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.14426	2.19326	2.24226	0.0306054	0.0142448	0.130226	0.077929
chr6	31510469	31510563	7115428	0	+	0.329787	(0.29,0.33]	chr6	545681	7	UTR3	UTR3:EXON_MRNA	MICB	ENSG00000204516.10	ENST00000538442.5:ENST00000399150.7:ENST00000252229.7	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.14426	2.19326	2.24226	0.0306054	0.0142448	0.130226	0.077929
chr1	28236183	28236270	115307	0	+	0.689655	(0.59,1]	chr1	14089	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP5IF1	ENSG00000130770.18	ENST00000497986.5:ENST00000335514.10:ENST00000468425.2:ENST00000465645.1	protein_coding	protein_coding	protein_coding	protein_coding	8	81	2	1.82129	2.19325	2.56521	0.0227814	0.00125196	0.105293	0.0138105
chr11	16755004	16755104	11825837	0	+	0.37	(0.36,0.39]	chr11	905235	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	C11orf58	ENSG00000110696.10	ENST00000228136.9:ENST00000525684.1:ENST00000528634.5:ENST00000524461.1:ENST00000531658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	2.05966	2.19322	2.32678	0.0366015	0.0193538	0.145024	0.0943643
chrX	41346858	41346935	18669485	0	+	0.363636	(0.36,0.39]	chrX	1592235	1	CDS	CDS:UTR3:EXON_MRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000616050.3:ENST00000647477.1:ENST00000611968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	17	2	2.05966	2.19322	2.32678	0.0366015	0.0193538	0.145024	0.0943643
chr6	43527633	43527731	7708122	0	-	0.489796	(0.455,0.49]	chr6	591479	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455285.2:ENST00000486936.2:ENST00000450462.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.08503	2.19321	2.30139	0.0530131	0.0158994	0.195536	0.0856643
chr16	66933986	66934066	15987060	0	-	0.5375	(0.53,0.59]	chr16	1282659	1	CDS	CDS:UTR3:EXON_MRNA	CIAO2B	ENSG00000166595.12	ENST00000422424.7:ENST00000568572.5:ENST00000562362.5:ENST00000567511.1:ENST00000563490.1:ENST00000569299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	1.87133	2.193165	2.515	0.0308819	0.0292633	0.130016	0.129773
chr1	220006174	220006243	1511059	0	-	0.434783	(0.42,0.455]	chr1	151047	2	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	34	2	1.99701	2.193155	2.3893	0.0235036	0.00221606	0.111072	0.0205138
chr2	75657954	75658053	1894588	0	+	0.333333	(0.33,0.36]	chr2	179770	28	UTR3	UTR3:EXON_MRNA:INTRON	MRPL19	ENSG00000115364.14	ENST00000393909.7:ENST00000358788.10:ENST00000409374.5:ENST00000492255.1:ENST00000453233.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.91461	2.19312	2.47163	0.0179419	0.0129725	0.0939469	0.0724783
chr17	38919476	38919575	16218419	0	+	0.565657	(0.53,0.59]	chr17	1310821	8	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.72707	2.193005	2.65894	0.0193255	0.015378	0.0943643	0.0833184
chr16	88623281	88623344	15806590	0	+	0.587302	(0.53,0.59]	chr16	1257949	2	CDS	CDS:EXON_MRNA	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000564161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	19	2	2.0404	2.1925049999999997	2.34461	0.0457008	0.0362529	0.168044	0.148525
chr21	25724559	25724639	18190552	0	-	0.275	[0,0.29]	chr21	1543997	2	UTR3	UTR3:EXON_MRNA:INTRON	ATP5PF	ENSG00000154723.13	ENST00000400099.5:ENST00000400093.3:ENST00000400087.7:ENST00000400090.7:ENST00000457143.6:ENST00000400094.5:ENST00000284971.8	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	1.72772	2.1923749999999997	2.65703	0.0107311	0.00320067	0.0652734	0.0280721
chr14	103521322	103521378	14795339	0	-	0.625	(0.59,1]	chr14	1159549	1	CDS	CDS:UTR3:EXON_MRNA	CKB	ENSG00000166165.13	ENST00000348956.7:ENST00000554282.5:ENST00000553528.5:ENST00000553652.5:ENST00000553610.5:ENST00000557569.1:ENST00000554426.5:ENST00000553878.5:ENST00000557287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	63	2	1.57004	2.192315	2.81459	0.0364827	0.00278977	0.145024	0.0249234
chr6	85612095	85612194	7825769	0	-	0.323232	(0.29,0.33]	chr6	599558	45	UTR3	UTR3:EXON_MRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	17	2	1.74619	2.19216	2.63813	0.0509174	0.00803229	0.181793	0.0528968
chr9	37588598	37588691	10645862	0	-	0.376344	(0.36,0.39]	chr9	805786	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-613M10.8:TOMM5:RP11-613M10.9	ENSG00000256966.6:ENSG00000175768.13:ENSG00000255872.3	ENST00000541804.1:ENST00000544475.5:ENST00000537239.2:ENST00000540941.1:ENST00000540557.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3:ENST00000544379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	60	2	1.91484	2.192135	2.46943	0.00697505	1.6661e-4	0.0474916	0.00271635
chr5	139307605	139307695	6248863	0	+	0.388889	(0.36,0.39]	chr5	486959	2	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000509644.5:ENST00000502394.1:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000508689.1:ENST00000514528.5:ENST00000504643.5:ENST00000514488.1:ENST00000503340.1:ENST00000504023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	79	2	1.50259	2.192095	2.8816	0.0116364	6.33218e-6	0.0682114	2.06627e-4
chr1	201997396	201997475	662028	0	+	0.56962	(0.53,0.59]	chr1	66441	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5:ENST00000449524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	19	2	2.0289	2.192005	2.35511	0.0445399	0.0373899	0.172163	0.146698
chr17	76143552	76143651	16687604	0	-	0.545455	(0.53,0.59]	chr17	1374345	12	UTR3	UTR3:EXON_MRNA:INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000589912.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.0289	2.192005	2.35511	0.0445399	0.0373899	0.172163	0.146698
chr22	29769719	29769818	18338426	0	+	0.585859	(0.53,0.59]	chr22	1558470	1	UTR3	UTR3:EXON_MRNA	UQCR10	ENSG00000184076.13	ENST00000330029.6:ENST00000401406.3	protein_coding	protein_coding	protein_coding	protein_coding	3	19	2	2.0289	2.192005	2.35511	0.0445399	0.0373899	0.172163	0.146698
chr9	135944333	135944430	10887550	0	-	0.56701	(0.53,0.59]	chr9	826839	17	INTRON	INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	19	2	2.0289	2.192005	2.35511	0.0445399	0.0373899	0.172163	0.146698
chrX	49600783	49600844	18695309	0	+	0.590164	(0.59,1]	chrX	1595073	2	CDS	CDS:EXON_MRNA	GAGE1	ENSG00000205777.18	ENST00000381709.6:ENST00000381700.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	95	2	1.76475	2.19186	2.61897	0.0143469	9.74438e-4	0.078241	0.0116117
chrX	45070058	45070154	18679989	0	+	0.4375	(0.42,0.455]	chrX	1592685	6	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1:ENST00000675525.1:ENST00000414389.5:ENST00000675546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	1.78888	2.19175	2.59462	0.0259111	0.0062772	0.117079	0.0445415
chr2	97646061	97646086	1946456	0	+	0.56	(0.53,0.59]	chr2	184707	1	UTR5	UTR5:EXON_MRNA	COX5B	ENSG00000135940.7	ENST00000258424.3	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.14885	2.191455	2.23406	0.0262993	0.00870728	0.117164	0.0558165
chr2	219172585	219172685	3191059	0	-	0.54	(0.53,0.59]	chr2	280737	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CNPPD1	ENSG00000115649.16	ENST00000360507.10:ENST00000409789.5	protein_coding	protein_coding	protein_coding	protein_coding	5	30	2	2.16037	2.19122	2.22207	0.0254312	0.00910511	0.117089	0.0576716
chr1	24839950	24840041	103266	0	+	0.395604	(0.39,0.42]	chr1	12081	2	CDS	CDS:EXON_MRNA	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.99911	2.1911199999999997	2.38313	0.0477207	0.0128066	0.17993	0.0725185
chr17	65014057	65014156	16642821	0	-	0.393939	(0.39,0.42]	chr17	1368930	49	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.99911	2.1911199999999997	2.38313	0.0477207	0.0128066	0.17993	0.0725185
chr11	61964372	61964460	12406723	0	-	0.386364	(0.36,0.39]	chr11	960789	2	UTR3	UTR3:EXON_MRNA:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.81435	2.191085	2.56782	0.0302191	0.00659672	0.129773	0.0460001
chr7	143305946	143306043	8581143	0	+	0.42268	(0.42,0.455]	chr7	655693	10	UTR3	UTR3:EXON_MRNA	CASP2	ENSG00000106144.20	ENST00000619992.4:ENST00000310447.10:ENST00000472067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	40	2	2.18978	2.191015	2.19225	0.00548036	0.00355167	0.0402071	0.0300064
chr1	15066091	15066190	65052	0	+	0.353535	(0.33,0.36]	chr1	7164	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000361144.9:ENST00000400798.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	30	2	1.96645	2.19093	2.41541	0.0197415	0.00212038	0.095966	0.0198025
chr11	14279241	14279336	12280526	0	-	0.442105	(0.42,0.455]	chr11	949479	15	UTR3	UTR3:EXON_MRNA	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000414023.6:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.95205	2.190715	2.42938	0.0248244	0.0045028	0.113644	0.0349711
chrX	71300580	71300674	18730902	0	+	0.553191	(0.53,0.59]	chrX	1598445	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	200	2	1.80834	2.19044	2.57254	0.00187152	5.02865e-6	0.0187325	1.55698e-4
chr5	95793830	95793924	6108493	0	+	0.489362	(0.455,0.49]	chr5	478270	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000503737.1:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.79605	2.19042	2.58479	0.0427708	0.00200187	0.168094	0.0189555
chr15	78170181	78170279	15039146	0	+	0.44898	(0.42,0.455]	chr15	1182938	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	IDH3A	ENSG00000166411.14	ENST00000299518.7:ENST00000558535.1:ENST00000557960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	28	2	2.15137	2.19035	2.22933	0.0123864	0.0102262	0.07101	0.062872
chr5	151799211	151799233	6299707	0	+	0.409091	(0.39,0.42]	chr5	491931	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678194.1:ENST00000679004.1:ENST00000678726.1:ENST00000679207.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	19	2	1.66154	2.1903300000000003	2.71912	0.0452475	0.0163125	0.174743	0.0866586
chr16	2767965	2768063	15494955	0	+	0.642857	(0.59,1]	chr16	1227802	66	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000572883.1:ENST00000572721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	153	2	1.74821	2.19015	2.63209	0.00592572	2.99383e-4	0.0428081	0.00472028
chr15	68181210	68181282	14994928	0	+	0.5	(0.49,0.53]	chr15	1178722	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000567417.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	27	2	1.89541	2.1901450000000002	2.48488	0.032052	0.0117923	0.133433	0.0686664
chr18	36796404	36796504	17079097	0	-	0.41	(0.39,0.42]	chr18	1403215	24	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	36	2	2.18155	2.1901200000000003	2.19869	0.0283931	0.0019135	0.127654	0.018324
chr11	134204898	134204971	12675447	0	-	0.479452	(0.455,0.49]	chr11	983437	1	CDS	CDS:EXON_MRNA	NCAPD3	ENSG00000151503.13	ENST00000534548.7:ENST00000534532.6:ENST00000525964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.8708	2.18992	2.50904	0.0324007	0.0310515	0.134751	0.131262
chr12	62335990	62336090	12913824	0	+	0.49	(0.455,0.49]	chr12	1006428	9	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	1.8708	2.18992	2.50904	0.0324007	0.0310515	0.134751	0.131262
chr4	26430799	26430853	4766677	0	+	0.481481	(0.455,0.49]	chr4	394279	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RBPJ	ENSG00000168214.21	ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000515023.6:ENST00000505727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	1.8708	2.18992	2.50904	0.0324007	0.0310515	0.134751	0.131262
chr17	43233977	43234076	16552258	0	-	0.666667	(0.59,1]	chr17	1358297	1	INTRON	INTRON	CCDC200	ENSG00000236383.8	ENST00000594691.6:ENST00000615433.2	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	1.87624	2.18973	2.50322	0.0194045	0.00863444	0.0944333	0.0556009
chrM	1647	1745	19377155	0	+	0.438776	(0.42,0.455]	chrM	1649798	12	EXON_SMALL	EXON_SMALL	MT-TV:MT-RNR2	ENSG00000210077.1:ENSG00000210082.2	ENST00000387342.1:ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA:Mt_tRNA	Mt_rRNA:Mt_tRNA	8677	38551	2	1.65639	2.189685	2.72298	1.79181e-4	1.35909e-8	0.00312822	1.01122e-6
chr11	4092833	4092927	11774002	0	+	0.510638	(0.49,0.53]	chr11	900920	12	UTR3	UTR3:EXON_MRNA	STIM1	ENSG00000167323.12	ENST00000526596.2:ENST00000300737.8:ENST00000616714.4	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.81659	2.18921	2.56183	0.0376859	0.0261296	0.147713	0.118976
chr7	92202242	92202334	8923015	0	-	0.423913	(0.42,0.455]	chr7	680746	1	EXON_SMALL	EXON_SMALL:INTRON	CTB-161K23.3:KRIT1:AC000120.7:Y_RNA	ENSG00000285953.1:ENSG00000001631.16:ENSG00000243107.1:ENSG00000200769.1	ENST00000650585.1:ENST00000394507.5:ENST00000458177.6:ENST00000340022.6:ENST00000394505.7:ENST00000486261.5:ENST00000414227.1:ENST00000475770.5:ENST00000412043.6:ENST00000394503.6:ENST00000363899.1	misc_RNA	misc_RNA	misc_RNA:protein_coding:lncRNA	misc_RNA:protein_coding:retained_intron:lncRNA	9	40	2	2.11744	2.1892050000000003	2.26097	0.00497755	0.00404179	0.0381953	0.032143
chr8	143579784	143579830	10145096	0	-	0.478261	(0.455,0.49]	chr8	762484	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1D	ENSG00000104529.18	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000618139.3:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000526838.5:ENST00000532741.5:ENST00000527741.5:ENST00000530109.5:ENST00000529576.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.10347	2.189195	2.27492	0.0313707	0.0193827	0.13127	0.0943643
chr9	112331067	112331161	10804013	0	-	0.478723	(0.455,0.49]	chr9	818501	2	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	2.10347	2.189195	2.27492	0.0313707	0.0193827	0.13127	0.0943643
chr3	184331945	184332015	3949333	0	+	0.571429	(0.53,0.59]	chr3	332492	1	CDS	CDS:UTR3:EXON_MRNA	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000442406.5:ENST00000435046.7:ENST00000382330.7:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000411531.5:ENST00000441154.5:ENST00000434061.6:ENST00000676453.1:ENST00000422614.5:ENST00000460829.5:ENST00000475721.5:ENST00000478291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	34	2	2.0042	2.189095	2.37399	0.0126178	0.0113999	0.0717599	0.0668496
chr1	225921289	225921371	1531294	0	-	0.609756	(0.59,1]	chr1	153175	2	CDS	CDS:EXON_MRNA	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11:ENST00000466127.1:ENST00000446534.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	50	2	1.74555	2.188845	2.63214	0.0444308	0.005622	0.165174	0.0421873
chr1	2307060	2307159	7376	0	+	0.343434	(0.33,0.36]	chr1	1667	4	UTR3	UTR3:EXON_MRNA	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	2.00765	2.188745	2.36984	0.0287001	0.00564505	0.128757	0.041184
chr3	179400324	179400423	4605533	0	-	0.353535	(0.33,0.36]	chr3	380149	44	UTR3	UTR3:EXON_MRNA	GNB4	ENSG00000114450.11	ENST00000232564.8:ENST00000676128.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	2.00765	2.188745	2.36984	0.0287001	0.00564505	0.128757	0.041184
chr11	85019189	85019289	12518006	0	-	0.3	(0.29,0.33]	chr11	971918	216	INTRON	INTRON	DLG2	ENSG00000150672.18	ENST00000376104.7:ENST00000650630.1:ENST00000527088.1	protein_coding	protein_coding	protein_coding	protein_coding	10	34	2	2.14085	2.188575	2.2363	0.0117968	0.00174802	0.0686664	0.0171052
chr5	109335583	109335680	6754747	0	-	0.309278	(0.29,0.33]	chr5	518800	10	UTR3	UTR3:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	11	36	2	1.55778	2.188375	2.81897	0.03577	2.43076e-4	0.147298	0.00367789
chr16	70261083	70261157	15996967	0	-	0.459459	(0.455,0.49]	chr16	1284625	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000567490.1:ENST00000569790.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	62	2	2.12005	2.1883600000000003	2.25667	0.00445666	7.52786e-4	0.0346553	0.00900324
chr1	27970931	27971030	911237	0	-	0.414141	(0.39,0.42]	chr1	95292	7	UTR3	UTR3:EXON_MRNA	EYA3	ENSG00000158161.16	ENST00000373871.8:ENST00000540618.5:ENST00000436342.6	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	1.99911	2.18835	2.37759	0.0477207	0.0428865	0.17993	0.161091
chr1	179919399	179919496	580817	0	+	0.402062	(0.39,0.42]	chr1	60267	13	UTR3	UTR3:EXON_MRNA	TOR1AIP1	ENSG00000143337.19	ENST00000528443.6:ENST00000606911.7:ENST00000435319.8	protein_coding	protein_coding	protein_coding	protein_coding	3	14	2	1.99911	2.18835	2.37759	0.0477207	0.0428865	0.17993	0.161091
chr15	89261662	89261741	15093700	0	+	0.392405	(0.39,0.42]	chr15	1187140	2	CDS	CDS:EXON_MRNA:INTRON	FANCI	ENSG00000140525.19	ENST00000674831.1:ENST00000300027.12:ENST00000567891.5:ENST00000310775.12:ENST00000676003.1:ENST00000565255.5:ENST00000564920.5:ENST00000447611.6:ENST00000567996.5:ENST00000563250.5:ENST00000565522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	14	2	1.99911	2.18835	2.37759	0.0477207	0.0428865	0.17993	0.161091
chr4	76130655	76130749	5475342	0	-	0.404255	(0.39,0.42]	chr4	438895	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUP54	ENSG00000138750.15	ENST00000507257.5:ENST00000508604.5:ENST00000264883.8:ENST00000502850.5:ENST00000508465.5:ENST00000514987.5:ENST00000512151.5:ENST00000504173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	14	2	1.99911	2.18835	2.37759	0.0477207	0.0428865	0.17993	0.161091
chr17	59694337	59694434	16295601	0	+	0.371134	(0.36,0.39]	chr17	1321774	6	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	70	2	2.02063	2.188345	2.35606	0.00306143	1.7167e-4	0.0271725	0.00279207
chr6	163573703	163573802	7540864	0	+	0.282828	[0,0.29]	chr6	575649	31	UTR3	UTR3:EXON_MRNA	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000361752.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	28	2	1.97252	2.188235	2.40395	0.0210081	0.00462732	0.101116	0.0353513
chr5	138558604	138558657	6862383	0	-	0.433962	(0.42,0.455]	chr5	525201	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2:ENST00000512328.1:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	39	2	1.7601	2.18809	2.61608	0.0312663	6.89843e-4	0.132093	0.00842607
chr20	62387338	62387388	17861409	0	+	0.62	(0.59,1]	chr20	1510048	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6:ENST00000370592.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	345	2	2.14165	2.188075	2.2345	3.80159e-4	2.38497e-4	0.00568558	0.00361237
chr5	163444828	163444922	6343440	0	+	0.244681	[0,0.29]	chr5	494014	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000393929.5:ENST00000340828.7:ENST00000509143.1:ENST00000509425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	82	2	2.01669	2.18779	2.35889	0.00128769	6.29096e-5	0.0141003	0.00124286
chr15	44716328	44716342	14899966	0	+	0.357143	(0.33,0.36]	chr15	1171707	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000559720.5:ENST00000561424.5:ENST00000559916.1:ENST00000648006.3:ENST00000349264.10:ENST00000557901.5:ENST00000559907.5:ENST00000560681.1:ENST00000559220.1:ENST00000561139.1:ENST00000560556.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	22	2	2.05855	2.18776	2.31697	0.018622	0.00966431	0.0952021	0.0606263
chr12	22687021	22687120	12786273	0	+	0.40404	(0.39,0.42]	chr12	993067	22	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	1.89145	2.18751	2.48357	0.0119663	0.00171404	0.0700178	0.017714
chr17	82079440	82079524	16710666	0	-	0.630952	(0.59,1]	chr17	1378131	2	CDS	CDS:UTR3:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000584610.2:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	68	2	1.83139	2.18748	2.54357	0.0225	0.00276959	0.106723	0.0240579
chr15	48342177	48342277	14921581	0	+	0.25	[0,0.29]	chr15	1173090	2	UTR3	UTR3:EXON_MRNA	DUT	ENSG00000128951.14	ENST00000558813.5:ENST00000331200.8:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	16	2	1.94841	2.18743	2.42645	0.0427374	0.0123114	0.168094	0.070688
chr3	31632934	31633005	3392464	0	+	0.408451	(0.39,0.42]	chr3	295093	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1:ENST00000488151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	41	2	1.9926	2.18723	2.38186	0.00601449	0.00367258	0.0434483	0.0300803
chr12	49764739	49764836	12869290	0	+	0.309278	(0.29,0.33]	chr12	999645	20	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000423828.5:ENST00000395006.8	protein_coding	protein_coding	protein_coding	protein_coding	33	98	2	1.69923	2.18719	2.67515	0.00288851	8.84018e-6	0.0257306	2.48724e-4
chr7	76303011	76303111	8343343	0	+	0.65	(0.59,1]	chr7	636372	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPB1	ENSG00000106211.10	ENST00000248553.7:ENST00000674965.1:ENST00000674638.1:ENST00000674547.1:ENST00000675226.1:ENST00000675538.1:ENST00000676231.1:ENST00000675134.1:ENST00000675906.1:ENST00000675733.1:ENST00000674560.1:ENST00000675624.1:ENST00000675488.1:ENST00000676398.1:ENST00000447574.1:ENST00000674650.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	115	2	1.59965	2.187125	2.7746	0.0213848	2.11789e-4	0.102792	0.00329129
chr7	12361443	12361521	8683279	0	-	0.410256	(0.39,0.42]	chr7	663995	2	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	1.75252	2.186915	2.62131	0.0297286	0.00609677	0.130016	0.0439136
chr2	9588246	9588328	2508199	0	-	0.426829	(0.42,0.455]	chr2	226362	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	74	2	2.14108	2.186845	2.23261	0.00130937	5.07675e-4	0.0143025	0.00660682
chr6	31828050	31828145	7116687	0	+	0.673684	(0.59,1]	chr6	546209	1	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	10	97	2	1.97731	2.1867	2.39609	0.00878719	0.00154869	0.0562439	0.0164839
chr3	14484866	14484907	3320830	0	+	0.585366	(0.53,0.59]	chr3	292285	1	CDS	CDS:UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5:ENST00000452151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	1.86855	2.18651	2.50447	0.0301162	0.0189167	0.130016	0.0934721
chr1	154253899	154253994	479970	0	+	0.431579	(0.42,0.455]	chr1	49671	1	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	12	55	2	1.87857	2.186345	2.49412	0.00949283	3.62613e-4	0.0596168	0.00507539
chr1	228494748	228494844	746496	0	+	0.510417	(0.49,0.53]	chr1	75813	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF187	ENSG00000168159.14	ENST00000305943.9:ENST00000482739.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	27	2	1.99044	2.1862399999999997	2.38204	0.0435903	0.0049129	0.170594	0.0366648
chr11	57761970	57762057	11952663	0	+	0.425287	(0.42,0.455]	chr11	914766	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TMX2-CTNND1:RP11-691N7.6:CTNND1	ENSG00000288534.1:ENSG00000254732.2:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000534647.2:ENST00000531074.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	18	2	1.86513	2.18581	2.50649	0.0357107	0.0302857	0.147298	0.130016
chr5	139683102	139683199	6250955	0	+	0.329897	(0.29,0.33]	chr5	487158	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000302517.8:ENST00000511048.1:ENST00000515038.1:ENST00000505812.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	28	2	1.74949	2.1858	2.62211	0.0162875	0.00310562	0.0866586	0.0274272
chr8	66922555	66922640	9866645	0	-	0.317647	(0.29,0.33]	chr8	745979	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG6	ENSG00000245910.8	ENST00000520348.5:ENST00000520944.5:ENST00000521399.5:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	25	74	2	1.84155	2.18573	2.52991	9.95701e-4	5.8581e-4	0.0111246	0.00794081
chr12	31280776	31280873	13279785	0	-	0.257732	[0,0.29]	chr12	1041229	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-627K11.6:SINHCAF	ENSG00000275097.1:ENSG00000139146.14	ENST00000622889.1:ENST00000337682.9:ENST00000539409.5:ENST00000448582.6	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	13	37	2	2.11113	2.18567	2.26021	0.00342811	0.00206871	0.0283582	0.0202834
chr20	34096656	34096730	17946010	0	-	0.378378	(0.36,0.39]	chr20	1519902	1	CDS	CDS:EXON_MRNA	EIF2S2	ENSG00000125977.7	ENST00000374980.3	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	2.08671	2.185455	2.2842	0.01635	0.0049656	0.0867615	0.0381176
chr5	132760601	132760701	6836987	0	-	0.5	(0.49,0.53]	chr5	523106	4	SS5_PROX	SS5_PROX:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	2.13501	2.185455	2.2359	0.0287874	0.00449268	0.128869	0.0343656
chr19	3981946	3981999	17430237	0	-	0.584906	(0.53,0.59]	chr19	1454720	1	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000598182.5:ENST00000598436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	37	204	2	1.99563	2.185415	2.3752	7.2118e-4	1.69645e-5	0.00907112	4.28575e-4
chr5	168510580	168510633	6369285	0	+	0.45283	(0.42,0.455]	chr5	494741	1	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	36	2	1.79995	2.18523	2.57051	0.0265466	0.00677326	0.120071	0.0468196
chr1	112913014	112913111	1232306	0	-	0.298969	(0.29,0.33]	chr1	120455	13	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	24	74	2	2.07277	2.185155	2.29754	4.64147e-4	4.54087e-4	0.00657273	0.00608573
chr17	59694919	59695016	16295607	0	+	0.340206	(0.33,0.36]	chr17	1321774	12	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	31	2	1.82006	2.18502	2.54998	0.0323353	0.00106635	0.135977	0.0118238
chr5	163491261	163491358	6343786	0	+	0.28866000000000003	[0,0.29]	chr5	494110	2	UTR3	UTR3:EXON_MRNA	HMMR	ENSG00000072571.20	ENST00000353866.7:ENST00000393915.9:ENST00000358715.3	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.96606	2.185005	2.40395	0.0210081	0.0100719	0.101116	0.0624353
chr22	37870175	37870261	18364601	0	+	0.44186	(0.42,0.455]	chr22	1562185	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000439997.5:ENST00000381683.10:ENST00000476955.5:ENST00000652021.1:ENST00000436452.6:ENST00000477256.5:ENST00000406934.5:ENST00000464790.1:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	82	2	1.81492	2.18497	2.55502	0.00912508	4.29716e-5	0.0578605	9.09876e-4
chr7	152135685	152135780	9134882	0	-	0.284211	[0,0.29]	chr7	698305	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000682824.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000684768.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000682137.1:ENST00000683502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	15	2	1.72144	2.184835	2.64823	0.0389538	0.0216669	0.158558	0.103121
chr4	22727758	22727854	5356442	0	-	0.40625	(0.39,0.42]	chr4	429643	5	EXON_PSEUDO	EXON_PSEUDO	CDC42P6	ENSG00000237350.1	ENST00000421246.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	45	2	2.09368	2.184355	2.27503	0.00324532	0.0025739	0.0271838	0.0235767
chr18	59328713	59328812	17142320	0	-	0.323232	(0.29,0.33]	chr18	1407602	10	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	18	64	2	1.65939	2.184325	2.70926	0.0164315	2.07245e-5	0.0873033	5.00582e-4
chr3	196049775	196049873	4663138	0	-	0.346939	(0.33,0.36]	chr3	385550	6	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	97	308	2	1.83651	2.18425	2.53199	1.85093e-4	6.56231e-7	0.00296795	3.09621e-5
chr19	46788504	46788594	17595603	0	-	0.688889	(0.59,1]	chr19	1481430	7	UTR5	UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	8	69	2	1.60816	2.18411	2.76006	0.0256592	0.00330486	0.117611	0.027613
chr18	12703107	12703164	16763343	0	+	0.649123	(0.59,1]	chr18	1382658	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	31	2	2.04362	2.184085	2.32455	0.0520547	0.036186	0.193787	0.145024
chr19	40366843	40366915	17328614	0	+	0.597222	(0.59,1]	chr19	1435549	2	CDS	CDS:EXON_MRNA	PLD3	ENSG00000105223.20	ENST00000599685.5:ENST00000392032.6:ENST00000409419.5:ENST00000409587.5:ENST00000602131.5:ENST00000409735.9:ENST00000356508.9:ENST00000594908.5:ENST00000596682.5:ENST00000409281.5:ENST00000493006.1:ENST00000359274.5:ENST00000485448.1:ENST00000492243.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	31	2	2.04362	2.184085	2.32455	0.0520547	0.036186	0.193787	0.145024
chr10	45455769	45455867	11467170	0	-	0.530612	(0.53,0.59]	chr10	874475	13	UTR3	UTR3:EXON_MRNA	MARCHF8	ENSG00000165406.16	ENST00000453424.7:ENST00000319836.7	protein_coding	protein_coding	protein_coding	protein_coding	4	25	2	1.90953	2.183985	2.45844	0.0517711	0.00930921	0.193577	0.0587563
chr22	38486196	38486277	18509621	0	-	0.530864	(0.53,0.59]	chr22	1579959	3	CDS	CDS:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	25	2	1.90953	2.183985	2.45844	0.0517711	0.00930921	0.193577	0.0587563
chr7	107160841	107160938	8455227	0	+	0.371134	(0.36,0.39]	chr7	645853	14	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	2.03744	2.1838100000000003	2.33018	0.00563874	0.0030776	0.0422191	0.0261799
chr2	61488679	61488771	2690456	0	-	0.423913	(0.42,0.455]	chr2	240349	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	35	2	1.96087	2.1837549999999997	2.40664	0.00983972	0.00445101	0.0615953	0.0340751
chrX	53378712	53378811	19076609	0	-	0.454545	(0.42,0.455]	chrX	1622486	47	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	2.1201	2.1837	2.2473	0.00744913	0.0048106	0.0492835	0.0371037
chr1	171670600	171670685	1368492	0	-	0.529412	(0.49,0.53]	chr1	139449	2	EXON_PSEUDO	EXON_PSEUDO	PFN1P1	ENSG00000233328.3	ENST00000442087.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	30	2	2.18239	2.18328	2.18417	0.024394	0.00578816	0.111797	0.0427749
chr3	177024702	177024802	4593474	0	-	0.27	[0,0.29]	chr3	379622	55	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	19	2	2.16074	2.18304	2.20534	0.0222978	0.0117033	0.105845	0.0685676
chr9	33352787	33352874	10632321	0	-	0.413793	(0.39,0.42]	chr9	803527	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200544.1	ENST00000363674.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	23	89	2	1.92426	2.18303	2.4418	0.00108421	1.54602e-4	0.011854	0.0028049
chr19	38729273	38729332	17323761	0	+	0.627119	(0.59,1]	chr19	1434382	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000497637.5:ENST00000477174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	82	2	1.63662	2.1830249999999998	2.72943	0.0410169	5.26629e-4	0.163285	0.00679103
chr14	64431531	64431585	14343941	0	+	0.462963	(0.455,0.49]	chr14	1121324	1	CDS	CDS:UTR3:EXON_MRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000555252.5:ENST00000555709.7:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000557370.3:ENST00000651537.1:ENST00000652509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	1.95898	2.18281	2.40664	0.047107	0.0123662	0.172269	0.0705839
chr22	21807663	21807754	18442838	0	-	0.373626	(0.36,0.39]	chr22	1572549	1	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	16	60	2	2.16673	2.1827449999999997	2.19876	0.00169226	7.72869e-4	0.0175793	0.00921437
chr6	32115838	32115903	7664392	0	-	0.569231	(0.53,0.59]	chr6	585969	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	37	2	1.64067	2.182725	2.72478	0.0285853	0.00324675	0.125848	0.0282494
chr5	113019423	113019522	6153953	0	+	0.373737	(0.36,0.39]	chr5	480731	61	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	10	46	2	1.85874	2.1827199999999998	2.5067	0.0415243	2.05751e-4	0.164804	0.00322749
chr11	46753309	46753403	12383579	0	-	0.5	(0.49,0.53]	chr11	956017	1	CDS	CDS:EXON_MRNA:PRIMIRNA	CKAP5:MIR5582	ENSG00000175216.15:ENSG00000263540.1	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000579697.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	6	29	2	1.76393	2.182545	2.60116	0.0279906	0.0056515	0.123926	0.0422191
chr9	92251807	92251880	10737148	0	-	0.424658	(0.42,0.455]	chr9	812280	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000683017.1:ENST00000682521.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1:ENST00000684594.1:ENST00000684267.1:ENST00000683477.1:ENST00000684328.1:ENST00000467876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	44	2	1.80241	2.1825200000000002	2.56263	0.0130341	9.19381e-4	0.072809	0.0104432
chr3	153164442	153164541	3818944	0	+	0.262626	[0,0.29]	chr3	325742	13	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	7	20	2	1.56356	2.1824500000000002	2.80134	0.0431251	0.0049344	0.161433	0.0379087
chr2	177215538	177215599	2228491	0	+	0.459016	(0.455,0.49]	chr2	203369	1	CDS	CDS:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000435711.5:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	20	2	2.12994	2.182365	2.23479	0.0304832	0.0209335	0.130204	0.101282
chr4	57025456	57025537	4851240	0	+	0.481481	(0.455,0.49]	chr4	399857	2	CDS	CDS:EXON_MRNA	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6:ENST00000478188.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	20	2	2.12994	2.182365	2.23479	0.0304832	0.0209335	0.130204	0.101282
chr10	68974669	68974743	11093319	0	+	0.378378	(0.36,0.39]	chr10	843276	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	1.66365	2.18231	2.70097	0.0345996	4.47648e-4	0.143631	0.00602369
chr11	32932640	32932740	11899053	0	+	0.4	(0.39,0.42]	chr11	909001	10	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	51	2	1.92471	2.181965	2.43922	0.00446637	9.01224e-4	0.0347231	0.0102618
chr6	31793052	31793120	7662562	0	-	0.691176	(0.59,1]	chr6	585338	2	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000440048.1	protein_coding	protein_coding	protein_coding	protein_coding	6	59	2	2.11642	2.181655	2.24689	0.0144884	0.00890458	0.0790431	0.0565003
chr17	81867908	81868002	16709691	0	-	0.680851	(0.59,1]	chr17	1377731	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ARHGDIA	ENSG00000141522.12	ENST00000269321.12:ENST00000582520.1:ENST00000400721.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	41	2	2.11894	2.1814549999999997	2.24397	0.0293157	0.0206682	0.128478	0.0997234
chr16	89561297	89561368	15810084	0	+	0.71831	(0.59,1]	chr16	1258671	2	CDS	CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	294	2	2.05854	2.181265	2.30399	6.40193e-4	2.27014e-4	0.0079527	0.00377434
chr8	41609804	41609879	9304054	0	+	0.453333	(0.42,0.455]	chr8	712120	3	CDS	CDS:EXON_MRNA	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000519853.5:ENST00000521806.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	2.03532	2.18094	2.32656	0.040947	0.00298867	0.163285	0.0255712
chr8	123328384	123328481	10056949	0	-	0.43299	(0.42,0.455]	chr8	756599	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5:ENST00000519124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	30	2	2.03532	2.18094	2.32656	0.040947	0.00298867	0.163285	0.0255712
chr1	156643910	156644008	1316241	0	-	0.571429	(0.53,0.59]	chr1	133856	24	EXON_LNCRNA	EXON_LNCRNA	RP11-284F21.10	ENSG00000272405.1	ENST00000605886.1	lncRNA	lncRNA	lncRNA	lncRNA	11	55	2	1.51729	2.180935	2.84458	0.0216731	5.21436e-4	0.104015	0.00674101
chr11	118786051	118786151	12625807	0	-	0.46	(0.455,0.49]	chr11	979594	1	CDS	CDS:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000526070.2:ENST00000525082.1:ENST00000531971.1:ENST00000533239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	27	2	1.72305	2.180885	2.63872	0.0324537	0.00510378	0.134899	0.0390492
chr1	157124642	157124741	1318789	0	-	0.363636	(0.36,0.39]	chr1	134399	36	UTR3	UTR3:EXON_MRNA	ETV3	ENSG00000117036.12	ENST00000368192.9	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.72655	2.18088	2.63521	0.033108	0.00633242	0.13754	0.0446708
chr3	88054883	88054981	4311707	0	-	0.377551	(0.36,0.39]	chr3	359651	31	UTR3	UTR3:EXON_MRNA	CGGBP1	ENSG00000163320.12	ENST00000309534.10:ENST00000482016.6:ENST00000398392.2	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.97546	2.18055	2.38564	0.0476159	0.0239316	0.17993	0.109927
chr5	55378399	55378486	5973701	0	+	0.344828	(0.33,0.36]	chr5	468349	2	CDS	CDS:UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	42	2	2.10839	2.1805149999999998	2.25264	0.00367014	0.0021650800000000002	0.0308215	0.0202102
chr17	28573278	28573360	16485910	0	-	0.536585	(0.53,0.59]	chr17	1347737	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	89	2	1.84411	2.1804799999999998	2.51685	0.00537983	1.23979e-4	0.0406579	0.00215269
chr5	55424772	55424861	5974179	0	+	0.370787	(0.36,0.39]	chr5	468407	1	UTR3	UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5:ENST00000508716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	37	2	1.57368	2.1803299999999997	2.78698	0.0292762	3.67531e-4	0.128453	0.00552242
chr11	61876865	61876963	12406262	0	-	0.571429	(0.53,0.59]	chr11	960680	1	CDS	CDS:EXON_MRNA	FADS3	ENSG00000221968.9	ENST00000527697.5:ENST00000533676.5:ENST00000278829.7:ENST00000529404.5:ENST00000527379.5:ENST00000525094.5:ENST00000525588.5:ENST00000531956.5:ENST00000534223.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	74	2	1.59701	2.1801500000000003	2.76329	0.0130723	1.32979e-4	0.0729985	0.00228677
chr5	149505541	149505595	6910352	0	-	0.37037	(0.36,0.39]	chr5	528487	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CSNK1A1	ENSG00000113712.19	ENST00000261798.10:ENST00000377843.8:ENST00000657001.1:ENST00000515768.6:ENST00000606719.6:ENST00000657462.1:ENST00000661952.1:ENST00000504676.5:ENST00000515435.5:ENST00000662268.1:ENST00000657706.1:ENST00000606826.5:ENST00000503350.6:ENST00000606299.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	30	2	1.87107	2.180145	2.48922	0.0110399	0.00923108	0.0652374	0.0583477
chr17	42843065	42843164	16230342	0	+	0.535354	(0.53,0.59]	chr17	1313600	16	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	14	74	2	1.97102	2.180025	2.38903	0.00222385	0.00113683	0.0205788	0.0129678
chr12	54232573	54232673	13342852	0	-	0.43	(0.42,0.455]	chr12	1049602	12	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	1.67452	2.179985	2.68545	0.0264395	0.00135767	0.117445	0.0146849
chr1	32810590	32810678	923839	0	-	0.465909	(0.455,0.49]	chr1	97374	1	CDS	CDS:EXON_MRNA:INTRON	YARS1	ENSG00000134684.12	ENST00000373477.9:ENST00000676297.1:ENST00000674654.1:ENST00000674629.1:ENST00000675785.1:ENST00000481895.6:ENST00000616261.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	24	2	2.08503	2.1799749999999998	2.27492	0.0193827	0.0158994	0.0943643	0.0856643
chr14	102012391	102012470	14495460	0	+	0.481013	(0.455,0.49]	chr14	1133097	2	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000645114.2:ENST00000643764.1:ENST00000643565.1:ENST00000644206.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	2.08503	2.1799749999999998	2.27492	0.0193827	0.0158994	0.0943643	0.0856643
chr5	150693218	150693307	6914615	0	-	0.47191	(0.455,0.49]	chr5	529232	1	CDS	CDS:EXON_MRNA	RBM22	ENSG00000086589.12	ENST00000199814.9:ENST00000520132.1:ENST00000447771.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.08503	2.1799749999999998	2.27492	0.0193827	0.0158994	0.0943643	0.0856643
chr17	49055553	49055652	16256702	0	+	0.333333	(0.33,0.36]	chr17	1317683	63	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	10	32	2	1.81451	2.179945	2.54538	0.0120734	0.00259294	0.0695634	0.0229695
chr1	28950041	28950141	119910	0	+	0.43	(0.42,0.455]	chr1	14578	349	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.93033	2.179855	2.42938	0.0505055	0.0045028	0.181202	0.0349711
chr7	1439579	1439676	8645281	0	-	0.42268	(0.42,0.455]	chr7	660635	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MICALL2	ENSG00000164877.19	ENST00000472100.5:ENST00000297508.8:ENST00000467783.1:ENST00000467394.5:ENST00000413446.5:ENST00000479007.5:ENST00000487156.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	1.93033	2.179855	2.42938	0.0505055	0.0045028	0.181202	0.0349711
chr16	2176574	2176671	15491256	0	+	0.649485	(0.59,1]	chr16	1227028	1	UTR3	UTR3:EXON_MRNA	TRAF7	ENSG00000131653.13	ENST00000326181.11	protein_coding	protein_coding	protein_coding	protein_coding	4	38	2	1.93269	2.1795400000000003	2.42639	0.0409084	0.0257004	0.163285	0.116399
chr19	39834763	39834813	17563487	0	-	0.62	(0.59,1]	chr19	1475729	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000595545.5:ENST00000593503.5:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	38	2	1.93269	2.1795400000000003	2.42639	0.0409084	0.0257004	0.163285	0.116399
chr9	5093650	5093748	10167537	0	+	0.377551	(0.36,0.39]	chr9	765714	22	INTRON	INTRON	JAK2	ENSG00000096968.14	ENST00000381652.4	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.66836	2.179355	2.69035	0.0474647	0.00123789	0.17993	0.013161
chr14	69771461	69771551	14375486	0	+	0.333333	(0.33,0.36]	chr14	1123315	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000556587.5:ENST00000555547.5:ENST00000556647.1:ENST00000554929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	24	2	1.72403	2.1792949999999998	2.63456	0.0238301	0.00707461	0.109562	0.0478528
chr18	2595415	2595483	16726246	0	+	0.352941	(0.33,0.36]	chr18	1379625	1	CDS	CDS:EXON_MRNA	NDC80	ENSG00000080986.13	ENST00000261597.9	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.72403	2.1792949999999998	2.63456	0.0238301	0.00707461	0.109562	0.0478528
chr5	79623330	79623409	6052969	0	+	0.379747	(0.36,0.39]	chr5	474945	2	CDS	CDS:EXON_MRNA	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000296783.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	1.72333	2.17927	2.63521	0.0514027	0.00633242	0.18321	0.0446708
chr9	120857643	120857743	10834151	0	-	0.56	(0.53,0.59]	chr9	820523	21	UTR3	UTR3:EXON_MRNA	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5	protein_coding	protein_coding	protein_coding	protein_coding	10	56	2	1.96946	2.179245	2.38903	0.0082201	0.00113683	0.0534646	0.0129678
chr1	44776593	44776674	174099	0	+	0.555556	(0.53,0.59]	chr1	22420	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000470475.1:ENST00000485390.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	37	2	1.49715	2.1790849999999997	2.86102	0.0455868	0.0017805	0.175638	0.0172974
chr5	151810406	151810505	6299830	0	+	0.434343	(0.42,0.455]	chr5	491960	50	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	32	2	1.54634	2.179045	2.81175	0.0338074	0.00227654	0.141431	0.0209546
chr6	36598915	36598983	7134561	0	+	0.617647	(0.59,1]	chr6	549592	2	CDS	CDS:UTR3:EXON_MRNA	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	105	2	1.86508	2.178955	2.49283	0.00977669	9.81573e-4	0.0611493	0.0116823
chr6	26056328	26056428	7646951	0	-	0.65	(0.59,1]	chr6	582504	1	CDS_START	CDS_START:CDS:EXON_MRNA	H1-2	ENSG00000187837.4	ENST00000343677.4	protein_coding	protein_coding	protein_coding	protein_coding	80	803	2	1.72362	2.178775	2.63393	0.00169056	5.79733e-6	0.0165634	1.92024e-4
chr8	47826792	47826861	9816027	0	-	0.652174	(0.59,1]	chr8	742585	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	84	2	1.61229	2.178755	2.74522	0.0434296	5.30049e-4	0.162491	0.00739367
chr14	73716002	73716100	14702325	0	-	0.469388	(0.455,0.49]	chr14	1151256	10	UTR3	UTR3:EXON_MRNA	MIDEAS	ENSG00000156030.13	ENST00000394071.6:ENST00000476562.5:ENST00000286523.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	32	2	2.0008	2.17862	2.35644	0.0129467	0.00555877	0.0724783	0.0405952
chr20	34507893	34507992	17765244	0	+	0.353535	(0.33,0.36]	chr20	1500386	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	26	2	2.17058	2.178605	2.18663	0.01664	0.00609632	0.0878065	0.043509
chr1	16395721	16395818	72953	0	+	0.371134	(0.36,0.39]	chr1	8467	7	UTR3	UTR3:EXON_MRNA	SZRD1	ENSG00000055070.17	ENST00000401089.3:ENST00000401088.9:ENST00000492354.1	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.02118	2.17859	2.336	0.0251625	0.0154226	0.117055	0.0834369
chr11	120487259	120487358	12169949	0	+	0.363636	(0.36,0.39]	chr11	938647	23	UTR3	UTR3:EXON_MRNA	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000532993.5	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.02118	2.17859	2.336	0.0251625	0.0154226	0.117055	0.0834369
chr9	93565326	93565424	10363317	0	+	0.336735	(0.33,0.36]	chr9	780189	9	UTR3	UTR3:EXON_MRNA	FAM120A	ENSG00000048828.17	ENST00000277165.11	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	1.82006	2.17859	2.53712	0.0323353	0.00766322	0.135977	0.0503696
chr8	60938196	60938295	9848278	0	-	0.434343	(0.42,0.455]	chr8	745037	6	EXON_PSEUDO	EXON_PSEUDO	NASPP1	ENSG00000255397.1	ENST00000529239.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	24	2	1.71996	2.178305	2.63665	0.0542346	0.0048172	0.199653	0.0365653
chr15	57992944	57993008	15305496	0	-	0.5	(0.49,0.53]	chr15	1208128	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000249750.9:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5:ENST00000560923.5:ENST00000559266.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	29	2	1.65324	2.178155	2.70307	0.0407792	0.00363585	0.163285	0.0298137
chr8	29055241	29055340	9250708	0	+	0.50505	(0.49,0.53]	chr8	708711	16	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	6	29	2	1.65324	2.178155	2.70307	0.0407792	0.00363585	0.163285	0.0298137
chr16	67865130	67865229	15712175	0	+	0.40404	(0.39,0.42]	chr16	1250686	1	CDS_START	CDS_START:CDS:EXON_MRNA	NUTF2	ENSG00000102898.12	ENST00000568390.5:ENST00000219169.9:ENST00000567105.5:ENST00000568233.5:ENST00000569436.6:ENST00000568396.2:ENST00000570026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	1.66154	2.1776400000000002	2.69374	0.0452475	0.00386013	0.174743	0.0310764
chr6	67882079	67882130	7784080	0	-	0.411765	(0.39,0.42]	chr6	596222	1	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1	lncRNA	lncRNA	lncRNA	lncRNA	46	159	2	1.26008	2.1776	3.09512	0.0117905	1.5154e-7	0.0690544	9.0076e-6
chr7	74194740	74194808	8334054	0	+	0.691176	(0.59,1]	chr7	634964	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	68	2	1.54039	2.1774899999999997	2.81459	0.031435	0.00278977	0.131481	0.0249234
chr1	229304003	229304103	747030	0	+	0.38	(0.36,0.39]	chr1	75889	3	UTR3	UTR3:EXON_MRNA	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	2.06832	2.177355	2.28639	0.0122123	0.00768469	0.0702898	0.050396
chr1	244856061	244856096	1591297	0	-	0.371429	(0.36,0.39]	chr1	158397	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1:ENST00000640119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	1.72333	2.17724	2.63115	0.0514027	0.0245975	0.18321	0.114841
chr12	76389644	76389736	13424690	0	-	0.391304	(0.39,0.42]	chr12	1056772	1	CDS	CDS:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8:ENST00000547540.5:ENST00000546946.5:ENST00000548535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	22	2	2.01081	2.17715	2.34349	0.0207537	0.0169272	0.100574	0.0890655
chr14	90404378	90404452	14455573	0	+	0.405405	(0.39,0.42]	chr14	1128580	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CALM1	ENSG00000198668.13	ENST00000557020.5:ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553630.1:ENST00000553542.5:ENST00000659177.1:ENST00000553964.5:ENST00000544280.6:ENST00000663135.1:ENST00000553422.1:ENST00000554296.1:ENST00000556721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	2.01081	2.17715	2.34349	0.0207537	0.0169272	0.100574	0.0890655
chr5	44811008	44811081	5961533	0	+	0.438356	(0.42,0.455]	chr5	467199	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6:ENST00000515647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	1.87159	2.17709	2.48259	0.0214479	0.0031851	0.102998	0.0267166
chr6	118907514	118907614	7358708	0	+	0.41	(0.39,0.42]	chr6	565267	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	ASF1A	ENSG00000111875.8	ENST00000229595.6	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	2.03292	2.17706	2.3212	0.00788976	0.00312058	0.0522564	0.0264364
chr19	38710256	38710342	17323548	0	+	0.55814	(0.53,0.59]	chr19	1434306	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	39	2	2.08252	2.176825	2.27113	0.0178853	0.0050389	0.0918323	0.0372588
chr18	45984331	45984431	17102847	0	-	0.38	(0.36,0.39]	chr18	1404258	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSTPIP2	ENSG00000152229.18	ENST00000409746.5:ENST00000589328.5:ENST00000588801.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	25	2	1.89703	2.1767950000000003	2.45656	0.0150863	0.0100637	0.0821417	0.0624019
chr5	111127078	111127176	6144713	0	+	0.510204	(0.49,0.53]	chr5	480259	3	UTR3	UTR3:EXON_MRNA	WDR36	ENSG00000134987.12	ENST00000506538.6:ENST00000612402.4:ENST00000513710.4	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.56396	2.17679	2.78962	0.0388812	0.0129044	0.158355	0.0725185
chr22	36467424	36467518	18499229	0	-	0.606383	(0.59,1]	chr22	1578324	5	UTR3	UTR3:EXON_MRNA	TXN2	ENSG00000100348.10	ENST00000216185.7:ENST00000416967.1	protein_coding	protein_coding	protein_coding	protein_coding	5	49	2	1.8502	2.17671	2.50322	0.0334531	0.00863444	0.140296	0.0556009
chr15	90883266	90883365	15103395	0	+	0.565657	(0.53,0.59]	chr15	1188584	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	41	2	1.97928	2.17665	2.37402	0.0218546	0.00230837	0.104785	0.0211205
chr10	72274216	72274316	11111164	0	+	0.67	(0.59,1]	chr10	845352	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	176	2	1.97795	2.17631	2.37467	0.0025767	3.85069e-4	0.023600200000000002	0.00531612
chr11	73677503	73677602	12457784	0	-	0.393939	(0.39,0.42]	chr11	968371	20	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5:ENST00000536566.5	protein_coding	protein_coding	protein_coding	protein_coding	13	56	2	2.03292	2.17618	2.31944	0.00788976	4.24978e-4	0.0522564	0.00576904
chr5	154815850	154815947	6315029	0	+	0.505155	(0.49,0.53]	chr5	492515	19	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	1.8541	2.176035	2.49797	0.0205565	0.00843736	0.0996997	0.0546021
chr11	57488915	57488989	12394715	0	-	0.5	(0.49,0.53]	chr11	958739	1	CDS	CDS:EXON_MRNA	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	2.13501	2.176015	2.21702	0.0287874	0.00959574	0.128869	0.0603269
chrX	39788044	39788136	19044759	0	-	0.51087	(0.49,0.53]	chrX	1618678	11	EXON_PSEUDO	EXON_PSEUDO	GAPDHP1	ENSG00000228232.1	ENST00000452570.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	32	2	1.56396	2.17595	2.78794	0.0388812	0.00251838	0.158355	0.0226599
chr17	28879522	28879616	16488313	0	-	0.56383	(0.53,0.59]	chr17	1348326	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FLOT2	ENSG00000132589.16	ENST00000394906.6:ENST00000394908.9:ENST00000580805.5:ENST00000577789.5:ENST00000585169.5:ENST00000584569.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	44	2	1.72504	2.17586	2.62668	0.0213174	0.00157636	0.102501	0.015761
chr5	32126011	32126111	6517512	0	-	0.39	(0.36,0.39]	chr5	504807	14	UTR3	UTR3:EXON_MRNA	GOLPH3	ENSG00000113384.14	ENST00000265070.7	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	2.02118	2.17568	2.33018	0.0251625	0.0030776	0.117055	0.0261799
chr2	96875979	96876078	2792351	0	-	0.626263	(0.59,1]	chr2	249281	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	80	739	2	2.03525	2.17565	2.31605	3.96745e-4	3.42593e-5	0.00588352	7.54383e-4
chrX	73827586	73827685	19113544	0	-	0.393939	(0.39,0.42]	chrX	1626115	60	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1:ENST00000666309.1:ENST00000665247.1:ENST00000433732.2	lncRNA	lncRNA	lncRNA	lncRNA	46	173	2	1.63605	2.17557	2.71509	0.00187626	1.16317e-6	0.0180513	4.9929e-5
chr18	51079563	51079663	16875306	0	+	0.34	(0.33,0.36]	chr18	1390033	12	UTR3	UTR3:EXON_MRNA	SMAD4	ENSG00000141646.14	ENST00000398417.6:ENST00000342988.8:ENST00000591126.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	2.07736	2.175355	2.27335	0.0442037	0.00837768	0.172163	0.0541213
chr8	38261155	38261254	9292754	0	+	0.353535	(0.33,0.36]	chr8	710795	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	DDHD2	ENSG00000085788.14	ENST00000397166.7:ENST00000520272.6:ENST00000517385.5:ENST00000526071.1:ENST00000529872.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	2.07736	2.175355	2.27335	0.0442037	0.00837768	0.172163	0.0541213
chr10	100362430	100362530	11219484	0	+	0.49	(0.455,0.49]	chr10	853930	16	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	43	180	2	2.06008	2.1750100000000003	2.28994	1.52904e-4	3.67817e-5	0.00254973	8.8592e-4
chr12	104265308	104265396	13058273	0	+	0.647727	(0.59,1]	chr12	1017573	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	TXNRD1:RPL18AP3	ENSG00000198431.16:ENSG00000213442.5	ENST00000525566.6:ENST00000429002.6:ENST00000526006.1:ENST00000462885.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	35	323	2	2.01442	2.17468	2.33494	0.00100164	1.06017e-4	0.011913	0.0018969
chr1	225920165	225920261	1531282	0	-	0.583333	(0.53,0.59]	chr1	153169	4	UTR3	UTR3:EXON_MRNA:INTRON	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	50	2	2.13589	2.174525	2.21316	0.00482336	0.00395526	0.0371856	0.0316946
chr5	140459163	140459259	6254392	0	+	0.385417	(0.36,0.39]	chr5	487516	1	CDS	CDS:UTR5:EXON_MRNA	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000532219.5:ENST00000394722.7:ENST00000490185.1:ENST00000246149.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	2.16717	2.174525	2.18188	0.0152504	0.00600314	0.0828908	0.042887
chrX	151408776	151408874	18909828	0	+	0.367347	(0.36,0.39]	chrX	1610139	39	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	1.43858	2.17439	2.9102	0.0581529	5.15161e-4	0.199345	0.00719513
chr1	226146126	226146222	1531749	0	-	0.322917	(0.29,0.33]	chr1	153270	16	UTR3	UTR3:EXON_MRNA	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.99403	2.174385	2.35474	0.0202925	0.00297618	0.098158	0.0254769
chr1	244854152	244854251	1591275	0	-	0.323232	(0.29,0.33]	chr1	158388	40	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	62	2	1.81236	2.1743550000000003	2.53635	0.00221645	3.3084e-4	0.0205155	0.00505107
chr18	9861377	9861475	16755660	0	+	0.387755	(0.36,0.39]	chr18	1381732	22	UTR3	UTR3:EXON_MRNA	RAB31	ENSG00000168461.13	ENST00000578921.6	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	2.1437	2.17407	2.20444	0.0340515	0.0237257	0.141465	0.109365
chr1	37692968	37693033	142583	0	+	0.569231	(0.53,0.59]	chr1	17796	2	CDS	CDS:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	5	31	2	1.90953	2.174025	2.43852	0.0517711	0.00373745	0.193577	0.0303359
chr7	100090398	100090487	8425346	0	+	0.550562	(0.53,0.59]	chr7	642460	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	COPS6	ENSG00000168090.10	ENST00000303904.8:ENST00000418625.5:ENST00000468499.5:ENST00000496358.1:ENST00000474823.5:ENST00000426712.1:ENST00000483891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	31	2	1.90953	2.174025	2.43852	0.0517711	0.00373745	0.193577	0.0303359
chr1	156525600	156525698	1315573	0	-	0.377551	(0.36,0.39]	chr1	133633	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.92623	2.173685	2.42114	0.0166541	0.00564641	0.0881353	0.0422191
chrX	71300204	71300298	18730898	0	+	0.457447	(0.455,0.49]	chrX	1598445	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	67	2	1.98867	2.173505	2.35834	0.00395226	3.329e-4	0.0322851	0.00472923
chr2	38482517	38482613	1748006	0	+	0.520833	(0.49,0.53]	chr2	169990	8	EXON_PSEUDO	EXON_PSEUDO	RPLP0P6	ENSG00000213553.4	ENST00000394878.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	91	2	2.0464	2.17347	2.30054	0.00281236	1.44709e-4	0.0251187	0.00243216
chr6	34240780	34240880	7124298	0	+	0.66	(0.59,1]	chr6	548242	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	HMGA1:MIR6835	ENSG00000137309.20:ENSG00000276404.1	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1:ENST00000374116.3:ENST00000621552.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	26	228	2	1.87129	2.17327	2.47525	0.00174091	2.49724e-4	0.0170385	0.00409455
chr1	175008608	175008706	559259	0	+	0.387755	(0.36,0.39]	chr1	58837	1	CDS	CDS:EXON_MRNA	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000367679.7:ENST00000473925.1:ENST00000405362.1:ENST00000469173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	54	2	1.561	2.1732449999999996	2.78549	0.0292256	5.70996e-5	0.129773	0.00114991
chr12	54292927	54293017	13343349	0	-	0.588889	(0.53,0.59]	chr12	1049646	6	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	8	45	2	2.08502	2.1729950000000002	2.26097	0.00828532	0.00389622	0.0543012	0.0313006
chr1	111460994	111461092	407355	0	+	0.367347	(0.36,0.39]	chr1	40192	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5PB	ENSG00000116459.11	ENST00000369722.8:ENST00000369721.8:ENST00000483994.1:ENST00000468818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	32	2	1.94692	2.17295	2.39898	0.0192083	0.00221341	0.0943643	0.0204985
chr15	101274591	101274681	15476066	0	-	0.4	(0.39,0.42]	chr15	1223458	1	CDS	CDS:EXON_MRNA	SELENOS	ENSG00000131871.15	ENST00000398226.7:ENST00000531964.5:ENST00000526043.1:ENST00000526049.6:ENST00000528346.1:ENST00000527833.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	21	2	1.84882	2.1729149999999997	2.49701	0.0339607	0.0214409	0.141431	0.102904
chr22	20507609	20507678	18298370	0	+	0.753623	(0.59,1]	chr22	1553407	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	51	2	1.96394	2.172755	2.38157	0.0453144	0.00534794	0.174798	0.0392783
chr22	19482689	19482758	18295388	0	+	0.304348	(0.29,0.33]	chr22	1552736	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CDC45	ENSG00000093009.11	ENST00000407835.6:ENST00000455750.6:ENST00000491520.5:ENST00000437685.6:ENST00000483431.5:ENST00000438587.6:ENST00000672837.1:ENST00000263201.7:ENST00000404724.7:ENST00000487669.5:ENST00000428937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	26	2	1.71387	2.172745	2.63162	0.0355849	0.00179843	0.147262	0.0174371
chr1	84656347	84656415	1131727	0	-	0.338235	(0.33,0.36]	chr1	112713	1	CDS	CDS:EXON_MRNA:INTRON	SSX2IP	ENSG00000117155.17	ENST00000342203.8:ENST00000437941.6:ENST00000481102.5:ENST00000476905.6:ENST00000605755.5:ENST00000603677.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	17	2	1.57909	2.172295	2.7655	0.0532274	0.0175892	0.184818	0.0918323
chr5	133972570	133972670	6843268	0	-	0.38	(0.36,0.39]	chr5	523565	8	UTR3	UTR3:EXON_MRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6	protein_coding	protein_coding	protein_coding	protein_coding	12	44	2	1.52435	2.172225	2.8201	0.0275954	1.26337e-4	0.122332	0.00239741
chr16	47497398	47497488	15644726	0	+	0.355556	(0.33,0.36]	chr16	1243333	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHKB	ENSG00000102893.16	ENST00000566037.6:ENST00000566044.5:ENST00000299167.12:ENST00000323584.10:ENST00000565424.2:ENST00000567402.5:ENST00000563376.5:ENST00000564873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	24	2	2.07736	2.172175	2.26699	0.0442037	0.00427416	0.172163	0.0332637
chr11	85957567	85957666	12525705	0	-	0.272727	[0,0.29]	chr11	972155	5	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	1.72806	2.17217	2.61628	0.0359089	0.0101434	0.144663	0.0626311
chr19	54206275	54206350	17390446	0	+	0.626667	(0.59,1]	chr19	1447212	1	CDS	CDS:EXON_MRNA:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	189	2	1.98232	2.17217	2.36202	0.00374977	2.18117e-4	0.031378	0.00337385
chr1	109228351	109228432	398010	0	+	0.469136	(0.455,0.49]	chr1	38560	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SARS1	ENSG00000031698.13	ENST00000234677.7:ENST00000477544.5:ENST00000369923.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	30	2	1.70534	2.1720300000000003	2.63872	0.0239221	0.00510378	0.109927	0.0390492
chr22	37225846	37225942	18503494	0	-	0.53125	(0.53,0.59]	chr22	1578938	7	UTR3	UTR3:EXON_MRNA	RAC2	ENSG00000128340.15	ENST00000249071.11:ENST00000406508.5	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.0728	2.171965	2.27113	0.0178853	0.0086901	0.0918323	0.0559355
chrX	71299941	71299976	18730894	0	+	0.571429	(0.53,0.59]	chrX	1598443	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000450092.6:ENST00000454976.2:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	34	2	2.0728	2.171965	2.27113	0.0178853	0.0086901	0.0918323	0.0559355
chr19	40765067	40765167	17330948	0	+	0.53	(0.49,0.53]	chr19	1436165	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SNRPA	ENSG00000077312.9	ENST00000243563.8:ENST00000601393.1:ENST00000596860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	47	2	1.86149	2.171755	2.48202	0.00938303	0.00138956	0.0590266	0.0143689
chr8	66922270	66922368	9866642	0	-	0.357143	(0.33,0.36]	chr8	745977	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG6	ENSG00000245910.8	ENST00000520348.5:ENST00000520944.5:ENST00000521399.5:ENST00000520619.1:ENST00000521127.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	25	84	2	2.00755	2.171695	2.33584	0.00111549	1.14149e-4	0.0127949	0.00202556
chr6	75255803	75255902	7800327	0	-	0.383838	(0.36,0.39]	chr6	597646	30	UTR3	UTR3:EXON_MRNA	TMEM30A	ENSG00000112697.17	ENST00000230461.11:ENST00000673730.1:ENST00000674104.1:ENST00000673989.1:ENST00000674151.1:ENST00000370050.9:ENST00000475111.6:ENST00000674038.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	24	2	2.01657	2.171675	2.32678	0.0193538	0.0118295	0.0943643	0.0692539
chr18	3255997	3256077	16729741	0	+	0.3625	(0.36,0.39]	chr18	1380105	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000578611.5:ENST00000536605.1:ENST00000580887.5:ENST00000578038.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	80	2	2.0435	2.1715999999999998	2.2997	0.00201835	1.4471e-4	0.0198129	0.00243216
chr22	21788256	21788322	18442638	0	-	0.454545	(0.42,0.455]	chr22	1572527	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	72	2	2.02042	2.171275	2.32213	0.00108241	0.00106343	0.0124971	0.0117998
chr1	16396981	16397078	72966	0	+	0.42268	(0.42,0.455]	chr1	8467	20	UTR3	UTR3:EXON_MRNA	SZRD1	ENSG00000055070.17	ENST00000401089.3:ENST00000401088.9:ENST00000492354.1	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.58956	2.1709300000000002	2.7523	0.0485703	0.0153283	0.175495	0.0828908
chr7	139307536	139307636	8565445	0	+	0.44	(0.42,0.455]	chr7	653581	98	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.58956	2.1709300000000002	2.7523	0.0485703	0.0153283	0.175495	0.0828908
chr12	103932278	103932333	13056747	0	+	0.345455	(0.33,0.36]	chr12	1017299	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	48	174	2	2.06264	2.1709050000000003	2.27917	5.47009e-4	1.20212e-5	0.00755458	3.19932e-4
chr11	66004054	66004149	11987303	0	+	0.368421	(0.36,0.39]	chr11	921245	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BANF1	ENSG00000175334.8	ENST00000445560.6:ENST00000524628.1:ENST00000312175.7:ENST00000533166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	33	2	1.81435	2.170905	2.52746	0.0302191	0.00115604	0.129773	0.0125677
chr11	66643740	66643837	11991534	0	+	0.57732000000000006	(0.53,0.59]	chr11	922205	4	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000421355.1:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000510173.6:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	1.87133	2.170665	2.47	0.0308819	0.0089333	0.130016	0.0567495
chr17	49052597	49052695	16256672	0	+	0.561224	(0.53,0.59]	chr17	1317683	33	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.96733	2.17066	2.37399	0.022694	0.0126178	0.105117	0.0717599
chr11	17075096	17075146	12295024	0	-	0.44	(0.42,0.455]	chr11	950293	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000531908.5:ENST00000531008.5:ENST00000525828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	27	112	2	1.9939	2.1706250000000002	2.34735	5.25773e-4	1.40713e-4	0.00678475	0.00258338
chr15	29700528	29700625	15183777	0	-	0.28866000000000003	[0,0.29]	chr15	1195074	13	UTR3	UTR3:EXON_MRNA	TJP1	ENSG00000104067.17	ENST00000346128.10:ENST00000614355.5:ENST00000400011.6:ENST00000356107.11	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	1.93716	2.1705550000000002	2.40395	0.0548436	0.0210081	0.189511	0.101116
chr15	49127259	49127357	15267101	0	-	0.265306	[0,0.29]	chr15	1204405	47	UTR3	UTR3:EXON_MRNA:INTRON	COPS2	ENSG00000166200.15	ENST00000560240.5:ENST00000388901.10:ENST00000299259.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	13	2	1.93716	2.1705550000000002	2.40395	0.0548436	0.0210081	0.189511	0.101116
chr21	37202150	37202246	18115585	0	+	0.291667	(0.29,0.33]	chr21	1536145	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	21	2	2.0986	2.1704299999999996	2.24226	0.0306054	0.00919301	0.130226	0.0581197
chr17	35725831	35725928	16207521	0	+	0.536082	(0.53,0.59]	chr17	1309154	23	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	60	2	1.57718	2.170235	2.76329	0.0353812	1.32979e-4	0.146532	0.00228677
chr18	3278111	3278199	16729917	0	+	0.329545	(0.29,0.33]	chr18	1380136	3	UTR3	UTR3:EXON_MRNA	MYL12B	ENSG00000118680.14	ENST00000648965.1:ENST00000237500.10:ENST00000581193.5:ENST00000400175.9:ENST00000584539.1	protein_coding	protein_coding	protein_coding	protein_coding	12	45	2	1.99415	2.170175	2.3462	0.0333928	2.70934e-4	0.140128	0.00404122
chr19	12944235	12944319	17238406	0	+	0.607143	(0.59,1]	chr19	1421071	4	UTR3	UTR3:EXON_MRNA	CALR	ENSG00000179218.15	ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	97	2	1.95813	2.170115	2.3821	0.00554753	0.00393503	0.0417049	0.0315593
chr6	119179043	119179140	7919319	0	-	0.319588	(0.29,0.33]	chr6	606471	20	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	20	59	2	1.80383	2.17009	2.53635	0.00271024	3.3084e-4	0.0237124	0.00505107
chr20	5119798	5119878	17887837	0	-	0.625	(0.59,1]	chr20	1514099	1	UTR5	UTR5:EXON_MRNA	PCNA	ENSG00000132646.11	ENST00000379160.3:ENST00000379143.10	protein_coding	protein_coding	protein_coding	protein_coding	7	63	2	1.78172	2.170045	2.55837	0.0185954	0.00709491	0.0933517	0.0479177
chr6	158766424	158766522	8043898	0	-	0.285714	[0,0.29]	chr6	614903	8	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	10	27	2	1.73193	2.169885	2.60784	0.0218934	0.00209281	0.104942	0.0196502
chr16	11841749	11841804	15856712	0	-	0.436364	(0.42,0.455]	chr16	1266790	2	CDS	CDS:UTR3:EXON_MRNA	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000574823.5:ENST00000570767.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	32	2	1.43354	2.16985	2.90616	0.0450749	0.00162359	0.167319	0.0169915
chrX	86019661	86019715	18752474	0	+	0.388889	(0.36,0.39]	chrX	1600313	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199567.1	ENST00000362697.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	11	36	2	1.57187	2.1698250000000003	2.76778	0.0154357	0.00365703	0.0835025	0.0307238
chr5	126836642	126836736	6202853	0	+	0.319149	(0.29,0.33]	chr5	483234	5	UTR3	UTR3:EXON_MRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	55	2	1.56693	2.169665	2.7724	0.0130656	6.68288e-5	0.0729807	0.00130254
chr16	98222	98301	15815431	0	-	0.582278	(0.53,0.59]	chr16	1259938	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NPRL3	ENSG00000103148.17	ENST00000611875.5:ENST00000622194.4:ENST00000621703.4:ENST00000399953.7:ENST00000473674.5:ENST00000457916.5:ENST00000483663.5:ENST00000422814.5:ENST00000468260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	30	2	2.0404	2.1691450000000003	2.29789	0.0362529	0.00674768	0.148525	0.0468196
chr14	69771642	69771733	14375488	0	+	0.296703	(0.29,0.33]	chr14	1123315	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000557154.6:ENST00000553635.5:ENST00000556587.5:ENST00000555547.5:ENST00000556647.1:ENST00000554929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	28	2	1.62619	2.16912	2.71205	0.0358231	0.00120479	0.147298	0.0129255
chr11	10805910	10806010	12272643	0	-	0.44	(0.42,0.455]	chr11	949024	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000531647.6:ENST00000532082.6:ENST00000524932.6:ENST00000534605.1:ENST00000532152.5:ENST00000527419.6:ENST00000531507.5:ENST00000525972.5:ENST00000528562.6:ENST00000532570.6:ENST00000530211.6:ENST00000527526.6:ENST00000530702.2:ENST00000525995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	44	2	1.722	2.16904	2.61608	0.0179091	6.89843e-4	0.0918323	0.00842607
chr1	31907003	31907100	921170	0	-	0.360825	(0.36,0.39]	chr1	96904	7	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	22	77	2	1.66096	2.16901	2.67706	0.00543819	3.21678e-5	0.0399219	7.88984e-4
chr11	17372412	17372512	11827951	0	+	0.51	(0.49,0.53]	chr11	905452	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	38	2	1.73918	2.168995	2.59881	0.0213952	0.00184545	0.102813	0.0178046
chr16	20736099	20736196	15883326	0	-	0.412371	(0.39,0.42]	chr16	1270412	26	UTR3	UTR3:EXON_MRNA:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	1.84882	2.1689499999999997	2.48908	0.0214409	0.0101318	0.102904	0.0626311
chr7	107160454	107160551	8455223	0	+	0.381443	(0.36,0.39]	chr7	645853	10	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	24	85	2	1.93351	2.168895	2.40428	0.00122378	1.14764e-4	0.0130695	0.00219095
chr12	111516235	111516317	13540499	0	-	0.695122	(0.59,1]	chr12	1065332	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000550236.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000481331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	89	2	1.83139	2.168735	2.50608	0.0225	8.51206e-4	0.106723	0.00993677
chr3	10311964	10312031	4032404	0	-	0.522388	(0.49,0.53]	chr3	338595	1	CDS	CDS:EXON_MRNA	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000397105.7:ENST00000482647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	53	2	2.03636	2.16869	2.30102	0.00653228	0.00108896	0.0454205	0.0118885
chr19	46609344	46609440	17357584	0	+	0.541667	(0.53,0.59]	chr19	1440686	3	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000599839.5:ENST00000596362.1:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	97	2	2.07524	2.168585	2.26193	0.00168938	3.22094e-4	0.0175529	0.0046122
chr1	96447127	96447226	366398	0	+	0.444444	(0.42,0.455]	chr1	35865	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	25	113	2	2.04305	2.16825	2.29345	0.00223689	5.7857e-5	0.0212908	0.0011651
chr1	220020065	220020143	1511208	0	-	0.333333	(0.33,0.36]	chr1	151080	2	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	63	2	1.50109	2.168015	2.83494	0.0389841	1.24303e-5	0.158669	3.29037e-4
chr2	10783679	10783775	2510716	0	-	0.385417	(0.36,0.39]	chr2	226661	4	UTR3	UTR3:EXON_MRNA	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000404371.6:ENST00000381611.8:ENST00000617249.4:ENST00000540494.5	protein_coding	protein_coding	protein_coding	protein_coding	16	64	2	1.73671	2.16799	2.59927	0.011685	6.90768e-5	0.0686664	0.00133649
chr21	8437539	8437639	18041919	0	+	0.71	(0.59,1]	chr21	1530900	45	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	6161	55501	2	1.91061	2.167955	2.4253	1.90519e-4	8.047e-6	0.00303483	2.51504e-4
chr17	40389964	40390064	16538742	0	-	0.42	(0.39,0.42]	chr17	1354553	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000578412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	61	2	1.88047	2.1679150000000003	2.45536	0.0102027	1.8019e-4	0.062872	0.00291352
chr3	41954659	41954759	4139316	0	-	0.4	(0.39,0.42]	chr3	345850	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ULK4	ENSG00000168038.11	ENST00000301831.9:ENST00000420927.5:ENST00000459802.5:ENST00000497684.1:ENST00000453224.5:ENST00000431379.5:ENST00000414606.1:ENST00000460978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	42	2	1.60776	2.16789	2.72802	0.0291807	3.73817e-4	0.129773	0.00520009
chr16	30067449	30067519	15628404	0	+	0.628571	(0.59,1]	chr16	1239782	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5:ENST00000564688.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	56	511	2	1.72471	2.167845	2.61098	0.00181886	1.53297e-5	0.0176016	4.30082e-4
chr4	48382727	48382819	4826418	0	+	0.521739	(0.49,0.53]	chr4	397715	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	38	2	1.94617	2.16776	2.38935	0.00934781	0.00488689	0.0589275	0.0376157
chr5	113015364	113015463	6153912	0	+	0.353535	(0.33,0.36]	chr5	480731	20	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3:ENST00000674880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	41	134	2	2.04418	2.16749	2.2908	1.52082e-4	7.6329e-5	0.00253675	0.0016015
chr11	61313915	61313969	12404038	0	-	0.5	(0.49,0.53]	chr11	960218	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000535147.5:ENST00000537877.5:ENST00000414411.3:ENST00000535967.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	2.11783	2.167425	2.21702	0.0142725	0.00959574	0.0780078	0.0603269
chr15	75371178	75371278	15376871	0	-	0.38	(0.36,0.39]	chr15	1215753	19	UTR3	UTR3:EXON_MRNA	SIN3A	ENSG00000169375.16	ENST00000394947.8:ENST00000360439.8:ENST00000394949.8	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.66365	2.167375	2.6711	0.0345996	0.00434596	0.143631	0.0335517
chr7	140834693	140834782	9111062	0	-	0.393258	(0.39,0.42]	chr7	695406	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1:ENST00000643790.1:ENST00000646427.1:ENST00000469930.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	43	2	1.66154	2.1670249999999998	2.67251	0.0452475	2.33616e-4	0.174743	0.00355764
chr1	156742395	156742490	1316752	0	-	0.547368	(0.53,0.59]	chr1	133965	4	UTR3	UTR3:EXON_MRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5	protein_coding	protein_coding	protein_coding	protein_coding	20	106	2	2.13028	2.1668950000000002	2.20351	6.08813e-4	5.62703e-4	0.00818575	0.00714634
chr17	42404296	42404394	16548228	0	-	0.632653	(0.59,1]	chr17	1357379	20	UTR3	UTR3:EXON_MRNA	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.81066	2.16608	2.5215	0.0369806	0.032241	0.145401	0.135671
chr5	141573849	141573939	6875640	0	-	0.6	(0.59,1]	chr5	526443	5	CDS	CDS:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.81066	2.16608	2.5215	0.0369806	0.032241	0.145401	0.135671
chr8	100919401	100919500	9976210	0	-	0.373737	(0.36,0.39]	chr8	752728	30	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	68	2	1.93185	2.165845	2.39984	0.00228225	2.61601e-4	0.0216712	0.0039188
chr5	134927345	134927443	6846867	0	-	0.459184	(0.455,0.49]	chr5	523926	8	EXON_PSEUDO	EXON_PSEUDO	MTND4P12	ENSG00000247627.2	ENST00000498999.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	51	2	1.92615	2.165615	2.40508	0.00372792	0.0022198	0.0302984	0.0211918
chr1	205791044	205791141	1462474	0	-	0.319588	(0.29,0.33]	chr1	147533	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC41A1	ENSG00000133065.11	ENST00000468057.5:ENST00000367137.4:ENST00000484228.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	26	2	1.98817	2.1651	2.34203	0.010113	0.00889512	0.0626311	0.0565003
chr3	32713226	32713297	3396020	0	+	0.352113	(0.33,0.36]	chr3	295329	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CNOT10	ENSG00000182973.19	ENST00000328834.9:ENST00000331889.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5:ENST00000454516.7:ENST00000485136.5:ENST00000416457.5:ENST00000455381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	18	2	1.8112	2.165035	2.51887	0.0358636	0.0257865	0.147298	0.116737
chr4	56446856	56446873	4848589	0	+	0.352941	(0.33,0.36]	chr4	399436	1	CDS	CDS:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.8112	2.165035	2.51887	0.0358636	0.0257865	0.147298	0.116737
chr1	20744500	20744599	883114	0	-	0.373737	(0.36,0.39]	chr1	91337	44	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	108	2	2.11889	2.165015	2.21114	2.61754e-4	1.97169e-4	0.00425805	0.00312846
chr2	99196100	99196199	1952301	0	+	0.353535	(0.33,0.36]	chr2	185459	5	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-111H13.1:MRPL30	ENSG00000241962.9:ENSG00000185414.20	ENST00000424491.5:ENST00000338148.8:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	39	2	2.10839	2.164705	2.22102	0.00736622	0.0021650800000000002	0.0490627	0.0202102
chr4	77047927	77048024	5479169	0	-	0.237113	[0,0.29]	chr4	439254	9	UTR3	UTR3:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9	protein_coding	protein_coding	protein_coding	protein_coding	41	112	2	1.96511	2.16467	2.36423	2.74985e-4	6.87255e-5	0.0040736	0.00145913
chr5	150444353	150444378	6914263	0	-	0.56	(0.53,0.59]	chr5	529149	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	1.78041	2.164425	2.54844	0.0407112	0.00663226	0.163285	0.0461575
chr6	43020822	43020912	7154614	0	+	0.566667	(0.53,0.59]	chr6	552425	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KLHDC3	ENSG00000124702.18	ENST00000244670.12:ENST00000326974.9:ENST00000332245.9	protein_coding	protein_coding	protein_coding	protein_coding	5	29	2	1.78041	2.164425	2.54844	0.0407112	0.00663226	0.163285	0.0461575
chr12	56724523	56724572	13352602	0	-	0.387755	(0.36,0.39]	chr12	1051862	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NACA:RP11-112B10.2	ENSG00000196531.14:ENSG00000285625.1	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000548563.5:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5:ENST00000551793.5:ENST00000551520.1:ENST00000548084.1:ENST00000647707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	51	2	1.78505	2.1643850000000002	2.54372	0.0228572	1.61961e-4	0.108215	0.00266296
chr11	61321645	61321697	12404123	0	-	0.538462	(0.53,0.59]	chr11	960234	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000537877.5:ENST00000535967.5:ENST00000539739.5:ENST00000540784.5:ENST00000545930.5:ENST00000681067.1:ENST00000680096.1:ENST00000535174.5:ENST00000539712.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	29	2	2.05734	2.1642349999999997	2.27113	0.0178853	0.0167029	0.0918323	0.0883198
chr1	114732745	114732816	1239756	0	-	0.43662	(0.42,0.455]	chr1	121396	3	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.63927	2.16416	2.68905	0.0455517	0.00119301	0.175554	0.0128249
chr17	38921271	38921371	16218437	0	+	0.42	(0.39,0.42]	chr17	1310821	26	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	2.02663	2.16359	2.30055	0.0130764	0.0070645	0.0729985	0.0477419
chr7	16706175	16706262	8149194	0	+	0.333333	(0.33,0.36]	chr7	622179	2	UTR3	UTR3:EXON_MRNA	BZW2	ENSG00000136261.15	ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000452975.6:ENST00000407633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	56	2	2.12497	2.16355	2.20213	0.00139338	9.37319e-4	0.0144011	0.0112692
chr11	67584133	67584169	11996964	0	+	0.583333	(0.53,0.59]	chr11	923161	1	CDS_START	CDS_START:CDS:EXON_MRNA	GSTP1	ENSG00000084207.18	ENST00000398603.6:ENST00000398606.10:ENST00000494593.1:ENST00000646888.1:ENST00000489040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	68	2	1.72707	2.163395	2.59972	0.015378	1.91269e-4	0.0833184	0.0032874
chr14	69886051	69886140	14688050	0	-	0.550562	(0.53,0.59]	chr14	1150336	9	EXON_PSEUDO	EXON_PSEUDO	RPL7AP6	ENSG00000242071.3	ENST00000477943.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	21	107	2	2.01275	2.1633899999999997	2.31403	0.00100221	5.61296e-4	0.011917	0.00712872
chr2	43977154	43977215	2623874	0	-	0.377049	(0.36,0.39]	chr2	236272	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000682779.1:ENST00000682885.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683802.1:ENST00000681961.1:ENST00000683989.1:ENST00000447246.2:ENST00000409659.6:ENST00000682104.1:ENST00000683934.1:ENST00000681959.1:ENST00000684482.1:ENST00000683082.1:ENST00000409946.6:ENST00000684329.1:ENST00000684691.1:ENST00000682496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	40	2	1.85874	2.163255	2.46777	0.0415243	4.3886e-4	0.164804	0.00591388
chr11	35809365	35809464	11910490	0	+	0.383838	(0.36,0.39]	chr11	910190	31	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	9	28	2	1.48542	2.1631549999999997	2.84089	0.026088	0.0128123	0.117079	0.0719798
chr22	41256190	41256290	18518997	0	-	0.53	(0.49,0.53]	chr22	1581137	1	CDS	CDS:EXON_MRNA	RANGAP1	ENSG00000100401.20	ENST00000356244.8:ENST00000405486.5:ENST00000455915.6:ENST00000446258.5	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.76393	2.16288	2.56183	0.0279906	0.0261296	0.123926	0.118976
chr9	74799894	74799976	10306981	0	+	0.573171	(0.53,0.59]	chr9	776164	1	EXON_SMALL	EXON_SMALL	RN7SKP47	ENSG00000202217.1	ENST00000365347.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	10	54	2	1.79717	2.162865	2.52856	0.0116438	0.00107225	0.0686664	0.0118238
chr1	109312948	109313047	1219459	0	-	0.353535	(0.33,0.36]	chr1	118935	35	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.80608	2.162475	2.51887	0.0416784	0.0358636	0.157445	0.147298
chr20	34384164	34384214	17946993	0	-	0.4	(0.39,0.42]	chr20	1520016	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201498.1	ENST00000364628.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	13	48	2	1.43377	2.1620850000000003	2.8904	0.0261859	1.70949e-4	0.117079	0.00301144
chr15	41480885	41480984	14887013	0	+	0.515152	(0.49,0.53]	chr15	1169493	3	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.14	ENST00000389629.8	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.8541	2.16184	2.46958	0.0205565	0.00344146	0.0996997	0.0292838
chr2	152670230	152670305	2944196	0	-	0.426667	(0.42,0.455]	chr2	261588	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.99701	2.16165	2.32629	0.0235036	0.0153564	0.111072	0.0832114
chr5	146171909	146171990	6891661	0	-	0.444444	(0.42,0.455]	chr5	527589	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1:ENST00000618084.2:ENST00000511505.5:ENST00000505223.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	49	2	2.04128	2.161425	2.28157	0.00699169	0.0012159	0.0475909	0.0130129
chrX	54810820	54810897	18705011	0	+	0.571429	(0.53,0.59]	chrX	1596153	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MAGED2	ENSG00000102316.17	ENST00000375053.6:ENST00000627068.2:ENST00000375068.6:ENST00000347546.8:ENST00000463787.5:ENST00000218439.8:ENST00000375060.5:ENST00000375058.5:ENST00000396224.1:ENST00000497484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	23	2	1.96733	2.16122	2.35511	0.0445399	0.022694	0.172163	0.105117
chr1	226370433	226370517	1533114	0	-	0.559524	(0.53,0.59]	chr1	153445	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PARP1	ENSG00000143799.14	ENST00000678226.1:ENST00000678288.1:ENST00000677985.1:ENST00000677189.1:ENST00000366794.10:ENST00000677203.1:ENST00000677884.1:ENST00000678560.1:ENST00000677091.1:ENST00000678144.1:ENST00000676565.1:ENST00000678781.1:ENST00000676685.1:ENST00000679276.1:ENST00000676709.1:ENST00000498787.2:ENST00000490921.5:ENST00000677374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	35	2	1.88327	2.160895	2.43852	0.0298124	0.00373745	0.129773	0.0303359
chr15	90966653	90966748	15439136	0	-	0.389474	(0.36,0.39]	chr15	1221337	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000560423.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	39	2	1.11912	2.1605499999999997	3.20198	0.0581272	4.4092e-4	0.199306	0.0062930699999999996
chr17	29261038	29261138	16490879	0	-	0.42	(0.39,0.42]	chr17	1348880	53	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.93908	2.16047	2.38186	0.0154765	0.00601449	0.0836906	0.0434483
chr10	69198371	69198461	11094892	0	+	0.488889	(0.455,0.49]	chr10	843524	1	CDS	CDS:EXON_MRNA	SUPV3L1	ENSG00000156502.14	ENST00000359655.9:ENST00000422378.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.96875	2.160445	2.35214	0.0480352	0.0455621	0.180552	0.168044
chr11	66617650	66617736	11991258	0	+	0.465116	(0.455,0.49]	chr11	922153	1	SS5_PROX	SS5_PROX:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000393979.3:ENST00000511114.1:ENST00000310137.5:ENST00000409372.1:ENST00000421355.1:ENST00000443702.1:ENST00000500635.2:ENST00000409738.4:ENST00000460762.1:ENST00000461478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	15	2	1.96875	2.160445	2.35214	0.0480352	0.0455621	0.180552	0.168044
chr17	40171979	40172075	16223511	0	+	0.489583	(0.455,0.49]	chr17	1311972	17	UTR3	UTR3:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	1.96875	2.160445	2.35214	0.0480352	0.0455621	0.180552	0.168044
chr19	39306953	39307050	17562838	0	-	0.494845	(0.49,0.53]	chr19	1475511	5	UTR3	UTR3:EXON_MRNA	LRFN1	ENSG00000128011.5	ENST00000248668.5	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.78308	2.16029	2.5375	0.0425234	0.00104367	0.167547	0.0115928
chr10	58388189	58388260	11057784	0	+	0.366197	(0.36,0.39]	chr10	841611	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TFAM	ENSG00000108064.11	ENST00000373899.3:ENST00000487519.6:ENST00000373895.7:ENST00000395377.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	25	2	1.85874	2.16025	2.46176	0.0415243	0.00365867	0.164804	0.0299719
chr7	5606261	5606359	8112130	0	+	0.663265	(0.59,1]	chr7	620041	9	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	108	2	2.0256	2.16024	2.29488	0.00407435	0.0028918	0.0324137	0.0248106
chr7	128862904	128863004	8522580	0	+	0.6	(0.59,1]	chr7	650487	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP6V1F	ENSG00000128524.5	ENST00000249289.5:ENST00000492758.1	protein_coding	protein_coding	protein_coding	protein_coding	7	67	2	2.11642	2.1600200000000003	2.20362	0.0144884	0.00565413	0.0790431	0.0412424
chr2	113934332	113934386	2006882	0	+	0.481481	(0.455,0.49]	chr2	190770	2	CDS	CDS:UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000415792.5:ENST00000446821.5:ENST00000535589.3:ENST00000489779.1:ENST00000484165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	28	2	2.04847	2.1599950000000003	2.27152	0.0192065	0.00786769	0.0943643	0.0514287
chr3	14486783	14486881	3320850	0	+	0.479592	(0.455,0.49]	chr3	292287	19	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	28	2	2.04847	2.1599950000000003	2.27152	0.0192065	0.00786769	0.0943643	0.0514287
chr9	35100034	35100134	10638449	0	-	0.52	(0.49,0.53]	chr9	804681	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	STOML2	ENSG00000165283.16	ENST00000452248.6:ENST00000619795.4:ENST00000356493.10:ENST00000488050.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	24	2	1.93897	2.15997	2.38097	0.0425419	0.0151118	0.167547	0.0820541
chr11	75400366	75400390	12023043	0	+	0.375	(0.36,0.39]	chr11	926962	1	SS3_PROX	SS3_PROX:INTRON	RPS3	ENSG00000149273.15	ENST00000529173.5:ENST00000531188.6:ENST00000528439.5:ENST00000530721.5:ENST00000530164.5:ENST00000422465.6:ENST00000532872.5:ENST00000278572.10:ENST00000527446.5:ENST00000534440.5:ENST00000526608.5:ENST00000527273.5:ENST00000524851.5:ENST00000526248.5:ENST00000529285.5:ENST00000534555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	20	2	1.89872	2.15993	2.42114	0.056542	0.00564641	0.19417	0.0422191
chrX	3891040	3891139	18932696	0	-	0.373737	(0.36,0.39]	chrX	1613506	89	INTRON	INTRON	RP11-706O15.1	ENSG00000285756.2	ENST00000648217.1:ENST00000650456.1:ENST00000650538.1	lncRNA	lncRNA	lncRNA	lncRNA	5	20	2	1.89872	2.15993	2.42114	0.056542	0.00564641	0.19417	0.0422191
chr10	102162363	102162457	11226683	0	+	0.404255	(0.39,0.42]	chr10	854877	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	47	2	2.04049	2.159585	2.27868	0.00344932	0.00209079	0.0293482	0.0196408
chr7	44578586	44578685	8800218	0	-	0.484848	(0.455,0.49]	chr7	671335	8	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	12	52	2	1.34517	2.15957	2.97397	0.0438219	8.30118e-5	0.171235	0.00156827
chr3	47590748	47590837	4161789	0	-	0.606742	(0.59,1]	chr3	348309	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000492896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	81	2	1.89703	2.15951	2.42199	0.00861577	0.00475078	0.0555319	0.0367332
chr20	32195760	32195858	17941028	0	-	0.469388	(0.455,0.49]	chr20	1519244	34	UTR3	UTR3:EXON_MRNA	PLAGL2	ENSG00000126003.7	ENST00000246229.5	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.95898	2.15935	2.35972	0.047107	0.0058634	0.172269	0.0427941
chr3	184300279	184300361	3948992	0	+	0.487805	(0.455,0.49]	chr3	332290	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSMD2	ENSG00000175166.17	ENST00000417952.5:ENST00000459910.5:ENST00000487475.5:ENST00000310118.9:ENST00000492191.5:ENST00000433010.5:ENST00000476461.1:ENST00000445558.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.95898	2.15935	2.35972	0.047107	0.0058634	0.172269	0.0427941
chr19	35155550	35155611	17303744	0	+	0.590164	(0.59,1]	chr19	1430586	1	CDS_START	CDS_START:CDS:EXON_MRNA	FXYD5	ENSG00000089327.15	ENST00000543307.5:ENST00000392218.6:ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	64	2	2.01236	2.159295	2.30623	0.0170607	0.00765638	0.0896731	0.0503696
chr16	2765206	2765304	15494927	0	+	0.5	(0.49,0.53]	chr16	1227802	38	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000576674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	70	2	1.31045	2.15908	3.00771	0.0234528	6.70462e-5	0.10837	0.00142579
chr7	128081359	128081430	8519259	0	+	0.633803	(0.59,1]	chr7	649788	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	SND1:MIR593	ENSG00000197157.11:ENSG00000207588.1	ENST00000354725.8:ENST00000486037.1:ENST00000470723.5:ENST00000470463.1:ENST00000384856.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	21	194	2	2.0449	2.15892	2.27294	0.00282625	3.08591e-4	0.0252363	0.00445935
chrM	7156	7252	19377209	0	+	0.520833	(0.49,0.53]	chrM	1649805	13	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	171	753	2	1.98015	2.158875	2.3376	4.21172e-5	1.93924e-6	8.94662e-4	7.68752e-5
chr5	33467559	33467608	5927523	0	+	0.387755	(0.36,0.39]	chr5	464455	1	CDS	CDS:UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000503422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	36	2	1.68642	2.158785	2.63115	0.0245975	0.00774448	0.114841	0.0507639
chr5	10434669	10434768	5875544	0	+	0.464646	(0.455,0.49]	chr5	462061	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	44	2	2.13079	2.158765	2.18674	0.00422749	0.0034804	0.0329189	0.0295021
chr12	54239259	54239359	13342919	0	-	0.4	(0.39,0.42]	chr12	1049602	79	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	2.01677	2.1586600000000002	2.30055	0.0235818	0.0070645	0.111323	0.0477419
chr11	77637614	77637714	12473732	0	-	0.66	(0.59,1]	chr11	970338	1	CDS_START	CDS_START:CDS:EXON_MRNA	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	85	2	1.78172	2.158625	2.53553	0.0185954	0.00134354	0.0933517	0.014003
chr6	135195832	135195917	7414855	0	+	0.576471	(0.53,0.59]	chr6	568297	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYB	ENSG00000118513.19	ENST00000341911.10:ENST00000442647.7:ENST00000316528.12:ENST00000616088.4:ENST00000339290.9:ENST00000367812.6:ENST00000463282.6:ENST00000525477.5:ENST00000533837.5:ENST00000618728.4:ENST00000367814.8:ENST00000527615.5:ENST00000525369.5:ENST00000438901.6:ENST00000525514.5:ENST00000526320.5:ENST00000526889.5:ENST00000529586.5:ENST00000531519.5:ENST00000533808.5:ENST00000528343.5:ENST00000524588.5:ENST00000525002.5:ENST00000525940.5:ENST00000526187.5:ENST00000526565.5:ENST00000528015.5:ENST00000528140.5:ENST00000528345.5:ENST00000528774.5:ENST00000529262.5:ENST00000531634.5:ENST00000531737.5:ENST00000533384.5:ENST00000533624.5:ENST00000534044.5:ENST00000534121.5:ENST00000531845.5:ENST00000534736.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	46	2	1.78852	2.1585400000000003	2.52856	0.0249781	0.00107225	0.116495	0.0118238
chr1	109354448	109354531	1219892	0	-	0.433735	(0.42,0.455]	chr1	119020	2	CDS	CDS:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000493736.5:ENST00000482236.5	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	2.1201	2.15842	2.19674	0.0254904	0.00744913	0.117089	0.0492835
chr1	26772565	26772632	110923	0	+	0.552239	(0.53,0.59]	chr1	13317	2	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1:ENST00000636110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	22	2	1.65775	2.1583449999999997	2.65894	0.0573191	0.0193255	0.196623	0.0943643
chr12	53309660	53309721	13338813	0	-	0.57377	(0.53,0.59]	chr12	1049047	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	AAAS	ENSG00000094914.14	ENST00000548931.6:ENST00000552876.5:ENST00000549450.6:ENST00000394384.7:ENST00000550286.5:ENST00000209873.9:ENST00000547757.2:ENST00000546562.6:ENST00000672797.1:ENST00000547238.6:ENST00000547520.6:ENST00000552161.6:ENST00000548880.2:ENST00000550033.5:ENST00000672900.1:ENST00000546393.7:ENST00000546572.1:ENST00000547761.6:ENST00000549983.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	22	2	1.65775	2.1583449999999997	2.65894	0.0573191	0.0193255	0.196623	0.0943643
chr2	85321082	85321181	2770121	0	-	0.515152	(0.49,0.53]	chr2	245643	32	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	11	47	2	1.5639	2.158025	2.75215	0.0185114	8.79689e-4	0.0948661	0.0107294
chr2	167887551	167887651	2998504	0	-	0.36	(0.33,0.36]	chr2	265450	172	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	8	28	2	1.80608	2.158025	2.50997	0.0416784	9.74806e-4	0.157445	0.0116117
chr21	8437043	8437142	18041914	0	+	0.656566	(0.59,1]	chr21	1530900	40	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	1404	12933	2	1.8672	2.1578150000000003	2.44843	2.6505e-4	7.25519e-6	0.00395787	2.31679e-4
chr20	2463088	2463157	17878945	0	-	0.710145	(0.59,1]	chr20	1512825	1	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	59	2	2.03921	2.1578	2.27639	0.0371471	0.00420132	0.151849	0.0328662
chr1	151759807	151759887	1293782	0	-	0.475	(0.455,0.49]	chr1	129406	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPL9	ENSG00000143436.11	ENST00000368830.8:ENST00000467306.5:ENST00000468006.1:ENST00000368829.3:ENST00000495867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	32	2	1.64975	2.15769	2.66563	0.0228527	0.0043075	0.108215	0.0334284
chr17	38855580	38855670	16217909	0	+	0.433333	(0.42,0.455]	chr17	1310770	4	EXON_PSEUDO	EXON_PSEUDO	RPS20P35	ENSG00000244086.1	ENST00000462007.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	59	2	1.93968	2.15768	2.37568	0.00346151	8.0114e-4	0.0286293	0.00996644
chr4	24548854	24548938	5358921	0	-	0.452381	(0.42,0.455]	chr4	429858	1	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	1.40915	2.157655	2.90616	0.0332782	0.00162359	0.137922	0.0169915
chr18	13760763	13760861	16770190	0	+	0.367347	(0.36,0.39]	chr18	1383302	9	UTR3	UTR3:EXON_MRNA:INTRON	RNMT	ENSG00000101654.18	ENST00000588457.5:ENST00000383314.7:ENST00000592764.5:ENST00000262173.7:ENST00000593007.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	20	2	1.85874	2.1576500000000003	2.45656	0.0415243	0.0100637	0.164804	0.0624019
chr12	57056824	57056922	13353741	0	-	0.44898	(0.42,0.455]	chr12	1052211	13	UTR3	UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.84101	2.1574	2.47379	0.0352234	0.00996858	0.142054	0.0621728
chrX	115718941	115719037	19185327	0	-	0.447917	(0.42,0.455]	chrX	1631182	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	DANT2:SUMO2P21	ENSG00000235244.4:ENSG00000228532.4	ENST00000664453.1:ENST00000536192.3	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	4	19	2	1.95205	2.15726	2.36247	0.0462889	0.0248244	0.176878	0.113644
chr1	228097652	228097715	744027	0	+	0.619048	(0.59,1]	chr1	75093	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:PRIMIRNA	ARF1:MIR3620	ENSG00000143761.16:ENSG00000284163.1	ENST00000540651.5:ENST00000272102.10:ENST00000470670.5:ENST00000478424.5:ENST00000470558.5:ENST00000473949.5:ENST00000477451.5:ENST00000478336.5:ENST00000541182.1:ENST00000469235.5:ENST00000482962.5:ENST00000497165.5:ENST00000584469.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:processed_transcript:primary_miRNA	10	88	2	1.89154	2.156765	2.42199	0.00669054	0.00475078	0.0465167	0.0367332
chr11	9408605	9408639	11792495	0	+	0.441176	(0.42,0.455]	chr11	902820	1	CDS	CDS:UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	31	2	2.15137	2.156755	2.16214	0.0123864	0.00696724	0.07101	0.0474632
chr21	29056474	29056552	18201936	0	-	0.487179	(0.455,0.49]	chr21	1544699	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000432178.5:ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	66	2	1.80901	2.15671	2.50441	0.00693404	2.04429e-4	0.0473133	0.00320878
chr2	167933207	167933307	2998962	0	-	0.41	(0.39,0.42]	chr2	265456	321	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	4	18	2	2.13132	2.156435	2.18155	0.02908	0.0283931	0.127654	0.127648
chr8	29060782	29060882	9250766	0	+	0.41	(0.39,0.42]	chr8	708717	42	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000522468.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	4	18	2	2.13132	2.156435	2.18155	0.02908	0.0283931	0.127654	0.127648
chr12	54235866	54235966	13342885	0	-	0.37	(0.36,0.39]	chr12	1049602	45	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	1.78505	2.156255	2.52746	0.0228572	0.00115604	0.108215	0.0125677
chr17	82080139	82080219	16710675	0	-	0.6	(0.59,1]	chr17	1378135	1	CDS	CDS:UTR3:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	68	2	1.7297	2.156195	2.58269	0.016326	0.0067313	0.0867237	0.0461258
chr6	27892952	27893049	7649681	0	-	0.680412	(0.59,1]	chr6	582847	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	H3C12:H2AC17	ENSG00000197153.5:ENSG00000278677.2	ENST00000479986.1:ENST00000359611.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	143	2	1.89154	2.155885	2.42023	0.00669054	4.43106e-4	0.0465167	0.0063176
chrX	53537555	53537625	19077200	0	-	0.457143	(0.455,0.49]	chrX	1622654	1	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000480438.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	24	2	2.12994	2.1556100000000002	2.18128	0.0304832	0.0111696	0.130204	0.0665375
chr6	85612684	85612782	7825775	0	-	0.326531	(0.29,0.33]	chr6	599558	51	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	24	2	2.0686	2.15543	2.24226	0.0306054	0.00628604	0.130226	0.0446912
chr15	41377195	41377249	14886218	0	+	0.314815	(0.29,0.33]	chr15	1169376	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5:ENST00000560898.5:ENST00000560318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	40	2	2.14085	2.1549300000000002	2.16901	0.0117968	0.00113359	0.0686664	0.0123324
chr16	31191521	31191605	15633488	0	+	0.357143	(0.33,0.36]	chr16	1241226	2	UTR3	UTR3:EXON_MRNA	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000569760.5:ENST00000483853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	38	2	1.89429	2.15485	2.41541	0.00643718	0.00212038	0.0452349	0.0198025
chr1	186359897	186359996	1412230	0	-	0.333333	(0.33,0.36]	chr1	142967	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	43	2	2.05144	2.1547099999999997	2.25798	0.00903135	9.56361e-4	0.0573114	0.010724
chr11	32600760	32600832	11898294	0	+	0.361111	(0.36,0.39]	chr11	908927	2	CDS	CDS:UTR3:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531120.6:ENST00000525782.5:ENST00000524896.5:ENST00000524711.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	94	2	1.54838	2.154705	2.76103	0.038399	3.22182e-6	0.15648	1.07321e-4
chr12	51059533	51059632	12876166	0	+	0.555556	(0.53,0.59]	chr12	1000594	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LETMD1	ENSG00000050426.16	ENST00000547318.5:ENST00000550929.5:ENST00000262055.9:ENST00000547555.5:ENST00000418425.6:ENST00000547008.5:ENST00000547877.5:ENST00000380135.7:ENST00000550100.5:ENST00000552739.5:ENST00000548516.5:ENST00000552645.5:ENST00000547256.1:ENST00000546814.1:ENST00000551931.5:ENST00000550274.1:ENST00000553043.1:ENST00000549395.1:ENST00000623495.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:TEC:processed_transcript	4	24	2	2.14885	2.15461	2.16037	0.0262993	0.0254312	0.117164	0.117089
chr2	96185251	96185350	2789813	0	-	0.424242	(0.42,0.455]	chr2	248609	5	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	47	2	2.09984	2.15426	2.20868	0.00482959	0.0019911	0.036611200000000003	0.019572
chr15	41380570	41380666	14886253	0	+	0.375	(0.36,0.39]	chr15	1169383	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	65	2	1.561	2.153845	2.74669	0.0292256	2.39303e-5	0.129773	5.64874e-4
chr10	87245356	87245456	11605720	0	-	0.39	(0.36,0.39]	chr10	883844	53	EXON_LNCRNA	EXON_LNCRNA:INTRON	NUTM2A-AS1	ENSG00000223482.8	ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000663644.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.6:ENST00000433920.5:ENST00000447424.5:ENST00000666515.1:ENST00000663113.1:ENST00000667520.1	lncRNA	lncRNA	lncRNA	lncRNA	6	24	2	2.02118	2.153785	2.28639	0.0251625	0.00768469	0.117055	0.050396
chr2	152671326	152671381	2944209	0	-	0.381818	(0.36,0.39]	chr2	261594	2	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.02118	2.153785	2.28639	0.0251625	0.00768469	0.117055	0.050396
chr11	61329510	61329584	12404217	0	-	0.608108	(0.59,1]	chr11	960274	3	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000681935.1:ENST00000680250.1:ENST00000540166.5:ENST00000679855.1:ENST00000681368.1:ENST00000543658.5:ENST00000681067.1:ENST00000680096.1:ENST00000543162.2:ENST00000537120.5:ENST00000539426.5:ENST00000538129.1:ENST00000542337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.88006	2.153225	2.42639	0.0554008	0.0409084	0.191173	0.163285
chr14	102032271	102032369	14495696	0	+	0.602041	(0.59,1]	chr14	1133192	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.88006	2.153225	2.42639	0.0554008	0.0409084	0.191173	0.163285
chr16	21837054	21837151	15889966	0	-	0.639175	(0.59,1]	chr16	1271456	24	CDS	CDS:EXON_MRNA	NPIPB4	ENSG00000185864.17	ENST00000415645.6:ENST00000682606.1:ENST00000537951.1	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.88006	2.153225	2.42639	0.0554008	0.0409084	0.191173	0.163285
chr6	31630660	31630730	7115844	0	+	0.585714	(0.53,0.59]	chr6	545864	2	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8	protein_coding	protein_coding	protein_coding	protein_coding	9	47	2	1.67949	2.153085	2.62668	0.0184962	0.00157636	0.0932453	0.015761
chr7	121296447	121296547	8496834	0	+	0.26	[0,0.29]	chr7	648451	9	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	18	56	2	1.89514	2.152845	2.41055	0.0087829	1.28895e-4	0.0561975	0.00223039
chr2	222941753	222941853	2406348	0	+	0.33	(0.29,0.33]	chr2	216635	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000495541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	47	2	2.14085	2.152735	2.16462	0.0117968	6.24679e-4	0.0686664	0.00777105
chr5	146114006	146114105	6891041	0	-	0.393939	(0.39,0.42]	chr5	527438	36	UTR3	UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	35	2	1.72312	2.15271	2.5823	0.0164636	0.00246531	0.0873379	0.0230262
chr21	45474678	45474777	18145526	0	+	0.666667	(0.59,1]	chr21	1539685	3	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	10	94	2	1.92731	2.15243	2.37755	0.0110094	0.0015785	0.0652007	0.0157756
chr12	124013509	124013605	13130936	0	+	0.333333	(0.33,0.36]	chr12	1026671	7	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	11	40	2	1.93923	2.152215	2.3652	0.0142064	8.24779e-4	0.0777259	0.00968205
chr1	222733508	222733607	724617	0	+	0.30303	(0.29,0.33]	chr1	73180	9	UTR3	UTR3:EXON_MRNA	BROX	ENSG00000162819.12	ENST00000612948.4:ENST00000340934.10:ENST00000537020.5:ENST00000539697.5	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	1.66607	2.1521	2.63813	0.0424383	0.00803229	0.160073	0.0528968
chr9	131197815	131197915	10496365	0	+	0.54	(0.53,0.59]	chr9	793351	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000525384.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	43	227	2	1.96843	2.1519749999999997	2.33552	4.53825e-4	2.09466e-5	0.00643967	5.04211e-4
chr9	128180720	128180814	10863862	0	-	0.574468	(0.53,0.59]	chr9	823436	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000476239.5:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5:ENST00000324544.6:ENST00000474442.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	89	2	1.8478	2.15196	2.45612	0.0069346	1.26641e-4	0.0473133	0.00219694
chr6	26156328	26156390	7101282	0	+	0.629032	(0.59,1]	chr6	542802	1	UTR5	UTR5:EXON_MRNA	H1-4	ENSG00000168298.7	ENST00000304218.6	protein_coding	protein_coding	protein_coding	protein_coding	28	268	2	1.95768	2.151955	2.34623	0.00263509	1.29097e-4	0.0231864	0.00241859
chr5	72888152	72888227	6029170	0	+	0.573333	(0.53,0.59]	chr5	472749	2	CDS	CDS:EXON_MRNA	TNPO1	ENSG00000083312.19	ENST00000680533.1:ENST00000337273.10:ENST00000680025.1:ENST00000523768.5:ENST00000681711.1:ENST00000679378.1:ENST00000506351.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	47	2	1.88327	2.1517850000000003	2.4203	0.0298124	9.63254e-4	0.129773	0.0107809
chr1	162576776	162576844	507715	0	+	0.455882	(0.455,0.49]	chr1	54781	1	CDS	CDS:EXON_MRNA	UAP1	ENSG00000117143.13	ENST00000271469.7:ENST00000367926.8:ENST00000367925.5:ENST00000367924.1	protein_coding	protein_coding	protein_coding	protein_coding	14	58	2	1.70484	2.15176	2.59868	0.00887396	3.61596e-4	0.0567495	0.00506298
chr21	33554498	33554597	18101202	0	+	0.464646	(0.455,0.49]	chr21	1534527	39	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	32	2	1.4646	2.151595	2.83859	0.0410791	0.00215336	0.15538	0.0208395
chr1	35975494	35975593	139518	0	+	0.323232	(0.29,0.33]	chr1	17284	16	INTRON	INTRON	AGO3	ENSG00000126070.20	ENST00000324350.9:ENST00000397828.3:ENST00000634486.1:ENST00000373191.9:ENST00000246314.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	14	2	2.06067	2.151465	2.24226	0.0384863	0.0306054	0.149227	0.130226
chr12	8941360	8941451	13197228	0	-	0.296703	(0.29,0.33]	chr12	1033916	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	14	2	2.06067	2.151465	2.24226	0.0384863	0.0306054	0.149227	0.130226
chr22	29300252	29300343	18336739	0	+	0.32967	(0.29,0.33]	chr22	1558224	2	UTR3	UTR3:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3:ENST00000610553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	14	2	2.06067	2.151465	2.24226	0.0384863	0.0306054	0.149227	0.130226
chr3	37981249	37981345	3417997	0	+	0.3125	(0.29,0.33]	chr3	296820	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000447745.5:ENST00000436654.1	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.06067	2.151465	2.24226	0.0384863	0.0306054	0.149227	0.130226
chr8	81658277	81658375	9915484	0	-	0.326531	(0.29,0.33]	chr8	748877	15	UTR3	UTR3:EXON_MRNA	IMPA1	ENSG00000133731.10	ENST00000256108.10	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	2.06067	2.151465	2.24226	0.0384863	0.0306054	0.149227	0.130226
chr9	72354668	72354767	10689106	0	-	0.30303	(0.29,0.33]	chr9	808826	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFAND5	ENSG00000107372.13	ENST00000376962.10:ENST00000237937.7:ENST00000376960.8:ENST00000488164.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	14	2	2.06067	2.151465	2.24226	0.0384863	0.0306054	0.149227	0.130226
chr6	133987040	133987139	7412321	0	+	0.373737	(0.36,0.39]	chr6	568116	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000237264.9:ENST00000477527.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	1.81362	2.15142	2.48922	0.016627	0.0110399	0.0880236	0.0652374
chr19	50820767	50820849	17612018	0	-	0.548781	(0.53,0.59]	chr19	1485267	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KLK1	ENSG00000167748.11	ENST00000301420.3:ENST00000593325.5:ENST00000593859.5:ENST00000596300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	29	2	2.14205	2.15121	2.16037	0.0254312	0.0123179	0.117089	0.070688
chr20	2465763	2465819	17878975	0	-	0.535714	(0.53,0.59]	chr20	1512835	2	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	29	2	2.14205	2.15121	2.16037	0.0254312	0.0123179	0.117089	0.070688
chr6	159779626	159779708	8049061	0	-	0.390244	(0.39,0.42]	chr6	615253	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000546204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	63	2	2.01677	2.15118	2.28559	0.0235818	2.04447e-4	0.111323	0.00320892
chr5	80628691	80628790	6667374	0	-	0.363636	(0.36,0.39]	chr5	514708	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	1.97546	2.1511199999999997	2.32678	0.0239316	0.0193538	0.109927	0.0943643
chr12	56672739	56672809	13352300	0	-	0.285714	[0,0.29]	chr12	1051810	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000436399.6:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	44	2	1.97462	2.15108	2.32754	0.00334737	9.65465e-4	0.0279427	0.0115185
chr3	101593323	101593418	3638106	0	+	0.284211	[0,0.29]	chr3	311944	7	UTR3	UTR3:EXON_MRNA	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000460231.5:ENST00000469941.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	39	2	1.53782	2.150695	2.76357	0.0192097	3.52333e-4	0.0943643	0.00493767
chr15	48878458	48878549	14921708	0	+	0.571429	(0.53,0.59]	chr15	1173115	3	CDS	CDS:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3:ENST00000560490.1	protein_coding	protein_coding	protein_coding	protein_coding	6	35	2	2.0404	2.150685	2.26097	0.0362529	0.00389622	0.148525	0.0313006
chr1	633048	633145	498	0	+	0.443299	(0.42,0.455]	chr1	107	4	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	84	330	2	1.96519	2.15031	2.33543	7.26872e-5	8.73496e-6	0.00153125	0.00024628300000000003
chr11	77616202	77616301	12473504	0	-	0.383838	(0.36,0.39]	chr11	970289	18	UTR3	UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5:ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	38	2	2.00093	2.1502999999999997	2.29967	0.00996106	0.0019325	0.0621728	0.0184661
chr5	134158427	134158527	6843706	0	-	0.44	(0.42,0.455]	chr5	523625	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5:ENST00000522855.5:ENST00000328392.10:ENST00000519054.5:ENST00000519321.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	69	2	2.14843	2.150045	2.15166	0.00271028	6.21172e-4	0.0244369	0.00772798
chr10	73154351	73154448	11569446	0	-	0.536082	(0.53,0.59]	chr10	880596	2	CDS	CDS:EXON_MRNA:INTRON	ECD	ENSG00000122882.11	ENST00000372979.9:ENST00000454759.6:ENST00000484976.6:ENST00000430082.6:ENST00000453402.5:ENST00000413026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	24	2	2.0289	2.150015	2.27113	0.0373899	0.0178853	0.146698	0.0918323
chr14	23078965	23079038	14529216	0	-	0.547945	(0.53,0.59]	chr14	1138536	3	CDS	CDS:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5:ENST00000554708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	24	2	2.0289	2.150015	2.27113	0.0373899	0.0178853	0.146698	0.0918323
chr1	15933573	15933673	71872	0	+	0.56	(0.53,0.59]	chr1	8104	56	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	4	24	2	2.0404	2.15	2.2596	0.0362529	0.0185443	0.148525	0.0948733
chr1	37997683	37997776	950329	0	-	0.548387	(0.53,0.59]	chr1	100154	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	FHL3	ENSG00000183386.10	ENST00000373016.4:ENST00000485803.5:ENST00000475084.5:ENST00000477194.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	2.0404	2.15	2.2596	0.0362529	0.0185443	0.148525	0.0948733
chr12	119687591	119687684	13576778	0	-	0.548387	(0.53,0.59]	chr12	1068233	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000677438.1:ENST00000677993.1:ENST00000678087.1:ENST00000678652.1:ENST00000676849.1:ENST00000678677.1:ENST00000545913.6:ENST00000679249.1:ENST00000679120.1:ENST00000677812.1:ENST00000677849.1:ENST00000679285.1:ENST00000677738.1:ENST00000676693.1:ENST00000678236.1:ENST00000677742.1:ENST00000678708.1:ENST00000678494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	24	2	2.0404	2.15	2.2596	0.0362529	0.0185443	0.148525	0.0948733
chr1	231564712	231564805	753016	0	+	0.397849	(0.39,0.42]	chr1	76624	3	CDS	CDS:EXON_MRNA:INTRON	TSNAX-DISC1:TSNAX	ENSG00000270106.6:ENSG00000116918.15	ENST00000602634.5:ENST00000602956.5:ENST00000602962.5:ENST00000602885.5:ENST00000602567.1:ENST00000644515.1:ENST00000646525.1:ENST00000647072.1:ENST00000366639.9:ENST00000475168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	1.99911	2.1498299999999997	2.30055	0.0477207	0.0070645	0.17993	0.0477419
chr19	4361409	4361504	17431403	0	-	0.705263	(0.59,1]	chr19	1454998	12	UTR3	UTR3:EXON_MRNA	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.87297	2.14968	2.42639	0.0409084	0.0308113	0.163285	0.130016
chr1	75790001	75790101	299131	0	+	0.34	(0.33,0.36]	chr1	31264	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RABGGTB	ENSG00000137955.16	ENST00000496055.5:ENST00000485459.5:ENST00000473406.5:ENST00000370826.3:ENST00000319942.8:ENST00000470201.5:ENST00000471759.5:ENST00000491266.5:ENST00000461653.5:ENST00000489450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	2.0111	2.1495100000000003	2.28792	0.0239159	0.0124964	0.112531	0.071421
chr11	57817779	57817877	11953254	0	+	0.336735	(0.33,0.36]	chr11	914890	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	22	2	2.0111	2.1495100000000003	2.28792	0.0239159	0.0124964	0.112531	0.071421
chr2	54972670	54972767	2666100	0	-	0.381443	(0.36,0.39]	chr2	238467	6	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000486085.5	protein_coding	protein_coding	protein_coding	protein_coding	44	195	2	1.49355	2.14935	2.80515	0.00814799	2.27732e-7	0.0535861	1.13061e-5
chr7	152181899	152181999	9135380	0	-	0.49	(0.455,0.49]	chr7	698409	13	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	37	2	2.12994	2.149175	2.16841	0.0304832	0.00221684	0.130204	0.0205155
chr17	40391572	40391640	16538761	0	-	0.485294	(0.455,0.49]	chr17	1354561	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000578412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	45	2	1.88914	2.14915	2.40916	0.0127583	0.00105201	0.0719798	0.0116806
chr16	31191438	31191521	15633487	0	+	0.46988	(0.455,0.49]	chr16	1241226	1	UTR3	UTR3:EXON_MRNA	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000569760.5:ENST00000483853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	68	2	2.13874	2.14909	2.15944	0.00121538	0.00114312	0.0130338	0.0130089
chr6	43558500	43558591	7708452	0	-	0.406593	(0.39,0.42]	chr6	591563	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	24	2	1.40975	2.149055	2.88836	0.0492699	0.0102432	0.177329	0.062872
chr1	76699881	76699975	307197	0	+	0.595745	(0.59,1]	chr1	31551	2	EXON_PSEUDO	EXON_PSEUDO	TPI1P1	ENSG00000226415.1	ENST00000420977.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	40	2	2.03921	2.148965	2.25872	0.0371471	0.0193473	0.151849	0.0969537
chr3	13352079	13352131	4046570	0	-	0.596154	(0.59,1]	chr3	339627	1	CDS	CDS:EXON_MRNA	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000479519.5:ENST00000420141.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	2.03921	2.148965	2.25872	0.0371471	0.0193473	0.151849	0.0969537
chr17	7311821	7311912	16103938	0	+	0.692308	(0.59,1]	chr17	1296310	1	UTR3	UTR3:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	11	99	2	1.88528	2.1485250000000002	2.41177	0.00718989	0.00235332	0.0485995	0.0215127
chr20	47209886	47209983	17993106	0	-	0.391753	(0.39,0.42]	chr20	1524924	8	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11	protein_coding	protein_coding	protein_coding	protein_coding	10	40	2	2.09802	2.14839	2.19876	0.00495705	0.00372927	0.0368301	0.031224
chr5	146484029	146484129	6281315	0	+	0.36	(0.33,0.36]	chr5	489601	4	SS5_PROX	SS5_PROX:INTRON	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000394421.7:ENST00000549332.1:ENST00000515203.5:ENST00000506524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	32	2	2.09934	2.14827	2.1972	0.0120497	0.00332656	0.0694419	0.0277823
chr1	44767096	44767179	174072	0	+	0.554217	(0.53,0.59]	chr1	22406	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5	protein_coding	protein_coding	protein_coding	protein_coding	6	34	2	2.14205	2.14804	2.15403	0.0123179	0.0118065	0.070688	0.0686664
chr17	32369659	32369759	16200647	0	+	0.62	(0.59,1]	chr17	1308198	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	55	2	1.73729	2.14783	2.55837	0.0303312	0.00709491	0.129874	0.0479177
chrX	24067963	24068035	18616588	0	+	0.416667	(0.39,0.42]	chrX	1589824	1	CDS	CDS:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	2.01677	2.1477250000000003	2.27868	0.0235818	0.00209079	0.111323	0.0196408
chr5	72220437	72220531	6631316	0	-	0.521277	(0.49,0.53]	chr5	512531	12	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MRPS27	ENSG00000113048.17	ENST00000261413.10:ENST00000457646.8:ENST00000515226.5:ENST00000519874.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	16	2	1.99044	2.14742	2.3044	0.0509448	0.0435903	0.181793	0.170594
chr6	70395226	70395266	7220347	0	+	0.425	(0.42,0.455]	chr6	557275	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-462G2.1	ENSG00000237643.2	ENST00000671572.1:ENST00000418403.2:ENST00000667898.1	lncRNA	lncRNA	lncRNA	lncRNA	13	57	2	2.13191	2.147025	2.16214	0.00696724	9.2184e-4	0.0474632	0.0104432
chr5	151804922	151805017	6299774	0	+	0.284211	[0,0.29]	chr5	491958	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	37	2	1.61412	2.14701	2.6799	0.0117746	0.00121378	0.0689771	0.0135383
chr8	11843992	11844090	9699195	0	-	0.44898	(0.42,0.455]	chr8	734802	16	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	1.95205	2.14698	2.34191	0.0248244	0.0159091	0.113644	0.0854674
chr19	10294400	10294480	17224735	0	+	0.65	(0.59,1]	chr19	1418556	1	CDS	CDS:EXON_MRNA	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	48	2	1.79051	2.146865	2.50322	0.0396851	0.00863444	0.161349	0.0556009
chrX	154786203	154786301	19279885	0	-	0.540816	(0.53,0.59]	chrX	1638753	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000493871.1:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	33	166	2	2.00751	2.1468350000000003	2.28616	2.66428e-4	2.1163e-4	0.00397689	0.00357806
chr1	206648470	206648569	682552	0	+	0.494949	(0.49,0.53]	chr1	68978	12	CDS	CDS:UTR3:EXON_MRNA:INTRON	DYRK3	ENSG00000143479.18	ENST00000367109.8:ENST00000367108.7:ENST00000489878.1:ENST00000649163.1:ENST00000367106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	21	2	1.99044	2.14654	2.30264	0.0435903	0.0165402	0.170594	0.087611
chr12	124324611	124324710	13597612	0	-	0.424242	(0.42,0.455]	chr12	1071370	3	UTR3	UTR3:EXON_MRNA	NCOR2	ENSG00000196498.13	ENST00000404621.5:ENST00000405201.5:ENST00000404121.6:ENST00000356219.7:ENST00000429285.6	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.93033	2.1464	2.36247	0.0505055	0.0462889	0.181202	0.176878
chr15	68290955	68291048	14995249	0	+	0.451613	(0.42,0.455]	chr15	1178761	12	CDS	CDS:EXON_MRNA	FEM1B	ENSG00000169018.6	ENST00000306917.5:ENST00000566008.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.93033	2.1464	2.36247	0.0505055	0.0462889	0.181202	0.176878
chr2	202880859	202880937	3128678	0	-	0.435897	(0.42,0.455]	chr2	276614	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	WDR12	ENSG00000138442.10	ENST00000261015.5:ENST00000467777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	1.93033	2.1464	2.36247	0.0505055	0.0462889	0.181202	0.176878
chr2	233841705	233841805	3231782	0	-	0.43	(0.42,0.455]	chr2	284588	12	CDS	CDS:EXON_MRNA	HJURP	ENSG00000123485.12	ENST00000432087.5:ENST00000441687.5:ENST00000411486.7:ENST00000414924.5	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.93033	2.1464	2.36247	0.0505055	0.0462889	0.181202	0.176878
chr6	15312720	15312820	7064836	0	+	0.44	(0.42,0.455]	chr6	540710	634	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.93033	2.1464	2.36247	0.0505055	0.0462889	0.181202	0.176878
chr6	41905639	41905734	7701692	0	-	0.431579	(0.42,0.455]	chr6	590630	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-973N23.5:MED20	ENSG00000288721.1:ENSG00000124641.16	ENST00000684631.1:ENST00000682596.1:ENST00000683313.1:ENST00000265350.9:ENST00000467535.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	15	2	1.93033	2.1464	2.36247	0.0505055	0.0462889	0.181202	0.176878
chr2	97646086	97646186	1946457	0	+	0.7	(0.59,1]	chr2	184708	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	COX5B	ENSG00000135940.7	ENST00000258424.3:ENST00000464949.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	102	2	2.14463	2.1462649999999996	2.1479	0.00445434	0.00315034	0.0340903	0.0277658
chr4	24540839	24540893	5358835	0	-	0.351852	(0.33,0.36]	chr4	429840	1	CDS	CDS:EXON_MRNA	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000503562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	18	2	2.00765	2.14615	2.28465	0.0287001	0.0188404	0.128757	0.0958835
chrX	151973599	151973693	19267771	0	-	0.43617	(0.42,0.455]	chrX	1636824	11	INTRON	INTRON	GABRE	ENSG00000102287.19	ENST00000370328.4:ENST00000441219.5:ENST00000417300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	23	2	1.78521	2.14585	2.50649	0.0302857	0.0195653	0.130016	0.0951892
chr19	10391382	10391466	17459888	0	-	0.690476	(0.59,1]	chr19	1460930	4	UTR3	UTR3:EXON_MRNA	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	111	2	1.96122	2.14583	2.33044	0.00693749	0.00126677	0.04733	0.0134549
chr20	43716087	43716168	17794527	0	+	0.54321	(0.53,0.59]	chr20	1504265	1	UTR3	UTR3:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	1.63267	2.145805	2.65894	0.0193255	0.0170789	0.0943643	0.0902695
chr14	74902895	74902989	14402439	0	+	0.56383	(0.53,0.59]	chr14	1125613	7	UTR3	UTR3:EXON_MRNA	DLST	ENSG00000119689.15	ENST00000334220.9	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.77634	2.14567	2.515	0.0292633	0.025972	0.129773	0.117079
chr7	103298637	103298708	8440981	0	+	0.43662	(0.42,0.455]	chr7	644992	2	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	18	2	1.72071	2.14561	2.57051	0.0499984	0.0265466	0.179758	0.120071
chr16	2768063	2768162	15494956	0	+	0.636364	(0.59,1]	chr16	1227802	67	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000572883.1:ENST00000572721.1:ENST00000573311.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	141	2	1.91868	2.145455	2.37223	0.00596765	5.69872e-4	0.0428562	0.00779355
chr19	15422975	15423075	17486659	0	-	0.51	(0.49,0.53]	chr19	1465585	31	UTR3	UTR3:EXON_MRNA	WIZ	ENSG00000011451.21	ENST00000673675.1:ENST00000263381.12:ENST00000674001.1:ENST00000674089.4:ENST00000389282.8:ENST00000545156.5:ENST00000599910.6:ENST00000643092.1:ENST00000648664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	29	2	2.10817	2.1452799999999996	2.18239	0.024394	0.00798134	0.111797	0.0527008
chr19	45129129	45129229	17351591	0	+	0.51	(0.49,0.53]	chr19	1439621	2	INTRON	INTRON	MARK4:PPP1R37	ENSG00000007047.15:ENSG00000104866.11	ENST00000587566.5:ENST00000544069.2:ENST00000221462.9:ENST00000544897.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	2.10817	2.1452799999999996	2.18239	0.024394	0.00798134	0.111797	0.0527008
chr5	55366799	55366875	5973584	0	+	0.368421	(0.36,0.39]	chr5	468343	2	CDS	CDS:UTR3:EXON_MRNA	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	31	2	1.53109	2.145115	2.75914	0.0522406	8.69953e-4	0.19442	0.0101157
chr12	8081271	8081370	13193507	0	-	0.434343	(0.42,0.455]	chr12	1033556	10	EXON_MRNA	EXON_MRNA	RP11-69M1.6	ENSG00000279865.1	ENST00000624929.1	TEC	TEC	TEC	TEC	88	385	2	1.8657	2.1450199999999997	2.42434	2.5093e-4	1.83129e-6	0.00411337	6.65941e-5
chr7	128997461	128997535	9060606	0	-	0.337838	(0.33,0.36]	chr7	691839	2	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	9	30	2	1.81839	2.14501	2.47163	0.0129725	0.0087551	0.0724783	0.0562439
chr2	200830008	200830062	2309441	0	+	0.388889	(0.36,0.39]	chr2	208971	1	EXON_SMALL	EXON_SMALL	RNU6-31P	ENSG00000207116.1	ENST00000384388.1	snRNA	snRNA	snRNA	snRNA	15	55	2	1.65457	2.144965	2.63536	0.0133727	1.55248e-4	0.0745745	0.00258523
chr16	21403573	21403666	15888066	0	-	0.612903	(0.59,1]	chr16	1271076	2	INTRON	INTRON	NPIPB3	ENSG00000169246.16	ENST00000542817.1	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.79051	2.144955	2.4994	0.0396851	0.0333573	0.161349	0.137922
chr22	21622654	21622752	18303188	0	+	0.571429	(0.53,0.59]	chr22	1554195	11	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	79	2	1.69448	2.144885	2.59529	0.00597529	3.63905e-4	0.0428562	0.00547347
chr9	113407825	113407923	10807725	0	-	0.530612	(0.53,0.59]	chr9	819089	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POLE3	ENSG00000148229.13	ENST00000374171.5:ENST00000374169.7:ENST00000479871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	78	2	1.93669	2.1448400000000003	2.35299	0.00265816	8.09771e-4	0.0232789	0.0100672
chr18	2656075	2656175	16726473	0	+	0.7	(0.59,1]	chr18	1379671	1	CDS_START	CDS_START:CDS:EXON_MRNA	SMCHD1	ENSG00000101596.16	ENST00000320876.11	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.96416	2.144355	2.32455	0.0520547	0.044741	0.193787	0.166115
chr4	153344648	153344737	5175077	0	+	0.752809	(0.59,1]	chr4	417941	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RP11-559F19.4:MND1	ENSG00000288637.1:ENSG00000121211.8	ENST00000675518.1:ENST00000675838.1:ENST00000674680.1:ENST00000674967.1:ENST00000675079.1:ENST00000622785.4:ENST00000503967.1:ENST00000509752.5:ENST00000240488.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	30	2	1.96416	2.144355	2.32455	0.0520547	0.044741	0.193787	0.166115
chr5	137753248	137753337	6858092	0	-	0.662921	(0.59,1]	chr5	524501	1	CDS	CDS:EXON_MRNA	HNRNPA0	ENSG00000177733.7	ENST00000314940.7	protein_coding	protein_coding	protein_coding	protein_coding	3	30	2	1.96416	2.144355	2.32455	0.0520547	0.044741	0.193787	0.166115
chr8	56073706	56073768	9834815	0	-	0.419355	(0.39,0.42]	chr8	744200	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000523936.5:ENST00000519606.5:ENST00000521289.5:ENST00000518875.5:ENST00000519369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	60	2	1.86175	2.1442	2.42665	0.00605112	3.33956e-4	0.0437023	0.00472923
chr1	26269536	26269614	108807	0	+	0.512821	(0.49,0.53]	chr1	12938	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	16	2	1.90685	2.14391	2.38097	0.0534351	0.0425419	0.184995	0.167547
chr11	63996529	63996588	11978201	0	+	0.508475	(0.49,0.53]	chr11	918608	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	OTUB1	ENSG00000167770.12	ENST00000422031.6:ENST00000301453.7:ENST00000541478.5:ENST00000535715.5:ENST00000428192.6:ENST00000538426.6:ENST00000543004.5:ENST00000543988.1:ENST00000535140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	16	2	1.90685	2.14391	2.38097	0.0534351	0.0425419	0.184995	0.167547
chr12	6587756	6587852	13187262	0	-	0.5	(0.49,0.53]	chr12	1032318	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000647483.1:ENST00000646608.1:ENST00000643538.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1:ENST00000644356.1:ENST00000540960.2:ENST00000646070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	16	2	1.90685	2.14391	2.38097	0.0534351	0.0425419	0.184995	0.167547
chr5	230875	230937	5847979	0	+	0.677419	(0.59,1]	chr5	459556	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SDHA:CTD-2546F11.1	ENSG00000073578.17:ENSG00000286001.1	ENST00000617470.4:ENST00000651543.1:ENST00000504309.5:ENST00000505555.5:ENST00000510361.5:ENST00000264932.11:ENST00000504824.5:ENST00000509420.5:ENST00000514027.5:ENST00000514233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	40	2	2.04362	2.143795	2.24397	0.036186	0.0206682	0.145024	0.0997234
chr1	61404084	61404184	231251	0	+	0.5	(0.49,0.53]	chr1	27285	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000482020.1:ENST00000357977.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	22	2	1.56467	2.143595	2.72252	0.051923	0.0161474	0.18423900000000001	0.0860154
chr16	74305366	74305445	15739425	0	+	0.518987	(0.49,0.53]	chr16	1254004	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000563150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.56467	2.143595	2.72252	0.051923	0.0161474	0.18423900000000001	0.0860154
chr1	26277766	26277861	108895	0	+	0.505263	(0.49,0.53]	chr1	12966	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	25	2	1.56437	2.143445	2.72252	0.0379797	0.0161474	0.14882600000000001	0.0860154
chr17	49050232	49050330	16256648	0	+	0.520408	(0.49,0.53]	chr17	1317683	9	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.56437	2.143445	2.72252	0.0379797	0.0161474	0.14882600000000001	0.0860154
chr9	121190553	121190642	10835984	0	-	0.516854	(0.49,0.53]	chr9	820943	1	CDS	CDS:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.56417	2.143345	2.72252	0.0289719	0.0161474	0.127437	0.0860154
chr3	160428847	160428942	3853066	0	+	0.368421	(0.36,0.39]	chr3	327472	2	CDS	CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000488017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	1.66836	2.14323	2.6181	0.0474647	0.00176908	0.17993	0.0172426
chr7	23311969	23312067	8724206	0	-	0.295918	(0.29,0.33]	chr7	666009	19	UTR3	UTR3:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000619562.4:ENST00000421467.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	23	2	1.83055	2.14323	2.45591	0.0348758	0.00406506	0.144642	0.032143
chr1	47376745	47376844	182632	0	+	0.353535	(0.33,0.36]	chr1	23843	1	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	37	2	1.60213	2.142935	2.68374	0.0139784	0.00194492	0.0766916	0.0193053
chr4	169697370	169697461	5217960	0	+	0.483516	(0.455,0.49]	chr4	420911	3	CDS	CDS:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000347613.8:ENST00000360642.7:ENST00000513761.6:ENST00000613795.4:ENST00000507875.5:ENST00000504131.6:ENST00000515420.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.43393	2.1428249999999998	2.85172	0.0573788	0.010864	0.196772	0.0643837
chr21	43053288	43053386	18271276	0	-	0.5	(0.49,0.53]	chr21	1549422	2	UTR3	UTR3:EXON_MRNA	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000461686.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	34	2	1.66773	2.14275	2.61777	0.0381288	0.00172617	0.149227	0.0178146
chr4	7754076	7754159	4712497	0	+	0.542169	(0.53,0.59]	chr4	390946	1	EXON_LNCRNA	EXON_LNCRNA	AFAP1-AS1	ENSG00000272620.2	ENST00000608442.2:ENST00000674004.1	lncRNA	lncRNA	lncRNA	lncRNA	4	22	2	1.78041	2.14244	2.50447	0.0407112	0.0301162	0.163285	0.130016
chr10	56357523	56357623	11514047	0	-	0.35	(0.33,0.36]	chr10	877457	4	UTR3	UTR3:EXON_MRNA	ZWINT	ENSG00000122952.17	ENST00000373944.8:ENST00000395405.5:ENST00000494312.5:ENST00000318387.6:ENST00000489649.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	41	2	1.58192	2.142215	2.70251	0.0372891	2.0519e-4	0.152293	0.00321957
chr1	55067750	55067850	1031132	0	-	0.38	(0.36,0.39]	chr1	107103	15	UTR3	UTR3:EXON_MRNA	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	3	13	2	1.89872	2.1421799999999998	2.38564	0.056542	0.0476159	0.19417	0.17993
chr13	50012877	50012970	13732644	0	+	0.376344	(0.36,0.39]	chr13	1082012	10	CDS	CDS:EXON_MRNA:INTRON	TRIM13	ENSG00000204977.10	ENST00000474805.5:ENST00000478111.5:ENST00000420995.6:ENST00000356017.8:ENST00000378182.4:ENST00000457662.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	13	2	1.89872	2.1421799999999998	2.38564	0.056542	0.0476159	0.19417	0.17993
chr7	152162686	152162781	9135179	0	-	0.378947	(0.36,0.39]	chr7	698363	7	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	13	2	1.89872	2.1421799999999998	2.38564	0.056542	0.0476159	0.19417	0.17993
chr17	31940421	31940486	16197150	0	+	0.353846	(0.33,0.36]	chr17	1307704	1	CDS	CDS:EXON_MRNA	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.82394	2.1421099999999997	2.46028	0.0494504	0.00381804	0.18557	0.0309081
chr7	74196262	74196358	8334073	0	+	0.458333	(0.455,0.49]	chr7	634971	11	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	28	2	1.92777	2.142105	2.35644	0.0286531	0.00555877	0.128685	0.0405952
chr17	19061911	19062005	16154451	0	+	0.425532	(0.42,0.455]	chr17	1302760	1	EXON_SMALL	EXON_SMALL	SNORD3B-1	ENSG00000265185.6	ENST00000577988.2	snoRNA	snoRNA	snoRNA	snoRNA	491	2057	2	1.74153	2.1419550000000003	2.54238	1.72753e-4	6.63997e-8	0.00280667	4.34223e-6
chrX	11178173	11178248	18956494	0	-	0.586667	(0.53,0.59]	chrX	1614341	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ARHGAP6	ENSG00000047648.23	ENST00000657361.1:ENST00000380736.5:ENST00000337414.9:ENST00000495242.5:ENST00000303025.10:ENST00000489330.6:ENST00000380718.1:ENST00000380717.7:ENST00000491514.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.76849	2.1417450000000002	2.515	0.0420665	0.0292633	0.158792	0.129773
chr3	196356287	196356386	4665028	0	-	0.464646	(0.455,0.49]	chr3	385869	88	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.98188	2.141635	2.30139	0.0530131	0.0226804	0.195536	0.105116
chr5	138391012	138391108	6244187	0	+	0.458333	(0.455,0.49]	chr5	486509	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	19	2	1.98188	2.141635	2.30139	0.0530131	0.0226804	0.195536	0.105116
chr2	55032518	55032618	2666713	0	-	0.24	[0,0.29]	chr2	238517	39	INTRON	INTRON	RTN4	ENSG00000115310.18	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000402434.6:ENST00000438462.1:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	5	15	2	1.93716	2.14148	2.3458	0.0548436	0.0116272	0.189511	0.0685835
chr19	34469317	34469414	17301280	0	+	0.360825	(0.36,0.39]	chr19	1430051	2	UTR3	UTR3:EXON_MRNA	UBA2	ENSG00000126261.13	ENST00000246548.9:ENST00000439527.6:ENST00000592791.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.94692	2.14146	2.336	0.0192083	0.0154226	0.0943643	0.0834369
chr1	35601795	35601893	938321	0	-	0.357143	(0.33,0.36]	chr1	98692	24	UTR3	UTR3:EXON_MRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.65713	2.141435	2.62574	0.0528205	0.00176861	0.195536	0.0172426
chr1	167788820	167788920	524591	0	+	0.43	(0.42,0.455]	chr1	56285	10	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding	9	43	2	1.7601	2.14132	2.52254	0.0312663	5.58298e-4	0.132093	0.00709272
chr1	161518741	161518840	500537	0	+	0.393939	(0.39,0.42]	chr1	54251	7	UTR3	UTR3:EXON_MRNA:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000271450.12:ENST00000467525.5:ENST00000537821.2:ENST00000459885.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	6	25	2	1.93908	2.141285	2.34349	0.0169272	0.0154765	0.0890655	0.0836906
chr5	150445685	150445785	6914281	0	-	0.43	(0.42,0.455]	chr5	529160	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1:ENST00000519855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	1.87571	2.141175	2.40664	0.0138685	0.00445101	0.0760883	0.0340751
chr3	185417987	185418086	4625649	0	-	0.444444	(0.42,0.455]	chr3	382004	6	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	42	168	2	1.94464	2.14116	2.33768	2.56098e-4	5.7969e-5	0.00384872	0.001284
chr6	28863677	28863747	7652659	0	-	0.628571	(0.59,1]	chr6	583176	1	SS3_PROX	SS3_PROX:INTRON	LINC01623	ENSG00000225595.2	ENST00000606624.1	lncRNA	lncRNA	lncRNA	lncRNA	386	3332	2	1.91137	2.140735	2.3701	2.80065e-4	1.22071e-5	0.00448836	3.24581e-4
chr15	28315650	28315731	14838071	0	+	0.580247	(0.53,0.59]	chr15	1164300	1	EXON_PSEUDO	EXON_PSEUDO	RPL41P2	ENSG00000256338.2	ENST00000544920.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	81	2	1.53214	2.14069	2.74924	0.0250428	4.1783e-5	0.116782	8.88213e-4
chr15	65889025	65889124	14982339	0	+	0.343434	(0.33,0.36]	chr15	1177744	13	UTR3	UTR3:EXON_MRNA	RAB11A	ENSG00000103769.10	ENST00000261890.7	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	2.00765	2.1405000000000003	2.27335	0.0287001	0.00837768	0.128757	0.0541213
chr12	46187787	46187886	13313426	0	-	0.252525	[0,0.29]	chr12	1043464	49	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5	protein_coding	protein_coding	protein_coding	protein_coding	9	22	2	1.85419	2.14032	2.42645	0.0136504	0.0123114	0.0760525	0.070688
chr9	69718043	69718142	10674883	0	-	0.393939	(0.39,0.42]	chr9	808211	87	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5:ENST00000415701.6	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	2.13132	2.14016	2.149	0.02908	0.0149155	0.127648	0.0812412
chr7	155309642	155309741	8632670	0	+	0.434343	(0.42,0.455]	chr7	659289	14	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	32	131	2	1.15204	2.1401250000000003	3.12821	0.0292462	4.41606e-7	0.129773	1.99209e-5
chr1	23310809	23310895	894711	0	-	0.55814	(0.53,0.59]	chr1	92820	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	53	2	1.90598	2.1399999999999997	2.37402	0.00735883	0.00230837	0.0490627	0.0211205
chr9	107434777	107434877	10785767	0	-	0.27	[0,0.29]	chr9	816403	15	INTRON	INTRON	LINC01509	ENSG00000226825.2	ENST00000659615.1:ENST00000654319.1:ENST00000655513.1	lncRNA	lncRNA	lncRNA	lncRNA	7	19	2	1.72144	2.1399850000000002	2.55853	0.0389538	0.007538	0.158558	0.0497903
chr15	90448572	90448654	15100233	0	+	0.487805	(0.455,0.49]	chr15	1188071	1	CDS	CDS:EXON_MRNA:INTRON	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000633485.1:ENST00000560738.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	1.92777	2.139955	2.35214	0.0455621	0.0286531	0.168044	0.128685
chr4	39825192	39825289	5384651	0	-	0.381443	(0.36,0.39]	chr4	431623	25	UTR3	UTR3:EXON_MRNA	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.89872	2.13992	2.38112	0.056542	0.0031815	0.19417	0.0279343
chr12	110429658	110429758	13537380	0	-	0.63	(0.59,1]	chr12	1064862	261	INTRON	INTRON	RP11-478C19.2	ENSG00000258210.1	ENST00000550231.1	lncRNA	retained_intron	lncRNA	retained_intron	28	250	2	1.28215	2.139795	2.99744	0.0246508	6.58079e-6	0.115033	1.94999e-4
chr2	87521440	87521518	1932090	0	+	0.371795	(0.36,0.39]	chr2	182285	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	CYTOR:RP13-511M20.1	ENSG00000222041.11:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000646636.1:ENST00000642293.1:ENST00000644040.1:ENST00000645138.1:ENST00000629257.1:ENST00000645729.1:ENST00000413202.1:ENST00000643509.1:ENST00000409054.2:ENST00000643321.1	lncRNA	lncRNA	lncRNA	lncRNA	6	20	2	1.43858	2.139735	2.84089	0.0581529	0.0128123	0.199345	0.0719798
chrX	3931686	3931782	18933110	0	-	0.53125	(0.53,0.59]	chrX	1613537	20	EXON_LNCRNA	EXON_LNCRNA	RP11-706O15.1	ENSG00000285756.2	ENST00000381105.2	lncRNA	lncRNA	lncRNA	lncRNA	5	30	2	1.90953	2.13972	2.36991	0.0517711	0.00501452	0.193577	0.0370872
chrX	154443168	154443268	18918006	0	+	0.58	(0.53,0.59]	chrX	1611973	6	UTR3	UTR3:EXON_MRNA	GDI1	ENSG00000203879.12	ENST00000447750.7:ENST00000491154.1:ENST00000468483.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	30	2	1.90953	2.13972	2.36991	0.0517711	0.00501452	0.193577	0.0370872
chr12	54350806	54350901	12892162	0	+	0.4	(0.39,0.42]	chr12	1003028	4	UTR3	UTR3:EXON_MRNA	COPZ1	ENSG00000111481.10	ENST00000549043.5:ENST00000262061.7:ENST00000550171.5:ENST00000455864.6:ENST00000549116.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	64	2	1.92471	2.139675	2.35464	0.00446637	3.42068e-4	0.0347231	0.00482266
chr16	88809697	88809797	16075165	0	-	0.58	(0.53,0.59]	chr16	1291795	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APRT	ENSG00000198931.11	ENST00000378364.8:ENST00000567713.5:ENST00000568319.5:ENST00000567391.5:ENST00000426324.6:ENST00000567057.5:ENST00000563655.5:ENST00000569616.1:ENST00000568575.1:ENST00000562464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	43	2	1.96946	2.13967	2.30988	0.0082201	0.00643853	0.0534646	0.0452349
chr6	7288601	7288698	7586879	0	-	0.381443	(0.36,0.39]	chr6	578694	8	UTR3	UTR3:EXON_MRNA:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	32	2	1.81435	2.1395	2.46465	0.0302191	0.00159698	0.129773	0.015942
chr12	54238461	54238560	13342911	0	-	0.313131	(0.29,0.33]	chr12	1049602	71	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	22	66	2	2.0952	2.13939	2.18358	9.39734e-4	5.8661e-4	0.0112976	0.00742347
chr4	121818799	121818856	5626286	0	-	0.491228	(0.49,0.53]	chr4	448541	1	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	21	103	2	1.81634	2.13921	2.46208	0.00637766	3.62748e-5	0.0448616	7.9276e-4
chr2	27622534	27622631	1693844	0	+	0.350515	(0.33,0.36]	chr2	166310	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF512:RP11-158I13.2	ENSG00000243943.10:ENSG00000259080.1	ENST00000556601.5:ENST00000413371.6:ENST00000416005.6:ENST00000379717.5:ENST00000355467.6:ENST00000505973.1:ENST00000488055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	5	18	2	1.80608	2.138855	2.47163	0.0416784	0.0129725	0.157445	0.0724783
chr7	127374224	127374322	9057524	0	-	0.336735	(0.33,0.36]	chr7	691099	9	CDS	CDS:UTR3:EXON_MRNA	ZNF800	ENSG00000048405.10	ENST00000265827.8:ENST00000393313.5:ENST00000393312.5:ENST00000619291.4	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.80608	2.138855	2.47163	0.0416784	0.0129725	0.157445	0.0724783
chr15	48336045	48336090	14921513	0	+	0.488889	(0.455,0.49]	chr15	1173072	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DUT	ENSG00000128951.14	ENST00000559935.5:ENST00000559416.5:ENST00000558813.5:ENST00000331200.8:ENST00000558472.5:ENST00000558978.5:ENST00000455976.6:ENST00000559540.5:ENST00000558367.1:ENST00000561350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	23	2	1.8708	2.13872	2.40664	0.0324007	0.0123662	0.134751	0.0705839
chr5	118974399	118974492	6174264	0	+	0.376344	(0.36,0.39]	chr5	481546	4	PRIMIRNA	PRIMIRNA	MIR1244-2	ENSG00000283498.1	ENST00000636449.1	miRNA	primary_miRNA	miRNA	primary_miRNA	11	41	2	1.63825	2.138705	2.63916	0.0311278	2.03183e-4	0.130473	0.00344785
chr9	83968276	83968374	10712857	0	-	0.265306	[0,0.29]	chr9	810477	3	UTR3	UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7	protein_coding	protein_coding	protein_coding	protein_coding	11	33	2	1.79922	2.13865	2.47808	0.0223458	8.43399e-4	0.106042	0.00984729
chr1	52020486	52020575	1018056	0	-	0.325843	(0.29,0.33]	chr1	105390	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TXNDC12:RP11-91A18.6	ENSG00000117862.13:ENSG00000285839.1	ENST00000371626.9:ENST00000469458.5:ENST00000648686.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	23	2	2.0986	2.138575	2.17855	0.0183673	0.00919301	0.0928041	0.0581197
chr5	66078921	66079019	6006105	0	+	0.346939	(0.33,0.36]	chr5	470535	5	UTR3	UTR3:EXON_MRNA	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000508515.1	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.96645	2.138355	2.31026	0.0519897	0.0197415	0.18423900000000001	0.095966
chr1	155293259	155293343	1307565	0	-	0.654762	(0.59,1]	chr1	132203	2	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	6	57	2	2.11074	2.138275	2.16581	0.0305	0.00657102	0.130204	0.0458787
chr16	84124429	84124529	16060671	0	-	0.4	(0.39,0.42]	chr16	1290000	24	UTR3	UTR3:EXON_MRNA	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000619773.1:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	17	2	1.77926	2.138135	2.49701	0.0429531	0.0339607	0.161091	0.141431
chr2	152673597	152673651	2944234	0	-	0.314815	(0.29,0.33]	chr2	261608	1	CDS	CDS:UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000354363.11:ENST00000545856.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	25	2	2.00201	2.13806	2.27411	0.0134564	0.00686811	0.0744942	0.0468903
chr2	47805617	47805707	1788262	0	+	0.388889	(0.36,0.39]	chr2	172684	1	CDS	CDS:UTR3:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.81435	2.138055	2.46176	0.0302191	0.00365867	0.129773	0.0299719
chr12	48690744	48690843	13321354	0	-	0.373737	(0.36,0.39]	chr12	1044934	24	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.85489	2.1380149999999998	2.42114	0.0350721	0.00564641	0.141601	0.0422191
chr2	216113033	216113129	2379772	0	+	0.4375	(0.42,0.455]	chr2	213759	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000429133.5:ENST00000476360.1:ENST00000392132.7:ENST00000417391.1:ENST00000451695.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	26	2	1.63927	2.13796	2.63665	0.0455517	0.0048172	0.175554	0.0365653
chr7	5528448	5528532	8659484	0	-	0.595238	(0.59,1]	chr7	662116	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	467	2	2.0125	2.1379400000000004	2.26338	4.51887e-4	1.21198e-4	0.00642319	0.00210755
chr1	29065079	29065179	121082	0	+	0.46	(0.455,0.49]	chr1	14690	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1:ENST00000644470.1:ENST00000646871.1:ENST00000488277.1:ENST00000490308.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	59	2	1.80621	2.1377100000000002	2.46921	0.012455	2.55246e-4	0.0710484	0.00383691
chr6	30724872	30724967	7112227	0	+	0.4	(0.39,0.42]	chr6	545067	6	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	111	403	2	1.81383	2.1377	2.46157	1.91337e-4	1.06132e-6	0.00304757	4.64351e-5
chr11	12989455	12989526	12278113	0	-	0.56338	(0.53,0.59]	chr11	949328	1	EXON_LNCRNA	EXON_LNCRNA	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2:ENST00000671253.1:ENST00000653758.1:ENST00000662291.1:ENST00000671577.1:ENST00000663902.1:ENST00000653958.1:ENST00000526388.2:ENST00000504230.2:ENST00000531402.6:ENST00000534477.6:ENST00000653981.1:ENST00000667588.1	lncRNA	lncRNA	lncRNA	lncRNA	6	33	2	2.0042	2.137665	2.27113	0.0178853	0.0113999	0.0918323	0.0668496
chr12	53475034	53475117	12886693	0	+	0.566265	(0.53,0.59]	chr12	1002475	3	CDS	CDS:EXON_MRNA:INTRON	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	2.0042	2.137665	2.27113	0.0178853	0.0113999	0.0918323	0.0668496
chr8	38139071	38139162	9291782	0	+	0.406593	(0.39,0.42]	chr8	710654	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	2.09368	2.1376150000000003	2.18155	0.0283931	0.00324532	0.127654	0.0271838
chr18	35333599	35333698	17076652	0	-	0.373737	(0.36,0.39]	chr18	1402842	15	UTR3	UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.97546	2.1376	2.29974	0.0239316	0.00926291	0.109927	0.0586162
chr2	99196199	99196298	1952302	0	+	0.383838	(0.36,0.39]	chr2	185459	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-111H13.1:MRPL30	ENSG00000241962.9:ENSG00000185414.20	ENST00000424491.5:ENST00000338148.8:ENST00000465432.1:ENST00000409841.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	23	2	1.97546	2.1376	2.29974	0.0239316	0.00926291	0.109927	0.0586162
chr22	23767874	23767972	18448293	0	-	0.693878	(0.59,1]	chr22	1573354	1	UTR5	UTR5:EXON_MRNA	CHCHD10	ENSG00000250479.9	ENST00000484558.3:ENST00000401675.7:ENST00000520222.1:ENST00000517886.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	147	2	1.34586	2.1376	2.92934	0.0259403	8.94753e-5	0.118873	0.00165983
chr2	152659092	152659189	2944074	0	-	0.42268	(0.42,0.455]	chr2	261551	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000471701.1:ENST00000471167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	37	2	1.58967	2.1375599999999997	2.68545	0.026634	0.00135767	0.118265	0.0146849
chr1	241630432	241630531	1578017	0	-	0.272727	[0,0.29]	chr1	157611	17	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	26	2	1.85419	2.137385	2.42058	0.0136504	0.00490744	0.0760525	0.0366648
chr7	150331492	150331587	8614704	0	+	0.463158	(0.455,0.49]	chr7	657695	5	UTR3	UTR3:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	17	71	2	2.0223	2.137375	2.25245	0.0025291	8.55866e-4	0.0233955	0.00998783
chr1	113973710	113973809	418212	0	+	0.353535	(0.33,0.36]	chr1	41199	3	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000369555.6:ENST00000340480.8:ENST00000369553.5:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	11	37	2	1.94147	2.137345	2.33322	0.0049844	0.00451613	0.0370021	0.0350603
chr2	61485864	61485962	2690424	0	-	0.428571	(0.42,0.455]	chr2	240338	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000461407.5:ENST00000492182.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	66	2	1.95234	2.137235	2.32213	0.00195087	0.00108241	0.0185958	0.0124971
chr6	96555079	96555177	7281674	0	+	0.255102	[0,0.29]	chr6	561255	17	UTR3	UTR3:EXON_MRNA	UFL1	ENSG00000014123.10	ENST00000369278.5	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.11932	2.1371000000000002	2.15488	0.0436536	0.0332641	0.170594	0.137922
chr7	77639970	77640069	8350347	0	+	0.282828	[0,0.29]	chr7	637063	8	UTR3	UTR3:EXON_MRNA	PTPN12	ENSG00000127947.16	ENST00000248594.11	protein_coding	protein_coding	protein_coding	protein_coding	4	13	2	2.11932	2.1371000000000002	2.15488	0.0436536	0.0332641	0.170594	0.137922
chr9	112220287	112220386	10802885	0	-	0.535354	(0.53,0.59]	chr9	818409	27	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	40	209	2	1.75907	2.1370750000000003	2.51508	0.00138287	9.12609e-6	0.014925	2.54613e-4
chr11	10797432	10797527	12272533	0	-	0.357895	(0.33,0.36]	chr11	948968	5	UTR3	UTR3:EXON_MRNA	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	46	2	1.43576	2.1369	2.83804	0.040323	8.57053e-5	0.163285	0.00160731
chrX	153694343	153694394	18915630	0	+	0.607843	(0.59,1]	chrX	1611194	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	87	2	1.89154	2.13682	2.3821	0.00669054	0.00554753	0.0465167	0.0417049
chr7	121296845	121296944	8496838	0	+	0.383838	(0.36,0.39]	chr7	648451	13	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	17	70	2	1.74874	2.13658	2.52442	0.0142811	5.31597e-5	0.0780385	0.00108035
chr1	16397369	16397466	72970	0	+	0.505155	(0.49,0.53]	chr1	8467	24	UTR3	UTR3:EXON_MRNA	SZRD1	ENSG00000055070.17	ENST00000401089.3:ENST00000401088.9:ENST00000492354.1	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.75643	2.13657	2.51671	0.0293825	0.00768763	0.129773	0.050396
chr1	44750441	44750502	173882	0	+	0.590164	(0.59,1]	chr1	22328	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	67	2	1.58352	2.13636	2.6892	0.0477456	0.00147019	0.179958	0.0149767
chr14	101906433	101906533	14494686	0	+	0.42	(0.39,0.42]	chr14	1132892	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000557268.5:ENST00000350249.7:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556218.5:ENST00000557716.2:ENST00000561006.5:ENST00000555237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	53	2	1.75695	2.13631	2.51567	0.0126299	3.21874e-4	0.0718207	0.00461043
chr1	235111576	235111674	1560088	0	-	0.326531	(0.29,0.33]	chr1	156012	24	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	24	71	2	1.94683	2.136225	2.32562	8.57415e-4	5.40155e-4	0.0100052	0.00746288
chr2	32525545	32525628	1714144	0	+	0.433735	(0.42,0.455]	chr2	168301	2	CDS	CDS:EXON_MRNA	BIRC6	ENSG00000115760.14	ENST00000421745.6:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	19	2	1.93033	2.13612	2.34191	0.0505055	0.0159091	0.181202	0.0854674
chr9	107330901	107330997	10410555	0	+	0.333333	(0.33,0.36]	chr9	784033	14	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	2.10153	2.136055	2.17058	0.01664	0.00871844	0.0878065	0.0560911
chrX	110003682	110003774	18819232	0	+	0.565217	(0.53,0.59]	chrX	1603892	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	24	2	1.89806	2.136025	2.37399	0.0532477	0.0126178	0.184818	0.0717599
chr17	63589172	63589270	16317545	0	+	0.55102	(0.53,0.59]	chr17	1323671	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	24	2	1.90953	2.135985	2.36244	0.0517711	0.0131162	0.193577	0.073569
chr1	225401785	225401880	1528052	0	-	0.347368	(0.33,0.36]	chr1	152775	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	42	2	1.76184	2.135905	2.50997	0.00863184	9.74806e-4	0.0556009	0.0116117
chr10	68572277	68572338	11089913	0	+	0.442623	(0.42,0.455]	chr10	842869	2	UTR5	UTR5:EXON_MRNA	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	2.07474	2.13574	2.19674	0.0338882	0.0254904	0.139841	0.117089
chr4	26430907	26431007	4766679	0	+	0.47	(0.455,0.49]	chr4	394280	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RBPJ	ENSG00000168214.21	ENST00000342295.6:ENST00000512671.6:ENST00000345843.8:ENST00000361572.10:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000681856.1:ENST00000681025.1:ENST00000681679.1:ENST00000355476.8:ENST00000680140.1:ENST00000680511.1:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000342320.8:ENST00000504907.5:ENST00000681264.1:ENST00000505727.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	32	2	2.04847	2.1356450000000002	2.22282	0.0192065	0.00483628	0.0943643	0.0366328
chr4	150908659	150908758	5731955	0	-	0.454545	(0.42,0.455]	chr4	452973	1	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	37	2	1.99701	2.1350949999999997	2.27318	0.0235036	0.00211298	0.111072	0.0198008
chr6	27132650	27132750	7648717	0	-	0.61	(0.59,1]	chr6	582718	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	13	119	2	1.89154	2.13506	2.37858	0.00669054	0.00108351	0.0465167	0.0125084
chr17	65013858	65013957	16642819	0	-	0.383838	(0.36,0.39]	chr17	1368930	47	UTR3	UTR3:EXON_MRNA	GNA13	ENSG00000120063.10	ENST00000439174.7:ENST00000541118.1	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	1.63825	2.1347	2.63115	0.0311278	0.0245975	0.130473	0.114841
chr3	47675474	47675531	4162650	0	-	0.385965	(0.36,0.39]	chr3	348374	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	21	2	1.63825	2.1347	2.63115	0.0311278	0.0245975	0.130473	0.114841
chrX	119468443	119468515	18841498	0	+	0.680556	(0.59,1]	chrX	1605548	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC25A5	ENSG00000005022.6	ENST00000475354.1:ENST00000317881.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	110	2	1.59965	2.134185	2.66872	0.0213848	3.72466e-4	0.102792	0.00518562
chr1	167918225	167918322	1349099	0	-	0.360825	(0.36,0.39]	chr1	138224	17	UTR3	UTR3:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8	protein_coding	protein_coding	protein_coding	protein_coding	12	45	2	2.09786	2.134125	2.17039	0.00658605	0.0015037	0.0454205	0.0152588
chr16	28834505	28834599	15620375	0	+	0.744681	(0.59,1]	chr16	1238466	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000565845.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	13	120	2	1.72077	2.13402	2.54727	0.0137395	4.22687e-4	0.0760883	0.00573872
chr7	2375388	2375457	8096303	0	+	0.507246	(0.49,0.53]	chr7	618910	1	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	37	2	1.64924	2.133505	2.61777	0.0286659	0.00172617	0.126175	0.0178146
chrX	48575180	48575280	18692218	0	+	0.52	(0.49,0.53]	chrX	1594194	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RBM3	ENSG00000102317.18	ENST00000472897.5:ENST00000376759.8:ENST00000488216.5:ENST00000466764.5:ENST00000490127.5:ENST00000489344.5:ENST00000491240.5:ENST00000485213.1:ENST00000376755.1:ENST00000491236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	74	2	1.56381	2.13348	2.70315	0.0153375	5.46709e-5	0.0832114	0.00121676
chr8	11838708	11838807	9202069	0	+	0.464646	(0.455,0.49]	chr8	703065	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	64	2	1.59145	2.13346	2.67547	0.0145698	1.17184e-4	0.0794847	0.00205703
chr22	20554935	20554944	18298865	0	+	0.333333	(0.33,0.36]	chr22	1553464	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5:ENST00000457322.5:ENST00000428629.5:ENST00000424287.5:ENST00000423862.5:ENST00000420849.5:ENST00000487550.5:ENST00000476767.5:ENST00000492381.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	15	2	1.97842	2.1331700000000002	2.28792	0.0469469	0.0239159	0.171977	0.112531
chr15	41300438	41300538	14885425	0	+	0.3	(0.29,0.33]	chr15	1169280	25	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	7	22	2	1.81246	2.133095	2.45373	0.0178891	0.0156405	0.0937046	0.084273700000000007
chr2	36847462	36847561	2594588	0	-	0.313131	(0.29,0.33]	chr2	233508	99	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.81246	2.133095	2.45373	0.0178891	0.0156405	0.0937046	0.084273700000000007
chr4	143905507	143905563	5696271	0	-	0.446429	(0.42,0.455]	chr4	451461	1	UTR5	UTR5:EXON_MRNA	GYPE	ENSG00000197465.14	ENST00000358615.9:ENST00000506264.5:ENST00000437468.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	26	2	1.51372	2.13301	2.7523	0.0346574	0.0153283	0.141505	0.0828908
chr21	39342712	39342812	18257064	0	-	0.27	[0,0.29]	chr21	1548152	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	26	2	2.11113	2.133005	2.15488	0.0436536	0.00342811	0.170594	0.0283582
chr4	169722795	169722892	5218219	0	+	0.319588	(0.29,0.33]	chr4	420942	29	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	2.02337	2.132815	2.24226	0.0306054	0.0217631	0.130226	0.103469
chr1	29117111	29117209	121620	0	+	0.5	(0.49,0.53]	chr1	14751	4	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000343067.9:ENST00000490308.2:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	86	2	1.89161	2.13278	2.37395	0.00594773	1.13306e-4	0.0430241	0.00201122
chr19	38717085	38717162	17323620	0	+	0.623377	(0.59,1]	chr19	1434323	1	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000489451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	69	2	1.79051	2.13274	2.47497	0.0396851	0.00177395	0.161349	0.0172819
chr22	21761649	21761748	18442367	0	-	0.424242	(0.42,0.455]	chr22	1572508	21	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	12	51	2	2.07515	2.132465	2.18978	0.00355167	0.00239083	0.0300064	0.0217482
chr6	27807806	27807906	7649605	0	-	0.64	(0.59,1]	chr6	582802	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC13	ENSG00000185130.5	ENST00000377401.3	protein_coding	protein_coding	protein_coding	protein_coding	5	50	2	1.96416	2.13151	2.29886	0.044741	0.00759671	0.166115	0.0505607
chr9	133349550	133349593	10503283	0	+	0.534884	(0.53,0.59]	chr9	794225	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000496554.5:ENST00000468019.5:ENST00000426651.1:ENST00000315731.4:ENST00000485706.5:ENST00000489392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	44	2	1.93217	2.1315049999999998	2.33084	0.0149802	0.00283321	0.0814081	0.0252865
chr1	203853799	203853899	670653	0	+	0.41	(0.39,0.42]	chr1	67653	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZC3H11A:ZBED6	ENSG00000058673.17:ENSG00000257315.3	ENST00000367210.3:ENST00000638800.1:ENST00000639812.1:ENST00000332127.8:ENST00000550078.2:ENST00000495527.5:ENST00000640465.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	25	2	2.11399	2.131495	2.149	0.0149155	0.014455	0.0812412	0.0787564
chr16	11846694	11846768	15856765	0	-	0.418919	(0.39,0.42]	chr16	1266802	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000570767.5:ENST00000572090.5:ENST00000571988.5:ENST00000573791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	2.11399	2.131495	2.149	0.0149155	0.014455	0.0812412	0.0787564
chr3	184171642	184171740	3948120	0	+	0.581633	(0.53,0.59]	chr3	331990	10	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	8	44	2	1.94437	2.131485	2.3186	0.0143432	0.00299541	0.0783202	0.0256157
chr21	39342413	39342513	18257061	0	-	0.32	(0.29,0.33]	chr21	1548152	2	UTR3	UTR3:EXON_MRNA	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	31	2	1.75944	2.1313649999999997	2.50329	0.0226161	0.00142661	0.107244	0.0146595
chr18	8916790	8916887	16750726	0	+	0.474227	(0.455,0.49]	chr18	1381318	1	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	27	108	2	2.01845	2.1313500000000003	2.24425	3.93361e-4	3.51222e-4	0.00584829	0.00492346
chr1	156310623	156310689	1314038	0	-	0.560606	(0.53,0.59]	chr1	133407	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368261.7:ENST00000368262.7:ENST00000472765.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	29	2	2.0404	2.131235	2.22207	0.0362529	0.00910511	0.148525	0.0576716
chr16	74305445	74305512	15739426	0	+	0.552239	(0.53,0.59]	chr16	1254005	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000563150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	25	2	1.61377	2.13107	2.64837	0.0436338	0.0199467	0.170594	0.0984041
chr7	6040891	6040973	8662582	0	-	0.451219	(0.42,0.455]	chr7	662569	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000495565.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	65	2	1.87571	2.13097	2.38623	0.0138685	1.93074e-4	0.0760883	0.00307005
chr8	144789803	144789903	10150924	0	-	0.62	(0.59,1]	chr8	764113	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL8	ENSG00000161016.18	ENST00000534781.1:ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	34	305	2	2.03176	2.1309699999999996	2.23018	0.00145159	1.58723e-4	0.0155886	0.00262893
chr3	31626040	31626127	3392392	0	+	0.425287	(0.42,0.455]	chr3	295080	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	73	2	1.44978	2.1309649999999998	2.81215	0.0463803	1.48635e-5	0.177188	3.81697e-4
chr16	74621592	74621689	16032584	0	-	0.494845	(0.49,0.53]	chr16	1287407	3	UTR3	UTR3:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.76393	2.13095	2.49797	0.0279906	0.00843736	0.123926	0.0546021
chr2	131282362	131282461	2067110	0	+	0.525253	(0.49,0.53]	chr2	194209	26	INTRON	INTRON	PLEKHB2:FAR2P4	ENSG00000115762.16:ENSG00000231431.7	ENST00000404460.5:ENST00000560285.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	6	28	2	1.76393	2.13095	2.49797	0.0279906	0.00843736	0.123926	0.0546021
chrX	107650577	107650642	18813955	0	+	0.492308	(0.49,0.53]	chrX	1603305	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	PRPS1	ENSG00000147224.13	ENST00000643795.2:ENST00000372435.10:ENST00000644642.1:ENST00000675875.1:ENST00000372428.9:ENST00000675263.1:ENST00000676322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	2.12684	2.130925	2.13501	0.0287874	0.0134683	0.128869	0.0744999
chr5	134780246	134780343	6231251	0	+	0.402062	(0.39,0.42]	chr5	485342	22	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	1.99911	2.13091	2.2627100000000002	0.0477207	0.0192666	0.17993	0.0966228
chr6	113958707	113958766	7903123	0	-	0.40678	(0.39,0.42]	chr6	605436	2	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000425835.6:ENST00000523628.5:ENST00000521610.5:ENST00000522371.5:ENST00000521163.5:ENST00000518690.5:ENST00000523240.5:ENST00000521233.1:ENST00000520895.5:ENST00000524334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	1.99911	2.13091	2.2627100000000002	0.0477207	0.0192666	0.17993	0.0966228
chr3	129315162	129315260	4444053	0	-	0.612245	(0.59,1]	chr3	369338	5	UTR3	UTR3:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	13	118	2	1.44632	2.130595	2.81487	0.0306753	1.6995e-4	0.130512	0.00276512
chr1	26924088	26924154	111792	0	+	0.454545	(0.42,0.455]	chr1	13485	1	CDS	CDS:UTR5:EXON_MRNA	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.44978	2.1305750000000003	2.81137	0.0463803	0.0120386	0.177188	0.0700876
chr16	21983087	21983144	15587030	0	+	0.473684	(0.455,0.49]	chr16	1235488	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5:ENST00000561798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	61	2	1.80405	2.130405	2.45676	0.017721400000000002	1.78068e-4	0.0918323	0.00288429
chrX	154352552	154352613	19277998	0	-	0.557377	(0.53,0.59]	chrX	1638260	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000474358.5:ENST00000466325.1:ENST00000415241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	1.60161	2.130275	2.65894	0.0451605	0.0193255	0.167576	0.0943643
chr1	26779310	26779406	111005	0	+	0.458333	(0.455,0.49]	chr1	13354	4	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr11	57672700	57672798	11951849	0	+	0.469388	(0.455,0.49]	chr11	914646	8	UTR5	UTR5:EXON_MRNA:INTRON	ZDHHC5	ENSG00000156599.11	ENST00000527985.5:ENST00000528177.5:ENST00000287169.8	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr14	73219386	73219484	14395307	0	+	0.469388	(0.455,0.49]	chr14	1124568	2	UTR3	UTR3:EXON_MRNA	PSEN1	ENSG00000080815.19	ENST00000357710.8:ENST00000324501.10:ENST00000394164.5:ENST00000406768.1:ENST00000555867.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr3	160496305	160496405	4553048	0	-	0.49	(0.455,0.49]	chr3	376952	14	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr3	185495153	185495234	4625857	0	-	0.481481	(0.455,0.49]	chr3	382049	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM41A	ENSG00000163900.11	ENST00000382227.7:ENST00000475480.5:ENST00000421852.6:ENST00000296254.3:ENST00000467061.1:ENST00000467520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr5	138330986	138331080	6861830	0	-	0.457447	(0.455,0.49]	chr5	525096	1	CDS	CDS:EXON_MRNA	CDC25C	ENSG00000158402.21	ENST00000323760.11:ENST00000415130.6:ENST00000648466.1:ENST00000513970.5:ENST00000514555.5:ENST00000503022.5:ENST00000510119.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr6	113956093	113956151	7903093	0	-	0.482759	(0.455,0.49]	chr6	605428	1	CDS	CDS:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1:ENST00000518756.1:ENST00000425835.6:ENST00000523628.5:ENST00000521610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr7	139307636	139307736	8565446	0	+	0.48	(0.455,0.49]	chr7	653581	99	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr9	125350792	125350872	10461639	0	+	0.4625	(0.455,0.49]	chr9	788130	2	CDS	CDS:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000394104.6:ENST00000312123.13:ENST00000474637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	15	2	1.95898	2.130185	2.30139	0.0530131	0.047107	0.195536	0.172269
chr12	53471722	53471807	12886659	0	+	0.470588	(0.455,0.49]	chr12	1002469	2	CDS	CDS:UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000553064.6:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	160	2	1.96992	2.130175	2.29043	5.41368e-4	3.40127e-5	0.00747864	7.49427e-4
chr16	28835545	28835616	15620389	0	+	0.661972	(0.59,1]	chr16	1238474	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000569318.1:ENST00000566007.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	9	71	2	1.44566	2.130125	2.81459	0.0352473	0.00278977	0.142142	0.0249234
chr2	210431934	210432032	3145311	0	-	0.377551	(0.36,0.39]	chr2	277990	8	UTR3	UTR3:EXON_MRNA	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.72655	2.12983	2.53311	0.033108	0.00345778	0.13754	0.0293796
chrX	65740475	65740572	18716370	0	+	0.484536	(0.455,0.49]	chrX	1596885	7	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	1.62077	2.1297450000000002	2.63872	0.0239989	0.00510378	0.110225	0.0390492
chr10	49955001	49955060	11039454	0	+	0.457627	(0.455,0.49]	chr10	840845	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TIMM23B:TIMM23B-AGAP6	ENSG00000204152.14:ENSG00000178440.8	ENST00000478381.5:ENST00000651259.3:ENST00000651763.1:ENST00000651208.1:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	18	2	1.75044	2.12974	2.50904	0.0463133	0.0310515	0.170072	0.131262
chr22	26560900	26560994	18327469	0	+	0.457447	(0.455,0.49]	chr22	1557407	5	EXON_PSEUDO	EXON_PSEUDO	HMGB1P10	ENSG00000213707.2	ENST00000395823.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	18	2	1.75044	2.12974	2.50904	0.0463133	0.0310515	0.170072	0.131262
chr5	168495375	168495436	6369125	0	+	0.459016	(0.455,0.49]	chr5	494703	2	CDS	CDS:UTR3:EXON_MRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	18	2	1.75044	2.12974	2.50904	0.0463133	0.0310515	0.170072	0.131262
chr6	149631436	149631492	7481481	0	+	0.410714	(0.39,0.42]	chr6	571735	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000207292.1	ENST00000384562.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	9	41	2	1.87119	2.129715	2.38824	0.0373134	6.81913e-4	0.152293	0.00834704
chr2	135783182	135783281	2083397	0	+	0.444444	(0.42,0.455]	chr2	195479	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	73	2	1.87857	2.12963	2.38069	0.00949283	1.44425e-4	0.0596168	0.00242794
chr6	85641291	85641339	7826077	0	-	0.354167	(0.33,0.36]	chr6	599611	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	29	2	1.57515	2.129445	2.68374	0.0299562	0.00194492	0.130016	0.0193053
chr1	155675009	155675096	1310707	0	-	0.505747	(0.49,0.53]	chr1	132553	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1:ENST00000476093.5:ENST00000443231.5:ENST00000496324.5:ENST00000476027.5:ENST00000454523.5:ENST00000466366.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	1.69633	2.12908	2.56183	0.0531914	0.0261296	0.184818	0.118976
chr7	73442467	73442553	8853484	0	-	0.511628	(0.49,0.53]	chr7	675867	3	CDS	CDS:EXON_MRNA	BAZ1B	ENSG00000009954.11	ENST00000339594.9:ENST00000404251.1	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.69633	2.12908	2.56183	0.0531914	0.0261296	0.184818	0.118976
chr6	99400077	99400175	7857614	0	-	0.244898	[0,0.29]	chr6	601745	26	UTR3	UTR3:EXON_MRNA	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	43	2	1.75234	2.12906	2.50578	0.00513681	0.00151355	0.037953	0.0161238
chr9	92278198	92278286	10737435	0	-	0.409091	(0.39,0.42]	chr9	812370	1	CDS	CDS:UTR3:EXON_MRNA	IARS1	ENSG00000196305.19	ENST00000375643.7:ENST00000443024.7:ENST00000447699.7:ENST00000683537.1:ENST00000684726.1:ENST00000683192.1:ENST00000683565.1:ENST00000682756.1:ENST00000684542.1:ENST00000683793.1:ENST00000683817.1:ENST00000682141.1:ENST00000682893.1:ENST00000684557.1:ENST00000498025.2:ENST00000682156.1:ENST00000627121.3:ENST00000683469.1:ENST00000683495.1:ENST00000682578.1:ENST00000682533.1:ENST00000472894.2:ENST00000684757.1:ENST00000684445.1:ENST00000683376.1:ENST00000683679.1:ENST00000683119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	31	2	1.87119	2.1290050000000003	2.38682	0.0373134	0.00228306	0.152293	0.0209856
chr13	45338708	45338776	14005946	0	-	0.426471	(0.42,0.455]	chr13	1098096	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000528619.5:ENST00000529421.5:ENST00000484604.5:ENST00000490277.1:ENST00000533567.5:ENST00000530245.5:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	100	2	1.6338	2.128765	2.62373	0.00572124	2.60232e-5	0.0425574	6.02137e-4
chr14	22833437	22833489	14174848	0	+	0.480769	(0.455,0.49]	chr14	1110356	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MRPL52	ENSG00000172590.18	ENST00000355151.9:ENST00000397496.7:ENST00000556654.5:ENST00000555345.5:ENST00000432849.7:ENST00000553711.5:ENST00000556465.5:ENST00000397505.2:ENST00000557221.1:ENST00000311892.10:ENST00000556840.5:ENST00000461594.5:ENST00000555536.1:ENST00000553965.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	23	2	1.98188	2.1284	2.27492	0.0226804	0.0193827	0.105116	0.0943643
chr11	65506116	65506173	11985019	0	+	0.614035	(0.59,1]	chr11	920415	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1:ENSG10010138099.1	ENSG00000251562.8:ENSG00000274072.1	ENST00000619449.2:ENST00000534336.1:ENST00000610851.1:ENST00000618227.1:ENST00000617489.1:ENST00000616691.1:ENST00000611300.1	sRNA	sRNA	sRNA:lncRNA	sRNA:lncRNA	6	49	2	1.66201	2.12831	2.59461	0.0277662	0.0259455	0.125327	0.117079
chr21	8209799	8209898	18041115	0	+	0.666667	(0.59,1]	chr21	1530812	5	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2192	19695	2	1.87208	2.12819	2.3843	2.50827e-4	1.0998e-5	0.00378499	3.27188e-4
chr1	42926418	42926515	966971	0	-	0.536082	(0.53,0.59]	chr1	101864	12	UTR3	UTR3:EXON_MRNA	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000676254.1:ENST00000674765.1:ENST00000674545.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	85	2	1.62286	2.128045	2.63323	0.00636015	2.91603e-4	0.0449937	0.00463214
chr17	48622317	48622414	16578566	0	-	0.525773	(0.49,0.53]	chr17	1361937	13	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	80	2	1.61411	2.128	2.64189	0.00897979	8.30874e-5	0.0570206	0.00156953
chr1	31289253	31289336	918588	0	-	0.506024	(0.49,0.53]	chr1	96202	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	31	2	1.46766	2.1277999999999997	2.78794	0.0523669	0.00251838	0.194793	0.0226599
chr22	21449004	21449103	18302354	0	+	0.494949	(0.49,0.53]	chr22	1554129	24	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	1.46766	2.1277999999999997	2.78794	0.0523669	0.00251838	0.194793	0.0226599
chr2	47483040	47483131	1785321	0	+	0.263736	[0,0.29]	chr2	172537	2	UTR3	UTR3:EXON_MRNA:INTRON	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	13	2	1.81505	2.1273750000000002	2.4397	0.0409713	0.0388194	0.163285	0.149227
chr11	62559778	62559837	12409007	0	-	0.542373	(0.53,0.59]	chr11	960940	1	CDS	CDS:UTR3:EXON_MRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	75	373	2	1.98347	2.1273400000000002	2.27121	1.04463e-4	2.01742e-5	0.00186976	5.39199e-4
chr12	53479537	53479633	12886740	0	+	0.291667	(0.29,0.33]	chr12	1002482	2	UTR3	UTR3:EXON_MRNA	PCBP2	ENSG00000197111.16	ENST00000546463.6:ENST00000437231.5:ENST00000447282.5:ENST00000359282.9:ENST00000549863.5:ENST00000359462.9:ENST00000552296.6:ENST00000552819.5:ENST00000455667.7:ENST00000439930.7:ENST00000548933.5:ENST00000562264.5:ENST00000550585.5:ENST00000547859.2:ENST00000547048.5:ENST00000550733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	80	242	2	1.55485	2.1272900000000003	2.69973	0.00204014	2.43723e-7	0.0200231	1.19968e-5
chr1	244856096	244856134	1591298	0	-	0.368421	(0.36,0.39]	chr1	158398	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1:ENST00000640119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	38	2	1.89703	2.12724	2.35745	0.0150863	0.00143393	0.0821417	0.0147046
chr2	46904962	46905062	2629832	0	-	0.41	(0.39,0.42]	chr2	236786	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCFD2	ENSG00000180398.13	ENST00000444761.6:ENST00000409800.5:ENST00000409913.5:ENST00000319466.9:ENST00000409105.5:ENST00000649435.1:ENST00000493804.1:ENST00000409207.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	21	2	1.87119	2.12716	2.38313	0.0373134	0.0128066	0.152293	0.0725185
chr7	135598067	135598137	8552810	0	+	0.542857	(0.53,0.59]	chr7	652757	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000462316.5:ENST00000607647.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.90953	2.12707	2.34461	0.0517711	0.0457008	0.193577	0.168044
chr4	82371527	82371584	5493650	0	-	0.578947	(0.53,0.59]	chr4	439994	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	50	2	1.40945	2.127015	2.84458	0.0385441	5.21436e-4	0.157058	0.00674101
chr14	21269395	21269494	14521122	0	-	0.585859	(0.53,0.59]	chr14	1137302	2	UTR5	UTR5:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000556226.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1:ENST00000557033.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	99	2	2.01722	2.1269299999999998	2.23664	0.00173892	3.76726e-4	0.017932	0.00523508
chr5	181188908	181188998	7008589	0	-	0.488889	(0.455,0.49]	chr5	537235	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC01962	ENSG00000248473.2	ENST00000658296.1:ENST00000655600.1	lncRNA	lncRNA	lncRNA	lncRNA	23	91	2	1.45775	2.12684	2.79593	0.0113444	1.67248e-5	0.0665522	4.63926e-4
chr4	176330679	176330776	5242248	0	+	0.319588	(0.29,0.33]	chr4	421869	25	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	17	50	2	1.56493	2.126765	2.6886	0.0173025	1.17904e-4	0.0909054	0.00206655
chr4	102797316	102797414	5563926	0	-	0.357143	(0.33,0.36]	chr4	444349	31	UTR3	UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12:ENST00000504211.5:ENST00000505009.5:ENST00000357194.10:ENST00000505207.5:ENST00000507845.5:ENST00000502404.5:ENST00000508635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	49	2	2.04343	2.1266249999999998	2.20982	0.00309464	0.00125321	0.0274272	0.0133145
chr10	70879407	70879506	11103033	0	+	0.535354	(0.53,0.59]	chr10	844675	22	UTR3	UTR3:EXON_MRNA	SGPL1	ENSG00000166224.17	ENST00000373202.8	protein_coding	protein_coding	protein_coding	protein_coding	3	18	2	1.89806	2.126585	2.35511	0.0532477	0.0445399	0.184818	0.172163
chr22	41658301	41658352	18381659	0	+	0.54902	(0.53,0.59]	chr22	1564723	2	CDS	CDS:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2:ENST00000478914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	18	2	1.89806	2.126585	2.35511	0.0532477	0.0445399	0.184818	0.172163
chr3	182918985	182919083	3944907	0	+	0.265306	[0,0.29]	chr3	331294	10	UTR3	UTR3:EXON_MRNA	ATP11B	ENSG00000058063.16	ENST00000323116.10:ENST00000466758.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	18	2	1.84905	2.1265	2.40395	0.0241194	0.0210081	0.110734	0.101116
chr1	205714309	205714408	1461998	0	-	0.484848	(0.455,0.49]	chr1	147460	16	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	15	69	2	1.49358	2.12617	2.75876	0.0259027	3.70068e-5	0.118706	8.05075e-4
chr3	40461961	40462046	3429622	0	+	0.482353	(0.455,0.49]	chr3	298329	1	CDS	CDS:UTR3:EXON_MRNA	RPL14	ENSG00000188846.14	ENST00000338970.10:ENST00000396203.7:ENST00000416518.1:ENST00000435633.5:ENST00000479563.5:ENST00000481798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	109	435	2	2.00075	2.125995	2.25124	4.70957e-5	8.39896e-6	9.7791e-4	2.60516e-4
chr1	155727672	155727738	484477	0	+	0.439394	(0.42,0.455]	chr1	50975	2	CDS	CDS:EXON_MRNA	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5:ENST00000466384.5:ENST00000462978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	2.05515	2.1259449999999998	2.19674	0.0254904	0.017518	0.117089	0.0924156
chr16	81006733	81006815	16053371	0	-	0.707317	(0.59,1]	chr16	1289138	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-314O13.2:CMC2	ENSG00000286221.1:ENSG00000103121.9	ENST00000651611.1:ENST00000652210.1:ENST00000650881.1:ENST00000651567.1:ENST00000652621.1:ENST00000650780.1:ENST00000651816.1:ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	30	2	1.96394	2.1258600000000003	2.28778	0.0556537	0.0453144	0.191528	0.174798
chr2	10129286	10129386	1629047	0	+	0.41	(0.39,0.42]	chr2	161738	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000485717.1:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	1.99911	2.12578	2.25245	0.0477207	0.00427758	0.17993	0.0332717
chr2	231455597	231455624	3226716	0	-	0.37037	(0.36,0.39]	chr2	283840	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	52	2	1.65605	2.1256500000000003	2.59525	0.0163579	2.00567e-4	0.0870858	0.00317675
chr1	629340	629433	467	0	+	0.397849	(0.39,0.42]	chr1	104	4	EXON_PSEUDO	EXON_PSEUDO	MTND1P23	ENSG00000225972.1	ENST00000416931.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	72	243	2	1.6914	2.125575	2.55975	5.84951e-4	3.29261e-6	0.00793559	1.09002e-4
chr10	68959863	68959922	11093161	0	+	0.372881	(0.36,0.39]	chr10	843220	2	CDS	CDS:UTR5:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.82984	2.12549	2.42114	0.0234753	0.00564641	0.108434	0.0422191
chr5	111497711	111497810	6760987	0	-	0.282828	[0,0.29]	chr5	519141	18	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	13	39	2	1.73193	2.12542	2.51891	0.0218934	3.62294e-4	0.104942	0.00507215
chr16	11872718	11872818	15856874	0	-	0.38	(0.36,0.39]	chr16	1266839	47	UTR3	UTR3:EXON_MRNA	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5	protein_coding	protein_coding	protein_coding	protein_coding	27	94	2	2.03558	2.1251249999999997	2.21467	6.81357e-4	2.05836e-4	0.00876781	0.00322869
chr5	157976860	157976956	6936737	0	-	0.291667	(0.29,0.33]	chr5	531351	2	EXON_SMALL	EXON_SMALL	RNU2-48P	ENSG00000222626.1	ENST00000410694.1	snRNA	snRNA	snRNA	snRNA	41	138	2	1.5259	2.12501	2.72412	0.00738883	8.96764e-7	0.0492116	3.64729e-5
chr16	2767275	2767374	15494948	0	+	0.616162	(0.59,1]	chr16	1227802	59	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.57004	2.125	2.67996	0.0364827	0.00470478	0.145024	0.0363963
chr4	75644235	75644334	5472855	0	-	0.494949	(0.49,0.53]	chr4	438361	25	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	73	2	1.56346	2.124995	2.68653	0.00560157	0.00122977	0.040906	0.013593
chr5	10250340	10250440	5874509	0	+	0.58	(0.53,0.59]	chr5	461839	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000508451.1:ENST00000423695.6:ENST00000512975.5:ENST00000510326.5:ENST00000625723.1:ENST00000503454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	97	2	1.85482	2.1241	2.39338	0.00266514	2.70551e-4	0.0233394	0.00436142
chr6	35468946	35469027	7130846	0	+	0.555556	(0.53,0.59]	chr6	549011	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL10A	ENSG00000198755.11	ENST00000322203.7:ENST00000467020.5:ENST00000464112.5:ENST00000478340.2:ENST00000490335.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	187	2	2.01083	2.123935	2.23704	3.13333e-4	9.51771e-5	0.00451944	0.00189441
chr12	74541274	74541373	12961072	0	+	0.393939	(0.39,0.42]	chr12	1010219	30	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	9	37	2	2.02663	2.123785	2.22094	0.0130764	0.00278158	0.0729985	0.0241009
chr2	86777351	86777449	1928629	0	+	0.55102	(0.53,0.59]	chr2	181779	41	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	9	49	2	2.0693	2.123605	2.17791	0.0160468	0.00204468	0.0860154	0.0193012
chr11	5341952	5342042	12241512	0	-	0.366667	(0.36,0.39]	chr11	946160	2	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	35	2	1.94692	2.1232949999999997	2.29967	0.0192083	0.0019325	0.0943643	0.0184661
chr5	168549690	168549790	6968914	0	-	0.38	(0.36,0.39]	chr5	532791	13	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.61529	2.12322	2.63115	0.0466766	0.0245975	0.171348	0.114841
chr15	41332957	41333050	14885754	0	+	0.55914	(0.53,0.59]	chr15	1169295	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000559046.5:ENST00000414849.6:ENST00000450592.6:ENST00000559596.6:ENST00000558582.5:ENST00000560747.5:ENST00000559659.1:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	32	2	1.60161	2.12318	2.64475	0.0451605	0.00453071	0.167576	0.0351187
chr1	17422704	17422770	874166	0	-	0.575758	(0.53,0.59]	chr1	89646	1	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.77634	2.12317	2.47	0.025972	0.0089333	0.117079	0.0567495
chr20	56368069	56368168	17834383	0	+	0.393939	(0.39,0.42]	chr20	1507875	19	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	11	41	2	1.76074	2.12315	2.48556	0.00821762	0.00384158	0.0534646	0.0320512
chr1	39575863	39575951	953090	0	-	0.625	(0.59,1]	chr1	100598	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000451091.2:ENST00000531243.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	40	2	1.88006	2.122995	2.36593	0.0554008	0.0141097	0.191173	0.077233
chr12	53413106	53413204	12886199	0	+	0.326531	(0.29,0.33]	chr12	1002329	20	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.79203	2.1228800000000003	2.45373	0.0156405	0.00781937	0.084273700000000007	0.0511606
chr8	144396347	144396423	10148643	0	-	0.578947	(0.53,0.59]	chr8	763589	1	CDS	CDS:EXON_MRNA:INTRON	CPSF1	ENSG00000071894.17	ENST00000616140.2:ENST00000620219.4:ENST00000531042.5:ENST00000527827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	28	2	1.88327	2.122855	2.36244	0.0298124	0.0131162	0.129773	0.073569
chr11	61402836	61402934	12404514	0	-	0.316327	(0.29,0.33]	chr11	960350	3	UTR3	UTR3:EXON_MRNA	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	1.50081	2.122455	2.7441	0.0510523	0.00173745	0.182134	0.0179204
chr21	33553109	33553208	18101188	0	+	0.454545	(0.42,0.455]	chr21	1534527	25	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	30	2	1.9028	2.1223549999999998	2.34191	0.0159091	0.0112346	0.0854674	0.0665375
chr9	83661786	83661886	10710362	0	-	0.45	(0.42,0.455]	chr9	810179	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	46	2	1.99701	2.122315	2.24762	0.0235036	9.46614e-4	0.111072	0.010681
chr10	59792518	59792618	11517224	0	-	0.34	(0.33,0.36]	chr10	877718	39	UTR3	UTR3:EXON_MRNA	CCDC6	ENSG00000108091.11	ENST00000263102.7:ENST00000491922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	34	2	2.0236	2.12231	2.22102	0.00736622	0.00482576	0.0490627	0.0365854
chr18	31546743	31546841	16809167	0	+	0.408163	(0.39,0.42]	chr18	1386482	1	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	13	51	2	2.04559	2.122175	2.19876	0.00372927	0.00203211	0.031224	0.0192091
chr5	62487770	62487861	5994846	0	+	0.318681	(0.29,0.33]	chr5	469736	1	CDS	CDS:EXON_MRNA:INTRON	RP11-95I19.4:IPO11	ENSG00000288643.1:ENSG00000086200.17	ENST00000509663.2:ENST00000424533.5:ENST00000325324.11:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	20	2	2.00201	2.122135	2.24226	0.0306054	0.0134564	0.130226	0.0744942
chr5	10254673	10254765	5874556	0	+	0.434783	(0.42,0.455]	chr5	461852	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCT5	ENSG00000150753.12	ENST00000503026.5:ENST00000515390.5:ENST00000511700.1:ENST00000280326.9:ENST00000508451.1:ENST00000423695.6:ENST00000512975.5:ENST00000625723.1:ENST00000503454.5:ENST00000515676.5:ENST00000506600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	36	2	1.77028	2.1220350000000003	2.47379	0.0100387	0.00996858	0.0623355	0.0621728
chr11	9442080	9442138	11792856	0	+	0.413793	(0.39,0.42]	chr11	902934	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	1.63008	2.122	2.61392	0.0358647	0.0017565	0.147298	0.0171455
chr1	154251480	154251566	479945	0	+	0.534884	(0.53,0.59]	chr1	49665	1	CDS	CDS:EXON_MRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000428931.6:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	11	57	2	1.53214	2.121975	2.71181	0.0250428	3.99651e-4	0.116782	0.0054764
chr5	126811835	126811898	6202594	0	+	0.444444	(0.42,0.455]	chr5	483188	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1:ENST00000494185.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	38	2	1.86513	2.12164	2.37815	0.0357107	0.00123168	0.147298	0.0131094
chr4	121818856	121818913	5626287	0	-	0.368421	(0.36,0.39]	chr4	448541	2	CDS	CDS:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	19	68	2	2.04431	2.1215349999999997	2.19876	0.00169226	7.60613e-4	0.0175793	0.00908813
chr7	152181503	152181602	9135376	0	-	0.464646	(0.455,0.49]	chr7	698409	9	CDS	CDS:UTR3:EXON_MRNA:INTRON	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000680877.1:ENST00000679560.1:ENST00000683200.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000683159.1:ENST00000558665.2:ENST00000679645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	43	2	1.64975	2.1215200000000003	2.59329	0.0228527	7.86326e-4	0.108215	0.00929193
chr16	9107632	9107731	15534207	0	+	0.434343	(0.42,0.455]	chr16	1230410	45	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C16orf72:RP11-473I1.9	ENSG00000182831.12:ENSG00000263244.2	ENST00000327827.12:ENST00000574285.2:ENST00000574616.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	31	2	1.7601	2.121345	2.48259	0.0312663	0.0031851	0.132093	0.0267166
chr18	39335494	39335583	17084567	0	-	0.516854	(0.49,0.53]	chr18	1403466	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	MIR924HG:RPL7AP66	ENSG00000267374.2:ENSG00000175886.10	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000664913.1:ENST00000591469.1:ENST00000654837.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000667701.1:ENST00000652839.1:ENST00000663244.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000666091.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000588490.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	6	30	2	1.69633	2.120955	2.54558	0.0531914	0.0024326	0.184818	0.0228485
chr6	31828721	31828817	7116694	0	+	0.6875	(0.59,1]	chr6	546209	8	CDS	CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	18	145	2	1.55254	2.12095	2.68936	0.0110219	3.68888e-4	0.0665375	0.00553884
chr21	44806507	44806606	18277275	0	-	0.555556	(0.53,0.59]	chr21	1550219	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	2.0404	2.120665	2.20093	0.0362529	0.00507963	0.148525	0.037544
chrM	8169	8269	19377219	0	+	0.41	(0.39,0.42]	chrM	1649809	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	89	329	2	2.03663	2.12048	2.20433	4.90764e-5	1.45594e-5	0.00111664	3.7562e-4
chr22	40972488	40972579	18378054	0	+	0.32967	(0.29,0.33]	chr22	1564053	1	UTR3	UTR3:EXON_MRNA	RBX1	ENSG00000100387.9	ENST00000216225.9:ENST00000467617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	26	2	1.88142	2.120365	2.35931	0.0142455	0.00615202	0.0779233	0.0438642
chr1	207774142	207774241	690013	0	+	0.323232	(0.29,0.33]	chr1	70092	34	INTRON	INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000636114.1:ENST00000488596.5:ENST00000490278.1:ENST00000471987.1:ENST00000462968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	19	2	1.78695	2.12034	2.45373	0.0289406	0.0156405	0.127328	0.084273700000000007
chr15	34944357	34944428	15207542	0	-	0.380282	(0.36,0.39]	chr15	1197425	2	CDS	CDS:EXON_MRNA	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6:ENST00000560117.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	1.85489	2.120265	2.38564	0.0476159	0.0350721	0.17993	0.141601
chr7	152148405	152148498	9135019	0	-	0.387097	(0.36,0.39]	chr7	698329	5	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000682040.1:ENST00000683640.1:ENST00000682116.1:ENST00000683120.1:ENST00000681923.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683337.1:ENST00000682629.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683621.1:ENST00000679567.1:ENST00000684391.1:ENST00000684069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	16	2	1.85489	2.120265	2.38564	0.0476159	0.0350721	0.17993	0.141601
chr10	72233214	72233312	11111133	0	+	0.316327	(0.29,0.33]	chr10	845348	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ANAPC16	ENSG00000166295.9	ENST00000615507.4:ENST00000621663.4:ENST00000299381.5:ENST00000478193.5:ENST00000470481.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	22	2	1.89849	2.12026	2.34203	0.0197274	0.010113	0.0983378	0.0626311
chr14	22922741	22922835	14527910	0	-	0.56383	(0.53,0.59]	chr14	1138133	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PRMT5	ENSG00000100462.16	ENST00000397441.6:ENST00000324366.13:ENST00000397440.8:ENST00000476175.6:ENST00000216350.12:ENST00000555454.5:ENST00000454731.6:ENST00000553915.5:ENST00000553897.5:ENST00000557758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	39	2	1.61377	2.120225	2.62668	0.0436338	0.00157636	0.170594	0.015761
chr1	32113432	32113532	126425	0	+	0.37	(0.36,0.39]	chr1	15557	49	INTRON	INTRON	KPNA6	ENSG00000025800.14	ENST00000373625.8:ENST00000471599.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	2.05966	2.119975	2.18029	0.0366015	0.0077769	0.145024	0.0517139
chr1	51783969	51784025	191648	0	+	0.482143	(0.455,0.49]	chr1	24559	2	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	45	2	1.22569	2.119895	3.0141	0.0392732	9.3076e-4	0.15086	0.0111917
chr6	149684001	149684099	8018507	0	-	0.397959	(0.39,0.42]	chr6	612683	10	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000253339.9:ENST00000441107.5:ENST00000542747.5:ENST00000392273.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	35	2	1.85749	2.119675	2.38186	0.00953248	0.00601449	0.0599768	0.0434483
chrX	119618474	119618569	19192005	0	-	0.336842	(0.33,0.36]	chrX	1631521	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.82394	2.119675	2.41541	0.0494504	0.00212038	0.18557	0.0198025
chr12	121429744	121429836	13585748	0	-	0.26087	[0,0.29]	chr12	1069655	8	UTR3	UTR3:EXON_MRNA	KDM2B	ENSG00000089094.19	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000542973.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	16	2	2.08434	2.1196099999999998	2.15488	0.0436536	0.0181581	0.170594	0.0945306
chr17	40280884	40280983	16224353	0	+	0.282828	[0,0.29]	chr17	1312104	28	UTR3	UTR3:EXON_MRNA	WIPF2	ENSG00000171475.14	ENST00000323571.9	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	2.08434	2.1196099999999998	2.15488	0.0436536	0.0181581	0.170594	0.0945306
chr2	69325202	69325300	2718311	0	-	0.27551	[0,0.29]	chr2	241994	56	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	2.08434	2.1196099999999998	2.15488	0.0436536	0.0181581	0.170594	0.0945306
chr4	144110170	144110267	5696538	0	-	0.237113	[0,0.29]	chr4	451524	10	UTR3	UTR3:EXON_MRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	2.08434	2.1196099999999998	2.15488	0.0436536	0.0181581	0.170594	0.0945306
chr1	36296582	36296676	141647	0	+	0.382979	(0.36,0.39]	chr1	17589	1	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.39831	2.1196	2.84089	0.0520783	0.0128123	0.18423900000000001	0.0719798
chr1	23692735	23692759	98633	0	+	0.541667	(0.53,0.59]	chr1	11413	1	CDS	CDS:UTR3:EXON_MRNA	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2:ENST00000482370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	133	2	1.87963	2.11959	2.35955	6.65403e-4	4.95201e-4	0.00820018	0.00694421
chrX	154532187	154532280	19278684	0	-	0.569892	(0.53,0.59]	chrX	1638538	1	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000490651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	28	2	1.78041	2.119425	2.45844	0.0407112	0.00930921	0.163285	0.0587563
chrX	65740863	65740960	18716374	0	+	0.556701	(0.53,0.59]	chrX	1596885	11	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	16	81	2	1.92446	2.119245	2.31403	0.00225291	0.00100221	0.0208311	0.011917
chr17	32367771	32367852	16200623	0	+	0.493827	(0.49,0.53]	chr17	1308187	1	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000584696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	68	2	1.66667	2.119045	2.57142	0.0051388	8.92776e-4	0.0379663	0.0108581
chr20	46484135	46484234	17991356	0	-	0.464646	(0.455,0.49]	chr20	1524727	29	INTRON	INTRON	RP5-981L23.7	ENSG00000283757.1	ENST00000639819.1	lncRNA	lncRNA	lncRNA	lncRNA	38	194	2	1.32782	2.119005	2.91019	0.0179261	1.68173e-7	0.0918323	8.76362e-6
chr2	113714895	113714995	2851400	0	-	0.38	(0.36,0.39]	chr2	254557	83	UTR3	UTR3:EXON_MRNA:INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000420066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	31	2	1.86118	2.11896	2.37674	0.0121414	0.00529284	0.0699297	0.0390084
chr16	1324889	1324986	15486436	0	+	0.628866	(0.59,1]	chr16	1225668	2	UTR3	UTR3:EXON_MRNA	UBE2I	ENSG00000103275.21	ENST00000355803.8:ENST00000325437.9:ENST00000397515.6:ENST00000397514.8:ENST00000567383.6:ENST00000403747.6:ENST00000566587.5:ENST00000406620.6:ENST00000562470.3:ENST00000567074.6:ENST00000677314.1:ENST00000679137.1:ENST00000677987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	66	2	1.58352	2.118835	2.65415	0.0477456	0.00171847	0.179958	0.0168227
chr1	37978987	37979055	950191	0	-	0.470588	(0.455,0.49]	chr1	100095	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1:ENST00000489537.5:ENST00000461869.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	31	2	1.80094	2.11879	2.43664	0.0265942	0.00394058	0.120205	0.0315828
chr12	56645863	56645963	13352195	0	-	0.68	(0.59,1]	chr12	1051776	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	487	2	1.95333	2.11859	2.28385	5.27769e-4	1.13996e-4	0.006804	0.00217707
chr19	5691531	5691621	17210643	0	+	0.611111	(0.59,1]	chr19	1415426	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RPL36	ENSG00000130255.13	ENST00000579649.5:ENST00000577222.5:ENST00000347512.8:ENST00000579446.1:ENST00000394580.2	protein_coding	protein_coding	protein_coding	protein_coding	44	409	2	1.57349	2.1184950000000002	2.6635	0.00601877	9.74086e-6	0.0434777	2.70466e-4
chr16	85673133	85673232	15798084	0	+	0.393939	(0.39,0.42]	chr16	1257094	7	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	70	2	1.7018	2.11837	2.53494	0.00577462	1.68741e-4	0.0426869	0.0027484
chr16	29808569	29808659	15626794	0	+	0.577778	(0.53,0.59]	chr16	1239328	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	MAZ	ENSG00000103495.14	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000561855.1:ENST00000616501.4:ENST00000567444.5:ENST00000568411.5:ENST00000563012.1:ENST00000562557.5:ENST00000568544.5:ENST00000569978.1:ENST00000568282.1:ENST00000565777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	43	2	2.08252	2.118275	2.15403	0.0118065	0.0050389	0.0686664	0.0372588
chr11	65858099	65858187	12423195	0	-	0.659091	(0.59,1]	chr11	964176	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CFL1	ENSG00000172757.13	ENST00000527752.1:ENST00000308162.10:ENST00000525451.6:ENST00000530945.1:ENST00000534769.5:ENST00000531413.5:ENST00000532134.5:ENST00000526975.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	152	2	2.09386	2.1181200000000002	2.14238	0.00219635	0.00147312	0.0203496	0.0157606
chr12	56272089	56272189	13349838	0	-	0.45	(0.42,0.455]	chr12	1051002	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	42	2	1.7601	2.11805	2.476	0.0312663	7.24984e-4	0.132093	0.00869086
chr1	229324841	229324939	1541558	0	-	0.336735	(0.33,0.36]	chr1	154303	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	38	2	1.70162	2.118025	2.53443	0.0112523	0.00171856	0.0665375	0.0177536
chr7	74195208	74195308	8334062	0	+	0.53	(0.49,0.53]	chr7	634970	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	21	92	2	1.84258	2.1179550000000003	2.39333	0.00238064	1.84813e-4	0.0216895	0.00321767
chr1	45627683	45627779	978696	0	-	0.291667	(0.29,0.33]	chr1	103175	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8:ENST00000479235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	25	2	1.61533	2.11779	2.62025	0.0237602	0.00573581	0.112145	0.0417422
chrX	120072431	120072515	19194059	0	-	0.440476	(0.42,0.455]	chrX	1631789	3	UTR3	UTR3:EXON_MRNA	RHOXF2B	ENSG00000203989.5	ENST00000371402.5	protein_coding	protein_coding	protein_coding	protein_coding	14	58	2	2.02584	2.11726	2.20868	0.00222605	0.0019911	0.0205981	0.019572
chr8	58582299	58582392	9351277	0	+	0.322581	(0.29,0.33]	chr8	715167	7	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000523483.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	11	35	2	1.75944	2.117205	2.47497	0.0226161	8.25434e-4	0.107244	0.00968876
chr21	33552116	33552216	18101178	0	+	0.49	(0.455,0.49]	chr21	1534527	15	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	72	2	1.96971	2.1170299999999997	2.26435	0.00317441	4.19137e-4	0.0279054	0.00569363
chr19	58550146	58550215	17413361	0	+	0.666667	(0.59,1]	chr19	1451220	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595974.5:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	19	173	2	1.67177	2.116975	2.56218	0.0099244	1.33549e-4	0.0621142	0.00229039
chr16	28117317	28117389	15903695	0	-	0.486111	(0.455,0.49]	chr16	1273269	1	CDS	CDS:EXON_MRNA:INTRON	XPO6	ENSG00000169180.12	ENST00000304658.10:ENST00000565698.5:ENST00000564905.1:ENST00000562408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	1.95898	2.11695	2.27492	0.047107	0.0193827	0.172269	0.0943643
chr4	55417918	55418000	4843418	0	+	0.390244	(0.39,0.42]	chr4	398968	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMEM165	ENSG00000134851.13	ENST00000381334.10:ENST00000506198.5:ENST00000508404.5:ENST00000514904.5:ENST00000508561.5:ENST00000608091.1:ENST00000509575.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	46	2	1.84551	2.1168750000000003	2.38824	0.0168113	6.81913e-4	0.0886699	0.00834704
chr11	3731483	3731578	12238297	0	-	0.494737	(0.49,0.53]	chr11	945611	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8:ENST00000527104.5:ENST00000529379.1:ENST00000397013.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	41	2	1.78308	2.1168199999999997	2.45056	0.0425234	8.30002e-4	0.167547	0.00973943
chr12	66138059	66138145	13383820	0	-	0.465116	(0.455,0.49]	chr12	1054522	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-745O10.4:TMBIM4	ENSG00000228144.2:ENSG00000155957.18	ENST00000539652.1:ENST00000358230.8:ENST00000544599.5:ENST00000538217.1:ENST00000398033.8:ENST00000613669.4:ENST00000633367.1:ENST00000286424.12:ENST00000545407.5:ENST00000542724.5:ENST00000545504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	2.10347	2.116705	2.12994	0.0313707	0.0304832	0.13127	0.130204
chr6	16266217	16266317	7067554	0	+	0.53	(0.49,0.53]	chr6	540898	77	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	113	2	1.76581	2.11647	2.46713	0.00234375	5.82812e-5	0.0214313	0.00128969
chr10	72274156	72274216	11111163	0	+	0.616667	(0.59,1]	chr10	845351	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	58	2	1.81066	2.116325	2.42199	0.0369806	0.00475078	0.145401	0.0367332
chr11	65121813	65121904	12421571	0	-	0.461538	(0.455,0.49]	chr11	963727	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FAU:SYVN1	ENSG00000149806.11:ENSG00000162298.19	ENST00000529639.6:ENST00000531743.5:ENST00000527548.5:ENST00000525297.5:ENST00000531357.1:ENST00000279259.7:ENST00000529259.1:ENST00000526555.5:ENST00000434372.2:ENST00000530451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	42	2	1.69295	2.11629	2.53963	0.018341	0.00112063	0.0945306	0.0128408
chr1	24669401	24669494	102142	0	+	0.602151	(0.59,1]	chr1	12019	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	72	2	1.66121	2.116275	2.57134	0.0272831	0.00259175	0.120977	0.0237245
chr3	194405327	194405426	4654493	0	-	0.343434	(0.33,0.36]	chr3	384345	28	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	27	2	2.0111	2.11606	2.22102	0.0124964	0.00736622	0.071421	0.0490627
chr16	58163171	58163269	15965657	0	-	0.397959	(0.39,0.42]	chr16	1280935	38	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	22	98	2	1.72693	2.115835	2.50474	0.0111398	2.02119e-5	0.0658033	4.91639e-4
chr1	154273510	154273598	480182	0	+	0.5	(0.49,0.53]	chr1	49753	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HAX1	ENSG00000143575.15	ENST00000457918.6:ENST00000483970.6:ENST00000447768.6:ENST00000328703.12:ENST00000531435.5:ENST00000477780.2:ENST00000532105.1:ENST00000435087.1:ENST00000471326.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	2.01464	2.11583	2.21702	0.0205094	0.00959574	0.0991175	0.0603269
chr12	53019909	53019967	12884423	0	+	0.482759	(0.455,0.49]	chr12	1001744	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1:ENST00000550025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	25	2	1.37968	2.1157	2.85172	0.0536837	0.010864	0.185819	0.0643837
chr1	168245933	168246033	526528	0	+	0.38	(0.36,0.39]	chr1	56538	35	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	2.08671	2.115205	2.1437	0.0340515	0.01635	0.141465	0.0867615
chr2	158634069	158634142	2157884	0	+	0.369863	(0.36,0.39]	chr2	198831	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PKP4	ENSG00000144283.22	ENST00000389759.8:ENST00000426248.7:ENST00000628904.2:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000494945.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	20	2	2.08671	2.115205	2.1437	0.0340515	0.01635	0.141465	0.0867615
chr16	3674416	3674494	15830648	0	-	0.589744	(0.53,0.59]	chr16	1263646	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5:ENST00000574175.1:ENST00000570514.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	32	2	1.85636	2.115175	2.37399	0.0197135	0.0126178	0.0983378	0.0717599
chr17	49411758	49411839	16581221	0	-	0.530864	(0.53,0.59]	chr17	1362378	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PHB	ENSG00000167085.13	ENST00000300408.8:ENST00000511832.6:ENST00000508009.6:ENST00000614445.5:ENST00000504124.6:ENST00000617874.5:ENST00000419140.7:ENST00000446735.6:ENST00000512041.7:ENST00000434917.3:ENST00000393345.8:ENST00000506273.1:ENST00000507748.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	32	2	1.85636	2.115175	2.37399	0.0197135	0.0126178	0.0983378	0.0717599
chr4	105485783	105485882	5026469	0	+	0.454545	(0.42,0.455]	chr4	409127	12	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P9	ENSG00000249264.1	ENST00000514975.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	43	182	2	1.91457	2.11502	2.31547	6.94833e-4	1.87652e-5	0.00876824	4.60644e-4
chr11	64230516	64230601	11979588	0	+	0.717647	(0.59,1]	chr11	918845	2	UTR3	UTR3:UTR5:EXON_MRNA	NUDT22:DNAJC4	ENSG00000149761.9:ENSG00000110011.13	ENST00000534929.1:ENST00000321685.7:ENST00000628077.2:ENST00000355040.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	39	2	2.03921	2.114865	2.19052	0.0371471	0.0237927	0.151849	0.109413
chrM	11743	11842	19377258	0	+	0.414141	(0.39,0.42]	chrM	1649826	10	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	179	643	2	1.73108	2.11479	2.4985	2.52537e-4	2.67371e-7	0.00380854	1.45661e-5
chr12	110720204	110720296	13539217	0	-	0.25	[0,0.29]	chr12	1065103	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	46	132	2	1.57988	2.114565	2.64925	0.004635	1.76769e-6	0.0359044	6.45911e-5
chr8	56960910	56961010	9836800	0	-	0.38	(0.36,0.39]	chr8	744432	31	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	15	56	2	2.09786	2.114455	2.13105	0.00658605	7.18979e-4	0.0454205	0.00862405
chr6	43784921	43785019	7159930	0	+	0.081633	[0,0.29]	chr6	553452	4	UTR3	UTR3:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000425836.7:ENST00000372077.8:ENST00000520948.5:ENST00000230480.10:ENST00000480614.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	26	2	1.94841	2.11441	2.28041	0.0427374	0.00240042	0.168094	0.0217482
chr7	107758706	107758799	8457134	0	+	0.580645	(0.53,0.59]	chr7	646250	7	CDS	CDS:EXON_MRNA	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding	8	42	2	1.84678	2.114345	2.38191	0.0134899	0.00477439	0.0745701	0.0368489
chr6	149379332	149379425	7480757	0	+	0.430108	(0.42,0.455]	chr6	571632	6	CDS	CDS:EXON_MRNA	TAB2	ENSG00000055208.19	ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	29	2	1.75469	2.11424	2.47379	0.0198622	0.00996858	0.0984041	0.0621728
chr6	16265817	16265917	7067550	0	+	0.51	(0.49,0.53]	chr6	540898	73	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	233	2	1.90007	2.11414	2.32821	2.12902e-4	2.96247e-5	0.00359407	6.71154e-4
chr20	50082476	50082573	18004132	0	-	0.371134	(0.36,0.39]	chr20	1525944	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3:ENST00000483534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	85	2	1.80366	2.114135	2.42461	0.00256386	7.37411e-5	0.0229156	0.00155299
chr2	70087565	70087654	1878476	0	+	0.820225	(0.59,1]	chr2	177394	2	UTR5	UTR5:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	17	149	2	1.79433	2.11382	2.43331	0.00591783	5.15628e-4	0.0428167	0.00667434
chr12	110347023	110347115	13085920	0	+	0.532609	(0.53,0.59]	chr12	1020554	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	75	2	2.01641	2.11365	2.21089	0.0108917	4.41064e-4	0.0645168	0.00594106
chr1	20743318	20743417	883102	0	-	0.373737	(0.36,0.39]	chr1	91337	32	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	33	2	1.89703	2.1136049999999997	2.33018	0.0150863	0.0030776	0.0821417	0.0261799
chr3	33868613	33868712	3399924	0	+	0.414141	(0.39,0.42]	chr3	295769	22	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	2.01677	2.11353	2.21029	0.0235818	0.0100911	0.111323	0.0625052
chr14	102004855	102004950	14495374	0	+	0.378947	(0.36,0.39]	chr14	1133061	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000643958.2:ENST00000645114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	19	2	2.05966	2.113415	2.16717	0.0366015	0.0152504	0.145024	0.0828908
chr2	169798923	169798976	2197679	0	+	0.584906	(0.53,0.59]	chr2	201084	2	UTR5	UTR5:EXON_MRNA:INTRON	SSB	ENSG00000138385.16	ENST00000422006.5:ENST00000260956.9:ENST00000417292.5:ENST00000413002.5:ENST00000461708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	2.0728	2.113415	2.15403	0.0118065	0.0086901	0.0686664	0.0559355
chr7	158798008	158798076	9159968	0	-	0.352941	(0.33,0.36]	chr7	699799	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000613624.1:ENST00000483958.5:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	36	2	1.96645	2.11326	2.26007	0.0197415	0.00147262	0.095966	0.0149997
chr10	12170716	12170770	11370424	0	-	0.425926	(0.42,0.455]	chr10	867149	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUDT5	ENSG00000165609.13	ENST00000491614.6:ENST00000378937.7:ENST00000537776.5:ENST00000378952.7:ENST00000476462.5:ENST00000378940.7:ENST00000378927.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	17	2	1.71996	2.113225	2.50649	0.0542346	0.0302857	0.199653	0.130016
chr5	138188692	138188787	6860853	0	-	0.431579	(0.42,0.455]	chr5	524903	12	UTR3	UTR3:EXON_MRNA	CDC23	ENSG00000094880.11	ENST00000394886.7	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.71996	2.113225	2.50649	0.0542346	0.0302857	0.199653	0.130016
chr10	30339025	30339125	11436314	0	-	0.58	(0.53,0.59]	chr10	871981	16	INTRON	INTRON	MTPAP	ENSG00000107951.15	ENST00000263063.9:ENST00000488290.5:ENST00000417581.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	1.87133	2.11322	2.35511	0.0445399	0.0308819	0.172163	0.130016
chr3	12920512	12920596	4042535	0	-	0.583333	(0.53,0.59]	chr3	339425	2	CDS	CDS:EXON_MRNA	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	4	22	2	1.87133	2.11322	2.35511	0.0445399	0.0308819	0.172163	0.130016
chrX	19359751	19359849	18604958	0	+	0.326531	(0.29,0.33]	chrX	1589061	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PDHA1	ENSG00000131828.14	ENST00000540249.5:ENST00000545074.5:ENST00000379806.9:ENST00000422285.7:ENST00000379804.1:ENST00000478795.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	29	2	2.04737	2.11296	2.17855	0.0183673	0.00450176	0.0928041	0.0344286
chr4	169722307	169722405	5218214	0	+	0.357143	(0.33,0.36]	chr4	420942	24	UTR3	UTR3:EXON_MRNA	CLCN3	ENSG00000109572.14	ENST00000513761.6:ENST00000613795.4:ENST00000504131.6	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.93784	2.11288	2.28792	0.0278501	0.0239159	0.123353	0.112531
chr2	84423672	84423745	2768741	0	-	0.369863	(0.36,0.39]	chr2	245480	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000484365.1:ENST00000651342.1:ENST00000491123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	1.89872	2.11275	2.32678	0.056542	0.0193538	0.19417	0.0943643
chr19	34401744	34401840	17300585	0	+	0.416667	(0.39,0.42]	chr19	1429899	12	UTR3	UTR3:EXON_MRNA:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000592740.5:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding	12	46	2	1.85749	2.11266	2.36783	0.00953248	9.23937e-4	0.0599768	0.0111585
chr6	43523100	43523195	7708066	0	-	0.547368	(0.53,0.59]	chr6	591455	9	UTR3	UTR3:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000455854.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	28	2	1.56485	2.111895	2.65894	0.0367536	0.0193255	0.145024	0.0943643
chr22	41515455	41515535	18380934	0	+	0.625	(0.59,1]	chr22	1564570	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000478010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	41	2	1.61229	2.111515	2.61074	0.0434296	0.025486	0.162491	0.117089
chr6	63580564	63580661	7205079	0	+	0.360825	(0.36,0.39]	chr6	556541	5	UTR3	UTR3:EXON_MRNA	PTP4A1:RP5-1148A21.4	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	58	2	1.733	2.111275	2.48955	0.00620836	3.04967e-4	0.0441767	0.00472197
chr12	104349016	104349115	13059144	0	+	0.363636	(0.36,0.39]	chr12	1017716	7	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	33	2	2.04221	2.11125	2.18029	0.0077769	0.00653435	0.0517139	0.0456317
chr11	46382293	46382377	11935301	0	+	0.702381	(0.59,1]	chr11	912486	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDK	ENSG00000110492.16	ENST00000405308.6:ENST00000441869.5:ENST00000490240.5:ENST00000359803.7:ENST00000533952.5:ENST00000617138.4:ENST00000395569.8:ENST00000395566.9:ENST00000533283.5:ENST00000395565.5:ENST00000481047.1:ENST00000489525.5:ENST00000407067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	110	2	1.55349	2.111145	2.6688	0.0244836	4.09982e-4	0.112203	0.00602634
chr12	124012930	124013026	13130930	0	+	0.354167	(0.33,0.36]	chr12	1026671	1	UTR3	UTR3:EXON_MRNA:INTRON	ZNF664:RP11-214K3.25:RFLNA	ENSG00000179195.16:ENSG00000274874.2:ENSG00000178882.15	ENST00000539644.5:ENST00000392404.7:ENST00000618862.2:ENST00000538932.6:ENST00000337815.9:ENST00000389727.8:ENST00000545615.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	17	56	2	2.07332	2.110825	2.14833	0.00253487	0.00104095	0.0233955	0.0115684
chr18	36805373	36805437	17079190	0	-	0.484375	(0.455,0.49]	chr18	1403236	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TPGS2	ENSG00000134779.15	ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9:ENST00000383056.7:ENST00000593035.5:ENST00000590500.5:ENST00000589049.5:ENST00000591823.5:ENST00000585635.5:ENST00000590692.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	32	2	1.69295	2.110145	2.52734	0.018341	0.00792433	0.0945306	0.0523592
chr17	63591529	63591627	16317569	0	+	0.520408	(0.49,0.53]	chr17	1323671	25	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	35	2	1.83331	2.11007	2.38683	0.012654	0.0103144	0.0718207	0.063642
chr7	26213007	26213107	8183128	0	+	0.37	(0.36,0.39]	chr7	624437	9	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	16	55	2	1.3054	2.10986	2.91432	0.038881	4.97991e-5	0.158355	0.00102381
chr21	44861162	44861216	18277527	0	-	0.555556	(0.53,0.59]	chr21	1550269	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	42	2	1.92179	2.10984	2.29789	0.0100259	0.00674768	0.0623334	0.0468196
chr17	35717271	35717349	16207434	0	+	0.474359	(0.455,0.49]	chr17	1309147	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	32	2	1.92777	2.10966	2.29155	0.0286531	0.00354718	0.128685	0.0291792
chr1	171485666	171485735	536526	0	+	0.57971	(0.53,0.59]	chr1	57558	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000392078.7:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	34	2	1.78041	2.109465	2.43852	0.0407112	0.00373745	0.163285	0.0303359
chr6	34589868	34589968	7674099	0	-	0.39	(0.36,0.39]	chr6	588118	27	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	16	63	2	1.74874	2.109365	2.46999	0.0142811	1.11649e-4	0.0780385	0.00198646
chr4	56394853	56394953	5434660	0	-	0.36	(0.33,0.36]	chr4	435047	16	UTR3	UTR3:EXON_MRNA	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000425339.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	17	2	1.69981	2.10934	2.51887	0.0370662	0.0358636	0.147298	0.145667
chr18	9954703	9954801	16756137	0	+	0.336735	(0.33,0.36]	chr18	1381801	6	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	20	72	2	1.73622	2.109335	2.48245	0.0103915	5.27111e-5	0.063428	0.00107537
chr19	3982876	3982947	17430250	0	-	0.619718	(0.59,1]	chr19	1454729	2	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	21	183	2	2.07476	2.10914	2.14352	0.00178234	9.17415e-4	0.0182072	0.0104271
chr16	2821505	2821605	15495173	0	+	0.63	(0.59,1]	chr16	1227882	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	PRSS21	ENSG00000007038.11	ENST00000450020.7:ENST00000005995.8:ENST00000574813.5:ENST00000574265.1:ENST00000575739.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	85	2	1.83568	2.1088899999999997	2.3821	0.0084257	0.00554753	0.0544083	0.0417049
chr16	69462828	69462926	15723948	0	+	0.336735	(0.33,0.36]	chr16	1252041	4	UTR3	UTR3:EXON_MRNA	CYB5B	ENSG00000103018.17	ENST00000307892.13:ENST00000515314.6:ENST00000561792.6:ENST00000568237.1	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	2.07736	2.108505	2.13965	0.0442037	0.0297101	0.172163	0.129986
chr3	196469271	196469369	4665812	0	-	0.336735	(0.33,0.36]	chr3	385954	6	UTR3	UTR3:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	2.07736	2.108505	2.13965	0.0442037	0.0297101	0.172163	0.129986
chr1	162528833	162528932	507551	0	+	0.313131	(0.29,0.33]	chr1	54762	64	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.98817	2.10828	2.22839	0.00889512	0.00486332	0.0565003	0.0374757
chr12	123295407	123295507	13595072	0	-	0.33	(0.29,0.33]	chr12	1070977	64	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.99415	2.108165	2.22218	0.0333928	0.023782	0.140128	0.109413
chr4	140366594	140366683	5676661	0	-	0.483146	(0.455,0.49]	chr4	450635	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	SCOC-AS1:RPL14P3	ENSG00000196951.11:ENSG00000241923.2	ENST00000512692.7:ENST00000658255.1:ENST00000664103.1:ENST00000608178.5:ENST00000609616.1:ENST00000476715.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	7	33	2	1.79605	2.10798	2.41991	0.0427708	0.00192426	0.168094	0.0183914
chr8	123248843	123248942	10056583	0	-	0.363636	(0.36,0.39]	chr8	756544	5	UTR3	UTR3:EXON_MRNA:INTRON	ZHX1-C8orf76:ZHX1	ENSG00000259305.6:ENSG00000165156.15	ENST00000357082.8:ENST00000622816.2:ENST00000297857.3:ENST00000395571.8	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.72655	2.107885	2.48922	0.033108	0.0110399	0.13754	0.0652374
chr17	7311349	7311444	16103931	0	+	0.589474	(0.53,0.59]	chr17	1296304	1	CDS	CDS:EXON_MRNA	EIF5A	ENSG00000132507.18	ENST00000336452.11:ENST00000576930.5:ENST00000572815.5:ENST00000573542.5:ENST00000336458.13:ENST00000419711.6:ENST00000571955.5:ENST00000573714.5:ENST00000416016.2	protein_coding	protein_coding	protein_coding	protein_coding	16	84	2	1.92677	2.10756	2.28835	0.00482553	3.65769e-4	0.0365844	0.0054989
chr6	63685542	63685639	7205621	0	+	0.463918	(0.455,0.49]	chr6	556582	13	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	23	2	2.08503	2.107485	2.12994	0.0304832	0.0158994	0.130204	0.0856643
chr10	32901370	32901469	11443887	0	-	0.252525	[0,0.29]	chr10	872611	12	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	27	2	1.72144	2.107475	2.49351	0.0389538	0.0015585	0.158558	0.0156889
chr6	8097333	8097400	7590162	0	-	0.432836	(0.42,0.455]	chr6	579001	2	CDS	CDS:EXON_MRNA	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10:ENST00000507463.1:ENST00000488226.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	36	2	1.99701	2.107345	2.21768	0.0235036	0.00277726	0.111072	0.0241009
chr12	6578028	6578112	13187144	0	-	0.511905	(0.49,0.53]	chr12	1032269	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000646322.1:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000643367.1:ENST00000646609.1:ENST00000645717.1:ENST00000646145.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	33	2	1.75643	2.107205	2.45798	0.0293825	0.00353238	0.129773	0.029076
chr19	53874885	53874982	17388673	0	+	0.525773	(0.49,0.53]	chr19	1446783	5	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.75643	2.107205	2.45798	0.0293825	0.00353238	0.129773	0.029076
chr1	237603107	237603207	777830	0	+	0.42	(0.39,0.42]	chr1	78185	6	INTRON	INTRON	RYR2	ENSG00000198626.17	ENST00000366574.7:ENST00000360064.7	protein_coding	protein_coding	protein_coding	protein_coding	482	1750	2	2.00351	2.10711	2.21071	1.26538e-5	2.84925e-6	3.6681e-4	9.64791e-5
chr1	95194044	95194143	362127	0	+	0.30303	(0.29,0.33]	chr1	35683	23	UTR3	UTR3:EXON_MRNA:INTRON	TLCD4:TLCD4-RWDD3	ENSG00000152078.10:ENSG00000271092.5	ENST00000370203.9:ENST00000604534.5:ENST00000604203.1	protein_coding	protein_coding	protein_coding	protein_coding	15	52	2	1.75944	2.107025	2.45461	0.0226161	1.31349e-4	0.107244	0.00226622
chr5	132758126	132758223	6836959	0	-	0.350515	(0.33,0.36]	chr5	523097	23	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000481030.1:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	43	2	1.70359	2.1066949999999998	2.5098	0.0245566	3.52363e-4	0.114841	0.00493767
chr1	633428	633528	823365	0	-	0.42	(0.39,0.42]	chr1	81486	4	INTRON	INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	9	35	2	2.03292	2.106585	2.18025	0.00788976	0.00587938	0.0522564	0.0424857
chr18	49491347	49491404	17119624	0	-	0.403509	(0.39,0.42]	chr18	1405594	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000584895.5:ENST00000332968.11:ENST00000577910.1:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000581091.1:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	35	2	2.03292	2.106585	2.18025	0.00788976	0.00587938	0.0522564	0.0424857
chr1	15663997	15664096	69851	0	+	0.383838	(0.36,0.39]	chr1	7811	24	UTR3	UTR3:EXON_MRNA	DDI2	ENSG00000197312.12	ENST00000480945.6	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.72333	2.106275	2.48922	0.0514027	0.0110399	0.18321	0.0652374
chr19	46610111	46610207	17357592	0	+	0.614583	(0.59,1]	chr19	1440686	11	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	119	2	1.49166	2.10625	2.72084	0.0172578	5.97513e-4	0.0911559	0.00808684
chr6	136278137	136278228	7982504	0	-	0.450549	(0.42,0.455]	chr6	610361	4	CDS	CDS:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	41	2	1.87922	2.10602	2.33282	0.00677333	0.00619114	0.0462932	0.0440614
chr12	53411829	53411927	12886186	0	+	0.326531	(0.29,0.33]	chr12	1002329	7	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	16	46	2	1.8523	2.105875	2.35945	0.00590939	6.35788e-4	0.0426963	0.00842569
chr17	76736885	76736972	16692129	0	-	0.689655	(0.59,1]	chr17	1375081	2	CDS	CDS:EXON_MRNA:PRIMIRNA	SRSF2:MIR636	ENSG00000161547.17:ENSG00000283805.1	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000452355.7:ENST00000508921.7:ENST00000384825.1:ENST00000583836.1:ENST00000358156.6	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	13	114	2	1.9169	2.105725	2.29455	0.00499799	0.00231247	0.0383507	0.0211481
chr17	41867213	41867312	16543740	0	-	0.393939	(0.39,0.42]	chr17	1356443	4	UTR3	UTR3:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5	protein_coding	protein_coding	protein_coding	protein_coding	15	54	2	1.60572	2.10565	2.60558	0.0109613	4.23634e-4	0.0665375	0.00613675
chrX	48913465	48913560	19063603	0	-	0.431579	(0.42,0.455]	chrX	1620588	4	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	18	73	2	1.88456	2.105635	2.32671	0.00305099	4.0328e-4	0.0270833	0.00550292
chr7	130134514	130134614	8529070	0	+	0.41	(0.39,0.42]	chr7	651128	39	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	10	39	2	1.94104	2.10558	2.27012	0.00945558	0.00471145	0.0594007	0.0359578
chr12	54232972	54233072	13342856	0	-	0.5	(0.49,0.53]	chr12	1049602	16	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	11	49	2	1.95475	2.10556	2.25637	0.00432074	0.00420813	0.0335176	0.0329484
chr2	229180961	229181061	3217941	0	-	0.52	(0.49,0.53]	chr2	283142	246	INTRON	INTRON	PID1	ENSG00000153823.19	ENST00000482518.6:ENST00000392055.8:ENST00000392054.7:ENST00000409462.1:ENST00000354069.6:ENST00000534952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1672	7008	2	1.92562	2.1054850000000003	2.28535	2.88427e-5	1.03884e-6	6.5679e-4	4.56235e-5
chr2	26190897	26190985	2565634	0	-	0.613636	(0.59,1]	chr2	230525	4	UTR3	UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	61	2	1.90454	2.105385	2.30623	0.0170607	0.0116061	0.0896731	0.0680428
chr15	84670005	84670069	15420854	0	-	0.453125	(0.42,0.455]	chr15	1219607	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000559376.1:ENST00000558217.5:ENST00000558924.1:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	60	2	2.07335	2.105265	2.13718	0.00257517	0.0014031	0.0229531	0.015127699999999999
chr19	48922518	48922613	17367851	0	+	0.631579	(0.59,1]	chr19	1442160	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	56	2	1.96265	2.1047700000000003	2.24689	0.0238491	0.00890458	0.112466	0.0565003
chr7	121124330	121124401	8495093	0	+	0.422535	(0.42,0.455]	chr7	648354	1	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	16	69	2	1.54178	2.104755	2.66773	0.0183605	6.96894e-5	0.0928041	0.00134514
chrX	92114086	92114180	19142682	0	-	0.510638	(0.49,0.53]	chrX	1627984	10	EXON_PSEUDO	EXON_PSEUDO	EIF4A1P10	ENSG00000229132.2	ENST00000428832.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	8	34	2	1.79587	2.104755	2.41364	0.0123341	0.0112538	0.0705839	0.0665375
chr11	32933638	32933738	11899063	0	+	0.41	(0.39,0.42]	chr11	909001	20	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	22	2	1.99911	2.1047000000000002	2.21029	0.0477207	0.0100911	0.17993	0.0625052
chr12	120699992	120700091	13117506	0	+	0.393939	(0.39,0.42]	chr12	1024005	36	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	28	2	1.93908	2.1046	2.27012	0.0154765	0.00945558	0.0836906	0.0594007
chr9	112222365	112222464	10802906	0	-	0.383838	(0.36,0.39]	chr9	818409	48	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6	protein_coding	protein_coding	protein_coding	protein_coding	22	77	2	1.6508	2.104595	2.55839	0.00700056	6.02946e-5	0.0476482	0.00120805
chr10	46006403	46006497	11470928	0	-	0.329787	(0.29,0.33]	chr10	874825	15	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5:ENST00000580070.5:ENST00000578454.5:ENST00000579039.2	protein_coding	protein_coding	protein_coding	protein_coding	18	57	2	1.99385	2.10438	2.21491	0.00637284	3.46562e-4	0.0448323	0.00487164
chr20	2463746	2463822	17878953	0	-	0.684211	(0.59,1]	chr20	1512829	1	CDS	CDS:UTR3:EXON_MRNA	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	82	2	2.08709	2.1042300000000003	2.12137	0.00890645	0.00514111	0.0565003	0.0393276
chr3	100364690	100364787	4325496	0	-	0.28866000000000003	[0,0.29]	chr3	360552	14	UTR3	UTR3:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	2.0001	2.104055	2.20801	0.0227161	0.00342283	0.107633	0.0283456
chr7	158658337	158658408	9158781	0	-	0.507042	(0.49,0.53]	chr7	699556	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000441982.5:ENST00000467785.5:ENST00000409339.3:ENST00000474940.5:ENST00000475918.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	1.9035	2.1039499999999998	2.3044	0.0509448	0.0295204	0.181793	0.129773
chr19	18569009	18569103	17258787	0	+	0.574468	(0.53,0.59]	chr19	1425532	5	UTR3	UTR3:EXON_MRNA	KXD1	ENSG00000105700.11	ENST00000539106.5:ENST00000540691.5:ENST00000222307.9:ENST00000601630.5:ENST00000595073.5:ENST00000600654.5:ENST00000602094.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	38	2	1.70379	2.103895	2.504	0.0330081	0.00279409	0.138711	0.0241702
chr17	28598549	28598635	16486209	0	-	0.546512	(0.53,0.59]	chr17	1347864	2	CDS	CDS:EXON_MRNA:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000531839.5:ENST00000578479.1:ENST00000580567.6:ENST00000536674.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	38	2	2.0693	2.103795	2.13829	0.0160468	0.00663709	0.0860154	0.046176300000000003
chr14	102039082	102039168	14495777	0	+	0.523256	(0.49,0.53]	chr14	1133220	1	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000555800.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	25	2	1.99044	2.10373	2.21702	0.0435903	0.00959574	0.170594	0.0603269
chr19	1032558	1032653	17190784	0	+	0.526316	(0.49,0.53]	chr19	1411386	1	CDS	CDS:EXON_MRNA:INTRON	CNN2	ENSG00000064666.15	ENST00000562015.5:ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6:ENST00000566695.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.99044	2.10373	2.21702	0.0435903	0.00959574	0.170594	0.0603269
chr17	66804825	66804924	16326766	0	+	0.464646	(0.455,0.49]	chr17	1324591	9	UTR3	UTR3:EXON_MRNA	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	10	42	2	1.95018	2.103425	2.25667	0.0063042	0.00445666	0.044701	0.0346553
chr21	8209601	8209700	18041113	0	+	0.535354	(0.53,0.59]	chr21	1530812	3	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	1245	5919	2	1.7423	2.10333	2.46436	1.55653e-4	3.88135e-7	0.00281683	1.77591e-5
chr17	38920174	38920274	16218426	0	+	0.56	(0.53,0.59]	chr17	1310821	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	5	25	2	1.69162	2.10331	2.515	0.0342431	0.0292633	0.141233	0.129773
chr1	145993189	145993283	1270243	0	-	0.382979	(0.36,0.39]	chr1	125527	9	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	27	90	2	1.82631	2.10324	2.38017	9.58365e-4	5.99934e-4	0.0107296	0.00811676
chr7	5605374	5605474	8112121	0	+	0.69	(0.59,1]	chr7	620040	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	106	2	1.37159	2.10309	2.83459	0.0538397	1.52422e-4	0.198494	0.00254205
chr1	150556229	150556297	468474	0	+	0.588235	(0.53,0.59]	chr1	47466	2	CDS	CDS:EXON_MRNA	ADAMTSL4	ENSG00000143382.16	ENST00000369039.9:ENST00000271643.9:ENST00000369041.9:ENST00000674043.1:ENST00000674058.1:ENST00000369038.6	protein_coding	protein_coding	protein_coding	protein_coding	10	54	2	1.4107	2.10304	2.79538	0.046906	2.47731e-4	0.179138	0.00374232
chr20	44906537	44906637	17799152	0	+	0.4	(0.39,0.42]	chr20	1504696	2	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	2.02403	2.10279	2.18155	0.0283931	0.0111868	0.127654	0.0665375
chr2	47799685	47799785	1788198	0	+	0.38	(0.36,0.39]	chr2	172666	8	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	30	2	1.94692	2.10243	2.25794	0.0192083	0.00429221	0.0943643	0.0333617
chr12	14786766	14786865	13220958	0	-	0.464646	(0.455,0.49]	chr12	1036698	23	UTR3	UTR3:EXON_MRNA	WBP11	ENSG00000084463.8	ENST00000261167.7	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	2.07467	2.102305	2.12994	0.0304832	0.00905778	0.130204	0.0574177
chr7	128858616	128858710	8522572	0	+	0.638298	(0.59,1]	chr7	650485	2	UTR3	UTR3:EXON_MRNA	FLNC	ENSG00000128591.16	ENST00000325888.13:ENST00000346177.6	protein_coding	protein_coding	protein_coding	protein_coding	3	29	2	1.88006	2.102305	2.32455	0.0554008	0.0520547	0.193787	0.191173
chr12	6570544	6570637	13187061	0	-	0.548387	(0.53,0.59]	chr12	1032249	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000646322.1:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000647112.1:ENST00000642810.1:ENST00000642637.1:ENST00000642686.1:ENST00000645143.1:ENST00000647394.1:ENST00000643335.1:ENST00000643815.1:ENST00000647535.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000646462.1:ENST00000644652.1:ENST00000645645.1:ENST00000642594.1:ENST00000646360.1:ENST00000646268.1:ENST00000645095.1:ENST00000644352.1:ENST00000645991.1:ENST00000642860.1:ENST00000647483.1:ENST00000535717.2:ENST00000646608.1:ENST00000644077.1:ENST00000643538.1:ENST00000645005.1:ENST00000645199.1:ENST00000642893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	48	2	2.01641	2.1018850000000002	2.18736	0.0108917	0.00311033	0.0645168	0.0263966
chr9	125241296	125241382	10856280	0	-	0.581395	(0.53,0.59]	chr9	822397	3	UTR5	UTR5:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	63	2	1.625	2.101835	2.57867	0.00829067	0.00198261	0.0536029	0.0195088
chr10	80155852	80155912	11593201	0	-	0.483333	(0.455,0.49]	chr10	883016	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000265447.8:ENST00000463340.1:ENST00000447489.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	19	2	1.96875	2.10177	2.23479	0.0480352	0.0209335	0.180552	0.101282
chr20	31771620	31771682	17749681	0	+	0.483871	(0.455,0.49]	chr20	1498021	2	CDS	CDS:EXON_MRNA	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.96875	2.10177	2.23479	0.0480352	0.0209335	0.180552	0.101282
chr1	40237771	40237870	152769	0	+	0.373737	(0.36,0.39]	chr1	19091	21	CDS	CDS:EXON_MRNA	RLF	ENSG00000117000.9	ENST00000372771.5	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	2.05966	2.10168	2.1437	0.0366015	0.0340515	0.145024	0.141465
chr10	131956260	131956360	11323471	0	+	0.38	(0.36,0.39]	chr10	863121	4	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	16	2	2.05966	2.10168	2.1437	0.0366015	0.0340515	0.145024	0.141465
chr11	57816700	57816798	11953243	0	+	0.377551	(0.36,0.39]	chr11	914890	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	2.05966	2.10168	2.1437	0.0366015	0.0340515	0.145024	0.141465
chr17	82083516	82083577	16710724	0	-	0.557377	(0.53,0.59]	chr17	1378170	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	12	61	2	1.2908	2.1015550000000003	2.91231	0.0483974	1.23177e-4	0.181897	0.00213941
chr5	135334485	135334583	6847169	0	-	0.346939	(0.33,0.36]	chr5	523982	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MACROH2A1	ENSG00000113648.16	ENST00000511689.5:ENST00000512507.5:ENST00000451949.6:ENST00000304332.8:ENST00000312469.8:ENST00000360597.8:ENST00000511494.5:ENST00000506671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	25	2	1.65713	2.101255	2.54538	0.0528205	0.00259294	0.195536	0.0229695
chr4	165342882	165342976	5206966	0	+	0.223404	[0,0.29]	chr4	420285	11	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	8	22	2	1.88543	2.1012	2.31697	0.0226603	0.00756459	0.10742	0.0499309
chr21	31659769	31659841	18093397	0	+	0.611111	(0.59,1]	chr21	1533871	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SOD1	ENSG00000142168.15	ENST00000389995.4:ENST00000270142.11:ENST00000476106.5:ENST00000470944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	65	2	1.61912	2.100905	2.58269	0.0241476	0.0067313	0.110851	0.0461258
chr5	79612523	79612615	6052853	0	+	0.576087	(0.53,0.59]	chr5	474909	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TENT2	ENSG00000164329.14	ENST00000505571.5:ENST00000423041.6:ENST00000504233.5:ENST00000453514.6:ENST00000428308.6:ENST00000515807.5:ENST00000502269.1:ENST00000296783.7:ENST00000514095.5:ENST00000508620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	33	2	1.96733	2.100695	2.23406	0.022694	0.00870728	0.105117	0.0558165
chr1	155290177	155290275	1307532	0	-	0.540816	(0.53,0.59]	chr1	132189	10	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	10	45	2	1.55616	2.100455	2.64475	0.018611	0.00453071	0.0952021	0.0351187
chr19	38729710	38729802	17323766	0	+	0.597826	(0.59,1]	chr19	1434384	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000589528.1:ENST00000497637.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	56	2	1.90752	2.100355	2.29319	0.0282297	0.00750123	0.127287	0.0495953
chr17	16441646	16441739	16142093	0	+	0.473118	(0.455,0.49]	chr17	1300762	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000658116.1:ENST00000475953.5:ENST00000470491.6:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	120	505	2	1.63363	2.10027	2.56691	7.02183e-4	3.70802e-7	0.00885939	1.71165e-5
chr12	50932215	50932313	12875853	0	+	0.306122	(0.29,0.33]	chr12	1000530	22	UTR3	UTR3:EXON_MRNA	METTL7A	ENSG00000185432.12	ENST00000548553.1:ENST00000547104.1:ENST00000332160.5:ENST00000550097.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	16	2	1.74619	2.0999600000000003	2.45373	0.0509174	0.0156405	0.181793	0.084273700000000007
chr12	68841547	68841647	12941204	0	+	0.33	(0.29,0.33]	chr12	1008678	18	UTR3	UTR3:EXON_MRNA	MDM2	ENSG00000135679.26	ENST00000258149.11	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.74619	2.0999600000000003	2.45373	0.0509174	0.0156405	0.181793	0.084273700000000007
chr2	55573697	55573777	2670158	0	-	0.325	(0.29,0.33]	chr2	238979	2	CDS	CDS:EXON_MRNA:INTRON	PPP4R3B	ENSG00000275052.5	ENST00000616407.2:ENST00000611717.4:ENST00000616288.4:ENST00000482826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	16	2	1.74619	2.0999600000000003	2.45373	0.0509174	0.0156405	0.181793	0.084273700000000007
chr2	108783732	108783801	1983158	0	+	0.318841	(0.29,0.33]	chr2	188360	3	CDS	CDS:EXON_MRNA	RANBP2	ENSG00000153201.16	ENST00000283195.11	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.74619	2.0999600000000003	2.45373	0.0509174	0.0156405	0.181793	0.084273700000000007
chr22	29300161	29300252	18336738	0	+	0.296703	(0.29,0.33]	chr22	1558224	1	UTR3	UTR3:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3:ENST00000610553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	16	2	1.74619	2.0999600000000003	2.45373	0.0509174	0.0156405	0.181793	0.084273700000000007
chr9	125363836	125363935	10461776	0	+	0.30303	(0.29,0.33]	chr9	788162	12	UTR3	UTR3:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000297933.11:ENST00000470056.5:ENST00000394104.6	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.74619	2.0999600000000003	2.45373	0.0509174	0.0156405	0.181793	0.084273700000000007
chr6	33406292	33406389	7121900	0	+	0.659794	(0.59,1]	chr6	547585	2	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000494554.2	protein_coding	protein_coding	protein_coding	protein_coding	10	84	2	1.36903	2.09971	2.83039	0.0450142	8.24076e-4	0.167113	0.0102141
chr1	151399587	151399687	471566	0	+	0.61	(0.59,1]	chr1	48183	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB4	ENSG00000159377.11	ENST00000495288.5:ENST00000290541.7:ENST00000495805.5:ENST00000476467.1:ENST00000493673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	152	2	1.87158	2.09964	2.3277	0.00606863	4.96872e-4	0.0438273	0.00648546
chr3	194448456	194448546	4654950	0	-	0.388889	(0.36,0.39]	chr3	384463	1	CDS	CDS:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	22	2	1.81362	2.09963	2.38564	0.0476159	0.016627	0.17993	0.0880236
chr16	74302211	74302292	15739389	0	+	0.469136	(0.455,0.49]	chr16	1253992	1	CDS	CDS:UTR3:EXON_MRNA	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000568615.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	31	2	2.04847	2.099555	2.15064	0.0192065	0.00661084	0.0943643	0.046082
chr1	25903640	25903726	905304	0	-	0.44186	(0.42,0.455]	chr1	94153	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000485226.1:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	40	157	2	2.01366	2.0995549999999996	2.18545	2.85269e-4	8.21068e-5	0.00420186	0.00170239
chr1	19150648	19150720	876428	0	-	0.527778	(0.49,0.53]	chr1	90180	2	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	1.7294	2.0994900000000003	2.46958	0.0216372	0.00344146	0.103121	0.0292838
chr4	176329113	176329210	5242232	0	+	0.28866000000000003	[0,0.29]	chr4	421869	9	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	10	27	2	1.68915	2.09947	2.50979	0.016113100000000002	0.00608277	0.0866586	0.0438976
chr12	54292836	54292927	13343348	0	-	0.648352	(0.59,1]	chr12	1049646	5	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	11	95	2	1.74761	2.099435	2.45126	0.011962800000000001	0.00209267	0.0700164	0.0204266
chr1	228457717	228457817	1539745	0	-	0.72	(0.59,1]	chr1	154186	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AW	ENSG00000181218.5	ENST00000366695.3	protein_coding	protein_coding	protein_coding	protein_coding	8	76	2	1.93269	2.0989750000000003	2.26526	0.0257004	0.00279128	0.116399	0.0249347
chr2	86777252	86777351	1928628	0	+	0.434343	(0.42,0.455]	chr2	181779	40	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.87159	2.0989400000000002	2.32629	0.0214479	0.0153564	0.102998	0.0832114
chr15	68214289	68214388	15357857	0	-	0.525253	(0.49,0.53]	chr15	1212968	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-315D16.2:CLN6	ENSG00000260007.3:ENSG00000128973.13	ENST00000637888.1:ENST00000562767.2:ENST00000637054.1:ENST00000646164.1:ENST00000249806.11:ENST00000638076.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5:ENST00000538696.5:ENST00000635747.1:ENST00000637494.1:ENST00000638144.1:ENST00000636212.1:ENST00000637823.1:ENST00000637450.1:ENST00000637667.1:ENST00000564752.1:ENST00000563917.2:ENST00000636314.1:ENST00000637223.1:ENST00000564846.1:ENST00000636020.1:ENST00000635754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	1.81659	2.09878	2.38097	0.0425419	0.0376859	0.167547	0.147713
chr5	150446801	150446882	6914293	0	-	0.592593	(0.59,1]	chr5	529165	1	CDS	CDS:EXON_MRNA	RPS14	ENSG00000164587.13	ENST00000407193.7:ENST00000401695.8:ENST00000521466.5:ENST00000519690.1:ENST00000312037.6:ENST00000518139.5:ENST00000642507.1:ENST00000519855.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	197	2	1.90155	2.09873	2.29591	0.00437317	2.70666e-4	0.0340502	0.00403739
chr15	64684476	64684575	14978118	0	+	0.40404	(0.39,0.42]	chr15	1177327	29	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	2.01677	2.09851	2.18025	0.0235818	0.00587938	0.111323	0.0424857
chr1	51788075	51788170	191697	0	+	0.389474	(0.36,0.39]	chr1	24578	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	164	2	1.78273	2.09827	2.41381	6.27749e-4	1.51048e-5	0.00780619	4.24114e-4
chr17	81511985	81512069	16707883	0	-	0.547619	(0.53,0.59]	chr17	1377341	2	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	214	2	1.87148	2.09824	2.325	5.94895e-4	3.44462e-5	0.00805455	7.57659e-4
chr19	10295612	10295712	17224750	0	+	0.73	(0.59,1]	chr19	1418563	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ICAM5	ENSG00000105376.5	ENST00000221980.5:ENST00000586480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	73	2	1.91973	2.0980600000000003	2.27639	0.0167506	0.00420132	0.0883702	0.0328662
chr2	152718924	152719024	2139104	0	+	0.59	(0.53,0.59]	chr2	198120	3	CDS	CDS:EXON_MRNA:INTRON	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10:ENST00000455875.5:ENST00000425034.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	38	2	1.48274	2.09796	2.71318	0.0371726	0.00340745	0.151929	0.0283456
chr10	1005817	1005907	10898750	0	+	0.377778	(0.36,0.39]	chr10	829352	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1:ENST00000491261.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	32	2	1.66836	2.09791	2.52746	0.0474647	0.00115604	0.17993	0.0125677
chr2	151463079	151463177	2134807	0	+	0.44898	(0.42,0.455]	chr2	197836	3	CDS	CDS:EXON_MRNA	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000444746.7:ENST00000243326.9:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding	9	39	2	1.68865	2.0978950000000003	2.50714	0.0276098	0.00122903	0.124664	0.0130835
chr22	20064854	20064950	18297039	0	+	0.520833	(0.49,0.53]	chr22	1553104	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TANGO2	ENSG00000183597.16	ENST00000401886.5:ENST00000420290.6:ENST00000432883.5:ENST00000434570.6:ENST00000447208.6:ENST00000456048.5:ENST00000398042.6:ENST00000399807.7:ENST00000450019.5:ENST00000327374.9:ENST00000401833.5:ENST00000444651.5:ENST00000490583.5:ENST00000476940.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	37	2	2.03065	2.097705	2.16476	0.0189484	0.00364507	0.0958835	0.0306714
chr7	73207094	73207188	8331593	0	+	0.382979	(0.36,0.39]	chr7	634360	11	EXON_LNCRNA	EXON_LNCRNA	GTF2IP4	ENSG00000233369.7	ENST00000544802.5	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	19	2	1.85874	2.0973699999999997	2.336	0.0415243	0.0154226	0.164804	0.0834369
chr18	36167167	36167222	16825278	0	+	0.436364	(0.42,0.455]	chr18	1387653	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540766.5:ENST00000545302.5:ENST00000541748.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	33	2	1.67452	2.0972	2.51988	0.0264395	0.00300574	0.117445	0.0267032
chr5	126810264	126810350	6202576	0	+	0.511628	(0.49,0.53]	chr5	483181	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000395354.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	24	2	1.69633	2.09715	2.49797	0.0531914	0.00843736	0.184818	0.0546021
chr11	62566873	62566941	12409081	0	-	0.632353	(0.59,1]	chr11	960952	2	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	EEF1G:RP11-864I4.1:MIR6747	ENSG00000254772.10:ENSG00000255508.7:ENSG00000276102.1	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000617193.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	9	81	2	1.86673	2.0971349999999997	2.32754	0.0133561	0.0035583	0.0743429	0.0300503
chr2	135916298	135916372	2898411	0	-	0.364865	(0.36,0.39]	chr2	258609	2	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000422708.3	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	2.02118	2.0971200000000003	2.17306	0.0251625	0.00224077	0.117055	0.0207282
chr6	28156194	28156293	7105813	0	+	0.373737	(0.36,0.39]	chr6	543601	23	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	2.02118	2.0971200000000003	2.17306	0.0251625	0.00224077	0.117055	0.0207282
chr1	154582374	154582471	1303540	0	-	0.453608	(0.42,0.455]	chr1	131361	8	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	31	2	1.63927	2.097005	2.55474	0.0455517	0.00228741	0.175554	0.0210026
chr7	25125171	25125260	8730835	0	-	0.640449	(0.59,1]	chr7	666464	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYCS	ENSG00000172115.9	ENST00000305786.7:ENST00000409409.5:ENST00000409764.5:ENST00000413447.1	protein_coding	protein_coding	protein_coding	protein_coding	7	64	2	1.77181	2.0969	2.42199	0.0267363	0.00475078	0.118611	0.0367332
chr5	75342705	75342770	6036963	0	+	0.338462	(0.33,0.36]	chr5	473589	1	CDS	CDS:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000509431.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	22	2	1.82394	2.09689	2.36984	0.0494504	0.00564505	0.18557	0.041184
chr18	21867260	21867360	16779521	0	+	0.39	(0.36,0.39]	chr18	1384234	27	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.89391	2.096825	2.29974	0.0121625	0.00926291	0.0701019	0.0586162
chr1	45602309	45602365	175008	0	+	0.482143	(0.455,0.49]	chr1	22711	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	43	2	1.88914	2.09665	2.30416	0.0127583	0.00182199	0.0719798	0.0176039
chr17	41718153	41718206	16226904	0	+	0.54717	(0.53,0.59]	chr17	1312521	1	EXON_SMALL	EXON_SMALL	RNA5SP442	ENSG00000201920.1	ENST00000365050.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	113	526	2	1.50525	2.096565	2.68788	0.00165067	4.04422e-7	0.0163614	2.05866e-5
chr1	36286367	36286457	141536	0	+	0.433333	(0.42,0.455]	chr1	17556	1	CDS	CDS:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.83064	2.096555	2.36247	0.0462889	0.0149305	0.176878	0.081162
chr8	47799299	47799390	9815740	0	-	0.648352	(0.59,1]	chr8	742529	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.42148	2.096285	2.77109	0.0566164	0.00331425	0.194397	0.0285314
chr7	157182254	157182328	8635872	0	+	0.391892	(0.39,0.42]	chr7	659674	3	CDS	CDS:EXON_MRNA	UBE3C	ENSG00000009335.18	ENST00000611269.4:ENST00000348165.10:ENST00000389103.4	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.84882	2.096155	2.34349	0.0214409	0.0169272	0.102904	0.0890655
chrX	119243533	119243626	18840474	0	+	0.365591	(0.36,0.39]	chrX	1605479	4	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	1.66365	2.095555	2.52746	0.0345996	0.00115604	0.143631	0.0125677
chr20	36047777	36047875	17956019	0	-	0.387755	(0.36,0.39]	chr20	1521358	23	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	7	26	2	1.81435	2.095545	2.37674	0.0302191	0.00529284	0.129773	0.0390084
chr5	113020215	113020314	6153961	0	+	0.242424	[0,0.29]	chr5	480731	69	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	9	28	2	2.03545	2.0951649999999997	2.15488	0.0436536	0.00339809	0.170594	0.0283451
chr1	47217955	47218053	985529	0	-	0.469388	(0.455,0.49]	chr1	104046	18	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	1.85716	2.09497	2.33278	0.0068983	0.00314029	0.0473262	0.0276877
chr1	225919972	225920068	1531280	0	-	0.385417	(0.36,0.39]	chr1	153169	2	UTR3	UTR3:EXON_MRNA:INTRON	RP4-559A3.7:PYCR2	ENSG00000255835.1:ENSG00000143811.19	ENST00000432920.2:ENST00000612039.4:ENST00000612651.4:ENST00000478402.5:ENST00000343818.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	45	2	1.76426	2.093455	2.42265	0.0178361	5.72524e-4	0.0918323	0.00726471
chr7	103300215	103300307	8441001	0	+	0.423913	(0.42,0.455]	chr7	645005	1	CDS	CDS:UTR3:EXON_MRNA	PMPCB	ENSG00000105819.14	ENST00000249269.9:ENST00000428154.5:ENST00000456433.5:ENST00000443722.5:ENST00000444457.5:ENST00000498530.5:ENST00000453466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	2.03532	2.0933450000000002	2.15137	0.040947	0.0123864	0.163285	0.07101
chr1	112654464	112654533	411311	0	+	0.362319	(0.36,0.39]	chr1	40512	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPZA1	ENSG00000116489.13	ENST00000476936.5:ENST00000263168.4:ENST00000498626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	84	2	1.73671	2.093295	2.44988	0.011685	3.83755e-5	0.0686664	8.31739e-4
chr15	90266040	90266122	15098913	0	+	0.439024	(0.42,0.455]	chr15	1187922	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-697E2.6:NGRN	ENSG00000261147.1:ENSG00000182768.9	ENST00000561573.1:ENST00000331497.3:ENST00000379095.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	35	2	1.71256	2.093175	2.47379	0.012801	0.00996858	0.0725185	0.0621728
chr5	36876008	36876107	6538384	0	-	0.494949	(0.49,0.53]	chr5	506204	48	EXON_LNCRNA	EXON_LNCRNA	NIPBL-DT	ENSG00000285967.1	ENST00000647750.1:ENST00000649921.1:ENST00000647824.1	lncRNA	lncRNA	lncRNA	lncRNA	4	20	2	2.05119	2.0930999999999997	2.13501	0.0360743	0.0287874	0.145024	0.128869
chr18	8918539	8918636	16750744	0	+	0.484536	(0.455,0.49]	chr18	1381318	19	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	14	57	2	1.83149	2.093065	2.35464	0.00589014	8.71378e-4	0.0425608	0.0106963
chr4	75806485	75806572	4893077	0	+	0.367816	(0.36,0.39]	chr4	403089	1	CDS	CDS:EXON_MRNA	USO1	ENSG00000138768.15	ENST00000514213.7:ENST00000264904.8:ENST00000508454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	27	2	2.04221	2.092955	2.1437	0.0340515	0.00653435	0.141465	0.0456317
chrX	124101871	124101969	18852598	0	+	0.336735	(0.33,0.36]	chrX	1606330	14	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	78	2	2.07183	2.09292	2.11401	0.00373558	2.39158e-4	0.0312668	0.00362206
chr7	92613750	92613849	8924977	0	-	0.353535	(0.33,0.36]	chr7	681136	90	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	14	44	2	1.76184	2.09266	2.42348	0.00863184	8.85644e-4	0.0556009	0.0107927
chr19	16551313	16551412	17491570	0	-	0.484848	(0.455,0.49]	chr19	1466498	16	UTR3	UTR3:EXON_MRNA:INTRON	CTD-3222D19.2:SLC35E1	ENSG00000141979.4:ENSG00000127526.15	ENST00000409035.1:ENST00000593812.1:ENST00000595753.6:ENST00000652421.1:ENST00000409648.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	26	2	1.90955	2.092235	2.27492	0.0193827	0.0171034	0.0943643	0.0903636
chr22	16806744	16806843	18421144	0	-	0.212121	[0,0.29]	chr22	1569146	64	INTRON	INTRON	XKR3	ENSG00000172967.8	ENST00000331428.5:ENST00000684488.1	protein_coding	protein_coding	protein_coding	protein_coding	12	32	2	1.63724	2.0921	2.54696	0.0255145	6.71148e-4	0.115596	0.00871633
chr6	17615227	17615323	7618871	0	-	0.25	[0,0.29]	chr6	580511	3	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	12	32	2	1.63724	2.0921	2.54696	0.0255145	6.71148e-4	0.115596	0.00871633
chr1	19153767	19153853	876466	0	-	0.453488	(0.42,0.455]	chr1	90198	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1:ENST00000497018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	25	2	1.58956	2.09209	2.59462	0.0485703	0.0062772	0.175495	0.0445415
chr5	139321963	139322029	6249020	0	+	0.424242	(0.42,0.455]	chr5	487000	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5:ENST00000502944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	40	2	1.99701	2.09197	2.18693	0.0235036	0.00200137	0.111072	0.0189555
chr8	11844829	11844927	9699204	0	-	0.653061	(0.59,1]	chr8	734804	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000420692.7:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000532409.6:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	64	2	2.03921	2.09192	2.14463	0.0371471	0.00445434	0.151849	0.0340903
chr1	226071479	226071569	738418	0	+	0.288889	[0,0.29]	chr1	74476	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H3-3A	ENSG00000163041.13	ENST00000366816.5:ENST00000366815.10:ENST00000655399.1:ENST00000667897.1:ENST00000656829.1:ENST00000666609.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	87	2	1.92037	2.091745	2.26312	0.00127394	1.03668e-4	0.0139534	0.00185848
chr11	77625716	77625793	12473610	0	-	0.363636	(0.36,0.39]	chr11	970324	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000532069.5:ENST00000528364.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	35	2	1.80227	2.091695	2.38112	0.0123074	0.0031815	0.070688	0.0279343
chr8	102863999	102864096	9984798	0	-	0.556701	(0.53,0.59]	chr8	753514	3	UTR5	UTR5:EXON_MRNA:INTRON	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	72	2	1.93933	2.0916449999999998	2.24396	0.00455262	9.56314e-4	0.0352819	0.010724
chr16	2771357	2771412	15494999	0	+	0.327273	(0.29,0.33]	chr16	1227825	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1:ENST00000573583.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	23	2	1.99415	2.09164	2.18913	0.0333928	0.00629431	0.140128	0.044701
chr5	134924470	134924557	6232562	0	+	0.448276	(0.42,0.455]	chr5	485526	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	PCBD2:MTND6P4	ENSG00000132570.15:ENSG00000249119.1	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1:ENST00000506002.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_transcript:processed_pseudogene	26	103	2	1.65466	2.091535	2.52841	0.0048139	2.80722e-5	0.0365653	7.09784e-4
chr12	56601327	56601402	13351709	0	-	0.56	(0.53,0.59]	chr12	1051622	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5:ENST00000553222.1:ENST00000547453.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	28	2	2.0289	2.0914650000000004	2.15403	0.0373899	0.0118065	0.146698	0.0686664
chr1	39576323	39576417	953095	0	-	0.553191	(0.53,0.59]	chr1	100599	5	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000451091.2:ENST00000531243.2	protein_coding	protein_coding	protein_coding	protein_coding	16	79	2	1.69635	2.091465	2.48658	0.00701835	3.78696e-4	0.0477662	0.00525548
chr9	34086582	34086680	10634746	0	-	0.285714	[0,0.29]	chr9	803967	3	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	7	20	2	1.7788	2.091375	2.40395	0.0210081	0.0208453	0.101116	0.100997
chrX	48267247	48267345	18691160	0	+	0.489796	(0.455,0.49]	chrX	1593888	5	UTR3	UTR3:EXON_MRNA	SSX1	ENSG00000126752.8	ENST00000376919.4	protein_coding	protein_coding	protein_coding	protein_coding	11	46	2	1.87851	2.091335	2.30416	0.0092042	0.00182199	0.0583232	0.0176039
chr16	70778211	70778310	16000144	0	-	0.575758	(0.53,0.59]	chr16	1285066	57	INTRON	INTRON	VAC14	ENSG00000103043.15	ENST00000261776.10:ENST00000568886.5:ENST00000568548.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	95	2	1.98414	2.09126	2.19838	0.0013163	8.59983e-4	0.0143707	0.0100335
chr6	67887856	67887955	7784139	0	-	0.383838	(0.36,0.39]	chr6	596229	10	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	57	186	2	2.0859	2.0912300000000004	2.09656	1.03439e-4	6.06471e-5	0.00185495	0.00131816
chr6	30649557	30649655	7111995	0	+	0.571429	(0.53,0.59]	chr6	545007	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	C6orf136	ENSG00000204564.12	ENST00000293604.10:ENST00000484551.1:ENST00000488383.5:ENST00000376473.9:ENST00000463794.1:ENST00000651131.1:ENST00000376471.8:ENST00000493705.1:ENST00000446773.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	28	2	2.0404	2.0912249999999997	2.14205	0.0362529	0.0123179	0.148525	0.070688
chr8	47976975	47977074	9316303	0	+	0.585859	(0.53,0.59]	chr8	713600	3	UTR3	UTR3:EXON_MRNA	MCM4	ENSG00000104738.18	ENST00000649838.1:ENST00000648407.1:ENST00000649919.1:ENST00000262105.6:ENST00000649973.1:ENST00000648519.1:ENST00000647877.1:ENST00000520637.2:ENST00000521151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	83	2	1.80779	2.090905	2.37402	0.00230837	0.00213673	0.0211205	0.0207294
chr19	13154336	13154432	17239962	0	+	0.625	(0.59,1]	chr19	1421276	6	UTR3	UTR3:EXON_MRNA	IER2	ENSG00000160888.7	ENST00000292433.4:ENST00000588173.1	protein_coding	protein_coding	protein_coding	protein_coding	13	115	2	2.07899	2.0909	2.10281	0.00363317	0.00313252	0.0298137	0.0276285
chr11	46795684	46795776	12384038	0	-	0.402174	(0.39,0.42]	chr11	956154	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	2.03239	2.090695	2.149	0.0149155	0.00663814	0.0812412	0.046176300000000003
chr14	102038459	102038532	14495767	0	+	0.575342	(0.53,0.59]	chr14	1133212	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000647366.1:ENST00000645697.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000644794.1:ENST00000555800.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	33	2	1.88327	2.09058	2.29789	0.0298124	0.00674768	0.129773	0.0468196
chr11	46751186	46751255	12383555	0	-	0.536232	(0.53,0.59]	chr11	956003	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	42	2	2.0271	2.090565	2.15403	0.0118065	0.00643061	0.0686664	0.0450905
chr2	177538788	177538887	2230156	0	+	0.313131	(0.29,0.33]	chr2	203559	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000681752.1:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681891.1:ENST00000681028.1:ENST00000680028.1:ENST00000679994.1:ENST00000680390.1:ENST00000681300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	22	2	2.00201	2.09028	2.17855	0.0183673	0.0134564	0.0928041	0.0744942
chr11	119093371	119093460	12162030	0	+	0.573034	(0.53,0.59]	chr11	937747	2	UTR3	UTR3:EXON_MRNA	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000640813.1:ENST00000544387.5:ENST00000543090.5:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648374.1:ENST00000539045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	1.61377	2.09021	2.56665	0.0436338	0.00209536	0.170594	0.0196588
chr17	7513926	7514002	16105317	0	+	0.5	(0.49,0.53]	chr17	1296799	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	43	2	1.9138	2.090105	2.26641	0.0190546	0.00391693	0.093872	0.0314356
chr2	99361339	99361435	1953820	0	+	0.364583	(0.36,0.39]	chr2	185506	3	CDS	CDS:EXON_MRNA	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	8	28	2	1.79387	2.0897550000000003	2.38564	0.0476159	0.00943902	0.17993	0.059408999999999997
chrX	154348601	154348679	19277945	0	-	0.589744	(0.53,0.59]	chrX	1638233	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	61	2	1.83524	2.08961	2.34398	0.00732584	0.00143671	0.0491463	0.0154399
chr7	74194808	74194878	8334055	0	+	0.571429	(0.53,0.59]	chr7	634965	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000678341.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	72	2	1.61684	2.08946	2.56208	0.0233353	1.4409e-4	0.110406	0.00242438
chr2	158658222	158658314	2158130	0	+	0.358696	(0.33,0.36]	chr2	198849	2	CDS	CDS:UTR3:EXON_MRNA	PKP4	ENSG00000144283.22	ENST00000389759.8:ENST00000426248.7:ENST00000628904.2:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000492496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	22	2	2.07736	2.089445	2.10153	0.0442037	0.00871844	0.172163	0.0560911
chr22	15755946	15756046	18284301	0	+	0.32	(0.29,0.33]	chr22	1551478	11	INTRON	INTRON	PSLNR	ENSG00000225255.6	ENST00000453395.5	lncRNA	lncRNA	lncRNA	lncRNA	202	543	2	1.66584	2.089285	2.51273	3.43052e-4	1.97542e-7	0.00483423	1.1252e-5
chr9	125241211	125241296	10856279	0	-	0.670588	(0.59,1]	chr9	822397	2	UTR5	UTR5:EXON_MRNA	HSPA5	ENSG00000044574.9	ENST00000324460.7:ENST00000680257.1:ENST00000679355.1:ENST00000681045.1:ENST00000681424.1:ENST00000681675.1:ENST00000681544.1:ENST00000680272.1:ENST00000679475.1:ENST00000680494.1:ENST00000681774.1:ENST00000680640.1:ENST00000680032.1:ENST00000681540.1:ENST00000680234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	179	2	1.97869	2.08915	2.19961	0.00151282	0.00135987	0.0153505	0.0147064
chr1	39572466	39572566	953052	0	-	0.44	(0.42,0.455]	chr1	100589	1	CDS_START	CDS_START:CDS:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000421687.6:ENST00000677644.1:ENST00000451091.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	45	2	1.93075	2.089025	2.2473	0.0048704	0.0048106	0.0371037	0.0366486
chr18	35140950	35141047	16822723	0	+	0.402062	(0.39,0.42]	chr18	1387343	7	UTR3	UTR3:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.79377	2.08845	2.38313	0.0299302	0.0128066	0.129773	0.0725185
chr22	20143028	20143119	18297690	0	+	0.681319	(0.59,1]	chr22	1553267	4	CDS	CDS:EXON_MRNA	ZDHHC8	ENSG00000099904.16	ENST00000334554.12:ENST00000405930.3:ENST00000320602.11	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.81066	2.088295	2.36593	0.0369806	0.0141097	0.145401	0.077233
chr5	75355055	75355134	6037104	0	+	0.481013	(0.455,0.49]	chr5	473638	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1:ENST00000515776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	36	2	1.92777	2.08821	2.24865	0.0286531	0.00240656	0.128685	0.0217576
chr11	119089989	119090067	12161981	0	+	0.487179	(0.455,0.49]	chr11	937715	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HMBS	ENSG00000256269.10	ENST00000652429.1:ENST00000545621.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000543821.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	30	2	2.08503	2.08813	2.09123	0.0158994	0.00905243	0.0856643	0.0574173
chr9	83661020	83661115	10710354	0	-	0.305263	(0.29,0.33]	chr9	810178	12	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	42	2	1.50395	2.087935	2.67192	0.0215782	2.43559e-4	0.103032	0.00399705
chr6	18225522	18225620	7622472	0	-	0.316327	(0.29,0.33]	chr6	580929	18	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5:ENST00000244776.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	35	2	1.84264	2.08768	2.33272	0.0081759	0.00296866	0.0532189	0.0264052
chr14	101856685	101856785	14494175	0	+	0.42	(0.39,0.42]	chr14	1132841	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000328724.9:ENST00000557268.5:ENST00000350249.7:ENST00000557621.5:ENST00000556307.5:ENST00000553730.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	39	2	1.60776	2.0876200000000003	2.56748	0.0291807	9.10614e-4	0.129773	0.0103521
chr19	1440348	1440362	17193294	0	+	0.642857	(0.59,1]	chr19	1412201	1	CDS	CDS:UTR3:EXON_MRNA	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	46	2	1.72824	2.0870550000000003	2.44587	0.0471232	0.0105307	0.179872	0.0644466
chr2	61537759	61537859	2690989	0	-	0.61	(0.59,1]	chr2	240464	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	36	309	2	2.05634	2.086945	2.11755	8.02341e-4	3.57168e-4	0.00997959	0.00500379
chr7	129005015	129005087	9060683	0	-	0.347222	(0.33,0.36]	chr7	691855	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.72403	2.086945	2.44986	0.0238301	0.00563343	0.109562	0.0422191
chr4	83461582	83461680	5500206	0	-	0.346939	(0.33,0.36]	chr4	440770	22	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	39	2	1.82394	2.08684	2.34974	0.0494504	5.6054e-4	0.18557	0.00711938
chr7	129832393	129832491	9061541	0	-	0.510204	(0.49,0.53]	chr7	691964	18	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.90685	2.08663	2.26641	0.0534351	0.0190546	0.184995	0.093872
chr19	6572955	6573006	17443064	0	-	0.392157	(0.39,0.42]	chr19	1457138	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199223.1	ENST00000362353.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	22	79	2	2.04976	2.086435	2.12311	9.79039e-4	6.77726e-4	0.0109484	0.00876307
chr1	180884361	180884460	586609	0	+	0.515152	(0.49,0.53]	chr1	60742	4	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.99044	2.0864149999999997	2.18239	0.0435903	0.024394	0.170594	0.111797
chr1	155289390	155289488	1307524	0	-	0.581633	(0.53,0.59]	chr1	132189	2	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6	protein_coding	protein_coding	protein_coding	protein_coding	4	21	2	1.65775	2.0863750000000003	2.515	0.0573191	0.0292633	0.196623	0.129773
chr5	91376694	91376768	6695385	0	-	0.554054	(0.53,0.59]	chr5	516170	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000514284.5:ENST00000508948.5:ENST00000503192.5:ENST00000507075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	21	2	1.65775	2.0863750000000003	2.515	0.0573191	0.0292633	0.196623	0.129773
chr5	139319333	139319417	6248992	0	+	0.428571	(0.42,0.455]	chr5	486993	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	29	2	1.83064	2.086275	2.34191	0.0159091	0.0149305	0.0854674	0.081162
chr1	26472612	26472627	109563	0	+	0.466667	(0.455,0.49]	chr1	13072	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000468388.5:ENST00000479815.5:ENST00000460563.5:ENST00000464888.5:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	1.8708	2.0860950000000003	2.30139	0.0530131	0.0324007	0.195536	0.134751
chr10	99397449	99397546	11657423	0	-	0.474227	(0.455,0.49]	chr10	888015	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000489349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	1.8708	2.0860950000000003	2.30139	0.0530131	0.0324007	0.195536	0.134751
chr11	60070527	60070625	11961717	0	+	0.336735	(0.33,0.36]	chr11	915694	4	UTR3	UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000395032.6:ENST00000358152.6:ENST00000278865.8:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	71	2	1.63696	2.085725	2.53449	0.0194161	3.5845e-5	0.0944741	7.84153e-4
chr16	9112091	9112190	15534252	0	+	0.353535	(0.33,0.36]	chr16	1230410	90	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C16orf72:RP11-473I1.9	ENSG00000182831.12:ENSG00000263244.2	ENST00000327827.12:ENST00000574285.2:ENST00000574616.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	20	2	1.69981	2.0857200000000002	2.47163	0.0370662	0.0129725	0.145667	0.0724783
chr2	170993286	170993384	3010656	0	-	0.346939	(0.33,0.36]	chr2	266766	26	UTR3	UTR3:EXON_MRNA	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	20	2	1.69981	2.0857200000000002	2.47163	0.0370662	0.0129725	0.145667	0.0724783
chrX	153696391	153696489	18915655	0	+	0.581633	(0.53,0.59]	chrX	1611204	13	UTR3	UTR3:EXON_MRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10	protein_coding	protein_coding	protein_coding	protein_coding	26	130	2	1.80779	2.085715	2.36364	0.00213673	9.96802e-5	0.0207294	0.00180162
chr2	74891811	74891908	1893437	0	+	0.350515	(0.33,0.36]	chr2	179646	10	UTR3	UTR3:EXON_MRNA	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	22	68	2	2.02236	2.085365	2.14837	0.00124892	6.64801e-4	0.0137791	0.00820018
chr2	70087654	70087743	1878477	0	+	0.719101	(0.59,1]	chr2	177394	3	UTR5	UTR5:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	13	114	2	2.05954	2.08523	2.11092	0.00660398	0.00193305	0.045496	0.0184698
chr3	96617465	96617561	4316742	0	-	0.375	(0.36,0.39]	chr3	360010	3	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	74	311	2	1.1767	2.085065	2.99343	0.0169887	1.32038e-8	0.08938	9.86629e-7
chr12	93410733	93410814	13472822	0	-	0.493827	(0.49,0.53]	chr12	1059388	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	1.75643	2.085035	2.41364	0.0293825	0.0112538	0.129773	0.0665375
chr19	19505869	19505968	17263978	0	+	0.515152	(0.49,0.53]	chr19	1426397	5	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	27	2	1.65324	2.084975	2.51671	0.0407792	0.00768763	0.163285	0.050396
chr1	39576603	39576696	953098	0	-	0.483871	(0.455,0.49]	chr1	100599	8	UTR5	UTR5:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000451091.2:ENST00000531243.2	protein_coding	protein_coding	protein_coding	protein_coding	14	57	2	2.00242	2.084885	2.16735	0.0074882	7.89511e-4	0.0495195	0.00983876
chr19	2272971	2273008	17196009	0	+	0.540541	(0.53,0.59]	chr19	1412854	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	OAZ1:LLfos-48D6.2	ENSG00000104904.12:ENSG00000273734.1	ENST00000590943.6:ENST00000602676.6:ENST00000581150.6:ENST00000621615.1:ENST00000582888.8:ENST00000593012.1:ENST00000586054.2:ENST00000592727.3:ENST00000589739.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	99	2	1.9586	2.084815	2.21103	0.00125733	7.99474e-4	0.0133575	0.00995461
chr17	68532437	68532536	16337438	0	+	0.242424	[0,0.29]	chr17	1325397	21	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000588188.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	24	2	1.65198	2.0846150000000003	2.51725	0.0369328	0.00319723	0.151225	0.0267978
chr19	7640711	7640809	17217848	0	+	0.55102	(0.53,0.59]	chr19	1416908	4	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTD-3214H19.4:STXBP2	ENSG00000268400.5:ENSG00000076944.16	ENST00000598664.5:ENST00000595866.1:ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5:ENST00000612033.1:ENST00000599648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	23	2	1.89806	2.084595	2.27113	0.0532477	0.0178853	0.184818	0.0918323
chr1	168243737	168243837	526506	0	+	0.53	(0.49,0.53]	chr1	56538	13	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	2.05119	2.08451	2.11783	0.0360743	0.0142725	0.145024	0.0780078
chr5	163441885	163441964	6343406	0	+	0.341772	(0.33,0.36]	chr5	493999	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCNG1	ENSG00000113328.19	ENST00000512163.5:ENST00000393929.5:ENST00000340828.7:ENST00000510664.5:ENST00000511683.6:ENST00000504553.2:ENST00000514367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	70	2	1.70359	2.084215	2.46484	0.0245566	4.48148e-5	0.114841	9.38029e-4
chr12	69258925	69259009	12941584	0	+	0.595238	(0.59,1]	chr12	1008748	5	CDS	CDS:UTR3:EXON_MRNA:INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	45	2	1.47272	2.083745	2.69477	0.0488838	0.020208	0.175974	0.0978331
chr2	65088106	65088202	2708068	0	-	0.3125	(0.29,0.33]	chr2	241346	14	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAB1A	ENSG00000138069.18	ENST00000649427.1:ENST00000494188.1:ENST00000409784.8:ENST00000409892.5:ENST00000409751.1:ENST00000398529.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	48	133	2	1.97447	2.083555	2.19264	2.32967e-4	8.42176e-5	0.00355688	0.00173087
chr4	102796435	102796533	5563917	0	-	0.306122	(0.29,0.33]	chr4	444349	22	UTR3	UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	28	2	1.54476	2.083435	2.62211	0.02721	0.00310562	0.120682	0.0274272
chr1	17438321	17438414	874326	0	-	0.795699	(0.59,1]	chr1	89664	2	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	8	73	2	2.0452	2.083285	2.12137	0.0179494	0.00514111	0.0939469	0.0393276
chr5	133955701	133955798	6843125	0	-	0.443299	(0.42,0.455]	chr5	523541	3	UTR3	UTR3:EXON_MRNA	C5orf15	ENSG00000113583.8	ENST00000231512.5	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.69266	2.083225	2.47379	0.0354788	0.00996858	0.143019	0.0621728
chr5	139364653	139364743	6249358	0	+	0.444444	(0.42,0.455]	chr5	487041	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	PAIP2	ENSG00000120727.13	ENST00000507755.5:ENST00000265192.9:ENST00000510409.1:ENST00000511381.1:ENST00000511706.5:ENST00000394795.6:ENST00000510080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	25	2	1.69266	2.083225	2.47379	0.0354788	0.00996858	0.143019	0.0621728
chr11	5300219	5300318	12241088	0	-	0.282828	[0,0.29]	chr11	946132	80	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	32	2	1.89356	2.08294	2.27232	0.00930718	0.00296574	0.0587563	0.0263871
chr8	116655855	116655930	10034017	0	-	0.44	(0.42,0.455]	chr8	755338	1	CDS	CDS:EXON_MRNA	EIF3H	ENSG00000147677.11	ENST00000521861.6:ENST00000611080.1:ENST00000276682.8:ENST00000520289.1:ENST00000518949.5:ENST00000518995.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	68	2	1.957	2.08284	2.20868	0.0019911	0.00152929	0.019572	0.0155135
chr1	155737004	155737063	484577	0	+	0.305085	(0.29,0.33]	chr1	51002	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000477394.5:ENST00000475056.5:ENST00000490249.5:ENST00000463295.1:ENST00000476444.1:ENST00000491777.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	43	2	1.86069	2.08265	2.30461	0.021654	5.08758e-4	0.103926	0.00661955
chr11	32933838	32933937	11899065	0	+	0.40404	(0.39,0.42]	chr11	909001	22	CDS	CDS:EXON_MRNA:EXON_LNCRNA	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	45	2	1.92026	2.0824000000000003	2.24454	0.00726512	0.00181306	0.0487474	0.0183913
chr2	151476550	151476649	2134950	0	+	0.282828	[0,0.29]	chr2	197868	16	UTR3	UTR3:EXON_MRNA:INTRON	RIF1	ENSG00000080345.18	ENST00000444746.7:ENST00000243326.9:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	28	2	2.03267	2.082225	2.13178	0.0131453	0.00489392	0.0733537	0.0366648
chr19	8321655	8321703	17219823	0	+	0.645833	(0.59,1]	chr19	1417488	1	CDS	CDS:EXON_MRNA	RPS28	ENSG00000233927.5	ENST00000449223.3:ENST00000602140.1:ENST00000600659.3:ENST00000417088.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	219	2	1.55646	2.0821449999999997	2.60783	0.010461	6.16037e-5	0.063428	0.00122786
chr20	16670640	16670691	17914717	0	-	0.411765	(0.39,0.42]	chr20	1516018	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200494.1	ENST00000363624.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	42	143	2	1.22443	2.082105	2.93978	0.016308	4.78359e-7	0.0866586	2.37613e-5
chr20	5100124	5100219	17887640	0	-	0.4	(0.39,0.42]	chr20	1514035	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	63	2	1.94189	2.081785	2.22168	0.00208619	0.00132678	0.0196013	0.0144372
chr11	59637502	59637601	12401030	0	-	0.494949	(0.49,0.53]	chr11	959467	9	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	11	48	2	1.52104	2.08175	2.64246	0.0273533	5.94013e-4	0.123591	0.00745979
chr1	632423	632519	493	0	+	0.322917	(0.29,0.33]	chr1	106	15	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	71	192	2	1.77181	2.081515	2.39122	4.90473e-4	5.487e-6	0.00640457	1.82585e-4
chr11	65435384	65435483	11984697	0	+	0.333333	(0.33,0.36]	chr11	920390	114	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	13	42	2	2.05486	2.08142	2.10798	0.00458903	0.00285394	0.0355575	0.0245841
chr22	41663892	41663970	18381718	0	+	0.461538	(0.455,0.49]	chr22	1564737	2	UTR3	UTR3:EXON_MRNA	XRCC6	ENSG00000196419.13	ENST00000428575.6:ENST00000402580.7:ENST00000360079.8:ENST00000359308.8:ENST00000405878.5:ENST00000405506.2	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.92777	2.08128	2.23479	0.0286531	0.0209335	0.128685	0.101282
chr9	131195232	131195294	10496337	0	+	0.419355	(0.39,0.42]	chr9	793345	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.5:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	130	2	1.51777	2.08127	2.64477	0.00574401	6.66063e-6	0.0426551	1.97214e-4
chr14	102729967	102730066	14500067	0	+	0.515152	(0.49,0.53]	chr14	1133640	36	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	9	41	2	2.02795	2.081265	2.13458	0.0110299	0.00409201	0.0652374	0.0322679
chr10	73251849	73251936	11570297	0	-	0.551724	(0.53,0.59]	chr10	880687	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3:ENST00000471251.5:ENST00000473427.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	31	2	1.61377	2.081105	2.54844	0.0436338	0.00663226	0.170594	0.0461575
chr19	34401076	34401172	17300578	0	+	0.541667	(0.53,0.59]	chr19	1429899	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000592740.5:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	1.69162	2.08081	2.47	0.0342431	0.0089333	0.141233	0.0567495
chr20	3870636	3870735	17659179	0	+	0.262626	[0,0.29]	chr20	1493074	46	UTR3	UTR3:EXON_MRNA	MAVS	ENSG00000088888.18	ENST00000416600.6:ENST00000428216.4	protein_coding	protein_coding	protein_coding	protein_coding	6	14	2	1.72144	2.0805700000000003	2.4397	0.0389538	0.0388194	0.158558	0.149227
chr1	109652007	109652099	399628	0	+	0.445652	(0.42,0.455]	chr1	39003	8	EXON_PSEUDO	EXON_PSEUDO	RPL7P8	ENSG00000235045.2	ENST00000411964.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	26	2	1.96397	2.080355	2.19674	0.0254904	0.0138503	0.117089	0.0759947
chr10	79513407	79513505	11148983	0	+	0.418367	(0.39,0.42]	chr10	847459	4	UTR3	UTR3:EXON_MRNA	EIF5AL1	ENSG00000253626.4	ENST00000520547.4	protein_coding	protein_coding	protein_coding	protein_coding	11	38	2	1.41237	2.08033	2.74829	0.0377681	8.96426e-4	0.154092	0.0102618
chr3	195295707	195295799	4658675	0	-	0.434783	(0.42,0.455]	chr3	384898	1	CDS	CDS:EXON_MRNA	ACAP2	ENSG00000114331.15	ENST00000326793.11:ENST00000618471.4:ENST00000450200.1:ENST00000475905.5:ENST00000635383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	26	2	1.58967	2.08009	2.57051	0.026634	0.0265466	0.120071	0.118265
chr3	150741401	150741493	4518345	0	-	0.434783	(0.42,0.455]	chr3	375083	4	UTR3	UTR3:EXON_MRNA	SIAH2	ENSG00000181788.4	ENST00000312960.4	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.58962	2.0800650000000003	2.57051	0.0352	0.0265466	0.142054	0.120071
chr9	125302061	125302140	10461125	0	+	0.443038	(0.42,0.455]	chr9	788017	2	CDS	CDS:UTR5:EXON_MRNA	GAPVD1	ENSG00000165219.22	ENST00000497580.5:ENST00000461379.5:ENST00000297933.11:ENST00000394084.5:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000265956.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	23	2	1.58962	2.0800650000000003	2.57051	0.0352	0.0265466	0.142054	0.120071
chr1	44761915	44761983	174013	0	+	0.441176	(0.42,0.455]	chr1	22387	1	CDS	CDS:EXON_MRNA	KIF2C	ENSG00000142945.13	ENST00000372224.9:ENST00000372217.5:ENST00000423289.1	protein_coding	protein_coding	protein_coding	protein_coding	10	41	2	1.93075	2.08004	2.22933	0.0102262	0.0048704	0.062872	0.0366486
chr2	85321280	85321379	2770123	0	-	0.393939	(0.39,0.42]	chr2	245643	34	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.01081	2.079905	2.149	0.0207537	0.0149155	0.100574	0.0812412
chr16	11351081	11351178	15543386	0	+	0.340206	(0.33,0.36]	chr16	1231099	4	UTR3	UTR3:EXON_MRNA:INTRON	RMI2	ENSG00000175643.10	ENST00000649869.1:ENST00000572173.1:ENST00000576027.1:ENST00000312499.6:ENST00000648619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	22	2	1.52414	2.07935	2.63456	0.0461827	0.00707461	0.16975	0.0478528
chr6	7229395	7229494	7031165	0	+	0.575758	(0.53,0.59]	chr6	538731	5	CDS	CDS:EXON_MRNA	RREB1	ENSG00000124782.20	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	2.01641	2.07923	2.14205	0.0123179	0.0108917	0.070688	0.0645168
chr15	57955097	57955196	15305105	0	-	0.565657	(0.53,0.59]	chr15	1208082	18	UTR3	UTR3:EXON_MRNA	ALDH1A2	ENSG00000128918.15	ENST00000537372.5:ENST00000558384.1:ENST00000249750.9:ENST00000560312.5:ENST00000347587.7:ENST00000430119.6:ENST00000558231.5:ENST00000559517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	37	2	1.78852	2.079215	2.36991	0.0249781	0.00501452	0.116495	0.0370872
chr3	49012469	49012567	3459265	0	+	0.622449	(0.59,1]	chr3	301931	8	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000489684.2:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	38	2	2.03921	2.079075	2.11894	0.0371471	0.0293157	0.151849	0.128478
chr22	38484635	38484735	18509605	0	-	0.41	(0.39,0.42]	chr22	1579957	13	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8	protein_coding	protein_coding	protein_coding	protein_coding	28	116	2	1.39328	2.07882	2.76436	0.0170583	3.24057e-6	0.0896731	1.07746e-4
chr19	8488754	8488854	17220866	0	+	0.53	(0.49,0.53]	chr19	1417707	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000596295.1:ENST00000602219.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	34	2	1.77058	2.078705	2.38683	0.0133397	0.012654	0.0743125	0.0718207
chr1	202941016	202941108	1453180	0	-	0.478261	(0.455,0.49]	chr1	146051	3	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	51	2	1.62161	2.07842	2.53523	0.0086127	0.00270505	0.0555142	0.0243939
chr11	85958454	85958552	12525714	0	-	0.204082	[0,0.29]	chr11	972155	14	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	31	91	2	1.59462	2.07842	2.56222	0.00940747	1.00883e-5	0.0591608	2.79048e-4
chr17	40390064	40390164	16538743	0	-	0.49	(0.455,0.49]	chr17	1354553	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000578412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	51	2	1.62161	2.07842	2.53523	0.0086127	0.00270505	0.0555142	0.0243939
chr11	64197270	64197333	11979244	0	+	0.460317	(0.455,0.49]	chr11	918709	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000544739.5:ENST00000537479.5:ENST00000538497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	45	2	1.62138	2.078305	2.53523	0.012162	0.00270505	0.0701019	0.0243939
chr18	9536233	9536332	16753983	0	+	0.444444	(0.42,0.455]	chr18	1381612	4	UTR3	UTR3:EXON_MRNA	RALBP1	ENSG00000017797.13	ENST00000019317.8:ENST00000383432.8	protein_coding	protein_coding	protein_coding	protein_coding	10	38	2	1.67369	2.07814	2.48259	0.0164719	0.0031851	0.0873033	0.0267166
chr16	4257571	4257667	15835242	0	-	0.46875	(0.455,0.49]	chr16	1264090	5	UTR3	UTR3:EXON_MRNA	TFAP4	ENSG00000090447.12	ENST00000204517.11:ENST00000575672.1:ENST00000575320.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	25	2	1.68956	2.0779	2.46624	0.0381365	0.0094145	0.155455	0.0592633
chr1	26255666	26255765	108662	0	+	0.606061	(0.59,1]	chr1	12909	6	CDS	CDS:EXON_MRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.67735	2.07786	2.47837	0.0534288	0.00970721	0.184995	0.0608296
chr21	37367057	37367152	18115921	0	+	0.663158	(0.59,1]	chr21	1536187	4	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1	protein_coding	protein_coding	protein_coding	protein_coding	5	46	2	1.67735	2.07786	2.47837	0.0534288	0.00970721	0.184995	0.0608296
chr17	42779157	42779245	16229787	0	+	0.556818	(0.53,0.59]	chr17	1313397	2	UTR3	UTR3:EXON_MRNA	VPS25	ENSG00000131475.7	ENST00000253794.7:ENST00000589520.1	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.78129	2.07764	2.37399	0.0173127	0.0126178	0.0914071	0.0717599
chrX	71301051	71301145	18730907	0	+	0.319149	(0.29,0.33]	chrX	1598445	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	58	2	1.67976	2.07758	2.4754	0.023292	7.91195e-5	0.110214	0.0015028
chr7	23512987	23513082	8725913	0	-	0.463158	(0.455,0.49]	chr7	666156	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TRA2A	ENSG00000164548.11	ENST00000297071.9:ENST00000392502.8:ENST00000538367.5:ENST00000621813.4:ENST00000494255.5:ENST00000474586.5:ENST00000490942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	30	2	1.61991	2.0775699999999997	2.53523	0.0447186	0.00270505	0.166115	0.0243939
chr15	66491079	66491172	14983874	0	+	0.311828	(0.29,0.33]	chr15	1177919	6	UTR3	UTR3:EXON_MRNA	MAP2K1	ENSG00000169032.10	ENST00000307102.10:ENST00000566326.1	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	1.70137	2.07755	2.45373	0.0156405	0.0149082	0.084273700000000007	0.0810583
chr1	225401690	225401785	1528051	0	-	0.410526	(0.39,0.42]	chr1	152775	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	60	2	1.98503	2.0772	2.16937	0.00330114	0.00102934	0.028478	0.0114463
chr9	97983411	97983483	10381010	0	+	0.805556	(0.59,1]	chr9	781848	2	UTR5	UTR5:EXON_MRNA	ANP32B	ENSG00000136938.9	ENST00000339399.5	protein_coding	protein_coding	protein_coding	protein_coding	29	248	2	2.05208	2.077195	2.10231	0.00114459	5.53741e-4	0.0130468	0.00703764
chr6	34245076	34245172	7124345	0	+	0.635417	(0.59,1]	chr6	548262	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000478214.1:ENST00000374116.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	95	788	2	1.94619	2.07701	2.20783	3.20457e-4	1.14082e-4	0.00459126	0.00217853
chr1	194190047	194190145	640482	0	+	0.44898	(0.42,0.455]	chr1	64400	12	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-563D10.1:EEF1A1P14	ENSG00000227240.2:ENSG00000233057.1	ENST00000656143.1:ENST00000655677.1:ENST00000454538.1:ENST00000421195.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	29	122	2	1.77555	2.07694	2.37833	0.00312794	3.62881e-5	0.0275928	7.92953e-4
chr19	34229088	34229188	17299093	0	+	0.39	(0.36,0.39]	chr19	1429709	18	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	35	2	1.85406	2.0769	2.29974	0.00926291	0.00722993	0.0586162	0.0485215
chr6	159798352	159798429	7527038	0	+	0.246753	[0,0.29]	chr6	574573	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MRPL18	ENSG00000112110.10	ENST00000367034.5:ENST00000480842.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	18	2	1.94841	2.0768750000000002	2.20534	0.0427374	0.0117033	0.168094	0.0685676
chr22	20917934	20918034	18299859	0	+	0.71	(0.59,1]	chr22	1553632	1	CDS_START	CDS_START:CDS:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	121	2	1.86296	2.076825	2.29069	0.00598051	0.00164656	0.0428861	0.0171652
chrX	142202690	142202777	19261774	0	-	0.344828	(0.33,0.36]	chrX	1636099	5	UTR3	UTR3:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	10	32	2	1.72403	2.07661	2.42919	0.0238301	0.00151039	0.109562	0.0160934
chr2	47803419	47803507	1788238	0	+	0.522727	(0.49,0.53]	chr2	172674	1	CDS	CDS:UTR3:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	1.93897	2.07655	2.21413	0.0151118	0.00995539	0.0820541	0.0621728
chr3	31636840	31636937	3392505	0	+	0.340206	(0.33,0.36]	chr3	295101	9	UTR3	UTR3:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.96645	2.07654	2.18663	0.0197415	0.00609632	0.095966	0.043509
chr6	31636348	31636419	7115918	0	+	0.56338	(0.53,0.59]	chr6	545901	3	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000487839.1:ENST00000492691.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	71	2	1.6665	2.07654	2.48658	0.011881	3.78696e-4	0.0686664	0.00525548
chrX	20154997	20155097	18985628	0	-	0.29	[0,0.29]	chrX	1616690	52	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000457145.6:ENST00000643073.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	30	2	1.37916	2.0763599999999998	2.77356	0.0445107	9.10413e-4	0.172163	0.0103519
chr1	161362730	161362825	500109	0	+	0.610526	(0.59,1]	chr1	54185	3	UTR3	UTR3:EXON_MRNA	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8	protein_coding	protein_coding	protein_coding	protein_coding	6	54	2	1.96195	2.076235	2.19052	0.0237927	0.0144738	0.109413	0.0790046
chr19	6418788	6418876	17442249	0	-	0.625	(0.59,1]	chr19	1456811	2	CDS	CDS:EXON_MRNA	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000619396.4:ENST00000599395.5:ENST00000595112.5:ENST00000595548.5:ENST00000595258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	49	2	1.8279	2.076225	2.32455	0.0520547	0.015383	0.193787	0.0833374
chr4	42086224	42086323	4810586	0	+	0.343434	(0.33,0.36]	chr4	397073	2	UTR3	UTR3:EXON_MRNA	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12:ENST00000505523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	32	2	1.89957	2.076105	2.25264	0.0122916	0.00367014	0.0706701	0.0308215
chr5	91370410	91370508	6695313	0	-	0.367347	(0.36,0.39]	chr5	516141	19	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	25	87	2	2.0618	2.0761	2.0904	0.00138774	3.25859e-4	0.0149724	0.00464766
chr1	155290079	155290177	1307531	0	-	0.489796	(0.455,0.49]	chr1	132189	9	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.79605	2.0756	2.35515	0.0427708	0.0140117	0.168094	0.0767536
chr17	2324095	2324195	16405945	0	-	0.46	(0.455,0.49]	chr17	1335318	18	UTR3	UTR3:EXON_MRNA	TSR1	ENSG00000167721.11	ENST00000301364.10	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.79605	2.0756	2.35515	0.0427708	0.0140117	0.168094	0.0767536
chr6	31641319	31641370	7661392	0	-	0.470588	(0.455,0.49]	chr6	584816	1	CDS	CDS:UTR3:EXON_MRNA	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000441793.6:ENST00000362049.10:ENST00000439687.6:ENST00000678272.1:ENST00000462875.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.79605	2.0756	2.35515	0.0427708	0.0140117	0.168094	0.0767536
chr1	161600154	161600242	501379	0	+	0.375	(0.36,0.39]	chr1	54333	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP11-25K21.6:FCGR2C	ENSG00000273112.1:ENSG00000244682.7	ENST00000537821.2:ENST00000543859.5:ENST00000467903.5:ENST00000507374.5:ENST00000508651.1	lncRNA	protein_coding	lncRNA:polymorphic_pseudogene	protein_coding:lncRNA:processed_transcript	16	52	2	1.64719	2.07545	2.50371	0.0078359	8.6826e-4	0.0512668	0.0106624
chr7	156683877	156683977	9145637	0	-	0.36	(0.33,0.36]	chr7	699160	62	UTR3	UTR3:EXON_MRNA	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	23	2	1.57909	2.07531	2.57153	0.0532274	0.00330025	0.184818	0.028478
chrX	65741833	65741931	18716384	0	+	0.306122	(0.29,0.33]	chrX	1596885	21	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	24	65	2	1.60532	2.07525	2.54518	0.00592798	1.26057e-4	0.0428236	0.00239277
chr16	88715714	88715784	16074389	0	-	0.585714	(0.53,0.59]	chr16	1291603	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	PIEZO1:MIR4722	ENSG00000103335.22:ENSG00000284585.1	ENST00000301015.14:ENST00000419505.5:ENST00000484567.6:ENST00000518793.6:ENST00000521877.1:ENST00000327397.8:ENST00000578292.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	6	33	2	1.76849	2.0751999999999997	2.38191	0.0420665	0.00477439	0.158792	0.0368489
chr2	96291750	96291825	2790454	0	-	0.573333	(0.53,0.59]	chr2	248791	1	CDS	CDS:EXON_MRNA	SNRNP200	ENSG00000144028.15	ENST00000323853.10:ENST00000652267.1	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	1.77634	2.075165	2.37399	0.025972	0.0126178	0.117079	0.0717599
chr22	16649821	16649921	18286217	0	+	0.48	(0.455,0.49]	chr22	1551703	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	23	2	1.96875	2.075015	2.18128	0.0480352	0.0111696	0.180552	0.0665375
chr1	205717981	205718080	1462035	0	-	0.383838	(0.36,0.39]	chr1	147460	53	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	67	219	2	2.04535	2.0748800000000003	2.10441	8.15022e-5	5.00838e-5	0.00154201	0.00113609
chr3	23807269	23807369	3357665	0	+	0.52	(0.49,0.53]	chr3	294074	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000484048.1:ENST00000346855.7:ENST00000495141.5:ENST00000481622.1:ENST00000442670.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	37	2	2.01464	2.07461	2.13458	0.0205094	0.00409201	0.0991175	0.0322679
chr12	93401271	93401371	13019166	0	+	0.26	[0,0.29]	chr12	1013446	20	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.83778	2.074555	2.31133	0.00861873	0.00696038	0.0555459	0.0474632
chr12	112027864	112027962	13542712	0	-	0.336735	(0.33,0.36]	chr12	1065562	13	UTR3	UTR3:EXON_MRNA	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	17	2	1.97842	2.0745	2.17058	0.0469469	0.01664	0.171977	0.0878065
chr2	9440490	9440578	1625821	0	+	0.420455	(0.42,0.455]	chr2	161243	1	CDS	CDS:EXON_MRNA	CPSF3	ENSG00000119203.14	ENST00000238112.8:ENST00000460593.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.95205	2.074395	2.19674	0.0254904	0.0248244	0.117089	0.113644
chr5	154875632	154875728	6315262	0	+	0.479167	(0.455,0.49]	chr5	492585	3	UTR3	UTR3:EXON_MRNA	CNOT8	ENSG00000155508.14	ENST00000517876.5:ENST00000403027.6:ENST00000521450.5:ENST00000285896.11	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.62042	2.07388	2.52734	0.0320389	0.00792433	0.133433	0.0523592
chr2	44318973	44319071	2624123	0	-	0.397959	(0.39,0.42]	chr2	236318	15	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	1.65028	2.073645	2.49701	0.0339607	0.0292034	0.141431	0.128158
chr6	67881020	67881113	7784069	0	-	0.505376	(0.49,0.53]	chr6	596219	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1	lncRNA	lncRNA	lncRNA	lncRNA	62	272	2	1.82288	2.073625	2.32437	5.75694e-4	8.75132e-6	0.00784185	2.46682e-4
chrX	124100793	124100891	18852587	0	+	0.244898	[0,0.29]	chrX	1606330	3	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	33	2	1.73193	2.07354	2.41515	0.0218934	0.00119134	0.104942	0.0128164
chr5	32355477	32355571	6518896	0	-	0.393617	(0.39,0.42]	chr5	504941	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFR	ENSG00000056097.16	ENST00000265069.13:ENST00000514356.5:ENST00000502988.5:ENST00000510369.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	30	2	2.03292	2.073455	2.11399	0.014455	0.00788976	0.0787564	0.0522564
chr11	61800023	61800123	12405901	0	-	0.51	(0.49,0.53]	chr11	960580	5	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	21	88	2	2.00856	2.07337	2.13818	0.00171273	6.48144e-4	0.0167744	0.00857106
chr2	68179621	68179717	2716494	0	-	0.322917	(0.29,0.33]	chr2	241809	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-474G23.1:PPP3R1	ENSG00000273398.6:ENSG00000221823.11	ENST00000406334.3:ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	31	2	1.86069	2.0733699999999997	2.28605	0.021654	0.00224889	0.103926	0.0207945
chr12	76047333	76047432	13423845	0	-	0.292929	(0.29,0.33]	chr12	1056597	109	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7	protein_coding	protein_coding	protein_coding	protein_coding	32	91	2	1.94115	2.07319	2.20523	4.85282e-4	4.6889e-4	0.00681794	0.00619955
chr17	67109590	67109686	16651032	0	-	0.395833	(0.39,0.42]	chr17	1369353	6	CDS	CDS:UTR3:EXON_MRNA	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	19	2	1.64934	2.073175	2.49701	0.0412247	0.0339607	0.155868	0.141431
chr1	149885026	149885121	1287093	0	-	0.463158	(0.455,0.49]	chr1	127851	7	UTR3	UTR3:EXON_MRNA	H2BC21	ENSG00000184678.10	ENST00000369155.3	protein_coding	protein_coding	protein_coding	protein_coding	12	57	2	1.68956	2.07316	2.45676	0.0381365	1.78068e-4	0.155455	0.00288429
chr1	114732674	114732745	1239755	0	-	0.450704	(0.42,0.455]	chr1	121396	2	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	12	49	2	2.0286	2.07302	2.11744	0.00497755	0.00302631	0.0381953	0.0257942
chr3	41868997	41869095	4138434	0	-	0.377551	(0.36,0.39]	chr3	345735	1	EXON_SMALL	EXON_SMALL:INTRON	ULK4:Y_RNA	ENSG00000168038.11:ENSG00000251986.1	ENST00000301831.9:ENST00000516177.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	15	50	2	1.68091	2.072985	2.46506	0.00963667	5.97135e-4	0.060582	0.0080833
chr12	4302483	4302582	12704468	0	+	0.484848	(0.455,0.49]	chr12	985544	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	22	2	1.8708	2.07286	2.27492	0.0324007	0.0193827	0.134751	0.0943643
chrX	154352358	154352447	19277994	0	-	0.573034	(0.53,0.59]	chrX	1638256	3	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000474358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	42	2	1.94437	2.07265	2.20093	0.0143432	0.00507963	0.0783202	0.037544
chr15	57286955	57287055	14950144	0	+	0.31	(0.29,0.33]	chr15	1174949	9	UTR3	UTR3:EXON_MRNA:INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000557843.5:ENST00000343827.7:ENST00000560836.1:ENST00000560948.1	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.90299	2.072625	2.24226	0.0306054	0.0126076	0.130226	0.0719957
chr16	1962197	1962225	15823809	0	-	0.571429	(0.53,0.59]	chr16	1261851	1	CDS	CDS:UTR3:EXON_MRNA	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	157	2	1.76067	2.072515	2.38436	0.00243812	3.89789e-5	0.0228982	8.43247e-4
chr1	186327526	186327593	1411862	0	-	0.492537	(0.49,0.53]	chr1	142822	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.76393	2.07245	2.38097	0.0425419	0.0279906	0.167547	0.123926
chr19	41307129	41307223	17334339	0	+	0.393617	(0.39,0.42]	chr19	1436801	7	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000392006.8	protein_coding	protein_coding	protein_coding	protein_coding	30	104	2	1.69953	2.07232	2.44511	0.00205456	1.05318e-4	0.0193908	0.00204082
chr11	77886512	77886612	12033762	0	+	0.46	(0.455,0.49]	chr11	928087	12	INTRON	INTRON	AAMDC	ENSG00000087884.14	ENST00000532481.5:ENST00000526164.5:ENST00000527134.5:ENST00000304716.12:ENST00000630098.2:ENST00000529666.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	514	2040	2	1.68199	2.072315	2.46264	2.04179e-4	2.76233e-7	0.00346445	1.33203e-5
chr7	56080370	56080470	8290747	0	+	0.5	(0.49,0.53]	chr7	631576	6	UTR3	UTR3:EXON_MRNA	SUMF2	ENSG00000129103.19	ENST00000651354.1:ENST00000651586.1:ENST00000652303.1:ENST00000275607.13:ENST00000650735.1:ENST00000342190.11:ENST00000436782.5:ENST00000434526.8:ENST00000423763.5:ENST00000438133.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	31	2	1.87747	2.07194	2.26641	0.0190546	0.0123515	0.093872	0.0708681
chr1	150579232	150579331	1288973	0	-	0.747475	(0.59,1]	chr1	128256	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1:ENST00000307940.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	52	2	1.72057	2.071905	2.42324	0.0314051	0.0116918	0.131369	0.0686664
chr18	21866362	21866462	16779512	0	+	0.34	(0.33,0.36]	chr18	1384234	18	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	11	37	2	1.93923	2.07186	2.20449	0.0142064	0.00197486	0.0777259	0.0188198
chr11	119305202	119305301	12163801	0	+	0.474747	(0.455,0.49]	chr11	938080	56	UTR3	UTR3:EXON_MRNA:INTRON	CBL	ENSG00000110395.7	ENST00000634586.1:ENST00000264033.6:ENST00000637974.1:ENST00000634301.1	protein_coding	protein_coding	protein_coding	protein_coding	11	37	2	1.21465	2.07183	2.92901	0.0560488	0.00141135	0.192839	0.0151901
chr3	47846629	47846722	3456908	0	+	0.634409	(0.59,1]	chr3	301424	6	CDS	CDS:UTR3:EXON_MRNA	DHX30	ENSG00000132153.15	ENST00000395745.6:ENST00000445061.6:ENST00000348968.8:ENST00000446256.6:ENST00000619982.4:ENST00000457607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	38	2	1.96416	2.071525	2.17889	0.044741	0.025085	0.166115	0.116848
chr22	35413874	35413930	18359524	0	+	0.589286	(0.53,0.59]	chr22	1561027	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000464908.5:ENST00000493076.5:ENST00000493569.5:ENST00000465557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	27	2	1.78041	2.071425	2.36244	0.0407112	0.0131162	0.163285	0.073569
chr9	19378440	19378514	10595584	0	-	0.540541	(0.53,0.59]	chr9	801708	2	CDS	CDS:EXON_MRNA	RPS6	ENSG00000137154.13	ENST00000380394.9:ENST00000380384.5:ENST00000315377.4	protein_coding	protein_coding	protein_coding	protein_coding	40	196	2	2.00139	2.07132	2.14125	3.66754e-4	1.16784e-4	0.00551274	0.0020505
chr22	20951991	20952088	18300203	0	+	0.556701	(0.53,0.59]	chr22	1553647	23	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	27	2	1.76849	2.07124	2.37399	0.0420665	0.0126178	0.158792	0.0717599
chr5	154814193	154814290	6315012	0	+	0.536082	(0.53,0.59]	chr5	492515	2	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.76849	2.07124	2.37399	0.0420665	0.0126178	0.158792	0.0717599
chr5	70069234	70069330	6023114	0	+	0.572917	(0.53,0.59]	chr5	471844	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1:ENST00000503678.5:ENST00000511873.6:ENST00000509805.5:ENST00000505346.5:ENST00000514914.1:ENST00000508258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	27	2	1.87133	2.07123	2.27113	0.0308819	0.0178853	0.130016	0.0918323
chr15	64365909	64366004	15341393	0	-	0.294737	(0.29,0.33]	chr15	1211044	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5:ENST00000560234.1:ENST00000559280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	39	2	1.79223	2.0709999999999997	2.34977	0.0151293	9.41664e-4	0.0823648	0.010642
chr6	67882878	67882978	7784089	0	-	0.5	(0.49,0.53]	chr6	596223	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	99	389	2	1.68601	2.07092	2.45583	4.90676e-4	3.12977e-6	0.00640674	1.15746e-4
chr1	24843524	24843624	103304	0	+	0.35	(0.33,0.36]	chr1	12089	27	UTR3	UTR3:EXON_MRNA:INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	29	2	1.65713	2.0707	2.48427	0.0528205	0.00150101	0.195536	0.0152367
chr15	40220850	40220941	14880229	0	+	0.318681	(0.29,0.33]	chr15	1168286	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BUB1B:PAK6:BUB1B-PAK6	ENSG00000156970.13:ENSG00000137843.12:ENSG00000259288.7	ENST00000412359.7:ENST00000287598.11:ENST00000453867.7:ENST00000441369.6:ENST00000558658.6:ENST00000559435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	19	2	1.89849	2.070375	2.24226	0.0306054	0.0197274	0.130226	0.0983378
chr15	44525861	44525960	14899604	0	+	0.30303	(0.29,0.33]	chr15	1171638	18	UTR3	UTR3:EXON_MRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558373.5:ENST00000559175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	19	2	1.89849	2.070375	2.24226	0.0306054	0.0197274	0.130226	0.0983378
chr3	43714946	43715002	3441023	0	+	0.375	(0.36,0.39]	chr3	299372	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ABHD5	ENSG00000011198.10	ENST00000643520.1:ENST00000458276.7:ENST00000649763.1:ENST00000643140.1:ENST00000643500.1:ENST00000644371.2:ENST00000013894.3:ENST00000646378.1:ENST00000643477.1:ENST00000646799.1:ENST00000454293.2:ENST00000642351.1:ENST00000413300.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	25	2	1.81362	2.0702	2.32678	0.0193538	0.016627	0.0943643	0.0880236
chr5	127554485	127554585	6205054	0	+	0.37	(0.36,0.39]	chr5	483458	7	UTR3	UTR3:EXON_MRNA	PRRC1	ENSG00000164244.21	ENST00000296666.13:ENST00000512635.2	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.81362	2.0702	2.32678	0.0193538	0.016627	0.0943643	0.0880236
chrX	41349894	41349993	18669518	0	+	0.333333	(0.33,0.36]	chrX	1592243	21	UTR3	UTR3:EXON_MRNA:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642424.1:ENST00000642161.1:ENST00000646679.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	61	2	1.34418	2.070105	2.79603	0.0180503	8.41362e-5	0.0944666	0.00172936
chr11	3840893	3840959	12239119	0	-	0.772727	(0.59,1]	chr11	945711	1	UTR5	UTR5:EXON_MRNA	RHOG	ENSG00000177105.10	ENST00000351018.5	protein_coding	protein_coding	protein_coding	protein_coding	7	66	2	1.72824	2.070005	2.41177	0.0471232	0.00235332	0.179872	0.0215127
chr11	118758837	118758902	12625525	0	-	0.415385	(0.39,0.42]	chr11	979552	2	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	31	2	1.43377	2.06984	2.70591	0.0261859	0.0185716	0.117079	0.0932453
chr20	36048857	36048955	17956030	0	-	0.255102	[0,0.29]	chr20	1521358	34	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	24	56	2	1.63457	2.069495	2.50442	0.00698724	2.32754e-4	0.047573	0.00355688
chr11	10799551	10799619	12272559	0	-	0.323529	(0.29,0.33]	chr11	948979	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000525606.5:ENST00000528839.1:ENST00000534272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	45	2	1.99379	2.06941	2.14503	0.00354776	0.0018619	0.0300049	0.0179151
chr19	17862972	17863027	17255714	0	+	0.690909	(0.59,1]	chr19	1424759	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL18A	ENSG00000105640.13	ENST00000222247.10:ENST00000600147.5:ENST00000599898.5:ENST00000597648.5:ENST00000599870.1	protein_coding	protein_coding	protein_coding	protein_coding	27	237	2	1.62155	2.0693900000000003	2.51723	0.00792332	7.27693e-5	0.0523592	0.00139578
chr15	64674305	64674402	14978010	0	+	0.494845	(0.49,0.53]	chr15	1177302	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4:ENST00000559364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	32	2	1.75643	2.069235	2.38204	0.0293825	0.0049129	0.129773	0.0366648
chr8	116846030	116846128	10035149	0	-	0.306122	(0.29,0.33]	chr8	755410	2	UTR3	UTR3:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7	protein_coding	protein_coding	protein_coding	protein_coding	20	57	2	1.91436	2.06923	2.2241	0.00173656	0.00140253	0.0169976	0.0151232
chrX	123665641	123665739	19198827	0	-	0.418367	(0.39,0.42]	chrX	1632600	1	CDS	CDS:EXON_MRNA	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.64934	2.06921	2.48908	0.0412247	0.0101318	0.155868	0.0626311
chr11	34086141	34086219	11905341	0	+	0.474359	(0.455,0.49]	chr11	909541	2	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	49	2	1.97839	2.06912	2.15985	0.0128965	0.00217457	0.0722356	0.0202707
chr10	68982812	68982910	11093405	0	+	0.285714	[0,0.29]	chr10	843302	1	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	12	32	2	1.96979	2.06879	2.16779	0.00666045	0.00490349	0.0463232	0.0377365
chr16	24220411	24220511	15599292	0	+	0.28	[0,0.29]	chr16	1236923	4	UTR3	UTR3:EXON_MRNA	PRKCB	ENSG00000166501.14	ENST00000321728.12:ENST00000643927.1	protein_coding	protein_coding	protein_coding	protein_coding	9	22	2	1.33617	2.0687550000000003	2.80134	0.0560355	0.0049344	0.192804	0.0379087
chr15	44526159	44526258	14899607	0	+	0.383838	(0.36,0.39]	chr15	1171638	21	UTR3	UTR3:EXON_MRNA	CTDSPL2	ENSG00000137770.14	ENST00000260327.9:ENST00000558373.5	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.96997	2.0685700000000002	2.16717	0.0152504	0.00890772	0.0828908	0.0565003
chr11	58617804	58617903	11955351	0	+	0.525253	(0.49,0.53]	chr11	914993	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	32	2	2.01913	2.06848	2.11783	0.0142725	0.0111252	0.0780078	0.0665375
chr4	139340990	139341069	5127963	0	+	0.392405	(0.39,0.42]	chr4	415148	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1:ENST00000480277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	30	2	1.46372	2.06834	2.67296	0.0529342	0.00159022	0.184259	0.0168452
chr9	127451280	127451317	10860012	0	-	0.567568	(0.53,0.59]	chr9	822672	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	192	2	1.71797	2.06825	2.41853	0.00275025	1.5035e-5	0.0247437	3.8445e-4
chr8	144790412	144790470	10150931	0	-	0.603448	(0.59,1]	chr8	764118	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL8	ENSG00000161016.18	ENST00000534781.1:ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	167	2	1.16045	2.068165	2.97588	0.0527289	2.26633e-5	0.195536	5.39086e-4
chr6	34873134	34873233	7126499	0	+	0.353535	(0.33,0.36]	chr6	548490	8	UTR3	UTR3:EXON_MRNA:INTRON	UHRF1BP1	ENSG00000065060.17	ENST00000452449.6:ENST00000192788.6	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	2.05855	2.067955	2.07736	0.0442037	0.018622	0.172163	0.0952021
chrX	20138538	20138622	18985542	0	-	0.404762	(0.39,0.42]	chrX	1616682	1	CDS	CDS:EXON_MRNA:INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.98676	2.06788	2.149	0.0439902	0.0149155	0.163596	0.0812412
chr2	69325004	69325103	2718309	0	-	0.343434	(0.33,0.36]	chr2	241994	54	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9:ENST00000674507.1	protein_coding	protein_coding	protein_coding	protein_coding	8	22	2	1.36994	2.06772	2.7655	0.0479853	0.0175892	0.17535800000000001	0.0918323
chr5	129113561	129113654	6213818	0	+	0.258065	[0,0.29]	chr5	483806	7	UTR3	UTR3:EXON_MRNA	ISOC1	ENSG00000066583.12	ENST00000173527.6	protein_coding	protein_coding	protein_coding	protein_coding	11	34	2	1.72144	2.067555	2.41367	0.0389538	6.78943e-4	0.158558	0.0083133
chr21	25362183	25362283	18080031	0	+	0.58	(0.53,0.59]	chr21	1532967	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL13AP7	ENSG00000213885.4	ENST00000425147.1:ENST00000672784.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	39	189	2	1.99351	2.06745	2.14139	2.92562e-4	1.83852e-4	0.00429767	0.00320389
chr3	47122736	47122834	4159632	0	-	0.336735	(0.33,0.36]	chr3	347925	26	CDS	CDS:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000445387.5:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	13	2	1.82394	2.0671	2.31026	0.0519897	0.0494504	0.18557	0.18423900000000001
chr21	31694896	31694980	18211438	0	-	0.488095	(0.455,0.49]	chr21	1545322	2	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	1.8708	2.0670200000000003	2.26324	0.0324007	0.00868189	0.134751	0.0558093
chr7	75201218	75201316	8858086	0	-	0.459184	(0.455,0.49]	chr7	676788	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4:ENST00000614592.4:ENST00000611799.1:ENST00000620866.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	6	26	2	1.8708	2.0670200000000003	2.26324	0.0324007	0.00868189	0.134751	0.0558093
chr17	29293870	29293959	16491211	0	-	0.516854	(0.49,0.53]	chr17	1348899	2	CDS	CDS:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	13	49	2	1.25893	2.067005	2.87508	0.0425001	4.55699e-4	0.160303	0.00645757
chr20	36047679	36047777	17956018	0	-	0.428571	(0.42,0.455]	chr20	1521358	22	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	11	44	2	1.51711	2.066595	2.61608	0.0297484	6.89843e-4	0.129773	0.00842607
chr12	6770612	6770697	12713984	0	+	0.6	(0.59,1]	chr12	986785	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000538057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	163	2	1.88854	2.06659	2.24464	0.00211995	0.00203832	0.0200061	0.0198025
chr4	139389184	139389284	5128468	0	+	0.29	[0,0.29]	chr4	415252	12	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	22	56	2	1.88042	2.06647	2.25252	0.00331333	5.08646e-4	0.0285314	0.00661883
chr8	96309220	96309271	9962380	0	-	0.411765	(0.39,0.42]	chr8	751649	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000199732.1	ENST00000362862.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	78	270	2	1.76128	2.0661	2.37092	3.98584e-4	6.06048e-6	0.00546791	1.9935e-4
chr2	69322046	69322145	2718279	0	-	0.252525	[0,0.29]	chr2	241994	24	UTR3	UTR3:EXON_MRNA	GFPT1	ENSG00000198380.13	ENST00000361060.5:ENST00000357308.9	protein_coding	protein_coding	protein_coding	protein_coding	6	17	2	1.72806	2.066005	2.40395	0.0359089	0.0210081	0.144663	0.101116
chr5	179699001	179699097	6414130	0	+	0.78125	(0.59,1]	chr5	499107	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	258	2	1.54098	2.065495	2.59001	0.00805187	5.57948e-5	0.0530224	0.00112719
chrX	53937047	53937141	19078813	0	-	0.393617	(0.39,0.42]	chrX	1623084	5	UTR3	UTR3:EXON_MRNA	PHF8	ENSG00000172943.20	ENST00000357988.9:ENST00000338154.11:ENST00000338946.10	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	2.01677	2.06538	2.11399	0.0235818	0.014455	0.111323	0.0787564
chr4	77047637	77047734	5479166	0	-	0.340206	(0.33,0.36]	chr4	439254	6	UTR3	UTR3:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9	protein_coding	protein_coding	protein_coding	protein_coding	15	44	2	1.59596	2.065195	2.53443	0.0102083	0.00171856	0.0629963	0.0177536
chr10	68747373	68747469	11091445	0	+	0.5	(0.49,0.53]	chr10	842981	1	CDS	CDS:UTR3:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	40	2	1.94617	2.06517	2.18417	0.00934781	0.00578816	0.0589275	0.0427749
chr5	134606654	134606752	6846377	0	-	0.367347	(0.36,0.39]	chr5	523854	57	UTR3	UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000508363.5:ENST00000502539.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	26	2	1.66836	2.06506	2.46176	0.0474647	0.00365867	0.17993	0.0299719
chr16	28843074	28843148	15907756	0	-	0.540541	(0.53,0.59]	chr16	1273883	1	CDS	CDS:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000569217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	53	2	1.86855	2.0650199999999996	2.2614899999999998	0.0189167	0.00132759	0.0934721	0.0139137
chr2	61502264	61502310	2690612	0	-	0.347826	(0.33,0.36]	chr2	240405	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	43	2	2.05144	2.0648999999999997	2.07836	0.00903135	0.00180005	0.0573114	0.0174508
chr1	51781163	51781249	191617	0	+	0.476744	(0.455,0.49]	chr1	24544	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	25	2	1.72305	2.064845	2.40664	0.0324537	0.0123662	0.134899	0.0705839
chr12	124800199	124800242	13600374	0	-	0.55814	(0.53,0.59]	chr12	1071706	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	42	2	1.86855	2.0647599999999997	2.26097	0.0189167	0.00389622	0.0934721	0.0313006
chr1	40073770	40073867	954673	0	-	0.371134	(0.36,0.39]	chr1	100850	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5:ENST00000641381.1:ENST00000372775.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	28	2	1.80227	2.0645249999999997	2.32678	0.0193538	0.0123074	0.0943643	0.070688
chr8	58582579	58582672	9351280	0	+	0.290323	(0.29,0.33]	chr8	715167	10	UTR3	UTR3:EXON_MRNA	SDCBP	ENSG00000137575.12	ENST00000447182.6:ENST00000413219.6:ENST00000523483.5:ENST00000260130.9:ENST00000630925.1	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	1.98817	2.06451	2.14085	0.0117968	0.00889512	0.0686664	0.0565003
chr12	93083597	93083675	13470827	0	-	0.5	(0.49,0.53]	chr12	1059324	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-511B23.2:RPL41P5	ENSG00000257322.6:ENSG00000256393.1	ENST00000550324.5:ENST00000549930.1:ENST00000536425.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	17	84	2	1.40951	2.064505	2.7195	0.0337211	1.89338e-5	0.141327	4.64552e-4
chr6	29636059	29636153	7655203	0	-	0.468085	(0.455,0.49]	chr6	583507	1	EXON_PSEUDO	EXON_PSEUDO	SUMO2P1	ENSG00000235238.1	ENST00000445436.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	20	2	1.61991	2.064475	2.50904	0.0447186	0.0310515	0.166115	0.131262
chr2	47410093	47410186	1784576	0	+	0.419355	(0.39,0.42]	chr2	172455	1	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	35	2	1.74181	2.064315	2.38682	0.0245629	0.00228306	0.114841	0.0209856
chr17	59619953	59620042	16294806	0	+	0.696629	(0.59,1]	chr17	1321598	4	UTR5	UTR5:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	121	2	2.03295	2.064265	2.09558	0.00384188	0.00272994	0.0320512	0.0237575
chr1	155293513	155293590	1307568	0	-	0.584416	(0.53,0.59]	chr1	132205	2	CDS	CDS:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.96733	2.06385	2.16037	0.0254312	0.022694	0.117089	0.105117
chr12	56598617	56598717	13351668	0	-	0.55	(0.53,0.59]	chr12	1051593	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000549787.5	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.96733	2.06385	2.16037	0.0254312	0.022694	0.117089	0.105117
chr1	244856442	244856542	1591304	0	-	0.4	(0.39,0.42]	chr1	158402	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1:ENST00000640119.1:ENST00000483966.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	74	2	1.76569	2.0637	2.36171	0.0074442	1.63864e-4	0.0495757	0.00268375
chr22	16652413	16652513	18286243	0	+	0.51	(0.49,0.53]	chr22	1551703	40	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7:ENST00000415121.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	13	58	2	1.34075	2.063665	2.78658	0.0427685	1.13193e-4	0.168094	0.0020093
chr12	111525253	111525316	13540596	0	-	0.444444	(0.42,0.455]	chr12	1065358	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000471866.5:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	18	2	1.93033	2.063535	2.19674	0.0505055	0.0254904	0.181202	0.117089
chr7	44830044	44830143	8800320	0	-	0.454545	(0.42,0.455]	chr7	671362	34	UTR3	UTR3:EXON_MRNA	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.93033	2.063535	2.19674	0.0505055	0.0254904	0.181202	0.117089
chr5	6372502	6372601	6434298	0	-	0.424242	(0.42,0.455]	chr5	501445	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MED10	ENSG00000133398.4	ENST00000255764.4:ENST00000503112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	29	2	2.05515	2.063395	2.07164	0.017518	0.0101168	0.0924156	0.0626311
chr1	203016049	203016140	666752	0	+	0.43956	(0.42,0.455]	chr1	67052	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMEM183A	ENSG00000163444.12	ENST00000367242.4:ENST00000543891.5:ENST00000468449.5:ENST00000488097.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	27	2	1.71996	2.0633	2.40664	0.0542346	0.00445101	0.199653	0.0340751
chr11	62532579	62532679	12408758	0	-	0.5	(0.49,0.53]	chr11	960901	159	CDS	CDS:EXON_MRNA:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.56437	2.0631	2.56183	0.0379797	0.0261296	0.14882600000000001	0.118976
chr22	38483636	38483736	18509595	0	-	0.45	(0.42,0.455]	chr22	1579957	3	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8	protein_coding	protein_coding	protein_coding	protein_coding	13	54	2	1.87857	2.063095	2.24762	0.00949283	9.46614e-4	0.0596168	0.010681
chr21	8392839	8392938	18041458	0	+	0.707071	(0.59,1]	chr21	1530861	40	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2061	17715	2	1.8289	2.063035	2.29717	3.29754e-4	1.99617e-5	0.00469342	5.34476e-4
chr2	9630452	9630534	2508626	0	-	0.841463	(0.59,1]	chr2	226384	1	UTR5	UTR5:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding	4	35	2	1.72824	2.062855	2.39747	0.0471232	0.0430221	0.179872	0.161091
chr10	74090110	74090198	11117353	0	+	0.397727	(0.39,0.42]	chr10	846239	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10:ENST00000478896.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	35	2	2.02663	2.062325	2.09802	0.0130764	0.00495705	0.0729985	0.0368301
chr17	82085034	82085095	16710747	0	-	0.737705	(0.59,1]	chr17	1378186	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	7	62	2	1.9603	2.06227	2.16424	0.0141758	0.0123032	0.0776158	0.0705839
chr6	30724682	30724777	7112225	0	+	0.442105	(0.42,0.455]	chr6	545067	4	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	129	487	2	1.94399	2.06202	2.18005	6.98611e-5	9.51361e-6	0.00134756	2.9154e-4
chr16	18801430	18801466	15877171	0	-	0.583333	(0.53,0.59]	chr16	1269329	1	CDS_START	CDS_START:CDS:EXON_MRNA	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5:ENST00000567969.1:ENST00000566391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	21	2	1.76849	2.0618	2.35511	0.0445399	0.0420665	0.172163	0.158792
chr19	5664021	5664090	17210404	0	+	0.57971	(0.53,0.59]	chr19	1415344	1	CDS	CDS:UTR3:EXON_MRNA	SAFB	ENSG00000160633.13	ENST00000589863.5:ENST00000588852.2:ENST00000292123.9:ENST00000592224.5:ENST00000454510.5:ENST00000589006.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.76849	2.0618	2.35511	0.0445399	0.0420665	0.172163	0.158792
chr3	195787029	195787128	4661137	0	-	0.555556	(0.53,0.59]	chr3	385270	84	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	21	2	1.76849	2.0618	2.35511	0.0445399	0.0420665	0.172163	0.158792
chr19	810693	810726	17189580	0	+	0.575758	(0.53,0.59]	chr19	1411053	1	CDS	CDS:UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8:ENST00000621737.4:ENST00000585932.5:ENST00000585856.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	41	2	1.96946	2.061745	2.15403	0.0118065	0.0082201	0.0686664	0.0534646
chr15	69455169	69455228	15002385	0	+	0.627119	(0.59,1]	chr15	1179285	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RPLP1	ENSG00000137818.12	ENST00000357790.5:ENST00000260379.11:ENST00000487304.6:ENST00000560274.1:ENST00000488122.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	46	387	2	1.99554	2.061575	2.12761	5.58673e-4	3.40736e-4	0.00709723	0.00518358
chr3	33868911	33869010	3399927	0	+	0.393939	(0.39,0.42]	chr3	295769	25	UTR3	UTR3:EXON_MRNA	PDCD6IP	ENSG00000170248.15	ENST00000457054.6:ENST00000648706.1:ENST00000307296.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	20	2	1.77926	2.061375	2.34349	0.0429531	0.0169272	0.161091	0.0890655
chr22	20127127	20127203	18297535	0	+	0.263158	[0,0.29]	chr22	1553223	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	72	2	1.95031	2.061255	2.1722	8.61469e-4	5.98114e-4	0.0100487	0.00809446
chr7	102376622	102376722	8438463	0	+	0.44	(0.42,0.455]	chr7	644575	3	SS5_PROX	SS5_PROX:INTRON	PRKRIP1:RP11-163E9.2	ENSG00000128563.13:ENSG00000239969.6	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000484974.5:ENST00000492837.1:ENST00000482465.5:ENST00000462601.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	7	29	2	1.69266	2.06102	2.42938	0.0354788	0.0045028	0.143019	0.0349711
chr2	47800879	47800979	1788210	0	+	0.44	(0.42,0.455]	chr2	172666	20	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	30	2	1.63927	2.06093	2.48259	0.0455517	0.0031851	0.175554	0.0267166
chr19	34393913	34393989	17300497	0	+	0.631579	(0.59,1]	chr19	1429874	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	165	2	2.00025	2.06081	2.12137	0.00514111	0.00107055	0.0393276	0.0118238
chr1	229324546	229324644	1541555	0	-	0.336735	(0.33,0.36]	chr1	154303	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	37	2	1.61152	2.060745	2.50997	0.0205125	9.74806e-4	0.0995152	0.0116117
chr7	127363963	127364062	9057419	0	-	0.272727	[0,0.29]	chr7	691089	43	EXON_MRNA	EXON_MRNA:INTRON	ZNF800:AC000123.2	ENSG00000048405.10:ENSG00000280347.1	ENST00000485577.1:ENST00000624029.1	protein_coding	TEC	protein_coding:TEC	TEC:processed_transcript	7	20	2	1.96069	2.060715	2.16074	0.0222978	0.0162003	0.105845	0.0866586
chr12	6967170	6967226	13188875	0	-	0.5	(0.49,0.53]	chr12	1032796	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000537646.5:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000545555.2:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	50	2	1.57891	2.0605450000000003	2.54218	0.0281303	4.97012e-4	0.126918	0.0064868
chr16	28835616	28835687	15620390	0	+	0.704225	(0.59,1]	chr16	1238474	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000569318.1:ENST00000566007.5:ENST00000564162.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	13	86	2	1.26403	2.0604199999999997	2.85681	0.0395211	0.00235278	0.151769	0.0222204
chr4	75644135	75644235	5472854	0	-	0.35	(0.33,0.36]	chr4	438361	24	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	29	2	1.89957	2.060295	2.22102	0.0122916	0.00736622	0.0706701	0.0490627
chr10	32011131	32011227	11441767	0	-	0.3125	(0.29,0.33]	chr10	872367	23	UTR3	UTR3:EXON_MRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	15	42	2	1.79203	2.06014	2.32825	0.00781937	0.00115302	0.0511606	0.0130851
chr3	47678254	47678311	4162682	0	-	0.368421	(0.36,0.39]	chr3	348387	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000483847.1:ENST00000462198.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	23	2	1.66365	2.060105	2.45656	0.0345996	0.0100637	0.143631	0.0624019
chr19	11147045	11147133	17461166	0	-	0.352273	(0.33,0.36]	chr19	1461290	8	UTR3	UTR3:EXON_MRNA:INTRON	SPC24	ENSG00000161888.11	ENST00000585567.5:ENST00000592540.5:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	23	2	1.70359	2.059995	2.4164	0.0245566	0.011989	0.114841	0.0700473
chr4	56459834	56459933	4848728	0	+	0.414141	(0.39,0.42]	chr4	399473	4	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	52	184	2	1.70908	2.059925	2.41077	0.00135003	6.08125e-6	0.0140557	1.99813e-4
chr22	21788693	21788750	18442644	0	-	0.473684	(0.455,0.49]	chr22	1572531	1	CDS	CDS:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	17	67	2	1.37469	2.0598549999999998	2.74502	0.0259657	7.40026e-5	0.118976	0.0014185
chr3	177022817	177022916	4593455	0	-	0.383838	(0.36,0.39]	chr3	379622	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	34	2	1.86118	2.0595600000000003	2.25794	0.0121414	0.00429221	0.0699297	0.0333617
chr17	81510001	81510099	16707860	0	-	0.377551	(0.36,0.39]	chr17	1377329	7	UTR3	UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	85	313	2	1.62656	2.05944	2.49232	0.00132221	9.80692e-7	0.0144203	3.92504e-5
chr14	55065521	55065621	14298056	0	+	0.54	(0.53,0.59]	chr14	1117553	10	UTR3	UTR3:EXON_MRNA	MAPK1IP1L	ENSG00000168175.15	ENST00000395468.9:ENST00000622254.1	protein_coding	protein_coding	protein_coding	protein_coding	10	55	2	1.49715	2.05898	2.62081	0.0455868	3.14057e-4	0.175638	0.00452711
chr19	15835089	15835185	17246587	0	+	0.458333	(0.455,0.49]	chr19	1422765	4	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000643567.1:ENST00000670862.1:ENST00000645877.1:ENST00000646494.1:ENST00000644962.1:ENST00000655708.1:ENST00000642256.2:ENST00000658824.1:ENST00000659568.1:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1:ENST00000644845.2:ENST00000645221.1:ENST00000645251.1:ENST00000645708.2:ENST00000645821.2:ENST00000647185.1:ENST00000643552.1:ENST00000642894.1:ENST00000643846.1:ENST00000644103.1:ENST00000644730.1:ENST00000646128.1:ENST00000646397.1:ENST00000643818.1:ENST00000664784.1:ENST00000642269.1:ENST00000645156.1:ENST00000589333.3:ENST00000600160.3	lncRNA	lncRNA	lncRNA	lncRNA	10	42	2	2.0008	2.058835	2.11687	0.0129467	0.0028711	0.0724783	0.0246888
chr12	69272677	69272776	12941727	0	+	0.353535	(0.33,0.36]	chr12	1008771	33	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	24	2	1.65713	2.058705	2.46028	0.0528205	0.00381804	0.195536	0.0309081
chr19	3980909	3980979	17430225	0	-	0.657143	(0.59,1]	chr19	1454712	2	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000598182.5:ENST00000598436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	57	497	2	1.84957	2.05865	2.26773	0.00173942	6.36156e-5	0.0179345	0.00124926
chr3	196348553	196348652	4664950	0	-	0.424242	(0.42,0.455]	chr3	385869	10	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.75469	2.05858	2.36247	0.0462889	0.0198622	0.176878	0.0984041
chr4	24537050	24537111	5358794	0	-	0.409836	(0.39,0.42]	chr4	429831	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DHX15	ENSG00000109606.13	ENST00000336812.5:ENST00000508032.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	30	2	1.73522	2.05854	2.38186	0.0216784	0.00601449	0.103158	0.0434483
chr11	58619972	58620071	11955373	0	+	0.363636	(0.36,0.39]	chr11	914993	24	UTR3	UTR3:EXON_MRNA:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	27	2	1.85874	2.0583400000000003	2.25794	0.0415243	0.00429221	0.164804	0.0333617
chr6	31666079	31666143	7116040	0	+	0.71875	(0.59,1]	chr6	545953	1	UTR5	UTR5:EXON_MRNA:INTRON	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000465481.6:ENST00000481269.1:ENST00000475875.2:ENST00000375880.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	122	2	1.56103	2.05774	2.55445	0.0154192	6.69187e-4	0.0833655	0.00820018
chr2	218275574	218275621	3186644	0	-	0.595745	(0.59,1]	chr2	279900	1	CDS	CDS:UTR3:EXON_MRNA	TMBIM1	ENSG00000135926.15	ENST00000258412.8:ENST00000444881.5:ENST00000396809.6:ENST00000465082.5:ENST00000445635.5:ENST00000437694.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	45	2	1.79051	2.057175	2.32384	0.0396851	0.0157639	0.161349	0.0851539
chr17	50382792	50382889	16585121	0	-	0.453608	(0.42,0.455]	chr17	1363112	17	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.95205	2.057095	2.16214	0.0248244	0.00696724	0.113644	0.0474632
chr14	102008177	102008257	14495412	0	+	0.6375	(0.59,1]	chr14	1133081	1	CDS	CDS:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000643684.1:ENST00000645114.2:ENST00000643764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	54	2	2.01575	2.0570399999999998	2.09833	0.0201728	0.0150311	0.0978331	0.0816517
chr13	30463279	30463352	13949079	0	-	0.39726	(0.39,0.42]	chr13	1094866	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8:ENST00000399489.5:ENST00000399494.5:ENST00000326004.4:ENST00000468384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	59	2	1.33865	2.0570199999999996	2.77539	0.0417156	6.04118e-5	0.165497	0.00120998
chr2	74215023	74215121	1891749	0	+	0.326531	(0.29,0.33]	chr2	179209	9	UTR3	UTR3:EXON_MRNA	MTHFD2	ENSG00000065911.13	ENST00000677997.1:ENST00000677170.1:ENST00000678684.1:ENST00000409804.5:ENST00000489041.2:ENST00000678955.1:ENST00000394053.7:ENST00000677377.1:ENST00000679055.1:ENST00000678340.1:ENST00000409601.1:ENST00000678228.1:ENST00000678623.1:ENST00000678731.1:ENST00000677299.1:ENST00000678633.1:ENST00000677558.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	55	2	1.64584	2.05672	2.4676	0.0122524	1.80002e-4	0.0705132	0.00291129
chr2	68180196	68180291	2716500	0	-	0.4	(0.39,0.42]	chr2	241809	15	UTR3	UTR3:EXON_MRNA:INTRON	RP11-474G23.1:PPP3R1	ENSG00000273398.6:ENSG00000221823.11	ENST00000406334.3:ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	1.99911	2.0565499999999997	2.11399	0.0477207	0.014455	0.17993	0.0787564
chr21	37165839	37165936	18115202	0	+	0.412371	(0.39,0.42]	chr21	1536059	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TTC3	ENSG00000182670.13	ENST00000355666.5:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000472398.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	21	2	1.99911	2.0565499999999997	2.11399	0.0477207	0.014455	0.17993	0.0787564
chr6	107908926	107908980	7881949	0	-	0.277778	[0,0.29]	chr6	603410	1	CDS	CDS:EXON_MRNA	SEC63	ENSG00000025796.14	ENST00000369002.9:ENST00000489455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	17	2	1.95226	2.0565	2.16074	0.0282226	0.0222978	0.124386	0.105845
chr12	7813080	7813175	13192338	0	-	0.368421	(0.36,0.39]	chr12	1033373	7	UTR3	UTR3:EXON_MRNA	SLC2A14	ENSG00000173262.12	ENST00000340749.9:ENST00000616981.4:ENST00000542546.5:ENST00000431042.7:ENST00000543909.5	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.72655	2.056095	2.38564	0.0476159	0.033108	0.17993	0.13754
chr20	53568628	53568725	18015824	0	-	0.381443	(0.36,0.39]	chr20	1526869	17	UTR3	UTR3:EXON_MRNA	ZNF217	ENSG00000171940.14	ENST00000371471.7:ENST00000302342.3	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.72655	2.056095	2.38564	0.0476159	0.033108	0.17993	0.13754
chr6	32162567	32162622	7118523	0	+	0.472727	(0.455,0.49]	chr6	546939	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000361568.6:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000493548.5:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	37	2	1.88914	2.05598	2.22282	0.0127583	0.00483628	0.0719798	0.0366328
chr7	130134713	130134812	8529072	0	+	0.343434	(0.33,0.36]	chr7	651128	41	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	21	63	2	1.75005	2.055125	2.3602	0.00351001	5.14602e-4	0.0289177	0.0071931
chr1	11022904	11022988	42046	0	+	0.345238	(0.33,0.36]	chr1	5020	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	28	2	1.66025	2.0550550000000003	2.44986	0.0220685	0.00563343	0.104519	0.0422191
chr3	20168187	20168287	4076327	0	-	0.43	(0.42,0.455]	chr3	341644	66	INTRON	INTRON	SGO1	ENSG00000129810.15	ENST00000306698.6:ENST00000419233.6:ENST00000263753.8:ENST00000425061.5:ENST00000443724.5:ENST00000421451.5:ENST00000452020.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.03532	2.05503	2.07474	0.040947	0.0338882	0.163285	0.139841
chr6	17628949	17629047	7619012	0	-	0.428571	(0.42,0.455]	chr6	580534	4	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.03532	2.05503	2.07474	0.040947	0.0338882	0.163285	0.139841
chr9	126882105	126882204	10468579	0	+	0.434343	(0.42,0.455]	chr9	788451	13	UTR3	UTR3:EXON_MRNA	ZBTB34	ENSG00000177125.5	ENST00000319119.4:ENST00000373452.2	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	2.03532	2.05503	2.07474	0.040947	0.0338882	0.163285	0.139841
chr3	23919798	23919897	3358565	0	+	0.444444	(0.42,0.455]	chr3	294139	4	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	13	57	2	1.63684	2.054875	2.47291	0.0246118	2.48605e-4	0.114882	0.00375438
chr8	38139437	38139529	9291786	0	+	0.423913	(0.42,0.455]	chr8	710654	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ASH2L	ENSG00000129691.16	ENST00000545394.2:ENST00000343823.11:ENST00000517496.5:ENST00000428278.6:ENST00000521652.5:ENST00000521808.5:ENST00000520079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	38	2	1.5897	2.05479	2.51988	0.0208528	0.00300574	0.101022	0.0267032
chr1	32668971	32669051	130293	0	+	0.5125	(0.49,0.53]	chr1	16088	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000527118.5:ENST00000373493.10:ENST00000524393.5:ENST00000492348.6:ENST00000526193.5:ENST00000373485.5:ENST00000458695.6:ENST00000475321.5:ENST00000531983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	53	2	2.02795	2.054595	2.08124	0.0110299	0.00165066	0.0652374	0.0163614
chr7	44831883	44831977	8800340	0	-	0.351064	(0.33,0.36]	chr7	671366	14	INTRON	INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	2.00765	2.05459	2.10153	0.0287001	0.00871844	0.128757	0.0560911
chr19	14562495	14562575	17243433	0	+	0.4625	(0.455,0.49]	chr19	1422032	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TECR	ENSG00000099797.15	ENST00000600076.5:ENST00000598298.5:ENST00000642961.1:ENST00000215567.10:ENST00000600083.5:ENST00000598987.5:ENST00000601652.5:ENST00000593637.5:ENST00000594807.5:ENST00000598333.5:ENST00000596953.5:ENST00000597607.5:ENST00000596164.5:ENST00000598715.5:ENST00000598918.5:ENST00000594545.5:ENST00000601461.1:ENST00000596073.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	26	2	1.92777	2.054525	2.18128	0.0286531	0.0111696	0.128685	0.0665375
chr4	139344262	139344339	5127999	0	+	0.350649	(0.33,0.36]	chr4	415161	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000480277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	17	2	1.82394	2.0542949999999998	2.28465	0.0494504	0.0188404	0.18557	0.0958835
chr7	12333516	12333568	8682978	0	-	0.384615	(0.36,0.39]	chr7	663906	2	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000485526.1:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	22	2	2.02118	2.053945	2.08671	0.0251625	0.01635	0.117055	0.0867615
chr5	72207303	72207402	6027870	0	+	0.242424	[0,0.29]	chr5	472574	22	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	5	15	2	1.95226	2.05357	2.15488	0.0436536	0.0282226	0.170594	0.124386
chrX	136512179	136512262	18870367	0	+	0.26506	[0,0.29]	chrX	1608477	3	UTR3	UTR3:EXON_MRNA	HTATSF1	ENSG00000102241.12	ENST00000535601.5:ENST00000218364.5	protein_coding	protein_coding	protein_coding	protein_coding	5	15	2	1.95226	2.05357	2.15488	0.0436536	0.0282226	0.170594	0.124386
chr8	47915327	47915418	9816961	0	-	0.32967	(0.29,0.33]	chr8	742815	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	14	39	2	1.99381	2.053475	2.11314	0.00468649	0.00327704	0.0362871	0.0274403
chr20	49072285	49072369	17811614	0	+	0.428571	(0.42,0.455]	chr20	1506514	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.86513	2.05335	2.24157	0.0357107	0.0087798	0.147298	0.0562439
chr11	73677307	73677405	12457782	0	-	0.367347	(0.36,0.39]	chr11	968371	18	UTR3	UTR3:EXON_MRNA	RAB6A	ENSG00000175582.20	ENST00000310653.10:ENST00000336083.8:ENST00000541973.5	protein_coding	protein_coding	protein_coding	protein_coding	13	41	2	1.57818	2.05282	2.52746	0.0183587	0.00115604	0.0928041	0.0125677
chr19	10288004	10288094	17224674	0	+	0.577778	(0.53,0.59]	chr19	1418521	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ICAM4	ENSG00000105371.10	ENST00000380770.5:ENST00000340992.4:ENST00000393717.2	protein_coding	protein_coding	protein_coding	protein_coding	6	32	2	1.88327	2.05267	2.22207	0.0298124	0.00910511	0.129773	0.0576716
chr16	56447807	56447907	15959841	0	-	0.47	(0.455,0.49]	chr16	1280004	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	NUDT21:RP11-413H22.3	ENSG00000167005.14:ENSG00000288725.1	ENST00000300291.10:ENST00000684388.1:ENST00000566340.5:ENST00000568822.1:ENST00000567110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	39	2	1.80094	2.05255	2.30416	0.0265942	0.00182199	0.120205	0.0176039
chr4	56489387	56489483	4849010	0	+	0.395833	(0.39,0.42]	chr4	399541	1	CDS	CDS:EXON_MRNA	SRP72	ENSG00000174780.17	ENST00000642900.1:ENST00000510663.6:ENST00000505314.2:ENST00000646579.1:ENST00000647432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	33	2	1.72312	2.05249	2.38186	0.0164636	0.00601449	0.0873379	0.0434483
chr5	36985153	36985248	5935819	0	+	0.336842	(0.33,0.36]	chr5	465428	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1:ENST00000504430.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	19	2	1.82006	2.052355	2.28465	0.0323353	0.0188404	0.135977	0.0958835
chr1	32771061	32771160	130783	0	+	0.575758	(0.53,0.59]	chr1	16158	13	CDS	CDS:EXON_MRNA:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	12	58	2	1.83149	2.052345	2.2732	0.00570336	0.00369236	0.0415928	0.030936
chr10	68747469	68747566	11091446	0	+	0.494845	(0.49,0.53]	chr10	842981	2	CDS	CDS:UTR3:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	42	2	1.80005	2.052225	2.3044	0.00877398	0.00696379	0.0562439	0.0474632
chr2	106698579	106698676	2825366	0	-	0.474227	(0.455,0.49]	chr2	252231	14	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	16	67	2	1.8078	2.052105	2.29641	0.00913341	3.43308e-4	0.0579028	0.0048374
chr10	68973544	68973604	11093306	0	+	0.6	(0.59,1]	chr10	843270	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	4	34	2	1.67735	2.05187	2.42639	0.0534288	0.0409084	0.184995	0.163285
chr6	67881392	67881485	7784073	0	-	0.430108	(0.42,0.455]	chr6	596219	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1	lncRNA	lncRNA	lncRNA	lncRNA	207	774	2	1.72922	2.05159	2.37396	2.48899e-4	8.33983e-7	0.00375866	3.80591e-5
chr14	63374920	63375019	14666179	0	-	0.333333	(0.33,0.36]	chr14	1148392	37	UTR3	UTR3:EXON_MRNA	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	1.81447	2.051195	2.28792	0.0239159	0.0171093	0.112531	0.0903794
chr16	30070280	30070348	15628440	0	+	0.661765	(0.59,1]	chr16	1239799	2	UTR3	UTR3:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	67	569	2	1.91488	2.051125	2.18737	9.94187e-4	9.12003e-5	0.0118266	0.00168243
chr1	37976883	37976953	950168	0	-	0.4	(0.39,0.42]	chr1	100087	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SF3A3	ENSG00000183431.12	ENST00000373019.5:ENST00000460925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	31	2	1.92026	2.050905	2.18155	0.0283931	0.00726512	0.127654	0.0487474
chr1	154212540	154212624	1302865	0	-	0.511905	(0.49,0.53]	chr1	131203	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	C1orf43	ENSG00000143612.21	ENST00000648267.1:ENST00000470180.2:ENST00000350592.7:ENST00000362076.8:ENST00000368521.10:ENST00000640799.1:ENST00000368519.5:ENST00000493814.1:ENST00000368518.5:ENST00000368516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	41	2	1.56396	2.05073	2.5375	0.0388812	0.00104367	0.158355	0.0115928
chr19	5690316	5690411	17210628	0	+	0.631579	(0.59,1]	chr19	1415418	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL36	ENSG00000130255.13	ENST00000579649.5:ENST00000582380.6:ENST00000577222.5:ENST00000347512.8:ENST00000582463.5:ENST00000579446.1:ENST00000590786.5:ENST00000394580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	62	2	1.63662	2.05073	2.46484	0.0410169	0.00383661	0.163285	0.0310411
chrM	868	965	19377147	0	+	0.546392	(0.53,0.59]	chrM	1649798	4	EXON_SMALL	EXON_SMALL	MT-RNR1	ENSG00000211459.2	ENST00000389680.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	5276	24870	2	2.01985	2.0496999999999996	2.07955	1.63579e-5	9.76954e-6	4.1418e-4	2.98194e-4
chr11	61416270	61416353	12404657	0	-	0.578313	(0.53,0.59]	chr11	960376	3	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8:ENST00000448745.5:ENST00000537641.5:ENST00000477890.6:ENST00000544669.5:ENST00000539952.5:ENST00000535222.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	38	2	1.76849	2.049665	2.33084	0.0420665	0.00283321	0.158792	0.0252865
chr17	40388822	40388921	16538729	0	-	0.40404	(0.39,0.42]	chr17	1354547	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000577541.1	protein_coding	protein_coding	protein_coding	protein_coding	27	95	2	1.81818	2.048875	2.27957	0.00154069	2.42276e-4	0.0156246	0.00398684
chr17	7240571	7240665	16429073	0	-	0.478723	(0.455,0.49]	chr17	1339315	7	UTR3	UTR3:EXON_MRNA	GABARAP:CTD-2545G14.7	ENSG00000170296.10:ENSG00000262526.2	ENST00000302386.10:ENST00000577035.5:ENST00000570760.2:ENST00000570856.1:ENST00000571129.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	114	2	1.3639	2.04858	2.73326	0.0241232	4.26031e-6	0.113469	1.35677e-4
chr10	73074807	73074883	11568920	0	-	0.355263	(0.33,0.36]	chr10	880517	1	CDS_START	CDS_START:CDS:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	17	49	2	1.64726	2.04856	2.44986	0.00563343	0.00523334	0.0422191	0.0386531
chr9	130783253	130783353	10493255	0	+	0.39	(0.36,0.39]	chr9	792876	684	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	2.03744	2.04855	2.05966	0.0366015	0.00563874	0.145024	0.0422191
chr1	44753131	44753192	173910	0	+	0.590164	(0.59,1]	chr1	22334	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5:ENST00000372217.5:ENST00000480574.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	1.77181	2.04818	2.32455	0.0520547	0.0267363	0.193787	0.118611
chr2	216205293	216205385	2380718	0	+	0.402174	(0.39,0.42]	chr2	213872	2	UTR3	UTR3:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5:ENST00000485763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	23	2	1.75252	2.048005	2.34349	0.0297286	0.0169272	0.130016	0.0890655
chr7	127371517	127371616	9057495	0	-	0.414141	(0.39,0.42]	chr7	691091	16	UTR3	UTR3:EXON_MRNA:INTRON	ZNF800	ENSG00000048405.10	ENST00000485577.1:ENST00000265827.8:ENST00000393313.5:ENST00000393312.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	23	2	1.75252	2.048005	2.34349	0.0297286	0.0169272	0.130016	0.0890655
chr22	39521353	39521428	18370793	0	+	0.493333	(0.49,0.53]	chr22	1563262	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATF4	ENSG00000128272.17	ENST00000404241.6:ENST00000674920.3:ENST00000679776.1:ENST00000337304.2:ENST00000675582.2:ENST00000396680.3:ENST00000676346.2:ENST00000680446.1:ENST00000674568.2:ENST00000680748.1:ENST00000674835.2:ENST00000676430.1	protein_coding	protein_coding	protein_coding	protein_coding	10	48	2	1.46766	2.0479950000000002	2.62833	0.0523669	3.00556e-4	0.194793	0.00438757
chr16	2767472	2767571	15494950	0	+	0.59596	(0.59,1]	chr16	1227802	61	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	79	2	1.91973	2.04781	2.17589	0.0167506	0.00389949	0.0883702	0.0313218
chr16	30069922	30070016	15628436	0	+	0.638298	(0.59,1]	chr16	1239797	2	CDS	CDS:UTR3:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	136	1127	2	1.99039	2.047775	2.10516	2.93912e-4	9.85109e-5	0.00465536	0.00178316
chr8	26412060	26412157	9238671	0	+	0.257732	[0,0.29]	chr8	707583	18	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	1.81505	2.04773	2.28041	0.0409713	0.00240042	0.163285	0.0217482
chr5	151799898	151799970	6299716	0	+	0.458333	(0.455,0.49]	chr5	491935	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000678369.1:ENST00000678564.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678194.1:ENST00000679207.1:ENST00000679193.1:ENST00000678825.1:ENST00000677854.1:ENST00000678657.1:ENST00000677241.1:ENST00000677608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	38	2	1.90433	2.047625	2.19092	0.0185466	0.00318608	0.0932453	0.0267172
chr22	21628517	21628598	18441862	0	-	0.703704	(0.59,1]	chr22	1572449	1	CDS	CDS:UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	115	2	1.47301	2.047425	2.62184	0.0192532	8.93288e-4	0.0943643	0.010245
chr16	51646410	51646500	15663189	0	+	0.533333	(0.53,0.59]	chr16	1244824	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000565308.2:ENST00000562726.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	40	2	1.71269	2.0473	2.38191	0.0222391	0.00477439	0.104593	0.0368489
chr1	39563586	39563686	952947	0	-	0.58	(0.53,0.59]	chr1	100535	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000492468.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1:ENST00000678894.1:ENST00000421687.6:ENST00000484555.1:ENST00000525045.5:ENST00000477556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	44	2	1.78471	2.047295	2.30988	0.0122294	0.00643853	0.0703354	0.0452349
chr15	41380474	41380570	14886252	0	+	0.447917	(0.42,0.455]	chr15	1169383	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	37	2	1.97671	2.0472799999999998	2.11785	0.0154862	0.00554508	0.0836691	0.0405292
chr3	100363526	100363623	4325484	0	-	0.402062	(0.39,0.42]	chr3	360552	2	UTR3	UTR3:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.79377	2.04716	2.30055	0.0299302	0.0070645	0.129773	0.0477419
chr9	127447876	127447932	10859972	0	-	0.535714	(0.53,0.59]	chr9	822653	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	117	2	1.64068	2.04706	2.45344	0.0108399	4.22153e-5	0.0643837	8.96692e-4
chr16	85673232	85673331	15798085	0	+	0.40404	(0.39,0.42]	chr16	1257094	8	UTR3	UTR3:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	34	2	1.96364	2.046985	2.13033	0.00890556	0.00865856	0.0565003	0.0557159
chr4	70909145	70909245	4878178	0	+	0.4	(0.39,0.42]	chr4	401866	62	INTRON	INTRON	MOB1B	ENSG00000173542.9	ENST00000502869.5:ENST00000509041.5:ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	34	2	1.96364	2.046985	2.13033	0.00890556	0.00865856	0.0565003	0.0557159
chr11	46778225	46778313	12383850	0	-	0.363636	(0.36,0.39]	chr11	956104	2	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	2.02118	2.0468200000000003	2.07246	0.0251625	0.00252144	0.117055	0.0226777
chr11	43343739	43343837	11920020	0	+	0.367347	(0.36,0.39]	chr11	910889	12	UTR3	UTR3:EXON_MRNA	API5	ENSG00000166181.13	ENST00000531273.6:ENST00000378852.7	protein_coding	protein_coding	protein_coding	protein_coding	9	30	2	1.97546	2.04678	2.1181	0.0239316	0.00385216	0.109927	0.032128
chr14	90404914	90405012	14455581	0	+	0.295918	(0.29,0.33]	chr14	1128586	3	UTR3	UTR3:EXON_MRNA	CALM1	ENSG00000198668.13	ENST00000356978.9:ENST00000447653.8:ENST00000626705.2:ENST00000553630.1:ENST00000553542.5:ENST00000544280.6:ENST00000663135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	42	2	1.80634	2.046495	2.28665	0.00574816	0.0022585	0.0417823	0.0214524
chr3	47586640	47586738	4161747	0	-	0.316327	(0.29,0.33]	chr3	348302	15	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	22	67	2	1.52719	2.04645	2.56571	0.0176255	4.09673e-5	0.0918323	8.78743e-4
chr21	33578016	33578113	18220941	0	-	0.329897	(0.29,0.33]	chr21	1546463	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DONSON	ENSG00000159147.18	ENST00000439593.1:ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5:ENST00000417871.5:ENST00000460557.1:ENST00000444517.5:ENST00000442660.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	22	2	1.99415	2.046375	2.0986	0.0333928	0.00919301	0.140128	0.0581197
chr6	108212055	108212148	7883756	0	-	0.387097	(0.36,0.39]	chr6	603535	10	UTR3	UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6:ENST00000349379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	38	2	1.91184	2.046065	2.18029	0.0077769	0.00554415	0.0517139	0.0405292
chr15	52938320	52938419	15289457	0	-	0.444444	(0.42,0.455]	chr15	1206821	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P22	ENSG00000259612.1	ENST00000559385.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	17	70	2	1.60466	2.0459199999999997	2.48718	0.0141514	1.45813e-4	0.0774533	0.0024468
chr15	71164669	71164769	15364106	0	-	0.36	(0.33,0.36]	chr15	1213704	165	INTRON	INTRON	THSD4-AS1	ENSG00000259964.7	ENST00000561571.5	lncRNA	lncRNA	lncRNA	lncRNA	13	38	2	1.47889	2.0458600000000002	2.61283	0.0293763	7.60348e-4	0.129773	0.00908558
chr3	150543060	150543157	4517207	0	-	0.360825	(0.36,0.39]	chr3	374942	12	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	14	52	2	1.76426	2.045495	2.32673	0.0178361	4.13751e-4	0.0918323	0.00562243
chr22	38483836	38483936	18509597	0	-	0.37	(0.36,0.39]	chr22	1579957	5	UTR3	UTR3:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8	protein_coding	protein_coding	protein_coding	protein_coding	12	45	2	1.78505	2.045455	2.30586	0.0228572	7.0243e-4	0.108215	0.00848325
chr3	51969150	51969241	4181186	0	-	0.417582	(0.39,0.42]	chr3	352425	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	PCBP4:RP11-155D18.12:ABHD14B	ENSG00000090097.22:ENSG00000272762.5:ENSG00000114779.20	ENST00000489595.6:ENST00000488257.2:ENST00000483233.5:ENST00000315877.14:ENST00000361143.10:ENST00000487005.1:ENST00000395008.6:ENST00000461108.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	32	2	1.88047	2.04538	2.21029	0.0102027	0.0100911	0.062872	0.0625052
chr4	17803590	17803680	5337596	0	-	0.444444	(0.42,0.455]	chr4	429242	1	CDS	CDS:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	2.03532	2.045235	2.05515	0.040947	0.017518	0.163285	0.0924156
chr17	82079524	82079608	16710667	0	-	0.678571	(0.59,1]	chr17	1378131	3	CDS	CDS:UTR3:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000584610.2:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	92	2	1.77772	2.0445849999999997	2.31145	0.0110472	0.00362809	0.0652709	0.029797
chr2	112663325	112663425	2001924	0	+	0.37	(0.36,0.39]	chr2	190058	4	UTR3	UTR3:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8:ENST00000490674.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	56	2	1.86258	2.044565	2.22655	0.00273851	0.00169792	0.0246786	0.0166327
chr19	16874358	16874458	17251000	0	+	0.48	(0.455,0.49]	chr19	1423589	18	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.95898	2.04446	2.12994	0.047107	0.0304832	0.172269	0.130204
chr7	4763062	4763162	8109589	0	+	0.46	(0.455,0.49]	chr7	619657	7	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.95898	2.04446	2.12994	0.047107	0.0304832	0.172269	0.130204
chr10	46005181	46005275	11470915	0	-	0.37234	(0.36,0.39]	chr10	874825	2	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	27	99	2	1.59715	2.0442850000000004	2.49142	0.0090709	2.20272e-5	0.0575327	5.2532e-4
chr1	186359798	186359897	1412229	0	-	0.424242	(0.42,0.455]	chr1	142967	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000474852.1:ENST00000613151.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	36	2	1.85887	2.0441000000000003	2.22933	0.0102262	0.00931874	0.062872	0.0588091
chr17	1344662	1344759	16398372	0	-	0.525773	(0.49,0.53]	chr17	1334230	5	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	39	171	2	1.73748	2.044095	2.35071	0.00219256	1.96067e-5	0.02095	4.77917e-4
chr3	184173416	184173515	3948138	0	+	0.363636	(0.36,0.39]	chr3	331990	28	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	2.00093	2.04382	2.08671	0.01635	0.00996106	0.0867615	0.0621728
chr17	1683532	1683616	16401652	0	-	0.488095	(0.455,0.49]	chr17	1334982	1	CDS	CDS:EXON_MRNA	PRPF8	ENSG00000174231.17	ENST00000304992.11:ENST00000572621.5:ENST00000577001.1:ENST00000571346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	31	2	1.79605	2.0438	2.29155	0.0427708	0.00354718	0.168094	0.0291792
chr5	77776257	77776339	6650906	0	-	0.707317	(0.59,1]	chr5	513881	1	UTR5	UTR5:EXON_MRNA:INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.58352	2.04337	2.50322	0.0477456	0.00863444	0.179958	0.0556009
chr22	30969718	30969818	18344779	0	+	0.6	(0.59,1]	chr22	1559156	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	TUG1	ENSG00000253352.10	ENST00000646021.1:ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000602971.2:ENST00000519077.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	55	2	1.74555	2.0433149999999998	2.34108	0.0444308	0.00648714	0.165174	0.0454205
chr8	38146054	38146147	9794959	0	-	0.55914	(0.53,0.59]	chr8	740491	2	CDS	CDS:EXON_MRNA	STAR	ENSG00000147465.12	ENST00000276449.9:ENST00000520114.1:ENST00000522050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	36	2	1.94437	2.0432099999999997	2.14205	0.0143432	0.0123179	0.0783202	0.070688
chr17	78224052	78224151	16368065	0	+	0.383838	(0.36,0.39]	chr17	1329653	5	UTR3	UTR3:EXON_MRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6	protein_coding	protein_coding	protein_coding	protein_coding	20	68	2	1.98553	2.043205	2.10088	0.00275785	6.7155e-4	0.0247437	0.00822827
chr1	27206929	27207025	112123	0	+	0.447917	(0.42,0.455]	chr1	13534	1	EXON_PSEUDO	EXON_PSEUDO	NPM1P39	ENSG00000225159.1	ENST00000449818.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	24	2	1.7601	2.043195	2.32629	0.0312663	0.0153564	0.132093	0.0832114
chr5	134925542	134925641	6232573	0	+	0.494949	(0.49,0.53]	chr5	485527	10	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	35	2	1.95113	2.04307	2.13501	0.0287874	0.00618788	0.128869	0.0440445
chr12	65240997	65241087	12928162	0	+	0.433333	(0.42,0.455]	chr12	1007637	2	CDS	CDS:EXON_MRNA	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000542032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	19	2	1.7601	2.043	2.3259	0.0484606	0.0312663	0.175495	0.132093
chr8	102858081	102858150	9984735	0	-	0.492754	(0.49,0.53]	chr8	753502	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8:ENST00000521536.6:ENST00000520402.5:ENST00000518353.5:ENST00000517581.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	28	2	1.70501	2.04299	2.38097	0.0425419	0.017267	0.167547	0.091184
chr18	8918442	8918539	16750743	0	+	0.412371	(0.39,0.42]	chr18	1381318	18	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	15	54	2	1.83206	2.04292	2.25378	0.00778482	7.48045e-4	0.0509384	0.00934936
chr21	14510309	14510385	18164051	0	-	0.513158	(0.49,0.53]	chr21	1542452	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	1.78308	2.04286	2.30264	0.0425234	0.0165402	0.167547	0.087611
chr17	48863347	48863447	16255732	0	+	0.51	(0.49,0.53]	chr17	1317495	4	UTR3	UTR3:EXON_MRNA	CALCOCO2	ENSG00000136436.15	ENST00000448105.6:ENST00000258947.8	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.99044	2.04275	2.09506	0.0435903	0.00820526	0.170594	0.05339
chr11	35807378	35807477	11910470	0	+	0.535354	(0.53,0.59]	chr11	910190	11	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	18	80	2	1.25591	2.042745	2.82958	0.0313207	8.75863e-5	0.132315	0.00162799
chr2	74153807	74153906	2740208	0	-	0.474747	(0.455,0.49]	chr2	243880	14	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	24	95	2	1.70123	2.0424	2.38357	0.00452058	1.05307e-4	0.0350935	0.00188448
chr11	47468121	47468220	12386789	0	-	0.575758	(0.53,0.59]	chr11	956932	23	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	13	64	2	1.98961	2.042255	2.0949	0.00477326	0.00263894	0.0368489	0.0231864
chr4	39779226	39779325	4802019	0	+	0.282828	[0,0.29]	chr4	396197	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10:ENST00000438068.6:ENST00000445950.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	19	2	2.0001	2.0422200000000004	2.08434	0.0227161	0.0181581	0.107633	0.0945306
chr14	102726703	102726802	14500034	0	+	0.646465	(0.59,1]	chr14	1133640	3	UTR3	UTR3:EXON_MRNA	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.03921	2.042205	2.0452	0.0371471	0.0179494	0.151849	0.0939469
chr1	167541605	167541703	1347832	0	-	0.27551	[0,0.29]	chr1	137992	7	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	29	73	2	1.61341	2.04218	2.47095	0.00704497	6.05701e-5	0.0478044	0.00121287
chr14	96881225	96881296	14478012	0	+	0.267606	[0,0.29]	chr14	1131062	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	VRK1	ENSG00000100749.9	ENST00000553683.2:ENST00000680538.1:ENST00000681195.1:ENST00000681524.1:ENST00000681598.1:ENST00000679727.1:ENST00000679758.1:ENST00000679977.1:ENST00000680387.1:ENST00000680335.1:ENST00000680683.1:ENST00000681474.1:ENST00000216639.8:ENST00000681363.1:ENST00000681538.1:ENST00000680922.1:ENST00000679903.1:ENST00000681101.1:ENST00000679941.1:ENST00000680849.1:ENST00000679770.1:ENST00000681493.1:ENST00000681778.1:ENST00000680993.1:ENST00000681355.1:ENST00000681695.1:ENST00000681344.1:ENST00000680007.1:ENST00000679918.1:ENST00000679816.1:ENST00000680756.1:ENST00000681249.1:ENST00000680526.1:ENST00000679365.1:ENST00000680851.1:ENST00000679506.1:ENST00000679650.1:ENST00000679462.1:ENST00000681061.1:ENST00000681677.1:ENST00000679843.1:ENST00000555067.2:ENST00000555402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	27	2	2.03267	2.041985	2.0513	0.0131453	0.0070139	0.0733537	0.0474984
chr18	59328218	59328317	17142315	0	-	0.363636	(0.36,0.39]	chr18	1407602	5	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	14	56	2	1.85874	2.041935	2.22513	0.0415243	3.06811e-4	0.164804	0.00443674
chr5	139308146	139308236	6248869	0	+	0.477778	(0.455,0.49]	chr5	486959	8	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	79	2	1.72512	2.0418000000000003	2.35848	0.00550105	2.31315e-4	0.0414592	0.00354233
chr1	43363029	43363129	164249	0	+	0.64	(0.59,1]	chr1	20876	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	CDC20	ENSG00000117399.14	ENST00000310955.11:ENST00000372462.1:ENST00000482046.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	52	2	1.65693	2.0416600000000003	2.42639	0.0409084	0.0211812	0.163285	0.102436
chr11	63758591	63758691	11976854	0	+	0.37	(0.36,0.39]	chr11	918385	3	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding	23	68	2	1.51042	2.0416	2.57278	0.00686233	5.85449e-4	0.047152	0.00793746
chr3	195790603	195790702	4661173	0	-	0.444444	(0.42,0.455]	chr3	385270	120	CDS	CDS:EXON_MRNA:INTRON	MUC4	ENSG00000145113.22	ENST00000478156.5:ENST00000349607.8:ENST00000346145.8:ENST00000463781.8:ENST00000479406.5:ENST00000466475.5:ENST00000475231.5:ENST00000477086.5:ENST00000480843.5:ENST00000470451.5:ENST00000462323.5:ENST00000477756.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	17	2	1.72071	2.0415900000000002	2.36247	0.0499984	0.0462889	0.179758	0.176878
chr5	132294911	132295009	6222490	0	+	0.683673	(0.59,1]	chr5	484229	3	CDS	CDS:EXON_MRNA	SLC22A4	ENSG00000197208.6	ENST00000200652.4	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.96394	2.0414399999999997	2.11894	0.0453144	0.0293157	0.174798	0.128478
chr3	100400849	100400949	4325877	0	-	0.75	(0.59,1]	chr3	360620	1	CDS_START	CDS_START:CDS:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	2.03921	2.041415	2.04362	0.0371471	0.036186	0.151849	0.145024
chr17	64500098	64500174	16639709	0	-	0.407895	(0.39,0.42]	chr17	1368475	2	CDS	CDS:UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5:ENST00000578758.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	57	2	1.26453	2.04107	2.81761	0.0548372	2.76946e-5	0.189511	7.02276e-4
chr14	23127076	23127176	14529514	0	-	0.57	(0.53,0.59]	chr14	1138639	19	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC7A8	ENSG00000092068.20	ENST00000316902.12:ENST00000339733.9:ENST00000422941.6:ENST00000397310.6:ENST00000469263.5:ENST00000453702.5:ENST00000529705.6:ENST00000528860.5:ENST00000621729.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	49	2	1.78041	2.04097	2.30153	0.0407112	0.00107248	0.163285	0.0118238
chr5	37289720	37289819	6539920	0	-	0.292929	(0.29,0.33]	chr5	506493	17	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	1.90299	2.04077	2.17855	0.0183673	0.0126076	0.0928041	0.0719957
chr2	54972476	54972573	2666098	0	-	0.402062	(0.39,0.42]	chr2	238467	4	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5	protein_coding	protein_coding	protein_coding	protein_coding	63	248	2	1.55123	2.040765	2.5303	0.00284346	1.51597e-6	0.0253748	5.67784e-5
chr3	194404442	194404540	4654484	0	-	0.408163	(0.39,0.42]	chr3	384345	19	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	20	2	1.89968	2.040615	2.18155	0.0298458	0.0283931	0.130016	0.127654
chr6	67884674	67884774	7784107	0	-	0.46	(0.455,0.49]	chr6	596226	4	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	49	183	2	1.84155	2.040415	2.23928	3.89723e-4	8.35115e-5	0.00536466	0.00171787
chr19	1257862	1257961	17192156	0	+	0.383838	(0.36,0.39]	chr19	1411881	7	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1:ENST00000591446.6	protein_coding	protein_coding	protein_coding	protein_coding	15	46	2	1.22474	2.04029	2.85584	0.0514	1.78887e-4	0.192748	0.0028962
chr6	30705602	30705701	7659053	0	-	0.555556	(0.53,0.59]	chr6	584223	21	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000417033.1:ENST00000492462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	48	2	1.70379	2.04021	2.37663	0.0330081	0.00121282	0.138711	0.012983
chr17	48622414	48622511	16578567	0	-	0.525773	(0.49,0.53]	chr17	1361937	14	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	141	2	1.93579	2.04019	2.14459	0.00142756	1.03585e-4	0.0153471	0.0018571
chr3	23920493	23920592	3358572	0	+	0.414141	(0.39,0.42]	chr3	294139	11	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	18	66	2	1.17495	2.040075	2.9052	0.0522355	2.43771e-5	0.19442	5.71478e-4
chr22	41877941	41878032	18383649	0	+	0.494505	(0.49,0.53]	chr22	1565023	1	CDS	CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	64	2	1.69045	2.0399	2.38935	0.00488689	0.00399133	0.0376157	0.0319162
chr10	60784704	60784782	11063587	0	+	0.384615	(0.36,0.39]	chr10	841933	1	CDS	CDS:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	59	2	1.82188	2.039825	2.25777	0.0039992	8.23941e-4	0.0319775	0.0102141
chr12	48043866	48043963	13319058	0	-	0.391753	(0.39,0.42]	chr12	1044594	11	UTR3	UTR3:EXON_MRNA	SENP1	ENSG00000079387.14	ENST00000549518.6:ENST00000552189.5:ENST00000448372.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	39	2	1.97465	2.03945	2.10425	0.00810106	0.00476181	0.0528637	0.036813
chr17	68037132	68037207	16333746	0	+	0.453333	(0.42,0.455]	chr17	1325106	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	KPNA2	ENSG00000182481.10	ENST00000676857.1:ENST00000676594.1:ENST00000677827.1:ENST00000676622.1:ENST00000678054.1:ENST00000583269.5:ENST00000678388.1:ENST00000677918.1:ENST00000676902.1:ENST00000677419.1:ENST00000679346.1:ENST00000677223.1:ENST00000677695.1:ENST00000679078.1:ENST00000330459.8:ENST00000584026.6:ENST00000537025.6:ENST00000677086.1:ENST00000579754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	65	2	1.722	2.039395	2.35679	0.0179091	2.3361e-4	0.0918323	0.00355764
chr3	47124010	47124108	4159645	0	-	0.561224	(0.53,0.59]	chr3	347925	39	CDS	CDS:EXON_MRNA	SETD2	ENSG00000181555.21	ENST00000409792.4:ENST00000330022.11:ENST00000412450.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	51	2	1.79365	2.03937	2.28509	0.0165609	0.0019345	0.087473	0.0184806
chr21	33552811	33552910	18101185	0	+	0.535354	(0.53,0.59]	chr21	1534527	22	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	32	2	1.76849	2.039185	2.30988	0.0420665	0.00643853	0.158792	0.0452349
chr1	11975354	11975445	45512	0	+	0.56044	(0.53,0.59]	chr1	5813	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PLOD1	ENSG00000083444.17	ENST00000196061.5:ENST00000491536.5:ENST00000481933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	32	2	1.78041	2.0391500000000002	2.29789	0.0407112	0.00674768	0.163285	0.0468196
chr1	19168026	19168105	876631	0	-	0.531646	(0.53,0.59]	chr1	90281	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000417040.1:ENST00000419533.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	32	2	1.78041	2.0391500000000002	2.29789	0.0407112	0.00674768	0.163285	0.0468196
chr9	130887077	130887177	10494302	0	+	0.64	(0.59,1]	chr9	792936	15	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.77181	2.03902	2.30623	0.0267363	0.0170607	0.118611	0.0896731
chr2	187464712	187464808	3070146	0	-	0.28125	[0,0.29]	chr2	271827	6	UTR3	UTR3:EXON_MRNA	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5	protein_coding	protein_coding	protein_coding	protein_coding	13	34	2	1.9669	2.039015	2.11113	0.00850217	0.00342811	0.0550147	0.0283582
chrM	1940	2037	19377158	0	+	0.463918	(0.455,0.49]	chrM	1649798	15	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	3967	14971	2	1.85105	2.038995	2.22694	4.75339e-5	1.26256e-6	9.8654e-4	5.38194e-5
chr10	75231080	75231172	11126614	0	+	0.326087	(0.29,0.33]	chr10	846677	2	UTR3	UTR3:EXON_MRNA	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000332211.10:ENST00000313132.8:ENST00000460044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	47	2	1.81695	2.0388800000000002	2.26081	0.0105563	6.63153e-4	0.0637867	0.00818257
chr1	114705960	114706060	1239465	0	-	0.36	(0.33,0.36]	chr1	121309	16	UTR3	UTR3:EXON_MRNA	NRAS	ENSG00000213281.5	ENST00000369535.5	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	1.81451	2.03871	2.26291	0.0120734	0.00241279	0.0695634	0.0218094
chr10	63209148	63209235	11531832	0	-	0.494253	(0.49,0.53]	chr10	878543	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	JMJD1C	ENSG00000171988.19	ENST00000639129.1:ENST00000399262.7:ENST00000402544.5:ENST00000542921.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	18	2	1.69633	2.03865	2.38097	0.0531914	0.0425419	0.184818	0.167547
chr11	117152447	117152528	12154182	0	+	0.493827	(0.49,0.53]	chr11	936163	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000527958.6:ENST00000304808.10:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1:ENST00000533206.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	18	2	1.69633	2.03865	2.38097	0.0531914	0.0425419	0.184818	0.167547
chr17	42311196	42311289	16228142	0	+	0.516129	(0.49,0.53]	chr17	1312855	6	UTR3	UTR3:EXON_MRNA	STAT5A	ENSG00000126561.18	ENST00000345506.8:ENST00000677893.1:ENST00000676631.1:ENST00000590726.7:ENST00000678903.1:ENST00000590949.6:ENST00000676585.1:ENST00000588868.5:ENST00000677301.1:ENST00000587646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	1.69633	2.03865	2.38097	0.0531914	0.0425419	0.184818	0.167547
chr2	27384672	27384755	2570460	0	-	0.506024	(0.49,0.53]	chr2	231563	1	CDS	CDS:EXON_MRNA	PPM1G	ENSG00000115241.11	ENST00000472077.1:ENST00000344034.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	18	2	1.69633	2.03865	2.38097	0.0531914	0.0425419	0.184818	0.167547
chr1	629106	629206	823319	0	-	0.43	(0.42,0.455]	chr1	81474	1	SS3_PROX	SS3_PROX:INTRON	RP11-206L10.17	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	24	2	1.63927	2.0383	2.43733	0.0455517	0.0103896	0.175554	0.0640167
chr3	42784777	42784876	4142179	0	-	0.40404	(0.39,0.42]	chr3	346309	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP4-613B23.5:HIGD1A	ENSG00000280571.2:ENSG00000181061.14	ENST00000648550.1:ENST00000431549.4:ENST00000321331.12:ENST00000418900.6:ENST00000470543.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	45	2	2.03292	2.037645	2.04237	0.00788976	0.00286705	0.0522564	0.0246558
chr3	38254686	38254785	3420133	0	+	0.373737	(0.36,0.39]	chr3	297237	19	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	11	39	2	1.66035	2.036675	2.413	0.026191	0.00106686	0.119224	0.0118238
chr6	159681000	159681099	8048215	0	-	0.343434	(0.33,0.36]	chr6	615183	121	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	34	2	2.01701	2.03653	2.05605	0.00697043	0.0063694	0.0474694	0.0449937
chr1	54031751	54031850	1027171	0	-	0.393939	(0.39,0.42]	chr1	106598	52	UTR3	UTR3:EXON_MRNA	TMEM59	ENSG00000116209.12	ENST00000234831.10:ENST00000371348.5:ENST00000371344.5	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.89145	2.0365	2.18155	0.0283931	0.0119663	0.127654	0.0700178
chr11	214936	215024	11755969	0	+	0.465909	(0.455,0.49]	chr11	897559	6	UTR3	UTR3:EXON_MRNA	RIC8A	ENSG00000177963.15	ENST00000526104.6:ENST00000325207.9:ENST00000527696.5	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.96875	2.03611	2.10347	0.0480352	0.0313707	0.180552	0.13127
chr11	66272156	66272252	11989520	0	+	0.489583	(0.455,0.49]	chr11	921590	1	CDS	CDS:EXON_MRNA	RAB1B	ENSG00000174903.16	ENST00000527397.1:ENST00000311481.11	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.96875	2.03611	2.10347	0.0480352	0.0313707	0.180552	0.13127
chr1	151052541	151052639	1291630	0	-	0.438776	(0.42,0.455]	chr1	128778	17	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	21	2	1.99701	2.035875	2.07474	0.0338882	0.0235036	0.139841	0.111072
chr6	17674968	17675033	7619486	0	-	0.384615	(0.36,0.39]	chr6	580610	2	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.78505	2.03572	2.28639	0.0228572	0.00768469	0.108215	0.050396
chr10	70422344	70422444	11100454	0	+	0.44	(0.42,0.455]	chr10	844350	7	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.86513	2.03556	2.20599	0.0357107	0.0227797	0.147298	0.105293
chrX	53547757	53547843	19077320	0	-	0.662791	(0.59,1]	chrX	1622706	2	CDS	CDS:EXON_MRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000426907.5:ENST00000468322.2:ENST00000474288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	57	2	1.70472	2.0353250000000003	2.36593	0.0236159	0.0141097	0.109018	0.077233
chr12	24815811	24815911	13255714	0	-	0.29	[0,0.29]	chr12	1038842	59	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	23	56	2	1.61757	2.03531	2.45305	0.00940921	2.05297e-4	0.05917	0.00322096
chr16	88719573	88719647	16074442	0	-	0.486486	(0.455,0.49]	chr16	1291631	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000419505.5:ENST00000495568.7:ENST00000466823.3:ENST00000497793.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	67	2	1.51376	2.035295	2.55683	0.0475178	6.07577e-5	0.17993	0.00121305
chr6	31797575	31797665	7662594	0	-	0.366667	(0.36,0.39]	chr6	585349	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5:ENST00000470083.5:ENST00000493387.5:ENST00000491421.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	47	2	1.76426	2.03506	2.30586	0.0178361	7.0243e-4	0.0918323	0.00848325
chr2	158680577	158680655	2158369	0	+	0.397436	(0.39,0.42]	chr2	198908	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PKP4	ENSG00000144283.22	ENST00000389759.8:ENST00000426248.7:ENST00000628904.2:ENST00000389757.7:ENST00000480171.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	39	2	1.36883	2.035055	2.70128	0.0460844	5.30354e-4	0.169423	0.00739546
chr11	77665040	77665139	12473785	0	-	0.313131	(0.29,0.33]	chr11	970340	52	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	1.89143	2.03499	2.17855	0.0332921	0.0183673	0.137922	0.0928041
chr17	57683095	57683195	16287083	0	+	0.37	(0.36,0.39]	chr17	1320878	36	UTR3	UTR3:EXON_MRNA	MSI2	ENSG00000153944.12	ENST00000284073.7:ENST00000674964.1:ENST00000675379.1:ENST00000674522.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.92623	2.034965	2.1437	0.0340515	0.0166541	0.141465	0.0881353
chr7	128771529	128771628	8521872	0	+	0.434343	(0.42,0.455]	chr7	650198	25	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.49942	2.034965	2.57051	0.0468435	0.0265466	0.171905	0.120071
chr8	123320540	123320639	10056867	0	-	0.434343	(0.42,0.455]	chr8	756580	8	UTR3	UTR3:EXON_MRNA	ATAD2	ENSG00000156802.13	ENST00000287394.10:ENST00000517666.5:ENST00000521903.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	1.49942	2.034965	2.57051	0.0468435	0.0265466	0.171905	0.120071
chrX	154770758	154770814	18918741	0	+	0.446429	(0.42,0.455]	chrX	1612295	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	DKC1	ENSG00000130826.18	ENST00000620277.4:ENST00000369550.10:ENST00000412124.5:ENST00000484317.5:ENST00000426673.5:ENST00000475966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	22	2	1.49942	2.034965	2.57051	0.0468435	0.0265466	0.171905	0.120071
chr19	28436624	28436719	17525171	0	-	0.505263	(0.49,0.53]	chr19	1470903	14	EXON_LNCRNA	EXON_LNCRNA	AC005307.5	ENSG00000283403.1	ENST00000592347.5	lncRNA	lncRNA	lncRNA	lncRNA	7	31	2	1.94299	2.034915	2.12684	0.0152714	0.0134683	0.0828908	0.0744999
chr6	31623820	31623909	7115758	0	+	0.52809	(0.49,0.53]	chr6	545814	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	31	2	1.85272	2.03487	2.21702	0.0211739	0.00959574	0.101864	0.0603269
chr8	61203319	61203419	9357857	0	+	0.39	(0.36,0.39]	chr8	715607	2	INTRON	INTRON	CLVS1	ENSG00000177182.11	ENST00000522621.1	protein_coding	protein_coding	protein_coding	protein_coding	25	76	2	1.42991	2.034835	2.63976	0.0110509	6.74761e-5	0.0665375	0.0014342
chr16	88734723	88734798	16074634	0	-	0.613333	(0.59,1]	chr16	1291730	2	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	7	61	2	1.68783	2.0347	2.38157	0.035259	0.00534794	0.146063	0.0392783
chr16	14668568	14668661	15560206	0	+	0.55914	(0.53,0.59]	chr16	1231781	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BFAR	ENSG00000103429.11	ENST00000261658.7:ENST00000565478.1:ENST00000563082.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	2.0289	2.03465	2.0404	0.0373899	0.0362529	0.148525	0.146698
chr1	225419357	225419452	1528242	0	-	0.336842	(0.33,0.36]	chr1	152828	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000487054.1:ENST00000425080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	53	2	1.81272	2.0345500000000003	2.25638	0.00734254	6.53232e-4	0.0490627	0.00808159
chr12	49763284	49763381	12869275	0	+	0.474227	(0.455,0.49]	chr12	999645	5	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	15	59	2	1.97125	2.03451	2.09777	0.00297113	0.0022782	0.0254424	0.0216337
chrM	6291	6387	19377200	0	+	0.552083	(0.53,0.59]	chrM	1649805	4	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	170	789	2	1.92239	2.034345	2.1463	7.35449e-5	1.73909e-5	0.00154901	4.37068e-4
chr16	1962570	1962656	15823816	0	-	0.651163	(0.59,1]	chr16	1261857	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	184	2	1.76291	2.034275	2.30564	0.0035514	8.02302e-4	0.0292104	0.00997959
chr19	34389795	34389895	17300452	0	+	0.44	(0.42,0.455]	chr19	1429867	78	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	32	2	1.58516	2.033875	2.48259	0.0389398	0.0031851	0.158547	0.0267166
chr4	102887728	102887828	5014932	0	+	0.27	[0,0.29]	chr4	408750	4	UTR3	UTR3:EXON_MRNA	CISD2	ENSG00000145354.12	ENST00000273986.10:ENST00000643561.1:ENST00000503643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	14	2	1.94841	2.033865	2.11932	0.0427374	0.0332641	0.168094	0.137922
chr5	163518363	163518462	6343955	0	+	0.232323	[0,0.29]	chr5	494143	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MAT2B	ENSG00000038274.17	ENST00000280969.9:ENST00000518095.5:ENST00000321757.11:ENST00000523606.1:ENST00000521838.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	14	2	1.94841	2.033865	2.11932	0.0427374	0.0332641	0.168094	0.137922
chr9	83661594	83661690	10710360	0	-	0.364583	(0.36,0.39]	chr9	810178	18	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	30	2	1.66836	2.03367	2.39898	0.0474647	0.00221341	0.17993	0.0204985
chr2	85319995	85320094	2770110	0	-	0.494949	(0.49,0.53]	chr2	245643	21	UTR3	UTR3:EXON_MRNA	TGOLN2	ENSG00000152291.14	ENST00000282120.6:ENST00000398263.6:ENST00000377386.8	protein_coding	protein_coding	protein_coding	protein_coding	13	52	2	1.28555	2.03364	2.78173	0.0438576	2.73481e-4	0.163572	0.0044066
chr13	27255254	27255354	13657863	0	+	0.4	(0.39,0.42]	chr13	1076404	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000466550.1:ENST00000485756.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	37	132	2	1.94312	2.0335349999999996	2.12395	5.22931e-4	2.92547e-4	0.0072978	0.00429763
chr1	55064656	55064754	203860	0	+	0.5	(0.49,0.53]	chr1	26182	12	UTR3	UTR3:EXON_MRNA	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	1.65324	2.03344	2.41364	0.0407792	0.0112538	0.163285	0.0665375
chr7	135928836	135928935	9085569	0	-	0.424242	(0.42,0.455]	chr7	693646	22	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	31	125	2	1.59826	2.03339	2.46852	0.00546043	2.20785e-5	0.0412431	5.26507e-4
chr11	27497762	27497860	12314482	0	-	0.285714	[0,0.29]	chr11	952674	35	UTR3	UTR3:EXON_MRNA	LIN7C	ENSG00000148943.12	ENST00000278193.7:ENST00000524596.1	protein_coding	protein_coding	protein_coding	protein_coding	8	23	2	1.81505	2.0333	2.25155	0.0409713	0.00495706	0.163285	0.0368301
chr2	189924216	189924315	2274554	0	+	0.393939	(0.39,0.42]	chr2	206589	1	INTRON	INTRON	C2orf88	ENSG00000187699.10	ENST00000478197.1:ENST00000495546.1	protein_coding	processed_transcript	protein_coding	processed_transcript	16	54	2	1.52118	2.0332149999999998	2.54525	0.0136166	6.03386e-4	0.0747738	0.00814312
chr12	123597606	123597704	13127197	0	+	0.418367	(0.39,0.42]	chr12	1025792	10	UTR3	UTR3:EXON_MRNA	TMED2	ENSG00000086598.11	ENST00000262225.8	protein_coding	protein_coding	protein_coding	protein_coding	34	116	2	1.69747	2.033085	2.3687	0.0019173	7.64787e-5	0.0183299	0.00160272
chr21	29060600	29060660	18201981	0	-	0.483333	(0.455,0.49]	chr21	1544712	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT8	ENSG00000156261.13	ENST00000432178.5:ENST00000540844.5:ENST00000470450.5:ENST00000496121.5:ENST00000286788.9:ENST00000626972.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	63	2	1.49358	2.03295	2.57232	0.0259027	1.31872e-4	0.118706	0.00227389
chr3	150546229	150546324	4517242	0	-	0.757895	(0.59,1]	chr3	374955	2	UTR5	UTR5:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7:ENST00000487153.1:ENST00000491660.1	protein_coding	protein_coding	protein_coding	protein_coding	10	87	2	1.8279	2.032755	2.23761	0.015383	0.00314845	0.0833374	0.0277515
chr9	97930429	97930528	10759655	0	-	0.383838	(0.36,0.39]	chr9	814691	5	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	28	113	2	1.25772	2.032635	2.80755	0.034633	1.63626e-6	0.143761	6.0492e-5
chr12	57058794	57058892	13353761	0	-	0.438776	(0.42,0.455]	chr12	1052211	33	UTR3	UTR3:EXON_MRNA	NEMP1	ENSG00000166881.10	ENST00000300128.9:ENST00000379391.7	protein_coding	protein_coding	protein_coding	protein_coding	9	36	2	1.9028	2.03247	2.16214	0.0112346	0.00696724	0.0665375	0.0474632
chr12	4304957	4305056	12704493	0	+	0.272727	[0,0.29]	chr12	985544	51	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	29	2	1.93281	2.032295	2.13178	0.01348	0.00489392	0.0751291	0.0366648
chr20	56366782	56366881	17834370	0	+	0.343434	(0.33,0.36]	chr20	1507875	6	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	13	43	2	1.93923	2.0321	2.12497	0.0142064	0.00139338	0.0777259	0.0144011
chr17	47824017	47824110	16573216	0	-	0.430108	(0.42,0.455]	chr17	1361399	9	UTR3	UTR3:EXON_MRNA	MRPL10	ENSG00000159111.13	ENST00000351111.7:ENST00000290208.11:ENST00000414011.1:ENST00000421763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	24	2	1.58956	2.031675	2.47379	0.0485703	0.00996858	0.175495	0.0621728
chrX	53379903	53380002	19076621	0	-	0.444444	(0.42,0.455]	chrX	1622486	59	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.58956	2.031675	2.47379	0.0485703	0.00996858	0.175495	0.0621728
chr1	8354986	8355086	847371	0	-	0.39	(0.36,0.39]	chr1	85701	27	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000467350.1:ENST00000400907.6:ENST00000476556.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	18	2	1.85874	2.03159	2.20444	0.0415243	0.0237257	0.164804	0.109365
chr7	158690644	158690722	9159126	0	-	0.384615	(0.36,0.39]	chr7	699647	2	CDS	CDS:EXON_MRNA	NCAPG2	ENSG00000146918.20	ENST00000356309.8:ENST00000432615.5:ENST00000409423.5:ENST00000467785.5:ENST00000409339.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	18	2	1.85874	2.03159	2.20444	0.0415243	0.0237257	0.164804	0.109365
chr4	77037848	77037944	4900566	0	+	0.4375	(0.42,0.455]	chr4	403561	12	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	42	2	1.67369	2.031495	2.3893	0.0164719	0.00221606	0.0873033	0.0205138
chr3	39095032	39095128	3422803	0	+	0.427083	(0.42,0.455]	chr3	297713	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WDR48	ENSG00000114742.14	ENST00000302313.10:ENST00000413099.6:ENST00000420940.6:ENST00000466405.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	21	2	1.72071	2.03131	2.34191	0.0499984	0.0159091	0.179758	0.0854674
chr2	86166575	86166644	2773018	0	-	0.507246	(0.49,0.53]	chr2	246360	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	IMMT	ENSG00000132305.21	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6:ENST00000620815.4:ENST00000474969.5:ENST00000490238.5:ENST00000409258.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	23	2	1.92759	2.0313	2.13501	0.0287874	0.0267071	0.128869	0.118504
chr6	170398669	170398768	7556167	0	+	0.40404	(0.39,0.42]	chr6	576907	27	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	1.50406	2.03125	2.55844	0.0413581	0.0263695	0.164391	0.117164
chr17	75846433	75846533	16685225	0	-	0.63	(0.59,1]	chr17	1373620	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WBP2	ENSG00000132471.12	ENST00000626827.2:ENST00000254806.8:ENST00000585462.5:ENST00000591399.5:ENST00000587642.5:ENST00000591831.5:ENST00000590221.5:ENST00000586257.5:ENST00000588373.5:ENST00000433525.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	69	2	2.01575	2.031165	2.04658	0.0201728	0.00667727	0.0978331	0.0464318
chr1	32679714	32679814	130411	0	+	0.36	(0.33,0.36]	chr1	16119	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000414241.7:ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000458695.6:ENST00000463378.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	30	91	2	1.92052	2.030915	2.14131	7.66126e-4	5.87489e-4	0.00956446	0.00743297
chr5	168551685	168551785	6968934	0	-	0.34	(0.33,0.36]	chr5	532791	33	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.61152	2.03069	2.44986	0.0205125	0.00563343	0.0995152	0.0422191
chr7	139422991	139423084	8566314	0	+	0.397849	(0.39,0.42]	chr7	653683	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2	ENSG00000146963.18	ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	91	2	1.4472	2.030535	2.61387	0.0102971	4.04077e-5	0.0630784	8.68609e-4
chr3	47853257	47853352	4163773	0	-	0.726316	(0.59,1]	chr3	348497	2	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6:ENST00000335271.9	protein_coding	protein_coding	protein_coding	protein_coding	5	45	2	2.01575	2.029685	2.04362	0.036186	0.0201728	0.145024	0.0978331
chr16	66805968	66806026	15986143	0	-	0.362069	(0.36,0.39]	chr16	1282418	2	CDS	CDS:EXON_MRNA	NAE1	ENSG00000159593.15	ENST00000359087.8:ENST00000562428.6:ENST00000290810.8:ENST00000566663.5:ENST00000379463.6:ENST00000568672.1:ENST00000563221.5:ENST00000394074.6:ENST00000562074.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	34	2	1.66035	2.029665	2.39898	0.026191	0.00221341	0.119224	0.0204985
chr7	144647098	144647185	9120714	0	-	0.425287	(0.42,0.455]	chr7	696679	6	INTRON	INTRON	TPK1	ENSG00000196511.14	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	103	2	1.34146	2.029515	2.71757	0.053512	4.93209e-6	0.197317	1.5336e-4
chr17	81933213	81933313	16710122	0	-	0.66	(0.59,1]	chr17	1377898	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PYCR1	ENSG00000183010.17	ENST00000403172.8:ENST00000619204.4:ENST00000629768.2:ENST00000337943.9:ENST00000329875.13:ENST00000577756.5:ENST00000584848.5:ENST00000402252.6	protein_coding	protein_coding	protein_coding	protein_coding	4	37	2	1.88006	2.029475	2.17889	0.0554008	0.025085	0.191173	0.116848
chr2	86137958	86138058	1926710	0	+	0.4	(0.39,0.42]	chr2	181513	5	UTR3	UTR3:EXON_MRNA	PTCD3	ENSG00000132300.19	ENST00000254630.12	protein_coding	protein_coding	protein_coding	protein_coding	8	23	2	1.50045	2.029445	2.55844	0.0335886	0.0263695	0.1408	0.117164
chr19	57292326	57292423	17405783	0	+	0.381443	(0.36,0.39]	chr19	1450092	2	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000537645.5:ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	9	33	2	1.53109	2.029275	2.52746	0.0522406	0.00115604	0.19442	0.0125677
chr11	66646046	66646130	11991560	0	+	0.571429	(0.53,0.59]	chr11	922216	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBM14-RBM4:RBM4	ENSG00000248643.5:ENSG00000173933.21	ENST00000412278.2:ENST00000500635.2:ENST00000396053.9:ENST00000408993.6:ENST00000578778.5:ENST00000398692.8:ENST00000310092.12:ENST00000528039.5:ENST00000506523.6:ENST00000530235.1:ENST00000409406.1:ENST00000515838.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	22	2	1.89806	2.0292149999999998	2.16037	0.0532477	0.0254312	0.184818	0.117089
chr3	128494716	128494815	3727949	0	+	0.535354	(0.53,0.59]	chr3	318583	43	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	4	22	2	1.89806	2.0292149999999998	2.16037	0.0532477	0.0254312	0.184818	0.117089
chr9	37429667	37429767	10255317	0	+	0.59	(0.53,0.59]	chr9	771693	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GRHPR	ENSG00000137106.18	ENST00000318158.11:ENST00000460882.5:ENST00000377824.8:ENST00000491488.5:ENST00000607784.1:ENST00000497693.1:ENST00000480596.5:ENST00000494290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.89806	2.0292149999999998	2.16037	0.0532477	0.0254312	0.184818	0.117089
chr5	43496355	43496454	6561283	0	-	0.464646	(0.455,0.49]	chr5	508493	14	EXON_PSEUDO	EXON_PSEUDO:INTRON	C5orf34:EEF1A1P19	ENSG00000172244.9:ENSG00000249855.1	ENST00000306862.7:ENST00000503655.2:ENST00000513637.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	20	89	2	1.46838	2.02921	2.59004	0.0239373	2.37522e-5	0.112627	5.6086e-4
chr17	21006895	21006987	16477860	0	-	0.576087	(0.53,0.59]	chr17	1346711	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6:ENST00000455117.6:ENST00000579645.5:ENST00000478443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	22	2	1.90953	2.02919	2.14885	0.0517711	0.0262993	0.193577	0.117164
chr19	36149782	36149839	17308839	0	+	0.561404	(0.53,0.59]	chr19	1432254	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAPNS1	ENSG00000126247.11	ENST00000589146.5:ENST00000628018.2:ENST00000628306.2:ENST00000246533.8:ENST00000587718.5:ENST00000590874.5:ENST00000588815.5:ENST00000588780.5:ENST00000629983.2:ENST00000590049.5:ENST00000586851.5:ENST00000590211.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	4	22	2	1.90953	2.02919	2.14885	0.0517711	0.0262993	0.193577	0.117164
chr20	4024004	4024092	17659665	0	+	0.568182	(0.53,0.59]	chr20	1493147	2	EXON_PSEUDO	EXON_PSEUDO	FTLP3	ENSG00000226608.3	ENST00000427242.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	22	2	1.90953	2.02919	2.14885	0.0517711	0.0262993	0.193577	0.117164
chr9	34224075	34224167	10635197	0	-	0.48913	(0.455,0.49]	chr9	804038	2	EXON_PSEUDO	EXON_PSEUDO	RP11-571F15.3	ENSG00000233668.1	ENST00000372214.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	21	77	2	1.51928	2.02902	2.53876	0.00979925	1.64036e-4	0.0613898	0.00268619
chr17	81921421	81921520	16710044	0	-	0.535354	(0.53,0.59]	chr17	1377880	33	UTR3	UTR3:EXON_MRNA	MAFG	ENSG00000197063.11	ENST00000357736.9	protein_coding	protein_coding	protein_coding	protein_coding	10	49	2	1.78471	2.028955	2.2732	0.0122294	0.00369236	0.0703354	0.030936
chr6	28158767	28158866	7105839	0	+	0.323232	(0.29,0.33]	chr6	543601	49	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	8	23	2	1.71587	2.02895	2.34203	0.0253939	0.010113	0.115076	0.0626311
chr6	170400163	170400263	7556182	0	+	0.46	(0.455,0.49]	chr6	576907	42	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.52484	2.02885	2.53286	0.0282409	0.028215	0.127287	0.124386
chr6	36927188	36927287	7135782	0	+	0.353535	(0.33,0.36]	chr6	549805	39	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	10	32	2	1.95788	2.02861	2.09934	0.0120497	0.00652477	0.0694419	0.0455786
chr4	17801436	17801534	5337574	0	-	0.265306	[0,0.29]	chr4	429240	9	UTR3	UTR3:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	14	30	2	1.36289	2.027985	2.69308	0.0417087	0.00137675	0.165482	0.0142677
chr12	123660432	123660531	13127714	0	+	0.333333	(0.33,0.36]	chr12	1025947	3	UTR3	UTR3:EXON_MRNA	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000543341.7:ENST00000228955.11:ENST00000539429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	14	2	1.97842	2.02789	2.07736	0.0469469	0.0442037	0.172163	0.171977
chr2	178508079	178508178	2234405	0	+	0.353535	(0.33,0.36]	chr2	203987	43	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	4	14	2	1.97842	2.02789	2.07736	0.0469469	0.0442037	0.172163	0.171977
chr4	26406181	26406270	4766407	0	+	0.337079	(0.33,0.36]	chr4	394201	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RBPJ	ENSG00000168214.21	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5:ENST00000342320.8:ENST00000504907.5:ENST00000511451.5:ENST00000681264.1:ENST00000504938.1:ENST00000680204.1:ENST00000515023.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	14	2	1.97842	2.02789	2.07736	0.0469469	0.0442037	0.172163	0.171977
chr17	61069964	61070058	16304044	0	+	0.553191	(0.53,0.59]	chr17	1322405	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	BCAS3:RPL23AP74	ENSG00000141376.23:ENSG00000227694.1	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000592827.1:ENST00000437246.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_transcript:processed_pseudogene	11	54	2	1.97045	2.027735	2.08502	0.00828532	0.00392326	0.0543012	0.0314693
chr9	127449280	127449362	10859990	0	-	0.47561	(0.455,0.49]	chr9	822664	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1:ENST00000483598.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	114	2	1.96982	2.0274349999999997	2.08505	0.00149057	2.19554e-4	0.015935	0.00339463
chr16	28966117	28966215	15621798	0	+	0.316327	(0.29,0.33]	chr16	1238772	24	UTR3	UTR3:EXON_MRNA:INTRON	RP11-231C14.10:NFATC2IP	ENSG00000288630.1:ENSG00000176953.12	ENST00000675058.1:ENST00000320805.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	15	2	1.99415	2.02741	2.06067	0.0384863	0.0333928	0.149227	0.140128
chr19	1390960	1391050	17192911	0	+	0.677778	(0.59,1]	chr19	1412102	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS7	ENSG00000115286.20	ENST00000546283.5:ENST00000545446.5:ENST00000618074.4:ENST00000543289.5:ENST00000539480.5:ENST00000538662.5:ENST00000313408.11:ENST00000436115.6:ENST00000233627.14:ENST00000534853.5:ENST00000620479.4:ENST00000546172.7:ENST00000414651.3:ENST00000538929.5:ENST00000622587.4:ENST00000538523.5:ENST00000540530.5:ENST00000535382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	44	2	1.81066	2.0273149999999998	2.24397	0.0369806	0.0206682	0.145401	0.0997234
chrX	53632486	53632564	19078251	0	-	0.435897	(0.42,0.455]	chrX	1623026	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HUWE1	ENSG00000086758.16	ENST00000262854.11:ENST00000342160.7:ENST00000612484.4:ENST00000218328.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	34	2	1.71256	2.027235	2.34191	0.0159091	0.012801	0.0854674	0.0725185
chr6	149727068	149727133	8018883	0	-	0.461538	(0.455,0.49]	chr6	612718	1	CDS	CDS:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7:ENST00000367404.8	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.96875	2.02689	2.08503	0.0480352	0.0158994	0.180552	0.0856643
chrX	41224888	41224962	18669174	0	+	0.459459	(0.455,0.49]	chrX	1592128	3	CDS	CDS:EXON_MRNA	USP9X	ENSG00000124486.14	ENST00000324545.9:ENST00000378308.7	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.96875	2.02689	2.08503	0.0480352	0.0158994	0.180552	0.0856643
chr1	47218445	47218543	985534	0	-	0.469388	(0.455,0.49]	chr1	104046	23	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	11	44	2	2.00791	2.0267549999999996	2.0456	0.00663817	0.00484225	0.0456262	0.0366328
chr7	128974867	128974962	9060369	0	-	0.547368	(0.53,0.59]	chr7	691779	1	CDS	CDS:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	5	27	2	1.89806	2.026045	2.15403	0.0532477	0.0118065	0.184818	0.0686664
chr1	167919978	167920034	1349118	0	-	0.482143	(0.455,0.49]	chr1	138231	1	CDS	CDS:EXON_MRNA	MPC2	ENSG00000143158.11	ENST00000271373.9:ENST00000367846.8:ENST00000458574.1	protein_coding	protein_coding	protein_coding	protein_coding	13	49	2	1.71925	2.026015	2.33278	0.00786771	0.00314029	0.0514287	0.0276877
chrX	47209927	47210025	18686866	0	+	0.653061	(0.59,1]	chrX	1593245	1	CDS	CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.87297	2.02593	2.17889	0.0308113	0.025085	0.130016	0.116848
chr6	31634902	31634977	7115895	0	+	0.613333	(0.59,1]	chr6	545885	3	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000484787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	44	2	1.74555	2.02589	2.30623	0.0444308	0.0170607	0.165174	0.0896731
chr19	38730020	38730118	17323770	0	+	0.459184	(0.455,0.49]	chr19	1434386	1	UTR3	UTR3:EXON_MRNA	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000589528.1	protein_coding	protein_coding	protein_coding	protein_coding	8	33	2	2.00242	2.025445	2.04847	0.0192065	0.0074882	0.0943643	0.0495195
chrX	107123516	107123606	19161050	0	-	0.3	(0.29,0.33]	chrX	1629819	2	UTR3	UTR3:EXON_MRNA	NUP62CL	ENSG00000198088.10	ENST00000372466.8:ENST00000484614.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	26	2	1.86069	2.02491	2.18913	0.021654	0.00629431	0.103926	0.044701
chr1	155289980	155290079	1307530	0	-	0.565657	(0.53,0.59]	chr1	132189	8	UTR3	UTR3:EXON_MRNA	PKLR	ENSG00000143627.19	ENST00000342741.6:ENST00000392414.7	protein_coding	protein_coding	protein_coding	protein_coding	9	43	2	1.66703	2.02447	2.38191	0.0193523	0.00477439	0.0969734	0.0368489
chr11	9417058	9417148	11792583	0	+	0.366667	(0.36,0.39]	chr11	902838	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.85874	2.0243700000000002	2.19	0.0415243	0.0111937	0.164804	0.0665375
chrX	136880596	136880680	19250797	0	-	0.654762	(0.59,1]	chrX	1635490	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1:ENST00000567262.5:ENST00000563370.1:ENST00000565907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	70	2	1.73729	2.02437	2.31145	0.0303312	0.00362809	0.129874	0.029797
chr2	26389004	26389103	1687332	0	+	0.40404	(0.39,0.42]	chr2	164957	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SELENOI	ENSG00000138018.18	ENST00000613142.4:ENST00000260585.12	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.89968	2.02434	2.149	0.0298458	0.0149155	0.130016	0.0812412
chr16	89562883	89562942	15810105	0	+	0.40678	(0.39,0.42]	chr16	1258683	1	CDS	CDS:UTR3:EXON_MRNA	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	67	230	2	1.85125	2.02409	2.19693	2.21415e-4	6.14784e-5	0.00341572	0.00133401
chr12	53040920	53041019	12884653	0	+	0.484848	(0.455,0.49]	chr12	1001808	8	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	18	61	2	1.44565	2.02406	2.60247	0.013219	8.0052e-4	0.0740932	0.00996169
chr1	205716095	205716195	1462016	0	-	0.32	(0.29,0.33]	chr1	147460	34	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	23	59	2	1.7429	2.023755	2.30461	0.00429443	5.08758e-4	0.0336102	0.00661955
chrX	120604168	120604236	18844373	0	+	0.544118	(0.53,0.59]	chrX	1605824	2	UTR5	UTR5:EXON_MRNA:INTRON	MCTS1	ENSG00000232119.8	ENST00000493879.5:ENST00000493274.5:ENST00000371317.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	30	2	1.77634	2.023735	2.27113	0.025972	0.0178853	0.117079	0.0918323
chr11	59806346	59806446	12401418	0	-	0.51	(0.49,0.53]	chr11	959577	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MRPL16	ENSG00000166902.5	ENST00000300151.5	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	1.93897	2.02357	2.10817	0.0151118	0.00798134	0.0820541	0.0527008
chr1	11022654	11022737	42043	0	+	0.337349	(0.33,0.36]	chr1	5020	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000629725.2:ENST00000439080.6:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000649624.1:ENST00000622057.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	31	2	1.70359	2.0233499999999998	2.34311	0.0245566	0.00300559	0.114841	0.0256959
chr18	21866162	21866262	16779510	0	+	0.43	(0.42,0.455]	chr18	1384234	16	UTR3	UTR3:EXON_MRNA	MIB1	ENSG00000101752.12	ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding	12	39	2	1.3404	2.023255	2.70611	0.0318543	0.00397496	0.133211	0.0322851
chr5	151807234	151807333	6299798	0	+	0.444444	(0.42,0.455]	chr5	491960	18	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	21	2	1.71996	2.0231250000000003	2.32629	0.0542346	0.0153564	0.199653	0.0832114
chr1	109313445	109313544	1219464	0	-	0.474747	(0.455,0.49]	chr1	118935	40	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	12	47	2	1.74209	2.023125	2.30416	0.0121017	0.00182199	0.0697245	0.0176039
chr11	61403622	61403721	12404522	0	-	0.414141	(0.39,0.42]	chr11	960350	11	UTR3	UTR3:EXON_MRNA	CPSF7	ENSG00000149532.16	ENST00000340437.8:ENST00000394888.8:ENST00000439958.8	protein_coding	protein_coding	protein_coding	protein_coding	6	22	2	1.91489	2.023105	2.13132	0.02908	0.0197788	0.127648	0.0960939
chr1	23309860	23309959	894701	0	-	0.323232	(0.29,0.33]	chr1	92818	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	47	2	1.5621	2.0229850000000003	2.48387	0.0240763	2.55873e-4	0.113253	0.0038455
chr20	49075452	49075520	17811650	0	+	0.441176	(0.42,0.455]	chr20	1506528	3	CDS	CDS:EXON_MRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.71996	2.0229299999999997	2.3259	0.0542346	0.0484606	0.199653	0.175495
chr7	128817657	128817757	8522184	0	+	0.43	(0.42,0.455]	chr7	650288	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCDC136	ENSG00000128596.17	ENST00000378685.8:ENST00000464832.5:ENST00000297788.9:ENST00000487361.5:ENST00000480137.1:ENST00000494552.5:ENST00000528772.1:ENST00000464672.1:ENST00000471729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	16	2	1.71996	2.0229299999999997	2.3259	0.0542346	0.0484606	0.199653	0.175495
chr15	65576477	65576576	14980157	0	+	0.353535	(0.33,0.36]	chr15	1177605	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HACD3	ENSG00000074696.13	ENST00000562901.5:ENST00000261875.10:ENST00000442729.6:ENST00000565299.5:ENST00000568793.5:ENST00000566074.5:ENST00000566511.5:ENST00000569894.5:ENST00000561763.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	35	2	1.87524	2.02291	2.17058	0.01664	0.00509273	0.0878065	0.0376359
chr7	150949696	150949790	9128651	0	-	0.606383	(0.59,1]	chr7	697467	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	148	2	1.34586	2.02291	2.69996	0.0259403	1.85031e-4	0.118873	0.00296795
chr17	7575118	7575188	16105647	0	+	0.471429	(0.455,0.49]	chr17	1296951	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000584054.5:ENST00000293831.13:ENST00000581621.1:ENST00000396527.7:ENST00000578495.5:ENST00000578754.5:ENST00000582169.5:ENST00000578476.5:ENST00000584712.5:ENST00000580461.5:ENST00000579139.1:ENST00000581544.5:ENST00000584901.5:ENST00000583802.5:ENST00000585024.5:ENST00000582848.5:ENST00000583899.5:ENST00000582213.5:ENST00000577269.5:ENST00000584784.5:ENST00000582746.5:ENST00000584860.5:ENST00000581770.5:ENST00000577738.5:ENST00000581384.5:ENST00000577929.1:ENST00000578324.5:ENST00000584798.1:ENST00000577731.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	13	50	2	1.50336	2.022895	2.54243	0.0237023	5.34358e-4	0.109365	0.00743689
chr20	43709962	43710062	17794460	0	+	0.57	(0.53,0.59]	chr20	1504239	1	CDS	CDS:EXON_MRNA	MYBL2	ENSG00000101057.16	ENST00000396863.8:ENST00000217026.5	protein_coding	protein_coding	protein_coding	protein_coding	7	37	2	1.90953	2.02271	2.13589	0.0517711	0.00395526	0.193577	0.0316946
chr10	73776985	73777081	11115946	0	+	0.385417	(0.36,0.39]	chr10	845949	9	INTRON	INTRON	FUT11	ENSG00000196968.11	ENST00000489264.2	protein_coding	processed_transcript	protein_coding	processed_transcript	7	25	2	1.66836	2.02255	2.37674	0.0474647	0.00529284	0.17993	0.0390084
chr2	65269024	65269121	1854379	0	+	0.360825	(0.36,0.39]	chr2	175984	4	UTR3	UTR3:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding	34	106	2	1.56095	2.022545	2.48414	0.00450118	2.74733e-5	0.0344284	6.97596e-4
chr1	171561017	171561103	537302	0	+	0.488372	(0.455,0.49]	chr1	57668	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1:ENST00000644916.1	protein_coding	protein_coding	protein_coding	protein_coding	10	40	2	1.56466	2.022355	2.48005	0.0309562	0.00142356	0.131262	0.0146333
chr19	49490477	49490503	17370747	0	+	0.615385	(0.59,1]	chr19	1443120	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	37	285	2	1.54192	2.022215	2.50251	0.00573126	1.11663e-4	0.0417422	0.00213525
chr18	8917567	8917664	16750734	0	+	0.556701	(0.53,0.59]	chr18	1381318	9	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	8	36	2	1.4107	2.0219300000000002	2.63316	0.046906	0.00474401	0.179138	0.0361423
chr11	102396526	102396623	12562683	0	-	0.329897	(0.29,0.33]	chr11	974345	3	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	1.90299	2.0219199999999997	2.14085	0.0126076	0.0117968	0.0719957	0.0686664
chr22	21642436	21642523	18303265	0	+	0.62069	(0.59,1]	chr22	1554225	1	CDS	CDS:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5:ENST00000466935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	51	2	1.78511	2.021915	2.25872	0.0261127	0.0193473	0.118976	0.0969537
chr2	159743060	159743156	2162980	0	+	0.46875	(0.455,0.49]	chr2	199180	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000421037.1:ENST00000473749.1:ENST00000409591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	29	2	1.47423	2.021805	2.56938	0.0418992	0.00635313	0.166188	0.0449666
chrX	65667747	65667841	18715631	0	+	0.62766	(0.59,1]	chrX	1596815	2	UTR5	UTR5:EXON_MRNA:INTRON	MSN	ENSG00000147065.17	ENST00000609672.5:ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	8	67	2	1.61978	2.021795	2.42381	0.0317775	0.00452614	0.134199	0.0346018
chr17	42207642	42207728	16546701	0	-	0.476744	(0.455,0.49]	chr17	1357158	2	CDS	CDS:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000481253.2:ENST00000468496.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	26	2	1.96875	2.0217099999999997	2.07467	0.0480352	0.00905778	0.180552	0.0574177
chr1	23310553	23310638	894708	0	-	0.541176	(0.53,0.59]	chr1	92820	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	49	2	1.48314	2.02158	2.56002	0.0178204	0.00634904	0.0934844	0.0446708
chr1	10419844	10419939	39916	0	+	0.442105	(0.42,0.455]	chr1	4839	2	UTR3	UTR3:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000270776.13	protein_coding	protein_coding	protein_coding	protein_coding	23	88	2	1.46608	2.02157	2.57706	0.0128246	5.28615e-5	0.0719798	0.00107799
chr6	67887263	67887362	7784133	0	-	0.494949	(0.49,0.53]	chr6	596229	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	74	284	2	1.64808	2.021435	2.39479	8.52194e-4	9.41265e-6	0.00994797	2.89167e-4
chr3	23920691	23920790	3358574	0	+	0.292929	(0.29,0.33]	chr3	294139	13	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	21	69	2	1.5621	2.021395	2.48069	0.0240763	4.07005e-5	0.113253	8.74418e-4
chr16	58707413	58707508	15967617	0	-	0.368421	(0.36,0.39]	chr16	1281403	4	UTR3	UTR3:EXON_MRNA	GOT2	ENSG00000125166.13	ENST00000245206.10	protein_coding	protein_coding	protein_coding	protein_coding	4	15	2	1.89872	2.02121	2.1437	0.056542	0.0340515	0.19417	0.141465
chr1	35192858	35192949	936853	0	-	0.747253	(0.59,1]	chr1	98518	8	CDS	CDS:EXON_MRNA	SFPQ	ENSG00000116560.11	ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	9	77	2	1.96195	2.02098	2.08001	0.0144738	0.00582883	0.0790046	0.0421606
chr1	42842516	42842604	162245	0	+	0.534091	(0.53,0.59]	chr1	20420	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000647120.1:ENST00000487556.6:ENST00000372514.7:ENST00000328249.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	48	2	1.78041	2.02095	2.2614899999999998	0.0407112	0.00132759	0.163285	0.0139137
chr14	102033123	102033182	14495705	0	+	0.525424	(0.49,0.53]	chr14	1133194	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	19	2	1.90685	2.02093	2.13501	0.0534351	0.0287874	0.184995	0.128869
chr17	42315453	42315550	16547436	0	-	0.463918	(0.455,0.49]	chr17	1357253	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	19	2	1.68956	2.02085	2.35214	0.0455621	0.0381365	0.168044	0.155455
chr20	50893638	50893735	18006319	0	-	0.505155	(0.49,0.53]	chr20	1526243	23	CDS	CDS:EXON_MRNA:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1	protein_coding	protein_coding	protein_coding	protein_coding	4	19	2	1.99044	2.020815	2.05119	0.0435903	0.0360743	0.170594	0.145024
chr3	123948690	123948785	4420619	0	-	0.515789	(0.49,0.53]	chr3	366938	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCDC14	ENSG00000175455.16	ENST00000463996.1:ENST00000409697.8:ENST00000488653.6:ENST00000485727.5:ENST00000495381.5:ENST00000409657.5:ENST00000489746.5:ENST00000433542.7:ENST00000310351.8:ENST00000483247.1:ENST00000419247.5:ENST00000471054.5:ENST00000426152.5:ENST00000435910.5:ENST00000434954.1:ENST00000477268.5:ENST00000438440.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	19	2	1.99044	2.020815	2.05119	0.0435903	0.0360743	0.170594	0.145024
chr6	38682807	38682875	7689701	0	-	0.5	(0.49,0.53]	chr6	589585	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	50	2	1.65423	2.0206999999999997	2.38717	0.0288442	6.74369e-4	0.129096	0.00826103
chr20	49094808	49094885	17811857	0	+	0.428571	(0.42,0.455]	chr20	1506592	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3:ENST00000469700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	43	2	1.87922	2.02068	2.16214	0.00696724	0.00619114	0.0474632	0.0440614
chr2	96193075	96193160	2789896	0	-	0.447059	(0.42,0.455]	chr2	248626	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000462501.1:ENST00000443962.1:ENST00000495687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	29	2	1.99701	2.02058	2.04415	0.0235036	0.0101476	0.111072	0.0627153
chr17	77500111	77500208	16364496	0	+	0.608247	(0.59,1]	chr17	1329211	16	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.8502	2.02036	2.19052	0.0334531	0.0237927	0.140296	0.109413
chr5	31554368	31554466	5919703	0	+	0.387755	(0.36,0.39]	chr5	463928	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000325366.14:ENST00000504866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	26	2	1.85874	2.0203100000000003	2.18188	0.0415243	0.00600314	0.164804	0.042887
chr17	81569015	81569111	16708306	0	-	0.395833	(0.39,0.42]	chr17	1377468	1	CDS	CDS:UTR3:EXON_MRNA	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000573519.5:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	30	2	1.89145	2.020225	2.149	0.0149155	0.0119663	0.0812412	0.0700178
chr19	1244096	1244185	17192040	0	+	0.617977	(0.59,1]	chr19	1411832	1	CDS	CDS:EXON_MRNA	ATP5F1D	ENSG00000099624.8	ENST00000395633.5:ENST00000215375.7:ENST00000590265.5:ENST00000588538.5:ENST00000591660.5:ENST00000591249.5:ENST00000589478.1:ENST00000614837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	66	2	1.40785	2.019995	2.63214	0.0398271	0.005622	0.152926	0.0421873
chr6	31636803	31636874	7115924	0	+	0.704225	(0.59,1]	chr6	545905	2	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000487839.1:ENST00000492691.5:ENST00000462617.1:ENST00000482441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	174	2	1.91452	2.01993	2.12534	0.00274882	0.00125994	0.0238852	0.013837
chr17	63589663	63589761	16317550	0	+	0.367347	(0.36,0.39]	chr17	1323671	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000415273.2:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	88	2	1.87684	2.0197450000000003	2.16265	0.00179256	2.91638e-4	0.0183089	0.00428484
chr9	83661498	83661594	10710359	0	-	0.34375	(0.33,0.36]	chr9	810178	17	UTR3	UTR3:EXON_MRNA	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000533705.5:ENST00000257468.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	42	2	1.81839	2.019685	2.22098	0.0087551	0.00172428	0.0562439	0.0178074
chr6	26138536	26138632	7101276	0	+	0.375	(0.36,0.39]	chr6	542801	6	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	53	2	1.57061	2.01966	2.46871	0.0228883	2.61929e-4	0.108345	0.0039188
chr18	31548515	31548614	16809185	0	+	0.272727	[0,0.29]	chr18	1386482	19	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	12	33	2	1.79922	2.0195350000000003	2.23985	0.0223458	0.00177977	0.106042	0.0172974
chr17	8220833	8220930	16432190	0	-	0.463918	(0.455,0.49]	chr17	1340369	3	EXON_LNCRNA	EXON_LNCRNA	LINC00324	ENSG00000178977.3	ENST00000315707.3	lncRNA	lncRNA	lncRNA	lncRNA	16	62	2	1.97125	2.019475	2.0677	0.00297113	0.00189871	0.0254424	0.0189992
chr17	28573360	28573442	16485911	0	-	0.548781	(0.53,0.59]	chr17	1347737	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-192H23.4:ALDOC	ENSG00000258472.9:ENSG00000109107.14	ENST00000481916.6:ENST00000395321.6:ENST00000395319.7:ENST00000226253.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	31	150	2	1.76067	2.019355	2.27804	0.00243812	8.3522e-5	0.0228982	0.00157646
chr2	84916461	84916560	1921004	0	+	0.606061	(0.59,1]	chr2	180721	7	EXON_PSEUDO	EXON_PSEUDO	RPS2P17	ENSG00000213399.3	ENST00000449856.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	39	2	1.61229	2.01934	2.42639	0.0434296	0.0409084	0.163285	0.162491
chr1	112913403	112913500	1232310	0	-	0.237113	[0,0.29]	chr1	120455	17	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	8	21	2	1.72144	2.019205	2.31697	0.0389538	0.00756459	0.158558	0.0499309
chr17	59644348	59644421	16295052	0	+	0.424658	(0.42,0.455]	chr17	1321605	2	CDS	CDS:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	55	2	1.87159	2.018925	2.16626	0.0214479	7.54594e-4	0.102998	0.00902115
chr2	53875626	53875690	2664201	0	-	0.421875	(0.42,0.455]	chr2	238136	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000476586.5:ENST00000466539.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	21	2	1.84101	2.018875	2.19674	0.0352234	0.0254904	0.142054	0.117089
chr5	140243694	140243789	6253243	0	+	0.378947	(0.36,0.39]	chr5	487354	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CYSTM1	ENSG00000120306.11	ENST00000509589.5:ENST00000509789.2:ENST00000504227.5:ENST00000261811.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	25	2	1.89391	2.018805	2.1437	0.0340515	0.0121625	0.141465	0.0701019
chr6	34286558	34286658	7672467	0	-	0.4	(0.39,0.42]	chr6	588026	70	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	2.01081	2.01872	2.02663	0.0207537	0.0130764	0.100574	0.0729985
chr3	152462384	152462483	3818502	0	+	0.40404	(0.39,0.42]	chr3	325707	1	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	117	2	1.83825	2.0185500000000003	2.19885	9.78859e-4	1.70005e-4	0.0109471	0.00299582
chr5	150399809	150399908	6294951	0	+	0.585859	(0.53,0.59]	chr5	491342	1	UTR3	UTR3:EXON_MRNA	TCOF1	ENSG00000070814.22	ENST00000377797.7:ENST00000445265.6:ENST00000323668.11:ENST00000643257.2:ENST00000439160.6:ENST00000427724.7:ENST00000513346.5:ENST00000515516.1	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	1.97928	2.01831	2.05734	0.0218546	0.0167029	0.104785	0.0883198
chr12	68732636	68732687	12940208	0	+	0.392157	(0.39,0.42]	chr12	1008489	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000229179.9:ENST00000535718.5:ENST00000539906.5:ENST00000538993.1:ENST00000401003.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	18	2	1.53821	2.01761	2.49701	0.0571218	0.0339607	0.196074	0.141431
chr8	22006385	22006485	9222148	0	+	0.37	(0.36,0.39]	chr8	705059	14	UTR3	UTR3:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14	protein_coding	protein_coding	protein_coding	protein_coding	11	37	2	1.85406	2.017175	2.18029	0.0077769	0.00722993	0.0517139	0.0485215
chr8	100920294	100920394	9976219	0	-	0.45	(0.42,0.455]	chr8	752728	39	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	127	2	1.54887	2.017085	2.4853	0.00638173	1.94038e-5	0.0448888	4.734e-4
chr8	129352380	129352480	10084261	0	-	0.33	(0.29,0.33]	chr8	758165	9	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000674599.1:ENST00000675506.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000675722.1:ENST00000674580.1:ENST00000675393.1:ENST00000520048.1	lncRNA	lncRNA	lncRNA	lncRNA	10	28	2	1.75944	2.0168749999999998	2.27431	0.0226161	0.00432139	0.107244	0.0335176
chr19	15265546	15265643	17485212	0	-	0.57732000000000006	(0.53,0.59]	chr19	1465373	3	CDS	CDS:UTR3:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	50	2	1.94437	2.016785	2.0892	0.0143432	0.00316986	0.0783202	0.0267094
chr1	32771160	32771258	130784	0	+	0.683673	(0.59,1]	chr1	16158	14	CDS	CDS:EXON_MRNA:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.55494	2.016655	2.47837	0.0511194	0.00970721	0.182342	0.0608296
chrX	123908480	123908579	18851077	0	+	0.343434	(0.33,0.36]	chrX	1606109	14	UTR3	UTR3:EXON_MRNA	XIAP	ENSG00000101966.13	ENST00000434753.7:ENST00000371199.8:ENST00000355640.3	protein_coding	protein_coding	protein_coding	protein_coding	8	25	2	1.69981	2.016515	2.33322	0.0370662	0.00451613	0.145667	0.0350603
chr1	156745296	156745373	1316787	0	-	0.480519	(0.455,0.49]	chr1	133982	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5:ENST00000482651.5:ENST00000368206.5:ENST00000469145.5:ENST00000471377.5:ENST00000495212.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	50	2	1.8731	2.016475	2.15985	0.0128965	0.00299234	0.0722356	0.0256001
chr7	92608987	92609086	8924929	0	-	0.575758	(0.53,0.59]	chr7	681136	42	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.88327	2.01606	2.14885	0.0298124	0.0262993	0.129773	0.117164
chr10	119036203	119036268	11717190	0	-	0.553846	(0.53,0.59]	chr10	893757	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	5	26	2	1.87133	2.01585	2.16037	0.0308819	0.0254312	0.130016	0.117089
chrX	154534097	154534160	19278711	0	-	0.555556	(0.53,0.59]	chrX	1638556	2	CDS	CDS:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10:ENST00000369620.6:ENST00000393564.6:ENST00000439227.5:ENST00000440967.5:ENST00000489497.1:ENST00000433845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	26	2	1.87133	2.01585	2.16037	0.0308819	0.0254312	0.130016	0.117089
chr14	96566230	96566328	14476246	0	+	0.336735	(0.33,0.36]	chr14	1130890	13	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	10	31	2	1.97993	2.015685	2.05144	0.00903135	0.00884101	0.0573114	0.0563713
chr16	69757376	69757469	15995191	0	-	0.516129	(0.49,0.53]	chr16	1284292	10	EXON_PSEUDO	EXON_PSEUDO	CTD-2033A16.2	ENSG00000260290.2	ENST00000566277.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	6	26	2	1.76393	2.01517	2.26641	0.0279906	0.0190546	0.123926	0.093872
chr9	120763859	120763959	10833532	0	-	0.5	(0.49,0.53]	chr9	820413	70	UTR3	UTR3:EXON_MRNA:INTRON	FBXW2	ENSG00000119402.18	ENST00000493559.1:ENST00000684405.1:ENST00000684001.1:ENST00000684047.1:ENST00000608872.6:ENST00000453291.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	26	2	1.76393	2.01517	2.26641	0.0279906	0.0190546	0.123926	0.093872
chr8	123207415	123207501	9588602	0	+	0.732558	(0.59,1]	chr8	727197	4	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	12	104	2	1.60816	2.01464	2.42112	0.0256592	8.09314e-4	0.117611	0.0095085
chr4	176331070	176331168	5242252	0	+	0.367347	(0.36,0.39]	chr4	421869	29	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.7286	2.01417	2.29974	0.0227476	0.00926291	0.105293	0.0586162
chr6	27132369	27132469	7648714	0	-	0.63	(0.59,1]	chr6	582716	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	H2BC11	ENSG00000124635.9	ENST00000607124.1:ENST00000606923.1:ENST00000339812.3	protein_coding	protein_coding	protein_coding	protein_coding	22	181	2	1.99509	2.01414	2.03319	0.00237615	0.00131275	0.0224323	0.0138092
chr17	42201343	42201441	16546632	0	-	0.44898	(0.42,0.455]	chr17	1357142	23	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.83064	2.01369	2.19674	0.0254904	0.0149305	0.117089	0.081162
chr5	44809396	44809479	5961515	0	+	0.662651	(0.59,1]	chr5	467190	5	CDS	CDS:EXON_MRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6	protein_coding	protein_coding	protein_coding	protein_coding	7	60	2	1.77181	2.01359	2.25537	0.0267363	0.00890868	0.118611	0.0567495
chr9	128696110	128696207	10480941	0	+	0.360825	(0.36,0.39]	chr9	790686	16	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	20	63	2	1.48345	2.013585	2.54372	0.0152298	1.61961e-4	0.0828908	0.00266296
chr11	46754977	46755067	12383596	0	-	0.455556	(0.455,0.49]	chr11	956023	2	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000527333.5:ENST00000526876.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	36	2	1.80405	2.013435	2.22282	0.017721400000000002	0.00483628	0.0918323	0.0366328
chr1	15935468	15935568	71891	0	+	0.6	(0.59,1]	chr1	8104	75	CDS	CDS:EXON_MRNA	SPEN	ENSG00000065526.12	ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.72057	2.0134	2.30623	0.0314051	0.0170607	0.131369	0.0896731
chr1	17425612	17425684	874197	0	-	0.638889	(0.59,1]	chr1	89652	2	CDS	CDS:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding	5	44	2	1.90752	2.01323	2.11894	0.0293157	0.0282297	0.128478	0.127287
chr1	228494556	228494652	746494	0	+	0.552083	(0.53,0.59]	chr1	75813	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF187	ENSG00000168159.14	ENST00000305943.9:ENST00000482739.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	66	2	1.67949	2.01323	2.34697	0.0184962	5.33622e-4	0.0932453	0.00685157
chr20	36049250	36049348	17956034	0	-	0.387755	(0.36,0.39]	chr20	1521358	38	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	7	24	2	1.72655	2.0131449999999997	2.29974	0.033108	0.00926291	0.13754	0.0586162
chr18	59359144	59359244	17142641	0	-	0.69	(0.59,1]	chr18	1407671	1	CDS_START	CDS_START:CDS:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	83	2	1.79898	2.013115	2.22725	0.0126163	0.00535937	0.0720428	0.0406564
chrX	151407896	151407993	18909819	0	+	0.56701	(0.53,0.59]	chrX	1610139	30	UTR3	UTR3:EXON_MRNA	VMA21	ENSG00000160131.14	ENST00000330374.7	protein_coding	protein_coding	protein_coding	protein_coding	13	63	2	1.8478	2.012855	2.17791	0.0069346	0.00204468	0.0473133	0.0193012
chr12	54240656	54240756	13342933	0	-	0.44	(0.42,0.455]	chr12	1049602	93	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	1.79613	2.01273	2.22933	0.0121028	0.0102262	0.0701019	0.062872
chr1	203723880	203723934	669714	0	+	0.462963	(0.455,0.49]	chr1	67490	1	CDS	CDS:EXON_MRNA	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6:ENST00000458092.5	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.75044	2.01268	2.27492	0.0463133	0.0193827	0.170072	0.0943643
chr8	26411284	26411381	9238663	0	+	0.278351	[0,0.29]	chr8	707583	10	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	16	44	2	1.5208	2.01261	2.50442	0.0315911	2.32754e-4	0.133433	0.00355688
chr17	40170829	40170925	16223499	0	+	0.364583	(0.36,0.39]	chr17	1311972	5	UTR3	UTR3:EXON_MRNA	CASC3	ENSG00000108349.17	ENST00000264645.12:ENST00000394114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	26	2	1.45709	2.012455	2.56782	0.0417071	0.00659672	0.165482	0.0460001
chr4	128270523	128270622	5639350	0	-	0.282828	[0,0.29]	chr4	449280	14	UTR3	UTR3:EXON_MRNA	PGRMC2	ENSG00000164040.18	ENST00000613358.4:ENST00000520121.6:ENST00000296425.10:ENST00000394276.3:ENST00000512483.5	protein_coding	protein_coding	protein_coding	protein_coding	12	31	2	1.96979	2.012435	2.05508	0.00812605	0.00666045	0.0534435	0.0463232
chr7	54757494	54757588	8823849	0	-	0.425532	(0.42,0.455]	chr7	673291	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SEC61G	ENSG00000132432.14	ENST00000395535.7:ENST00000415949.5:ENST00000352861.9:ENST00000450622.1:ENST00000460484.5:ENST00000480303.1:ENST00000461536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	64	2	1.80232	2.0123699999999998	2.22242	0.00427492	0.001203	0.0332688	0.0134762
chrX	153700491	153700580	19273607	0	-	0.52809	(0.49,0.53]	chrX	1637347	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCAP31	ENSG00000185825.17	ENST00000345046.12:ENST00000458587.8:ENST00000647529.1:ENST00000645377.1:ENST00000672675.1:ENST00000646514.1:ENST00000645006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	23	2	1.90685	2.01234	2.11783	0.0534351	0.0142725	0.184995	0.0780078
chr17	21000183	21000282	16477787	0	-	0.464646	(0.455,0.49]	chr17	1346694	7	UTR3	UTR3:EXON_MRNA	USP22	ENSG00000124422.12	ENST00000261497.9:ENST00000537526.6	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.72305	2.01222	2.30139	0.0530131	0.0324537	0.195536	0.134899
chr11	65438574	65438674	11984729	0	+	0.37	(0.36,0.39]	chr11	920390	146	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	24	76	2	1.73407	2.012035	2.29	0.00372893	2.53714e-4	0.0302984	0.00415705
chr2	231454824	231454923	3226707	0	-	0.272727	[0,0.29]	chr2	283836	14	UTR3	UTR3:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	51	131	2	1.03259	2.0115600000000002	2.99053	0.0435937	1.65803e-7	0.170594	8.64789e-6
chr10	73007216	73007307	11568229	0	-	0.230769	[0,0.29]	chr10	880432	1	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	1.81505	2.01153	2.20801	0.0409713	0.00342283	0.163285	0.0283456
chr8	140516009	140516105	9641877	0	+	0.333333	(0.33,0.36]	chr8	730104	9	UTR3	UTR3:EXON_MRNA	CHRAC1	ENSG00000104472.10	ENST00000519533.1:ENST00000220913.10	protein_coding	protein_coding	protein_coding	protein_coding	10	36	2	1.65713	2.011165	2.3652	0.0528205	8.24779e-4	0.195536	0.00968205
chr12	24814314	24814414	13255699	0	-	0.31	(0.29,0.33]	chr12	1038842	44	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	24	65	2	1.81975	2.01082	2.20189	0.0018417	0.00113851	0.0177899	0.0129849
chr21	37514818	37514918	18117426	0	+	0.35	(0.33,0.36]	chr21	1536308	24	UTR3	UTR3:EXON_MRNA	DYRK1A	ENSG00000157540.22	ENST00000647188.2:ENST00000647504.1:ENST00000338785.8:ENST00000646548.1	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.91991	2.01072	2.10153	0.0106036	0.00871844	0.0640636	0.0560911
chr7	135593054	135593123	8552755	0	+	0.521739	(0.49,0.53]	chr7	652741	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	5	23	2	1.99044	2.010545	2.03065	0.0435903	0.0189484	0.170594	0.0958835
chr1	32042816	32042913	125859	0	+	0.216495	[0,0.29]	chr1	15466	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	83	2	2.00971	2.010425	2.01114	7.25202e-4	5.01033e-4	0.00911622	0.00653592
chr20	44904967	44905049	17799135	0	+	0.463415	(0.455,0.49]	chr20	1504689	1	CDS	CDS:UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000479421.5:ENST00000353703.9:ENST00000372839.7:ENST00000631616.1:ENST00000633979.1:ENST00000477896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	40	2	1.88914	2.0099650000000002	2.13079	0.0127583	0.00422749	0.0719798	0.0329189
chr1	96679059	96679153	1185019	0	-	0.414894	(0.39,0.42]	chr1	116525	3	EXON_PSEUDO	EXON_PSEUDO	RPL7P9	ENSG00000137970.7	ENST00000468715.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	49	2	1.65176	2.009795	2.36783	0.0131984	9.23937e-4	0.0740172	0.0111585
chr2	135979273	135979366	2899050	0	-	0.408602	(0.39,0.42]	chr2	258658	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000441323.5:ENST00000456565.5:ENST00000449218.5:ENST00000435076.1:ENST00000463008.1:ENST00000474184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	49	2	1.65176	2.009795	2.36783	0.0131984	9.23937e-4	0.0740172	0.0111585
chr1	155727607	155727672	484476	0	+	0.446154	(0.42,0.455]	chr1	50975	1	CDS	CDS:EXON_MRNA	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5:ENST00000466384.5:ENST00000462978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	40	2	1.58973	2.009555	2.42938	0.0167864	0.0045028	0.0887424	0.0349711
chr12	67309985	67310070	12934109	0	+	0.341176	(0.33,0.36]	chr12	1008107	2	CDS	CDS:UTR3:EXON_MRNA	CAND1	ENSG00000111530.13	ENST00000545606.6:ENST00000540319.5:ENST00000544619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	23	2	2.00765	2.009375	2.0111	0.0287001	0.0124964	0.128757	0.071421
chr7	104671475	104671575	8445863	0	+	0.34	(0.33,0.36]	chr7	645154	20	INTRON	INTRON	LHFPL3	ENSG00000187416.13	ENST00000424859.7:ENST00000401970.3:ENST00000683240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	23	2	2.00765	2.009375	2.0111	0.0287001	0.0124964	0.128757	0.071421
chr9	73160802	73160893	10304691	0	+	0.395604	(0.39,0.42]	chr9	776028	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA1	ENSG00000135046.14	ENST00000257497.11:ENST00000456643.5:ENST00000376911.1:ENST00000495713.5:ENST00000489109.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	49	2	1.63008	2.009375	2.38867	0.0358647	4.20914e-4	0.147298	0.00571687
chr10	7802757	7802854	10916013	0	+	0.42268	(0.42,0.455]	chr10	831350	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	76	2	1.75395	2.00931	2.26467	0.00489312	4.17265e-4	0.0376595	0.00566841
chr1	224389335	224389434	1526432	0	-	0.343434	(0.33,0.36]	chr1	152610	43	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2:ENST00000486652.5:ENST00000678555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	39	2	1.70359	2.008595	2.3136	0.0245566	0.00110072	0.114841	0.0119958
chr17	35724280	35724377	16207505	0	+	0.412371	(0.39,0.42]	chr17	1309154	7	UTR3	UTR3:EXON_MRNA:INTRON	AP2B1:TAF15	ENSG00000006125.18:ENSG00000270647.6	ENST00000621914.4:ENST00000610402.5:ENST00000603067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	27	94	2	1.88148	2.00848	2.13548	9.3311e-4	8.02699e-4	0.0105624	0.00998346
chr9	120816929	120817027	10833858	0	-	0.367347	(0.36,0.39]	chr9	820467	10	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	17	58	2	1.8131	2.008425	2.20375	0.0083482	6.19446e-4	0.054565	0.00770815
chr1	167788120	167788220	524584	0	+	0.34	(0.33,0.36]	chr1	56285	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000367853.3:ENST00000403379.3:ENST00000498279.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	22	2	1.69981	2.00839	2.31697	0.0370662	0.00966431	0.145667	0.0606263
chr1	167788420	167788520	524587	0	+	0.34	(0.33,0.36]	chr1	56285	6	UTR3	UTR3:EXON_MRNA	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	22	2	1.69981	2.00839	2.31697	0.0370662	0.00966431	0.145667	0.0606263
chr20	5100599	5100694	17887645	0	-	0.357895	(0.33,0.36]	chr20	1514035	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	22	2	1.69981	2.00839	2.31697	0.0370662	0.00966431	0.145667	0.0606263
chr2	135709432	135709484	2082797	0	+	0.423077	(0.42,0.455]	chr2	195368	1	CDS	CDS:EXON_MRNA	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6:ENST00000445855.1	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.86513	2.00825	2.15137	0.0357107	0.0123864	0.147298	0.07101
chrM	14846	14940	19377284	0	+	0.553191	(0.53,0.59]	chrM	1649831	1	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	35	166	2	1.86055	2.00817	2.15579	0.00123187	1.29798e-4	0.0131109	0.00242629
chr11	63681540	63681636	11976068	0	+	0.583333	(0.53,0.59]	chr11	918325	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000542238.5:ENST00000538995.1:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000543123.1:ENST00000543552.5:ENST00000545432.5:ENST00000338850.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	134	2	1.45563	2.00816	2.56069	0.00887983	3.26247e-5	0.0567495	7.21944e-4
chrX	48957074	48957173	19064031	0	-	0.747475	(0.59,1]	chrX	1620661	2	CDS	CDS:EXON_MRNA:INTRON	OTUD5	ENSG00000068308.14	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000610466.4:ENST00000428668.2	protein_coding	protein_coding	protein_coding	protein_coding	6	50	2	1.77181	2.00789	2.24397	0.0267363	0.0206682	0.118611	0.0997234
chr16	70380210	70380309	15997877	0	-	0.565657	(0.53,0.59]	chr16	1284763	44	UTR3	UTR3:EXON_MRNA	ST3GAL2	ENSG00000157350.13	ENST00000342907.3:ENST00000393640.8	protein_coding	protein_coding	protein_coding	protein_coding	7	33	2	1.653	2.00772	2.36244	0.0274587	0.0131162	0.124024	0.073569
chr10	84560533	84560624	11167543	0	+	0.43956	(0.42,0.455]	chr10	848475	2	EXON_PSEUDO	EXON_PSEUDO	RPS3AP5	ENSG00000178429.9	ENST00000389400.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	41	2	1.68865	2.007635	2.32662	0.0276098	0.00161131	0.124664	0.01608
chr16	30069829	30069922	15628435	0	+	0.602151	(0.59,1]	chr16	1239797	1	CDS	CDS:UTR3:EXON_MRNA	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000564688.1:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	108	860	2	1.91137	2.00749	2.10361	3.74661e-4	1.79813e-4	0.00521162	0.00313847
chr7	127721343	127721400	8515640	0	+	0.614035	(0.59,1]	chr7	649712	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	96	2	1.78723	2.0072400000000004	2.22725	0.00823354	0.00535937	0.0534766	0.0406564
chr12	108647402	108647502	13530497	0	-	0.36	(0.33,0.36]	chr12	1063930	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5:ENST00000549384.5:ENST00000421578.6:ENST00000550542.5:ENST00000549772.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	45	2	1.82066	2.007105	2.19355	0.0051643	0.00302788	0.0381529	0.026885
chr22	21856525	21856625	18443327	0	-	0.33	(0.29,0.33]	chr22	1572552	483	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	1.55778	2.0068449999999998	2.45591	0.03577	0.00406506	0.147298	0.032143
chr6	67885869	67885969	7784119	0	-	0.44	(0.42,0.455]	chr6	596226	16	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	88	327	2	1.91438	2.00657	2.09876	1.43493e-4	3.38768e-5	0.00263027	7.46573e-4
chr12	6520985	6521047	12713440	0	+	0.548387	(0.53,0.59]	chr12	986558	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NCAPD2	ENSG00000010292.13	ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000542472.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	20	2	1.65775	2.00643	2.35511	0.0573191	0.0445399	0.196623	0.172163
chr5	142132276	142132342	6262542	0	+	0.530303	(0.53,0.59]	chr5	488690	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	NDFIP1	ENSG00000131507.11	ENST00000253814.6:ENST00000509436.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	20	2	1.65775	2.00643	2.35511	0.0573191	0.0445399	0.196623	0.172163
chrX	41348022	41348121	18669499	0	+	0.30303	(0.29,0.33]	chrX	1592243	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1:ENST00000611968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	39	2	1.55778	2.00637	2.45496	0.03577	5.12753e-4	0.147298	0.00665221
chrX	107650642	107650742	18813956	0	+	0.43	(0.42,0.455]	chrX	1603306	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PRPS1	ENSG00000147224.13	ENST00000643795.2:ENST00000372435.10:ENST00000644642.1:ENST00000675875.1:ENST00000372428.9:ENST00000675263.1:ENST00000676322.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	38	2	1.53822	2.006005	2.47379	0.0171269	0.00996858	0.0904701	0.0621728
chr5	138467509	138467604	6244789	0	+	0.642105	(0.59,1]	chr5	486656	9	CDS	CDS:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.89227	2.005605	2.11894	0.0293157	0.012536	0.128478	0.0714812
chr4	98880832	98880929	5547681	0	-	0.28866000000000003	[0,0.29]	chr4	443076	17	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	67	2	1.67789	2.005495	2.3331	0.0213728	7.62128e-5	0.102744	0.00145122
chr8	144095930	144096029	9650292	0	+	0.636364	(0.59,1]	chr8	731509	2	CDS	CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5:ENST00000528618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	56	2	1.70472	2.0054749999999997	2.30623	0.0236159	0.0170607	0.109018	0.0896731
chr5	33162627	33162717	5926665	0	+	0.5	(0.49,0.53]	chr5	464307	6	EXON_PSEUDO	EXON_PSEUDO	RP11-36C20.1	ENSG00000240376.1	ENST00000467270.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	53	2	1.85272	2.005455	2.15819	0.0211739	0.00108039	0.101864	0.0118355
chr11	75566349	75566449	12023325	0	+	0.69	(0.59,1]	chr11	927006	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERPINH1	ENSG00000149257.16	ENST00000533603.5:ENST00000526242.1:ENST00000649490.1:ENST00000526397.5:ENST00000358171.8:ENST00000530284.5:ENST00000525492.5:ENST00000529643.1:ENST00000532356.5:ENST00000524558.5:ENST00000533449.6:ENST00000528990.1:ENST00000525611.5:ENST00000528760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	58	2	1.81952	2.00502	2.19052	0.0237927	0.0162925	0.109413	0.0867467
chr1	19121188	19121270	876097	0	-	0.414634	(0.39,0.42]	chr1	90060	1	CDS	CDS:EXON_MRNA	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.99911	2.00496	2.01081	0.0477207	0.0207537	0.17993	0.100574
chr1	202727574	202727671	1451700	0	-	0.402062	(0.39,0.42]	chr1	145774	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	36	2	1.89145	2.004835	2.11822	0.0119663	0.005418	0.0700178	0.0409315
chr13	81689910	81690006	13802206	0	+	0.666667	(0.59,1]	chr13	1085685	1	EXON_LNCRNA	EXON_LNCRNA	PTMAP5	ENSG00000214182.5	ENST00000607242.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	44	2	1.96394	2.00457	2.0452	0.0453144	0.0179494	0.174798	0.0939469
chrX	154357433	154357528	19278061	0	-	0.642105	(0.59,1]	chrX	1638295	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	60	2	1.96265	2.00435	2.04605	0.0238491	0.0103872	0.112466	0.0640167
chr5	179623036	179623133	7002162	0	-	0.56701	(0.53,0.59]	chr5	536290	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	HNRNPH1	ENSG00000169045.17	ENST00000393432.8:ENST00000356731.9:ENST00000442819.6:ENST00000514332.5:ENST00000510411.5:ENST00000510678.5:ENST00000329433.10:ENST00000514731.5:ENST00000503105.5:ENST00000504779.6:ENST00000508103.5:ENST00000506721.5:ENST00000523137.5:ENST00000505811.5:ENST00000510431.5:ENST00000519056.5:ENST00000504348.5:ENST00000513225.5:ENST00000524180.5:ENST00000513972.5:ENST00000519707.5:ENST00000519455.5:ENST00000515158.5:ENST00000521116.5:ENST00000505087.1:ENST00000515714.5:ENST00000512273.5:ENST00000503664.1:ENST00000630639.1:ENST00000515446.1:ENST00000513230.1:ENST00000522256.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	20	91	2	1.46252	2.00418	2.54584	0.0133725	1.59239e-4	0.0743429	0.00286408
chr2	26212569	26212626	2565865	0	-	0.473684	(0.455,0.49]	chr2	230593	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646031.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	21	2	1.95898	2.003725	2.04847	0.047107	0.0192065	0.172269	0.0943643
chr6	136278502	136278593	7982508	0	-	0.472527	(0.455,0.49]	chr6	610361	8	CDS	CDS:EXON_MRNA	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	1.95898	2.003725	2.04847	0.047107	0.0192065	0.172269	0.0943643
chr1	152032583	152032661	1295111	0	-	0.602564	(0.59,1]	chr1	129726	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	S100A11	ENSG00000163191.6	ENST00000478109.1:ENST00000271638.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	77	2	1.83139	2.00364	2.17589	0.0225	0.00389949	0.106723	0.0313218
chr1	631748	631844	486	0	+	0.416667	(0.39,0.42]	chr1	106	8	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	45	142	2	1.24272	2.00354	2.76436	0.0140181	3.24057e-6	0.07682	1.07746e-4
chr9	33174169	33174232	10233824	0	+	0.47619	(0.455,0.49]	chr9	769295	1	EXON_SMALL	EXON_SMALL:INTRON	B4GALT1-AS1:RNU4ATAC15P	ENSG00000233554.6:ENSG00000252224.1	ENST00000654325.1:ENST00000426270.5:ENST00000442432.2:ENST00000516415.1	snRNA	snRNA	snRNA:lncRNA	snRNA:lncRNA	6	23	2	1.70534	2.003365	2.30139	0.0530131	0.0239221	0.195536	0.109927
chrX	75073867	75073956	19119925	0	-	0.47191	(0.455,0.49]	chrX	1626425	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ABCB7	ENSG00000131269.19	ENST00000373394.8:ENST00000253577.9:ENST00000666534.1:ENST00000669573.1:ENST00000644766.1:ENST00000339447.8:ENST00000645829.3:ENST00000620875.5:ENST00000663420.1:ENST00000529949.5:ENST00000669388.1:ENST00000534570.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	23	2	1.70534	2.003365	2.30139	0.0530131	0.0239221	0.195536	0.109927
chr6	132769469	132769569	7965469	0	-	0.37	(0.36,0.39]	chr6	609155	2	UTR3	UTR3:EXON_MRNA	SLC18B1	ENSG00000146409.12	ENST00000275227.9:ENST00000647932.1:ENST00000650278.1:ENST00000650136.1:ENST00000650298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	35	2	1.94692	2.0033250000000002	2.05973	0.0192083	0.0039268	0.0943643	0.031494
chr14	101765861	101765960	14493249	0	+	0.494949	(0.49,0.53]	chr14	1132783	7	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000557268.5:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	59	2	1.53791	2.003185	2.46846	0.0209293	4.21053e-4	0.100962	0.00571742
chr2	61876985	61877052	2691420	0	-	0.477612	(0.455,0.49]	chr2	240561	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2:ENST00000461540.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	23	100	2	1.37469	2.00305	2.63141	0.0259657	1.27859e-5	0.118976	3.36559e-4
chr3	152462883	152462983	3818507	0	+	0.35	(0.33,0.36]	chr3	325707	6	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	58	2	1.93386	2.0028449999999998	2.07183	0.00373558	0.00150045	0.0312668	0.0152367
chr19	58549410	58549490	17413350	0	+	0.7	(0.59,1]	chr19	1451212	2	CDS	CDS:EXON_MRNA	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595028.1:ENST00000595974.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	96	2	1.33419	2.0024949999999997	2.6708	0.0433905	7.61526e-4	0.162376	0.00950874
chr15	34536754	34536843	15205717	0	-	0.325843	(0.29,0.33]	chr15	1197108	4	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	22	2	1.86069	2.002475	2.14426	0.021654	0.0142448	0.103926	0.077929
chr10	117279071	117279171	11711062	0	-	0.37	(0.36,0.39]	chr10	893463	19	UTR3	UTR3:EXON_MRNA	PDZD8	ENSG00000165650.12	ENST00000334464.7	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	1.54838	2.00247	2.45656	0.038399	0.0100637	0.15648	0.0624019
chr10	43387688	43387784	11461770	0	-	0.510417	(0.49,0.53]	chr10	873955	11	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	43	2	1.41373	2.00233	2.59093	0.0487081	7.86196e-4	0.183028	0.00929193
chr3	5180233	5180330	3278261	0	+	0.340206	(0.33,0.36]	chr3	288772	16	UTR3	UTR3:EXON_MRNA	ARL8B	ENSG00000134108.14	ENST00000256496.8	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.36994	2.00225	2.63456	0.0479853	0.00707461	0.17535800000000001	0.0478528
chr10	119168194	119168289	11717944	0	-	0.378947	(0.36,0.39]	chr10	893951	6	UTR3	UTR3:EXON_MRNA	PRDX3	ENSG00000165672.7	ENST00000298510.4:ENST00000494433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	20	2	1.66836	2.00218	2.336	0.0474647	0.0154226	0.17993	0.0834369
chr8	47773206	47773303	9815454	0	-	0.515464	(0.49,0.53]	chr8	742453	2	UTR3	UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7	protein_coding	protein_coding	protein_coding	protein_coding	16	54	2	1.33928	2.001835	2.66439	0.0231749	0.00134122	0.10969	0.0139818
chr3	185918364	185918438	4628265	0	-	0.486486	(0.455,0.49]	chr3	382248	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	39	2	1.82729	2.001805	2.17632	0.0107306	0.00634339	0.0652734	0.0446708
chr6	85615243	85615341	7825802	0	-	0.479592	(0.455,0.49]	chr6	599563	5	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1:ENST00000676542.1:ENST00000677059.1:ENST00000444272.2:ENST00000678899.1:ENST00000369622.8:ENST00000678355.1:ENST00000676688.1:ENST00000677514.1:ENST00000678816.1:ENST00000678930.1:ENST00000678589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	39	2	1.82729	2.001805	2.17632	0.0107306	0.00634339	0.0652734	0.0446708
chr3	38253289	38253389	3420119	0	+	0.35	(0.33,0.36]	chr3	297237	5	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	7	20	2	1.48471	2.00179	2.51887	0.0406322	0.0358636	0.153743	0.147298
chr5	131643693	131643792	6829700	0	-	0.393939	(0.39,0.42]	chr5	522306	21	UTR3	UTR3:EXON_MRNA:INTRON	CTC-432M15.3:FNIP1	ENSG00000273217.1:ENSG00000217128.12	ENST00000514667.1:ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000615660.4	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.98676	2.0017650000000002	2.01677	0.0439902	0.0235818	0.163596	0.111323
chr1	35602873	35602971	938332	0	-	0.27551	[0,0.29]	chr1	98692	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	37	2	1.23964	2.001605	2.76357	0.051893	3.52333e-4	0.193787	0.00493767
chr17	18208785	18208882	16150146	0	+	0.515464	(0.49,0.53]	chr17	1301927	5	UTR3	UTR3:EXON_MRNA	ALKBH5	ENSG00000091542.9	ENST00000541285.1:ENST00000399138.5:ENST00000490106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	43	2	1.94299	2.001515	2.06004	0.0152714	0.00373365	0.0828908	0.0303255
chr7	12380485	12380567	8683483	0	-	0.451219	(0.42,0.455]	chr7	664048	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4:ENST00000326715.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	43	2	1.93075	2.001195	2.07164	0.0101168	0.0048704	0.0626311	0.0366486
chr5	93683298	93683390	6701889	0	-	0.434783	(0.42,0.455]	chr5	516399	6	EXON_PSEUDO	EXON_PSEUDO:INTRON	FAM172A:NPM1P27	ENSG00000113391.19:ENSG00000249353.2	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000502784.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	19	72	2	1.60931	2.001185	2.39306	0.00981873	2.67192e-4	0.0614916	0.0039871
chr3	52255320	52255418	4182608	0	-	0.428571	(0.42,0.455]	chr3	352627	10	UTR3	UTR3:EXON_MRNA	WDR82	ENSG00000164091.12	ENST00000296490.8:ENST00000487402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	1.7601	2.000835	2.24157	0.0312663	0.0087798	0.132093	0.0562439
chr3	49015188	49015288	3459298	0	+	0.57	(0.53,0.59]	chr3	301944	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	WDR6	ENSG00000178252.18	ENST00000395474.7:ENST00000610967.4:ENST00000608424.6:ENST00000415265.6:ENST00000452875.5:ENST00000471162.5:ENST00000420783.7:ENST00000448293.5:ENST00000615452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	26	2	1.49715	2.00081	2.50447	0.0455868	0.0301162	0.175638	0.130016
chr11	61799824	61799924	12405899	0	-	0.4	(0.39,0.42]	chr11	960580	3	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	23	79	2	1.83326	2.000785	2.16831	0.00253015	5.01792e-4	0.0227254	0.00703098
chr22	29286922	29286992	18336592	0	+	0.485714	(0.455,0.49]	chr22	1558179	1	CDS	CDS:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	63	2	1.94735	2.000525	2.0537	0.00680997	0.00111025	0.0465162	0.0120981
chr18	9399726	9399826	16753329	0	+	0.39	(0.36,0.39]	chr18	1381535	3	UTR3	UTR3:EXON_MRNA	TWSG1	ENSG00000128791.12	ENST00000583147.5:ENST00000262120.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	17	2	1.61529	2.000465	2.38564	0.0476159	0.0466766	0.17993	0.171348
chr18	32411813	32411913	17064952	0	-	0.37	(0.36,0.39]	chr18	1402365	184	INTRON	INTRON	GAREM1	ENSG00000141441.16	ENST00000269209.7:ENST00000399218.8	protein_coding	protein_coding	protein_coding	protein_coding	10	32	2	1.67408	2.0004299999999997	2.32678	0.0193538	0.0122872	0.0943643	0.0706588
chr17	22204086	22204183	16168812	0	+	0.474227	(0.455,0.49]	chr17	1304328	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	5	21	2	1.8708	2.00037	2.12994	0.0324007	0.0304832	0.134751	0.130204
chr5	140497183	140497278	6254786	0	+	0.484211	(0.455,0.49]	chr5	487556	8	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ANKHD1:ANKHD1-EIF4EBP3	ENSG00000131503.21:ENSG00000254996.5	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000532219.5:ENST00000246149.10:ENST00000412116.5:ENST00000462121.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	21	2	1.8708	2.00037	2.12994	0.0324007	0.0304832	0.134751	0.130204
chr20	47210368	47210464	17993111	0	-	0.21875	[0,0.29]	chr20	1524924	13	UTR3	UTR3:EXON_MRNA	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6	protein_coding	protein_coding	protein_coding	protein_coding	12	30	2	1.72784	2.00008	2.27232	0.0182267	0.00296574	0.0945306	0.0263871
chr10	69369236	69369336	11096518	0	+	0.53	(0.49,0.53]	chr10	843755	1	CDS	CDS:UTR3:EXON_MRNA	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000643399.2:ENST00000298649.8:ENST00000359426.7:ENST00000493591.6:ENST00000494253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	27	2	1.78308	2.00005	2.21702	0.0425234	0.00959574	0.167547	0.0603269
chr1	65633267	65633365	253653	0	+	0.265306	[0,0.29]	chr1	28907	2	UTR3	UTR3:EXON_MRNA:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	6	16	2	1.5959700000000001	1.9999600000000002	2.40395	0.0533838	0.0210081	0.184995	0.101116
chr6	35833646	35833744	7677916	0	-	0.408163	(0.39,0.42]	chr6	588535	8	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	46	2	1.90567	1.9996749999999999	2.09368	0.0065841	0.00324532	0.0454205	0.0271838
chr16	1962470	1962570	15823815	0	-	0.61	(0.59,1]	chr16	1261856	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	47	371	2	1.87212	1.99965	2.12718	8.9778e-4	4.55706e-4	0.0102618	0.00645757
chr4	25217607	25217707	4759920	0	+	0.45	(0.42,0.455]	chr4	393674	163	INTRON	INTRON	PI4K2B	ENSG00000038210.14	ENST00000512921.4	protein_coding	protein_coding	protein_coding	protein_coding	6	25	2	1.96397	1.9996450000000001	2.03532	0.040947	0.0138503	0.163285	0.0759947
chr12	124786349	124786426	13600229	0	-	0.636364	(0.59,1]	chr12	1071681	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000681555.1:ENST00000681788.1:ENST00000415380.6:ENST00000681117.1:ENST00000681499.1:ENST00000545305.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000679955.1:ENST00000544327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	105	2	1.76107	1.9993400000000001	2.23761	0.00916923	0.00314845	0.0580029	0.0277515
chr16	29803528	29803608	15626738	0	+	0.5625	(0.53,0.59]	chr16	1239293	2	CDS	CDS:EXON_MRNA	KIF22	ENSG00000079616.13	ENST00000561482.5:ENST00000160827.9:ENST00000400751.9:ENST00000569382.2:ENST00000565736.1:ENST00000568312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	37	2	1.72707	1.9990999999999999	2.27113	0.0178853	0.015378	0.0918323	0.0833184
chr1	220011000	220011056	1511112	0	-	0.446429	(0.42,0.455]	chr1	151060	2	CDS	CDS:UTR3:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	47	2	1.58516	1.99899	2.41282	0.0389398	5.84644e-4	0.158547	0.00740531
chr5	175526637	175526734	6397790	0	+	0.474227	(0.455,0.49]	chr5	496825	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SFXN1	ENSG00000164466.13	ENST00000321442.10:ENST00000421887.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	1.72305	1.9989849999999998	2.27492	0.0324537	0.0193827	0.134899	0.0943643
chr20	34280937	34281033	17946664	0	-	0.572917	(0.53,0.59]	chr20	1519947	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP4-785G19.5:AHCY	ENSG00000250917.1:ENSG00000101444.13	ENST00000512005.1:ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	12	63	2	1.4107	1.998945	2.58719	0.046906	2.07067e-4	0.179138	0.00324727
chr12	29392743	29392842	12810675	0	+	0.383838	(0.36,0.39]	chr12	994754	36	EXON_LNCRNA	EXON_LNCRNA:INTRON	OVCH1-AS1	ENSG00000257599.3	ENST00000641955.1:ENST00000551108.1:ENST00000550906.2	lncRNA	lncRNA	lncRNA	lncRNA	13	43	2	1.47979	1.9989299999999999	2.51807	0.0319856	5.95527e-4	0.135058	0.00746617
chrX	48913655	48913750	19063605	0	-	0.463158	(0.455,0.49]	chrX	1620588	6	UTR3	UTR3:EXON_MRNA	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	24	91	2	1.97336	1.99845	2.02354	0.00138267	8.04523e-4	0.0149237	0.00945413
chr1	167541110	167541209	1347827	0	-	0.373737	(0.36,0.39]	chr1	137992	2	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	13	46	2	1.94692	1.998265	2.04961	0.0192083	0.00151466	0.0943643	0.0153687
chr1	212309237	212309330	1481074	0	-	0.473118	(0.455,0.49]	chr1	149494	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-384C4.7:RPL23AP18	ENSG00000234915.1:ENSG00000225338.1	ENST00000442146.1:ENST00000416139.1	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	11	46	2	1.80094	1.99817	2.1954	0.0265942	0.00127219	0.120205	0.0135105
chr22	38683841	38683939	18367288	0	+	0.306122	(0.29,0.33]	chr22	1562625	1	UTR3	UTR3:EXON_MRNA	TOMM22	ENSG00000100216.6	ENST00000216034.6:ENST00000492561.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	23	2	1.99403	1.99802	2.00201	0.0202925	0.0134564	0.098158	0.0744942
chr12	29392249	29392348	12810670	0	+	0.292929	(0.29,0.33]	chr12	994754	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	OVCH1-AS1	ENSG00000257599.3	ENST00000641955.1:ENST00000551108.1:ENST00000550906.2	lncRNA	lncRNA	lncRNA	lncRNA	9	25	2	1.99395	1.9979799999999999	2.00201	0.0134564	0.0131526	0.0744942	0.0733631
chr9	131150615	131150690	10495872	0	+	0.453333	(0.42,0.455]	chr9	793266	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000525980.5:ENST00000530630.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	39	2	1.54634	1.9978799999999999	2.44942	0.0338074	0.0016479	0.141431	0.0163521
chr21	8444760	8444860	18041992	0	+	0.53	(0.49,0.53]	chr21	1530902	49	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	2211	8702	2	1.99653	1.99783	1.99913	1.5223e-5	1.37804e-5	3.94404e-4	3.89001e-4
chr12	103932333	103932376	13056748	0	+	0.44186	(0.42,0.455]	chr12	1017300	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	HSP90B1	ENSG00000166598.16	ENST00000549334.5:ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680762.1:ENST00000680663.1:ENST00000681172.1:ENST00000640977.2:ENST00000540297.7:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000679377.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000680242.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	121	2	1.55768	1.99776	2.43784	0.0123956	1.9373e-5	0.070731	4.72961e-4
chr18	3253247	3253347	16729709	0	+	0.46	(0.455,0.49]	chr18	1380089	1	CDS_START	CDS_START:CDS:EXON_MRNA	MYL12A	ENSG00000101608.13	ENST00000579226.5:ENST00000217652.8:ENST00000580353.1:ENST00000578611.5:ENST00000583449.1:ENST00000578562.6:ENST00000536605.1:ENST00000580887.5:ENST00000577510.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	37	2	1.61991	1.997715	2.37552	0.0447186	0.00134626	0.166115	0.0145759
chr6	31794830	31794925	7662581	0	-	0.652632	(0.59,1]	chr6	585344	1	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000440048.1	protein_coding	protein_coding	protein_coding	protein_coding	6	51	2	1.87624	1.9975899999999998	2.11894	0.0293157	0.0194045	0.128478	0.0944333
chr1	33009234	33009333	924413	0	-	0.373737	(0.36,0.39]	chr1	97512	14	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11	protein_coding	protein_coding	protein_coding	protein_coding	9	29	2	1.57368	1.99741	2.42114	0.0292762	0.00564641	0.128453	0.0422191
chr16	20736294	20736391	15883328	0	-	0.360825	(0.36,0.39]	chr16	1270412	28	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THUMPD1	ENSG00000066654.14	ENST00000636554.1:ENST00000381337.6:ENST00000396083.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	29	2	1.57368	1.99741	2.42114	0.0292762	0.00564641	0.128453	0.0422191
chr7	150952424	150952509	9128681	0	-	0.6	(0.59,1]	chr7	697478	1	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2:ENST00000684116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	128	2	1.8214	1.9970499999999998	2.1727	0.00495252	0.00282242	0.0368151	0.0252053
chr1	96446929	96447028	366396	0	+	0.464646	(0.455,0.49]	chr1	35865	1	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	50	198	2	1.78925	1.997005	2.20476	0.00134152	2.79637e-5	0.0145351	6.40159e-4
chr6	67888647	67888746	7784147	0	-	0.565657	(0.53,0.59]	chr6	596229	18	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	67	308	2	1.81294	1.9969450000000002	2.18095	4.44015e-4	4.09714e-5	0.00633013	8.78776e-4
chr11	121307711	121307811	12176662	0	+	0.36	(0.33,0.36]	chr11	939028	3	UTR3	UTR3:EXON_MRNA	SC5D	ENSG00000109929.10	ENST00000264027.9:ENST00000534230.5:ENST00000392789.2:ENST00000527183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	20	2	1.82394	1.996945	2.16995	0.0494504	0.0124739	0.18557	0.0713206
chr2	197497139	197497216	3106878	0	-	0.480519	(0.455,0.49]	chr2	274669	1	CDS	CDS:UTR3:EXON_MRNA	HSPD1	ENSG00000144381.18	ENST00000388968.8:ENST00000426480.2:ENST00000345042.6:ENST00000452200.6:ENST00000679291.1:ENST00000677403.1:ENST00000678621.1:ENST00000678545.1:ENST00000676933.1:ENST00000678170.1:ENST00000476746.6:ENST00000678969.1:ENST00000428204.6:ENST00000418022.2:ENST00000439605.2:ENST00000440114.2:ENST00000461097.2:ENST00000677792.1:ENST00000678761.1:ENST00000677913.1:ENST00000677454.1:ENST00000486181.5:ENST00000430176.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	37	2	1.51376	1.996905	2.48005	0.0475178	0.00142356	0.17993	0.0146333
chr1	186343399	186343473	1412040	0	-	0.418919	(0.39,0.42]	chr1	142886	2	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9:ENST00000481347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	39	2	1.961	1.9966949999999999	2.03239	0.00719538	0.00663814	0.0486209	0.046176300000000003
chr3	184183616	184183711	3948255	0	+	0.673684	(0.59,1]	chr3	332048	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	AP2M1	ENSG00000161203.13	ENST00000382456.7:ENST00000292807.9:ENST00000411763.6:ENST00000439647.5:ENST00000461733.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	60	2	1.99004	1.996505	2.00297	0.0214639	0.0125191	0.102904	0.0713905
chr12	98548356	98548456	13036869	0	+	0.32	(0.29,0.33]	chr12	1014988	6	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6	protein_coding	protein_coding	protein_coding	protein_coding	14	38	2	1.81695	1.99649	2.17603	0.0105563	0.00239061	0.0637867	0.0217482
chr22	41867019	41867106	18383532	0	+	0.586207	(0.53,0.59]	chr22	1564987	2	CDS	CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	73	2	1.79281	1.99628	2.19975	0.00367327	0.00293564	0.0300844	0.0261315
chr9	86423032	86423128	10718838	0	-	0.322917	(0.29,0.33]	chr9	811188	2	EXON_SMALL	EXON_SMALL	RNU2-36P	ENSG00000222293.1	ENST00000410361.1	snRNA	snRNA	snRNA	snRNA	93	295	2	1.06233	1.99614	2.92995	0.0261813	1.46644e-8	0.119206	1.07821e-6
chr9	131192207	131192292	10496306	0	+	0.494118	(0.49,0.53]	chr9	793339	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000525980.5:ENST00000526346.5:ENST00000531929.5:ENST00000651334.1:ENST00000524578.5:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000528114.1:ENST00000525384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	100	2	1.86982	1.996	2.12218	0.00129203	7.46726e-4	0.0136936	0.00933511
chr19	49489783	49489849	17370735	0	+	0.515152	(0.49,0.53]	chr19	1443110	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	36	2	1.47513	1.99592	2.51671	0.0265702	0.00768763	0.12016400000000001	0.050396
chr7	108510325	108510418	8457614	0	+	0.419355	(0.39,0.42]	chr7	646341	2	EXON_PSEUDO	EXON_PSEUDO	RPL7P32	ENSG00000231006.1	ENST00000457119.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	23	2	1.4947	1.995855	2.49701	0.0374865	0.0339607	0.147062	0.141431
chr11	65855050	65855145	12423155	0	-	0.547368	(0.53,0.59]	chr11	964155	5	UTR3	UTR3:EXON_MRNA:INTRON	CFL1	ENSG00000172757.13	ENST00000527752.1:ENST00000308162.10:ENST00000525451.6:ENST00000530945.1:ENST00000527344.5:ENST00000531407.5:ENST00000524553.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	113	2	1.91428	1.9955249999999998	2.07677	0.00193966	5.19331e-4	0.0185233	0.00724998
chr1	23310354	23310453	894706	0	-	0.323232	(0.29,0.33]	chr1	92818	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	50	2	1.5621	1.995325	2.42855	0.0240763	2.32642e-4	0.113253	0.00355641
chr4	176330287	176330385	5242244	0	+	0.428571	(0.42,0.455]	chr4	421869	21	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	10	39	2	1.91899	1.995315	2.07164	0.0101168	0.00718351	0.0626311	0.0482184
chr12	120159824	120159923	13579349	0	-	0.575758	(0.53,0.59]	chr12	1068683	1	CDS	CDS:EXON_MRNA	GCN1	ENSG00000089154.11	ENST00000300648.7:ENST00000547369.5:ENST00000550471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	31	2	1.33144	1.99519	2.65894	0.0496669	0.0193255	0.178721	0.0943643
chr7	157191277	157191376	8635967	0	+	0.454545	(0.42,0.455]	chr7	659694	21	INTRON	INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10	protein_coding	protein_coding	protein_coding	protein_coding	8	28	2	1.44978	1.9951050000000001	2.54043	0.0463803	0.00705852	0.177188	0.047732
chr2	61498732	61498792	2690567	0	-	0.383333	(0.36,0.39]	chr2	240383	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000475744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	53	2	1.8918	1.9948299999999999	2.09786	0.00658605	0.00225356	0.0454205	0.020836
chr16	28842880	28842974	15907754	0	-	0.595745	(0.59,1]	chr16	1273881	6	UTR3	UTR3:EXON_MRNA	TUFM	ENSG00000178952.11	ENST00000313511.8:ENST00000569217.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	43	2	1.81066	1.994775	2.17889	0.0369806	0.025085	0.145401	0.116848
chr12	76067473	76067570	13424074	0	-	0.298969	(0.29,0.33]	chr12	1056669	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000551524.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	15	2	1.74619	1.994225	2.24226	0.0509174	0.0306054	0.181793	0.130226
chr3	149071582	149071657	4509493	0	-	0.306667	(0.29,0.33]	chr3	374258	1	CDS	CDS:EXON_MRNA	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5	protein_coding	protein_coding	protein_coding	protein_coding	5	15	2	1.74619	1.994225	2.24226	0.0509174	0.0306054	0.181793	0.130226
chr12	6536919	6537010	12713610	0	+	0.604396	(0.59,1]	chr12	986656	1	CDS	CDS:EXON_MRNA	GAPDH	ENSG00000111640.15	ENST00000229239.10:ENST00000396856.5:ENST00000492719.5:ENST00000396861.5:ENST00000474249.5:ENST00000396859.5:ENST00000466588.5:ENST00000466525.1:ENST00000396858.5:ENST00000619601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	56	442	2	1.83301	1.993985	2.15496	9.80104e-4	2.74135e-4	0.0109593	0.0044168
chr1	220020143	220020221	1511209	0	-	0.435897	(0.42,0.455]	chr1	151080	3	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	90	2	1.76418	1.993935	2.22369	0.008761	1.59051e-4	0.0560797	0.00263091
chr12	110536836	110536936	13537944	0	-	0.44	(0.42,0.455]	chr12	1064999	37	UTR3	UTR3:EXON_MRNA	PPTC7	ENSG00000196850.6	ENST00000354300.5:ENST00000548721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	21	2	1.95205	1.9936850000000002	2.03532	0.040947	0.0248244	0.163285	0.113644
chr2	200853902	200853993	3119946	0	-	0.428571	(0.42,0.455]	chr2	275287	1	CDS	CDS:UTR3:EXON_MRNA	CLK1	ENSG00000013441.16	ENST00000621181.4:ENST00000321356.9:ENST00000461981.5:ENST00000464454.1:ENST00000473565.5:ENST00000432425.5:ENST00000472679.1:ENST00000409769.6:ENST00000409403.6:ENST00000434813.3:ENST00000461326.1:ENST00000496205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	21	2	1.95205	1.9936850000000002	2.03532	0.040947	0.0248244	0.163285	0.113644
chr6	30625697	30625797	7111732	0	+	0.62	(0.59,1]	chr6	544931	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	MRPS18B	ENSG00000204568.12	ENST00000259873.5:ENST00000472267.5:ENST00000472229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	43	2	1.72824	1.99348	2.25872	0.0471232	0.0193473	0.179872	0.0969537
chr7	157384866	157384937	8637288	0	+	0.478873	(0.455,0.49]	chr7	659847	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	DNAJB6	ENSG00000105993.15	ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	34	2	1.47423	1.99342	2.51261	0.0418992	0.00280343	0.166188	0.0242354
chr1	175007097	175007197	559243	0	+	0.36	(0.33,0.36]	chr1	58831	1	CDS	CDS:EXON_MRNA	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000367679.7:ENST00000473925.1:ENST00000405362.1:ENST00000469173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	16	2	1.97842	1.993035	2.00765	0.0469469	0.0287001	0.171977	0.128757
chr12	68689547	68689619	12939740	0	+	0.402778	(0.39,0.42]	chr12	1008367	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	NUP107	ENSG00000111581.10	ENST00000378905.6:ENST00000540453.5:ENST00000229179.9:ENST00000535333.5:ENST00000537598.5:ENST00000535718.5:ENST00000539906.5:ENST00000538549.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	16	2	1.98676	1.9929350000000001	1.99911	0.0477207	0.0439902	0.17993	0.163596
chr12	93502913	93503013	13019600	0	+	0.4	(0.39,0.42]	chr12	1013494	18	UTR3	UTR3:EXON_MRNA	MRPL42	ENSG00000198015.14	ENST00000549982.6:ENST00000552217.6	protein_coding	protein_coding	protein_coding	protein_coding	4	16	2	1.98676	1.9929350000000001	1.99911	0.0477207	0.0439902	0.17993	0.163596
chr5	134606850	134606949	6846379	0	-	0.393939	(0.39,0.42]	chr5	523854	59	UTR3	UTR3:EXON_MRNA	SAR1B	ENSG00000152700.14	ENST00000402673.7:ENST00000507419.5:ENST00000508363.5:ENST00000502539.5:ENST00000439578.5:ENST00000509937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	16	2	1.98676	1.9929350000000001	1.99911	0.0477207	0.0439902	0.17993	0.163596
chr1	17408118	17408215	874011	0	-	0.618557	(0.59,1]	chr1	89600	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	91	2	1.87317	1.992925	2.11268	0.00983401	0.00509302	0.0615818	0.0376359
chr12	110281307	110281403	13085234	0	+	0.833333	(0.59,1]	chr12	1020453	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000552636.2:ENST00000308664.10:ENST00000539276.7:ENST00000377685.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	68	2	1.59965	1.992895	2.38614	0.0213848	0.0128707	0.102792	0.0725185
chr22	36520575	36520631	18499698	0	-	0.446429	(0.42,0.455]	chr22	1578446	1	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.78888	1.99281	2.19674	0.0259111	0.0254904	0.117089	0.117079
chr1	26942870	26942967	111985	0	+	0.649485	(0.59,1]	chr1	13502	1	CDS	CDS:EXON_MRNA	NUDC	ENSG00000090273.14	ENST00000321265.10	protein_coding	protein_coding	protein_coding	protein_coding	7	59	2	1.86913	1.992775	2.11642	0.0194297	0.0144884	0.0973387	0.0790431
chr1	179865076	179865176	1394844	0	-	0.4	(0.39,0.42]	chr1	141317	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	TOR1AIP2	ENSG00000169905.13	ENST00000367612.7:ENST00000609928.6:ENST00000482587.5:ENST00000495650.1	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.87119	1.9925899999999999	2.11399	0.0373134	0.014455	0.152293	0.0787564
chr7	138554786	138554876	8563238	0	+	0.455556	(0.455,0.49]	chr7	653267	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5:ENST00000493595.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	51	2	1.87851	1.992545	2.10658	0.0092042	0.00204602	0.0583232	0.0193107
chr21	14485813	14485911	18163801	0	-	0.326531	(0.29,0.33]	chr21	1542428	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	34	2	1.80634	1.992445	2.17855	0.0183673	0.00574816	0.0928041	0.0417823
chr14	102015180	102015256	14495494	0	+	0.565789	(0.53,0.59]	chr14	1133112	2	CDS	CDS:UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000680808.1:ENST00000681311.1:ENST00000681859.1:ENST00000645114.2:ENST00000643764.1:ENST00000644206.1:ENST00000647366.1:ENST00000643279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	33	2	1.72504	1.9923199999999999	2.2596	0.0213174	0.0185443	0.102501	0.0948733
chr19	11102663	11102724	17229989	0	+	0.606557	(0.59,1]	chr19	1419550	1	CDS	CDS:EXON_MRNA:INTRON	LDLR	ENSG00000130164.14	ENST00000557933.5:ENST00000558518.6:ENST00000545707.5:ENST00000535915.5:ENST00000455727.6:ENST00000557958.1:ENST00000558013.5:ENST00000252444.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	85	2	1.74696	1.992285	2.23761	0.0204559	0.00314845	0.0992616	0.0277515
chr19	12924722	12924807	17472074	0	-	0.588235	(0.53,0.59]	chr19	1463339	2	CDS	CDS:UTR3:EXON_MRNA	FARSA	ENSG00000179115.11	ENST00000588025.5:ENST00000314606.9:ENST00000423140.6:ENST00000586146.5:ENST00000588965.5:ENST00000587488.5:ENST00000593021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	35	2	1.61377	1.9918399999999998	2.36991	0.0436338	0.00501452	0.170594	0.0370872
chr12	98548157	98548256	13036867	0	+	0.292929	(0.29,0.33]	chr12	1014988	4	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6	protein_coding	protein_coding	protein_coding	protein_coding	24	66	2	1.70227	1.991805	2.28134	0.0069546	2.233e-4	0.0474451	0.00344226
chr10	60784782	60784861	11063588	0	+	0.405063	(0.39,0.42]	chr10	841933	2	CDS	CDS:EXON_MRNA	CDK1	ENSG00000170312.16	ENST00000519078.6:ENST00000475504.6:ENST00000316629.8:ENST00000395284.8:ENST00000448257.6:ENST00000614696.4:ENST00000373809.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	46	2	1.40101	1.9916550000000002	2.5823	0.0199737	0.00246531	0.0984041	0.0230262
chr7	5606458	5606556	8112132	0	+	0.734694	(0.59,1]	chr7	620041	11	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	82	2	1.57133	1.9915500000000002	2.41177	0.0290023	0.00235332	0.129773	0.0215127
chr6	33398287	33398387	7121810	0	+	0.54	(0.53,0.59]	chr6	547555	1	CDS	CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7:ENST00000450504.1	protein_coding	protein_coding	protein_coding	protein_coding	6	31	2	1.90953	1.991165	2.0728	0.0517711	0.0086901	0.193577	0.0559355
chr11	61800918	61801018	12405910	0	-	0.31	(0.29,0.33]	chr11	960580	14	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	15	38	2	1.98817	1.99097	1.99377	0.00889512	0.0027532	0.0565003	0.0247437
chr4	98884921	98884991	5547723	0	-	0.371429	(0.36,0.39]	chr4	443083	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000505194.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	27	2	1.81362	1.990395	2.16717	0.016627	0.0152504	0.0880236	0.0828908
chr6	159780504	159780566	8049074	0	-	0.419355	(0.39,0.42]	chr6	615261	2	CDS	CDS:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000539756.1	protein_coding	protein_coding	protein_coding	protein_coding	16	63	2	1.59111	1.990185	2.38926	0.0242602	1.89756e-4	0.114087	0.00302753
chr1	17407924	17408021	874009	0	-	0.618557	(0.59,1]	chr1	89600	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	50	2	1.86913	1.989935	2.11074	0.0305	0.0194297	0.130204	0.0973387
chr7	75417837	75417933	8858928	0	-	0.458333	(0.455,0.49]	chr7	676960	12	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	43	2	1.7301	1.989375	2.24865	0.0168678	0.00240656	0.0889456	0.0217576
chr12	53027850	53027919	12884512	0	+	0.550725	(0.53,0.59]	chr12	1001775	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000549077.5:ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	39	2	1.90942	1.98936	2.0693	0.0160468	0.0105233	0.0860154	0.0644466
chr8	140521953	140522053	10132062	0	-	0.34	(0.33,0.36]	chr8	760954	19	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	1.91991	1.98923	2.05855	0.018622	0.0106036	0.0952021	0.0640636
chr2	151475761	151475860	2134942	0	+	0.272727	[0,0.29]	chr2	197868	8	UTR3	UTR3:EXON_MRNA:INTRON	RIF1	ENSG00000080345.18	ENST00000444746.7:ENST00000243326.9:ENST00000454583.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	35	2	1.90672	1.98908	2.07144	0.00631112	0.0052979	0.0447391	0.0403349
chr2	65268734	65268830	1854376	0	+	0.427083	(0.42,0.455]	chr2	175984	1	UTR3	UTR3:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8:ENST00000542850.2	protein_coding	protein_coding	protein_coding	protein_coding	23	80	2	1.28031	1.98905	2.69779	0.0241099	5.67322e-5	0.113408	0.00114271
chr1	40072902	40072998	954664	0	-	0.375	(0.36,0.39]	chr1	100850	3	UTR3	UTR3:EXON_MRNA	PPT1	ENSG00000131238.18	ENST00000641471.1:ENST00000642050.2:ENST00000530076.6:ENST00000641083.1:ENST00000641319.1:ENST00000530704.6:ENST00000433473.8:ENST00000439754.6:ENST00000449045.7:ENST00000641691.1:ENST00000641236.1:ENST00000529905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	48	2	1.54838	1.9890349999999999	2.42969	0.038399	3.34145e-4	0.15648	0.00472923
chr9	97930034	97930132	10759651	0	-	0.479592	(0.455,0.49]	chr9	814691	1	CDS	CDS:EXON_MRNA	HEMGN	ENSG00000136929.13	ENST00000259456.7:ENST00000616898.2	protein_coding	protein_coding	protein_coding	protein_coding	25	100	2	1.67998	1.98895	2.29792	0.00685926	9.42763e-5	0.0468483	0.0017195000000000001
chr10	22535733	22535830	11411107	0	-	0.350515	(0.33,0.36]	chr10	869854	10	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9	protein_coding	protein_coding	protein_coding	protein_coding	8	25	2	1.96645	1.988775	2.0111	0.0197415	0.0124964	0.095966	0.071421
chr2	231708515	231708610	2426247	0	+	0.663158	(0.59,1]	chr2	218654	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PTMA	ENSG00000187514.17	ENST00000466801.5:ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000468027.5:ENST00000409683.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	54	434	2	1.87327	1.988775	2.10428	9.63795e-4	3.0012e-4	0.0107863	0.00472028
chr2	65269412	65269509	1854383	0	+	0.350515	(0.33,0.36]	chr2	175984	8	UTR3	UTR3:EXON_MRNA	ACTR2	ENSG00000138071.14	ENST00000260641.10:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding	6	19	2	1.80608	1.98833	2.17058	0.0416784	0.01664	0.157445	0.0878065
chr17	8222783	8222881	16432211	0	-	0.520408	(0.49,0.53]	chr17	1340375	6	EXON_LNCRNA	EXON_LNCRNA	LINC00324	ENSG00000178977.3	ENST00000315707.3	lncRNA	lncRNA	lncRNA	lncRNA	170	665	2	1.9143	1.9883199999999999	2.06234	7.15969e-5	2.15303e-5	0.00137466	5.69976e-4
chr3	129170257	129170354	4443892	0	-	0.391753	(0.39,0.42]	chr3	369317	26	UTR3	UTR3:EXON_MRNA	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	68	2	1.92471	1.9882849999999999	2.05186	0.00446637	8.89552e-4	0.0347231	0.0102057
chr5	109336939	109337036	6754761	0	-	0.319588	(0.29,0.33]	chr5	518800	24	UTR3	UTR3:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.70137	1.98774	2.27411	0.0149082	0.00686811	0.0810583	0.0468903
chr2	121765565	121765665	2034655	0	+	0.34	(0.33,0.36]	chr2	192257	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TSN	ENSG00000211460.12	ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000490104.5:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	44	2	1.71741	1.987695	2.25798	0.0178699	9.56361e-4	0.0918323	0.010724
chr5	10280452	10280552	6446896	0	-	0.47	(0.455,0.49]	chr5	502164	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CMBL	ENSG00000164237.9	ENST00000503834.1:ENST00000296658.4:ENST00000510532.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	41	2	1.61715	1.9873800000000001	2.35761	0.0342264	0.00138275	0.142155	0.0143168
chr22	41875633	41875724	18383624	0	+	0.582418	(0.53,0.59]	chr22	1565013	2	CDS	CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000462539.1:ENST00000464119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	32	2	1.45957	1.987285	2.515	0.0324107	0.0292633	0.134785	0.129773
chr19	40232686	40232784	17565155	0	-	0.642857	(0.59,1]	chr19	1476051	25	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	49	2	1.66744	1.986835	2.30623	0.0369183	0.0170607	0.145208	0.0896731
chr17	8159906	8160001	16432001	0	-	0.484211	(0.455,0.49]	chr17	1340284	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-599B13.6:VAMP2	ENSG00000263620.1:ENSG00000220205.9	ENST00000498285.1:ENST00000316509.11	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.4646	1.98682	2.50904	0.0410791	0.0310515	0.15538	0.131262
chr16	85666254	85666347	15798007	0	+	0.55914	(0.53,0.59]	chr16	1257070	4	CDS	CDS:EXON_MRNA	GSE1	ENSG00000131149.19	ENST00000405402.6:ENST00000253458.12:ENST00000393243.5:ENST00000412692.5:ENST00000469381.1:ENST00000438180.1:ENST00000562659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	30	2	1.93217	1.986285	2.0404	0.0362529	0.0149802	0.148525	0.0814081
chr2	71349896	71349990	1881425	0	+	0.37234	(0.36,0.39]	chr2	177839	10	CDS	CDS:EXON_MRNA:INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000264447.9	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.43858	1.985845	2.53311	0.0581529	0.00345778	0.199345	0.0293796
chr2	74154497	74154596	2740215	0	-	0.363636	(0.36,0.39]	chr2	243880	21	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	20	70	2	1.83418	1.98505	2.13592	0.00997757	3.4768e-4	0.0622177	0.00488677
chr3	184171445	184171543	3948118	0	+	0.510204	(0.49,0.53]	chr3	331990	8	UTR3	UTR3:EXON_MRNA	DVL3	ENSG00000161202.20	ENST00000313143.9	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.40808	1.984955	2.56183	0.0485807	0.0261296	0.175495	0.118976
chr4	82864519	82864598	5496901	0	-	0.518987	(0.49,0.53]	chr4	440265	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000508479.5:ENST00000507828.5:ENST00000510167.1:ENST00000436790.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	25	2	1.40808	1.984955	2.56183	0.0485807	0.0261296	0.175495	0.118976
chr20	50902016	50902109	18006404	0	-	0.365591	(0.36,0.39]	chr20	1526251	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	29	2	1.85874	1.984875	2.11101	0.0415243	0.00480242	0.164804	0.0365653
chr1	244853954	244854053	1591273	0	-	0.393939	(0.39,0.42]	chr1	158388	38	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	35	2	1.40975	1.9848	2.55985	0.0492699	0.00115425	0.177329	0.0130851
chr7	12375009	12375081	8683423	0	-	0.402778	(0.39,0.42]	chr7	664030	1	CDS	CDS:EXON_MRNA:INTRON	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	31	2	1.87119	1.984605	2.09802	0.0373134	0.00495705	0.152293	0.0368301
chr11	32932540	32932640	11899052	0	+	0.39	(0.36,0.39]	chr11	909001	9	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	QSER1	ENSG00000060749.16	ENST00000650167.2:ENST00000399302.7:ENST00000527788.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	69	2	1.80879	1.9844	2.16001	0.00293575	7.75321e-4	0.0251505	0.00967578
chr18	49491729	49491784	17119632	0	-	0.472727	(0.455,0.49]	chr18	1405602	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL17-C18orf32:RPL17	ENSG00000215472.10:ENSG00000265681.8	ENST00000332968.11:ENST00000618619.4:ENST00000580261.6:ENST00000618613.5:ENST00000581373.5:ENST00000579248.5:ENST00000579408.5:ENST00000580210.5:ENST00000583637.5:ENST00000578532.5:ENST00000617346.4:ENST00000583036.5:ENST00000615760.4:ENST00000580387.5:ENST00000615479.4:ENST00000578528.1:ENST00000579495.1:ENST00000582782.5:ENST00000578966.1:ENST00000581305.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	56	2	1.71925	1.984385	2.24952	0.00786771	0.0015507	0.0514287	0.0165019
chr11	35810457	35810557	11910501	0	+	0.48	(0.455,0.49]	chr11	910190	42	UTR3	UTR3:EXON_MRNA	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	8	31	2	1.70534	1.98429	2.26324	0.0239221	0.00868189	0.109927	0.0558093
chr5	25189751	25189848	6504025	0	-	0.268041	[0,0.29]	chr5	504194	11	INTRON	INTRON	LINC02228	ENSG00000251273.4	ENST00000641970.1:ENST00000641261.2:ENST00000507600.2:ENST00000670589.1:ENST00000662466.1	lncRNA	lncRNA	lncRNA	lncRNA	11	27	2	1.52343	1.9841799999999998	2.44493	0.0301267	0.00386792	0.130016	0.0322452
chr1	65414619	65414718	251473	0	+	0.262626	[0,0.29]	chr1	28747	17	UTR3	UTR3:EXON_MRNA	DNAJC6	ENSG00000116675.16	ENST00000263441.11:ENST00000395325.7:ENST00000371069.5	protein_coding	protein_coding	protein_coding	protein_coding	13	34	2	1.93281	1.98413	2.03545	0.01348	0.00339809	0.0751291	0.0283451
chr9	131144614	131144698	10495807	0	+	0.464286	(0.455,0.49]	chr9	793240	5	CDS	CDS:UTR5:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding	22	83	2	1.96848	1.9840900000000001	1.9997	0.00204556	9.79994e-4	0.0200734	0.0109584
chr18	31548121	31548220	16809181	0	+	0.252525	[0,0.29]	chr18	1386482	15	UTR3	UTR3:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	7	18	2	1.56356	1.983755	2.40395	0.0431251	0.0210081	0.161433	0.101116
chr12	98516056	98516146	13036530	0	+	0.766667	(0.59,1]	chr12	1014932	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6:ENST00000261210.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	59	2	1.66744	1.98315	2.29886	0.0369183	0.00759671	0.145208	0.0505607
chr22	36523208	36523281	18499727	0	-	0.424658	(0.42,0.455]	chr22	1578453	1	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000455547.5:ENST00000457241.5:ENST00000432675.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	43	2	1.63927	1.982965	2.32666	0.0455517	9.50599e-4	0.175554	0.0107235
chr5	62385866	62385965	5993802	0	+	0.424242	(0.42,0.455]	chr5	469639	4	UTR3	UTR3:EXON_MRNA:INTRON	RP11-95I19.4:KIF2A	ENSG00000288643.1:ENSG00000068796.19	ENST00000509663.2:ENST00000407818.8:ENST00000674632.1:ENST00000674916.1:ENST00000676413.1:ENST00000676122.1:ENST00000674751.1:ENST00000381103.7:ENST00000676271.1:ENST00000674733.1:ENST00000674752.1:ENST00000675534.1:ENST00000675387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	33	2	1.63927	1.9829150000000002	2.32656	0.0455517	0.00298867	0.175554	0.0255712
chr1	30932925	30933020	916284	0	-	0.347368	(0.33,0.36]	chr1	95957	16	UTR3	UTR3:EXON_MRNA	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8	protein_coding	protein_coding	protein_coding	protein_coding	11	35	2	1.96645	1.9828649999999999	1.99928	0.0197415	0.00376859	0.095966	0.0305844
chr6	34219616	34219705	7124249	0	+	0.438202	(0.42,0.455]	chr6	548224	3	EXON_PSEUDO	EXON_PSEUDO	CYCSP55	ENSG00000214810.4	ENST00000399027.3	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	4	17	2	1.93033	1.982825	2.03532	0.0505055	0.040947	0.181202	0.163285
chr1	51798329	51798411	1016378	0	-	0.451219	(0.42,0.455]	chr1	105216	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	NRDC	ENSG00000078618.22	ENST00000354831.11:ENST00000440943.5:ENST00000544028.5:ENST00000539524.5:ENST00000352171.12:ENST00000485608.5:ENST00000497358.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	23	2	1.63927	1.98278	2.32629	0.0455517	0.0153564	0.175554	0.0832114
chr4	76180953	76181027	5475778	0	-	0.310811	(0.29,0.33]	chr4	439004	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SCARB2	ENSG00000138760.11	ENST00000264896.8:ENST00000639715.1:ENST00000638295.1:ENST00000639300.1:ENST00000640640.1:ENST00000638603.1:ENST00000638680.1:ENST00000639145.1:ENST00000682785.1:ENST00000640341.1:ENST00000639738.1:ENST00000452464.6:ENST00000638663.1:ENST00000638372.1:ENST00000640634.1:ENST00000640957.1:ENST00000639324.1:ENST00000502908.2:ENST00000640916.1:ENST00000509994.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	20	2	1.78695	1.98275	2.17855	0.0289406	0.0183673	0.127328	0.0928041
chr17	55776394	55776492	16274525	0	+	0.479592	(0.455,0.49]	chr17	1320159	4	UTR3	UTR3:EXON_MRNA:INTRON	PCTP	ENSG00000141179.14	ENST00000268896.10:ENST00000576183.5:ENST00000573500.5:ENST00000417982.6:ENST00000325214.10:ENST00000571489.5:ENST00000576221.1:ENST00000572536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	38	2	1.79605	1.98223	2.16841	0.0427708	0.00221684	0.168094	0.0205155
chr17	74203861	74203955	16348660	0	+	0.734043	(0.59,1]	chr17	1326155	4	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL38	ENSG00000172809.13	ENST00000439590.6:ENST00000530646.1:ENST00000529123.2:ENST00000311111.11:ENST00000584577.5:ENST00000534490.5:ENST00000533498.1:ENST00000528433.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	153	2	1.961	1.98217	2.00334	0.00524169	0.0015288	0.0399155	0.0155095
chr10	58386278	58386338	11057763	0	+	0.35	(0.33,0.36]	chr10	841601	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TFAM	ENSG00000108064.11	ENST00000373899.3:ENST00000487519.6:ENST00000373895.7:ENST00000395377.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	16	2	1.82394	1.981795	2.13965	0.0494504	0.0297101	0.18557	0.129986
chr5	180577071	180577170	6416564	0	+	0.353535	(0.33,0.36]	chr5	499475	30	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.82394	1.981795	2.13965	0.0494504	0.0297101	0.18557	0.129986
chr5	136179066	136179165	6241269	0	+	0.363636	(0.36,0.39]	chr5	486031	17	UTR3	UTR3:EXON_MRNA:INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000513418.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	27	2	1.94692	1.981745	2.01657	0.0192083	0.0118295	0.0943643	0.0692539
chrX	154359564	154359646	19278087	0	-	0.682927	(0.59,1]	chrX	1638310	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	67	2	1.87624	1.981665	2.08709	0.0194045	0.00890645	0.0944333	0.0565003
chrX	24060087	24060156	18616503	0	+	0.463768	(0.455,0.49]	chrX	1589798	1	CDS	CDS:EXON_MRNA:INTRON	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9:ENST00000423068.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	25	2	1.96875	1.9816099999999999	1.99447	0.0480352	0.012436	0.180552	0.0712518
chr1	149852654	149852754	464863	0	+	0.71	(0.59,1]	chr1	46808	1	CDS_START	CDS_START:CDS:EXON_MRNA	H3C15	ENSG00000203852.3	ENST00000403683.1	protein_coding	protein_coding	protein_coding	protein_coding	20	188	2	1.33815	1.9813549999999998	2.62456	0.0377488	6.59365e-5	0.147956	0.00140807
chr11	34079627	34079696	11905273	0	+	0.391304	(0.39,0.42]	chr11	909527	1	CDS	CDS:EXON_MRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	39	2	1.83206	1.981195	2.13033	0.00865856	0.00778482	0.0557159	0.0509384
chr1	229441806	229441903	1541817	0	-	0.278351	[0,0.29]	chr1	154359	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUP133	ENSG00000069248.12	ENST00000261396.6:ENST00000490352.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	14	2	1.80685	1.980865	2.15488	0.0438772	0.0436536	0.170594	0.163572
chr13	52476033	52476132	13747256	0	+	0.343434	(0.33,0.36]	chr13	1082861	10	UTR3	UTR3:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000378037.9:ENST00000258607.10:ENST00000490903.5	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.74061	1.9808150000000002	2.22102	0.0162558	0.00736622	0.0866586	0.0490627
chr11	12961822	12961916	12277825	0	-	0.446809	(0.42,0.455]	chr11	949292	4	EXON_LNCRNA	EXON_LNCRNA	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	6	25	2	1.71996	1.9807649999999999	2.24157	0.0542346	0.0087798	0.199653	0.0562439
chrM	4753	4847	19377187	0	+	0.425532	(0.42,0.455]	chrM	1649802	4	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	97	338	2	1.96139	1.98068	1.99997	1.05675e-4	5.90715e-5	0.00189096	0.00130042
chr22	16638578	16638658	18286099	0	+	0.4125	(0.39,0.42]	chr22	1551686	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000400593.6:ENST00000426585.5:ENST00000383140.7:ENST00000585784.1:ENST00000636884.1:ENST00000588424.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	45	2	1.85749	1.98047	2.10345	0.00953248	0.00250321	0.0599768	0.0233719
chr4	46724215	46724311	5405887	0	-	0.416667	(0.39,0.42]	chr4	432788	5	EXON_PSEUDO	EXON_PSEUDO	RAC1P2	ENSG00000249936.3	ENST00000511164.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	5	19	2	1.77926	1.9804050000000002	2.18155	0.0429531	0.0283931	0.161091	0.127654
chrM	12526	12621	19377266	0	+	0.452632	(0.42,0.455]	chrM	1649828	3	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	70	244	2	1.8124	1.9803799999999998	2.14836	2.95624e-4	5.82408e-5	0.0046768	0.00117039
chr11	119018036	119018053	12626310	0	-	0.588235	(0.53,0.59]	chr11	979697	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS25	ENSG00000118181.11	ENST00000527791.5:ENST00000532567.5:ENST00000527673.2:ENST00000527853.1:ENST00000524864.1:ENST00000528547.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	72	2	1.55135	1.980175	2.409	0.0294511	2.46266e-4	0.129773	0.0037218
chr18	8918247	8918344	16750741	0	+	0.463918	(0.455,0.49]	chr18	1381318	16	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	13	51	2	1.62077	1.97994	2.33911	0.0239989	5.94441e-4	0.110225	0.00804997
chr17	82082084	82082160	16710703	0	-	0.631579	(0.59,1]	chr17	1378154	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	11	91	2	1.94138	1.979225	2.01707	0.0100942	0.00551697	0.0625146	0.0415005
chr21	8217492	8217592	18041193	0	+	0.52	(0.49,0.53]	chr21	1530814	49	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2216	8593	2	1.9527	1.979025	2.00535	2.25751e-5	1.27551e-5	5.37283e-4	3.69156e-4
chr18	32412983	32413079	17064964	0	-	0.510417	(0.49,0.53]	chr18	1402366	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	GAREM1:HNRNPA1P7	ENSG00000141441.16:ENSG00000215492.6	ENST00000269209.7:ENST00000399218.8:ENST00000521273.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	17	66	2	1.57037	1.97877	2.38717	0.0109625	6.74369e-4	0.0649287	0.00826103
chr2	86484941	86485029	1927385	0	+	0.386364	(0.36,0.39]	chr2	181663	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000462197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	24	2	1.81362	1.97866	2.1437	0.0340515	0.016627	0.141465	0.0880236
chr8	56073089	56073189	9834805	0	-	0.43	(0.42,0.455]	chr8	744194	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RPS20	ENSG00000008988.11	ENST00000618656.2:ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000523936.5:ENST00000519606.5:ENST00000521289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	65	2	1.66491	1.978635	2.29236	0.0109087	4.96621e-4	0.0646137	0.00648267
chr11	33708939	33709037	12344202	0	-	0.336735	(0.33,0.36]	chr11	953994	61	UTR3	UTR3:EXON_MRNA:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1:ENST00000395850.9:ENST00000651485.1:ENST00000528987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	20	2	1.81756	1.978605	2.13965	0.0297101	0.0223533	0.129986	0.106046
chr1	111440941	111441037	1224902	0	-	0.364583	(0.36,0.39]	chr1	119932	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RP11-552M11.4:WDR77	ENSG00000243960.1:ENSG00000116455.14	ENST00000445680.1:ENST00000416099.1:ENST00000235090.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	11	37	2	1.89703	1.97838	2.05973	0.0150863	0.0039268	0.0821417	0.031494
chr9	107321982	107322050	10410460	0	+	0.573529	(0.53,0.59]	chr9	784013	1	CDS	CDS:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	7	35	2	1.88327	1.978035	2.0728	0.0298124	0.0086901	0.129773	0.0559355
chr12	6598030	6598099	13187385	0	-	0.492754	(0.49,0.53]	chr12	1032380	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP5-940J5.10:CHD4	ENSG00000285238.2:ENSG00000111642.16	ENST00000644480.2:ENST00000645022.1:ENST00000544040.7:ENST00000544484.6:ENST00000357008.7:ENST00000642810.1:ENST00000643335.1:ENST00000643815.1:ENST00000646806.1:ENST00000644137.1:ENST00000642879.1:ENST00000645645.1:ENST00000642594.1:ENST00000646268.1:ENST00000645095.1:ENST00000646608.1:ENST00000645005.1:ENST00000644801.1:ENST00000644289.1:ENST00000646366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	25	2	1.65324	1.9779399999999998	2.30264	0.0407792	0.0165402	0.163285	0.087611
chr1	202728255	202728353	1451707	0	-	0.408163	(0.39,0.42]	chr1	145774	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	26	2	1.93908	1.977925	2.01677	0.0235818	0.0154765	0.111323	0.0836906
chr1	112912916	112913014	1232305	0	-	0.306122	(0.29,0.33]	chr1	120455	12	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	17	52	2	1.67976	1.97779	2.27582	0.023292	3.09013e-4	0.110214	0.00446248
chr2	106697330	106697426	2825353	0	-	0.489583	(0.455,0.49]	chr2	252231	1	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	24	93	2	1.81074	1.977745	2.14475	0.00433817	2.6981e-4	0.0339139	0.00402513
chr10	5457288	5457386	10909072	0	+	0.316327	(0.29,0.33]	chr10	830430	4	UTR3	UTR3:EXON_MRNA	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	22	53	2	1.35245	1.9775550000000002	2.60266	0.0178555	3.76837e-4	0.0935734	0.00563632
chr2	135933908	135933990	2898591	0	-	0.548781	(0.53,0.59]	chr2	258639	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000441323.5:ENST00000456565.5:ENST00000449218.5	protein_coding	protein_coding	protein_coding	protein_coding	17	90	2	1.55135	1.977465	2.40358	0.0294511	9.77349e-5	0.129773	0.00177105
chr12	48690843	48690943	13321355	0	-	0.39	(0.36,0.39]	chr12	1044934	25	UTR3	UTR3:EXON_MRNA	CCNT1	ENSG00000129315.11	ENST00000618666.4:ENST00000261900.8	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.66836	1.9773749999999999	2.28639	0.0474647	0.00768469	0.17993	0.050396
chr3	47586444	47586542	4161745	0	-	0.5	(0.49,0.53]	chr3	348302	13	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	8	35	2	1.65324	1.9773550000000002	2.30147	0.0407792	0.0033367	0.163285	0.0278556
chr12	122130843	122130933	13123019	0	+	0.522222	(0.49,0.53]	chr12	1024797	1	CDS	CDS:EXON_MRNA	MLXIP	ENSG00000175727.14	ENST00000319080.12:ENST00000535430.5:ENST00000539861.5:ENST00000538061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	40	2	1.65324	1.9772250000000002	2.30121	0.0407792	0.00182399	0.163285	0.0176208
chr3	47419515	47419609	4160732	0	-	0.691489	(0.59,1]	chr3	348122	3	CDS	CDS:UTR3:EXON_MRNA:INTRON	SCAP	ENSG00000114650.20	ENST00000265565.10:ENST00000428413.5:ENST00000441517.6:ENST00000320017.10:ENST00000545718.2:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	43	2	1.96394	1.97699	1.99004	0.0453144	0.0214639	0.174798	0.102904
chr19	49491910	49492006	17370770	0	+	0.5625	(0.53,0.59]	chr19	1443140	2	UTR3	UTR3:EXON_MRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000677048.1:ENST00000676556.1:ENST00000678187.1:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	112	2	1.90514	1.97626	2.04738	0.00249279	5.27385e-4	0.0232767	0.00680028
chr19	12885958	12886050	17471815	0	-	0.706522	(0.59,1]	chr19	1463277	8	CDS	CDS:EXON_MRNA	KLF1	ENSG00000105610.6	ENST00000264834.6	protein_coding	protein_coding	protein_coding	protein_coding	8	65	2	1.788	1.9761199999999999	2.16424	0.0177321	0.0123032	0.0932051	0.0705839
chr7	16685904	16685931	8148980	0	+	0.444444	(0.42,0.455]	chr7	622136	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BZW2	ENSG00000136261.15	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000480517.5:ENST00000446596.5:ENST00000452975.6:ENST00000438834.5:ENST00000430000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	22	2	1.58962	1.976045	2.36247	0.0462889	0.0352	0.176878	0.142054
chr19	48325522	48325610	17365204	0	+	0.636364	(0.59,1]	chr19	1441676	3	UTR5	UTR5:EXON_MRNA:INTRON	EMP3	ENSG00000142227.11	ENST00000599704.5:ENST00000596315.5:ENST00000594198.1:ENST00000597529.1:ENST00000270221.11:ENST00000599255.5:ENST00000597279.5:ENST00000593437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	81	2	1.65693	1.975905	2.29488	0.0211812	0.00407435	0.102436	0.0324137
chr6	34287256	34287355	7672474	0	-	0.50505	(0.49,0.53]	chr6	588026	77	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	5	22	2	1.81659	1.9758	2.13501	0.0376859	0.0287874	0.147713	0.128869
chr19	13139776	13139874	17239906	0	+	0.387755	(0.36,0.39]	chr19	1421267	15	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	12	39	2	1.952	1.97577	1.99954	0.00826903	0.00521298	0.0542098	0.0385036
chr12	24812617	24812717	13255682	0	-	0.34	(0.33,0.36]	chr12	1038842	27	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	17	52	2	1.81351	1.975725	2.13794	0.00929969	9.42656e-4	0.0586162	0.0106522
chr16	70572110	70572209	15730183	0	+	0.393939	(0.39,0.42]	chr16	1253031	4	UTR3	UTR3:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000565990.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	129	2	1.95511	1.9756999999999998	1.99629	4.93524e-4	3.78483e-4	0.00692257	0.00525548
chr11	74977142	74977242	12021558	0	+	0.36	(0.33,0.36]	chr11	926808	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SPCS2	ENSG00000118363.12	ENST00000610881.4:ENST00000530257.5:ENST00000526361.1:ENST00000263672.11:ENST00000528265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	30	2	1.89957	1.975505	2.05144	0.0122916	0.00903135	0.0706701	0.0573114
chr10	5453249	5453346	10909023	0	+	0.42268	(0.42,0.455]	chr10	830405	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000380359.3	protein_coding	protein_coding	protein_coding	protein_coding	8	31	2	1.87908	1.97536	2.07164	0.0189336	0.0101168	0.0958835	0.0626311
chr19	34458846	34458924	17301169	0	+	0.474359	(0.455,0.49]	chr19	1430022	2	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	UBA2	ENSG00000126261.13	ENST00000586313.1:ENST00000246548.9:ENST00000439527.6:ENST00000591016.1:ENST00000592791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	21	2	1.96875	1.9753150000000002	1.98188	0.0480352	0.0226804	0.180552	0.105116
chr17	58330883	58330970	16612566	0	-	0.574713	(0.53,0.59]	chr17	1364726	1	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	MIR142:RP5-1171I10.5	ENSG00000284353.1:ENSG00000265206.5	ENST00000384835.3:ENST00000579003.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	18	78	2	1.6529	1.9751949999999998	2.29749	0.00548867	0.00181945	0.0402071	0.0183913
chr18	35102087	35102159	16822330	0	+	0.527778	(0.49,0.53]	chr18	1387324	3	CDS	CDS:EXON_MRNA	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000436190.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	1.78308	1.975135	2.16719	0.0425234	0.00606444	0.167547	0.0432957
chr15	48878640	48878740	14921710	0	+	0.4	(0.39,0.42]	chr15	1173116	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3:ENST00000560490.1	protein_coding	protein_coding	protein_coding	protein_coding	11	38	2	1.50045	1.9750200000000002	2.44959	0.0335886	0.00167534	0.1408	0.0164993
chr9	131228159	131228245	10496673	0	+	0.604651	(0.59,1]	chr9	793375	1	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000453861.6:ENST00000483497.6:ENST00000650694.1:ENST00000530491.1:ENST00000498010.2:ENST00000476004.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	90	2	1.90312	1.97485	2.04658	0.00874827	0.00667727	0.0560016	0.0464318
chrX	119243999	119244093	18840479	0	+	0.382979	(0.36,0.39]	chrX	1605479	9	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	11	35	2	1.6654	1.9747999999999999	2.2842	0.0161285	0.0049656	0.0866586	0.0381176
chr16	71920738	71920822	15733836	0	+	0.464286	(0.455,0.49]	chr16	1253414	1	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	IST1	ENSG00000182149.21	ENST00000544564.5:ENST00000541571.6:ENST00000535424.5:ENST00000606369.5:ENST00000537613.5:ENST00000424485.6:ENST00000566536.5:ENST00000378799.11:ENST00000538565.5:ENST00000329908.12:ENST00000538850.5:ENST00000541918.5:ENST00000378798.9:ENST00000534994.5:ENST00000539186.5:ENST00000439924.6:ENST00000626438.1:ENST00000545518.1:ENST00000456820.2:ENST00000537571.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	24	2	1.81931	1.974625	2.12994	0.0304832	0.0235519	0.130204	0.108737
chr1	67412606	67412706	1079132	0	-	0.24	[0,0.29]	chr1	110137	49	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6	protein_coding	protein_coding	protein_coding	protein_coding	20	49	2	1.62368	1.974545	2.32541	0.013391	4.63899e-4	0.0746727	0.00614893
chr4	73075934	73076033	5465963	0	-	0.353535	(0.33,0.36]	chr4	437721	27	UTR3	UTR3:EXON_MRNA	ANKRD17	ENSG00000132466.19	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6	protein_coding	protein_coding	protein_coding	protein_coding	20	58	2	1.26738	1.9745050000000002	2.68163	0.0389733	3.6761e-5	0.149725	8.85524e-4
chr1	1789196	1789269	829706	0	-	0.534247	(0.53,0.59]	chr1	82940	3	CDS	CDS:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000461893.5:ENST00000471354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	39	2	1.96946	1.97437	1.97928	0.0218546	0.0082201	0.104785	0.0534646
chrX	55013485	55013566	19084599	0	-	0.617284	(0.59,1]	chrX	1623737	1	CDS	CDS:EXON_MRNA:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.73732	1.97392	2.21052	0.010462	0.00716859	0.063428	0.048188
chr17	39202993	39203085	16219475	0	+	0.543478	(0.53,0.59]	chr17	1310964	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	256	2	1.6754	1.9738250000000002	2.27225	0.00135822	2.86881e-5	0.0146901	6.53441e-4
chr5	91369223	91369322	6695301	0	-	0.373737	(0.36,0.39]	chr5	516141	7	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.92623	1.9737050000000003	2.02118	0.0251625	0.0166541	0.117055	0.0881353
chr5	168497287	168497348	6369146	0	+	0.360656	(0.36,0.39]	chr5	494709	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RARS1	ENSG00000113643.9	ENST00000231572.8:ENST00000520013.5:ENST00000518757.5:ENST00000520421.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	24	2	1.92623	1.9737050000000003	2.02118	0.0251625	0.0166541	0.117055	0.0881353
chr1	241635797	241635875	1578072	0	-	0.384615	(0.36,0.39]	chr1	157616	1	UTR3	UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3:ENST00000638018.1:ENST00000638160.1:ENST00000638121.1:ENST00000636025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	37	2	1.30989	1.973455	2.63702	0.0366994	0.00212882	0.145024	0.0206577
chr15	41280288	41280388	14885234	0	+	0.47	(0.455,0.49]	chr15	1169243	10	UTR3	UTR3:EXON_MRNA	CHP1	ENSG00000187446.12	ENST00000334660.10	protein_coding	protein_coding	protein_coding	protein_coding	7	29	2	1.79605	1.9733450000000001	2.15064	0.0427708	0.00661084	0.168094	0.046082
chr19	2429047	2429145	17423099	0	-	0.520408	(0.49,0.53]	chr19	1453517	10	UTR3	UTR3:EXON_MRNA:INTRON	LMNB2	ENSG00000176619.13	ENST00000532465.1:ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	1.56467	1.97282	2.38097	0.051923	0.0425419	0.18423900000000001	0.167547
chrX	128122770	128122817	18856039	0	+	0.446809	(0.42,0.455]	chrX	1606438	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTG3P1	ENSG00000235334.1	ENST00000435859.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	13	56	2	1.58516	1.972715	2.36027	0.0389398	3.27999e-4	0.158547	0.00467073
chr3	44750242	44750341	4149061	0	-	0.343434	(0.33,0.36]	chr3	346666	16	UTR3	UTR3:EXON_MRNA:INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	18	2	1.96645	1.972435	1.97842	0.0469469	0.0197415	0.171977	0.095966
chrX	119244093	119244186	18840480	0	+	0.430108	(0.42,0.455]	chrX	1605479	10	UTR3	UTR3:EXON_MRNA	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	15	56	2	1.82443	1.97233	2.12023	0.00665171	0.00189178	0.0457102	0.0181965
chr6	49605464	49605561	7729594	0	-	0.340206	(0.33,0.36]	chr6	592928	4	UTR3	UTR3:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1	protein_coding	protein_coding	protein_coding	protein_coding	48	143	2	1.80879	1.9721199999999999	2.13545	0.00117137	6.45133e-5	0.0131861	0.00126447
chr16	4690186	4690285	15502932	0	+	0.50505	(0.49,0.53]	chr16	1229314	14	UTR3	UTR3:EXON_MRNA	MGRN1	ENSG00000102858.13	ENST00000415496.5:ENST00000262370.12:ENST00000399577.9	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.92759	1.971115	2.01464	0.0267071	0.0205094	0.118504	0.0991175
chr3	150572433	150572529	3807849	0	+	0.40625	(0.39,0.42]	chr3	325029	6	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000477551.5:ENST00000465535.1:ENST00000482471.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	60	2	1.33865	1.970755	2.60286	0.0417156	1.08088e-4	0.165497	0.00193027
chr1	29115698	29115797	121604	0	+	0.545455	(0.53,0.59]	chr1	14744	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000649992.1:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	1.87133	1.970315	2.0693	0.0308819	0.0160468	0.130016	0.0860154
chr20	50583783	50583880	17816220	0	+	0.56701	(0.53,0.59]	chr20	1507152	12	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	6	30	2	1.88327	1.970305	2.05734	0.0298124	0.0167029	0.129773	0.0883198
chr6	159779144	159779196	8049053	0	-	0.346154	(0.33,0.36]	chr6	615247	1	CDS	CDS:UTR3:EXON_MRNA	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6	protein_coding	protein_coding	protein_coding	protein_coding	11	33	2	1.88903	1.970235	2.05144	0.00903135	0.00883549	0.0573114	0.0563505
chr8	73946534	73946629	9893787	0	-	0.242105	[0,0.29]	chr8	747926	16	UTR3	UTR3:EXON_MRNA:INTRON	ELOC	ENSG00000154582.17	ENST00000602840.5:ENST00000518127.5:ENST00000520242.6:ENST00000622804.1:ENST00000520210.1:ENST00000519487.5:ENST00000284811.12:ENST00000522337.5:ENST00000523815.5	protein_coding	protein_coding	protein_coding	protein_coding	8	21	2	1.7788	1.96977	2.16074	0.0222978	0.0208453	0.105845	0.100997
chrX	71283644	71283735	18730704	0	+	0.615385	(0.59,1]	chrX	1598374	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000679254.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678414.1:ENST00000679062.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000678852.1:ENST00000677612.1:ENST00000677977.1:ENST00000471419.7:ENST00000472185.1:ENST00000413858.5:ENST00000486613.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	152	2	1.59315	1.96967	2.34619	0.0182711	3.54578e-4	0.0925808	0.00496811
chr10	32901469	32901569	11443888	0	-	0.43	(0.42,0.455]	chr10	872611	13	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	41	2	1.43196	1.96955	2.50714	0.0399324	0.00122903	0.162323	0.0130835
chr1	26779694	26779790	111009	0	+	0.510417	(0.49,0.53]	chr1	13354	8	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	25	2	1.75643	1.9694099999999999	2.18239	0.0293825	0.024394	0.129773	0.111797
chr19	1095258	1095315	17417516	0	-	0.561404	(0.53,0.59]	chr19	1452132	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4:ENST00000591709.1:ENST00000592597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	21	2	1.90953	1.9692150000000002	2.0289	0.0517711	0.0373899	0.193577	0.146698
chr10	119070985	119071085	11717565	0	-	0.44	(0.42,0.455]	chr10	893850	2	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.9028	1.96906	2.03532	0.040947	0.0112346	0.163285	0.0665375
chr8	73291143	73291197	9888172	0	-	0.425926	(0.42,0.455]	chr8	747612	1	CDS	CDS:EXON_MRNA	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000466821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	28	2	1.9028	1.96906	2.03532	0.040947	0.0112346	0.163285	0.0665375
chr2	108685868	108685966	1982467	0	+	0.377551	(0.36,0.39]	chr2	188213	20	UTR3	UTR3:EXON_MRNA	LIMS1	ENSG00000169756.16	ENST00000544547.5:ENST00000393310.5	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.63825	1.968995	2.29974	0.0311278	0.00926291	0.130473	0.0586162
chr12	6945822	6945922	12715736	0	+	0.68	(0.59,1]	chr12	987350	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	C12orf57	ENSG00000111678.11	ENST00000542222.1:ENST00000545581.5:ENST00000537087.5:ENST00000229281.6:ENST00000540506.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	58	2	1.82129	1.968855	2.11642	0.0227814	0.0144884	0.105293	0.0790431
chr6	32180419	32180512	7118667	0	+	0.548387	(0.53,0.59]	chr6	547014	2	UTR3	UTR3:EXON_MRNA	RNF5	ENSG00000204308.8	ENST00000375094.4	protein_coding	protein_coding	protein_coding	protein_coding	25	114	2	1.83265	1.9688149999999998	2.10498	0.00186142	6.54849e-4	0.018635	0.0080931
chr7	100099358	100099403	8949696	0	-	0.422222	(0.42,0.455]	chr7	683554	1	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6:ENST00000463722.5:ENST00000425308.5:ENST00000467516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	42	2	1.96087	1.9687899999999998	1.97671	0.00983972	0.00554508	0.0615953	0.0405292
chr12	76355988	76356021	13424337	0	-	0.272727	[0,0.29]	chr12	1056703	1	CDS	CDS:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4:ENST00000393250.8	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	1.93716	1.96863	2.0001	0.0548436	0.0227161	0.189511	0.107633
chr1	156742778	156742873	1316756	0	-	0.410526	(0.39,0.42]	chr1	133965	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	33	2	1.92026	1.968515	2.01677	0.0235818	0.00726512	0.111323	0.0487474
chrX	104190271	104190370	18794955	0	+	0.464646	(0.455,0.49]	chrX	1602486	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM199X	ENSG00000123575.9	ENST00000493442.2:ENST00000299906.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	26	2	1.53019	1.9684149999999998	2.40664	0.0428973	0.0123662	0.161091	0.0705839
chr16	58161997	58162095	15965645	0	-	0.520408	(0.49,0.53]	chr16	1280935	26	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	50	2	1.46766	1.96806	2.46846	0.0523669	4.21053e-4	0.194793	0.00571742
chr1	39560906	39561005	952914	0	-	0.323232	(0.29,0.33]	chr1	100522	3	UTR3	UTR3:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000677006.1:ENST00000527718.2:ENST00000676859.1:ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000372862.7:ENST00000678469.1:ENST00000677708.1:ENST00000678028.1:ENST00000468476.1:ENST00000437136.5:ENST00000492468.5:ENST00000482028.5:ENST00000676523.1:ENST00000677548.1:ENST00000678980.1:ENST00000677244.1:ENST00000677609.1:ENST00000679246.1:ENST00000678287.1:ENST00000678625.1:ENST00000470443.6:ENST00000677860.1:ENST00000676863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	38	2	1.81246	1.967755	2.12305	0.0178891	0.00134195	0.0937046	0.0145367
chrM	7060	7156	19377208	0	+	0.416667	(0.39,0.42]	chrM	1649805	12	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	175	569	2	1.8705	1.9677099999999998	2.06492	9.80615e-5	1.48589e-5	0.00177549	4.18164e-4
chr17	40413479	40413552	16539025	0	-	0.383562	(0.36,0.39]	chr17	1354689	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000581055.1	protein_coding	protein_coding	protein_coding	protein_coding	15	54	2	1.66035	1.967705	2.27506	0.026191	3.99779e-4	0.119224	0.0054764
chr4	17624091	17624188	4734387	0	+	0.350515	(0.33,0.36]	chr4	392802	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	52	2	1.23273	1.9676200000000001	2.70251	0.0350422	2.0519e-4	0.145289	0.00321957
chr4	83461680	83461779	5500207	0	-	0.353535	(0.33,0.36]	chr4	440770	23	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	26	2	1.48471	1.967285	2.44986	0.0406322	0.00563343	0.153743	0.0422191
chr3	23920195	23920294	3358569	0	+	0.383838	(0.36,0.39]	chr3	294139	8	UTR3	UTR3:EXON_MRNA:INTRON	RPL15	ENSG00000174748.22	ENST00000611050.4:ENST00000307839.10:ENST00000413699.7:ENST00000456530.7	protein_coding	protein_coding	protein_coding	protein_coding	18	60	2	1.93351	1.96722	2.00093	0.00996106	0.00122378	0.0621728	0.0130695
chr3	152299995	152300094	3816858	0	+	0.373737	(0.36,0.39]	chr3	325627	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	45	2	1.65605	1.96709	2.27813	0.0163579	0.0012894	0.0870858	0.0136723
chr5	157791799	157791897	6936046	0	-	0.520408	(0.49,0.53]	chr5	531294	2	CDS	CDS:EXON_MRNA	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000518855.5:ENST00000523908.5:ENST00000521047.1:ENST00000530302.1:ENST00000521615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	25	2	1.66773	1.96707	2.26641	0.0381288	0.0190546	0.149227	0.093872
chr16	70267658	70267733	15997040	0	-	0.56	(0.53,0.59]	chr16	1284648	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000569790.2:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	58	2	1.552	1.966955	2.38191	0.0115271	0.00477439	0.0675865	0.0368489
chr5	55944655	55944733	5975829	0	+	0.5	(0.49,0.53]	chr5	468680	1	EXON_PSEUDO	EXON_PSEUDO	CTD-2031P19.4	ENSG00000264281.3	ENST00000582508.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	64	2	1.72711	1.96685	2.20659	0.0162279	5.92952e-4	0.0864269	0.00744861
chr15	66503057	66503110	15353018	0	-	0.603774	(0.59,1]	chr15	1212578	1	CDS	CDS:UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5:ENST00000566491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	119	2	1.86224	1.966535	2.07083	0.0049085	0.00439979	0.0366648	0.034236
chr17	81512652	81512751	16707892	0	-	0.787879	(0.59,1]	chr17	1377347	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	187	2	1.55838	1.966185	2.37399	0.0124424	2.45669e-4	0.0709882	0.00371311
chrX	41316538	41316589	18669314	0	+	0.411765	(0.39,0.42]	chrX	1592162	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000238426.1	ENST00000459189.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	29	95	2	1.9379	1.965835	1.99377	0.00101743	7.22451e-4	0.0113182	0.00908656
chr11	118597842	118597911	12159703	0	+	0.42029	(0.42,0.455]	chr11	937268	3	CDS	CDS:EXON_MRNA:INTRON	ARCN1	ENSG00000095139.14	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	9	32	2	1.5897	1.965805	2.34191	0.0208528	0.0159091	0.101022	0.0854674
chr2	20249288	20249388	2540630	0	-	0.45	(0.42,0.455]	chr2	228490	7	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.58962	1.965765	2.34191	0.0352	0.0159091	0.142054	0.0854674
chr2	26098661	26098722	1685332	0	+	0.327869	(0.29,0.33]	chr2	164715	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5:ENST00000473035.1:ENST00000462003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	29	2	1.71387	1.965505	2.21714	0.0355849	0.00315975	0.147262	0.0266443
chr1	223774953	223775050	727592	0	+	0.319588	(0.29,0.33]	chr1	73491	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPN2	ENSG00000162909.18	ENST00000433674.6:ENST00000295006.6:ENST00000474026.5:ENST00000487223.5:ENST00000463997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	21	2	1.47719	1.9654600000000002	2.45373	0.042905	0.0156405	0.161091	0.084273700000000007
chr1	7779942	7780042	29759	0	+	0.35	(0.33,0.36]	chr1	3443	4	UTR3	UTR3:EXON_MRNA	VAMP3	ENSG00000049245.13	ENST00000054666.11	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.65713	1.96524	2.27335	0.0528205	0.00837768	0.195536	0.0541213
chr17	28943604	28943703	16488982	0	-	0.353535	(0.33,0.36]	chr17	1348482	155	INTRON	INTRON	PHF12	ENSG00000109118.14	ENST00000332830.9:ENST00000577226.5:ENST00000582436.5:ENST00000378879.7:ENST00000268756.7:ENST00000583524.5:ENST00000483934.5:ENST00000584685.1:ENST00000582853.5:ENST00000584236.1:ENST00000583747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	44	2	1.77487	1.96521	2.15555	0.00575018	0.00520888	0.0426551	0.03848
chr14	22769790	22769862	14174763	0	+	0.583333	(0.53,0.59]	chr14	1110320	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OXA1L	ENSG00000155463.14	ENST00000285848.9:ENST00000612549.6:ENST00000473744.5:ENST00000442110.6:ENST00000431881.6:ENST00000412791.5:ENST00000495424.5:ENST00000358043.5:ENST00000481218.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	34	2	1.77634	1.965185	2.15403	0.025972	0.0118065	0.117079	0.0686664
chr11	9436270	9436366	11792792	0	+	0.479167	(0.455,0.49]	chr11	902912	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	1.92777	1.9650949999999998	2.00242	0.0286531	0.0074882	0.128685	0.0495195
chr3	196074020	196074120	4663407	0	-	0.52	(0.49,0.53]	chr3	385637	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	50	194	2	1.77441	1.964605	2.1548	8.05406e-4	7.57465e-5	0.00946418	0.00159105
chr13	46126803	46126901	14009608	0	-	0.408163	(0.39,0.42]	chr13	1098488	10	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	18	62	2	1.6828	1.964575	2.24635	0.0089224	6.59236e-4	0.0567495	0.00813482
chr21	33558585	33558679	18101246	0	+	0.414894	(0.39,0.42]	chr21	1534538	12	UTR3	UTR3:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	44	2	1.70182	1.964445	2.22707	0.00857995	0.00574688	0.0553062	0.0426551
chr22	36518836	36518910	18499679	0	-	0.554054	(0.53,0.59]	chr22	1578436	2	CDS	CDS:EXON_MRNA	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000405442.5:ENST00000458572.1:ENST00000455547.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	25	2	1.65775	1.96444	2.27113	0.0573191	0.0178853	0.196623	0.0918323
chr6	31817198	31817294	7116675	0	+	0.604167	(0.59,1]	chr6	546204	15	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	19	152	2	1.16045	1.964105	2.76776	0.0527289	7.99243e-5	0.195536	0.00151347
chr7	44579378	44579478	8800226	0	-	0.38	(0.36,0.39]	chr7	671335	16	UTR3	UTR3:EXON_MRNA	TMED4	ENSG00000158604.15	ENST00000289577.9:ENST00000457408.7	protein_coding	protein_coding	protein_coding	protein_coding	11	35	2	1.65397	1.9640399999999998	2.27411	0.0219269	0.00289952	0.103959	0.0258199
chr11	118763211	118763306	12625572	0	-	0.442105	(0.42,0.455]	chr11	979564	1	CDS	CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding	11	40	2	1.52411	1.96399	2.40387	0.0266256	0.00231472	0.118249	0.0219615
chr15	90501173	90501270	15100807	0	+	0.309278	(0.29,0.33]	chr15	1188226	12	UTR3	UTR3:EXON_MRNA	IQGAP1	ENSG00000140575.13	ENST00000268182.10:ENST00000558957.1:ENST00000561086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	22	2	1.78695	1.9639	2.14085	0.0289406	0.0117968	0.127328	0.0686664
chr3	143056648	143056748	3793632	0	+	0.3	(0.29,0.33]	chr3	323977	3	UTR3	UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000473835.7:ENST00000493598.6:ENST00000463563.6:ENST00000467348.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	22	2	1.78695	1.9639	2.14085	0.0289406	0.0117968	0.127328	0.0686664
chr1	161791437	161791537	502128	0	+	0.46	(0.455,0.49]	chr1	54508	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	17	2	1.95898	1.963865	1.96875	0.0480352	0.047107	0.180552	0.172269
chr1	214645536	214645634	710477	0	+	0.489796	(0.455,0.49]	chr1	71911	11	CDS	CDS:EXON_MRNA	CENPF	ENSG00000117724.13	ENST00000366955.8	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.95898	1.963865	1.96875	0.0480352	0.047107	0.180552	0.172269
chr19	36236440	36236540	17309070	0	+	0.47	(0.455,0.49]	chr19	1432278	1	CDS_START	CDS_START:CDS:EXON_MRNA	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000443387.3	protein_coding	protein_coding	protein_coding	protein_coding	4	17	2	1.95898	1.963865	1.96875	0.0480352	0.047107	0.180552	0.172269
chr12	76353492	76353592	13424312	0	-	0.38	(0.36,0.39]	chr12	1056701	18	UTR3	UTR3:EXON_MRNA	OSBPL8	ENSG00000091039.17	ENST00000261183.8:ENST00000393249.6:ENST00000611266.4	protein_coding	protein_coding	protein_coding	protein_coding	9	29	2	1.82984	1.9638499999999999	2.09786	0.0234753	0.00658605	0.108434	0.0454205
chr1	17407535	17407632	874005	0	-	0.608247	(0.59,1]	chr1	89600	9	UTR3	UTR3:EXON_MRNA	RCC2	ENSG00000179051.14	ENST00000375436.9	protein_coding	protein_coding	protein_coding	protein_coding	14	112	2	1.6208	1.963825	2.30685	0.0164916	0.00141964	0.0873033	0.0145973
chr1	150219701	150219800	1288430	0	-	0.282828	[0,0.29]	chr1	128126	14	UTR3	UTR3:EXON_MRNA	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4	protein_coding	protein_coding	protein_coding	protein_coding	11	29	2	1.88543	1.96381	2.04219	0.0226603	0.00477383	0.10742	0.0363623
chr7	23470110	23470205	8725817	0	-	0.378947	(0.36,0.39]	chr7	666134	1	UTR5	UTR5:EXON_MRNA	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	19	2	1.54187	1.963755	2.38564	0.0476159	0.0425746	0.17993	0.160556
chr16	85556326	85556363	15796883	0	+	0.432432	(0.42,0.455]	chr16	1256990	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.93033	1.96367	1.99701	0.0505055	0.0235036	0.181202	0.111072
chr11	73974754	73974838	12458780	0	-	0.571429	(0.53,0.59]	chr11	968486	2	UTR3	UTR3:EXON_MRNA	UCP2	ENSG00000175567.11	ENST00000663595.2:ENST00000310473.9:ENST00000536983.5	protein_coding	protein_coding	protein_coding	protein_coding	8	39	2	1.78852	1.963405	2.13829	0.0249781	0.00663709	0.116495	0.046176300000000003
chr7	100097833	100097890	8949674	0	-	0.578947	(0.53,0.59]	chr7	683537	1	CDS	CDS:EXON_MRNA:INTRON	MCM7	ENSG00000166508.18	ENST00000303887.10:ENST00000489841.5:ENST00000621318.4:ENST00000354230.7:ENST00000343023.10:ENST00000485286.5:ENST00000491245.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	58	2	1.79365	1.963335	2.13302	0.0165609	0.00173658	0.087473	0.0169976
chr11	65429800	65429900	11984641	0	+	0.52	(0.49,0.53]	chr11	920390	58	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	42	164	2	1.93949	1.963145	1.9868	3.76709e-4	3.58862e-4	0.0056356	0.00502631
chr19	17582395	17582490	17254827	0	+	0.452632	(0.42,0.455]	chr19	1424488	11	UTR3	UTR3:EXON_MRNA	COLGALT1	ENSG00000130309.11	ENST00000252599.9:ENST00000593832.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	45	2	1.66491	1.96294	2.26097	0.0109087	0.00404179	0.0646137	0.032143
chr1	25900915	25901015	905274	0	-	0.38	(0.36,0.39]	chr1	94145	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	119	368	2	1.80124	1.96289	2.12454	2.17976e-4	1.72551e-5	0.00363711	4.33874e-4
chr7	135928935	135929034	9085570	0	-	0.383838	(0.36,0.39]	chr7	693646	23	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	50	169	2	1.6472	1.9627750000000002	2.27835	0.00280585	1.80054e-5	0.0250627	4.47324e-4
chr1	633831	633930	505	0	+	0.333333	(0.33,0.36]	chr1	108	4	EXON_PSEUDO	EXON_PSEUDO	MTATP6P1	ENSG00000248527.1	ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	53	143	2	1.87264	1.96269	2.05274	3.69692e-4	1.91644e-4	0.00555051	0.00304968
chr1	154974745	154974804	481970	0	+	0.40678	(0.39,0.42]	chr1	50147	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA	CKS1B	ENSG00000173207.13	ENST00000368439.5:ENST00000308987.6:ENST00000368436.1	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	1.79377	1.962545	2.13132	0.0299302	0.02908	0.129773	0.127648
chr19	49489862	49489922	17370737	0	+	0.65	(0.59,1]	chr19	1443112	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	80	626	2	1.91186	1.96251	2.01316	7.03976e-4	2.54274e-4	0.00888039	0.00382378
chr13	98452872	98452972	14117764	0	-	0.3	(0.29,0.33]	chr13	1105044	78	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	11	26	2	1.2865	1.9623149999999998	2.63813	0.0475597	0.00803229	0.173842	0.0528968
chr11	95834903	95834999	12550029	0	-	0.34375	(0.33,0.36]	chr11	973820	22	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675438.1:ENST00000675489.1:ENST00000676261.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	31	2	1.95788	1.9621650000000002	1.96645	0.0197415	0.00652477	0.095966	0.0455786
chr3	185916924	185917023	4628248	0	-	0.353535	(0.33,0.36]	chr3	382241	25	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	31	2	1.95788	1.9621650000000002	1.96645	0.0197415	0.00652477	0.095966	0.0455786
chr16	2771036	2771125	15494995	0	+	0.550562	(0.53,0.59]	chr16	1227823	1	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	50	232	2	1.77644	1.961505	2.14657	0.00124682	5.97348e-5	0.0137762	0.0011969699999999999
chr22	19177941	19178041	18431182	0	-	0.69	(0.59,1]	chr22	1570510	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5:ENST00000461267.1:ENST00000468824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	58	2	1.9603	1.961475	1.96265	0.0238491	0.0141758	0.112466	0.0776158
chr6	31795117	31795217	7662584	0	-	0.67	(0.59,1]	chr6	585345	1	CDS_START	CDS_START:CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000440048.1	protein_coding	protein_coding	protein_coding	protein_coding	17	134	2	1.8214	1.9614349999999998	2.10147	0.00495252	0.00283113	0.0368151	0.0252777
chr12	98601528	98601627	13036980	0	+	0.333333	(0.33,0.36]	chr12	1015026	1	UTR3	UTR3:EXON_MRNA	SLC25A3	ENSG00000075415.15	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000548480.1:ENST00000547869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	79	2	1.74292	1.9614150000000001	2.17991	0.00822569	1.79295e-4	0.0540283	0.00290134
chr11	64765192	64765290	12419184	0	-	0.510204	(0.49,0.53]	chr11	962880	7	UTR3	UTR3:EXON_MRNA	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	96	2	1.7678	1.96137	2.15494	0.00358953	3.76966e-4	0.0302391	0.00523616
chr12	22686923	22687021	12786272	0	+	0.377551	(0.36,0.39]	chr12	993067	21	UTR3	UTR3:EXON_MRNA	ETNK1	ENSG00000139163.16	ENST00000266517.9	protein_coding	protein_coding	protein_coding	protein_coding	9	29	2	1.63825	1.9612249999999998	2.2842	0.0311278	0.0049656	0.130473	0.0381176
chr2	168873584	168873683	3002568	0	-	0.363636	(0.36,0.39]	chr2	265637	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SPC25	ENSG00000152253.9	ENST00000479309.6:ENST00000282074.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	29	2	1.63825	1.9612249999999998	2.2842	0.0311278	0.0049656	0.130473	0.0381176
chr11	47726893	47726992	12388895	0	-	0.444444	(0.42,0.455]	chr11	957309	1	EXON_SMALL	EXON_SMALL:EXON_MRNA:INTRON	FNBP4:Y_RNA	ENSG00000109920.13:ENSG00000200090.1	ENST00000263773.10:ENST00000530207.1:ENST00000525792.5:ENST00000531394.1:ENST00000363220.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:retained_intron:processed_transcript	25	90	2	1.80508	1.9610750000000001	2.11707	0.00215039	6.37489e-4	0.0200768	0.00844726
chr12	62336090	62336190	12913825	0	+	0.34	(0.33,0.36]	chr12	1006428	10	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	29	2	1.48471	1.96102	2.43733	0.0406322	0.00277951	0.153743	0.0248466
chr8	89934406	89934504	9933202	0	-	0.459184	(0.455,0.49]	chr8	749986	12	UTR3	UTR3:EXON_MRNA	NBN	ENSG00000104320.14	ENST00000265433.8:ENST00000396252.6:ENST00000409330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	1.62042	1.960905	2.30139	0.0530131	0.0320389	0.195536	0.133433
chr2	117830624	117830724	2021872	0	+	0.39	(0.36,0.39]	chr2	191115	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	DDX18	ENSG00000088205.13	ENST00000263239.7:ENST00000476149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	30	2	1.66365	1.960795	2.25794	0.0345996	0.00429221	0.143631	0.0333617
chr17	39994953	39995010	16222554	0	+	0.614035	(0.59,1]	chr17	1311743	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000485835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	42	2	1.67735	1.9606599999999998	2.24397	0.0534288	0.0206682	0.184995	0.0997234
chr17	81701803	81701882	16381125	0	+	0.64557	(0.59,1]	chr17	1331936	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HGS	ENSG00000185359.14	ENST00000677161.1:ENST00000678096.1:ENST00000679191.1:ENST00000676546.1:ENST00000677109.1:ENST00000677484.1:ENST00000678115.1:ENST00000677243.1:ENST00000677044.1:ENST00000679336.1:ENST00000678196.1:ENST00000678105.1:ENST00000676478.1:ENST00000329138.9:ENST00000677225.1:ENST00000678866.1:ENST00000679275.1:ENST00000678541.1:ENST00000676729.1:ENST00000678658.1:ENST00000677159.1:ENST00000573949.1:ENST00000678607.1:ENST00000573320.2:ENST00000677466.1:ENST00000679340.1:ENST00000570652.2:ENST00000677663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	42	2	1.67735	1.9606599999999998	2.24397	0.0534288	0.0206682	0.184995	0.0997234
chr1	21833325	21833384	890726	0	-	0.644068	(0.59,1]	chr1	92266	2	CDS	CDS:EXON_MRNA	HSPG2	ENSG00000142798.20	ENST00000374695.8:ENST00000635682.1:ENST00000471322.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	48	2	1.55494	1.960435	2.36593	0.0511194	0.0141097	0.182342	0.077233
chr1	96679526	96679620	1185024	0	-	0.457447	(0.455,0.49]	chr1	116525	8	EXON_PSEUDO	EXON_PSEUDO	RPL7P9	ENSG00000137970.7	ENST00000468715.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	81	2	1.33383	1.96036	2.58689	0.0392563	3.38988e-5	0.159739	7.46965e-4
chr7	137722558	137722654	8560990	0	+	0.375	(0.36,0.39]	chr7	653090	7	EXON_PSEUDO	EXON_PSEUDO	AC009245.3	ENSG00000230383.1	ENST00000456481.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	45	2	1.53109	1.9603350000000002	2.38958	0.0522406	4.27163e-4	0.19442	0.00577513
chr10	70426825	70426925	11100499	0	+	0.44	(0.42,0.455]	chr10	844350	52	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.86513	1.96014	2.05515	0.0357107	0.017518	0.147298	0.0924156
chr1	150576566	150576665	1288943	0	-	0.313131	(0.29,0.33]	chr1	128249	25	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	44	2	1.77514	1.960085	2.14503	0.00817479	0.0018619	0.0537387	0.0179151
chrX	120438758	120438857	19196147	0	-	0.333333	(0.33,0.36]	chrX	1631971	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	65	2	1.14851	1.95965	2.77079	0.0449896	3.4875e-5	0.173866	7.6567e-4
chr4	673911	673966	5275253	0	-	0.690909	(0.59,1]	chr4	424209	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ATP5ME	ENSG00000169020.10	ENST00000304312.5:ENST00000515202.5:ENST00000505852.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	35	2	1.88006	1.959635	2.03921	0.0554008	0.0371471	0.191173	0.151849
chr12	24811520	24811619	13255671	0	-	0.353535	(0.33,0.36]	chr12	1038842	16	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.93923	1.9595799999999999	1.97993	0.0142064	0.00884101	0.0777259	0.0563713
chr12	130873065	130873128	13154824	0	+	0.492063	(0.49,0.53]	chr12	1027969	2	CDS	CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	RAN	ENSG00000132341.12	ENST00000448750.7:ENST00000536606.5:ENST00000543796.6:ENST00000541630.5:ENST00000537745.5:ENST00000392369.6:ENST00000477395.5:ENST00000535090.5:ENST00000541679.7:ENST00000392367.4:ENST00000464211.6:ENST00000539498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	45	2	1.95113	1.959365	1.9676	0.00876974	0.00618788	0.056115	0.0440445
chr10	51696832	51696928	11490809	0	-	0.364583	(0.36,0.39]	chr10	876944	15	UTR3	UTR3:EXON_MRNA	CSTF2T	ENSG00000177613.9	ENST00000331173.6	protein_coding	protein_coding	protein_coding	protein_coding	5	17	2	1.85874	1.9592	2.05966	0.0415243	0.0366015	0.164804	0.145024
chr12	878211	878286	12681339	0	+	0.506667	(0.49,0.53]	chr12	984075	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000545285.5:ENST00000535698.1:ENST00000674810.1:ENST00000574679.1:ENST00000675236.1:ENST00000542543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	22	2	1.92759	1.959015	1.99044	0.0435903	0.0267071	0.170594	0.118504
chr3	128082482	128082574	4440193	0	-	0.521739	(0.49,0.53]	chr3	368839	1	CDS	CDS:EXON_MRNA:INTRON	RUVBL1	ENSG00000175792.12	ENST00000585057.5:ENST00000472125.5:ENST00000464873.5:ENST00000322623.10:ENST00000582176.1:ENST00000478892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.92759	1.959015	1.99044	0.0435903	0.0267071	0.170594	0.118504
chr6	16266117	16266217	7067553	0	+	0.43	(0.42,0.455]	chr6	540898	76	INTRON	INTRON	GMPR	ENSG00000137198.10	ENST00000259727.5:ENST00000543191.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	58	217	2	1.52712	1.95884	2.39056	0.00439148	3.91139e-6	0.0337521	1.38097e-4
chr4	150683550	150683633	5729666	0	-	0.445783	(0.42,0.455]	chr4	452811	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000508396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	20	2	1.72071	1.958725	2.19674	0.0499984	0.0254904	0.179758	0.117089
chr6	134997569	134997656	7975958	0	-	0.425287	(0.42,0.455]	chr6	609757	3	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	HBS1L	ENSG00000112339.15	ENST00000367837.10:ENST00000527578.5:ENST00000415177.6:ENST00000367826.6:ENST00000533274.5:ENST00000526100.5:ENST00000529641.5:ENST00000527507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	20	2	1.72071	1.958725	2.19674	0.0499984	0.0254904	0.179758	0.117089
chr8	73293598	73293612	9888206	0	-	0.5	(0.49,0.53]	chr8	747635	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5	protein_coding	protein_coding	protein_coding	protein_coding	41	186	2	1.3386	1.95859	2.57858	0.0154832	2.68818e-6	0.0836691	9.22725e-5
chrM	3592	3688	19377175	0	+	0.46875	(0.455,0.49]	chrM	1649799	4	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	138	491	2	1.85859	1.958335	2.05808	1.35315e-4	2.27987e-5	0.00231202	5.96896e-4
chrX	153948848	153948948	19275567	0	-	0.55	(0.53,0.59]	chrX	1637875	14	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	16	72	2	1.69635	1.9583249999999999	2.2203	0.00701835	0.0016462	0.0477662	0.0163443
chr9	128256018	128256113	10864130	0	-	0.578947	(0.53,0.59]	chr9	823498	3	UTR3	UTR3:EXON_MRNA	GOLGA2	ENSG00000167110.18	ENST00000421699.7:ENST00000611957.4:ENST00000610329.4	protein_coding	protein_coding	protein_coding	protein_coding	12	55	2	1.83149	1.958255	2.08502	0.00828532	0.00570336	0.0543012	0.0415928
chr22	20586604	20586704	18299200	0	+	0.68	(0.59,1]	chr22	1553515	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000489651.5:ENST00000473244.5:ENST00000493216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	86	2	1.62114	1.95801	2.29488	0.0192442	0.00407435	0.0966228	0.0324137
chr22	19443275	19443374	18433516	0	-	0.434343	(0.42,0.455]	chr22	1570857	17	UTR3	UTR3:EXON_MRNA:INTRON	C22orf39:HIRA	ENSG00000242259.9:ENSG00000100084.14	ENST00000509549.5:ENST00000452818.1:ENST00000399562.9:ENST00000399568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	35	2	1.91899	1.958	1.99701	0.0235036	0.00718351	0.111072	0.0482184
chr6	110894597	110894697	7331128	0	+	0.31	(0.29,0.33]	chr6	563690	7	UTR3	UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	30	2	1.81695	1.9577749999999998	2.0986	0.0105563	0.00919301	0.0637867	0.0581197
chr11	62852282	62852381	12411558	0	-	0.50505	(0.49,0.53]	chr11	961813	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000668048.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	34	150	2	1.48079	1.95771	2.43463	0.011327	1.28758e-5	0.0668976	3.38748e-4
chr6	31629238	31629334	7115827	0	+	0.614583	(0.59,1]	chr6	545854	2	CDS	CDS:EXON_MRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000483470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	70	2	1.37159	1.95758	2.54357	0.0538397	0.00276959	0.198494	0.0240579
chr4	87139358	87139457	4941164	0	+	0.30303	(0.29,0.33]	chr4	405799	38	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	20	54	2	1.64584	1.9574799999999999	2.26912	0.0122524	4.432e-4	0.0705132	0.00596914
chr5	79170233	79170284	6661740	0	-	0.431373	(0.42,0.455]	chr5	514346	1	EXON_SMALL	EXON_SMALL:INTRON	DMGDH:RNY3P1	ENSG00000132837.15:ENSG00000201955.1	ENST00000520388.5:ENST00000518707.1:ENST00000365085.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:processed_transcript	19	67	2	1.88612	1.95736	2.0286	0.00302631	0.00201444	0.0257942	0.0197874
chr4	144110653	144110749	5696543	0	-	0.322917	(0.29,0.33]	chr4	451524	15	UTR3	UTR3:EXON_MRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8	protein_coding	protein_coding	protein_coding	protein_coding	35	101	2	1.86447	1.9572850000000002	2.0501	0.00434315	1.46711e-4	0.0339178	0.0024610500000000002
chr1	155478480	155478579	1309209	0	-	0.444444	(0.42,0.455]	chr1	132425	7	CDS	CDS:UTR3:EXON_MRNA	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	24	2	1.87908	1.9572	2.03532	0.040947	0.0189336	0.163285	0.0958835
chr19	49806847	49806936	17372875	0	+	0.449438	(0.42,0.455]	chr19	1443757	2	UTR3	UTR3:EXON_MRNA	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000359032.9:ENST00000601356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	34	2	1.79613	1.9569899999999998	2.11785	0.0154862	0.0121028	0.0836691	0.0701019
chr1	162525641	162525741	507519	0	+	0.35	(0.33,0.36]	chr1	54762	32	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	1.81447	1.9569050000000001	2.09934	0.0171093	0.0120497	0.0903794	0.0694419
chr22	19175671	19175763	18431149	0	-	0.673913	(0.59,1]	chr22	1570486	2	UTR3	UTR3:EXON_MRNA	SLC25A1	ENSG00000100075.10	ENST00000215882.10:ENST00000451283.5:ENST00000470922.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	140	2	1.76767	1.95654	2.14541	0.00543287	0.00231672	0.0398853	0.0219785
chr3	155870796	155870870	3823971	0	+	0.797297	(0.59,1]	chr3	326136	3	UTR5	UTR5:EXON_MRNA	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.87297	1.95609	2.03921	0.0371471	0.0308113	0.151849	0.130016
chr6	33199600	33199696	7121259	0	+	0.395833	(0.39,0.42]	chr6	547371	1	EXON_SMALL	EXON_SMALL	RNY4P10	ENSG00000202441.2	ENST00000365571.2	misc_RNA	misc_RNA	misc_RNA	misc_RNA	21	70	2	1.7338	1.95591	2.17802	0.00504929	6.18726e-4	0.0373349	0.00822794
chr13	25097096	25097195	13647294	0	+	0.434343	(0.42,0.455]	chr13	1075795	9	CDS	CDS:EXON_MRNA	PABPC3	ENSG00000151846.9	ENST00000281589.5	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	1.58516	1.9559099999999998	2.32666	0.0389398	9.50599e-4	0.158547	0.0107235
chr1	32365924	32366024	922261	0	-	0.59	(0.53,0.59]	chr1	97129	14	UTR3	UTR3:EXON_MRNA	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	34	2	1.60161	1.955745	2.30988	0.0451605	0.00643853	0.167576	0.0452349
chr5	180574100	180574200	6416534	0	+	0.55	(0.53,0.59]	chr5	499474	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	7	34	2	1.93217	1.955725	1.97928	0.0218546	0.0149802	0.104785	0.0814081
chr19	39433569	39433665	17563226	0	-	0.583333	(0.53,0.59]	chr19	1475628	1	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS16	ENSG00000105193.9	ENST00000251453.8:ENST00000339471.8:ENST00000599539.5:ENST00000601655.5:ENST00000601390.1:ENST00000602153.5:ENST00000595386.1:ENST00000599705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	39	2	1.87133	1.9554	2.03947	0.0308819	0.00610305	0.130016	0.0439421
chr3	152463582	152463682	3818514	0	+	0.31	(0.29,0.33]	chr3	325707	13	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	30	77	2	1.9161	1.9548999999999999	1.9937	0.00103665	0.00101878	0.0121023	0.0115214
chr8	144791843	144791914	10150951	0	-	0.661972	(0.59,1]	chr8	764129	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RPL8:MIR6850	ENSG00000161016.18:ENSG00000283764.1	ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5:ENST00000612162.1:ENST00000531767.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	44	343	2	1.79812	1.954825	2.11153	0.00165003	4.26144e-4	0.0163614	0.00617267
chr16	89562334	89562376	15810097	0	+	0.619048	(0.59,1]	chr16	1258679	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000452368.7:ENST00000393099.3:ENST00000399461.8:ENST00000570149.1:ENST00000472354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	33	254	2	1.80753	1.954755	2.10198	0.00195059	8.83934e-4	0.0185936	0.0107731
chr11	3723156	3723255	12238212	0	-	0.424242	(0.42,0.455]	chr11	945599	1	CDS	CDS:EXON_MRNA	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000397004.8:ENST00000397007.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	28	2	1.86513	1.95464	2.04415	0.0357107	0.0101476	0.147298	0.0627153
chr7	128771135	128771234	8521868	0	+	0.464646	(0.455,0.49]	chr7	650198	21	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	12	48	2	1.71363	1.9545149999999998	2.1954	0.0246293	0.00127219	0.114941	0.0135105
chr9	83969251	83969349	10712867	0	-	0.377551	(0.36,0.39]	chr9	810477	13	UTR3	UTR3:EXON_MRNA:PRIMIRNA	HNRNPK:MIR7-1	ENSG00000165119.21:ENSG00000284179.1	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1:ENST00000384871.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	48	149	2	1.94665	1.95442	1.96219	4.65007e-4	2.18229e-4	0.00658446	0.00337543
chr6	37175141	37175237	7136305	0	+	0.666667	(0.59,1]	chr6	549953	12	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	43	342	2	1.82128	1.9543849999999998	2.08749	0.00266394	2.82136e-4	0.0240522	0.00415764
chr8	18057243	18057340	9732803	0	-	0.381443	(0.36,0.39]	chr8	736286	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASAH1	ENSG00000104763.20	ENST00000637790.2:ENST00000636009.1:ENST00000520781.6:ENST00000381733.9:ENST00000637991.1:ENST00000637752.1:ENST00000637528.1:ENST00000636691.1:ENST00000637609.1:ENST00000637922.1:ENST00000636171.1:ENST00000636701.1:ENST00000636050.1:ENST00000638069.1:ENST00000636160.1:ENST00000637343.1:ENST00000637244.1:ENST00000636563.1:ENST00000637857.1:ENST00000637014.1:ENST00000518746.2:ENST00000638028.1:ENST00000635756.1:ENST00000636577.1:ENST00000637095.1:ENST00000636494.1:ENST00000637636.1:ENST00000637429.1:ENST00000637013.1:ENST00000637484.1:ENST00000636128.1:ENST00000636920.1:ENST00000635998.1:ENST00000635944.1:ENST00000636033.1:ENST00000636997.1:ENST00000636815.1:ENST00000636455.1:ENST00000314146.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	32	2	1.66836	1.953925	2.23949	0.0474647	0.00261122	0.17993	0.0230705
chr1	150576864	150576964	1288946	0	-	0.39	(0.36,0.39]	chr1	128249	28	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	26	2	1.53109	1.9539149999999998	2.37674	0.0522406	0.00529284	0.19442	0.0390084
chr2	174720318	174720416	2221022	0	+	0.27551	[0,0.29]	chr2	203052	1	INTRON	INTRON	AC018890.6	ENSG00000236449.2	ENST00000442996.1	lncRNA	lncRNA	lncRNA	lncRNA	56	130	2	1.69617	1.953905	2.21164	0.00160291	4.79803e-5	0.0169168	9.91058e-4
chr2	106698099	106698195	2825361	0	-	0.40625	(0.39,0.42]	chr2	252231	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P12	ENSG00000214199.3	ENST00000443590.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	35	115	2	1.76614	1.953875	2.14161	0.00138415	2.5366e-4	0.014318000000000001	0.00415649
chr12	53018936	53019006	12884411	0	+	0.342857	(0.33,0.36]	chr12	1001738	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1:ENST00000550025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	58	2	1.71741	1.95358	2.18975	0.0178699	3.94074e-4	0.0918323	0.00541075
chr5	175628187	175628278	6397822	0	+	0.582418	(0.53,0.59]	chr5	496827	1	EXON_SMALL	EXON_SMALL	RN7SKP148	ENSG00000222111.1	ENST00000410179.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	97	357	2	1.0426	1.95336	2.8641200000000002	0.0210633	3.62896e-7	0.101894	1.89214e-5
chr16	53157058	53157154	15665900	0	+	0.291667	(0.29,0.33]	chr16	1245065	10	CDS	CDS:UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000562785.1	protein_coding	protein_coding	protein_coding	protein_coding	8	22	2	1.66431	1.953285	2.24226	0.0306054	0.0225076	0.130226	0.10505
chr12	19457460	19457554	13233342	0	-	0.446809	(0.42,0.455]	chr12	1037586	14	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P4	ENSG00000245205.3	ENST00000359165.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	39	2	1.68865	1.953165	2.21768	0.0276098	0.00277726	0.124664	0.0241009
chr15	90967130	90967202	15439141	0	-	0.430556	(0.42,0.455]	chr15	1221338	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000560423.5:ENST00000442656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	39	2	1.68865	1.953165	2.21768	0.0276098	0.00277726	0.124664	0.0241009
chr18	56753225	56753275	17136669	0	-	0.46	(0.455,0.49]	chr18	1406988	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206865.1	ENST00000384138.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	88	311	2	1.67023	1.953055	2.23588	7.18723e-4	1.24516e-5	0.00862126	3.61524e-4
chr19	7962399	7962497	17447934	0	-	0.316327	(0.29,0.33]	chr19	1458189	9	UTR3	UTR3:EXON_MRNA:INTRON	ELAVL1	ENSG00000066044.15	ENST00000407627.7:ENST00000596154.5	protein_coding	protein_coding	protein_coding	protein_coding	13	35	2	1.79223	1.952685	2.11314	0.0151293	0.00327704	0.0823648	0.0274403
chr5	44809479	44809563	5961516	0	+	0.690476	(0.59,1]	chr5	467190	6	CDS	CDS:EXON_MRNA	MRPS30	ENSG00000112996.11	ENST00000507110.6	protein_coding	protein_coding	protein_coding	protein_coding	7	54	2	1.66121	1.95259	2.24397	0.0272831	0.0206682	0.120977	0.0997234
chr6	26156390	26156490	7101283	0	+	0.69	(0.59,1]	chr6	542803	1	CDS_START	CDS_START:CDS:EXON_MRNA	H1-4	ENSG00000168298.7	ENST00000304218.6	protein_coding	protein_coding	protein_coding	protein_coding	41	354	2	1.49082	1.9523350000000002	2.41385	0.00996952	5.77707e-5	0.0619379	0.00127988
chr12	49764060	49764157	12869283	0	+	0.494845	(0.49,0.53]	chr12	999645	13	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	25	100	2	1.86898	1.9522650000000001	2.03555	0.00307823	4.67461e-4	0.0273077	0.00618135
chr12	108646803	108646903	13530491	0	-	0.32	(0.29,0.33]	chr12	1063929	18	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6:ENST00000541050.5:ENST00000546705.5	protein_coding	protein_coding	protein_coding	protein_coding	15	39	2	1.31574	1.952095	2.58845	0.0496396	4.30021e-4	0.186234	0.00581002
chr4	17800849	17800947	5337568	0	-	0.285714	[0,0.29]	chr4	429240	3	UTR3	UTR3:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	24	60	2	1.49363	1.95209	2.41055	0.0182345	1.28895e-4	0.0925808	0.00223039
chr19	19505671	19505770	17263976	0	+	0.525253	(0.49,0.53]	chr19	1426397	3	UTR3	UTR3:EXON_MRNA	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	25	2	1.85272	1.9519549999999999	2.05119	0.0360743	0.0211739	0.145024	0.101864
chr5	95794516	95794613	6108501	0	+	0.340206	(0.33,0.36]	chr5	478272	6	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	20	60	2	1.34519	1.9513850000000001	2.55758	0.0324525	9.43135e-5	0.136459	0.00171995
chr1	29119361	29119459	121643	0	+	0.387755	(0.36,0.39]	chr1	14751	27	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	37	2	1.78505	1.95128	2.11751	0.0228572	0.00296338	0.108215	0.0253798
chr6	28154313	28154412	7105794	0	+	0.484848	(0.455,0.49]	chr6	543601	4	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	7	28	2	1.93369	1.95122	1.96875	0.0480352	0.00999269	0.180552	0.0620664
chr16	1963202	1963256	15823825	0	-	0.462963	(0.455,0.49]	chr16	1261863	2	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	65	2	1.70293	1.9510649999999998	2.1992	0.00584567	0.00132292	0.042264	0.0144234
chr7	155309148	155309247	8632665	0	+	0.383838	(0.36,0.39]	chr7	659289	9	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9	protein_coding	protein_coding	protein_coding	protein_coding	26	78	2	1.90199	1.951055	2.00012	0.00132217	0.00122396	0.0144203	0.0130695
chr7	151519607	151519703	9131540	0	-	0.791667	(0.59,1]	chr7	698144	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RHEB	ENSG00000106615.10	ENST00000262187.10:ENST00000478470.5:ENST00000496004.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	60	2	1.74555	1.9509249999999998	2.1563	0.0444308	0.00708052	0.165174	0.0478776
chrX	1389434	1389532	18925599	0	-	0.673469	(0.59,1]	chrX	1612959	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	113	2	1.77756	1.9505850000000002	2.12361	0.0106373	0.00256028	0.0647285	0.0234951
chr5	66179263	66179362	6006643	0	+	0.272727	[0,0.29]	chr5	470613	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREK1	ENSG00000153914.16	ENST00000334121.11:ENST00000284041.7:ENST00000519259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	16	2	1.94841	1.950335	1.95226	0.0427374	0.0282226	0.168094	0.124386
chr17	46756788	46756884	16246445	0	+	0.385417	(0.36,0.39]	chr17	1315970	11	UTR3	UTR3:EXON_MRNA	NSF	ENSG00000073969.18	ENST00000398238.8	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.61529	1.9497449999999998	2.2842	0.0466766	0.0049656	0.171348	0.0381176
chr17	41688884	41688961	16226818	0	+	0.701299	(0.59,1]	chr17	1312493	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	46	363	2	1.76101	1.9495550000000001	2.1381	0.00256832	2.3047e-4	0.0235679	0.00353002
chr8	47837349	47837419	9816140	0	-	0.4	(0.39,0.42]	chr8	742621	3	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.40975	1.9494150000000001	2.48908	0.0492699	0.0101318	0.177329	0.0626311
chr1	77565639	77565739	1110633	0	-	0.41	(0.39,0.42]	chr1	111602	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	19	2	1.89968	1.949395	1.99911	0.0477207	0.0298458	0.17993	0.130016
chr12	127156808	127156908	13145882	0	+	0.41	(0.39,0.42]	chr12	1027400	56	INTRON	INTRON	RP11-955H22.5	ENSG00000286016.1	ENST00000650869.1	lncRNA	lncRNA	lncRNA	lncRNA	5	19	2	1.89968	1.949395	1.99911	0.0477207	0.0298458	0.17993	0.130016
chr12	24816510	24816609	13255721	0	-	0.292929	(0.29,0.33]	chr12	1038842	66	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	25	65	2	1.76272	1.9492600000000002	2.1358	0.00224781	0.00165938	0.0207894	0.0172963
chr3	152465380	152465480	3818532	0	+	0.32	(0.29,0.33]	chr3	325707	31	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	39	100	2	1.88497	1.94903	2.01309	0.00103644	3.2261e-4	0.0121949	0.0046122
chr13	27430543	27430621	13658015	0	+	0.397436	(0.39,0.42]	chr13	1076470	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	GTF3A	ENSG00000122034.17	ENST00000381140.10:ENST00000435781.5:ENST00000419181.5:ENST00000438571.5:ENST00000466776.5:ENST00000470606.5:ENST00000493903.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	29	2	1.79377	1.94901	2.10425	0.0299302	0.00810106	0.129773	0.0528637
chr10	5766240	5766295	11352458	0	-	0.454545	(0.42,0.455]	chr10	865736	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1:ENST00000447751.5:ENST00000380181.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	37	2	1.63684	1.9489049999999999	2.26097	0.0246118	0.00404179	0.114882	0.032143
chr11	74840518	74840618	12020750	0	+	0.53	(0.49,0.53]	chr11	926732	39	UTR3	UTR3:EXON_MRNA:INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5:ENST00000527301.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.90685	1.948645	1.99044	0.0534351	0.0435903	0.184995	0.170594
chr17	42842966	42843065	16230341	0	+	0.494949	(0.49,0.53]	chr17	1313600	15	UTR3	UTR3:EXON_MRNA	PSME3	ENSG00000131467.11	ENST00000545225.5:ENST00000541124.5:ENST00000622892.4:ENST00000590720.6:ENST00000441946.6:ENST00000293362.7	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.90685	1.948645	1.99044	0.0534351	0.0435903	0.184995	0.170594
chr7	129054250	129054350	9061180	0	-	0.52	(0.49,0.53]	chr7	691885	2	SS5_PROX	SS5_PROX:INTRON	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10:ENST00000471234.5:ENST00000482320.5:ENST00000471166.1	protein_coding	protein_coding	protein_coding	protein_coding	4	18	2	1.90685	1.948645	1.99044	0.0534351	0.0435903	0.184995	0.170594
chr11	65352625	65352721	11984148	0	+	0.59375	(0.59,1]	chr11	920300	10	UTR3	UTR3:EXON_MRNA	DPF2	ENSG00000133884.10	ENST00000528416.6:ENST00000415073.6:ENST00000252268.8:ENST00000524666.5:ENST00000532052.1:ENST00000531989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	42	2	1.93269	1.948315	1.96394	0.0453144	0.0257004	0.174798	0.116399
chr10	73760115	73760215	11115745	0	+	0.63	(0.59,1]	chr10	845850	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1:ENST00000634508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	50	2	1.8502	1.9477	2.0452	0.0334531	0.0179494	0.140296	0.0939469
chr19	3979328	3979382	17430205	0	-	0.611111	(0.59,1]	chr19	1454701	1	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000596417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	211	2	1.39829	1.947485	2.49668	0.0197909	9.85964e-5	0.0961478	0.00178452
chr22	29299262	29299331	18336727	0	+	0.637681	(0.59,1]	chr22	1558217	2	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5:ENST00000483629.5:ENST00000360091.3:ENST00000610553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	58	2	1.93269	1.94732	1.96195	0.0257004	0.0144738	0.116399	0.0790046
chr1	171557691	171557781	537268	0	+	0.577778	(0.53,0.59]	chr1	57662	6	CDS	CDS:EXON_MRNA	PRRC2C	ENSG00000117523.17	ENST00000647382.2:ENST00000367742.7:ENST00000338920.8:ENST00000426496.6:ENST00000495585.1	protein_coding	protein_coding	protein_coding	protein_coding	31	136	2	1.63197	1.94701	2.26205	0.00333067	1.96407e-4	0.0286606	0.00311664
chr15	66502910	66502983	15353016	0	-	0.30137	(0.29,0.33]	chr15	1212577	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5:ENST00000561554.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	58	2	1.62519	1.946945	2.2687	0.0201432	1.32894e-4	0.0984041	0.00247309
chr2	11183237	11183336	2511606	0	-	0.373737	(0.36,0.39]	chr2	226811	36	UTR3	UTR3:EXON_MRNA	ROCK2	ENSG00000134318.14	ENST00000315872.11:ENST00000616279.4:ENST00000401753.5	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	1.72655	1.94686	2.16717	0.033108	0.0152504	0.13754	0.0828908
chr2	159764625	159764674	2163202	0	+	0.367347	(0.36,0.39]	chr2	199217	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	23	2	1.72655	1.94686	2.16717	0.033108	0.0152504	0.13754	0.0828908
chr7	155308555	155308654	8632659	0	+	0.383838	(0.36,0.39]	chr7	659289	3	UTR3	UTR3:EXON_MRNA	INSIG1	ENSG00000186480.13	ENST00000344756.8:ENST00000340368.9:ENST00000342407.5:ENST00000476756.1	protein_coding	protein_coding	protein_coding	protein_coding	33	97	2	1.81226	1.9465949999999999	2.08093	0.00123897	4.95656e-4	0.0136917	0.00647104
chr1	40422101	40422195	154036	0	+	0.553191	(0.53,0.59]	chr1	19281	1	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	18	78	2	1.53952	1.946255	2.35299	0.0106619	8.09771e-4	0.064876	0.0100672
chr4	17623895	17623993	4734385	0	+	0.265306	[0,0.29]	chr4	392802	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	25	2	1.72784	1.945965	2.16409	0.0182267	0.0125675	0.0945306	0.0716375
chr1	31906906	31907003	921169	0	-	0.257732	[0,0.29]	chr1	96904	6	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	42	98	2	1.93174	1.945945	1.96015	7.57752e-4	4.20997e-4	0.00946219	0.00571742
chrX	41347368	41347468	18669491	0	+	0.59	(0.53,0.59]	chrX	1592238	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000616050.3:ENST00000647477.1:ENST00000611968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	30	2	1.65775	1.945905	2.23406	0.0573191	0.00870728	0.196623	0.0558165
chr5	95796069	95796166	6108517	0	+	0.319588	(0.29,0.33]	chr5	478272	22	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	18	50	2	1.89656	1.9457900000000001	1.99502	0.00981789	0.00134133	0.06149	0.0139825
chr1	26278145	26278239	108899	0	+	0.553191	(0.53,0.59]	chr1	12966	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000252992.8:ENST00000453146.1:ENST00000469609.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	45	2	1.73751	1.94577	2.15403	0.0118065	0.0111675	0.0686664	0.0665375
chr12	112405323	112405376	13545887	0	-	0.433962	(0.42,0.455]	chr12	1066131	1	CDS	CDS:EXON_MRNA	RPL6	ENSG00000089009.16	ENST00000202773.14:ENST00000553205.1:ENST00000424576.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	43	2	1.26755	1.945505	2.62346	0.0396423	0.00164881	0.161272	0.0163523
chr15	60364428	60364523	15316879	0	-	0.484211	(0.455,0.49]	chr15	1208971	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000560014.5:ENST00000504475.6:ENST00000421017.6:ENST00000559176.5:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000560389.5:ENST00000559725.5:ENST00000559350.5:ENST00000558986.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	38	2	1.89004	1.94542	2.0008	0.0129467	0.00821956	0.0724783	0.0534646
chr1	205716492	205716591	1462020	0	-	0.353535	(0.33,0.36]	chr1	147460	38	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	16	44	2	1.88903	1.94534	2.00165	0.00883549	0.00222086	0.0563505	0.0211992
chr3	196349544	196349644	4664960	0	-	0.46	(0.455,0.49]	chr3	385869	20	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	13	49	2	1.87851	1.945215	2.01192	0.0092042	0.00331234	0.0583232	0.0276741
chr3	10115701	10115801	3302240	0	+	0.55	(0.53,0.59]	chr3	290636	1	CDS_START	CDS_START:CDS:EXON_MRNA	BRK1	ENSG00000254999.4	ENST00000530758.2	protein_coding	protein_coding	protein_coding	protein_coding	15	70	2	1.30288	1.945035	2.58719	0.0404382	2.07067e-4	0.163285	0.00324727
chr6	67887065	67887164	7784131	0	-	0.616162	(0.59,1]	chr6	596229	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	70	533	2	1.8429	1.9446750000000002	2.04645	7.4908e-4	4.01513e-4	0.00895984	0.00590975
chr2	47429741	47429841	1784777	0	+	0.39	(0.36,0.39]	chr2	172479	1	CDS	CDS:EXON_MRNA	MSH2	ENSG00000095002.15	ENST00000543555.6:ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000233146.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	44	2	1.32126	1.944565	2.56787	0.0471477	4.4684e-4	0.17993	0.00601445
chr15	50559417	50559515	15275407	0	-	0.530612	(0.53,0.59]	chr15	1205070	24	UTR3	UTR3:EXON_MRNA:INTRON	TRPM7	ENSG00000092439.16	ENST00000561267.5:ENST00000646667.1	protein_coding	protein_coding	protein_coding	protein_coding	8	38	2	1.92179	1.94456	1.96733	0.022694	0.0100259	0.105117	0.0623334
chr6	28158668	28158767	7105838	0	+	0.414141	(0.39,0.42]	chr6	543601	48	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	14	52	2	1.50045	1.94456	2.38867	0.0335886	4.20914e-4	0.1408	0.00571687
chr5	72205239	72205337	6027849	0	+	0.357143	(0.33,0.36]	chr5	472574	1	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	13	37	2	1.74061	1.94447	2.14833	0.0162558	0.00253487	0.0866586	0.0233955
chrX	154352847	154352924	19278002	0	-	0.623377	(0.59,1]	chrX	1638262	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000444578.1:ENST00000466325.1:ENST00000415241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.79051	1.94442	2.09833	0.0396851	0.0150311	0.161349	0.0816517
chr7	74196549	74196644	8334076	0	+	0.578947	(0.53,0.59]	chr7	634971	14	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	38	2	1.90942	1.94435	1.97928	0.0218546	0.0105233	0.104785	0.0644466
chr1	155729041	155729122	484492	0	+	0.419753	(0.39,0.42]	chr1	50981	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DAP3	ENSG00000132676.16	ENST00000471642.6:ENST00000471214.5:ENST00000343043.7:ENST00000368336.10:ENST00000535183.5:ENST00000421487.6:ENST00000470830.5:ENST00000497826.5:ENST00000463575.5:ENST00000479151.5:ENST00000466384.5:ENST00000462978.1:ENST00000477394.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	47	2	1.50045	1.9443450000000002	2.38824	0.0335886	6.81913e-4	0.1408	0.00834704
chr3	100719974	100720058	3637497	0	+	0.333333	(0.33,0.36]	chr3	311832	1	CDS	CDS:EXON_MRNA	TFG	ENSG00000114354.15	ENST00000675047.1:ENST00000490574.6:ENST00000675543.1:ENST00000676308.1:ENST00000675499.1:ENST00000674699.1:ENST00000418917.7:ENST00000675553.1:ENST00000620299.5:ENST00000675246.1:ENST00000675692.1:ENST00000676276.1:ENST00000676054.1:ENST00000675890.1:ENST00000675011.1:ENST00000675586.1:ENST00000674645.1:ENST00000675958.1:ENST00000674798.1:ENST00000676010.1:ENST00000675591.1:ENST00000479672.6:ENST00000675420.1:ENST00000674615.1:ENST00000676431.1:ENST00000674758.1:ENST00000240851.9:ENST00000675243.1:ENST00000676111.1:ENST00000476228.5:ENST00000463568.6:ENST00000676395.1:ENST00000487505.6:ENST00000615993.2:ENST00000676455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	19	2	1.8112	1.94428	2.07736	0.0442037	0.0257865	0.172163	0.116737
chr12	101405843	101405934	13506326	0	-	0.32967	(0.29,0.33]	chr12	1061621	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ARL1	ENSG00000120805.14	ENST00000261636.13:ENST00000539055.5:ENST00000536227.5:ENST00000551688.1:ENST00000551828.5:ENST00000551671.5:ENST00000551092.5:ENST00000549283.1:ENST00000549302.1:ENST00000548070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	39	2	1.69287	1.94419	2.19551	0.00974544	0.00356761	0.0611259	0.0301227
chr11	85958552	85958651	12525715	0	-	0.272727	[0,0.29]	chr11	972155	15	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	20	57	2	1.37916	1.9441350000000002	2.50911	0.0445107	6.3959e-5	0.172163	0.00125537
chr2	231460370	231460440	3226776	0	-	0.371429	(0.36,0.39]	chr2	283869	1	EXON_SMALL	EXON_SMALL:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCL:SNORD82	ENSG00000115053.17:ENSG00000202400.1	ENST00000322723.9:ENST00000676514.1:ENST00000677703.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1:ENST00000494618.1:ENST00000365530.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:nonsense_mediated_decay	21	64	2	1.28594	1.94391	2.60188	0.0320768	5.64194e-5	0.13353	0.00125274
chr4	102797218	102797316	5563925	0	-	0.346939	(0.33,0.36]	chr4	444349	30	UTR3	UTR3:EXON_MRNA	UBE2D3	ENSG00000109332.20	ENST00000453744.7:ENST00000394804.6:ENST00000618836.4:ENST00000394803.9:ENST00000394801.8:ENST00000343106.9:ENST00000508474.5:ENST00000503742.5:ENST00000321805.11:ENST00000350435.11:ENST00000338145.7:ENST00000349311.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	98	2	1.89928	1.94374	1.9882	0.00151921	3.74915e-4	0.0161825	0.00521494
chr21	14500528	14500597	18163952	0	-	0.463768	(0.455,0.49]	chr21	1542446	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000463807.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	20	2	1.92777	1.943375	1.95898	0.047107	0.0286531	0.172269	0.128685
chr1	36304709	36304801	141732	0	+	0.554348	(0.53,0.59]	chr1	17609	3	UTR3	UTR3:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	12	55	2	1.68604	1.942895	2.19975	0.0138057	0.00293564	0.0757871	0.0261315
chr10	96520877	96520976	11640087	0	-	0.323232	(0.29,0.33]	chr10	886559	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	17	2	1.89143	1.94279	1.99415	0.0333928	0.0332921	0.140128	0.137922
chrX	124083484	124083549	18852405	0	+	0.323077	(0.29,0.33]	chrX	1606296	2	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	17	2	1.89143	1.94279	1.99415	0.0333928	0.0332921	0.140128	0.137922
chr5	14653130	14653229	6462542	0	-	0.434343	(0.42,0.455]	chr5	502940	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	70	2	1.74603	1.942755	2.13948	0.0122565	5.20646e-4	0.0705329	0.00673778
chr16	29810389	29810477	15626820	0	+	0.511364	(0.49,0.53]	chr16	1239347	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MAZ:AC009133.24	ENSG00000103495.14:ENSG00000280607.1	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000568411.5:ENST00000563012.1:ENST00000568544.5:ENST00000568282.1:ENST00000565777.1:ENST00000562594.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	26	97	2	1.38591	1.9424649999999999	2.49902	0.0134038	9.11652e-5	0.0747342	0.00168187
chr12	62389892	62389988	12914371	0	+	0.395833	(0.39,0.42]	chr12	1006471	2	CDS	CDS:EXON_MRNA	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding	8	28	2	1.73522	1.94211	2.149	0.0216784	0.0149155	0.103158	0.0812412
chr21	8218486	8218585	18041203	0	+	0.515152	(0.49,0.53]	chr21	1530814	59	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	4553	17297	2	1.63102	1.94207	2.25312	2.8117e-4	1.27026e-6	0.00415519	5.41253e-5
chr5	70077408	70077502	6023205	0	+	0.319149	(0.29,0.33]	chr5	471869	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMN2	ENSG00000205571.14	ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000507458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	21	2	1.86069	1.94203	2.02337	0.0217631	0.021654	0.103926	0.103469
chr1	114717974	114718071	1239595	0	-	0.237113	[0,0.29]	chr1	121344	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000483407.1:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	138	2	1.80631	1.94199	2.07767	0.00121053	7.47151e-5	0.0135357	0.0014248
chr10	73249318	73249413	11570269	0	-	0.263158	[0,0.29]	chr10	880679	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MRPS16	ENSG00000182180.14	ENST00000479005.1:ENST00000372945.8:ENST00000372940.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	21	2	1.79922	1.94178	2.08434	0.0223458	0.0181581	0.106042	0.0945306
chr2	54972379	54972476	2666097	0	-	0.381443	(0.36,0.39]	chr2	238467	3	UTR3	UTR3:EXON_MRNA	RTN4	ENSG00000115310.18	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5	protein_coding	protein_coding	protein_coding	protein_coding	82	270	2	1.64511	1.9417650000000002	2.23842	0.00131006	9.51051e-6	0.0143093	2.64576e-4
chr13	52461072	52461172	13747097	0	+	0.35	(0.33,0.36]	chr13	1082829	1	CDS_START	CDS_START:CDS:EXON_MRNA	CKAP2	ENSG00000136108.15	ENST00000468284.1:ENST00000378034.7:ENST00000378037.9:ENST00000258607.10:ENST00000490903.5:ENST00000480747.1	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.80608	1.9417200000000001	2.07736	0.0442037	0.0416784	0.172163	0.157445
chr11	118602753	118602846	12159756	0	+	0.236559	[0,0.29]	chr11	937279	12	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	1.72772	1.9413	2.15488	0.0436536	0.0107311	0.170594	0.0652734
chr1	235109923	235110020	1560071	0	-	0.350515	(0.33,0.36]	chr1	156012	7	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	39	109	2	1.84682	1.941265	2.03571	7.07628e-4	4.75057e-4	0.00851746	0.0067154
chr1	632230	632326	491	0	+	0.427083	(0.42,0.455]	chr1	106	13	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	71	246	2	1.91918	1.9411	1.96302	2.29578e-4	1.11326e-4	0.00352524	0.00213212
chr3	197043148	197043246	4667415	0	-	0.397959	(0.39,0.42]	chr3	386231	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000469371.5:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	22	2	1.87119	1.941	2.01081	0.0373134	0.0207537	0.152293	0.100574
chr19	41306847	41306941	17334336	0	+	0.531915	(0.53,0.59]	chr19	1436801	4	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	110	2	1.77351	1.940755	2.108	0.00404818	4.29535e-4	0.0324137	0.00580549
chr1	27892070	27892162	910774	0	-	0.48913	(0.455,0.49]	chr1	95226	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPA2	ENSG00000117748.10	ENST00000373912.8:ENST00000419958.5:ENST00000373909.7:ENST00000313433.11	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.79605	1.94054	2.08503	0.0427708	0.0158994	0.168094	0.0856643
chr4	42070525	42070608	4810424	0	+	0.481928	(0.455,0.49]	chr4	397055	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	SLC30A9	ENSG00000014824.14	ENST00000513699.5:ENST00000264451.12:ENST00000509683.5:ENST00000505523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	24	2	1.79605	1.94054	2.08503	0.0427708	0.0158994	0.168094	0.0856643
chr1	47280724	47280821	985993	0	-	0.443299	(0.42,0.455]	chr1	104121	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	20	73	2	1.86112	1.94046	2.0198	0.00505434	0.0015649	0.0387703	0.0156889
chr11	34099760	34099858	11905492	0	+	0.377551	(0.36,0.39]	chr11	909587	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	49	2	1.68642	1.940455	2.19449	0.00774448	0.00263771	0.0507639	0.0239302
chr3	196051645	196051744	4663157	0	-	0.343434	(0.33,0.36]	chr3	385550	25	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	25	69	2	1.65968	1.9403199999999998	2.22096	0.00434103	6.14605e-4	0.0335517	0.00821597
chr6	34587386	34587485	7674074	0	-	0.545455	(0.53,0.59]	chr6	588118	2	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.84013	1.9402650000000001	2.0404	0.0362529	0.00973469	0.148525	0.0611259
chr7	152162496	152162591	9135177	0	-	0.484211	(0.455,0.49]	chr7	698363	5	CDS	CDS:UTR3:EXON_MRNA	KMT2C	ENSG00000055609.21	ENST00000360104.8:ENST00000262189.11:ENST00000418061.2:ENST00000680877.1:ENST00000424877.6:ENST00000679560.1:ENST00000683120.1:ENST00000679393.1:ENST00000683200.1:ENST00000680029.1:ENST00000683178.1:ENST00000683502.1:ENST00000684261.1:ENST00000682283.1:ENST00000473186.5:ENST00000684649.1:ENST00000679882.1:ENST00000683397.1:ENST00000684307.1:ENST00000683625.1:ENST00000684398.1:ENST00000683670.1:ENST00000680969.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	20	2	1.75044	1.9401899999999999	2.12994	0.0463133	0.0304832	0.170072	0.130204
chr1	29018369	29018442	120603	0	+	0.438356	(0.42,0.455]	chr1	14623	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	33	2	1.71996	1.93996	2.15996	0.0542346	0.00365851	0.199653	0.0299719
chr2	26215052	26215113	2565892	0	-	0.42623	(0.42,0.455]	chr2	230603	1	CDS	CDS:UTR3:EXON_MRNA	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	33	2	1.71996	1.93996	2.15996	0.0542346	0.00365851	0.199653	0.0299719
chr5	33456148	33456227	5927395	0	+	0.43038	(0.42,0.455]	chr5	464399	1	CDS	CDS:UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000504698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	33	2	1.71996	1.93996	2.15996	0.0542346	0.00365851	0.199653	0.0299719
chr6	34237228	34237317	7124259	0	+	0.831461	(0.59,1]	chr6	548229	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HMGA1	ENSG00000137309.20	ENST00000347617.10:ENST00000401473.7:ENST00000311487.9:ENST00000447654.5:ENST00000674029.1:ENST00000478214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	46	357	2	1.59781	1.939875	2.28194	0.00476462	1.24415e-4	0.0368333	0.00215999
chr9	128179326	128179415	10863845	0	-	0.595506	(0.59,1]	chr9	823426	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000476239.5:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5:ENST00000498156.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	37	2	1.55494	1.9397449999999998	2.32455	0.0520547	0.0511194	0.193787	0.182342
chrX	41342736	41342836	18669426	0	+	0.42	(0.39,0.42]	chrX	1592197	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000631641.2:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000642624.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000622198.5:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000645253.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000644260.1:ENST00000647286.1:ENST00000642687.1:ENST00000647373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	32	2	1.91489	1.939265	1.96364	0.0197788	0.00890556	0.0960939	0.0565003
chr19	54187160	54187223	17627796	0	-	0.666667	(0.59,1]	chr19	1488042	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBOAT7	ENSG00000125505.17	ENST00000437868.5:ENST00000431666.6:ENST00000245615.6:ENST00000338624.10:ENST00000449249.5:ENST00000391754.5:ENST00000414665.5:ENST00000453320.1:ENST00000464098.5:ENST00000474910.5:ENST00000491216.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	57	2	1.91544	1.9390450000000001	1.96265	0.0238491	0.0165875	0.112466	0.0878414
chr4	75655065	75655155	5472976	0	-	0.477778	(0.455,0.49]	chr4	438392	1	CDS	CDS:UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000507947.5:ENST00000676493.1:ENST00000676761.1:ENST00000677278.1:ENST00000510902.2:ENST00000678958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	35	2	1.92777	1.9389750000000001	1.95018	0.0286531	0.0063042	0.128685	0.044701
chr11	130069977	130070077	12206361	0	+	0.76	(0.59,1]	chr11	941967	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	APLP2	ENSG00000084234.18	ENST00000650012.1:ENST00000533616.5:ENST00000532456.5:ENST00000534761.5:ENST00000338167.10:ENST00000528499.5:ENST00000529701.1:ENST00000526330.5:ENST00000534001.1:ENST00000527702.5:ENST00000534582.5:ENST00000529235.5:ENST00000533713.5:ENST00000533618.5:ENST00000533195.5:ENST00000530132.5:ENST00000533532.5:ENST00000263574.9:ENST00000345598.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	50	2	1.72824	1.938905	2.14957	0.0471232	0.0126053	0.179872	0.0719957
chrX	81297509	81297604	18750146	0	+	0.389474	(0.36,0.39]	chrX	1600060	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SH3BGRL	ENSG00000131171.13	ENST00000373212.6:ENST00000481106.5:ENST00000463546.5:ENST00000474113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	31	2	1.86118	1.9388750000000001	2.01657	0.0121414	0.0118295	0.0699297	0.0692539
chr19	58545017	58545097	17413287	0	+	0.8125	(0.59,1]	chr19	1451172	3	CDS	CDS:UTR5:EXON_MRNA:SS3_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	12	97	2	1.40785	1.9385500000000002	2.46925	0.0398271	0.00109873	0.152926	0.0126772
chr4	1737240	1737328	4681060	0	+	0.556818	(0.53,0.59]	chr4	387982	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000484651.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000650779.1:ENST00000651817.1:ENST00000466077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	25	2	1.90953	1.9384299999999999	1.96733	0.0517711	0.022694	0.193577	0.105117
chr6	116039402	116039495	7346295	0	+	0.537634	(0.53,0.59]	chr6	564419	8	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-702N8.3:TPI1P3	ENSG00000287933.1:ENSG00000186743.2	ENST00000663064.1:ENST00000652856.1:ENST00000335020.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	5	25	2	1.90953	1.9384299999999999	1.96733	0.0517711	0.022694	0.193577	0.105117
chr13	28672338	28672432	13661231	0	+	0.37234	(0.36,0.39]	chr13	1076739	1	CDS	CDS:EXON_MRNA	POMP	ENSG00000132963.8	ENST00000460403.1:ENST00000380842.5	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	1.83418	1.938195	2.04221	0.00997757	0.00653435	0.0622177	0.0456317
chr11	9586448	9586517	11793773	0	+	0.449275	(0.42,0.455]	chr11	903106	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	WEE1	ENSG00000166483.12	ENST00000680141.1:ENST00000450114.7:ENST00000299613.10:ENST00000681684.1:ENST00000524612.5:ENST00000530712.6:ENST00000530175.5:ENST00000532275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	20	2	1.84101	1.9381650000000001	2.03532	0.040947	0.0352234	0.163285	0.142054
chrX	41346228	41346319	18669476	0	+	0.43956	(0.42,0.455]	chrX	1592228	1	CDS	CDS:UTR3:EXON_MRNA	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000542215.5:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000642763.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000643820.1:ENST00000646093.1:ENST00000616050.3:ENST00000647477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	20	2	1.84101	1.9381650000000001	2.03532	0.040947	0.0352234	0.163285	0.142054
chr17	7578572	7578659	16105695	0	+	0.333333	(0.33,0.36]	chr17	1296979	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SENP3-EIF4A1:EIF4A1:RP11-186B7.4	ENSG00000277957.1:ENSG00000161960.16:ENSG00000264772.6	ENST00000614237.1:ENST00000293831.13:ENST00000581621.1:ENST00000577269.5:ENST00000582746.5:ENST00000578324.5:ENST00000583389.5:ENST00000582050.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	8	23	2	1.81756	1.9380549999999999	2.05855	0.0223533	0.018622	0.106046	0.0952021
chr6	140894002	140894102	7999697	0	-	0.38	(0.36,0.39]	chr6	611477	278	INTRON	INTRON	RP11-515I12.1	ENSG00000234147.2	ENST00000650553.2:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	6	20	2	1.85489	1.9380350000000002	2.02118	0.0350721	0.0251625	0.141601	0.117055
chr1	148981641	148981740	460017	0	+	0.373737	(0.36,0.39]	chr1	45840	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PDE4DIP	ENSG00000178104.19	ENST00000524974.5:ENST00000585156.5:ENST00000618462.4:ENST00000369356.8:ENST00000369354.7:ENST00000369349.7:ENST00000369351.7:ENST00000479408.6:ENST00000313431.13:ENST00000529945.2:ENST00000467859.3:ENST00000530062.5:ENST00000491426.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	24	2	1.85874	1.9376550000000001	2.01657	0.0415243	0.0118295	0.164804	0.0692539
chr3	143058935	143059034	3793655	0	+	0.373737	(0.36,0.39]	chr3	323977	26	UTR3	UTR3:EXON_MRNA	U2SURP	ENSG00000163714.18	ENST00000473835.7	protein_coding	protein_coding	protein_coding	protein_coding	7	24	2	1.85874	1.9376550000000001	2.01657	0.0415243	0.0118295	0.164804	0.0692539
chr7	135393917	135394016	9083666	0	-	0.50505	(0.49,0.53]	chr7	693471	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CNOT4	ENSG00000080802.19	ENST00000541284.5:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	1.48824	1.937535	2.38683	0.0375277	0.012654	0.14721	0.0718207
chr11	5340984	5341078	12241502	0	-	0.329787	(0.29,0.33]	chr11	946157	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	57	2	1.65939	1.93715	2.21491	0.0164315	3.46562e-4	0.0873033	0.00487164
chr1	150219800	150219899	1288431	0	-	0.444444	(0.42,0.455]	chr1	128126	15	UTR3	UTR3:EXON_MRNA	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4	protein_coding	protein_coding	protein_coding	protein_coding	20	73	2	1.60931	1.9369900000000002	2.26467	0.00981873	4.17265e-4	0.0614916	0.00566841
chr4	56441761	56441860	4848535	0	+	0.373737	(0.36,0.39]	chr4	399424	2	CDS	CDS:UTR5:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	61	2	1.2941	1.9369550000000002	2.57981	0.0329842	1.27759e-4	0.138667	0.00221172
chr18	36160949	36161004	16825212	0	+	0.363636	(0.36,0.39]	chr18	1387640	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	26	2	1.73002	1.9368599999999998	2.1437	0.0340515	0.0164234	0.141465	0.0871351
chr1	47216779	47216877	985517	0	-	0.336735	(0.33,0.36]	chr1	104046	6	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	19	51	2	1.53009	1.93685	2.34361	0.00933823	0.00235002	0.0589275	0.0222173
chr16	70530744	70530830	15729729	0	+	0.465116	(0.455,0.49]	chr16	1252897	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10	protein_coding	protein_coding	protein_coding	protein_coding	12	44	2	1.78173	1.93648	2.09123	0.00905243	0.00741574	0.0574173	0.0492519
chr11	126265267	126265353	12645161	0	-	0.546512	(0.53,0.59]	chr11	981838	1	CDS	CDS:EXON_MRNA	SRPRA	ENSG00000182934.12	ENST00000332118.11:ENST00000532259.1:ENST00000531104.1:ENST00000527817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	28	2	1.60161	1.93637	2.27113	0.0451605	0.0178853	0.167576	0.0918323
chr5	37290017	37290116	6539923	0	-	0.343434	(0.33,0.36]	chr5	506493	20	UTR3	UTR3:EXON_MRNA	NUP155	ENSG00000113569.16	ENST00000231498.8	protein_coding	protein_coding	protein_coding	protein_coding	14	40	2	1.88124	1.936145	1.99105	0.00660193	0.0055161	0.0460328	0.0414985
chr17	63593395	63593493	16317588	0	+	0.408163	(0.39,0.42]	chr17	1323671	44	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	25	2	1.66154	1.935915	2.21029	0.0452475	0.0100911	0.174743	0.0625052
chr6	43777566	43777665	7159850	0	+	0.606061	(0.59,1]	chr6	553439	2	CDS	CDS:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000476772.5:ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000425836.7:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000518538.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000512683.1:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	29	212	2	1.7928	1.935895	2.07899	0.00313252	0.00187565	0.0276285	0.0180459
chr12	6936601	6936697	12715636	0	+	0.65625	(0.59,1]	chr12	987304	12	CDS	CDS:EXON_MRNA	ATN1	ENSG00000111676.15	ENST00000356654.8:ENST00000396684.3	protein_coding	protein_coding	protein_coding	protein_coding	8	63	2	1.66121	1.935865	2.21052	0.0272831	0.010462	0.120977	0.063428
chr1	32770962	32771061	130782	0	+	0.686869	(0.59,1]	chr1	16158	12	CDS	CDS:EXON_MRNA:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	5	42	2	1.90752	1.93584	1.96416	0.044741	0.0282297	0.166115	0.127287
chrX	48794064	48794164	18693026	0	+	0.66	(0.59,1]	chrX	1594414	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	11	85	2	1.39646	1.935715	2.47497	0.0420727	0.00177395	0.166851	0.0172819
chr7	135645467	135645531	8553313	0	+	0.390625	(0.39,0.42]	chr7	652903	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5:ENST00000490439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	31	2	1.75252	1.93537	2.11822	0.0297286	0.005418	0.130016	0.0409315
chr11	812534	812633	11758939	0	+	0.646465	(0.59,1]	chr11	898487	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPLP2	ENSG00000177600.9	ENST00000532004.5:ENST00000321153.9:ENST00000530797.5:ENST00000530398.1:ENST00000526222.5:ENST00000525722.1:ENST00000527517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	218	1653	2	1.92554	1.935125	1.94471	3.1397e-4	2.41864e-4	0.00484664	0.00366225
chr1	114732603	114732674	1239754	0	-	0.366197	(0.36,0.39]	chr1	121396	1	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding	13	43	2	1.92213	1.9345249999999998	1.94692	0.0192083	0.00300598	0.0943643	0.0256973
chr10	102160451	102160542	11226659	0	+	0.483516	(0.455,0.49]	chr10	854863	1	CDS	CDS:UTR3:EXON_MRNA	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000464969.6:ENST00000603946.5:ENST00000488254.6:ENST00000461421.5:ENST00000370007.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	35	2	1.80094	1.934485	2.06803	0.0265942	0.00562101	0.120205	0.041036
chr11	10800261	10800348	12272568	0	-	0.45977	(0.455,0.49]	chr11	948981	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000528839.1:ENST00000534272.1:ENST00000531180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	35	2	1.80094	1.934485	2.06803	0.0265942	0.00562101	0.120205	0.041036
chr2	208236794	208236889	3142426	0	-	0.326316	(0.29,0.33]	chr2	277681	7	UTR3	UTR3:EXON_MRNA	IDH1	ENSG00000138413.14	ENST00000345146.7:ENST00000446179.5:ENST00000415913.5:ENST00000484575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	34	2	1.3604	1.934475	2.50855	0.032126300000000003	0.0023535	0.133725	0.0222204
chr17	40392067	40392111	16538767	0	-	0.386364	(0.36,0.39]	chr17	1354563	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000578412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	22	2	1.54187	1.9343249999999999	2.32678	0.0425746	0.0193538	0.160556	0.0943643
chr5	43289546	43289645	6560153	0	-	0.343434	(0.33,0.36]	chr5	508332	22	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	23	68	2	1.45362	1.9341599999999999	2.4147	0.0189036	1.1745e-4	0.0934721	0.00206023
chr19	15239909	15239965	17484936	0	-	0.571429	(0.53,0.59]	chr19	1465306	1	CDS	CDS:EXON_MRNA	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6	protein_coding	protein_coding	protein_coding	protein_coding	8	34	2	1.39828	1.9341400000000002	2.47	0.0486819	0.0089333	0.175495	0.0567495
chr17	38921371	38921470	16218438	0	+	0.444444	(0.42,0.455]	chr17	1310821	27	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	17	63	2	1.88067	1.9341050000000002	1.98754	0.0067999	0.00160755	0.0464641	0.0160448
chr21	8400559	8400659	18041536	0	+	0.53	(0.49,0.53]	chr21	1530863	49	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1608	6100	2	1.8025	1.9341050000000002	2.06571	7.2343e-5	8.8748e-6	0.0015254	2.49638e-4
chr16	18792063	18792162	15877066	0	-	0.343434	(0.33,0.36]	chr16	1269296	5	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	30	87	2	1.84763	1.934075	2.02052	0.00260369	7.69729e-4	0.0238297	0.0091785
chr2	206160638	206160710	2337582	0	+	0.486111	(0.455,0.49]	chr2	211064	2	CDS	CDS:UTR3:EXON_MRNA	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000445505.5:ENST00000479587.1:ENST00000429769.5:ENST00000460760.1:ENST00000392222.7:ENST00000415904.1:ENST00000455150.1:ENST00000435123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	27	2	1.81931	1.9338899999999999	2.04847	0.0235519	0.0192065	0.108737	0.0943643
chr22	20125397	20125488	18297512	0	+	0.648352	(0.59,1]	chr22	1553211	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	69	2	1.65693	1.933725	2.21052	0.0211812	0.010462	0.102436	0.063428
chr1	202728450	202728548	1451709	0	-	0.357143	(0.33,0.36]	chr1	145774	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KDM5B	ENSG00000117139.18	ENST00000367265.9:ENST00000648676.1:ENST00000648338.1:ENST00000472822.6:ENST00000649339.1:ENST00000649542.1:ENST00000647757.1:ENST00000649400.1:ENST00000647747.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649230.1:ENST00000650506.1:ENST00000649770.1:ENST00000491153.2:ENST00000648469.1:ENST00000498276.2:ENST00000650417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	49	2	1.3574	1.933685	2.50997	0.0202696	9.74806e-4	0.0984041	0.0116117
chr4	75645529	75645613	5472868	0	-	0.547619	(0.53,0.59]	chr4	438363	1	CDS	CDS:UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	37	2	1.49715	1.93353	2.36991	0.0455868	0.00501452	0.175638	0.0370872
chr4	67651702	67651802	5453012	0	-	0.36	(0.33,0.36]	chr4	436139	21	INTRON	INTRON	UBA6	ENSG00000033178.13	ENST00000322244.10	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	1.57909	1.9335050000000003	2.28792	0.0532274	0.0239159	0.184818	0.112531
chr2	135168971	135169066	2080905	0	+	0.536842	(0.53,0.59]	chr2	195211	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RAB3GAP1	ENSG00000115839.18	ENST00000264158.13:ENST00000442034.5:ENST00000487003.5:ENST00000539493.2:ENST00000497080.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	37	2	1.48483	1.93337	2.38191	0.0472509	0.00477439	0.172726	0.0368489
chr12	54295248	54295333	13343374	0	-	0.541176	(0.53,0.59]	chr12	1049654	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.71269	1.93336	2.15403	0.0222391	0.0118065	0.104593	0.0686664
chr20	50082090	50082186	18004128	0	-	0.5625	(0.53,0.59]	chr20	1525944	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	76	2	1.65842	1.93317	2.20792	0.0083613	0.00116503	0.054565	0.0126614
chr19	48965842	48965916	17368088	0	+	0.621622	(0.59,1]	chr19	1442242	2	CDS	CDS:EXON_MRNA	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	26	204	2	1.75663	1.93312	2.10961	0.00534871	6.67759e-4	0.0406564	0.00820018
chr4	87336704	87336799	5517994	0	-	0.463158	(0.455,0.49]	chr4	441925	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-529H2.2:HSD17B11	ENSG00000255723.1:ENSG00000198189.11	ENST00000508163.1:ENST00000358290.9	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	32	2	1.79605	1.9320399999999998	2.06803	0.0427708	0.00562101	0.168094	0.041036
chr2	61513761	61513861	2690731	0	-	0.34	(0.33,0.36]	chr2	240413	3	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	23	2	1.57515	1.9315350000000002	2.28792	0.0299562	0.0239159	0.130016	0.112531
chr19	49108160	49108251	17368666	0	+	0.747253	(0.59,1]	chr19	1442430	5	CDS	CDS:UTR3:EXON_MRNA	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	65	2	1.8502	1.93128	2.01236	0.0334531	0.00765638	0.140296	0.0503696
chrX	153691974	153692054	18915599	0	+	0.6125	(0.59,1]	chrX	1611179	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000675713.1:ENST00000466243.1:ENST00000467402.1:ENST00000429147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	65	2	1.8502	1.93128	2.01236	0.0334531	0.00765638	0.140296	0.0503696
chr3	44750341	44750441	4149062	0	-	0.3	(0.29,0.33]	chr3	346666	17	UTR3	UTR3:EXON_MRNA:INTRON	KIAA1143	ENSG00000163807.6	ENST00000484437.1:ENST00000296121.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	29	2	1.31574	1.931085	2.54643	0.0496396	0.0026976	0.186234	0.0236059
chr1	24654945	24655037	101991	0	+	0.576087	(0.53,0.59]	chr1	11987	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1:ENST00000470243.5:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	64	2	1.8478	1.93032	2.01284	0.0069346	0.00319369	0.0473133	0.0267777
chrX	48791972	48792055	18692999	0	+	0.590361	(0.59,1]	chrX	1594399	1	CDS	CDS:EXON_MRNA	GATA1	ENSG00000102145.15	ENST00000651144.1:ENST00000376665.4:ENST00000376670.9	protein_coding	protein_coding	protein_coding	protein_coding	6	48	2	1.82129	1.93025	2.03921	0.0371471	0.0227814	0.151849	0.105293
chr16	11885180	11885274	15857005	0	-	0.393617	(0.39,0.42]	chr16	1266873	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GSPT1	ENSG00000103342.13	ENST00000434724.7:ENST00000439887.6:ENST00000565267.5:ENST00000563468.5:ENST00000420576.6:ENST00000564790.5:ENST00000562794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	34	2	1.60776	1.9301050000000002	2.25245	0.0291807	0.00427758	0.129773	0.0332717
chr15	90883167	90883266	15103394	0	+	0.555556	(0.53,0.59]	chr15	1188584	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	75	2	1.69858	1.92999	2.1614	0.0131369	7.79625e-4	0.073328	0.00927662
chr6	35834523	35834621	7677925	0	-	0.357143	(0.33,0.36]	chr6	588535	17	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	22	2	1.38823	1.9299300000000001	2.47163	0.0550274	0.0129725	0.190119	0.0724783
chr10	43386079	43386172	11461753	0	-	0.354839	(0.33,0.36]	chr10	873953	6	UTR3	UTR3:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	15	40	2	1.2007	1.9299050000000002	2.65911	0.0546403	4.11639e-4	0.189087	0.00604771
chr3	184027161	184027260	4622778	0	-	0.40404	(0.39,0.42]	chr3	381686	9	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	29	98	2	1.75675	1.929685	2.10262	0.00320664	2.99842e-4	0.0280721	0.00437751
chrX	30630297	30630385	18640861	0	+	0.522727	(0.49,0.53]	chrX	1590568	1	EXON_PSEUDO	EXON_PSEUDO	FTLP2	ENSG00000232368.1	ENST00000431458.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	79	2	1.86612	1.9295499999999999	1.99298	0.00504043	0.00101625	0.0386736	0.0113055
chr15	52162801	52162852	14935794	0	+	0.411765	(0.39,0.42]	chr15	1174279	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206995.1	ENST00000384268.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	129	399	2	1.42522	1.929445	2.4336700000000002	0.002342	1.17344e-6	0.0214159	5.03079e-5
chr22	20917582	20917670	18299855	0	+	0.772727	(0.59,1]	chr22	1553631	3	UTR5	UTR5:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	82	2	1.87297	1.9291800000000001	1.98539	0.0308113	0.0047232	0.130016	0.0365375
chr3	177023214	177023313	4593459	0	-	0.323232	(0.29,0.33]	chr3	379622	40	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	21	2	1.71387	1.929065	2.14426	0.0355849	0.0142448	0.147262	0.077929
chr5	139280453	139280551	6248584	0	+	0.326531	(0.29,0.33]	chr5	486926	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MATR3:SNHG4	ENSG00000280987.4:ENSG00000281398.4	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000648842.1:ENST00000361059.7:ENST00000506188.5:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000514694.5:ENST00000507197.5:ENST00000509644.5:ENST00000505016.2:ENST00000505522.6:ENST00000502394.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	21	2	1.71387	1.929065	2.14426	0.0355849	0.0142448	0.147262	0.077929
chr2	216205844	216205936	2380724	0	+	0.402174	(0.39,0.42]	chr2	213872	8	UTR3	UTR3:EXON_MRNA	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.87119	1.9289749999999999	1.98676	0.0439902	0.0373134	0.163596	0.152293
chr1	247877179	247877277	816526	0	+	0.295918	(0.29,0.33]	chr1	80729	8	UTR3	UTR3:EXON_MRNA	TRIM58	ENSG00000162722.9	ENST00000366481.4	protein_coding	protein_coding	protein_coding	protein_coding	10	25	2	1.36905	1.928955	2.48886	0.0494899	0.0055888	0.178101	0.0419759
chr1	205715103	205715202	1462006	0	-	0.313131	(0.29,0.33]	chr1	147460	24	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	12	30	2	1.50286	1.9288	2.35474	0.035536	0.00297618	0.147135	0.0254769
chr1	23309761	23309860	894700	0	-	0.232323	[0,0.29]	chr1	92818	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	27	2	1.81505	1.92862	2.04219	0.0409713	0.00477383	0.163285	0.0363623
chr16	2765501	2765600	15494930	0	+	0.575758	(0.53,0.59]	chr16	1227802	41	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	22	98	2	1.88582	1.92842	1.97102	0.00222385	0.00160041	0.0205788	0.0169168
chr17	7251383	7251471	16429208	0	-	0.715909	(0.59,1]	chr17	1339374	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTDNEP1:RP1-4G17.5	ENSG00000175826.12:ENSG00000262302.1	ENST00000574322.6:ENST00000573600.5:ENST00000574205.5:ENST00000318988.10:ENST00000572043.5:ENST00000575783.5:ENST00000571409.1:ENST00000577138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.67735	1.9281199999999998	2.17889	0.0534288	0.025085	0.184995	0.116848
chr1	951182	951238	825577	0	-	0.642857	(0.59,1]	chr1	81724	2	CDS	CDS:EXON_MRNA	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	48	2	1.73729	1.928115	2.11894	0.0303312	0.0293157	0.129874	0.128478
chr1	23068609	23068681	97631	0	+	0.430556	(0.42,0.455]	chr1	11259	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding	12	45	2	1.87571	1.92811	1.98051	0.0138685	0.00383646	0.0760883	0.0310411
chr12	56596277	56596374	13351644	0	-	0.402062	(0.39,0.42]	chr12	1051592	8	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	10	33	2	1.58577	1.9279449999999998	2.27012	0.0214904	0.00945558	0.102904	0.0594007
chr20	62387296	62387338	17861408	0	+	0.785714	(0.59,1]	chr20	1510047	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS21	ENSG00000171858.18	ENST00000343986.9:ENST00000492356.2:ENST00000370562.1:ENST00000450116.6:ENST00000370592.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	94	2	1.3949	1.9278499999999998	2.4608	0.0248865	0.00407427	0.113921	0.0324137
chr7	5605769	5605867	8112125	0	+	0.581633	(0.53,0.59]	chr7	620041	4	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	85	2	1.31257	1.927585	2.5426	0.0344242	1.04763e-4	0.142965	0.00187484
chr4	98880053	98880151	5547673	0	-	0.306122	(0.29,0.33]	chr4	443076	9	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7	protein_coding	protein_coding	protein_coding	protein_coding	7	19	2	1.61234	1.9273	2.24226	0.0360321	0.0306054	0.145024	0.130226
chrX	124063115	124063205	18852191	0	+	0.377778	(0.36,0.39]	chrX	1606242	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	43	2	1.73671	1.9271099999999999	2.11751	0.011685	0.00296338	0.0686664	0.0253798
chr4	176330581	176330679	5242247	0	+	0.377551	(0.36,0.39]	chr4	421869	24	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	1.6654	1.92704	2.18868	0.0161285	0.00436393	0.0866586	0.0340502
chr14	102034339	102034439	14495721	0	+	0.54	(0.53,0.59]	chr14	1133201	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000679486.1:ENST00000681010.1:ENST00000679629.1:ENST00000681123.1:ENST00000680874.1:ENST00000680137.1:ENST00000643508.2:ENST00000647366.1:ENST00000645697.1:ENST00000647307.1:ENST00000643437.1:ENST00000643722.1:ENST00000643829.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	41	2	1.78471	1.927005	2.0693	0.0160468	0.0122294	0.0860154	0.0703354
chr7	56062682	56062755	8290551	0	+	0.465753	(0.455,0.49]	chr7	631518	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000462133.5:ENST00000494736.1:ENST00000466479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	42	2	1.56242	1.926985	2.29155	0.0198935	0.00354718	0.0966287	0.0291792
chr22	20566641	20566729	18298987	0	+	0.590909	(0.59,1]	chr22	1553478	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	153	2	1.56278	1.92553	2.28828	0.017518	4.87228e-4	0.0918323	0.00638318
chr15	48879599	48879695	14921720	0	+	0.260417	[0,0.29]	chr15	1173117	10	UTR3	UTR3:EXON_MRNA	EID1	ENSG00000255302.5	ENST00000530028.3	protein_coding	protein_coding	protein_coding	protein_coding	8	20	2	1.84905	1.9245750000000001	2.0001	0.0241194	0.0227161	0.110734	0.107633
chr2	132254490	132254588	2878617	0	-	0.479592	(0.455,0.49]	chr2	257829	13	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	70	294	2	1.19787	1.924425	2.65098	0.01615	4.03999e-7	0.0860274	1.84583e-5
chr22	21445112	21445208	18302314	0	+	0.541667	(0.53,0.59]	chr22	1554127	3	CDS	CDS:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	9	40	2	1.39828	1.9243999999999999	2.45052	0.0486819	0.00355092	0.175495	0.0300049
chr13	46126312	46126410	14009603	0	-	0.397959	(0.39,0.42]	chr13	1098488	5	UTR3	UTR3:EXON_MRNA	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	13	41	2	1.33865	1.9241949999999999	2.50974	0.0417156	0.00123319	0.165497	0.0131207
chr2	107724746	107724846	2831417	0	-	0.44	(0.42,0.455]	chr2	252405	71	INTRON	INTRON	LINC01885:RP11-534J18.1	ENSG00000237880.2:ENSG00000286769.1	ENST00000654481.1:ENST00000669817.1	lncRNA	lncRNA	lncRNA	lncRNA	10	37	2	1.58962	1.924145	2.25867	0.0352	0.0025407	0.142054	0.0233955
chr3	155897983	155898041	3824249	0	+	0.413793	(0.39,0.42]	chr3	326161	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	GMPS	ENSG00000163655.16	ENST00000496455.7:ENST00000295920.7:ENST00000476145.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	1.84882	1.923965	1.99911	0.0477207	0.0214409	0.17993	0.102904
chr14	74781729	74781829	14401395	0	+	0.6	(0.59,1]	chr14	1125425	5	CDS	CDS:EXON_MRNA	YLPM1	ENSG00000119596.18	ENST00000325680.12:ENST00000552421.5:ENST00000549293.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	41	2	1.72824	1.92359	2.11894	0.0471232	0.0293157	0.179872	0.128478
chr4	83461779	83461877	5500208	0	-	0.357143	(0.33,0.36]	chr4	440770	24	UTR3	UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	45	2	1.69073	1.92314	2.15555	0.00653525	0.00575018	0.0456362	0.0426551
chr1	235110020	235110118	1560072	0	-	0.316327	(0.29,0.33]	chr1	156012	8	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	15	39	2	1.8523	1.9230749999999999	1.99385	0.00637284	0.00590939	0.0448323	0.0426963
chr15	41380666	41380762	14886254	0	+	0.34375	(0.33,0.36]	chr15	1169383	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RP11-16O9.3:NUSAP1	ENSG00000285920.2:ENSG00000137804.14	ENST00000668616.1:ENST00000649527.1:ENST00000661438.1:ENST00000668273.1:ENST00000260359.10:ENST00000558123.5:ENST00000414849.6:ENST00000559596.6:ENST00000560747.5:ENST00000560177.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	30	82	2	1.66753	1.92306	2.17859	0.00215183	0.00149866	0.0200898	0.0159742
chrX	153948451	153948550	19275563	0	-	0.262626	[0,0.29]	chrX	1637875	10	UTR3	UTR3:EXON_MRNA	HCFC1	ENSG00000172534.14	ENST00000310441.12:ENST00000444191.5:ENST00000369984.4	protein_coding	protein_coding	protein_coding	protein_coding	30	62	2	1.2755	1.922905	2.57031	0.0251047	9.27476e-5	0.116934	0.00169635
chr1	51776832	51776918	191573	0	+	0.372093	(0.36,0.39]	chr1	24538	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	29	2	1.66365	1.922765	2.18188	0.0345996	0.00600314	0.143631	0.042887
chr6	31829488	31829584	7116702	0	+	0.625	(0.59,1]	chr6	546209	16	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	13	106	2	1.35963	1.9226	2.48557	0.0471501	5.82946e-4	0.17993	0.0073854
chr1	51786525	51786617	191678	0	+	0.391304	(0.39,0.42]	chr1	24567	1	CDS	CDS:UTR3:EXON_MRNA	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	31	2	1.34729	1.92215	2.49701	0.0339607	0.0314286	0.141431	0.131462
chr16	154400	154451	15480579	0	+	0.823529	(0.59,1]	chr16	1224153	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HBZ:HBM	ENSG00000130656.6:ENSG00000206177.7	ENST00000252951.3:ENST00000472539.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	56	429	2	1.67548	1.92206	2.16864	0.00285118	1.73112e-4	0.0254415	0.00281224
chr12	56645836	56645863	13352194	0	-	0.777778	(0.59,1]	chr12	1051775	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000547808.5:ENST00000551020.5:ENST00000552959.5:ENST00000553007.2:ENST00000548647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	34	2	1.88006	1.9220000000000002	1.96394	0.0554008	0.0453144	0.191173	0.174798
chr1	207046334	207046433	1465417	0	-	0.292929	(0.29,0.33]	chr1	148274	26	UTR3	UTR3:EXON_MRNA	YOD1	ENSG00000180667.11	ENST00000367084.1:ENST00000315927.9	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.62619	1.921665	2.21714	0.0358231	0.00315975	0.147298	0.0266443
chrX	120608224	120608291	18844420	0	+	0.432836	(0.42,0.455]	chrX	1605843	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MCTS1	ENSG00000232119.8	ENST00000493274.5:ENST00000371317.10:ENST00000371315.3:ENST00000487133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	34	2	1.87159	1.92155	1.97151	0.0214479	0.0084649	0.102998	0.0546473
chr1	19339245	19339340	877773	0	-	0.589474	(0.53,0.59]	chr1	90666	6	UTR3	UTR3:EXON_MRNA	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674299.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	52	2	1.78852	1.92127	2.05402	0.0249781	0.00260318	0.116495	0.0230216
chr4	78870967	78871060	4912286	0	+	0.569892	(0.53,0.59]	chr4	404381	3	CDS	CDS:UTR3:EXON_MRNA	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	29	2	1.89806	1.9212150000000001	1.94437	0.0532477	0.0143432	0.184818	0.0783202
chr5	10437134	10437233	5875569	0	+	0.393939	(0.39,0.42]	chr5	462061	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	29	2	1.66154	1.920895	2.18025	0.0452475	0.00587938	0.174743	0.0424857
chr9	130886380	130886479	10494295	0	+	0.545455	(0.53,0.59]	chr9	792936	8	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	6	29	2	1.90953	1.92085	1.93217	0.0517711	0.0149802	0.193577	0.0814081
chr2	26214509	26214576	2565886	0	-	0.358209	(0.33,0.36]	chr2	230599	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HADHA	ENSG00000084754.12	ENST00000380649.8:ENST00000644428.1:ENST00000492433.2:ENST00000643057.1:ENST00000645274.1:ENST00000643233.1:ENST00000643063.1:ENST00000646483.1:ENST00000471743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	24	2	1.36994	1.920785	2.47163	0.0479853	0.0129725	0.17535800000000001	0.0724783
chr20	62905554	62905601	18031261	0	-	0.425532	(0.42,0.455]	chr20	1529199	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8:ENST00000370366.1	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.49942	1.920665	2.34191	0.0468435	0.0159091	0.171905	0.0854674
chr6	32115358	32115453	7664387	0	-	0.431579	(0.42,0.455]	chr6	585967	2	UTR3	UTR3:EXON_MRNA:INTRON	XXbac-BPG300A18.16:ATF6B	ENSG00000284829.1:ENSG00000213676.13	ENST00000494022.1:ENST00000375201.8:ENST00000375203.8:ENST00000453203.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	25	2	1.49942	1.920665	2.34191	0.0468435	0.0159091	0.171905	0.0854674
chrX	48578162	48578262	18692253	0	+	0.31	(0.29,0.33]	chrX	1594208	11	UTR3	UTR3:EXON_MRNA	RBM3	ENSG00000102317.18	ENST00000376759.8:ENST00000354480.2	protein_coding	protein_coding	protein_coding	protein_coding	10	26	2	1.61234	1.920365	2.22839	0.0360321	0.00486332	0.145024	0.0374757
chr11	46751345	46751439	12383557	0	-	0.43617	(0.42,0.455]	chr11	956005	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000533413.5:ENST00000525896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	55	2	1.87928	1.920075	1.96087	0.00983972	0.00288222	0.0615953	0.0247308
chr11	119094315	119094407	12626592	0	-	0.663043	(0.59,1]	chr11	979845	6	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	53	2	1.66121	1.92005	2.17889	0.0272831	0.025085	0.120977	0.116848
chr2	113958147	113958245	2007128	0	+	0.265306	[0,0.29]	chr2	190801	8	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	22	2	1.67519	1.9196399999999998	2.16409	0.0299989	0.0125675	0.130016	0.0716375
chr14	58271895	58271953	14311483	0	+	0.293103	(0.29,0.33]	chr14	1118541	1	UTR3	UTR3:EXON_MRNA	PSMA3	ENSG00000100567.13	ENST00000216455.9:ENST00000412908.6:ENST00000557508.5:ENST00000553677.1:ENST00000557290.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	30	2	1.86069	1.9195799999999998	1.97847	0.021654	0.00619596	0.103926	0.0440912
chr21	8438532	8438631	18041929	0	+	0.575758	(0.53,0.59]	chr21	1530900	55	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	10086	43884	2	1.71473	1.9193000000000002	2.12387	1.7971e-4	6.547e-6	0.00290764	2.12575e-4
chr2	231461730	231461825	3226794	0	-	0.547368	(0.53,0.59]	chr2	283880	3	CDS	CDS:EXON_MRNA	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000417652.6:ENST00000453992.6:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000356936.6:ENST00000454824.6:ENST00000436894.2:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	42	2	1.57718	1.9190749999999999	2.26097	0.0353812	0.00389622	0.146532	0.0313006
chr2	20249488	20249588	2540632	0	-	0.36	(0.33,0.36]	chr2	228490	9	UTR3	UTR3:EXON_MRNA	PUM2	ENSG00000055917.16	ENST00000338086.9:ENST00000361078.7	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.38823	1.9190450000000001	2.44986	0.0550274	0.00563343	0.190119	0.0422191
chr12	110722201	110722269	13539240	0	-	0.411765	(0.39,0.42]	chr12	1065109	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PPP1CC	ENSG00000186298.12	ENST00000335007.10:ENST00000340766.9:ENST00000550261.5:ENST00000546904.1:ENST00000551582.1:ENST00000553024.1:ENST00000546933.5:ENST00000550991.5:ENST00000551676.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	48	2	1.35444	1.9190049999999998	2.48357	0.0241426	0.00171404	0.110835	0.017714
chr7	150950167	150950251	9128656	0	-	0.678571	(0.59,1]	chr7	697468	1	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	134	2	1.81952	1.91893	2.01834	0.0162925	0.00141643	0.0867467	0.0145694
chr11	61299547	61299645	12403877	0	-	0.581633	(0.53,0.59]	chr11	960172	2	UTR3	UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	29	2	1.78041	1.9188749999999999	2.05734	0.0407112	0.0167029	0.163285	0.0883198
chr5	40835100	40835182	6552971	0	-	0.548781	(0.53,0.59]	chr5	507746	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000509877.5:ENST00000504562.1:ENST00000508493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	29	2	1.78041	1.9188749999999999	2.05734	0.0407112	0.0167029	0.163285	0.0883198
chrX	154348848	154348948	19277949	0	-	0.62	(0.59,1]	chrX	1638236	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000498411.1:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000498491.5:ENST00000462590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	68	2	1.41381	1.9188100000000001	2.42381	0.0475417	0.00452614	0.17993	0.0346018
chr16	397222	397313	15481468	0	+	0.813187	(0.59,1]	chr16	1224399	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	NME4	ENSG00000103202.13	ENST00000397722.5:ENST00000454619.5:ENST00000620944.4:ENST00000621774.4:ENST00000219479.7:ENST00000448828.5:ENST00000444498.5:ENST00000460297.1:ENST00000382940.8:ENST00000433358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	87	2	1.65693	1.918795	2.18066	0.0211812	0.00401624	0.102436	0.0324137
chr2	43905691	43905780	2623107	0	-	0.52809	(0.49,0.53]	chr2	236129	1	CDS	CDS:UTR3:EXON_MRNA	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682612.1:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683002.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000472420.6:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683528.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	36	2	1.7294	1.918785	2.10817	0.0216372	0.00798134	0.103121	0.0527008
chr19	11666741	11666837	17464495	0	-	0.489583	(0.455,0.49]	chr19	1462117	8	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P10	ENSG00000214223.4	ENST00000444945.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	7	27	2	1.90955	1.91866	1.92777	0.0286531	0.0171034	0.128685	0.0903636
chr20	34080008	34080108	17762667	0	+	0.63	(0.59,1]	chr20	1500152	2	UTR3	UTR3:EXON_MRNA:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000246194.8:ENST00000489384.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	41	2	1.87297	1.918455	1.96394	0.0453144	0.0308113	0.174798	0.130016
chr19	49490839	49490864	17370754	0	+	0.68	(0.59,1]	chr19	1443127	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000484279.5:ENST00000486930.6:ENST00000472481.5:ENST00000677048.1:ENST00000678146.1:ENST00000479992.5:ENST00000676556.1:ENST00000477613.6:ENST00000467825.2:ENST00000678187.1:ENST00000476268.6:ENST00000678713.1:ENST00000474171.1:ENST00000468655.1:ENST00000476300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	112	2	1.71552	1.9184450000000002	2.12137	0.00787098	0.00514111	0.0514481	0.0393276
chrX	154368007	154368090	19278194	0	-	0.578313	(0.53,0.59]	chrX	1638375	3	CDS	CDS:EXON_MRNA	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	33	2	1.61377	1.91792	2.22207	0.0436338	0.00910511	0.170594	0.0576716
chr12	49051654	49051750	13323535	0	-	0.666667	(0.59,1]	chr12	1045564	9	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	7	56	2	1.63662	1.9178350000000002	2.19905	0.0410169	0.0105866	0.163285	0.0644466
chr1	225786869	225786969	737896	0	+	0.56	(0.53,0.59]	chr1	74377	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	SRP9	ENSG00000143742.14	ENST00000626563.2:ENST00000619790.4:ENST00000304786.12:ENST00000650651.1:ENST00000366839.8:ENST00000651465.1:ENST00000651761.1:ENST00000651653.1:ENST00000366838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	33	2	1.85636	1.9178199999999999	1.97928	0.0218546	0.0197135	0.104785	0.0983378
chr5	10410207	10410276	5875286	0	+	0.637681	(0.59,1]	chr5	462001	2	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1:ENST00000512449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	49	2	1.87297	1.91781	1.96265	0.0308113	0.0238491	0.130016	0.112466
chr7	139407173	139407261	8566150	0	+	0.443182	(0.42,0.455]	chr7	653658	1	CDS	CDS:UTR3:EXON_MRNA	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000463912.5:ENST00000498518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	30	2	1.87159	1.91778	1.96397	0.0214479	0.0138503	0.102998	0.0759947
chr12	13683541	13683627	12744077	0	+	0.581395	(0.53,0.59]	chr12	990675	1	EXON_SMALL	EXON_SMALL	RN7SKP162	ENSG00000200475.1	ENST00000363605.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	44	178	2	1.49332	1.9174349999999998	2.34155	0.00379147	9.20932e-5	0.0307587	0.00184427
chr2	110637788	110637875	2837906	0	-	0.229885	[0,0.29]	chr2	253270	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	26	2	1.52343	1.91738	2.31133	0.0301267	0.00696038	0.130016	0.0474632
chr16	18801466	18801553	15877172	0	-	0.632184	(0.59,1]	chr16	1269330	1	UTR5	UTR5:EXON_MRNA	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12:ENST00000563861.5:ENST00000562819.5:ENST00000562234.2:ENST00000569976.5:ENST00000567969.1:ENST00000566391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	93	2	1.65381	1.917235	2.18066	0.0170739	0.00401624	0.0902515	0.0324137
chr8	140525649	140525749	10132099	0	-	0.51	(0.49,0.53]	chr8	760954	56	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.78308	1.917135	2.05119	0.0425234	0.0360743	0.167547	0.145024
chr20	59034810	59034908	18026311	0	-	0.306122	(0.29,0.33]	chr20	1527983	18	UTR3	UTR3:EXON_MRNA	PRELID3B	ENSG00000101166.16	ENST00000355937.9:ENST00000371033.9	protein_coding	protein_coding	protein_coding	protein_coding	13	34	2	1.69287	1.91686	2.14085	0.0117968	0.00974544	0.0686664	0.0611259
chr1	26731241	26731332	110495	0	+	0.615385	(0.59,1]	chr1	13259	2	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000524572.1:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	13	100	2	1.35048	1.91588	2.48128	0.0420215	9.61327e-4	0.16666	0.0107621
chr4	176328917	176329015	5242230	0	+	0.265306	[0,0.29]	chr4	421869	7	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	15	37	2	1.67789	1.915755	2.15362	0.0213728	0.00184279	0.102744	0.0177995
chr7	22510416	22510515	8720299	0	-	0.373737	(0.36,0.39]	chr7	665765	101	INTRON	INTRON	STEAP1B	ENSG00000105889.16	ENST00000439708.1	protein_coding	protein_coding	protein_coding	protein_coding	145	435	2	1.80953	1.915545	2.02156	1.73225e-4	3.02234e-5	0.00304537	6.78876e-4
chr1	67687774	67687867	265226	0	+	0.365591	(0.36,0.39]	chr1	29648	1	UTR3	UTR3:EXON_MRNA	GADD45A	ENSG00000116717.13	ENST00000370986.9:ENST00000370985.4:ENST00000650283.1:ENST00000648742.1:ENST00000617962.2	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.81435	1.91546	2.01657	0.0302191	0.0118295	0.129773	0.0692539
chr1	161519334	161519433	500543	0	+	0.343434	(0.33,0.36]	chr1	54251	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000271450.12:ENST00000467525.5:ENST00000537821.2:ENST00000459885.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	9	26	2	1.66025	1.915415	2.17058	0.0220685	0.01664	0.104519	0.0878065
chr6	43785997	43786095	7159941	0	+	0.44898	(0.42,0.455]	chr6	553452	15	UTR3	UTR3:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000372077.8:ENST00000480614.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	74	2	1.33241	1.9153799999999999	2.49835	0.0352756	9.13417e-5	0.146126	0.0016849
chr3	196356485	196356584	4665030	0	-	0.414141	(0.39,0.42]	chr3	385869	90	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	46	2	1.65176	1.915235	2.17871	0.0131984	0.00255025	0.0740172	0.0234165
chr6	34590365	34590464	7674104	0	-	0.484848	(0.455,0.49]	chr6	588118	32	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.86152	1.915135	1.96875	0.0480352	0.0133542	0.180552	0.0743429
chr22	20122263	20122363	18297478	0	+	0.55	(0.53,0.59]	chr22	1553203	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000432879.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000416427.5:ENST00000421656.5:ENST00000423859.5:ENST00000418705.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	79	2	1.83526	1.91496	1.99466	0.0049448	0.00248082	0.0367601	0.0231659
chrX	24077652	24077749	18616689	0	+	0.463918	(0.455,0.49]	chrX	1589843	10	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	31	105	2	1.52506	1.9141599999999999	2.30326	0.00539451	1.85932e-4	0.0396112	0.00323042
chr11	34453800	34453863	11906157	0	+	0.460317	(0.455,0.49]	chr11	909793	1	CDS	CDS:UTR3:EXON_MRNA	CAT	ENSG00000121691.7	ENST00000241052.5:ENST00000650153.1:ENST00000528104.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	37	2	1.82729	1.914045	2.0008	0.0129467	0.0107306	0.0724783	0.0652734
chr8	53966842	53966939	9832417	0	-	0.453608	(0.42,0.455]	chr8	743907	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	54	2	1.50362	1.9140199999999998	2.32442	0.0145189	0.00182252	0.0790883	0.0183913
chr11	59637601	59637699	12401031	0	-	0.428571	(0.42,0.455]	chr11	959467	10	UTR3	UTR3:EXON_MRNA	PATL1	ENSG00000166889.14	ENST00000300146.10	protein_coding	protein_coding	protein_coding	protein_coding	11	42	2	1.44978	1.9139650000000001	2.37815	0.0463803	0.00123168	0.177188	0.0131094
chr20	2461793	2461860	17878928	0	-	0.447761	(0.42,0.455]	chr20	1512814	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SNRPB	ENSG00000125835.19	ENST00000438552.6:ENST00000381342.7:ENST00000474384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	46	2	1.54634	1.913955	2.28157	0.0338074	0.0012159	0.141431	0.0130129
chr7	5605966	5606064	8112127	0	+	0.612245	(0.59,1]	chr7	620041	6	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	71	2	1.78172	1.913885	2.04605	0.0185954	0.0103872	0.0933517	0.0640167
chr11	46809741	46809807	12384191	0	-	0.454545	(0.42,0.455]	chr11	956196	1	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	1.83064	1.913825	1.99701	0.0235036	0.0149305	0.111072	0.081162
chr12	46239800	46239895	13313968	0	-	0.357895	(0.33,0.36]	chr12	1043549	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1:ENST00000550173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	21	2	1.65713	1.91354	2.16995	0.0528205	0.0124739	0.195536	0.0713206
chr6	37174950	37175046	7136303	0	+	0.34375	(0.33,0.36]	chr6	549953	10	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	220	642	2	1.66051	1.913505	2.1665	4.12458e-4	5.12393e-6	0.00604953	1.58395e-4
chr17	82080442	82080516	16710681	0	-	0.675676	(0.59,1]	chr17	1378140	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1:ENST00000578424.2:ENST00000580382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	68	2	1.53353	1.91336	2.29319	0.0327965	0.00750123	0.137886	0.0495953
chr2	233288675	233288763	2436459	0	+	0.545455	(0.53,0.59]	chr2	219904	1	EXON_SMALL	EXON_SMALL:INTRON	ATG16L1:SCARNA6	ENSG00000085978.22:ENSG00000251791.1	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5:ENST00000464645.5:ENST00000515982.1	scaRNA	scaRNA	scaRNA:protein_coding	scaRNA:protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	37	2	1.85914	1.913235	1.96733	0.022694	0.0128779	0.105117	0.0721992
chr15	90881878	90881977	15103381	0	+	0.50505	(0.49,0.53]	chr15	1188584	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	69	2	1.7452	1.9132200000000001	2.08124	0.00573905	0.00165066	0.0426551	0.0163614
chr6	158766619	158766717	8043900	0	-	0.479592	(0.455,0.49]	chr6	614903	10	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	7	22	2	1.47423	1.913185	2.35214	0.0455621	0.0418992	0.168044	0.166188
chr5	138467321	138467415	6244787	0	+	0.585106	(0.53,0.59]	chr5	486656	7	CDS	CDS:EXON_MRNA	EGR1	ENSG00000120738.8	ENST00000239938.5	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	1.79717	1.913035	2.0289	0.0373899	0.0116438	0.146698	0.0686664
chr1	150625637	150625737	1289235	0	-	0.58	(0.53,0.59]	chr1	128273	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8:ENST00000369014.10:ENST00000361532.9:ENST00000361631.9:ENST00000509582.5:ENST00000339643.9:ENST00000638926.1:ENST00000271690.12:ENST00000356527.9:ENST00000513281.5:ENST00000505321.1:ENST00000503345.1:ENST00000354702.3:ENST00000503241.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	37	2	1.84678	1.91303	1.97928	0.0218546	0.0134899	0.104785	0.0745701
chr11	93721708	93721796	12076161	0	+	0.397727	(0.39,0.42]	chr11	930600	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP295:SCARNA9	ENSG00000166004.15:ENSG00000254911.3	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1:ENST00000530422.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	154	482	2	1.67201	1.9125200000000002	2.1530300000000002	4.46594e-4	8.60151e-6	0.0060123	2.66285e-4
chr7	30609584	30609657	8203647	0	+	0.356164	(0.33,0.36]	chr7	625800	1	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	27	2	1.81673	1.9121899999999998	2.00765	0.0287001	0.0119793	0.128757	0.0700473
chr18	59330200	59330299	17142335	0	-	0.323232	(0.29,0.33]	chr18	1407602	25	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	28	69	2	1.6804	1.9121799999999998	2.14396	0.00400526	5.73731e-4	0.0320239	0.00781817
chr19	35169615	35169703	17303898	0	+	0.647727	(0.59,1]	chr19	1430638	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FXYD5	ENSG00000089327.15	ENST00000392219.7:ENST00000592290.5:ENST00000590686.5:ENST00000541435.6:ENST00000496493.5:ENST00000342879.7:ENST00000588699.5:ENST00000423817.7:ENST00000591716.6:ENST00000586925.1:ENST00000392217.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	58	2	1.58029	1.9121299999999999	2.24397	0.0275445	0.0206682	0.122112	0.0997234
chr11	9606328	9606421	11793849	0	+	0.451613	(0.42,0.455]	chr11	903124	3	EXON_PSEUDO	EXON_PSEUDO	RPL23AP65	ENSG00000243964.1	ENST00000475608.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	62	2	1.41199	1.912115	2.41224	0.0212785	3.95119e-4	0.102887	0.00587341
chrX	71574693	71574793	18733160	0	+	0.31	(0.29,0.33]	chrX	1598848	10	UTR3	UTR3:EXON_MRNA	OGT	ENSG00000147162.14	ENST00000373719.8	protein_coding	protein_coding	protein_coding	protein_coding	14	35	2	1.74949	1.9121100000000002	2.07473	0.0162875	0.00312814	0.0866586	0.0275934
chr16	89560773	89560866	15810077	0	+	0.72043	(0.59,1]	chr16	1258667	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	56	2	1.90752	1.91148	1.91544	0.0282297	0.0165875	0.127287	0.0878414
chrM	8472	8526	19377223	0	+	0.333333	(0.33,0.36]	chrM	1649813	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MT-ATP8	ENSG00000228253.1	ENST00000361851.1	protein_coding	protein_coding	protein_coding	protein_coding	93	243	2	1.81526	1.91139	2.00752	3.22199e-4	5.39934e-5	0.0046122	0.00120271
chr11	62854853	62854932	12411589	0	-	0.405063	(0.39,0.42]	chr11	961823	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000539303.5:ENST00000545308.5:ENST00000540904.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	20	74	2	1.57821	1.9111799999999999	2.24415	0.020538	2.1006e-4	0.0992467	0.00327655
chr1	109592840	109592939	399344	0	+	0.262626	[0,0.29]	chr1	38901	6	UTR3	UTR3:EXON_MRNA	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	21	49	2	1.7276	1.9106649999999998	2.09373	0.00490378	0.00255158	0.0366648	0.0234266
chr12	56613014	56613087	13351852	0	-	0.520548	(0.49,0.53]	chr12	1051689	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5:ENST00000551996.1:ENST00000547647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	42	2	1.46766	1.910195	2.35273	0.0523669	0.00139962	0.194793	0.0144327
chr15	90881482	90881580	15103377	0	+	0.693878	(0.59,1]	chr15	1188582	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FURIN	ENSG00000140564.13	ENST00000268171.8:ENST00000610579.4:ENST00000680053.1:ENST00000618099.4:ENST00000680687.1:ENST00000681804.1:ENST00000681865.1:ENST00000680086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	74	2	1.58352	1.90998	2.23644	0.0477456	0.00299714	0.179958	0.0256292
chr17	76143057	76143156	16687599	0	-	0.464646	(0.455,0.49]	chr17	1374345	7	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RNF157	ENSG00000141576.16	ENST00000647930.1:ENST00000269391.11:ENST00000589912.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	28	2	1.5448	1.90986	2.27492	0.0314044	0.0193827	0.131369	0.0943643
chr7	135928638	135928737	9085567	0	-	0.323232	(0.29,0.33]	chr7	693646	20	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	24	58	2	1.53178	1.9092149999999999	2.28665	0.00642898	0.0022585	0.0450905	0.0214524
chr8	11826158	11826215	9201939	0	+	0.508772	(0.49,0.53]	chr8	703045	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000532266.5:ENST00000528643.5:ENST00000525777.5:ENST00000528729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	63	2	1.57891	1.90878	2.23865	0.0281303	4.8873e-4	0.126918	0.00638802
chr18	36164474	36164570	16825248	0	+	0.427083	(0.42,0.455]	chr18	1387646	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ELP2	ENSG00000134759.14	ENST00000351393.10:ENST00000442325.6:ENST00000358232.11:ENST00000423854.6:ENST00000539560.5:ENST00000350494.10:ENST00000542824.5:ENST00000540799.1:ENST00000542050.5:ENST00000543861.5:ENST00000540766.5:ENST00000541294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	23	2	1.86513	1.90859	1.95205	0.0357107	0.0248244	0.147298	0.113644
chr4	150867670	150867766	5731531	0	-	0.4375	(0.42,0.455]	chr4	452907	1	CDS	CDS:EXON_MRNA	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	23	2	1.86513	1.90859	1.95205	0.0357107	0.0248244	0.147298	0.113644
chr5	134201934	134202021	6844160	0	-	0.425287	(0.42,0.455]	chr5	523690	2	CDS	CDS:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6:ENST00000495833.1:ENST00000522385.1:ENST00000523082.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	23	2	1.86513	1.90859	1.95205	0.0357107	0.0248244	0.147298	0.113644
chr1	202941108	202941201	1453181	0	-	0.397849	(0.39,0.42]	chr1	146051	4	UTR3	UTR3:EXON_MRNA	ADIPOR1	ENSG00000159346.13	ENST00000495562.5:ENST00000340990.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	68	2	1.15367	1.90858	2.66349	0.0306301	2.98559e-4	0.130016	0.00471823
chr10	123160485	123160565	11299022	0	+	0.55	(0.53,0.59]	chr10	861572	2	CDS	CDS:EXON_MRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9:ENST00000407911.2	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.77634	1.9083700000000001	2.0404	0.0362529	0.025972	0.148525	0.117079
chr9	33922232	33922322	10633424	0	-	0.577778	(0.53,0.59]	chr9	803789	7	UTR3	UTR3:EXON_MRNA	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682949.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000379235.5:ENST00000682538.1:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	28	2	1.77634	1.9083700000000001	2.0404	0.0362529	0.025972	0.148525	0.117079
chr10	27539166	27539264	10988554	0	+	0.285714	[0,0.29]	chr10	835725	12	UTR3	UTR3:EXON_MRNA:INTRON	RAB18	ENSG00000099246.18	ENST00000682082.1:ENST00000611151.5:ENST00000621805.5:ENST00000535776.6:ENST00000682518.1:ENST00000356940.11:ENST00000682852.1:ENST00000683419.1:ENST00000683816.1:ENST00000682389.1:ENST00000684393.1:ENST00000683755.1:ENST00000682181.1:ENST00000682963.1:ENST00000682668.1:ENST00000682173.1:ENST00000684134.1:ENST00000682777.1:ENST00000684191.1:ENST00000682347.1:ENST00000683030.1:ENST00000683915.1:ENST00000684457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	22	2	1.73193	1.9081350000000001	2.08434	0.0218934	0.0181581	0.104942	0.0945306
chr2	9584154	9584248	2508155	0	-	0.308511	(0.29,0.33]	chr2	226349	3	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	8	21	2	1.57378	1.90802	2.24226	0.0310929	0.0306054	0.130369	0.130226
chr4	120059617	120059717	5621459	0	-	0.29	[0,0.29]	chr4	448079	41	UTR3	UTR3:EXON_MRNA	MAD2L1	ENSG00000164109.14	ENST00000296509.11:ENST00000333047.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	42	2	1.78518	1.90772	2.03026	0.00914185	0.00250982	0.0579527	0.0226168
chr6	20493315	20493415	7075600	0	+	0.43	(0.42,0.455]	chr6	541472	30	UTR3	UTR3:EXON_MRNA	E2F3	ENSG00000112242.15	ENST00000346618.8:ENST00000613242.4:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.7601	1.907625	2.05515	0.0312663	0.017518	0.132093	0.0924156
chr7	44832171	44832268	8800343	0	-	0.319588	(0.29,0.33]	chr7	671367	3	UTR3	UTR3:EXON_MRNA:INTRON	H2AZ2	ENSG00000105968.19	ENST00000222690.10:ENST00000437072.5:ENST00000308153.9	protein_coding	protein_coding	protein_coding	protein_coding	18	45	2	1.56493	1.90758	2.25023	0.0173025	0.00104393	0.0909054	0.0115949
chrX	47198802	47198902	18686727	0	+	0.62	(0.59,1]	chrX	1593176	1	CDS_START	CDS_START:CDS:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000412206.5:ENST00000427561.5:ENST00000335972.11:ENST00000442035.5:ENST00000457753.5:ENST00000451702.2	protein_coding	protein_coding	protein_coding	protein_coding	5	41	2	1.8502	1.9071799999999999	1.96416	0.044741	0.0334531	0.166115	0.140296
chr22	40856540	40856639	18518209	0	-	0.747475	(0.59,1]	chr22	1581015	1	UTR5	UTR5:EXON_MRNA	ST13	ENSG00000100380.14	ENST00000216218.8:ENST00000620312.4:ENST00000455824.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	100	2	1.55288	1.90717	2.26146	0.0153062	0.00467034	0.0830827	0.0361714
chr21	44771076	44771176	18276944	0	-	0.48	(0.455,0.49]	chr21	1550170	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBE2G2	ENSG00000184787.19	ENST00000345496.7:ENST00000481546.1:ENST00000497630.5:ENST00000477954.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	30	2	1.90433	1.90694	1.90955	0.0185466	0.0171034	0.0932453	0.0903636
chr19	3977818	3977906	17430189	0	-	0.590909	(0.59,1]	chr19	1454695	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	32	212	2	1.0825	1.90653	2.73056	0.0409185	7.89855e-5	0.154814	0.00164749
chr9	121190642	121190731	10835985	0	-	0.359551	(0.33,0.36]	chr9	820943	2	CDS	CDS:EXON_MRNA	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.68466	1.9065050000000001	2.12835	0.0351252	0.00459785	0.145575	0.0351308
chrM	15224	15319	19377288	0	+	0.452632	(0.42,0.455]	chrM	1649831	5	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	57	186	2	1.71435	1.90645	2.09855	0.00072588800000000005	1.58762e-4	0.0091243	0.00262944
chr13	49095441	49095492	13729800	0	+	0.45098	(0.42,0.455]	chr13	1081576	2	EXON_SMALL	EXON_SMALL:INTRON	FNDC3A:RNY3P2	ENSG00000102531.16:ENSG00000199788.1	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5:ENST00000362918.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:nonsense_mediated_decay	52	178	2	1.80864	1.906035	2.00343	6.0486e-4	2.05151e-4	0.00756172	0.00347954
chr7	135606750	135606832	8552901	0	+	0.353659	(0.33,0.36]	chr7	652793	1	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000472132.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	34	2	1.6133	1.90525	2.1972	0.0264235	0.00332656	0.120071	0.0277823
chr7	30615919	30615988	8203717	0	+	0.463768	(0.455,0.49]	chr7	625825	1	CDS	CDS:UTR3:EXON_MRNA	GARS1	ENSG00000106105.15	ENST00000675051.1:ENST00000470392.2:ENST00000674643.1:ENST00000675529.1:ENST00000674807.1:ENST00000675810.1:ENST00000676088.1:ENST00000674815.1:ENST00000676403.1:ENST00000485784.2:ENST00000676210.1:ENST00000478124.6:ENST00000389266.8:ENST00000675693.1:ENST00000676259.1:ENST00000675651.1:ENST00000674616.1:ENST00000674737.1:ENST00000675859.1:ENST00000676140.1:ENST00000674969.1:ENST00000676164.1:ENST00000675886.1:ENST00000444666.6:ENST00000675587.1:ENST00000674851.1:ENST00000675863.1:ENST00000674734.1:ENST00000484093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	42	2	1.53544	1.9051799999999999	2.27492	0.0193827	0.0127148	0.0943643	0.0725185
chr5	882855	882955	6421822	0	-	0.53	(0.49,0.53]	chr5	500315	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	21	2	1.9035	1.9051749999999998	1.90685	0.0534351	0.0295204	0.184995	0.129773
chr6	34281074	34281173	7672412	0	-	0.40404	(0.39,0.42]	chr6	588026	15	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	9	31	2	1.63008	1.905165	2.18025	0.0358647	0.00587938	0.147298	0.0424857
chr1	186331497	186331581	1411903	0	-	0.416667	(0.39,0.42]	chr1	142828	1	CDS	CDS:EXON_MRNA	TPR	ENSG00000047410.14	ENST00000367478.9	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.87119	1.905135	1.93908	0.0373134	0.0154765	0.152293	0.0836906
chr1	37703251	37703347	142690	0	+	0.572917	(0.53,0.59]	chr1	17826	1	CDS	CDS:EXON_MRNA	CDCA8	ENSG00000134690.11	ENST00000327331.2:ENST00000373055.6	protein_coding	protein_coding	protein_coding	protein_coding	8	34	2	1.5389	1.905015	2.27113	0.0306924	0.0178853	0.130016	0.0918323
chr21	8445757	8445857	18042002	0	+	0.52	(0.49,0.53]	chr21	1530902	59	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	4630	17118	2	1.6479	1.90499	2.16208	2.47764e-4	2.96439e-6	0.00374265	1.10627e-4
chr19	46610015	46610111	17357591	0	+	0.416667	(0.39,0.42]	chr19	1440686	10	UTR3	UTR3:EXON_MRNA	CALM3	ENSG00000160014.17	ENST00000291295.14:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	25	84	2	1.84998	1.904685	1.95939	0.00395575	7.52098e-4	0.0322851	0.00899532
chr19	11133244	11133340	17230324	0	+	0.541667	(0.53,0.59]	chr19	1419642	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	LDLR	ENSG00000130164.14	ENST00000558518.6:ENST00000252444.9:ENST00000560628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	24	2	1.78041	1.904655	2.0289	0.0407112	0.0373899	0.163285	0.146698
chr17	75777903	75778001	16684884	0	-	0.357143	(0.33,0.36]	chr17	1373459	16	UTR3	UTR3:EXON_MRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8	protein_coding	protein_coding	protein_coding	protein_coding	24	64	2	1.55132	1.904615	2.25791	0.00755044	6.69776e-4	0.0498715	0.0087033
chr3	10305558	10305625	4032337	0	-	0.477612	(0.455,0.49]	chr3	338589	1	CDS	CDS:EXON_MRNA	SEC13	ENSG00000157020.18	ENST00000350697.8:ENST00000337354.8:ENST00000397109.7:ENST00000479868.6:ENST00000397117.5:ENST00000383801.6:ENST00000477547.6:ENST00000476597.1:ENST00000490283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	38	2	1.80094	1.9044249999999998	2.00791	0.0265942	0.00484225	0.120205	0.0366328
chr1	202767323	202767418	1452138	0	-	0.557895	(0.53,0.59]	chr1	145889	2	EXON_PSEUDO	EXON_PSEUDO:SS3_PROX:INTRON	KDM5B:RP11-480I12.2	ENSG00000117139.18:ENSG00000235449.2	ENST00000367265.9:ENST00000648338.1:ENST00000649542.1:ENST00000647757.1:ENST00000367264.7:ENST00000648473.1:ENST00000650569.1:ENST00000648056.1:ENST00000649770.1:ENST00000648469.1:ENST00000650417.1:ENST00000235790.9:ENST00000650422.1:ENST00000648738.1:ENST00000648958.1:ENST00000602511.1:ENST00000430450.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	10	39	2	1.33826	1.90413	2.47	0.0412763	0.0089333	0.156056	0.0567495
chr4	87046833	87046928	4940212	0	+	0.515789	(0.49,0.53]	chr4	405698	1	CDS	CDS:EXON_MRNA:INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	1.75643	1.90381	2.05119	0.0360743	0.0293825	0.145024	0.129773
chr17	28636964	28637032	16486652	0	-	0.573529	(0.53,0.59]	chr17	1348034	1	CDS	CDS:EXON_MRNA	KIAA0100	ENSG00000007202.15	ENST00000528896.7:ENST00000544884.5:ENST00000389003.7	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.89806	1.9037950000000001	1.90953	0.0532477	0.0517711	0.193577	0.184818
chr17	38297183	38297249	16215579	0	+	0.545455	(0.53,0.59]	chr17	1310354	1	CDS_START	CDS_START:CDS:EXON_MRNA	MRPL45	ENSG00000278845.5	ENST00000619548.1:ENST00000613675.5	protein_coding	protein_coding	protein_coding	protein_coding	4	20	2	1.89806	1.9037950000000001	1.90953	0.0532477	0.0517711	0.193577	0.184818
chr3	49103885	49103972	4172517	0	-	0.586207	(0.53,0.59]	chr3	350411	1	CDS_STOP	CDS_STOP:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	QARS1	ENSG00000172053.18	ENST00000306125.12:ENST00000430182.5:ENST00000636669.1:ENST00000414533.5:ENST00000464962.6:ENST00000636018.1:ENST00000635443.1:ENST00000494767.2:ENST00000635541.1:ENST00000470619.6:ENST00000635501.1:ENST00000452739.5:ENST00000482261.7:ENST00000635375.1:ENST00000634527.1:ENST00000634802.1:ENST00000634602.1:ENST00000635622.1:ENST00000635292.1:ENST00000635231.1:ENST00000635052.1:ENST00000635194.1:ENST00000479495.5:ENST00000418549.3:ENST00000417025.2:ENST00000634609.1:ENST00000635494.1:ENST00000634425.1:ENST00000634953.1:ENST00000634724.1:ENST00000635278.1:ENST00000634359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	20	2	1.89806	1.9037950000000001	1.90953	0.0532477	0.0517711	0.193577	0.184818
chr6	33300578	33300676	7669208	0	-	0.581633	(0.53,0.59]	chr6	587559	10	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	10	46	2	1.71269	1.9037950000000001	2.0949	0.0222391	0.00477326	0.104593	0.0368489
chr6	31736300	31736390	7662171	0	-	0.7	(0.59,1]	chr6	585147	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	26	194	2	1.75963	1.9036	2.04757	0.00332047	0.00207812	0.0285838	0.0195302
chr14	74903083	74903177	14402441	0	+	0.510638	(0.49,0.53]	chr14	1125613	9	UTR3	UTR3:EXON_MRNA	DLST	ENSG00000119689.15	ENST00000334220.9	protein_coding	protein_coding	protein_coding	protein_coding	5	21	2	1.81659	1.903515	1.99044	0.0435903	0.0376859	0.170594	0.147713
chr5	146511113	146511207	6281604	0	+	0.287234	[0,0.29]	chr5	489665	6	UTR3	UTR3:EXON_MRNA	TCERG1	ENSG00000113649.13	ENST00000296702.9:ENST00000679501.2:ENST00000506524.5:ENST00000511077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	17	2	1.80685	1.9034750000000003	2.0001	0.0438772	0.0227161	0.163572	0.107633
chr21	29344490	29344588	18090061	0	+	0.306122	(0.29,0.33]	chr21	1533713	18	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	8	22	2	1.81246	1.903305	1.99415	0.0333928	0.0178891	0.140128	0.0937046
chrX	37730147	37730246	18656831	0	+	0.313131	(0.29,0.33]	chrX	1591369	18	UTR3	UTR3:EXON_MRNA:INTRON	RP5-972B16.2:XK	ENSG00000250349.3:ENSG00000047597.7	ENST00000465127.1:ENST00000378616.5	protein_coding	protein_coding	protein_coding	protein_coding	11	28	2	1.81246	1.903175	1.99389	0.0178891	0.00896841	0.0937046	0.0569518
chr12	8460968	8461056	12721978	0	+	0.363636	(0.36,0.39]	chr12	988403	5	EXON_PSEUDO	EXON_PSEUDO:INTRON	CLEC6A:RP11-113C12.2	ENSG00000205846.4:ENSG00000243830.2	ENST00000382073.4:ENST00000477936.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	8	25	2	1.63825	1.90271	2.16717	0.0311278	0.0152504	0.130473	0.0828908
chr6	67888548	67888647	7784146	0	-	0.484848	(0.455,0.49]	chr6	596229	17	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	126	446	2	1.72339	1.90252	2.08165	3.92706e-4	2.28305e-5	0.00583979	5.42401e-4
chr3	185417790	185417889	4625647	0	-	0.434343	(0.42,0.455]	chr3	382004	4	EXON_PSEUDO	EXON_PSEUDO	RPL4P4	ENSG00000229638.1	ENST00000422486.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	33	120	2	1.51364	1.902515	2.29139	0.00762741	6.90135e-5	0.0507586	0.00133564
chr19	34365195	34365259	17300189	0	+	0.65625	(0.59,1]	chr19	1429814	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000587521.7:ENST00000587384.6:ENST00000592277.5:ENST00000642240.1:ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000646312.1:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	135	2	1.74821	1.90218	2.05615	0.00592572	0.00346808	0.0428081	0.0294024
chr17	51166410	51166493	16266598	0	+	0.771084	(0.59,1]	chr17	1319604	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5:ENST00000512737.6:ENST00000503064.5:ENST00000393183.7:ENST00000485076.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	215	2	1.50822	1.902065	2.29591	0.0118549	2.70666e-4	0.0686664	0.00403739
chr13	27623074	27623150	13658108	0	+	0.460526	(0.455,0.49]	chr13	1076514	2	CDS	CDS:EXON_MRNA:INTRON	POLR1D	ENSG00000186184.19	ENST00000627604.1:ENST00000637180.1:ENST00000621089.2:ENST00000637389.1:ENST00000399697.7:ENST00000489647.4:ENST00000636817.1:ENST00000630983.1:ENST00000465887.2:ENST00000302979.5:ENST00000637071.1:ENST00000399696.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	35	2	1.79605	1.90198	2.00791	0.0427708	0.00484225	0.168094	0.0366328
chr2	69940168	69940267	1878447	0	+	0.353535	(0.33,0.36]	chr2	177393	20	UTR3	UTR3:EXON_MRNA:INTRON	MXD1	ENSG00000059728.11	ENST00000540449.5:ENST00000264444.7:ENST00000465446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	25	2	1.82394	1.901935	1.97993	0.0494504	0.00884101	0.18557	0.0563713
chr2	206160566	206160638	2337581	0	+	0.513889	(0.49,0.53]	chr2	211064	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EEF1B2	ENSG00000114942.14	ENST00000236957.9:ENST00000392221.5:ENST00000445505.5:ENST00000479587.1:ENST00000429769.5:ENST00000460760.1:ENST00000392222.7:ENST00000415904.1:ENST00000455150.1:ENST00000435123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	47	2	1.70501	1.901345	2.09768	0.017267	0.00318615	0.091184	0.0279693
chr8	100919500	100919599	9976211	0	-	0.353535	(0.33,0.36]	chr8	752728	31	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	70	188	2	1.54223	1.901055	2.25988	0.00230881	1.87543e-5	0.0219135	4.60518e-4
chr2	157300918	157300999	2152540	0	+	0.444444	(0.42,0.455]	chr2	198607	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5:ENST00000463418.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	1.87159	1.90096	1.93033	0.0505055	0.0214479	0.181202	0.102998
chr8	47897227	47897294	9816773	0	-	0.447761	(0.42,0.455]	chr8	742773	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.84101	1.9009399999999999	1.96087	0.0352234	0.00983972	0.142054	0.0615953
chr1	67412806	67412906	1079134	0	-	0.32	(0.29,0.33]	chr1	110137	51	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11:ENST00000370995.6:ENST00000370990.5	protein_coding	protein_coding	protein_coding	protein_coding	22	54	2	1.86603	1.900835	1.93564	0.00340358	0.00244508	0.0283456	0.0229544
chr11	9429673	9429753	11792722	0	+	0.35	(0.33,0.36]	chr11	902886	1	CDS	CDS:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	1.72403	1.900695	2.07736	0.0442037	0.0238301	0.172163	0.109562
chr1	219980084	219980162	1510782	0	-	0.371795	(0.36,0.39]	chr1	150986	1	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	20	66	2	1.74874	1.90068	2.05262	0.0142811	5.92704e-4	0.0780385	0.00744657
chr4	39780117	39780216	4802028	0	+	0.272727	[0,0.29]	chr4	396197	18	UTR3	UTR3:EXON_MRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10	protein_coding	protein_coding	protein_coding	protein_coding	10	24	2	1.63724	1.900665	2.16409	0.0255145	0.0125675	0.115596	0.0716375
chr22	21762645	21762745	18442377	0	-	0.31	(0.29,0.33]	chr22	1572508	31	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	27	67	2	1.67812	1.900585	2.12305	0.00323319	0.00134195	0.0270875	0.0145367
chr12	53413892	53413990	12886207	0	+	0.397959	(0.39,0.42]	chr12	1002329	28	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	14	48	2	1.41237	1.900305	2.38824	0.0377681	6.81913e-4	0.154092	0.00834704
chr1	58659004	58659103	1055180	0	-	0.343434	(0.33,0.36]	chr1	108146	44	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	23	2	1.57909	1.900055	2.22102	0.0532274	0.00736622	0.184818	0.0490627
chr3	101682770	101682838	4331672	0	-	0.426471	(0.42,0.455]	chr3	361340	1	CDS	CDS:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000488288.1:ENST00000469605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	43	154	2	1.88673	1.900055	1.91338	0.00168044	2.65757e-4	0.0175001	0.00396755
chr19	15835661	15835756	17246593	0	+	0.410526	(0.39,0.42]	chr19	1422765	10	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UCA1	ENSG00000214049.8	ENST00000645805.1:ENST00000644567.2:ENST00000644174.2:ENST00000645764.1:ENST00000655708.1:ENST00000642256.2:ENST00000671188.1:ENST00000644796.2:ENST00000655191.1:ENST00000397381.6:ENST00000642440.2:ENST00000666830.1:ENST00000644400.1:ENST00000647292.1:ENST00000665604.1:ENST00000645177.1	lncRNA	lncRNA	lncRNA	lncRNA	9	30	2	1.65092	1.89996	2.149	0.0216584	0.0149155	0.103121	0.0812412
chr6	24781476	24781548	7095296	0	+	0.5	(0.49,0.53]	chr6	542217	1	CDS	CDS:EXON_MRNA	GMNN	ENSG00000112312.10	ENST00000356509.7:ENST00000230056.8:ENST00000620958.4:ENST00000378054.6:ENST00000476555.5:ENST00000378059.3	protein_coding	protein_coding	protein_coding	protein_coding	9	36	2	1.56396	1.89993	2.2359	0.0388812	0.00449268	0.158355	0.0343656
chr8	56074383	56074446	9834826	0	-	0.650794	(0.59,1]	chr8	744209	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	RPS20	ENSG00000008988.11	ENST00000676461.1:ENST00000519807.5:ENST00000678039.1:ENST00000676918.1:ENST00000678683.1:ENST00000524349.5:ENST00000520627.1:ENST00000521262.5:ENST00000009589.8:ENST00000520490.1:ENST00000519606.5:ENST00000521289.5:ENST00000518875.5:ENST00000519369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	27	208	2	1.70521	1.8997950000000001	2.09438	0.00671049	6.44455e-4	0.0461066	0.00799743
chrX	153693523	153693586	18915618	0	+	0.603175	(0.59,1]	chrX	1611186	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000467402.1:ENST00000485324.1:ENST00000413787.1:ENST00000442457.1:ENST00000457723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	126	2	1.72849	1.89966	2.07083	0.00646562	0.00439979	0.0451771	0.034236
chr9	130771154	130771254	10493134	0	+	0.41	(0.39,0.42]	chr9	792876	563	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	11	33	2	1.49767	1.8991099999999999	2.30055	0.0278687	0.0070645	0.125776	0.0477419
chr16	70269690	70269763	15997064	0	-	0.60274	(0.59,1]	chr16	1284660	2	CDS	CDS:UTR3:EXON_MRNA	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	67	2	1.45712	1.8990999999999998	2.34108	0.0409956	0.00648714	0.155091	0.0454205
chr6	26216543	26216643	7647242	0	-	0.56	(0.53,0.59]	chr6	582559	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2BC8	ENSG00000273802.2	ENST00000541790.3	protein_coding	protein_coding	protein_coding	protein_coding	26	115	2	1.79281	1.89905	2.00529	0.00367327	5.85405e-4	0.0300844	0.00793746
chr19	10395081	10395143	17459931	0	-	0.5	(0.49,0.53]	chr19	1460949	2	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDC37	ENSG00000105401.9	ENST00000222005.7:ENST00000591248.5:ENST00000589625.5:ENST00000589629.5:ENST00000593124.1:ENST00000589755.5:ENST00000588498.1:ENST00000588869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	32	2	1.8541	1.898545	1.94299	0.0205565	0.0152714	0.0996997	0.0828908
chr17	63831059	63831159	16319016	0	+	0.57	(0.53,0.59]	chr17	1323951	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PSMC5	ENSG00000087191.13	ENST00000310144.11:ENST00000582130.5:ENST00000584320.5:ENST00000579147.5:ENST00000580864.5:ENST00000585123.5:ENST00000581764.1:ENST00000584536.5:ENST00000585242.5:ENST00000578570.5:ENST00000375812.8:ENST00000581882.5:ENST00000579031.5:ENST00000584880.5:ENST00000580063.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	40	2	1.72707	1.8981850000000002	2.0693	0.0160468	0.015378	0.0860154	0.0833184
chr1	183627134	183627233	1404929	0	-	0.353535	(0.33,0.36]	chr1	142115	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ARPC5	ENSG00000162704.16	ENST00000359856.11:ENST00000367534.5:ENST00000462965.1:ENST00000294742.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	28	2	1.57515	1.898085	2.22102	0.0299562	0.00736622	0.130016	0.0490627
chr19	34378933	34379005	17300337	0	+	0.555556	(0.53,0.59]	chr19	1429850	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000589399.6:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000590362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	160	2	1.20607	1.898055	2.59004	0.0325368	6.87345e-6	0.136808	2.03033e-4
chr12	54238860	54238959	13342915	0	-	0.343434	(0.33,0.36]	chr12	1049602	75	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	1.8158	1.897865	1.97993	0.0161406	0.00884101	0.0860154	0.0563713
chr1	12012929	12013026	45887	0	+	0.453608	(0.42,0.455]	chr1	5936	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MFN2	ENSG00000116688.18	ENST00000444836.5:ENST00000674817.1:ENST00000675053.1:ENST00000675298.1:ENST00000675817.1:ENST00000674548.1:ENST00000675959.1:ENST00000675872.1:ENST00000676426.1:ENST00000674658.1:ENST00000674910.1:ENST00000675231.1:ENST00000235329.10:ENST00000676293.1:ENST00000675919.1:ENST00000675987.1:ENST00000675512.1:ENST00000675113.1:ENST00000675483.1:ENST00000675528.1:ENST00000675404.1:ENST00000676295.1:ENST00000675043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	19	2	1.86513	1.8977300000000001	1.93033	0.0505055	0.0357107	0.181202	0.147298
chr11	58620268	58620367	11955376	0	+	0.424242	(0.42,0.455]	chr11	914993	27	UTR3	UTR3:EXON_MRNA:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	19	2	1.86513	1.8977300000000001	1.93033	0.0505055	0.0357107	0.181202	0.147298
chr7	148987191	148987248	9124723	0	-	0.438596	(0.42,0.455]	chr7	696951	2	EXON_SMALL	EXON_SMALL	RNY1	ENSG00000201098.1	ENST00000364228.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	1388	4587	2	1.54409	1.8974600000000001	2.25083	5.51907e-4	1.05432e-6	0.00701459	4.6187e-5
chr10	73398316	73398385	11571641	0	-	0.507246	(0.49,0.53]	chr10	880911	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	33	2	1.78308	1.89741	2.01174	0.0425234	0.00708517	0.167547	0.0478761
chr22	21628334	21628417	18441860	0	-	0.566265	(0.53,0.59]	chr22	1572447	4	UTR3	UTR3:EXON_MRNA	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	36	2	1.48483	1.8973550000000001	2.30988	0.0472509	0.00643853	0.172726	0.0452349
chr22	21419743	21419842	18302056	0	+	0.434343	(0.42,0.455]	chr22	1554114	18	INTRON	INTRON	HIC2	ENSG00000169635.10	ENST00000407464.7	protein_coding	protein_coding	protein_coding	protein_coding	5	19	2	1.71996	1.8973499999999999	2.07474	0.0542346	0.0338882	0.199653	0.139841
chr8	26370511	26370610	9238347	0	+	0.444444	(0.42,0.455]	chr8	707539	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PPP2R2A	ENSG00000221914.11	ENST00000380737.8:ENST00000665949.1:ENST00000660435.1:ENST00000315985.7:ENST00000667651.1:ENST00000657943.1:ENST00000666129.1:ENST00000665751.1:ENST00000517754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	19	2	1.71996	1.8973499999999999	2.07474	0.0542346	0.0338882	0.199653	0.139841
chr22	21450676	21450774	18302371	0	+	0.571429	(0.53,0.59]	chr22	1554129	41	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	11	45	2	1.27822	1.8971200000000001	2.51602	0.050343	0.00264912	0.180951	0.024013
chrX	55024717	55024805	19084718	0	-	0.522727	(0.49,0.53]	chrX	1623775	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2:ENST00000644983.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	55	2	1.65324	1.8967450000000001	2.14025	0.0407792	8.76285e-4	0.163285	0.0101202
chr11	59800998	59801094	11960363	0	+	0.572917	(0.53,0.59]	chr11	915478	2	UTR3	UTR3:EXON_MRNA:INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000633708.1:ENST00000529177.5	protein_coding	protein_coding	protein_coding	protein_coding	8	37	2	1.88327	1.896345	1.90942	0.0298124	0.0105233	0.129773	0.0644466
chr17	39986589	39986689	16222465	0	+	0.56	(0.53,0.59]	chr17	1311723	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000580980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	37	2	1.88327	1.896345	1.90942	0.0298124	0.0105233	0.129773	0.0644466
chr5	83056294	83056393	6673240	0	-	0.272727	[0,0.29]	chr5	515109	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMEM167A	ENSG00000174695.10	ENST00000502346.2:ENST00000511450.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	20	2	1.63724	1.8960599999999999	2.15488	0.0436536	0.0255145	0.170594	0.115596
chr3	185922010	185922068	4628306	0	-	0.431034	(0.42,0.455]	chr3	382266	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	36	2	1.67452	1.8959800000000002	2.11744	0.0264395	0.00497755	0.117445	0.0381953
chr3	23919280	23919366	3358558	0	+	0.453488	(0.42,0.455]	chr3	294135	2	CDS	CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1:ENST00000643707.1:ENST00000354811.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	39	133	2	1.75651	1.89586	2.03521	0.00108219	4.835e-4	0.0118355	0.00679656
chr3	185917516	185917615	4628254	0	-	0.373737	(0.36,0.39]	chr3	382241	31	UTR3	UTR3:EXON_MRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000414862.5:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	22	2	1.72333	1.8958249999999999	2.06832	0.0514027	0.0122123	0.18321	0.0702898
chr5	139317619	139317719	6248973	0	+	0.33	(0.29,0.33]	chr5	486982	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	34	2	1.88142	1.89491	1.9084	0.0142455	0.00606296	0.0779233	0.0432922
chr9	35697509	35697602	10639430	0	-	0.548387	(0.53,0.59]	chr9	804959	7	UTR3	UTR3:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	19	83	2	1.82415	1.894225	1.9643	0.00312769	0.00299943	0.0266732	0.0264364
chr4	75644832	75644931	5472861	0	-	0.383838	(0.36,0.39]	chr4	438361	31	UTR3	UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	40	2	1.78741	1.89417	2.00093	0.00996106	0.00745326	0.0621728	0.0493081
chr17	75318075	75318173	16683182	0	-	0.295918	(0.29,0.33]	chr17	1373169	1	UTR3	UTR3:EXON_MRNA	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000581959.1	protein_coding	protein_coding	protein_coding	protein_coding	13	32	2	1.71966	1.89413	2.0686	0.0158467	0.00628604	0.0853454	0.0446912
chr5	95795972	95796069	6108516	0	+	0.340206	(0.33,0.36]	chr5	478272	21	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	29	78	2	1.88851	1.893895	1.89928	0.00151921	0.00138348	0.0161825	0.0143168
chr1	207657122	207657218	688948	0	+	0.3125	(0.29,0.33]	chr1	69958	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	CR1L:CD46P1	ENSG00000197721.17:ENSG00000244703.3	ENST00000531844.5:ENST00000508064.7:ENST00000441364.1	protein_coding	protein_coding	protein_coding:unprocessed_pseudogene	protein_coding:retained_intron:unprocessed_pseudogene	11	30	2	1.79203	1.89309	1.99415	0.0333928	0.00781937	0.140128	0.0511606
chr1	180885348	180885446	586619	0	+	0.316327	(0.29,0.33]	chr1	60742	14	UTR3	UTR3:EXON_MRNA	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	16	40	2	1.79203	1.8929200000000002	1.99381	0.00781937	0.00468649	0.0511606	0.0362871
chr12	6770527	6770612	12713983	0	+	0.635294	(0.59,1]	chr12	986785	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000538057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	122	2	1.85913	1.892915	1.9267	0.00799801	0.00366956	0.0527876	0.0300597
chr1	156333546	156333613	1314278	0	-	0.447761	(0.42,0.455]	chr1	133454	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CCT3	ENSG00000163468.15	ENST00000295688.8:ENST00000368258.7:ENST00000368259.6:ENST00000368262.7:ENST00000472765.6:ENST00000413555.5:ENST00000496684.6:ENST00000533194.5:ENST00000463132.5:ENST00000446905.5:ENST00000490221.5:ENST00000478640.6:ENST00000415548.1:ENST00000368256.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	62	2	1.35847	1.89289	2.42731	0.0211873	5.94546e-4	0.102464	0.00805086
chr21	8215605	8215704	18041174	0	+	0.474747	(0.455,0.49]	chr21	1530814	30	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	4954	16842	2	1.64918	1.892575	2.13597	2.32163e-4	2.98934e-6	0.00355018	1.11479e-4
chr8	47977863	47977962	9316312	0	+	0.292929	(0.29,0.33]	chr8	713600	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MCM4	ENSG00000104738.18	ENST00000262105.6:ENST00000649973.1:ENST00000648533.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	37	2	1.71387	1.892415	2.07096	0.0355849	0.00195265	0.147262	0.0186112
chr1	36303795	36303856	141721	0	+	0.672131	(0.59,1]	chr1	17605	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	5	40	2	1.74555	1.8923800000000002	2.03921	0.0444308	0.0371471	0.165174	0.151849
chr6	37170405	37170490	7136247	0	+	0.752941	(0.59,1]	chr6	549926	4	UTR5	UTR5:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	27	213	2	1.53893	1.89228	2.24563	0.0134572	2.74925e-4	0.075018	0.00407288
chr3	196349644	196349743	4664961	0	-	0.363636	(0.36,0.39]	chr3	385869	21	UTR3	UTR3:EXON_MRNA	UBXN7	ENSG00000163960.12	ENST00000296328.9	protein_coding	protein_coding	protein_coding	protein_coding	9	29	2	1.81435	1.89216	1.96997	0.0302191	0.00890772	0.129773	0.0565003
chr3	186789807	186789897	3958291	0	+	0.288889	[0,0.29]	chr3	333880	7	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	38	2	1.47243	1.89188	2.31133	0.0143978	0.00696038	0.078511	0.0474632
chr15	52065395	52065494	14935503	0	+	0.343434	(0.33,0.36]	chr15	1174235	5	UTR3	UTR3:EXON_MRNA	MAPK6	ENSG00000069956.13	ENST00000681888.1:ENST00000261845.7:ENST00000680066.1:ENST00000680777.1:ENST00000680652.1	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.81673	1.8915899999999999	1.96645	0.0197415	0.0119793	0.095966	0.0700473
chrX	134427802	134427901	18863556	0	+	0.333333	(0.33,0.36]	chrX	1607356	26	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.81673	1.8915899999999999	1.96645	0.0197415	0.0119793	0.095966	0.0700473
chr1	219987316	219987404	1510865	0	-	0.420455	(0.42,0.455]	chr1	151017	3	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5	protein_coding	protein_coding	protein_coding	protein_coding	23	76	2	1.56038	1.8914	2.22242	0.00625287	0.001203	0.0444654	0.0134762
chr17	1345439	1345499	16398380	0	-	0.45	(0.42,0.455]	chr17	1334231	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	56	2	1.722	1.891325	2.06065	0.0179091	0.0013812	0.0918323	0.014307
chr10	96750811	96750899	11210222	0	+	0.511364	(0.49,0.53]	chr10	852817	7	EXON_PSEUDO	EXON_PSEUDO	RPL13AP5	ENSG00000236552.2	ENST00000439189.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	22	81	2	1.69045	1.89127	2.09209	0.00399133	0.00158363	0.0319162	0.0167908
chr15	76225848	76225929	15381532	0	-	0.345679	(0.33,0.36]	chr15	1216308	1	CDS	CDS:UTR3:EXON_MRNA	ETFA	ENSG00000140374.16	ENST00000557943.6:ENST00000433983.6:ENST00000557975.5:ENST00000267950.12:ENST00000565910.5:ENST00000560179.1:ENST00000560726.5:ENST00000559602.5:ENST00000559973.5:ENST00000560595.5:ENST00000560899.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	39	2	1.65713	1.89105	2.12497	0.0528205	0.00139338	0.195536	0.0144011
chr22	19467872	19467937	18433753	0	-	0.553846	(0.53,0.59]	chr22	1570904	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	36	2	1.71269	1.8909950000000002	2.0693	0.0222391	0.0160468	0.104593	0.0860154
chr6	31836997	31837075	7116784	0	+	0.423077	(0.42,0.455]	chr6	546226	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XXbac-BPG254B15.11:SNHG32	ENSG00000285565.1:ENSG00000204387.14	ENST00000649802.1:ENST00000375640.7:ENST00000375641.6:ENST00000375635.6:ENST00000375638.7:ENST00000648677.1:ENST00000375642.6:ENST00000614363.4:ENST00000395789.5:ENST00000375633.5:ENST00000395788.3	lncRNA	lncRNA	lncRNA	lncRNA	49	174	2	1.25133	1.8906900000000002	2.53005	0.0160073	2.95461e-6	0.0862415	1.10282e-4
chr1	53050704	53050803	197913	0	+	0.30303	(0.29,0.33]	chr1	25186	1	UTR3	UTR3:EXON_MRNA	SCP2	ENSG00000116171.19	ENST00000371514.8:ENST00000478631.6:ENST00000407246.6:ENST00000371509.8:ENST00000528311.5:ENST00000430330.6:ENST00000408941.7:ENST00000533119.1:ENST00000484100.5:ENST00000435345.6:ENST00000488965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	19	2	1.78695	1.8905500000000002	1.99415	0.0333928	0.0289406	0.140128	0.127328
chr17	28579750	28579837	16485997	0	-	0.528736	(0.49,0.53]	chr17	1347794	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-192H23.4:SPAG5	ENSG00000258472.9:ENSG00000076382.17	ENST00000481916.6:ENST00000321765.10:ENST00000581133.5:ENST00000580682.5:ENST00000577259.1:ENST00000580406.1:ENST00000378976.5:ENST00000578230.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	32	2	1.87747	1.890485	1.9035	0.0295204	0.0123515	0.129773	0.0708681
chr17	42315744	42315800	16547439	0	-	0.571429	(0.53,0.59]	chr17	1357254	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	STAT3	ENSG00000168610.16	ENST00000264657.10:ENST00000678044.1:ENST00000678906.1:ENST00000678960.1:ENST00000679014.1:ENST00000678043.1:ENST00000677442.1:ENST00000677723.1:ENST00000679166.1:ENST00000678792.1:ENST00000678764.1:ENST00000678048.1:ENST00000678674.1:ENST00000678445.1:ENST00000678913.1:ENST00000677421.1:ENST00000679231.1:ENST00000677030.1:ENST00000678827.1:ENST00000679185.1:ENST00000677820.1:ENST00000678905.1:ENST00000677479.1:ENST00000676636.1:ENST00000678572.1:ENST00000677271.1:ENST00000677152.1:ENST00000677603.1:ENST00000677002.1:ENST00000491272.2:ENST00000677500.1:ENST00000677346.1:ENST00000462286.3:ENST00000585517.5:ENST00000678535.1:ENST00000677308.1:ENST00000389272.7:ENST00000588969.5:ENST00000677763.1:ENST00000404395.3:ENST00000462269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	24	2	1.87133	1.8904299999999998	1.90953	0.0517711	0.0308819	0.193577	0.130016
chr19	50820249	50820346	17612012	0	-	0.587629	(0.53,0.59]	chr19	1485266	2	CDS	CDS:UTR3:EXON_MRNA	KLK1	ENSG00000167748.11	ENST00000301420.3:ENST00000593325.5:ENST00000593859.5:ENST00000596300.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	24	2	1.87133	1.8904299999999998	1.90953	0.0517711	0.0308819	0.193577	0.130016
chr20	50578489	50578559	17816162	0	+	0.557143	(0.53,0.59]	chr20	1507131	2	CDS	CDS:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	5	24	2	1.87133	1.8904299999999998	1.90953	0.0517711	0.0308819	0.193577	0.130016
chr8	108240001	108240075	10002699	0	-	0.432432	(0.42,0.455]	chr8	754220	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	104	2	1.26755	1.890375	2.5132	0.0396423	1.93765e-5	0.161272	4.72961e-4
chr1	6871765	6871856	20653	0	+	0.406593	(0.39,0.42]	chr1	3261	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1:ENST00000470648.5:ENST00000461580.5:ENST00000472283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	20	2	1.79377	1.890265	1.98676	0.0439902	0.0299302	0.163596	0.129773
chr2	186508912	186509002	2260950	0	+	0.311111	(0.29,0.33]	chr2	205567	3	UTR3	UTR3:EXON_MRNA	ZC3H15	ENSG00000065548.18	ENST00000337859.11:ENST00000445547.1	protein_coding	protein_coding	protein_coding	protein_coding	11	28	2	1.66431	1.89012	2.11593	0.0225076	0.00799071	0.10505	0.0527444
chr12	49265130	49265181	12865632	0	+	0.607843	(0.59,1]	chr12	999044	2	UTR5	UTR5:EXON_MRNA:INTRON	TUBA1C	ENSG00000167553.16	ENST00000541364.5:ENST00000549818.5:ENST00000552448.1:ENST00000552125.1:ENST00000549183.1:ENST00000301072.11:ENST00000639419.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	250	2	1.47347	1.889685	2.3059	0.0113862	1.93437e-4	0.0672415	0.00307555
chr10	75210844	75210938	11126399	0	+	0.734043	(0.59,1]	chr10	846620	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VDAC2	ENSG00000165637.13	ENST00000543351.5:ENST00000298468.9:ENST00000344036.8:ENST00000332211.10:ENST00000472137.5:ENST00000470745.5:ENST00000475142.5:ENST00000481876.5:ENST00000313132.8:ENST00000498394.5:ENST00000468285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	142	2	1.18569	1.8895749999999998	2.59346	0.0486001	2.16651e-4	0.182642	0.00335206
chrX	74585663	74585763	19117459	0	-	0.41	(0.39,0.42]	chrX	1626323	28	UTR3	UTR3:EXON_MRNA	RLIM	ENSG00000131263.13	ENST00000332687.11	protein_coding	protein_coding	protein_coding	protein_coding	5	18	2	1.77926	1.889185	1.99911	0.0477207	0.0429531	0.17993	0.161091
chr11	5299822	5299921	12241084	0	-	0.353535	(0.33,0.36]	chr11	946132	76	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7	ENST00000380252.6:ENST00000380259.7:ENST00000646569.1:ENST00000643199.1:ENST00000292896.3:ENST00000380237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	18	2	1.69981	1.888585	2.07736	0.0442037	0.0370662	0.172163	0.145667
chr6	110893805	110893900	7331120	0	+	0.347368	(0.33,0.36]	chr6	563688	3	CDS	CDS:UTR3:EXON_MRNA	AMD1	ENSG00000123505.19	ENST00000451850.6:ENST00000675380.1:ENST00000368882.8:ENST00000672937.2:ENST00000368885.8:ENST00000368877.9:ENST00000368876.2:ENST00000612642.4:ENST00000619590.1:ENST00000465404.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	18	2	1.69981	1.888585	2.07736	0.0442037	0.0370662	0.172163	0.145667
chr2	178432006	178432096	3039708	0	-	0.388889	(0.36,0.39]	chr2	268857	9	UTR3	UTR3:EXON_MRNA	PRKRA	ENSG00000180228.14	ENST00000677859.1:ENST00000325748.9:ENST00000490501.5:ENST00000678775.1:ENST00000677689.1:ENST00000676922.1:ENST00000676832.1:ENST00000677584.1:ENST00000678053.1:ENST00000679037.1:ENST00000678845.1:ENST00000677981.1:ENST00000677206.1:ENST00000676505.1:ENST00000448279.2:ENST00000676586.1:ENST00000474793.6:ENST00000677136.1:ENST00000677386.1:ENST00000677460.1:ENST00000678167.1:ENST00000677253.1:ENST00000457633.2:ENST00000678058.1:ENST00000679202.1:ENST00000676752.1:ENST00000424699.5:ENST00000487082.5:ENST00000432031.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	25	2	1.82984	1.88838	1.94692	0.0234753	0.0192083	0.108434	0.0943643
chr12	54238959	54239059	13342916	0	-	0.43	(0.42,0.455]	chr12	1049602	76	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	10	36	2	1.44978	1.8881700000000001	2.32656	0.0463803	0.00298867	0.177188	0.0255712
chr22	29286992	29287063	18336593	0	+	0.535211	(0.53,0.59]	chr22	1558179	2	CDS	CDS:EXON_MRNA	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	42	2	1.78041	1.8875350000000002	1.99466	0.0407112	0.0049448	0.163285	0.0367601
chr16	3672699	3672759	15830628	0	-	0.6	(0.59,1]	chr16	1263639	1	CDS	CDS:EXON_MRNA:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000575671.5:ENST00000573872.5:ENST00000576335.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	40	2	1.81066	1.8873	1.96394	0.0453144	0.0369806	0.174798	0.145401
chr19	41305754	41305854	17334323	0	+	0.62	(0.59,1]	chr19	1436794	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000595018.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000617305.4:ENST00000593587.5:ENST00000263367.7:ENST00000599614.5:ENST00000595806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	61	2	1.40785	1.8868900000000002	2.36593	0.0398271	0.0141097	0.152926	0.077233
chr7	5606359	5606458	8112131	0	+	0.727273	(0.59,1]	chr7	620041	10	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	97	2	1.65143	1.8864	2.12137	0.0141751	0.00514111	0.0776158	0.0393276
chr7	128767455	128767555	8521829	0	+	0.47	(0.455,0.49]	chr7	650191	1	CDS	CDS:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	50	182	2	1.78173	1.8863400000000001	1.99095	0.00221775	1.16241e-4	0.0211839	0.0020505
chr22	30334399	30334496	18469652	0	-	0.453608	(0.42,0.455]	chr22	1575821	26	UTR3	UTR3:EXON_MRNA	SF3A1	ENSG00000099995.19	ENST00000215793.13	protein_coding	protein_coding	protein_coding	protein_coding	13	40	2	1.16706	1.88605	2.60504	0.0581314	0.00201537	0.199312	0.0197874
chr19	11666549	11666645	17464493	0	-	0.447917	(0.42,0.455]	chr19	1462117	6	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P10	ENSG00000214223.4	ENST00000444945.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	42	2	1.58516	1.8860449999999997	2.18693	0.0389398	0.00200137	0.158547	0.0189555
chr6	34821444	34821542	7125960	0	+	0.44898	(0.42,0.455]	chr6	548397	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	UHRF1BP1:Y_RNA	ENSG00000065060.17:ENSG00000206717.1	ENST00000452449.6:ENST00000192788.6:ENST00000383990.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	25	86	2	1.80508	1.885955	1.96683	0.00215039	0.00155867	0.0200768	0.0165564
chr17	47683566	47683663	16251999	0	+	0.28866000000000003	[0,0.29]	chr17	1316763	13	UTR3	UTR3:EXON_MRNA:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	34	2	1.49955	1.885935	2.27232	0.0225137	0.00296574	0.10505	0.0263871
chr1	224389035	224389135	1526429	0	-	0.32	(0.29,0.33]	chr1	152610	40	UTR3	UTR3:EXON_MRNA:INTRON	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	9	22	2	1.62619	1.8852250000000002	2.14426	0.0358231	0.0142448	0.147298	0.077929
chrM	11842	11940	19377259	0	+	0.5	(0.49,0.53]	chrM	1649826	11	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	150	541	2	1.70222	1.88492	2.06762	3.39588e-4	2.90705e-5	0.00516649	6.6146e-4
chr1	114717684	114717781	1239592	0	-	0.402062	(0.39,0.42]	chr1	121344	9	UTR3	UTR3:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5	protein_coding	protein_coding	protein_coding	protein_coding	20	65	2	1.61043	1.88481	2.15919	0.0104687	7.93465e-4	0.063428	0.00934275
chr15	78897554	78897651	15042660	0	+	0.340206	(0.33,0.36]	chr15	1183475	6	UTR3	UTR3:EXON_MRNA	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7	protein_coding	protein_coding	protein_coding	protein_coding	11	32	2	1.76184	1.8847450000000001	2.00765	0.0287001	0.00863184	0.128757	0.0556009
chr11	93721512	93721541	12076158	0	+	0.413793	(0.39,0.42]	chr11	930598	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP295:SCARNA9	ENSG00000166004.15:ENSG00000254911.3	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1:ENST00000530422.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	31	96	2	1.45868	1.88449	2.3103	0.00878352	1.16997e-4	0.0562439	0.00222617
chr18	9954604	9954703	16756136	0	+	0.393939	(0.39,0.42]	chr18	1381801	5	UTR3	UTR3:EXON_MRNA	VAPA	ENSG00000101558.14	ENST00000400000.7	protein_coding	protein_coding	protein_coding	protein_coding	40	125	2	1.74023	1.884325	2.02842	0.00148638	3.04834e-4	0.0151359	0.00472061
chr22	39314765	39314846	18513213	0	-	0.641975	(0.59,1]	chr22	1580598	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000467105.1:ENST00000402527.5:ENST00000481985.5:ENST00000471290.1:ENST00000453303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	29	211	2	1.62877	1.8843	2.13983	0.00533657	9.79291e-4	0.0392268	0.0116574
chr5	10280353	10280452	6446895	0	-	0.30303	(0.29,0.33]	chr5	502163	29	UTR3	UTR3:EXON_MRNA:INTRON	CMBL	ENSG00000164237.9	ENST00000503834.1:ENST00000296658.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	28	2	1.62519	1.88302	2.14085	0.0201432	0.0117968	0.0984041	0.0686664
chr17	7513114	7513208	16105307	0	+	0.542553	(0.53,0.59]	chr17	1296797	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	92	2	1.40711	1.8830050000000003	2.3589	0.024141	1.73841e-4	0.113547	0.00282343
chrX	124101185	124101283	18852591	0	+	0.336735	(0.33,0.36]	chrX	1606330	7	UTR3	UTR3:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	52	2	1.51331	1.882975	2.25264	0.00908699	0.00367014	0.0575997	0.0308215
chr5	141528861	141528941	6875178	0	-	0.5375	(0.53,0.59]	chr5	526398	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5:ENST00000491754.5:ENST00000494967.5:ENST00000518484.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	28	2	1.85636	1.8829449999999999	1.90953	0.0517711	0.0197135	0.193577	0.0983378
chrX	36374792	36374889	19038810	0	-	0.42268	(0.42,0.455]	chrX	1618261	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RP11-87M18.2:RPS15AP40	ENSG00000226484.2:ENSG00000233921.2	ENST00000455438.2:ENST00000419621.2	lncRNA	lncRNA	lncRNA:processed_pseudogene	lncRNA:processed_pseudogene	8	29	2	1.73054	1.88293	2.03532	0.040947	0.0157335	0.163285	0.0850622
chr21	31685397	31685484	18211332	0	-	0.517241	(0.49,0.53]	chr21	1545284	1	CDS	CDS:EXON_MRNA	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	50	2	1.26856	1.88283	2.4971	0.0541847	6.41492e-4	0.199653	0.00796686
chrX	120438955	120439054	19196149	0	-	0.343434	(0.33,0.36]	chrX	1631971	26	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	31	2	1.82394	1.882705	1.94147	0.0494504	0.0049844	0.18557	0.0370021
chr3	40309706	40309784	3429088	0	+	0.692308	(0.59,1]	chr3	298210	1	UTR5	UTR5:EXON_MRNA	EIF1B	ENSG00000114784.4	ENST00000232905.4:ENST00000462088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	124	2	1.31329	1.88265	2.45201	0.0418917	4.67144e-4	0.166188	0.00617739
chr19	38724247	38724339	17323700	0	+	0.565217	(0.53,0.59]	chr19	1434347	2	CDS	CDS:EXON_MRNA:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding	8	34	2	1.60439	1.88238	2.16037	0.0254312	0.0243675	0.117089	0.111797
chr1	153809878	153809977	1298806	0	-	0.474747	(0.455,0.49]	chr1	130472	53	UTR3	UTR3:EXON_MRNA:INTRON	GATAD2B	ENSG00000143614.10	ENST00000637918.1:ENST00000368655.5:ENST00000634544.1	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	1.68956	1.8821149999999998	2.07467	0.0381365	0.00905778	0.155455	0.0574177
chr17	48621833	48621930	16578561	0	-	0.546392	(0.53,0.59]	chr17	1361937	8	UTR3	UTR3:EXON_MRNA:INTRON	HOXB7:HOXB9	ENSG00000260027.5:ENSG00000170689.10	ENST00000567101.2:ENST00000311177.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	140	2	1.60498	1.882085	2.15919	0.00693227	1.44154e-4	0.0473083	0.00242438
chr11	10803210	10803294	12272607	0	-	0.452381	(0.42,0.455]	chr11	949004	1	CDS	CDS:EXON_MRNA:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000531416.6:ENST00000531647.6:ENST00000532082.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	29	2	1.78888	1.88198	1.97508	0.0259111	0.0147202	0.117079	0.0802571
chr10	68984871	68984969	11093426	0	+	0.255102	[0,0.29]	chr10	843302	22	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	30	76	2	1.70472	1.88194	2.05916	0.00932364	2.72434e-4	0.0586689	0.00405146
chr1	175006771	175006841	559239	0	+	0.414286	(0.39,0.42]	chr1	58829	1	CDS	CDS:EXON_MRNA	CACYBP	ENSG00000116161.18	ENST00000613570.4:ENST00000367679.7:ENST00000473925.1:ENST00000405362.1:ENST00000469173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	27	2	1.84882	1.8818549999999998	1.91489	0.0214409	0.0197788	0.102904	0.0960939
chr11	33706171	33706270	12344174	0	-	0.40404	(0.39,0.42]	chr11	953994	33	UTR3	UTR3:EXON_MRNA:INTRON	RP4-541C22.8:CD59	ENSG00000284969.1:ENSG00000085063.17	ENST00000534312.5:ENST00000527926.5:ENST00000525763.5:ENST00000533181.1:ENST00000642928.2:ENST00000651785.1:ENST00000652678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	27	2	1.84882	1.8818549999999998	1.91489	0.0214409	0.0197788	0.102904	0.0960939
chr17	29260938	29261038	16490878	0	-	0.41	(0.39,0.42]	chr17	1348880	52	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.84882	1.8818549999999998	1.91489	0.0214409	0.0197788	0.102904	0.0960939
chr6	30705800	30705899	7659055	0	-	0.555556	(0.53,0.59]	chr6	584223	23	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000417033.1:ENST00000492462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	49	2	1.84013	1.88096	1.92179	0.0100259	0.00973469	0.0623334	0.0611259
chr3	100363623	100363720	4325485	0	-	0.350515	(0.33,0.36]	chr3	360552	3	UTR3	UTR3:EXON_MRNA	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	1.82394	1.88089	1.93784	0.0494504	0.0278501	0.18557	0.123353
chr8	129352281	129352380	10084260	0	-	0.30303	(0.29,0.33]	chr8	758165	8	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1:ENST00000674741.1:ENST00000663521.1:ENST00000676273.1:ENST00000667643.1:ENST00000668791.1:ENST00000663716.1:ENST00000663572.1:ENST00000676148.1:ENST00000667962.1:ENST00000674877.1:ENST00000675316.1:ENST00000674656.1:ENST00000446592.7:ENST00000667341.1:ENST00000675186.1:ENST00000652971.1:ENST00000661447.1:ENST00000674863.1:ENST00000675498.1:ENST00000675527.1:ENST00000676108.1:ENST00000657647.1:ENST00000675589.1:ENST00000675913.1:ENST00000675109.1:ENST00000671632.1:ENST00000671311.1:ENST00000676099.1:ENST00000660652.1:ENST00000675522.1:ENST00000675183.1:ENST00000658861.1:ENST00000663991.1:ENST00000674599.1:ENST00000675506.1:ENST00000675044.1:ENST00000675435.1:ENST00000674639.1:ENST00000676069.1:ENST00000675532.1:ENST00000674762.1:ENST00000523151.6:ENST00000675948.1:ENST00000665364.1:ENST00000657251.1:ENST00000675166.1:ENST00000674883.1:ENST00000675867.1:ENST00000675722.1:ENST00000674580.1:ENST00000675393.1	lncRNA	lncRNA	lncRNA	lncRNA	10	25	2	1.75944	1.880725	2.00201	0.0226161	0.0134564	0.107244	0.0744942
chr1	96447028	96447127	366397	0	+	0.424242	(0.42,0.455]	chr1	35865	2	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	58	2	1.15028	1.880565	2.61085	0.0382754	7.93561e-4	0.149227	0.00988333
chr6	31625459	31625535	7115779	0	+	0.592105	(0.59,1]	chr6	545829	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5:ENST00000464079.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	85	2	1.74291	1.8805450000000001	2.01818	0.0212394	0.00523578	0.102152	0.038667
chrX	155239241	155239341	18920372	0	+	0.33	(0.29,0.33]	chrX	1612534	5	UTR3	UTR3:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000625964.2:ENST00000286428.7	protein_coding	protein_coding	protein_coding	protein_coding	16	44	2	1.75944	1.880535	2.00163	0.0226161	0.00163218	0.107244	0.0162265
chr1	182887434	182887525	595192	0	+	0.373626	(0.36,0.39]	chr1	61681	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	DHX9	ENSG00000135829.17	ENST00000367549.4:ENST00000485081.5:ENST00000473076.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	24	2	1.78505	1.880255	1.97546	0.0239316	0.0228572	0.109927	0.108215
chr7	104671375	104671475	8445862	0	+	0.32	(0.29,0.33]	chr7	645154	19	INTRON	INTRON	LHFPL3	ENSG00000187416.13	ENST00000424859.7:ENST00000401970.3:ENST00000683240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	46	2	1.75053	1.880055	2.00958	0.0111992	0.00202498	0.0661526	0.0191427
chr10	73771482	73771579	11115885	0	+	0.463918	(0.455,0.49]	chr10	845933	5	UTR3	UTR3:EXON_MRNA	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	29	2	1.8708	1.8799700000000001	1.88914	0.0324007	0.0127583	0.134751	0.0719798
chr12	56688162	56688244	13352462	0	-	0.658537	(0.59,1]	chr12	1051828	3	UTR5	UTR5:EXON_MRNA	PTGES3	ENSG00000110958.16	ENST00000614328.4:ENST00000262033.11:ENST00000414274.7:ENST00000448157.6:ENST00000456859.2	protein_coding	protein_coding	protein_coding	protein_coding	26	175	2	1.3262100000000001	1.87976	2.43331	0.0198603	5.15628e-4	0.0964828	0.00667434
chr1	202331834	202331934	1450333	0	-	0.44	(0.42,0.455]	chr1	145679	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	UBE2T	ENSG00000077152.11	ENST00000487227.6:ENST00000646595.1:ENST00000646651.1:ENST00000643045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	43	2	1.63927	1.87975	2.12023	0.0455517	0.00189178	0.175554	0.0181965
chr1	47218641	47218739	985536	0	-	0.377551	(0.36,0.39]	chr1	104046	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3:ENST00000459729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	19	2	1.61529	1.879495	2.1437	0.0466766	0.0340515	0.171348	0.141465
chr12	123261352	123261448	13594890	0	-	0.375	(0.36,0.39]	chr12	1070943	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CDK2AP1	ENSG00000111328.7	ENST00000652466.1:ENST00000541002.7:ENST00000618072.4:ENST00000261692.7:ENST00000535979.5:ENST00000538446.5:ENST00000542174.5:ENST00000544658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	19	2	1.61529	1.879495	2.1437	0.0466766	0.0340515	0.171348	0.141465
chr2	152676685	152676779	2944266	0	-	0.521277	(0.49,0.53]	chr2	261614	4	CDS	CDS:UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000354363.11:ENST00000545856.7:ENST00000493468.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	53	2	1.5062	1.87934	2.25248	0.0231629	0.00144423	0.107036	0.0155183
chr21	33534665	33534753	18220658	0	-	0.534091	(0.53,0.59]	chr21	1546418	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000497313.5:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000488791.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	41	2	1.49715	1.87906	2.26097	0.0455868	0.00389622	0.175638	0.0313006
chr15	40212573	40212648	14880138	0	+	0.373333	(0.36,0.39]	chr15	1168258	2	CDS	CDS:EXON_MRNA	BUB1B	ENSG00000156970.13	ENST00000412359.7:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding	5	16	2	1.85874	1.87873	1.89872	0.056542	0.0415243	0.19417	0.164804
chr12	49763090	49763187	12869273	0	+	0.56701	(0.53,0.59]	chr12	999645	3	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	133	2	1.22948	1.878025	2.52657	0.0319641	1.98324e-5	0.134978	4.83181e-4
chr6	17737457	17737556	7619815	0	-	0.424242	(0.42,0.455]	chr6	580634	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201442.2	ENST00000364572.2	misc_RNA	misc_RNA	misc_RNA	misc_RNA	5	19	2	1.72071	1.878015	2.03532	0.0499984	0.040947	0.179758	0.163285
chrX	124086695	124086770	18852438	0	+	0.426667	(0.42,0.455]	chrX	1606302	3	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	19	2	1.72071	1.878015	2.03532	0.0499984	0.040947	0.179758	0.163285
chr8	100721583	100721674	9976142	0	-	0.769231	(0.59,1]	chr8	752718	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	38	283	2	1.62186	1.8780000000000001	2.13414	0.00529078	3.82109e-4	0.0402822	0.00529347
chr9	125337017	125337095	10461492	0	+	0.538462	(0.53,0.59]	chr9	788094	1	CDS	CDS:UTR3:EXON_MRNA:SS3_PROX:INTRON	GAPVD1	ENSG00000165219.22	ENST00000497580.5:ENST00000297933.11:ENST00000470056.5:ENST00000394105.6:ENST00000394083.6:ENST00000495955.5:ENST00000467750.5:ENST00000394104.6:ENST00000312123.13:ENST00000265956.8:ENST00000431329.5:ENST00000436712.2:ENST00000479511.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	30	2	1.48483	1.87798	2.27113	0.0472509	0.0178853	0.172726	0.0918323
chr9	112219199	112219298	10802874	0	-	0.363636	(0.36,0.39]	chr9	818409	16	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	35	110	2	1.64964	1.877755	2.10587	0.00543227	1.46617e-4	0.0410348	0.00245994
chr10	68342528	68342623	11089771	0	+	0.273684	[0,0.29]	chr10	842858	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000265866.12:ENST00000491200.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	15	2	1.80685	1.87763	1.94841	0.0438772	0.0427374	0.168094	0.163572
chr17	68532238	68532337	16337436	0	+	0.262626	[0,0.29]	chr17	1325397	19	UTR3	UTR3:EXON_MRNA:INTRON	PRKAR1A	ENSG00000108946.15	ENST00000358598.6:ENST00000392711.5:ENST00000589228.6:ENST00000536854.6:ENST00000392710.8:ENST00000588188.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	15	2	1.80685	1.87763	1.94841	0.0438772	0.0427374	0.168094	0.163572
chr17	75889917	75890013	16685500	0	-	0.260417	[0,0.29]	chr17	1373702	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	15	2	1.80685	1.87763	1.94841	0.0438772	0.0427374	0.168094	0.163572
chr18	32129285	32129384	16810879	0	+	0.242424	[0,0.29]	chr18	1386626	2	UTR3	UTR3:EXON_MRNA	RNF138	ENSG00000134758.14	ENST00000261593.8:ENST00000257190.9:ENST00000577999.1	protein_coding	protein_coding	protein_coding	protein_coding	6	15	2	1.80685	1.87763	1.94841	0.0438772	0.0427374	0.168094	0.163572
chrX	124081379	124081453	18852383	0	+	0.27027	[0,0.29]	chrX	1606290	1	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	15	2	1.80685	1.87763	1.94841	0.0438772	0.0427374	0.168094	0.163572
chr17	49025617	49025666	16256380	0	+	0.489796	(0.455,0.49]	chr17	1317606	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	19	2	1.79605	1.8775149999999998	1.95898	0.047107	0.0427708	0.172269	0.168094
chr6	31829200	31829296	7116699	0	+	0.614583	(0.59,1]	chr6	546209	13	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	19	138	2	1.54575	1.87733	2.20891	0.0125054	0.00172261	0.0714717	0.0177928
chr11	66060656	66060731	11987460	0	+	0.506667	(0.49,0.53]	chr11	921327	2	CDS	CDS:EXON_MRNA	SF3B2	ENSG00000087365.16	ENST00000528302.5:ENST00000322535.11:ENST00000529994.1:ENST00000530981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	24	2	1.76393	1.8771849999999999	1.99044	0.0435903	0.0279906	0.170594	0.123926
chr1	156743352	156743448	1316762	0	-	0.583333	(0.53,0.59]	chr1	133965	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5:ENST00000482651.5:ENST00000477306.1:ENST00000368206.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	69	2	1.50436	1.8769049999999998	2.24945	0.0124716	0.00230882	0.0713206	0.0219135
chr17	36574941	36575037	16522432	0	-	0.541667	(0.53,0.59]	chr17	1351982	6	EXON_PSEUDO	EXON_PSEUDO	CTB-75G16.1	ENSG00000274756.1	ENST00000612648.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	42	2	1.51961	1.8768349999999998	2.23406	0.0261734	0.00870728	0.117079	0.0558165
chr20	64031980	64032044	17867833	0	+	0.578125	(0.53,0.59]	chr20	1511446	2	CDS	CDS:EXON_MRNA	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	7	27	2	1.39828	1.8766949999999998	2.35511	0.0486819	0.0445399	0.175495	0.172163
chr11	68892895	68892993	12433547	0	-	0.367347	(0.36,0.39]	chr11	966388	3	CDS	CDS:UTR3:EXON_MRNA	MRPL21	ENSG00000197345.13	ENST00000450904.6:ENST00000362034.7:ENST00000565125.5:ENST00000541279.1:ENST00000567045.5:ENST00000544567.5:ENST00000541265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	26	2	1.85874	1.876325	1.89391	0.0415243	0.0121625	0.164804	0.0701019
chr3	196051055	196051153	4663151	0	-	0.346939	(0.33,0.36]	chr3	385550	19	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	36	94	2	1.60006	1.87581	2.15156	0.00437386	1.82595e-4	0.0336189	0.00318224
chr1	205717782	205717882	1462033	0	-	0.26	[0,0.29]	chr1	147460	51	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	15	32	2	1.78518	1.87562	1.96606	0.0100719	0.00914185	0.0624353	0.0579527
chr6	89063594	89063690	7834733	0	-	0.333333	(0.33,0.36]	chr6	600036	2	EXON_SMALL	EXON_SMALL	RNU2-61P	ENSG00000223001.1	ENST00000411069.1	snRNA	snRNA	snRNA	snRNA	109	327	2	1.29264	1.875565	2.45849	0.0073082	9.49789e-7	0.0490627	3.82859e-5
chrX	155228383	155228482	18920261	0	+	0.484848	(0.455,0.49]	chrX	1612521	1	CDS	CDS:EXON_MRNA	VBP1	ENSG00000155959.12	ENST00000535916.5:ENST00000625964.2:ENST00000286428.7:ENST00000460509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	31	2	1.62103	1.8754849999999998	2.12994	0.0304832	0.0186223	0.130204	0.0952021
chr5	135334975	135335075	6847174	0	-	0.47	(0.455,0.49]	chr5	523983	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MACROH2A1	ENSG00000113648.16	ENST00000511689.5:ENST00000512507.5:ENST00000451949.6:ENST00000304332.8:ENST00000312469.8:ENST00000360597.8:ENST00000511494.5:ENST00000506671.5:ENST00000423969.6:ENST00000510038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	36	2	1.70534	1.87547	2.0456	0.0239221	0.00663817	0.109927	0.0456262
chr14	51255009	51255107	14278859	0	+	0.255102	[0,0.29]	chr14	1116425	6	UTR3	UTR3:EXON_MRNA	TMX1	ENSG00000139921.13	ENST00000457354.7:ENST00000556683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	15	2	1.5959700000000001	1.875425	2.15488	0.0533838	0.0436536	0.184995	0.170594
chr1	114750013	114750110	1239946	0	-	0.412371	(0.39,0.42]	chr1	121457	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000529046.5:ENST00000525132.1:ENST00000525878.5:ENST00000525970.5:ENST00000533818.5:ENST00000524652.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	31	2	1.36883	1.875345	2.38186	0.0460844	0.00601449	0.169423	0.0434483
chr1	629247	629340	466	0	+	0.473118	(0.455,0.49]	chr1	104	3	EXON_PSEUDO	EXON_PSEUDO	MTND1P23	ENSG00000225972.1	ENST00000416931.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	37	124	2	1.65662	1.8753199999999999	2.09402	0.00229014	3.17965e-4	0.0217441	0.00456587
chr2	126696492	126696579	2056364	0	+	0.505747	(0.49,0.53]	chr2	192631	5	UTR3	UTR3:EXON_MRNA	GYPC	ENSG00000136732.16	ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding	21	86	2	1.53791	1.87514	2.21237	0.0209293	2.10038e-4	0.100962	0.00327655
chr4	139388984	139389084	5128466	0	+	0.36	(0.33,0.36]	chr4	415252	10	UTR3	UTR3:EXON_MRNA:INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000515576.1	protein_coding	protein_coding	protein_coding	protein_coding	12	36	2	1.82006	1.874415	1.92877	0.0323353	0.00391839	0.135977	0.0314356
chr17	50392817	50392897	16585227	0	-	0.5375	(0.53,0.59]	chr17	1363138	2	CDS	CDS:EXON_MRNA	LRRC59	ENSG00000108829.10	ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	6	28	2	1.76849	1.873885	1.97928	0.0420665	0.0218546	0.158792	0.104785
chr1	182858550	182858640	594878	0	+	0.422222	(0.42,0.455]	chr1	61584	1	CDS	CDS:EXON_MRNA	DHX9	ENSG00000135829.17	ENST00000367549.4	protein_coding	protein_coding	protein_coding	protein_coding	12	42	2	1.79613	1.87352	1.95091	0.0121028	0.00692158	0.0701019	0.0472369
chr17	49052893	49052991	16256675	0	+	0.418367	(0.39,0.42]	chr17	1317683	36	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	13	41	2	1.26453	1.8734099999999998	2.48229	0.0548372	8.62602e-4	0.189511	0.0105966
chr14	96566919	96567017	14476253	0	+	0.357143	(0.33,0.36]	chr14	1130890	20	UTR3	UTR3:EXON_MRNA	PAPOLA	ENSG00000090060.19	ENST00000216277.13	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.57515	1.872865	2.17058	0.0299562	0.01664	0.130016	0.0878065
chr2	61499712	61499801	2690580	0	-	0.337079	(0.33,0.36]	chr2	240392	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	55	2	1.3818	1.87264	2.36348	0.0413881	2.33097e-4	0.164501	0.00355764
chr2	47807518	47807617	2633989	0	-	0.373737	(0.36,0.39]	chr2	237041	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000434234.5:ENST00000405808.5:ENST00000684712.1:ENST00000682451.1:ENST00000465204.5:ENST00000403359.8:ENST00000402508.5:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000684523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	19	2	1.72333	1.872255	2.02118	0.0514027	0.0251625	0.18321	0.117055
chr2	241343042	241343093	2467796	0	+	0.372549	(0.36,0.39]	chr2	223225	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000360051.7:ENST00000616972.4:ENST00000401990.5:ENST00000407971.5:ENST00000391971.7:ENST00000402092.6:ENST00000464128.5:ENST00000484167.5:ENST00000421717.1:ENST00000481500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	19	2	1.72333	1.872255	2.02118	0.0514027	0.0251625	0.18321	0.117055
chr2	10130450	10130547	1629059	0	+	0.329897	(0.29,0.33]	chr2	161739	12	UTR3	UTR3:EXON_MRNA:INTRON	RRM2	ENSG00000171848.16	ENST00000641198.1:ENST00000360566.6:ENST00000652660.1:ENST00000641498.1:ENST00000304567.10:ENST00000615152.5:ENST00000646978.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	33	2	1.64584	1.87222	2.0986	0.0122524	0.00919301	0.0705132	0.0581197
chr7	76327194	76327294	8863387	0	-	0.23	[0,0.29]	chr7	677476	5	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	26	57	2	1.7276	1.8721450000000002	2.01669	0.00490378	0.00128769	0.0366648	0.0141003
chr21	8394321	8394420	18041473	0	+	0.575758	(0.53,0.59]	chr21	1530861	55	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	10972	46192	2	1.63547	1.871845	2.10822	3.214e-4	7.47831e-6	0.00460458	2.37533e-4
chr6	37175046	37175141	7136304	0	+	0.578947	(0.53,0.59]	chr6	549953	11	UTR3	UTR3:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	202	853	2	1.83393	1.870915	1.9079	1.78499e-4	7.17924e-5	0.00311788	0.00137833
chr11	106097304	106097403	12122394	0	+	0.292929	(0.29,0.33]	chr11	933147	5	UTR3	UTR3:EXON_MRNA	AASDHPPT	ENSG00000149313.11	ENST00000278618.9:ENST00000534152.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	30	2	1.62519	1.87056	2.11593	0.0201432	0.00799071	0.0984041	0.0527444
chr6	2948991	2949069	7570811	0	-	0.320513	(0.29,0.33]	chr6	577713	2	CDS	CDS:UTR3:EXON_MRNA	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000380524.5:ENST00000643314.1:ENST00000646722.1:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000647157.1:ENST00000644697.1:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	16	2	1.74619	1.8701699999999999	1.99415	0.0509174	0.0333928	0.181793	0.140128
chr11	62593307	62593401	12409357	0	-	0.574468	(0.53,0.59]	chr11	961036	2	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	7	32	2	1.86855	1.86994	1.87133	0.0308819	0.0189167	0.130016	0.0934721
chr6	30705305	30705404	7659050	0	-	0.535354	(0.53,0.59]	chr6	584223	18	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	13	56	2	1.70039	1.86993	2.03947	0.0102701	0.00610305	0.0633729	0.0439421
chr12	24813316	24813416	13255689	0	-	0.33	(0.29,0.33]	chr12	1038842	34	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.83055	1.869475	1.9084	0.0348758	0.00606296	0.144642	0.0432922
chr3	39095128	39095225	3422804	0	+	0.340206	(0.33,0.36]	chr3	297713	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WDR48	ENSG00000114742.14	ENST00000302313.10:ENST00000420940.6:ENST00000466405.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	21	2	1.82394	1.869275	1.91461	0.0494504	0.0179419	0.18557	0.0939469
chr6	153282286	153282375	8031075	0	-	0.550562	(0.53,0.59]	chr6	614220	1	EXON_PSEUDO	EXON_PSEUDO	RP11-475C16.1	ENSG00000218426.5	ENST00000492974.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	32	145	2	1.63773	1.86927	2.10081	0.00781675	1.54763e-4	0.0519574	0.00257913
chr1	27409862	27409948	908804	0	-	0.639535	(0.59,1]	chr1	95020	3	CDS	CDS:EXON_MRNA:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	13	97	2	1.86224	1.86924	1.87624	0.0194045	0.0049085	0.0944333	0.0366648
chr22	21761549	21761649	18442366	0	-	0.32	(0.29,0.33]	chr22	1572508	20	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	20	51	2	1.69422	1.869175	2.04413	0.0117607	0.00128093	0.0686664	0.0135999
chr1	225790098	225790190	737934	0	+	0.413043	(0.39,0.42]	chr1	74393	9	UTR3	UTR3:EXON_MRNA	SRP9	ENSG00000143742.14	ENST00000304786.12:ENST00000366839.8:ENST00000651761.1	protein_coding	protein_coding	protein_coding	protein_coding	32	105	2	1.77539	1.869145	1.9629	0.00336569	4.4149e-4	0.0288632	0.00594656
chr7	22510615	22510713	8720301	0	-	0.540816	(0.53,0.59]	chr7	665766	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	STEAP1B:EEF1A1P6	ENSG00000105889.16:ENSG00000233476.3	ENST00000439708.1:ENST00000434005.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	53	226	2	1.81058	1.868975	1.92737	0.00101466	2.43177e-4	0.0120547	0.00367926
chr1	219979516	219979615	1510776	0	-	0.363636	(0.36,0.39]	chr1	150982	2	CDS	CDS:EXON_MRNA	EPRS1	ENSG00000136628.18	ENST00000366923.8	protein_coding	protein_coding	protein_coding	protein_coding	22	70	2	1.45434	1.8689	2.28346	0.0221096	2.08949e-4	0.105595	0.0032762
chr6	31815684	31815756	7116659	0	+	0.625	(0.59,1]	chr6	546202	3	UTR5	UTR5:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	12	91	2	1.8325	1.86852	1.90454	0.0116061	0.00890209	0.0680428	0.0567495
chr2	61888507	61888589	2691545	0	-	0.609756	(0.59,1]	chr2	240600	1	UTR5	UTR5:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	13	98	2	1.77772	1.8682949999999998	1.9588699999999999	0.0110472	0.00670615	0.0652709	0.0466206
chr1	182383812	182383911	1401214	0	-	0.474747	(0.455,0.49]	chr1	141690	59	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	62	2	1.62151	1.867905	2.1143	0.0101477	0.00147198	0.0627153	0.0157578
chr16	11851412	11851512	15856826	0	-	0.63	(0.59,1]	chr16	1266837	1	CDS_START	CDS_START:CDS:EXON_MRNA	RSL1D1	ENSG00000171490.13	ENST00000571133.6:ENST00000396503.7:ENST00000573618.5:ENST00000355674.9:ENST00000573029.1:ENST00000573251.5:ENST00000570767.5:ENST00000572090.5:ENST00000574287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	76	2	1.43689	1.867875	2.29886	0.0309097	0.00759671	0.130016	0.0505607
chr5	134197181	134197279	6844106	0	-	0.357143	(0.33,0.36]	chr5	523666	30	UTR3	UTR3:EXON_MRNA:INTRON	CTD-2410N18.5:PPP2CA	ENSG00000272772.1:ENSG00000113575.10	ENST00000519718.1:ENST00000481195.6	protein_coding	protein_coding	protein_coding	protein_coding	23	67	2	1.42169	1.8678649999999999	2.31404	0.0241689	1.73319e-4	0.113671	0.00281533
chr22	21621767	21621866	18303179	0	+	0.373737	(0.36,0.39]	chr22	1554195	2	UTR3	UTR3:EXON_MRNA	UBE2L3	ENSG00000185651.15	ENST00000458578.6:ENST00000545681.2:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	20	2	1.53109	1.867765	2.20444	0.0522406	0.0237257	0.19442	0.109365
chr2	112646562	112646650	2001738	0	+	0.511364	(0.49,0.53]	chr2	190002	1	UTR5	UTR5:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	10	38	2	1.49869	1.867295	2.2359	0.0370308	0.00449268	0.151611	0.0343656
chr4	144110749	144110846	5696544	0	-	0.350515	(0.33,0.36]	chr4	451524	16	UTR3	UTR3:EXON_MRNA	GYPA	ENSG00000170180.22	ENST00000641688.3:ENST00000616983.4:ENST00000360771.8	protein_coding	protein_coding	protein_coding	protein_coding	24	66	2	1.85642	1.867245	1.87807	0.00426528	0.00166927	0.0333884	0.0164993
chr3	13340235	13340298	4046443	0	-	0.603175	(0.59,1]	chr3	339600	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NUP210	ENSG00000132182.12	ENST00000254508.7:ENST00000485755.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	102	2	1.6748	1.8671700000000002	2.05954	0.0108861	0.00660398	0.0662129	0.045496
chr5	70952648	70952746	6024687	0	+	0.44898	(0.42,0.455]	chr5	472101	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMN1	ENSG00000172062.17	ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000510679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	67	2	1.84805	1.8670849999999999	1.88612	0.00540934	0.00201444	0.0397151	0.0197874
chr4	39825289	39825386	5384652	0	-	0.42268	(0.42,0.455]	chr4	431623	26	UTR3	UTR3:EXON_MRNA	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	13	44	2	1.40915	1.866785	2.32442	0.0332782	0.00182252	0.137922	0.0183913
chrX	103685170	103685260	19155421	0	-	0.433333	(0.42,0.455]	chrX	1629358	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5:ENST00000498064.1:ENST00000467755.5:ENST00000488331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	35	2	1.66182	1.86673	2.07164	0.0204671	0.0101168	0.0993047	0.0626311
chr9	76572005	76572105	10314443	0	+	0.26	[0,0.29]	chr9	776558	58	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000648797.1	protein_coding	processed_transcript	protein_coding	processed_transcript	108	264	2	1.07826	1.8665949999999998	2.65493	0.0234099	1.98719e-7	0.110752	1.01095e-5
chr12	6970543	6970622	13188920	0	-	0.683544	(0.59,1]	chr12	1032819	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PHB2	ENSG00000215021.10	ENST00000440277.6:ENST00000678829.1:ENST00000535923.6:ENST00000546111.5:ENST00000676496.1:ENST00000399433.7:ENST00000543465.5:ENST00000677354.1:ENST00000542912.5:ENST00000678983.1:ENST00000678000.1:ENST00000676893.1:ENST00000536316.3:ENST00000545167.5:ENST00000544888.5:ENST00000544134.5:ENST00000546217.1:ENST00000542294.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	54	2	1.58352	1.8665450000000001	2.14957	0.0477456	0.0126053	0.179958	0.0719957
chr11	118590340	118590423	12159620	0	+	0.385542	(0.36,0.39]	chr11	937248	1	CDS	CDS:EXON_MRNA:INTRON	ARCN1	ENSG00000095139.14	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	16	54	2	1.45709	1.866075	2.27506	0.0417071	3.99779e-4	0.165482	0.0054764
chr1	114718612	114718678	1239602	0	-	0.530303	(0.53,0.59]	chr1	121349	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000483407.1:ENST00000534699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	48	2	1.7872	1.8657849999999998	1.94437	0.0143432	0.00904074	0.0783202	0.0573336
chr6	31779210	31779292	7662392	0	-	0.719512	(0.59,1]	chr6	585256	4	CDS	CDS:EXON_MRNA	VARS1	ENSG00000204394.13	ENST00000375663.8:ENST00000463184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	40	2	1.8502	1.8651300000000002	1.88006	0.0554008	0.0334531	0.191173	0.140296
chr10	22536808	22536906	11411118	0	-	0.469388	(0.455,0.49]	chr10	869854	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000474335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	51	2	1.51376	1.864735	2.21571	0.0475178	7.84313e-4	0.17993	0.00927662
chr22	21642861	21642959	18303270	0	+	0.744898	(0.59,1]	chr22	1554229	1	CDS	CDS:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5:ENST00000466935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	128	2	1.62387	1.86437	2.10487	0.0133442	0.00214001	0.0743309	0.0207593
chr3	196931022	196931121	3990871	0	+	0.363636	(0.36,0.39]	chr3	336268	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000448068.5:ENST00000434433.1:ENST00000463245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	18	2	1.66836	1.86401	2.05966	0.0474647	0.0366015	0.17993	0.145024
chr10	84560624	84560715	11167544	0	+	0.362637	(0.36,0.39]	chr10	848475	3	EXON_PSEUDO	EXON_PSEUDO	RPS3AP5	ENSG00000178429.9	ENST00000389400.4	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	16	52	2	1.561	1.8638649999999999	2.16673	0.0292256	7.72869e-4	0.129773	0.00921437
chr6	17624560	17624651	7618966	0	-	0.494505	(0.49,0.53]	chr6	580522	1	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	12	44	2	1.61939	1.86378	2.10817	0.0147974	0.00798134	0.0804787	0.0527008
chr17	7513020	7513114	16105306	0	+	0.638298	(0.59,1]	chr17	1296797	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	67	2	1.76475	1.8637000000000001	1.96265	0.0238491	0.0143469	0.112466	0.078241
chrX	142203149	142203241	19261779	0	-	0.554348	(0.53,0.59]	chrX	1636101	3	CDS	CDS:EXON_MRNA	MAGEC2	ENSG00000046774.10	ENST00000247452.4	protein_coding	protein_coding	protein_coding	protein_coding	9	40	2	1.653	1.8629	2.0728	0.0274587	0.0086901	0.124024	0.0559355
chr12	49763963	49764060	12869282	0	+	0.42268	(0.42,0.455]	chr12	999645	12	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	22	78	2	1.55768	1.862725	2.16777	0.0123956	4.36678e-4	0.070731	0.00588675
chr16	23571189	23571289	15594610	0	+	0.59	(0.53,0.59]	chr16	1236627	7	UTR3	UTR3:EXON_MRNA	UBFD1	ENSG00000103353.16	ENST00000567212.5:ENST00000395878.8	protein_coding	protein_coding	protein_coding	protein_coding	8	36	2	1.85636	1.862455	1.86855	0.0197135	0.0189167	0.0983378	0.0934721
chr18	35337418	35337506	17076691	0	-	0.454545	(0.42,0.455]	chr18	1402844	2	CDS	CDS:UTR3:EXON_MRNA	ZNF24	ENSG00000172466.16	ENST00000399061.3:ENST00000261332.11:ENST00000589881.5	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.7601	1.862035	1.96397	0.0312663	0.0138503	0.132093	0.0759947
chr11	110231770	110231868	12597174	0	-	0.418367	(0.39,0.42]	chr11	976511	25	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5:ENST00000533961.1:ENST00000530131.5:ENST00000530085.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	29	2	1.57493	1.861965	2.149	0.0284977	0.0149155	0.125493	0.0812412
chr6	34873830	34873927	7126506	0	+	0.350515	(0.33,0.36]	chr6	548491	1	EXON_SMALL	EXON_SMALL:UTR3:EXON_MRNA:INTRON	UHRF1BP1:RNY3P15	ENSG00000065060.17:ENSG00000252106.2	ENST00000452449.6:ENST00000192788.6:ENST00000516297.2	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	8	24	2	1.82394	1.861755	1.89957	0.0494504	0.0122916	0.18557	0.0706701
chr22	29282389	29282473	18336546	0	+	0.535714	(0.53,0.59]	chr22	1558173	1	CDS	CDS:EXON_MRNA:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000447973.5:ENST00000436425.5:ENST00000397938.7:ENST00000406548.5:ENST00000437155.6:ENST00000415761.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000333395.10:ENST00000332035.10:ENST00000455726.5:ENST00000479135.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	40	2	1.84013	1.8617	1.88327	0.0298124	0.00973469	0.129773	0.0611259
chr21	14485520	14485617	18163798	0	-	0.268041	[0,0.29]	chr21	1542428	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	29	2	1.83778	1.861605	1.88543	0.0226603	0.00861873	0.10742	0.0555459
chr12	120697340	120697439	13117479	0	+	0.454545	(0.42,0.455]	chr12	1024005	9	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	40	2	1.44978	1.86148	2.27318	0.0463803	0.00211298	0.177188	0.0198008
chr1	156134829	156134929	486118	0	+	0.61	(0.59,1]	chr1	51276	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	LMNA	ENSG00000160789.24	ENST00000368301.6:ENST00000676385.2:ENST00000675939.1:ENST00000675667.1:ENST00000675989.1:ENST00000676283.1:ENST00000674720.1:ENST00000496738.6:ENST00000674518.1:ENST00000676208.1:ENST00000674600.1:ENST00000675874.1:ENST00000676434.1:ENST00000684195.1:ENST00000683032.1:ENST00000682650.1:ENST00000361308.9:ENST00000368300.9:ENST00000675881.1:ENST00000675455.1:ENST00000677389.1:ENST00000368299.7:ENST00000448611.6:ENST00000515459.5:ENST00000675431.1:ENST00000368297.5:ENST00000504687.6:ENST00000473598.6:ENST00000515824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	106	2	1.79051	1.8611900000000001	1.93187	0.0396851	0.00252869	0.161349	0.0227138
chr16	17932719	17932811	15572214	0	+	0.445652	(0.42,0.455]	chr16	1233522	1	EXON_PSEUDO	EXON_PSEUDO	RPL7P47	ENSG00000228071.4	ENST00000497299.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	41	2	1.58516	1.86117	2.13718	0.0389398	0.00257517	0.158547	0.0229531
chr12	76046437	76046536	13423836	0	-	0.30303	(0.29,0.33]	chr12	1056597	100	UTR3	UTR3:EXON_MRNA	NAP1L1	ENSG00000187109.15	ENST00000618691.5	protein_coding	protein_coding	protein_coding	protein_coding	38	88	2	1.46012	1.8611550000000001	2.26219	0.00618279	2.08596e-4	0.0440127	0.00353108
chr2	108684884	108684982	1982457	0	+	0.316327	(0.29,0.33]	chr2	188213	10	UTR3	UTR3:EXON_MRNA	LIMS1	ENSG00000169756.16	ENST00000544547.5:ENST00000393310.5	protein_coding	protein_coding	protein_coding	protein_coding	23	64	2	1.51736	1.861135	2.20491	0.02428	2.2969e-4	0.114157	0.00352524
chr12	6770697	6770782	12713985	0	+	0.576471	(0.53,0.59]	chr12	986785	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000538057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	47	203	2	1.34812	1.86105	2.37398	0.00977593	2.11887e-5	0.0612493	5.07299e-4
chr7	16706349	16706436	8149196	0	+	0.402299	(0.39,0.42]	chr7	622179	4	UTR3	UTR3:EXON_MRNA	BZW2	ENSG00000136261.15	ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000452975.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	49	2	1.8416	1.861035	1.88047	0.0102027	0.00442246	0.062872	0.0339842
chr1	32174176	32174275	127050	0	+	0.515152	(0.49,0.53]	chr1	15636	34	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	7	28	2	1.78308	1.8610250000000002	1.93897	0.0425234	0.0151118	0.167547	0.0820541
chr7	7243627	7243727	8117075	0	+	0.31	(0.29,0.33]	chr7	620903	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	C1GALT1	ENSG00000106392.11	ENST00000436587.7:ENST00000223122.4	protein_coding	protein_coding	protein_coding	protein_coding	7	18	2	1.83055	1.86099	1.89143	0.0348758	0.0332921	0.144642	0.137922
chr5	177592214	177592314	6407858	0	+	0.72	(0.59,1]	chr5	498313	1	CDS_START	CDS_START:CDS:EXON_MRNA	TMED9	ENSG00000184840.12	ENST00000332598.7:ENST00000505521.1:ENST00000507723.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	128	2	1.51095	1.8609399999999998	2.21093	0.021219	0.00118333	0.102061	0.0127472
chr1	31907586	31907684	921176	0	-	0.367347	(0.36,0.39]	chr1	96904	13	UTR3	UTR3:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	24	2	1.53109	1.8605450000000001	2.19	0.0522406	0.0111937	0.19442	0.0665375
chr3	101594084	101594179	3638114	0	+	0.368421	(0.36,0.39]	chr3	311944	15	UTR3	UTR3:EXON_MRNA	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000460231.5:ENST00000469941.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	75	2	1.77073	1.8602249999999998	1.94972	0.00532822	9.39305e-4	0.0405598	0.0106229
chr5	10434472	10434571	5875542	0	+	0.555556	(0.53,0.59]	chr5	462061	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000606497.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	109	2	1.67289	1.860135	2.04738	0.00662495	5.27385e-4	0.0456243	0.00680028
chr3	177025000	177025099	4593477	0	-	0.323232	(0.29,0.33]	chr3	379622	58	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	43	2	1.42007	1.860075	2.30008	0.0347791	7.84294e-4	0.144346	0.00927662
chr1	77965149	77965231	1112848	0	-	0.5	(0.49,0.53]	chr1	111906	2	CDS	CDS:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5:ENST00000421641.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	24	2	1.81659	1.860045	1.9035	0.0376859	0.0295204	0.147713	0.129773
chr7	102474456	102474535	8954819	0	-	0.506329	(0.49,0.53]	chr7	685032	3	CDS	CDS:EXON_MRNA	POLR2J	ENSG00000005075.15	ENST00000292614.9:ENST00000393794.4	protein_coding	protein_coding	protein_coding	protein_coding	6	24	2	1.81659	1.860045	1.9035	0.0376859	0.0295204	0.147713	0.129773
chr9	135955354	135955415	10887671	0	-	0.409836	(0.39,0.42]	chr9	826869	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000478485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	38	2	1.44483	1.85993	2.27503	0.0357586	0.0025739	0.144114	0.0235767
chr1	228098612	228098712	744039	0	+	0.63	(0.59,1]	chr1	75099	7	UTR3	UTR3:EXON_MRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding	27	199	2	1.80971	1.85943	1.90915	0.00478799	0.00156213	0.0369525	0.0156889
chr8	143586745	143586845	10145179	0	-	0.47	(0.455,0.49]	chr8	762514	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1D	ENSG00000104529.18	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000618139.3:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000526838.5:ENST00000532741.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000530445.6:ENST00000524397.5:ENST00000528382.1:ENST00000526786.5:ENST00000530616.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000532543.1:ENST00000525223.1:ENST00000531931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	59	2	1.17415	1.85926	2.54437	0.0472077	2.83607e-4	0.172604	0.00454138
chr15	64365720	64365815	15341391	0	-	0.284211	[0,0.29]	chr15	1211044	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTD-2116N17.1:PCLAF	ENSG00000259316.12:ENSG00000166803.14	ENST00000634251.1:ENST00000634847.3:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2:ENST00000300035.9:ENST00000380258.6:ENST00000559519.5:ENST00000558008.3:ENST00000558043.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	21	51	2	1.73805	1.85885	1.97965	0.0136916	0.00122421	0.0760883	0.0130695
chr9	112222464	112222563	10802907	0	-	0.424242	(0.42,0.455]	chr9	818409	49	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6	protein_coding	protein_coding	protein_coding	protein_coding	21	76	2	1.39068	1.8587150000000001	2.32675	0.0249398	2.06458e-4	0.116361	0.00323831
chr7	107161035	107161132	8455229	0	+	0.278351	[0,0.29]	chr7	645853	16	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	17	40	2	1.63351	1.8586749999999999	2.08384	0.0208248	0.00188502	0.100465	0.0181335
chr17	57679709	57679809	16287049	0	+	0.36	(0.33,0.36]	chr17	1320878	2	UTR3	UTR3:EXON_MRNA	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000675379.1:ENST00000674522.1	protein_coding	protein_coding	protein_coding	protein_coding	10	28	2	1.81756	1.858565	1.89957	0.0223533	0.0122916	0.106046	0.0706701
chr6	32976561	32976642	7120839	0	+	0.518519	(0.49,0.53]	chr6	547268	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2:ENST00000606059.1:ENST00000481259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	36	2	1.58979	1.8583150000000002	2.12684	0.0211872	0.0134683	0.101914	0.0744999
chr16	28844007	28844101	15907767	0	-	0.648936	(0.59,1]	chr16	1273890	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	TUFM:MIR4721	ENSG00000178952.11:ENSG00000283845.1	ENST00000313511.8:ENST00000569217.1:ENST00000577590.1:ENST00000565012.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	11	75	2	1.33419	1.858145	2.3821	0.0433905	0.00554753	0.162376	0.0417049
chr1	225402922	225403017	1528064	0	-	0.273684	[0,0.29]	chr1	152775	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	23	2	1.65198	1.85814	2.0643	0.0369328	0.0108932	0.151225	0.066243
chr2	173367759	173367854	2218762	0	+	0.378947	(0.36,0.39]	chr2	202933	2	UTR3	UTR3:EXON_MRNA	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	26	2	1.85489	1.858035	1.86118	0.0350721	0.0121414	0.141601	0.0699297
chr6	37170575	37170657	7136249	0	+	0.658537	(0.59,1]	chr6	549927	1	CDS_START	CDS_START:CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	34	228	2	1.34636	1.857345	2.36833	0.0143612	3.54088e-4	0.0783177	0.00537769
chr9	133350661	133350727	10503300	0	+	0.575758	(0.53,0.59]	chr9	794239	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPL7A	ENSG00000148303.17	ENST00000323345.11:ENST00000463740.5:ENST00000496554.5:ENST00000468019.5:ENST00000315731.4:ENST00000489392.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	144	2	1.80834	1.8564850000000002	1.90463	0.00187152	6.82654e-4	0.0187325	0.00835581
chr1	7970893	7970963	30596	0	+	0.557143	(0.53,0.59]	chr1	3602	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PARK7	ENSG00000116288.13	ENST00000493373.5:ENST00000460192.5:ENST00000493678.5:ENST00000377493.9:ENST00000338639.10:ENST00000465354.5:ENST00000377491.5:ENST00000377488.5:ENST00000497113.1:ENST00000469225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	32	2	1.76849	1.85643	1.94437	0.0420665	0.0143432	0.158792	0.0783202
chrX	154777323	154777415	18918818	0	+	0.48913	(0.455,0.49]	chrX	1612327	6	UTR3	UTR3:EXON_MRNA	DKC1	ENSG00000130826.18	ENST00000620277.4:ENST00000369550.10	protein_coding	protein_coding	protein_coding	protein_coding	12	41	2	1.62123	1.85623	2.09123	0.0148713	0.00905243	0.0808715	0.0574173
chr15	84669942	84670005	15420853	0	-	0.444444	(0.42,0.455]	chr15	1219607	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEC11A	ENSG00000140612.14	ENST00000559729.5:ENST00000268220.12:ENST00000560266.5:ENST00000558134.5:ENST00000559376.1:ENST00000558217.5:ENST00000558924.1:ENST00000455959.7:ENST00000560409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	54	2	1.67108	1.85618	2.04128	0.00699169	0.00678308	0.0475909	0.0468196
chr3	150572052	150572147	3807845	0	+	0.389474	(0.36,0.39]	chr3	325029	2	CDS	CDS:UTR3:EXON_MRNA	EIF2A	ENSG00000144895.12	ENST00000487799.5:ENST00000460851.6:ENST00000406576.7:ENST00000273435.9:ENST00000462221.5:ENST00000477551.5:ENST00000465535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	42	2	1.69095	1.856065	2.02118	0.0251625	0.00635425	0.117055	0.0449736
chr12	121335627	121335723	13585086	0	-	0.40625	(0.39,0.42]	chr12	1069609	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	ANAPC5	ENSG00000089053.13	ENST00000261819.8:ENST00000541887.5:ENST00000534976.5:ENST00000441917.6:ENST00000539079.5:ENST00000544314.5:ENST00000545218.5:ENST00000535472.5:ENST00000538223.1:ENST00000539612.5:ENST00000541652.5:ENST00000544442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	32	2	1.60776	1.8560050000000001	2.10425	0.0291807	0.00810106	0.129773	0.0528637
chr8	47862456	47862541	9816408	0	-	0.458824	(0.455,0.49]	chr8	742698	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000546304.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	40	2	1.30626	1.85567	2.40508	0.0476147	0.0022198	0.174033	0.0211918
chr2	84425508	84425603	2768762	0	-	0.515789	(0.49,0.53]	chr2	245488	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SUCLG1	ENSG00000163541.12	ENST00000393868.7:ENST00000484365.1:ENST00000651342.1:ENST00000491123.5:ENST00000487809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	24	2	1.78308	1.855335	1.92759	0.0425234	0.0267071	0.167547	0.118504
chr16	51647044	51647132	15663196	0	+	0.295455	(0.29,0.33]	chr16	1244826	4	EXON_LNCRNA	EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000562726.1	protein_coding	processed_transcript	protein_coding	processed_transcript	36	102	2	1.33188	1.8552	2.37852	0.0242295	2.10431e-5	0.113953	5.06044e-4
chr12	56043427	56043493	12897650	0	+	0.590909	(0.59,1]	chr12	1003979	2	CDS	CDS:EXON_MRNA	RPS26	ENSG00000197728.11	ENST00000356464.10:ENST00000552361.1:ENST00000646449.2:ENST00000548590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	98	2	1.58771	1.855185	2.12266	0.0217013	0.00351888	0.103258	0.0298102
chr16	89560866	89560959	15810078	0	+	0.806452	(0.59,1]	chr16	1258667	3	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	345	2	1.31865	1.85515	2.39165	0.0176033	5.82217e-5	0.0918323	0.00117014
chr11	62516462	62516555	12408596	0	-	0.354839	(0.33,0.36]	chr11	960899	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AHNAK	ENSG00000124942.14	ENST00000530124.5:ENST00000257247.11:ENST00000525875.1:ENST00000533365.5:ENST00000378024.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	31	2	1.58192	1.8551350000000002	2.12835	0.0372891	0.00459785	0.152293	0.0351308
chr12	54282799	54282897	12891449	0	+	0.469388	(0.455,0.49]	chr12	1002929	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000679273.1:ENST00000678448.1:ENST00000677636.1:ENST00000677645.1:ENST00000677291.1:ENST00000678876.1:ENST00000677945.1:ENST00000678934.1:ENST00000678597.1:ENST00000678873.1:ENST00000678347.1:ENST00000677778.1:ENST00000677191.1:ENST00000678456.1:ENST00000676572.1:ENST00000679344.1:ENST00000678212.1:ENST00000677224.1:ENST00000677279.1:ENST00000678513.1:ENST00000676707.1:ENST00000679063.1:ENST00000678279.1:ENST00000677539.1:ENST00000679319.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	86	296	2	1.69902	1.855125	2.01123	7.74741e-4	6.20103e-5	0.00967029	0.00123378
chr12	53412025	53412124	12886188	0	+	0.434343	(0.42,0.455]	chr12	1002329	9	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.67452	1.85492	2.03532	0.040947	0.0264395	0.163285	0.117445
chr11	118602566	118602660	12159754	0	+	0.425532	(0.42,0.455]	chr11	937279	10	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	16	55	2	1.74805	1.85446	1.96087	0.00983972	0.00465159	0.0615953	0.0355087
chr10	68742436	68742502	11091394	0	+	0.484848	(0.455,0.49]	chr10	842972	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000538031.5:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	24	2	1.43393	1.854425	2.27492	0.0573788	0.0193827	0.196772	0.0943643
chr1	113975294	113975393	418228	0	+	0.424242	(0.42,0.455]	chr1	41199	19	UTR3	UTR3:EXON_MRNA	HIPK1	ENSG00000163349.22	ENST00000426820.7:ENST00000626993.2:ENST00000369558.5:ENST00000340480.8:ENST00000361587.3	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.58956	1.853705	2.11785	0.0485703	0.0154862	0.175495	0.0836691
chrX	154790982	154791068	19279935	0	-	0.488372	(0.455,0.49]	chrX	1638765	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	94	2	1.50545	1.8535949999999999	2.20174	0.017604	1.53501e-4	0.0918323	0.00255833
chr6	27139308	27139408	7104156	0	+	0.63	(0.59,1]	chr6	543287	1	CDS_START	CDS_START:CDS:EXON_MRNA	H4C9	ENSG00000276180.1	ENST00000615353.1	protein_coding	protein_coding	protein_coding	protein_coding	10	77	2	1.61635	1.8535650000000001	2.09078	0.0315401	0.00582429	0.131907	0.0427941
chr11	62572583	62572662	12409146	0	-	0.56962	(0.53,0.59]	chr11	960977	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EEF1G:RP11-864I4.1	ENSG00000254772.10:ENSG00000255508.7	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000524420.5:ENST00000532986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	137	655	2	1.28726	1.853395	2.41953	0.00706344	1.49037e-6	0.0478377	5.60789e-5
chr2	174248525	174248599	3022061	0	-	0.743243	(0.59,1]	chr2	267484	2	UTR5	UTR5:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9	protein_coding	protein_coding	protein_coding	protein_coding	6	45	2	1.66744	1.8533250000000001	2.03921	0.0371471	0.0369183	0.151849	0.145208
chr1	220007201	220007269	1511071	0	-	0.352941	(0.33,0.36]	chr1	151053	1	CDS	CDS:EXON_MRNA:INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000464052.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	28	85	2	1.54063	1.8532350000000002	2.16584	0.0169653	1.42464e-4	0.0892594	0.00240228
chr21	8438234	8438333	18041926	0	+	0.545455	(0.53,0.59]	chr21	1530900	52	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	6883	28135	2	1.62907	1.85321	2.07735	3.38458e-4	9.85597e-6	0.00477523	2.98744e-4
chr11	34090178	34090233	11905385	0	+	0.490909	(0.49,0.53]	chr11	909555	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000528856.5:ENST00000389645.7:ENST00000532820.5:ENST00000530820.5:ENST00000529307.1:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	62	2	1.47513	1.8531900000000001	2.23125	0.0265702	7.11284e-4	0.12016400000000001	0.00856
chr1	32172584	32172684	127034	0	+	0.44	(0.42,0.455]	chr1	15636	18	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	6	22	2	1.84101	1.85307	1.86513	0.0357107	0.0352234	0.147298	0.142054
chr11	46798082	46798172	12384067	0	-	0.444444	(0.42,0.455]	chr11	956170	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000532321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	1.84101	1.85307	1.86513	0.0357107	0.0352234	0.147298	0.142054
chr19	811576	811670	17189590	0	+	0.393617	(0.39,0.42]	chr19	1411055	9	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	56	166	2	1.35844	1.853005	2.34757	0.00683209	2.43675e-5	0.0466658	5.71444e-4
chr5	171391304	171391358	6384222	0	+	0.5	(0.49,0.53]	chr5	495799	1	CDS	CDS:UTR5:EXON_MRNA	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000521710.2:ENST00000677600.1:ENST00000677741.1:ENST00000523622.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	91	2	1.50743	1.852945	2.19846	0.00743221	6.28893e-4	0.0492519	0.00834341
chr16	30070212	30070280	15628439	0	+	0.691176	(0.59,1]	chr16	1239799	1	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000338110.11:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000642816.3:ENST00000643777.4:ENST00000569798.5:ENST00000395240.7:ENST00000566130.1:ENST00000565355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	114	881	2	1.48477	1.85248	2.22019	0.00526524	5.07387e-5	0.0400892	0.00104122
chr5	131392990	131393090	6221760	0	+	0.35	(0.33,0.36]	chr5	484085	20	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CDC42SE2	ENSG00000158985.14	ENST00000395246.5:ENST00000505065.2:ENST00000503291.5:ENST00000360515.7:ENST00000502582.1:ENST00000506929.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	20	2	1.62754	1.8524500000000002	2.07736	0.0442037	0.0331893	0.172163	0.137855
chr7	141745495	141745584	8575615	0	+	0.359551	(0.33,0.36]	chr7	654304	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SSBP1	ENSG00000106028.11	ENST00000612337.4:ENST00000265304.11:ENST00000498107.5:ENST00000489378.5:ENST00000469123.5:ENST00000467681.5:ENST00000465582.5:ENST00000463093.5:ENST00000465167.1:ENST00000484178.5:ENST00000481508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	61	2	1.6843	1.85241	2.02052	0.00431869	0.00260369	0.0335131	0.0238297
chr12	6923398	6923498	12715502	0	+	0.5	(0.49,0.53]	chr12	987278	7	UTR3	UTR3:EXON_MRNA	ENO2	ENSG00000111674.9	ENST00000541477.5:ENST00000229277.6:ENST00000545045.6:ENST00000535366.5	protein_coding	protein_coding	protein_coding	protein_coding	9	35	2	1.46766	1.85178	2.2359	0.0523669	0.00449268	0.194793	0.0343656
chr9	75181519	75181570	10694337	0	-	0.372549	(0.36,0.39]	chr9	809396	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200041.1	ENST00000363171.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	140	385	2	1.5248	1.851755	2.17871	0.00125066	8.18082e-6	0.0132951	2.55343e-4
chr5	179728743	179728843	6414461	0	+	0.4	(0.39,0.42]	chr5	499211	2	UTR3	UTR3:EXON_MRNA:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000509563.2:ENST00000681342.1:ENST00000503303.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	89	2	1.83377	1.851635	1.8695	0.00289514	0.00124725	0.0257874	0.0132596
chr17	49054272	49054371	16256689	0	+	0.393939	(0.39,0.42]	chr17	1317683	50	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	10	34	2	1.83206	1.8516249999999999	1.87119	0.0373134	0.00778482	0.152293	0.0509384
chr5	179729842	179729942	6414472	0	+	0.34	(0.33,0.36]	chr5	499211	13	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	158	2	1.46653	1.8511699999999998	2.23581	0.00774051	2.12062e-5	0.0514982	5.07604e-4
chr17	44323477	44323562	16557840	0	-	0.635294	(0.59,1]	chr17	1359366	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	SLC25A39	ENSG00000013306.16	ENST00000225308.12:ENST00000591006.5:ENST00000377095.10:ENST00000590194.5:ENST00000586016.5:ENST00000537904.6:ENST00000588315.5:ENST00000585695.5:ENST00000588049.5:ENST00000585636.5:ENST00000586633.5:ENST00000592857.5:ENST00000591151.1:ENST00000585523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	46	2	1.73729	1.850725	1.96416	0.044741	0.0303312	0.166115	0.129874
chr5	1333132	1333226	6423470	0	-	0.521277	(0.49,0.53]	chr5	500716	9	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	65	2	1.69779	1.850315	2.00284	0.00603447	0.00342076	0.0435881	0.0283456
chr11	45969814	45969904	12379172	0	-	0.522222	(0.49,0.53]	chr11	955649	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PHF21A	ENSG00000135365.16	ENST00000676320.1:ENST00000527401.5:ENST00000323180.10:ENST00000418153.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	23	2	1.56467	1.84984	2.13501	0.051923	0.0287874	0.18423900000000001	0.128869
chr19	45687552	45687617	17590095	0	-	0.630769	(0.59,1]	chr19	1480426	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SNRPD2	ENSG00000125743.11	ENST00000342669.8:ENST00000585392.2:ENST00000587367.5:ENST00000588301.5:ENST00000391932.7:ENST00000588599.5:ENST00000590212.1	protein_coding	protein_coding	protein_coding	protein_coding	12	90	2	1.8325	1.849615	1.86673	0.0133561	0.00890209	0.0743429	0.0567495
chr12	56639725	56639807	13352123	0	-	0.378049	(0.36,0.39]	chr12	1051741	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5F1B	ENSG00000110955.9	ENST00000262030.8:ENST00000548474.2:ENST00000547808.5:ENST00000547250.5:ENST00000551020.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	37	2	1.55549	1.8495949999999999	2.1437	0.0340515	0.0119339	0.141465	0.0698565
chrX	1392009	1392061	18925628	0	-	0.769231	(0.59,1]	chrX	1612971	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	159	2	1.51424	1.849295	2.18435	0.0184332	7.00107e-4	0.0931283	0.00847048
chr7	116917767	116917867	8478165	0	+	0.41	(0.39,0.42]	chr7	647537	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CAPZA2	ENSG00000198898.14	ENST00000361183.8:ENST00000426421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	44	2	1.60776	1.84912	2.09048	0.0291807	0.00224175	0.129773	0.0207345
chr21	8210987	8211086	18041127	0	+	0.535354	(0.53,0.59]	chr21	1530812	17	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	7628	31027	2	1.58191	1.8490799999999998	2.11625	4.73128e-4	7.05827e-6	0.00625249	2.27548e-4
chr1	45551067	45551155	174612	0	+	0.568182	(0.53,0.59]	chr1	22628	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	1.65775	1.849075	2.0404	0.0573191	0.0362529	0.196623	0.148525
chr1	154270574	154270667	480160	0	+	0.569892	(0.53,0.59]	chr1	49745	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	UBAP2L	ENSG00000143569.19	ENST00000271877.11:ENST00000428931.6:ENST00000361546.6:ENST00000433615.5:ENST00000493867.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	23	2	1.65775	1.849075	2.0404	0.0573191	0.0362529	0.196623	0.148525
chr3	9476091	9476189	3298371	0	+	0.55102	(0.53,0.59]	chr3	289609	1	UTR3	UTR3:EXON_MRNA:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	23	2	1.65775	1.849075	2.0404	0.0573191	0.0362529	0.196623	0.148525
chr1	151051559	151051657	1291620	0	-	0.489796	(0.455,0.49]	chr1	128778	7	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	8	28	2	1.43393	1.848585	2.26324	0.0573788	0.00868189	0.196772	0.0558093
chr7	2366382	2366448	8096203	0	+	0.484848	(0.455,0.49]	chr7	618880	2	CDS	CDS:EXON_MRNA	EIF3B	ENSG00000106263.18	ENST00000431643.5:ENST00000360876.9:ENST00000397011.2:ENST00000463229.2:ENST00000468250.1:ENST00000463026.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	28	2	1.43393	1.848585	2.26324	0.0573788	0.00868189	0.196772	0.0558093
chr12	52898678	52898751	13336926	0	-	0.616438	(0.59,1]	chr12	1048610	1	CDS	CDS:EXON_MRNA	KRT8	ENSG00000170421.12	ENST00000552551.5:ENST00000293308.11:ENST00000546583.5:ENST00000550170.5:ENST00000546897.5:ENST00000552150.5:ENST00000547031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	74	2	1.54039	1.848345	2.1563	0.031435	0.00708052	0.131481	0.0478776
chr1	65257137	65257236	249869	0	+	0.424242	(0.42,0.455]	chr1	28627	21	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	34	2	1.71996	1.848335	1.97671	0.0542346	0.00554508	0.199653	0.0405292
chr4	39825095	39825192	5384650	0	-	0.350515	(0.33,0.36]	chr4	431623	24	UTR3	UTR3:EXON_MRNA	PDS5A	ENSG00000121892.15	ENST00000303538.13	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.68466	1.84788	2.0111	0.0351252	0.0124964	0.145575	0.071421
chr1	206186978	206187078	1463886	0	-	0.46	(0.455,0.49]	chr1	147892	9	UTR3	UTR3:EXON_MRNA	FAM72A	ENSG00000196550.11	ENST00000367128.8:ENST00000341209.9	protein_coding	protein_coding	protein_coding	protein_coding	11	39	2	1.56466	1.847725	2.13079	0.0309562	0.00422749	0.131262	0.0329189
chr9	35725594	35725694	10639799	0	-	0.51	(0.49,0.53]	chr9	805181	1	CDS_START	CDS_START:CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	31	2	1.75643	1.8477000000000001	1.93897	0.0293825	0.0151118	0.129773	0.0820541
chr21	44806111	44806210	18277271	0	-	0.353535	(0.33,0.36]	chr21	1550219	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	35	2	1.82006	1.84765	1.87524	0.0323353	0.00509273	0.135977	0.0376359
chr7	130133324	130133423	8529058	0	+	0.363636	(0.36,0.39]	chr7	651128	27	UTR3	UTR3:EXON_MRNA	KLHDC10	ENSG00000128607.14	ENST00000335420.10	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.36801	1.847395	2.32678	0.0471244	0.0193538	0.172305	0.0943643
chr1	243126063	243126159	1585031	0	-	0.395833	(0.39,0.42]	chr1	157911	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP170	ENSG00000143702.16	ENST00000366544.5:ENST00000366543.5:ENST00000366542.6:ENST00000468254.5:ENST00000481987.5:ENST00000336415.8:ENST00000466495.1:ENST00000476661.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	29	2	1.75252	1.84739	1.94226	0.0297286	0.01151	0.130016	0.0679423
chr21	8210195	8210294	18041119	0	+	0.474747	(0.455,0.49]	chr21	1530812	9	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	12530	41234	2	1.80353	1.846765	1.89	6.75346e-5	2.6979600000000002e-05	0.0013146	6.88744e-4
chr4	77047250	77047347	5479162	0	-	0.371134	(0.36,0.39]	chr4	439254	2	UTR3	UTR3:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9	protein_coding	protein_coding	protein_coding	protein_coding	58	169	2	1.75061	1.846695	1.94278	0.00111444	1.84896e-4	0.0127835	0.00296795
chr7	76328683	76328782	8863402	0	-	0.373737	(0.36,0.39]	chr7	677476	20	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	26	75	2	1.83061	1.846595	1.86258	0.00273851	0.00189515	0.0246786	0.0182265
chr5	79170284	79170335	6661741	0	-	0.431373	(0.42,0.455]	chr5	514346	2	EXON_SMALL	EXON_SMALL:INTRON	DMGDH:RNY3P1	ENSG00000132837.15:ENSG00000201955.1	ENST00000520388.5:ENST00000518707.1:ENST00000365085.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:processed_transcript	30	98	2	1.80392	1.84635	1.88878	0.00293799	8.19277e-4	0.0251691	0.0101824
chrX	53378117	53378216	19076603	0	-	0.292929	(0.29,0.33]	chrX	1622486	41	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	12	28	2	1.50286	1.845995	2.18913	0.035536	0.00629431	0.147135	0.044701
chr1	44740912	44741007	173779	0	+	0.463158	(0.455,0.49]	chr1	22306	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	KIF2C	ENSG00000142945.13	ENST00000452259.5:ENST00000493027.5:ENST00000372224.9:ENST00000455186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	22	2	1.72305	1.8458999999999999	1.96875	0.0480352	0.0324537	0.180552	0.134899
chr5	138393188	138393280	6244212	0	+	0.48913	(0.455,0.49]	chr5	486516	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	22	2	1.72305	1.8458999999999999	1.96875	0.0480352	0.0324537	0.180552	0.134899
chr10	46003402	46003487	11026553	0	+	0.388235	(0.36,0.39]	chr10	839311	2	UTR3	UTR3:EXON_MRNA	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.82984	1.84551	1.86118	0.0234753	0.0121414	0.108434	0.0699297
chr12	53382960	53383054	12885894	0	+	0.531915	(0.53,0.59]	chr12	1002309	10	CDS	CDS:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	7	31	2	1.78129	1.84541	1.90953	0.0517711	0.0173127	0.193577	0.0914071
chr8	23566454	23566544	9230658	0	+	0.566667	(0.53,0.59]	chr8	706548	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	100	2	1.79639	1.84534	1.89429	0.00561556	0.00159888	0.0421753	0.0159605
chr22	16649522	16649622	18286214	0	+	0.51	(0.49,0.53]	chr22	1551703	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPTEP1	ENSG00000100181.22	ENST00000558085.6:ENST00000426585.5:ENST00000383140.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	5	20	2	1.78308	1.844965	1.90685	0.0534351	0.0425234	0.184995	0.167547
chr16	69703775	69703874	15725397	0	+	0.353535	(0.33,0.36]	chr16	1252140	76	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NFAT5:RP11-311C24.1	ENSG00000102908.22:ENSG00000260772.1	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7:ENST00000561622.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	12	31	2	1.35578	1.8445	2.33322	0.042418	0.00451613	0.160064	0.0350603
chr6	26138342	26138439	7101274	0	+	0.381443	(0.36,0.39]	chr6	542801	4	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	57	2	1.45709	1.84445	2.23181	0.0417071	3.85903e-4	0.165482	0.00532469
chr1	25901586	25901682	905283	0	-	0.46875	(0.455,0.49]	chr1	94151	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	STMN1	ENSG00000117632.23	ENST00000426559.6:ENST00000455785.7:ENST00000399728.5:ENST00000465604.1:ENST00000357865.6:ENST00000374291.5:ENST00000485226.1:ENST00000446334.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	45	163	2	1.47148	1.8440499999999997	2.21662	0.00730142	3.997e-5	0.0490627	8.60154e-4
chr5	56504809	56504896	6587865	0	-	0.425287	(0.42,0.455]	chr5	510045	3	EXON_PSEUDO	EXON_PSEUDO	RPL26P19	ENSG00000226221.1	ENST00000450941.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	46	157	2	1.80349	1.843655	1.88382	0.00155702	3.44894e-4	0.0165415	0.00485877
chr20	36779919	36780019	17958421	0	-	0.53	(0.49,0.53]	chr20	1521662	22	UTR3	UTR3:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	5	20	2	1.69633	1.843385	1.99044	0.0531914	0.0435903	0.184818	0.170594
chrX	72197367	72197426	18736465	0	+	0.525424	(0.49,0.53]	chrX	1599093	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PIN4	ENSG00000102309.15	ENST00000423432.6:ENST00000664196.1:ENST00000218432.10:ENST00000373669.8:ENST00000439980.7:ENST00000652108.2:ENST00000496835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	20	2	1.69633	1.843385	1.99044	0.0531914	0.0435903	0.184818	0.170594
chr17	7513490	7513584	16105311	0	+	0.542553	(0.53,0.59]	chr17	1296797	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	83	2	1.53965	1.8431899999999999	2.14673	0.00762667	0.00239236	0.050335	0.0225356
chr20	47287784	47287879	17993901	0	-	0.484211	(0.455,0.49]	chr20	1525020	1	INTRON	INTRON	ZMYND8	ENSG00000101040.19	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000471951.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	36	2	1.43393	1.8431899999999999	2.25245	0.0573788	0.0025291	0.196772	0.0233955
chr11	63758491	63758591	11976853	0	+	0.42	(0.39,0.42]	chr11	918385	2	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	53	2	1.67641	1.842765	2.00912	0.0175063	0.00185432	0.0918323	0.01785
chr7	116904298	116904398	8478020	0	+	0.41	(0.39,0.42]	chr7	647505	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CAPZA2	ENSG00000198898.14	ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1:ENST00000628758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	30	2	1.79377	1.84261	1.89145	0.0299302	0.0119663	0.129773	0.0700178
chr9	128179149	128179238	10863843	0	-	0.595506	(0.59,1]	chr9	823426	6	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CIZ1	ENSG00000148337.21	ENST00000651955.1:ENST00000372938.10:ENST00000372954.5:ENST00000538431.5:ENST00000357558.9:ENST00000393608.5:ENST00000629610.2:ENST00000372948.7:ENST00000277465.8:ENST00000634901.1:ENST00000415526.5:ENST00000476727.6:ENST00000476239.5:ENST00000488559.6:ENST00000467178.5:ENST00000491954.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	84	2	1.68783	1.842495	1.99716	0.035259	0.0042513	0.146063	0.0330983
chr6	113915542	113915642	7339323	0	+	0.42	(0.39,0.42]	chr6	564217	104	INTRON	INTRON	LINC02880	ENSG00000175967.4	ENST00000658538.1:ENST00000314481.3	lncRNA	lncRNA	lncRNA	lncRNA	10	32	2	1.50406	1.842155	2.18025	0.0413581	0.00587938	0.164391	0.0424857
chr15	64684575	64684675	14978119	0	+	0.43	(0.42,0.455]	chr15	1177327	30	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.71996	1.841965	1.96397	0.0542346	0.0138503	0.199653	0.0759947
chr4	151102973	151103026	5165582	0	+	0.509434	(0.49,0.53]	chr4	417321	1	CDS	CDS:UTR3:EXON_MRNA	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	100	2	1.62079	1.8419349999999999	2.06308	0.00653898	4.60852e-4	0.0454205	0.00611551
chr1	235111382	235111479	1560086	0	-	0.350515	(0.33,0.36]	chr1	156012	22	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	56	152	2	1.84009	1.841815	1.84354	0.00114157	3.15669e-4	0.0130176	0.00453326
chr6	26281390	26281488	7647337	0	-	0.428571	(0.42,0.455]	chr6	582588	6	UTR3	UTR3:EXON_MRNA	H4C8	ENSG00000158406.6	ENST00000634956.1:ENST00000634560.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	8	29	2	1.63927	1.84171	2.04415	0.0455517	0.0101476	0.175554	0.0627153
chr2	9584719	9584813	2508161	0	-	0.425532	(0.42,0.455]	chr2	226349	9	UTR3	UTR3:EXON_MRNA	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8	protein_coding	protein_coding	protein_coding	protein_coding	17	47	2	1.07759	1.8413149999999998	2.60504	0.0564945	0.00201537	0.19417	0.0197874
chr12	49020522	49020619	13323157	0	-	0.546392	(0.53,0.59]	chr12	1045401	17	UTR3	UTR3:EXON_MRNA:INTRON	RP11-386G11.12:KMT2D	ENSG00000288710.1:ENSG00000167548.17	ENST00000683988.1:ENST00000526209.2:ENST00000301067.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	55	2	1.35084	1.841215	2.33159	0.0396067	0.00153017	0.161137	0.0155189
chr19	48922898	48922992	17367855	0	+	0.574468	(0.53,0.59]	chr19	1442160	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000485798.5:ENST00000492367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	44	2	1.77634	1.84116	1.90598	0.025972	0.00735883	0.117079	0.0490627
chr8	26412351	26412448	9238674	0	+	0.371134	(0.36,0.39]	chr8	707583	21	UTR3	UTR3:EXON_MRNA:INTRON	BNIP3L	ENSG00000104765.16	ENST00000380629.7:ENST00000523949.5	protein_coding	protein_coding	protein_coding	protein_coding	12	34	2	1.51409	1.84063	2.16717	0.0195432	0.0152504	0.097896	0.0828908
chr10	32011323	32011419	11441769	0	-	0.375	(0.36,0.39]	chr10	872367	25	UTR3	UTR3:EXON_MRNA	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	9	27	2	1.66365	1.8401100000000001	2.01657	0.0345996	0.0118295	0.143631	0.0692539
chr1	182391606	182391706	1401301	0	-	0.78	(0.59,1]	chr1	141715	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000311223.9:ENST00000339526.8:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	96	2	1.66148	1.83983	2.01818	0.017124	0.00523578	0.0899743	0.038667
chr17	82602468	82602565	16384597	0	+	0.56701	(0.53,0.59]	chr17	1332764	11	UTR3	UTR3:EXON_MRNA	FOXK2	ENSG00000141568.21	ENST00000335255.10:ENST00000624186.1	protein_coding	protein_coding	protein_coding	protein_coding:TEC	5	23	2	1.78041	1.839235	1.89806	0.0532477	0.0407112	0.184818	0.163285
chr5	54310479	54310530	6580179	0	-	0.568627	(0.53,0.59]	chr5	509140	1	UTR5	UTR5:EXON_MRNA	ARL15	ENSG00000185305.11	ENST00000504924.6:ENST00000502271.5:ENST00000620747.4:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	23	2	1.78041	1.839235	1.89806	0.0532477	0.0407112	0.184818	0.163285
chr1	26780175	26780271	111014	0	+	0.59375	(0.59,1]	chr1	13354	13	CDS	CDS:UTR3:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000374152.7:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	55	2	1.49936	1.8391250000000001	2.17889	0.0358913	0.025085	0.144634	0.116848
chr8	31173199	31173297	9257305	0	+	0.397959	(0.39,0.42]	chr8	709392	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5:ENST00000651946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	32	2	1.73522	1.83874	1.94226	0.0216784	0.01151	0.103158	0.0679423
chr19	40378251	40378329	17328740	0	+	0.679487	(0.59,1]	chr19	1435589	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PLD3	ENSG00000105223.20	ENST00000409419.5:ENST00000409587.5:ENST00000409735.9:ENST00000356508.9:ENST00000409281.5:ENST00000486134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	97	2	1.67911	1.838135	1.99716	0.0201164	0.0042513	0.0976908	0.0330983
chr1	8860999	8861089	852361	0	-	0.522222	(0.49,0.53]	chr1	85899	1	UTR3	UTR3:EXON_MRNA	ENO1	ENSG00000074800.16	ENST00000234590.10:ENST00000647408.1:ENST00000464920.2:ENST00000646370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	76	2	1.46035	1.83805	2.21575	0.0203064	4.1927e-4	0.098223	0.00569498
chrM	4847	4942	19377188	0	+	0.463158	(0.455,0.49]	chrM	1649802	5	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	128	415	2	1.76374	1.8378700000000001	1.912	2.31795e-4	1.11822e-4	0.00384191	0.00198942
chrM	11350	11448	19377254	0	+	0.44898	(0.42,0.455]	chrM	1649826	6	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	207	664	2	1.74876	1.8378450000000002	1.92693	2.36297e-4	4.23698e-5	0.0035792	9.93368e-4
chr12	112028256	112028354	13542716	0	-	0.285714	[0,0.29]	chr12	1065562	17	UTR3	UTR3:EXON_MRNA	NAA25	ENSG00000111300.10	ENST00000261745.9:ENST00000552527.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	21	2	1.67519	1.8376450000000002	2.0001	0.0299989	0.0227161	0.130016	0.107633
chr5	1802320	1802374	5852670	0	+	0.388889	(0.36,0.39]	chr5	460309	1	CDS	CDS:EXON_MRNA	NDUFS6	ENSG00000145494.12	ENST00000274137.10:ENST00000469176.1	protein_coding	protein_coding	protein_coding	protein_coding	13	38	2	1.67408	1.837505	2.00093	0.0122872	0.00996106	0.0706588	0.0621728
chr8	56961109	56961208	9836802	0	-	0.383838	(0.36,0.39]	chr8	744432	33	UTR3	UTR3:EXON_MRNA	BPNT2	ENSG00000104331.9	ENST00000262644.9	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	1.74874	1.837485	1.92623	0.0166541	0.0142811	0.0881353	0.0780385
chr1	44819997	44820095	971829	0	-	0.479592	(0.455,0.49]	chr1	102543	1	UTR3	UTR3:EXON_MRNA	PTCH2	ENSG00000117425.14	ENST00000447098.6:ENST00000438067.5	protein_coding	protein_coding	protein_coding	protein_coding	24	77	2	1.65967	1.8373249999999999	2.01498	0.00386266	0.00237108	0.032213	0.0216648
chr7	25123403	25123502	8730812	0	-	0.353535	(0.33,0.36]	chr7	666449	49	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7:ENST00000409409.5:ENST00000409764.5	protein_coding	protein_coding	protein_coding	protein_coding	27	68	2	1.82214	1.8372950000000001	1.85245	0.00336412	0.00173854	0.0280697	0.0179299
chr3	132231732	132231832	4457603	0	-	0.43	(0.42,0.455]	chr3	370292	1911	INTRON	INTRON	CPNE4	ENSG00000196353.12	ENST00000512055.5	protein_coding	protein_coding	protein_coding	protein_coding	9	30	2	1.722	1.8370250000000001	1.95205	0.0248244	0.0179091	0.113644	0.0918323
chr19	1038581	1038678	17190851	0	+	0.546392	(0.53,0.59]	chr19	1411408	8	UTR3	UTR3:EXON_MRNA	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000564572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	71	2	1.61946	1.8367399999999998	2.05402	0.00996716	0.00260318	0.0621728	0.0230216
chr22	21696548	21696647	18303776	0	+	0.565657	(0.53,0.59]	chr22	1554386	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000335025.12:ENST00000498109.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000680094.1:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1:ENST00000446951.1:ENST00000681735.1:ENST00000679564.1:ENST00000680113.1:ENST00000680573.1:ENST00000462188.1:ENST00000681027.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	40	2	1.69162	1.836725	1.98183	0.0342431	0.00781631	0.141233	0.0519574
chr19	14092082	14092180	17478347	0	-	0.520408	(0.49,0.53]	chr19	1464173	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PRKACA	ENSG00000072062.15	ENST00000308677.9:ENST00000677951.1:ENST00000677971.1:ENST00000350356.7:ENST00000590853.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	52	2	1.71819	1.83647	1.95475	0.0127186	0.00432074	0.0719798	0.0335176
chr20	17962867	17962946	17916794	0	-	0.468354	(0.455,0.49]	chr20	1516378	3	EXON_SMALL	EXON_SMALL:INTRON	SNX5:OVOL2:SNORD17	ENSG00000089006.17:ENSG00000125850.11:ENSG00000212232.1	ENST00000377768.7:ENST00000490175.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000469704.1:ENST00000486776.5:ENST00000390930.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:processed_transcript	91	313	2	1.50969	1.836455	2.16322	0.00286624	1.2669e-5	0.0246513	3.67172e-4
chr2	24076229	24076326	2555747	0	-	0.556701	(0.53,0.59]	chr2	229446	1	UTR5	UTR5:EXON_MRNA	SF3B6	ENSG00000115128.7	ENST00000233468.5:ENST00000478050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	51	2	1.63267	1.83607	2.03947	0.0170789	0.00610305	0.0902695	0.0439421
chr1	45606481	45606536	175052	0	+	0.490909	(0.49,0.53]	chr1	22724	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	43	2	1.5639	1.8360349999999999	2.10817	0.0185114	0.00798134	0.0948661	0.0527008
chr3	128797961	128798061	3729105	0	+	0.43	(0.42,0.455]	chr3	318625	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1:ENST00000675497.1:ENST00000674589.1:ENST00000464496.5:ENST00000485280.1:ENST00000483906.5:ENST00000676147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	22	2	1.71996	1.836005	1.95205	0.0542346	0.0248244	0.199653	0.113644
chr13	98018484	98018557	13859242	0	+	0.438356	(0.42,0.455]	chr13	1086727	1	CDS	CDS:EXON_MRNA	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	28	2	1.67452	1.8357649999999999	1.99701	0.0264395	0.0235036	0.117445	0.111072
chrX	136875527	136875585	19250732	0	-	0.551724	(0.53,0.59]	chrX	1635455	2	CDS	CDS:UTR3:EXON_MRNA	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	31	2	1.61377	1.8355549999999998	2.05734	0.0436338	0.0167029	0.170594	0.0883198
chr7	5605670	5605769	8112124	0	+	0.666667	(0.59,1]	chr7	620041	3	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	102	2	1.58352	1.834615	2.08571	0.0477456	0.00172608	0.179958	0.0168963
chr11	118602194	118602287	12159750	0	+	0.473118	(0.455,0.49]	chr11	937279	6	UTR3	UTR3:EXON_MRNA	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	46	167	2	1.52708	1.8340800000000002	2.14108	0.00640287	5.62306e-5	0.0450344	0.0011351
chr4	17843325	17843425	4734838	0	+	0.38	(0.36,0.39]	chr4	392915	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NCAPG	ENSG00000109805.10	ENST00000251496.7:ENST00000514176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	32	2	1.66836	1.8339500000000002	1.99954	0.0474647	0.00521298	0.17993	0.0385036
chr1	224386242	224386342	1526401	0	-	0.31	(0.29,0.33]	chr1	152610	12	UTR3	UTR3:EXON_MRNA	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	13	33	2	1.75944	1.83392	1.9084	0.0226161	0.00606296	0.107244	0.0432922
chr1	29112367	29112448	121570	0	+	0.395062	(0.39,0.42]	chr1	14739	1	CDS	CDS:UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000649674.1:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000649992.1:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	29	2	1.65092	1.8338450000000002	2.01677	0.0235818	0.0216584	0.111323	0.103121
chr20	36046009	36046108	17956001	0	-	0.30303	(0.29,0.33]	chr20	1521358	5	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	15	35	2	1.31574	1.833775	2.35181	0.0496396	0.00160522	0.186234	0.0160219
chr7	135929034	135929133	9085571	0	-	0.333333	(0.33,0.36]	chr7	693646	24	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	28	72	2	1.58384	1.833735	2.08363	0.00437684	0.00184842	0.0336411	0.0185736
chr1	632326	632423	492	0	+	0.505155	(0.49,0.53]	chr1	106	14	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	63	224	2	1.25747	1.833335	2.4092	0.0105528	8.97953e-6	0.0637789	2.52482e-4
chr5	154799674	154799759	6314847	0	+	0.458824	(0.455,0.49]	chr5	492457	2	CDS	CDS:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6:ENST00000524248.5:ENST00000523163.5:ENST00000518595.1:ENST00000518742.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	38	2	1.62077	1.8331849999999998	2.0456	0.0239989	0.00663817	0.110225	0.0456262
chr21	8211284	8211383	18041130	0	+	0.575758	(0.53,0.59]	chr21	1530812	20	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	11782	48298	2	1.57807	1.832815	2.08756	4.84034e-4	8.90956e-6	0.00635091	2.75006e-4
chrX	12824031	12824126	18584419	0	+	0.284211	[0,0.29]	chrX	1587262	14	UTR3	UTR3:EXON_MRNA	PRPS2	ENSG00000101911.13	ENST00000380668.10	protein_coding	protein_coding	protein_coding	protein_coding	10	23	2	1.7788	1.832115	1.88543	0.0226603	0.0208453	0.10742	0.100997
chr6	27810665	27810756	7105140	0	+	0.406593	(0.39,0.42]	chr6	543458	3	UTR3	UTR3:EXON_MRNA	H3C10	ENSG00000278828.1	ENST00000369163.3	protein_coding	protein_coding	protein_coding	protein_coding	16	50	2	1.27598	1.8321100000000001	2.38824	0.0454359	6.81913e-4	0.175244	0.00834704
chr18	673287	673384	16717053	0	+	0.28866000000000003	[0,0.29]	chr18	1379309	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000323224.7:ENST00000581920.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	19	2	1.81505	1.8320500000000002	1.84905	0.0409713	0.0241194	0.163285	0.110734
chr6	67888449	67888548	7784145	0	-	0.424242	(0.42,0.455]	chr6	596229	16	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	69	234	2	1.69925	1.8317649999999999	1.96428	0.0011498	1.17289e-4	0.0130643	0.00205876
chr3	186784864	186784961	3958226	0	+	0.350515	(0.33,0.36]	chr3	333850	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000491473.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	18	2	1.68466	1.83154	1.97842	0.0469469	0.0351252	0.171977	0.145575
chr12	110435154	110435217	13537437	0	-	0.460317	(0.455,0.49]	chr12	1064866	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	RP11-478C19.2:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000467622.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	11	38	2	1.69295	1.83122	1.96949	0.018341	0.00919557	0.0945306	0.0582809
chr2	132255181	132255280	2878624	0	-	0.454545	(0.42,0.455]	chr2	257829	20	INTRON	INTRON	ANKRD30BL	ENSG00000163046.16	ENST00000470729.5	protein_coding	processed_transcript	protein_coding	processed_transcript	153	564	2	1.11397	1.830905	2.54784	0.0135256	3.53415e-7	0.0753809	1.644e-5
chr2	135784168	135784267	2083407	0	+	0.313131	(0.29,0.33]	chr2	195479	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	26	2	1.82993	1.8302399999999999	1.83055	0.0348758	0.01179	0.144642	0.0690526
chr6	67886467	67886567	7784125	0	-	0.48	(0.455,0.49]	chr6	596227	1	SS5_PROX	SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	55	177	2	1.42248	1.8302	2.23792	0.00502609	4.31774e-5	0.0371704	0.00100296
chr17	59202626	59202726	16292930	0	+	0.31	(0.29,0.33]	chr17	1321372	11	UTR3	UTR3:EXON_MRNA:INTRON	PRR11:CTD-2510F5.6	ENSG00000068489.13:ENSG00000265303.1	ENST00000262293.9:ENST00000578542.5:ENST00000580177.5:ENST00000614081.1:ENST00000577660.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	18	2	1.66607	1.83011	1.99415	0.0424383	0.0333928	0.160073	0.140128
chr2	133596090	133596167	2075130	0	+	0.519481	(0.49,0.53]	chr2	194812	1	EXON_SMALL	EXON_SMALL	RN7SKP93	ENSG00000200708.1	ENST00000363838.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	44	150	2	1.53032	1.829805	2.12929	0.00320102	2.50842e-4	0.0268289	0.00411224
chr3	14198035	14198116	3319945	0	+	0.530864	(0.53,0.59]	chr3	292181	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	LSM3	ENSG00000170860.4	ENST00000306024.4	protein_coding	protein_coding	protein_coding	protein_coding	12	52	2	1.61684	1.82977	2.0427	0.0233353	0.00395612	0.110406	0.0316979
chr20	49113818	49113915	17999393	0	-	0.319588	(0.29,0.33]	chr20	1525563	6	UTR3	UTR3:EXON_MRNA	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5	protein_coding	protein_coding	protein_coding	protein_coding	18	47	2	1.61533	1.82973	2.04413	0.0237602	0.00128093	0.112145	0.0135999
chr19	3977518	3977610	17430185	0	-	0.695652	(0.59,1]	chr19	1454691	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	40	278	2	1.50089	1.829355	2.15782	0.00695315	5.14489e-4	0.0473262	0.00719248
chr6	8079790	8079889	7589982	0	-	0.30303	(0.29,0.33]	chr6	578979	5	UTR3	UTR3:EXON_MRNA:INTRON	EEF1E1-BLOC1S5:EEF1E1	ENSG00000265818.1:ENSG00000124802.12	ENST00000397456.2:ENST00000429723.6:ENST00000502429.5:ENST00000379715.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	25	2	1.66431	1.82917	1.99403	0.0225076	0.0202925	0.10505	0.098158
chr3	152462983	152463083	3818508	0	+	0.33	(0.29,0.33]	chr3	325707	7	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000478535.1:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	29	2	1.66431	1.8291	1.99389	0.0225076	0.00896841	0.10505	0.0569518
chr16	74305288	74305366	15739424	0	+	0.525641	(0.49,0.53]	chr16	1254004	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PSMD7	ENSG00000103035.11	ENST00000219313.9:ENST00000568717.1:ENST00000567958.5:ENST00000563150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	23	2	1.66773	1.829085	1.99044	0.0435903	0.0381288	0.170594	0.149227
chr10	119042187	119042285	11717255	0	-	0.683673	(0.59,1]	chr10	893775	3	CDS	CDS:EXON_MRNA	EIF3A	ENSG00000107581.13	ENST00000369144.8:ENST00000541549.2	protein_coding	protein_coding	protein_coding	protein_coding	8	54	2	1.41361	1.8287900000000001	2.24397	0.0468414	0.0206682	0.171905	0.0997234
chr20	50082573	50082670	18004133	0	-	0.298969	(0.29,0.33]	chr20	1525944	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3:ENST00000483534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	33	2	1.74949	1.8287900000000001	1.90809	0.0162875	0.00703109	0.0866586	0.0478044
chr2	110670524	110670568	2838263	0	-	0.477273	(0.455,0.49]	chr2	253380	1	CDS	CDS:EXON_MRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000466333.5:ENST00000666956.1:ENST00000465029.5:ENST00000447014.5:ENST00000420328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	29	2	1.79605	1.8287849999999999	1.86152	0.0427708	0.0133542	0.168094	0.0743429
chr12	108646205	108646304	13530485	0	-	0.575758	(0.53,0.59]	chr12	1063929	12	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	9	39	2	1.653	1.8286	2.0042	0.0274587	0.0113999	0.124024	0.0668496
chr18	163307	163369	16715707	0	+	0.354839	(0.33,0.36]	chr18	1379080	1	CDS	CDS:UTR5:EXON_MRNA	USP14	ENSG00000101557.15	ENST00000582707.5:ENST00000400266.7:ENST00000261601.8:ENST00000580410.5:ENST00000578942.5:ENST00000383589.6:ENST00000581983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	17	2	1.57909	1.8282250000000002	2.07736	0.0532274	0.0442037	0.184818	0.172163
chr5	72205730	72205828	6027854	0	+	0.357143	(0.33,0.36]	chr5	472574	6	UTR3	UTR3:EXON_MRNA	MAP1B	ENSG00000131711.15	ENST00000296755.12	protein_coding	protein_coding	protein_coding	protein_coding	6	17	2	1.57909	1.8282250000000002	2.07736	0.0532274	0.0442037	0.184818	0.172163
chr3	194405721	194405819	4654497	0	-	0.285714	[0,0.29]	chr3	384345	32	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	26	2	1.34442	1.827875	2.31133	0.046303	0.00696038	0.170072	0.0474632
chr8	23571583	23571669	9230714	0	+	0.651163	(0.59,1]	chr8	706559	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	72	2	1.74761	1.827565	1.90752	0.0282297	0.011962800000000001	0.127287	0.0700164
chrX	134426813	134426912	18863546	0	+	0.414141	(0.39,0.42]	chrX	1607356	16	UTR3	UTR3:EXON_MRNA	PHF6	ENSG00000156531.17	ENST00000625464.2:ENST00000370803.8:ENST00000332070.7	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	1.31085	1.8271700000000002	2.34349	0.0408944	0.0169272	0.154725	0.0890655
chr17	47209422	47209522	16248465	0	+	0.66	(0.59,1]	chr17	1316182	1	CDS_START	CDS_START:CDS:EXON_MRNA	MYL4	ENSG00000198336.9	ENST00000571981.5:ENST00000572316.5:ENST00000354968.5:ENST00000570772.5:ENST00000536623.6:ENST00000576874.5:ENST00000573747.6:ENST00000393450.5:ENST00000572303.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	60	2	1.78511	1.8271199999999999	1.86913	0.0261127	0.0194297	0.118976	0.0973387
chr5	111498205	111498304	6760992	0	-	0.353535	(0.33,0.36]	chr5	519141	23	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	14	37	2	1.60213	1.826785	2.05144	0.0139784	0.00903135	0.0766916	0.0573114
chr17	82085676	82085773	16710756	0	-	0.752577	(0.59,1]	chr17	1378191	3	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	13	93	2	1.47691	1.8264	2.17589	0.0276361	0.00389949	0.124772	0.0313218
chr6	28904069	28904169	7652693	0	-	0.51	(0.49,0.53]	chr6	583183	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	TRIM27	ENSG00000204713.11	ENST00000377194.7:ENST00000377199.4:ENST00000481474.5:ENST00000414543.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	41	2	1.80005	1.826385	1.85272	0.0211739	0.00877398	0.101864	0.0562439
chr12	54241454	54241554	13342941	0	-	0.41	(0.39,0.42]	chr12	1049602	101	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	22	67	2	1.65263	1.8262049999999999	1.99978	0.00642234	0.00177031	0.0450905	0.0180914
chr19	56087458	56087552	17634540	0	-	0.574468	(0.53,0.59]	chr19	1489882	2	UTR3	UTR3:EXON_MRNA	ZNF787	ENSG00000142409.6	ENST00000610935.2	protein_coding	protein_coding	protein_coding	protein_coding	6	27	2	1.76849	1.82588	1.88327	0.0420665	0.0298124	0.158792	0.129773
chr16	28835932	28836009	15620395	0	+	0.688312	(0.59,1]	chr16	1238478	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000562583.5:ENST00000566946.5:ENST00000569318.1:ENST00000566007.5:ENST00000564162.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	8	55	2	1.54039	1.8255649999999999	2.11074	0.031435	0.0305	0.131481	0.130204
chr14	49894463	49894562	14276494	0	+	0.393939	(0.39,0.42]	chr14	1116061	3	UTR3	UTR3:EXON_MRNA	ARF6	ENSG00000165527.7	ENST00000298316.7	protein_coding	protein_coding	protein_coding	protein_coding	18	55	2	1.74071	1.825445	1.91018	0.00679848	0.00406425	0.0464575	0.032143
chr11	12962386	12962480	12277831	0	-	0.5	(0.49,0.53]	chr11	949292	10	EXON_LNCRNA	EXON_LNCRNA	LINC00958	ENSG00000251381.8	ENST00000658243.1:ENST00000527945.2	lncRNA	lncRNA	lncRNA	lncRNA	16	61	2	1.65491	1.82536	1.99581	0.0213636	0.00153119	0.102709	0.0155287
chr17	32000068	32000165	16197763	0	+	0.412371	(0.39,0.42]	chr17	1307779	12	UTR3	UTR3:EXON_MRNA	SUZ12	ENSG00000178691.11	ENST00000322652.10:ENST00000580398.1	protein_coding	protein_coding	protein_coding	protein_coding	6	20	2	1.77926	1.825225	1.87119	0.0429531	0.0373134	0.161091	0.152293
chr17	32360597	32360681	16200543	0	+	0.392857	(0.39,0.42]	chr17	1308155	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RP11-227G15.3:ZNF207	ENSG00000265794.5:ENSG00000010244.19	ENST00000581915.5:ENST00000578389.1:ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000579634.5:ENST00000580759.5:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000582165.1:ENST00000577324.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	21	66	2	1.78869	1.8252199999999998	1.86175	0.00605112	0.00274093	0.0437023	0.0238326
chr5	151805111	151805206	6299776	0	+	0.326316	(0.29,0.33]	chr5	491958	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	35	2	1.36268	1.824665	2.28665	0.0365909	0.0022585	0.145024	0.0214524
chr12	53415463	53415561	12886223	0	+	0.428571	(0.42,0.455]	chr12	1002329	44	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	9	28	2	1.30729	1.8246	2.34191	0.0552891	0.0159091	0.190984	0.0854674
chr21	8437440	8437539	18041918	0	+	0.474747	(0.455,0.49]	chr21	1530900	44	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	11501	37342	2	1.80709	1.82355	1.84001	6.56922e-5	4.14867e-5	0.00128203	9.7509e-4
chr8	11808796	11808886	9201756	0	+	0.522222	(0.49,0.53]	chr8	703021	3	CDS	CDS:UTR3:UTR5:EXON_MRNA:INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000530337.5:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525283.5:ENST00000529464.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000531733.1:ENST00000531249.2:ENST00000532266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	60	2	1.6049	1.8235299999999999	2.04216	0.00921595	0.00416368	0.0582594	0.0326175
chr1	162528932	162529032	507552	0	+	0.35	(0.33,0.36]	chr1	54762	65	UTR3	UTR3:EXON_MRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.63877	1.82321	2.00765	0.0287001	0.0146763	0.128757	0.0799372
chr5	103201733	103201833	6133277	0	+	0.33	(0.29,0.33]	chr5	479642	2	UTR3	UTR3:EXON_MRNA	PPIP5K2	ENSG00000145725.20	ENST00000321521.13:ENST00000358359.8:ENST00000613674.4:ENST00000414217.5:ENST00000627916.2:ENST00000509597.5	protein_coding	protein_coding	protein_coding	protein_coding	13	31	2	1.74949	1.823025	1.89656	0.0162875	0.00981789	0.0866586	0.06149
chr12	54241055	54241155	13342937	0	-	0.39	(0.36,0.39]	chr12	1049602	97	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9:ENST00000439541.6	protein_coding	protein_coding	protein_coding	protein_coding	36	103	2	1.82232	1.8225	1.82268	0.00211093	8.96651e-4	0.0205335	0.0102618
chrM	9403	9501	19377233	0	+	0.418367	(0.39,0.42]	chrM	1649818	2	CDS	CDS:EXON_MRNA	MT-CO3	ENSG00000198938.2	ENST00000362079.2	protein_coding	protein_coding	protein_coding	protein_coding	107	314	2	1.7218	1.8225	1.9232	5.11798e-4	8.24654e-5	0.00664583	0.00170898
chr3	196051744	196051842	4663158	0	-	0.357143	(0.33,0.36]	chr3	385550	26	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	33	86	2	1.76594	1.82224	1.87854	0.00286216	9.69581e-4	0.0255384	0.0108507
chr1	167541308	167541407	1347829	0	-	0.424242	(0.42,0.455]	chr1	137992	4	UTR3	UTR3:EXON_MRNA:INTRON	CREG1	ENSG00000143162.9	ENST00000466652.2:ENST00000370509.5	protein_coding	protein_coding	protein_coding	protein_coding	53	180	2	1.5198	1.822105	2.12441	0.00397298	6.97666e-5	0.0322851	0.00134581
chr6	67882480	67882579	7784085	0	-	0.343434	(0.33,0.36]	chr6	596223	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	149	374	2	1.66775	1.82144	1.97513	4.11524e-4	5.34653e-5	0.00559326	0.0011912
chr6	37171215	37171307	7136261	0	+	0.597826	(0.59,1]	chr6	549937	2	CDS	CDS:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	52	384	2	1.54147	1.821245	2.10102	0.00697082	2.28971e-4	0.0474705	0.00351741
chr6	42207794	42207892	7703609	0	-	0.387755	(0.36,0.39]	chr6	590783	11	UTR3	UTR3:EXON_MRNA	MRPS10	ENSG00000048544.6	ENST00000053468.4	protein_coding	protein_coding	protein_coding	protein_coding	10	31	2	1.53109	1.82105	2.11101	0.0522406	0.00480242	0.19442	0.0365653
chr6	28158470	28158569	7105836	0	+	0.393939	(0.39,0.42]	chr6	543601	46	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	18	54	2	1.5323	1.821015	2.10973	0.0113114	0.00359606	0.0665375	0.0302737
chr9	35713195	35713246	10639636	0	-	0.568627	(0.53,0.59]	chr9	805077	1	CDS	CDS:EXON_MRNA	TLN1	ENSG00000137076.21	ENST00000314888.10	protein_coding	protein_coding	protein_coding	protein_coding	6	26	2	1.60161	1.821005	2.0404	0.0451605	0.0362529	0.167576	0.148525
chrX	153695214	153695312	18915643	0	+	0.632653	(0.59,1]	chrX	1611204	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000485324.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	133	2	1.49922	1.8208000000000002	2.14238	0.0157541	0.00219635	0.0848748	0.0203496
chr6	67887955	67888054	7784140	0	-	0.50505	(0.49,0.53]	chr6	596229	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	68	244	2	1.55694	1.820505	2.08407	0.00222892	6.26919e-5	0.0212246	0.00124286
chr11	118751003	118751102	12625437	0	-	0.262626	[0,0.29]	chr11	979521	34	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4	protein_coding	protein_coding	protein_coding	protein_coding	30	69	2	1.71405	1.820435	1.92682	0.00590259	0.00184213	0.0427941	0.0177936
chr6	136259016	136259116	7982287	0	-	0.29	[0,0.29]	chr6	610291	25	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000533422.5:ENST00000527536.5:ENST00000527613.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	30	2	1.59833	1.8202600000000002	2.04219	0.0350112	0.00477383	0.145163	0.0363623
chr7	5605867	5605966	8112126	0	+	0.666667	(0.59,1]	chr7	620041	5	UTR3	UTR3:EXON_MRNA	FSCN1	ENSG00000075618.18	ENST00000382361.8:ENST00000473330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	60	2	1.63662	1.8202150000000001	2.00381	0.0410169	0.0121278	0.163285	0.0701019
chr18	77989818	77989914	17184429	0	-	0.520833	(0.49,0.53]	chr18	1410270	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01029	ENSG00000265843.3	ENST00000657337.1:ENST00000669341.1:ENST00000671271.1:ENST00000668585.1:ENST00000667842.1:ENST00000661306.1:ENST00000662598.1:ENST00000662085.1:ENST00000582805.1:ENST00000656930.1:ENST00000578833.3	lncRNA	lncRNA	lncRNA	lncRNA	13	47	2	1.67282	1.8202099999999999	1.9676	0.0118337	0.00876974	0.0692771	0.056115
chr9	83975461	83975505	10712949	0	-	0.590909	(0.59,1]	chr9	810527	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000376256.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	60	2	1.72057	1.82015	1.91973	0.0314051	0.0167506	0.131369	0.0883702
chr1	10413061	10413156	39841	0	+	0.431579	(0.42,0.455]	chr1	4810	1	CDS	CDS:EXON_MRNA	PGD	ENSG00000142657.21	ENST00000270776.13:ENST00000483936.5:ENST00000460189.1:ENST00000493288.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	78	2	1.39068	1.820065	2.24945	0.0249398	2.59334e-4	0.116361	0.00389266
chr7	5529149	5529221	8659494	0	-	0.694444	(0.59,1]	chr7	662123	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6:ENST00000645025.1:ENST00000480301.1:ENST00000443528.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	176	2	1.52422	1.820045	2.11587	0.0110882	0.00120742	0.0655042	0.0129384
chrX	54563196	54563296	18704380	0	+	0.37	(0.36,0.39]	chrX	1596125	27	UTR3	UTR3:EXON_MRNA:INTRON	GNL3L	ENSG00000130119.17	ENST00000674498.1:ENST00000360845.3	protein_coding	protein_coding	protein_coding	protein_coding	8	23	2	1.78505	1.81997	1.85489	0.0350721	0.0228572	0.141601	0.108215
chr6	34590464	34590564	7674105	0	-	0.5	(0.49,0.53]	chr6	588118	33	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	7	26	2	1.64924	1.8198400000000001	1.99044	0.0435903	0.0286659	0.170594	0.126175
chr16	1964275	1964362	15823837	0	-	0.517241	(0.49,0.53]	chr16	1261870	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	52	2	1.58979	1.819585	2.04938	0.0211872	0.00271214	0.101914	0.023726
chr17	81887834	81887932	16709763	0	-	0.367347	(0.36,0.39]	chr17	1377760	1	UTR3	UTR3:EXON_MRNA	ALYREF	ENSG00000183684.8	ENST00000505490.3	protein_coding	protein_coding	protein_coding	protein_coding	15	43	2	1.41208	1.819315	2.22655	0.0344978	0.00169792	0.143262	0.0166327
chr17	32482223	32482323	16201214	0	+	0.41	(0.39,0.42]	chr17	1308289	17	UTR3	UTR3:EXON_MRNA	PSMD11	ENSG00000108671.11	ENST00000649012.1:ENST00000261712.8	protein_coding	protein_coding	protein_coding	protein_coding	14	46	2	1.50045	1.81875	2.13705	0.0335886	0.00175575	0.1408	0.0171455
chrX	91798092	91798187	18761476	0	+	0.357895	(0.33,0.36]	chrX	1600537	1	EXON_SMALL	EXON_SMALL:INTRON	PCDH11X:RNU2-26P	ENSG00000102290.23:ENSG00000222440.1	ENST00000298274.12:ENST00000682573.1:ENST00000410508.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:processed_transcript	9	26	2	1.65713	1.81853	1.97993	0.0528205	0.00884101	0.195536	0.0563713
chr2	189475317	189475417	2272101	0	+	0.34	(0.33,0.36]	chr2	206288	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	WDR75	ENSG00000115368.10	ENST00000436347.5:ENST00000314761.9:ENST00000427960.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	16	2	1.65713	1.8177750000000001	1.97842	0.0528205	0.0469469	0.195536	0.171977
chr21	14521521	14521621	18164167	0	-	0.35	(0.33,0.36]	chr21	1542473	3	SS3_PROX	SS3_PROX:INTRON	SAMSN1	ENSG00000155307.19	ENST00000647101.1:ENST00000644288.1:ENST00000400564.5:ENST00000400566.6:ENST00000285670.7:ENST00000619120.4:ENST00000493640.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	20	2	1.8112	1.81757	1.82394	0.0494504	0.0257865	0.18557	0.116737
chr2	96816470	96816564	1944055	0	+	0.787234	(0.59,1]	chr2	184222	2	CDS	CDS:EXON_MRNA	CNNM3	ENSG00000168763.16	ENST00000377060.7:ENST00000305510.4	protein_coding	protein_coding	protein_coding	protein_coding	8	58	2	1.48516	1.8173650000000001	2.14957	0.047789	0.0126053	0.18008	0.0719957
chrX	65740669	65740766	18716372	0	+	0.494845	(0.49,0.53]	chrX	1596885	9	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	35	124	2	1.78856	1.81719	1.84582	0.00163152	0.00104159	0.0170178	0.0115753
chr12	24814613	24814713	13255702	0	-	0.37	(0.36,0.39]	chr12	1038842	47	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	13	36	2	1.4539	1.817095	2.18029	0.024742	0.0077769	0.113366	0.0517139
chr1	23695852	23695908	98670	0	+	0.553571	(0.53,0.59]	chr1	11427	2	CDS	CDS:UTR3:EXON_MRNA	RPL11	ENSG00000142676.14	ENST00000374550.8:ENST00000643754.2:ENST00000443624.6:ENST00000467075.2:ENST00000458455.2:ENST00000482370.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	62	239	2	1.4013	1.816545	2.23179	0.00480534	6.05386e-5	0.0365653	0.00131594
chr6	152974906	152975002	8029546	0	-	0.395833	(0.39,0.42]	chr6	614134	1	CDS	CDS:EXON_MRNA	FBXO5	ENSG00000112029.10	ENST00000367241.3:ENST00000229758.8	protein_coding	protein_coding	protein_coding	protein_coding	10	31	2	1.75252	1.8164950000000002	1.88047	0.0297286	0.0102027	0.130016	0.062872
chr9	128163692	128163769	10476939	0	+	0.675325	(0.59,1]	chr9	789634	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	C9orf16	ENSG00000171159.5	ENST00000372994.2:ENST00000492588.1:ENST00000486420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	44	2	1.66744	1.81569	1.96394	0.0453144	0.0369183	0.174798	0.145208
chr6	26138439	26138536	7101275	0	+	0.350515	(0.33,0.36]	chr6	542801	5	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	66	2	1.61327	1.815445	2.01762	0.00723685	0.00113408	0.0488995	0.0123374
chr17	32360891	32360967	16200548	0	+	0.552632	(0.53,0.59]	chr17	1308159	1	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000577324.1:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	46	2	1.68604	1.815205	1.94437	0.0143432	0.0138057	0.0783202	0.0757871
chr10	101787443	101787523	11665799	0	-	0.35	(0.33,0.36]	chr10	889344	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8:ENST00000462994.1:ENST00000357797.9:ENST00000482611.5:ENST00000494347.5:ENST00000479811.5:ENST00000461645.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	17	2	1.80608	1.81501	1.82394	0.0494504	0.0416784	0.18557	0.157445
chrX	16844736	16844835	18971679	0	-	0.333333	(0.33,0.36]	chrX	1615428	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000425696.5:ENST00000380087.7:ENST00000330735.7:ENST00000380084.8:ENST00000465244.1:ENST00000404022.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	31	2	1.81447	1.8144900000000002	1.81451	0.0171093	0.0120734	0.0903794	0.0695634
chr16	67099372	67099471	15708067	0	+	0.373737	(0.36,0.39]	chr16	1249605	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000290858.11:ENST00000412916.7:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000568858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	27	2	1.81362	1.813985	1.81435	0.0302191	0.016627	0.129773	0.0880236
chr17	64500022	64500098	16639708	0	-	0.421053	(0.42,0.455]	chr17	1368475	1	CDS	CDS:UTR3:EXON_MRNA	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000580026.6:ENST00000678757.1:ENST00000676581.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000583212.2:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578804.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	72	2	1.17109	1.813785	2.45648	0.0429032	1.7815e-4	0.168598	0.00288535
chr17	78168616	78168715	16367680	0	+	0.747475	(0.59,1]	chr17	1329548	1	CDS_START	CDS_START:CDS:EXON_MRNA	SYNGR2	ENSG00000108639.8	ENST00000225777.8:ENST00000585591.5:ENST00000589183.1:ENST00000589711.1:ENST00000591770.1:ENST00000588282.5:ENST00000589168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	44	2	1.58352	1.8135700000000001	2.04362	0.0477456	0.036186	0.179958	0.145024
chr10	46006215	46006309	11470926	0	-	0.351064	(0.33,0.36]	chr10	874825	13	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5:ENST00000585056.5:ENST00000583565.5	protein_coding	protein_coding	protein_coding	protein_coding	24	70	2	1.63696	1.813215	1.98947	0.0194161	5.48716e-4	0.0944741	0.00697672
chr4	151100536	151100588	5165555	0	+	0.423077	(0.42,0.455]	chr4	417307	2	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000505243.5:ENST00000514682.5:ENST00000515818.5:ENST00000503002.5:ENST00000512690.5:ENST00000508783.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	112	2	1.63307	1.8131249999999999	1.99318	0.00311783	6.09736e-4	0.0275048	0.00761177
chr14	89712666	89712744	14453009	0	+	0.564103	(0.53,0.59]	chr14	1128324	3	EXON_SMALL	EXON_SMALL	RN7SKP255	ENSG00000200312.1	ENST00000363442.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	11	44	2	1.55616	1.8127300000000002	2.0693	0.018611	0.0160468	0.0952021	0.0860154
chr1	28509269	28509360	117116	0	+	0.450549	(0.42,0.455]	chr1	14302	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	53	167	2	1.76338	1.8125749999999998	1.86177	6.79938e-4	6.45704e-4	0.00876781	0.00799743
chr21	8442866	8442966	18041973	0	+	0.48	(0.455,0.49]	chr21	1530902	30	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	4380	14059	2	1.58399	1.81254	2.04109	3.79847e-4	7.24971e-6	0.00526946	2.31575e-4
chr12	120697733	120697831	13117483	0	+	0.418367	(0.39,0.42]	chr12	1024005	13	UTR3	UTR3:EXON_MRNA:INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000535413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	31	2	1.4947	1.8125149999999999	2.13033	0.0374865	0.00865856	0.147062	0.0557159
chr2	207687959	207688059	2344286	0	+	0.44	(0.42,0.455]	chr2	211710	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200764.1	ENST00000363894.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	9	30	2	1.5897	1.81251	2.03532	0.040947	0.0208528	0.163285	0.101022
chr19	58393358	58393422	17412756	0	+	0.609375	(0.59,1]	chr19	1451036	1	CDS	CDS:EXON_MRNA	RPS5	ENSG00000083845.9	ENST00000601521.5:ENST00000596314.5:ENST00000598098.5:ENST00000196551.8:ENST00000598495.5:ENST00000598807.1:ENST00000596046.1:ENST00000599232.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	152	2	1.24071	1.812445	2.38418	0.03058	7.30875e-4	0.130016	0.00918532
chr10	1012563	1012662	10898826	0	+	0.444444	(0.42,0.455]	chr10	829381	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000483839.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	21	2	1.58956	1.81244	2.03532	0.0485703	0.040947	0.175495	0.163285
chr4	118723118	118723217	5617825	0	-	0.30303	(0.29,0.33]	chr4	447551	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000505134.5:ENST00000511481.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	26	2	1.44593	1.81224	2.17855	0.0319221	0.0183673	0.133433	0.0928041
chr6	113940858	113940957	7902926	0	-	0.282828	[0,0.29]	chr6	605380	80	UTR3	UTR3:EXON_MRNA	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000519108.5:ENST00000523334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	40	2	1.36411	1.81216	2.26021	0.0254206	0.00206871	0.115196	0.0202834
chr2	152760626	152760724	2139529	0	+	0.22449	[0,0.29]	chr2	198151	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARL6IP6	ENSG00000177917.11	ENST00000495469.5:ENST00000326446.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	19	2	1.67519	1.8117999999999999	1.94841	0.0427374	0.0299989	0.168094	0.130016
chr21	8394025	8394124	18041470	0	+	0.555556	(0.53,0.59]	chr21	1530861	52	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	7528	29788	2	1.52623	1.81168	2.09713	6.98154e-4	8.31705e-6	0.00846751	2.58628e-4
chr7	5529557	5529657	8659501	0	-	0.68	(0.59,1]	chr7	662128	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6:ENST00000645025.1:ENST00000480301.1:ENST00000443528.5:ENST00000417101.2:ENST00000414620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	87	700	2	1.32059	1.8112050000000002	2.30182	0.0123182	4.62234e-5	0.0706887	0.00106448
chr19	48966406	48966482	17368095	0	+	0.552632	(0.53,0.59]	chr19	1442247	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FTL	ENSG00000087086.15	ENST00000331825.11	protein_coding	protein_coding	protein_coding	protein_coding	15	56	2	1.46832	1.811175	2.15403	0.0145931	0.0118065	0.0794902	0.0686664
chr6	67883377	67883477	7784094	0	-	0.45	(0.42,0.455]	chr6	596223	13	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	135	433	2	1.78613	1.811	1.83587	2.13991e-4	1.61911e-4	0.00331916	0.00288976
chr1	65635231	65635329	253673	0	+	0.255102	[0,0.29]	chr1	28907	22	UTR3	UTR3:EXON_MRNA:INTRON	LEPR	ENSG00000116678.20	ENST00000371060.7:ENST00000349533.11:ENST00000616738.4	protein_coding	protein_coding	protein_coding	protein_coding	7	16	2	1.80685	1.81095	1.81505	0.0438772	0.0409713	0.163572	0.163285
chr6	31540475	31540532	7661185	0	-	0.473684	(0.455,0.49]	chr6	584718	2	CDS_START	CDS_START:CDS:UTR3:UTR5:EXON_MRNA	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5:ENST00000428450.5:ENST00000449757.5:ENST00000456976.5:ENST00000418897.5:ENST00000419020.1:ENST00000480131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	41	2	1.5448	1.810355	2.07591	0.0314044	0.00374552	0.131369	0.0313437
chr12	2803353	2803448	12696872	0	+	0.473684	(0.455,0.49]	chr12	984985	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	FKBP4	ENSG00000004478.8	ENST00000001008.6:ENST00000544366.1	protein_coding	protein_coding	protein_coding	protein_coding	12	41	2	1.7301	1.81007	1.89004	0.0168678	0.00821956	0.0889456	0.0534646
chr12	24814214	24814314	13255698	0	-	0.36	(0.33,0.36]	chr12	1038842	43	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	14	35	2	1.39812	1.8095700000000001	2.22102	0.0270818	0.00736622	0.120128	0.0490627
chr12	98534441	98534540	13036722	0	+	0.323232	(0.29,0.33]	chr12	1014956	2	UTR3	UTR3:EXON_MRNA:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000261210.9:ENST00000552831.1:ENST00000556678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	29	2	1.62519	1.80957	1.99395	0.0201432	0.0131526	0.0984041	0.0733631
chr1	228494652	228494748	746495	0	+	0.427083	(0.42,0.455]	chr1	75813	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	RNF187	ENSG00000168159.14	ENST00000305943.9:ENST00000482739.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	92	2	1.43792	1.80911	2.1803	0.0181936	2.13502e-4	0.0925808	0.00331333
chr6	18225033	18225130	7622467	0	-	0.268041	[0,0.29]	chr6	580929	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DEK	ENSG00000124795.17	ENST00000652689.1:ENST00000652292.1:ENST00000651624.1:ENST00000515770.2:ENST00000651992.1:ENST00000507591.2:ENST00000505224.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	124	2	1.58105	1.8090549999999999	2.03706	0.00390169	1.27027e-4	0.0322851	0.00219948
chr3	180977087	180977186	3933754	0	+	0.272727	[0,0.29]	chr3	330755	9	UTR3	UTR3:EXON_MRNA	FXR1	ENSG00000114416.18	ENST00000305586.11:ENST00000357559.9:ENST00000445140.6	protein_coding	protein_coding	protein_coding	protein_coding	11	25	2	1.65198	1.8090199999999999	1.96606	0.0369328	0.0100719	0.151225	0.0624353
chr10	69315869	69315954	11095972	0	+	0.564706	(0.53,0.59]	chr10	843709	2	UTR5	UTR5:EXON_MRNA:INTRON	HK1	ENSG00000156515.24	ENST00000436817.6:ENST00000360289.6:ENST00000448642.6:ENST00000480047.5:ENST00000450646.6:ENST00000483077.5:ENST00000464803.6:ENST00000476368.6:ENST00000643399.2:ENST00000483054.5:ENST00000421088.5:ENST00000298649.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	35	2	1.60161	1.80901	2.01641	0.0451605	0.0108917	0.167576	0.0645168
chr3	139357662	139357762	4479462	0	-	0.38	(0.36,0.39]	chr3	372202	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	COPB2	ENSG00000184432.11	ENST00000503326.6:ENST00000677882.1:ENST00000677601.1:ENST00000677309.1:ENST00000677073.1:ENST00000502734.2:ENST00000676700.1:ENST00000512242.6:ENST00000507777.6:ENST00000514508.2:ENST00000333188.10:ENST00000510181.6:ENST00000512309.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	23	2	1.53109	1.8089	2.08671	0.0522406	0.01635	0.19442	0.0867615
chr6	34288452	34288552	7672486	0	-	0.54	(0.53,0.59]	chr6	588026	89	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	20	80	2	1.59219	1.8088	2.02541	0.00737348	0.00300338	0.0492519	0.0267032
chr1	35920602	35920701	138962	0	+	0.515152	(0.49,0.53]	chr1	17250	10	UTR3	UTR3:EXON_MRNA	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	8	30	2	1.76393	1.808325	1.85272	0.0279906	0.0211739	0.123926	0.101864
chr1	25342960	25343016	104110	0	+	0.375	(0.36,0.39]	chr1	12206	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5:ENST00000468704.1:ENST00000487234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	30	2	1.80227	1.80831	1.81435	0.0302191	0.0123074	0.129773	0.070688
chr17	4948474	4948555	16419526	0	-	0.765432	(0.59,1]	chr17	1337740	2	CDS	CDS:UTR5:EXON_MRNA	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000572383.1	protein_coding	protein_coding	protein_coding	protein_coding	16	125	2	1.40785	1.8082349999999998	2.20862	0.0398271	0.00102052	0.152926	0.0121223
chr12	56663910	56664004	13352204	0	-	0.276596	[0,0.29]	chr12	1051779	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	81	2	1.77106	1.8081200000000002	1.84518	0.00178515	0.0015721	0.0182351	0.0157455
chr21	33539215	33539315	18220705	0	-	0.5	(0.49,0.53]	chr21	1546429	1	CDS_START	CDS_START:CDS:EXON_MRNA	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000430874.5:ENST00000426819.5:ENST00000476524.1:ENST00000438059.5:ENST00000441403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	54	2	1.77058	1.8081200000000002	1.84566	0.0133397	0.00433858	0.0743125	0.0339139
chr4	56393958	56394057	5434651	0	-	0.252525	[0,0.29]	chr4	435047	7	UTR3	UTR3:EXON_MRNA	PPAT	ENSG00000128059.8	ENST00000264220.6:ENST00000425339.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	25	2	1.27043	1.808115	2.3458	0.0511974	0.0116272	0.182605	0.0685835
chr6	31806826	31806896	7662695	0	-	0.771429	(0.59,1]	chr6	585376	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	LSM2	ENSG00000204392.11	ENST00000375661.6:ENST00000477182.5:ENST00000470086.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	63	2	1.49936	1.80789	2.11642	0.0358913	0.0144884	0.144634	0.0790431
chr9	83968959	83969056	10712864	0	-	0.484536	(0.455,0.49]	chr9	810477	10	UTR3	UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.79605	1.80768	1.81931	0.0427708	0.0235519	0.168094	0.108737
chr1	33012891	33012987	924452	0	-	0.375	(0.36,0.39]	chr1	97516	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11:ENST00000672308.1:ENST00000548033.5:ENST00000491241.1:ENST00000467905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	26	2	1.78505	1.807445	1.82984	0.0234753	0.0228572	0.108434	0.108215
chr7	121295751	121295850	8496827	0	+	0.40404	(0.39,0.42]	chr7	648451	2	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	30	93	2	1.35915	1.807365	2.25558	0.016769	1.55367e-4	0.0884652	0.0025871
chr16	23684015	23684089	15595279	0	+	0.567568	(0.53,0.59]	chr16	1236727	3	CDS	CDS:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9:ENST00000567897.6:ENST00000562407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	59	2	1.78852	1.807325	1.82613	0.0249781	0.00374193	0.116495	0.0303708
chr2	47161722	47161780	2631456	0	-	0.37931	(0.36,0.39]	chr2	236923	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-761B3.1:CALM2	ENSG00000273269.3:ENSG00000143933.19	ENST00000422269.1:ENST00000628793.2:ENST00000272298.12:ENST00000652974.1:ENST00000460218.5:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000670593.1:ENST00000655728.1:ENST00000482532.5:ENST00000409563.5:ENST00000484408.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	49	2	1.77812	1.80615	1.83418	0.00997757	0.00498068	0.0622177	0.0369796
chr22	41907016	41907113	18383962	0	+	0.587629	(0.53,0.59]	chr22	1565112	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	41	2	1.63267	1.805975	1.97928	0.0218546	0.0170789	0.104785	0.0902695
chr16	1701106	1701204	15488692	0	+	0.479592	(0.455,0.49]	chr16	1226190	10	UTR3	UTR3:EXON_MRNA:INTRON	JPT2	ENSG00000206053.13	ENST00000562684.5:ENST00000248098.8:ENST00000562569.1	protein_coding	protein_coding	protein_coding	protein_coding	13	45	2	1.80094	1.80592	1.8109	0.0265942	0.00510461	0.120205	0.0377199
chrX	41673992	41674090	19049234	0	-	0.367347	(0.36,0.39]	chrX	1619182	21	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643853.1:ENST00000643831.2:ENST00000647118.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	38	2	1.66836	1.80532	1.94228	0.0474647	0.00354663	0.17993	0.0291792
chr12	49763866	49763963	12869281	0	+	0.43299	(0.42,0.455]	chr12	999645	11	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1	protein_coding	protein_coding	protein_coding	protein_coding	11	38	2	1.44978	1.80487	2.15996	0.0463803	0.00365851	0.177188	0.0299719
chr10	43387212	43387307	11461765	0	-	0.610526	(0.59,1]	chr10	873955	6	CDS	CDS:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	21	151	2	1.72077	1.804655	1.88854	0.0137395	0.00211995	0.0760883	0.0198025
chr12	50001170	50001241	13327304	0	-	0.521127	(0.49,0.53]	chr12	1046359	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RACGAP1	ENSG00000161800.13	ENST00000312377.10:ENST00000427314.6:ENST00000454520.6:ENST00000551016.5:ENST00000547905.5:ENST00000547061.5:ENST00000548320.5:ENST00000548598.5:ENST00000552310.5:ENST00000548158.1:ENST00000550149.5:ENST00000546786.5:ENST00000546595.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	25	2	1.4742	1.804605	2.13501	0.0502928	0.0287874	0.180775	0.128869
chrX	65737177	65737257	18716334	0	+	0.5875	(0.53,0.59]	chrX	1596869	1	CDS	CDS:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	12	47	2	1.53931	1.804305	2.0693	0.0165923	0.0160468	0.0878626	0.0860154
chr1	32774573	32774672	130820	0	+	0.50505	(0.49,0.53]	chr1	16163	18	UTR3	UTR3:EXON_MRNA	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	9	33	2	1.70501	1.804255	1.9035	0.0295204	0.017267	0.129773	0.091184
chr12	56272387	56272487	13349841	0	-	0.35	(0.33,0.36]	chr12	1051002	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	56	141	2	1.68691	1.803935	1.92096	0.00106687	4.66472e-4	0.0118238	0.00660476
chr1	24655037	24655129	101992	0	+	0.48913	(0.455,0.49]	chr1	11987	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1:ENST00000470243.5:ENST00000496882.5:ENST00000461768.5:ENST00000485541.1:ENST00000488317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	44	2	1.80165	1.80393	1.80621	0.012455	0.00883114	0.0710484	0.0563279
chr12	24813715	24813815	13255693	0	-	0.31	(0.29,0.33]	chr12	1038842	38	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	15	35	2	1.52211	1.80355	2.08499	0.0241033	0.00414169	0.110691	0.0325842
chr11	118747860	118747958	12625405	0	-	0.479592	(0.455,0.49]	chr11	979521	2	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4	protein_coding	protein_coding	protein_coding	protein_coding	19	64	2	1.31688	1.802835	2.28879	0.0323975	5.09335e-4	0.136233	0.00662599
chr4	121816841	121816940	5626263	0	-	0.30303	(0.29,0.33]	chr4	448530	5	UTR3	UTR3:EXON_MRNA	CCNA2	ENSG00000145386.11	ENST00000274026.10	protein_coding	protein_coding	protein_coding	protein_coding	15	35	2	1.48905	1.8024900000000001	2.11593	0.0194969	0.00799071	0.0976714	0.0527444
chr11	65438275	65438375	11984726	0	+	0.2	[0,0.29]	chr11	920390	143	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	9	19	2	1.65198	1.80212	1.95226	0.0369328	0.0282226	0.151225	0.124386
chr17	75181056	75181080	16682627	0	-	0.416667	(0.39,0.42]	chr17	1372991	1	CDS_START	CDS_START:CDS:EXON_MRNA	SUMO2	ENSG00000188612.12	ENST00000420826.7:ENST00000314523.7:ENST00000578238.2	protein_coding	protein_coding	protein_coding	protein_coding	20	57	2	1.3596	1.80207	2.24454	0.019351	0.00181306	0.0969708	0.0183913
chr5	43495861	43495960	6561278	0	-	0.393939	(0.39,0.42]	chr5	508493	9	EXON_PSEUDO	EXON_PSEUDO:INTRON	C5orf34:EEF1A1P19	ENSG00000172244.9:ENSG00000249855.1	ENST00000306862.7:ENST00000503655.2:ENST00000513637.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:nonsense_mediated_decay:processed_pseudogene	14	48	2	1.66154	1.801715	1.94189	0.0452475	0.00208619	0.174743	0.0196013
chr22	20951698	20951796	18300200	0	+	0.367347	(0.36,0.39]	chr22	1553647	20	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	43	126	2	1.53918	1.80151	2.06384	0.00595665	1.4521e-4	0.0430871	0.00244021
chr19	1091808	1091907	17417477	0	-	0.585859	(0.53,0.59]	chr19	1452119	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	POLR2E	ENSG00000099817.12	ENST00000615234.5:ENST00000586746.5:ENST00000590060.5:ENST00000612655.4:ENST00000589737.5:ENST00000591767.5:ENST00000215587.11:ENST00000586817.5:ENST00000619917.4:ENST00000585838.2:ENST00000614705.4:ENST00000591709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	26	2	1.70379	1.8009249999999999	1.89806	0.0532477	0.0330081	0.184818	0.138711
chr6	33301168	33301267	7669214	0	-	0.40404	(0.39,0.42]	chr6	587559	16	UTR3	UTR3:EXON_MRNA	TAPBP	ENSG00000231925.12	ENST00000434618.7	protein_coding	protein_coding	protein_coding	protein_coding	15	45	2	1.49151	1.8006199999999999	2.10973	0.0209416	0.00359606	0.101311	0.0302737
chr11	119088634	119088713	12161962	0	+	0.518987	(0.49,0.53]	chr11	937703	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000536185.5:ENST00000652429.1:ENST00000545621.5:ENST00000545901.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000543821.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1:ENST00000544360.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	34	2	1.56467	1.800515	2.03636	0.051923	0.00653228	0.18423900000000001	0.0454205
chr19	18280821	18280915	17499048	0	-	0.776596	(0.59,1]	chr19	1468048	4	CDS	CDS:EXON_MRNA	JUND	ENSG00000130522.6	ENST00000252818.5:ENST00000600972.1	protein_coding	protein_coding	protein_coding	protein_coding	6	44	2	1.63662	1.80039	1.96416	0.044741	0.0410169	0.166115	0.163285
chr17	41754698	41754793	16542971	0	-	0.631579	(0.59,1]	chr17	1356256	2	UTR3	UTR3:EXON_MRNA	JUP	ENSG00000173801.17	ENST00000310706.9:ENST00000393930.5:ENST00000393931.8	protein_coding	protein_coding	protein_coding	protein_coding	7	48	2	1.42148	1.800185	2.17889	0.0566164	0.025085	0.194397	0.116848
chr7	158734011	158734108	9159308	0	-	0.278351	[0,0.29]	chr7	699685	32	UTR3	UTR3:EXON_MRNA	ESYT2	ENSG00000117868.17	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	38	2	1.5649	1.8001749999999999	2.03545	0.0197322	0.00339809	0.095966	0.0283451
chr6	158766717	158766815	8043901	0	-	0.5	(0.49,0.53]	chr6	614903	11	UTR3	UTR3:EXON_MRNA	EZR	ENSG00000092820.18	ENST00000337147.11:ENST00000392177.8:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	6	23	2	1.69633	1.799915	1.9035	0.0531914	0.0295204	0.184818	0.129773
chr1	28743692	28743790	118419	0	+	0.489796	(0.455,0.49]	chr1	14542	13	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	28	2	1.68956	1.799555	1.90955	0.0381365	0.0171034	0.155455	0.0903636
chr21	34097059	34097157	18104987	0	+	0.489796	(0.455,0.49]	chr21	1534981	19	CDS	CDS:EXON_MRNA:INTRON	MRPS6:SLC5A3:AP000320.7	ENSG00000243927.6:ENSG00000198743.7:ENSG00000272657.1	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5:ENST00000362077.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	8	28	2	1.68956	1.799555	1.90955	0.0381365	0.0171034	0.155455	0.0903636
chr2	197401399	197401462	3106397	0	-	0.444444	(0.42,0.455]	chr2	274535	1	CDS	CDS:UTR3:EXON_MRNA	SF3B1	ENSG00000115524.17	ENST00000652026.1:ENST00000652738.1:ENST00000335508.11:ENST00000470268.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	25	2	1.71996	1.79952	1.87908	0.0542346	0.0189336	0.199653	0.0958835
chr21	6807562	6807662	18039329	0	+	0.37	(0.36,0.39]	chr21	1530653	94	INTRON	INTRON	CH507-210P18.1	ENSG00000279998.1	ENST00000623678.1	lncRNA	lncRNA	lncRNA	lncRNA	216	566	2	1.31275	1.799445	2.28614	0.00362925	1.85987e-6	0.0298058	7.47069e-5
chr11	5505501	5505576	12243157	0	-	0.426667	(0.42,0.455]	chr11	946192	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	16	58	2	1.43196	1.7991099999999998	2.16626	0.0399324	7.54594e-4	0.162323	0.00902115
chr3	57597140	57597232	4210929	0	-	0.576087	(0.53,0.59]	chr3	355347	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARF4	ENSG00000168374.11	ENST00000303436.11:ENST00000496292.5:ENST00000489843.1:ENST00000486310.5:ENST00000483848.5:ENST00000463880.1:ENST00000493378.1:ENST00000495354.1:ENST00000488156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	58	2	1.46391	1.7990750000000002	2.13424	0.0264984	0.00254381	0.120071	0.0227544
chr19	41307317	41307411	17334341	0	+	0.393617	(0.39,0.42]	chr19	1436801	9	UTR3	UTR3:EXON_MRNA	HNRNPUL1	ENSG00000105323.17	ENST00000352456.7:ENST00000392006.8	protein_coding	protein_coding	protein_coding	protein_coding	12	39	2	1.50406	1.79887	2.09368	0.0413581	0.00324532	0.164391	0.0271838
chr10	68962081	68962157	11093185	0	+	0.342105	(0.33,0.36]	chr10	843228	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	20	47	2	1.70862	1.798825	1.88903	0.00883549	0.00506563	0.0563505	0.0388526
chr12	42454770	42454821	12840261	0	+	0.45098	(0.42,0.455]	chr12	997451	2	EXON_SMALL	EXON_SMALL:INTRON	PPHLN1:Y_RNA	ENSG00000134283.18:ENSG00000207142.1	ENST00000317560.13:ENST00000384413.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	304	946	2	1.38411	1.7985699999999998	2.21303	0.00217836	2.92219e-6	0.0202707	1.09189e-4
chr2	28800875	28800974	1702907	0	+	0.272727	[0,0.29]	chr2	167042	17	UTR3	UTR3:EXON_MRNA:INTRON	PPP1CB:SPDYA	ENSG00000213639.10:ENSG00000163806.16	ENST00000358506.6:ENST00000296122.10:ENST00000395366.3:ENST00000462832.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	23	2	1.72144	1.7984550000000001	1.87547	0.0389538	0.0144841	0.158558	0.0789039
chr2	231464452	231464551	3226828	0	-	0.636364	(0.59,1]	chr2	283897	2	UTR5	UTR5:EXON_MRNA:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000677786.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	59	2	1.72057	1.7984049999999998	1.87624	0.0314051	0.0194045	0.131369	0.0944333
chrM	10058	10144	19377240	0	+	0.325581	(0.29,0.33]	chrM	1649820	1	CDS	CDS:EXON_MRNA	MT-ND3	ENSG00000198840.2	ENST00000361227.2	protein_coding	protein_coding	protein_coding	protein_coding	108	233	2	1.61829	1.797875	1.97746	8.96463e-4	9.15554e-5	0.0108877	0.00168607
chr1	39576696	39576790	953099	0	-	0.542553	(0.53,0.59]	chr1	100599	9	UTR5	UTR5:EXON_MRNA	PABPC4	ENSG00000090621.15	ENST00000372858.8:ENST00000372856.7:ENST00000372857.7:ENST00000451091.2:ENST00000531243.2	protein_coding	protein_coding	protein_coding	protein_coding	18	67	2	1.17469	1.797495	2.4203	0.0423636	9.63254e-4	0.167547	0.0107809
chr11	5483992	5484092	12242941	0	-	0.53	(0.49,0.53]	chr11	946189	147	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	8	29	2	1.56396	1.7973050000000002	2.03065	0.0388812	0.0189484	0.158355	0.0958835
chr9	131144698	131144754	10495808	0	+	0.482143	(0.455,0.49]	chr9	793241	1	CDS_START	CDS_START:CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	43	2	1.66661	1.79719	1.92777	0.0286531	0.00826395	0.128685	0.0534766
chr7	156683178	156683278	9145630	0	-	0.3	(0.29,0.33]	chr7	699160	55	UTR3	UTR3:EXON_MRNA	LMBR1	ENSG00000105983.23	ENST00000353442.10:ENST00000448926.5:ENST00000415428.5:ENST00000454132.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	30	2	1.36549	1.7969400000000002	2.22839	0.042227	0.00486332	0.159355	0.0374757
chr3	49026323	49026419	4171693	0	-	0.59375	(0.59,1]	chr3	350225	1	CDS	CDS:UTR3:EXON_MRNA	IMPDH2	ENSG00000178035.13	ENST00000429182.6:ENST00000679117.1:ENST00000472328.2:ENST00000678724.1:ENST00000326739.9:ENST00000491610.2:ENST00000462980.2:ENST00000679339.1:ENST00000676708.1:ENST00000678603.1:ENST00000676607.1:ENST00000677480.1:ENST00000677991.1:ENST00000678920.1:ENST00000677010.1:ENST00000677205.1:ENST00000678001.1:ENST00000677519.1:ENST00000442157.2:ENST00000676627.1:ENST00000677168.1:ENST00000678177.1:ENST00000676864.1:ENST00000677185.1:ENST00000678085.1:ENST00000677344.1:ENST00000679019.1:ENST00000677740.1:ENST00000677108.1:ENST00000677593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	66	2	1.72824	1.7966600000000001	1.86508	0.0471232	0.00977669	0.179872	0.0611493
chr2	110637963	110638063	2837908	0	-	0.36	(0.33,0.36]	chr2	253271	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BUB1	ENSG00000169679.15	ENST00000302759.11:ENST00000535254.6:ENST00000409311.5:ENST00000671097.1:ENST00000478175.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	49	2	1.33645	1.796415	2.25638	0.0422403	6.53232e-4	0.167509	0.00808159
chr11	59802348	59802445	11960377	0	+	0.402062	(0.39,0.42]	chr11	915478	16	UTR3	UTR3:EXON_MRNA:INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000633708.1	protein_coding	protein_coding	protein_coding	protein_coding	8	24	2	1.40975	1.7956500000000002	2.18155	0.0492699	0.0283931	0.177329	0.127654
chr12	24814114	24814214	13255697	0	-	0.31	(0.29,0.33]	chr12	1038842	42	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	16	40	2	1.67976	1.79565	1.91154	0.023292	0.00340317	0.110214	0.0283456
chrX	103675970	103676065	19155325	0	-	0.326316	(0.29,0.33]	chrX	1629338	6	UTR3	UTR3:EXON_MRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5	protein_coding	protein_coding	protein_coding	protein_coding	56	141	2	1.27745	1.79564	2.31383	0.015824	1.53121e-5	0.0852295	3.91135e-4
chr2	152679055	152679109	2944292	0	-	0.37037	(0.36,0.39]	chr2	261626	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	PRPF40A	ENSG00000196504.19	ENST00000410080.8:ENST00000354363.11:ENST00000545856.7:ENST00000493468.7:ENST00000448428.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	26	2	1.66365	1.79494	1.92623	0.0345996	0.0166541	0.143631	0.0881353
chr2	229180761	229180861	3217939	0	-	0.62	(0.59,1]	chr2	283142	244	INTRON	INTRON	PID1	ENSG00000153823.19	ENST00000482518.6:ENST00000392055.8:ENST00000392054.7:ENST00000409462.1:ENST00000354069.6:ENST00000534952.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	47	311	2	0.974775	1.7947175	2.61466	0.0538176	2.8834e-5	0.198426	6.56635e-4
chr8	99893638	99893707	9970758	0	-	0.550725	(0.53,0.59]	chr8	752112	1	UTR5	UTR5:EXON_MRNA	COX6C	ENSG00000164919.11	ENST00000522934.5:ENST00000520517.5:ENST00000520468.7:ENST00000297564.6:ENST00000517682.6:ENST00000518171.5:ENST00000523016.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	77	2	1.63773	1.794705	1.95168	0.00781675	0.00319449	0.0519574	0.0267831
chr1	65255844	65255944	249856	0	+	0.45	(0.42,0.455]	chr1	28627	8	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	31	110	2	1.55768	1.79436	2.03104	0.0123956	2.53463e-4	0.070731	0.00381472
chr7	139080148	139080243	9102395	0	-	0.463158	(0.455,0.49]	chr7	694570	12	CDS	CDS:EXON_MRNA	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	6	21	2	1.61991	1.79433	1.96875	0.0480352	0.0447186	0.180552	0.166115
chr6	43011574	43011670	7154521	0	+	0.5	(0.49,0.53]	chr6	552378	4	UTR3	UTR3:EXON_MRNA	PPP2R5D	ENSG00000112640.16	ENST00000394110.7:ENST00000472118.5:ENST00000485511.6:ENST00000230402.10:ENST00000470467.5:ENST00000676174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	30	2	1.78308	1.794205	1.80533	0.0425234	0.0163404	0.167547	0.0867615
chr7	56061746	56061797	8290537	0	+	0.352941	(0.33,0.36]	chr7	631511	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000492618.5:ENST00000462133.5:ENST00000494736.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	47	2	1.77487	1.79419	1.81351	0.00929969	0.00520888	0.0586162	0.03848
chr12	54236664	54236764	13342893	0	-	0.38	(0.36,0.39]	chr12	1049602	53	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	11	31	2	1.39831	1.793495	2.18868	0.0520783	0.00436393	0.18423900000000001	0.0340502
chr17	1361954	1362008	16398553	0	-	0.388889	(0.36,0.39]	chr17	1334256	2	CDS	CDS:EXON_MRNA:INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	31	2	1.39831	1.793495	2.18868	0.0520783	0.00436393	0.18423900000000001	0.0340502
chr8	42405370	42405462	9305662	0	+	0.423913	(0.42,0.455]	chr8	712516	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	VDAC3	ENSG00000078668.14	ENST00000522572.5:ENST00000022615.9:ENST00000521158.5:ENST00000524291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	24	2	1.58956	1.793285	1.99701	0.0485703	0.0235036	0.175495	0.111072
chr21	8393235	8393333	18041462	0	+	0.459184	(0.455,0.49]	chr21	1530861	44	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	13115	41550	2	1.74533	1.79269	1.84005	1.07639e-4	4.13744e-5	0.00192473	9.72868e-4
chr5	139369443	139369535	6249408	0	+	0.380435	(0.36,0.39]	chr5	487048	8	UTR3	UTR3:EXON_MRNA	PAIP2	ENSG00000120727.13	ENST00000265192.9:ENST00000394795.6	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	1.72655	1.792645	1.85874	0.0415243	0.033108	0.164804	0.13754
chr21	42844176	42844275	18270797	0	-	0.464646	(0.455,0.49]	chr21	1549336	5	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.71363	1.7922150000000001	1.8708	0.0324007	0.0246293	0.134751	0.114941
chr1	26475546	26475646	109599	0	+	0.5	(0.49,0.53]	chr1	13089	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000463817.5:ENST00000619352.4:ENST00000467700.5:ENST00000466194.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	33	2	1.76393	1.7916699999999999	1.81941	0.0279906	0.0158768	0.123926	0.0854674
chr19	2269698	2269744	17195970	0	+	0.695652	(0.59,1]	chr19	1412839	1	CDS	CDS:EXON_MRNA	OAZ1:LLfos-48D6.2	ENSG00000104904.12:ENSG00000273734.1	ENST00000590943.6:ENST00000592787.2:ENST00000602676.6:ENST00000581150.6:ENST00000621615.1:ENST00000582888.8:ENST00000593012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	77	2	1.28809	1.791485	2.29488	0.0575363	0.00407435	0.197301	0.0324137
chr1	108700310	108700407	395176	0	+	0.360825	(0.36,0.39]	chr1	38104	4	UTR3	UTR3:EXON_MRNA	PRPF38B	ENSG00000134186.12	ENST00000370025.9:ENST00000370021.1	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	1.72333	1.791035	1.85874	0.0514027	0.0415243	0.18321	0.164804
chr1	229321206	229321304	1541521	0	-	0.367347	(0.36,0.39]	chr1	154303	3	UTR3	UTR3:EXON_MRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7	protein_coding	protein_coding	protein_coding	protein_coding	6	18	2	1.72333	1.791035	1.85874	0.0514027	0.0415243	0.18321	0.164804
chr1	30733341	30733438	915555	0	-	0.247423	[0,0.29]	chr1	95861	10	UTR3	UTR3:EXON_MRNA	LAPTM5	ENSG00000162511.8	ENST00000294507.4	protein_coding	protein_coding	protein_coding	protein_coding	13	28	2	1.72784	1.791015	1.85419	0.0182267	0.0136504	0.0945306	0.0760525
chr19	49492006	49492101	17370771	0	+	0.452632	(0.42,0.455]	chr19	1443140	3	UTR3	UTR3:EXON_MRNA	RPL13A	ENSG00000142541.18	ENST00000679106.1:ENST00000621674.4:ENST00000624069.3:ENST00000678510.1:ENST00000676477.1:ENST00000391857.9:ENST00000488946.1:ENST00000677048.1:ENST00000676556.1:ENST00000678187.1:ENST00000678713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	68	221	2	1.63241	1.790965	1.94952	0.00151961	1.53277e-4	0.0161859	0.00255498
chr6	49605367	49605464	7729593	0	-	0.278351	[0,0.29]	chr6	592928	3	UTR3	UTR3:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1	protein_coding	protein_coding	protein_coding	protein_coding	28	59	2	1.44452	1.7909000000000002	2.13728	0.0169578	5.86974e-4	0.0892242	0.0074278
chr11	65436281	65436381	11984706	0	+	0.56	(0.53,0.59]	chr11	920390	123	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	9	38	2	1.71269	1.79062	1.86855	0.0222391	0.0189167	0.104593	0.0934721
chr11	85974759	85974812	12525881	0	-	0.433962	(0.42,0.455]	chr11	972169	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5:ENST00000526907.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	54	2	1.67369	1.790155	1.90662	0.0164719	0.0031474	0.0873033	0.0265484
chr5	10400783	10400842	5875182	0	+	0.40678	(0.39,0.42]	chr5	461967	1	CDS	CDS:EXON_MRNA	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	74	2	1.74071	1.79003	1.83935	0.00679848	0.0017807	0.0464575	0.0172989
chr9	135945175	135945250	10887559	0	-	0.573333	(0.53,0.59]	chr9	826842	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000465873.5:ENST00000471163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	51	2	1.653	1.789885	1.92677	0.0274587	0.00482553	0.124024	0.0365844
chr9	127449609	127449708	10859994	0	-	0.494949	(0.49,0.53]	chr9	822668	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RPL12	ENSG00000197958.13	ENST00000361436.10:ENST00000497825.5:ENST00000536368.1:ENST00000497322.1:ENST00000483598.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	37	121	2	1.38277	1.78951	2.19625	0.00845398	2.88314e-4	0.0545869	0.00458687
chr7	25123205	25123304	8730810	0	-	0.373737	(0.36,0.39]	chr7	666449	47	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7	protein_coding	protein_coding	protein_coding	protein_coding	10	28	2	1.39831	1.7893	2.18029	0.0520783	0.0077769	0.18423900000000001	0.0517139
chr15	66500292	66500376	15352981	0	-	0.452381	(0.42,0.455]	chr15	1212558	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000564744.1:ENST00000564647.5:ENST00000563473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	229	729	2	1.73285	1.789215	1.84558	2.13676e-4	9.42138e-5	0.00359478	0.00171939
chr11	47466429	47466529	12386772	0	-	0.3	(0.29,0.33]	chr11	956932	6	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6	protein_coding	protein_coding	protein_coding	protein_coding	11	25	2	1.67976	1.7891249999999999	1.89849	0.023292	0.0197274	0.110214	0.0983378
chr22	16602715	16602814	18285733	0	+	0.414141	(0.39,0.42]	chr22	1551649	1	INTRON	INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	9	25	2	1.59111	1.788935	1.98676	0.0439902	0.0242602	0.163596	0.114087
chr11	62566805	62566873	12409080	0	-	0.632353	(0.59,1]	chr11	960952	1	CDS	CDS:UTR3:EXON_MRNA:PRIMIRNA	EEF1G:RP11-864I4.1:MIR6747	ENSG00000254772.10:ENSG00000255508.7:ENSG00000276102.1	ENST00000329251.5:ENST00000496634.2:ENST00000526409.5:ENST00000525340.5:ENST00000617193.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	15	101	2	1.3972	1.7889300000000001	2.18066	0.0274269	0.00401624	0.121604	0.0324137
chr19	3981999	3982052	17430238	0	-	0.584906	(0.53,0.59]	chr19	1454720	2	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000598182.5:ENST00000598436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	189	2	1.47294	1.7888	2.10466	0.00711378	1.06729e-4	0.0480944	0.00190903
chr12	54293108	54293199	13343351	0	-	0.593407	(0.59,1]	chr12	1049646	8	CDS	CDS:EXON_MRNA	NFE2	ENSG00000123405.14	ENST00000435572.7:ENST00000312156.8:ENST00000540264.2:ENST00000553070.5:ENST00000553198.1	protein_coding	protein_coding	protein_coding	protein_coding	13	91	2	1.28285	1.7887	2.29455	0.05189	0.00231247	0.193787	0.0211481
chr16	89560959	89561059	15810079	0	+	0.65	(0.59,1]	chr16	1258668	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL13	ENSG00000167526.14	ENST00000563749.1:ENST00000491523.5:ENST00000484610.5:ENST00000567815.5:ENST00000563270.5:ENST00000311528.10:ENST00000562879.5:ENST00000487034.5:ENST00000452368.7:ENST00000565571.5:ENST00000393099.3:ENST00000467736.5:ENST00000399461.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	53	377	2	1.50328	1.788485	2.07369	0.00740364	2.92846e-4	0.0493088	0.00430166
chrM	12906	13001	19377270	0	+	0.526316	(0.49,0.53]	chrM	1649828	7	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	32	111	2	1.65729	1.78822	1.91915	0.00342929	9.63015e-4	0.0292171	0.0107806
chr11	34099563	34099661	11905490	0	+	0.418367	(0.39,0.42]	chr11	909587	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000532820.5:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	61	2	1.67641	1.7880150000000001	1.89962	0.0175063	0.00175269	0.0918323	0.0171299
chr17	7513774	7513850	16105315	0	+	0.539474	(0.53,0.59]	chr17	1296799	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	POLR2A	ENSG00000181222.19	ENST00000617998.6:ENST00000674977.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	47	2	1.57718	1.78592	1.99466	0.0353812	0.0049448	0.146532	0.0367601
chr22	20951015	20951113	18300193	0	+	0.44898	(0.42,0.455]	chr22	1553647	13	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	46	168	2	1.18728	1.7859099999999999	2.38454	0.0251927	1.1862e-5	0.117089	3.1613e-4
chr7	6024579	6024672	8662410	0	-	0.27957	[0,0.29]	chr7	662531	10	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF2AK1	ENSG00000086232.13	ENST00000199389.11:ENST00000422786.1:ENST00000490523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	53	147	2	1.09304	1.7857949999999998	2.47855	0.0470617	2.73446e-6	0.179729	9.37966e-5
chr8	60208784	60208884	9844984	0	-	0.51	(0.49,0.53]	chr8	744869	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CA8	ENSG00000178538.10	ENST00000317995.5:ENST00000524872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	26	2	1.66773	1.785615	1.9035	0.0381288	0.0295204	0.149227	0.129773
chr6	53268921	53269016	7740171	0	-	0.336842	(0.33,0.36]	chr6	594337	17	UTR3	UTR3:EXON_MRNA	ELOVL5	ENSG00000012660.14	ENST00000370918.8:ENST00000542638.5:ENST00000304434.11	protein_coding	protein_coding	protein_coding	protein_coding	42	104	2	1.61477	1.78546	1.95615	0.00255586	6.99998e-4	0.0228498	0.00883235
chr8	38970140	38970230	9295234	0	+	0.4	(0.39,0.42]	chr8	711113	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000617275.5:ENST00000616834.1:ENST00000518939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	45	2	1.77432	1.7851149999999998	1.79591	0.0100237	0.0082071	0.0622514	0.0539443
chr19	28614830	28614929	17280943	0	+	0.414141	(0.39,0.42]	chr19	1428124	25	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1	lncRNA	lncRNA	lncRNA	lncRNA	19	55	2	1.43305	1.78505	2.13705	0.0197317	0.00175575	0.095966	0.0171455
chr1	11023426	11023525	42055	0	+	0.515152	(0.49,0.53]	chr1	5026	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	41	2	1.26856	1.785015	2.30147	0.0541847	0.0033367	0.199653	0.0278556
chr7	144646924	144647011	9120712	0	-	0.298851	(0.29,0.33]	chr7	696679	4	INTRON	INTRON	TPK1	ENSG00000196511.14	ENST00000360057.7:ENST00000482940.5:ENST00000538212.6:ENST00000378099.7:ENST00000378098.8:ENST00000547966.5:ENST00000639328.1:ENST00000551062.5:ENST00000552881.1:ENST00000481645.5:ENST00000489798.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	47	112	2	1.78274	1.784495	1.78625	0.00235019	6.68359e-4	0.0222173	0.00820018
chr7	123790604	123790657	9046886	0	-	0.490566	(0.49,0.53]	chr7	690673	1	EXON_SMALL	EXON_SMALL	RNU6-11P	ENSG00000201104.1	ENST00000364234.1	snRNA	snRNA	snRNA	snRNA	120	447	2	1.541	1.78429	2.02758	0.00215629	3.11752e-5	0.0208669	6.97306e-4
chr11	63758291	63758391	11976851	0	+	0.39	(0.36,0.39]	chr11	918384	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000540798.5:ENST00000537981.5:ENST00000377819.10:ENST00000536011.5:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	52	2	1.26258	1.78422	2.30586	0.0407979	7.0243e-4	0.163285	0.00848325
chr4	55636245	55636298	5433797	0	-	0.716981	(0.59,1]	chr4	434927	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NMU	ENSG00000109255.11	ENST00000511469.5:ENST00000264218.7:ENST00000505262.5:ENST00000507338.1:ENST00000515325.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	100	2	1.27298	1.78393	2.29488	0.0352651	0.00407435	0.142212	0.0324137
chr2	135916225	135916298	2898410	0	-	0.452055	(0.42,0.455]	chr2	258609	1	CDS	CDS:EXON_MRNA	DARS1	ENSG00000115866.11	ENST00000264161.9:ENST00000422708.3	protein_coding	protein_coding	protein_coding	protein_coding	13	44	2	1.63684	1.783795	1.93075	0.0246118	0.0048704	0.114882	0.0366486
chr2	96884467	96884566	2792439	0	-	0.575758	(0.53,0.59]	chr2	249295	56	INTRON	INTRON	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5:ENST00000494172.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	22	2	1.65775	1.7836400000000001	1.90953	0.0573191	0.0517711	0.196623	0.193577
chr21	44326211	44326264	18140172	0	+	0.54717	(0.53,0.59]	chr21	1539050	2	CDS	CDS:UTR3:EXON_MRNA	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5:ENST00000498841.5:ENST00000467315.5:ENST00000460521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	22	2	1.65775	1.7836400000000001	1.90953	0.0573191	0.0517711	0.196623	0.193577
chr6	67888943	67889042	7784150	0	-	0.606061	(0.59,1]	chr6	596229	21	EXON_LNCRNA	EXON_LNCRNA	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	43	298	2	1.58234	1.7835800000000002	1.98482	0.00553738	7.56478e-4	0.0416526	0.00904305
chr7	26196556	26196651	8734097	0	-	0.410526	(0.39,0.42]	chr7	666668	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	64	183	2	1.31195	1.7833999999999999	2.25485	0.00790757	3.20807e-5	0.0523592	7.11485e-4
chr8	116847499	116847599	10035164	0	-	0.42	(0.39,0.42]	chr8	755411	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7:ENST00000523986.5:ENST00000517749.1:ENST00000518055.1	protein_coding	protein_coding	protein_coding	protein_coding	10	31	2	1.65092	1.782905	1.91489	0.0216584	0.0197788	0.103121	0.0960939
chr11	60070723	60070821	11961719	0	+	0.346939	(0.33,0.36]	chr11	915694	6	UTR3	UTR3:EXON_MRNA	MS4A3	ENSG00000149516.14	ENST00000358152.6:ENST00000278865.8:ENST00000528952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	42	2	1.63696	1.7828650000000001	1.92877	0.0194161	0.00391839	0.0944741	0.0314356
chr2	112646739	112646828	2001740	0	+	0.359551	(0.33,0.36]	chr2	190002	3	UTR5	UTR5:EXON_MRNA	SLC20A1	ENSG00000144136.11	ENST00000272542.8	protein_coding	protein_coding	protein_coding	protein_coding	16	42	2	1.63696	1.7828650000000001	1.92877	0.0194161	0.00391839	0.0944741	0.0314356
chr1	225419262	225419357	1528241	0	-	0.473684	(0.455,0.49]	chr1	152828	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	LBR	ENSG00000143815.15	ENST00000272163.9:ENST00000338179.6:ENST00000651341.1:ENST00000487054.1:ENST00000425080.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	37	2	1.76168	1.782865	1.80405	0.017721400000000002	0.0140234	0.0918323	0.076809
chr12	9239898	9239985	13198869	0	-	0.574713	(0.53,0.59]	chr12	1034443	5	PRIMIRNA	PRIMIRNA:INTRON	A2MP1:MIR1244-3	ENSG00000256069.7:ENSG00000283429.1	ENST00000566278.6:ENST00000635744.1	miRNA	transcribed_unprocessed_pseudogene	miRNA:transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene:primary_miRNA	20	80	2	1.64014	1.78274	1.92534	0.0066779	0.0036404	0.0464344	0.0306383
chrX	103676831	103676927	19155334	0	-	0.552083	(0.53,0.59]	chrX	1629340	7	CDS	CDS:EXON_MRNA:EXON_LNCRNA	MORF4L2	ENSG00000123562.18	ENST00000360458.5:ENST00000441076.7:ENST00000433176.6:ENST00000451301.5:ENST00000434230.5:ENST00000418819.5:ENST00000442614.5:ENST00000492116.5:ENST00000422355.5:ENST00000474653.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	46	2	1.4703	1.7826	2.0949	0.0386603	0.00477326	0.149227	0.0368489
chr12	6748455	6748547	13188353	0	-	0.423913	(0.42,0.455]	chr12	1032664	6	UTR3	UTR3:EXON_MRNA	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000435120.5	protein_coding	protein_coding	protein_coding	protein_coding	22	69	2	1.5219	1.782475	2.04305	0.0092594	0.00223689	0.0585245	0.0212908
chr19	17403229	17403326	17495786	0	-	0.556701	(0.53,0.59]	chr19	1467242	4	UTR3	UTR3:EXON_MRNA	BST2	ENSG00000130303.14	ENST00000252593.7:ENST00000527220.2:ENST00000533098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	34	2	1.77634	1.7824300000000002	1.78852	0.025972	0.0249781	0.117079	0.116495
chr4	82353959	82354056	5493462	0	-	0.319588	(0.29,0.33]	chr4	439963	16	UTR3	UTR3:EXON_MRNA	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	41	2	1.36268	1.782285	2.20189	0.0365909	0.00113851	0.145024	0.0129849
chr15	43194938	43195035	14895101	0	+	0.350515	(0.33,0.36]	chr15	1170890	2	UTR3	UTR3:EXON_MRNA	CCNDBP1	ENSG00000166946.14	ENST00000566515.5:ENST00000300213.9:ENST00000569745.5:ENST00000563065.5:ENST00000565296.5:ENST00000568507.5:ENST00000444658.7:ENST00000565958.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	25	2	1.74061	1.7822749999999998	1.82394	0.0494504	0.0162558	0.18557	0.0866586
chr11	119095294	119095394	12626603	0	-	0.74	(0.59,1]	chr11	979848	1	CDS_START	CDS_START:CDS:EXON_MRNA	H2AX	ENSG00000188486.3	ENST00000530167.1:ENST00000375167.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	71	2	1.69143	1.7822	1.87297	0.0308113	0.0153347	0.130016	0.0829195
chr1	205713813	205713912	1461993	0	-	0.40404	(0.39,0.42]	chr1	147460	11	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	37	111	2	1.76183	1.781955	1.80208	0.00239084	0.00101786	0.0225356	0.0113227
chr14	64459835	64459935	14344256	0	+	0.41	(0.39,0.42]	chr14	1121409	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MTHFD1	ENSG00000100714.17	ENST00000545908.6:ENST00000554768.6:ENST00000652179.1:ENST00000652337.1:ENST00000650853.1:ENST00000651537.1:ENST00000652509.1:ENST00000651891.1:ENST00000556284.1:ENST00000554353.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	36	2	1.54703	1.7819	2.01677	0.0235818	0.0167468	0.111323	0.0885385
chr17	81511187	81511269	16707873	0	-	0.634146	(0.59,1]	chr17	1377335	1	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	270	2	1.67092	1.7817349999999998	1.89255	0.00398763	0.00143943	0.0323258	0.0147046
chr1	32172883	32172982	127037	0	+	0.414141	(0.39,0.42]	chr1	15636	21	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000471599.5:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	12	36	2	1.44483	1.781525	2.11822	0.0357586	0.005418	0.144114	0.0409315
chr19	34400981	34401076	17300577	0	+	0.410526	(0.39,0.42]	chr19	1429899	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GPI:RP11-618P17.4	ENSG00000105220.17:ENSG00000266953.6	ENST00000415930.8:ENST00000356487.11:ENST00000592740.5:ENST00000606020.1	protein_coding	protein_coding	protein_coding	protein_coding	26	71	2	1.27934	1.78135	2.28336	0.0221419	5.28864e-4	0.105595	0.006804
chrX	24062415	24062494	18616529	0	+	0.443038	(0.42,0.455]	chrX	1589805	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	55	2	1.39816	1.78106	2.16396	0.0276205	0.00149934	0.124704	0.0152367
chr2	167933906	167934005	2998969	0	-	0.50505	(0.49,0.53]	chr2	265456	328	INTRON	INTRON	B3GALT1-AS1	ENSG00000235335.3	ENST00000430546.2:ENST00000657553.1:ENST00000670221.1:ENST00000436982.2	lncRNA	lncRNA	lncRNA	lncRNA	7	25	2	1.65423	1.78054	1.90685	0.0534351	0.0288442	0.184995	0.129096
chr17	75778590	75778642	16684891	0	-	0.557692	(0.53,0.59]	chr17	1373460	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8:ENST00000593254.1:ENST00000586518.1:ENST00000592643.5:ENST00000591890.5:ENST00000589949.1:ENST00000587560.5:ENST00000589599.5:ENST00000586607.5:ENST00000586270.5:ENST00000587171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	34	2	1.70379	1.780075	1.85636	0.0330081	0.0197135	0.138711	0.0983378
chr10	17229799	17229892	10938772	0	+	0.634409	(0.59,1]	chr10	832983	4	CDS	CDS:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	90	2	1.41508	1.779855	2.14463	0.0340591	0.00445434	0.141491	0.0340903
chr2	206025644	206025697	2337469	0	+	0.45283	(0.42,0.455]	chr2	211037	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000207386.1	ENST00000384656.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	177	540	2	1.39094	1.779655	2.16837	0.00255324	7.97317e-6	0.0228271	2.49607e-4
chr8	116863194	116863259	10035336	0	-	0.430769	(0.42,0.455]	chr8	755474	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RAD21	ENSG00000164754.15	ENST00000297338.7:ENST00000520992.5:ENST00000517485.5:ENST00000523547.1:ENST00000519837.5:ENST00000522699.1:ENST00000519469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	24	2	1.69266	1.778895	1.86513	0.0357107	0.0354788	0.147298	0.143019
chr1	29039253	29039339	120816	0	+	0.44186	(0.42,0.455]	chr1	14659	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	52	2	1.67858	1.778575	1.87857	0.00949283	0.00777101	0.0596168	0.0508528
chrX	71300392	71300486	18730900	0	+	0.521277	(0.49,0.53]	chrX	1598445	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	107	369	2	1.71119	1.777785	1.84438	6.08266e-4	1.66714e-4	0.00818575	0.00271792
chr17	22204280	22204377	16168814	0	+	0.597938	(0.59,1]	chr17	1304328	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	UBBP4	ENSG00000263563.6	ENST00000648259.1:ENST00000584755.1:ENST00000583708.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	13	94	2	1.61978	1.77735	1.93492	0.0317775	0.00436548	0.134199	0.0335552
chr11	5424256	5424356	12242341	0	-	0.39	(0.36,0.39]	chr11	946181	770	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	11	31	2	1.66035	1.77713	1.89391	0.026191	0.0121625	0.119224	0.0701019
chr11	64317448	64317526	12417469	0	-	0.641026	(0.59,1]	chr11	962532	1	CDS_START	CDS_START:CDS:EXON_MRNA	TRMT112	ENSG00000173113.7	ENST00000544844.6:ENST00000535750.5:ENST00000535126.1:ENST00000308774.6:ENST00000539854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	91	2	1.26142	1.7769050000000002	2.29239	0.0544525	0.00247678	0.188452	0.0231293
chr5	179833586	179833684	6415271	0	+	0.5	(0.49,0.53]	chr5	499331	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	9	33	2	1.77058	1.77683	1.78308	0.0425234	0.0133397	0.167547	0.0743125
chr11	63758791	63758891	11976856	0	+	0.52	(0.49,0.53]	chr11	918385	5	UTR3	UTR3:EXON_MRNA	RTN3	ENSG00000133318.14	ENST00000341307.6:ENST00000356000.7:ENST00000339997.8:ENST00000537981.5:ENST00000377819.10:ENST00000354497.4	protein_coding	protein_coding	protein_coding	protein_coding	16	56	2	1.66165	1.77663	1.89161	0.010083	0.00594773	0.0625006	0.0430241
chr2	47799884	47799984	1788200	0	+	0.43	(0.42,0.455]	chr2	172666	10	CDS	CDS:UTR3:UTR5:EXON_MRNA	MSH6	ENSG00000116062.17	ENST00000652107.1:ENST00000445503.5:ENST00000622629.4:ENST00000614496.4:ENST00000234420.11:ENST00000673637.1:ENST00000616033.4:ENST00000540021.6:ENST00000538136.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	28	2	1.71996	1.7753	1.83064	0.0542346	0.0149305	0.199653	0.081162
chrX	92676692	92676779	19142690	0	-	0.402299	(0.39,0.42]	chrX	1627986	3	EXON_PSEUDO	EXON_PSEUDO	RPL26P36	ENSG00000225912.1	ENST00000443413.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	22	72	2	1.49547	1.77498	2.05449	0.0235423	5.80446e-4	0.111247	0.00735454
chr12	46372508	46372596	13314444	0	-	0.397727	(0.39,0.42]	chr12	1043646	1	UTR5	UTR5:EXON_MRNA	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000553252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	35	2	1.75252	1.7742149999999999	1.79591	0.0297286	0.0082071	0.130016	0.0539443
chr1	168249926	168250026	526568	0	+	0.46	(0.455,0.49]	chr1	56538	75	UTR3	UTR3:EXON_MRNA	SFT2D2	ENSG00000213064.10	ENST00000271375.7	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.62042	1.774095	1.92777	0.0320389	0.0286531	0.133433	0.128685
chr6	113971074	113971157	7903256	0	-	0.674699	(0.59,1]	chr6	605468	3	UTR5	UTR5:EXON_MRNA:INTRON	HDAC2	ENSG00000196591.12	ENST00000519065.6:ENST00000368632.6:ENST00000522371.5:ENST00000521163.5:ENST00000521233.1:ENST00000520895.5:ENST00000524334.1:ENST00000520170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	51	2	1.73729	1.773975	1.81066	0.0369806	0.0303312	0.145401	0.129874
chr1	36304986	36305079	141735	0	+	0.344086	(0.33,0.36]	chr1	17609	6	UTR3	UTR3:EXON_MRNA	THRAP3	ENSG00000054118.15	ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	19	47	2	1.47609	1.7739599999999998	2.07183	0.0151443	0.00373558	0.0822216	0.0312668
chr6	7287812	7287912	7586870	0	-	0.4	(0.39,0.42]	chr6	578692	68	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	64	2	1.5027	1.773785	2.04487	0.0114358	0.00179434	0.0670567	0.0183262
chr17	59694531	59694628	16295603	0	+	0.453608	(0.42,0.455]	chr17	1321774	8	UTR3	UTR3:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000269122.8:ENST00000498711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	147	2	1.52747	1.773655	2.01984	0.00298916	3.96201e-4	0.0255748	0.00587914
chr1	77963644	77963715	1112827	0	-	0.577465	(0.53,0.59]	chr1	111890	2	CDS	CDS:EXON_MRNA	FUBP1	ENSG00000162613.17	ENST00000370768.7:ENST00000294623.8:ENST00000370767.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	34	2	1.60161	1.77299	1.94437	0.0451605	0.0143432	0.167576	0.0783202
chr1	161518840	161518939	500538	0	+	0.555556	(0.53,0.59]	chr1	54251	8	UTR3	UTR3:EXON_MRNA:INTRON	FCGR2A:RP11-25K21.6	ENSG00000143226.15:ENSG00000273112.1	ENST00000271450.12:ENST00000467525.5:ENST00000537821.2:ENST00000459885.1:ENST00000491841.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	8	34	2	1.60161	1.77299	1.94437	0.0451605	0.0143432	0.167576	0.0783202
chr9	112219496	112219595	10802877	0	-	0.393939	(0.39,0.42]	chr9	818409	19	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	29	98	2	1.42924	1.772765	2.11629	0.0227185	0.00017596500000000001	0.107637	0.00285354
chr11	118754711	118754811	12625477	0	-	0.44	(0.42,0.455]	chr11	979529	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1:ENST00000526070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	50	2	1.50362	1.77245	2.04128	0.0145189	0.00699169	0.0790883	0.0475909
chr1	96448218	96448318	366409	0	+	0.53	(0.49,0.53]	chr1	35865	14	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	76	244	2	1.39502	1.7718099999999999	2.1486	0.00394471	6.613e-5	0.0316151	0.00141177
chr1	93361534	93361633	356116	0	+	0.252525	[0,0.29]	chr1	35144	10	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	8	18	2	1.72806	1.771555	1.81505	0.0409713	0.0359089	0.163285	0.144663
chr15	55181460	55181554	15292452	0	-	0.414894	(0.39,0.42]	chr15	1207009	8	UTR3	UTR3:EXON_MRNA	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000677267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	38	2	1.50406	1.77111	2.03816	0.0413581	0.00423834	0.164391	0.0330004
chr8	144791991	144792029	10150954	0	-	0.605263	(0.59,1]	chr8	764132	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	RPL8:MIR6850	ENSG00000161016.18:ENSG00000283764.1	ENST00000531975.5:ENST00000529163.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5:ENST00000532702.1:ENST00000525232.5:ENST00000612162.1:ENST00000531767.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	27	188	2	1.61003	1.77006	1.93009	0.0091118	0.00171919	0.0577869	0.0168293
chr12	7920816	7920915	13193171	0	-	0.262626	[0,0.29]	chr12	1033481	17	UTR3	UTR3:EXON_MRNA	SLC2A3	ENSG00000059804.16	ENST00000075120.12:ENST00000486749.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	35	2	1.36289	1.7699099999999999	2.17693	0.0417087	0.00246711	0.165482	0.0222554
chr8	116846128	116846226	10035150	0	-	0.316327	(0.29,0.33]	chr8	755410	3	UTR3	UTR3:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7	protein_coding	protein_coding	protein_coding	protein_coding	17	44	2	1.62619	1.769885	1.91358	0.0358231	0.00212848	0.147298	0.0198744
chr6	43567168	43567261	7708546	0	-	0.451613	(0.42,0.455]	chr6	591596	1	CDS	CDS:EXON_MRNA	XPO5	ENSG00000124571.18	ENST00000265351.12	protein_coding	protein_coding	protein_coding	protein_coding	8	27	2	1.67452	1.769825	1.86513	0.0357107	0.0264395	0.147298	0.117445
chr19	1258453	1258552	17192162	0	+	0.393939	(0.39,0.42]	chr19	1411881	13	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1:ENST00000591446.6	protein_coding	protein_coding	protein_coding	protein_coding	13	38	2	1.26453	1.76978	2.27503	0.0548372	0.0025739	0.189511	0.0235767
chr10	7807662	7807738	10916067	0	+	0.381579	(0.36,0.39]	chr10	831364	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	42	2	1.57061	1.7690000000000001	1.96739	0.0228883	0.00425708	0.108345	0.0331426
chr1	32176264	32176364	127071	0	+	0.31	(0.29,0.33]	chr1	15636	55	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	18	42	2	1.51736	1.768345	2.01933	0.02428	0.0025696	0.114157	0.0229363
chr1	26731513	26731604	110498	0	+	0.637363	(0.59,1]	chr1	13259	5	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	13	95	2	1.53145	1.767455	2.00346	0.0416919	0.0032027	0.165444	0.0268416
chr10	68977528	68977608	11093348	0	+	0.5	(0.49,0.53]	chr10	843282	1	CDS	CDS:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	14	53	2	1.41373	1.7669799999999998	2.12023	0.0487081	0.00133447	0.183028	0.0139317
chr16	88804605	88804667	15807272	0	+	0.629032	(0.59,1]	chr16	1258110	2	CDS	CDS:EXON_MRNA	CDT1	ENSG00000167513.9	ENST00000301019.9:ENST00000562747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	61	2	1.36874	1.7664900000000001	2.16424	0.0535348	0.0123032	0.185328	0.0705839
chr17	50381334	50381431	16585106	0	-	0.43299	(0.42,0.455]	chr17	1363112	2	UTR3	UTR3:EXON_MRNA:INTRON	LRRC59	ENSG00000108829.10	ENST00000503118.2:ENST00000225972.8	protein_coding	protein_coding	protein_coding	protein_coding	36	116	2	1.53693	1.766015	1.9951	0.00620663	4.03723e-4	0.0441703	0.00550292
chr6	67884973	67885073	7784110	0	-	0.44	(0.42,0.455]	chr6	596226	7	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	52	169	2	1.59565	1.76585	1.93605	0.00308639	2.40074e-4	0.0273777	0.00363578
chr17	75779713	75779780	16684909	0	-	0.626866	(0.59,1]	chr17	1373471	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	H3-3B	ENSG00000132475.10	ENST00000254810.8:ENST00000593254.1:ENST00000586518.1:ENST00000592643.5:ENST00000591890.5:ENST00000589949.1:ENST00000589599.5:ENST00000586607.5:ENST00000587171.1:ENST00000589417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	159	2	1.71751	1.765215	1.81292	0.00739725	0.00473676	0.0492519	0.0366383
chr7	92614246	92614345	8924982	0	-	0.30303	(0.29,0.33]	chr7	681136	95	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	11	26	2	1.62619	1.76459	1.90299	0.0358231	0.0126076	0.147298	0.0719957
chr1	1786463	1786561	829675	0	-	0.387755	(0.36,0.39]	chr1	82929	13	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	21	56	2	1.36002	1.7641850000000001	2.1683500000000002	0.0255214	0.0010574	0.117089	0.0117341
chr17	76734796	76734893	16692105	0	-	0.340206	(0.33,0.36]	chr17	1375073	8	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF2	ENSG00000161547.17	ENST00000392485.2:ENST00000359995.10:ENST00000585202.5:ENST00000582449.5:ENST00000586778.1:ENST00000452355.7:ENST00000589919.1:ENST00000508921.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	27	2	1.6133	1.763955	1.91461	0.0264235	0.0179419	0.120071	0.0939469
chr12	93401570	93401670	13019169	0	+	0.34	(0.33,0.36]	chr12	1013446	23	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	40	103	2	1.68173	1.7639	1.84607	0.00405251	6.5371e-4	0.0324137	0.0080872200000000009
chr19	11147182	11147282	17461168	0	-	0.61	(0.59,1]	chr19	1461292	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	SPC24	ENSG00000161888.11	ENST00000585567.5:ENST00000592540.5:ENST00000591396.5:ENST00000592967.5:ENST00000423327.2:ENST00000586708.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	44	2	1.67735	1.7637749999999999	1.8502	0.0534288	0.0334531	0.184995	0.140296
chr22	20566553	20566641	18298986	0	+	0.681818	(0.59,1]	chr22	1553478	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	107	2	1.50163	1.763615	2.0256	0.0299446	0.0028918	0.129773	0.0248106
chr12	120198926	120199000	13579755	0	-	0.635135	(0.59,1]	chr12	1068811	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5:ENST00000548495.5:ENST00000550423.5:ENST00000551914.1:ENST00000548551.5:ENST00000549242.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	125	2	1.41585	1.763385	2.11092	0.0264363	0.00193305	0.120071	0.0184698
chr22	21788322	21788388	18442639	0	-	0.318182	(0.29,0.33]	chr22	1572527	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	10	24	2	1.71387	1.7631649999999999	1.81246	0.0355849	0.0178891	0.147262	0.0937046
chr11	61801415	61801515	12405915	0	-	0.38	(0.36,0.39]	chr11	960580	19	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	27	74	2	1.11171	1.76305	2.41439	0.0483403	1.15482e-4	0.181692	0.00204405
chr14	55766735	55766833	14301042	0	+	0.489796	(0.455,0.49]	chr14	1117939	6	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	RP11-813I20.2:RPL13AP3	ENSG00000258784.1:ENSG00000177350.6	ENST00000554458.1:ENST00000487479.1:ENST00000494676.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript:transcribed_processed_pseudogene	17	56	2	1.62813	1.7626	1.89707	0.0152764	0.0033244	0.0828908	0.0277689
chr17	29260838	29260938	16490877	0	-	0.32	(0.29,0.33]	chr17	1348880	51	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	11	26	2	1.66431	1.7625	1.86069	0.0225076	0.021654	0.10505	0.103926
chr20	34280554	34280650	17946660	0	-	0.46875	(0.455,0.49]	chr20	1519947	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RP4-785G19.5:AHCY	ENSG00000250917.1:ENSG00000101444.13	ENST00000512005.1:ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	9	30	2	1.62042	1.762375	1.90433	0.0320389	0.0185466	0.133433	0.0932453
chr16	1964625	1964697	15823842	0	-	0.597222	(0.59,1]	chr16	1261875	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000529806.5:ENST00000527302.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	118	2	1.61282	1.7620749999999998	1.91133	0.014483	0.00484573	0.0790431	0.0366328
chr5	96773612	96773709	6117349	0	+	0.340206	(0.33,0.36]	chr5	478607	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CAST	ENSG00000153113.24	ENST00000395812.6:ENST00000674702.1:ENST00000675179.1:ENST00000674984.1:ENST00000675663.1:ENST00000675267.1:ENST00000675266.1:ENST00000395813.5:ENST00000309190.9:ENST00000674587.1:ENST00000675033.1:ENST00000675479.1:ENST00000437034.6:ENST00000325674.11:ENST00000675185.1:ENST00000510098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	19	2	1.69981	1.7618749999999999	1.82394	0.0494504	0.0370662	0.18557	0.145667
chr11	85958257	85958355	12525712	0	-	0.357143	(0.33,0.36]	chr11	972155	12	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	31	82	2	1.27209	1.761735	2.25138	0.027987	1.31327e-4	0.126307	0.00226596
chr2	44319169	44319267	2624125	0	-	0.377551	(0.36,0.39]	chr2	236318	17	UTR3	UTR3:EXON_MRNA	PREPL	ENSG00000138078.16	ENST00000425263.5:ENST00000409411.6:ENST00000426481.5:ENST00000541738.5:ENST00000409957.5:ENST00000409936.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	20	2	1.66836	1.761625	1.85489	0.0474647	0.0350721	0.17993	0.141601
chr11	57816504	57816602	11953241	0	+	0.418367	(0.39,0.42]	chr11	914890	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1:ENST00000525821.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	31	2	1.6514	1.761295	1.87119	0.0373134	0.0166585	0.152293	0.0881517
chr2	182925501	182925601	3059902	0	-	0.3	(0.29,0.33]	chr2	271262	165	UTR3	UTR3:EXON_MRNA	NCKAP1	ENSG00000061676.15	ENST00000361354.9:ENST00000360982.2	protein_coding	protein_coding	protein_coding	protein_coding	10	22	2	1.28031	1.761285	2.24226	0.0557552	0.0306054	0.191866	0.130226
chr11	59806277	59806346	12401417	0	-	0.405797	(0.39,0.42]	chr11	959576	3	UTR3	UTR3:EXON_MRNA	MRPL16	ENSG00000166902.5	ENST00000300151.5	protein_coding	protein_coding	protein_coding	protein_coding	8	25	2	1.65028	1.760735	1.87119	0.0373134	0.0292034	0.152293	0.128158
chr14	103912570	103912665	14797141	0	-	0.463158	(0.455,0.49]	chr14	1159806	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ATP5MJ	ENSG00000156411.10	ENST00000286953.8:ENST00000554880.5:ENST00000555030.5:ENST00000414262.6:ENST00000553430.5:ENST00000557040.5:ENST00000554287.1:ENST00000553449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	41	2	1.68956	1.760525	1.83149	0.0381365	0.00589014	0.155455	0.0425608
chr5	154814388	154814485	6315014	0	+	0.484536	(0.455,0.49]	chr5	492515	4	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	20	68	2	1.46838	1.7603499999999999	2.05232	0.0239373	8.84019e-4	0.112627	0.0101597
chr16	70548369	70548442	15729915	0	+	0.520548	(0.49,0.53]	chr16	1252941	1	CDS	CDS:EXON_MRNA	SF3B3	ENSG00000189091.13	ENST00000302516.10:ENST00000572365.1:ENST00000567635.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	29	2	1.75643	1.76018	1.76393	0.0293825	0.0279906	0.129773	0.123926
chr21	42849027	42849126	18270846	0	-	0.636364	(0.59,1]	chr21	1549336	54	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	9	66	2	1.67735	1.75997	1.84259	0.0534288	0.011062	0.184995	0.0653511
chr2	152672458	152672540	2944221	0	-	0.353659	(0.33,0.36]	chr2	261600	1	CDS	CDS:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	8	21	2	1.69981	1.759935	1.82006	0.0370662	0.0323353	0.145667	0.135977
chrX	48957173	48957272	19064032	0	-	0.818182	(0.59,1]	chrX	1620661	3	CDS	CDS:EXON_MRNA:INTRON	OTUD5	ENSG00000068308.14	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000610466.4:ENST00000428668.2	protein_coding	protein_coding	protein_coding	protein_coding	7	50	2	1.61229	1.759905	1.90752	0.0434296	0.0282297	0.162491	0.127287
chr14	34740733	34740833	14578588	0	-	0.59	(0.53,0.59]	chr14	1142143	5	EXON_PSEUDO	EXON_PSEUDO	RPL12P6	ENSG00000243824.1	ENST00000495231.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	71	2	1.63773	1.7597299999999998	1.88173	0.00781675	0.00594236	0.0519574	0.0428562
chr21	33552017	33552116	18101177	0	+	0.464646	(0.455,0.49]	chr21	1534527	14	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	58	2	1.71034	1.759675	1.80901	0.00693404	0.00673396	0.0473133	0.0468111
chr3	156540538	156540637	4538637	0	-	0.424242	(0.42,0.455]	chr3	376076	11	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	12	39	2	1.43354	1.7595450000000001	2.08555	0.0450749	0.00369743	0.167319	0.030971
chr3	38254287	38254386	3420129	0	+	0.393939	(0.39,0.42]	chr3	297237	15	UTR3	UTR3:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000311806.8	protein_coding	protein_coding	protein_coding	protein_coding	13	38	2	1.49151	1.75907	2.02663	0.0209416	0.0130764	0.101311	0.0729985
chr1	204404445	204404541	1457420	0	-	0.40625	(0.39,0.42]	chr1	146819	12	UTR3	UTR3:EXON_MRNA	PPP1R15B	ENSG00000158615.9	ENST00000367188.5	protein_coding	protein_coding	protein_coding	protein_coding	10	28	2	1.40371	1.7588499999999998	2.11399	0.0464207	0.014455	0.17732	0.0787564
chr7	92134264	92134364	8922316	0	-	0.69	(0.59,1]	chr7	680686	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_PROX:INTRON	CYP51A1:CTB-161K23.4:CTB-161K23.3	ENSG00000001630.17:ENSG00000285772.1:ENSG00000285953.1	ENST00000003100.13:ENST00000422722.1:ENST00000450723.5:ENST00000650585.1:ENST00000435873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	50	2	1.55494	1.758795	1.96265	0.0511194	0.0238491	0.182342	0.112466
chr19	3977427	3977518	17430184	0	-	0.626374	(0.59,1]	chr19	1454691	1	CDS	CDS:EXON_MRNA:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	52	341	2	1.56658	1.758445	1.95031	0.00391385	0.00118383	0.0314356	0.0132984
chr1	23322955	23323055	894840	0	-	0.39	(0.36,0.39]	chr1	92847	9	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.4483	1.7583099999999998	2.06832	0.0360788	0.0122123	0.145024	0.0702898
chr8	41655340	41655436	9806274	0	-	0.385417	(0.36,0.39]	chr8	741510	23	UTR3	UTR3:EXON_MRNA	ANK1	ENSG00000029534.21	ENST00000347528.8:ENST00000265709.13:ENST00000289734.13:ENST00000522543.5:ENST00000522231.5:ENST00000520299.5:ENST00000314214.12:ENST00000645531.1	protein_coding	protein_coding	protein_coding	protein_coding	11	30	2	1.4483	1.7583099999999998	2.06832	0.0360788	0.0122123	0.145024	0.0702898
chr11	17074407	17074466	12295014	0	-	0.423729	(0.42,0.455]	chr11	950285	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPS13	ENSG00000110700.7	ENST00000525634.6:ENST00000526895.5:ENST00000228140.6:ENST00000531908.5:ENST00000531008.5:ENST00000525828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	33	104	2	1.67291	1.7579099999999999	1.84291	0.00308697	0.0020594	0.0273817	0.0194301
chr18	50392727	50392823	16871588	0	+	0.5	(0.49,0.53]	chr18	1389742	6	UTR3	UTR3:EXON_MRNA	SKA1	ENSG00000154839.10	ENST00000285116.8	protein_coding	protein_coding	protein_coding	protein_coding	14	45	2	1.25893	1.75765	2.25637	0.0425001	0.00420813	0.160303	0.0329484
chr6	26055974	26056062	7646947	0	-	0.625	(0.59,1]	chr6	582503	2	CDS	CDS:EXON_MRNA	H1-2	ENSG00000187837.4	ENST00000343677.4	protein_coding	protein_coding	protein_coding	protein_coding	104	704	2	1.56063	1.757425	1.95422	0.00327394	3.45076e-4	0.0282881	0.00486113
chr9	37592432	37592532	10645903	0	-	0.56	(0.53,0.59]	chr9	805796	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RP11-613M10.8:TOMM5:RP11-613M10.9	ENSG00000256966.6:ENSG00000175768.13:ENSG00000255872.3	ENST00000537239.2:ENST00000540941.1:ENST00000540557.1:ENST00000321301.7:ENST00000377773.9:ENST00000401811.3:ENST00000544379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	53	2	1.66703	1.757415	1.8478	0.0193523	0.0069346	0.0969734	0.0473133
chr16	84565691	84565787	16062246	0	-	0.34375	(0.33,0.36]	chr16	1290246	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000567278.1:ENST00000564057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	28	2	1.57515	1.75719	1.93923	0.0299562	0.0142064	0.130016	0.0777259
chr11	93741408	93741495	12544529	0	-	0.597701	(0.59,1]	chr11	973407	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	TAF1D	ENSG00000166012.17	ENST00000323981.6:ENST00000526015.5:ENST00000527169.5:ENST00000448108.7:ENST00000534770.1:ENST00000532235.1:ENST00000532455.1:ENST00000529508.1:ENST00000527690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	114	2	1.63662	1.75698	1.87734	0.0410169	0.00285016	0.163285	0.0245841
chr22	16614332	16614429	18285851	0	+	0.391753	(0.39,0.42]	chr22	1551656	19	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000591299.1:ENST00000588548.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	43	128	2	1.32999	1.756945	2.1839	0.0124852	9.54954e-5	0.0712168	0.0017405
chr12	71610058	71610150	13408932	0	-	0.315217	(0.29,0.33]	chr12	1055850	6	UTR3	UTR3:EXON_MRNA	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5:ENST00000550963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	26	2	1.61533	1.75691	1.89849	0.0237602	0.0197274	0.112145	0.0983378
chr9	131144279	131144362	10495803	0	+	0.590361	(0.59,1]	chr9	793240	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding	20	136	2	1.66495	1.756665	1.84838	0.00755199	0.00669215	0.0498799	0.0459821
chr7	121142056	121142141	8495279	0	+	0.494118	(0.49,0.53]	chr7	648402	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000450913.6:ENST00000423795.5	protein_coding	protein_coding	protein_coding	protein_coding	20	64	2	1.31045	1.756575	2.2027	0.0234528	0.00187632	0.10837	0.0187778
chr7	84983650	84983745	8362706	0	+	0.494737	(0.49,0.53]	chr7	637705	2	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P8	ENSG00000229251.3	ENST00000436090.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	34	2	1.49844	1.75654	2.01464	0.0290492	0.0205094	0.127648	0.0991175
chr1	40072091	40072184	151981	0	+	0.516129	(0.49,0.53]	chr1	19043	7	UTR3	UTR3:EXON_MRNA	CAP1	ENSG00000131236.18	ENST00000372797.7:ENST00000372802.5:ENST00000372792.7:ENST00000372805.8:ENST00000340450.7	protein_coding	protein_coding	protein_coding	protein_coding	24	81	2	1.53	1.756485	1.98297	0.00888631	0.00166594	0.0565003	0.0173638
chr17	81512069	81512142	16707884	0	-	0.657534	(0.59,1]	chr17	1377342	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	77	2	1.57133	1.7563550000000001	1.94138	0.0290023	0.0100942	0.129773	0.0625146
chr17	41871688	41871760	16543791	0	-	0.5	(0.49,0.53]	chr17	1356468	1	CDS	CDS:EXON_MRNA	ACLY	ENSG00000131473.17	ENST00000590151.5:ENST00000352035.7:ENST00000353196.5:ENST00000537919.5:ENST00000393896.6	protein_coding	protein_coding	protein_coding	protein_coding	8	29	2	1.7294	1.75624	1.78308	0.0425234	0.0216372	0.167547	0.103121
chr8	66114177	66114259	9375220	0	+	0.609756	(0.59,1]	chr8	716190	2	SS3_PROX	SS3_PROX:INTRON	AC084082.3	ENSG00000253190.4	ENST00000520930.1:ENST00000671118.1:ENST00000659894.1:ENST00000660814.1:ENST00000655427.1:ENST00000652875.1:ENST00000517961.3:ENST00000653437.1:ENST00000663048.1	lncRNA	lncRNA	lncRNA	lncRNA	82	587	2	1.48047	1.755475	2.03048	0.00585376	2.69223e-4	0.0423207	0.00434369
chr3	150542963	150543060	4517206	0	-	0.443299	(0.42,0.455]	chr3	374942	11	UTR3	UTR3:EXON_MRNA	SERP1	ENSG00000120742.11	ENST00000479209.1:ENST00000239944.7	protein_coding	protein_coding	protein_coding	protein_coding	22	72	2	1.74603	1.7554699999999999	1.76491	0.0122565	0.00235708	0.0705329	0.0215464
chr10	5452357	5452441	10909012	0	+	0.547619	(0.53,0.59]	chr10	830397	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	NET1	ENSG00000173848.19	ENST00000355029.9:ENST00000449083.5:ENST00000486354.1:ENST00000380359.3:ENST00000465087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	31	2	1.4703	1.75535	2.0404	0.0386603	0.0362529	0.149227	0.148525
chr4	173333499	173333549	5798085	0	-	0.48	(0.455,0.49]	chr4	456435	1	CDS	CDS:EXON_MRNA	HMGB2	ENSG00000164104.12	ENST00000296503.10:ENST00000446922.6:ENST00000438704.6:ENST00000511316.1:ENST00000506267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	92	2	1.2548	1.755295	2.25579	0.0367284	1.26777e-4	0.150429	0.00219756
chr11	9446367	9446464	11792900	0	+	0.453608	(0.42,0.455]	chr11	902941	13	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	15	48	2	1.63486	1.755285	1.87571	0.0138685	0.00949721	0.0760883	0.0597678
chr12	884743	884839	12681417	0	+	0.4375	(0.42,0.455]	chr12	984118	2	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000674810.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	48	2	1.63486	1.755285	1.87571	0.0138685	0.00949721	0.0760883	0.0597678
chr9	83969056	83969154	10712865	0	-	0.346939	(0.33,0.36]	chr9	810477	11	UTR3	UTR3:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9	protein_coding	protein_coding	protein_coding	protein_coding	50	122	2	1.11247	1.754775	2.39708	0.0286551	2.11796e-5	0.128691	5.07115e-4
chr16	88720384	88720458	16074455	0	-	0.486486	(0.455,0.49]	chr16	1291639	1	CDS	CDS:EXON_MRNA	PIEZO1	ENSG00000103335.22	ENST00000301015.14:ENST00000495568.7:ENST00000497793.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	33	2	1.70534	1.754695	1.80405	0.0239221	0.017721400000000002	0.109927	0.0918323
chr5	138574067	138574121	6862556	0	-	0.462963	(0.455,0.49]	chr5	525256	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000524109.2:ENST00000507115.6:ENST00000507097.5:ENST00000504902.6:ENST00000508003.2:ENST00000506477.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	27	2	1.68956	1.754435	1.81931	0.0381365	0.0235519	0.155455	0.108737
chr15	41285224	41285317	14885265	0	+	0.44086	(0.42,0.455]	chr15	1169251	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000558945.5:ENST00000558457.5:ENST00000500949.6:ENST00000561275.5:ENST00000668616.1:ENST00000560706.5:ENST00000559368.5:ENST00000560545.1:ENST00000649527.1:ENST00000561226.5:ENST00000557993.5:ENST00000501665.2	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:lncRNA:processed_transcript	7	24	2	1.71996	1.75442	1.78888	0.0542346	0.0259111	0.199653	0.117079
chr5	41919257	41919356	5952049	0	+	0.474747	(0.455,0.49]	chr5	466512	6	UTR3	UTR3:EXON_MRNA	C5orf51	ENSG00000205765.9	ENST00000381647.7:ENST00000612065.1	protein_coding	protein_coding	protein_coding	protein_coding	9	30	2	1.70534	1.7531400000000001	1.80094	0.0265942	0.0239221	0.120205	0.109927
chrX	154531825	154531912	19278680	0	-	0.678161	(0.59,1]	chrX	1638535	6	UTR3	UTR3:EXON_MRNA	G6PD	ENSG00000160211.19	ENST00000393562.10	protein_coding	protein_coding	protein_coding	protein_coding	8	57	2	1.72057	1.75284	1.78511	0.0314051	0.0261127	0.131369	0.118976
chr7	128954271	128954364	9060157	0	-	0.483871	(0.455,0.49]	chr7	691748	2	UTR3	UTR3:EXON_MRNA	TNPO3	ENSG00000064419.14	ENST00000627585.2:ENST00000265388.10	protein_coding	protein_coding	protein_coding	protein_coding	18	52	2	1.32859	1.7524549999999999	2.17632	0.0219321	0.00634339	0.103959	0.0446708
chr4	1693403	1693499	5279947	0	-	0.291667	(0.29,0.33]	chr4	424978	8	UTR3	UTR3:EXON_MRNA	SLBP	ENSG00000163950.13	ENST00000489418.6:ENST00000429429.6:ENST00000318386.8:ENST00000483348.5:ENST00000488267.5	protein_coding	protein_coding	protein_coding	protein_coding	12	26	2	1.50286	1.752435	2.00201	0.035536	0.0134564	0.147135	0.0744942
chr7	32868366	32868464	8759790	0	-	0.428571	(0.42,0.455]	chr7	668168	3	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.11	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	15	47	2	1.54322	1.7520449999999999	1.96087	0.0142062	0.00983972	0.0777799	0.0615953
chr11	5242056	5242151	12240512	0	-	0.452632	(0.42,0.455]	chr11	946045	11	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	HBD:HBBP1	ENSG00000223609.11:ENSG00000229988.2	ENST00000643122.1:ENST00000454892.2:ENST00000433329.1	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript:transcribed_unprocessed_pseudogene	9	27	2	1.30729	1.752015	2.19674	0.0552891	0.0254904	0.190984	0.117089
chr19	806481	806556	17189532	0	+	0.626667	(0.59,1]	chr19	1411037	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000587136.1:ENST00000585932.5:ENST00000589883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	64	2	1.63662	1.751675	1.86673	0.0410169	0.0133561	0.163285	0.0743429
chr12	112507721	112507821	13095557	0	+	0.51	(0.49,0.53]	chr12	1021682	20	UTR3	UTR3:EXON_MRNA	PTPN11	ENSG00000179295.18	ENST00000351677.7	protein_coding	protein_coding	protein_coding	protein_coding	9	31	2	1.48824	1.75144	2.01464	0.0375277	0.0205094	0.14721	0.0991175
chr9	111933787	111933886	10420386	0	+	0.484848	(0.455,0.49]	chr9	784485	9	UTR3	UTR3:EXON_MRNA	UGCG	ENSG00000148154.10	ENST00000374279.4	protein_coding	protein_coding	protein_coding	protein_coding	15	51	2	1.44449	1.750955	2.05742	0.0373875	0.00189484	0.152572	0.018224
chr17	32370054	32370152	16200651	0	+	0.377551	(0.36,0.39]	chr17	1308199	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	40	2	1.66035	1.7506249999999999	1.8409	0.026191	0.00581231	0.119224	0.0420454
chr16	177466	177522	15480754	0	+	0.589286	(0.53,0.59]	chr16	1224211	2	UTR3	UTR3:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	68	311	2	1.02104	1.75042	2.4798	0.0369847	2.69168e-6	0.151434	9.23834e-5
chr7	148983754	148983805	8611133	0	+	0.470588	(0.455,0.49]	chr7	656762	1	EXON_SMALL	EXON_SMALL	RNY3	ENSG00000202354.1	ENST00000365484.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	448	1405	2	1.37725	1.7499500000000001	2.12265	0.00208343	5.23074e-6	0.0195774	1.76248e-4
chr2	231713313	231713398	2426306	0	+	0.317647	(0.29,0.33]	chr2	218684	1	EXON_SMALL	EXON_SMALL:UTR3:EXON_MRNA:PRIMIRNA	PTMA:MIR1244-1	ENSG00000187514.17:ENSG00000284378.1	ENST00000448874.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000612829.5	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	36	86	2	1.43427	1.7498900000000002	2.06551	0.0144179	2.55166e-4	0.0787202	0.00383691
chr7	12340321	12340417	8683051	0	-	0.46875	(0.455,0.49]	chr7	663927	1	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	33	2	1.71363	1.749585	1.78554	0.0246293	0.0178667	0.114941	0.0936098
chr6	67882679	67882779	7784087	0	-	0.42	(0.39,0.42]	chr6	596223	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	59	168	2	1.73049	1.7492800000000002	1.76807	8.93361e-4	7.6346e-4	0.0102455	0.00953175
chr11	118583178	118583268	12159546	0	+	0.366667	(0.36,0.39]	chr11	937234	1	CDS	CDS:EXON_MRNA:INTRON	ARCN1	ENSG00000095139.14	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	12	33	2	1.55109	1.749005	1.94692	0.0202967	0.0192083	0.0985067	0.0943643
chr6	166365088	166365173	8077786	0	-	0.270588	[0,0.29]	chr6	616694	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MPC1	ENSG00000060762.19	ENST00000341756.10:ENST00000621630.1:ENST00000621685.4:ENST00000360961.11:ENST00000487218.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	21	2	1.33617	1.748455	2.16074	0.0560355	0.0222978	0.192804	0.105845
chr1	96448020	96448119	366407	0	+	0.454545	(0.42,0.455]	chr1	35865	12	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P11	ENSG00000228502.1	ENST00000415278.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	53	157	2	1.46958	1.7483300000000002	2.02708	0.00342501	4.36178e-4	0.0283456	0.00623927
chr2	68178856	68178951	2716486	0	-	0.273684	[0,0.29]	chr2	241809	1	UTR3	UTR3:EXON_MRNA:INTRON	RP11-474G23.1:PPP3R1	ENSG00000273398.6:ENSG00000221823.11	ENST00000406334.3:ENST00000234310.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	33	2	1.69721	1.748215	1.79922	0.0223458	0.00983711	0.106042	0.0614205
chr7	92612460	92612559	8924964	0	-	0.363636	(0.36,0.39]	chr7	681136	77	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	16	43	2	1.26925	1.7479	2.22655	0.0493991	0.00169792	0.18557	0.0166327
chr8	61203220	61203319	9357856	0	+	0.272727	[0,0.29]	chr8	715607	1	INTRON	INTRON	CLVS1	ENSG00000177182.11	ENST00000522621.1	protein_coding	protein_coding	protein_coding	protein_coding	69	136	2	1.55413	1.7472050000000001	1.94028	0.00240772	2.57732e-4	0.021767	0.00419998
chr1	27851108	27851202	114792	0	+	0.382979	(0.36,0.39]	chr1	13956	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	PPP1R8	ENSG00000117751.18	ENST00000311772.10:ENST00000236412.11:ENST00000373931.8:ENST00000486634.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	25	2	1.66365	1.746745	1.82984	0.0345996	0.0234753	0.143631	0.108434
chr11	65426112	65426211	11984604	0	+	0.262626	[0,0.29]	chr11	920390	21	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	41	81	2	1.32001	1.74667	2.17333	0.0134749	2.38796e-4	0.0745351	0.00393328
chr9	128695821	128695917	10480938	0	+	0.416667	(0.39,0.42]	chr9	790686	13	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	24	72	2	1.61043	1.746635	1.88284	0.0104687	0.00162144	0.063428	0.0161212
chr11	764928	765012	11758811	0	+	0.309524	(0.29,0.33]	chr11	898445	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TALDO1	ENSG00000177156.11	ENST00000528097.5:ENST00000319006.8:ENST00000530666.1:ENST00000532202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	42	2	1.42007	1.745515	2.07096	0.0347791	0.00195265	0.144346	0.0186112
chrM	7685	7781	19377214	0	+	0.40625	(0.39,0.42]	chrM	1649808	1	CDS	CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	393	1080	2	1.60631	1.744965	1.88362	3.60976e-4	5.65902e-5	0.00544764	0.00114149
chrX	153692054	153692134	18915600	0	+	0.5875	(0.53,0.59]	chrX	1611179	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SLC6A8	ENSG00000130821.17	ENST00000253122.10:ENST00000430077.6:ENST00000675713.1:ENST00000466243.1:ENST00000467402.1:ENST00000429147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	24	97	2	1.40618	1.744575	2.08297	0.0189815	6.05962e-4	0.0936999	0.00757169
chr19	1440219	1440319	17193292	0	+	0.66	(0.59,1]	chr19	1412199	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS15	ENSG00000115268.10	ENST00000233609.8:ENST00000586686.6:ENST00000592588.7:ENST00000591032.1:ENST00000592623.5:ENST00000589656.6:ENST00000586656.5:ENST00000591804.6:ENST00000593052.5:ENST00000592700.2:ENST00000586096.3:ENST00000585665.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	129	2	1.60101	1.74418	1.88735	0.0116627	0.00538181	0.0686664	0.0395213
chr17	53106000	53106090	16270801	0	+	0.433333	(0.42,0.455]	chr17	1319815	4	EXON_PSEUDO	EXON_PSEUDO	MTCO1P40	ENSG00000262902.1	ENST00000574371.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	14	44	2	1.56666	1.7428249999999998	1.91899	0.0200852	0.00718351	0.0975506	0.0482184
chr4	77047831	77047927	5479168	0	-	0.416667	(0.39,0.42]	chr4	439254	8	UTR3	UTR3:EXON_MRNA	CCNI	ENSG00000118816.11	ENST00000237654.9	protein_coding	protein_coding	protein_coding	protein_coding	52	159	2	1.39686	1.7425700000000002	2.08828	0.0085054	8.88372e-5	0.0550339	0.00165071
chr1	150622573	150622663	1289202	0	-	0.411111	(0.39,0.42]	chr1	128268	6	UTR3	UTR3:EXON_MRNA:INTRON	ENSA	ENSG00000143420.19	ENST00000369016.8:ENST00000369014.10:ENST00000361532.9:ENST00000361631.9	protein_coding	protein_coding	protein_coding	protein_coding	13	30	2	1.22198	1.7423450000000003	2.2627100000000002	0.0489386	0.0192666	0.183874	0.0966228
chr11	10801537	10801608	12272586	0	-	0.380282	(0.36,0.39]	chr11	948991	2	EXON_SMALL	EXON_SMALL:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2:SNORD97	ENSG00000110321.19:ENSG00000238622.1	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000530564.1:ENST00000531416.6:ENST00000459187.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:processed_transcript	12	31	2	1.38287	1.74223	2.10159	0.0446017	0.00841765	0.172386	0.0543584
chr5	95796166	95796263	6108518	0	+	0.257732	[0,0.29]	chr5	478272	23	UTR3	UTR3:EXON_MRNA:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8:ENST00000513091.1	protein_coding	protein_coding	protein_coding	protein_coding	20	44	2	1.36289	1.7419449999999999	2.121	0.0417087	0.0011198	0.165482	0.0121961
chr8	123209328	123209425	9588622	0	+	0.340206	(0.33,0.36]	chr8	727199	18	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FAM83A	ENSG00000147689.16	ENST00000536633.2:ENST00000518448.5:ENST00000522648.5:ENST00000276699.10	protein_coding	protein_coding	protein_coding	protein_coding	29	82	2	1.20971	1.741775	2.27384	0.0442815	9.18606e-5	0.172163	0.0016906
chr6	2889363	2889463	7570635	0	-	0.46	(0.455,0.49]	chr6	577661	22	UTR3	UTR3:EXON_MRNA	SERPINB9	ENSG00000170542.6	ENST00000380698.5	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	1.30626	1.74129	2.17632	0.0476147	0.00634339	0.174033	0.0446708
chr22	21451168	21451266	18302376	0	+	0.561224	(0.53,0.59]	chr22	1554129	46	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	36	139	2	1.54681	1.741015	1.93522	0.00488105	7.86234e-4	0.0366648	0.00979968
chr6	57184487	57184586	7191743	0	+	0.434343	(0.42,0.455]	chr6	556128	4	UTR3	UTR3:EXON_MRNA	BAG2	ENSG00000112208.11	ENST00000370693.5	protein_coding	protein_coding	protein_coding	protein_coding	15	43	2	1.15367	1.740685	2.3277	0.0551	0.00333145	0.190367	0.0286606
chrX	73827189	73827288	19113540	0	-	0.575758	(0.53,0.59]	chrX	1626115	56	EXON_LNCRNA	EXON_LNCRNA	XIST	ENSG00000229807.13	ENST00000669898.1:ENST00000650627.1:ENST00000434839.3:ENST00000421322.3:ENST00000429829.6:ENST00000648829.1:ENST00000647913.2:ENST00000647696.1:ENST00000650366.1:ENST00000648607.1:ENST00000650548.1:ENST00000650186.1:ENST00000635841.2:ENST00000650637.1:ENST00000648970.1:ENST00000649757.1:ENST00000648991.1:ENST00000648091.1:ENST00000648927.2:ENST00000649353.1	lncRNA	lncRNA	lncRNA	lncRNA	14	56	2	1.64521	1.7402250000000001	1.83524	0.0162808	0.00732584	0.0866972	0.0491463
chr1	151051362	151051461	1291618	0	-	0.272727	[0,0.29]	chr1	128778	5	UTR3	UTR3:EXON_MRNA	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6	protein_coding	protein_coding	protein_coding	protein_coding	37	73	2	1.30712	1.740135	2.17315	0.0168874	2.80081e-4	0.089274	0.00448836
chr6	24719359	24719459	7638924	0	-	0.53	(0.49,0.53]	chr6	581828	1	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	23	69	2	1.09262	1.7398949999999997	2.38717	0.0452465	6.74369e-4	0.174743	0.00826103
chr10	70209204	70209290	11560674	0	-	0.348837	(0.33,0.36]	chr10	879638	1	CDS	CDS:EXON_MRNA	PPA1	ENSG00000180817.12	ENST00000373232.8:ENST00000610026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	39	2	1.65713	1.7393	1.82147	0.0528205	0.00412466	0.195536	0.0324998
chr6	159779708	159779790	8049062	0	-	0.47561	(0.455,0.49]	chr6	615253	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCP1	ENSG00000120438.12	ENST00000321394.12:ENST00000544255.5:ENST00000420894.6:ENST00000392168.6:ENST00000546204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	57	2	1.56984	1.7388949999999999	1.90795	0.0151327	0.00332113	0.0821639	0.0285847
chr20	44499605	44499704	17981990	0	-	0.353535	(0.33,0.36]	chr20	1523364	23	UTR3	UTR3:EXON_MRNA:INTRON	SERINC3	ENSG00000132824.14	ENST00000411544.5:ENST00000255175.5:ENST00000342374.5	protein_coding	protein_coding	protein_coding	protein_coding	17	40	2	1.32113	1.73834	2.15555	0.0286448	0.00575018	0.126101	0.0426551
chr9	137241720	137241774	10515389	0	+	0.611111	(0.59,1]	chr9	797245	1	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	83	2	1.7297	1.73822	1.74674	0.016326	0.0158071	0.0867237	0.085143
chr3	185923795	185923889	4628325	0	-	0.393617	(0.39,0.42]	chr3	382268	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	TRA2B	ENSG00000136527.18	ENST00000453386.7:ENST00000492417.5:ENST00000463328.5:ENST00000259043.11:ENST00000487615.5:ENST00000466832.5:ENST00000456380.5:ENST00000382191.4:ENST00000465245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	38	2	1.53387	1.7380650000000002	1.94226	0.0212386	0.01151	0.102705	0.0679423
chr3	113721268	113721366	4360316	0	-	0.377551	(0.36,0.39]	chr3	363906	50	UTR3	UTR3:EXON_MRNA	NAA50	ENSG00000121579.13	ENST00000240922.8:ENST00000616174.1:ENST00000477813.5:ENST00000497525.5	protein_coding	protein_coding	protein_coding	protein_coding	11	29	2	1.72655	1.737645	1.74874	0.033108	0.0142811	0.13754	0.0780385
chr9	128695146	128695242	10480931	0	+	0.375	(0.36,0.39]	chr9	790686	6	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	60	152	2	1.2012100000000001	1.7376150000000001	2.27402	0.0150015	2.56363e-5	0.0815224	6.59856e-4
chr1	235109534	235109631	1560067	0	-	0.381443	(0.36,0.39]	chr1	156012	3	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	25	67	2	1.61313	1.737615	1.8621	0.00517191	0.00485959	0.0395545	0.0366328
chr17	82087324	82087414	16710775	0	-	0.633333	(0.59,1]	chr17	1378201	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	8	55	2	1.48516	1.7376	1.99004	0.047789	0.0214639	0.18008	0.102904
chr1	180758721	180758817	585338	0	+	0.427083	(0.42,0.455]	chr1	60665	1	EXON_SMALL	EXON_SMALL:INTRON	XPR1:U6	ENSG00000143324.14:ENSG00000283575.1	ENST00000367590.9:ENST00000367589.3:ENST00000636407.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding	21	70	2	1.56666	1.737415	1.90817	0.0200852	0.00139442	0.0975506	0.0144113
chr9	109083222	109083321	10788416	0	-	0.424242	(0.42,0.455]	chr9	816868	19	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	27	2	1.71996	1.737325	1.75469	0.0542346	0.0198622	0.199653	0.0984041
chr7	116898771	116898835	8477963	0	+	0.359375	(0.33,0.36]	chr7	647498	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	CAPZA2	ENSG00000198898.14	ENST00000464223.5:ENST00000484325.1:ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1:ENST00000628758.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	30	2	1.5354	1.7373150000000002	1.93923	0.0272526	0.0142064	0.120857	0.0777259
chr10	123164114	123164207	11299064	0	+	0.290323	(0.29,0.33]	chr10	861589	4	UTR3	UTR3:EXON_MRNA:INTRON	BUB3	ENSG00000154473.18	ENST00000368865.9:ENST00000368859.6:ENST00000368858.9	protein_coding	protein_coding	protein_coding	protein_coding	15	35	2	1.50286	1.737075	1.97129	0.035536	0.004502	0.147135	0.0344286
chr1	12617348	12617443	862590	0	-	0.568421	(0.53,0.59]	chr1	87540	1	UTR5	UTR5:EXON_MRNA	DHRS3	ENSG00000162496.9	ENST00000616661.5	protein_coding	protein_coding	protein_coding	protein_coding	18	71	2	1.68308	1.73684	1.7906	0.00899393	0.00547839	0.0571035	0.0402071
chr6	73517612	73517710	7796064	0	-	0.377551	(0.36,0.39]	chr6	597132	20	UTR3	UTR3:EXON_MRNA:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678508.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000679031.1:ENST00000495333.6:ENST00000678703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	205	525	2	1.70139	1.736415	1.77144	2.63736e-4	1.78028e-4	0.00427022	0.00288391
chr17	35624396	35624491	16206483	0	+	0.442105	(0.42,0.455]	chr17	1309045	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	AP2B1	ENSG00000006125.18	ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000614600.4:ENST00000612116.5:ENST00000618940.4:ENST00000591561.5:ENST00000619183.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	29	2	1.27484	1.7357900000000002	2.19674	0.0524066	0.0254904	0.18423900000000001	0.117089
chr5	134157432	134157532	6843694	0	-	0.37	(0.36,0.39]	chr5	523620	86	UTR3	UTR3:EXON_MRNA	SKP1	ENSG00000113558.19	ENST00000353411.11:ENST00000522552.5:ENST00000521216.5:ENST00000517691.1:ENST00000517625.5:ENST00000523966.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	29	2	1.66836	1.735315	1.80227	0.0474647	0.0123074	0.17993	0.070688
chr7	139340619	139340719	8565466	0	+	0.46	(0.455,0.49]	chr7	653588	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FMC1:LUC7L2	ENSG00000164898.13:ENSG00000146963.18	ENST00000468383.5:ENST00000541170.7:ENST00000481123.1:ENST00000482181.1:ENST00000488886.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	220	682	2	1.52128	1.7352699999999999	1.94926	0.00119155	3.27589e-5	0.0128183	8.02446e-4
chr19	811670	811764	17189591	0	+	0.723404	(0.59,1]	chr19	1411055	10	UTR3	UTR3:EXON_MRNA	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000356948.11:ENST00000394601.8:ENST00000679114.1:ENST00000350092.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	104	2	1.53505	1.734985	1.93492	0.0267547	0.00436548	0.120926	0.0335552
chr1	20744599	20744697	883115	0	-	0.438776	(0.42,0.455]	chr1	91337	45	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000488722.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	50	2	1.53201	1.7349450000000002	1.93788	0.0210878	0.00384673	0.102003	0.032089
chr10	70422145	70422244	11100452	0	+	0.494949	(0.49,0.53]	chr10	844350	5	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	7	25	2	1.65324	1.734915	1.81659	0.0407792	0.0376859	0.163285	0.147713
chr12	104348718	104348818	13059141	0	+	0.32	(0.29,0.33]	chr12	1017716	4	UTR3	UTR3:EXON_MRNA	TXNRD1	ENSG00000198431.16	ENST00000525566.6:ENST00000429002.6:ENST00000354940.10:ENST00000388854.7:ENST00000397736.6:ENST00000503506.6:ENST00000526691.5:ENST00000526390.5:ENST00000529546.5:ENST00000527688.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	53	2	1.51736	1.7348750000000002	1.95239	0.02428	0.00139445	0.114157	0.0144113
chr20	4024092	4024180	17659666	0	+	0.602273	(0.59,1]	chr20	1493147	3	EXON_PSEUDO	EXON_PSEUDO	FTLP3	ENSG00000226608.3	ENST00000427242.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	12	83	2	1.66201	1.73446	1.80691	0.0277662	0.00946423	0.125327	0.0595634
chr5	179836941	179837035	6415306	0	+	0.414894	(0.39,0.42]	chr5	499339	4	UTR3	UTR3:EXON_MRNA	SQSTM1	ENSG00000161011.20	ENST00000389805.9:ENST00000510187.5:ENST00000360718.5	protein_coding	protein_coding	protein_coding	protein_coding	19	57	2	1.22198	1.734165	2.24635	0.0489386	6.59236e-4	0.183874	0.00813482
chr22	20537126	20537204	18298673	0	+	0.512821	(0.49,0.53]	chr22	1553433	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1:ENST00000445189.5:ENST00000451058.5:ENST00000473028.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	25	2	1.56467	1.7340849999999999	1.9035	0.051923	0.0295204	0.18423900000000001	0.129773
chr4	108625127	108625212	5038337	0	+	0.423529	(0.42,0.455]	chr4	409835	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPL34	ENSG00000109475.17	ENST00000502534.5:ENST00000394667.8:ENST00000394665.5:ENST00000506397.5:ENST00000394668.2:ENST00000504231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	32	104	2	1.56878	1.7340849999999999	1.89939	0.00893792	6.70202e-4	0.0567771	0.00821233
chr8	47837280	47837349	9816139	0	-	0.304348	(0.29,0.33]	chr8	742621	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	17	37	2	1.69422	1.733975	1.77373	0.0117607	0.0110365	0.0686664	0.0665375
chr8	47927193	47927273	9817083	0	-	0.4625	(0.455,0.49]	chr8	742827	1	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7:ENST00000541488.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	43	2	1.28026	1.7334999999999998	2.18674	0.045129	0.0034804	0.167515	0.0295021
chr8	23567487	23567583	9230669	0	+	0.447917	(0.42,0.455]	chr8	706549	8	EXON_MRNA	EXON_MRNA:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	60	196	2	1.39137	1.7333349999999998	2.0753	0.00728758	7.32656e-5	0.0490627	0.00140507
chr20	36050036	36050134	17956042	0	-	0.326531	(0.29,0.33]	chr20	1521358	46	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	27	60	2	1.70116	1.73331	1.76546	0.00507377	0.00407525	0.0389108	0.032143
chr17	75778001	75778099	16684885	0	-	0.265306	[0,0.29]	chr17	1373459	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8:ENST00000593254.1:ENST00000586518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	38	2	1.49186	1.73324	1.97462	0.0300978	0.00334737	0.129773	0.0279427
chr18	1358725	1358824	16976274	0	-	0.474747	(0.455,0.49]	chr18	1396235	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LINC00470	ENSG00000132204.14	ENST00000657423.1:ENST00000657618.1:ENST00000584090.5:ENST00000660947.1:ENST00000669242.1:ENST00000660475.1:ENST00000653775.1:ENST00000661931.1:ENST00000412816.7:ENST00000577867.5:ENST00000584492.5:ENST00000667416.1:ENST00000661852.1:ENST00000657919.1:ENST00000661646.1:ENST00000667776.1:ENST00000654559.1:ENST00000661233.1:ENST00000653213.1:ENST00000659094.1:ENST00000660964.1:ENST00000577403.6:ENST00000660358.1:ENST00000669153.1:ENST00000657121.1:ENST00000655957.1:ENST00000659289.1:ENST00000665133.1:ENST00000671558.1:ENST00000666542.1:ENST00000663512.1:ENST00000582862.6:ENST00000578835.5:ENST00000669312.1:ENST00000581430.5:ENST00000581212.1:ENST00000658090.1:ENST00000667225.1	lncRNA	lncRNA	lncRNA	lncRNA	12	37	2	1.375	1.733115	2.09123	0.0377607	0.00905243	0.147993	0.0574173
chr8	100924973	100925039	9976268	0	-	0.378788	(0.36,0.39]	chr8	752741	1	CDS	CDS:UTR5:EXON_MRNA	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5:ENST00000522819.5:ENST00000395953.6:ENST00000395948.6:ENST00000395951.7:ENST00000419477.6:ENST00000521607.5:ENST00000480304.5:ENST00000518736.5:ENST00000517727.5:ENST00000521328.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	31	2	1.66365	1.73296	1.80227	0.0345996	0.0123074	0.143631	0.070688
chr1	162522649	162522749	507489	0	+	0.41	(0.39,0.42]	chr1	54762	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	33	2	1.59402	1.732605	1.87119	0.0373134	0.0167404	0.152293	0.088513
chr6	67883776	67883876	7784098	0	-	0.46	(0.455,0.49]	chr6	596223	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	84	258	2	1.68891	1.731805	1.7747	6.33587e-4	5.20905e-4	0.00787177	0.00727001
chr13	27254219	27254281	13657848	0	+	0.370968	(0.36,0.39]	chr13	1076395	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RPL21	ENSG00000122026.11	ENST00000473558.5:ENST00000311549.11:ENST00000461690.5:ENST00000272274.8:ENST00000319826.8:ENST00000326092.8:ENST00000493317.1:ENST00000483765.5:ENST00000466550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	127	2	1.36748	1.731785	2.09609	0.0123616	1.14797e-4	0.0705839	0.00203634
chr1	91387328	91387427	1163773	0	-	0.525253	(0.49,0.53]	chr1	114858	11	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3492	11356	2	1.71629	1.731645	1.747	1.3507e-4	1.1786e-4	0.0025017	0.00206608
chr4	44700341	44700439	4816765	0	+	0.346939	(0.33,0.36]	chr4	397340	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GUF1	ENSG00000151806.14	ENST00000281543.6:ENST00000506793.5:ENST00000511493.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	18	2	1.65713	1.731605	1.80608	0.0528205	0.0416784	0.195536	0.157445
chr3	152300193	152300293	3816860	0	+	0.5	(0.49,0.53]	chr3	325628	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000466565.1:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	47	2	1.41373	1.7315550000000002	2.04938	0.0487081	0.00271214	0.183028	0.023726
chr16	2519839	2519934	15493412	0	+	0.652632	(0.59,1]	chr16	1227537	2	UTR3	UTR3:EXON_MRNA:INTRON	RP11-20I23.1:ATP6V0C:RP11-20I23.3	ENSG00000260272.1:ENSG00000185883.12:ENSG00000259784.1	ENST00000564543.1:ENST00000330398.9:ENST00000569317.1:ENST00000565223.1:ENST00000564973.1	protein_coding	protein_coding	protein_coding	protein_coding	16	109	2	1.34324	1.731205	2.11917	0.0379847	0.00244784	0.154937	0.0221222
chr5	14653229	14653329	6462543	0	-	0.42	(0.39,0.42]	chr5	502940	14	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	152	432	2	1.66418	1.731085	1.79799	4.1407e-4	2.3389e-4	0.00562655	0.00385521
chr3	47852217	47852313	4163758	0	-	0.354167	(0.33,0.36]	chr3	348488	17	UTR3	UTR3:EXON_MRNA	MAP4	ENSG00000047849.22	ENST00000429422.5:ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000420772.6	protein_coding	protein_coding	protein_coding	protein_coding	19	47	2	1.38335	1.730855	2.07836	0.031567	0.00180005	0.133342	0.0174508
chrM	3784	3879	19377177	0	+	0.431579	(0.42,0.455]	chrM	1649799	6	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	132	395	2	1.56112	1.7306050000000002	1.90009	0.00112628	8.94742e-5	0.0122637	0.00180777
chr12	12111951	12112036	12736775	0	+	0.317647	(0.29,0.33]	chr12	990194	1	EXON_SMALL	EXON_SMALL:PRIMIRNA:INTRON	BCL2L14:MIR1244-4	ENSG00000121380.12:ENSG00000283475.1	ENST00000298566.2:ENST00000636813.1	miRNA	miRNA	miRNA:protein_coding	miRNA:nonsense_mediated_decay:primary_miRNA	23	51	2	1.31567	1.7304249999999999	2.14518	0.0329205	9.40085e-4	0.138402	0.0106307
chr9	35707162	35707253	10639559	0	-	0.626374	(0.59,1]	chr9	805031	2	CDS	CDS:EXON_MRNA:INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000464379.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	46	2	1.42148	1.7303450000000002	2.03921	0.0566164	0.0371471	0.194397	0.151849
chrM	2232	2329	19377161	0	+	0.360825	(0.36,0.39]	chrM	1649798	18	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	11120	27953	2	1.56886	1.730235	1.89161	3.8387e-4	2.16256e-5	0.00531017	5.71845e-4
chr10	100364426	100364526	11219504	0	+	0.38	(0.36,0.39]	chr10	853930	36	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	19	51	2	1.72711	1.7300550000000001	1.733	0.0097389	0.00620836	0.0610191	0.0441767
chr6	24719459	24719559	7638925	0	-	0.53	(0.49,0.53]	chr6	581828	2	SS5_PROX	SS5_PROX:INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	9	32	2	1.56467	1.73004	1.89541	0.051923	0.0117923	0.18423900000000001	0.0686664
chr12	8941725	8941817	13197232	0	-	0.478261	(0.455,0.49]	chr12	1033916	10	UTR3	UTR3:EXON_MRNA:INTRON	M6PR	ENSG00000003056.8	ENST00000000412.8:ENST00000541507.5:ENST00000539143.5:ENST00000536844.5:ENST00000544193.1:ENST00000543704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	35	2	1.55542	1.729875	1.90433	0.0239018	0.0185466	0.109882	0.0932453
chr1	24669308	24669401	102141	0	+	0.537634	(0.53,0.59]	chr1	12019	3	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	78	2	1.3927	1.729645	2.06659	0.0164154	0.00244421	0.0871004	0.0229472
chrX	154353978	154354043	19278017	0	-	0.553846	(0.53,0.59]	chrX	1638273	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5:ENST00000438732.2:ENST00000474072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	69	2	1.47511	1.72906	1.98301	0.0160526	0.00369537	0.0864828	0.0309587
chr16	23690063	23690139	15595347	0	+	0.684211	(0.59,1]	chr16	1236752	1	UTR3	UTR3:EXON_MRNA	PLK1	ENSG00000166851.15	ENST00000562272.5:ENST00000300093.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	49	2	1.66744	1.7289750000000002	1.79051	0.0396851	0.0369183	0.161349	0.145208
chr9	107329943	107330039	10410545	0	+	0.333333	(0.33,0.36]	chr9	784033	4	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	39	94	2	1.60491	1.72868	1.85245	0.00288816	0.00173854	0.0247812	0.0179299
chr12	49040485	49040581	13323397	0	-	0.677083	(0.59,1]	chr12	1045492	9	CDS	CDS:EXON_MRNA	KMT2D	ENSG00000167548.17	ENST00000301067.12:ENST00000683543.1	protein_coding	protein_coding	protein_coding	protein_coding	7	49	2	1.58352	1.728245	1.87297	0.0477456	0.0308113	0.179958	0.130016
chr1	237603207	237603306	777831	0	+	0.565657	(0.53,0.59]	chr1	78185	7	INTRON	INTRON	RYR2	ENSG00000198626.17	ENST00000366574.7:ENST00000360064.7	protein_coding	protein_coding	protein_coding	protein_coding	53	201	2	1.08309	1.7281849999999999	2.37328	0.0273024	2.39616e-5	0.123382	5.65576e-4
chr3	22382633	22382732	3353713	0	+	0.444444	(0.42,0.455]	chr3	294010	8	EXON_LNCRNA	EXON_LNCRNA	HMGB1P5	ENSG00000132967.9	ENST00000451497.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	13	41	2	1.30729	1.72786	2.14843	0.0552891	0.00271028	0.190984	0.0244369
chr4	56461020	56461119	4848740	0	+	0.393939	(0.39,0.42]	chr4	399473	16	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	43	120	2	1.60796	1.7278250000000002	1.84769	0.00320535	7.49666e-4	0.0268626	0.00936849
chr5	10307809	10307902	6447182	0	-	0.645161	(0.59,1]	chr5	502204	3	UTR5	UTR5:EXON_MRNA	CMBL	ENSG00000164237.9	ENST00000296658.4:ENST00000506821.1:ENST00000514202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	86	2	1.62387	1.72763	1.83139	0.0225	0.0133442	0.106723	0.0743309
chr22	20426102	20426192	18437067	0	-	0.766667	(0.59,1]	chr22	1571503	8	CDS	CDS:EXON_MRNA	SCARF2	ENSG00000244486.9	ENST00000622235.5:ENST00000623402.1:ENST00000494535.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	189	2	1.66118	1.72753	1.79388	0.0119918	0.00223107	0.0691408	0.0206429
chr1	112913792	112913890	1232314	0	-	0.428571	(0.42,0.455]	chr1	120455	21	UTR3	UTR3:EXON_MRNA	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	1.58956	1.7273450000000001	1.86513	0.0485703	0.0357107	0.175495	0.147298
chr8	102828074	102828173	9984416	0	-	0.272727	[0,0.29]	chr8	753432	21	UTR3	UTR3:EXON_MRNA	AZIN1	ENSG00000155096.15	ENST00000681985.1:ENST00000684566.1:ENST00000682725.1:ENST00000337198.10:ENST00000684459.1:ENST00000683787.1:ENST00000682014.1:ENST00000682969.1:ENST00000684721.1:ENST00000683965.1:ENST00000347770.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	30	2	1.56849	1.72696	1.88543	0.0226603	0.0170856	0.10742	0.0903026
chr14	102050573	102050672	14495930	0	+	0.333333	(0.33,0.36]	chr14	1133289	1	UTR3	UTR3:EXON_MRNA	DYNC1H1	ENSG00000197102.14	ENST00000360184.10:ENST00000684561.1:ENST00000680313.1:ENST00000679720.1:ENST00000680715.1:ENST00000681283.1:ENST00000681822.1:ENST00000679910.1:ENST00000681574.1:ENST00000645039.2:ENST00000645149.2:ENST00000680200.1:ENST00000680120.1:ENST00000644881.2:ENST00000681066.1:ENST00000680423.1:ENST00000681536.1:ENST00000643437.1:ENST00000643829.1:ENST00000647204.2:ENST00000645085.1:ENST00000644239.2:ENST00000643591.1:ENST00000556229.2:ENST00000647143.1:ENST00000643729.1:ENST00000555062.2:ENST00000680178.1:ENST00000645978.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	37	2	1.68466	1.726855	1.76905	0.0351252	0.00661691	0.145575	0.0461216
chrX	78104247	78104340	18746920	0	+	0.602151	(0.59,1]	chrX	1599801	1	UTR5	UTR5:EXON_MRNA:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000477335.5:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	122	2	1.6996	1.726445	1.75329	0.00983879	0.00826063	0.0614298	0.0541632
chr19	58550553	58550637	17413366	0	+	0.690476	(0.59,1]	chr19	1451224	1	UTR3	UTR3:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	33	221	2	1.56813	1.726375	1.88462	0.00801634	0.00177231	0.0528968	0.0172713
chr2	101019333	101019432	1957165	0	+	0.242424	[0,0.29]	chr2	185919	4	UTR3	UTR3:EXON_MRNA:INTRON	RPL31	ENSG00000071082.11	ENST00000409028.8:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding	10	22	2	1.63724	1.726145	1.81505	0.0409713	0.0255145	0.163285	0.115596
chr7	26197358	26197458	8734109	0	-	0.44	(0.42,0.455]	chr7	666676	1	CDS_START	CDS_START:CDS:EXON_MRNA	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	72	245	2	0.907609	1.7257945	2.54398	0.0545884	7.87328e-7	0.188917	3.61909e-5
chr7	150328929	150329027	8614677	0	+	0.479592	(0.455,0.49]	chr7	657691	4	UTR5	UTR5:EXON_MRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding	10	33	2	1.68956	1.72562	1.76168	0.0381365	0.0140234	0.155455	0.076809
chr18	8919316	8919414	16750752	0	+	0.377551	(0.36,0.39]	chr18	1381318	27	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	15	39	2	1.25663	1.72556	2.19449	0.0500294	0.00263771	0.179864	0.0239302
chr3	196831463	196831561	3990210	0	+	0.438776	(0.42,0.455]	chr3	336202	32	UTR3	UTR3:EXON_MRNA	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	9	30	2	1.71996	1.72525	1.73054	0.0542346	0.0157335	0.199653	0.0850622
chr12	6770782	6770867	12713986	0	+	0.670588	(0.59,1]	chr12	986785	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000538057.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	143	2	1.6208	1.725055	1.82931	0.0164916	0.00317111	0.0873033	0.0267094
chr11	68614441	68614536	12001076	0	+	0.284211	[0,0.29]	chr11	923850	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000526307.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	21	2	1.56356	1.7244950000000001	1.88543	0.0431251	0.0226603	0.161433	0.10742
chr4	56461119	56461218	4848741	0	+	0.363636	(0.36,0.39]	chr4	399473	17	UTR3	UTR3:EXON_MRNA	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000399688.7:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding	30	82	2	1.54851	1.724205	1.8999	0.0100787	9.50518e-4	0.062514	0.0107235
chr11	58618888	58618987	11955362	0	+	0.323232	(0.29,0.33]	chr11	914993	13	UTR3	UTR3:EXON_MRNA:INTRON	ZFP91:ZFP91-CNTF	ENSG00000186660.15:ENSG00000255073.8	ENST00000316059.7:ENST00000389919.8:ENST00000422974.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	41	2	1.29561	1.72348	2.15135	0.0361139	0.00209207	0.145024	0.0204266
chr19	58549948	58550035	17413357	0	+	0.597701	(0.59,1]	chr19	1451216	1	CDS	CDS:EXON_MRNA:PRIMIRNA	TRIM28:MIR6807	ENSG00000130726.12:ENSG00000275924.1	ENST00000253024.10:ENST00000341753.10:ENST00000597136.1:ENST00000595974.5:ENST00000600840.1:ENST00000598355.1:ENST00000621968.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	31	200	2	1.51839	1.7233649999999998	1.92834	0.00792227	0.0027746	0.0517717	0.024808
chr3	152464181	152464281	3818520	0	+	0.21	[0,0.29]	chr3	325707	19	UTR3	UTR3:EXON_MRNA	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000324210.10:ENST00000493459.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000497971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	30	2	1.63351	1.72329	1.81307	0.0208248	0.0130205	0.100465	0.0731489
chr16	29664931	29665030	15626159	0	+	0.626263	(0.59,1]	chr16	1239197	1	UTR3	UTR3:EXON_MRNA:INTRON	SPN:QPRT	ENSG00000197471.12:ENSG00000103485.19	ENST00000395389.2:ENST00000360121.4:ENST00000652691.1:ENST00000563039.2:ENST00000449759.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	62	2	1.57004	1.72314	1.87624	0.0364827	0.0194045	0.145024	0.0944333
chr1	44776033	44776086	174091	0	+	0.603774	(0.59,1]	chr1	22416	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS8	ENSG00000142937.12	ENST00000497035.5:ENST00000396651.8:ENST00000372209.3:ENST00000470475.1:ENST00000485390.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	286	2	1.08638	1.722655	2.35893	0.051883	7.72192e-5	0.193787	0.00146894
chr6	31730754	31730841	7662108	0	-	0.574713	(0.53,0.59]	chr6	585118	3	UTR3	UTR3:EXON_MRNA	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000375784.7:ENST00000616760.1	protein_coding	protein_coding	protein_coding	protein_coding	15	58	2	1.53931	1.722645	1.90598	0.0165923	0.00735883	0.0878626	0.0490627
chr19	9561017	9561115	17454563	0	-	0.418367	(0.39,0.42]	chr19	1459747	8	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.65092	1.722345	1.79377	0.0299302	0.0216584	0.129773	0.103121
chr7	5528719	5528818	8659488	0	-	0.565657	(0.53,0.59]	chr7	662119	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	54	2	1.59701	1.721895	1.84678	0.0134899	0.0130723	0.0745701	0.0729985
chr1	32013867	32013931	125558	0	+	0.734375	(0.59,1]	chr1	15416	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	69	2	1.57629	1.7215099999999999	1.86673	0.0363893	0.0133561	0.14906	0.0743429
chr13	46374495	46374590	14010928	0	-	0.357895	(0.33,0.36]	chr13	1098726	2	EXON_SMALL	EXON_SMALL:SS5_PROX:INTRON	RUBCNL:RNU2-6P	ENSG00000102445.20:ENSG00000223336.1	ENST00000429979.6:ENST00000676114.1:ENST00000378781.7:ENST00000378797.6:ENST00000441284.6:ENST00000676307.1:ENST00000389908.7:ENST00000676063.1:ENST00000675992.1:ENST00000676051.1:ENST00000675291.1:ENST00000378787.7:ENST00000378784.8:ENST00000409879.6:ENST00000675585.1:ENST00000417405.2:ENST00000631139.2:ENST00000439642.1:ENST00000411404.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:nonsense_mediated_decay	76	176	2	1.70228	1.721465	1.74065	7.84235e-4	6.85108e-4	0.00977593	0.00837556
chr3	157153547	157153640	3833107	0	+	0.408602	(0.39,0.42]	chr3	326616	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201778.1	ENST00000364908.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	11	32	2	1.40975	1.7213349999999998	2.03292	0.0492699	0.00788976	0.177329	0.0522564
chr3	197783305	197783405	3991880	0	+	0.41	(0.39,0.42]	chr3	336452	15	UTR3	UTR3:EXON_MRNA	FYTTD1	ENSG00000122068.13	ENST00000241502.9	protein_coding	protein_coding	protein_coding	protein_coding	11	32	2	1.40975	1.7213349999999998	2.03292	0.0492699	0.00788976	0.177329	0.0522564
chr12	20551389	20551489	12774353	0	+	0.38	(0.36,0.39]	chr12	992181	1808	INTRON	INTRON	PDE3A	ENSG00000172572.7	ENST00000359062.4:ENST00000542675.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12314	30345	2	1.26622	1.721145	2.17607	0.00312963	1.4171900000000001e-06	0.0264375	5.8894e-5
chr1	46303766	46303820	178543	0	+	0.537037	(0.53,0.59]	chr1	23158	1	CDS_START	CDS_START:CDS:EXON_MRNA	UQCRH	ENSG00000173660.12	ENST00000311672.10:ENST00000489056.5:ENST00000486951.1:ENST00000496387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	155	2	1.59198	1.721075	1.85017	0.00298453	0.00116431	0.0255478	0.0131108
chrM	12431	12526	19377265	0	+	0.389474	(0.36,0.39]	chrM	1649828	2	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	127	311	2	1.51065	1.72099	1.93133	0.00134282	1.07988e-4	0.0145454	0.00192898
chr2	15467328	15467407	2529158	0	-	0.405063	(0.39,0.42]	chr2	227478	1	CDS	CDS:EXON_MRNA	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	7	21	2	1.66154	1.7204000000000002	1.77926	0.0452475	0.0429531	0.174743	0.161091
chr3	12609232	12609332	4041182	0	-	0.41	(0.39,0.42]	chr3	339251	1	CDS	CDS:UTR3:EXON_MRNA	RAF1	ENSG00000132155.13	ENST00000251849.9:ENST00000442415.7:ENST00000432427.2:ENST00000423275.5:ENST00000416093.1:ENST00000492690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	21	2	1.66154	1.7204000000000002	1.77926	0.0452475	0.0429531	0.174743	0.161091
chr7	26196806	26196906	8734102	0	-	0.36	(0.33,0.36]	chr7	666672	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	127	291	2	1.69326	1.7204000000000002	1.74754	4.30041e-4	3.49084e-4	0.00620274	0.0049063
chr8	38348071	38348171	9796171	0	-	0.47	(0.455,0.49]	chr8	740759	1	CDS_START	CDS_START:CDS:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1:ENST00000534539.1	protein_coding	protein_coding	protein_coding	protein_coding	7	23	2	1.68956	1.72	1.75044	0.0463133	0.0381365	0.170072	0.155455
chrX	154361978	154362063	19278116	0	-	0.552941	(0.53,0.59]	chrX	1638326	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	42	2	1.55616	1.7197149999999999	1.88327	0.0298124	0.018611	0.129773	0.0952021
chr3	9475482	9475566	3298364	0	+	0.535714	(0.53,0.59]	chr3	289607	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.19	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000459941.1:ENST00000466826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	30	2	1.39828	1.7193399999999999	2.0404	0.0486819	0.0362529	0.175495	0.148525
chr3	42647256	42647355	3436214	0	+	0.343434	(0.33,0.36]	chr3	298935	14	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.18	ENST00000429888.5:ENST00000232978.13:ENST00000617821.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	41	2	1.70162	1.71892	1.73622	0.0112523	0.0103915	0.0665375	0.063428
chr12	69587929	69588006	12943422	0	+	0.402597	(0.39,0.42]	chr12	1008968	1	CDS	CDS:EXON_MRNA	CCT2	ENSG00000166226.13	ENST00000546859.5:ENST00000299300.11:ENST00000551620.5:ENST00000550638.5:ENST00000544368.6:ENST00000550010.5:ENST00000543146.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	57	2	1.49547	1.71868	1.94189	0.0235423	0.00208619	0.111247	0.0196013
chr6	18307025	18307079	7622882	0	-	0.388889	(0.36,0.39]	chr6	580987	2	EXON_SMALL	EXON_SMALL	RNU6-263P	ENSG00000200681.1	ENST00000363811.1	snRNA	snRNA	snRNA	snRNA	30	77	2	1.53513	1.71856	1.90199	0.00799924	0.00132217	0.052263	0.0144203
chr5	139308056	139308146	6248868	0	+	0.377778	(0.36,0.39]	chr5	486959	7	CDS	CDS:EXON_MRNA:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000506147.5:ENST00000512107.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000509644.5:ENST00000512876.5:ENST00000513678.5:ENST00000513121.1:ENST00000504045.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000507860.1:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000514528.5:ENST00000504643.5:ENST00000515833.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	44	2	1.43546	1.718195	2.00093	0.0175981	0.00996106	0.0925619	0.0621728
chrX	23836837	23836934	19005196	0	-	0.391753	(0.39,0.42]	chrX	1617169	2	EXON_PSEUDO	EXON_PSEUDO:INTRON	APOO:RPL9P7	ENSG00000184831.14:ENSG00000238103.4	ENST00000379226.9:ENST00000633432.1:ENST00000634086.1:ENST00000476598.1:ENST00000439528.5:ENST00000490078.2:ENST00000633609.1:ENST00000330965.4	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:processed_pseudogene	11	34	2	1.66154	1.71793	1.77432	0.0452475	0.0100237	0.174743	0.0622514
chr17	47668335	47668410	16251822	0	+	0.48	(0.455,0.49]	chr17	1316692	3	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677036.1:ENST00000583013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	80	2	1.25887	1.717845	2.17682	0.0447993	2.64383e-4	0.173137	0.00394874
chr10	102163682	102163776	11226697	0	+	0.37234	(0.36,0.39]	chr10	854877	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NOLC1	ENSG00000166197.17	ENST00000405356.5:ENST00000605788.6:ENST00000603946.5:ENST00000370007.5:ENST00000477977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	27	2	1.48866	1.71779	1.94692	0.0390693	0.0192083	0.150084	0.0943643
chr1	145996422	145996500	1270290	0	-	0.358974	(0.33,0.36]	chr1	125553	3	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	33	83	2	1.55956	1.71774	1.87592	0.00940156	8.75122e-4	0.0591272	0.0101169
chr16	34267875	34267972	15924767	0	-	0.463918	(0.455,0.49]	chr16	1276975	20	EXON_PSEUDO	EXON_PSEUDO	BCLAF1P2	ENSG00000279800.2	ENST00000624956.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	11	35	2	1.64975	1.717645	1.78554	0.0228527	0.0178667	0.108215	0.0936098
chr18	657742	657842	16716886	0	+	0.79	(0.59,1]	chr18	1379265	1	CDS_START	CDS_START:CDS:EXON_MRNA	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	62	2	1.66201	1.71691	1.77181	0.0277662	0.0267363	0.125327	0.118611
chr10	5765711	5765809	11352452	0	-	0.336735	(0.33,0.36]	chr10	865733	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GDI2	ENSG00000057608.17	ENST00000380191.9:ENST00000479928.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	86	2	1.55956	1.7165650000000001	1.87357	0.00940156	7.95154e-4	0.0591272	0.009356
chr1	114720538	114720627	1239625	0	-	0.494382	(0.49,0.53]	chr1	121360	1	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000483030.1:ENST00000530784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	46	2	1.56396	1.71634	1.86872	0.0388812	0.00487661	0.158355	0.0366648
chrX	24078327	24078424	18616696	0	+	0.360825	(0.36,0.39]	chrX	1589843	17	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	18	50	2	1.65792	1.7162950000000001	1.77467	0.0204392	0.0041869	0.0988514	0.0328662
chr15	40036332	40036432	15230346	0	-	0.57	(0.53,0.59]	chr15	1198268	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SRP14	ENSG00000140319.11	ENST00000267884.11:ENST00000558527.5:ENST00000558720.5:ENST00000560773.5:ENST00000559439.5:ENST00000559475.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	74	2	1.62803	1.716275	1.80452	0.0114405	0.00416785	0.067083	0.032649
chr22	39318515	39318592	18513259	0	-	0.623377	(0.59,1]	chr22	1580620	2	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	RPL3	ENSG00000100316.16	ENST00000216146.9:ENST00000401609.5:ENST00000465618.5:ENST00000402527.5:ENST00000453303.5:ENST00000427905.5:ENST00000420536.1:ENST00000484615.5:ENST00000460589.5:ENST00000461967.1:ENST00000498462.1:ENST00000459859.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	28	186	2	1.60165	1.71548	1.82931	0.00796125	0.00317111	0.0525981	0.0267094
chr21	33554200	33554299	18101199	0	+	0.363636	(0.36,0.39]	chr21	1534527	36	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	22	2	1.61529	1.71482	1.81435	0.0466766	0.0302191	0.171348	0.129773
chr7	92615139	92615239	8924991	0	-	0.56	(0.53,0.59]	chr7	681137	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	36	2	1.653	1.71467	1.77634	0.0274587	0.025972	0.124024	0.117079
chr22	20953649	20953747	18300220	0	+	0.469388	(0.455,0.49]	chr22	1553647	40	UTR3	UTR3:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	37	117	2	1.17783	1.7139349999999998	2.25004	0.0270573	9.22137e-5	0.122277	0.0016906
chr16	9106938	9107038	15534200	0	+	0.55	(0.53,0.59]	chr16	1230410	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	C16orf72:RP11-473I1.9	ENSG00000182831.12:ENSG00000263244.2	ENST00000327827.12:ENST00000574285.2:ENST00000574616.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	48	2	1.48274	1.7138550000000001	1.94497	0.0371726	0.00618933	0.151929	0.0440521
chr6	35835108	35835205	7677931	0	-	0.402062	(0.39,0.42]	chr6	588535	23	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	43	2	1.54703	1.71375	1.88047	0.0167468	0.0102027	0.0885385	0.062872
chr3	128813422	128813520	3729270	0	+	0.479592	(0.455,0.49]	chr3	318662	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000675497.1:ENST00000674589.1:ENST00000485280.1:ENST00000483906.5:ENST00000676147.1:ENST00000674593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	44	2	1.62123	1.71372	1.80621	0.0148713	0.012455	0.0808715	0.0710484
chrX	136873841	136873941	19250711	0	-	0.34	(0.33,0.36]	chrX	1635446	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000496459.2:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	54	2	1.36542	1.7125500000000002	2.05968	0.0216178	0.00160617	0.103121	0.0169168
chr17	82088475	82088562	16710789	0	-	0.597701	(0.59,1]	chr17	1378211	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	16	105	2	1.46589	1.71238	1.9588699999999999	0.0220628	0.00670615	0.105595	0.0466206
chr1	154156859	154156956	1302307	0	-	0.453608	(0.42,0.455]	chr1	131065	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	44	133	2	1.37395	1.7121749999999998	2.0504	0.00912745	2.48091e-4	0.0578738	0.00374743
chr10	43396549	43396643	11461860	0	-	0.585106	(0.53,0.59]	chr10	873969	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7:ENST00000477108.5:ENST00000498176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	35	2	1.55135	1.7113399999999999	1.87133	0.0308819	0.0294511	0.130016	0.129773
chr4	2928814	2928911	4687492	0	+	0.56701	(0.53,0.59]	chr4	388871	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ADD1	ENSG00000087274.18	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000446856.5:ENST00000513328.6:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000398129.5:ENST00000513762.2:ENST00000538860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	35	2	1.55135	1.7113399999999999	1.87133	0.0308819	0.0294511	0.130016	0.129773
chr22	21920018	21920117	18443450	0	-	0.575758	(0.53,0.59]	chr22	1572559	7	UTR3	UTR3:EXON_MRNA	PPM1F	ENSG00000100034.14	ENST00000263212.10:ENST00000407142.5	protein_coding	protein_coding	protein_coding	protein_coding	8	32	2	1.653	1.710745	1.76849	0.0420665	0.0274587	0.158792	0.124024
chr4	77035787	77035885	4900544	0	+	0.336735	(0.33,0.36]	chr4	403559	14	UTR3	UTR3:EXON_MRNA:INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1:ENST00000515671.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	27	2	1.4550399999999999	1.710745	1.96645	0.0361848	0.0197415	0.145024	0.095966
chr3	194405229	194405327	4654492	0	-	0.387755	(0.36,0.39]	chr3	384345	27	UTR3	UTR3:EXON_MRNA	ATP13A3	ENSG00000133657.16	ENST00000439040.5:ENST00000645538.1:ENST00000645319.2:ENST00000642744.1:ENST00000645621.1:ENST00000429136.6:ENST00000461660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	32	2	1.52435	1.71069	1.89703	0.0275954	0.0150863	0.122332	0.0821417
chr3	38246074	38246147	3420040	0	+	0.479452	(0.455,0.49]	chr3	297208	1	CDS	CDS:EXON_MRNA	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	29	2	1.62042	1.71068	1.80094	0.0320389	0.0265942	0.133433	0.120205
chr11	66368536	66368603	12424338	0	-	0.641791	(0.59,1]	chr11	964653	1	CDS	CDS:EXON_MRNA	SLC29A2	ENSG00000174669.12	ENST00000311161.11:ENST00000357440.7:ENST00000544554.5:ENST00000540386.5:ENST00000619145.4:ENST00000546034.1:ENST00000541567.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	88	2	1.43238	1.7106050000000002	1.98883	0.0375521	0.00592324	0.153235	0.042792
chr20	56366287	56366386	17834365	0	+	0.363636	(0.36,0.39]	chr20	1507875	1	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	17	42	2	1.23245	1.7105650000000001	2.18868	0.0391448	0.00436393	0.150372	0.0340502
chrM	3975	4070	19377179	0	+	0.389474	(0.36,0.39]	chrM	1649799	8	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	146	364	2	1.65205	1.709095	1.76614	4.85344e-4	2.61856e-4	0.00681835	0.0039188
chr5	179730142	179730242	6414475	0	+	0.36	(0.33,0.36]	chr5	499211	16	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	74	2	1.32216	1.70865	2.09514	0.026666	3.81282e-4	0.120527	0.00528812
chr3	12840237	12840311	4042197	0	-	0.581081	(0.53,0.59]	chr3	339358	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2:ENST00000434963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	42	2	1.39693	1.70667	2.01641	0.0401297	0.0108917	0.153343	0.0645168
chr19	896688	896782	17417057	0	-	0.553191	(0.53,0.59]	chr19	1451986	3	UTR3	UTR3:EXON_MRNA	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	99	2	1.6489	1.70656	1.76422	0.00494646	0.00360508	0.0379986	0.0296421
chr16	75640183	75640266	16039211	0	-	0.481928	(0.455,0.49]	chr16	1288340	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	KARS1	ENSG00000065427.15	ENST00000319410.9:ENST00000302445.8:ENST00000568378.5:ENST00000564578.5:ENST00000562875.5:ENST00000566560.5:ENST00000566249.5:ENST00000568682.5:ENST00000570215.1:ENST00000565738.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	59	2	1.52484	1.706505	1.88817	0.028215	0.00224705	0.127287	0.020783
chr4	108667265	108667357	5038565	0	+	0.380435	(0.36,0.39]	chr4	409875	1	UTR3	UTR3:EXON_MRNA	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding	12	31	2	1.39109	1.7061350000000002	2.02118	0.0313127	0.0251625	0.131233	0.117055
chr6	73520815	73520913	7796101	0	-	0.571429	(0.53,0.59]	chr6	597149	9	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	48	2	1.40773	1.705965	2.0042	0.0277483	0.0113999	0.125262	0.0668496
chrM	10666	10759	19377247	0	+	0.526882	(0.49,0.53]	chrM	1649824	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MT-ND4L	ENSG00000212907.2	ENST00000361335.1	protein_coding	protein_coding	protein_coding	protein_coding	222	709	2	1.68078	1.7059199999999999	1.73106	3.07828e-4	2.74187e-4	0.0047652	0.00406677
chr6	28158569	28158668	7105837	0	+	0.40404	(0.39,0.42]	chr6	543601	47	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	15	43	2	1.36883	1.705885	2.04294	0.0460844	0.00244376	0.169423	0.0229471
chr7	105113531	105113630	8449893	0	+	0.282828	[0,0.29]	chr7	645368	3	UTR3	UTR3:EXON_MRNA	KMT2E	ENSG00000005483.21	ENST00000334884.9:ENST00000257745.8:ENST00000311117.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	17	2	1.5959700000000001	1.70551	1.81505	0.0533838	0.0409713	0.184995	0.163285
chr6	63581246	63581344	7205086	0	+	0.255102	[0,0.29]	chr6	556541	12	UTR3	UTR3:EXON_MRNA	PTP4A1:RP5-1148A21.4	ENSG00000112245.13:ENSG00000285976.2	ENST00000648894.1:ENST00000673199.1:ENST00000672924.1:ENST00000370651.7:ENST00000626021.3:ENST00000673217.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	37	2	1.47763	1.70522	1.93281	0.0158862	0.01348	0.0856459	0.0751291
chr6	35833452	35833549	7677914	0	-	0.360825	(0.36,0.39]	chr6	588535	6	UTR3	UTR3:EXON_MRNA	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	54	2	1.53316	1.705085	1.87701	0.0138851	0.00378705	0.0760972	0.0307314
chr5	43289942	43290041	6560157	0	-	0.323232	(0.29,0.33]	chr5	508332	26	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	15	32	2	1.57378	1.70502	1.83626	0.0310929	0.00763006	0.130369	0.050773
chr6	34287355	34287455	7672475	0	-	0.4	(0.39,0.42]	chr6	588026	78	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1	protein_coding	protein_coding	protein_coding	protein_coding	8	23	2	1.40975	1.70443	1.99911	0.0492699	0.0477207	0.17993	0.177329
chr3	47587130	47587228	4161752	0	-	0.438776	(0.42,0.455]	chr3	348302	20	UTR3	UTR3:EXON_MRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10	protein_coding	protein_coding	protein_coding	protein_coding	18	52	2	1.14232	1.7044199999999998	2.26652	0.0524422	0.00146622	0.18423900000000001	0.0157384
chr5	138391492	138391588	6244192	0	+	0.4375	(0.42,0.455]	chr5	486509	6	CDS	CDS:UTR3:EXON_MRNA:INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	31	2	1.43354	1.70431	1.97508	0.0450749	0.0147202	0.167319	0.0802571
chr3	31636064	31636161	3392497	0	+	0.463918	(0.455,0.49]	chr3	295101	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	STT3B	ENSG00000163527.10	ENST00000295770.4:ENST00000463044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	37	2	1.50336	1.703845	1.90433	0.0237023	0.0185466	0.109365	0.0932453
chr19	3980840	3980909	17430224	0	-	0.695652	(0.59,1]	chr19	1454712	1	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000598182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	35	235	2	1.55735	1.70343	1.84951	0.0113593	0.00139152	0.0670865	0.0143871
chrX	48576507	48576604	18692235	0	+	0.525773	(0.49,0.53]	chrX	1594203	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RBM3	ENSG00000102317.18	ENST00000472897.5:ENST00000376759.8:ENST00000466764.5:ENST00000490127.5:ENST00000489344.5:ENST00000376755.1:ENST00000354480.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	60	2	1.40688	1.703415	1.99995	0.0250864	0.00253611	0.116852	0.0227257
chr7	43645324	43645399	8793977	0	-	0.52	(0.49,0.53]	chr7	670408	2	CDS	CDS:EXON_MRNA	COA1	ENSG00000106603.20	ENST00000415076.6:ENST00000446330.6:ENST00000446564.5:ENST00000438444.5:ENST00000490251.1:ENST00000223336.11:ENST00000310564.10:ENST00000395879.5:ENST00000415798.5:ENST00000431651.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	31	2	1.46766	1.703315	1.93897	0.0523669	0.0151118	0.194793	0.0820541
chrX	41347789	41347859	18669496	0	+	0.371429	(0.36,0.39]	chrX	1592241	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX3X	ENSG00000215301.11	ENST00000625837.2:ENST00000626301.2:ENST00000629785.2:ENST00000630255.2:ENST00000630370.2:ENST00000630858.2:ENST00000629496.3:ENST00000478993.5:ENST00000457138.7:ENST00000644876.2:ENST00000399959.7:ENST00000644074.1:ENST00000645338.1:ENST00000646196.1:ENST00000642793.1:ENST00000646940.1:ENST00000644307.1:ENST00000645561.1:ENST00000645080.1:ENST00000642597.1:ENST00000642722.1:ENST00000644109.1:ENST00000644958.1:ENST00000646122.1:ENST00000644513.1:ENST00000645589.1:ENST00000441189.4:ENST00000646822.1:ENST00000646223.1:ENST00000643963.1:ENST00000646319.1:ENST00000644073.1:ENST00000644677.1:ENST00000642322.1:ENST00000645120.1:ENST00000646107.1:ENST00000646627.1:ENST00000642589.1:ENST00000645380.1:ENST00000646390.1:ENST00000642424.1:ENST00000642161.1:ENST00000645574.1:ENST00000646679.1:ENST00000647286.1:ENST00000642687.1:ENST00000642801.1:ENST00000616050.3:ENST00000647477.1:ENST00000611968.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	35	2	1.22474	1.70331	2.18188	0.0514	0.00600314	0.192748	0.042887
chr15	52547742	52547842	15287465	0	-	0.28	[0,0.29]	chr15	1206631	8	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9	protein_coding	protein_coding	protein_coding	protein_coding	12	23	2	1.67789	1.702975	1.72806	0.0359089	0.0213728	0.144663	0.102744
chr4	1745013	1745092	4681148	0	+	0.594937	(0.59,1]	chr4	388005	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TACC3	ENSG00000013810.21	ENST00000651472.1:ENST00000612220.5:ENST00000313288.9:ENST00000652770.1:ENST00000651251.1:ENST00000651817.1:ENST00000484264.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	55	2	1.58352	1.7024050000000002	1.82129	0.0477456	0.0227814	0.179958	0.105293
chr16	2771214	2771303	15494997	0	+	0.516854	(0.49,0.53]	chr16	1227823	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574331.5:ENST00000573692.1:ENST00000570539.1:ENST00000573583.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	53	2	1.60882	1.702345	1.79587	0.0123341	0.0106263	0.0705839	0.0646667
chr1	32333932	32334027	922169	0	-	0.431579	(0.42,0.455]	chr1	97099	2	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	24	70	2	1.49778	1.7022	1.90662	0.00997449	0.0031474	0.0622078	0.0265484
chr20	53097651	53097734	17824464	0	+	0.554217	(0.53,0.59]	chr20	1507533	1	EXON_SMALL	EXON_SMALL:INTRON	TSHZ2:RN7SKP184	ENSG00000182463.16:ENSG00000199218.1	ENST00000371497.10:ENST00000362348.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	22	83	2	1.56085	1.701025	1.8412	0.00855199	0.00429353	0.0551341	0.0336045
chr21	43776203	43776269	18273594	0	-	0.742424	(0.59,1]	chr21	1549774	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	CSTB	ENSG00000160213.9	ENST00000639959.1:ENST00000640406.1:ENST00000480147.3:ENST00000675996.1:ENST00000291568.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	61	2	1.61635	1.70073	1.78511	0.0315401	0.0261127	0.131907	0.118976
chr2	61877392	61877453	2691425	0	-	0.409836	(0.39,0.42]	chr2	240565	1	CDS	CDS:EXON_MRNA	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	28	66	2	1.05298	1.70023	2.34748	0.0405639	0.00178189	0.153496	0.0182044
chr1	244854053	244854152	1591274	0	-	0.353535	(0.33,0.36]	chr1	158388	39	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	81	2	1.47303	1.7000600000000001	1.92709	0.00843295	9.62459e-4	0.0544542	0.0115185
chr3	141926077	141926172	3790197	0	+	0.4	(0.39,0.42]	chr3	323508	5	UTR3	UTR3:EXON_MRNA	ATP1B3	ENSG00000069849.11	ENST00000465172.5:ENST00000286371.8:ENST00000466678.5:ENST00000462082.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	54	2	1.6973800000000001	1.700055	1.70273	0.00992495	0.00720594	0.0621158	0.0483643
chr2	138278937	138279028	2093650	0	+	0.373626	(0.36,0.39]	chr2	195841	5	EXON_PSEUDO	EXON_PSEUDO	RPL15P5	ENSG00000233045.1	ENST00000429515.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	29	80	2	1.53316	1.6997	1.86624	0.0138851	0.00103027	0.0760972	0.0114563
chr22	39520651	39520746	18370784	0	+	0.673684	(0.59,1]	chr22	1563259	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATF4	ENSG00000128272.17	ENST00000404241.6:ENST00000674920.3:ENST00000679776.1:ENST00000337304.2:ENST00000675582.2:ENST00000396680.3:ENST00000676346.2:ENST00000680446.1:ENST00000674568.2:ENST00000680748.1:ENST00000674835.2	protein_coding	protein_coding	protein_coding	protein_coding	10	68	2	1.61635	1.6990349999999999	1.78172	0.0315401	0.0185954	0.131907	0.0933517
chr1	23071291	23071359	97659	0	+	0.485294	(0.455,0.49]	chr1	11269	2	CDS	CDS:EXON_MRNA	KDM1A	ENSG00000004487.17	ENST00000465864.2:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding	12	38	2	1.68378	1.698705	1.71363	0.0246293	0.0145129	0.114941	0.0790584
chr18	31545812	31545904	16809157	0	+	0.369565	(0.36,0.39]	chr18	1386480	2	CDS	CDS:EXON_MRNA	DSG2	ENSG00000046604.14	ENST00000261590.13	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.66836	1.69848	1.7286	0.0474647	0.0227476	0.17993	0.105293
chr17	35595061	35595159	16206182	0	+	0.397959	(0.39,0.42]	chr17	1309012	6	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000589774.5:ENST00000616784.4:ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000621668.4:ENST00000610402.5:ENST00000612035.4:ENST00000591610.5:ENST00000590538.5:ENST00000614600.4:ENST00000590432.5:ENST00000612116.5:ENST00000618940.4:ENST00000588093.1:ENST00000592167.5:ENST00000593014.3:ENST00000628168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	27	2	1.66154	1.69838	1.73522	0.0452475	0.0216784	0.174743	0.103158
chr17	82083275	82083350	16710721	0	-	0.693333	(0.59,1]	chr17	1378168	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	9	57	2	1.43238	1.69827	1.96416	0.044741	0.0375521	0.166115	0.153235
chr11	9408505	9408605	11792494	0	+	0.4	(0.39,0.42]	chr11	902819	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8:ENST00000533233.1:ENST00000527431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	42	2	1.40371	1.6981549999999999	1.9926	0.0464207	0.00367258	0.17732	0.0300803
chr6	34285262	34285361	7672454	0	-	0.444444	(0.42,0.455]	chr6	588026	57	UTR3	UTR3:EXON_MRNA	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1	protein_coding	protein_coding	protein_coding	protein_coding	11	33	2	1.43196	1.697965	1.96397	0.0399324	0.0138503	0.162323	0.0759947
chr6	49605270	49605367	7729592	0	-	0.237113	[0,0.29]	chr6	592928	2	UTR3	UTR3:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1	protein_coding	protein_coding	protein_coding	protein_coding	79	154	2	1.67545	1.697635	1.71982	0.0010179	8.87329e-4	0.0120926	0.0101877
chr3	4983979	4984075	3277650	0	+	0.479167	(0.455,0.49]	chr3	288722	4	UTR3	UTR3:EXON_MRNA	BHLHE40	ENSG00000134107.5	ENST00000256495.4	protein_coding	protein_coding	protein_coding	protein_coding	21	64	2	1.5857	1.697355	1.80901	0.00771169	0.00693404	0.0505518	0.0473133
chr19	3976653	3976747	17430175	0	-	0.648936	(0.59,1]	chr19	1454685	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	78	503	2	1.68936	1.6972399999999999	1.70512	0.00245457	0.00157844	0.0230058	0.0157756
chr14	101766356	101766455	14493254	0	+	0.333333	(0.33,0.36]	chr14	1132783	12	UTR3	UTR3:EXON_MRNA:INTRON	PPP2R5C	ENSG00000078304.19	ENST00000422945.6:ENST00000554442.5:ENST00000556068.5:ENST00000556260.6:ENST00000328724.9:ENST00000557268.5:ENST00000554504.1:ENST00000553890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	59	2	1.20971	1.6970900000000002	2.18447	0.0442815	5.3244e-4	0.172163	0.00683716
chr4	75645613	75645702	5472869	0	-	0.449438	(0.42,0.455]	chr4	438364	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000679329.1:ENST00000677794.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	29	2	1.63927	1.69698	1.75469	0.0455517	0.0198622	0.175554	0.0984041
chr4	83462651	83462735	5500217	0	-	0.392857	(0.39,0.42]	chr4	440772	2	CDS	CDS:UTR3:EXON_MRNA	ABRAXAS1	ENSG00000163322.14	ENST00000321945.12:ENST00000475656.6:ENST00000506553.5:ENST00000504777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	32	2	1.65092	1.6963650000000001	1.74181	0.0245629	0.0216584	0.114841	0.103121
chr1	29117307	29117404	121622	0	+	0.546392	(0.53,0.59]	chr1	14751	6	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	58	2	1.67949	1.695545	1.7116	0.0184962	0.00790557	0.0932453	0.0516646
chr7	92607697	92607797	8924916	0	-	0.39	(0.36,0.39]	chr7	681136	29	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	9	24	2	1.66365	1.6951	1.72655	0.0345996	0.033108	0.143631	0.13754
chr17	82464355	82464430	16383465	0	+	0.48	(0.455,0.49]	chr17	1332618	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NARF	ENSG00000141562.18	ENST00000579198.5:ENST00000390006.8:ENST00000583181.5:ENST00000584192.5:ENST00000580296.5:ENST00000345415.11:ENST00000412079.6:ENST00000581202.5:ENST00000374611.9:ENST00000457415.7:ENST00000581795.5:ENST00000584411.5:ENST00000577812.5:ENST00000581743.5:ENST00000577432.5:ENST00000582907.5:ENST00000309794.16:ENST00000578082.5:ENST00000580748.1:ENST00000577410.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	43	2	1.56242	1.694855	1.82729	0.0198935	0.0107306	0.0966287	0.0652734
chr1	225983701	225983801	1531402	0	-	0.35	(0.33,0.36]	chr1	153219	11	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	15	37	2	1.57175	1.694655	1.81756	0.0223533	0.013343	0.106046	0.0743286
chr6	67888844	67888943	7784149	0	-	0.484848	(0.455,0.49]	chr6	596229	20	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	18	55	2	1.19381	1.694605	2.1954	0.0502935	0.00127219	0.188639	0.0135105
chr1	26475646	26475745	109600	0	+	0.373737	(0.36,0.39]	chr1	13089	6	UTR3	UTR3:EXON_MRNA	HMGN2	ENSG00000198830.11	ENST00000361427.6:ENST00000619352.4	protein_coding	protein_coding	protein_coding	protein_coding	11	29	2	1.66035	1.694475	1.7286	0.026191	0.0227476	0.119224	0.105293
chrX	65741736	65741833	18716383	0	+	0.43299	(0.42,0.455]	chrX	1596885	20	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	17	51	2	1.44537	1.69446	1.9435500000000001	0.0212742	0.00507333	0.102872	0.0389088
chr4	17624482	17624579	4734391	0	+	0.412371	(0.39,0.42]	chr4	392802	8	UTR3	UTR3:EXON_MRNA:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	29	2	1.51702	1.694105	1.87119	0.0373134	0.0277255	0.152293	0.122886
chr20	41123792	41123892	17790174	0	+	0.42	(0.39,0.42]	chr20	1503539	6	UTR3	UTR3:EXON_MRNA	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1:ENST00000681392.1:ENST00000681884.1:ENST00000680945.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	35	2	1.59402	1.693895	1.79377	0.0299302	0.0167404	0.129773	0.088513
chr12	118246083	118246180	13108947	0	+	0.731959	(0.59,1]	chr12	1023124	1	EXON_PSEUDO	EXON_PSEUDO	RPS2P5	ENSG00000240342.3	ENST00000488803.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	59	359	2	1.16311	1.693405	2.2237	0.0225733	2.42699e-4	0.10505	0.00399348
chr19	3976151	3976251	17430169	0	-	0.47	(0.455,0.49]	chr19	1454681	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	352	1171	2	1.32217	1.6927249999999998	2.06328	0.00325809	1.14545e-5	0.0282494	3.0895e-4
chr1	31291912	31292006	918615	0	-	0.457447	(0.455,0.49]	chr1	96208	1	CDS	CDS:EXON_MRNA	SNRNP40	ENSG00000060688.13	ENST00000263694.9	protein_coding	protein_coding	protein_coding	protein_coding	8	25	2	1.51376	1.69228	1.8708	0.0475178	0.0324007	0.17993	0.134751
chr16	28835277	28835338	15620385	0	+	0.639344	(0.59,1]	chr16	1238472	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000564035.5:ENST00000562583.5:ENST00000566946.5:ENST00000561732.1:ENST00000562686.1:ENST00000569318.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	23	157	2	1.18569	1.6922199999999998	2.19875	0.0486001	6.48151e-4	0.182642	0.00802272
chr1	65255745	65255844	249855	0	+	0.444444	(0.42,0.455]	chr1	28627	7	INTRON	INTRON	DNAJC6	ENSG00000116675.16	ENST00000463018.5:ENST00000494710.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	62	2	1.05021	1.6915149999999999	2.33282	0.0408125	0.00677333	0.15442	0.0462932
chr8	38270989	38271088	9795365	0	-	0.313131	(0.29,0.33]	chr8	740626	14	UTR3	UTR3:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13	protein_coding	protein_coding	protein_coding	protein_coding	12	25	2	1.38088	1.6914449999999999	2.00201	0.0529272	0.0134564	0.195536	0.0744942
chr22	20951308	20951405	18300196	0	+	0.309278	(0.29,0.33]	chr22	1553647	16	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	66	149	2	1.34848	1.691095	2.03371	0.00972363	9.18551e-5	0.0609308	0.0016906
chr17	76564281	76564378	16359192	0	+	0.494845	(0.49,0.53]	chr17	1328581	13	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	14	45	2	1.34567	1.6910150000000002	2.03636	0.0355671	0.00653228	0.14337	0.0454205
chr7	150952681	150952767	9128684	0	-	0.593023	(0.59,1]	chr7	697478	4	CDS	CDS:EXON_MRNA	KCNH2	ENSG00000055118.17	ENST00000262186.10:ENST00000684241.1:ENST00000330883.9:ENST00000532957.5:ENST00000473610.5:ENST00000461280.2:ENST00000684116.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	21	135	2	1.53335	1.690865	1.84838	0.0119425	0.00669215	0.069905900000000007	0.0459821
chr5	57176018	57176114	5978371	0	+	0.333333	(0.33,0.36]	chr5	468914	7	UTR5	UTR5:EXON_MRNA	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	9	23	2	1.65713	1.69058	1.72403	0.0528205	0.0238301	0.195536	0.109562
chr20	17607542	17607641	17717456	0	+	0.282828	[0,0.29]	chr20	1495347	5	UTR3	UTR3:EXON_MRNA	DSTN	ENSG00000125868.16	ENST00000246069.12:ENST00000474024.5	protein_coding	protein_coding	protein_coding	protein_coding	13	28	2	1.65878	1.69011	1.72144	0.0389538	0.0143878	0.158558	0.0784611
chr2	177220785	177220885	2228551	0	+	0.33	(0.29,0.33]	chr2	203394	16	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	62	2	1.55348	1.68974	1.826	0.00692879	0.00370336	0.0473262	0.0310195
chr1	112670824	112670923	411480	0	+	0.30303	(0.29,0.33]	chr1	40540	8	UTR3	UTR3:EXON_MRNA	CAPZA1	ENSG00000116489.13	ENST00000263168.4	protein_coding	protein_coding	protein_coding	protein_coding	34	76	2	1.37617	1.6888450000000002	2.00152	0.0186632	5.20512e-4	0.0934721	0.0067363
chr1	32771258	32771357	130785	0	+	0.585859	(0.53,0.59]	chr1	16158	15	CDS	CDS:EXON_MRNA:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	1.39693	1.688105	1.97928	0.0401297	0.0218546	0.153343	0.104785
chr19	1241850	1241950	17192014	0	+	0.81	(0.59,1]	chr19	1411823	1	CDS_START	CDS_START:CDS:EXON_MRNA	ATP5F1D	ENSG00000099624.8	ENST00000395633.5:ENST00000215375.7:ENST00000592624.1:ENST00000590265.5:ENST00000588538.5:ENST00000591660.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	77	2	1.41508	1.68769	1.9603	0.0340591	0.0141758	0.141491	0.0776158
chr17	35847102	35847172	16208775	0	+	0.442857	(0.42,0.455]	chr17	1309292	1	UTR3	UTR3:EXON_MRNA:INTRON	TAF15	ENSG00000270647.6	ENST00000605844.6:ENST00000603777.5:ENST00000604841.5:ENST00000604694.1:ENST00000603967.1	protein_coding	protein_coding	protein_coding	protein_coding	16	48	2	1.49513	1.6868500000000002	1.87857	0.0173834	0.00949283	0.0917737	0.0596168
chr4	82842224	82842310	5496660	0	-	0.604651	(0.59,1]	chr4	440195	2	CDS	CDS:EXON_MRNA:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	155	2	1.35048	1.68656	2.02264	0.0420215	0.00106443	0.16666	0.0118106
chr7	76329377	76329476	8863409	0	-	0.494949	(0.49,0.53]	chr7	677476	27	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	22	73	2	1.31042	1.68628	2.06214	0.0287389	0.00105153	0.128869	0.0116782
chr2	55049836	55049929	2666889	0	-	0.763441	(0.59,1]	chr2	238530	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RTN4	ENSG00000115310.18	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000402434.6:ENST00000427710.5	protein_coding	protein_coding	protein_coding	protein_coding	14	86	2	1.36954	1.686255	2.00297	0.0302558	0.0125191	0.130016	0.0713905
chr6	30705998	30706098	7659057	0	-	0.55	(0.53,0.59]	chr6	584223	25	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8:ENST00000417033.1:ENST00000492462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	32	2	1.33144	1.6859199999999999	2.0404	0.0496669	0.0362529	0.178721	0.148525
chr2	174248451	174248525	3022060	0	-	0.72973	(0.59,1]	chr2	267484	1	UTR5	UTR5:EXON_MRNA	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6	protein_coding	protein_coding	protein_coding	protein_coding	9	59	2	1.58029	1.6854	1.79051	0.0396851	0.0275445	0.161349	0.122112
chr10	68983498	68983596	11093412	0	+	0.346939	(0.33,0.36]	chr10	843302	8	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	30	70	2	1.11711	1.6851699999999998	2.25323	0.0452516	2.60623e-4	0.174753	0.00391099
chr1	158611076	158611169	1322386	0	-	0.397849	(0.39,0.42]	chr1	134973	5	UTR3	UTR3:EXON_MRNA	SPTA1	ENSG00000163554.15	ENST00000643759.2	protein_coding	protein_coding	protein_coding	protein_coding	14	39	2	1.57821	1.6850399999999999	1.79187	0.020538	0.012522	0.0992467	0.0715544
chr14	39181569	39181666	14243325	0	+	0.494845	(0.49,0.53]	chr14	1114727	12	CDS	CDS:EXON_MRNA:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	91	2	1.14015	1.68486	2.22957	0.0427454	2.3255e-4	0.168094	0.00355595
chr2	86775282	86775381	1928608	0	+	0.252525	[0,0.29]	chr2	181779	20	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	13	26	2	1.63724	1.684585	1.73193	0.0255145	0.0218934	0.115596	0.104942
chr1	145996344	145996422	1270289	0	-	0.205128	[0,0.29]	chr1	125553	2	UTR5	UTR5:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	55	109	2	1.55413	1.68411	1.81409	0.00240772	0.00159651	0.021767	0.0169101
chr19	46788234	46788324	17595600	0	-	0.622222	(0.59,1]	chr19	1481430	4	UTR5	UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	9	59	2	1.49472	1.683845	1.87297	0.0371034	0.0308113	0.151849	0.130016
chrX	71300043	71300110	18730896	0	+	0.402985	(0.39,0.42]	chrX	1598444	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000373856.8:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000450092.6:ENST00000454976.2:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	34	2	1.40371	1.683675	1.96364	0.0464207	0.00890556	0.17732	0.0565003
chr7	153413696	153413792	9138922	0	-	0.666667	(0.59,1]	chr7	698694	23	EXON_LNCRNA	EXON_LNCRNA	LINC01287	ENSG00000234722.5	ENST00000647863.1:ENST00000453187.2:ENST00000664249.1:ENST00000663745.1:ENST00000659532.1:ENST00000670362.1:ENST00000669043.1:ENST00000662626.1:ENST00000669109.1:ENST00000657245.1:ENST00000662979.1:ENST00000666243.1:ENST00000661522.1:ENST00000660414.1:ENST00000669159.1:ENST00000658753.1:ENST00000671302.1:ENST00000668024.1:ENST00000669370.1:ENST00000667969.1:ENST00000669818.1:ENST00000661082.1:ENST00000653989.1:ENST00000665909.1:ENST00000658825.1:ENST00000669410.1:ENST00000664034.1:ENST00000670343.1:ENST00000670691.1:ENST00000416982.1	lncRNA	lncRNA	lncRNA	lncRNA	10	63	2	1.32184	1.68352	2.0452	0.0528519	0.0179494	0.195536	0.0939469
chr20	25863620	25863715	17936200	0	-	0.578947	(0.53,0.59]	chr20	1518560	5	INTRON	INTRON	FAM182B	ENSG00000175170.16	ENST00000478164.1:ENST00000662978.1:ENST00000657325.1:ENST00000485279.2:ENST00000582267.5:ENST00000661999.1	lncRNA	lncRNA	lncRNA	lncRNA	13	51	2	1.56485	1.6832850000000001	1.80172	0.0367536	0.00654985	0.145024	0.0454205
chr12	13046129	13046228	12742253	0	+	0.525253	(0.49,0.53]	chr12	990532	13	INTRON	INTRON	FAM234B	ENSG00000084444.14	ENST00000197268.13:ENST00000416494.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	792	2483	2	1.27613	1.6831550000000002	2.09018	0.0035586	7.36677e-6	0.029269	2.34657e-4
chr17	8222881	8222979	16432212	0	-	0.612245	(0.59,1]	chr17	1340375	7	EXON_LNCRNA	EXON_LNCRNA	LINC00324	ENSG00000178977.3	ENST00000315707.3	lncRNA	lncRNA	lncRNA	lncRNA	20	131	2	1.44409	1.6828150000000002	1.92154	0.0207134	0.00400031	0.100457	0.0324137
chr10	101785589	101785685	11665778	0	-	0.270833	[0,0.29]	chr10	889336	13	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	18	35	2	1.27043	1.68208	2.09373	0.0511974	0.00255158	0.182605	0.0234266
chr5	111499094	111499193	6761001	0	-	0.343434	(0.33,0.36]	chr5	519141	32	UTR3	UTR3:EXON_MRNA	STARD4	ENSG00000164211.13	ENST00000296632.8:ENST00000512160.5	protein_coding	protein_coding	protein_coding	protein_coding	16	39	2	1.54614	1.68185	1.81756	0.0223533	0.012766	0.106046	0.0725185
chr7	76328385	76328484	8863399	0	-	0.454545	(0.42,0.455]	chr7	677476	17	UTR3	UTR3:EXON_MRNA	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	28	85	2	1.63419	1.6814200000000001	1.72865	0.00749803	0.00256207	0.0499246	0.0229007
chr9	37357659	37357757	10255234	0	+	0.255102	[0,0.29]	chr9	771668	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	22	2	1.56356	1.68139	1.79922	0.0431251	0.0223458	0.161433	0.106042
chr22	20952673	20952771	18300210	0	+	0.346939	(0.33,0.36]	chr22	1553647	30	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	41	100	2	1.55688	1.681	1.80512	0.00707081	8.5305e-4	0.0478528	0.00995563
chr5	146130087	146130158	6891214	0	-	0.464789	(0.455,0.49]	chr5	527489	2	CDS	CDS:UTR3:EXON_MRNA	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000506231.6:ENST00000674471.1:ENST00000674181.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000504323.6:ENST00000674310.1:ENST00000508709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	25	2	1.43393	1.68085	1.92777	0.0573788	0.0286531	0.196772	0.128685
chr7	150325925	150326010	8614646	0	+	0.482353	(0.455,0.49]	chr7	657685	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZBED6CL:LRRC61	ENSG00000188707.6:ENSG00000127399.15	ENST00000343855.6:ENST00000463441.5:ENST00000323078.7:ENST00000493307.1:ENST00000359623.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	25	2	1.43393	1.68085	1.92777	0.0573788	0.0286531	0.196772	0.128685
chr19	18307179	18307274	17499069	0	-	0.473684	(0.455,0.49]	chr19	1468052	11	UTR3	UTR3:EXON_MRNA	LSM4	ENSG00000130520.11	ENST00000593829.6:ENST00000252816.10:ENST00000600289.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	54	2	1.49034	1.68049	1.87064	0.0154564	0.0068996	0.0836093	0.0470992
chr2	199783328	199783428	3116756	0	-	0.36	(0.33,0.36]	chr2	275025	221	INTRON	INTRON	FTCDNL1	ENSG00000226124.8	ENST00000416668.5:ENST00000420922.6	protein_coding	protein_coding	protein_coding	protein_coding	72	163	2	1.4359	1.680335	1.92477	0.00352306	3.07154e-4	0.0290232	0.00475513
chrX	154792149	154792249	19279950	0	-	0.57	(0.53,0.59]	chrX	1638776	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000417435.5:ENST00000488694.1:ENST00000369531.1:ENST00000471821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	69	2	1.56876	1.680285	1.79181	0.0177303	0.00443883	0.0918323	0.0340751
chr1	114725276	114725333	1239676	0	-	0.491228	(0.49,0.53]	chr1	121372	2	CDS	CDS:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5:ENST00000534699.5:ENST00000483030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	16	54	2	1.52104	1.68023	1.83942	0.0273533	0.00439273	0.123591	0.033761
chr11	64296087	64296138	11980249	0	+	0.470588	(0.455,0.49]	chr11	919144	2	EXON_SMALL	EXON_SMALL:INTRON	KCNK4:KCNK4-TEX40:Y_RNA	ENSG00000182450.13:ENSG00000257069.6:ENSG00000207024.1	ENST00000422670.7:ENST00000538846.1:ENST00000538767.1:ENST00000453423.5:ENST00000539651.1:ENST00000539086.5:ENST00000541349.5:ENST00000545838.1:ENST00000394525.6:ENST00000539216.1:ENST00000384297.1	misc_RNA	misc_RNA	misc_RNA:protein_coding:lncRNA	misc_RNA:protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	153	448	2	1.53639	1.67999	1.82359	0.00114802	1.47123e-4	0.0124874	0.00268878
chr3	134783495	134783555	4466120	0	-	0.6	(0.59,1]	chr3	371261	2	EXON_SMALL	EXON_SMALL:INTRON	RP11-22E12.1:RNA5SP141	ENSG00000286982.1:ENSG00000201413.1	ENST00000656103.1:ENST00000364543.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene:lncRNA	rRNA_pseudogene:lncRNA	241	1522	2	1.54367	1.67995	1.81623	0.00223086	6.20695e-4	0.0206414	0.00824933
chr12	64433413	64433508	12921965	0	+	0.463158	(0.455,0.49]	chr12	1007084	1	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000542958.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	34	2	1.5635	1.6797749999999998	1.79605	0.0427708	0.018773	0.168094	0.0958835
chr14	20609343	20609443	14518670	0	-	0.49	(0.455,0.49]	chr14	1136950	4	SS5_PROX	SS5_PROX:INTRON	RNASE11:RP11-14J7.7	ENSG00000173464.14:ENSG00000259060.7	ENST00000413502.1:ENST00000555283.1	protein_coding	protein_coding	protein_coding	protein_coding	245	715	2	1.51891	1.679615	1.84032	8.91827e-4	1.03466e-4	0.010856	0.00185534
chr12	55993602	55993702	12897159	0	+	0.45	(0.42,0.455]	chr12	1003857	15	UTR3	UTR3:EXON_MRNA	RAB5B	ENSG00000111540.16	ENST00000553116.5:ENST00000549505.5:ENST00000360299.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	51	2	1.54322	1.67907	1.81492	0.0142062	0.00912508	0.0777799	0.0578605
chr5	113017146	113017245	6153930	0	+	0.282828	[0,0.29]	chr5	480731	38	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	27	56	2	1.41259	1.67845	1.94431	0.0253408	0.00124766	0.117089	0.0132636
chr19	10678612	10678704	17226161	0	+	0.597826	(0.59,1]	chr19	1418857	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000590009.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1:ENST00000589485.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	73	2	1.60816	1.6775600000000002	1.74696	0.0256592	0.0204559	0.117611	0.0992616
chr1	31919065	31919164	921302	0	-	0.333333	(0.33,0.36]	chr1	96944	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000602683.5:ENST00000470404.5:ENST00000532001.6:ENST00000528253.3:ENST00000484483.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	82	184	2	1.39845	1.67691	1.95537	0.00459278	1.26773e-4	0.035102	0.00240546
chr5	154811576	154811640	6314984	0	+	0.46875	(0.455,0.49]	chr5	492507	2	CDS	CDS:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6:ENST00000524187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	40	2	1.52484	1.676065	1.82729	0.028215	0.0107306	0.127287	0.0652734
chr3	196075225	196075292	4663423	0	-	0.38806	(0.36,0.39]	chr3	385646	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000420415.5:ENST00000360110.9:ENST00000392396.7:ENST00000421258.1:ENST00000464011.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	36	2	1.47979	1.67543	1.87107	0.0319856	0.00923108	0.135058	0.0583477
chr1	150574673	150574772	1288924	0	-	0.444444	(0.42,0.455]	chr1	128249	6	UTR3	UTR3:EXON_MRNA:INTRON	MCL1	ENSG00000143384.14	ENST00000678770.1:ENST00000678610.1:ENST00000464132.2:ENST00000620947.4:ENST00000369026.3:ENST00000676522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	69	2	1.33043	1.6754250000000002	2.02042	0.0314579	0.00106343	0.132887	0.0117998
chr1	244408890	244408989	1590662	0	-	0.262626	[0,0.29]	chr1	158292	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-518L10.5:ADSS2	ENSG00000240963.1:ENSG00000035687.10	ENST00000417765.1:ENST00000366535.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	12	21	2	1.39854	1.6754	1.95226	0.0477167	0.0282226	0.17993	0.124386
chr8	23571497	23571583	9230713	0	+	0.697674	(0.59,1]	chr8	706559	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	193	2	1.65605	1.6749049999999999	1.69376	0.00634179	0.00502268	0.0446708	0.0371467
chr11	114402827	114402915	12150080	0	+	0.465909	(0.455,0.49]	chr11	935837	1	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBM7:RP11-212D19.4	ENSG00000076053.12:ENSG00000255663.1	ENST00000540163.5:ENST00000541475.5:ENST00000544313.5:ENST00000544582.1:ENST00000375490.10:ENST00000542140.5:ENST00000545678.1:ENST00000544347.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	34	2	1.5448	1.6744249999999998	1.80405	0.0314044	0.017721400000000002	0.131369	0.0918323
chr16	29806528	29806614	15626768	0	+	0.848837	(0.59,1]	chr16	1239312	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAZ	ENSG00000103495.14	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10	protein_coding	protein_coding	protein_coding	protein_coding	25	161	2	1.41675	1.67431	1.93187	0.0184229	0.00252869	0.0930831	0.0227138
chr7	74195880	74195976	8334069	0	+	0.520833	(0.49,0.53]	chr7	634971	7	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	30	2	1.56417	1.673625	1.78308	0.0425234	0.0289719	0.167547	0.127437
chr12	46183554	46183652	13313383	0	-	0.316327	(0.29,0.33]	chr12	1043464	6	UTR3	UTR3:EXON_MRNA	SLC38A1	ENSG00000111371.16	ENST00000398637.10	protein_coding	protein_coding	protein_coding	protein_coding	11	23	2	1.66607	1.672915	1.67976	0.0424383	0.023292	0.160073	0.110214
chr6	31830159	31830254	7116709	0	+	0.221053	[0,0.29]	chr6	546211	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	57	113	2	1.28419	1.6728049999999999	2.06142	0.0155087	1.36759e-4	0.0837884	0.0023253
chr8	100721948	100722039	9976146	0	-	0.241758	[0,0.29]	chr8	752718	5	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000318607.10:ENST00000519004.5:ENST00000522387.5:ENST00000523555.6:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	259	525	2	1.56067	1.67258	1.78449	9.64818e-4	1.12613e-4	0.0115185	0.00200014
chr7	135584919	135585007	8552669	0	+	0.352273	(0.33,0.36]	chr7	652719	2	CDS	CDS:EXON_MRNA	NUP205	ENSG00000155561.15	ENST00000285968.11	protein_coding	protein_coding	protein_coding	protein_coding	11	27	2	1.66025	1.672455	1.68466	0.0351252	0.0220685	0.145575	0.104519
chr5	33459694	33459777	5927433	0	+	0.518072	(0.49,0.53]	chr5	464417	1	CDS	CDS:UTR3:EXON_MRNA	TARS1	ENSG00000113407.14	ENST00000502553.5:ENST00000508361.5:ENST00000265112.8:ENST00000455217.6:ENST00000507716.5:ENST00000509731.5:ENST00000504698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	52	2	1.6049	1.67204	1.73918	0.0213952	0.00921595	0.102813	0.0582594
chr7	25123106	25123205	8730809	0	-	0.242424	[0,0.29]	chr7	666449	46	UTR3	UTR3:EXON_MRNA	CYCS	ENSG00000172115.9	ENST00000305786.7	protein_coding	protein_coding	protein_coding	protein_coding	42	79	2	1.34708	1.67192	1.99676	0.0132194	5.46808e-4	0.0740932	0.00755229
chr2	126696142	126696229	2056360	0	+	0.551724	(0.53,0.59]	chr2	192631	1	UTR3	UTR3:EXON_MRNA	GYPC	ENSG00000136732.16	ENST00000259254.9:ENST00000409836.3:ENST00000356887.12	protein_coding	protein_coding	protein_coding	protein_coding	10	37	2	1.45957	1.67142	1.88327	0.0324107	0.0298124	0.134785	0.129773
chr17	39202321	39202352	16219466	0	+	0.516129	(0.49,0.53]	chr17	1310960	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	52	2	1.43782	1.67141	1.905	0.0258099	0.00546488	0.118296	0.0401161
chr7	26208473	26208555	8183078	0	+	0.317073	(0.29,0.33]	chr7	624419	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5:ENST00000497498.1:ENST00000481300.1:ENST00000462165.2:ENST00000481057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	24	2	1.62619	1.67103	1.71587	0.0358231	0.0253939	0.147298	0.115076
chr6	35573681	35573779	7676278	0	-	0.357143	(0.33,0.36]	chr6	588423	2	UTR3	UTR3:EXON_MRNA	FKBP5	ENSG00000096060.15	ENST00000536438.5:ENST00000539068.5:ENST00000357266.9	protein_coding	protein_coding	protein_coding	protein_coding	10	24	2	1.52414	1.6708500000000002	1.81756	0.0461827	0.0223533	0.16975	0.106046
chr10	100361831	100361931	11219478	0	+	0.42	(0.39,0.42]	chr10	853930	10	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	28	76	2	1.47899	1.6703700000000001	1.86175	0.00686352	0.00605112	0.0471593	0.0437023
chr17	16441553	16441646	16142092	0	+	0.387097	(0.36,0.39]	chr17	1300762	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000658116.1:ENST00000475953.5:ENST00000470491.6:ENST00000581913.5:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	294	740	2	1.6001	1.6703350000000001	1.74057	4.85245e-4	1.68272e-4	0.00681794	0.00274115
chr15	70097683	70097782	15361978	0	-	0.676768	(0.59,1]	chr15	1213464	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TLE3	ENSG00000140332.17	ENST00000558939.5:ENST00000451782.7:ENST00000627388.2:ENST00000317509.12:ENST00000561453.5:ENST00000557997.5:ENST00000559191.5:ENST00000559574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	47	2	1.61229	1.6702650000000001	1.72824	0.0471232	0.0434296	0.179872	0.162491
chr8	47953862	47953919	9817370	0	-	0.350877	(0.33,0.36]	chr8	742903	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	11	26	2	1.52414	1.6699700000000002	1.8158	0.0461827	0.0161406	0.16975	0.0860154
chr6	67885969	67886068	7784120	0	-	0.414141	(0.39,0.42]	chr6	596226	17	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	51	139	2	1.62072	1.66966	1.7186	0.00186206	0.00169444	0.0179161	0.01759
chr16	31189729	31189794	15633461	0	+	0.492308	(0.49,0.53]	chr16	1241207	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5:ENST00000568901.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	59	2	1.26856	1.66964	2.07072	0.0541847	0.00130175	0.199653	0.0136967
chr8	100920394	100920493	9976220	0	-	0.383838	(0.36,0.39]	chr8	752728	40	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	YWHAZ	ENSG00000164924.18	ENST00000395958.6:ENST00000395957.6:ENST00000457309.2:ENST00000395956.7:ENST00000353245.7:ENST00000523848.5:ENST00000521309.5:ENST00000522542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	46	122	2	1.53375	1.669035	1.80432	0.00663892	6.455e-4	0.0456299	0.00799743
chr7	5530575	5530627	8659514	0	-	0.788462	(0.59,1]	chr7	662134	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6:ENST00000645025.1:ENST00000480301.1:ENST00000443528.5:ENST00000414620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	152	2	1.46807	1.6690049999999998	1.86994	0.0189043	0.00318373	0.0958835	0.0279527
chr6	67887164	67887263	7784132	0	-	0.606061	(0.59,1]	chr6	596229	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	73	458	2	1.4733	1.66743	1.86156	0.00528433	0.00104571	0.038981	0.0123012
chrX	153688574	153688674	18915555	0	+	0.7	(0.59,1]	chrX	1611153	1	CDS_START	CDS_START:CDS:EXON_MRNA	SLC6A8	ENSG00000130821.17	ENST00000253122.10	protein_coding	protein_coding	protein_coding	protein_coding	13	85	2	1.58771	1.667225	1.74674	0.0217013	0.0158071	0.103258	0.085143
chr21	8218188	8218287	18041200	0	+	0.525253	(0.49,0.53]	chr21	1530814	56	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2104	6538	2	1.64373	1.6669749999999999	1.69022	2.4333e-4	1.89018e-4	0.00399705	0.003022
chr19	3053636	3053727	17426918	0	-	0.604396	(0.59,1]	chr19	1453929	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000592414.1:ENST00000586742.5:ENST00000587393.5:ENST00000592330.5:ENST00000590067.5:ENST00000586839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	65	2	1.45712	1.66668	1.87624	0.0409956	0.0194045	0.155091	0.0944333
chr5	151806342	151806441	6299789	0	+	0.40404	(0.39,0.42]	chr5	491960	9	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	24	68	2	1.43305	1.6663350000000001	1.89962	0.0197317	0.00175269	0.095966	0.0171299
chr15	90969446	90969534	15439167	0	-	0.568182	(0.53,0.59]	chr15	1221345	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000556972.6:ENST00000361188.9:ENST00000643536.1:ENST00000555455.5:ENST00000560423.5:ENST00000442656.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	42	2	1.55135	1.66632	1.78129	0.0294511	0.0173127	0.129773	0.0914071
chr1	24670119	24670217	102150	0	+	0.602041	(0.59,1]	chr1	12021	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000474843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	85	2	1.46742	1.66625	1.86508	0.0335275	0.00977669	0.140586	0.0611493
chr19	3976553	3976653	17430174	0	-	0.62	(0.59,1]	chr19	1454684	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000600794.1	protein_coding	protein_coding	protein_coding	protein_coding	97	617	2	1.61846	1.666145	1.71383	0.00295591	0.00125333	0.0263109	0.0133154
chr6	32979979	32980055	7120884	0	+	0.407895	(0.39,0.42]	chr6	547287	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2:ENST00000482838.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	23	2	1.53821	1.66599	1.79377	0.0571218	0.0299302	0.196074	0.129773
chr12	4301889	4301988	12704462	0	+	0.282828	[0,0.29]	chr12	985544	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	CCND2:RP11-388F6.5	ENSG00000118971.9:ENSG00000285901.2	ENST00000676411.1:ENST00000676279.1:ENST00000648100.1:ENST00000674624.1:ENST00000261254.8:ENST00000675880.1:ENST00000675468.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	21	38	2	1.49363	1.665705	1.83778	0.0182345	0.00861873	0.0925808	0.0555459
chr4	76144389	76144473	5475487	0	-	0.488095	(0.455,0.49]	chr4	438927	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NUP54	ENSG00000138750.15	ENST00000507257.5:ENST00000264883.8:ENST00000502850.5:ENST00000514987.5:ENST00000512151.5:ENST00000504173.1:ENST00000515460.5:ENST00000514307.5:ENST00000506098.5:ENST00000508583.5:ENST00000514901.5:ENST00000510569.5:ENST00000510884.5:ENST00000513352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	28	2	1.53019	1.665565	1.80094	0.0428973	0.0265942	0.161091	0.120205
chr20	36048563	36048661	17956027	0	-	0.346939	(0.33,0.36]	chr20	1521358	31	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	22	52	2	1.65978	1.665025	1.67027	0.0114302	0.00647697	0.0674959	0.0452555
chr5	134925409	134925505	6846849	0	-	0.46875	(0.455,0.49]	chr5	523925	9	EXON_PSEUDO	EXON_PSEUDO	MTND5P11	ENSG00000248923.1	ENST00000511037.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	21	63	2	1.53539	1.6647	1.79401	0.0133381	0.00448115	0.0743878	0.0342902
chr8	116850649	116850749	10035199	0	-	0.43	(0.42,0.455]	chr8	755426	1	CDS_START	CDS_START:CDS:EXON_MRNA	RAD21	ENSG00000164754.15	ENST00000297338.7:ENST00000523986.5:ENST00000518055.1	protein_coding	protein_coding	protein_coding	protein_coding	13	41	2	1.44978	1.6644999999999999	1.87922	0.0463803	0.00619114	0.177188	0.0440614
chr21	25729630	25729694	18190606	0	-	0.359375	(0.33,0.36]	chr21	1544007	1	CDS	CDS:EXON_MRNA	ATP5PF	ENSG00000154723.13	ENST00000400099.5:ENST00000400093.3:ENST00000400087.7:ENST00000400090.7:ENST00000457143.6:ENST00000400094.5:ENST00000284971.8:ENST00000486002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	33	2	1.61152	1.664465	1.71741	0.0205125	0.0178699	0.0995152	0.0918323
chr3	129277598	129277685	3730640	0	+	0.344828	(0.33,0.36]	chr3	318988	3	UTR3	UTR3:EXON_MRNA	COPG1	ENSG00000181789.14	ENST00000314797.10:ENST00000515725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	28	63	2	1.35808	1.664435	1.97079	0.0127863	0.00446004	0.0725185	0.034679
chr9	112220881	112220980	10802891	0	-	0.333333	(0.33,0.36]	chr9	818409	33	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	16	39	2	1.62527	1.6644299999999999	1.70359	0.0245566	0.010539	0.114841	0.0644466
chr1	22092312	22092411	93087	0	+	0.252525	[0,0.29]	chr1	10799	9	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	19	36	2	1.58637	1.66422	1.74207	0.0192924	0.00924965	0.0967467	0.0586023
chr4	82359535	82359635	5493529	0	-	0.4	(0.39,0.42]	chr4	439987	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	47	123	2	1.55632	1.66398	1.77164	0.00303985	0.00146807	0.0269867	0.0149604
chrX	154398519	154398542	18917585	0	+	0.826087	(0.59,1]	chrX	1611803	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000479366.1:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	155	2	1.46742	1.6635499999999999	1.85968	0.0335275	0.00201259	0.140586	0.0190297
chr2	74152625	74152724	2740196	0	-	0.252525	[0,0.29]	chr2	243880	2	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	11	21	2	1.59833	1.663195	1.72806	0.0359089	0.0350112	0.145163	0.144663
chr1	32174474	32174573	127053	0	+	0.464646	(0.455,0.49]	chr1	15636	37	UTR3	UTR3:EXON_MRNA:INTRON	KPNA6:RP4-622L5.2	ENSG00000025800.14:ENSG00000250135.1	ENST00000373625.8:ENST00000515055.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	8	25	2	1.53019	1.66312	1.79605	0.0428973	0.0427708	0.168094	0.161091
chr17	64506206	64506293	16639792	0	-	0.609195	(0.59,1]	chr17	1368524	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDX5	ENSG00000108654.16	ENST00000225792.10:ENST00000678890.1:ENST00000676601.1:ENST00000676575.1:ENST00000676969.1:ENST00000678810.1:ENST00000585317.2:ENST00000678110.1:ENST00000676785.1:ENST00000585111.2:ENST00000577922.6:ENST00000450599.7:ENST00000678814.1:ENST00000677726.1:ENST00000579461.2:ENST00000540698.6:ENST00000581230.5:ENST00000581693.5:ENST00000582326.2:ENST00000578491.2:ENST00000578400.5:ENST00000581697.5:ENST00000581806.5:ENST00000585060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	74	2	1.28251	1.663065	2.04362	0.0380878	0.036186	0.155342	0.145024
chr16	28832186	28832257	15620342	0	+	0.633803	(0.59,1]	chr16	1238442	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-231C14.10:ATXN2L	ENSG00000288630.1:ENSG00000168488.19	ENST00000675058.1:ENST00000336783.9:ENST00000563314.5:ENST00000340394.12:ENST00000382686.8:ENST00000395547.6:ENST00000325215.10:ENST00000564304.5:ENST00000570200.5:ENST00000565971.5:ENST00000570284.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	13	83	2	1.38314	1.66226	1.94138	0.0378267	0.0100942	0.154319	0.0625146
chr1	30843822	30843918	123262	0	+	0.552083	(0.53,0.59]	chr1	15022	1	EXON_SMALL	EXON_SMALL	RN7SKP91	ENSG00000222784.1	ENST00000410852.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	128	441	2	1.03365	1.6620750000000002	2.2905	0.0210803	9.85461e-6	0.101973	2.98744e-4
chr16	51645774	51645863	15663182	0	+	0.52809	(0.49,0.53]	chr16	1244822	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	HNRNPA1P48	ENSG00000224578.5	ENST00000565308.2:ENST00000562726.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	30	2	1.46766	1.6608800000000001	1.8541	0.0523669	0.0205565	0.194793	0.0996997
chr6	67884575	67884674	7784106	0	-	0.434343	(0.42,0.455]	chr6	596226	3	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	74	208	2	1.39507	1.6601249999999999	1.92518	0.0041953	2.83206e-4	0.0328662	0.00453567
chrX	78126622	78126721	18747158	0	+	0.272727	[0,0.29]	chrX	1599855	9	UTR3	UTR3:EXON_MRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding	32	58	2	1.34052	1.6596199999999999	1.97872	0.0201293	0.00152019	0.0977508	0.0154234
chr15	41299039	41299139	14885411	0	+	0.24	[0,0.29]	chr15	1169280	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	12	24	2	1.43284	1.659135	1.88543	0.0411311	0.0226603	0.155568	0.10742
chr16	1962735	1962822	15823818	0	-	0.609195	(0.59,1]	chr16	1261859	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000532746.5:ENST00000533186.5:ENST00000526586.6:ENST00000529806.5:ENST00000534461.5:ENST00000527302.1:ENST00000526908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	40	256	2	1.61651	1.6590449999999999	1.70158	0.00531742	0.00343959	0.0391878	0.0292838
chr2	74154990	74155088	2740220	0	-	0.265306	[0,0.29]	chr2	243880	26	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	16	31	2	1.35092	1.65891	1.9669	0.0389938	0.00850217	0.149802	0.0550147
chrX	55020411	55020504	19084671	0	-	0.602151	(0.59,1]	chrX	1623759	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALAS2	ENSG00000158578.21	ENST00000396198.7:ENST00000650242.1:ENST00000335854.8:ENST00000498636.1:ENST00000463868.5:ENST00000493869.2:ENST00000477869.6:ENST00000455688.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	65	2	1.58029	1.65879	1.73729	0.0303312	0.0275445	0.129874	0.122112
chr11	34101037	34101135	11905505	0	+	0.346939	(0.33,0.36]	chr11	909587	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CAPRIN1	ENSG00000135387.21	ENST00000341394.9:ENST00000533657.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	25	2	1.65713	1.65869	1.66025	0.0528205	0.0220685	0.195536	0.104519
chr7	132785444	132785540	9075496	0	-	0.416667	(0.39,0.42]	chr7	692998	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	66	2	1.53337	1.6584699999999999	1.78357	0.00894431	0.00474988	0.0568143	0.0361846
chr1	159918205	159918304	1326669	0	-	0.59596	(0.59,1]	chr1	135579	2	UTR3	UTR3:EXON_MRNA	TAGLN2	ENSG00000158710.15	ENST00000368096.5:ENST00000368097.9	protein_coding	protein_coding	protein_coding	protein_coding	35	225	2	1.37361	1.6569	1.94019	0.0172117	0.00121484	0.0904327	0.0130039
chr11	62596457	62596532	12409402	0	-	0.453333	(0.42,0.455]	chr11	961069	1	CDS	CDS:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5:ENST00000527204.5:ENST00000531179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	28	2	1.63927	1.656895	1.67452	0.0455517	0.0264395	0.175554	0.117445
chr3	10150549	10150646	3302449	0	+	0.371134	(0.36,0.39]	chr3	290668	7	UTR3	UTR3:EXON_MRNA	VHL	ENSG00000134086.8	ENST00000256474.3:ENST00000345392.2	protein_coding	protein_coding	protein_coding	protein_coding	20	52	2	1.3054	1.6568800000000001	2.00836	0.038881	0.00190092	0.158355	0.0182799
chr12	98515681	98515774	13036526	0	+	0.634409	(0.59,1]	chr12	1014930	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TMPO	ENSG00000120802.14	ENST00000548911.1:ENST00000556029.6:ENST00000343315.9:ENST00000266732.8:ENST00000393053.6:ENST00000546828.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	78	2	1.59315	1.65686	1.72057	0.0314051	0.0182711	0.131369	0.0925808
chr6	30705106	30705205	7659048	0	-	0.575758	(0.53,0.59]	chr6	584223	16	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	16	55	2	1.4282	1.655735	1.88327	0.0298124	0.0155303	0.129773	0.0839791
chr22	30978510	30978608	18344872	0	+	0.438776	(0.42,0.455]	chr22	1559168	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TUG1	ENSG00000253352.10	ENST00000646496.1:ENST00000644773.2:ENST00000569384.2:ENST00000643920.1:ENST00000519077.4:ENST00000643071.1:ENST00000644027.1:ENST00000647354.1:ENST00000643553.1:ENST00000643077.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	33	2	1.63684	1.65568	1.67452	0.0264395	0.0246118	0.117445	0.114882
chr19	55674530	55674623	17397361	0	+	0.569892	(0.53,0.59]	chr19	1448950	6	UTR3	UTR3:EXON_MRNA	U2AF2	ENSG00000063244.13	ENST00000450554.6:ENST00000308924.9	protein_coding	protein_coding	protein_coding	protein_coding	35	126	2	1.49089	1.65536	1.81983	0.00609932	0.00200313	0.043929	0.0189669
chr11	46816335	46816404	12384260	0	-	0.42029	(0.42,0.455]	chr11	956208	3	CDS	CDS:EXON_MRNA	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7:ENST00000526496.1	protein_coding	protein_coding	protein_coding	protein_coding	8	25	2	1.58962	1.65479	1.71996	0.0542346	0.0352	0.199653	0.142054
chr19	11666356	11666452	17464491	0	-	0.53125	(0.53,0.59]	chr19	1462117	4	EXON_PSEUDO	EXON_PSEUDO	HNRNPA1P10	ENSG00000214223.4	ENST00000444945.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	10	38	2	1.60439	1.65409	1.70379	0.0330081	0.0243675	0.138711	0.111797
chr1	109426389	109426448	1220630	0	-	0.627119	(0.59,1]	chr1	119118	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	PSMA5	ENSG00000143106.13	ENST00000271308.9:ENST00000484563.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	57	2	1.45712	1.65366	1.8502	0.0409956	0.0334531	0.155091	0.140296
chr1	54226730	54226830	1028122	0	-	0.31	(0.29,0.33]	chr1	106759	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000326956.12:ENST00000528930.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	28	2	1.44593	1.6533099999999998	1.86069	0.0319221	0.021654	0.133433	0.103926
chr22	38506237	38506337	18509840	0	-	0.62	(0.59,1]	chr22	1580027	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000216019.11:ENST00000432525.5:ENST00000479734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	59	2	1.48516	1.653225	1.82129	0.047789	0.0227814	0.18008	0.105293
chr12	76048228	76048328	13423854	0	-	0.3	(0.29,0.33]	chr12	1056597	118	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000552013.1:ENST00000544816.5:ENST00000542344.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	58	2	1.17715	1.65136	2.12557	0.0392875	7.92405e-4	0.15986	0.00933379
chr21	33555291	33555391	18101210	0	+	0.47	(0.455,0.49]	chr21	1534527	47	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5:ENST00000421541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	37	2	1.47423	1.65076	1.82729	0.0418992	0.0107306	0.166188	0.0652734
chr15	44717974	44718066	14899984	0	+	0.206522	[0,0.29]	chr15	1171710	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000561424.5:ENST00000648006.3:ENST00000349264.10:ENST00000559220.1:ENST00000561139.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	71	2	1.29002	1.6505800000000002	2.01114	0.0280096	5.01033e-4	0.126406	0.00653592
chr6	67886068	67886168	7784121	0	-	0.5	(0.49,0.53]	chr6	596226	18	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	60	191	2	1.35301	1.650215	1.94742	0.00778969	2.24063e-4	0.051794	0.00344776
chr4	176329015	176329113	5242231	0	+	0.326531	(0.29,0.33]	chr4	421869	8	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	22	48	2	1.64083	1.65011	1.65939	0.0164315	0.00636195	0.0873033	0.0449937
chr22	37875925	37876011	18364662	0	+	0.523256	(0.49,0.53]	chr22	1562201	2	CDS	CDS:EXON_MRNA	EIF3L	ENSG00000100129.18	ENST00000412331.6:ENST00000624234.3:ENST00000381683.10:ENST00000652021.1:ENST00000477256.5:ENST00000406934.5:ENST00000482600.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	38	2	1.44609	1.649405	1.85272	0.0289833	0.0211739	0.127484	0.101864
chr19	6413738	6413831	17442179	0	-	0.236559	[0,0.29]	chr19	1456770	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000597656.5	protein_coding	protein_coding	protein_coding	protein_coding	49	92	2	1.63914	1.6492550000000001	1.65937	0.0029585	0.00246293	0.0263317	0.0222212
chr17	56891170	56891269	16608602	0	-	0.363636	(0.36,0.39]	chr17	1364075	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	TRIM25:MIR3614	ENSG00000121060.19:ENSG00000284542.1	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000573108.1:ENST00000537230.3:ENST00000581261.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript:primary_miRNA	8	21	2	1.43858	1.64866	1.85874	0.0581529	0.0415243	0.199345	0.164804
chrX	136875470	136875527	19250731	0	-	0.403509	(0.39,0.42]	chrX	1635455	1	CDS	CDS:UTR3:EXON_MRNA	RBMX	ENSG00000147274.14	ENST00000431446.7:ENST00000568578.5:ENST00000419968.6:ENST00000464781.5:ENST00000320676.11:ENST00000562646.5:ENST00000565438.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	34	2	1.50406	1.6479650000000001	1.79187	0.0413581	0.012522	0.164391	0.0715544
chr6	109366709	109366807	7886646	0	-	0.316327	(0.29,0.33]	chr6	603688	3	UTR3	UTR3:EXON_MRNA	CD164	ENSG00000135535.17	ENST00000310786.10:ENST00000413644.6:ENST00000504373.2:ENST00000415861.2:ENST00000324953.9:ENST00000275080.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	58	2	1.23476	1.64778	2.0608	0.0442258	7.27049e-4	0.172163	0.00870916
chr18	57601252	57601352	17137460	0	-	0.27	[0,0.29]	chr18	1407137	7	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10:ENST00000589314.1:ENST00000586807.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	33	2	1.59833	1.64777	1.69721	0.0350112	0.00983711	0.145163	0.0614205
chr19	28614630	28614730	17280941	0	+	0.38	(0.36,0.39]	chr19	1428124	23	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1	lncRNA	lncRNA	lncRNA	lncRNA	84	193	2	1.27727	1.6470249999999997	2.01678	0.00758115	1.28307e-4	0.0504749	0.00222099
chr2	49229802	49229902	2642436	0	-	0.41	(0.39,0.42]	chr2	237477	108	INTRON	INTRON	RP11-152D8.1	ENSG00000282998.1	ENST00000635306.1	lncRNA	lncRNA	lncRNA	lncRNA	47	119	2	1.45874	1.646255	1.83377	0.00484667	0.00124725	0.0373598	0.0132596
chr14	21210923	21211023	14520515	0	-	0.28	[0,0.29]	chr14	1137229	19	UTR3	UTR3:EXON_MRNA	HNRNPC	ENSG00000092199.18	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000449098.5:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000553444.1:ENST00000556897.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	51	2	1.5649	1.64623	1.72756	0.0197322	0.00363541	0.095966	0.0298137
chr4	112755815	112755866	5601610	0	-	0.431373	(0.42,0.455]	chr4	446906	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000202536.2	ENST00000365666.2	misc_RNA	misc_RNA	misc_RNA	misc_RNA	18	53	2	1.60466	1.6461299999999999	1.6876	0.0141514	0.0090249	0.0774533	0.0572373
chr6	34280076	34280176	7672402	0	-	0.53	(0.49,0.53]	chr6	588026	5	UTR3	UTR3:EXON_MRNA	NUDT3	ENSG00000272325.2	ENST00000607016.2	protein_coding	protein_coding	protein_coding	protein_coding	13	42	2	1.63631	1.645865	1.65542	0.0223637	0.0164123	0.104967	0.0873033
chr12	24813615	24813715	13255692	0	-	0.36	(0.33,0.36]	chr12	1038842	37	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	21	51	2	1.42742	1.64542	1.86342	0.0305501	0.00270082	0.130226	0.0236323
chr20	50082767	50082867	18004135	0	-	0.45	(0.42,0.455]	chr20	1525945	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.12	ENST00000341698.2:ENST00000340309.7:ENST00000415862.6:ENST00000371677.7:ENST00000625172.3:ENST00000557021.5:ENST00000617119.4:ENST00000396059.7:ENST00000371674.8:ENST00000371657.9:ENST00000420027.3:ENST00000483534.5:ENST00000492371.6:ENST00000486653.5:ENST00000490555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	49	2	1.41199	1.64528	1.87857	0.0212785	0.00949283	0.102887	0.0596168
chr19	57293488	57293585	17405795	0	+	0.298969	(0.29,0.33]	chr19	1450092	14	UTR3	UTR3:EXON_MRNA	ZNF460	ENSG00000197714.9	ENST00000360338.4	protein_coding	protein_coding	protein_coding	protein_coding	12	24	2	1.50286	1.644905	1.78695	0.035536	0.0289406	0.147135	0.127328
chr1	117523642	117523738	428169	0	+	0.364583	(0.36,0.39]	chr1	42266	5	UTR3	UTR3:EXON_MRNA:INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000422329.1	protein_coding	protein_coding	protein_coding	protein_coding	12	30	2	1.561	1.6448	1.7286	0.0292256	0.0227476	0.129773	0.105293
chr22	19471686	19471785	18433792	0	-	0.525253	(0.49,0.53]	chr22	1570910	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	UFD1	ENSG00000070010.19	ENST00000263202.15:ENST00000399523.5:ENST00000459854.5:ENST00000447868.5:ENST00000421968.6:ENST00000484101.5:ENST00000489406.1:ENST00000494054.1:ENST00000474226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	33	2	1.63631	1.644775	1.65324	0.0407792	0.0223637	0.163285	0.104967
chr12	54236764	54236864	13342894	0	-	0.5	(0.49,0.53]	chr12	1049602	54	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	20	62	2	1.45257	1.64433	1.83609	0.0141274	0.00765487	0.0773752	0.0509316
chr12	53040621	53040721	12884650	0	+	0.31	(0.29,0.33]	chr12	1001808	5	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	44	81	2	0.941065	1.6433875	2.34571	0.0511484	1.88401e-4	0.182443	0.0032588
chr6	67884176	67884276	7784102	0	-	0.47	(0.455,0.49]	chr6	596225	3	SS3_PROX	SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	77	221	2	1.54648	1.6431149999999999	1.73975	0.00175139	7.54374e-4	0.0171299	0.00942225
chr12	79775632	79775730	13433701	0	-	0.306122	(0.29,0.33]	chr12	1057192	22	UTR3	UTR3:EXON_MRNA	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546762.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	45	2	1.45777	1.642525	1.82728	0.0351908	0.00339294	0.145827	0.0283075
chr19	12938608	12938679	17238336	0	+	0.732394	(0.59,1]	chr19	1421040	1	UTR5	UTR5:EXON_MRNA	CALR	ENSG00000179218.15	ENST00000587486.6:ENST00000316448.10:ENST00000586967.2:ENST00000586760.2:ENST00000680816.1:ENST00000590325.1:ENST00000588454.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	175	2	1.33997	1.64151	1.94305	0.0179213	0.00303351	0.0938717	0.0269316
chr9	131140629	131140710	10495766	0	+	0.469136	(0.455,0.49]	chr9	793234	2	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000530863.1	protein_coding	protein_coding	protein_coding	protein_coding	17	51	2	1.40268	1.64114	1.8796	0.030667	0.00468325	0.130482	0.0357458
chr12	54282572	54282618	12891446	0	+	0.521739	(0.49,0.53]	chr12	1002926	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5:ENST00000679273.1:ENST00000678448.1:ENST00000677636.1:ENST00000677645.1:ENST00000677291.1:ENST00000678876.1:ENST00000677945.1:ENST00000678934.1:ENST00000678597.1:ENST00000678873.1:ENST00000678347.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	27	81	2	1.3082	1.6406450000000001	1.97309	0.0175804	0.00225306	0.0925619	0.0214076
chr12	98549952	98550051	13036885	0	+	0.30303	(0.29,0.33]	chr12	1014988	22	UTR3	UTR3:EXON_MRNA	TMPO	ENSG00000120802.14	ENST00000556029.6	protein_coding	protein_coding	protein_coding	protein_coding	29	59	2	1.59778	1.64056	1.68334	0.00799685	0.00513478	0.0527833	0.0379388
chr10	27136330	27136385	11423549	0	-	0.4	(0.39,0.42]	chr10	870972	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	YME1L1	ENSG00000136758.19	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000375972.7:ENST00000491542.6:ENST00000463270.1:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	31	2	1.63008	1.6404999999999998	1.65092	0.0358647	0.0216584	0.147298	0.103121
chr17	78224250	78224349	16368067	0	+	0.535354	(0.53,0.59]	chr17	1329653	7	UTR3	UTR3:EXON_MRNA	BIRC5	ENSG00000089685.15	ENST00000301633.8:ENST00000350051.8:ENST00000374948.6	protein_coding	protein_coding	protein_coding	protein_coding	10	36	2	1.39693	1.6401	1.88327	0.0401297	0.0298124	0.153343	0.129773
chr10	70422842	70422941	11100459	0	+	0.40404	(0.39,0.42]	chr10	844350	12	UTR3	UTR3:EXON_MRNA	EIF4EBP2	ENSG00000148730.7	ENST00000373218.5	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.53821	1.6400100000000002	1.74181	0.0571218	0.0245629	0.196074	0.114841
chr6	26123523	26123623	7647050	0	-	0.65	(0.59,1]	chr6	582517	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	H2BC4	ENSG00000180596.7	ENST00000314332.5:ENST00000396984.1	protein_coding	protein_coding	protein_coding	protein_coding	24	150	2	1.39829	1.63984	1.88139	0.0197909	0.00376942	0.0961478	0.0305905
chr20	44908033	44908133	17799167	0	+	0.41	(0.39,0.42]	chr20	1504696	17	UTR3	UTR3:EXON_MRNA	YWHAB	ENSG00000166913.13	ENST00000353703.9:ENST00000372839.7	protein_coding	protein_coding	protein_coding	protein_coding	9	25	2	1.63008	1.63971	1.64934	0.0412247	0.0358647	0.155868	0.147298
chr2	176326824	176326901	2225055	0	+	0.350649	(0.33,0.36]	chr2	203284	1	CDS	CDS:UTR3:EXON_MRNA	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	24	2	1.4550399999999999	1.63949	1.82394	0.0494504	0.0361848	0.18557	0.145024
chr12	56272189	56272288	13349839	0	-	0.464646	(0.455,0.49]	chr12	1051002	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CS	ENSG00000062485.19	ENST00000351328.8:ENST00000549143.5:ENST00000548567.5:ENST00000548746.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	111	2	1.43552	1.637745	1.83997	0.014397	7.38944e-4	0.0786099	0.00884861
chr9	124415363	124415425	10850142	0	-	0.548387	(0.53,0.59]	chr9	821925	1	CDS_START	CDS_START:CDS:EXON_MRNA	PSMB7	ENSG00000136930.13	ENST00000259457.8:ENST00000441097.1	protein_coding	protein_coding	protein_coding	protein_coding	9	34	2	1.48483	1.636675	1.78852	0.0472509	0.0249781	0.172726	0.116495
chr7	107160938	107161035	8455228	0	+	0.28866000000000003	[0,0.29]	chr7	645853	15	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	22	41	2	1.51428	1.635895	1.75751	0.0187098	0.00746821	0.0934721	0.049405
chr19	58555899	58555993	17643527	0	-	0.521277	(0.49,0.53]	chr19	1491151	3	UTR3	UTR3:EXON_MRNA	UBE2M	ENSG00000130725.8	ENST00000253023.8	protein_coding	protein_coding	protein_coding	protein_coding	18	52	2	1.10643	1.635595	2.16476	0.0546472	0.00364507	0.189107	0.0306714
chr7	107160357	107160454	8455222	0	+	0.237113	[0,0.29]	chr7	645853	9	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	21	38	2	1.23542	1.635435	2.03545	0.048523	0.00339809	0.182362	0.0283451
chr1	24651408	24651476	101950	0	+	0.529412	(0.49,0.53]	chr1	11967	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SRRM1	ENSG00000133226.17	ENST00000468822.5:ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1:ENST00000494934.5:ENST00000495561.1:ENST00000485441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	48	2	1.56417	1.6350250000000002	1.70588	0.0289719	0.00843136	0.127437	0.0546021
chr2	24074075	24074134	2555723	0	-	0.338983	(0.33,0.36]	chr2	229439	1	CDS	CDS:EXON_MRNA	SF3B6	ENSG00000115128.7	ENST00000233468.5:ENST00000478050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	32	2	1.4550399999999999	1.6347749999999999	1.81451	0.0361848	0.0120734	0.145024	0.0695634
chr8	73291841	73291910	9888183	0	-	0.463768	(0.455,0.49]	chr8	747618	2	CDS	CDS:EXON_MRNA	RPL7	ENSG00000147604.14	ENST00000352983.7:ENST00000396467.5:ENST00000396466.5:ENST00000396465.5:ENST00000466821.1:ENST00000435330.5:ENST00000431653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	62	2	1.10954	1.63449	2.15944	0.0507737	0.00114312	0.181793	0.0130338
chr1	154243216	154243302	479858	0	+	0.5	(0.49,0.53]	chr1	49643	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000361546.6:ENST00000466173.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	36	2	1.56396	1.634485	1.70501	0.0388812	0.017267	0.158355	0.091184
chr10	17229348	17229422	10938767	0	+	0.77027	(0.59,1]	chr10	832981	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	VIM	ENSG00000026025.16	ENST00000544301.7:ENST00000478746.1:ENST00000497849.1:ENST00000224237.9:ENST00000487938.5:ENST00000485947.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	114	2	1.56103	1.63416	1.70729	0.0154192	0.0113893	0.0833655	0.0668123
chr12	98544441	98544537	13036826	0	+	0.385417	(0.36,0.39]	chr12	1014970	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	TMPO	ENSG00000120802.14	ENST00000556029.6:ENST00000343315.9:ENST00000393053.6:ENST00000556678.1:ENST00000548223.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	37	2	1.37008	1.6335549999999999	1.89703	0.0294011	0.0150863	0.128845	0.0821417
chr22	41866832	41866932	18383530	0	+	0.48	(0.455,0.49]	chr22	1564986	1	CDS_START	CDS_START:CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	30	2	1.4646	1.6327699999999998	1.80094	0.0410791	0.0265942	0.15538	0.120205
chr12	103947662	103947756	13056927	0	+	0.393617	(0.39,0.42]	chr12	1017364	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	HSP90B1	ENSG00000166598.16	ENST00000550595.2:ENST00000681861.1:ENST00000680899.1:ENST00000680391.1:ENST00000680653.1:ENST00000679779.1:ENST00000680281.1:ENST00000681949.1:ENST00000680989.1:ENST00000614327.2:ENST00000680663.1:ENST00000681172.1:ENST00000681941.1:ENST00000681910.1:ENST00000681704.1:ENST00000299767.10:ENST00000681174.1:ENST00000680370.1:ENST00000679538.1:ENST00000681698.1:ENST00000548462.5:ENST00000680316.1:ENST00000679861.1:ENST00000681245.1:ENST00000680478.1:ENST00000552051.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	83	236	2	1.48242	1.6326900000000002	1.78296	0.00424051	2.97525e-4	0.0331982	0.00434405
chr9	33046995	33047094	10631177	0	-	0.333333	(0.33,0.36]	chr9	803364	54	UTR3	UTR3:EXON_MRNA	SMU1	ENSG00000122692.9	ENST00000397149.4	protein_coding	protein_coding	protein_coding	protein_coding	9	21	2	1.57909	1.631875	1.68466	0.0532274	0.0351252	0.184818	0.145575
chr2	173367854	173367949	2218763	0	+	0.505263	(0.49,0.53]	chr2	202933	3	UTR3	UTR3:EXON_MRNA	CDCA7	ENSG00000144354.14	ENST00000347703.7:ENST00000306721.8:ENST00000496441.5:ENST00000410019.3:ENST00000467411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	48	2	1.60882	1.631525	1.65423	0.0288442	0.0106263	0.129096	0.0646667
chr17	32369374	32369454	16200642	0	+	0.55	(0.53,0.59]	chr17	1308193	2	CDS	CDS:EXON_MRNA	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	49	2	1.39443	1.6314899999999999	1.86855	0.0253273	0.0189167	0.114792	0.0934721
chr2	157258568	157258665	2152109	0	+	0.453608	(0.42,0.455]	chr2	198573	5	CDS	CDS:EXON_MRNA	GALNT5	ENSG00000136542.9	ENST00000259056.5	protein_coding	protein_coding	protein_coding	protein_coding	12	35	2	1.43196	1.6313	1.83064	0.0399324	0.0149305	0.162323	0.081162
chr3	129315064	129315162	4444052	0	-	0.602041	(0.59,1]	chr3	369338	4	UTR3	UTR3:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	10	57	2	1.29826	1.6311	1.96394	0.0486046	0.0453144	0.175495	0.174798
chr13	30460762	30460861	13949050	0	-	0.323232	(0.29,0.33]	chr13	1094852	42	UTR3	UTR3:EXON_MRNA	HMGB1	ENSG00000189403.15	ENST00000341423.10:ENST00000405805.5:ENST00000339872.8	protein_coding	protein_coding	protein_coding	protein_coding	15	31	2	1.36549	1.6310250000000002	1.89656	0.042227	0.00981789	0.159355	0.06149
chrM	4070	4166	19377180	0	+	0.447917	(0.42,0.455]	chrM	1649799	9	CDS	CDS:EXON_MRNA	MT-ND1	ENSG00000198888.2	ENST00000361390.2	protein_coding	protein_coding	protein_coding	protein_coding	81	225	2	1.41662	1.63069	1.84476	0.00363489	3.51746e-4	0.0305932	0.00493061
chr7	151081548	151081648	9129253	0	-	0.65	(0.59,1]	chr7	697676	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TMUB1	ENSG00000164897.14	ENST00000297533.9:ENST00000392818.7:ENST00000462940.1:ENST00000653405.1:ENST00000482202.5:ENST00000476627.5	protein_coding	protein_coding	protein_coding	protein_coding	11	65	2	1.29826	1.630455	1.96265	0.0486046	0.0238491	0.175495	0.112466
chr8	47819455	47819510	9815948	0	-	0.345455	(0.33,0.36]	chr8	742561	2	CDS	CDS:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	11	26	2	1.57515	1.629905	1.68466	0.0351252	0.0299562	0.145575	0.130016
chr1	24840937	24841036	103278	0	+	0.40404	(0.39,0.42]	chr1	12089	1	UTR3	UTR3:EXON_MRNA	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	33	2	1.60776	1.62934	1.65092	0.0291807	0.0216584	0.129773	0.103121
chr11	5485988	5486088	12242961	0	-	0.52	(0.49,0.53]	chr11	946189	167	INTRON	INTRON	HBG2:CTD-2643I7.5:HBE1:OR51B5	ENSG00000196565.15:ENSG00000239920.2:ENSG00000213931.7:ENSG00000167355.8	ENST00000380252.6:ENST00000380259.7:ENST00000292896.3:ENST00000380237.5:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	8	26	2	1.4742	1.6286399999999999	1.78308	0.0502928	0.0425234	0.180775	0.167547
chr6	67887560	67887658	7784136	0	-	0.336735	(0.33,0.36]	chr6	596229	7	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	68	149	2	1.5341	1.628095	1.72209	0.00255021	9.44205e-4	0.0228005	0.0113501
chr6	31827950	31828050	7116686	0	+	0.64	(0.59,1]	chr6	546208	1	CDS_START	CDS_START:CDS:EXON_MRNA	HSPA1B	ENSG00000204388.7	ENST00000375650.5	protein_coding	protein_coding	protein_coding	protein_coding	18	114	2	1.60101	1.62741	1.65381	0.0170739	0.0116627	0.0902515	0.0686664
chr3	25598063	25598144	4093013	0	-	0.358025	(0.33,0.36]	chr3	342037	2	UTR3	UTR3:EXON_MRNA	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000413971.5:ENST00000435706.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	21	47	2	1.57175	1.627095	1.68244	0.013343	0.00908248	0.0743286	0.0576026
chr3	177022420	177022519	4593451	0	-	0.353535	(0.33,0.36]	chr3	379622	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000474363.1:ENST00000673974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	25	60	2	1.46414	1.6270799999999999	1.79002	0.0231602	0.00243614	0.109623	0.0220182
chr12	6748363	6748455	13188352	0	-	0.532609	(0.53,0.59]	chr12	1032664	5	UTR3	UTR3:EXON_MRNA	MLF2	ENSG00000089693.11	ENST00000203630.10:ENST00000435120.5	protein_coding	protein_coding	protein_coding	protein_coding	16	59	2	1.46391	1.6265049999999999	1.7891	0.0264984	0.00693274	0.120071	0.0473262
chr5	115615608	115615708	6777002	0	-	0.27	[0,0.29]	chr5	519913	25	UTR3	UTR3:EXON_MRNA:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	20	2	1.43697	1.62601	1.81505	0.0498317	0.0409713	0.179293	0.163285
chr4	39780513	39780613	4802032	0	+	0.39	(0.36,0.39]	chr4	396197	22	UTR3	UTR3:EXON_MRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10	protein_coding	protein_coding	protein_coding	protein_coding	15	37	2	1.41662	1.6254	1.83418	0.0335181	0.00997757	0.138569	0.0622177
chr11	64318215	64318315	11980481	0	+	0.66	(0.59,1]	chr11	919230	1	CDS_START	CDS_START:CDS:EXON_MRNA	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	10	60	2	1.28809	1.62537	1.96265	0.0575363	0.0238491	0.197301	0.112466
chr8	144789903	144789962	10150925	0	-	0.59322	(0.59,1]	chr8	764114	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	RPL8	ENSG00000161016.18	ENST00000534781.1:ENST00000531975.5:ENST00000529163.5:ENST00000526668.5:ENST00000527914.5:ENST00000528957.6:ENST00000394920.6:ENST00000528296.5:ENST00000262584.7:ENST00000529920.5:ENST00000533397.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	264	2	1.16966	1.62531	2.08096	0.0247171	8.71207e-4	0.113257	0.0106963
chr6	106454878	106454929	7315186	0	+	0.431373	(0.42,0.455]	chr6	562220	2	EXON_SMALL	EXON_SMALL:INTRON	CRYBG1:Y_RNA	ENSG00000112297.18:ENSG00000200314.1	ENST00000633556.3:ENST00000363444.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	357	988	2	1.21787	1.625285	2.0327	0.00578548	1.33187e-5	0.0418548	3.8187e-4
chrX	71300863	71300957	18730905	0	+	0.425532	(0.42,0.455]	chrX	1598445	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	74	2	1.55373	1.625045	1.69636	0.00893859	0.00475211	0.0566951	0.0367421
chr22	19441074	19441169	18433493	0	-	0.4	(0.39,0.42]	chr22	1570855	3	UTR3	UTR3:EXON_MRNA:INTRON	C22orf39:HIRA	ENSG00000242259.9:ENSG00000100084.14	ENST00000509549.5:ENST00000452818.1:ENST00000399562.9:ENST00000399568.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	49	2	1.32171	1.62475	1.92779	0.0510794	0.00285701	0.191563	0.0245841
chr10	68983400	68983498	11093411	0	+	0.265306	[0,0.29]	chr10	843302	7	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	17	32	2	1.51014	1.624095	1.73805	0.0258595	0.0136916	0.117061	0.0760883
chr7	142667470	142667552	8579756	0	+	0.353659	(0.33,0.36]	chr7	655275	3	UTR3	UTR3:EXON_MRNA	MTRNR2L6	ENSG00000270672.1	ENST00000604952.1	protein_coding	protein_coding	protein_coding	protein_coding	464	1091	2	1.24581	1.623875	2.00194	0.0045849	1.53518e-5	0.0355295	3.92063e-4
chr12	53040223	53040322	12884646	0	+	0.424242	(0.42,0.455]	chr12	1001808	1	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14:ENST00000420463.7:ENST00000416762.7:ENST00000549592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	44	2	1.59752	1.621375	1.64523	0.0221403	0.0133664	0.105595	0.0743429
chr3	186784961	186785031	3958227	0	+	0.471429	(0.455,0.49]	chr3	333851	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	52	2	1.34517	1.62112	1.89707	0.0438219	0.0033244	0.171235	0.0277689
chr5	115615808	115615908	6777004	0	-	0.27	[0,0.29]	chr5	519913	27	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TMED7-TICAM2:TMED7	ENSG00000251201.8:ENSG00000134970.14	ENST00000282382.8:ENST00000333314.3:ENST00000514548.1:ENST00000456936.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	26	2	1.42715	1.6211	1.81505	0.0409713	0.0296466	0.163285	0.129905
chr11	27890134	27890234	12317020	0	-	0.4	(0.39,0.42]	chr11	952778	14	EXON_PSEUDO	EXON_PSEUDO	HSP90AA2P	ENSG00000224411.3	ENST00000530115.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	15	40	2	1.58577	1.6201249999999998	1.65448	0.0214904	0.0151263	0.102904	0.0823575
chr12	24811819	24811919	13255674	0	-	0.29	[0,0.29]	chr12	1038842	19	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	22	41	2	1.31155	1.6191849999999999	1.92682	0.0282049	0.00590259	0.124386	0.0427941
chr1	206733694	206733792	683412	0	+	0.479592	(0.455,0.49]	chr1	69024	11	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	22	64	2	1.53539	1.61916	1.70293	0.0133381	0.00584567	0.0743878	0.042264
chr8	97725568	97725668	9506395	0	+	0.37	(0.36,0.39]	chr8	722727	10	UTR3	UTR3:EXON_MRNA	MTDH	ENSG00000147649.10	ENST00000336273.8	protein_coding	protein_coding	protein_coding	protein_coding	22	49	2	1.16917	1.618745	2.06832	0.0322643	0.0122123	0.134296	0.0702898
chr3	47588208	47588306	4161763	0	-	0.693878	(0.59,1]	chr3	348303	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	95	2	1.40346	1.61798	1.8325	0.0346008	0.00890209	0.141505	0.0567495
chr19	804121	804208	17189499	0	+	0.586207	(0.53,0.59]	chr19	1411021	2	CDS	CDS:EXON_MRNA:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000592804.2:ENST00000349038.8:ENST00000590887.5:ENST00000586481.5:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000589575.5:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000592113.5:ENST00000585535.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	45	2	1.48483	1.6174400000000002	1.75005	0.0472509	0.0106076	0.172726	0.0640804
chr3	31625953	31626040	3392391	0	+	0.344828	(0.33,0.36]	chr3	295080	1	CDS	CDS:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	10	24	2	1.57515	1.6161400000000001	1.65713	0.0528205	0.0299562	0.195536	0.130016
chr17	81888031	81888130	16709765	0	-	0.636364	(0.59,1]	chr17	1377760	3	UTR3	UTR3:EXON_MRNA	ALYREF	ENSG00000183684.8	ENST00000505490.3	protein_coding	protein_coding	protein_coding	protein_coding	10	64	2	1.48516	1.61606	1.74696	0.047789	0.0204559	0.18008	0.0992616
chr19	11027880	11027950	17229307	0	+	0.457143	(0.455,0.49]	chr19	1419439	2	CDS	CDS:UTR3:EXON_MRNA	SMARCA4	ENSG00000127616.20	ENST00000644737.1:ENST00000642726.1:ENST00000646484.1:ENST00000643549.1:ENST00000643296.1:ENST00000647230.1:ENST00000642628.1:ENST00000646510.1:ENST00000429416.8:ENST00000344626.10:ENST00000646693.2:ENST00000645460.1:ENST00000541122.6:ENST00000589677.5:ENST00000444061.8:ENST00000590574.6:ENST00000591545.6:ENST00000643995.1:ENST00000644327.1:ENST00000644065.1:ENST00000644963.1:ENST00000643208.1:ENST00000645061.1:ENST00000642350.1:ENST00000644290.1:ENST00000647268.1:ENST00000643857.1:ENST00000644267.1:ENST00000646183.1:ENST00000646746.1:ENST00000643534.1:ENST00000646593.1:ENST00000645648.1:ENST00000592604.6:ENST00000591595.5:ENST00000646236.1:ENST00000585799.5:ENST00000642508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	24	2	1.43393	1.61499	1.79605	0.0573788	0.0427708	0.196772	0.168094
chr1	205713614	205713714	1461991	0	-	0.28	[0,0.29]	chr1	147460	9	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	13	25	2	1.34442	1.614925	1.88543	0.046303	0.0226603	0.170072	0.10742
chr1	47217857	47217955	985528	0	-	0.44898	(0.42,0.455]	chr1	104046	17	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	14	42	2	1.58977	1.61452	1.63927	0.0455517	0.011613	0.175554	0.0680824
chr9	112222167	112222266	10802904	0	-	0.242424	[0,0.29]	chr9	818409	46	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6	protein_coding	protein_coding	protein_coding	protein_coding	24	46	2	1.42841	1.61448	1.80055	0.0263712	0.00401841	0.120036	0.0321283
chr19	12953147	12953246	17238500	0	+	0.454545	(0.42,0.455]	chr19	1421119	2	UTR3	UTR3:EXON_MRNA	RAD23A	ENSG00000179262.10	ENST00000591499.5:ENST00000651137.1:ENST00000586534.6:ENST00000316856.7:ENST00000592268.5:ENST00000593114.5:ENST00000586375.1:ENST00000590881.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	24	2	1.58956	1.6144150000000002	1.63927	0.0485703	0.0455517	0.175554	0.175495
chr19	4724633	4724673	17433738	0	-	0.65	(0.59,1]	chr19	1455520	1	UTR5	UTR5:EXON_MRNA	DPP9	ENSG00000142002.18	ENST00000598041.5	protein_coding	protein_coding	protein_coding	protein_coding	40	250	2	1.16082	1.61429	2.06776	0.0336187	5.56511e-4	0.140923	0.00707182
chrX	47214929	47215028	18686929	0	+	0.646465	(0.59,1]	chrX	1593285	1	UTR3	UTR3:EXON_MRNA	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11:ENST00000377269.3	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	1.49936	1.6138	1.72824	0.0471232	0.0358913	0.179872	0.144634
chr5	80650867	80650965	6667604	0	-	0.377551	(0.36,0.39]	chr5	514741	9	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	790	1872	2	1.48721	1.613745	1.74028	7.50846e-4	1.25471e-4	0.00938268	0.00217707
chr20	35653739	35653838	17954996	0	-	0.363636	(0.36,0.39]	chr20	1521109	3	CDS	CDS:EXON_MRNA:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	25	2	1.36801	1.613375	1.85874	0.0471244	0.0415243	0.172305	0.164804
chr19	2248057	2248154	17195927	0	+	0.742268	(0.59,1]	chr19	1412819	4	CDS	CDS:EXON_MRNA	SF3A2	ENSG00000104897.10	ENST00000221494.10	protein_coding	protein_coding	protein_coding	protein_coding	14	90	2	1.41381	1.613365	1.81292	0.0475417	0.00739725	0.17993	0.0492519
chr1	228098512	228098612	744038	0	+	0.6	(0.59,1]	chr1	75099	6	UTR3	UTR3:EXON_MRNA	ARF1	ENSG00000143761.16	ENST00000540651.5:ENST00000272102.10:ENST00000541182.1	protein_coding	protein_coding	protein_coding	protein_coding	21	120	2	1.37001	1.6131799999999998	1.85635	0.0185917	0.0142857	0.0951125	0.0780535
chr22	41867193	41867280	18383534	0	+	0.494253	(0.49,0.53]	chr22	1564987	4	CDS	CDS:EXON_MRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	45	2	1.56396	1.612805	1.66165	0.0388812	0.010083	0.158355	0.0625006
chrX	117914294	117914345	19188183	0	-	0.470588	(0.455,0.49]	chrX	1631281	2	EXON_SMALL	EXON_SMALL:INTRON	KLHL13:Y_RNA	ENSG00000003096.14:ENSG00000200291.1	ENST00000371882.5:ENST00000541812.5:ENST00000545703.5:ENST00000540167.5:ENST00000262820.7:ENST00000371878.5:ENST00000371876.5:ENST00000469946.5:ENST00000363421.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	131	368	2	1.18408	1.6125349999999998	2.04099	0.0100668	3.30612e-5	0.0624201	8.09661e-4
chr9	112220782	112220881	10802890	0	-	0.272727	[0,0.29]	chr9	818409	32	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	37	78	2	1.39864	1.61246	1.82628	0.0243983	8.39292e-4	0.114706	0.00981548
chr18	59330695	59330794	17142340	0	-	0.444444	(0.42,0.455]	chr18	1407602	30	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000592562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	66	2	1.26755	1.612275	1.957	0.0396423	0.00152929	0.161272	0.0155135
chr17	67340646	67340744	16652468	0	-	0.316327	(0.29,0.33]	chr17	1369535	29	UTR3	UTR3:EXON_MRNA	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4	protein_coding	protein_coding	protein_coding	protein_coding	11	22	2	1.55778	1.6119249999999998	1.66607	0.0424383	0.03577	0.160073	0.147298
chrX	24078617	24078713	18616699	0	+	0.385417	(0.36,0.39]	chrX	1589843	20	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	14	36	2	1.54838	1.61123	1.67408	0.038399	0.0122872	0.15648	0.0706588
chr7	123542169	123542220	9045619	0	-	0.392157	(0.39,0.42]	chr7	690521	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NDUFA5	ENSG00000128609.16	ENST00000355749.7:ENST00000471770.5:ENST00000678090.1:ENST00000679163.1:ENST00000676614.1:ENST00000677251.1:ENST00000676730.1:ENST00000677306.1:ENST00000676516.1:ENST00000677391.1:ENST00000677264.1:ENST00000611607.4:ENST00000618945.4:ENST00000492549.6:ENST00000678032.1:ENST00000679052.1:ENST00000467117.6:ENST00000677134.1:ENST00000378795.9:ENST00000470123.2:ENST00000459880.1:ENST00000466896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	35	2	1.51702	1.610765	1.70451	0.0277255	0.0205608	0.122886	0.0993359
chr6	36924624	36924723	7135756	0	+	0.353535	(0.33,0.36]	chr6	549805	13	UTR3	UTR3:EXON_MRNA	C6orf89	ENSG00000198663.17	ENST00000480824.7	protein_coding	protein_coding	protein_coding	protein_coding	12	28	2	1.5354	1.61003	1.68466	0.0351252	0.0272526	0.145575	0.120857
chr2	161370106	161370177	2164977	0	+	0.464789	(0.455,0.49]	chr2	199374	1	CDS	CDS:EXON_MRNA	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	10	30	2	1.51376	1.60955	1.70534	0.0475178	0.0239221	0.17993	0.109927
chr17	4948294	4948394	16419524	0	-	0.67	(0.59,1]	chr17	1337739	1	CDS_START	CDS_START:CDS:EXON_MRNA	PFN1	ENSG00000108518.8	ENST00000225655.6:ENST00000572383.1	protein_coding	protein_coding	protein_coding	protein_coding	19	118	2	1.53843	1.60903	1.67963	0.0149658	0.012703	0.0815133	0.0725185
chr14	23079740	23079837	14529225	0	-	0.494845	(0.49,0.53]	chr14	1138540	3	CDS	CDS:EXON_MRNA	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	8	26	2	1.56467	1.608955	1.65324	0.051923	0.0407792	0.18423900000000001	0.163285
chr12	12110962	12111062	12736764	0	+	0.61	(0.59,1]	chr12	990191	114	INTRON	INTRON	BCL2L14	ENSG00000121380.12	ENST00000298566.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	15	97	2	1.36903	1.608705	1.84838	0.0450142	0.00669215	0.167113	0.0459821
chr19	10670979	10671079	17226079	0	+	0.48	(0.455,0.49]	chr19	1418839	1	CDS_START	CDS_START:CDS:EXON_MRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5:ENST00000587505.5:ENST00000589052.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587941.1:ENST00000587840.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	38	2	1.33854	1.608525	1.87851	0.0504473	0.0092042	0.181202	0.0583232
chr11	2949764	2949852	12233444	0	-	0.488636	(0.455,0.49]	chr11	944849	1	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000469805.5:ENST00000469089.5:ENST00000526115.5:ENST00000492594.6:ENST00000526023.5:ENST00000492685.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	13	38	2	1.48669	1.608395	1.7301	0.030677	0.0168678	0.130016	0.0889456
chr19	1257370	1257468	17192151	0	+	0.367347	(0.36,0.39]	chr19	1411881	2	UTR3	UTR3:EXON_MRNA	MIDN	ENSG00000167470.13	ENST00000300952.6:ENST00000682408.1:ENST00000591446.6	protein_coding	protein_coding	protein_coding	protein_coding	13	33	2	1.54838	1.60689	1.6654	0.038399	0.0161285	0.15648	0.0866586
chr15	90980883	90980958	15439294	0	-	0.493333	(0.49,0.53]	chr15	1221385	1	CDS	CDS:UTR3:EXON_MRNA	PRC1:AC068831.18	ENSG00000198901.14:ENSG00000284946.1	ENST00000394249.8:ENST00000361188.9:ENST00000643536.1:ENST00000442656.6:ENST00000647331.1:ENST00000556982.1:ENST00000553494.5:ENST00000557763.5:ENST00000417173.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	32	2	1.56396	1.6066	1.64924	0.0388812	0.0286659	0.158355	0.126175
chr2	61492566	61492657	2690501	0	-	0.362637	(0.36,0.39]	chr2	240369	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	53	2	1.32126	1.60653	1.8918	0.0471477	0.00225356	0.17993	0.020836
chr4	70983239	70983338	4878925	0	+	0.353535	(0.33,0.36]	chr4	401906	13	UTR3	UTR3:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	30	2	1.20453	1.60609	2.00765	0.0486142	0.0287001	0.175495	0.128757
chr14	81176743	81176842	14730340	0	-	0.292929	(0.29,0.33]	chr14	1153987	14	UTR3	UTR3:EXON_MRNA	GTF2A1	ENSG00000165417.12	ENST00000553612.6	protein_coding	protein_coding	protein_coding	protein_coding	14	29	2	1.38088	1.6054050000000002	1.82993	0.0529272	0.01179	0.195536	0.0690526
chr2	113957652	113957751	2007123	0	+	0.272727	[0,0.29]	chr2	190801	3	UTR3	UTR3:EXON_MRNA	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000478928.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	22	44	2	1.36289	1.60504	1.84719	0.0417087	0.00314635	0.165482	0.0265428
chr1	32680546	32680645	130421	0	+	0.40404	(0.39,0.42]	chr1	16122	1	UTR3	UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	44	2	1.58577	1.60412	1.62247	0.0214904	0.0117147	0.102904	0.0686664
chr1	241630135	241630234	1578014	0	-	0.343434	(0.33,0.36]	chr1	157611	14	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	27	68	2	1.29778	1.60351	1.90924	0.042925	9.12142e-4	0.16868	0.0103688
chr3	138826231	138826329	3768571	0	+	0.530612	(0.53,0.59]	chr3	322470	13	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P25	ENSG00000241429.1	ENST00000495704.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	33	119	2	1.34553	1.60143	1.85733	0.0170622	0.00111994	0.0896789	0.0121972
chr1	631940	632037	488	0	+	0.43299	(0.42,0.455]	chr1	106	10	EXON_PSEUDO	EXON_PSEUDO	MTCO1P12	ENSG00000237973.1	ENST00000414273.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	170	467	2	1.35318	1.6013600000000001	1.84954	0.00365205	9.72665e-5	0.0299451	0.00193011
chr18	14482574	14482674	17026633	0	-	0.39	(0.36,0.39]	chr18	1399646	28	INTRON	INTRON	CXADRP3	ENSG00000265766.3	ENST00000581457.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	257	592	2	1.19074	1.6008099999999998	2.01088	0.00719096	1.85933e-5	0.0482665	5.04972e-4
chr17	58089477	58089577	16287295	0	+	0.34	(0.33,0.36]	chr17	1320910	3	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	23	50	2	1.30661	1.60045	1.89429	0.0229773	0.00643718	0.106187	0.0452349
chr8	108241856	108241913	10002719	0	-	0.280702	[0,0.29]	chr8	754224	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677746.1:ENST00000676931.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	38	76	2	1.3652	1.600375	1.83555	0.0220087	9.5372e-4	0.105485	0.010724
chr1	244855903	244855982	1591295	0	-	0.481013	(0.455,0.49]	chr1	158396	1	CDS	CDS:UTR3:EXON_MRNA	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1:ENST00000638301.1:ENST00000640119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	63	2	1.14411	1.59974	2.05537	0.0500986	0.00142936	0.187939	0.0146869
chr5	171410660	171410756	6384431	0	+	0.375	(0.36,0.39]	chr5	495846	2	UTR3	UTR3:EXON_MRNA	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	102	2	1.39182	1.59962	1.80742	0.00981309	0.00118734	0.0614747	0.0127896
chr18	57601153	57601252	17137459	0	-	0.262626	[0,0.29]	chr18	1407137	6	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10	protein_coding	protein_coding	protein_coding	protein_coding	23	42	2	1.32672	1.598875	1.87103	0.035127	0.00431481	0.14558	0.0334844
chr1	225789913	225790005	737932	0	+	0.326087	(0.29,0.33]	chr1	74393	7	UTR3	UTR3:EXON_MRNA	SRP9	ENSG00000143742.14	ENST00000304786.12:ENST00000366839.8:ENST00000651761.1	protein_coding	protein_coding	protein_coding	protein_coding	53	103	2	1.28305	1.5986500000000001	1.91425	0.0101657	0.00108762	0.0627379	0.0125545
chr1	29119263	29119361	121642	0	+	0.408163	(0.39,0.42]	chr1	14751	26	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	46	2	1.59111	1.5984150000000001	1.60572	0.0242602	0.0109613	0.114087	0.0665375
chr16	18788085	18788105	15877018	0	-	0.4	(0.39,0.42]	chr16	1269278	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RPS15A:RP11-1035H13.3	ENSG00000134419.15:ENSG00000260342.2	ENST00000322989.8:ENST00000572008.5:ENST00000563390.5:ENST00000574723.5:ENST00000576008.5:ENST00000562935.5:ENST00000569365.6:ENST00000576436.5:ENST00000565420.5:ENST00000569083.1:ENST00000567078.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	48	121	2	1.29104	1.59823	1.90542	0.011839	6.24204e-4	0.0693057	0.00829437
chr16	2767374	2767472	15494949	0	+	0.642857	(0.59,1]	chr16	1227802	60	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2	protein_coding	protein_coding	protein_coding	protein_coding	10	62	2	1.45712	1.597205	1.73729	0.0409956	0.0303312	0.155091	0.129874
chr13	45337291	45337385	14005926	0	-	0.414894	(0.39,0.42]	chr13	1098085	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000528619.5:ENST00000529421.5:ENST00000484604.5:ENST00000490277.1:ENST00000533567.5:ENST00000530245.5:ENST00000379060.8:ENST00000379055.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	189	482	2	1.54464	1.5968900000000001	1.64914	8.94781e-4	4.67572e-4	0.0108679	0.00618258
chr16	1964525	1964625	15823841	0	-	0.75	(0.59,1]	chr16	1261874	1	CDS_START	CDS_START:CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS2	ENSG00000140988.16	ENST00000343262.9:ENST00000526522.5:ENST00000533161.5:ENST00000527871.5:ENST00000530225.5:ENST00000531065.5:ENST00000527109.5:ENST00000533872.5:ENST00000529806.5:ENST00000527302.1:ENST00000526908.1:ENST00000527826.1:ENST00000563194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	275	1659	2	1.56022	1.596865	1.63351	0.00202308	0.00159632	0.0191273	0.016909
chr1	23310255	23310354	894705	0	-	0.323232	(0.29,0.33]	chr1	92818	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNRNPR	ENSG00000125944.21	ENST00000641107.1:ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000476660.1:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	36	73	2	1.50637	1.5967099999999999	1.68705	0.00582742	0.00573928	0.0426551	0.0421521
chr12	49762993	49763090	12869272	0	+	0.309278	(0.29,0.33]	chr12	999645	2	UTR3	UTR3:EXON_MRNA	TMBIM6	ENSG00000139644.13	ENST00000267115.10:ENST00000552699.5:ENST00000549385.5:ENST00000423828.5:ENST00000395006.8:ENST00000547798.1:ENST00000549471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	78	2	1.2751	1.59601	1.91692	0.0237997	7.81542e-4	0.112329	0.00927662
chr6	67881299	67881392	7784072	0	-	0.505376	(0.49,0.53]	chr6	596219	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1	lncRNA	lncRNA	lncRNA	lncRNA	40	117	2	1.39667	1.594735	1.7928	0.00721771	0.00268202	0.0484423	0.0242082
chr1	65431875	65431932	251609	0	+	0.385965	(0.36,0.39]	chr1	28779	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	LEPROT:LEPR	ENSG00000213625.9:ENSG00000116678.20	ENST00000475108.5:ENST00000371060.7:ENST00000371059.7:ENST00000349533.11:ENST00000371065.9:ENST00000488747.5:ENST00000613538.1	protein_coding	protein_coding	protein_coding	protein_coding	11	27	2	1.54838	1.593315	1.63825	0.038399	0.0311278	0.15648	0.130473
chr10	117282667	117282767	11711098	0	-	0.37	(0.36,0.39]	chr10	893463	55	UTR3	UTR3:EXON_MRNA	PDZD8	ENSG00000165650.12	ENST00000334464.7	protein_coding	protein_coding	protein_coding	protein_coding	11	27	2	1.54838	1.593315	1.63825	0.038399	0.0311278	0.15648	0.130473
chr21	8389382	8389480	18041423	0	+	0.755102	(0.59,1]	chr21	1530861	5	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	337	2235	2	1.39498	1.593145	1.79131	0.00572719	5.65746e-4	0.0417368	0.0077844
chr21	8436845	8436944	18041912	0	+	0.545455	(0.53,0.59]	chr21	1530900	38	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	618	1992	2	1.17457	1.5930299999999997	2.0114899999999998	0.00710357	2.59024e-5	0.0480269	5.99541e-4
chr12	56713536	56713553	13352484	0	-	0.470588	(0.455,0.49]	chr12	1051840	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NACA	ENSG00000196531.14	ENST00000678066.1:ENST00000679092.1:ENST00000546862.6:ENST00000678416.1:ENST00000678047.1:ENST00000454682.6:ENST00000550952.6:ENST00000550920.6:ENST00000678376.1:ENST00000356769.7:ENST00000393891.8:ENST00000552540.5:ENST00000676873.1:ENST00000548563.5:ENST00000548386.6:ENST00000546392.6:ENST00000547914.5:ENST00000549259.5:ENST00000551775.5:ENST00000552055.5:ENST00000549855.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	58	185	2	1.12259	1.59295	2.06331	0.0300852	7.08223e-5	0.129773	0.00136527
chr11	65436580	65436680	11984709	0	+	0.49	(0.455,0.49]	chr11	920390	126	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	11	32	2	1.56466	1.59254	1.62042	0.0320389	0.0309562	0.133433	0.131262
chr1	27406802	27406901	908771	0	-	0.565657	(0.53,0.59]	chr1	95011	27	UTR3	UTR3:EXON_MRNA	WASF2	ENSG00000158195.11	ENST00000618852.5	protein_coding	protein_coding	protein_coding	protein_coding	16	53	2	1.31443	1.5914899999999998	1.86855	0.0274058	0.0189167	0.121512	0.0934721
chr2	38750103	38750194	2605207	0	-	0.43956	(0.42,0.455]	chr2	234699	2	CDS	CDS:UTR5:EXON_MRNA	SRSF7	ENSG00000115875.19	ENST00000446327.6:ENST00000313117.11:ENST00000425778.5:ENST00000425941.6:ENST00000409276.5:ENST00000431066.5:ENST00000443213.5:ENST00000415527.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	27	2	1.34146	1.5912350000000002	1.84101	0.053512	0.0352234	0.197317	0.142054
chr4	87337275	87337366	5518000	0	-	0.351648	(0.33,0.36]	chr4	441926	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-529H2.2:HSD17B11	ENSG00000255723.1:ENSG00000198189.11	ENST00000508163.1:ENST00000358290.9:ENST00000507518.5:ENST00000512344.5:ENST00000502576.5:ENST00000507286.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	21	2	1.52414	1.590635	1.65713	0.0528205	0.0461827	0.195536	0.16975
chr7	121127173	121127257	8495123	0	+	0.297619	(0.29,0.33]	chr7	648366	2	CDS	CDS:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10:ENST00000428526.5:ENST00000450913.6:ENST00000423795.5:ENST00000443817.1	protein_coding	protein_coding	protein_coding	protein_coding	26	56	2	1.56538	1.590355	1.61533	0.0237602	0.00539777	0.112145	0.0396326
chr12	108645706	108645806	13530480	0	-	0.59	(0.53,0.59]	chr12	1063929	7	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	14	51	2	1.34395	1.589595	1.83524	0.0477987	0.00732584	0.1801	0.0491463
chr22	21629009	21629098	18441869	0	-	0.820225	(0.59,1]	chr22	1572454	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	YDJC	ENSG00000161179.14	ENST00000415762.6:ENST00000468686.5:ENST00000292778.11:ENST00000464015.5:ENST00000473985.1:ENST00000482998.1:ENST00000398873.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	75	2	1.49936	1.589235	1.67911	0.0358913	0.0201164	0.144634	0.0976908
chr9	112222068	112222167	10802903	0	-	0.424242	(0.42,0.455]	chr9	818409	45	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	21	62	2	1.40714	1.588755	1.77037	0.0308776	0.00350718	0.131262	0.0288964
chr7	6483966	6484057	8664896	0	-	0.615385	(0.59,1]	chr7	662856	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:EXON_LNCRNA	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	106	2	1.47418	1.588605	1.70303	0.0242764	0.0152148	0.114156	0.0825984
chr9	83969154	83969251	10712866	0	-	0.43299	(0.42,0.455]	chr9	810477	12	UTR3	UTR3:EXON_MRNA:PRIMIRNA	HNRNPK:MIR7-1	ENSG00000165119.21:ENSG00000284179.1	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000493362.1:ENST00000384871.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	49	133	2	1.43833	1.58841	1.73849	0.00566466	0.00150685	0.0423159	0.015290400000000001
chr21	8445458	8445558	18041999	0	+	0.53	(0.49,0.53]	chr21	1530902	56	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	2166	6392	2	1.5597	1.5879500000000002	1.6162	4.94814e-4	2.99703e-4	0.00646028	0.00472028
chr18	57600754	57600854	17137455	0	-	0.43	(0.42,0.455]	chr18	1407137	2	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10	protein_coding	protein_coding	protein_coding	protein_coding	20	55	2	1.3905	1.587855	1.78521	0.0195653	0.0153287	0.0951892	0.0831994
chr11	102398573	102398671	12562704	0	-	0.397959	(0.39,0.42]	chr11	974345	24	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	37	94	2	1.39677	1.5875650000000001	1.77836	0.00918291	0.00247609	0.058081	0.0231239
chr6	17674904	17674968	7619485	0	-	0.453125	(0.42,0.455]	chr6	580610	1	CDS	CDS:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.58516	1.58739	1.58962	0.0389398	0.0352	0.158547	0.142054
chr6	38703054	38703145	7689906	0	-	0.615385	(0.59,1]	chr6	589604	1	UTR5	UTR5:EXON_MRNA	GLO1	ENSG00000124767.7	ENST00000373365.5	protein_coding	protein_coding	protein_coding	protein_coding	14	87	2	1.48251	1.58697	1.69143	0.0312041	0.0153347	0.130787	0.0829195
chr6	31815951	31816047	7116662	0	+	0.604167	(0.59,1]	chr6	546204	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	26	155	2	1.16127	1.5866500000000001	2.01203	0.0407372	0.00219205	0.154137	0.0209461
chrM	12811	12906	19377269	0	+	0.494737	(0.49,0.53]	chrM	1649828	6	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	94	277	2	1.44365	1.5856400000000002	1.72763	0.00282703	6.12066e-4	0.0244376	0.00818575
chr9	137242495	137242591	10515399	0	+	0.604167	(0.59,1]	chr9	797249	1	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	75	2	1.20588	1.5839150000000002	1.96195	0.0576122	0.0144738	0.197559	0.0790046
chr1	47217661	47217759	985526	0	-	0.418367	(0.39,0.42]	chr1	104046	15	UTR3	UTR3:EXON_MRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3	protein_coding	protein_coding	protein_coding	protein_coding	19	50	2	1.46261	1.5835599999999999	1.70451	0.0205608	0.0136973	0.0993359	0.0752082
chr22	22557385	22557477	18445146	0	-	0.586957	(0.53,0.59]	chr22	1572836	7	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRAME	ENSG00000185686.18	ENST00000492657.5:ENST00000398743.6:ENST00000405655.8:ENST00000543184.5:ENST00000398741.5:ENST00000402697.5:ENST00000439106.5:ENST00000420709.5:ENST00000476336.5:ENST00000406503.1:ENST00000442481.5:ENST00000403441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	59	2	1.25591	1.582665	1.90942	0.0313207	0.0105233	0.132315	0.0644466
chrX	78126028	78126127	18747152	0	+	0.313131	(0.29,0.33]	chrX	1599855	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	95	184	2	1.47119	1.5824099999999999	1.69363	0.00306408	6.83903e-4	0.0271948	0.00836671
chr5	151811001	151811100	6299836	0	+	0.414141	(0.39,0.42]	chr5	491960	56	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	46	2	1.44483	1.582265	1.7197	0.0357586	0.00624779	0.144114	0.0444617
chr2	101004157	101004190	1957008	0	+	0.606061	(0.59,1]	chr2	185902	1	CDS	CDS:EXON_MRNA	RPL31	ENSG00000071082.11	ENST00000409000.5:ENST00000409028.8:ENST00000264258.8:ENST00000409038.5:ENST00000409650.5:ENST00000409733.5:ENST00000409320.7:ENST00000419276.1:ENST00000409711.1:ENST00000456292.5:ENST00000441435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	148	2	1.53361	1.58225	1.63089	0.0191316	0.00825016	0.0942405	0.0534766
chr21	39342812	39342911	18257065	0	-	0.434343	(0.42,0.455]	chr21	1548152	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HMGN1	ENSG00000205581.11	ENST00000492280.5:ENST00000431390.5:ENST00000486741.5:ENST00000380749.10:ENST00000288344.14:ENST00000652622.1:ENST00000436324.5:ENST00000380748.5:ENST00000419378.5:ENST00000489072.5:ENST00000482192.5:ENST00000380747.5:ENST00000485550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	46	132	2	1.5251	1.580755	1.63641	0.0079098	0.00163028	0.0523592	0.0162082
chr12	54282224	54282300	12891442	0	+	0.5	(0.49,0.53]	chr12	1002922	2	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000547870.2:ENST00000551702.5:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000678919.1:ENST00000677220.1:ENST00000678077.1:ENST00000548688.5:ENST00000679273.1:ENST00000678448.1:ENST00000676842.1:ENST00000550994.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	45	129	2	1.21464	1.5807099999999998	1.94678	0.0165182	7.06377e-4	0.087611	0.00891014
chr6	67887658	67887757	7784137	0	-	0.545455	(0.53,0.59]	chr6	596229	8	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	54	195	2	1.03393	1.580695	2.12746	0.0366905	9.06555e-5	0.150285	0.00167584
chr17	82087684	82087772	16710780	0	-	0.613636	(0.59,1]	chr17	1378205	1	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	9	56	2	1.47272	1.5802749999999999	1.68783	0.0488838	0.035259	0.175974	0.146063
chr5	171410565	171410660	6384430	0	+	0.284211	[0,0.29]	chr5	495846	1	UTR3	UTR3:EXON_MRNA	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000296930.10:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1:ENST00000677682.1:ENST00000524204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	85	149	2	1.35875	1.57925	1.79975	0.00573611	5.24927e-4	0.0417435	0.00732516
chr2	177222272	177222371	2228566	0	+	0.333333	(0.33,0.36]	chr2	203394	31	UTR3	UTR3:EXON_MRNA	HNRNPA3	ENSG00000170144.21	ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	71	2	1.18701	1.5792199999999998	1.97143	0.0445711	7.14587e-4	0.172281	0.00857666
chr22	41064148	41064245	18378065	0	+	0.556701	(0.53,0.59]	chr22	1564055	2	EXON_PSEUDO	EXON_PSEUDO	RP11-12M9.3	ENSG00000237214.3	ENST00000418783.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	28	103	2	1.32053	1.5789149999999998	1.8373	0.0297702	0.00126046	0.129773	0.0133887
chrX	154360088	154360188	19278093	0	-	0.61	(0.59,1]	chrX	1638314	2	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	68	2	1.57629	1.57829	1.58029	0.0363893	0.0275445	0.14906	0.122112
chr19	46788414	46788504	17595602	0	-	0.666667	(0.59,1]	chr19	1481430	6	UTR5	UTR5:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6	protein_coding	protein_coding	protein_coding	protein_coding	11	68	2	1.41361	1.57826	1.74291	0.0468414	0.0212394	0.171905	0.102152
chr15	40036056	40036148	15230343	0	-	0.380435	(0.36,0.39]	chr15	1198267	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRP14	ENSG00000140319.11	ENST00000267884.11:ENST00000558527.5:ENST00000558720.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	68	2	1.39554	1.578225	1.76091	0.0129817	0.00469427	0.0729417	0.036346
chr1	29119752	29119850	121647	0	+	0.265306	[0,0.29]	chr1	14751	31	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	26	52	2	1.34904	1.5768499999999999	1.80466	0.0392446	0.00237879	0.159701	0.0216895
chr12	62336390	62336490	12913828	0	+	0.47	(0.455,0.49]	chr12	1006428	13	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	84	2	1.53123	1.57666	1.62209	0.0186762	0.00319133	0.0934721	0.0267605
chr11	10797623	10797719	12272535	0	-	0.322917	(0.29,0.33]	chr11	948968	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	77	2	1.43075	1.5766499999999999	1.72255	0.0118173	0.00226573	0.0686664	0.0209469
chr11	86068938	86069017	12526857	0	-	0.64557	(0.59,1]	chr11	972288	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000528398.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	18	111	2	1.19142	1.57613	1.96084	0.054727	0.00412458	0.189374	0.0325842
chr11	10800175	10800261	12272567	0	-	0.453488	(0.42,0.455]	chr11	948981	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G2	ENSG00000110321.19	ENST00000526148.6:ENST00000525681.6:ENST00000339995.11:ENST00000532383.5:ENST00000396525.7:ENST00000532120.1:ENST00000528839.1:ENST00000534272.1:ENST00000531180.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	58	2	1.42706	1.574905	1.72275	0.017719	0.00841255	0.0931434	0.054565
chr6	28154610	28154709	7105797	0	+	0.383838	(0.36,0.39]	chr6	543601	7	UTR3	UTR3:EXON_MRNA	ZKSCAN8	ENSG00000198315.11	ENST00000330236.7	protein_coding	protein_coding	protein_coding	protein_coding	21	50	2	1.385	1.57463	1.76426	0.0178361	0.0160778	0.0918323	0.0866159
chr17	76564669	76564766	16359196	0	+	0.257732	[0,0.29]	chr17	1328581	17	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	25	48	2	1.41665	1.57429	1.73193	0.0218934	0.011619	0.104942	0.0681151
chr15	66502611	66502650	15353012	0	-	0.564103	(0.53,0.59]	chr15	1212573	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL4	ENSG00000174444.15	ENST00000307961.11:ENST00000567229.5:ENST00000568588.5:ENST00000561775.5:ENST00000569696.5:ENST00000566039.5:ENST00000564439.5:ENST00000566622.5:ENST00000569438.2:ENST00000566624.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	42	139	2	1.18421	1.5739999999999998	1.96379	0.0204241	7.54815e-4	0.0991152	0.0094272
chr6	34589074	34589173	7674091	0	-	0.484848	(0.455,0.49]	chr6	588118	19	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.43393	1.57378	1.71363	0.0573788	0.0246293	0.196772	0.114941
chr17	53106268	53106358	16270804	0	+	0.433333	(0.42,0.455]	chr17	1319815	7	EXON_PSEUDO	EXON_PSEUDO	MTCO1P40	ENSG00000262902.1	ENST00000574371.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	30	85	2	1.55768	1.57376	1.58984	0.0123956	0.00411884	0.070731	0.0324758
chr7	5527364	5527460	8659471	0	-	0.510417	(0.49,0.53]	chr7	662109	11	UTR3	UTR3:EXON_MRNA	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	45	130	2	1.15875	1.573745	1.98874	0.0220512	4.77743e-4	0.105595	0.00628636
chr1	205714408	205714508	1461999	0	-	0.4	(0.39,0.42]	chr1	147460	17	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	42	107	2	1.41957	1.5708250000000001	1.72208	0.00894262	0.00180031	0.0568053	0.0174529
chr19	3061159	3061257	17427005	0	-	0.55102	(0.53,0.59]	chr19	1453952	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA	TLE5	ENSG00000104964.15	ENST00000221561.12:ENST00000327141.9:ENST00000586742.5:ENST00000592330.5:ENST00000586839.1:ENST00000585557.1:ENST00000585782.1:ENST00000586003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	50	2	1.35149	1.570005	1.78852	0.026424	0.0249781	0.117405	0.116495
chr17	1344953	1345050	16398375	0	-	0.329897	(0.29,0.33]	chr17	1334230	8	UTR3	UTR3:EXON_MRNA	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	63	2	1.19603	1.56985	1.94367	0.0284228	0.00162602	0.125179	0.0169972
chr18	59330101	59330200	17142334	0	-	0.383838	(0.36,0.39]	chr18	1407602	24	UTR3	UTR3:EXON_MRNA	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	30	76	2	1.4042	1.569645	1.73509	0.0238572	0.00202039	0.112496	0.0191024
chr16	30067254	30067354	15628401	0	+	0.6	(0.59,1]	chr16	1239779	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5:ENST00000562679.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	114	647	2	1.20636	1.5695800000000002	1.9328	0.0145736	5.41997e-4	0.0793852	0.00748684
chr11	118601467	118601551	12159742	0	+	0.369048	(0.36,0.39]	chr11	937277	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARCN1	ENSG00000095139.14	ENST00000264028.5:ENST00000359415.8:ENST00000614498.4:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	35	87	2	1.27906	1.56933	1.8596	0.0252673	9.5625e-4	0.117089	0.010724
chr11	119087982	119088078	12161953	0	+	0.583333	(0.53,0.59]	chr11	937695	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	HMBS	ENSG00000256269.10	ENST00000536185.5:ENST00000652429.1:ENST00000545621.5:ENST00000545901.5:ENST00000442944.7:ENST00000542729.5:ENST00000537841.5:ENST00000543821.5:ENST00000640813.1:ENST00000546302.6:ENST00000542822.5:ENST00000542044.5:ENST00000536813.6:ENST00000544387.5:ENST00000535793.5:ENST00000543090.5:ENST00000649868.1:ENST00000534956.2:ENST00000648026.1:ENST00000650101.1:ENST00000650307.1:ENST00000649823.1:ENST00000535253.5:ENST00000542345.5:ENST00000392841.1:ENST00000546226.5:ENST00000543543.5:ENST00000648488.1:ENST00000648374.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	36	2	1.49715	1.56891	1.64067	0.0455868	0.0285853	0.175638	0.125848
chr10	110936621	110936708	11692539	0	-	0.505747	(0.49,0.53]	chr10	891865	1	EXON_PSEUDO	EXON_PSEUDO	RPL13AP6	ENSG00000234118.1	ENST00000430133.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	25	78	2	1.32926	1.568175	1.80709	0.0298058	0.00212441	0.129773	0.0198396
chr6	30704115	30704214	7659038	0	-	0.555556	(0.53,0.59]	chr6	584223	6	CDS	CDS:EXON_MRNA	MDC1	ENSG00000137337.15	ENST00000376406.8	protein_coding	protein_coding	protein_coding	protein_coding	15	52	2	1.48314	1.56807	1.653	0.0274587	0.0178204	0.124024	0.0934844
chr5	69177531	69177631	6019375	0	+	0.45	(0.42,0.455]	chr5	471260	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	CCNB1	ENSG00000134057.15	ENST00000256442.10:ENST00000505500.5:ENST00000507798.1:ENST00000513102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	34	2	1.54634	1.5680049999999999	1.58967	0.0338074	0.026634	0.141431	0.118265
chr9	130885882	130885981	10494290	0	+	0.636364	(0.59,1]	chr9	792936	3	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	18	110	2	1.46742	1.56754	1.66766	0.0335275	0.00841682	0.140586	0.0543584
chrM	11448	11547	19377255	0	+	0.474747	(0.455,0.49]	chrM	1649826	7	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	239	645	2	1.46436	1.5672350000000002	1.67011	0.00131975	3.7272e-4	0.0143985	0.00518875
chr6	38676804	38676902	7689638	0	-	0.326531	(0.29,0.33]	chr6	589572	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLO1	ENSG00000124767.7	ENST00000373365.5:ENST00000470973.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	28	58	2	1.41756	1.56704	1.71652	0.0244667	0.00329492	0.114841	0.0275873
chr3	133642999	133643099	4460948	0	-	0.37	(0.36,0.39]	chr3	370720	4	SS5_PROX	SS5_PROX:INTRON	TOPBP1	ENSG00000163781.14	ENST00000260810.10:ENST00000642236.1	protein_coding	protein_coding	protein_coding	protein_coding	259	582	2	1.2050399999999999	1.5667849999999999	1.92853	0.00659148	3.83456e-5	0.0460001	9.19136e-4
chr2	135783084	135783182	2083396	0	+	0.408163	(0.39,0.42]	chr2	195479	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UBXN4	ENSG00000144224.17	ENST00000272638.14:ENST00000490163.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	44	2	1.45628	1.566345	1.67641	0.0206231	0.0175063	0.10002	0.0918323
chr6	31622689	31622789	7115743	0	+	0.59	(0.53,0.59]	chr6	545804	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000469577.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	50	2	1.34395	1.565575	1.7872	0.0477987	0.00904074	0.1801	0.0573336
chr12	24813516	24813615	13255691	0	-	0.343434	(0.33,0.36]	chr12	1038842	36	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	16	35	2	1.41334	1.565375	1.71741	0.0295783	0.0178699	0.129611	0.0918323
chr2	223877594	223877692	3198647	0	-	0.306122	(0.29,0.33]	chr2	281841	24	UTR3	UTR3:EXON_MRNA:INTRON	RP11-660K21.1:WDFY1	ENSG00000286239.1:ENSG00000085449.15	ENST00000650969.1:ENST00000462702.1:ENST00000233055.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	28	2	1.38088	1.565185	1.74949	0.0529272	0.0162875	0.195536	0.0866586
chr5	181188849	181188908	7008588	0	-	0.576271	(0.53,0.59]	chr5	537234	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC01962	ENSG00000248473.2	ENST00000658296.1:ENST00000655600.1	lncRNA	lncRNA	lncRNA	lncRNA	296	1003	2	1.51719	1.564375	1.61156	0.00111826	5.59314e-4	0.0121847	0.00771126
chr5	109335777	109335874	6754749	0	-	0.360825	(0.36,0.39]	chr5	518800	12	UTR3	UTR3:EXON_MRNA	PJA2	ENSG00000198961.10	ENST00000361557.4:ENST00000361189.7	protein_coding	protein_coding	protein_coding	protein_coding	14	32	2	1.18142	1.5641699999999998	1.94692	0.0570067	0.0192083	0.195733	0.0943643
chr9	130887276	130887376	10494304	0	+	0.59	(0.53,0.59]	chr9	792936	17	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	22	77	2	1.36421	1.56249	1.76077	0.0251725	0.00431712	0.117089	0.0335016
chr21	33554894	33554994	18101206	0	+	0.43	(0.42,0.455]	chr21	1534527	43	CDS	CDS:EXON_MRNA:INTRON	SON	ENSG00000159140.21	ENST00000356577.10:ENST00000381692.6:ENST00000455528.5:ENST00000300278.8:ENST00000381679.8:ENST00000436227.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	38	2	1.2487	1.562205	1.87571	0.0498631	0.0138685	0.179401	0.0760883
chr3	196049873	196049972	4663139	0	-	0.434343	(0.42,0.455]	chr3	385550	7	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	39	106	2	1.48556	1.56195	1.63834	0.0069156	0.00316113	0.0472037	0.0266553
chr10	128105058	128105157	11745074	0	-	0.484848	(0.455,0.49]	chr10	896083	26	CDS	CDS:EXON_MRNA	MKI67	ENSG00000148773.14	ENST00000368654.8:ENST00000368653.7	protein_coding	protein_coding	protein_coding	protein_coding	9	26	2	1.43393	1.561745	1.68956	0.0573788	0.0381365	0.196772	0.155455
chr9	7477142	7477240	10545921	0	-	0.510204	(0.49,0.53]	chr9	799719	2	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	18	50	2	1.27038	1.56155	1.85272	0.0275725	0.0211739	0.122235	0.101864
chr19	10689312	10689409	17226291	0	+	0.546392	(0.53,0.59]	chr19	1418922	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000590261.5:ENST00000590869.1:ENST00000591649.5:ENST00000586544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	84	2	1.35084	1.561355	1.77187	0.0396067	0.00229742	0.161137	0.0210664
chr22	20950722	20950820	18300190	0	+	0.408163	(0.39,0.42]	chr22	1553647	10	UTR3	UTR3:EXON_MRNA:INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	40	113	2	1.2917	1.56127	1.83084	0.026194	6.22795e-4	0.119235	0.00774789
chr19	54461747	54461802	17391317	0	+	0.327273	(0.29,0.33]	chr19	1447416	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000610347.1	protein_coding	protein_coding	protein_coding	protein_coding	15	29	2	1.45777	1.56104	1.66431	0.0351908	0.0225076	0.145827	0.10505
chr3	136149497	136149594	4469296	0	-	0.381443	(0.36,0.39]	chr3	371334	7	UTR3	UTR3:EXON_MRNA	MSL2	ENSG00000174579.4	ENST00000309993.3	protein_coding	protein_coding	protein_coding	protein_coding	16	38	2	1.55109	1.56085	1.57061	0.0228883	0.0202967	0.108345	0.0985067
chr16	29810131	29810231	15626817	0	+	0.69	(0.59,1]	chr16	1239344	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAZ:AC009133.24	ENSG00000103495.14:ENSG00000280607.1	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000561855.1:ENST00000616501.4:ENST00000568411.5:ENST00000563012.1:ENST00000568544.5:ENST00000568282.1:ENST00000565777.1:ENST00000562594.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	19	113	2	1.34397	1.5602	1.77643	0.0299274	0.00900078	0.130016	0.0571452
chr1	150308047	150308128	466558	0	+	0.518519	(0.49,0.53]	chr1	47115	1	CDS	CDS:EXON_MRNA	MRPS21	ENSG00000266472.6	ENST00000614145.5:ENST00000581066.2	protein_coding	protein_coding	protein_coding	protein_coding	12	37	2	1.41373	1.55937	1.70501	0.0487081	0.017267	0.183028	0.091184
chrM	15319	15413	19377289	0	+	0.489362	(0.455,0.49]	chrM	1649831	6	CDS	CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	41	111	2	1.53709	1.55901	1.58093	0.00643086	0.00310331	0.0450905	0.0274272
chr6	31643019	31643115	7661414	0	-	0.677083	(0.59,1]	chr6	584828	3	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.13	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.1:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000470875.5:ENST00000437771.5:ENST00000465348.5:ENST00000438149.5:ENST00000469182.1:ENST00000453833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	17	103	2	1.46742	1.557735	1.64805	0.0335275	0.0104434	0.140586	0.0643411
chr17	63592904	63593002	16317583	0	+	0.5	(0.49,0.53]	chr17	1323671	39	UTR3	UTR3:EXON_MRNA:INTRON	DCAF7	ENSG00000136485.15	ENST00000614556.5:ENST00000431926.6:ENST00000580091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	19	57	2	1.45886	1.5576050000000001	1.65635	0.0233592	0.0087286	0.10794	0.0558843
chr9	131146216	131146304	10495824	0	+	0.579545	(0.53,0.59]	chr9	793247	2	CDS	CDS:EXON_MRNA	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000651022.1:ENST00000451030.5:ENST00000525980.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	46	159	2	1.4849	1.557485	1.63007	0.00831756	0.00187217	0.0545091	0.0180129
chr4	98880735	98880832	5547680	0	-	0.391753	(0.39,0.42]	chr4	443076	16	UTR3	UTR3:EXON_MRNA	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	25	67	2	1.36341	1.55627	1.74913	0.029381	0.00294388	0.129773	0.0252189
chr11	86069017	86069097	12526858	0	-	0.6875	(0.59,1]	chr11	972288	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000528398.5:ENST00000531930.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	73	2	1.54039	1.55586	1.57133	0.031435	0.0290023	0.131481	0.129773
chr19	10109756	10109835	17224322	0	+	0.556962	(0.53,0.59]	chr19	1418404	1	EXON_SMALL	EXON_SMALL:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPAN-P2RY11:PPAN:SNORD105B	ENSG00000243207.6:ENSG00000130810.20:ENSG00000238531.1	ENST00000428358.5:ENST00000253107.12:ENST00000393796.4:ENST00000393793.5:ENST00000446223.5:ENST00000466025.1:ENST00000458770.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron	22	77	2	1.44478	1.555235	1.66569	0.0240969	0.00514726	0.110672	0.0393717
chr21	8401159	8401259	18041542	0	+	0.52	(0.49,0.53]	chr21	1530863	55	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1531	4411	2	1.5459	1.55349	1.56108	5.18437e-4	5.0311e-4	0.00723798	0.0065507
chr1	47377343	47377443	182638	0	+	0.49	(0.455,0.49]	chr1	23843	7	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10	protein_coding	protein_coding	protein_coding	protein_coding	25	72	2	1.2548	1.553305	1.85181	0.0367284	0.00192667	0.150429	0.0184139
chr8	23571474	23571497	9230712	0	+	0.434783	(0.42,0.455]	chr8	706558	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	43	2	1.22718	1.552875	1.87857	0.0476112	0.00949283	0.174023	0.0596168
chr12	885318	885413	12681423	0	+	0.442105	(0.42,0.455]	chr12	984118	8	CDS	CDS:EXON_MRNA	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000675631.1:ENST00000676347.1:ENST00000675236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	36	2	1.38324	1.5526200000000001	1.722	0.0433726	0.0179091	0.162318	0.0918323
chr15	78894143	78894230	15042624	0	+	0.494253	(0.49,0.53]	chr15	1183465	2	CDS	CDS:EXON_MRNA:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559158.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	36	2	1.20122	1.55236	1.9035	0.051740800000000003	0.0295204	0.18423900000000001	0.129773
chr15	59768847	59768947	14962129	0	+	0.37	(0.36,0.39]	chr15	1175886	6	EXON_PSEUDO	EXON_PSEUDO	RPS3AP6	ENSG00000234797.5	ENST00000484430.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	20	46	2	1.26258	1.5517400000000001	1.8409	0.0407979	0.00581231	0.163285	0.0420454
chr16	29810565	29810653	15626822	0	+	0.636364	(0.59,1]	chr16	1239347	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAZ:AC009133.24	ENSG00000103495.14:ENSG00000280607.1	ENST00000545521.5:ENST00000322945.11:ENST00000562337.5:ENST00000566906.6:ENST00000563402.1:ENST00000219782.10:ENST00000568411.5:ENST00000568544.5:ENST00000568282.1:ENST00000565777.1:ENST00000562594.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	10	60	2	1.41361	1.55072	1.68783	0.0468414	0.035259	0.171905	0.146063
chr6	31816814	31816910	7116671	0	+	0.666667	(0.59,1]	chr6	546204	11	CDS	CDS:EXON_MRNA	HSPA1A	ENSG00000204389.10	ENST00000608703.1:ENST00000375651.7	protein_coding	protein_coding	protein_coding	protein_coding	22	129	2	1.30339	1.55031	1.79723	0.029302	0.00687321	0.128478	0.0469236
chr5	171392913	171392982	6384242	0	+	0.347826	(0.33,0.36]	chr5	495810	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	59	124	2	1.32979	1.5502	1.77061	0.00995743	8.59583e-4	0.0621728	0.0100299
chr11	62855366	62855464	12411596	0	-	0.459184	(0.455,0.49]	chr11	961827	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000545308.5:ENST00000540904.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	77	197	2	1.30654	1.54986	1.79318	0.00636123	7.48625e-4	0.0447551	0.00895549
chr15	41299139	41299239	14885412	0	+	0.57	(0.53,0.59]	chr15	1169280	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	OIP5-AS1:RP11-16O9.3	ENSG00000247556.6:ENSG00000285920.2	ENST00000500949.6:ENST00000668616.1:ENST00000649527.1:ENST00000501665.2:ENST00000661438.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	9	32	2	1.48483	1.5493000000000001	1.61377	0.0472509	0.0436338	0.172726	0.170594
chr12	110434988	110435071	13537435	0	-	0.349398	(0.33,0.36]	chr12	1064865	3	UTR3	UTR3:EXON_MRNA:INTRON	RP11-478C19.2:ARPC3	ENSG00000258210.1:ENSG00000111229.16	ENST00000550231.1:ENST00000228825.12:ENST00000467622.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	14	31	2	1.41334	1.549	1.68466	0.0351252	0.0295783	0.145575	0.129611
chr14	98973313	98973392	14481389	0	+	0.607595	(0.59,1]	chr14	1131304	1	EXON_PSEUDO	EXON_PSEUDO	AL162151.3	ENSG00000234648.1	ENST00000448875.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	27	162	2	1.41248	1.548155	1.68383	0.0194245	0.00602329	0.0973337	0.0435089
chr21	8399259	8399359	18041523	0	+	0.47	(0.455,0.49]	chr21	1530863	36	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2927	7840	2	1.27703	1.5478800000000001	1.81873	0.00316317	5.21015e-5	0.0266711	0.00116354
chr11	118751396	118751495	12625441	0	-	0.393939	(0.39,0.42]	chr11	979521	38	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4:ENST00000529162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	38	97	2	1.48684	1.5474	1.60796	0.00923479	0.00320535	0.0585136	0.0268626
chr1	17408603	17408700	874016	0	-	0.536082	(0.53,0.59]	chr1	89600	20	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	52	2	1.3959	1.54724	1.69858	0.0338272	0.0131369	0.139832	0.073328
chr2	197501155	197501238	2292610	0	+	0.421687	(0.42,0.455]	chr2	207876	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HSPE1:HSPE1-MOB4	ENSG00000115541.11:ENSG00000270757.1	ENST00000409729.1:ENST00000473395.1:ENST00000233893.10:ENST00000409468.1:ENST00000604458.1:ENST00000465573.1:ENST00000463841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	58	2	1.46104	1.54602	1.631	0.0216096	0.0081988	0.103758	0.0533659
chr3	156542708	156542807	4538659	0	-	0.343434	(0.33,0.36]	chr3	376076	33	UTR3	UTR3:EXON_MRNA	SSR3	ENSG00000114850.7	ENST00000265044.7	protein_coding	protein_coding	protein_coding	protein_coding	15	32	2	1.26555	1.5447449999999998	1.82394	0.0494504	0.0353902	0.18557	0.14271
chr20	31665748	31665848	17939743	0	-	0.54	(0.53,0.59]	chr20	1519093	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	49	2	1.48274	1.544295	1.60585	0.0371726	0.0152572	0.151929	0.0828234
chr10	84143994	84144050	11164532	0	+	0.517857	(0.49,0.53]	chr10	848133	1	CDS	CDS:EXON_MRNA	GHITM	ENSG00000165678.21	ENST00000372134.6	protein_coding	protein_coding	protein_coding	protein_coding	19	56	2	1.43245	1.544125	1.6558	0.0194954	0.0129897	0.0976652	0.0725705
chr1	47377044	47377143	182635	0	+	0.353535	(0.33,0.36]	chr1	23843	4	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	27	62	2	1.38335	1.54298	1.70261	0.031567	0.00306443	0.133342	0.026073
chr6	30724777	30724872	7112226	0	+	0.4	(0.39,0.42]	chr6	545067	5	UTR3	UTR3:EXON_MRNA	TUBB	ENSG00000196230.14	ENST00000681435.1:ENST00000327892.13:ENST00000330914.7:ENST00000680530.1:ENST00000396389.5:ENST00000681421.1:ENST00000396384.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	40	99	2	1.39634	1.5424799999999999	1.68862	0.00828283	0.00359907	0.0535542	0.0302966
chr8	100703191	100703275	9975933	0	-	0.309524	(0.29,0.33]	chr8	752645	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PABPC1:MIR7705	ENSG00000070756.17:ENSG00000284570.1	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000614758.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5:ENST00000523636.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	159	335	2	1.24541	1.541775	1.83814	0.0086899	1.06706e-4	0.0558165	0.00190873
chr19	10680345	10680443	17226183	0	+	0.469388	(0.455,0.49]	chr19	1418873	1	CDS	CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000587505.5:ENST00000250241.12:ENST00000590261.5:ENST00000588657.5:ENST00000592763.5:ENST00000587840.5:ENST00000589416.5:ENST00000585835.1:ENST00000589485.5:ENST00000589173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	30	2	1.3594	1.5412249999999998	1.72305	0.0494786	0.0324537	0.185659	0.134899
chr7	56106363	56106413	8827462	0	-	0.74	(0.59,1]	chr7	673704	1	CDS_START	CDS_START:CDS:EXON_MRNA	CHCHD2	ENSG00000106153.13	ENST00000395422.4:ENST00000473095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	60	2	1.41381	1.540625	1.66744	0.0475417	0.0369183	0.17993	0.145208
chrM	13382	13477	19377275	0	+	0.421053	(0.42,0.455]	chrM	1649828	12	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	59	151	2	1.05061	1.540225	2.02984	0.0287984	2.30618e-4	0.128916	0.00353213
chr12	62336190	62336290	12913826	0	+	0.37	(0.36,0.39]	chr12	1006428	11	UTR3	UTR3:EXON_MRNA:INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000312635.10:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	46	2	1.18619	1.539335	1.89248	0.0531869	0.00453752	0.19617	0.0346858
chr2	152655421	152655519	2944033	0	-	0.336735	(0.33,0.36]	chr2	261535	40	UTR3	UTR3:EXON_MRNA	PRPF40A	ENSG00000196504.19	ENST00000410080.8	protein_coding	protein_coding	protein_coding	protein_coding	30	61	2	1.46182	1.5389149999999998	1.61601	0.0112826	0.00800507	0.0666371	0.0522981
chr9	130885981	130886081	10494291	0	+	0.6	(0.59,1]	chr9	792936	4	UTR3	UTR3:EXON_MRNA	ABL1	ENSG00000097007.19	ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	21	121	2	1.32588	1.538755	1.75163	0.0269796	0.00994505	0.119681	0.0621728
chr6	31536499	31536591	7661142	0	-	0.402174	(0.39,0.42]	chr6	584701	1	CDS	CDS:UTR3:EXON_MRNA	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	23	57	2	1.205	1.53725	1.8695	0.0425446	0.00289514	0.160464	0.0257874
chr15	45608511	45608611	14904327	0	+	0.38	(0.36,0.39]	chr15	1172437	21	UTR3	UTR3:EXON_MRNA:INTRON	RP11-96O20.4:BLOC1S6	ENSG00000260170.1:ENSG00000104164.12	ENST00000564080.1:ENST00000220531.9:ENST00000564310.2:ENST00000565323.6:ENST00000568816.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	36	2	1.40597	1.537165	1.66836	0.0474647	0.0224662	0.17993	0.10505
chr20	35654925	35655024	17955008	0	-	0.464646	(0.455,0.49]	chr20	1521109	15	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	CPNE1:RP1-309K20.6:RBM12	ENSG00000214078.13:ENSG00000272897.5:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000541176.2:ENST00000441563.5:ENST00000454607.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	53	2	1.49358	1.536375	1.57917	0.0259027	0.0104626	0.118706	0.0644466
chr1	154584610	154584707	1303563	0	-	0.391753	(0.39,0.42]	chr1	131361	31	UTR3	UTR3:EXON_MRNA	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000681429.1:ENST00000492630.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	28	2	1.46372	1.53574	1.60776	0.0529342	0.0291807	0.184259	0.129773
chr19	55401335	55401435	17632430	0	-	0.56	(0.53,0.59]	chr19	1489480	17	UTR3	UTR3:EXON_MRNA	UBE2S	ENSG00000108106.14	ENST00000264552.14	protein_coding	protein_coding	protein_coding	protein_coding	20	70	2	1.2114	1.53553	1.85966	0.0490353	0.003157	0.184228	0.0266268
chr22	21761051	21761150	18442361	0	-	0.262626	[0,0.29]	chr22	1572508	15	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	34	60	2	1.49651	1.5352350000000001	1.57396	0.00939583	0.00857048	0.0590947	0.0552512
chr21	8217592	8217691	18041194	0	+	0.454545	(0.42,0.455]	chr21	1530814	50	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2874	7428	2	1.51837	1.534295	1.55022	5.35888e-4	5.1062e-4	0.00744072	0.00663981
chr5	131159348	131159446	6826786	0	-	0.357143	(0.33,0.36]	chr5	522061	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	HINT1	ENSG00000169567.13	ENST00000675100.1:ENST00000675372.1:ENST00000304043.10:ENST00000511475.6:ENST00000675135.1:ENST00000508495.5:ENST00000508488.2:ENST00000676117.1:ENST00000520028.2:ENST00000506908.2:ENST00000675491.1:ENST00000513345.6:ENST00000513012.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	55	2	1.4983900000000001	1.5341300000000002	1.56987	0.0208003	0.00885323	0.100356	0.0564472
chrX	65741542	65741639	18716381	0	+	0.597938	(0.59,1]	chrX	1596885	18	UTR3	UTR3:EXON_MRNA	MSN	ENSG00000147065.17	ENST00000360270.7	protein_coding	protein_coding	protein_coding	protein_coding	47	279	2	1.3883	1.533715	1.67913	0.0162185	0.00252872	0.0863877	0.0227138
chr7	12375154	12375227	8683425	0	-	0.493151	(0.49,0.53]	chr7	664030	3	CDS	CDS:EXON_MRNA:INTRON	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	33	2	1.24927	1.53293	1.81659	0.0504068	0.0376859	0.189057	0.147713
chr19	54201547	54201609	17390397	0	+	0.645161	(0.59,1]	chr19	1447206	2	CDS	CDS:EXON_MRNA	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1:ENST00000460761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	162	2	1.21258	1.532245	1.85191	0.0295727	0.00459286	0.129596	0.0355859
chr1	35192949	35193049	936854	0	-	0.71	(0.59,1]	chr1	98519	1	CDS_START	CDS_START:CDS:EXON_MRNA	SFPQ	ENSG00000116560.11	ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding	16	99	2	1.28809	1.531755	1.77542	0.0575363	0.00753346	0.197301	0.0501589
chr1	47219327	47219425	985543	0	-	0.530612	(0.53,0.59]	chr1	104046	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TAL1	ENSG00000162367.11	ENST00000371884.6:ENST00000294339.3:ENST00000459729.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	44	2	1.33826	1.53165	1.72504	0.0412763	0.0213174	0.156056	0.102501
chr15	20808111	20808210	15155780	0	-	0.383838	(0.36,0.39]	chr15	1192084	28	INTRON	INTRON	RP11-403B2.10	ENSG00000274499.1	ENST00000621235.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	277	600	2	0.952963	1.5315815	2.1102	0.0243099	7.82774e-6	0.111593	2.45497e-4
chr1	29150102	29150192	914094	0	-	0.522222	(0.49,0.53]	chr1	95615	1	CDS	CDS:EXON_MRNA:INTRON	SRSF4	ENSG00000116350.17	ENST00000373795.7:ENST00000634348.1:ENST00000466448.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	36	2	1.49869	1.53143	1.56417	0.0370308	0.0289719	0.151611	0.127437
chr5	151804733	151804828	6299772	0	+	0.252632	[0,0.29]	chr5	491958	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000678657.1:ENST00000676715.1:ENST00000676899.1:ENST00000676734.1:ENST00000676878.1:ENST00000678295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	26	2	1.5208	1.5306899999999999	1.54058	0.0356882	0.0315911	0.143842	0.133433
chr2	233288763	233288851	2436460	0	+	0.579545	(0.53,0.59]	chr2	219904	2	EXON_SMALL	EXON_SMALL:INTRON	ATG16L1:SCARNA6	ENSG00000085978.22:ENSG00000251791.1	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5:ENST00000464645.5:ENST00000515982.1	scaRNA	scaRNA	scaRNA:protein_coding	scaRNA:protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	24	81	2	1.32004	1.530395	1.74075	0.024349	0.00476739	0.11177	0.0368489
chr2	61496942	61497007	2690548	0	-	0.446154	(0.42,0.455]	chr2	240381	2	CDS	CDS:UTR3:EXON_MRNA	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1:ENST00000475744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	44	2	1.2018	1.530335	1.85887	0.04989	0.00931874	0.187163	0.0588091
chr7	116506357	116506456	8475392	0	+	0.252525	[0,0.29]	chr7	647296	3	UTR3	UTR3:EXON_MRNA	CAV2	ENSG00000105971.15	ENST00000222693.5:ENST00000343213.2	protein_coding	protein_coding	protein_coding	protein_coding	14	25	2	1.42203	1.5296349999999999	1.63724	0.0514084	0.0255145	0.192759	0.115596
chr12	120198723	120198770	13579752	0	-	0.468085	(0.455,0.49]	chr12	1068809	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPLP0	ENSG00000089157.16	ENST00000392514.9:ENST00000551150.5:ENST00000546989.5:ENST00000313104.9:ENST00000228306.8:ENST00000552461.5:ENST00000549098.5:ENST00000551258.5:ENST00000546990.5:ENST00000547211.5:ENST00000547475.5:ENST00000547173.5:ENST00000550856.5:ENST00000548568.5:ENST00000546564.5:ENST00000547191.5:ENST00000550296.5:ENST00000552902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	31	2	1.51376	1.52928	1.5448	0.0475178	0.0314044	0.17993	0.131369
chr1	182391706	182391806	1401302	0	-	0.65	(0.59,1]	chr1	141715	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000311223.9:ENST00000339526.8:ENST00000463851.6:ENST00000484996.5:ENST00000489818.5:ENST00000480604.5:ENST00000462444.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	103	2	1.32847	1.529085	1.7297	0.0298627	0.016326	0.129773	0.0867237
chr14	50087032	50087083	14276555	0	+	0.392157	(0.39,0.42]	chr14	1116068	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000251792.1	ENST00000515983.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	185	435	2	0.972287	1.5285835	2.08488	0.0246785	1.57957e-5	0.11309	4.42027e-4
chr11	65430100	65430199	11984644	0	+	0.464646	(0.455,0.49]	chr11	920390	61	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	24	64	2	1.43552	1.528515	1.62151	0.014397	0.0101477	0.0786099	0.0627153
chr16	30723681	30723779	15631062	0	+	0.561224	(0.53,0.59]	chr16	1240525	2	CDS	CDS:EXON_MRNA	SRCAP:RP11-2C24.9	ENSG00000080603.17:ENSG00000282034.1	ENST00000262518.9:ENST00000380361.7:ENST00000395059.6:ENST00000483083.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	80	2	1.21669	1.52777	1.83885	0.0335541	0.00350863	0.138716	0.0297282
chr12	56596667	56596764	13351648	0	-	0.247423	[0,0.29]	chr12	1051592	12	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	17	31	2	1.49955	1.527585	1.55562	0.0332276	0.0225137	0.139614	0.10505
chr1	22092809	22092908	93092	0	+	0.363636	(0.36,0.39]	chr1	10799	14	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	29	68	2	1.28564	1.52639	1.76714	0.0286118	0.00270455	0.128629	0.0236638
chr19	897249	897342	17417063	0	-	0.623656	(0.59,1]	chr19	1451986	9	UTR3	UTR3:EXON_MRNA	R3HDM4	ENSG00000198858.10	ENST00000589428.5:ENST00000361574.10:ENST00000587975.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	96	2	1.20817	1.52538	1.84259	0.047602	0.011062	0.173991	0.0653511
chr5	178210713	178210803	6411591	0	+	0.4	(0.39,0.42]	chr5	498729	2	UTR3	UTR3:EXON_MRNA	HNRNPAB	ENSG00000197451.12	ENST00000358344.8:ENST00000506339.5:ENST00000355836.9:ENST00000514633.5:ENST00000515193.5:ENST00000506259.5:ENST00000504898.5	protein_coding	protein_coding	protein_coding	protein_coding	23	54	2	1.2381	1.5252	1.8123	0.0324233	0.00649195	0.136339	0.0453575
chrM	10759	10859	19377248	0	+	0.34	(0.33,0.36]	chrM	1649825	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	MT-ND4L:MT-ND4	ENSG00000212907.2:ENSG00000198886.2	ENST00000361335.1:ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	940	1851	2	1.49282	1.5247950000000001	1.55677	7.67236e-4	4.38314e-4	0.00916171	0.0062681
chr8	100703107	100703191	9975932	0	-	0.166667	[0,0.29]	chr8	752645	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:PRIMIRNA:INTRON	PABPC1:MIR7705	ENSG00000070756.17:ENSG00000284570.1	ENST00000518293.5:ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000614758.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000678290.1:ENST00000318607.10:ENST00000520868.5:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000677285.1:ENST00000522387.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript:primary_miRNA	86	166	2	1.12989	1.524615	1.91934	0.0248063	1.33119e-4	0.115756	0.00228906
chr1	93361235	93361335	356113	0	+	0.26	[0,0.29]	chr1	35144	7	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	20	35	2	1.19338	1.5237850000000002	1.85419	0.0439833	0.0136504	0.163596	0.0760525
chr6	67888251	67888350	7784143	0	-	0.484848	(0.455,0.49]	chr6	596229	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	176	456	2	1.23591	1.523205	1.8105	0.00637449	1.62669e-4	0.0449937	0.00290162
chr11	61802211	61802310	12405923	0	-	0.515152	(0.49,0.53]	chr11	960580	27	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12:ENST00000536991.5:ENST00000433932.5:ENST00000460649.5	protein_coding	protein_coding	protein_coding	protein_coding	31	89	2	1.38591	1.522835	1.65976	0.0134038	0.00467975	0.0747342	0.0357221
chr18	8918344	8918442	16750742	0	+	0.510204	(0.49,0.53]	chr18	1381318	17	EXON_LNCRNA	EXON_LNCRNA	RP11-772F18.1	ENSG00000287719.1	ENST00000667345.1	lncRNA	lncRNA	lncRNA	lncRNA	18	47	2	1.19117	1.5226350000000002	1.8541	0.0379453	0.0205565	0.154794	0.0996997
chr5	14796827	14796926	6463509	0	-	0.30303	(0.29,0.33]	chr5	503013	88	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	35	2	1.31574	1.52244	1.72914	0.0496396	0.0103556	0.186234	0.0638939
chr6	67882779	67882878	7784088	0	-	0.474747	(0.455,0.49]	chr6	596223	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	120	318	2	1.50975	1.5223399999999998	1.53493	0.00157102	0.00152724	0.0162663	0.015735
chr11	57817191	57817289	11953248	0	+	0.510204	(0.49,0.53]	chr11	914890	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TMX2-CTNND1:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	16	47	2	1.47513	1.5195150000000002	1.5639	0.0265702	0.0185114	0.12016400000000001	0.0948661
chr19	973058	973157	17190414	0	+	0.474747	(0.455,0.49]	chr19	1411266	11	UTR3	UTR3:EXON_MRNA	ARID3A	ENSG00000116017.11	ENST00000263620.8	protein_coding	protein_coding	protein_coding	protein_coding	14	38	2	1.34517	1.51906	1.69295	0.0438219	0.018341	0.171235	0.0945306
chr22	39018681	39018780	18368450	0	+	0.555556	(0.53,0.59]	chr22	1562849	4	UTR3	UTR3:EXON_MRNA:INTRON	APOBEC3C:CTA-150C2.22	ENSG00000244509.4:ENSG00000284554.2	ENST00000361441.5:ENST00000428892.1:ENST00000381568.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	87	2	1.50883	1.5188199999999998	1.52881	0.0108707	0.00992282	0.0644212	0.06165
chr19	46609153	46609248	17357582	0	+	0.642105	(0.59,1]	chr19	1440686	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	CALM3	ENSG00000160014.17	ENST00000391918.6:ENST00000597743.5:ENST00000477244.5:ENST00000291295.14:ENST00000598871.5:ENST00000595072.2:ENST00000602169.2:ENST00000594523.5:ENST00000597868.5:ENST00000599839.5:ENST00000596362.1:ENST00000482455.5:ENST00000486500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	127	2	1.31601	1.51839	1.72077	0.0229929	0.0137395	0.106255	0.0760883
chr9	131197615	131197715	10496363	0	+	0.62	(0.59,1]	chr9	793351	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000470765.5:ENST00000483497.6:ENST00000465486.6:ENST00000531600.1:ENST00000525384.1:ENST00000529286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	117	2	1.16127	1.51722	1.87317	0.0407372	0.00983401	0.154137	0.0615818
chr1	45616625	45616703	175173	0	+	0.435897	(0.42,0.455]	chr1	22769	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000537798.5:ENST00000350030.8:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5:ENST00000534450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	48	2	1.31144	1.5170949999999999	1.72275	0.0403077	0.00841255	0.153343	0.054565
chr7	116918066	116918165	8478168	0	+	0.292929	(0.29,0.33]	chr7	647538	3	UTR3	UTR3:EXON_MRNA	CAPZA2	ENSG00000198898.14	ENST00000361183.8:ENST00000426421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	37	2	1.41877	1.51705	1.61533	0.0237602	0.0225146	0.112145	0.10505
chr12	42454719	42454770	12840260	0	+	0.45098	(0.42,0.455]	chr12	997451	1	EXON_SMALL	EXON_SMALL:INTRON	PPHLN1:Y_RNA	ENSG00000134283.18:ENSG00000207142.1	ENST00000317560.13:ENST00000384413.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	142	367	2	1.34966	1.51687	1.68408	0.00473874	3.56615e-4	0.0361423	0.00540624
chr1	32680436	32680525	130419	0	+	0.247191	[0,0.29]	chr1	16120	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	49	83	2	1.24142	1.5167950000000001	1.79217	0.0170544	0.00167277	0.0901539	0.0174262
chr14	69771193	69771277	14375483	0	+	0.535714	(0.53,0.59]	chr14	1123313	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000556587.5:ENST00000555547.5:ENST00000556330.5:ENST00000556647.1:ENST00000554929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	80	2	1.16824	1.515885	1.86353	0.0512898	0.00213008	0.182933	0.0206685
chr12	24816011	24816110	13255716	0	-	0.50505	(0.49,0.53]	chr12	1038842	61	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	18	54	2	1.46766	1.515625	1.56359	0.0523669	0.00850546	0.194793	0.0549021
chr1	207768113	207768210	689951	0	+	0.402062	(0.39,0.42]	chr1	70087	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1:ENST00000636114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	30	72	2	1.25857	1.514975	1.77138	0.0207397	0.00483063	0.100574	0.0372389
chr17	39202352	39202448	16219467	0	+	0.614583	(0.59,1]	chr17	1310961	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPL19	ENSG00000108298.12	ENST00000678147.1:ENST00000225430.9:ENST00000678609.1:ENST00000679038.1:ENST00000579374.5:ENST00000678012.1:ENST00000577741.2:ENST00000579260.5:ENST00000582193.5:ENST00000678791.1:ENST00000678573.1:ENST00000585199.2:ENST00000678189.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	219	2	1.16685	1.5149249999999999	1.863	0.0298101	0.002373	0.130016	0.0224036
chr6	67883477	67883576	7784095	0	-	0.373737	(0.36,0.39]	chr6	596223	14	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	140	308	2	1.37456	1.5146549999999999	1.65475	0.00322293	5.9911e-4	0.0270026	0.00810741
chr1	47280627	47280724	985992	0	-	0.453608	(0.42,0.455]	chr1	104121	5	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STIL	ENSG00000123473.17	ENST00000360380.7:ENST00000371877.8:ENST00000337817.10:ENST00000682940.1:ENST00000683977.1:ENST00000682977.1:ENST00000396221.6:ENST00000684618.1:ENST00000447475.7:ENST00000418131.1:ENST00000436811.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	21	57	2	1.39816	1.51458	1.631	0.0276205	0.0081988	0.124704	0.0533659
chrM	13001	13096	19377271	0	+	0.557895	(0.53,0.59]	chrM	1649828	8	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	47	156	2	1.37037	1.5127950000000001	1.65522	0.0100114	0.00207533	0.0621807	0.0203474
chr20	56367871	56367970	17834381	0	+	0.343434	(0.33,0.36]	chr20	1507875	17	UTR3	UTR3:EXON_MRNA	FAM210B	ENSG00000124098.10	ENST00000371384.4	protein_coding	protein_coding	protein_coding	protein_coding	23	47	2	1.21281	1.512765	1.81272	0.0361612	0.00734254	0.145024	0.0490627
chr3	23917196	23917295	3358531	0	+	0.606061	(0.59,1]	chr3	294123	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL15	ENSG00000174748.22	ENST00000422218.5:ENST00000611050.4:ENST00000434031.6:ENST00000307839.10:ENST00000413699.7:ENST00000645079.1:ENST00000456530.7:ENST00000412097.5:ENST00000644185.1:ENST00000465786.1:ENST00000436146.2:ENST00000490223.1:ENST00000415719.5:ENST00000644684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	77	2	1.37159	1.5127000000000002	1.65381	0.0538397	0.0170739	0.198494	0.0902515
chr7	128770545	128770643	8521862	0	+	0.397959	(0.39,0.42]	chr7	650198	15	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	46	123	2	1.08444	1.511085	1.93773	0.0400425	3.27884e-4	0.162764	0.00466985
chr1	1785971	1786070	829670	0	-	0.373737	(0.36,0.39]	chr1	82929	8	UTR3	UTR3:EXON_MRNA	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9	protein_coding	protein_coding	protein_coding	protein_coding	31	71	2	1.4797	1.51056	1.54142	0.0117546	0.00800871	0.0686664	0.05232
chr11	47468220	47468320	12386790	0	-	0.51	(0.49,0.53]	chr11	956932	24	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7	protein_coding	protein_coding	protein_coding	protein_coding	14	40	2	1.36785	1.510545	1.65324	0.0407792	0.0286176	0.163285	0.125985
chr22	21644175	21644237	18303286	0	+	0.66129	(0.59,1]	chr22	1554237	1	UTR3	UTR3:EXON_MRNA	SDF2L1	ENSG00000128228.5	ENST00000248958.5	protein_coding	protein_coding	protein_coding	protein_coding	32	191	2	1.26056	1.510335	1.76011	0.0352225	0.00264605	0.145955	0.0231864
chr1	633340	633438	501	0	+	0.397959	(0.39,0.42]	chr1	107	7	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	51	123	2	1.35143	1.509325	1.66722	0.00737058	0.00327135	0.0492428	0.0282669
chr9	137242591	137242687	10515400	0	+	0.635417	(0.59,1]	chr9	797249	2	CDS	CDS:EXON_MRNA	TUBB4B	ENSG00000188229.6	ENST00000340384.5:ENST00000604929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	111	2	1.50151	1.50923	1.51695	0.02469	0.0162723	0.113136	0.0866589
chrX	48777017	48777071	19063389	0	-	0.388889	(0.36,0.39]	chrX	1620492	2	EXON_SMALL	EXON_SMALL	RNU6-29P	ENSG00000207367.1	ENST00000384637.1	snRNA	snRNA	snRNA	snRNA	142	309	2	1.32315	1.50875	1.69435	0.00450004	4.15342e-4	0.0344204	0.00608105
chr17	41691125	41691222	16226847	0	+	0.536082	(0.53,0.59]	chr17	1312506	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	55	2	1.4107	1.50873	1.60676	0.046906	0.0105388	0.179138	0.0644466
chr17	59620042	59620131	16294807	0	+	0.696629	(0.59,1]	chr17	1321598	5	UTR5	UTR5:EXON_MRNA	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	70	2	1.48251	1.50698	1.53145	0.0416919	0.0312041	0.165444	0.130787
chr1	31938177	31938272	921501	0	-	0.768421	(0.59,1]	chr1	96989	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000468531.1:ENST00000526960.1:ENST00000529477.5:ENST00000533408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	70	2	1.39646	1.506405	1.61635	0.0420727	0.0315401	0.166851	0.131907
chr8	47773303	47773399	9815455	0	-	0.3125	(0.29,0.33]	chr8	742453	3	UTR3	UTR3:EXON_MRNA	PRKDC	ENSG00000253729.8	ENST00000314191.7	protein_coding	protein_coding	protein_coding	protein_coding	13	23	2	1.3453	1.505685	1.66607	0.0512371	0.0424383	0.192148	0.160073
chr1	35184075	35184170	936753	0	-	0.252632	[0,0.29]	chr1	98476	13	UTR3	UTR3:EXON_MRNA:INTRON	SFPQ	ENSG00000116560.11	ENST00000470472.5:ENST00000460428.5:ENST00000357214.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	53	2	1.47243	1.5053299999999998	1.53823	0.0143978	0.00935106	0.078511	0.0588361
chr5	180575487	180575586	6416548	0	+	0.262626	[0,0.29]	chr5	499475	14	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	16	29	2	1.42203	1.5042	1.58637	0.0514084	0.0192924	0.192759	0.0967467
chr1	32334217	32334311	922172	0	-	0.468085	(0.455,0.49]	chr1	97099	5	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	34	82	2	1.0241	1.5041250000000002	1.98415	0.0447671	0.00164518	0.173016	0.0163443
chr14	69768797	69768896	14375450	0	+	0.494949	(0.49,0.53]	chr14	1123297	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRSF5	ENSG00000100650.16	ENST00000553521.5:ENST00000554465.5:ENST00000394366.6:ENST00000553369.5:ENST00000553548.5:ENST00000557154.6:ENST00000553635.5:ENST00000556184.5:ENST00000557460.5:ENST00000556587.5:ENST00000555547.5:ENST00000556436.1:ENST00000554021.1:ENST00000555349.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	52	2	1.49557	1.50393	1.51229	0.020628	0.0189268	0.0996585	0.0958835
chrX	154359483	154359564	19278086	0	-	0.62963	(0.59,1]	chrX	1638310	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	59	2	1.48516	1.5036800000000001	1.5222	0.047789	0.0422214	0.18008	0.159345
chr1	244854350	244854449	1591277	0	-	0.333333	(0.33,0.36]	chr1	158388	42	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	55	110	2	1.40781	1.50354	1.59927	0.00721834	0.00263168	0.0484456	0.0239118
chr1	154156567	154156665	1302304	0	-	0.520408	(0.49,0.53]	chr1	131065	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	45	127	2	1.48385	1.5019149999999999	1.51998	0.00554455	0.00485197	0.0417049	0.0366328
chrX	124047353	124047429	18852020	0	+	0.328947	(0.29,0.33]	chrX	1606190	1	CDS	CDS:EXON_MRNA:INTRON	STAG2	ENSG00000101972.19	ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000469481.1:ENST00000371160.5:ENST00000371145.8:ENST00000371157.7:ENST00000371144.7:ENST00000466748.5:ENST00000471107.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	29	2	1.44593	1.501855	1.55778	0.03577	0.0319221	0.147298	0.133433
chr21	8444860	8444960	18041993	0	+	0.45	(0.42,0.455]	chr21	1530902	50	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	2728	6916	2	1.47709	1.501695	1.5263	7.28392e-4	6.07044e-4	0.00915522	0.00758412
chr16	74622759	74622857	16032596	0	-	0.438776	(0.42,0.455]	chr16	1287407	15	UTR3	UTR3:EXON_MRNA	RFWD3	ENSG00000168411.14	ENST00000361070.9	protein_coding	protein_coding	protein_coding	protein_coding	13	35	2	1.34146	1.50164	1.66182	0.053512	0.0204671	0.197317	0.0993047
chr10	72275753	72275847	11111182	0	+	0.5	(0.49,0.53]	chr10	845359	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	58	2	1.47513	1.499885	1.52464	0.0265702	0.01154	0.12016400000000001	0.0676608
chr19	5691410	5691510	17210641	0	+	0.64	(0.59,1]	chr19	1415424	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL36	ENSG00000130255.13	ENST00000579649.5:ENST00000577222.5:ENST00000347512.8:ENST00000579446.1:ENST00000394580.2	protein_coding	protein_coding	protein_coding	protein_coding	50	275	2	1.38714	1.49974	1.61234	0.00928064	0.00705129	0.0586577	0.0478044
chr6	67886367	67886467	7784124	0	-	0.48	(0.455,0.49]	chr6	596226	21	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	71	185	2	1.47392	1.49853	1.52314	0.00332416	0.00272104	0.0277689	0.0245317
chr4	67871	67960	4673639	0	+	0.449438	(0.42,0.455]	chr4	387020	1	UTR3	UTR3:EXON_MRNA:INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000509152.3:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	33	85	2	1.17045	1.49733	1.82421	0.0314966	0.0017767	0.131736	0.0181549
chrM	9306	9403	19377232	0	+	0.453608	(0.42,0.455]	chrM	1649818	1	CDS	CDS:EXON_MRNA	MT-CO3	ENSG00000198938.2	ENST00000362079.2	protein_coding	protein_coding	protein_coding	protein_coding	271	668	2	1.26742	1.4973100000000001	1.7272	0.00419544	2.60338e-4	0.0328613	0.00390688
chr1	229322090	229322188	1541530	0	-	0.459184	(0.455,0.49]	chr1	154303	12	UTR3	UTR3:EXON_MRNA	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1	protein_coding	protein_coding	protein_coding	protein_coding	13	35	2	1.375	1.496075	1.61715	0.0377607	0.0342264	0.147993	0.142155
chr15	78894057	78894143	15042623	0	+	0.395349	(0.39,0.42]	chr15	1183465	1	CDS	CDS:EXON_MRNA:INTRON	MORF4L1	ENSG00000185787.15	ENST00000379535.8:ENST00000331268.9:ENST00000426013.7:ENST00000558746.5:ENST00000559345.5:ENST00000561171.5:ENST00000558502.5:ENST00000559158.5:ENST00000560422.5:ENST00000560710.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	16	40	2	1.49151	1.4959799999999999	1.50045	0.0335886	0.0209416	0.1408	0.101311
chr1	205715897	205715996	1462014	0	-	0.373737	(0.36,0.39]	chr1	147460	32	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	32	73	2	1.39934	1.4949050000000002	1.59047	0.0178335	0.00495578	0.0918323	0.0368301
chr7	26191831	26191930	8734042	0	-	0.232323	[0,0.29]	chr7	666648	23	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	72	125	2	1.16297	1.493795	1.82462	0.0222107	4.54511e-4	0.105595	0.00608573
chr3	180161885	180161977	4608701	0	-	0.586957	(0.53,0.59]	chr3	380391	1	EXON_SMALL	EXON_SMALL	RNA5SP149	ENSG00000201822.1	ENST00000364952.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	753	2407	2	1.10558	1.493325	1.88107	0.0104509	6.16081e-5	0.0643861	0.00133408
chr1	109313345	109313445	1219463	0	-	0.38	(0.36,0.39]	chr1	118935	39	UTR3	UTR3:EXON_MRNA	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8	protein_coding	protein_coding	protein_coding	protein_coding	18	40	2	1.43535	1.49322	1.55109	0.0273336	0.0202967	0.123521	0.0985067
chr7	136129979	136130030	9086058	0	-	0.431373	(0.42,0.455]	chr7	693667	1	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000206705.1	ENST00000383978.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	26	70	2	1.32876	1.4917099999999999	1.65466	0.0283205	0.0048139	0.127654	0.0365653
chr5	91370904	91371003	6695318	0	-	0.343434	(0.33,0.36]	chr5	516141	24	UTR3	UTR3:EXON_MRNA	ARRDC3	ENSG00000113369.9	ENST00000265138.4:ENST00000511391.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	35	2	1.47889	1.491545	1.5042	0.0293763	0.0249769	0.129773	0.114013
chr10	46005933	46006027	11470923	0	-	0.276596	[0,0.29]	chr10	874825	10	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	64	104	2	1.06238	1.4913750000000001	1.92037	0.0243454	0.00127394	0.111755	0.0139534
chr5	134927149	134927247	6846865	0	-	0.44898	(0.42,0.455]	chr5	523926	6	EXON_PSEUDO	EXON_PSEUDO	MTND4P12	ENSG00000247627.2	ENST00000498999.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	60	154	2	1.18608	1.4893800000000001	1.79268	0.0168254	7.5579e-4	0.0887421	0.00903514
chr12	108646304	108646404	13530486	0	-	0.53	(0.49,0.53]	chr12	1063929	13	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	10	29	2	1.41373	1.4891999999999999	1.56467	0.051923	0.0487081	0.18423900000000001	0.183028
chr12	53041318	53041418	12884657	0	+	0.41	(0.39,0.42]	chr12	1001808	12	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	22	53	2	1.35444	1.488455	1.62247	0.0241426	0.0117147	0.110835	0.0686664
chr4	70982057	70982155	4878913	0	+	0.367347	(0.36,0.39]	chr4	401906	1	UTR3	UTR3:EXON_MRNA:INTRON	MOB1B	ENSG00000173542.9	ENST00000309395.7:ENST00000396051.2:ENST00000511449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	46	2	1.4042	1.488035	1.57187	0.0238572	0.0154357	0.112496	0.0835025
chr19	3982334	3982424	17430243	0	-	0.611111	(0.59,1]	chr19	1454724	2	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7:ENST00000598436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	65	352	2	1.3093	1.4873949999999998	1.66549	0.0115027	0.00389945	0.0674458	0.0322851
chr17	82090469	82090564	16710815	0	-	0.663158	(0.59,1]	chr17	1378229	2	CDS	CDS:EXON_MRNA	FASN	ENSG00000169710.9	ENST00000306749.4:ENST00000634990.1	protein_coding	protein_coding	protein_coding	protein_coding	15	83	2	1.31258	1.487295	1.66201	0.0368424	0.0277662	0.145024	0.125327
chrX	154399237	154399337	18917595	0	+	0.53	(0.49,0.53]	chrX	1611811	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	40	2	1.26856	1.4867849999999998	1.70501	0.0541847	0.017267	0.199653	0.091184
chr12	98599634	98599717	13036957	0	+	0.39759	(0.39,0.42]	chr12	1015014	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	SLC25A3:SNORA53	ENSG00000075415.15:ENSG00000212443.1	ENST00000401722.7:ENST00000188376.9:ENST00000551917.5:ENST00000546766.5:ENST00000228318.8:ENST00000552981.6:ENST00000551123.5:ENST00000549338.5:ENST00000548847.1:ENST00000391141.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding:retained_intron:nonsense_mediated_decay	13	31	2	1.32171	1.485995	1.65028	0.0510794	0.0292034	0.191563	0.128158
chr3	31637422	31637519	3392511	0	+	0.340206	(0.33,0.36]	chr3	295101	15	UTR3	UTR3:EXON_MRNA	STT3B	ENSG00000163527.10	ENST00000295770.4	protein_coding	protein_coding	protein_coding	protein_coding	15	31	2	1.43576	1.4855800000000001	1.5354	0.040323	0.0272526	0.163285	0.120857
chr7	72947416	72947514	8330251	0	+	0.489796	(0.455,0.49]	chr7	634065	13	UTR3	UTR3:EXON_MRNA:INTRON	POM121	ENSG00000196313.12	ENST00000395270.5:ENST00000446813.4:ENST00000627934.2:ENST00000358357.7:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	23	59	2	1.3	1.4855749999999999	1.67115	0.0256289	0.00977902	0.1175	0.0611628
chr3	49411909	49412000	4174605	0	-	0.758242	(0.59,1]	chr3	350945	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000677684.1:ENST00000431929.2:ENST00000265538.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	86	2	1.38314	1.485425	1.58771	0.0378267	0.0217013	0.154319	0.103258
chr7	26200577	26200667	8734148	0	-	0.644444	(0.59,1]	chr7	666688	1	UTR5	UTR5:EXON_MRNA	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	26	145	2	1.38297	1.4853399999999999	1.58771	0.0217013	0.015798800000000002	0.103258	0.0851135
chr19	54206426	54206526	17390448	0	+	0.61	(0.59,1]	chr19	1447213	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	126	2	1.36402	1.4853	1.60658	0.031708	0.00970503	0.133924	0.0610096
chr9	112221475	112221574	10802897	0	-	0.30303	(0.29,0.33]	chr9	818409	39	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	19	37	2	1.41253	1.485155	1.55778	0.03577	0.0204202	0.147298	0.0990979
chr19	14087944	14088038	17478307	0	-	0.659574	(0.59,1]	chr19	1464154	2	UTR3	UTR3:EXON_MRNA	SAMD1	ENSG00000141858.12	ENST00000533683.7	protein_coding	protein_coding	protein_coding	protein_coding	14	78	2	1.3062	1.484105	1.66201	0.0419489	0.0277662	0.158455	0.125327
chr15	44717882	44717974	14899983	0	+	0.358696	(0.33,0.36]	chr15	1171710	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000561424.5:ENST00000648006.3:ENST00000349264.10:ENST00000559220.1:ENST00000561139.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	66	133	2	1.37602	1.48376	1.5915	0.00562292	0.00290693	0.0410491	0.0258848
chr3	53233214	53233274	4189074	0	-	0.583333	(0.53,0.59]	chr3	353805	2	CDS	CDS:UTR3:EXON_MRNA	TKT	ENSG00000163931.16	ENST00000462138.6:ENST00000423525.6:ENST00000460343.5:ENST00000423516.5:ENST00000450814.6:ENST00000296289.10:ENST00000469678.1:ENST00000472528.5:ENST00000494523.2:ENST00000466765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	37	2	1.4703	1.483725	1.49715	0.0455868	0.0386603	0.175638	0.149227
chr1	156742586	156742682	1316754	0	-	0.46875	(0.455,0.49]	chr1	133965	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HDGF	ENSG00000143321.19	ENST00000357325.10:ENST00000368209.9:ENST00000537739.5:ENST00000465180.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	52	2	1.34517	1.48339	1.62161	0.0438219	0.0086127	0.171235	0.0555142
chr12	93400474	93400574	13019158	0	+	0.38	(0.36,0.39]	chr12	1013446	12	UTR3	UTR3:EXON_MRNA	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5	protein_coding	protein_coding	protein_coding	protein_coding	32	75	2	1.36002	1.48315	1.60628	0.0255214	0.00381005	0.117089	0.030852
chr17	48542819	48542901	16577775	0	-	0.353659	(0.33,0.36]	chr17	1361781	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HOXB2	ENSG00000173917.11	ENST00000504772.3:ENST00000330070.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	26	2	1.43576	1.47995	1.52414	0.0461827	0.040323	0.16975	0.163285
chr19	9564560	9564659	17454599	0	-	0.363636	(0.36,0.39]	chr19	1459747	44	UTR3	UTR3:EXON_MRNA	ZNF121	ENSG00000197961.12	ENST00000320451.7:ENST00000586602.5	protein_coding	protein_coding	protein_coding	protein_coding	13	29	2	1.39831	1.479655	1.561	0.0520783	0.0292256	0.18423900000000001	0.129773
chr19	18280440	18280540	17499044	0	-	0.67	(0.59,1]	chr19	1468047	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JUND	ENSG00000130522.6	ENST00000252818.5:ENST00000600972.1	protein_coding	protein_coding	protein_coding	protein_coding	10	58	2	1.47272	1.4789400000000001	1.48516	0.0488838	0.047789	0.18008	0.175974
chr9	7477338	7477436	10545923	0	-	0.428571	(0.42,0.455]	chr9	799719	4	EXON_PSEUDO	EXON_PSEUDO	RPL4P5	ENSG00000230207.1	ENST00000413888.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	51	138	2	1.32124	1.4781	1.63496	0.0154167	0.00157456	0.0833583	0.015761
chr12	24812717	24812817	13255683	0	-	0.36	(0.33,0.36]	chr12	1038842	28	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12	protein_coding	protein_coding	protein_coding	protein_coding	21	44	2	1.47609	1.47749	1.47889	0.0293763	0.0151443	0.129773	0.0822216
chr1	110023152	110023251	401937	0	+	0.373737	(0.36,0.39]	chr1	39336	16	UTR3	UTR3:EXON_MRNA	AHCYL1	ENSG00000168710.18	ENST00000369799.10:ENST00000393614.8	protein_coding	protein_coding	protein_coding	protein_coding	18	40	2	1.29693	1.477425	1.65792	0.0342181	0.0204392	0.141175	0.0988514
chr3	101686481	101686557	4331712	0	-	0.631579	(0.59,1]	chr3	361349	1	CDS	CDS:EXON_MRNA	RPL24	ENSG00000114391.13	ENST00000394077.8:ENST00000464595.1:ENST00000495401.5:ENST00000469605.1:ENST00000470961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	31	175	2	1.33763	1.475465	1.6133	0.0233654	0.00657906	0.110544	0.045932
chr12	24815911	24816011	13255715	0	-	0.4	(0.39,0.42]	chr12	1038842	60	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	19	46	2	1.31836	1.4742199999999999	1.63008	0.0358647	0.0229928	0.147298	0.106255
chr11	585465	585564	11757778	0	+	0.50505	(0.49,0.53]	chr11	898148	30	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	57	2	1.17745	1.474015	1.77058	0.0347802	0.0133397	0.144346	0.0743125
chr1	225984801	225984901	1531413	0	-	0.3	(0.29,0.33]	chr1	153219	22	UTR3	UTR3:EXON_MRNA	SDE2	ENSG00000143751.10	ENST00000272091.8	protein_coding	protein_coding	protein_coding	protein_coding	26	47	2	1.41253	1.4734150000000001	1.5343	0.0204202	0.0134025	0.0990979	0.0747331
chr1	29117013	29117111	121619	0	+	0.346939	(0.33,0.36]	chr1	14751	3	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000373798.5:ENST00000343067.9:ENST00000349460.9:ENST00000490308.2:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	87	2	1.21298	1.47299	1.733	0.0295932	0.00157499	0.129773	0.015761
chr17	16440179	16440253	16142074	0	+	0.5	(0.49,0.53]	chr17	1300752	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG29	ENSG00000175061.18	ENST00000475947.7:ENST00000584177.5:ENST00000487066.6:ENST00000580180.6:ENST00000660020.1:ENST00000665646.1:ENST00000481898.5:ENST00000660419.1:ENST00000668333.1:ENST00000667979.1:ENST00000663781.1:ENST00000664939.1:ENST00000491009.6:ENST00000583400.7:ENST00000654778.1:ENST00000497774.6:ENST00000669136.1:ENST00000659884.1:ENST00000582911.5:ENST00000580770.5:ENST00000581718.6:ENST00000579473.6:ENST00000581361.5:ENST00000477249.7:ENST00000484836.2:ENST00000655540.1:ENST00000483140.6:ENST00000480811.6:ENST00000662869.1:ENST00000671170.1:ENST00000666215.1:ENST00000653954.1:ENST00000584926.5:ENST00000654561.1:ENST00000584141.5:ENST00000658116.1:ENST00000492250.5:ENST00000654356.1:ENST00000578757.5:ENST00000475953.5:ENST00000470491.6:ENST00000581913.5:ENST00000660462.1:ENST00000481027.5:ENST00000472367.5:ENST00000483588.2:ENST00000478103.6:ENST00000460249.5:ENST00000658943.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	58	158	2	1.3284	1.47226	1.61612	0.00790787	0.00266739	0.0516786	0.0240814
chr6	67887362	67887461	7784134	0	-	0.464646	(0.455,0.49]	chr6	596229	5	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	118	302	2	1.36274	1.471765	1.58079	0.00405406	0.00110349	0.0324137	0.0120248
chrX	1389337	1389434	18925598	0	-	0.628866	(0.59,1]	chrX	1612959	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A6	ENSG00000169100.14	ENST00000381401.11:ENST00000475167.6:ENST00000484026.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	79	2	1.29826	1.471165	1.64407	0.0486046	0.0227132	0.175495	0.107633
chr6	24719154	24719222	7638921	0	-	0.308824	(0.29,0.33]	chr6	581827	1	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	17	31	2	1.31574	1.470465	1.62519	0.0496396	0.0201432	0.186234	0.0984041
chr8	100721856	100721948	9976145	0	-	0.576087	(0.53,0.59]	chr8	752718	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000519004.5:ENST00000522387.5:ENST00000523555.6:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	549	1921	2	0.913481	1.4702605	2.02704	0.0291615	1.99617e-5	0.129773	4.86229e-4
chr11	65423637	65423689	11984577	0	+	0.442308	(0.42,0.455]	chr11	920387	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1:ENSG10010136441.1	ENSG00000245532.9:ENSG00000278050.1	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1:ENST00000620525.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	61	156	2	1.43714	1.470055	1.50297	0.00460566	0.00424136	0.0356811	0.0330232
chrM	6772	6868	19377205	0	+	0.4375	(0.42,0.455]	chrM	1649805	9	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	216	539	2	1.29207	1.468975	1.64588	0.00479852	3.74262e-4	0.0365464	0.00560631
chr11	62853732	62853817	12411575	0	-	0.423529	(0.42,0.455]	chr11	961819	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG1	ENSG00000255717.7	ENST00000665371.1:ENST00000539921.6:ENST00000538654.6:ENST00000540725.6:ENST00000658540.1:ENST00000537068.5:ENST00000537925.5:ENST00000541416.6:ENST00000541578.6:ENST00000537024.6:ENST00000663967.1:ENST00000670323.1:ENST00000660547.1:ENST00000661616.1:ENST00000670469.1:ENST00000537869.5:ENST00000664307.1:ENST00000665512.1:ENST00000656268.1:ENST00000535689.6:ENST00000663237.1:ENST00000544550.6:ENST00000660730.1:ENST00000660960.1:ENST00000662229.1:ENST00000670729.1:ENST00000655919.1:ENST00000671236.1:ENST00000667655.1:ENST00000653690.1:ENST00000661936.1:ENST00000544983.2:ENST00000535076.6:ENST00000656240.1:ENST00000539975.5:ENST00000656589.1:ENST00000545920.2:ENST00000537965.6:ENST00000670502.1:ENST00000662400.1:ENST00000663092.1:ENST00000656241.1:ENST00000652879.1:ENST00000668309.1:ENST00000545440.5:ENST00000542112.5:ENST00000541615.5:ENST00000538266.5:ENST00000545688.5:ENST00000540865.5:ENST00000539303.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	17	43	2	1.43354	1.468835	1.50413	0.0450749	0.0156511	0.167319	0.0843265
chr5	139318907	139318970	6248987	0	+	0.460317	(0.455,0.49]	chr5	486989	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	MATR3	ENSG00000280987.4:ENSG00000015479.20	ENST00000509990.5:ENST00000361059.7:ENST00000394800.6:ENST00000502929.5:ENST00000504203.5:ENST00000512876.5:ENST00000504311.5:ENST00000502499.5:ENST00000510056.5:ENST00000511249.5:ENST00000394805.8:ENST00000509918.5:ENST00000503811.5:ENST00000511978.5:ENST00000618441.5:ENST00000504643.5:ENST00000515833.2:ENST00000505625.5:ENST00000502422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	19	49	2	1.18542	1.46831	1.7512	0.0497596	0.00901651	0.179045	0.0572398
chr9	131198515	131198615	10496372	0	+	0.63	(0.59,1]	chr9	793351	14	CDS	CDS:EXON_MRNA:INTRON	NUP214	ENSG00000126883.17	ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000451030.5:ENST00000651334.1:ENST00000453861.6:ENST00000483497.6:ENST00000531600.1:ENST00000650694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	90	2	1.28271	1.46826	1.65381	0.0462087	0.0170739	0.176878	0.0902515
chr18	57601053	57601153	17137458	0	-	0.32	(0.29,0.33]	chr18	1407137	5	UTR3	UTR3:EXON_MRNA	NARS1	ENSG00000134440.12	ENST00000256854.10	protein_coding	protein_coding	protein_coding	protein_coding	25	45	2	1.15704	1.46609	1.77514	0.0423539	0.00817479	0.159832	0.0537387
chr19	54207475	54207575	17390462	0	+	0.67	(0.59,1]	chr19	1447219	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5:ENST00000302907.9:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	229	2	1.279	1.466015	1.65303	0.016677	0.00690507	0.0882485	0.0471334
chr4	17802316	17802414	5337583	0	-	0.44898	(0.42,0.455]	chr4	429240	18	UTR3	UTR3:EXON_MRNA	DCAF16	ENSG00000163257.11	ENST00000382247.6	protein_coding	protein_coding	protein_coding	protein_coding	12	31	2	1.34146	1.46554	1.58962	0.053512	0.0352	0.197317	0.142054
chr12	56663815	56663910	13352203	0	-	0.378947	(0.36,0.39]	chr12	1051779	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PTGES3	ENSG00000110958.16	ENST00000537473.2:ENST00000614328.4:ENST00000262033.11:ENST00000414274.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	49	109	2	1.43274	1.465385	1.49803	0.00955777	0.00398947	0.060021	0.0319027
chr1	154157248	154157346	1302311	0	-	0.377551	(0.36,0.39]	chr1	131065	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TPM3	ENSG00000143549.21	ENST00000611659.4:ENST00000368533.8:ENST00000368545.7:ENST00000469717.5:ENST00000330188.13:ENST00000341485.10:ENST00000312970.13:ENST00000341372.8:ENST00000651731.1:ENST00000328159.9:ENST00000509409.5:ENST00000651873.1:ENST00000271850.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	41	89	2	1.32378	1.46454	1.6053	0.0114311	0.00609129	0.0670314	0.0439136
chr11	65855240	65855335	12423157	0	-	0.726316	(0.59,1]	chr11	964155	7	UTR3	UTR3:EXON_MRNA:INTRON	CFL1	ENSG00000172757.13	ENST00000527752.1:ENST00000308162.10:ENST00000525451.6:ENST00000530945.1:ENST00000527344.5:ENST00000531407.5:ENST00000524553.5:ENST00000534769.5:ENST00000531413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	30	168	2	1.38866	1.46435	1.54004	0.0183903	0.0103732	0.0945306	0.063428
chr11	102398671	102398768	12562705	0	-	0.319588	(0.29,0.33]	chr11	974345	25	UTR3	UTR3:EXON_MRNA	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7	protein_coding	protein_coding	protein_coding	protein_coding	24	45	2	1.36055	1.464065	1.56758	0.0338628	0.0103721	0.141431	0.0639945
chr16	69118105	69118201	15993723	0	-	0.4375	(0.42,0.455]	chr16	1284017	2	UTR3	UTR3:EXON_MRNA	CHTF8:DERPC	ENSG00000168802.14:ENSG00000286140.1	ENST00000448552.7:ENST00000306585.9:ENST00000519520.6:ENST00000523421.5:ENST00000518041.5	protein_coding	protein_coding	protein_coding	protein_coding	14	36	2	1.33774	1.463705	1.58967	0.0459157	0.026634	0.176878	0.118265
chr1	51788170	51788265	191698	0	+	0.273684	[0,0.29]	chr1	24578	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000453295.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000475697.5:ENST00000531819.5:ENST00000625138.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	49	2	1.30952	1.46334	1.61716	0.0318389	0.00734003	0.134455	0.0491503
chrM	13192	13287	19377273	0	+	0.410526	(0.39,0.42]	chrM	1649828	10	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	102	235	2	1.07576	1.46258	1.8494	0.0205312	1.88904e-4	0.0996046	0.00326225
chr22	16615013	16615111	18285858	0	+	0.479592	(0.455,0.49]	chr22	1551656	26	EXON_LNCRNA	EXON_LNCRNA:INTRON	TPTEP1:AC005301.9	ENSG00000100181.22:ENSG00000283633.1	ENST00000558085.6:ENST00000400593.6:ENST00000592918.5:ENST00000592107.5:ENST00000426585.5:ENST00000588548.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	31	80	2	1.33335	1.46194	1.59053	0.0188734	0.00596508	0.0934721	0.0428562
chr14	32202097	32202151	14208091	0	+	0.518519	(0.49,0.53]	chr14	1113245	2	EXON_SMALL	EXON_SMALL	RNU6-7	ENSG00000201654.1	ENST00000364784.1	snRNA	snRNA	snRNA	snRNA	61	169	2	1.43692	1.4616	1.48628	0.0070903	0.00303788	0.0479419	0.0258496
chrM	2329	2427	19377162	0	+	0.408163	(0.39,0.42]	chrM	1649798	19	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	11560	26391	2	1.34155	1.461095	1.58064	0.00199239	3.06245e-4	0.0189001	0.00474141
chr1	150220492	150220591	1288438	0	-	0.272727	[0,0.29]	chr1	128126	22	UTR3	UTR3:EXON_MRNA	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000616917.4:ENST00000436748.6:ENST00000534437.1:ENST00000369114.9:ENST00000369115.3:ENST00000533654.5	protein_coding	protein_coding	protein_coding	protein_coding	16	27	2	1.39854	1.460985	1.52343	0.0477167	0.0301267	0.17993	0.130016
chr5	113018829	113018928	6153947	0	+	0.444444	(0.42,0.455]	chr5	480731	55	UTR3	UTR3:EXON_MRNA	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000389063.3	protein_coding	protein_coding	protein_coding	protein_coding	21	56	2	1.43196	1.4593349999999998	1.48671	0.0399324	0.0109146	0.162323	0.0663714
chr21	8393037	8393136	18041460	0	+	0.606061	(0.59,1]	chr21	1530861	42	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	1113	6083	2	1.41485	1.457125	1.4994	0.00369496	0.00269645	0.03026	0.0243373
chr9	113260767	113260865	10425124	0	+	0.306122	(0.29,0.33]	chr9	784741	4	UTR3	UTR3:EXON_MRNA	SLC31A1	ENSG00000136868.11	ENST00000374212.5	protein_coding	protein_coding	protein_coding	protein_coding	15	28	2	1.2865	1.456345	1.62619	0.0475597	0.0358231	0.173842	0.147298
chr4	82359470	82359535	5493528	0	-	0.430769	(0.42,0.455]	chr4	439986	1	CDS	CDS:EXON_MRNA:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000514671.5:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	32	82	2	1.43372	1.455355	1.47699	0.0136413	0.00918205	0.0760116	0.0580767
chr11	9445878	9445976	11792895	0	+	0.397959	(0.39,0.42]	chr11	902941	8	UTR3	UTR3:EXON_MRNA	IPO7	ENSG00000205339.10	ENST00000379719.8	protein_coding	protein_coding	protein_coding	protein_coding	20	47	2	1.36341	1.45522	1.54703	0.029381	0.0167468	0.129773	0.0885385
chr11	65425713	65425812	11984600	0	+	0.333333	(0.33,0.36]	chr11	920390	17	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	40	79	2	1.25435	1.45463	1.65491	0.0155104	0.00665195	0.0838725	0.0457104
chr9	83976994	83977051	10712967	0	-	0.473684	(0.455,0.49]	chr9	810533	1	CDS	CDS:EXON_MRNA	HNRNPK	ENSG00000165119.21	ENST00000376281.8:ENST00000376263.8:ENST00000351839.7:ENST00000360384.9:ENST00000457156.5:ENST00000472778.5:ENST00000483135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	42	2	1.34517	1.454335	1.5635	0.0438219	0.018773	0.171235	0.0958835
chr1	22092610	22092710	93090	0	+	0.5	(0.49,0.53]	chr1	10799	12	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	21	56	2	1.2532	1.454055	1.65491	0.0273036	0.0213636	0.12106599999999999	0.102709
chr15	64683978	64684078	14978113	0	+	0.42	(0.39,0.42]	chr15	1177327	24	UTR3	UTR3:EXON_MRNA	ZNF609	ENSG00000180357.9	ENST00000326648.4	protein_coding	protein_coding	protein_coding	protein_coding	15	36	2	1.40547	1.45296	1.50045	0.0341741	0.0335886	0.140996	0.1408
chr17	40413552	40413625	16539026	0	-	0.287671	[0,0.29]	chr17	1354689	2	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000581055.1	protein_coding	protein_coding	protein_coding	protein_coding	19	34	2	1.42203	1.4528699999999999	1.48371	0.0514084	0.0176719	0.192759	0.0929002
chr5	43289843	43289942	6560156	0	-	0.313131	(0.29,0.33]	chr5	508332	25	UTR3	UTR3:EXON_MRNA	HMGCS1	ENSG00000112972.15	ENST00000325110.11:ENST00000433297.2	protein_coding	protein_coding	protein_coding	protein_coding	24	43	2	1.29906	1.451435	1.60381	0.0320237	0.0126846	0.133433	0.0719798
chr4	176328623	176328721	5242227	0	+	0.306122	(0.29,0.33]	chr4	421869	4	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	20	39	2	1.38088	1.4493	1.51772	0.0529272	0.013	0.195536	0.0730429
chr7	26196906	26196961	8734103	0	-	0.327273	(0.29,0.33]	chr7	666673	1	CDS	CDS:EXON_MRNA	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1:ENST00000495810.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	54	98	2	1.0228	1.448855	1.87491	0.0446965	5.98811e-4	0.172746	0.0075062
chr7	139417537	139417633	8566258	0	+	0.541667	(0.53,0.59]	chr7	653675	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000619796.4:ENST00000354926.9:ENST00000456182.5:ENST00000263545.7:ENST00000498518.1:ENST00000482860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	54	2	1.2114	1.44872	1.68604	0.0490353	0.0138057	0.184228	0.0757871
chr10	68983989	68984087	11093417	0	+	0.408163	(0.39,0.42]	chr10	843302	13	UTR3	UTR3:EXON_MRNA	DDX21	ENSG00000165732.13	ENST00000354185.9:ENST00000620315.1	protein_coding	protein_coding	protein_coding	protein_coding	16	38	2	1.28955	1.448655	1.60776	0.0387723	0.0291807	0.149227	0.129773
chr1	634723	634822	514	0	+	0.525253	(0.49,0.53]	chr1	108	13	EXON_PSEUDO	EXON_PSEUDO	MTCO3P12	ENSG00000198744.5	ENST00000416718.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	54	144	2	1.26972	1.44791	1.6261	0.01156	0.00270249	0.0682352	0.0236463
chr1	32043587	32043684	125867	0	+	0.360825	(0.36,0.39]	chr1	15466	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	KHDRBS1	ENSG00000121774.18	ENST00000327300.12:ENST00000307714.12:ENST00000484270.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	39	89	2	1.30975	1.44725	1.58475	0.0239587	0.00320226	0.112723	0.0268386
chr12	56110398	56110477	12898064	0	+	0.455696	(0.455,0.49]	chr12	1004155	1	CDS	CDS:EXON_MRNA	PA2G4	ENSG00000170515.14	ENST00000552766.5:ENST00000303305.11:ENST00000552528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	19	49	2	1.32458	1.44721	1.56984	0.0355117	0.0151327	0.147058	0.0821639
chr7	12369930	12370026	8683366	0	-	0.427083	(0.42,0.455]	chr7	664007	5	CDS	CDS:UTR3:EXON_MRNA	VWDE	ENSG00000146530.14	ENST00000275358.8:ENST00000452576.6:ENST00000521169.5:ENST00000614403.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	55	2	1.25538	1.445465	1.63555	0.0293556	0.0152287	0.128649	0.0828908
chr21	8206327	8206423	18041079	0	+	0.791667	(0.59,1]	chr21	1530806	5	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	283	1741	2	1.15796	1.44446	1.73096	0.0178692	8.32971e-4	0.0936212	0.0102956
chr8	144095099	144095199	9650282	0	+	0.79	(0.59,1]	chr8	731506	1	CDS_START	CDS_START:CDS:EXON_MRNA	CYC1	ENSG00000179091.5	ENST00000533444.1:ENST00000318911.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	68	2	1.42148	1.44445	1.46742	0.0566164	0.0335275	0.194397	0.140586
chr12	54238760	54238860	13342914	0	-	0.39	(0.36,0.39]	chr12	1049602	74	UTR3	UTR3:EXON_MRNA	CBX5	ENSG00000094916.16	ENST00000209875.9	protein_coding	protein_coding	protein_coding	protein_coding	35	78	2	1.30975	1.444395	1.57904	0.0239587	0.00441664	0.112723	0.0339417
chr4	151104176	151104239	5165596	0	+	0.396825	(0.39,0.42]	chr4	417325	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPS3A	ENSG00000145425.10	ENST00000509736.5:ENST00000274065.9:ENST00000507485.1:ENST00000514682.5:ENST00000515818.5:ENST00000512690.5:ENST00000512797.5:ENST00000507327.5:ENST00000515792.5:ENST00000506126.5:ENST00000510993.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	97	2	1.44251	1.4440149999999998	1.44552	0.0112674	0.00652703	0.0665494	0.0455934
chr4	176330972	176331070	5242251	0	+	0.346939	(0.33,0.36]	chr4	421869	28	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	29	56	2	1.41358	1.44185	1.47012	0.0176522	0.0129192	0.0927995	0.0723608
chr1	24654854	24654945	101990	0	+	0.516484	(0.49,0.53]	chr1	11987	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000479034.5:ENST00000447431.6:ENST00000596378.1:ENST00000470243.5:ENST00000496882.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	72	2	1.16252	1.4415149999999999	1.72051	0.0540936	0.00340607	0.199419	0.0283456
chr12	51243341	51243440	12876235	0	+	0.434343	(0.42,0.455]	chr12	1000617	8	UTR3	UTR3:EXON_MRNA:INTRON	DAZAP2	ENSG00000183283.16	ENST00000449723.7:ENST00000425012.6:ENST00000412716.8:ENST00000604900.5:ENST00000436900.2:ENST00000552459.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	63	2	1.17109	1.440585	1.71008	0.0429032	0.00561522	0.168598	0.0410049
chr5	133972370	133972470	6843266	0	-	0.39	(0.36,0.39]	chr5	523565	6	UTR3	UTR3:EXON_MRNA	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6	protein_coding	protein_coding	protein_coding	protein_coding	18	39	2	1.30989	1.44025	1.57061	0.0366994	0.0228883	0.145024	0.108345
chr21	8393827	8393926	18041468	0	+	0.525253	(0.49,0.53]	chr21	1530861	50	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	8199	21795	2	1.28783	1.439875	1.59192	0.00296756	3.43249e-4	0.0254149	0.00521839
chr22	40827143	40827229	18517898	0	-	0.581395	(0.53,0.59]	chr22	1580945	1	CDS	CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ST13	ENSG00000100380.14	ENST00000216218.8:ENST00000620312.4:ENST00000480048.5:ENST00000455824.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	42	2	1.40945	1.439875	1.4703	0.0386603	0.0385441	0.157058	0.149227
chr12	19457179	19457273	13233339	0	-	0.446809	(0.42,0.455]	chr12	1037586	11	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P4	ENSG00000245205.3	ENST00000359165.5	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	47	116	2	1.27048	1.4397950000000002	1.60911	0.015945	0.00267471	0.0859083	0.0241463
chr11	62593401	62593496	12409358	0	-	0.442105	(0.42,0.455]	chr11	961036	3	UTR3	UTR3:EXON_MRNA	MTA2	ENSG00000149480.7	ENST00000278823.7:ENST00000524902.5	protein_coding	protein_coding	protein_coding	protein_coding	23	58	2	1.32876	1.43805	1.54734	0.0283205	0.0119962	0.127654	0.0700876
chr1	634128	634228	508	0	+	0.52	(0.49,0.53]	chr1	108	7	EXON_PSEUDO	EXON_PSEUDO	MTATP6P1	ENSG00000248527.1	ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	67	176	2	1.04675	1.4373	1.82785	0.0273988	6.05592e-4	0.123783	0.00756733
chr1	31918969	31919065	921301	0	-	0.46875	(0.455,0.49]	chr1	96943	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000457805.6:ENST00000602683.5:ENST00000470404.5:ENST00000532001.6:ENST00000528253.3:ENST00000484483.1:ENST00000468531.1:ENST00000534796.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	24	61	2	1.39041	1.4371	1.48379	0.01863	0.0166566	0.0952402	0.0878919
chr1	31919462	31919562	921306	0	-	0.4	(0.39,0.42]	chr1	96944	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	RP11-84A19.4:PTP4A2	ENSG00000269967.1:ENSG00000184007.22	ENST00000602889.1:ENST00000647444.2:ENST00000602725.5:ENST00000649841.1:ENST00000528253.3:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	20	47	2	1.22198	1.4370150000000002	1.65205	0.0489386	0.0107174	0.183874	0.0652085
chr6	67886267	67886367	7784123	0	-	0.41	(0.39,0.42]	chr6	596226	20	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	74	166	2	1.18087	1.43689	1.69291	0.0134262	0.00132006	0.0743579	0.0144011
chr6	12514460	12514548	7056032	0	+	0.363636	(0.36,0.39]	chr6	540326	5	EXON_PSEUDO	EXON_PSEUDO	RPL15P3	ENSG00000212802.4	ENST00000391491.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	59	124	2	1.25349	1.434275	1.61506	0.0110239	0.00337459	0.0665375	0.0288632
chr1	42696716	42696792	161376	0	+	0.486842	(0.455,0.49]	chr1	20238	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YBX1	ENSG00000065978.19	ENST00000321358.12:ENST00000332220.10:ENST00000436427.1:ENST00000467957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	34	85	2	1.29081	1.4341650000000001	1.57752	0.0179378	0.00660782	0.0939469	0.0455209
chr13	45338608	45338708	14005945	0	-	0.28	[0,0.29]	chr13	1098095	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TPT1	ENSG00000133112.17	ENST00000616577.4:ENST00000530705.6:ENST00000379056.5:ENST00000528619.5:ENST00000529421.5:ENST00000484604.5:ENST00000490277.1:ENST00000533567.5:ENST00000530245.5:ENST00000379060.8:ENST00000379055.5:ENST00000309246.9:ENST00000527226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	39	68	2	1.29585	1.434075	1.5723	0.0291649	0.0041665	0.129773	0.032734
chr4	82373678	82373756	5493674	0	-	0.628205	(0.59,1]	chr4	440005	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	38	200	2	1.05326	1.434055	1.81485	0.0454875	0.00329585	0.168044	0.0284751
chr3	98580206	98580301	4319539	0	-	0.242105	[0,0.29]	chr3	360252	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	29	51	2	1.23542	1.433605	1.63179	0.048523	0.00530531	0.182362	0.0390994
chr3	196050464	196050562	4663145	0	-	0.408163	(0.39,0.42]	chr3	385550	13	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	26	58	2	1.30354	1.430575	1.55761	0.023042	0.0135287	0.109066	0.0745701
chr11	65444753	65444851	11984791	0	+	0.561224	(0.53,0.59]	chr11	920392	3	EXON_LNCRNA	EXON_LNCRNA:PRIMIRNA	NEAT1:MIR612	ENSG00000245532.9:ENSG00000283791.1	ENST00000501122.2:ENST00000384994.1	miRNA	lncRNA	miRNA:lncRNA	lncRNA:primary_miRNA	36	112	2	1.34371	1.43037	1.51703	0.0132787	0.00774437	0.0740932	0.0515221
chr12	110346838	110346931	13085918	0	+	0.268817	[0,0.29]	chr12	1020554	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	58	2	1.14921	1.429055	1.7089	0.045386	0.00352452	0.175064	0.0290345
chr22	20917670	20917758	18299856	0	+	0.784091	(0.59,1]	chr22	1553631	4	UTR5	UTR5:EXON_MRNA	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	22	119	2	1.33763	1.4280300000000001	1.51843	0.0276347	0.0233654	0.122497	0.110544
chrM	2037	2134	19377159	0	+	0.371134	(0.36,0.39]	chrM	1649798	16	EXON_SMALL	EXON_SMALL	MT-RNR2	ENSG00000210082.2	ENST00000387347.2	Mt_rRNA	Mt_rRNA	Mt_rRNA	Mt_rRNA	9311	18979	2	1.22403	1.42793	1.63183	0.00410936	2.0159e-4	0.0324032	0.00342414
chr2	231464353	231464452	3226827	0	-	0.656566	(0.59,1]	chr2	283897	1	UTR5	UTR5:EXON_MRNA:INTRON	NCL	ENSG00000115053.17	ENST00000322723.9:ENST00000676514.1:ENST00000678828.1:ENST00000676798.1:ENST00000678246.1:ENST00000679348.1:ENST00000678729.1:ENST00000678849.1:ENST00000678405.1:ENST00000676913.1:ENST00000678131.1:ENST00000678364.1:ENST00000676690.1:ENST00000461347.5:ENST00000677786.1:ENST00000484328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	140	2	1.17368	1.426655	1.67963	0.035443	0.012703	0.146776	0.0725185
chr15	40036240	40036332	15230345	0	-	0.423913	(0.42,0.455]	chr15	1198267	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRP14	ENSG00000140319.11	ENST00000267884.11:ENST00000558527.5:ENST00000558720.5:ENST00000560773.5:ENST00000559439.5:ENST00000559475.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	45	2	1.31144	1.42661	1.54178	0.0403077	0.0183605	0.153343	0.0928041
chr19	6414017	6414111	17442182	0	-	0.37234	(0.36,0.39]	chr19	1456770	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000597656.5:ENST00000595223.5	protein_coding	protein_coding	protein_coding	protein_coding	75	155	2	1.28553	1.42595	1.56637	0.00912462	0.00208284	0.0577941	0.0204181
chr19	39840701	39840787	17563558	0	-	0.709302	(0.59,1]	chr19	1475761	2	CDS	CDS:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBL	ENSG00000105202.9	ENST00000221801.8:ENST00000594443.5:ENST00000597224.5:ENST00000601274.5:ENST00000597634.5:ENST00000598417.5:ENST00000599159.1:ENST00000594309.5:ENST00000599134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	27	146	2	1.31236	1.4256449999999998	1.53893	0.0247473	0.0134572	0.113389	0.075018
chr9	107323889	107323953	10410480	0	+	0.390625	(0.39,0.42]	chr9	784019	1	CDS	CDS:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	20	45	2	1.09408	1.4255149999999999	1.75695	0.0577121	0.0126299	0.197892	0.0718207
chr10	1040507	1040604	11338968	0	-	0.329897	(0.29,0.33]	chr10	864656	15	UTR3	UTR3:EXON_MRNA	IDI1	ENSG00000067064.12	ENST00000429642.2:ENST00000381344.8	protein_coding	protein_coding	protein_coding	protein_coding	26	47	2	1.40256	1.42442	1.44628	0.0244568	0.0171651	0.114841	0.0906688
chr20	57498153	57498252	18021539	0	-	0.383838	(0.36,0.39]	chr20	1527368	11	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CTCFL	ENSG00000124092.13	ENST00000423479.7:ENST00000609232.5:ENST00000429804.7:ENST00000608263.5:ENST00000243914.8:ENST00000371196.6	protein_coding	protein_coding	protein_coding	protein_coding	16	35	2	1.39109	1.42409	1.45709	0.0417071	0.0313127	0.165482	0.131233
chr1	24672783	24672883	102179	0	+	0.4	(0.39,0.42]	chr1	12034	6	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.17	ENST00000323848.14:ENST00000447431.6	protein_coding	protein_coding	protein_coding	protein_coding	17	40	2	1.34729	1.42387	1.50045	0.0335886	0.0314286	0.1408	0.131462
chr21	8210789	8210888	18041125	0	+	0.525253	(0.49,0.53]	chr21	1530812	15	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	8498	22318	2	1.26318	1.42368	1.58418	0.00346234	3.63472e-4	0.0286293	0.00546813
chr20	50583395	50583492	17816216	0	+	0.412371	(0.39,0.42]	chr20	1507152	8	UTR3	UTR3:EXON_MRNA	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	13	31	2	1.33672	1.4228399999999999	1.50896	0.052263	0.0433135	0.194473	0.162116
chr1	45614095	45614181	175137	0	+	0.406977	(0.39,0.42]	chr1	22744	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7:ENST00000530073.5:ENST00000481782.1:ENST00000531612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	26	60	2	1.38062	1.421615	1.46261	0.021905	0.0136973	0.104992	0.0752082
chr10	68341584	68341680	11089759	0	+	0.489583	(0.455,0.49]	chr10	842851	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	HNRNPH3	ENSG00000096746.18	ENST00000469172.5:ENST00000265866.12:ENST00000354695.5:ENST00000481819.5:ENST00000491200.5:ENST00000490442.5:ENST00000478698.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	29	72	2	1.28273	1.4214099999999998	1.56009	0.0210935	0.010368	0.102029	0.063428
chr11	65425015	65425115	11984593	0	+	0.45	(0.42,0.455]	chr11	920390	10	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	122	296	2	1.3923	1.420825	1.44935	0.00343236	0.00238968	0.0283927	0.0225356
chr1	28236360	28236456	115309	0	+	0.625	(0.59,1]	chr1	14091	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP5IF1	ENSG00000130770.18	ENST00000497986.5:ENST00000335514.10:ENST00000468425.2:ENST00000465645.1	protein_coding	protein_coding	protein_coding	protein_coding	29	157	2	1.30095	1.42077	1.54059	0.026813	0.0106099	0.121184	0.0645709
chr17	40416421	40416512	16539056	0	-	0.362637	(0.36,0.39]	chr17	1354699	1	CDS	CDS:EXON_MRNA	TOP2A	ENSG00000131747.15	ENST00000423485.6:ENST00000581055.1	protein_coding	protein_coding	protein_coding	protein_coding	18	38	2	1.1769	1.418625	1.66035	0.0477284	0.026191	0.174444	0.119224
chrX	24077460	24077556	18616687	0	+	0.40625	(0.39,0.42]	chrX	1589843	8	UTR3	UTR3:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	61	140	2	1.14608	1.41656	1.68704	0.0215623	0.00130268	0.10354	0.0137061
chr20	16670691	16670742	17914718	0	-	0.490196	(0.49,0.53]	chr20	1516018	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000200494.1	ENST00000363624.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	40	106	2	1.37514	1.415335	1.45553	0.0102217	0.00885864	0.062872	0.0564796
chr16	87404086	87404185	15801167	0	+	0.444444	(0.42,0.455]	chr16	1257525	11	UTR3	UTR3:EXON_MRNA	MAP1LC3B	ENSG00000140941.14	ENST00000650688.1:ENST00000268607.10:ENST00000564844.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	43	2	1.39384	1.4129	1.43196	0.0399324	0.0260351	0.162323	0.117079
chr10	43386357	43386450	11461756	0	-	0.247312	[0,0.29]	chr10	873953	9	UTR3	UTR3:EXON_MRNA	HNRNPF	ENSG00000169813.17	ENST00000356053.7:ENST00000357065.8:ENST00000544000.5:ENST00000443950.6:ENST00000682386.1:ENST00000337970.7	protein_coding	protein_coding	protein_coding	protein_coding	56	87	2	1.2017	1.411555	1.62141	0.022006	0.00293437	0.105474	0.025146
chr10	100363228	100363328	11219492	0	+	0.42	(0.39,0.42]	chr10	853930	24	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	50	112	2	1.33865	1.41112	1.48359	0.0105538	0.00537494	0.0644466	0.0406564
chr3	160428752	160428847	3853065	0	+	0.368421	(0.36,0.39]	chr3	327472	1	CDS	CDS:EXON_MRNA	SMC4	ENSG00000113810.16	ENST00000357388.8:ENST00000469762.5:ENST00000462787.5:ENST00000344722.5:ENST00000462668.5:ENST00000488017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	44	2	1.38287	1.409165	1.43546	0.0446017	0.0175981	0.172386	0.0925619
chr12	54283826	54283885	12891465	0	+	0.38983	(0.36,0.39]	chr12	1002939	1	CDS_STOP	CDS_STOP:CDS:UTR3:UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000547708.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000679273.1:ENST00000678448.1:ENST00000677636.1:ENST00000678876.1:ENST00000677945.1:ENST00000678934.1:ENST00000678597.1:ENST00000678873.1:ENST00000677778.1:ENST00000677191.1:ENST00000678456.1:ENST00000676572.1:ENST00000679344.1:ENST00000678212.1:ENST00000677224.1:ENST00000677279.1:ENST00000678513.1:ENST00000676707.1:ENST00000679063.1:ENST00000678279.1:ENST00000677539.1:ENST00000679079.1:ENST00000678970.1:ENST00000676886.1:ENST00000678412.1:ENST00000676472.1:ENST00000678611.1:ENST00000676951.1:ENST00000676853.1:ENST00000678424.1:ENST00000678581.1:ENST00000551679.1:ENST00000677840.1:ENST00000679026.1:ENST00000677518.1:ENST00000677847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	66	145	2	1.33436	1.4091399999999998	1.48392	0.0123954	0.00278182	0.070731	0.0241009
chr18	6462341	6462436	17007685	0	-	0.378947	(0.36,0.39]	chr18	1397496	3	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO	RPL6P27	ENSG00000235552.4	ENST00000489915.1:ENST00000583065.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript:transcribed_processed_pseudogene	28	57	2	1.16968	1.4084349999999999	1.64719	0.0389958	0.0078359	0.15871	0.0512668
chr1	226071569	226071659	738419	0	+	0.377778	(0.36,0.39]	chr1	74476	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H3-3A	ENSG00000163041.13	ENST00000366815.10:ENST00000655399.1:ENST00000656829.1:ENST00000661429.1:ENST00000366813.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	33	70	2	1.14572	1.40841	1.6711	0.0402806	0.00399937	0.163285	0.0319775
chr5	14652138	14652237	6462532	0	-	0.454545	(0.42,0.455]	chr5	502940	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P13	ENSG00000250182.3	ENST00000503537.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	54	138	2	1.22551	1.40769	1.58987	0.0203601	0.00206979	0.098478	0.0194849
chr16	177411	177466	15480753	0	+	0.727273	(0.59,1]	chr16	1224211	1	UTR3	UTR3:EXON_MRNA	HBA1	ENSG00000206172.8	ENST00000320868.9:ENST00000472694.1:ENST00000397797.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	191	1036	2	1.07483	1.407435	1.74004	0.0258478	8.30684e-4	0.118465	0.0097471
chr19	34365266	34365366	17300191	0	+	0.65	(0.59,1]	chr19	1429816	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	GPI	ENSG00000105220.17	ENST00000587521.7:ENST00000587384.6:ENST00000592277.5:ENST00000642240.1:ENST00000415930.8:ENST00000588991.7:ENST00000592144.5:ENST00000589504.1:ENST00000590375.5:ENST00000646312.1:ENST00000356487.11:ENST00000589399.6:ENST00000591204.5:ENST00000589640.5:ENST00000647446.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	109	2	1.25327	1.4071500000000001	1.56103	0.0448932	0.0154192	0.166675	0.0833655
chr3	129315902	129315998	4444061	0	-	0.78125	(0.59,1]	chr3	369342	1	UTR5	UTR5:EXON_MRNA	H1-10	ENSG00000184897.6	ENST00000333762.6	protein_coding	protein_coding	protein_coding	protein_coding	15	80	2	1.2401	1.4057149999999998	1.57133	0.0518255	0.0290023	0.18423900000000001	0.129773
chr21	8218684	8218784	18041205	0	+	0.82	(0.59,1]	chr21	1530814	61	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	9931	52520	2	1.30037	1.40523	1.51009	0.00637665	0.00239668	0.0449937	0.0225557
chr1	29035825	29035923	120781	0	+	0.408163	(0.39,0.42]	chr1	14653	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1:ENST00000645111.1:ENST00000643302.1:ENST00000645999.1:ENST00000642643.1:ENST00000636666.1:ENST00000644848.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	18	42	2	1.30633	1.405195	1.50406	0.0413581	0.0291749	0.164391	0.128062
chr4	68599	68699	4673647	0	+	0.24	[0,0.29]	chr4	387021	2	INTRON	INTRON	ZNF595	ENSG00000272602.6	ENST00000608255.2:ENST00000609518.5:ENST00000610261.6	protein_coding	protein_coding	protein_coding	protein_coding	23	37	2	1.36048	1.403495	1.44651	0.0289523	0.0274997	0.127375	0.124207
chr1	149712556	149712655	1286241	0	-	0.545455	(0.53,0.59]	chr1	127742	124	INTRON	INTRON	PDE4DIPP7	ENSG00000234232.7	ENST00000617878.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	105	326	2	0.894092	1.401761	1.90943	0.0453004	1.62734e-4	0.168044	0.00290172
chr8	100721765	100721856	9976144	0	-	0.725275	(0.59,1]	chr8	752718	3	UTR5	UTR5:EXON_MRNA	PABPC1	ENSG00000070756.17	ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	52	275	2	1.38991	1.400955	1.412	0.0118943	0.0102563	0.0686664	0.0632915
chr1	24672584	24672684	102177	0	+	0.29	[0,0.29]	chr1	12034	4	UTR3	UTR3:EXON_MRNA	SRRM1	ENSG00000133226.17	ENST00000374389.8:ENST00000323848.14:ENST00000447431.6	protein_coding	protein_coding	protein_coding	protein_coding	22	37	2	1.37916	1.400575	1.42199	0.0445107	0.0201005	0.172163	0.0984041
chr1	207768501	207768598	689955	0	+	0.350515	(0.33,0.36]	chr1	70087	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	CD46	ENSG00000117335.20	ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000469535.5:ENST00000360212.6:ENST00000480003.5:ENST00000496723.1:ENST00000636114.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	50	97	2	1.31939	1.40043	1.48147	0.00947438	0.00937948	0.0595171	0.059126
chr6	7289377	7289474	7586887	0	-	0.309278	(0.29,0.33]	chr6	578694	16	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SSR1	ENSG00000124783.14	ENST00000474597.5:ENST00000650389.1:ENST00000475213.1:ENST00000244763.9:ENST00000397511.6:ENST00000489567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	25	47	2	1.31574	1.400285	1.48483	0.0496396	0.010704	0.186234	0.0651293
chr10	46006027	46006121	11470924	0	-	0.223404	[0,0.29]	chr10	874825	11	UTR3	UTR3:EXON_MRNA	NCOA4	ENSG00000266412.6	ENST00000581486.6:ENST00000585132.5	protein_coding	protein_coding	protein_coding	protein_coding	23	39	2	1.37916	1.399965	1.42077	0.0445107	0.0180229	0.172163	0.0943261
chr5	138473743	138473831	6244808	0	+	0.397727	(0.39,0.42]	chr5	486659	1	EXON_PSEUDO	EXON_PSEUDO	RPL7P19	ENSG00000241458.1	ENST00000469948.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	28	64	2	1.18243	1.3995600000000001	1.61669	0.0400908	0.00666736	0.162954	0.0463685
chr2	74154103	74154202	2740211	0	-	0.515152	(0.49,0.53]	chr2	243880	17	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	16	43	2	1.35761	1.397715	1.43782	0.0469087	0.0258099	0.171977	0.118296
chr11	47468618	47468718	12386794	0	-	0.31	(0.29,0.33]	chr11	956932	28	UTR3	UTR3:EXON_MRNA	CELF1	ENSG00000149187.18	ENST00000310513.10:ENST00000395290.6:ENST00000358597.7:ENST00000395292.6	protein_coding	protein_coding	protein_coding	protein_coding	28	49	2	1.39229	1.3974250000000001	1.40256	0.0244411	0.0171651	0.114841	0.0906688
chr17	41688961	41689038	16226819	0	+	0.688312	(0.59,1]	chr17	1312493	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	EIF1	ENSG00000173812.11	ENST00000469257.2:ENST00000462917.1:ENST00000591776.5:ENST00000482111.1:ENST00000310837.8:ENST00000469308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	53	289	2	1.13916	1.396785	1.65441	0.0353998	0.00278394	0.146606	0.0241009
chr8	100721674	100721765	9976143	0	-	0.593407	(0.59,1]	chr8	752718	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000318607.10:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000517921.2:ENST00000518196.5:ENST00000521067.1:ENST00000519363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	77	403	2	1.32422	1.3963	1.46838	0.0106118	0.00702001	0.0645813	0.0477743
chr22	38486034	38486115	18509619	0	-	0.54321	(0.53,0.59]	chr22	1579959	1	CDS	CDS:EXON_MRNA	DDX17	ENSG00000100201.23	ENST00000403230.3:ENST00000396821.8:ENST00000431312.2:ENST00000216019.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	23	71	2	1.19991	1.394435	1.58896	0.0420308	0.00977359	0.166694	0.0611333
chr3	186789538	186789627	3958288	0	+	0.280899	[0,0.29]	chr3	333880	4	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	51	2	1.37598	1.394285	1.41259	0.0253408	0.015163	0.117089	0.0823194
chr5	179729942	179730042	6414473	0	+	0.3	(0.29,0.33]	chr5	499211	14	UTR3	UTR3:EXON_MRNA	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000680092.1:ENST00000506654.6:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1:ENST00000681342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	108	195	2	1.36108	1.39413	1.42718	0.00706865	0.00257285	0.0478528	0.0229363
chr4	82355248	82355333	5493477	0	-	0.247059	[0,0.29]	chr4	439967	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5:ENST00000508119.5:ENST00000513584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	30	49	2	1.37419	1.3933900000000001	1.41259	0.0253408	0.0165707	0.117089	0.087766
chr1	193089738	193089837	631216	0	+	0.282828	[0,0.29]	chr1	64149	49	UTR3	UTR3:EXON_MRNA:INTRON	RO60	ENSG00000116747.13	ENST00000432079.5:ENST00000400968.7:ENST00000367443.5:ENST00000367444.7:ENST00000367445.7	protein_coding	protein_coding	protein_coding	protein_coding	46	71	2	1.01105	1.392385	1.77372	0.0456508	0.00244864	0.168044	0.0229857
chr8	23567391	23567487	9230668	0	+	0.416667	(0.39,0.42]	chr8	706549	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	58	134	2	1.38162	1.39196	1.4023	0.0114678	0.00498337	0.0677157	0.0369979
chr9	120817514	120817612	10833864	0	-	0.489796	(0.455,0.49]	chr9	820467	16	UTR3	UTR3:EXON_MRNA:INTRON	PSMD5	ENSG00000095261.14	ENST00000373920.6:ENST00000210313.8	protein_coding	protein_coding	protein_coding	protein_coding	14	35	2	1.33854	1.391515	1.44449	0.0504473	0.0373875	0.181202	0.152572
chr7	151082843	151082937	9129267	0	-	0.510638	(0.49,0.53]	chr7	697683	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMUB1	ENSG00000164897.14	ENST00000297533.9:ENST00000392818.7:ENST00000462940.1:ENST00000482202.5:ENST00000476627.5:ENST00000488752.5:ENST00000492838.1	protein_coding	protein_coding	protein_coding	protein_coding	15	40	2	1.31441	1.391035	1.46766	0.0523669	0.0348836	0.194793	0.141505
chr5	141526296	141526378	6875146	0	-	0.365854	(0.36,0.39]	chr5	526382	1	CDS	CDS:EXON_MRNA	DIAPH1	ENSG00000131504.17	ENST00000647433.1:ENST00000389054.8:ENST00000253811.10:ENST00000389057.9:ENST00000398557.8:ENST00000518047.5	protein_coding	protein_coding	protein_coding	protein_coding	14	29	2	1.38287	1.39059	1.39831	0.0520783	0.0446017	0.18423900000000001	0.172386
chr7	135674458	135674556	8553487	0	+	0.295918	(0.29,0.33]	chr7	652937	4	UTR3	UTR3:EXON_MRNA:INTRON	STMP1	ENSG00000243317.8	ENST00000509448.5:ENST00000507606.3:ENST00000422968.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	35	2	1.3604	1.390235	1.42007	0.0347791	0.032126300000000003	0.144346	0.133725
chr16	2760411	2760511	15494876	0	+	0.49	(0.455,0.49]	chr16	1227795	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000571378.5:ENST00000570971.2:ENST00000573498.5:ENST00000572278.1:ENST00000576076.1:ENST00000572952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	23	59	2	1.26154	1.390135	1.51873	0.0501877	0.00943806	0.188246	0.059408999999999997
chr2	86134291	86134377	1926667	0	+	0.476744	(0.455,0.49]	chr2	181493	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PTCD3	ENSG00000132300.19	ENST00000254630.12:ENST00000487043.5:ENST00000469585.5:ENST00000493430.5:ENST00000467273.5:ENST00000494323.5:ENST00000472044.1:ENST00000477520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	37	2	1.21465	1.3896549999999999	1.56466	0.0560488	0.0309562	0.192839	0.131262
chr4	173332179	173332238	5798070	0	-	0.525424	(0.49,0.53]	chr4	456427	1	CDS	CDS:EXON_MRNA	HMGB2	ENSG00000164104.12	ENST00000296503.10:ENST00000446922.6:ENST00000438704.6:ENST00000511316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	65	185	2	1.03126	1.3886	1.74594	0.040189	5.77028e-4	0.163285	0.0073192
chr8	53967133	53967230	9832420	0	-	0.340206	(0.33,0.36]	chr8	743907	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TCEA1	ENSG00000187735.14	ENST00000396401.7:ENST00000521604.7:ENST00000521086.6:ENST00000522635.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	29	2	1.27542	1.388255	1.50109	0.0551658	0.0389841	0.190574	0.158669
chr17	42402642	42402739	16548211	0	-	0.402062	(0.39,0.42]	chr17	1357379	3	UTR3	UTR3:EXON_MRNA	CAVIN1	ENSG00000177469.13	ENST00000357037.6	protein_coding	protein_coding	protein_coding	protein_coding	21	47	2	1.17495	1.3877199999999998	1.60049	0.0522355	0.0133946	0.19442	0.0743429
chr21	8209997	8210096	18041117	0	+	0.59596	(0.59,1]	chr21	1530812	7	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	1782	9210	2	1.24094	1.38769	1.53444	0.00880651	0.00218479	0.0562439	0.0208941
chr1	632853	632950	496	0	+	0.412371	(0.39,0.42]	chr1	107	2	EXON_PSEUDO	EXON_PSEUDO	MTCO2P12	ENSG00000229344.1	ENST00000427426.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	140	301	2	0.813455	1.3875375	1.96162	0.0539214	8.44782e-5	0.198792	0.00158841
chr21	8437242	8437341	18041916	0	+	0.59596	(0.59,1]	chr21	1530900	42	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	1369	7131	2	1.32747	1.3869099999999999	1.44635	0.00577213	0.00352368	0.0417823	0.0298496
chr5	177491420	177491520	6991784	0	-	0.53	(0.49,0.53]	chr5	534966	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDLIM7	ENSG00000196923.14	ENST00000355841.7:ENST00000359895.6:ENST00000493815.5:ENST00000486828.6:ENST00000393551.5:ENST00000505074.5:ENST00000355572.6:ENST00000393546.8:ENST00000506161.5:ENST00000504318.5:ENST00000503346.1:ENST00000503827.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	47	2	1.18312	1.386455	1.58979	0.0496939	0.0211872	0.178816	0.101914
chrM	13572	13667	19377277	0	+	0.484211	(0.455,0.49]	chrM	1649828	14	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	77	182	2	0.955956	1.384963	1.81397	0.037854	5.19369e-4	0.154427	0.00672176
chr11	68491070	68491169	11999803	0	+	0.545455	(0.53,0.59]	chr11	923679	299	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	49	2	1.24745	1.38353	1.51961	0.0487899	0.0261734	0.183329	0.117079
chr20	483660	483760	17871450	0	-	0.37	(0.36,0.39]	chr20	1511949	50	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000619801.5:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000642673.1:ENST00000643641.1:ENST00000644448.1:ENST00000644710.1:ENST00000643980.1:ENST00000647155.1:ENST00000645334.1:ENST00000645768.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	66	2	1.2254	1.380265	1.53513	0.0314091	0.00799924	0.132683	0.052263
chr12	24815412	24815512	13255710	0	-	0.34	(0.33,0.36]	chr12	1038842	55	UTR3	UTR3:EXON_MRNA	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9	protein_coding	protein_coding	protein_coding	protein_coding	25	48	2	1.21823	1.3790499999999999	1.53987	0.0285965	0.0280138	0.126417	0.125893
chrX	132580169	132580223	19233531	0	-	0.407407	(0.39,0.42]	chrX	1634229	2	EXON_SMALL	EXON_SMALL	RNU6-98P	ENSG00000206900.1	ENST00000384173.1	snRNA	snRNA	snRNA	snRNA	68	147	2	1.22317	1.37899	1.53481	0.0128657	0.00309349	0.0721419	0.0263145
chr21	8438035	8438135	18041924	0	+	0.52	(0.49,0.53]	chr21	1530900	50	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	7642	19451	2	1.18274	1.3783249999999998	1.57391	0.00566011	3.93129e-4	0.0412852	0.00584546
chr15	72231079	72231172	15368326	0	-	0.666667	(0.59,1]	chr15	1214203	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PKM	ENSG00000067225.19	ENST00000319622.10:ENST00000389093.7:ENST00000335181.10:ENST00000568883.5:ENST00000565184.6:ENST00000567118.5:ENST00000565154.6:ENST00000569857.5:ENST00000567087.5:ENST00000564276.1:ENST00000566809.1:ENST00000569050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	75	2	1.28809	1.377755	1.46742	0.0575363	0.0335275	0.197301	0.140586
chr3	186785031	186785101	3958228	0	+	0.514286	(0.49,0.53]	chr3	333851	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	EIF4A2	ENSG00000156976.17	ENST00000445596.5:ENST00000426808.5:ENST00000465222.1:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000429589.5:ENST00000495049.5:ENST00000465267.5:ENST00000465032.5:ENST00000486805.5:ENST00000485101.5:ENST00000475653.5:ENST00000443963.5:ENST00000467585.1:ENST00000498746.1:ENST00000466362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	58	2	1.27579	1.37666	1.47753	0.0363846	0.0161595	0.149053	0.0866586
chr10	72275847	72275941	11111183	0	+	0.617021	(0.59,1]	chr10	845359	8	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDIT4	ENSG00000168209.6	ENST00000491934.3:ENST00000471240.2:ENST00000681898.1:ENST00000307365.4:ENST00000473155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	133	2	1.00648	1.37661	1.74674	0.0549246	0.0158071	0.189787	0.085143
chr3	186789448	186789538	3958287	0	+	0.355556	(0.33,0.36]	chr3	333880	3	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5:ENST00000496382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	46	84	2	1.07857	1.3762400000000001	1.67391	0.0301086	0.00472499	0.130016	0.0365486
chr3	196050562	196050661	4663146	0	-	0.363636	(0.36,0.39]	chr3	385550	14	UTR3	UTR3:EXON_MRNA:INTRON	TFRC	ENSG00000072274.13	ENST00000426789.5:ENST00000420415.5:ENST00000360110.9:ENST00000392396.7	protein_coding	protein_coding	protein_coding	protein_coding	39	78	2	1.24418	1.37605	1.50792	0.0236918	0.00651451	0.109365	0.0454205
chr11	32601761	32601822	11898305	0	+	0.393443	(0.39,0.42]	chr11	908931	1	CDS	CDS:EXON_MRNA	EIF3M	ENSG00000149100.13	ENST00000531120.6:ENST00000524896.5:ENST00000526267.1:ENST00000525054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	40	2	1.27598	1.37354	1.4711	0.0454359	0.0269451	0.175244	0.11953
chr6	31531105	31531178	7661078	0	-	0.465753	(0.455,0.49]	chr6	584680	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ATP6V1G2-DDX39B:DDX39B	ENSG00000254870.5:ENSG00000198563.14	ENST00000376185.5:ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000484566.5:ENST00000474961.5:ENST00000396172.6:ENST00000417023.5:ENST00000478365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	18	44	2	1.21465	1.37294	1.53123	0.0560488	0.0186762	0.192839	0.0934721
chr2	25008844	25008895	2559163	0	-	0.45098	(0.42,0.455]	chr2	230012	1	EXON_SMALL	EXON_SMALL:INTRON	RP11-284O8.1:Y_RNA	ENSG00000286645.1:ENSG00000207069.1	ENST00000671429.1:ENST00000384341.1	misc_RNA	misc_RNA	misc_RNA:lncRNA	misc_RNA:lncRNA	430	1006	2	0.884725	1.3719275	1.85913	0.0323264	5.34404e-5	0.134553	0.00119077
chr8	33513474	33513526	9272197	0	+	0.423077	(0.42,0.455]	chr8	709762	1	EXON_SMALL	EXON_SMALL	SNORD13	ENSG00000239039.1	ENST00000459299.1	snoRNA	snoRNA	snoRNA	snoRNA	279	669	2	1.11709	1.3713449999999998	1.6256	0.013441	3.41756e-4	0.0744387	0.00519796
chrX	71300674	71300768	18730903	0	+	0.510638	(0.49,0.53]	chrX	1598445	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	35	93	2	1.17745	1.370435	1.56342	0.0347802	0.00474166	0.144346	0.0361423
chr19	806407	806481	17189531	0	+	0.783784	(0.59,1]	chr19	1411037	1	CDS	CDS:UTR3:EXON_MRNA:INTRON	PTBP1	ENSG00000011304.22	ENST00000635647.1:ENST00000627714.2:ENST00000676227.1:ENST00000677277.1:ENST00000349038.8:ENST00000586944.5:ENST00000356948.11:ENST00000394601.8:ENST00000587191.3:ENST00000679114.1:ENST00000350092.8:ENST00000585535.2:ENST00000621737.4:ENST00000585956.5:ENST00000587136.1:ENST00000585932.5:ENST00000589883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	153	2	1.17368	1.36694	1.5602	0.035443	0.0131527	0.146776	0.0737669
chr11	61801018	61801117	12405911	0	-	0.30303	(0.29,0.33]	chr11	960580	15	UTR3	UTR3:EXON_MRNA	FADS1	ENSG00000149485.19	ENST00000350997.12	protein_coding	protein_coding	protein_coding	protein_coding	57	91	2	1.19603	1.36628	1.53653	0.0284228	0.00298218	0.125179	0.0265243
chr11	65442961	65443061	11984773	0	+	0.35	(0.33,0.36]	chr11	920390	190	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	33	61	2	1.14892	1.3658199999999998	1.58272	0.0320588	0.0107082	0.133457	0.064368
chr22	21763741	21763841	18442388	0	-	0.45	(0.42,0.455]	chr22	1572508	42	UTR3	UTR3:EXON_MRNA	MAPK1	ENSG00000100030.15	ENST00000215832.11	protein_coding	protein_coding	protein_coding	protein_coding	73	168	2	1.06182	1.365785	1.66975	0.0248822	0.00131789	0.113904	0.0143836
chr1	162523248	162523347	507495	0	+	0.323232	(0.29,0.33]	chr1	54762	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	26	44	2	1.31567	1.3641	1.41253	0.0329205	0.0204202	0.138402	0.0990979
chr21	8400759	8400859	18041538	0	+	0.56	(0.53,0.59]	chr21	1530863	51	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	4614	13779	2	1.23709	1.363575	1.49006	0.00456145	8.91234e-4	0.0348679	0.010856
chr9	37136336	37136436	10253003	0	+	0.37	(0.36,0.39]	chr9	771594	90	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	31	2	1.26832	1.362705	1.45709	0.0551667	0.0417071	0.190574	0.165482
chr8	23566107	23566186	9230654	0	+	0.481013	(0.455,0.49]	chr8	706546	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1:ENST00000523883.5:ENST00000517923.1:ENST00000520949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	77	2	1.32152	1.36216	1.4028	0.0184277	0.0156253	0.0931026	0.0844863
chr21	8401759	8401859	18041548	0	+	0.79	(0.59,1]	chr21	1530863	61	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	6787	34911	2	1.34983	1.361555	1.37328	0.00496333	0.00492979	0.0379087	0.0368546
chr16	85804977	85805077	15798354	0	+	0.61	(0.59,1]	chr16	1257147	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA	COX4I1	ENSG00000131143.10	ENST00000565078.5:ENST00000570123.5:ENST00000568339.5:ENST00000566115.5:ENST00000567241.5:ENST00000568794.5:ENST00000562336.5:ENST00000253452.8:ENST00000563774.1:ENST00000561569.5:ENST00000567266.5:ENST00000566405.5:ENST00000564544.1:ENST00000566617.1:ENST00000564903.1:ENST00000564648.1:ENST00000569997.1:ENST00000562929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	115	2	1.31781	1.361145	1.40448	0.0328285	0.0248261	0.136448	0.115846
chr6	67884475	67884575	7784105	0	-	0.37	(0.36,0.39]	chr6	596226	2	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	90	176	2	1.08858	1.357375	1.62617	0.0194886	0.00137345	0.0976323	0.0148494
chr7	121296745	121296845	8496837	0	+	0.29	[0,0.29]	chr7	648451	12	UTR3	UTR3:EXON_MRNA	CPED1	ENSG00000106034.18	ENST00000310396.10	protein_coding	protein_coding	protein_coding	protein_coding	28	44	2	1.11795	1.357175	1.5964	0.0415986	0.0202732	0.157268	0.0981442
chr5	171392767	171392825	6384240	0	+	0.534483	(0.53,0.59]	chr5	495808	2	CDS	CDS:UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	47	138	2	1.2627	1.356555	1.45041	0.0142495	0.00795893	0.0779521	0.0525845
chr1	108638328	108638428	394967	0	+	0.3	(0.29,0.33]	chr1	38052	33	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	20	34	2	1.08586	1.356025	1.62619	0.0583427	0.0358231	0.199993	0.147298
chr2	70089008	70089105	1878491	0	+	0.28866000000000003	[0,0.29]	chr2	177398	3	UTR3	UTR3:EXON_MRNA	PCBP1	ENSG00000169564.7	ENST00000303577.7	protein_coding	protein_coding	protein_coding	protein_coding	116	183	2	1.31495	1.35601	1.39707	0.00810886	0.00327901	0.0533422	0.0274562
chr2	231708706	231708751	2426249	0	+	0.555556	(0.53,0.59]	chr2	218655	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTMA	ENSG00000187514.17	ENST00000466801.5:ENST00000448874.5:ENST00000409321.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000468027.5:ENST00000409683.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	29	86	2	1.15085	1.35585	1.56085	0.0377096	0.00855199	0.153871	0.0551341
chr1	244854449	244854503	1591278	0	-	0.425926	(0.42,0.455]	chr1	158389	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1:ENST00000444376.7:ENST00000640218.2:ENST00000440865.2:ENST00000639628.1:ENST00000638952.1:ENST00000638716.1:ENST00000366525.8:ENST00000639880.1:ENST00000283179.14:ENST00000638475.1:ENST00000639824.1:ENST00000468690.2:ENST00000476241.2:ENST00000640001.1:ENST00000640056.1:ENST00000639064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	23	57	2	1.25864	1.3546399999999998	1.45064	0.0517151	0.0128691	0.193577	0.0725185
chr15	34979605	34979702	15207818	0	-	0.463918	(0.455,0.49]	chr15	1197458	14	UTR3	UTR3:EXON_MRNA	ZNF770	ENSG00000198146.4	ENST00000356321.4	protein_coding	protein_coding	protein_coding	protein_coding	19	46	2	1.33383	1.35296	1.37209	0.0392563	0.0284589	0.159739	0.125337
chr1	47376844	47376944	182633	0	+	0.31	(0.29,0.33]	chr1	23843	2	UTR3	UTR3:EXON_MRNA	CMPK1	ENSG00000162368.14	ENST00000371873.10:ENST00000371871.8:ENST00000450808.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	38	64	2	1.16115	1.3516	1.54205	0.0377327	0.00666732	0.153959	0.0463685
chr9	112219001	112219100	10802872	0	-	0.40404	(0.39,0.42]	chr9	818409	14	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	20	44	2	1.205	1.3513350000000002	1.49767	0.0425446	0.0278687	0.160464	0.125776
chr5	134927051	134927149	6846864	0	-	0.520408	(0.49,0.53]	chr5	523926	5	EXON_PSEUDO	EXON_PSEUDO	MTND4P12	ENSG00000247627.2	ENST00000498999.2	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	150	376	2	1.26771	1.350305	1.4329	0.00591895	0.00251315	0.0428233	0.0226462
chr1	634426	634525	511	0	+	0.545455	(0.53,0.59]	chr1	108	10	EXON_PSEUDO	EXON_PSEUDO	MTCO3P12	ENSG00000198744.5	ENST00000416718.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	48	142	2	1.03339	1.348135	1.66288	0.0396922	0.00226025	0.161375	0.0208968
chr22	41906144	41906241	18383953	0	+	0.536082	(0.53,0.59]	chr22	1565112	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5:ENST00000491541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	25	73	2	1.23864	1.34803	1.45742	0.0267274	0.0229819	0.118593	0.108784
chr21	8216499	8216598	18041183	0	+	0.666667	(0.59,1]	chr21	1530814	39	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	10089	51681	2	1.09573	1.34695	1.59817	0.0171863	0.00147744	0.0907797	0.0158052
chr6	67888350	67888449	7784144	0	-	0.393939	(0.39,0.42]	chr6	596229	15	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	103	226	2	1.14223	1.34485	1.54747	0.0154531	0.00152695	0.0835467	0.0154916
chrX	24065997	24066092	18616568	0	+	0.389474	(0.36,0.39]	chrX	1589818	1	CDS	CDS:EXON_MRNA	EIF2S3	ENSG00000130741.11	ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding	34	72	2	1.1622	1.34259	1.52298	0.0456738	0.0059411	0.17597	0.0428562
chr6	49605658	49605755	7729596	0	-	0.42268	(0.42,0.455]	chr6	592928	6	UTR3	UTR3:EXON_MRNA	RHAG	ENSG00000112077.17	ENST00000371175.10:ENST00000646272.1:ENST00000646939.1:ENST00000618248.3:ENST00000229810.9	protein_coding	protein_coding	protein_coding	protein_coding	15	36	2	1.34146	1.34251	1.34356	0.053512	0.0417793	0.197317	0.157819
chr19	28613933	28614032	17280934	0	+	0.515152	(0.49,0.53]	chr19	1428124	16	EXON_LNCRNA	EXON_LNCRNA	AC079466.1	ENSG00000266976.3	ENST00000587961.1	lncRNA	lncRNA	lncRNA	lncRNA	40	101	2	1.02575	1.341555	1.65736	0.0463741	0.00311451	0.170294	0.0274767
chr1	629923	630018	471	0	+	0.442105	(0.42,0.455]	chr1	105	4	EXON_PSEUDO	EXON_PSEUDO	MTND2P28	ENSG00000225630.1	ENST00000457540.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	70	160	2	1.07071	1.33854	1.60637	0.0263498	0.00171461	0.117164	0.0177189
chr6	67885073	67885172	7784111	0	-	0.424242	(0.42,0.455]	chr6	596226	8	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	76	168	2	0.952995	1.3384125	1.72383	0.0373919	0.00110059	0.146704	0.0126979
chr6	31669926	31670000	7116089	0	+	0.5	(0.49,0.53]	chr6	545976	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CSNK2B:XXbac-BPG32J3.22	ENSG00000204435.15:ENSG00000263020.6	ENST00000677388.1:ENST00000677536.1:ENST00000677758.1:ENST00000375885.8:ENST00000375882.7:ENST00000468255.5:ENST00000475875.2:ENST00000375880.6:ENST00000375865.6:ENST00000375866.2:ENST00000617558.2:ENST00000409691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	30	76	2	1.28985	1.33788	1.38591	0.0278438	0.0134038	0.123353	0.0747342
chr5	154816532	154816630	6315036	0	+	0.27551	[0,0.29]	chr5	492515	26	UTR3	UTR3:EXON_MRNA	LARP1	ENSG00000155506.18	ENST00000336314.9:ENST00000518297.6	protein_coding	protein_coding	protein_coding	protein_coding	80	122	2	1.26213	1.33648	1.41083	0.0135998	0.00473047	0.0757844	0.0360998
chr1	93362429	93362529	356125	0	+	0.3	(0.29,0.33]	chr1	35144	19	UTR3	UTR3:EXON_MRNA	DR1	ENSG00000117505.13	ENST00000370272.9	protein_coding	protein_coding	protein_coding	protein_coding	18	31	2	1.29149	1.336185	1.38088	0.0529272	0.0411794	0.195536	0.155744
chr6	119179527	119179624	7919324	0	-	0.309278	(0.29,0.33]	chr6	606471	25	UTR3	UTR3:EXON_MRNA	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	18	31	2	1.29149	1.336185	1.38088	0.0529272	0.0411794	0.195536	0.155744
chr6	67883876	67883976	7784099	0	-	0.45	(0.42,0.455]	chr6	596224	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	78	183	2	1.17904	1.33533	1.49162	0.0158511	0.00277709	0.0853669	0.0241009
chr3	98580396	98580491	4319541	0	-	0.294737	(0.29,0.33]	chr3	360252	11	UTR3	UTR3:EXON_MRNA:INTRON	RP11-227H4.8:CPOX	ENSG00000285635.1:ENSG00000080819.9	ENST00000512905.6:ENST00000647941.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	24	42	2	1.31574	1.33506	1.35438	0.0496396	0.0210851	0.186234	0.101995
chr12	122768149	122768200	13125255	0	+	0.372549	(0.36,0.39]	chr12	1025360	2	EXON_SMALL	EXON_SMALL:INTRON	DENR:Y_RNA	ENSG00000139726.11:ENSG00000206914.1	ENST00000280557.11:ENST00000455982.2:ENST00000384187.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	20	40	2	1.30989	1.33229	1.35469	0.0367882	0.0366994	0.150668	0.145024
chr12	54283885	54283967	12891466	0	+	0.512195	(0.49,0.53]	chr12	1002940	1	CDS_START	CDS_START:CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000679273.1:ENST00000678448.1:ENST00000677636.1:ENST00000678876.1:ENST00000677945.1:ENST00000678934.1:ENST00000678597.1:ENST00000678873.1:ENST00000677778.1:ENST00000677191.1:ENST00000678456.1:ENST00000676572.1:ENST00000679344.1:ENST00000678212.1:ENST00000677224.1:ENST00000677279.1:ENST00000678513.1:ENST00000676707.1:ENST00000679063.1:ENST00000678279.1:ENST00000677539.1:ENST00000679079.1:ENST00000678970.1:ENST00000676886.1:ENST00000678412.1:ENST00000676472.1:ENST00000678611.1:ENST00000676951.1:ENST00000676853.1:ENST00000678424.1:ENST00000678581.1:ENST00000551679.1:ENST00000677840.1:ENST00000679026.1:ENST00000677518.1:ENST00000677847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	91	217	2	0.94759	1.3317700000000001	1.71595	0.0351526	8.9325e-4	0.141924	0.01086
chr10	78035580	78035650	11140869	0	+	0.428571	(0.42,0.455]	chr10	847076	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	RPS24	ENSG00000138326.21	ENST00000613865.5:ENST00000435275.5:ENST00000645440.1:ENST00000440692.6:ENST00000360830.9:ENST00000372360.9:ENST00000464716.6:ENST00000485708.7:ENST00000478655.6:ENST00000645698.1:ENST00000476545.6:ENST00000466129.6:ENST00000465692.2:ENST00000475468.6:ENST00000482069.5:ENST00000646254.1:ENST00000645195.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	85	211	2	0.919944	1.3317269999999999	1.74351	0.0477374	5.00148e-4	0.179958	0.00652699
chr7	5530233	5530328	8659510	0	-	0.768421	(0.59,1]	chr7	662132	1	SS5_PROX	SS5_PROX:INTRON	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000646664.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6:ENST00000432588.6:ENST00000645576.1:ENST00000647275.1:ENST00000484841.6:ENST00000645025.1:ENST00000480301.1:ENST00000443528.5:ENST00000414620.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	209	2	1.20817	1.331335	1.4545	0.047602	0.00843676	0.173991	0.0546021
chr12	76053769	76053839	13423923	0	-	0.428571	(0.42,0.455]	chr12	1056628	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000552147.5:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000547993.5:ENST00000552342.5:ENST00000547529.6:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	43	104	2	1.23514	1.329175	1.42321	0.0290083	0.00627125	0.129773	0.0445933
chr19	8463601	8463686	17220595	0	+	0.423529	(0.42,0.455]	chr19	1417637	1	CDS	CDS:UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5:ENST00000593293.1:ENST00000598367.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	16	38	2	1.31144	1.32645	1.34146	0.053512	0.0403077	0.197317	0.153343
chrX	73850824	73850924	19113783	0	-	0.52	(0.49,0.53]	chrX	1626144	135	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	XIST	ENSG00000229807.13	ENST00000650627.1:ENST00000434839.3:ENST00000429829.6:ENST00000650637.1:ENST00000648970.1	lncRNA	lncRNA	lncRNA	lncRNA	20	49	2	1.14972	1.32408	1.49844	0.0476486	0.0290492	0.17993	0.127648
chr10	100364626	100364726	11219506	0	+	0.4	(0.39,0.42]	chr10	853930	38	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	38	84	2	1.13925	1.32224	1.50523	0.0391149	0.00599492	0.159192	0.042887
chr6	31829776	31829876	7116705	0	+	0.67	(0.59,1]	chr6	546210	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSPA1B:XXbac-BPG254B15.11	ENSG00000204388.7:ENSG00000285565.1	ENST00000375650.5:ENST00000649802.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	24	120	2	1.10549	1.32166	1.53783	0.0545445	0.0168564	0.188769	0.0889012
chr7	107160163	107160260	8455220	0	+	0.319588	(0.29,0.33]	chr7	645853	7	UTR3	UTR3:EXON_MRNA	PRKAR2B	ENSG00000005249.13	ENST00000265717.5	protein_coding	protein_coding	protein_coding	protein_coding	30	52	2	1.25092	1.3213599999999999	1.3918	0.0454393	0.0138105	0.175254	0.0758122
chr6	149725985	149726083	8018872	0	-	0.397959	(0.39,0.42]	chr6	612716	18	UTR3	UTR3:EXON_MRNA	NUP43	ENSG00000120253.14	ENST00000340413.7	protein_coding	protein_coding	protein_coding	protein_coding	18	39	2	1.2294	1.320885	1.41237	0.0477936	0.0377681	0.174677	0.154092
chr1	630303	630398	475	0	+	0.505263	(0.49,0.53]	chr1	105	8	EXON_PSEUDO	EXON_PSEUDO	MTND2P28	ENSG00000225630.1	ENST00000457540.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	83	196	2	0.998517	1.3205485	1.64258	0.0290804	0.00165211	0.129773	0.0163614
chr5	179614650	179614745	7002055	0	-	0.347368	(0.33,0.36]	chr5	536242	6	UTR3	UTR3:EXON_MRNA	HNRNPH1	ENSG00000169045.17	ENST00000393432.8:ENST00000356731.9:ENST00000442819.6:ENST00000502904.5:ENST00000514332.5:ENST00000515481.5:ENST00000510411.5:ENST00000510678.5:ENST00000329433.10:ENST00000523449.5:ENST00000524179.1:ENST00000519033.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	53	2	1.21823	1.31996	1.42169	0.0285965	0.0241689	0.125893	0.113671
chr6	26138149	26138246	7101272	0	+	0.329897	(0.29,0.33]	chr6	542801	2	UTR3	UTR3:EXON_MRNA	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	33	53	2	0.99015	1.317995	1.64584	0.0554441	0.0122524	0.191319	0.0705132
chrM	7781	7878	19377215	0	+	0.536082	(0.53,0.59]	chrM	1649808	2	CDS	CDS:EXON_MRNA	MT-CO2	ENSG00000198712.1	ENST00000361739.1	protein_coding	protein_coding	protein_coding	protein_coding	347	982	2	1.10329	1.3174700000000001	1.53165	0.0117833	9.8039e-4	0.0686664	0.0109621
chr21	8445957	8446056	18042004	0	+	0.818182	(0.59,1]	chr21	1530902	61	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	11284	56171	2	1.25134	1.316185	1.38103	0.00815783	0.00472352	0.0531101	0.0365386
chr2	169811182	169811252	2197820	0	+	0.428571	(0.42,0.455]	chr2	201136	1	CDS	CDS:EXON_MRNA	SSB	ENSG00000138385.16	ENST00000260956.9:ENST00000409333.1	protein_coding	protein_coding	protein_coding	protein_coding	24	55	2	1.19385	1.3158850000000002	1.43792	0.0438207	0.0181936	0.163572	0.0925808
chr1	145992717	145992811	1270238	0	-	0.489362	(0.455,0.49]	chr1	125527	4	UTR3	UTR3:EXON_MRNA	TXNIP	ENSG00000265972.6	ENST00000582401.6	protein_coding	protein_coding	protein_coding	protein_coding	96	219	2	1.24805	1.312815	1.37758	0.0087214	0.00483385	0.0561091	0.0372624
chrM	10144	10231	19377241	0	+	0.494253	(0.49,0.53]	chrM	1649820	2	CDS	CDS:EXON_MRNA	MT-ND3	ENSG00000198840.2	ENST00000361227.2	protein_coding	protein_coding	protein_coding	protein_coding	105	256	2	1.30342	1.3095400000000001	1.31566	0.00740771	0.00534829	0.0492519	0.0406564
chr1	633633	633732	503	0	+	0.393939	(0.39,0.42]	chr1	108	2	EXON_PSEUDO	EXON_PSEUDO	MTATP8P1:MTATP6P1	ENSG00000240409.1:ENSG00000248527.1	ENST00000467115.1:ENST00000514057.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	78	149	2	0.942924	1.307982	1.67304	0.0382755	0.00179055	0.156016	0.0173863
chr2	32916479	32916579	1717982	0	+	0.98	(0.59,1]	chr2	168603	130	INTRON	INTRON	LINC00486	ENSG00000230876.8	ENST00000414054.5:ENST00000435075.1	lncRNA	lncRNA	lncRNA	lncRNA	123	647	2	1.05832	1.307435	1.55655	0.0317136	0.0029108	0.132631	0.0259182
chr7	26192028	26192127	8734044	0	-	0.30303	(0.29,0.33]	chr7	666648	25	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNRNPA2B1	ENSG00000122566.22	ENST00000679318.1:ENST00000677339.1:ENST00000678501.1:ENST00000676903.1:ENST00000608362.2:ENST00000677631.1:ENST00000676749.1:ENST00000677574.1:ENST00000679123.1:ENST00000677906.1:ENST00000476233.2:ENST00000677669.1:ENST00000677321.1:ENST00000678277.1:ENST00000677571.1:ENST00000679124.1:ENST00000676932.1:ENST00000678973.1:ENST00000678183.1:ENST00000679021.1:ENST00000678035.1:ENST00000677075.1:ENST00000678075.1:ENST00000678631.1:ENST00000678998.1:ENST00000490912.6:ENST00000354667.8:ENST00000618183.5:ENST00000677839.1:ENST00000677037.1:ENST00000678449.1:ENST00000679001.1:ENST00000678962.1:ENST00000676524.1:ENST00000678935.1:ENST00000678675.1:ENST00000676746.1:ENST00000356674.8:ENST00000678431.1:ENST00000678697.1:ENST00000678779.1:ENST00000676497.1:ENST00000677396.1:ENST00000360787.8:ENST00000679243.1:ENST00000677656.1:ENST00000463181.5:ENST00000678884.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	102	162	2	1.29807	1.306805	1.31554	0.0073112	0.00705784	0.0490627	0.047732
chrM	4942	5037	19377189	0	+	0.410526	(0.39,0.42]	chrM	1649802	6	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	212	420	2	0.932927	1.3060185	1.67911	0.0280309	4.42236e-4	0.126489	0.00595638
chr15	40036148	40036240	15230344	0	-	0.326087	(0.29,0.33]	chr15	1198267	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRP14	ENSG00000140319.11	ENST00000267884.11:ENST00000558527.5:ENST00000558720.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	53	86	2	1.26248	1.3048199999999999	1.34716	0.0189919	0.0100444	0.0937467	0.0623676
chr10	100362330	100362430	11219483	0	+	0.42	(0.39,0.42]	chr10	853930	15	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	60	126	2	1.28479	1.3042	1.32361	0.0107877	0.0107177	0.0652091	0.064368
chr19	3979893	3979979	17430213	0	-	0.593023	(0.59,1]	chr19	1454706	2	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	51	246	2	1.11744	1.303825	1.49021	0.0304418	0.0100582	0.130016	0.0623891
chr6	67882579	67882679	7784086	0	-	0.51	(0.49,0.53]	chr6	596223	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	114	273	2	1.08474	1.30088	1.51702	0.0174065	0.00204138	0.0918926	0.0200342
chr1	32680080	32680169	130415	0	+	0.325843	(0.29,0.33]	chr1	16120	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBBP4	ENSG00000162521.19	ENST00000373493.10:ENST00000492348.6:ENST00000373485.5:ENST00000460669.5:ENST00000482190.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	63	100	2	1.07965	1.300615	1.52158	0.0269876	0.00493655	0.119715	0.0379239
chrX	71300110	71300204	18730897	0	+	0.43617	(0.42,0.455]	chrX	1598445	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	NONO	ENSG00000147140.17	ENST00000677446.1:ENST00000677274.1:ENST00000535149.5:ENST00000420903.6:ENST00000678335.1:ENST00000678830.1:ENST00000677826.1:ENST00000473525.2:ENST00000678437.1:ENST00000676499.1:ENST00000676495.1:ENST00000678323.1:ENST00000677766.1:ENST00000679267.1:ENST00000677879.1:ENST00000677245.1:ENST00000373841.5:ENST00000276079.13:ENST00000679029.1:ENST00000677218.1:ENST00000676797.1:ENST00000678660.1:ENST00000677014.1:ENST00000678231.1:ENST00000474431.5:ENST00000677612.1:ENST00000677977.1:ENST00000472185.1:ENST00000490044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	50	2	1.20916	1.29992	1.39068	0.0456089	0.0249398	0.168044	0.116361
chr17	72663987	72664069	16669450	0	-	0.585366	(0.53,0.59]	chr17	1371730	3	EXON_SMALL	EXON_SMALL:INTRON	SLC39A11:RN7SKP180	ENSG00000133195.11:ENSG00000200783.1	ENST00000255559.7:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5:ENST00000363913.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:processed_transcript	85	247	2	1.17198	1.2981150000000001	1.42425	0.0192472	0.0033786	0.0943643	0.0281893
chr6	85611408	85611507	7825762	0	-	0.363636	(0.36,0.39]	chr6	599558	38	UTR3	UTR3:EXON_MRNA:INTRON	RP11-321N4.5:SYNCRIP	ENSG00000271793.2:ENSG00000135316.19	ENST00000682083.1:ENST00000683074.1:ENST00000681965.1:ENST00000682504.1:ENST00000682106.1:ENST00000683364.1:ENST00000683436.1:ENST00000684220.1:ENST00000683909.1:ENST00000684462.1:ENST00000503906.1:ENST00000616122.5:ENST00000678528.1:ENST00000676637.1:ENST00000677771.1:ENST00000355238.11:ENST00000678878.1:ENST00000677481.1:ENST00000677646.1:ENST00000676630.1:ENST00000678618.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	22	40	2	1.22524	1.2966250000000001	1.36801	0.0471244	0.0361792	0.172305	0.148525
chr15	90920985	90921085	15103774	0	+	0.44	(0.42,0.455]	chr15	1188782	13	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MAN2A2	ENSG00000196547.15	ENST00000560451.5:ENST00000558161.5:ENST00000559717.6:ENST00000360468.7:ENST00000559704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	41	2	1.14232	1.2960500000000001	1.44978	0.0524422	0.0463803	0.18423900000000001	0.177188
chr1	52772193	52772284	1020665	0	-	0.472527	(0.455,0.49]	chr1	105869	1	EXON_PSEUDO	EXON_PSEUDO	RPS13P2	ENSG00000228929.1	ENST00000437890.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	60	138	2	1.24342	1.295055	1.34669	0.0162996	0.0073471	0.0867818	0.0491503
chrM	5037	5132	19377190	0	+	0.315789	(0.29,0.33]	chrM	1649802	7	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	273	404	2	1.02273	1.294375	1.56602	0.0186937	7.77008e-4	0.0934721	0.0092634
chr3	184026566	184026665	4622772	0	-	0.424242	(0.42,0.455]	chr3	381686	3	EXON_PSEUDO	EXON_PSEUDO	EEF1A1P8	ENSG00000223529.1	ENST00000419025.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	19	44	2	1.24361	1.292535	1.34146	0.053512	0.0365895	0.197317	0.145024
chr12	64418948	64419021	12921804	0	+	0.424658	(0.42,0.455]	chr12	1007018	2	CDS	CDS:EXON_MRNA	XPOT	ENSG00000184575.12	ENST00000332707.10:ENST00000400935.2	protein_coding	protein_coding	protein_coding	protein_coding	24	54	2	1.13258	1.29055	1.44852	0.0500956	0.0197601	0.1801	0.096054
chr6	67881779	67881879	7784077	0	-	0.39	(0.36,0.39]	chr6	596221	2	SS3_PROX	SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1	lncRNA	lncRNA	lncRNA	lncRNA	111	205	2	0.83418	1.290335	1.74649	0.0545675	4.50003e-4	0.188847	0.00640632
chr15	30254454	30254508	15187288	0	-	0.425926	(0.42,0.455]	chr15	1195313	2	EXON_SMALL	EXON_SMALL	RNU6-17P	ENSG00000206972.1	ENST00000384245.1	snRNA	snRNA	snRNA	snRNA	39	93	2	1.17109	1.2901850000000001	1.40928	0.0429032	0.00737786	0.168598	0.0492519
chr16	30065843	30065927	15628381	0	+	0.714286	(0.59,1]	chr16	1239763	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	CTD-2515O10.6:ALDOA	ENSG00000285043.3:ENSG00000149925.22	ENST00000395248.6:ENST00000566897.6:ENST00000568435.6:ENST00000338110.11:ENST00000562168.5:ENST00000569545.5:ENST00000563060.6:ENST00000564521.6:ENST00000412304.6:ENST00000563987.5:ENST00000642816.3:ENST00000643777.4:ENST00000567555.1:ENST00000569798.5:ENST00000395240.7:ENST00000566012.1:ENST00000566846.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	128	622	2	1.27433	1.2885900000000001	1.30285	0.0114245	0.0106566	0.067466	0.0648451
chr11	65424716	65424815	11984590	0	+	0.383838	(0.36,0.39]	chr11	920390	7	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	66	125	2	0.930611	1.2881905	1.64577	0.0500385	0.00176555	0.187717	0.0172332
chr19	58544484	58544575	17413281	0	+	0.703297	(0.59,1]	chr19	1451170	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM28	ENSG00000130726.12	ENST00000253024.10:ENST00000593582.5:ENST00000594806.5:ENST00000341753.10	protein_coding	protein_coding	protein_coding	protein_coding	34	167	2	1.03569	1.287865	1.54004	0.0556795	0.0103732	0.191615	0.063428
chr19	54201486	54201547	17390396	0	+	0.540984	(0.53,0.59]	chr19	1447206	1	CDS	CDS:EXON_MRNA	RPS9	ENSG00000170889.14	ENST00000484121.5:ENST00000448962.5:ENST00000302907.9:ENST00000626547.2:ENST00000436445.5:ENST00000391752.5:ENST00000402367.5:ENST00000445961.5:ENST00000391751.7:ENST00000495002.5:ENST00000391753.6:ENST00000441429.1:ENST00000460761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	56	150	2	1.10932	1.28763	1.46594	0.0210698	0.0107977	0.101924	0.064368
chr3	125517032	125517086	3716226	0	+	0.425926	(0.42,0.455]	chr3	317529	2	EXON_SMALL	EXON_SMALL	Y_RNA	ENSG00000201800.1	ENST00000364930.1	misc_RNA	misc_RNA	misc_RNA	misc_RNA	191	422	2	1.14835	1.28668	1.42501	0.0101275	0.00222966	0.0626311	0.0206309
chr7	151466749	151466841	9130998	0	-	0.26087	[0,0.29]	chr7	698090	9	UTR3	UTR3:EXON_MRNA	RHEB	ENSG00000106615.10	ENST00000262187.10	protein_coding	protein_coding	protein_coding	protein_coding	22	34	2	1.15109	1.28656	1.42203	0.0514084	0.0473066	0.192759	0.172928
chr1	26731332	26731422	110496	0	+	0.633333	(0.59,1]	chr1	13259	3	CDS	CDS:EXON_MRNA	ARID1A	ENSG00000117713.20	ENST00000430799.7:ENST00000324856.13:ENST00000637465.1:ENST00000457599.6:ENST00000374152.7:ENST00000615191.4:ENST00000636219.1	protein_coding	protein_coding	protein_coding	protein_coding	21	103	2	1.14212	1.285825	1.42953	0.0547055	0.0283552	0.189303	0.127654
chr6	43785899	43785997	7159940	0	+	0.377551	(0.36,0.39]	chr6	553452	14	UTR3	UTR3:EXON_MRNA	VEGFA	ENSG00000112715.25	ENST00000372067.8:ENST00000672860.2:ENST00000372064.9:ENST00000372077.8:ENST00000480614.1:ENST00000497139.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	45	92	2	1.14572	1.2852800000000002	1.42484	0.0402806	0.00623328	0.163285	0.0443532
chr21	8400659	8400759	18041537	0	+	0.48	(0.455,0.49]	chr21	1530863	50	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	2785	6150	2	1.25589	1.28507	1.31425	0.00364157	0.00230047	0.0298599	0.0218402
chr6	16147848	16147948	7067257	0	+	0.47	(0.455,0.49]	chr6	540868	12	UTR3	UTR3:EXON_MRNA	MYLIP	ENSG00000007944.15	ENST00000356840.8:ENST00000349606.4	protein_coding	protein_coding	protein_coding	protein_coding	24	55	2	1.19699	1.28355	1.37011	0.0452613	0.0225388	0.174787	0.10505
chr11	65425115	65425214	11984594	0	+	0.353535	(0.33,0.36]	chr11	920390	11	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	85	151	2	1.123	1.28156	1.44012	0.0215103	0.00351912	0.103292	0.0289914
chr1	17408700	17408797	874017	0	-	0.391753	(0.39,0.42]	chr1	89600	21	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RCC2	ENSG00000179051.14	ENST00000375436.9:ENST00000474892.1:ENST00000375433.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	54	110	2	1.25952	1.2774	1.29528	0.0148493	0.0124219	0.0807598	0.0708755
chr8	23570440	23570538	9230701	0	+	0.316327	(0.29,0.33]	chr8	706554	16	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000523930.1:ENST00000523883.5:ENST00000522164.5:ENST00000521637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	36	58	2	1.20328	1.27657	1.34986	0.0261289	0.0243166	0.117079	0.114327
chr6	67881979	67882079	7784079	0	-	0.46	(0.455,0.49]	chr6	596221	4	SS3_PROX	SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1	lncRNA	lncRNA	lncRNA	lncRNA	225	484	2	0.944874	1.275197	1.60552	0.0265711	6.43934e-4	0.118018	0.00851592
chr2	96876078	96876176	2792352	0	-	0.704082	(0.59,1]	chr2	249281	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	FAM178B	ENSG00000168754.15	ENST00000393526.6:ENST00000490605.3:ENST00000470789.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	62	300	2	1.23378	1.2713700000000001	1.30896	0.0240085	0.0123483	0.112954	0.0708572
chr14	32203162	32203215	14571498	0	-	0.509434	(0.49,0.53]	chr14	1141816	1	EXON_SMALL	EXON_SMALL	RNU6-8	ENSG00000202337.1	ENST00000365467.1	snRNA	snRNA	snRNA	snRNA	72	179	2	1.03919	1.2708949999999999	1.5026	0.033427	0.00261677	0.140268	0.023095
chr21	8433570	8433670	18041879	0	+	0.75	(0.59,1]	chr21	1530900	5	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	500	2799	2	0.918821	1.2706905	1.62256	0.0430033	0.00141973	0.161091	0.0152795
chr5	163444640	163444734	6343438	0	+	0.37234	(0.36,0.39]	chr5	494014	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000393929.5:ENST00000340828.7:ENST00000509143.1:ENST00000509425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	38	75	2	1.19605	1.27057	1.34509	0.0376309	0.011929500000000001	0.153553	0.0698343
chrX	24077170	24077267	18616684	0	+	0.505155	(0.49,0.53]	chrX	1589843	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	69	157	2	0.970643	1.2700465	1.56945	0.035453	0.00370602	0.142962	0.031038
chrM	5132	5226	19377191	0	+	0.5	(0.49,0.53]	chrM	1649802	8	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	143	330	2	1.00323	1.2698450000000001	1.53646	0.0228679	0.00159662	0.108264	0.0159416
chr16	2769092	2769188	15494968	0	+	0.53125	(0.53,0.59]	chr16	1227809	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000301740.13:ENST00000630499.2:ENST00000574593.1:ENST00000572883.1:ENST00000573311.1:ENST00000571041.1:ENST00000570705.1:ENST00000576878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	62	171	2	1.18677	1.26843	1.35009	0.0163938	0.0093129	0.0869886	0.0586162
chrX	78126127	78126226	18747153	0	+	0.343434	(0.33,0.36]	chrX	1599855	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000373316.5:ENST00000476531.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	79	145	2	1.1387	1.26768	1.39666	0.0248769	0.00415592	0.116078	0.0326516
chr17	47680507	47680569	16251966	0	+	0.419355	(0.39,0.42]	chr17	1316755	1	CDS	CDS:EXON_MRNA	KPNB1	ENSG00000108424.11	ENST00000535458.6:ENST00000583648.6:ENST00000290158.9:ENST00000540627.5:ENST00000582097.5:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	24	51	2	1.21342	1.2675649999999998	1.32171	0.0510794	0.0301707	0.191563	0.130016
chr10	100361731	100361831	11219477	0	+	0.32	(0.29,0.33]	chr10	853930	9	UTR3	UTR3:EXON_MRNA	SCD	ENSG00000099194.6	ENST00000370355.3	protein_coding	protein_coding	protein_coding	protein_coding	59	97	2	1.12199	1.26721	1.41243	0.0335642	0.0058087	0.140734	0.0420219
chr1	22092710	22092809	93091	0	+	0.272727	[0,0.29]	chr1	10799	13	UTR3	UTR3:EXON_MRNA	CDC42	ENSG00000070831.17	ENST00000648594.1:ENST00000400259.5:ENST00000344548.7:ENST00000656825.1	protein_coding	protein_coding	protein_coding	protein_coding	35	51	2	1.01469	1.264485	1.51428	0.0513573	0.0187098	0.183166	0.0934721
chr14	23325582	23325681	14176991	0	+	0.555556	(0.53,0.59]	chr14	1110721	4	UTR3	UTR3:EXON_MRNA	BCL2L2-PABPN1:PABPN1	ENSG00000258643.6:ENSG00000100836.11	ENST00000678502.1:ENST00000216727.9:ENST00000397276.6	protein_coding	protein_coding	protein_coding	protein_coding	32	90	2	1.13306	1.262495	1.39193	0.0428448	0.0128909	0.168381	0.0725185
chr14	102086985	102087044	14792192	0	-	0.610169	(0.59,1]	chr14	1159098	1	UTR5	UTR5:EXON_MRNA:INTRON	HSP90AA1	ENSG00000080824.19	ENST00000216281.13:ENST00000334701.11:ENST00000553585.5:ENST00000556554.1:ENST00000557234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	154	2	1.13534	1.2618200000000002	1.3883	0.0524072	0.0162185	0.18423900000000001	0.0863877
chr6	73517710	73517809	7796065	0	-	0.383838	(0.36,0.39]	chr6	597132	21	UTR3	UTR3:EXON_MRNA:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678508.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000679031.1:ENST00000495333.6:ENST00000678703.1:ENST00000678041.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	411	781	2	1.14868	1.2613699999999999	1.37406	0.00829369	0.00204361	0.0543543	0.0192926
chr1	33009034	33009134	924411	0	-	0.48	(0.455,0.49]	chr1	97512	12	UTR3	UTR3:EXON_MRNA	AK2	ENSG00000004455.17	ENST00000629371.2:ENST00000373449.7:ENST00000672715.1:ENST00000354858.11	protein_coding	protein_coding	protein_coding	protein_coding	20	45	2	1.18542	1.259625	1.33383	0.0497596	0.0392563	0.179045	0.159739
chr17	76564378	76564475	16359193	0	+	0.43299	(0.42,0.455]	chr17	1328581	14	EXON_LNCRNA	EXON_LNCRNA	SNHG16	ENSG00000163597.15	ENST00000493536.6:ENST00000653677.1:ENST00000667091.1:ENST00000670737.1:ENST00000586846.2:ENST00000661348.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2	lncRNA	lncRNA	lncRNA	lncRNA	62	134	2	1.07504	1.258875	1.44271	0.0274217	0.00565281	0.123884	0.0412388
chr17	19190148	19190245	16471871	0	-	0.42268	(0.42,0.455]	chr17	1345665	6	EXON_SMALL	EXON_SMALL	SNORD3C	ENSG00000264940.5	ENST00000580533.1	snoRNA	snoRNA	snoRNA	snoRNA	534	1147	2	1.10546	1.258295	1.41113	0.0108976	0.0013706	0.0662686	0.0148194
chr1	28742617	28742715	118408	0	+	0.44898	(0.42,0.455]	chr1	14542	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000474884.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5:ENST00000496288.5:ENST00000476976.1:ENST00000475796.5:ENST00000468863.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	38	2	1.16706	1.25426	1.34146	0.0581314	0.053512	0.199312	0.197317
chr8	30679228	30679325	9781754	0	-	0.278351	[0,0.29]	chr8	739673	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1:ENST00000643525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	33	47	2	1.13261	1.25389	1.37517	0.0441912	0.0227401	0.16434000000000001	0.107737
chr21	8443763	8443863	18041982	0	+	0.65	(0.59,1]	chr21	1530902	39	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	10548	50593	2	1.01485	1.2538	1.49275	0.024703	0.00263036	0.113193	0.0239118
chr8	30679131	30679228	9781753	0	-	0.247423	[0,0.29]	chr8	739673	12	UTR3	UTR3:EXON_MRNA	GSR	ENSG00000104687.14	ENST00000221130.11:ENST00000643653.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	28	38	2	1.223	1.25338	1.28376	0.0431991	0.0385589	0.161703	0.157116
chr5	151809018	151809117	6299816	0	+	0.545455	(0.53,0.59]	chr5	491960	36	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	22	61	2	1.21587	1.253055	1.29024	0.0421804	0.0364312	0.159214	0.149226
chr17	49054962	49055061	16256696	0	+	0.40404	(0.39,0.42]	chr17	1317683	57	UTR3	UTR3:EXON_MRNA	IGF2BP1	ENSG00000159217.10	ENST00000290341.8	protein_coding	protein_coding	protein_coding	protein_coding	32	64	2	1.18747	1.252915	1.31836	0.0323838	0.0229928	0.136178	0.106255
chr1	108638030	108638130	394964	0	+	0.33	(0.29,0.33]	chr1	38052	30	UTR3	UTR3:EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	34	55	2	1.14442	1.252485	1.36055	0.0338628	0.03038	0.141431	0.130016
chrM	9206	9306	19377231	0	+	0.54	(0.53,0.59]	chrM	1649817	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	MT-ATP6:MT-CO3	ENSG00000198899.2:ENSG00000198938.2	ENST00000361899.2:ENST00000362079.2	protein_coding	protein_coding	protein_coding	protein_coding	216	586	2	1.12041	1.2521849999999999	1.38396	0.0121943	0.00300013	0.070229	0.0256542
chr5	138555837	138555936	6862348	0	-	0.262626	[0,0.29]	chr5	525185	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	HSPA9	ENSG00000113013.16	ENST00000677693.1:ENST00000677064.1:ENST00000678300.1:ENST00000677425.1:ENST00000649578.2:ENST00000677988.1:ENST00000297185.9:ENST00000677527.1:ENST00000678794.1:ENST00000677553.1:ENST00000678384.1:ENST00000678051.1:ENST00000677066.1:ENST00000649692.2:ENST00000678551.1:ENST00000501917.7:ENST00000524109.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	54	78	2	1.12759	1.250515	1.37344	0.0250128	0.0147176	0.114145	0.0802571
chrX	133671136	133671219	18862843	0	+	0.409639	(0.39,0.42]	chrX	1607273	3	EXON_PSEUDO	EXON_PSEUDO	RPS24P19	ENSG00000227008.2	ENST00000426577.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	56	110	2	1.00514	1.2463	1.48746	0.0333923	0.0100893	0.138061	0.062576
chr11	93721541	93721621	12076159	0	+	0.4125	(0.39,0.42]	chr11	930599	1	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP295:SCARNA9:ENSG10010135528.1	ENSG00000166004.15:ENSG00000254911.3:ENSG00000275146.1	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1:ENST00000530422.1:ENST00000364329.1	snoRNA	snoRNA	snoRNA:protein_coding:lncRNA	snoRNA:protein_coding:lncRNA	60	118	2	1.20793	1.245555	1.28318	0.0156856	0.0132649	0.0845106	0.0740932
chr7	123790657	123790711	9046887	0	-	0.425926	(0.42,0.455]	chr7	690673	2	EXON_SMALL	EXON_SMALL	RNU6-11P	ENSG00000201104.1	ENST00000364234.1	snRNA	snRNA	snRNA	snRNA	933	2004	2	0.781952	1.2418909999999999	1.70183	0.0481286	1.49593e-4	0.175495	0.00272272
chr4	99948274	99948367	5551580	0	-	0.322581	(0.29,0.33]	chr4	443717	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	H2AZ1	ENSG00000164032.12	ENST00000511348.1:ENST00000511203.1:ENST00000651623.1:ENST00000296417.6:ENST00000511319.5:ENST00000529158.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	32	49	2	1.06717	1.24156	1.41595	0.055002	0.0184408	0.190051	0.093162
chr4	176332049	176332147	5242262	0	+	0.397959	(0.39,0.42]	chr4	421869	39	UTR3	UTR3:EXON_MRNA	SPCS3	ENSG00000129128.13	ENST00000503362.2	protein_coding	protein_coding	protein_coding	protein_coding	47	95	2	1.1820600000000001	1.24089	1.29972	0.0204991	0.0178642	0.0994583	0.0918323
chr19	3979807	3979893	17430212	0	-	0.686047	(0.59,1]	chr19	1454706	1	CDS	CDS:EXON_MRNA	EEF2	ENSG00000167658.16	ENST00000309311.7	protein_coding	protein_coding	protein_coding	protein_coding	77	363	2	1.21603	1.2405	1.26497	0.0174028	0.017001	0.0918746	0.0894428
chr9	128695242	128695339	10480932	0	+	0.329897	(0.29,0.33]	chr9	790686	7	UTR3	UTR3:EXON_MRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000322030.13	protein_coding	protein_coding	protein_coding	protein_coding	53	82	2	1.12199	1.23475	1.34751	0.0335642	0.010496	0.140734	0.0644466
chr7	5527460	5527555	8659472	0	-	0.378947	(0.36,0.39]	chr7	662109	12	UTR3	UTR3:EXON_MRNA	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5:ENST00000493945.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	177	329	2	1.02385	1.22958	1.43531	0.0212044	0.00203963	0.101993	0.0192577
chr9	76571905	76572005	10314442	0	+	0.55	(0.53,0.59]	chr9	776558	57	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000648797.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1387	3741	2	1.04561	1.2286549999999998	1.4117	0.0138315	0.0016166	0.0760883	0.0161179
chr3	195214786	195214839	3985915	0	+	0.415094	(0.39,0.42]	chr3	335578	1	EXON_SMALL	EXON_SMALL	RNU6-25P	ENSG00000206600.1	ENST00000383873.1	snRNA	snRNA	snRNA	snRNA	161	319	2	1.1962	1.227685	1.25917	0.00900138	0.0061400100000000004	0.0571472	0.04382
chr10	73007581	73007672	11568233	0	-	0.296703	(0.29,0.33]	chr10	880432	5	UTR3	UTR3:EXON_MRNA	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	35	55	2	1.05799	1.223025	1.38806	0.0399197	0.03433	0.153279	0.142579
chr17	75777805	75777903	16684883	0	-	0.387755	(0.36,0.39]	chr17	1373459	15	UTR3	UTR3:EXON_MRNA	H3-3B	ENSG00000132475.10	ENST00000254810.8	protein_coding	protein_coding	protein_coding	protein_coding	35	63	2	0.970787	1.2204535	1.47012	0.0559318	0.0182072	0.192466	0.0925808
chr7	74195594	74195689	8334066	0	+	0.578947	(0.53,0.59]	chr7	634971	4	UTR3	UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	49	132	2	1.1231	1.218205	1.31331	0.0293113	0.0120731	0.129773	0.0701019
chr21	8398659	8398759	18041517	0	+	0.54	(0.53,0.59]	chr21	1530863	30	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	5387	14385	2	1.05102	1.21747	1.38392	0.0129547	0.00180149	0.0727955	0.0183913
chr17	81511269	81511351	16707874	0	-	0.609756	(0.59,1]	chr17	1377335	2	CDS	CDS:UTR3:EXON_MRNA	ACTG1	ENSG00000184009.13	ENST00000681052.1:ENST00000576544.6:ENST00000681842.1:ENST00000573283.7:ENST00000615544.5:ENST00000570382.2:ENST00000679480.1:ENST00000679778.1:ENST00000574671.6:ENST00000576214.3:ENST00000679410.1:ENST00000681092.1:ENST00000680227.1:ENST00000680727.1:ENST00000572105.7:ENST00000679535.1:ENST00000575842.5:ENST00000576917.5:ENST00000576209.5:ENST00000575087.5:ENST00000575994.6:ENST00000575659.6:ENST00000571691.6:ENST00000571721.6:ENST00000644774.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	29	136	2	1.19946	1.215635	1.23181	0.0408555	0.033377	0.163285	0.137999
chr1	114717491	114717588	1239590	0	-	0.340206	(0.33,0.36]	chr1	121344	7	UTR3	UTR3:EXON_MRNA	CSDE1	ENSG00000009307.16	ENST00000339438.10:ENST00000610726.4:ENST00000358528.9:ENST00000438362.6:ENST00000261443.9:ENST00000530886.5:ENST00000369530.5	protein_coding	protein_coding	protein_coding	protein_coding	66	112	2	0.985601	1.2148455	1.44409	0.0452509	0.00480305	0.174753	0.0365653
chr6	165409561	165409618	7544649	0	+	0.578947	(0.53,0.59]	chr6	575730	1	EXON_SMALL	EXON_SMALL	RNA5SP226	ENSG00000199523.1	ENST00000362653.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene	489	1273	2	0.917219	1.2125595	1.5079	0.0283489	0.00104129	0.124857	0.0122506
chr17	28720797	28720890	16177265	0	+	0.612903	(0.59,1]	chr17	1305486	2	CDS	CDS:UTR5:EXON_MRNA	RPL23A	ENSG00000198242.14	ENST00000422514.7:ENST00000582736.1:ENST00000496182.5:ENST00000394938.8:ENST00000394935.7:ENST00000355731.8:ENST00000472628.1:ENST00000578181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	96	438	2	1.13326	1.2114099999999999	1.28956	0.0217212	0.0145934	0.103349	0.0796097
chr12	110346931	110347023	13085919	0	+	0.48913	(0.455,0.49]	chr12	1020554	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	39	86	2	1.04114	1.210095	1.37905	0.053221	0.0105818	0.196292	0.0644466
chr1	35602775	35602873	938331	0	-	0.346939	(0.33,0.36]	chr1	98692	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PSMB2	ENSG00000126067.12	ENST00000373237.4:ENST00000621781.4:ENST00000630477.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	43	68	2	1.03371	1.20901	1.38431	0.0454982	0.0151054	0.175478	0.0820464
chr11	85957863	85957961	12525708	0	-	0.326531	(0.29,0.33]	chr11	972155	8	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	49	76	2	1.14772	1.20577	1.26382	0.0363619	0.0151021	0.148966	0.08203
chr20	36046599	36046697	17956007	0	-	0.44898	(0.42,0.455]	chr20	1521358	11	EXON_LNCRNA	EXON_LNCRNA	NORAD	ENSG00000260032.2	ENST00000565493.2	lncRNA	lncRNA	lncRNA	lncRNA	37	78	2	1.08641	1.2052550000000002	1.3241	0.0381615	0.0200295	0.149227	0.0972845
chr5	163443984	163444078	6343431	0	+	0.37234	(0.36,0.39]	chr5	494014	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCNG1	ENSG00000113328.19	ENST00000393929.5:ENST00000340828.7:ENST00000511683.6:ENST00000504553.2:ENST00000509143.1:ENST00000509425.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	36	66	2	1.08999	1.202735	1.31548	0.0495329	0.0173797	0.185857	0.0917579
chr5	136080469	136080533	6848710	0	-	0.46875	(0.455,0.49]	chr5	524189	1	EXON_SMALL	EXON_SMALL	VTRNA2-1:Vault	ENSG00000270123.4:ENSG00000278815.1	ENST00000602301.2:ENST00000365160.1	vault_RNA	vault_RNA	vault_RNA:misc_RNA	vault_RNA:misc_RNA	81	172	2	1.17777	1.199135	1.2205	0.013737	0.0136621	0.0760883	0.0750223
chr6	67883078	67883178	7784091	0	-	0.55	(0.53,0.59]	chr6	596223	10	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	92	237	2	0.989917	1.1964385	1.40296	0.0305249	0.00533279	0.130016	0.0405931
chr15	44718066	44718159	14899985	0	+	0.27957	[0,0.29]	chr15	1171710	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	B2M	ENSG00000166710.21	ENST00000544417.5:ENST00000561424.5:ENST00000648006.3:ENST00000349264.10:ENST00000559220.1:ENST00000561139.1:ENST00000623550.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	39	57	2	1.1592	1.195465	1.23173	0.0455655	0.0266864	0.175605	0.118497
chr11	85958355	85958454	12525713	0	-	0.353535	(0.33,0.36]	chr11	972155	13	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	37	63	2	1.16673	1.194915	1.2231	0.0448038	0.0223322	0.173151	0.104825
chr11	118750021	118750119	12625427	0	-	0.357143	(0.33,0.36]	chr11	979521	24	UTR3	UTR3:EXON_MRNA	DDX6	ENSG00000110367.13	ENST00000534980.7:ENST00000620157.4:ENST00000617381.4	protein_coding	protein_coding	protein_coding	protein_coding	29	48	2	1.07673	1.19427	1.31181	0.052115	0.0332272	0.18423900000000001	0.139614
chr11	65434985	65435085	11984693	0	+	0.43	(0.42,0.455]	chr11	920390	110	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	28	58	2	1.18852	1.191185	1.19385	0.0438207	0.0348805	0.163572	0.144656
chr11	810234	810334	11758910	0	+	0.62	(0.59,1]	chr11	898471	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RPLP2	ENSG00000177600.9	ENST00000532004.5:ENST00000321153.9:ENST00000530797.5:ENST00000524867.1:ENST00000530398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	150	683	2	1.1724	1.1871550000000002	1.20191	0.016828	0.0159736	0.0889612	0.0858119
chr6	67884376	67884475	7784104	0	-	0.535354	(0.53,0.59]	chr6	596226	1	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	55	147	2	1.06883	1.185095	1.30136	0.0391559	0.00984633	0.159356	0.0614758
chr12	53041418	53041517	12884658	0	+	0.414141	(0.39,0.42]	chr12	1001808	13	UTR3	UTR3:EXON_MRNA	EIF4B	ENSG00000063046.18	ENST00000262056.14	protein_coding	protein_coding	protein_coding	protein_coding	35	68	2	1.08935	1.18401	1.27867	0.0471928	0.0215479	0.17993	0.102904
chr6	37170235	37170320	7136245	0	+	0.752941	(0.59,1]	chr6	549926	2	UTR5	UTR5:EXON_MRNA	PIM1	ENSG00000137193.14	ENST00000373509.6	protein_coding	protein_coding	protein_coding	protein_coding	29	133	2	1.14414	1.1828699999999999	1.2216	0.0467146	0.0367364	0.178436	0.145024
chr11	61967425	61967494	12406761	0	-	0.826087	(0.59,1]	chr11	960811	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FTH1	ENSG00000167996.16	ENST00000529191.5:ENST00000529631.5:ENST00000530019.5:ENST00000273550.12:ENST00000534180.1:ENST00000532829.5:ENST00000620041.4:ENST00000526640.5:ENST00000534719.1:ENST00000533138.1:ENST00000529548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	152	679	2	1.0999	1.18119	1.26248	0.0219398	0.0131237	0.103959	0.0732586
chrX	109054541	109054590	18819073	0	+	0.755102	(0.59,1]	chrX	1603842	1	EXON_SMALL	EXON_SMALL:PRIMIRNA	ENSG00000275110	ENSG00000275110.1	ENST00000611066.1	miRNA	miRNA	miRNA	miRNA:primary_miRNA	2113	9837	2	0.90209	1.180815	1.45954	0.0428867	0.00282067	0.168543	0.0243838
chr11	108084963	108085014	12124560	0	+	0.470588	(0.455,0.49]	chr11	933373	2	EXON_SMALL	EXON_SMALL:INTRON	CUL5:Y_RNA	ENSG00000166266.14:ENSG00000200855.1	ENST00000393094.7:ENST00000531427.5:ENST00000363985.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:nonsense_mediated_decay	472	976	2	0.885045	1.1807325	1.47642	0.0318013	9.89929e-4	0.132996	0.011777
chr3	186789627	186789717	3958289	0	+	0.3	(0.29,0.33]	chr3	333880	5	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	41	62	2	1.17715	1.17885	1.18055	0.0392875	0.026098	0.15986	0.117079
chr16	18792459	18792558	15877070	0	-	0.313131	(0.29,0.33]	chr16	1269296	9	UTR3	UTR3:EXON_MRNA:INTRON	RP11-1035H13.3:ARL6IP1	ENSG00000260342.2:ENSG00000170540.15	ENST00000567078.2:ENST00000304414.12	protein_coding	protein_coding	protein_coding	protein_coding	55	86	2	1.16115	1.176495	1.19184	0.0377327	0.0164468	0.153959	0.0872581
chr2	186508822	186508912	2260949	0	+	0.422222	(0.42,0.455]	chr2	205567	2	UTR3	UTR3:EXON_MRNA	ZC3H15	ENSG00000065548.18	ENST00000337859.11:ENST00000445547.1	protein_coding	protein_coding	protein_coding	protein_coding	27	57	2	1.15028	1.17604	1.2018	0.04989	0.0382754	0.187163	0.149227
chr6	67884873	67884973	7784109	0	-	0.42	(0.39,0.42]	chr6	596226	6	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	93	174	2	0.922895	1.1742025	1.42551	0.0405045	0.00429992	0.153343	0.033652
chr1	205714210	205714309	1461997	0	-	0.383838	(0.36,0.39]	chr1	147460	15	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	87	153	2	0.984804	1.171687	1.35857	0.0357343	0.005874	0.147298	0.0424661
chr4	82354056	82354154	5493463	0	-	0.387755	(0.36,0.39]	chr4	439963	17	UTR3	UTR3:EXON_MRNA	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000514325.1:ENST00000352301.8:ENST00000514671.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	35	59	2	1.11514	1.17093	1.22672	0.0373192	0.0365326	0.152314	0.145024
chrX	24062494	24062574	18616530	0	+	0.3375	(0.33,0.36]	chrX	1589805	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	EIF2S3	ENSG00000130741.11	ENST00000487075.1:ENST00000253039.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	64	105	2	0.995613	1.1682715	1.34093	0.0453309	0.00838747	0.174858	0.0541836
chrM	11547	11645	19377256	0	+	0.428571	(0.42,0.455]	chrM	1649826	8	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	429	851	2	1.00561	1.167475	1.32934	0.0169089	0.00304768	0.0890655	0.0259311
chr2	177219992	177220092	2228543	0	+	0.31	(0.29,0.33]	chr2	203394	8	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	31	45	2	1.12378	1.161555	1.19933	0.0532564	0.0389522	0.19642	0.149655
chr6	108211684	108211777	7883752	0	-	0.397849	(0.39,0.42]	chr6	603535	6	UTR3	UTR3:EXON_MRNA	SNX3	ENSG00000112335.15	ENST00000230085.13:ENST00000368979.6:ENST00000426155.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	36	68	2	0.985879	1.1598345	1.33379	0.0541973	0.0240619	0.18758	0.11319799999999999
chr17	50386144	50386195	16585156	0	-	0.431373	(0.42,0.455]	chr17	1363124	1	EXON_SMALL	EXON_SMALL:INTRON	LRRC59:Y_RNA	ENSG00000108829.10:ENSG00000206824.1	ENST00000225972.8:ENST00000384097.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding	228	457	2	0.862301	1.1558705	1.44944	0.0405235	0.00157656	0.153346	0.0167388
chr1	241630729	241630828	1578020	0	-	0.292929	(0.29,0.33]	chr1	157611	20	UTR3	UTR3:EXON_MRNA:INTRON	OPN3:CHML	ENSG00000054277.14:ENSG00000203668.3	ENST00000366554.3:ENST00000490673.5:ENST00000469376.5:ENST00000463155.5:ENST00000478849.1:ENST00000366553.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	31	45	2	1.10349	1.1556700000000002	1.20785	0.0514015	0.0420431	0.18321	0.166739
chr1	109100276	109100360	396893	0	+	0.690476	(0.59,1]	chr1	38419	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA	SCARNA2	ENSG00000270066.3:ENSG00000278249.1	ENST00000602755.1:ENST00000458748.1	scaRNA	scaRNA	scaRNA:lncRNA	scaRNA:lncRNA	1022	4549	2	1.11996	1.1556549999999999	1.19135	0.0161198	0.0125921	0.0866586	0.0717599
chr12	6510303	6510386	12713320	0	+	0.433735	(0.42,0.455]	chr12	986517	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPD2:SCARNA10	ENSG00000010292.13:ENSG00000239002.3:ENSG00000276232.1	ENST00000541399.1:ENST00000539714.5:ENST00000382457.8:ENST00000539084.5:ENST00000315579.10:ENST00000459255.1:ENST00000541782.1	snoRNA	snoRNA	snoRNA:protein_coding:lncRNA	snoRNA:protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	88	177	2	1.06057	1.154715	1.24886	0.0246735	0.00986153	0.113069	0.0617282
chr9	112222563	112222662	10802908	0	-	0.373737	(0.36,0.39]	chr9	818409	50	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6	protein_coding	protein_coding	protein_coding	protein_coding	40	71	2	1.13501	1.152345	1.16968	0.0389958	0.0293341	0.15871	0.128557
chr7	128770249	128770348	8521859	0	+	0.353535	(0.33,0.36]	chr7	650198	12	UTR3	UTR3:EXON_MRNA:INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000493278.1	protein_coding	protein_coding	protein_coding	protein_coding	55	91	2	1.11893	1.151865	1.1848	0.0374928	0.0176804	0.152998	0.0929433
chr1	28509178	28509269	117115	0	+	0.43956	(0.42,0.455]	chr1	14302	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RCC1:SNHG3	ENSG00000180198.17:ENSG00000242125.3	ENST00000398958.6:ENST00000649185.1:ENST00000413987.1:ENST00000427469.5:ENST00000683442.1:ENST00000434290.6:ENST00000373833.10:ENST00000437681.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	69	145	2	0.925984	1.151657	1.37733	0.0529628	0.00590987	0.195536	0.042699
chr11	85958158	85958257	12525711	0	-	0.393939	(0.39,0.42]	chr11	972155	11	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	38	74	2	1.12452	1.14829	1.17206	0.0495031	0.0248361	0.185748	0.113696
chr19	6413572	6413650	17442176	0	-	0.346154	(0.33,0.36]	chr19	1456768	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KHSRP	ENSG00000088247.18	ENST00000600480.2:ENST00000398148.7:ENST00000594745.5:ENST00000619396.4:ENST00000597656.5	protein_coding	protein_coding	protein_coding	protein_coding	45	70	2	1.0968	1.141375	1.18595	0.0379275	0.0275238	0.154724	0.122032
chrX	24077074	24077170	18616683	0	+	0.5	(0.49,0.53]	chrX	1589843	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	EIF2S3	ENSG00000130741.11	ENST00000253039.9:ENST00000457332.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	169	366	2	1.11567	1.133035	1.1504	0.0130386	0.0115725	0.0732493	0.0683068
chr19	2273008	2273108	17196010	0	+	0.59	(0.53,0.59]	chr19	1412855	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	OAZ1:LLfos-48D6.2	ENSG00000104904.12:ENSG00000273734.1	ENST00000590943.6:ENST00000602676.6:ENST00000581150.6:ENST00000621615.1:ENST00000582888.8:ENST00000593012.1:ENST00000586054.2:ENST00000592727.3:ENST00000589739.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	89	222	2	1.08756	1.128775	1.16999	0.0195173	0.0185027	0.0977704	0.0932453
chr6	67887757	67887856	7784138	0	-	0.575758	(0.53,0.59]	chr6	596229	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1:ENST00000661172.1:ENST00000412872.3	lncRNA	lncRNA	lncRNA	lncRNA	47	119	2	1.07958	1.12774	1.1759	0.038981	0.0218802	0.158665	0.103959
chr6	67882181	67882280	7784082	0	-	0.323232	(0.29,0.33]	chr6	596223	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1	lncRNA	lncRNA	lncRNA	lncRNA	88	123	2	0.978472	1.1273659999999999	1.27626	0.036045	0.0108511	0.145024	0.0643837
chr12	54284661	54284761	12891476	0	+	0.33	(0.29,0.33]	chr12	1002945	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000677778.1:ENST00000679079.1:ENST00000677840.1:ENST00000679026.1:ENST00000677666.1:ENST00000677061.1:ENST00000677072.1:ENST00000676661.1:ENST00000679251.1:ENST00000678199.1:ENST00000676925.1:ENST00000677832.1:ENST00000678093.1:ENST00000678687.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	64	88	2	0.961357	1.1268785000000001	1.2924	0.0530496	0.0118221	0.184656	0.0686664
chr9	128691928	128692000	10480890	0	+	0.388889	(0.36,0.39]	chr9	790664	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SET	ENSG00000119335.17	ENST00000372692.8:ENST00000409104.7:ENST00000322030.13:ENST00000372688.8:ENST00000372686.5:ENST00000477806.5:ENST00000480217.5:ENST00000480536.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	71	119	2	0.955884	1.124902	1.29392	0.0431686	0.0107801	0.161594	0.064368
chr12	54284239	54284313	12891470	0	+	0.445946	(0.42,0.455]	chr12	1002942	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000676794.1:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000679273.1:ENST00000678448.1:ENST00000677778.1:ENST00000677191.1:ENST00000678456.1:ENST00000676572.1:ENST00000679344.1:ENST00000678212.1:ENST00000679079.1:ENST00000678970.1:ENST00000676886.1:ENST00000678412.1:ENST00000551679.1:ENST00000677840.1:ENST00000679026.1:ENST00000677666.1:ENST00000677061.1:ENST00000677072.1:ENST00000676661.1:ENST00000679251.1:ENST00000678199.1:ENST00000676925.1:ENST00000677832.1:ENST00000678093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	112	222	2	1.07923	1.123335	1.16744	0.0188063	0.0134479	0.0958835	0.0749741
chr1	241512054	241512143	1577520	0	-	0.370787	(0.36,0.39]	chr1	157538	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1:ENST00000497042.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	32	56	2	1.05926	1.122725	1.18619	0.0531869	0.0448963	0.19617	0.166684
chr1	235110409	235110507	1560076	0	-	0.44898	(0.42,0.455]	chr1	156012	12	UTR3	UTR3:EXON_MRNA	TOMM20	ENSG00000173726.11	ENST00000366607.5	protein_coding	protein_coding	protein_coding	protein_coding	60	122	2	1.05254	1.121775	1.19101	0.0380022	0.0161141	0.155005	0.0866586
chr12	54284761	54284861	12891477	0	+	0.38	(0.36,0.39]	chr12	1002945	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RP11-968A15.8:HNRNPA1	ENSG00000258344.1:ENSG00000135486.19	ENST00000553061.1:ENST00000546500.5:ENST00000677385.1:ENST00000677210.1:ENST00000677375.1:ENST00000677249.1:ENST00000676725.1:ENST00000678418.1:ENST00000550482.2:ENST00000340913.11:ENST00000547566.5:ENST00000679228.1:ENST00000678365.1:ENST00000330752.12:ENST00000547276.5:ENST00000677220.1:ENST00000678077.1:ENST00000677778.1:ENST00000677840.1:ENST00000677666.1:ENST00000677061.1:ENST00000677072.1:ENST00000676661.1:ENST00000679251.1:ENST00000678199.1:ENST00000676925.1:ENST00000677832.1:ENST00000678093.1:ENST00000678687.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	339	601	2	0.915921	1.1185555	1.32119	0.0299643	0.00300608	0.129773	0.0256975
chr4	165342320	165342414	5206960	0	+	0.329787	(0.29,0.33]	chr4	420285	5	UTR3	UTR3:EXON_MRNA	MSMO1	ENSG00000052802.13	ENST00000261507.11:ENST00000393766.6	protein_coding	protein_coding	protein_coding	protein_coding	45	64	2	1.08185	1.1179999999999999	1.15415	0.0376407	0.0370262	0.151601	0.147649
chrM	14746	14846	19377283	0	+	0.44	(0.42,0.455]	chrM	1649830	1	CDS_START	CDS_START:CDS:EXON_MRNA	MT-CYB	ENSG00000198727.2	ENST00000361789.2	protein_coding	protein_coding	protein_coding	protein_coding	148	282	2	0.983063	1.1156865	1.24831	0.0249154	0.00813217	0.116255	0.0529441
chr1	96679433	96679526	1185023	0	-	0.419355	(0.39,0.42]	chr1	116525	7	EXON_PSEUDO	EXON_PSEUDO	RPL7P9	ENSG00000137970.7	ENST00000468715.1	processed_pseudogene	processed_pseudogene	processed_pseudogene	processed_pseudogene	46	83	2	0.89744	1.1100750000000001	1.32271	0.0578232	0.0276674	0.198271	0.124905
chr16	68742479	68742533	15717933	0	+	0.592593	(0.59,1]	chr16	1251498	1	EXON_SMALL	EXON_SMALL:INTRON	CDH1:RNA5SP429	ENSG00000039068.20:ENSG00000200558.1	ENST00000261769.10:ENST00000566612.5:ENST00000422392.6:ENST00000566510.5:ENST00000363688.1	rRNA_pseudogene	rRNA_pseudogene	rRNA_pseudogene:protein_coding	rRNA_pseudogene:protein_coding:nonsense_mediated_decay	289	1236	2	0.974313	1.1035865	1.23286	0.0337831	0.0120413	0.139653	0.0694224
chr1	29118383	29118480	121633	0	+	0.494845	(0.49,0.53]	chr1	14751	17	UTR3	UTR3:EXON_MRNA	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000649717.1:ENST00000373798.5:ENST00000343067.9:ENST00000460378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	48	102	2	1.05884	1.0942150000000002	1.12959	0.0372882	0.0321503	0.152293	0.133823
chrM	9010	9107	19377229	0	+	0.453608	(0.42,0.455]	chrM	1649815	5	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	335	637	2	0.87993	1.0916649999999999	1.3034	0.033142	0.00382277	0.139271	0.0309456
chr21	8441171	8441271	18041956	0	+	0.53	(0.49,0.53]	chr21	1530902	13	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	3253	6898	2	0.813187	1.0867785	1.36037	0.0402718	0.00180291	0.153343	0.0183913
chrM	8626	8722	19377225	0	+	0.364583	(0.36,0.39]	chrM	1649815	1	CDS	CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	362	573	2	1.043	1.0865	1.13	0.0145715	0.00998249	0.0794921	0.0620152
chr1	32334311	32334406	922173	0	-	0.526316	(0.49,0.53]	chr1	97099	6	UTR3	UTR3:EXON_MRNA	MARCKSL1	ENSG00000175130.7	ENST00000329421.8	protein_coding	protein_coding	protein_coding	protein_coding	36	76	2	1.05369	1.084865	1.11604	0.0474097	0.0410167	0.17993	0.155165
chrM	9107	9206	19377230	0	+	0.414141	(0.39,0.42]	chrM	1649816	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	MT-ATP6	ENSG00000198899.2	ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	289	505	2	1.07941	1.084125	1.08884	0.0131282	0.0126462	0.0736339	0.0718207
chr21	8389678	8389777	18041426	0	+	0.777778	(0.59,1]	chr21	1530861	8	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	401	1816	2	0.919166	1.083903	1.24864	0.0439664	0.0100448	0.163596	0.0623334
chrM	6483	6579	19377202	0	+	0.541667	(0.53,0.59]	chrM	1649805	6	CDS	CDS:EXON_MRNA	MT-CO1	ENSG00000198804.2	ENST00000361624.2	protein_coding	protein_coding	protein_coding	protein_coding	492	1199	2	0.860621	1.0744105	1.2882	0.0375691	0.00394827	0.147369	0.0322851
chr11	65500743	65500842	11984964	0	+	0.343434	(0.33,0.36]	chr11	920412	32	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MALAT1	ENSG00000251562.8	ENST00000619449.2:ENST00000534336.1:ENST00000544868.2	lncRNA	lncRNA	lncRNA	lncRNA	1228	1808	2	0.864559	1.0735195	1.28248	0.0313309	0.00308019	0.13127	0.0273239
chr1	91387527	91387626	1163775	0	-	0.535354	(0.53,0.59]	chr1	114858	13	INTRON	INTRON	HFM1	ENSG00000162669.16	ENST00000370425.8:ENST00000481900.5:ENST00000488023.1:ENST00000448819.5:ENST00000427444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2669	6447	2	0.920744	1.0725120000000001	1.22428	0.0253973	0.00497633	0.117089	0.0369504
chr2	175181630	175181710	3028061	0	-	0.7125	(0.59,1]	chr2	268138	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP5MC3	ENSG00000154518.10	ENST00000284727.9:ENST00000409194.5:ENST00000392541.3:ENST00000497075.5:ENST00000472782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	47	199	2	1.0537	1.07136	1.08902	0.0448153	0.0440839	0.172163	0.166389
chr11	65425513	65425613	11984598	0	+	0.38	(0.36,0.39]	chr11	920390	15	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	66	107	2	0.991862	1.0657109999999999	1.13956	0.0419857	0.0221793	0.166528	0.104593
chrM	13477	13572	19377276	0	+	0.431579	(0.42,0.455]	chrM	1649828	13	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	93	174	2	0.896421	1.0618655	1.22731	0.0460664	0.0118388	0.176878	0.0693057
chr1	27325218	27325271	112934	0	+	0.415094	(0.39,0.42]	chr1	13635	1	EXON_SMALL	EXON_SMALL:INTRON	TMEM222:RNU6-48P	ENSG00000186501.15:ENSG00000206888.1	ENST00000611517.4:ENST00000374076.9:ENST00000464720.5:ENST00000608611.5:ENST00000486082.5:ENST00000466759.5:ENST00000464813.5:ENST00000478104.5:ENST00000498220.1:ENST00000384161.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:nonsense_mediated_decay	130	233	2	0.955101	1.0543555	1.15361	0.0344107	0.0119477	0.142912	0.0699348
chr3	96617947	96618043	4316747	0	-	0.447917	(0.42,0.455]	chr3	360010	8	UTR5	UTR5:EXON_MRNA	MTRNR2L12	ENSG00000269028.3	ENST00000600213.3	protein_coding	protein_coding	protein_coding	protein_coding	1503	2827	2	0.880307	1.0467784999999998	1.21325	0.028661	0.0049452	0.128714	0.0367623
chr6	67885371	67885471	7784114	0	-	0.41	(0.39,0.42]	chr6	596226	11	INTRON	INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	126	216	2	0.845904	1.0433919999999999	1.24088	0.0501817	0.00886414	0.180408	0.0567156
chr3	186789717	186789807	3958290	0	+	0.355556	(0.33,0.36]	chr3	333880	6	UTR3	UTR3:EXON_MRNA	EIF4A2	ENSG00000156976.17	ENST00000426808.5:ENST00000323963.10:ENST00000440191.6:ENST00000425053.5:ENST00000485101.5:ENST00000443963.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	73	107	2	0.97242	1.0377399999999999	1.10306	0.0451205	0.0239804	0.174359	0.11015
chr21	8393926	8394025	18041469	0	+	0.555556	(0.53,0.59]	chr21	1530861	51	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000623860.3:ENST00000651813.1:ENST00000652379.1:ENST00000651958.1	lncRNA	lncRNA	lncRNA	lncRNA	11626	26682	2	0.799006	1.034218	1.26943	0.0441055	0.00366522	0.164023	0.0307914
chr2	231713128	231713220	2426304	0	+	0.391304	(0.39,0.42]	chr2	218683	4	UTR3	UTR3:EXON_MRNA:PRIMIRNA	PTMA:MIR1244-1	ENSG00000187514.17:ENSG00000284378.1	ENST00000448874.5:ENST00000341369.11:ENST00000409115.8:ENST00000481928.1:ENST00000409683.5:ENST00000412128.1:ENST00000612829.5	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:primary_miRNA	154	261	2	0.880813	1.0320115	1.18321	0.0433298	0.00934345	0.162172	0.0587918
chr21	8210888	8210987	18041126	0	+	0.565657	(0.53,0.59]	chr21	1530812	16	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	11865	27187	2	0.788527	1.0304585	1.27239	0.0461997	0.00359865	0.169811	0.0302943
chr6	67886567	67886667	7784126	0	-	0.54	(0.53,0.59]	chr6	596227	2	SS5_PROX	SS5_PROX:INTRON	RP11-301G19.1	ENSG00000227706.4	ENST00000657794.1:ENST00000652869.1:ENST00000662821.1:ENST00000658972.1:ENST00000663640.1:ENST00000660755.1:ENST00000660756.1:ENST00000667200.1:ENST00000654364.1:ENST00000670870.1:ENST00000666873.1:ENST00000658272.1	lncRNA	lncRNA	lncRNA	lncRNA	68	159	2	0.985048	1.0302390000000001	1.07543	0.0373958	0.0309035	0.146718	0.131262
chr7	74195498	74195594	8334065	0	+	0.458333	(0.455,0.49]	chr7	634971	3	UTR3	UTR3:EXON_MRNA	EIF4H	ENSG00000106682.16	ENST00000678438.1:ENST00000677998.1:ENST00000495187.2:ENST00000265753.13:ENST00000353999.6:ENST00000677570.1:ENST00000677681.1:ENST00000678815.1:ENST00000679266.1:ENST00000679287.1:ENST00000679161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	121	226	2	0.949371	1.0193655000000001	1.08936	0.0344521	0.0178401	0.143075	0.0934942
chrM	11645	11743	19377257	0	+	0.5	(0.49,0.53]	chrM	1649826	9	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	519	1013	2	0.847186	1.0163980000000001	1.18561	0.0368019	0.00694189	0.150721	0.0473262
chr7	5527268	5527364	8659470	0	-	0.322917	(0.29,0.33]	chr7	662109	10	UTR3	UTR3:EXON_MRNA	ACTB	ENSG00000075624.17	ENST00000674681.1:ENST00000676319.1:ENST00000676189.1:ENST00000473257.3:ENST00000676397.1:ENST00000642480.2:ENST00000646664.1:ENST00000464611.1:ENST00000675515.1:ENST00000477812.2:ENST00000425660.5:ENST00000462494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	511	652	2	0.950387	1.0161685	1.08195	0.0227797	0.0123095	0.105293	0.0705839
chr21	8217691	8217790	18041195	0	+	0.555556	(0.53,0.59]	chr21	1530814	51	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	3572	8214	2	0.974293	1.0069215	1.03955	0.0195014	0.0137531	0.0976923	0.0760883
chr21	8438135	8438234	18041925	0	+	0.565657	(0.53,0.59]	chr21	1530900	51	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	11200	25254	2	0.779529	1.0060095	1.23249	0.0480764	0.00458129	0.175495	0.0355028
chr11	85957764	85957863	12525707	0	-	0.414141	(0.39,0.42]	chr11	972155	7	UTR3	UTR3:EXON_MRNA	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5	protein_coding	protein_coding	protein_coding	protein_coding	79	134	2	0.858924	1.004797	1.15067	0.0531971	0.0261525	0.184818	0.119077
chr3	12839505	12839584	4042189	0	-	0.518987	(0.49,0.53]	chr3	339353	3	CDS	CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RPL32	ENSG00000144713.13	ENST00000429711.7:ENST00000396957.5:ENST00000273223.10:ENST00000435983.5:ENST00000396953.6:ENST00000457131.1:ENST00000452606.2:ENST00000434963.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	69	137	2	0.969956	1.0006080000000002	1.03126	0.040189	0.0372752	0.163285	0.146487
chrM	5226	5321	19377192	0	+	0.505263	(0.49,0.53]	chrM	1649802	9	CDS	CDS:EXON_MRNA	MT-ND2	ENSG00000198763.3	ENST00000361453.3	protein_coding	protein_coding	protein_coding	protein_coding	243	476	2	0.934021	0.9937805	1.05354	0.0285192	0.0165358	0.128215	0.087611
chr11	66348170	66348214	11989837	0	+	0.568182	(0.53,0.59]	chr11	921673	1	SS5_PROX	SS5_PROX:INTRON	RP11-867G23.8	ENSG00000255468.7	ENST00000531602.1:ENST00000581155.5	lncRNA	lncRNA	lncRNA	lncRNA	364	825	2	0.89491	0.9881599999999999	1.08141	0.0332982	0.0134678	0.137922	0.075073
chr9	76571705	76571805	10314440	0	+	0.63	(0.59,1]	chr9	776558	55	INTRON	INTRON	GCNT1	ENSG00000187210.14	ENST00000648797.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1753	6952	2	0.850119	0.9859545000000001	1.12179	0.0526244	0.0156228	0.195536	0.0844741
chr6	73519882	73519926	7796091	0	-	0.409091	(0.39,0.42]	chr6	597147	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EEF1A1	ENSG00000156508.19	ENST00000676547.1:ENST00000309268.11:ENST00000610520.5:ENST00000316292.13:ENST00000615060.5:ENST00000356303.7:ENST00000331523.7:ENST00000490569.6:ENST00000678515.1:ENST00000676710.1:ENST00000678508.1:ENST00000678702.1:ENST00000677236.1:ENST00000455918.2:ENST00000491404.2:ENST00000488500.2:ENST00000495333.6:ENST00000678703.1:ENST00000677062.1:ENST00000678143.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	422	691	2	0.79728	0.977725	1.15817	0.0471325	0.00803712	0.172333	0.0529269
chr11	65423555	65423637	11984576	0	+	0.585366	(0.53,0.59]	chr11	920386	3	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	71	159	2	0.950103	0.9635724999999999	0.977042	0.0457791	0.0403845	0.168329	0.163285
chr21	8444960	8445059	18041994	0	+	0.555556	(0.53,0.59]	chr21	1530902	51	INTRON	INTRON	CH507-528H12.1	ENSG00000280441.3	ENST00000651813.1:ENST00000652379.1	lncRNA	lncRNA	lncRNA	lncRNA	3705	8176	2	0.906429	0.9463710000000001	0.986313	0.027226	0.0181303	0.120751	0.0922923
chr21	8216300	8216399	18041181	0	+	0.646465	(0.59,1]	chr21	1530814	37	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2464	9477	2	0.876304	0.9383819999999999	1.00046	0.044834	0.0285166	0.166457	0.128207
chrX	12976977	12977060	18584862	0	+	0.493976	(0.49,0.53]	chrX	1587310	3	UTR3	UTR3:EXON_MRNA	TMSB4X	ENSG00000205542.11	ENST00000380636.1:ENST00000451311.7:ENST00000380635.5:ENST00000380633.1	protein_coding	protein_coding	protein_coding	protein_coding	75	140	2	0.849155	0.9338725000000001	1.01859	0.0546301	0.0517464	0.193577	0.189059
chrM	13096	13192	19377272	0	+	0.46875	(0.455,0.49]	chrM	1649828	9	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	151	260	2	0.847265	0.9284975	1.00973	0.046743	0.0253073	0.178538	0.114703
chrM	8526	8626	19377224	0	+	0.49	(0.455,0.49]	chrM	1649814	1	CDS_START	CDS_START:CDS_STOP:CDS:EXON_MRNA	MT-ATP8:MT-ATP6	ENSG00000228253.1:ENSG00000198899.2	ENST00000361851.1:ENST00000361899.2	protein_coding	protein_coding	protein_coding	protein_coding	331	568	2	0.894267	0.9255230000000001	0.956779	0.0343124	0.0227175	0.141505	0.107637
chr21	8216002	8216101	18041178	0	+	0.838384	(0.59,1]	chr21	1530814	34	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	2486	9293	2	0.837689	0.8945430000000001	0.951397	0.0522396	0.0349411	0.18423900000000001	0.144899
chr11	65426012	65426112	11984603	0	+	0.53	(0.49,0.53]	chr11	920390	20	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.9	ENST00000499732.3:ENST00000501122.2:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	182	334	2	0.884605	0.890153	0.895701	0.0410562	0.0363645	0.163285	0.145024
chrM	11252	11350	19377253	0	+	0.408163	(0.39,0.42]	chrM	1649826	5	CDS	CDS:EXON_MRNA	MT-ND4	ENSG00000198886.2	ENST00000361381.2	protein_coding	protein_coding	protein_coding	protein_coding	540	829	2	0.873106	0.8897285	0.906351	0.0334374	0.0275006	0.138246	0.124208
chrM	13857	13952	19377280	0	+	0.4	(0.39,0.42]	chrM	1649828	17	CDS	CDS:EXON_MRNA	MT-ND5	ENSG00000198786.2	ENST00000361567.2	protein_coding	protein_coding	protein_coding	protein_coding	162	242	2	0.84028	0.845487	0.850694	0.048889	0.0480755	0.183698	0.175495
chr21	8215406	8215505	18041172	0	+	0.585859	(0.53,0.59]	chr21	1530814	28	INTRON	INTRON	CH507-513H4.1	ENSG00000278996.1	ENST00000623664.1	lncRNA	lncRNA	lncRNA	lncRNA	3647	7178	2	0.757367	0.7861739999999999	0.814981	0.0535055	0.0413977	0.185237	0.164536